##fileformat=VCFv4.1 ##samtoolsVersion=0.1.16 (r963:234) ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA12878 20 9999996 . A ACT 214 . INDEL;DP=76;AF1=1;CI95=1,1;DP4=0,0,51,25;MQ=60;FQ=-264 GT:PL:GQ 1/1:255,229,0:99 20 10000117 . C T 98 . DP=62;AF1=0.5;CI95=0.5,0.5;DP4=16,19,18,6;MQ=60;FQ=101;PV4=0.033,7.6e-24,1,1 GT:PL:GQ 0/1:128,0,255:99 20 10000211 . C T 173 . DP=54;AF1=0.5;CI95=0.5,0.5;DP4=15,11,11,15;MQ=60;FQ=176;PV4=0.41,1.4e-29,1,1 GT:PL:GQ 0/1:203,0,255:99 20 10000439 . T G 222 . DP=80;AF1=1;CI95=1,1;DP4=0,0,45,31;MQ=59;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 20 10000598 . T A 222 . DP=48;AF1=1;CI95=1,1;DP4=0,0,17,25;MQ=55;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 20 10000694 . G A 151 . DP=81;AF1=0.5;CI95=0.5,0.5;DP4=26,20,17,18;MQ=49;FQ=154;PV4=0.51,6.6e-36,2.5e-07,1 GT:PL:GQ 0/1:181,0,255:99 20 10000758 . T A 177 . DP=92;AF1=1;CI95=1,1;DP4=0,0,43,48;MQ=54;FQ=-282 GT:PL:GQ 1/1:210,255,0:99 20 10001019 . T G 167 . DP=71;AF1=0.5;CI95=0.5,0.5;DP4=17,22,13,15;MQ=48;FQ=170;PV4=1,0.002,4.2e-26,0.11 GT:PL:GQ 0/1:197,0,255:99 20 10001298 . T A 222 . DP=72;AF1=1;CI95=1,1;DP4=0,0,41,28;MQ=55;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 20 10001436 . AAGGCTA AAGGCTAGGCTA 214 . INDEL;DP=49;AF1=1;CI95=1,1;DP4=0,0,37,6;MQ=41;FQ=-164 GT:PL:GQ 1/1:255,129,0:99 20 10001474 . C T 222 . DP=70;AF1=1;CI95=1,1;DP4=0,0,43,24;MQ=43;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 20 10001617 . C A 225 . DP=100;AF1=0.5;CI95=0.5,0.5;DP4=23,28,32,16;MQ=59;FQ=225;PV4=0.043,1,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10001628 . G A 222 . DP=93;AF1=1;CI95=1,1;DP4=0,0,54,36;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 20 10001661 . T C 222 . DP=80;AF1=1;CI95=1,1;DP4=0,0,49,30;MQ=58;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 20 10001670 . T G 222 . DP=80;AF1=1;CI95=1,1;DP4=0,0,45,32;MQ=57;FQ=-259 GT:PL:GQ 1/1:255,232,0:99 20 10002058 . T G 222 . DP=76;AF1=1;CI95=1,1;DP4=0,0,50,23;MQ=58;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 20 10002099 . C T 117 . DP=62;AF1=0.5;CI95=0.5,0.5;DP4=19,8,21,13;MQ=57;FQ=120;PV4=0.59,6.2e-29,0.29,1 GT:PL:GQ 0/1:147,0,255:99 20 10002138 . C G 222 . DP=53;AF1=1;CI95=1,1;DP4=0,0,25,25;MQ=56;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 20 10002142 . G C 222 . DP=52;AF1=1;CI95=1,1;DP4=0,0,24,26;MQ=56;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 20 10002458 . GTTTTTTTTTTT GTTTTTTTTTTTTTT,GTTTTTTTTTTTTT,GTTTTTTTTTTTT 46.2 . INDEL;DP=56;AF1=1;CI95=0.5,1;DP4=0,1,8,6;MQ=58;FQ=-44.5;PV4=0.47,1,0.4,0.32 GT:PL:GQ 1/1:127,51,41,90,0,80,127,39,79,119:17 20 10002470 . C T 18.6 . DP=66;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=46;FQ=-39 GT:PL:GQ 1/1:51,12,0:20 20 10002625 . G T 222 . DP=61;AF1=1;CI95=1,1;DP4=0,0,25,35;MQ=59;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 20 10003021 . C T 222 . DP=60;AF1=1;CI95=1,1;DP4=0,0,35,24;MQ=59;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 20 10003358 . A C 186 . DP=85;AF1=0.5;CI95=0.5,0.5;DP4=28,14,28,14;MQ=60;FQ=189;PV4=1,1.1e-25,1,0.15 GT:PL:GQ 0/1:216,0,255:99 20 10003651 . T C 222 . DP=88;AF1=1;CI95=1,1;DP4=0,0,31,57;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 20 10003692 . A G 222 . DP=65;AF1=1;CI95=1,1;DP4=0,0,24,38;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 20 10003832 . G A 222 . DP=64;AF1=1;CI95=1,1;DP4=0,0,21,41;MQ=57;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 20 10004094 . A C 215 . DP=49;AF1=1;CI95=1,1;DP4=0,0,30,15;MQ=54;FQ=-162 GT:PL:GQ 1/1:248,135,0:99 20 10004147 . A G 222 . DP=53;AF1=1;CI95=1,1;DP4=0,0,19,31;MQ=53;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 20 10004193 . G T 225 . DP=52;AF1=0.5;CI95=0.5,0.5;DP4=12,12,12,15;MQ=56;FQ=225;PV4=0.78,0.47,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10004351 . C G 222 . DP=68;AF1=1;CI95=1,1;DP4=0,0,34,29;MQ=59;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 20 10004389 . T G 158 . DP=62;AF1=1;CI95=1,1;DP4=0,0,23,36;MQ=58;FQ=-205 GT:PL:GQ 1/1:191,178,0:99 20 10004610 . A C 198 . DP=87;AF1=1;CI95=1,1;DP4=0,0,46,41;MQ=59;FQ=-282 GT:PL:GQ 1/1:231,255,0:99 20 10004725 . A G 225 . DP=64;AF1=0.5;CI95=0.5,0.5;DP4=10,25,15,14;MQ=55;FQ=225;PV4=0.075,0.012,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10004769 . TAAAACTATGCAAAACTATGCAAAACTA TAAAACTATGCAAAACTA 188 . INDEL;DP=68;AF1=0.5;CI95=0.5,0.5;DP4=11,17,6,15;MQ=50;FQ=191;PV4=0.55,0.00036,1.2e-27,1 GT:PL:GQ 0/1:226,0,255:99 20 10004874 . A C 222 . DP=82;AF1=1;CI95=1,1;DP4=0,0,46,30;MQ=60;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 20 10004887 . A G 149 . DP=82;AF1=0.5;CI95=0.5,0.5;DP4=22,20,23,15;MQ=60;FQ=152;PV4=0.5,2.7e-32,0.15,1 GT:PL:GQ 0/1:179,0,255:99 20 10005010 . C T 222 . DP=72;AF1=1;CI95=1,1;DP4=0,0,44,27;MQ=60;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 20 10005427 . C T 222 . DP=54;AF1=1;CI95=1,1;DP4=0,0,28,26;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 20 10005499 . A G 222 . DP=73;AF1=1;CI95=1,1;DP4=0,0,39,29;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 20 10005587 . A G 183 . DP=70;AF1=0.5;CI95=0.5,0.5;DP4=17,17,15,19;MQ=60;FQ=186;PV4=0.81,5.6e-21,1,1 GT:PL:GQ 0/1:213,0,255:99 20 10005723 . A G 222 . DP=84;AF1=1;CI95=1,1;DP4=0,0,45,35;MQ=60;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 20 10006291 . G A 123 . DP=81;AF1=0.5;CI95=0.5,0.5;DP4=25,28,13,14;MQ=60;FQ=126;PV4=1,7.5e-21,1,0.054 GT:PL:GQ 0/1:153,0,255:99 20 10006404 . A C 156 . DP=76;AF1=1;CI95=1,1;DP4=0,0,25,43;MQ=60;FQ=-232 GT:PL:GQ 1/1:189,205,0:99 20 10006682 . T A,G 190 . DP=72;AF1=1;CI95=1,1;DP4=0,0,41,28;MQ=60;FQ=-232 GT:PL:GQ 1/1:223,205,0,224,187,221:99 