[DEFAULT]
resources: resources
#dbsnp: %(resources)s/dbsnp_129_hg18.rod
dbsnp: %(resources)s/dbsnp_129_b36.rod

[R]
Rscript: /broad/tools/apps/R-2.6.0/bin/Rscript 
PlotQEmpStated: %(resources)s/plot_q_emp_stated_hst.R
PlotQDiffByCycle: %(resources)s/plot_qual_diff_v_cycle.R
PlotQDiffByDinuc: %(resources)s/plot_qual_diff_v_dinuc.R