/* * Copyright (c) 2010, The Broad Institute * * Permission is hereby granted, free of charge, to any person * obtaining a copy of this software and associated documentation * files (the "Software"), to deal in the Software without * restriction, including without limitation the rights to use, * copy, modify, merge, publish, distribute, sublicense, and/or sell * copies of the Software, and to permit persons to whom the * Software is furnished to do so, subject to the following * conditions: * * The above copyright notice and this permission notice shall be * included in all copies or substantial portions of the Software. * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, * EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES * OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND * NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT * HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, * WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR * OTHER DEALINGS IN THE SOFTWARE. */ package org.broadinstitute.sting.gatk; import org.broadinstitute.sting.commandline.Hidden; import org.broadinstitute.sting.gatk.walkers.Walker; import org.broadinstitute.sting.gatk.walkers.qc.CountLoci; import org.broadinstitute.sting.utils.exceptions.DynamicClassResolutionException; import org.broadinstitute.sting.utils.exceptions.UserException; import org.testng.Assert; import org.testng.annotations.BeforeClass; import org.testng.annotations.Test; /** * Tests basic functionality of the walker manager. */ public class WalkerManagerUnitTest { private static WalkerManager walkerManager; @BeforeClass public void setUp() { walkerManager = new WalkerManager(); } @Test public void testPresentWalker() { Walker countLociWalker = walkerManager.createByName("CountLoci"); Assert.assertEquals(CountLoci.class,countLociWalker.getClass()); } @Test(expectedExceptions=UserException.class) public void testAbsentWalker() { walkerManager.createByName("Missing"); } @Test(expectedExceptions=DynamicClassResolutionException.class) public void testUninstantiableWalker() { walkerManager.createByName("UninstantiableWalker"); } } @Hidden class UninstantiableWalker extends Walker { // Private constructor will generate uninstantiable message private UninstantiableWalker() {} public Long reduceInit() { return 0L; } public Long reduce(Integer value, Long accum) { return 0L; } }