20 10006819 . AAAACAAACAAACAAACAAACAAACAAACAAA AAAACAAACAAACAAACAAACAAACAAA 214 . INDEL;DP=72;AF1=1;CI95=1,1;DP4=0,0,27,27;MQ=60;FQ=-198 GT:PL:GQ 1/1:255,163,0:99 20 10007150 . G C 143 . DP=62;AF1=0.5;CI95=0.5,0.5;DP4=15,22,13,10;MQ=60;FQ=146;PV4=0.29,2.1e-12,1,0.42 GT:PL:GQ 0/1:173,0,255:99 20 10007175 . C T 138 . DP=60;AF1=0.5;CI95=0.5,0.5;DP4=9,13,17,20;MQ=60;FQ=141;PV4=0.79,8.3e-18,1,0.087 GT:PL:GQ 0/1:168,0,252:99 20 10007352 . C T 216 . DP=69;AF1=1;CI95=1,1;DP4=0,0,27,37;MQ=60;FQ=-220 GT:PL:GQ 1/1:249,193,0:99 20 10007531 . A G 184 . DP=71;AF1=1;CI95=1,1;DP4=0,0,47,21;MQ=60;FQ=-232 GT:PL:GQ 1/1:217,205,0:99 20 10007980 . A C 222 . DP=79;AF1=1;CI95=1,1;DP4=0,0,38,37;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 20 10008029 . TAAAAAAAAA TAAAAAAAAAA 52.5 . INDEL;DP=66;AF1=1;CI95=1,1;DP4=1,2,26,25;MQ=60;FQ=-153;PV4=1,1,1,0.063 GT:PL:GQ 1/1:93,118,0:99 20 10008146 . TAAAAAAA TAAAAAA 91.5 . INDEL;DP=72;AF1=1;CI95=1,1;DP4=0,0,36,32;MQ=60;FQ=-240 GT:PL:GQ 1/1:132,205,0:99 20 10008221 . T C 183 . DP=77;AF1=1;CI95=1,1;DP4=0,0,41,33;MQ=60;FQ=-250 GT:PL:GQ 1/1:216,223,0:99 20 10008458 . T G 222 . DP=71;AF1=1;CI95=1,1;DP4=0,0,31,39;MQ=52;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 20 10008742 . G T 182 . DP=52;AF1=0.5;CI95=0.5,0.5;DP4=10,12,12,16;MQ=36;FQ=179;PV4=1,0.075,0.069,0.44 GT:PL:GQ 0/1:212,0,207:99 20 10008950 . AACACACACACACACACACACACACACACACACACACACACACACAC AACACACACACACACACACACACACACACACACAC 59.5 . INDEL;DP=40;AF1=0.5;CI95=0.5,0.5;DP4=11,4,6,6;MQ=51;FQ=62.5;PV4=0.26,1,2.2e-05,1 GT:PL:GQ 0/1:97,0,204:99 20 10008951 . A C 95 . DP=24;AF1=1;CI95=1,1;DP4=0,0,8,3;MQ=56;FQ=-60 GT:PL:GQ 1/1:128,33,0:63 20 10009227 . A G 185 . DP=59;AF1=0.5;CI95=0.5,0.5;DP4=15,6,19,18;MQ=58;FQ=188;PV4=0.17,6.3e-18,1,0.21 GT:PL:GQ 0/1:215,0,233:99 20 10009246 . A G 222 . DP=74;AF1=1;CI95=1,1;DP4=0,0,39,31;MQ=57;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 20 10009400 . T A 76 . DP=73;AF1=1;CI95=1,1;DP4=0,0,29,21;MQ=60;FQ=-178 GT:PL:GQ 1/1:109,151,0:99 20 10009512 . C G 222 . DP=75;AF1=1;CI95=1,1;DP4=0,0,28,46;MQ=59;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 20 10009719 . A G 222 . DP=61;AF1=1;CI95=1,1;DP4=0,0,24,31;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 20 10009795 . A G 222 . DP=44;AF1=1;CI95=1,1;DP4=0,0,14,29;MQ=60;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 20 10009844 . G A 152 . DP=55;AF1=1;CI95=1,1;DP4=1,0,10,10;MQ=52;FQ=-75;PV4=1,1,1,1 GT:PL:GQ 1/1:185,48,0:93 20 10009871 . A G 59 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=3,3,3,10;MQ=53;FQ=33;PV4=0.32,0.0059,1,0.41 GT:PL:GQ 0/1:89,0,60:63 20 10009875 . A G 34 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=2,2,1,9;MQ=53;FQ=18;PV4=0.18,0.0013,1,1 GT:PL:GQ 0/1:64,0,45:48 20 10009875 . AG AGGGAGGG 215 . INDEL;DP=50;AF1=1;CI95=1,1;DP4=1,2,7,18;MQ=53;FQ=-53.5;PV4=1,1,1,0.21 GT:PL:GQ 1/1:255,19,0:35 20 10009879 . A G 82 . DP=44;AF1=1;CI95=1,1;DP4=0,0,2,9;MQ=56;FQ=-60 GT:PL:GQ 1/1:115,33,0:63 20 10009883 . A G 89 . DP=44;AF1=1;CI95=1,1;DP4=0,0,2,12;MQ=55;FQ=-69 GT:PL:GQ 1/1:122,42,0:81 20 10010393 . T G 143 . DP=76;AF1=0.5;CI95=0.5,0.5;DP4=24,11,17,22;MQ=60;FQ=146;PV4=0.037,4.9e-28,0.17,0.17 GT:PL:GQ 0/1:173,0,255:99 20 10010536 . GAAAAAA GAAAAAAA 130 . INDEL;DP=77;AF1=1;CI95=1,1;DP4=0,0,35,34;MQ=60;FQ=-243 GT:PL:GQ 1/1:171,208,0:99 20 10010766 . T G 222 . DP=67;AF1=1;CI95=1,1;DP4=0,0,36,30;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 20 10010832 . T C 222 . DP=73;AF1=1;CI95=1,1;DP4=0,0,28,43;MQ=60;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 20 10011075 . C T 163 . DP=84;AF1=0.5;CI95=0.5,0.5;DP4=23,22,20,17;MQ=60;FQ=166;PV4=0.83,3.4e-08,1,0.29 GT:PL:GQ 0/1:193,0,255:99 20 10011309 . T C 222 . DP=77;AF1=1;CI95=1,1;DP4=0,0,30,44;MQ=60;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 20 10011666 . C T 208 . DP=70;AF1=1;CI95=1,1;DP4=0,0,38,29;MQ=60;FQ=-229 GT:PL:GQ 1/1:241,202,0:99 20 10011939 . C T 222 . DP=61;AF1=1;CI95=1,1;DP4=0,0,22,38;MQ=57;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 20 10012021 . CAAAAAAAA CAAAAAAA 78.5 . INDEL;DP=70;AF1=1;CI95=1,1;DP4=1,1,24,40;MQ=56;FQ=-200;PV4=1,0.0012,1,1 GT:PL:GQ 1/1:119,165,0:99 20 10012362 . G T 154 . DP=22;AF1=1;CI95=1,1;DP4=0,0,2,19;MQ=53;FQ=-90 GT:PL:GQ 1/1:187,63,0:99 20 10012384 . T C 40 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,9,1,5;MQ=52;FQ=43;PV4=0.4,1.8e-06,0.25,1 GT:PL:GQ 0/1:70,0,138:73 20 10012387 . T C 103 . DP=14;AF1=1;CI95=1,1;DP4=0,0,1,10;MQ=54;FQ=-60 GT:PL:GQ 1/1:136,33,0:63 20 10012479 . A G 201 . DP=20;AF1=1;CI95=1,1;DP4=0,0,9,10;MQ=49;FQ=-84 GT:PL:GQ 1/1:234,57,0:99 20 10012498 . C G 110 . DP=12;AF1=1;CI95=1,1;DP4=0,0,4,8;MQ=41;FQ=-63 GT:PL:GQ 1/1:143,36,0:69 20 10012518 . T C 124 . DP=11;AF1=1;CI95=1,1;DP4=0,0,4,7;MQ=31;FQ=-60 GT:PL:GQ 1/1:157,33,0:63 20 10012631 . CG CGG 112 . INDEL;DP=20;AF1=0.5;CI95=0.5,0.5;DP4=9,0,7,3;MQ=47;FQ=83.5;PV4=0.21,1,0.13,0.23 GT:PL:GQ 0/1:150,0,118:99 20 10012714 . G C 175 . DP=34;AF1=1;CI95=1,1;DP4=0,0,28,5;MQ=53;FQ=-126 GT:PL:GQ 1/1:208,99,0:99 20 10012751 . T C 201 . DP=29;AF1=1;CI95=1,1;DP4=0,0,15,11;MQ=54;FQ=-105 GT:PL:GQ 1/1:234,78,0:99 20 10013119 . C T 175 . DP=57;AF1=0.5;CI95=0.5,0.5;DP4=18,8,17,13;MQ=52;FQ=178;PV4=0.41,2.1e-21,0.044,1 GT:PL:GQ 0/1:205,0,255:99 20 10013574 . G A 159 . DP=64;AF1=0.5;CI95=0.5,0.5;DP4=13,21,8,22;MQ=60;FQ=162;PV4=0.43,4.6e-21,0.21,1 GT:PL:GQ 0/1:189,0,255:99 20 10014990 . CATATATATATA CATATATATATATA 217 . INDEL;DP=85;AF1=0.5;CI95=0.5,0.5;DP4=27,10,27,10;MQ=60;FQ=217;PV4=1,1,0.16,0.34 GT:PL:GQ 0/1:255,0,255:99 20 10015679 . C T 39 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=5,0,6,0;MQ=60;FQ=42;PV4=1,0.0013,1,0.3 