package org.broadinstitute.sting.queue.engine import org.jgrapht.traverse.TopologicalOrderIterator import org.jgrapht.event.{EdgeTraversalEvent, TraversalListenerAdapter} import collection.JavaConversions._ import org.broadinstitute.sting.queue.util.Logging import org.broadinstitute.sting.queue.function.{MappingFunction, CommandLineFunction, DispatchFunction, QFunction} /** * Loops over the job graph running jobs as the edges are traversed */ abstract class TopologicalJobScheduler(private val qGraph: QGraph) extends CommandLineRunner with DispatchJobRunner with Logging { protected val iterator = new TopologicalOrderIterator(this.qGraph.jobGraph) iterator.addTraversalListener(new TraversalListenerAdapter[QNode, QFunction] { override def edgeTraversed(event: EdgeTraversalEvent[QNode, QFunction]) = event.getEdge match { case f: DispatchFunction if (TopologicalJobScheduler.this.qGraph.bsubAllJobs) => dispatch(f, qGraph) case f: CommandLineFunction => run(f, qGraph) case f: MappingFunction => /* do nothing for mapping functions */ } }) def runJobs = { logger.info("Number of jobs: %s".format(this.qGraph.numJobs)) for (target <- iterator) { // Do nothing for now, let event handler respond } } }