##fileformat=VCFv4.1 ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[/humgen/gsa-hpprojects/dev/rpoplin/haplotype_exomes/autism.trio.wex.family.bam.list] read_buffer_size=null phone_home=STANDARD read_filter=[] intervals=[org.broadinstitute.sting.commandline.IntervalBinding@57ac3379] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=250 baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=5 read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false disable_experimental_low_memory_sharding=false logging_level=INFO log_to_file=null help=false genotype_likelihoods_model=BOTH p_nonref_model=EXACT heterozygosity=0.0010 pcr_error_rate=1.0E-4 genotyping_mode=DISCOVERY output_mode=EMIT_VARIANTS_ONLY standard_min_confidence_threshold_for_calling=0.01 standard_min_confidence_threshold_for_emitting=30.0 computeSLOD=false alleles=(RodBinding name= source=UNBOUND) min_base_quality_score=17 max_deletion_fraction=0.05 min_indel_count_for_genotyping=5 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10.0 indelGapOpenPenalty=45.0 indelHaplotypeSize=80 bandedIndel=false indelDebug=false ignoreSNPAlleles=false dbsnp=(RodBinding name= source=UNBOUND) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub debug_file=null metrics_file=null annotation=[] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##reference=file:///seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT 09C100235 09C100237 09C100239 09C81476 09C81477 09C83024 09C83025 09C83026 09C86232A 09C86233A 09C86234A 09C86700 09C86701 09C89662 09C90753A 09C95041 09C95042 09C95777 09C95778 09C95779 09C96031 09C96032 09C96554 09C98400 09C98401 09C98402 09C98474 09C98475 09C98476 09C98906 09C98907 09C98911 09C98913 09C99485 09C99486 09C99487 10C101297 10C101298 10C101299 10C104458 10C104459 10C104460 1 879317 . 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G A 461.98 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.911;DP=1593;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.7126;InbreedingCoeff=-0.0121;MQ=58.76;MQ0=0;MQRankSum=0.775;QD=12.16;ReadPosRankSum=2.151 GT:AD:DP:GQ:PL 0/0:32,0:32:84.19:0,84,913 0/0:19,0:19:48.13:0,48,551 0/0:25,0:25:66.15:0,66,718 0/0:74,1:75:99:0,162,2334 0/0:78,0:78:99:0,211,2549 0/0:54,0:54:99:0,135,1731 0/0:36,0:36:93.26:0,93,1164 0/0:57,0:57:99:0,144,1778 0/0:20,0:20:60.13:0,60,645 0/0:26,0:26:72.15:0,72,773 0/0:23,0:23:60.15:0,60,678 0/0:14,0:14:39.11:0,39,454 0/0:15,0:15:39.09:0,39,436 0/0:29,0:29:81.22:0,81,918 0/0:97,0:97:99:0,268,2921 0/0:38,0:38:99:0,102,1139 0/0:31,0:31:90.25:0,90,1031 0/0:29,0:29:81.21:0,81,919 0/0:49,0:49:99:0,135,1457 0/0:66,0:66:99:0,177,1982 0/0:58,0:58:99:0,159,1774 0/0:32,0:32:84.22:0,84,952 0/0:75,0:75:99:0,202,2490 0/0:46,0:46:99:0,114,1389 0/0:52,0:52:99:0,138,1643 0/0:37,0:37:90.25:0,90,1080 0/0:25,0:25:72.19:0,72,809 0/0:22,0:22:63.13:0,63,666 0/0:26,0:26:69.15:0,69,754 0/0:42,0:42:99:0,117,1307 0/0:20,0:20:57.12:0,57,593 0/0:49,0:49:99:0,132,1525 0/0:39,0:39:99:0,102,1127 0/0:28,0:28:75.19:0,75,829 0/0:23,0:23:60.16:0,60,673 0/0:25,0:25:69.17:0,69,765 0/0:45,0:45:99:0,126,1340 0/0:22,0:23:63.16:0,63,730 0/0:34,0:34:96.27:0,96,1096 0/0:27,0:27:78.19:0,78,840 0/0:14,0:14:42.11:0,42,460 0/1:19,19:38:99:508,0,502 1 897325 . G C 114024.13 . AC=83;AF=0.988;AN=84;BaseQRankSum=3.696;DP=3528;Dels=0.00;FS=3.423;HRun=1;HaplotypeScore=2.7103;InbreedingCoeff=-0.0120;MQ=59.34;MQ0=0;MQRankSum=1.203;QD=32.32;ReadPosRankSum=1.627 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2214,178,0 1/1:0,75:75:99:2531,205,0 1/1:0,44:44:99:1520,120,0 1/1:0,152:152:99:5166,394,0 1/1:0,154:154:99:5496,415,0 1/1:0,79:79:99:2672,202,0 1/1:0,77:78:99:2443,184,0 1/1:0,105:105:99:3414,256,0 1/1:0,58:58:99:1882,147,0 1/1:0,52:52:99:1662,138,0 1/1:0,63:63:99:2090,166,0 1/1:0,67:67:99:2118,169,0 1/1:0,55:55:99:1893,150,0 1/1:0,60:61:99:2029,162,0 1/1:0,212:212:99:6468,517,0 1/1:0,55:56:99:1754,141,0 1/1:0,72:72:99:2405,199,0 1/1:0,51:51:99:1684,132,0 1/1:1,134:135:99:4101,337,0 1/1:0,146:146:99:4807,379,0 1/1:0,124:124:99:3996,325,0 1/1:0,67:67:99:2247,181,0 1/1:0,159:160:99:5265,391,0 1/1:0,81:82:99:2759,211,0 1/1:1,103:104:99:3423,226,0 1/1:0,80:80:99:2771,211,0 1/1:0,52:52:99:1853,153,0 1/1:0,70:70:99:2252,181,0 1/1:0,40:40:99:1308,105,0 1/1:0,70:70:99:2291,187,0 1/1:0,57:57:99:1921,156,0 1/1:0,128:128:99:4152,322,0 1/1:0,76:76:99:2514,199,0 1/1:0,63:63:99:2056,162,0 1/1:0,55:55:99:1855,150,0 1/1:0,72:72:99:2302,181,0 1/1:0,112:113:99:3488,283,0 1/1:0,75:75:99:2470,202,0 1/1:0,55:55:99:1717,135,0 1/1:0,60:60:99:2005,159,0 1/1:0,61:61:99:2091,166,0 0/1:48,31:79:99:937,0,1307 1 897738 . C T 356.28 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.905;DP=1737;Dels=0.00;FS=21.169;HRun=2;HaplotypeScore=1.3986;InbreedingCoeff=-0.0120;MQ=59.18;MQ0=0;MQRankSum=0.345;QD=14.84;ReadPosRankSum=-0.608 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,111,1410 0/0:25,0:25:69.19:0,69,852 0/0:37,0:37:99:0,105,1340 0/0:99,1:100:99:0,239,3586 0/0:69,0:69:99:0,190,2556 0/0:35,0:35:93.29:0,93,1247 0/0:34,0:34:93.31:0,93,1271 0/0:55,0:55:99:0,147,1981 0/0:34,0:34:99:0,99,1239 0/0:40,0:40:99:0,111,1387 0/0:19,0:19:57.18:0,57,728 0/0:29,0:29:84.26:0,84,1048 0/0:36,0:36:90.28:0,90,1153 0/0:24,0:24:72.22:0,72,897 0/0:110,0:110:99:0,292,3719 0/0:25,0:25:66.20:0,66,831 0/0:31,0:31:84.26:0,84,1059 0/0:29,0:30:81.26:0,81,1033 0/0:60,0:60:99:0,153,1976 0/0:68,0:68:99:0,196,2416 0/0:62,0:64:99:0,172,2153 0/0:41,0:41:99:0,123,1512 0/0:86,0:86:99:0,229,3120 0/0:32,0:32:84.28:0,84,1148 0/0:31,0:31:87.29:0,87,1193 0/0:51,0:51:99:0,126,1694 0/0:13,0:13:39.13:0,39,497 0/0:24,0:24:66.21:0,66,825 0/0:31,0:31:87.27:0,87,1097 0/0:26,0:26:72.23:0,72,921 0/0:39,0:39:99:0,108,1370 0/0:59,0:59:99:0,144,1873 0/0:42,0:42:99:0,111,1372 0/0:31,0:31:81.26:0,81,1041 0/0:28,0:28:72.23:0,72,925 0/0:34,0:34:90.24:0,90,1113 0/0:69,0:69:99:0,187,2316 0/0:32,0:32:87.28:0,87,1106 0/0:33,0:33:93.29:0,93,1186 0/0:20,0:20:60.19:0,60,754 0/0:26,0:26:75.24:0,75,950 0/1:11,13:24:99:402,0,309 1 898603 . C G 233.87 . AC=19;AF=0.226;AN=84;BaseQRankSum=-8.551;DP=559;Dels=0.00;FS=170.325;HRun=2;HaplotypeScore=0.7833;InbreedingCoeff=-0.3316;MQ=56.95;MQ0=0;MQRankSum=-1.676;QD=0.91;ReadPosRankSum=-4.698 GT:AD:DP:GQ:PL 0/0:7,1:8:12.02:0,12,130 0/0:6,1:7:14.99:0,15,135 0/0:4,3:7:9.02:0,9,97 0/1:20,9:29:5.05:5,0,495 0/1:19,9:29:12.17:12,0,413 0/0:10,3:13:12.01:0,12,126 0/0:17,3:20:5.43:0,5,335 0/0:12,8:20:2.28:2,0,249 0/1:5,2:7:19.55:20,0,75 0/0:9,0:9:18.01:0,18,181 0/0:10,1:11:2.36:0,2,233 0/0:10,2:12:27.03:0,27,276 0/1:7,2:9:4.66:5,0,136 0/1:7,5:12:4.66:5,0,138 0/0:29,9:38:2.23:0,2,720 0/0:14,8:22:5.87:0,6,245 0/1:6,6:12:12.19:12,0,90 0/0:8,5:13:2.26:2,0,174 0/1:11,4:15:4.60:5,0,198 0/1:13,3:16:13.31:13,0,167 0/0:8,2:10:21.06:0,21,244 0/1:10,3:13:34.03:34,0,208 0/0:14,2:16:10.45:0,10,394 0/1:12,4:16:16.30:16,0,285 0/1:13,2:15:11.57:12,0,162 0/1:6,3:9:15.65:16,0,77 0/1:6,4:10:51.98:52,0,147 0/0:9,1:10:24.07:0,24,283 0/0:8,2:10:18.05:0,18,195 0/1:6,4:10:15.55:16,0,120 0/1:3,3:6:51.07:51,0,60 0/0:14,4:18:33.03:0,33,334 0/1:10,2:12:27.15:27,0,221 0/0:7,1:8:15.04:0,15,174 0/0:6,0:6:15.03:0,15,158 0/1:9,5:14:59.51:60,0,221 0/0:6,2:8:15.03:0,15,157 0/0:11,4:15:2.29:2,0,233 0/0:7,2:9:10.27:0,10,102 0/1:9,5:14:4.69:5,0,151 0/0:9,2:11:18.03:0,18,189 0/1:8,2:10:14.45:14,0,151 1 900427 . G A 1690.43 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.822;DP=2253;Dels=0.00;FS=3.487;HRun=2;HaplotypeScore=1.8023;InbreedingCoeff=-0.0244;MQ=58.13;MQ0=2;MQRankSum=-0.170;QD=11.50;ReadPosRankSum=0.880 GT:AD:DP:GQ:PL 0/0:39,0:40:99:0,114,1406 0/0:47,0:47:99:0,126,1577 0/0:28,0:28:84.25:0,84,1032 0/0:109,0:110:99:0,298,3931 0/0:103,0:103:99:0,283,3713 0/0:77,0:78:99:0,211,2783 0/1:29,28:57:99:895,0,916 0/0:76,0:76:99:0,211,2729 0/0:32,0:32:90.29:0,90,1147 0/0:34,0:34:96.28:0,96,1177 0/0:30,1:31:78.24:0,78,985 0/0:30,0:30:87.27:0,87,1078 0/0:31,0:31:84.25:0,84,1044 0/0:55,0:55:99:0,147,1855 0/0:120,0:120:99:0,301,3779 0/0:42,0:42:99:0,111,1373 0/0:35,0:35:90.28:0,90,1142 0/0:36,0:36:99:0,105,1315 0/0:64,0:64:99:0,160,2021 0/1:60,30:90:99:858,0,1506 0/0:66,0:66:99:0,178,2207 0/0:47,0:47:99:0,120,1502 0/0:122,0:122:99:0,313,4104 0/0:67,0:67:99:0,187,2465 0/0:65,0:65:99:0,169,2252 0/0:54,0:54:99:0,150,1958 0/0:21,0:21:63.18:0,63,766 0/0:35,0:35:99:0,102,1288 0/0:34,0:34:93.28:0,93,1164 0/0:35,0:35:84.26:0,84,1074 0/0:33,0:33:90.28:0,90,1151 0/0:75,0:75:99:0,178,2270 0/0:66,1:67:99:0,175,2226 0/0:42,0:42:99:0,114,1443 0/0:39,0:39:99:0,108,1328 0/0:39,0:39:99:0,102,1274 0/0:71,0:71:99:0,187,2348 0/0:43,0:43:99:0,114,1460 0/0:43,0:43:99:0,120,1502 0/0:44,0:44:99:0,117,1457 0/0:30,0:30:84.23:0,84,1038 0/0:42,0:42:99:0,114,1446 1 900505 . G C 16285.10 . AC=31;AF=0.369;AN=84;BaseQRankSum=2.547;DP=1382;Dels=0.00;FS=1.928;HRun=1;HaplotypeScore=1.3185;InbreedingCoeff=0.2331;MQ=58.41;MQ0=0;MQRankSum=-0.500;QD=20.72;ReadPosRankSum=0.351 GT:AD:DP:GQ:PL 0/1:11,15:26:99:435,0,271 0/0:23,0:23:60.18:0,60,725 0/0:19,0:19:48.13:0,48,564 1/1:0,71:71:99:2475,202,0 1/1:0,59:59:99:2040,162,0 0/0:53,0:53:99:0,144,1773 0/0:51,1:52:99:0,135,1690 0/0:62,0:62:99:0,159,2030 0/1:15,13:28:99:375,0,446 0/1:9,9:18:99:241,0,172 1/1:0,22:22:60.19:754,60,0 0/1:11,10:21:99:260,0,242 0/1:12,9:21:99:269,0,304 0/0:22,0:22:60.17:0,60,718 0/1:32,36:68:99:1092,0,821 0/1:13,16:29:99:451,0,371 1/1:0,19:19:54.16:663,54,0 0/0:25,0:25:69.16:0,69,815 0/1:22,17:39:99:425,0,553 0/1:26,27:53:99:761,0,609 0/0:42,0:42:99:0,114,1377 0/1:14,10:24:99:245,0,349 0/1:28,26:54:99:764,0,750 0/1:22,16:38:99:436,0,720 1/1:0,43:43:99:1511,120,0 0/0:46,0:46:99:0,123,1501 0/0:15,0:15:42.10:0,42,494 0/0:19,0:19:54.12:0,54,617 0/0:24,0:24:63.18:0,63,771 1/1:0,16:16:45.11:543,45,0 0/1:9,9:18:99:245,0,281 0/0:54,0:54:99:0,150,1800 1/1:0,28:28:75.21:905,75,0 0/0:24,0:24:63.16:0,63,741 0/0:18,0:18:48.11:0,48,560 0/0:23,0:23:60.14:0,60,700 0/1:24,20:44:99:539,0,623 1/1:0,19:19:51.16:630,51,0 0/0:24,0:24:60.18:0,60,723 0/0:27,0:28:69.17:0,69,811 0/1:19,9:28:99:225,0,584 0/0:23,0:23:54.13:0,54,639 1 900557 . T C 201.99 . AC=11;AF=0.131;AN=84;BaseQRankSum=-10.910;DP=810;Dels=0.00;FS=132.388;HRun=2;HaplotypeScore=0.5339;InbreedingCoeff=-0.2153;MQ=56.17;MQ0=0;MQRankSum=1.485;QD=1.10;ReadPosRankSum=-9.024 GT:AD:DP:GQ:PL 0/0:17,8:25:45.13:0,45,540 0/0:13,3:16:27.08:0,27,323 0/0:11,3:14:24.07:0,24,284 0/0:22,21:43:7.85:0,8,626 0/1:20,30:50:80.34:80,0,574 0/1:14,9:23:9.30:9,0,342 0/0:21,11:32:9.75:0,10,551 0/0:15,15:30:7.46:0,7,374 0/0:4,3:7:9.03:0,9,108 0/0:16,3:19:13.42:0,13,384 0/0:13,6:19:5.49:0,5,352 0/0:12,5:17:33.10:0,33,408 0/0:9,7:16:2.75:1,0,281 0/0:13,8:21:33.10:0,33,407 0/0:25,11:36:42.20:0,42,757 0/0:11,7:18:24.08:0,24,301 0/0:12,4:16:30.09:0,30,360 0/1:6,3:9:14.19:14,0,191 0/0:12,3:15:36.11:0,36,444 0/0:23,9:32:44.16:0,44,577 0/0:19,3:22:50.37:0,50,604 0/1:8,7:15:5.56:6,0,224 0/0:21,16:37:17.46:0,17,425 0/0:17,10:27:2.67:0,3,349 0/0:16,14:30:36.11:0,36,434 0/0:15,7:22:1.27:5,0,326 0/0:10,4:14:2.33:1,0,291 0/0:4,4:8:12.03:0,12,135 0/0:5,3:8:9.03:0,9,113 0/0:7,5:12:15.05:0,15,184 0/1:4,4:8:17.59:18,0,101 0/0:14,4:18:39.11:0,39,465 0/1:13,6:19:30.93:31,0,295 0/0:10,3:13:1.65:3,0,288 0/1:10,4:14:5.16:5,0,309 0/0:13,1:14:30.09:0,30,363 0/0:11,3:14:27.08:0,27,328 0/1:7,6:13:12.54:13,0,162 0/0:9,3:12:1.86:3,0,247 0/1:6,5:11:36.18:36,0,166 0/1:5,5:10:67.71:68,0,143 0/1:6,5:11:41.19:41,0,131 1 900560 . A C 3861.72 . AC=39;AF=0.464;AN=84;BaseQRankSum=-16.521;DP=853;Dels=0.00;FS=547.218;HRun=2;HaplotypeScore=0.6190;InbreedingCoeff=-0.8458;MQ=56.09;MQ0=0;MQRankSum=2.050;QD=4.85;ReadPosRankSum=-10.453 GT:AD:DP:GQ:PL 0/1:16,9:25:35.11:35,0,442 0/1:9,9:18:47.72:48,0,280 0/1:10,5:15:35.58:36,0,214 0/1:16,27:43:99:285,0,437 0/1:14,32:46:99:518,0,265 0/1:10,15:25:99:165,0,234 0/1:13,19:32:99:119,0,384 0/1:9,19:28:99:126,0,240 0/1:3,4:7:67.69:68,0,87 0/1:12,7:19:42.72:43,0,322 0/1:11,9:20:5.31:5,0,324 0/1:12,9:21:17.81:18,0,339 0/1:7,9:17:99:186,0,207 0/1:13,9:22:99:105,0,377 0/1:20,20:40:99:249,0,546 0/1:8,11:19:89.55:90,0,224 0/1:10,6:16:41.89:42,0,290 0/1:5,5:10:12.54:13,0,159 0/0:13,3:16:13.43:0,13,417 0/1:16,16:32:99:135,0,446 0/0:17,8:25:19.59:0,20,516 0/1:6,10:16:81.44:81,0,192 0/1:12,24:36:99:252,0,264 0/1:7,20:27:81.36:81,0,191 0/1:15,15:30:99:131,0,392 0/1:10,15:25:99:169,0,295 0/1:9,7:16:60.54:61,0,251 0/1:4,4:8:8.67:9,0,114 0/1:3,6:9:48.93:49,0,96 0/1:7,8:15:7.64:8,0,165 0/1:3,5:8:78.44:78,0,91 0/1:12,10:23:75.51:76,0,345 0/1:9,14:23:34.99:35,0,270 0/1:4,4:8:41.13:41,0,117 0/1:9,6:15:96.29:96,0,289 0/0:9,7:16:26.28:0,26,272 0/1:8,9:17:46.27:46,0,192 0/1:7,8:15:77.47:77,0,205 0/1:9,4:13:32.97:33,0,231 0/1:4,9:13:86.04:94,0,86 0/1:4,6:10:37.07:37,0,125 0/1:4,10:14:99:123,0,116 1 906558 . G A 61.72 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.434;DP=277;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.3258;InbreedingCoeff=-0.0579;MQ=58.87;MQ0=0;MQRankSum=2.163;QD=8.82;ReadPosRankSum=-0.630 GT:AD:DP:GQ:PL 0/0:4,0:4:9.03:0,9,108 0/0:2,0:2:6.02:0,6,74 0/0:6,0:6:15.03:0,15,176 0/0:18,0:18:48.15:0,48,607 0/0:16,0:16:39.13:0,39,513 0/0:16,0:16:42.12:0,42,524 0/0:4,0:4:9.03:0,9,117 0/0:7,0:7:21.07:0,21,270 0/0:2,0:2:6.01:0,6,64 0/0:4,0:4:12.04:0,12,146 0/0:2,0:2:6.02:0,6,76 0/0:5,0:5:15.04:0,15,175 0/0:2,0:2:6.02:0,6,70 0/0:5,0:5:15.04:0,15,170 0/0:22,0:22:60.17:0,60,716 0/0:8,0:8:18.03:0,18,200 0/0:6,0:6:15.04:0,15,180 0/0:2,0:2:6.01:0,6,61 0/0:4,0:4:12.03:0,12,132 0/0:13,0:13:30.08:0,30,348 0/0:6,0:6:18.06:0,18,221 0/0:11,0:11:24.05:0,24,273 0/0:12,0:12:33.08:0,33,415 0/0:6,0:6:15.05:0,15,197 0/0:9,0:9:27.09:0,27,356 0/0:8,0:8:21.07:0,21,279 0/0:3,0:3:9.01:0,9,100 0/0:3,0:3:9.03:0,9,112 0/0:2,0:2:6.02:0,6,71 0/0:6,0:6:18.05:0,18,212 0/0:4,0:4:12.03:0,12,135 0/0:13,0:13:30.05:0,30,332 0/0:6,0:6:18.01:0,18,191 0/0:5,0:5:15.05:0,15,183 0/0:3,0:3:6.01:0,6,60 0/0:4,0:4:12.03:0,12,141 0/0:6,0:6:18.05:0,18,200 0/0:2,0:2:6.01:0,6,63 0/0:8,0:8:18.05:0,18,233 0/1:1,2:3:28.77:63,0,29 0/0:5,0:5:12.04:0,12,152 0/1:2,2:4:46.79:60,0,47 1 908323 . G C 53.79 . AC=6;AF=0.073;AN=82;BaseQRankSum=-0.463;DP=191;Dels=0.01;FS=140.972;HRun=3;HaplotypeScore=0.3856;InbreedingCoeff=-0.1660;MQ=58.44;MQ0=0;MQRankSum=1.592;QD=1.28;ReadPosRankSum=-5.100 GT:AD:DP:GQ:PL 0/0:3,0:3:9.02:0,9,94 0/0:4,1:5:12.03:0,12,130 0/0:3,0:3:9.02:0,9,93 0/0:5,1:6:8.05:0,8,129 0/1:6,1:7:8.63:9,0,158 0/0:4,0:4:9.03:0,9,107 0/0:3,1:4:9.01:0,9,89 0/0:1,0:1:3.01:0,3,33 0/0:5,1:6:15.04:0,15,162 0/0:4,0:4:9.02:0,9,97 0/0:5,0:5:12.03:0,12,130 0/0:1,0:1:3.01:0,3,31 0/0:3,0:3:9.02:0,9,96 0/0:2,0:2:6.01:0,6,63 0/1:7,4:12:39.74:40,0,141 0/1:7,1:8:10.29:10,0,200 0/0:1,0:1:3.01:0,3,32 0/0:4,1:5:4.26:0,4,66 0/0:7,1:8:21.05:0,21,227 0/0:9,3:12:1.38:0,1,230 0/1:4,1:5:19.32:19,0,105 0/0:10,2:12:2.42:1,0,285 0/0:3,0:3:9.01:0,9,89 0/0:2,0:2:6.02:0,6,68 0/0:4,1:5:9.90:0,10,95 0/0:2,0:2:6.02:0,6,67 0/0:4,1:5:3.36:0,3,87 0/0:2,1:3:6.02:0,6,65 0/0:4,1:5:12.02:0,12,124 0/1:1,1:2:17.68:18,0,26 0/0:3,0:3:6.01:0,6,61 0/0:4,1:5:12.02:0,12,121 0/0:3,0:3:9.02:0,9,92 0/0:2,0:2:6.01:0,6,63 0/1:6,2:8:51.39:51,0,166 ./. 0/0:6,0:6:12.03:0,12,124 0/0:5,0:5:12.01:0,12,126 0/0:4,0:4:12.03:0,12,127 0/0:2,0:2:6.02:0,6,64 0/0:4,1:5:12.03:0,12,124 0/0:1,0:1:3.01:0,3,32 1 908325 . A C 159.50 . AC=13;AF=0.155;AN=84;BaseQRankSum=-2.025;DP=205;Dels=0.02;FS=245.175;HRun=2;HaplotypeScore=0.4231;InbreedingCoeff=-0.2488;MQ=58.69;MQ0=0;MQRankSum=0.784;QD=1.73;ReadPosRankSum=-5.034 GT:AD:DP:GQ:PL 0/0:4,0:4:12.03:0,12,136 0/1:4,1:5:8.65:9,0,128 0/0:3,0:3:9.03:0,9,108 0/0:6,2:8:14.63:0,15,156 0/1:6,1:7:21.26:21,0,159 0/0:3,1:4:9.02:0,9,100 0/0:3,1:4:6.02:0,6,70 0/0:2,0:2:3.01:0,3,37 0/1:6,1:7:15.07:15,0,196 0/0:4,0:4:9.03:0,9,113 0/0:4,0:4:9.03:0,9,114 0/0:1,0:1:3.01:0,3,38 0/0:3,0:3:9.03:0,9,112 0/0:2,0:2:6.02:0,6,73 0/1:9,4:13:41.33:41,0,173 0/1:8,1:9:3.51:4,0,258 0/0:1,0:1:3.01:0,3,37 0/0:4,1:5:7.27:0,7,96 0/0:7,1:8:18.06:0,18,221 0/1:8,4:12:43.42:43,0,224 0/1:3,1:4:29.19:29,0,98 0/1:9,3:12:34.59:35,0,264 0/0:4,0:4:12.04:0,12,147 0/0:2,0:2:6.02:0,6,74 0/0:4,1:5:8.50:0,8,102 0/0:2,0:2:6.02:0,6,69 0/0:4,1:5:10.28:0,10,114 0/0:2,1:3:6.02:0,6,76 0/1:4,1:5:17.45:17,0,132 0/1:2,1:3:22.53:23,0,61 0/1:2,2:4:16.66:17,0,65 0/1:5,1:6:17.20:17,0,160 0/0:4,0:4:12.04:0,12,143 0/0:3,0:3:9.03:0,9,108 0/0:6,0:6:18.06:0,18,218 0/0:1,0:1:3.01:0,3,33 0/0:6,0:6:12.01:0,12,122 0/0:6,0:6:18.05:0,18,205 0/1:4,1:5:23.53:24,0,132 0/0:2,0:2:6.02:0,6,71 0/0:4,1:5:12.04:0,12,142 0/0:1,0:1:3.01:0,3,36 1 908389 . C T 77.26 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.589;DP=470;Dels=0.00;FS=8.783;HRun=0;HaplotypeScore=0.3399;InbreedingCoeff=-0.0207;MQ=58.78;MQ0=0;MQRankSum=1.460;QD=7.02;ReadPosRankSum=-0.047 GT:AD:DP:GQ:PL 0/0:13,0:13:39.12:0,39,487 0/0:7,0:7:15.05:0,15,187 0/0:6,0:6:15.05:0,15,196 0/0:12,0:12:30.09:0,30,386 0/0:11,0:11:27.09:0,27,355 0/0:7,0:7:15.04:0,15,186 0/0:9,0:9:24.06:0,24,298 0/0:6,0:6:15.03:0,15,168 0/0:11,0:11:33.09:0,33,382 0/0:13,0:13:36.09:0,36,412 0/0:8,0:8:21.05:0,21,228 0/0:12,0:12:30.09:0,30,381 0/0:6,0:6:18.04:0,18,205 0/0:13,0:14:36.10:0,36,416 0/0:45,0:45:99:0,111,1381 0/0:10,0:10:27.07:0,27,319 0/0:6,0:6:15.04:0,15,175 0/0:13,0:13:36.11:0,36,447 0/0:15,0:15:36.09:0,36,420 0/0:32,0:32:78.24:0,78,987 0/0:12,0:12:33.10:0,33,403 0/0:16,0:16:39.12:0,39,469 0/0:10,0:10:27.09:0,27,352 0/0:5,0:5:9.02:0,9,109 0/0:6,0:6:18.05:0,18,212 0/0:8,0:8:21.06:0,21,265 0/0:7,0:7:18.05:0,18,213 0/0:7,0:7:15.05:0,15,187 0/0:6,0:6:18.04:0,18,194 0/0:4,0:4:12.04:0,12,148 0/0:3,0:3:9.03:0,9,106 0/0:18,0:18:48.13:0,48,590 0/0:4,0:4:9.03:0,9,113 