4.0.0 org.broadinstitute.sting sting-aggregator 2.8-SNAPSHOT ../.. gatk-package jar GATK Package ${project.basedir}/../.. prepare-package package org.broadinstitute.sting.gatk.CommandLineGATK GenomeAnalysisTK ${project.groupId} gatk-framework ${project.version} org.broad tribble org.broadinstitute variant commons-logging commons-logging ${project.groupId} gatk-framework ${project.version} example-resources tar.bz2 org.apache.maven.plugins maven-dependency-plugin unpack-direct-dependencies ${sting.unpack.phase} org.apache.maven.plugins maven-shade-plugin sting-executable ${sting.shade.phase} org.apache.maven.plugins maven-assembly-plugin binary-dist ${sting.shade.phase} com.pyx4j maven-junction-plugin link-git-release ${sting.shade.phase} org.apache.maven.plugins maven-install-plugin default-install none install-package install protected ${basedir}/../../protected/gatk-protected/pom.xml ${project.groupId} gatk-protected ${project.version} true private ${basedir}/../../private/gatk-private/pom.xml ${project.groupId} gatk-private ${project.version} true