GT:PL:GQ 0/1:69,0,95:72 20 10015761 . T C 119 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=9,0,11,1;MQ=59;FQ=97;PV4=1,0.098,1,1 GT:PL:GQ 0/1:149,0,124:99 20 10018158 . G C 154 . DP=86;AF1=0.5;CI95=0.5,0.5;DP4=15,22,20,27;MQ=60;FQ=157;PV4=1,4.6e-21,1,1 GT:PL:GQ 0/1:184,0,255:99 20 10018555 . G A 225 . DP=81;AF1=0.5;CI95=0.5,0.5;DP4=21,15,20,22;MQ=60;FQ=225;PV4=0.37,0.23,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10019093 . A G 152 . DP=70;AF1=0.5;CI95=0.5,0.5;DP4=16,17,19,17;MQ=60;FQ=155;PV4=0.81,3.3e-30,1,0.4 GT:PL:GQ 0/1:182,0,255:99 20 10020229 . G A 225 . DP=79;AF1=0.5;CI95=0.5,0.5;DP4=21,16,24,17;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10023689 . G A 184 . DP=82;AF1=0.5;CI95=0.5,0.5;DP4=16,13,24,25;MQ=59;FQ=187;PV4=0.64,4.3e-36,1,1 GT:PL:GQ 0/1:214,0,255:99 20 10024107 . C T 225 . DP=85;AF1=0.5;CI95=0.5,0.5;DP4=21,17,24,20;MQ=59;FQ=225;PV4=1,1,0.055,1 GT:PL:GQ 0/1:255,0,255:99 20 10026357 . T C 187 . DP=59;AF1=0.5;CI95=0.5,0.5;DP4=9,17,19,13;MQ=60;FQ=190;PV4=0.071,3.7e-13,0.19,0.44 GT:PL:GQ 0/1:217,0,255:99 20 10026794 . C T 225 . DP=52;AF1=0.5;CI95=0.5,0.5;DP4=7,12,13,18;MQ=60;FQ=181;PV4=0.77,1,1,1 GT:PL:GQ 0/1:255,0,208:99 20 10027234 . ATTA ATTAGTTA 217 . INDEL;DP=64;AF1=0.5;CI95=0.5,0.5;DP4=18,15,11,17;MQ=57;FQ=217;PV4=0.31,1,0.0013,0.45 GT:PL:GQ 0/1:255,0,255:99 20 10027868 . A G 103 . DP=87;AF1=0.5;CI95=0.5,0.5;DP4=19,24,20,19;MQ=59;FQ=106;PV4=0.66,1.2e-39,0.47,1 GT:PL:GQ 0/1:133,0,255:99 20 10027872 . A G 52 . DP=83;AF1=0.5;CI95=0.5,0.5;DP4=16,23,20,19;MQ=59;FQ=55;PV4=0.5,1.1e-58,1,1 GT:PL:GQ 0/1:82,0,255:85 20 10028867 . ATGTGTGTGTGTGTGTGTGTGT ATGTGTGTGTGTGTGTGTGTGTGT 217 . INDEL;DP=80;AF1=0.5;CI95=0.5,0.5;DP4=11,21,18,10;MQ=60;FQ=217;PV4=0.037,1,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10030188 . T A 225 . DP=79;AF1=0.5;CI95=0.5,0.5;DP4=23,18,14,22;MQ=60;FQ=225;PV4=0.17,1,0.14,1 GT:PL:GQ 0/1:255,0,255:99 20 10031254 . AT ATT 217 . INDEL;DP=76;AF1=0.5;CI95=0.5,0.5;DP4=26,11,24,14;MQ=60;FQ=217;PV4=0.63,1,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10031342 . G A 151 . DP=90;AF1=0.5;CI95=0.5,0.5;DP4=22,19,29,20;MQ=60;FQ=154;PV4=0.67,5.4e-35,1,0.4 GT:PL:GQ 0/1:181,0,255:99 20 10031798 . G A 222 . DP=103;AF1=1;CI95=1,1;DP4=0,0,55,46;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 20 10031827 . C T 124 . DP=107;AF1=0.5;CI95=0.5,0.5;DP4=32,20,28,25;MQ=60;FQ=127;PV4=0.43,6.6e-53,1,0.49 GT:PL:GQ 0/1:154,0,255:99 20 10032094 . G A 225 . DP=83;AF1=0.5;CI95=0.5,0.5;DP4=14,33,16,20;MQ=60;FQ=225;PV4=0.25,1,1,0.21 GT:PL:GQ 0/1:255,0,255:99 20 10032413 . T G 170 . DP=63;AF1=0.5;CI95=0.5,0.5;DP4=14,19,18,10;MQ=60;FQ=173;PV4=0.12,1.1e-30,1,0.26 GT:PL:GQ 0/1:200,0,255:99 20 10032882 . A T 91 . DP=74;AF1=0.5;CI95=0.5,0.5;DP4=29,12,20,12;MQ=59;FQ=94;PV4=0.62,3.4e-33,1,1 GT:PL:GQ 0/1:121,0,255:99 20 10032972 . C CAT 217 . INDEL;DP=60;AF1=0.5;CI95=0.5,0.5;DP4=17,16,11,13;MQ=60;FQ=217;PV4=0.79,1,1,0.37 GT:PL:GQ 0/1:255,0,255:99 20 10034306 . T C 113 . DP=75;AF1=0.5;CI95=0.5,0.5;DP4=23,21,13,13;MQ=60;FQ=116;PV4=1,9e-22,1,1 GT:PL:GQ 0/1:143,0,255:99 20 10036930 . CGATAGCCCTAGCCCTAGATAGATAGCCCTAGCCCTAGATAGATAGC CGATAGCCCTAGCCCTAGATAGATAGC 190 . INDEL;DP=65;AF1=0.5;CI95=0.5,0.5;DP4=7,18,6,9;MQ=52;FQ=193;PV4=0.5,1,3e-15,1 GT:PL:GQ 0/1:228,0,255:99 20 10036950 . A C 38 . DP=62;AF1=0.5;CI95=0.5,0.5;DP4=20,30,6,5;MQ=56;FQ=41;PV4=0.5,0.0006,0.00016,0.13 GT:PL:GQ 0/1:68,0,255:71 20 10037037 . C T 181 . DP=79;AF1=0.5;CI95=0.5,0.5;DP4=26,10,27,13;MQ=59;FQ=184;PV4=0.8,1.1e-06,1,0.26 GT:PL:GQ 0/1:211,0,255:99 20 10037110 . TGATAGATAGATAGAT TGATAGATAGATAGATAGAT 214 . INDEL;DP=61;AF1=1;CI95=1,1;DP4=0,0,33,10;MQ=52;FQ=-164 GT:PL:GQ 1/1:255,129,0:99 20 10037133 . AGATAGATAGATGATAGATAGAT AGATAGATAGAT 18.5 . INDEL;DP=65;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,3;MQ=27;FQ=13.9;PV4=0.4,1,1,1 GT:PL:GQ 0/1:56,0,49:51 20 10037144 . TGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA TGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA 89.5 . INDEL;DP=58;AF1=1;CI95=1,1;DP4=0,0,8,18;MQ=40;FQ=-91.5 GT:PL:GQ 1/1:255,182,125:99 20 10037709 . A T 111 . DP=71;AF1=0.5;CI95=0.5,0.5;DP4=24,15,19,12;MQ=60;FQ=114;PV4=1,8.6e-23,1,1 GT:PL:GQ 0/1:141,0,255:99 20 10039371 . T G 190 . DP=70;AF1=0.5;CI95=0.5,0.5;DP4=14,18,24,14;MQ=60;FQ=193;PV4=0.15,1.5e-32,1,1 GT:PL:GQ 0/1:220,0,255:99 20 10040772 . CTTTTTTTT CTTTTTTTTT 61.5 . INDEL;DP=42;AF1=1;CI95=1,1;DP4=0,0,20,13;MQ=60;FQ=-134 GT:PL:GQ 1/1:102,99,0:99 20 10040812 . ATTTTTTTTT ATTTTTTTT,ATTTTTTT 57.5 . INDEL;DP=41;AF1=1;CI95=1,1;DP4=0,0,15,16;MQ=59;FQ=-125 GT:PL:GQ 1/1:98,90,0,99,76,96:99 20 10041304 . C T 201 . DP=68;AF1=1;CI95=1,1;DP4=0,0,34,32;MQ=60;FQ=-226 GT:PL:GQ 1/1:234,199,0:99 20 10041698 . CATAT CATATAT 214 . INDEL;DP=64;AF1=1;CI95=1,1;DP4=0,0,11,13;MQ=57;FQ=-107 GT:PL:GQ 1/1:255,72,0:99 20 10041701 . AT ATATGT 214 . INDEL;DP=66;AF1=1;CI95=1,1;DP4=0,2,26,28;MQ=57;FQ=-151;PV4=0.49,1,1,0.16 GT:PL:GQ 1/1:255,116,0:99 20 10041703 . G A 9.52 . DP=67;AF1=0.5;CI95=0.5,0.5;DP4=3,2,2,1;MQ=57;FQ=12.3;PV4=1,0.0071,1,0.27 GT:PL:GQ 0/1:39,0,120:41 20 10042319 . C T 222 . DP=63;AF1=1;CI95=1,1;DP4=0,0,33,26;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 20 10042761 . A G 202 . DP=91;AF1=1;CI95=1,1;DP4=0,0,51,32;MQ=60;FQ=-277 GT:PL:GQ 1/1:235,250,0:99 20 10042829 . A G 222 . DP=77;AF1=1;CI95=1,1;DP4=0,0,42,33;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 20 10043002 . A T 150 . DP=84;AF1=0.5;CI95=0.5,0.5;DP4=19,29,17,19;MQ=60;FQ=153;PV4=0.51,7.5e-26,1,1 GT:PL:GQ 0/1:180,0,255:99 20 10044849 . A G 222 . DP=59;AF1=1;CI95=1,1;DP4=0,0,22,34;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 20 10045078 . G T 204 . DP=78;AF1=1;CI95=1,1;DP4=0,0,33,39;MQ=59;FQ=-244 GT:PL:GQ 1/1:237,217,0:99 20 10045642 . G C 222 . DP=80;AF1=1;CI95=1,1;DP4=0,0,37,41;MQ=60;FQ=-262 GT:PL:GQ 1/1:255,235,0:99 20 10046178 . AAGAAAGAAAGAGAAAGAAAGAGAAAGA AAGAAAGAAAGAGAAAGA 214 . INDEL;DP=49;AF1=1;CI95=1,1;DP4=0,0,18,20;MQ=36;FQ=-149 GT:PL:GQ 1/1:255,114,0:99 20 10046182 . AAGAAAGAGAAAGA AAGAAAGA 111 . INDEL;DP=23;AF1=0.5;CI95=0.5,0.5;DP4=2,3,5,3;MQ=48;FQ=48.5;PV4=0.59,1,0.0022,0.23 GT:PL:GQ 0/1:149,0,83:86 20 10046186 . AAGAGA AAGA 169 . INDEL;DP=20;AF1=0.5;CI95=0.5,0.5;DP4=2,1,5,3;MQ=48;FQ=32.5;PV4=1,1,0.037,1 GT:PL:GQ 0/1:207,0,67:70 20 10046537 . A G 225 . DP=58;AF1=0.5;CI95=0.5,0.5;DP4=13,15,10,18;MQ=54;FQ=225;PV4=0.59,4e-05,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10050828 . T C 140 . DP=85;AF1=0.5;CI95=0.5,0.5;DP4=26,21,18,18;MQ=60;FQ=143;PV4=0.66,4.9e-46,1,0.49 GT:PL:GQ 0/1:170,0,255:99 20 10051448 . T C 144 . DP=70;AF1=0.5;CI95=0.5,0.5;DP4=28,8,20,12;MQ=60;FQ=147;PV4=0.19,1.5e-12,0.15,0.34 GT:PL:GQ 0/1:174,0,255:99 20 10052688 . C A 166 . DP=76;AF1=0.5;CI95=0.5,0.5;DP4=27,17,16,16;MQ=60;FQ=169;PV4=0.36,5.8e-27,1,1 GT:PL:GQ 0/1:196,0,255:99 20 10058022 . T C 225 . DP=69;AF1=0.5;CI95=0.5,0.5;DP4=16,21,12,18;MQ=59;FQ=225;PV4=0.81,0.044,1,0.28 GT:PL:GQ 0/1:255,0,255:99 20 10067049 . TAAAAAAAAAAAAAAAAAAAAAAAAA TAAAAAAAAAAAAAAAAA,TAAAAAAAAAAAAAAAA,TAAAAAAAAAAAAAAAAAA 48.9 . INDEL;DP=48;AF1=0.5554;CI95=0.5,1;DP4=1,0,7,4;MQ=42;FQ=-27.5;PV4=1,1,0.083,0.27 GT:PL:GQ 0/1:139,53,60,78,0,89,87,9,37,99:10 20 10067090 . C A 222 . DP=51;AF1=1;CI95=1,1;DP4=0,0,20,27;MQ=57;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 20 10067264 . G A 222 . DP=72;AF1=1;CI95=1,1;DP4=0,0,39,32;MQ=60;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 20 10067722 . A C 215 . DP=52;AF1=1;CI95=1,1;DP4=0,0,22,29;MQ=60;FQ=-181 GT:PL:GQ 1/1:248,154,0:99 20 10068981 . G A 188 . DP=62;AF1=1;CI95=1,1;DP4=0,0,26,30;MQ=59;FQ=-196 GT:PL:GQ 1/1:221,169,0:99 20 10070602 . T C 222 . DP=71;AF1=1;CI95=1,1;DP4=0,0,35,35;MQ=59;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 20 10070936 . T A 222 . DP=66;AF1=1;CI95=1,1;DP4=0,0,42,22;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 20 10070938 . GA GAA 214 . INDEL;DP=66;AF1=1;CI95=1,1;DP4=0,0,41,23;MQ=60;FQ=-228 GT:PL:GQ 1/1:255,193,0:99 20 10071135 . C T 183 . DP=76;AF1=1;CI95=1,1;DP4=0,0,30,44;MQ=59;FQ=-250 GT:PL:GQ 1/1:216,223,0:99 20 10071187 . G A 222 . DP=83;AF1=1;CI95=1,1;DP4=0,0,29,51;MQ=60;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 20 10071890 . T C 222 . DP=56;AF1=1;CI95=1,1;DP4=0,0,26,28;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 20 10072505 . A G 222 . DP=63;AF1=1;CI95=1,1;DP4=0,0,33,26;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 20 10074187 . A G 222 . DP=77;AF1=1;CI95=1,1;DP4=0,0,33,42;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 20 10074240 . T C 222 . DP=85;AF1=1;CI95=1,1;DP4=0,0,45,35;MQ=60;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 20 10074716 . G A 222 . DP=67;AF1=1;CI95=1,1;DP4=0,0,22,40;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 20 10074806 . G A 222 . DP=71;AF1=1;CI95=1,1;DP4=0,0,31,38;MQ=60;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 20 10075043 . T C 187 . DP=61;AF1=1;CI95=1,1;DP4=0,0,33,23;MQ=60;FQ=-196 GT:PL:GQ 1/1:220,169,0:99 20 10075168 . C T 211 . DP=88;AF1=1;CI95=1,1;DP4=0,0,36,48;MQ=59;FQ=-280 GT:PL:GQ 1/1:244,253,0:99 20 10075508 . GAAAAAAAAAAA GAAAAAAAAAA 46.5 . INDEL;DP=77;AF1=1;CI95=1,1;DP4=0,1,27,41;MQ=59;FQ=-224;PV4=1,1,1,0.24 GT:PL:GQ 1/1:87,189,0:99 20 10076250 . A G 165 . DP=79;AF1=0.5;CI95=0.5,0.5;DP4=15,26,18,15;MQ=60;FQ=168;PV4=0.16,1e-14,1,1 GT:PL:GQ 0/1:195,0,255:99 20 10076339 . A G 120 . DP=71;AF1=0.5;CI95=0.5,0.5;DP4=13,20,16,21;MQ=59;FQ=123;PV4=0.81,1.4e-31,1,1 GT:PL:GQ 0/1:150,0,255:99 20 10076399 . G A 109 . DP=94;AF1=0.5;CI95=0.5,0.5;DP4=22,22,21,26;MQ=60;FQ=112;PV4=0.68,5.9e-63,1,0.21 GT:PL:GQ 0/1:139,0,255:99 20 10077752 . T C 225 . DP=79;AF1=0.5;CI95=0.5,0.5;DP4=16,18,16,27;MQ=60;FQ=225;PV4=0.49,1.7e-12,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10081750 . C A 120 . DP=82;AF1=0.5;CI95=0.5,0.5;DP4=23,20,18,20;MQ=60;FQ=123;PV4=0.66,1.6e-47,1,0.4 GT:PL:GQ 0/1:150,0,255:99 20 10081800 . C T 225 . DP=67;AF1=0.5;CI95=0.5,0.5;DP4=25,9,17,16;MQ=60;FQ=225;PV4=0.08,0.15,1,0.16 GT:PL:GQ 0/1:255,0,255:99 20 10082892 . C T 216 . DP=42;AF1=1;CI95=1,1;DP4=0,0,16,21;MQ=60;FQ=-138 GT:PL:GQ 1/1:249,111,0:99 20 10085211 . A T 162 . DP=75;AF1=0.5;CI95=0.5,0.5;DP4=21,20,17,17;MQ=60;FQ=165;PV4=1,1.8e-20,1,0.3 GT:PL:GQ 0/1:192,0,255:99 20 10086110 . G A 225 . DP=80;AF1=0.5;CI95=0.5,0.5;DP4=24,19,18,18;MQ=59;FQ=225;PV4=0.66,1,0.45,1 GT:PL:GQ 0/1:255,0,255:99 20 10086283 . G T 128 . DP=84;AF1=0.5;CI95=0.5,0.5;DP4=30,22,16,16;MQ=60;FQ=131;PV4=0.51,5.6e-22,1,1 GT:PL:GQ 0/1:158,0,255:99 20 10086619 . T A 10.4 . DP=71;AF1=0.5;CI95=0.5,0.5;DP4=18,26,9,16;MQ=60;FQ=13.2;PV4=0.8,1.9e-35,0.093,0.46 GT:PL:GQ 0/1:40,0,255:42 20 10086853 . G A 225 . DP=73;AF1=0.5;CI95=0.5,0.5;DP4=20,20,16,14;MQ=60;FQ=225;PV4=0.81,1,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10086954 . G A 225 . DP=67;AF1=0.5;CI95=0.5,0.5;DP4=15,18,20,12;MQ=60;FQ=225;PV4=0.22,1,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10087230 . A G 156 . DP=92;AF1=0.5;CI95=0.5,0.5;DP4=21,18,22,31;MQ=59;FQ=159;PV4=0.29,5.3e-54,1,1 GT:PL:GQ 0/1:186,0,255:99 20 10087394 . T G 197 . DP=83;AF1=0.5;CI95=0.5,0.5;DP4=21,14,22,23;MQ=60;FQ=200;PV4=0.37,6.2e-35,1,1 GT:PL:GQ 0/1:227,0,255:99 20 10087754 . T G 120 . DP=77;AF1=0.5;CI95=0.5,0.5;DP4=22,14,23,16;MQ=60;FQ=123;PV4=1,1.2e-38,1,1 GT:PL:GQ 0/1:150,0,255:99 20 10087804 . C T 225 . DP=96;AF1=0.5;CI95=0.5,0.5;DP4=32,17,28,17;MQ=60;FQ=225;PV4=0.83,1,0.15,0.46 GT:PL:GQ 0/1:255,0,255:99 20 10087820 . CAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGA CAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGA 217 . INDEL;DP=90;AF1=0.5;CI95=0.5,0.5;DP4=17,18,15,7;MQ=59;FQ=217;PV4=0.18,1,0.3,1 GT:PL:GQ 0/1:255,0,255:99 20 10088063 . C T 225 . DP=86;AF1=0.5;CI95=0.5,0.5;DP4=23,22,14,24;MQ=60;FQ=225;PV4=0.27,1,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10088699 . C T 220 . DP=65;AF1=0.5;CI95=0.5,0.5;DP4=16,20,19,7;MQ=55;FQ=222;PV4=0.038,1,0.00039,0.034 GT:PL:GQ 0/1:250,0,255:99 20 10088730 . G A 136 . DP=57;AF1=0.5;CI95=0.5,0.5;DP4=11,18,19,7;MQ=52;FQ=139;PV4=0.014,3.5e-11,2.2e-09,1 GT:PL:GQ 0/1:166,0,255:99 20 10088736 . A C 178 . DP=59;AF1=0.5;CI95=0.5,0.5;DP4=8,18,18,11;MQ=50;FQ=181;PV4=0.031,3.7e-09,4.5e-08,1 GT:PL:GQ 0/1:208,0,255:99 20 10088747 . A G 179 . DP=55;AF1=0.5;CI95=0.5,0.5;DP4=10,15,19,11;MQ=51;FQ=182;PV4=0.11,1.5e-11,3.7e-08,1 GT:PL:GQ 0/1:209,0,255:99 20 10088799 . G A 225 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=14,8,11,19;MQ=54;FQ=193;PV4=0.091,1,0.00092,1 GT:PL:GQ 0/1:255,0,220:99 20 10088895 . C T 110 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=10,13,6,9;MQ=58;FQ=113;PV4=1,0.001,1,1 GT:PL:GQ 0/1:140,0,250:99 20 10088968 . CAAAAAAAAAAA CAAAAAAAAAAAAAA 114 . INDEL;DP=66;AF1=0.5005;CI95=0.5,0.5;DP4=15,12,9,11;MQ=54;FQ=-8.23;PV4=0.56,1,7.9e-08,1 GT:PL:GQ 0/1:152,0,27:30 20 10088980 . T C 10.4 . DP=67;AF1=0.5;CI95=0.5,0.5;DP4=18,17,8,2;MQ=56;FQ=13.2;PV4=0.15,2.6e-06,7.2e-06,1 GT:PL:GQ 0/1:40,0,255:42 20 10088985 . T C 153 . DP=72;AF1=0.5;CI95=0.5,0.5;DP4=21,18,14,13;MQ=52;FQ=156;PV4=1,4.5e-08,1.5e-09,1 GT:PL:GQ 0/1:183,0,255:99 20 10089441 . A G 178 . DP=75;AF1=0.5;CI95=0.5,0.5;DP4=18,18,14,23;MQ=60;FQ=181;PV4=0.35,4.7e-32,0.16,1 GT:PL:GQ 0/1:208,0,255:99 20 10089525 . C T 182 . DP=83;AF1=0.5;CI95=0.5,0.5;DP4=21,17,20,24;MQ=59;FQ=185;PV4=0.51,1.4e-06,1,1 GT:PL:GQ 0/1:212,0,255:99 20 10090764 . A G 170 . DP=67;AF1=0.5;CI95=0.5,0.5;DP4=14,23,15,14;MQ=59;FQ=173;PV4=0.32,4.5e-16,1,1 GT:PL:GQ 0/1:200,0,255:99 20 10090970 . T C 140 . DP=70;AF1=0.5;CI95=0.5,0.5;DP4=20,13,19,16;MQ=60;FQ=143;PV4=0.63,1.5e-19,1,1 GT:PL:GQ 0/1:170,0,255:99 20 10091214 . C T 184 . DP=74;AF1=0.5;CI95=0.5,0.5;DP4=12,24,14,21;MQ=60;FQ=187;PV4=0.63,3.7e-12,1,1 GT:PL:GQ 0/1:214,0,255:99 20 10092415 . A G 128 . DP=100;AF1=0.5;CI95=0.5,0.5;DP4=27,24,22,23;MQ=60;FQ=131;PV4=0.84,4.4e-58,1,1 GT:PL:GQ 0/1:158,0,255:99 20 10093923 . T A 225 . DP=65;AF1=0.5;CI95=0.5,0.5;DP4=17,16,14,16;MQ=59;FQ=225;PV4=0.8,0.027,0.23,0.028 GT:PL:GQ 0/1:255,0,255:99 20 10094251 . T A 185 . DP=63;AF1=0.5;CI95=0.5,0.5;DP4=10,15,22,13;MQ=60;FQ=188;PV4=0.12,1.3e-09,1,1 GT:PL:GQ 0/1:215,0,255:99 20 10094582 . A G 225 . DP=65;AF1=0.5;CI95=0.5,0.5;DP4=18,19,15,13;MQ=60;FQ=225;PV4=0.8,0.054,1,0.42 GT:PL:GQ 0/1:255,0,255:99 20 10094774 . C T 225 . DP=74;AF1=0.5;CI95=0.5,0.5;DP4=24,15,21,12;MQ=60;FQ=225;PV4=1,0.32,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10095432 . GTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAT GTGATGATGATGATGATGATGATGATGATGATGATGAT 216 . INDEL;DP=69;AF1=0.5;CI95=0.5,0.5;DP4=11,8,13,7;MQ=49;FQ=217;PV4=0.75,1,1.7e-12,1 GT:PL:GQ 0/1:254,0,255:99 20 10095741 . A G 145 . DP=71;AF1=0.5;CI95=0.5,0.5;DP4=15,21,18,14;MQ=58;FQ=148;PV4=0.33,5.5e-24,0.015,0.24 GT:PL:GQ 0/1:175,0,255:99 20 10096293 . C T 89 . DP=73;AF1=0.5;CI95=0.5,0.5;DP4=19,15,20,17;MQ=60;FQ=92;PV4=1,1.2e-43,1,0.4 GT:PL:GQ 0/1:119,0,255:99 20 10096596 . C T 175 . DP=84;AF1=0.5;CI95=0.5,0.5;DP4=18,20,22,23;MQ=59;FQ=178;PV4=1,8e-20,1,1 GT:PL:GQ 0/1:205,0,255:99 20 10096768 . A C 113 . DP=87;AF1=0.5;CI95=0.5,0.5;DP4=25,17,22,21;MQ=59;FQ=116;PV4=0.52,6.2e-42,0.042,1 GT:PL:GQ 0/1:143,0,255:99 20 10096899 . G T 74 . DP=79;AF1=0.5;CI95=0.5,0.5;DP4=19,20,10,25;MQ=60;FQ=77;PV4=0.097,2.1e-55,0.15,1 GT:PL:GQ 0/1:104,0,255:99 20 10096905 . TAA TA 217 . INDEL;DP=81;AF1=0.5;CI95=0.5,0.5;DP4=20,19,12,29;MQ=60;FQ=217;PV4=0.067,9.7e-59,0.17,1 GT:PL:GQ 0/1:255,0,255:99 20 10096933 . G C 225 . DP=84;AF1=0.5;CI95=0.5,0.5;DP4=28,16,11,27;MQ=60;FQ=225;PV4=0.0021,0.031,0.14,1 GT:PL:GQ 0/1:255,0,255:99 20 10096958 . G A 169 . DP=90;AF1=0.5;CI95=0.5,0.5;DP4=27,17,14,28;MQ=60;FQ=172;PV4=0.011,1.1e-22,0.15,0.098 GT:PL:GQ 0/1:199,0,255:99 20 10097075 . T G 135 . DP=91;AF1=0.5;CI95=0.5,0.5;DP4=18,26,23,19;MQ=58;FQ=138;PV4=0.28,3.7e-32,0.001,1 GT:PL:GQ 0/1:165,0,255:99 20 10097101 . CTTTTTTTTTT CTTTTTTTTTTTTT,CTTTTTTTTTTTTTT 187 . INDEL;DP=75;AF1=0.5008;CI95=0.5,0.5;DP4=21,11,16,15;MQ=56;FQ=-9.98;PV4=0.31,1,0.00021,1 GT:PL:GQ 0/1:225,0,25,251,36,220:28 20 10097437 . T C 23 . DP=64;AF1=0.5;CI95=0.5,0.5;DP4=14,29,3,14;MQ=56;FQ=26;PV4=0.35,7.4e-15,1.7e-09,0.01 GT:PL:GQ 0/1:53,0,255:56 20 10097437 . TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT 44.4 . INDEL;DP=64;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:84,9,0:16 20 10097626 . C A 135 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=8,19,7,11;MQ=59;FQ=138;PV4=0.54,2.4e-08,0.11,1 GT:PL:GQ 0/1:165,0,255:99 20 10097789 . T C 96 . DP=59;AF1=0.5;CI95=0.5,0.5;DP4=14,20,14,9;MQ=58;FQ=99;PV4=0.18,3e-22,0.0019,1 GT:PL:GQ 0/1:126,0,255:99 20 10097928 . G A 155 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=9,8,7,11;MQ=58;FQ=158;PV4=0.51,9.9e-14,0.041,0.32 GT:PL:GQ 0/1:185,0,255:99 20 10098110 . G C 167 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=0,19,2,15;MQ=59;FQ=117;PV4=0.22,1,0.066,0.34 GT:PL:GQ 0/1:197,0,144:99 20 10098135 . C A 30 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=0,24,1,9;MQ=59;FQ=33;PV4=0.29,5.4e-16,0.26,1 GT:PL:GQ 0/1:60,0,155:63 20 10098219 . TATATATA T 40.5 . INDEL;DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,6;MQ=53;FQ=43.5;PV4=1,1,0.0034,1 GT:PL:GQ 0/1:78,0,248:81 20 10098265 . T C 18.1 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=44;FQ=10.1;PV4=1,0.49,0,1 GT:PL:GQ 0/1:48,0,37:40 20 10098885 . C CA 28.5 . INDEL;DP=30;AF1=0.5;CI95=0.5,0.5;DP4=16,1,12,1;MQ=50;FQ=31;PV4=1,1,1.5e-08,0.19 GT:PL:GQ 0/1:66,0,75:68 20 10098945 . T C 70 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=7,0,12,0;MQ=51;FQ=72.2;PV4=1,2.4e-05,0.0044,0.43 GT:PL:GQ 0/1:100,0,107:99 20 10098987 . C T 99 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=8,2,11,0;MQ=52;FQ=102;PV4=0.21,1,0.00051,1 GT:PL:GQ 0/1:129,0,162:99 20 10099029 . T C 36 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=14,4,8,0;MQ=55;FQ=39;PV4=0.28,3e-05,0.00013,0.37 GT:PL:GQ 0/1:66,0,244:69 20 10099034 . C A 33 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=13,5,8,0;MQ=55;FQ=36;PV4=0.28,0.0055,0.00013,0.15 GT:PL:GQ 0/1:63,0,235:66 20 10099044 . A C 42 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=12,3,5,2;MQ=51;FQ=45;PV4=1,0.006,7.8e-11,0.09 GT:PL:GQ 0/1:72,0,216:75 20 10099046 . T C 39 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=12,3,5,2;MQ=51;FQ=42;PV4=1,1e-07,7.8e-11,0.055 GT:PL:GQ 0/1:69,0,231:72 20 10099055 . T C 40 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=11,4,6,2;MQ=50;FQ=43;PV4=1,1.9e-07,3e-12,0.015 GT:PL:GQ 0/1:70,0,243:73 20 10099079 . C T 132 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=11,8,8,5;MQ=48;FQ=135;PV4=1,1,5e-13,1 GT:PL:GQ 0/1:162,0,230:99 20 10099111 . TTTTGTTTGTTTGTTTGTTT TTTTGTTTGTTTGTTTGTTTGTTTGTTT 217 . INDEL;DP=45;AF1=0.5;CI95=0.5,0.5;DP4=10,7,11,6;MQ=48;FQ=217;PV4=1,1,9.8e-10,1 GT:PL:GQ 0/1:255,0,255:99 20 10099190 . G T 225 . DP=63;AF1=0.5;CI95=0.5,0.5;DP4=21,12,20,10;MQ=57;FQ=225;PV4=1,0.32,0.0003,0.3 GT:PL:GQ 0/1:255,0,255:99 20 10099220 . A G 129 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=15,10,10,8;MQ=58;FQ=132;PV4=1,3.6e-12,0.0075,1 GT:PL:GQ 0/1:159,0,255:99 20 10099250 . G A 162 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=11,4,11,9;MQ=57;FQ=152;PV4=0.31,0.00099,0.02,1 GT:PL:GQ 0/1:192,0,179:99 20 10099535 . G A 225 . DP=64;AF1=0.5;CI95=0.5,0.5;DP4=16,9,22,17;MQ=59;FQ=190;PV4=0.61,1,0.13,0.27 GT:PL:GQ 0/1:255,0,217:99 20 10099565 . C T 150 . DP=67;AF1=0.5;CI95=0.5,0.5;DP4=22,8,21,16;MQ=60;FQ=153;PV4=0.2,2.1e-25,0.19,1 GT:PL:GQ 0/1:180,0,255:99 20 10099755 . C T 117 . DP=63;AF1=0.5;CI95=0.5,0.5;DP4=19,12,16,14;MQ=60;FQ=120;PV4=0.61,7.2e-34,0.16,0.19 GT:PL:GQ 0/1:147,0,255:99 20 10099832 . A G 146 . DP=69;AF1=0.5;CI95=0.5,0.5;DP4=21,16,11,17;MQ=60;FQ=149;PV4=0.21,7.5e-31,1,1 GT:PL:GQ 0/1:176,0,255:99 20 10100468 . T C 127 . DP=62;AF1=0.5;CI95=0.5,0.5;DP4=18,18,17,8;MQ=58;FQ=130;PV4=0.2,3.6e-26,0.0023,0.48 GT:PL:GQ 0/1:157,0,255:99 20 10100539 . CTTCTAGTTCT CTTCT 217 . INDEL;DP=72;AF1=0.5;CI95=0.5,0.5;DP4=20,15,19,15;MQ=50;FQ=217;PV4=1,4.6e-09,1.2e-19,1 GT:PL:GQ 0/1:255,0,255:99 20 10100845 . G C 225 . DP=75;AF1=0.5;CI95=0.5,0.5;DP4=20,19,16,20;MQ=56;FQ=225;PV4=0.65,1,3.1e-05,0.45 GT:PL:GQ 0/1:255,0,255:99 20 10101268 . TAAAAAAA TAAAAA 179 . INDEL;DP=68;AF1=0.5;CI95=0.5,0.5;DP4=19,14,16,10;MQ=59;FQ=182;PV4=0.8,0.0036,0.023,1 GT:PL:GQ 0/1:217,0,243:99 20 10101288 . A G 93 . DP=64;AF1=0.5;CI95=0.5,0.5;DP4=20,15,19,9;MQ=59;FQ=96;PV4=0.44,4.9e-26,0.056,0.48 GT:PL:GQ 0/1:123,0,255:99 20 10101674 . TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 12.7 . INDEL;DP=58;AF1=1;CI95=1,1;DP4=0,0,23,12;MQ=56;FQ=-87.5 GT:PL:GQ 1/1:255,255,202:62 20 10101880 . A G 189 . DP=85;AF1=0.5;CI95=0.5,0.5;DP4=20,16,21,26;MQ=59;FQ=192;PV4=0.38,2.3e-23,0.039,0.13 GT:PL:GQ 0/1:219,0,255:99 20 10101912 . C T 225 . DP=84;AF1=0.5;CI95=0.5,0.5;DP4=23,15,25,20;MQ=59;FQ=225;PV4=0.66,1,0.03,0.22 GT:PL:GQ 0/1:255,0,255:99 20 10102234 . C T 216 . DP=54;AF1=0.5;CI95=0.5,0.5;DP4=3,21,4,26;MQ=58;FQ=201;PV4=1,0.23,0.018,1 GT:PL:GQ 0/1:246,0,228:99 20 10102363 . A T 111 . DP=68;AF1=0.5;CI95=0.5,0.5;DP4=12,22,15,16;MQ=60;FQ=114;PV4=0.32,5.9e-51,0.15,1 GT:PL:GQ 0/1:141,0,255:99 20 10102531 . A G 5.46 . DP=36;AF1=0.4999;CI95=0.5,0.5;DP4=14,4,2,5;MQ=59;FQ=7.8;PV4=0.058,3.6e-12,0.055,1 GT:PL:GQ 0/1:34,0,252:34 20 10102727 . G T 156 . DP=67;AF1=0.5;CI95=0.5,0.5;DP4=21,14,22,10;MQ=60;FQ=159;PV4=0.61,5.4e-07,1,1 GT:PL:GQ 0/1:186,0,255:99 20 10102904 . C A 104 . DP=99;AF1=0.5;CI95=0.5,0.5;DP4=21,24,27,25;MQ=60;FQ=107;PV4=0.69,2.3e-40,0.096,1 GT:PL:GQ 0/1:134,0,255:99 20 10103110 . G C 225 . DP=77;AF1=0.5;CI95=0.5,0.5;DP4=13,20,19,25;MQ=60;FQ=225;PV4=0.82,0.02,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10103301 . C T 161 . DP=70;AF1=0.5;CI95=0.5,0.5;DP4=18,24,13,15;MQ=60;FQ=164;PV4=0.81,1.4e-17,0.041,1 GT:PL:GQ 0/1:191,0,255:99 20 10103320 . G C 108 . DP=60;AF1=0.5;CI95=0.5,0.5;DP4=16,19,12,10;MQ=60;FQ=111;PV4=0.59,7.3e-11,0.036,1 GT:PL:GQ 0/1:138,0,255:99 20 10103333 . G A 225 . DP=58;AF1=0.5;CI95=0.5,0.5;DP4=12,19,16,11;MQ=60;FQ=225;PV4=0.19,1,0.064,1 GT:PL:GQ 0/1:255,0,255:99 20 10103552 . T G 161 . DP=77;AF1=0.5;CI95=0.5,0.5;DP4=19,20,24,12;MQ=59;FQ=164;PV4=0.16,1.4e-21,0.025,1 GT:PL:GQ 0/1:191,0,255:99 20 10103680 . G T 128 . DP=78;AF1=0.5;CI95=0.5,0.5;DP4=21,18,17,22;MQ=59;FQ=131;PV4=0.5,1e-20,0.38,0.17 GT:PL:GQ 0/1:158,0,255:99 20 10103751 . G T 121 . DP=60;AF1=0.5;CI95=0.5,0.5;DP4=13,15,17,13;MQ=59;FQ=124;PV4=0.6,1.2e-19,0.18,1 GT:PL:GQ 0/1:151,0,255:99 20 10103828 . T A 180 . DP=67;AF1=0.5;CI95=0.5,0.5;DP4=14,20,16,17;MQ=58;FQ=183;PV4=0.63,3.2e-30,1,1 GT:PL:GQ 0/1:210,0,255:99 20 10104018 . C T 172 . DP=73;AF1=0.5;CI95=0.5,0.5;DP4=22,15,22,13;MQ=59;FQ=175;PV4=0.81,1.9e-11,0.39,0.12 GT:PL:GQ 0/1:202,0,255:99 