0/0:14,0:14:36.10:0,36,437 0/0:12,0:12:30.07:0,30,346 0/1:7,4:11:99:123,0,194 0/0:18,0:18:42.11:0,42,477 0/0:14,0:14:36.09:0,36,428 0/0:9,0:9:24.05:0,24,257 0/0:12,0:12:30.08:0,30,354 0/0:13,0:13:33.10:0,33,405 0/0:5,0:5:15.04:0,15,180 1 934990 . A G 16.21 . AC=5;AF=0.060;AN=84;BaseQRankSum=-9.322;DP=611;Dels=0.03;FS=74.306;HRun=3;HaplotypeScore=3.1208;InbreedingCoeff=-0.1091;MQ=57.08;MQ0=0;MQRankSum=0.996;QD=0.23;ReadPosRankSum=-3.542 GT:AD:DP:GQ:PL 0/0:7,4:11:21.06:0,21,257 0/1:5,7:12:11.58:12,0,151 0/0:6,5:11:18.06:0,18,220 0/0:13,8:21:0.31:11,0,395 0/0:8,11:19:21.06:0,21,250 0/0:9,4:13:24.07:0,24,288 0/0:7,2:9:21.06:0,21,254 0/0:12,8:20:30.09:0,30,365 0/0:6,8:14:15.05:0,15,189 0/1:7,2:9:15.38:15,0,174 0/0:4,4:8:6.02:0,6,72 0/0:8,5:13:24.05:0,24,266 0/0:8,4:12:24.08:0,24,298 0/0:2,7:9:6.02:0,6,76 0/0:24,3:27:69.20:0,69,830 0/0:10,4:14:30.09:0,30,372 0/0:11,10:21:8.77:0,9,318 0/0:8,4:12:18.05:0,18,202 0/0:12,6:18:36.10:0,36,428 0/1:11,11:22:37.91:38,0,219 0/0:10,8:18:27.08:0,27,337 0/1:10,8:18:17.28:17,0,298 0/0:14,11:25:35.70:0,36,425 0/0:8,5:13:21.06:0,21,241 0/0:12,7:19:9.20:0,9,333 0/0:14,7:21:4.55:0,5,367 0/0:7,4:11:18.03:0,18,208 0/0:2,2:4:6.01:0,6,64 0/0:2,2:4:6.02:0,6,74 0/0:5,4:9:15.05:0,15,190 0/1:3,5:8:19.62:20,0,62 0/0:8,10:18:24.07:0,24,291 0/0:10,9:19:24.07:0,24,289 0/0:3,1:4:9.02:0,9,104 0/0:6,4:11:18.05:0,18,214 0/0:12,9:21:14.42:0,14,393 0/0:13,3:16:30.09:0,30,355 0/0:5,6:11:15.05:0,15,184 0/0:5,7:12:12.04:0,12,148 0/0:7,4:11:18.04:0,18,209 0/0:7,4:11:1.29:5,0,204 0/0:12,2:14:36.11:0,36,436 1 977028 . G T 313.43 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.603;DP=1075;Dels=0.00;FS=9.278;HRun=0;HaplotypeScore=0.8016;InbreedingCoeff=-0.0248;MQ=57.46;MQ0=0;MQRankSum=2.431;QD=8.04;ReadPosRankSum=1.167 GT:AD:DP:GQ:PL 0/0:15,0:15:42.09:0,42,501 0/0:22,0:22:60.14:0,60,711 0/0:10,0:10:27.08:0,27,321 0/0:67,0:67:99:0,168,2093 0/0:70,0:70:99:0,162,2020 0/0:59,0:60:99:0,135,1719 0/0:40,0:40:99:0,102,1296 0/0:29,0:29:84.24:0,84,993 0/0:15,0:15:42.12:0,42,502 0/0:12,0:12:27.09:0,27,361 0/0:15,0:15:42.13:0,42,527 0/0:17,0:17:48.15:0,48,583 0/0:9,0:9:18.03:0,18,209 0/0:16,0:16:36.09:0,36,437 0/0:51,0:51:99:0,117,1394 0/0:25,0:25:60.18:0,60,715 0/0:21,0:21:63.17:0,63,760 0/0:15,0:15:36.10:0,36,435 0/0:28,1:29:69.19:0,69,827 0/0:23,0:23:54.17:0,54,695 0/1:12,9:21:99:251,0,249 0/0:16,0:16:39.11:0,39,484 0/0:93,0:93:99:0,208,2681 0/0:44,0:44:99:0,99,1270 0/0:39,0:40:96.26:0,96,1251 0/0:34,1:35:58.55:0,59,1007 0/0:8,0:8:21.06:0,21,235 0/0:15,0:15:33.10:0,33,417 0/0:12,0:12:27.08:0,27,323 0/0:18,0:18:42.13:0,42,526 0/0:24,0:24:63.16:0,63,768 0/1:11,6:18:99:125,0,252 0/0:18,0:18:39.12:0,39,488 0/0:11,0:11:30.10:0,30,385 0/0:18,0:18:51.15:0,51,623 0/0:22,0:22:51.11:0,51,598 0/0:21,0:22:48.10:0,48,578 0/0:13,0:14:30.09:0,30,369 0/0:21,0:21:57.18:0,57,724 0/0:19,0:19:51.16:0,51,637 0/0:11,0:11:30.09:0,30,375 0/0:14,0:14:36.09:0,36,438 1 978718 . C G 8.19 . AC=4;AF=0.049;AN=82;BaseQRankSum=-2.390;DP=471;Dels=0.00;FS=58.679;HRun=1;HaplotypeScore=0.3548;InbreedingCoeff=-0.0929;MQ=58.07;MQ0=0;MQRankSum=0.836;QD=0.16;ReadPosRankSum=-4.208 GT:AD:DP:GQ:PL 0/0:6,5:11:15.04:0,15,170 0/0:4,0:4:9.03:0,9,107 0/0:2,0:2:6.02:0,6,69 0/0:19,6:25:47.18:0,47,565 0/0:15,10:25:41.85:0,42,490 0/0:7,9:16:18.06:0,18,234 0/0:8,5:13:24.07:0,24,294 0/0:10,0:10:27.09:0,27,344 0/0:9,3:12:21.05:0,21,232 0/0:8,2:10:24.07:0,24,286 0/1:5,11:16:19.33:19,0,105 0/0:3,3:6:6.02:0,6,76 0/0:2,0:2:6.02:0,6,69 0/0:12,2:14:33.06:0,33,363 0/0:16,6:22:39.12:0,39,464 0/1:10,5:15:33.63:34,0,296 ./. 0/0:6,3:10:15.02:0,15,154 0/0:9,6:15:18.03:0,18,192 0/0:14,1:15:36.10:0,36,432 0/1:6,5:11:19.31:19,0,142 0/0:9,8:17:2.71:1,0,218 0/0:14,11:25:36.09:0,36,436 0/0:1,1:2:3.01:0,3,37 0/0:8,5:13:18.04:0,18,199 0/0:3,2:5:9.02:0,9,103 0/0:3,0:3:9.02:0,9,97 0/0:4,6:10:9.02:0,9,95 0/0:5,2:7:15.04:0,15,178 0/0:8,3:11:18.04:0,18,200 0/0:9,2:11:27.08:0,27,321 0/0:4,3:7:12.03:0,12,140 0/0:10,5:15:27.08:0,27,332 0/1:7,3:10:17.46:17,0,123 0/0:8,2:10:21.04:0,21,226 0/0:11,3:14:0.60:0,1,321 0/0:8,1:9:24.07:0,24,275 0/0:7,3:10:18.05:0,18,208 0/0:4,0:4:9.03:0,9,109 0/0:5,2:7:6.02:0,6,71 0/0:7,2:9:12.03:0,12,132 0/0:10,3:13:24.07:0,24,283 1 978762 . G A 49.14 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.646;DP=553;Dels=0.00;FS=2.563;HRun=0;HaplotypeScore=0.6648;InbreedingCoeff=-0.0172;MQ=58.61;MQ0=0;MQRankSum=-0.549;QD=8.19;ReadPosRankSum=0.597 GT:AD:DP:GQ:PL 0/0:12,0:12:36.10:0,36,414 0/0:14,0:14:39.10:0,39,458 0/0:7,0:7:18.04:0,18,200 0/0:34,0:34:99:0,102,1168 0/0:30,0:30:87.27:0,87,1084 0/0:19,0:19:57.18:0,57,738 0/0:13,0:13:30.09:0,30,379 0/0:13,0:13:30.09:0,30,389 0/0:13,0:13:39.12:0,39,481 0/0:8,0:8:21.06:0,21,248 0/0:12,0:12:36.10:0,36,431 0/0:6,0:6:15.02:0,15,158 0/0:2,0:2:6.02:0,6,70 0/0:12,0:12:36.08:0,36,420 0/0:22,0:22:51.14:0,51,590 0/0:21,0:21:63.16:0,63,726 0/0:5,0:5:12.03:0,12,147 0/0:11,0:11:33.10:0,33,388 0/0:16,0:16:48.15:0,48,594 0/0:19,0:20:45.12:0,45,546 0/0:18,0:18:45.12:0,45,529 0/0:18,0:18:54.14:0,54,641 0/0:27,0:27:75.23:0,75,938 0/0:9,0:9:27.08:0,27,338 0/0:12,0:12:30.09:0,30,377 0/0:7,0:7:21.07:0,21,274 0/0:9,0:9:24.07:0,24,290 0/1:3,3:6:84.69:95,0,85 0/0:8,0:8:24.05:0,24,280 0/0:10,0:10:30.09:0,30,369 0/0:12,0:12:36.09:0,36,412 0/0:10,0:10:21.06:0,21,250 0/0:15,0:15:42.12:0,42,498 0/0:13,0:13:39.10:0,39,462 0/0:13,0:13:36.07:0,36,391 0/0:10,0:10:27.08:0,27,323 0/0:12,0:12:33.09:0,33,374 0/0:16,0:16:45.14:0,45,552 0/0:11,0:11:30.08:0,30,349 0/0:6,0:6:12.04:0,12,154 0/0:6,0:6:18.05:0,18,213 0/0:15,0:15:36.07:0,36,423 1 979295 . G A 35.75 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.848;DP=705;Dels=0.00;FS=1.718;HRun=0;HaplotypeScore=0.7228;InbreedingCoeff=-0.0135;MQ=58.56;MQ0=0;MQRankSum=1.562;QD=5.11;ReadPosRankSum=-1.147 GT:AD:DP:GQ:PL 0/0:11,0:11:24.07:0,24,274 0/0:11,0:11:30.08:0,30,340 0/0:13,0:13:39.11:0,39,460 0/0:30,0:30:75.24:0,75,963 0/0:39,1:40:77.63:0,78,1262 0/0:19,0:19:45.12:0,45,559 0/0:20,0:20:57.18:0,57,729 0/0:19,0:19:51.15:0,51,630 0/0:15,0:15:36.11:0,36,450 0/1:4,3:7:81.94:82,0,118 0/0:9,0:9:24.06:0,24,279 0/0:14,0:14:39.08:0,39,430 0/0:14,0:14:39.11:0,39,455 0/0:9,0:9:24.07:0,24,268 0/0:38,0:40:99:0,99,1151 0/0:26,0:26:75.19:0,75,864 0/0:11,0:11:33.09:0,33,376 0/0:8,0:8:21.06:0,21,251 0/0:12,0:12:30.08:0,30,354 0/0:21,0:21:54.14:0,54,638 0/0:26,0:26:75.19:0,75,851 0/0:19,0:19:51.11:0,51,567 0/0:41,1:42:82.12:0,82,1451 0/0:17,0:17:48.14:0,48,610 0/0:23,0:23:69.20:0,69,857 0/0:12,0:12:36.11:0,36,457 0/0:11,0:11:33.07:0,33,368 0/0:13,0:13:39.09:0,39,442 0/0:13,0:13:39.12:0,39,467 0/0:12,0:12:33.09:0,33,373 0/0:8,0:8:24.06:0,24,265 0/0:19,0:19:51.12:0,51,560 0/0:16,0:16:39.11:0,39,455 0/0:11,0:11:33.09:0,33,371 0/0:13,0:13:30.07:0,30,350 0/0:10,0:10:27.08:0,27,308 0/0:21,0:22:51.14:0,51,589 0/0:11,0:11:33.09:0,33,382 0/0:21,0:21:54.14:0,54,619 0/0:14,0:14:42.10:0,42,468 0/0:12,1:13:10.41:0,10,365 0/0:10,0:10:30.07:0,30,332 1 980775 . GCACCTGT G 111.57 . AC=11;AF=0.131;AN=84;BaseQRankSum=-1.095;DP=733;FS=76.934;HRun=0;HaplotypeScore=104.8232;InbreedingCoeff=-0.0879;MQ=57.30;MQ0=0;MQRankSum=0.840;QD=0.82;ReadPosRankSum=-4.799 GT:AD:DP:GQ:PL 0/0:14,0:14:21.05:0,21,613 0/0:12,0:12:26.11:0,26,733 0/1:20,0:20:20.09:20,0,372 0/0:46,0:46:19.12:0,19,1309 0/0:28,0:28:2.20:2,0,888 0/0:29,0:29:27.08:0,27,929 0/0:20,0:20:0.10:0,0,739 0/0:33,0:33:31.08:0,31,1206 0/1:7,5:12:2.09:44,2,0 0/1:9,0:9:6.90:7,0,608 0/0:8,0:8:15.04:0,15,385 0/0:8,0:8:15.05:0,15,605 0/0:4,0:4:9.03:0,9,363 0/1:15,0:15:9.86:10,0,582 0/0:44,0:44:30.16:0,30,1579 0/0:21,0:21:12.14:0,12,1060 0/0:14,0:14:17.13:0,17,267 0/1:11,0:11:6.36:6,0,371 0/0:13,0:13:15.04:0,15,503 0/0:29,0:29:46.35:0,46,1453 0/0:20,0:20:30.09:0,30,1049 0/0:14,0:14:15.05:0,15,539 0/0:40,0:40:45.13:0,45,1472 0/0:16,0:16:15.04:0,15,510 0/0:22,0:22:30.09:0,30,1020 0/0:22,0:22:26.91:0,27,803 0/1:12,0:12:11.80:12,0,580 0/0:9,0:9:15.04:0,15,438 0/1:8,0:8:37.81:38,0,329 0/0:12,0:12:8.94:0,9,175 0/0:11,0:11:9.03:0,9,377 0/0:26,0:26:29.29:0,29,931 0/0:24,0:24:30.09:0,30,957 0/0:8,0:8:0.98:6,0,377 0/0:11,0:11:12.03:0,12,319 0/1:7,9:16:35.89:36,0,346 0/0:21,0:21:27.09:0,27,1101 0/1:11,0:11:34.84:35,0,346 0/0:9,0:9:12.04:0,12,465 0/0:9,0:9:15.05:0,15,542 0/1:8,0:8:23.71:24,0,234 0/1:14,0:14:15.88:16,0,339 1 980776 . C G 79.37 . AC=11;AF=0.134;AN=82;BaseQRankSum=-4.912;DP=732;Dels=0.02;FS=57.137;HRun=2;HaplotypeScore=2.3315;InbreedingCoeff=-0.1766;MQ=57.32;MQ0=0;MQRankSum=-0.158;QD=0.55;ReadPosRankSum=-4.194 GT:AD:DP:GQ:PL 0/0:12,2:14:21.06:0,21,252 0/0:9,3:12:21.07:0,21,263 0/1:11,9:20:16.61:17,0,99 0/0:25,21:46:14.41:0,14,429 0/1:15,13:28:6.37:6,0,271 0/0:15,13:29:27.08:0,27,341 0/0:8,12:20:1.30:5,0,213 0/0:20,13:33:36.09:0,36,422 ./. 