4.0.0 org.broadinstitute.gatk gatk-aggregator 3.3-SNAPSHOT ../.. gatk-utils jar GATK Utils ${project.basedir}/../.. gatk-package-distribution org/broadinstitute/gatk/utils/R gsalib.tar.gz samtools htsjdk picard picard log4j log4j colt colt it.unimi.dsi fastutil org.simpleframework simple-xml org.reflections reflections org.slf4j slf4j-log4j12 org.freemarker freemarker org.apache.commons commons-jexl commons-lang commons-lang commons-io commons-io commons-collections commons-collections org.apache.commons commons-math net.java.dev.jna jna net.java.dev.jets3t jets3t us.levk drmaa-gridengine com.google.code.gson gson org.apache.httpcomponents httpclient com.google.code.cofoja cofoja ${project.groupId} gsalib ${project.version} tar.gz com.google.caliper caliper test org.apache.maven.plugins maven-dependency-plugin copy-gsalib copy process-resources ${project.groupId} gsalib ${project.version} tar.gz ${project.build.outputDirectory}/${gsalib.packagedir} ${gsalib.filename} org.apache.maven.plugins maven-resources-plugin copy-resource-bundle-log4j prepare-package org.apache.maven.plugins maven-invoker-plugin package-unittests package-integrationtests package-largescaletests package-knowledgebasetests package-queuetests