20 10104352 . A G 189 . DP=82;AF1=0.5;CI95=0.5,0.5;DP4=15,21,22,22;MQ=59;FQ=192;PV4=0.5,5.4e-19,1,0.13 GT:PL:GQ 0/1:219,0,255:99 20 10104593 . G C 225 . DP=64;AF1=0.5;CI95=0.5,0.5;DP4=17,21,11,14;MQ=60;FQ=225;PV4=1,0.03,0.11,1 GT:PL:GQ 0/1:255,0,255:99 20 10104648 . AGG AG 217 . INDEL;DP=58;AF1=0.5;CI95=0.5,0.5;DP4=10,21,8,18;MQ=59;FQ=217;PV4=1,2.8e-12,0.043,0.28 GT:PL:GQ 0/1:255,0,255:99 20 10104694 . T G 190 . DP=64;AF1=0.5;CI95=0.5,0.5;DP4=8,21,14,21;MQ=60;FQ=193;PV4=0.43,7.5e-22,1,1 GT:PL:GQ 0/1:220,0,255:99 20 10105066 . GA G 217 . INDEL;DP=46;AF1=0.5;CI95=0.5,0.5;DP4=13,8,9,15;MQ=60;FQ=217;PV4=0.14,0.02,0.18,0.28 GT:PL:GQ 0/1:255,0,255:99 20 10105077 . G A 142 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=13,7,11,11;MQ=60;FQ=145;PV4=0.37,5.5e-07,0.12,1 GT:PL:GQ 0/1:172,0,222:99 20 10105095 . A T 130 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=15,3,12,11;MQ=60;FQ=133;PV4=0.051,8e-14,0.14,0.3 GT:PL:GQ 0/1:160,0,201:99 20 10105234 . A T 174 . DP=63;AF1=0.5;CI95=0.5,0.5;DP4=14,19,15,15;MQ=60;FQ=177;PV4=0.62,3.3e-24,0.15,1 GT:PL:GQ 0/1:204,0,255:99 20 10105358 . A G 182 . DP=71;AF1=0.5;CI95=0.5,0.5;DP4=20,14,20,13;MQ=60;FQ=185;PV4=1,1.8e-26,0.12,1 GT:PL:GQ 0/1:212,0,255:99 20 10106404 . T C 152 . DP=64;AF1=0.5;CI95=0.5,0.5;DP4=22,17,12,13;MQ=59;FQ=155;PV4=0.61,1.3e-18,0.38,1 GT:PL:GQ 0/1:182,0,255:99 20 10106429 . C A 54 . DP=73;AF1=0.5;CI95=0.5,0.5;DP4=20,19,15,15;MQ=60;FQ=57;PV4=1,2.6e-42,1,0.022 GT:PL:GQ 0/1:84,0,255:87 20 10106802 . G A 225 . DP=79;AF1=0.5;CI95=0.5,0.5;DP4=21,18,18,22;MQ=60;FQ=225;PV4=0.5,1,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10106858 . C G 170 . DP=68;AF1=0.5;CI95=0.5,0.5;DP4=20,17,14,16;MQ=60;FQ=173;PV4=0.63,1.6e-08,1,0.39 GT:PL:GQ 0/1:200,0,255:99 20 10106889 . C T 225 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=11,15,10,12;MQ=60;FQ=225;PV4=1,0.32,1,0.13 GT:PL:GQ 0/1:255,0,255:99 20 10107047 . AG A 217 . INDEL;DP=78;AF1=0.5;CI95=0.5,0.5;DP4=13,24,20,21;MQ=60;FQ=217;PV4=0.26,9.5e-20,0.17,1 GT:PL:GQ 0/1:255,0,255:99 20 10107052 . C T 102 . DP=79;AF1=0.5;CI95=0.5,0.5;DP4=14,25,19,19;MQ=60;FQ=105;PV4=0.25,4.7e-34,0.16,1 GT:PL:GQ 0/1:132,0,255:99 20 10107331 . GTTTTTTTTTTTT GTTTTTTTTTTTTTT,GTTTTTTTTTTTTTTT 56 . INDEL;DP=63;AF1=0.5718;CI95=0.5,1;DP4=10,7,14,13;MQ=60;FQ=-28.5;PV4=0.76,1,1,1 GT:PL:GQ 0/1:93,0,6,109,30,90:9 20 10107686 . C T 225 . DP=75;AF1=0.5;CI95=0.5,0.5;DP4=17,15,29,13;MQ=59;FQ=225;PV4=0.23,1,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10108754 . T G 225 . DP=91;AF1=0.5;CI95=0.5,0.5;DP4=23,24,25,19;MQ=60;FQ=225;PV4=0.53,0.01,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10108866 . C T 136 . DP=74;AF1=0.5;CI95=0.5,0.5;DP4=26,13,19,12;MQ=60;FQ=139;PV4=0.8,1.1e-32,1,1 GT:PL:GQ 0/1:166,0,255:99 20 10108941 . T C 176 . DP=60;AF1=0.5;CI95=0.5,0.5;DP4=15,17,11,15;MQ=59;FQ=179;PV4=0.79,7.6e-07,0.44,0.008 GT:PL:GQ 0/1:206,0,255:99 20 10109709 . C G 187 . DP=64;AF1=0.5;CI95=0.5,0.5;DP4=15,17,11,20;MQ=60;FQ=190;PV4=0.45,2.2e-16,0.16,0.46 GT:PL:GQ 0/1:217,0,255:99 20 10110726 . GTTTTT GTTTT 108 . INDEL;DP=71;AF1=0.5;CI95=0.5,0.5;DP4=11,19,14,20;MQ=60;FQ=100;PV4=0.8,2.9e-06,1,1 GT:PL:GQ 0/1:146,0,135:99 20 10111346 . A G 146 . DP=72;AF1=0.5;CI95=0.5,0.5;DP4=18,21,15,16;MQ=59;FQ=149;PV4=1,2.2e-29,0.44,1 GT:PL:GQ 0/1:176,0,255:99 20 10111701 . C A 96 . DP=74;AF1=0.5;CI95=0.5,0.5;DP4=17,19,13,19;MQ=60;FQ=99;PV4=0.63,7.7e-27,1,1 GT:PL:GQ 0/1:126,0,255:99 20 10111705 . T A 107 . DP=74;AF1=0.5;CI95=0.5,0.5;DP4=18,20,15,20;MQ=60;FQ=110;PV4=0.81,1.4e-46,1,1 GT:PL:GQ 0/1:137,0,255:99 20 10111919 . A G 225 . DP=93;AF1=0.5;CI95=0.5,0.5;DP4=15,30,22,25;MQ=60;FQ=225;PV4=0.21,0.42,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10112391 . G T 145 . DP=49;AF1=0.5;CI95=0.5,0.5;DP4=18,10,12,8;MQ=60;FQ=148;PV4=0.77,3.7e-06,1,0.33 GT:PL:GQ 0/1:175,0,255:99 20 10112869 . T C 179 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=13,9,9,9;MQ=60;FQ=182;PV4=0.75,1e-06,1,0.34 GT:PL:GQ 0/1:209,0,255:99 20 10113421 . G A 83 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=3,18,4,15;MQ=59;FQ=86;PV4=0.69,2.4e-10,1,1 GT:PL:GQ 0/1:113,0,204:99 20 10113638 . G C 225 . DP=73;AF1=0.5;CI95=0.5,0.5;DP4=18,16,23,14;MQ=59;FQ=225;PV4=0.48,1,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10114045 . T A 20 . DP=84;AF1=0.5;CI95=0.5,0.5;DP4=22,20,4,18;MQ=60;FQ=23;PV4=0.015,1.9e-37,0.084,1 GT:PL:GQ 0/1:50,0,255:53 20 10115097 . C G 119 . DP=72;AF1=0.5;CI95=0.5,0.5;DP4=16,21,21,14;MQ=60;FQ=122;PV4=0.17,1.7e-34,1,1 GT:PL:GQ 0/1:149,0,255:99 20 10115325 . C T 122 . DP=74;AF1=0.5;CI95=0.5,0.5;DP4=24,16,17,16;MQ=60;FQ=125;PV4=0.49,3.3e-33,1,1 GT:PL:GQ 0/1:152,0,255:99 20 10115599 . C A 117 . DP=59;AF1=0.5;CI95=0.5,0.5;DP4=14,18,11,14;MQ=60;FQ=120;PV4=1,2.4e-34,0.13,0.06 GT:PL:GQ 0/1:147,0,255:99 20 10119749 . G A 133 . DP=93;AF1=0.5;CI95=0.5,0.5;DP4=26,31,15,17;MQ=60;FQ=136;PV4=1,4.1e-10,0.092,0.15 GT:PL:GQ 0/1:163,0,255:99 20 10120207 . CAGG CAGGCCACAAAGG 208 . INDEL;DP=55;AF1=0.5;CI95=0.5,0.5;DP4=13,14,13,9;MQ=50;FQ=211;PV4=0.57,1,4.8e-21,1 GT:PL:GQ 0/1:246,0,255:99 20 10120854 . G T 172 . DP=71;AF1=0.5;CI95=0.5,0.5;DP4=19,12,24,15;MQ=60;FQ=175;PV4=1,8e-07,1,1 GT:PL:GQ 0/1:202,0,252:99 20 10121178 . C T 225 . DP=66;AF1=0.5;CI95=0.5,0.5;DP4=20,15,9,19;MQ=60;FQ=225;PV4=0.075,0.27,1,0.1 GT:PL:GQ 0/1:255,0,255:99 20 10121202 . C A 105 . DP=81;AF1=0.5;CI95=0.5,0.5;DP4=24,22,17,15;MQ=60;FQ=108;PV4=1,2.1e-41,1,1 GT:PL:GQ 0/1:135,0,255:99 20 10121272 . G A 225 . DP=84;AF1=0.5;CI95=0.5,0.5;DP4=24,20,23,16;MQ=59;FQ=225;PV4=0.82,0.096,1,0.3 GT:PL:GQ 0/1:255,0,255:99 20 10121684 . C T 120 . DP=92;AF1=0.5;CI95=0.5,0.5;DP4=16,23,24,28;MQ=60;FQ=123;PV4=0.67,3.1e-35,0.19,1 