0/1:7,2:9:11.45:11,0,189 0/0:7,1:8:15.02:0,15,169 0/0:5,3:8:15.03:0,15,170 0/0:3,1:4:9.03:0,9,107 0/1:9,6:15:17.45:17,0,139 0/0:25,19:44:31.51:0,32,659 0/0:14,7:21:7.46:0,7,372 0/0:8,6:14:18.06:0,18,218 0/1:6,5:11:13.66:14,0,94 0/0:7,6:13:15.04:0,15,171 0/0:22,7:29:39.10:0,39,453 0/0:13,7:20:30.08:0,30,350 0/0:10,4:14:15.03:0,15,153 0/0:23,17:40:42.12:0,42,519 0/0:6,8:15:12.04:0,12,151 0/0:14,8:22:27.09:0,27,346 0/0:16,6:22:21.04:0,21,252 0/1:8,4:12:16.31:16,0,150 0/0:6,3:9:12.04:0,12,152 0/1:6,2:8:22.32:22,0,95 0/0:7,5:12:9.02:0,9,106 0/0:8,3:11:9.03:0,9,110 0/0:19,7:26:27.07:0,27,306 0/0:15,9:24:27.05:0,27,308 0/1:4,4:8:10.66:11,0,118 0/0:5,6:11:12.04:0,12,152 0/0:6,1:7:12.03:0,12,138 0/0:14,7:21:27.08:0,27,319 0/1:5,6:11:44.14:44,0,90 0/0:7,2:9:12.04:0,12,151 0/0:5,4:9:15.04:0,15,181 0/1:2,6:8:27.95:28,0,60 0/1:4,10:14:20.46:20,0,94 1 980784 . A C 58.07 . AC=7;AF=0.083;AN=84;BaseQRankSum=-6.726;DP=578;Dels=0.00;FS=64.305;HRun=3;HaplotypeScore=2.0932;InbreedingCoeff=-0.1404;MQ=56.87;MQ0=0;MQRankSum=0.094;QD=0.55;ReadPosRankSum=-1.895 GT:AD:DP:GQ:PL 0/1:4,3:7:11.64:12,0,123 0/0:4,3:7:12.03:0,12,135 0/1:6,6:13:13.61:14,0,119 0/0:18,17:35:42.12:0,42,489 0/0:14,10:24:21.07:0,21,258 0/0:18,6:24:1.54:0,2,317 0/0:8,7:16:15.05:0,15,181 0/0:21,5:26:42.12:0,42,488 0/1:5,10:17:23.61:24,0,31 0/0:5,4:9:15.05:0,15,177 0/0:3,1:5:6.02:0,6,72 0/0:7,4:11:2.70:1,0,179 0/0:4,3:7:12.03:0,12,141 0/0:9,4:14:24.07:0,24,285 0/0:15,7:22:39.11:0,39,457 0/1:12,5:17:59.16:59,0,315 0/0:4,2:6:9.03:0,9,108 0/1:7,5:13:15.38:15,0,155 0/0:9,2:11:18.05:0,18,206 0/0:20,6:26:42.08:0,42,459 0/0:9,6:15:0.39:0,0,248 0/0:9,6:15:24.06:0,24,274 0/1:18,13:31:18.80:19,0,397 0/0:9,5:14:24.07:0,24,289 0/0:13,5:19:27.08:0,27,319 0/0:15,6:22:30.05:0,30,319 0/0:6,3:9:15.04:0,15,176 0/0:5,5:10:12.04:0,12,144 0/0:4,3:7:12:0,12,111 0/0:2,1:3:3:0,3,25 0/0:4,5:9:9.03:0,9,107 0/0:13,7:20:21.06:0,21,248 0/0:10,5:15:24.05:0,24,264 0/0:3,3:6:9.03:0,9,105 0/0:2,2:4:3.01:0,3,38 0/0:6,2:13:12.01:0,12,117 0/0:17,2:20:39.12:0,39,472 0/0:5,5:10:6.02:0,6,70 0/0:4,2:6:12.04:0,12,144 0/0:7,2:9:18.06:0,18,218 0/0:2,2:4:5.99:0,6,59 0/1:3,4:7:21.57:22,0,66 1 986885 . T G 364.01 . AC=20;AF=0.256;AN=78;BaseQRankSum=-7.854;DP=232;Dels=0.00;FS=126.530;HRun=2;HaplotypeScore=0.2501;InbreedingCoeff=-0.1567;MQ=57.41;MQ0=0;MQRankSum=0.091;QD=3.60;ReadPosRankSum=-4.788 GT:AD:DP:GQ:PL 0/0:2,1:3:6.01:0,6,67 0/1:2,4:6:22.52:23,0,63 1/1:0,2:2:3.01:33,3,0 0/0:9,4:13:27.07:0,27,311 0/1:4,3:7:65.68:66,0,130 0/0:3,2:5:9.03:0,9,116 0/0:2,0:2:6:0,6,56 0/0:6,2:9:12.04:0,12,152 0/1:2,4:6:29.23:29,0,31 0/0:2,1:3:6.01:0,6,67 1/1:0,2:2:3.01:35,3,0 0/1:2,4:6:50.05:50,0,61 ./. 0/0:5,4:9:15.04:0,15,174 0/0:7,3:10:18.50:0,18,194 0/0:3,4:7:6.02:0,6,75 ./. 0/0:2,3:5:6.02:0,6,73 0/0:4,1:5:12.03:0,12,140 0/1:6,4:11:12.56:13,0,148 0/1:3,3:6:11.11:11,0,66 0/1:4,2:6:45.61:46,0,120 0/0:7,6:13:21.05:0,21,237 0/0:2,3:5:6.01:0,6,64 0/1:5,4:9:31.31:31,0,156 0/1:4,2:7:20.21:20,0,131 0/0:1,1:2:3.01:0,3,35 0/0:3,1:4:9.03:0,9,105 ./. 0/1:3,2:5:26.54:27,0,101 0/1:3,5:8:41.90:42,0,87 0/0:5,1:6:15.04:0,15,174 0/0:5,3:8:15.04:0,15,162 0/0:1,2:3:3.01:0,3,38 0/0:4,1:5:12.04:0,12,148 0/1:2,2:4:20.60:21,0,60 0/1:3,4:7:15.65:16,0,86 0/0:4,3:7:12.04:0,12,142 0/1:0,1:1:1.76:31,3,0 0/1:3,1:4:14.65:15,0,97 0/1:2,2:4:12.66:13,0,64 0/0:2,2:4:2.48:0,2,33 1 1021346 . A G 5901.51 . AC=11;AF=0.131;AN=84;BaseQRankSum=16.845;DP=1548;Dels=0.00;FS=6.724;HRun=0;HaplotypeScore=1.1205;InbreedingCoeff=0.0585;MQ=58.96;MQ0=0;MQRankSum=-1.750;QD=15.29;ReadPosRankSum=0.730 GT:AD:DP:GQ:PL 0/0:23,0:23:60.18:0,60,726 0/0:27,0:27:69.21:0,69,862 0/0:29,0:29:75.22:0,75,902 0/0:86,0:86:99:0,217,2639 0/0:60,0:60:99:0,168,1988 0/0:51,0:51:99:0,129,1637 0/0:33,0:33:72.22:0,72,933 0/0:37,1:38:59.66:0,60,1157 0/0:27,0:27:66.19:0,66,804 0/0:15,0:15:36.10:0,36,426 0/0:20,0:20:57.16:0,57,659 0/0:21,0:21:51.15:0,51,630 0/0:23,0:23:66.18:0,66,775 0/0:29,0:29:84.25:0,84,1008 0/0:79,0:79:99:0,208,2524 0/0:19,0:19:57.16:0,57,652 0/0:23,0:23:66.19:0,66,779 0/0:20,0:20:60.16:0,60,690 0/0:46,0:46:99:0,117,1447 0/0:57,0:57:99:0,156,1894 0/0:48,0:48:99:0,129,1582 0/0:42,0:42:99:0,105,1280 0/1:36,45:83:99:1360,0,912 0/0:34,0:34:84.21:0,84,1015 0/1:29,34:63:99:962,0,772 0/0:39,0:39:96.28:0,96,1199 0/0:29,0:29:81.24:0,81,960 0/0:34,0:34:90.26:0,90,1080 0/1:10,11:21:99:251,0,293 1/1:0,25:25:66.21:840,66,0 0/1:14,8:22:99:241,0,428 0/0:57,0:57:99:0,153,1900 0/1:25,18:43:99:464,0,722 0/0:27,0:27:75.23:0,75,917 0/0:33,0:33:87.27:0,87,1074 0/0:34,0:34:90.28:0,90,1118 0/1:38,29:67:99:837,0,1006 0/1:14,12:27:99:369,0,395 0/0:20,0:20:54.16:0,54,646 0/0:39,0:39:99:0,99,1215 0/1:9,10:19:99:317,0,246 0/1:7,8:15:99:260,0,199 1 1118275 . C T 210.38 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.622;DP=363;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3654;InbreedingCoeff=-0.0379;MQ=58.26;MQ0=0;MQRankSum=-0.781;QD=12.38;ReadPosRankSum=-1.004 GT:AD:DP:GQ:PL 0/0:4,0:4:12.04:0,12,153 0/0:9,0:9:24.08:0,24,307 0/0:4,0:4:9.03:0,9,123 0/0:20,0:20:51.17:0,51,687 0/0:7,0:7:21.07:0,21,278 0/0:7,0:7:21.07:0,21,275 0/0:4,0:4:12.04:0,12,152 0/0:5,0:5:15.05:0,15,205 0/0:10,0:10:27.08:0,27,337 0/0:5,0:5:15.05:0,15,194 0/0:5,0:5:15.05:0,15,193 0/0:5,0:5:12.04:0,12,161 0/0:3,0:3:9.02:0,9,103 0/0:10,0:10:27.09:0,27,339 0/0:31,0:31:81.26:0,81,1053 0/0:11,0:11:30.09:0,30,367 0/0:3,0:3:6.02:0,6,76 0/0:6,0:6:15.05:0,15,199 0/0:9,0:9:24.07:0,24,292 0/0:15,0:15:39.13:0,39,512 0/0:16,0:16:39.12:0,39,503 0/0:15,1:16:39.12:0,39,497 0/0:9,0:9:27.08:0,27,345 0/0:5,0:5:12.04:0,12,147 0/0:14,0:14:39.10:0,39,497 0/0:5,0:5:15.04:0,15,190 0/0:6,0:6:18.03:0,18,206 0/0:6,0:6:15.05:0,15,198 0/0:11,0:11:24.07:0,24,298 0/0:5,0:5:15.03:0,15,165 0/0:6,0:6:18.06:0,18,222 0/0:13,0:13:36.11:0,36,461 0/0:13,0:13:30.09:0,30,381 0/1:4,2:6:55.05:55,0,133 0/1:4,7:11:91.78:217,0,92 0/0:4,0:4:12.04:0,12,153 0/0:8,0:8:21.07:0,21,265 0/0:5,0:5:15.05:0,15,190 0/0:8,0:8:21.07:0,21,271 0/0:7,0:7:18.06:0,18,234 0/0:9,0:9:24.07:0,24,299 0/0:7,0:7:21.07:0,21,266 1 1139862 . T C 435.95 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.293;DP=1518;Dels=0.00;FS=6.781;HRun=0;HaplotypeScore=1.6647;InbreedingCoeff=-0.0244;MQ=58.89;MQ0=0;MQRankSum=0.246;QD=10.14;ReadPosRankSum=-0.019 GT:AD:DP:GQ:PL 0/1:11,8:19:99:241,0,281 0/1:14,10:24:99:257,0,394 0/0:28,0:28:81.21:0,81,950 0/0:69,0:69:99:0,181,2232 0/0:56,0:56:99:0,153,1945 0/0:35,0:37:99:0,102,1293 0/0:24,0:24:60.19:0,60,777 0/0:37,0:37:93.29:0,93,1193 0/0:31,0:31:84.24:0,84,1012 0/0:22,0:22:57.18:0,57,716 0/0:27,0:27:78.24:0,78,955 0/0:31,0:32:78.23:0,78,959 0/0:25,0:25:66.17:0,66,796 0/0:27,0:27:78.23:0,78,940 0/0:107,0:107:99:0,256,3145 0/0:41,0:42:99:0,102,1226 0/0:44,0:44:99:0,111,1356 0/0:27,0:27:72.22:0,72,880 0/0:56,0:57:99:0,141,1726 0/0:53,0:53:99:0,150,1806 0/0:45,0:45:99:0,126,1528 0/0:31,0:31:78.23:0,78,962 0/0:65,0:65:99:0,175,2188 0/0:29,0:29:87.25:0,87,1059 0/0:20,0:20:48.15:0,48,631 0/0:31,0:31:75.22:0,75,949 0/0:20,0:20:54.14:0,54,631 0/0:25,0:25:72.18:0,72,844 0/0:21,0:21:54.17:0,54,682 0/0:36,0:36:93.28:0,93,1148 0/0:35,0:35:90.27:0,90,1111 0/0:44,0:44:99:0,111,1380 0/0:33,0:33:84.24:0,84,1030 0/0:34,0:34:93.27:0,93,1113 0/0:29,0:29:78.21:0,78,925 0/0:27,0:27:75.22:0,75,905 0/0:62,0:63:99:0,159,1915 0/0:35,0:35:99:0,99,1185 0/0:33,0:35:84.22:0,84,991 0/0:33,0:33:93.26:0,93,1108 0/0:21,0:21:60.18:0,60,728 0/0:18,0:18:54.16:0,54,648 1 1139865 . C T 144.40 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.072;DP=1515;Dels=0.00;FS=1.429;HRun=3;HaplotypeScore=1.4629;InbreedingCoeff=-0.0121;MQ=58.90;MQ0=0;MQRankSum=0.579;QD=8.02;ReadPosRankSum=-1.536 GT:AD:DP:GQ:PL 0/0:20,0:20:48.15:0,48,610 0/0:28,0:28:66.19:0,66,827 0/0:28,0:28:75.20:0,75,907 0/0:68,0:68:99:0,175,2271 0/0:59,0:59:99:0,156,2072 0/0:38,0:38:99:0,111,1435 0/0:23,0:23:60.17:0,60,771 0/0:36,0:36:93.28:0,93,1216 0/0:32,0:32:81.24:0,81,1020 0/0:22,0:22:54.16:0,54,679 0/0:27,0:27:78.24:0,78,977 0/0:32,0:32:75.23:0,75,957 0/0:25,0:25:69.18:0,69,851 0/0:28,0:29:78.21:0,78,952 0/0:102,0:104:99:0,235,2951 0/0:40,1:41:96.28:0,96,1203 0/0:43,0:43:99:0,102,1235 0/0:26,0:26:72.21:0,72,882 0/0:57,0:58:99:0,123,1526 0/0:48,0:48:99:0,123,1567 0/0:47,0:47:99:0,117,1438 0/0:32,0:32:78.22:0,78,966 0/0:65,0:65:99:0,178,2328 0/0:27,0:27:78.21:0,78,991 0/0:17,1:18:45.15:0,45,613 0/0:30,0:30:78.22:0,78,1019 0/0:20,0:20:48.14:0,48,585 0/0:24,0:24:66.20:0,66,820 0/0:19,0:19:48.15:0,48,608 0/0:35,0:35:90.28:0,90,1140 0/0:38,0:38:99:0,99,1235 0/0:47,0:47:99:0,108,1384 0/0:34,0:34:84.23:0,84,1046 0/0:34,0:34:90.24:0,90,1108 0/0:28,1:29:39.10:0,39,862 0/0:28,0:28:72.21:0,72,888 0/0:61,1:63:99:0,150,1846 0/0:32,0:32:87.26:0,87,1083 0/0:35,1:36:87.24:0,87,1044 0/0:31,0:31:81.25:0,81,1008 0/0:21,0:21:54.14:0,54,661 0/1:11,7:18:99:191,0,372 1 1147108 . G C 225.90 . AC=15;AF=0.183;AN=82;BaseQRankSum=-5.132;DP=305;Dels=0.00;FS=49.000;HRun=1;HaplotypeScore=0.4274;InbreedingCoeff=-0.2589;MQ=57.51;MQ0=0;MQRankSum=-0.723;QD=1.93;ReadPosRankSum=-1.612 GT:AD:DP:GQ:PL 0/0:8,1:9:12.04:0,12,145 0/0:2,1:3:6:0,6,56 0/0:3,2:5:9:0,9,92 0/0:11,6:17:21.06:0,21,263 0/1:4,5:9:63.95:64,0,87 0/1:8,2:10:12.91:13,0,225 0/0:6,2:8:15.04:0,15,182 0/0:8,1:9:15.05:0,15,202 0/1:5,5:10:12.59:13,0,120 ./. 