4.0.0 org.broadinstitute.gatk gatk-aggregator 3.2-SNAPSHOT ../.. gatk-queue-extensions-distribution jar GATK Queue Extensions Distribution ${project.basedir}/../.. ${project.build.directory}/generated-sources/gatk-extensions ${gatk.basedir}/public/gatk-queue-extensions-public ${gatk.queue.extensions.public}/src/main/scala false gatk-queue-package-distribution ${project.groupId} gatk-tools-protected ${project.version} ${project.groupId} gatk-queue ${project.version} org.scala-lang scala-compiler log4j log4j ${project.groupId} gatk-queue-extensions-generator ${project.version} runtime ${project.groupId} gatk-tools-public ${project.version} test-jar test ${project.groupId} gatk-queue ${project.version} test-jar test org.codehaus.mojo exec-maven-plugin generate-gatk-extensions exec generate-sources ${gatk.generate-gatk-extensions.skipped} java -classpath org.broadinstitute.gatk.queue.extensions.gatk.GATKExtensionsGenerator -l WARN -outDir ${gatk.extensions.sources} org.codehaus.mojo build-helper-maven-plugin add-gatk-extensions add-source generate-sources ${gatk.queue.extensions.sources} ${gatk.extensions.sources} org.scala-tools maven-scala-plugin com.pyx4j maven-junction-plugin link-public-qscript process-test-resources unlink-public-qscript clean link-extensions-sources generate-sources org.apache.maven.plugins maven-invoker-plugin package-unittests package-integrationtests package-largescaletests package-knowledgebasetests package-queuetests private-testdata ${basedir}/../../private/pom.xml com.pyx4j maven-junction-plugin link-private-testdata process-test-resources unlink-private-testdata clean link-private-qscript process-test-resources unlink-private-qscript clean