GT:PL:GQ 0/1:150,0,255:99 20 10122275 . A G 127 . DP=83;AF1=0.5;CI95=0.5,0.5;DP4=28,21,18,15;MQ=60;FQ=130;PV4=0.82,2.5e-27,1,0.22 GT:PL:GQ 0/1:157,0,255:99 20 10122669 . G T 98 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=18,10,6,17;MQ=57;FQ=101;PV4=0.011,8.4e-18,0.27,0.42 GT:PL:GQ 0/1:128,0,255:99 20 10122672 . A G 124 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=18,9,5,17;MQ=57;FQ=127;PV4=0.0037,3.4e-14,0.26,0.24 GT:PL:GQ 0/1:154,0,255:99 20 10124075 . G C 180 . DP=63;AF1=0.5;CI95=0.5,0.5;DP4=16,15,12,19;MQ=60;FQ=183;PV4=0.44,1.1e-12,1,1 GT:PL:GQ 0/1:210,0,255:99 20 10124267 . C T 225 . DP=79;AF1=0.5;CI95=0.5,0.5;DP4=17,21,18,21;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10126398 . T A 225 . DP=85;AF1=0.5;CI95=0.5,0.5;DP4=19,19,28,18;MQ=60;FQ=225;PV4=0.38,1,1,1 GT:PL:GQ 0/1:255,0,255:99 20 10128634 . T G 192 . DP=93;AF1=0.5;CI95=0.5,0.5;DP4=19,34,12,28;MQ=60;FQ=195;PV4=0.66,7.6e-24,0.13,0.086 GT:PL:GQ 0/1:222,0,255:99 20 10128652 . T C 222 . DP=99;AF1=1;CI95=1,1;DP4=0,0,31,67;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 20 10129396 . A G 145 . DP=76;AF1=0.5;CI95=0.5,0.5;DP4=13,27,17,19;MQ=60;FQ=148;PV4=0.24,8e-27,1,0.41 GT:PL:GQ 0/1:175,0,255:99 20 10129600 . A G 222 . DP=93;AF1=1;CI95=1,1;DP4=0,0,44,46;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 20 10130017 . G A 202 . DP=90;AF1=1;CI95=1,1;DP4=0,0,47,35;MQ=57;FQ=-274 GT:PL:GQ 1/1:235,247,0:99 20 10130306 . ATGTGTGTGTGTG ATGTGTGTGTGTGTG 217 . INDEL;DP=55;AF1=0.5;CI95=0.5,0.5;DP4=6,28,5,6;MQ=58;FQ=217;PV4=0.1,1,0.00054,1 GT:PL:GQ 0/1:255,0,255:99 20 10130345 . GTATATATATATA GTATATATATATATA 217 . INDEL;DP=57;AF1=0.5;CI95=0.5,0.5;DP4=10,23,10,2;MQ=59;FQ=217;PV4=0.0023,1,0.23,0.017 GT:PL:GQ 0/1:255,0,255:99 20 10130722 . G A 225 . DP=74;AF1=0.5;CI95=0.5,0.5;DP4=15,22,23,14;MQ=55;FQ=225;PV4=0.1,1,0.0028,1 GT:PL:GQ 0/1:255,0,255:99 20 10130767 . ATGTATGTGTATGT ATGTATGT 170 . INDEL;DP=52;AF1=0.5;CI95=0.5,0.5;DP4=6,16,10,5;MQ=51;FQ=173;PV4=0.023,0.00017,2.8e-06,0.092 GT:PL:GQ 0/1:208,0,255:99 20 10130775 . G A 4.77 . DP=42;AF1=0.4999;CI95=0.5,0.5;DP4=6,16,2,2;MQ=57;FQ=6.99;PV4=0.56,0.48,0.059,0.061 GT:PL:GQ 0/1:33,0,253:33 20 10130794 . G A 3.01 . DP=41;AF1=0.4997;CI95=0.5,0.5;DP4=14,18,4,5;MQ=43;FQ=4.77;PV4=1,1,0.027,1 GT:PL:GQ 0/1:30,0,247:28 20 10130804 . G A 13.2 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=12,18,5,6;MQ=39;FQ=16.1;PV4=1,1,0.044,1 GT:PL:GQ 0/1:43,0,234:46 20 10131196 . T C 222 . DP=45;AF1=1;CI95=1,1;DP4=0,0,20,23;MQ=58;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 20 10131980 . T C 222 . DP=65;AF1=1;CI95=1,1;DP4=0,0,31,33;MQ=58;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 20 10131998 . G A 189 . DP=59;AF1=0.5;CI95=0.5,0.5;DP4=13,13,11,20;MQ=57;FQ=192;PV4=0.29,3.8e-08,1,0.32 GT:PL:GQ 0/1:219,0,255:99 20 10132023 . T C 213 . DP=56;AF1=0.5;CI95=0.5,0.5;DP4=12,13,10,21;MQ=57;FQ=216;PV4=0.28,8.5e-08,1,1 GT:PL:GQ 0/1:243,0,255:99 20 10132091 . A G 148 . DP=57;AF1=0.5;CI95=0.5,0.5;DP4=16,13,12,14;MQ=59;FQ=151;PV4=0.59,7.3e-22,0.47,0.39 GT:PL:GQ 0/1:178,0,255:99 20 10132301 . GACACACACACACACACACACACACACA GACACACACACACACACA 214 . INDEL;DP=48;AF1=0.5;CI95=0.5,0.5;DP4=13,5,10,10;MQ=47;FQ=216;PV4=0.2,0.066,1.5e-11,1 GT:PL:GQ 0/1:252,0,255:99 20 10132340 . A G 222 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=13,12,15,11;MQ=50;FQ=223;PV4=0.78,0.011,0.0014,0.45 GT:PL:GQ 0/1:252,0,255:99 20 10132682 . ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG ATGTGTGTGTGTGTGTGTGTGTGTG 112 . INDEL;DP=57;AF1=0.5;CI95=0.5,0.5;DP4=4,1,11,3;MQ=41;FQ=115;PV4=1,1,3.9e-07,1 GT:PL:GQ 0/1:150,0,164:99 20 10132719 . TGA TGAGAGAGAGAGAGAGAGAGAGA 35.5 . INDEL;DP=39;AF1=0.5;CI95=0.5,0.5;DP4=6,6,0,3;MQ=51;FQ=38.5;PV4=0.23,1,1,0.00045 GT:PL:GQ 0/1:73,0,255:76 20 10132722 . CAGAGAGAGAGAGAGAGAGAGAGAGAGAGA CAGAGAGAGAGAGAGAGAGAGAGAGAGA 138 . INDEL;DP=39;AF1=1;CI95=1,1;DP4=0,0,5,10;MQ=55;FQ=-67.5 GT:PL:GQ 1/1:255,109,76:63 20 10134410 . AAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG AAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 155 . INDEL;DP=66;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:195,12,0:21 20 10134479 . A C 74 . DP=69;AF1=0.5;CI95=0.5,0.5;DP4=22,6,22,2;MQ=60;FQ=77;PV4=0.26,5.4e-17,0.14,0.31 GT:PL:GQ 0/1:104,0,255:99 20 10154221 . CAGTCCTCCAA CAGTCCTCCAAGTCCTCCAA 217 . INDEL;DP=52;AF1=0.5;CI95=0.5,0.5;DP4=19,9,9,7;MQ=55;FQ=217;PV4=0.52,1,2.1e-08,0.21 GT:PL:GQ 0/1:255,0,255:99 20 10155038 . ATTT ATTTT 122 . INDEL;DP=13;AF1=1;CI95=1,1;DP4=0,0,5,2;MQ=53;FQ=-55.5 GT:PL:GQ 1/1:162,21,0:39 20 10155043 . CTTTTTT CTTTTTTT 4.39 . INDEL;DP=12;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:42,9,0:8 20 10155105 . G A 103 . DP=60;AF1=0.5;CI95=0.5,0.5;DP4=12,13,22,13;MQ=59;FQ=106;PV4=0.3,2.8e-34,0.12,1 GT:PL:GQ 0/1:133,0,255:99 20 10157869 . GAAAAAAAAAAAA GAAAAAAAAAA,GAAAAAAAAAAA 77.5 . INDEL;DP=74;AF1=1;CI95=1,1;DP4=1,0,23,42;MQ=60;FQ=-122;PV4=0.36,1,1,1 GT:PL:GQ 1/1:139,108,21,192,0,108:99 20 10158589 . AAGAGAGA AAGAGAGAGA 217 . INDEL;DP=68;AF1=0.5;CI95=0.5,0.5;DP4=14,22,18,10;MQ=60;FQ=217;PV4=0.077,1,0.13,0.069 GT:PL:GQ 0/1:255,0,255:99 20 10159081 . A G 203 . DP=78;AF1=0.5;CI95=0.5,0.5;DP4=17,14,18,27;MQ=60;FQ=206;PV4=0.25,1e-20,1,0.09 GT:PL:GQ 0/1:233,0,255:99 20 10159214 . A G 225 . DP=67;AF1=0.5;CI95=0.5,0.5;DP4=9,27,16,13;MQ=60;FQ=225;PV4=0.021,0.48,1,0.22 GT:PL:GQ 0/1:255,0,255:99 20 10160092 . A G 154 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=9,13,10,16;MQ=60;FQ=157;PV4=1,1.2e-31,1,0.34 GT:PL:GQ 0/1:184,0,255:99 20 10160773 . A AC 66.5 . INDEL;DP=71;AF1=0.5;CI95=0.5,0.5;DP4=30,12,19,9;MQ=60;FQ=69.5;PV4=0.79,1,1,0.4 GT:PL:GQ 0/1:104,0,127:99