0/1:2,0:2:1.76:0,3,32 0/0:4,0:4:9.03:0,9,105 0/0:2,2:4:6:0,6,61 0/1:1,2:3:26.48:31,0,26 0/1:12,7:19:51.68:52,0,317 0/1:9,7:16:9.61:10,0,141 0/0:7,0:7:12.04:0,12,151 0/0:2,1:3:3.01:0,3,36 0/1:3,3:6:45.26:45,0,57 0/0:10,1:11:21.05:0,21,241 0/1:7,1:8:18.39:18,0,136 0/0:8,0:8:18.05:0,18,209 0/0:12,1:13:3.56:0,4,335 0/0:6,0:6:15.04:0,15,170 0/0:8,2:10:9.02:0,9,96 0/0:3,0:3:6.02:0,6,75 0/1:4,2:6:21.41:21,0,89 0/0:2,2:4:6:0,6,63 0/1:5,1:6:20.46:20,0,102 0/0:2,1:4:6.02:0,6,68 0/0:2,1:3:6.02:0,6,68 0/0:12,0:12:24.05:0,24,276 0/0:4,0:5:9.02:0,9,98 0/0:3,1:4:9.02:0,9,106 0/0:6,3:9:12.01:0,12,125 0/1:4,1:5:17.66:18,0,67 0/1:4,2:6:21.56:22,0,68 0/1:3,1:4:23.48:23,0,55 0/0:9,0:9:21.07:0,21,262 0/0:5,0:5:12.01:0,12,124 0/0:5,1:6:12.03:0,12,138 0/1:2,5:7:18.68:19,0,31 1 1178245 . C T 2279.55 . AC=9;AF=0.107;AN=84;BaseQRankSum=-2.370;DP=1053;Dels=0.00;FS=15.048;HRun=0;HaplotypeScore=0.9324;InbreedingCoeff=0.1274;MQ=58.93;MQ0=0;MQRankSum=-0.361;QD=13.49;ReadPosRankSum=0.845 GT:AD:DP:GQ:PL 0/1:10,8:18:99:215,0,293 0/1:9,5:14:99:118,0,269 0/0:16,0:16:45.11:0,45,506 0/0:70,0:70:99:0,184,2287 0/0:63,0:63:99:0,150,1908 0/0:29,0:29:81.23:0,81,975 0/0:42,0:42:99:0,99,1239 0/0:34,0:34:81.24:0,81,1005 0/1:8,9:17:99:268,0,186 1/1:0,15:15:42.11:478,42,0 0/0:14,0:14:39.10:0,39,434 0/0:8,0:8:24.07:0,24,289 0/0:16,0:16:45.11:0,45,520 0/0:10,0:10:30.07:0,30,336 0/1:36,28:64:99:692,0,935 0/0:23,0:23:60.16:0,60,710 0/1:4,10:14:79.07:270,0,79 0/0:12,0:12:33.05:0,33,371 0/0:27,0:27:78.22:0,78,896 0/0:44,0:44:99:0,120,1444 0/0:35,0:35:96.25:0,96,1143 0/0:30,0:30:81.22:0,81,935 0/0:51,0:51:99:0,123,1545 0/0:25,0:25:69.21:0,69,862 0/0:33,0:33:75.24:0,75,975 0/0:37,0:37:93.29:0,93,1175 0/0:7,0:7:15.05:0,15,191 0/1:7,5:12:99:137,0,183 0/0:14,0:14:39.11:0,39,453 0/0:15,0:15:42.12:0,42,504 0/0:22,0:22:57.17:0,57,705 0/0:55,0:55:99:0,120,1439 0/1:7,8:15:99:235,0,159 0/0:14,0:14:39.10:0,39,449 0/0:18,0:18:45.14:0,45,557 0/0:14,0:14:39.11:0,39,471 0/0:28,0:28:75.19:0,75,853 0/0:16,0:16:42.11:0,42,483 0/0:9,0:9:27.07:0,27,300 0/0:17,0:17:42.11:0,42,488 0/0:17,0:17:42.09:0,42,471 0/0:19,0:19:51.13:0,51,584 1 1179416 . A C 252.92 . AC=15;AF=0.179;AN=84;BaseQRankSum=-9.708;DP=293;Dels=0.00;FS=155.752;HRun=3;HaplotypeScore=0.1828;InbreedingCoeff=-0.2510;MQ=57.90;MQ0=0;MQRankSum=1.066;QD=1.92;ReadPosRankSum=-3.959 GT:AD:DP:GQ:PL 0/0:8,1:10:23.28:0,23,256 0/0:5,1:6:15.04:0,15,176 0/0:4,1:5:12.04:0,12,146 0/1:9,5:14:50.74:51,0,280 0/1:10,5:15:11.31:11,0,276 0/0:5,2:8:9.01:0,9,99 0/1:4,3:7:11.67:12,0,82 0/0:3,3:6:7.84:0,8,77 0/0:3,0:3:9.02:0,9,101 0/0:3,3:6:9.02:0,9,98 0/0:3,2:5:9.02:0,9,100 0/1:6,2:8:8.56:9,0,192 0/0:1,0:1:3.01:0,3,36 0/0:6,2:8:15.05:0,15,183 0/1:5,2:7:21.09:21,0,125 0/0:6,1:7:18.05:0,18,208 0/0:5,1:6:9.03:0,9,107 0/0:3,0:3:9.03:0,9,110 0/0:10,4:14:26.11:0,26,288 0/0:5,2:7:14.78:0,15,149 0/1:5,2:7:10.65:11,0,128 0/0:4,0:4:12.04:0,12,142 0/1:9,7:16:4.37:4,0,222 0/1:3,4:7:13.66:14,0,100 0/0:6,1:7:15.04:0,15,173 0/1:4,6:10:36.25:36,0,104 0/0:4,0:4:12.04:0,12,146 0/0:6,0:6:15.04:0,15,167 0/1:1,1:2:23.61:24,0,31 0/0:10,0:10:30.09:0,30,360 0/0:5,1:6:9.58:0,10,131 0/0:1,3:4:3.01:0,3,38 0/1:5,4:9:69.67:70,0,122 0/1:3,3:6:14.65:15,0,89 0/0:4,1:5:9.03:0,9,105 0/1:4,6:10:89.41:89,0,118 0/1:6,1:7:17.20:17,0,161 0/0:4,2:6:9.02:0,9,100 0/0:8,1:9:24.07:0,24,284 0/1:4,3:7:14.65:15,0,99 0/0:1,1:2:3.01:0,3,38 0/0:3,0:3:9.03:0,9,105 1 1190772 . G A 1672.02 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.908;DP=3805;Dels=0.00;FS=4.674;HRun=1;HaplotypeScore=3.3054;InbreedingCoeff=-0.0244;MQ=59.45;MQ0=0;MQRankSum=0.321;QD=12.76;ReadPosRankSum=0.943 GT:AD:DP:GQ:PL 0/0:69,0:69:99:0,181,2079 0/0:59,0:59:99:0,165,1841 0/0:58,0:58:99:0,153,1753 0/0:196,2:198:99:0,459,6448 0/0:182,0:184:99:0,518,6333 0/0:133,0:133:99:0,376,4666 0/0:122,0:122:99:0,334,4097 0/0:115,0:115:99:0,301,3713 0/0:58,0:58:99:0,171,1907 0/0:74,0:74:99:0,214,2370 0/0:49,0:49:99:0,141,1544 0/0:60,0:60:99:0,168,1900 0/0:38,0:38:99:0,99,1116 0/0:58,0:58:99:0,171,1972 0/0:198,0:198:99:0,514,5961 0/0:70,0:70:99:0,196,2254 0/0:66,0:66:99:0,186,2086 0/0:59,0:60:99:0,162,1778 0/0:123,0:123:99:0,316,3579 0/0:131,0:132:99:0,352,4026 0/0:113,0:113:99:0,301,3433 0/0:68,0:68:99:0,190,2180 0/0:222,0:222:99:0,623,7769 0/0:115,0:115:99:0,307,3820 0/0:141,0:141:99:0,376,4716 0/0:102,0:102:99:0,280,3416 0/0:63,0:63:99:0,180,2070 0/0:63,0:63:99:0,180,1993 0/0:61,0:61:99:0,165,1895 0/1:39,37:76:99:1008,0,1006 0/1:30,25:55:99:726,0,781 0/0:116,0:116:99:0,316,3620 0/0:89,0:89:99:0,244,2786 0/0:62,0:62:99:0,171,1941 0/0:59,0:59:99:0,156,1799 0/0:48,0:48:99:0,129,1453 0/0:114,0:114:99:0,316,3561 0/0:63,0:63:99:0,168,1941 0/0:65,0:65:99:0,186,2091 0/0:76,0:76:99:0,208,2332 0/0:53,0:53:99:0,138,1582 0/0:57,0:57:99:0,159,1800 1 1222220 . C T 134.83 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.049;DP=1842;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.3011;InbreedingCoeff=-0.0121;MQ=58.48;MQ0=0;MQRankSum=0.595;QD=10.37;ReadPosRankSum=1.136 GT:AD:DP:GQ:PL 0/0:19,0:19:54.16:0,54,641 0/0:31,0:31:93.25:0,93,1065 0/0:21,0:21:60.16:0,60,693 0/0:105,0:105:99:0,304,3767 0/0:100,0:100:99:0,289,3600 0/0:89,0:89:99:0,262,3303 0/0:67,0:67:99:0,199,2441 0/0:72,0:72:99:0,217,2759 0/0:24,0:25:72.18:0,72,819 0/0:37,0:37:99:0,108,1283 0/0:21,0:21:60.18:0,60,722 0/0:22,0:22:63.19:0,63,756 0/0:26,0:26:63.18:0,63,766 0/0:22,0:22:60.17:0,60,722 0/0:88,0:88:99:0,256,2954 0/0:23,0:23:66.15:0,66,748 0/0:25,0:25:72.20:0,72,834 0/0:11,0:11:33.07:0,33,368 0/0:68,0:68:99:0,177,2069 0/0:69,0:70:99:0,196,2269 0/0:53,0:53:99:0,150,1756 0/0:56,0:56:99:0,162,1889 0/0:108,0:109:99:0,316,4020 0/0:71,0:71:99:0,211,2680 0/0:87,0:87:99:0,256,3242 0/0:56,0:56:99:0,162,2017 0/0:22,0:22:66.19:0,66,760 0/0:36,0:36:99:0,105,1216 0/0:20,0:20:57.17:0,57,675 0/0:22,0:22:66.17:0,66,749 0/0:28,0:28:81.24:0,81,972 0/0:66,0:66:99:0,174,2055 0/0:45,0:45:99:0,132,1504 0/0:22,0:22:63.16:0,63,711 0/1:7,6:13:99:181,0,191 0/0:22,0:22:63.18:0,63,729 0/0:53,0:55:99:0,141,1650 0/0:26,0:26:75.21:0,75,855 0/0:21,0:21:63.17:0,63,736 0/0:23,0:23:63.16:0,63,725 0/0:21,0:21:60.17:0,60,705 0/0:26,0:26:72.21:0,72,851 1 1222267 . G C 843.41 . AC=4;AF=0.048;AN=84;BaseQRankSum=1.903;DP=1910;Dels=0.00;FS=0.651;HRun=5;HaplotypeScore=2.5206;InbreedingCoeff=-0.0500;MQ=58.47;MQ0=0;MQRankSum=0.082;QD=12.22;ReadPosRankSum=-0.364 GT:AD:DP:GQ:PL 0/0:28,0:28:72.20:0,72,851 0/0:28,0:28:69.20:0,69,841 0/0:18,0:18:51.13:0,51,589 0/0:133,0:133:99:0,358,4370 0/0:116,0:116:99:0,289,3617 0/0:104,0:104:99:0,244,3014 0/0:79,0:80:99:0,190,2377 0/0:88,0:89:99:0,199,2459 0/0:25,0:25:57.13:0,57,664 0/0:35,0:35:93.26:0,93,1095 0/0:26,0:26:66.18:0,66,771 0/0:22,0:22:60.16:0,60,688 0/0:19,0:19:54.15:0,54,613 0/0:21,0:21:48.11:0,48,557 0/0:100,0:100:99:0,238,2808 0/1:9,15:24:99:390,0,227 0/0:20,1:21:54.15:0,54,625 0/0:17,0:17:48.14:0,48,576 0/0:58,0:58:99:0,132,1546 0/0:57,0:57:99:0,138,1703 0/0:48,0:48:99:0,114,1333 0/0:49,0:49:99:0,123,1399 0/0:137,0:137:99:0,352,4380 0/0:94,1:95:99:0,223,2772 0/0:73,0:73:99:0,171,2105 0/0:70,1:71:99:0,181,2222 0/0:15,0:15:36.10:0,36,420 0/0:27,0:27:75.19:0,75,828 0/0:20,0:20:54.14:0,54,616 0/0:24,0:24:60.14:0,60,664 0/0:30,0:30:78.23:0,78,963 0/0:58,0:60:99:0,123,1533 0/0:41,0:42:99:0,117,1338 0/1:6,8:14:99:219,0,175 0/1:8,5:13:99:111,0,251 0/0:24,0:24:63.16:0,63,734 0/0:43,0:43:99:0,102,1145 0/0:19,0:19:48.11:0,48,551 0/1:10,8:18:99:210,0,234 0/0:18,0:18:42.10:0,42,492 0/0:25,0:25:60.18:0,60,732 0/0:24,0:24:66.15:0,66,750 1 1222963 . C T 1662.50 . AC=6;AF=0.071;AN=84;BaseQRankSum=4.946;DP=1194;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.2985;InbreedingCoeff=-0.0770;MQ=58.73;MQ0=1;MQRankSum=0.836;QD=12.69;ReadPosRankSum=0.327 GT:AD:DP:GQ:PL 0/0:22,0:22:63.13:0,63,672 0/0:22,0:22:60.13:0,60,628 0/0:18,0:18:51.10:0,51,536 0/0:51,0:52:99:0,135,1494 0/0:58,0:58:99:0,162,1799 0/0:60,0:60:99:0,168,1873 0/0:42,0:42:99:0,120,1374 0/0:42,0:42:99:0,111,1274 0/0:23,0:23:63.13:0,63,674 0/0:22,0:22:54.14:0,54,606 0/0:12,0:12:36.10:0,36,399 0/1:4,11:15:69.63:357,0,70 0/1:9,12:21:99:322,0,162 0/0:28,0:28:81.19:0,81,885 0/0:75,0:78:99:0,207,2228 0/0:23,0:23:69.18:0,69,779 0/0:20,0:20:57.14:0,57,604 0/0:16,0:16:45.09:0,45,480 0/0:23,0:23:48.13:0,48,542 0/0:47,0:47:99:0,129,1408 0/0:29,0:29:78.20:0,78,852 0/0:24,0:24:72.17:0,72,786 0/0:49,0:49:99:0,141,1528 