/* * Copyright (c) 2010, The Broad Institute * * Permission is hereby granted, free of charge, to any person * obtaining a copy of this software and associated documentation * files (the "Software"), to deal in the Software without * restriction, including without limitation the rights to use, * copy, modify, merge, publish, distribute, sublicense, and/or sell * copies of the Software, and to permit persons to whom the * Software is furnished to do so, subject to the following * conditions: * * The above copyright notice and this permission notice shall be * included in all copies or substantial portions of the Software. * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, * EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES * OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND * NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT * HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, * WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR * OTHER DEALINGS IN THE SOFTWARE. */ package org.broadinstitute.sting.utils.yaml; import org.broadinstitute.sting.utils.exceptions.UserException; import org.yaml.snakeyaml.DumperOptions; import org.yaml.snakeyaml.Yaml; import org.yaml.snakeyaml.constructor.Constructor; import org.yaml.snakeyaml.nodes.Tag; import org.yaml.snakeyaml.representer.Representer; import java.io.File; import java.io.FileReader; import java.io.FileWriter; import java.io.IOException; /** * A collection of utilities for operating on YAML. * Uses the FLOW style of writing YAML, versus the BLOCK style. * By default uses a representer that prunes empty lists and maps. */ public class YamlUtils { private static Representer representer = new StingYamlRepresenter(); private static DumperOptions options = new DumperOptions(); static { options.setCanonical(false); options.setExplicitRoot(Tag.MAP); options.setDefaultFlowStyle(DumperOptions.FlowStyle.FLOW); options.setPrettyFlow(true); } /** * Serialize an object to the file system. * @param o Object to serialize. * @param file Path to write the serialized YAML. */ public static void dump(Object o, File file) { dump(o, file, representer); } /** * Serialize an object to the file system. * @param o Object to serialize. * @param file Path to write the serialized YAML. * @param representer Custom representer with rules on how to serialize YAML. */ public static void dump(Object o, File file, Representer representer) { Constructor constructor = new Constructor(o.getClass()); Yaml yaml = new Yaml(constructor, representer, options); try { yaml.dump(o, new FileWriter(file)); } catch (IOException ioe) { throw new UserException.CouldNotCreateOutputFile(file, ioe); } } /** * Deserialize an object from the file system. * @param clazz Clazz to deserialize. * @param file Path to read the deserialized YAML. * @return Object deserialized from the file system. */ public static T load(Class clazz, File file) { return load(clazz, file, representer); } /** * Deserialize an object from the file system. * @param clazz Clazz to deserialize. * @param file Path to read the deserialized YAML. * @param representer Custom representer with rules on how to deserialize YAML. * @return Object deserialized from the file system. */ @SuppressWarnings("unchecked") public static T load(Class clazz, File file, Representer representer) { Constructor constructor = new Constructor(clazz); Yaml yaml = new Yaml(constructor, representer, options); try { return (T) yaml.load(new FileReader(file)); } catch (IOException ioe) { throw new UserException.CouldNotReadInputFile(file, ioe); } } }