0/1:15,15:30:99:409,0,428 0/1:21,15:37:99:401,0,472 0/0:38,0:38:99:0,105,1196 0/1:9,8:17:99:202,0,232 0/0:25,0:25:57.15:0,57,631 0/1:8,3:11:76.84:77,0,209 0/0:23,0:23:63.16:0,63,701 0/0:26,0:26:72.17:0,72,787 0/0:26,0:26:66.16:0,66,752 0/0:27,0:27:75.14:0,75,778 0/0:9,0:9:27.07:0,27,305 0/0:19,0:19:54.12:0,54,600 0/0:21,0:21:60.12:0,60,629 0/0:39,0:39:96.22:0,96,1036 0/0:18,0:18:48.12:0,48,530 0/0:15,0:15:39.07:0,39,448 0/0:20,0:20:57.09:0,57,607 0/0:26,0:26:72.17:0,72,766 0/0:21,0:21:54.11:0,54,576 1 1231656 . G A 329.90 . AC=4;AF=0.048;AN=84;BaseQRankSum=-1.795;DP=250;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.1478;InbreedingCoeff=-0.0836;MQ=58.47;MQ0=0;MQRankSum=1.158;QD=10.64;ReadPosRankSum=-1.352 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,178 0/0:4,0:4:12.04:0,12,153 0/0:3,0:3:9.02:0,9,96 0/0:4,0:4:12.02:0,12,141 0/0:7,0:7:15.02:0,15,188 0/0:4,0:4:12.04:0,12,159 0/0:1,0:1:3.01:0,3,42 0/0:7,0:7:18.06:0,18,239 0/0:9,0:9:24.07:0,24,291 0/0:8,0:8:21.07:0,21,268 0/0:10,0:10:21.07:0,21,287 0/0:4,0:4:12.04:0,12,157 0/0:8,0:8:21.07:0,21,276 0/0:3,0:3:9.03:0,9,116 0/0:18,0:18:48.15:0,48,617 0/0:7,0:7:21.06:0,21,258 0/0:1,0:1:3.01:0,3,38 0/1:5,4:9:99:122,0,128 0/1:7,5:12:99:135,0,197 0/0:7,0:7:18.06:0,18,230 0/0:6,0:6:12.04:0,12,155 0/0:4,0:4:12.04:0,12,146 0/0:7,0:7:18.06:0,18,247 0/0:3,0:3:3.01:0,3,45 0/0:6,0:6:15.05:0,15,206 0/0:7,0:7:15.05:0,15,214 0/0:3,0:3:9.03:0,9,112 0/0:5,0:5:12.04:0,12,152 0/0:4,0:4:9.03:0,9,123 0/0:5,0:5:15.05:0,15,190 0/0:6,0:6:18.04:0,18,204 0/0:6,0:6:15.05:0,15,200 0/0:3,0:3:9.02:0,9,97 0/0:8,0:8:24.08:0,24,301 0/0:6,0:6:15.05:0,15,201 0/0:5,0:5:12.04:0,12,160 0/0:11,0:11:33.10:0,33,413 0/0:5,0:5:15.05:0,15,185 0/0:6,0:6:18.06:0,18,222 0/1:1,1:2:32.56:33,0,33 0/1:3,5:8:92.96:126,0,93 0/0:3,0:3:9.03:0,9,108 1 1249187 . G A 93619.74 . AC=69;AF=0.821;AN=84;BaseQRankSum=15.813;DP=3579;Dels=0.00;FS=1.389;HRun=3;HaplotypeScore=2.0161;InbreedingCoeff=-0.2174;MQ=59.26;MQ0=0;MQRankSum=2.622;QD=26.16;ReadPosRankSum=2.599 GT:AD:DP:GQ:PL 0/1:48,38:86:99:1082,0,1333 0/1:63,35:98:99:902,0,1733 1/1:0,50:50:99:1794,147,0 1/1:0,139:141:99:4764,388,0 1/1:0,110:110:99:3772,304,0 1/1:0,104:104:99:3628,289,0 1/1:0,75:75:99:2581,205,0 1/1:0,86:86:99:2951,241,0 1/1:0,69:69:99:2395,199,0 0/1:48,35:83:99:945,0,1248 1/1:0,77:77:99:2700,226,0 1/1:0,76:76:99:2641,217,0 1/1:0,74:74:99:2454,199,0 1/1:0,58:58:99:2017,165,0 0/1:131,106:237:99:2872,0,3200 1/1:0,56:56:99:1950,159,0 0/1:41,33:74:99:881,0,1139 0/1:37,30:67:99:849,0,1006 0/1:46,61:107:99:1671,0,1180 1/1:0,98:98:99:3285,265,0 1/1:0,120:120:99:3974,322,0 1/1:0,72:72:99:2494,205,0 1/1:1,138:139:99:4636,351,0 1/1:0,76:76:99:2577,205,0 1/1:1,92:93:99:3235,230,0 1/1:1,71:72:99:2389,162,0 1/1:0,65:65:99:2134,174,0 0/1:38,38:76:99:1085,0,957 1/1:0,62:62:99:2137,175,0 1/1:0,66:66:99:2277,187,0 1/1:0,66:66:99:2316,190,0 1/1:0,80:80:99:2713,220,0 0/1:50,36:86:99:972,0,1297 0/1:32,34:66:99:903,0,916 0/1:39,44:83:99:1196,0,949 0/1:37,38:75:99:1061,0,997 1/1:0,103:103:99:3387,277,0 1/1:0,83:83:99:2780,229,0 0/1:32,26:58:99:777,0,888 0/1:49,30:79:99:877,0,1337 0/1:22,23:45:99:648,0,560 1/1:0,85:85:99:2919,238,0 1 1254841 . C G 122362.19 . 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G A 1810.38 . 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T A 1927.71 . AC=6;AF=0.071;AN=84;BaseQRankSum=-1.180;DP=1056;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8183;InbreedingCoeff=-0.0760;MQ=59.13;MQ0=0;MQRankSum=-0.123;QD=13.03;ReadPosRankSum=0.921 GT:AD:DP:GQ:PL 0/0:17,0:17:42.11:0,42,501 0/0:23,0:23:57.17:0,57,718 0/0:11,0:11:27.09:0,27,351 0/0:60,0:61:99:0,147,1838 0/0:53,0:53:99:0,132,1661 0/0:35,0:35:93.27:0,93,1195 0/0:32,0:33:81.21:0,81,1006 0/0:45,0:45:99:0,120,1516 0/0:20,0:20:51.15:0,51,628 0/0:9,0:9:24.07:0,24,284 0/0:16,0:16:36.10:0,36,432 0/0:8,0:8:24.07:0,24,289 0/0:12,0:12:33.09:0,33,392 0/0:26,0:26:72.22:0,72,875 0/1:28,23:51:99:517,0,868 0/1:15,15:30:99:464,0,369 0/0:17,0:17:48.15:0,48,599 0/1:5,6:11:93.04:195,0,93 0/1:12,16:28:99:447,0,368 0/0:30,0:30:78.24:0,78,962 0/0:25,0:25:72.18:0,72,848 0/0:18,0:18:48.13:0,48,576 0/0:74,0:75:99:0,187,2384 0/0:36,0:36:96.26:0,96,1171 0/0:45,0:45:99:0,111,1417 0/0:43,0:43:99:0,111,1420 0/0:16,0:16:48.15:0,48,586 0/0:21,0:21:54.15:0,54,664 0/0:14,0:14:36.12:0,36,465 0/0:21,0:22:54.17:0,54,689 0/0:25,0:25:69.21:0,69,853 0/0:20,0:20:54.16:0,54,651 0/0:12,0:12:33.10:0,33,396 0/0:14,0:14:39.12:0,39,473 0/0:15,0:16:45.14:0,45,554 0/0:19,0:19:54.17:0,54,657 0/0:17,0:17:42.13:0,42,522 0/0:16,0:16:45.14:0,45,563 0/0:21,0:21:60.18:0,60,724 0/1:5,13:18:99:398,0,134 0/1:9,1:10:10.72:11,0,257 0/0:17,0:17:45.14:0,45,560 1 1275797 . G C 298.30 . AC=17;AF=0.202;AN=84;BaseQRankSum=-7.116;DP=432;Dels=0.00;FS=232.080;HRun=2;HaplotypeScore=0.3357;InbreedingCoeff=-0.2779;MQ=56.14;MQ0=0;MQRankSum=-2.019;QD=1.55;ReadPosRankSum=-5.962 GT:AD:DP:GQ:PL 0/0:6,3:9:18.04:0,18,189 0/1:4,9:13:49.03:49,0,72 0/1:3,3:6:18.57:19,0,80 0/1:17,3:20:13.64:14,0,482 0/0:11,6:17:30.09:0,30,357 0/0:8,2:10:0.40:0,0,262 0/0:9,1:10:21.07:0,21,256 0/0:10,6:16:24.06:0,24,268 0/0:3,0:3:9.02:0,9,91 0/1:1,2:3:18.64:57,0,19 0/1:4,3:7:19.31:19,0,116 0/0:6,1:7:18.05:0,18,204 0/0:7,0:7:15.03:0,15,157 0/0:8,2:10:21.03:0,21,216 0/1:14,6:20:64.25:64,0,402 0/0:10,2:12:30.04:0,30,304 0/0:12,1:13:0.39:0,0,233 0/1:6,3:9:38.18:38,0,138 0/0:6,1:7:15.03:0,15,156 0/0:10,3:13:27.05:0,27,280 0/0:9,3:12:27.06:0,27,289 0/0:6,1:7:12.02:0,12,122 0/0:10,7:17:2.50:0,2,314 0/0:4,1:5:11.40:0,11,107 0/0:8,1:9:24.07:0,24,281 0/0:5,2:7:15.04:0,15,178 0/0:6,0:6:15.04:0,15,159 0/1:7,2:9:14.45:14,0,145 0/1:7,4:11:9.66:10,0,121 0/0:10,3:13:24.44:0,24,254 0/1:12,3:15:19.32:19,0,248 0/1:13,6:19:18.99:19,0,357 0/1:6,4:10:42.17:42,0,135 0/1:8,3:11:33.17:33,0,199 0/1:4,7:11:21.40:21,0,92 0/1:8,3:11:8.44:8,0,210 0/0:7,2:9:18.04:0,18,192 0/1:4,4:8:18.58:19,0,78 0/0:6,1:7:15.03:0,15,157 0/0:3,1:4:9:0,9,86 0/0:8,2:10:21.06:0,21,234 0/1:7,2:9:6.53:7,0,209 1 1421531 . C A 4355.32 . AC=7;AF=0.083;AN=84;BaseQRankSum=-12.433;DP=3297;DS;Dels=0.00;FS=21.484;HRun=1;HaplotypeScore=2.2821;InbreedingCoeff=-0.0909;MQ=55.14;MQ0=7;MQRankSum=-2.656;QD=10.25;ReadPosRankSum=1.497 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,138,1731 0/0:72,0:72:99:0,196,2395 0/0:36,0:36:93.29:0,93,1168 0/0:179,0:180:99:0,463,6188 0/0:134,0:134:99:0,361,4784 0/0:103,0:103:99:0,277,3634 0/0:91,0:91:99:0,232,3118 0/0:119,1:120:99:0,304,4026 0/1:31,20:51:99:476,0,898 0/1:28,15:43:99:411,0,808 0/0:37,0:37:99:0,102,1292 0/1:34,25:59:99:575,0,855 0/1:11,22:33:99:591,0,305 0/0:61,0:61:99:0,162,2042 0/0:248,0:248:99:0,620,7857 0/1:36,28:64:99:717,0,1011 0/0:70,0:70:99:0,181,2270 0/0:50,0:50:99:0,129,1607 0/0:75,0:75:99:0,196,2425 0/0:109,0:109:99:0,280,3601 0/0:102,0:102:99:0,262,3311 0/0:59,0:59:99:0,156,1974 0/0:189,0:189:99:0,497,6687 0/1:53,22:75:99:479,0,1532 0/1:59,41:100:99:1106,0,1865 0/0:95,0:95:99:0,235,3183 0/0:36,0:36:99:0,99,1256 0/0:53,0:53:99:0,141,1814 0/0:55,0:55:99:0,147,1860 0/0:37,0:37:99:0,102,1250 0/0:45,0:45:99:0,123,1569 0/0:109,0:109:99:0,259,3294 0/0:76,0:76:99:0,196,2523 0/0:53,0:53:99:0,144,1800 0/0:58,3:61:57.20:0,57,1832 0/0:67,0:67:99:0,190,2363 0/0:118,0:118:99:0,298,3758 0/0:63,1:64:99:0,144,2181 0/0:45,0:45:99:0,123,1557 0/0:52,1:53:99:0,117,1736 0/0:64,0:64:99:0,175,2167 0/0:53,1:54:99:0,144,1812 1 1571760 . G C 75.83 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.315;DP=903;Dels=0.00;FS=1.850;HRun=0;HaplotypeScore=0.4566;InbreedingCoeff=-0.0153;MQ=34.73;MQ0=227;MQRankSum=-0.835;QD=4.21;ReadPosRankSum=-0.689 GT:AD:DP:GQ:PL 0/0:27,0:27:57.15:0,57,666 0/0:16,0:16:39.09:0,39,458 0/0:14,0:14:21.06:0,21,267 0/0:25,0:25:54.17:0,54,695 0/0:27,0:27:57.17:0,57,720 0/0:24,0:24:48.14:0,48,614 0/0:12,0:12:27.09:0,27,352 0/0:19,0:19:36.09:0,36,435 0/0:16,0:16:30.08:0,30,370 0/0:14,0:14:30.06:0,30,318 0/0:16,0:16:30.09:0,30,369 0/0:25,0:25:48.13:0,48,587 0/0:16,0:16:30.09:0,30,371 0/0:30,0:30:72.21:0,72,877 0/0:46,0:47:87.25:0,87,1100 0/0:13,0:13:33.10:0,33,401 0/0:15,0:15:33.08:0,33,372 0/0:19,0:19:42.11:0,42,495 0/0:26,0:26:57.15:0,57,675 0/0:48,0:48:87.23:0,87,1040 0/0:17,0:17:33.08:0,33,369 0/1:12,6:18:99:122,0,195 0/0:30,0:30:63.19:0,63,809 0/0:22,0:22:42.12:0,42,536 0/0:25,0:25:60.16:0,60,733 0/0:21,0:21:45.13:0,45,577 0/0:6,0:6:6.01:0,6,57 0/0:20,0:20:42.09:0,42,475 0/0:10,0:10:15.03:0,15,172 0/0:19,0:19:33.09:0,33,391 0/0:14,0:14:27.07:0,27,313 0/0:36,0:36:72.21:0,72,896 0/0:31,0:31:69.21:0,69,881 0/0:24,0:24:54.16:0,54,655 0/0:21,0:21:42.11:0,42,506 0/0:19,0:19:21.06:0,21,267 0/0:23,0:23:33.09:0,33,383 0/0:21,0:21:42.12:0,42,500 0/0:16,0:16:21.06:0,21,254 0/0:23,0:23:48.15:0,48,606 0/0:24,0:24:48.12:0,48,561 0/0:14,0:14:30.09:0,30,373 1 1571829 . A G 420.95 . AC=9;AF=0.107;AN=84;BaseQRankSum=7.164;DP=727;Dels=0.00;FS=2.361;HRun=4;HaplotypeScore=0.3481;InbreedingCoeff=-0.1276;MQ=43.40;MQ0=5;MQRankSum=-2.772;QD=2.75;ReadPosRankSum=-1.572 GT:AD:DP:GQ:PL 0/1:14,2:16:31.24:31,0,426 0/0:12,0:12:36.09:0,36,410 0/0:9,0:9:21.07:0,21,275 0/0:13,0:13:39.10:0,39,467 0/0:12,0:12:36.08:0,36,420 0/1:15,6:21:99:125,0,487 0/1:12,1:13:10.58:11,0,294 0/0:10,0:10:27.08:0,27,318 0/0:17,0:17:48.15:0,48,593 0/0:15,0:15:42.12:0,42,489 0/0:16,0:16:45.14:0,45,545 0/0:11,0:11:33.09:0,33,389 0/0:18,0:18:48.15:0,48,582 0/1:19,4:23:50.57:51,0,629 0/0:41,0:41:99:0,117,1391 0/0:22,0:22:66.20:0,66,779 0/0:16,0:16:45.13:0,45,534 0/1:12,3:15:24.12:24,0,389 0/0:21,2:24:2.96:0,3,690 0/0:33,0:33:93.28:0,93,1118 0/0:36,0:36:99:0,99,1220 0/0:18,2:20:48.14:0,48,586 0/0:18,0:18:54.17:0,54,667 0/1:6,4:10:37.28:37,0,146 0/1:12,7:19:99:179,0,383 0/1:14,5:19:71.31:71,0,355 0/0:2,0:2:6.02:0,6,72 0/0:14,0:14:42.13:0,42,497 0/0:4,0:4:12.04:0,12,144 0/0:11,0:11:33.09:0,33,379 0/0:14,0:14:42.13:0,42,507 0/0:39,0:39:99:0,111,1358 0/0:27,0:27:72.21:0,72,883 0/0:12,0:12:33.10:0,33,401 0/0:11,0:11:33.10:0,33,394 0/0:10,0:10:30.09:0,30,358 0/0:25,0:25:63.19:0,63,762 0/0:17,0:17:48.13:0,48,571 0/0:10,0:10:30.09:0,30,359 0/0:15,0:15:45.12:0,45,528 0/1:15,2:17:17.32:17,0,465 0/0:19,1:20:57.14:0,57,661 1 1571841 . A C 225.77 . AC=4;AF=0.048;AN=84;BaseQRankSum=3.634;DP=607;Dels=0.00;FS=1.878;HRun=0;HaplotypeScore=0.4085;InbreedingCoeff=-0.0766;MQ=43.75;MQ0=4;MQRankSum=-3.552;QD=4.52;ReadPosRankSum=-3.760 GT:AD:DP:GQ:PL 0/0:16,1:17:8.69:0,9,428 0/0:12,0:12:36.10:0,36,419 0/0:10,0:10:27.06:0,27,304 0/0:12,0:12:36.11:0,36,430 0/0:8,0:8:24.07:0,24,288 0/1:12,2:14:30.15:30,0,324 0/0:11,1:12:0.47:0,0,306 0/0:9,0:9:27.07:0,27,316 0/0:14,0:14:42.12:0,42,480 0/0:11,1:12:14.41:0,14,372 0/0:13,0:13:39.11:0,39,452 0/0:11,0:11:33.09:0,33,379 0/0:16,0:16:42.12:0,42,487 0/0:14,2:16:1.88:3,0,409 0/0:34,0:34:99:0,102,1201 0/0:18,0:18:54.15:0,54,624 0/0:12,0:12:36.11:0,36,430 0/0:12,2:14:11.44:0,11,402 0/0:24,1:25:44.53:0,45,781 0/0:30,0:30:81.23:0,81,959 0/0:28,0:28:78.24:0,78,959 0/0:18,0:18:48.14:0,48,571 0/0:16,0:16:48.12:0,48,555 0/1:5,2:7:12.62:13,0,134 0/1:9,6:15:99:186,0,280 0/1:9,5:14:80.33:80,0,262 0/0:3,0:3:9.02:0,9,102 0/0:12,0:12:36.11:0,36,424 0/0:1,0:1:3.01:0,3,35 0/0:10,0:10:27.08:0,27,321 0/0:9,0:9:27.07:0,27,317 0/0:34,0:34:93.26:0,93,1111 0/0:24,0:24:72.21:0,72,837 0/0:9,0:9:24.07:0,24,284 0/0:10,0:10:27.09:0,27,341 0/0:11,0:11:33.09:0,33,375 0/0:15,0:15:42.12:0,42,495 0/0:15,0:15:39.11:0,39,452 0/0:8,0:8:24.07:0,24,285 0/0:11,0:11:33.10:0,33,390 0/0:10,1:11:5.42:0,5,315 0/0:17,0:17:51.14:0,51,583 1 1635004 . T C 12554.94 . AC=51;AF=0.607;AN=84;BaseQRankSum=11.428;DP=834;Dels=0.00;FS=1.445;HRun=0;HaplotypeScore=0.6128;InbreedingCoeff=0.0449;MQ=40.20;MQ0=30;MQRankSum=-8.044;QD=17.41;ReadPosRankSum=2.401 GT:AD:DP:GQ:PL 1/1:0,10:10:21.05:246,21,0 1/1:0,12:12:27.06:316,27,0 1/1:0,11:11:30.05:333,30,0 1/1:0,24:24:60.18:782,60,0 0/1:14,10:24:99:203,0,404 1/1:0,10:10:21.05:254,21,0 1/1:0,7:7:15.04:185,15,0 0/1:8,10:18:99:206,0,200 0/1:11,4:15:64:64,0,302 0/1:7,9:16:99:197,0,192 0/1:10,9:19:99:225,0,251 1/1:0,21:21:48.12:563,48,0 1/1:0,18:18:39.09:460,39,0 1/1:1,8:9:24.04:245,24,0 1/1:0,28:28:66.17:799,66,0 0/0:6,0:6:18.05:0,18,211 1/1:0,23:23:57.12:641,57,0 0/0:7,0:7:21.06:0,21,256 0/0:22,1:23:20.73:0,21,609 0/1:26,13:39:99:231,0,694 0/1:22,19:41:99:429,0,522 0/1:14,15:29:99:398,0,362 1/1:0,23:23:60.13:677,60,0 0/1:9,1:10:6.35:6,0,277 0/0:2,0:2:6.01:0,6,62 0/0:11,0:11:27.08:0,27,334 0/1:6,25:31:99:604,0,128 0/1:11,10:21:99:264,0,292 0/1:7,17:24:99:472,0,184 0/1:12,8:20:99:135,0,358 0/1:9,7:16:99:141,0,278 0/0:44,0:44:99:0,114,1394 1/1:0,21:21:48.11:563,48,0 0/1:11,9:20:99:187,0,337 1/1:1,18:19:13.32:492,13,0 0/1:16,17:33:99:409,0,434 0/1:17,19:36:99:425,0,481 0/0:20,0:20:48.15:0,48,614 1/1:0,9:9:24.05:262,24,0 1/1:0,25:25:69.14:752,69,0 0/1:13,7:20:99:109,0,410 0/1:8,11:19:99:281,0,239 1 1635264 . T C 272.57 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.129;DP=1495;Dels=0.00;FS=6.260;HRun=2;HaplotypeScore=2.0977;InbreedingCoeff=-0.0121;MQ=57.87;MQ0=0;MQRankSum=1.436;QD=12.39;ReadPosRankSum=0.765 GT:AD:DP:GQ:PL 0/0:27,1:28:69.20:0,69,852 0/0:28,0:28:72.22:0,72,896 0/0:33,1:34:87.25:0,87,1044 0/0:54,0:54:99:0,147,1705 0/0:43,0:43:99:0,120,1384 0/0:37,1:38:93.27:0,93,1150 0/0:32,0:32:90.21:0,90,1036 0/0:36,0:36:90.25:0,90,1089 0/0:20,2:22:29.47:0,29,599 0/0:22,0:22:57.18:0,57,704 0/0:26,1:27:60.18:0,60,721 0/0:27,1:28:69.20:0,69,832 0/1:10,12:22:99:319,0,241 0/0:35,1:36:84.21:0,84,1022 0/0:37,2:39:93.26:0,93,1092 0/0:13,0:13:30.08:0,30,350 0/0:37,0:37:87.19:0,87,981 0/0:16,1:17:45.13:0,45,533 0/0:39,1:40:93.23:0,93,1089 0/0:59,0:59:99:0,162,1917 0/0:41,3:44:99:0,111,1313 0/0:37,1:38:99:0,105,1270 0/0:47,1:48:99:0,132,1524 0/0:54,1:55:99:0,135,1590 0/0:54,2:56:99:0,121,1660 0/0:48,0:48:99:0,129,1509 0/0:38,0:38:90.25:0,90,1077 0/0:21,1:22:54.15:0,54,650 0/0:31,1:32:78.22:0,78,924 0/0:35,0:35:87.25:0,87,1050 0/0:25,1:26:72.21:0,72,876 0/0:61,1:62:99:0,159,1882 0/0:42,0:42:99:0,105,1248 0/0:18,0:18:42.13:0,42,499 0/0:22,0:22:54.15:0,54,655 0/0:35,1:36:81.25:0,81,1006 0/0:49,1:51:99:0,129,1557 0/0:34,1:35:90.27:0,90,1100 0/0:29,1:30:72.18:0,72,841 0/0:27,0:27:75.21:0,75,880 0/0:38,1:39:99:0,99,1165 0/0:34,1:35:81.16:0,81,923 1 1635749 . C A 12328.27 . 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A G 271.08 . AC=1;AF=0.012;AN=84;BaseQRankSum=10.015;DP=6772;DS;Dels=0.00;FS=52.756;HRun=0;HaplotypeScore=3.8091;InbreedingCoeff=-0.0120;MQ=45.60;MQ0=232;MQRankSum=-14.703;QD=1.15;ReadPosRankSum=-5.146 GT:AD:DP:GQ:PL 0/0:76,9:85:99:0,205,2333 0/0:148,0:148:99:0,385,4515 0/0:123,0:123:99:0,331,3854 0/0:216,0:216:99:0,581,7024 0/0:238,0:238:99:0,632,7703 0/0:245,0:246:99:0,532,6350 0/0:236,1:239:99:0,559,6509 0/0:245,0:245:99:0,611,7454 0/0:129,0:129:99:0,343,3922 0/0:121,0:121:99:0,313,3584 0/0:107,0:107:99:0,286,3247 0/0:126,0:127:99:0,319,3696 0/0:111,0:112:99:0,283,3277 0/0:69,10:79:99:0,154,2065 0/0:223,1:225:99:0,556,6479 0/0:58,0:58:99:0,153,1743 0/0:130,0:130:99:0,340,4017 0/0:53,6:59:99:0,114,1640 0/0:140,20:160:99:0,321,4113 0/0:250,0:250:99:0,656,7525 0/0:248,1:250:99:0,634,7270 0/0:167,0:168:99:0,448,5143 0/1:161,74:235:99:317,0,4588 0/0:182,43:227:99:0,351,5599 0/0:119,65:187:99:0,172,3566 0/0:107,44:151:99:0,205,3136 0/0:152,1:153:99:0,418,4677 0/0:142,1:143:99:0,394,4524 0/0:193,0:193:99:0,499,5795 0/0:141,0:141:99:0,382,4382 0/0:127,0:127:99:0,346,3936 0/0:242,1:243:99:0,614,7297 0/0:188,0:188:99:0,490,5663 0/0:130,0:130:99:0,352,3987 0/0:103,0:104:99:0,286,3229 0/0:154,1:156:99:0,412,4790 0/0:244,0:244:99:0,604,7026 0/0:112,0:112:99:0,274,3162 0/0:137,0:137:99:0,385,4431 0/0:148,0:148:99:0,409,4548 0/0:114,17:131:99:0,274,3577 0/0:106,0:106:99:0,304,3411 1 1636400 . G A 334.32 . 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T C 61154.13 . AC=42;AF=0.500;AN=84;BaseQRankSum=31.135;DP=6085;DS;Dels=0.00;FS=113.954;HRun=0;HaplotypeScore=1.9219;InbreedingCoeff=-1.0000;MQ=52.27;MQ0=0;MQRankSum=-39.492;QD=10.05;ReadPosRankSum=3.000 GT:AD:DP:GQ:PL 0/1:75,39:114:99:912,0,2203 0/1:73,57:130:99:1380,0,2025 0/1:58,45:103:99:1201,0,1677 0/1:125,97:222:99:2401,0,3731 0/1:104,89:193:99:2322,0,3024 0/1:111,77:188:99:1929,0,3384 0/1:102,62:164:99:1381,0,3119 0/1:92,82:174:99:2024,0,2578 0/1:86,33:119:99:743,0,2499 0/1:47,44:91:99:1152,0,1360 0/1:58,41:99:99:1023,0,1728 0/1:64,43:107:99:1136,0,1812 0/1:49,43:92:99:1066,0,1425 0/1:52,30:82:99:690,0,1526 0/1:98,146:244:99:3845,0,2456 0/1:31,33:64:99:913,0,889 0/1:60,35:95:99:839,0,1750 0/1:64,50:114:99:1242,0,1904 0/1:110,90:200:99:2319,0,3160 0/1:146,94:240:99:2118,0,4260 0/1:137,104:241:99:2399,0,3933 0/1:107,52:159:99:1173,0,3157 0/1:140,110:250:99:2763,0,4080 0/1:196,49:245:99:863,0,6020 0/1:152,68:220:99:1528,0,4702 0/1:135,66:201:99:1599,0,3988 0/1:41,24:65:99:615,0,1265 0/1:58,35:93:99:902,0,1676 0/1:56,38:94:99:941,0,1600 0/1:52,37:89:99:996,0,1546 0/1:51,46:97:99:1159,0,1530 0/1:124,115:240:99:2957,0,3590 0/1:80,49:129:99:1213,0,2264 0/1:58,35:93:99:916,0,1692 0/1:70,45:115:99:1095,0,2073 0/1:61,45:106:99:1199,0,1822 0/1:115,129:245:99:3265,0,3142 0/1:69,40:109:99:1029,0,1970 0/1:70,40:110:99:954,0,2133 0/1:62,44:106:99:1134,0,1783 0/1:95,33:128:99:683,0,2913 0/1:71,44:115:99:1136,0,2141 1 1647871 . T C 32687.46 . AC=42;AF=0.500;AN=84;BaseQRankSum=31.107;DP=3835;DS;Dels=0.00;FS=11.674;HRun=1;HaplotypeScore=1.9362;InbreedingCoeff=-1.0000;MQ=52.80;MQ0=0;MQRankSum=-30.833;QD=8.52;ReadPosRankSum=-3.723 GT:AD:DP:GQ:PL 0/1:46,14:60:99:300,0,1440 0/1:55,29:84:99:691,0,1703 0/1:35,23:58:99:655,0,1016 0/1:94,42:136:99:1084,0,2900 0/1:99,43:142:99:1030,0,2854 0/1:80,32:112:99:835,0,2488 0/1:74,32:106:99:854,0,2241 0/1:60,41:101:99:1193,0,1759 0/1:39,22:61:99:588,0,1132 0/1:31,18:49:99:498,0,873 0/1:46,20:66:99:489,0,1425 0/1:41,24:65:99:650,0,1187 0/1:36,24:60:99:609,0,1018 0/1:37,21:58:99:518,0,1121 0/1:82,82:164:99:2234,0,2277 0/1:18,20:38:99:533,0,458 0/1:36,14:50:99:294,0,1119 0/1:50,29:79:99:699,0,1563 0/1:72,44:116:99:1070,0,2107 0/1:102,52:154:99:1316,0,3100 0/1:98,61:159:99:1608,0,2788 0/1:57,29:86:99:660,0,1664 0/1:90,56:146:99:1503,0,2722 0/1:143,25:168:99:424,0,4449 0/1:120,38:158:99:786,0,3654 0/1:115,33:148:99:694,0,3472 0/1:29,15:44:99:386,0,915 0/1:51,24:75:99:622,0,1541 0/1:33,22:55:99:599,0,980 0/1:36,18:54:99:484,0,1088 0/1:40,27:67:99:727,0,1180 0/1:80,43:123:99:1138,0,2412 0/1:62,27:89:99:657,0,1867 0/1:40,23:63:99:609,0,1230 0/1:59,17:76:99:353,0,1878 0/1:41,25:66:99:695,0,1242 0/1:73,62:135:99:1770,0,1930 0/1:45,28:73:99:730,0,1357 0/1:48,19:67:99:450,0,1459 0/1:43,32:75:99:907,0,1264 0/1:60,19:80:99:417,0,1834 0/1:53,16:69:99:327,0,1692 1 1647873 . G T 350.28 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.159;DP=3781;DS;Dels=0.00;FS=0.746;HRun=3;HaplotypeScore=2.0825;InbreedingCoeff=-0.0244;MQ=52.59;MQ0=0;MQRankSum=-2.544;QD=1.66;ReadPosRankSum=-1.015 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,171,1990 0/0:82,0:82:99:0,235,2681 0/0:58,0:58:99:0,168,1984 0/0:136,0:136:99:0,388,4775 0/0:136,0:136:99:0,373,4628 0/1:98,13:111:99:140,0,3255 0/1:84,16:100:99:273,0,2724 0/0:97,0:97:99:0,283,3469 0/0:61,0:61:99:0,181,2108 0/0:50,0:50:99:0,144,1626 0/0:68,0:68:99:0,190,2218 0/0:63,0:63:99:0,184,2122 0/0:64,0:64:99:0,174,2040 0/0:55,0:55:99:0,165,1890 0/0:165,0:165:99:0,475,5410 0/0:35,0:35:99:0,99,1134 0/0:47,0:47:99:0,138,1627 0/0:78,0:78:99:0,220,2557 0/0:116,0:116:99:0,319,3705 0/0:155,0:155:99:0,442,5127 0/0:152,0:153:99:0,439,5136 0/0:80,1:81:99:0,226,2601 0/0:141,0:141:99:0,409,5068 0/0:170,1:171:99:0,438,5992 0/0:156,0:156:99:0,436,5359 0/0:145,1:146:99:0,403,5019 0/0:45,0:45:99:0,129,1509 0/0:74,0:74:99:0,208,2383 0/0:56,0:56:99:0,159,1840 0/0:59,0:59:99:0,168,1986 0/0:65,0:66:99:0,193,2213 0/0:123,0:123:99:0,358,4197 0/0:84,0:84:99:0,247,2845 0/0:62,0:63:99:0,177,2044 0/0:76,0:76:99:0,226,2583 0/0:64,0:64:99:0,187,2152 0/0:130,0:130:99:0,367,4210 0/0:66,0:66:99:0,196,2250 0/0:68,1:69:99:0,157,2192 0/0:75,0:75:99:0,217,2471 0/0:78,0:78:99:0,220,2562 0/0:69,0:69:99:0,202,2351 1 1647893 . C CTTTCTT 40928.39 . AC=42;AF=0.500;AN=84;BaseQRankSum=-1.865;DP=2949;FS=175.234;HRun=0;HaplotypeScore=427.8945;InbreedingCoeff=-1.0000;MQ=52.37;MQ0=0;MQRankSum=-24.552;QD=13.88;ReadPosRankSum=-4.159 GT:AD:DP:GQ:PL 0/1:35,7:42:99:715,0,1875 0/1:52,7:60:99:639,0,2523 0/1:41,9:52:99:1026,0,1757 0/1:89,16:108:99:1417,0,4417 0/1:88,15:103:99:1522,0,4179 0/1:71,9:78:99:989,0,3162 0/1:82,5:86:99:711,0,3423 0/1:61,14:72:99:1236,0,2988 0/1:42,10:54:99:930,0,2142 0/1:32,4:38:99:478,0,1451 0/1:47,6:54:99:466,0,1871 0/1:38,8:47:99:841,0,1557 0/1:37,3:43:99:297,0,1485 0/1:33,4:38:99:419,0,1300 0/1:97,32:131:99:3153,0,3620 0/1:22,3:26:99:322,0,821 0/1:39,7:46:99:768,0,1631 0/1:52,8:62:99:679,0,2153 0/1:83,15:101:99:1733,0,3177 0/1:95,10:107:99:875,0,4028 0/1:97,21:120:99:2145,0,3818 0/1:38,8:47:99:878,0,1411 0/1:96,22:121:99:2080,0,4722 0/1:131,6:132:99:522,0,6769 0/1:97,15:109:99:1701,0,4367 0/1:107,10:116:99:1018,0,5349 0/1:32,7:39:99:610,0,1328 0/1:46,6:56:99:732,0,2200 0/1:25,10:36:99:1047,0,967 0/1:49,6:57:99:754,0,2235 0/1:39,5:45:99:433,0,1772 0/1:90,13:105:99:979,0,3962 0/1:58,6:65:99:586,0,2497 0/1:47,6:54:99:727,0,2109 0/1:55,9:65:99:892,0,2784 0/1:44,6:52:99:779,0,1619 0/1:61,24:88:99:2583,0,2236 0/1:39,8:49:99:689,0,1646 0/1:46,6:54:99:760,0,1975 0/1:44,12:57:99:1015,0,2089 0/1:50,4:54:99:246,0,2440 0/1:47,7:54:99:540,0,2403 1 1663960 . G A 671.57 . AC=3;AF=0.036;AN=84;BaseQRankSum=-4.366;DP=508;Dels=0.00;FS=21.470;HRun=1;HaplotypeScore=0.4273;InbreedingCoeff=-0.0442;MQ=59.18;MQ0=0;MQRankSum=-0.525;QD=13.17;ReadPosRankSum=0.479 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,283 0/0:10,0:10:24.07:0,24,299 0/0:5,0:5:15.05:0,15,185 0/1:8,15:23:99:406,0,186 0/1:8,8:16:99:248,0,268 0/0:26,0:26:60.19:0,60,799 0/0:14,0:14:42.13:0,42,541 0/0:20,0:20:51.16:0,51,677 0/0:7,0:7:18.06:0,18,225 0/0:7,0:7:21.06:0,21,249 0/0:7,0:7:15.05:0,15,196 0/0:3,0:3:9.03:0,9,109 0/0:8,0:8:24.07:0,24,298 0/0:11,0:11:27.06:0,27,329 0/0:17,0:17:45.12:0,45,559 0/0:5,0:5:12.02:0,12,146 0/0:10,0:10:30.09:0,30,365 0/0:7,0:7:21.07:0,21,267 0/0:11,0:12:27.08:0,27,324 0/0:13,0:13:39.12:0,39,497 0/0:9,0:9:24.06:0,24,283 0/0:6,0:6:15.05:0,15,191 0/0:32,0:32:78.25:0,78,1037 0/0:41,0:42:99:0,108,1421 0/0:26,0:26:75.24:0,75,986 0/0:23,0:23:63.18:0,63,814 0/0:3,0:3:9.03:0,9,116 0/1:8,4:12:92.41:92,0,263 0/0:8,0:8:21.06:0,21,263 0/0:9,0:9:27.04:0,27,297 0/0:6,0:6:18.03:0,18,213 0/0:17,0:17:42.13:0,42,538 0/0:6,0:6:15.05:0,15,190 0/0:7,0:7:18.06:0,18,235 0/0:11,0:11:30.09:0,30,374 0/0:9,0:9:24.07:0,24,292 0/0:12,0:12:36.09:0,36,439 0/0:7,0:7:15.05:0,15,197 0/0:8,0:8:21.06:0,21,263 0/0:8,0:8:24.07:0,24,287 0/0:12,0:12:36.09:0,36,434 0/0:6,0:6:18.04:0,18,209 1 1847979 . T C 2327.61 . AC=9;AF=0.107;AN=84;BaseQRankSum=4.715;DP=923;Dels=0.00;FS=13.928;HRun=0;HaplotypeScore=0.8571;InbreedingCoeff=-0.1202;MQ=58.78;MQ0=0;MQRankSum=0.963;QD=12.93;ReadPosRankSum=-0.937 GT:AD:DP:GQ:PL 0/1:3,7:10:75.58:210,0,76 0/0:16,0:16:48.14:0,48,558 0/0:16,0:17:48.11:0,48,536 0/0:43,0:44:99:0,117,1330 0/0:24,0:25:69.15:0,69,750 0/1:8,13:21:99:383,0,203 0/1:13,11:24:99:266,0,330 0/0:33,0:34:90.23:0,90,1023 0/1:8,10:18:99:320,0,190 0/1:8,9:17:99:258,0,230 0/0:22,0:22:57.17:0,57,678 0/0:19,0:19:54.15:0,54,626 0/0:11,0:11:30.07:0,30,335 0/1:5,10:15:99:289,0,112 0/0:50,0:51:99:0,141,1602 0/0:25,0:25:69.17:0,69,784 0/0:9,0:10:21.06:0,21,249 0/1:12,8:20:99:205,0,288 0/1:14,13:27:99:260,0,393 0/0:33,0:34:93.28:0,93,1103 0/0:27,0:27:72.20:0,72,850 0/0:24,1:25:69.18:0,69,780 0/0:34,0:34:99:0,99,1131 0/0:24,0:24:72.18:0,72,804 0/1:18,10:28:99:266,0,455 0/0:15,0:15:39.12:0,39,473 0/0:21,0:21:57.16:0,57,657 0/0:16,0:16:45.13:0,45,528 0/0:14,0:14:42.11:0,42,480 0/0:10,0:10:27.06:0,27,310 0/0:22,0:23:57.12:0,57,628 0/0:28,0:28:81.23:0,81,942 0/0:23,0:23:60.18:0,60,720 0/0:20,0:21:54.13:0,54,622 0/0:21,0:21:60.13:0,60,673 0/0:16,0:16:39.11:0,39,452 0/0:30,0:31:75.21:0,75,874 0/0:16,0:16:45.13:0,45,536 0/0:16,0:16:45.13:0,45,526 0/0:16,0:16:42.12:0,42,497 0/0:23,0:24:66.16:0,66,741 0/0:14,0:14:33.10:0,33,406 1 1849744 . G A 4595.96 . AC=9;AF=0.107;AN=84;BaseQRankSum=4.536;DP=1742;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.0694;InbreedingCoeff=-0.1200;MQ=58.40;MQ0=0;MQRankSum=-1.094;QD=13.17;ReadPosRankSum=-1.847 GT:AD:DP:GQ:PL 0/1:21,23:44:99:540,0,553 0/0:40,0:40:93.23:0,93,1054 0/0:20,0:20:54.15:0,54,617 0/0:95,0:95:99:0,250,3019 0/0:71,0:71:99:0,180,2181 0/1:25,29:54:99:824,0,511 0/1:25,16:41:99:389,0,662 0/0:55,0:55:99:0,135,1669 0/1:22,18:40:99:485,0,559 0/1:10,17:27:99:474,0,190 0/0:40,1:41:74.86:0,75,1149 0/0:31,0:31:75.21:0,75,875 0/0:27,0:27:66.12:0,66,685 0/1:17,17:34:99:440,0,406 0/0:89,0:90:99:0,232,2590 0/0:29,0:29:84.22:0,84,935 0/0:40,0:40:99:0,108,1234 0/1:13,10:23:99:249,0,346 0/1:22,30:52:99:786,0,467 0/0:49,0:49:99:0,135,1550 0/0:39,0:39:99:0,102,1147 0/0:29,0:29:75.16:0,75,851 0/0:104,0:104:99:0,262,3238 0/0:35,0:35:90.25:0,90,1116 0/1:18,16:34:99:407,0,412 0/0:42,0:42:99:0,108,1303 0/0:37,1:38:51.99:0,52,972 0/0:45,0:45:99:0,111,1276 0/0:22,1:23:31.83:0,32,675 0/0:33,0:33:78.21:0,78,903 0/0:18,0:18:54.15:0,54,618 0/0:36,0:36:99:0,99,1115 0/0:45,0:45:99:0,120,1340 0/0:41,0:41:99:0,102,1168 0/0:29,0:29:78.22:0,78,901 0/0:30,0:30:84.21:0,84,939 0/0:41,0:42:99:0,105,1186 0/0:35,1:36:99:0,99,1096 0/0:31,0:31:84.21:0,84,920 0/0:44,0:44:99:0,117,1295 0/0:37,3:40:32.72:0,33,1045 0/0:25,0:25:69.18:0,69,787 1 1855221 . A AAG 1468.84 . AC=1;AF=0.012;AN=84;BaseQRankSum=-7.355;DP=4038;FS=0.646;HRun=0;HaplotypeScore=291.7376;InbreedingCoeff=-0.0120;MQ=59.28;MQ0=0;MQRankSum=1.443;QD=14.99;ReadPosRankSum=-0.083 GT:AD:DP:GQ:PL 0/0:66,0:66:99:0,193,2637 0/0:62,0:62:99:0,175,2347 0/0:73,0:73:99:0,205,2809 0/0:213,0:213:99:0,611,8462 0/0:185,0:185:99:0,527,7307 0/0:133,0:133:99:0,385,5298 0/0:137,0:134:99:0,373,5187 0/0:133,0:130:99:0,373,5179 0/0:69,0:69:99:0,184,2517 0/0:61,0:61:99:0,169,2302 0/0:64,0:64:99:0,178,2412 0/0:61,0:61:99:0,178,2424 0/0:39,0:39:99:0,102,1384 0/0:70,0:70:99:0,196,2697 0/0:217,0:217:99:0,593,8151 0/0:76,0:76:99:0,214,2935 0/0:74,0:74:99:0,220,3025 0/0:57,0:56:99:0,156,2128 0/0:132,0:132:99:0,364,5059 0/0:137,0:137:99:0,385,5308 0/0:145,0:145:99:0,415,5715 0/0:91,0:91:99:0,259,3574 0/0:225,0:225:99:0,638,8878 0/0:117,0:115:99:0,334,4606 0/0:128,0:124:99:0,358,4893 0/1:63,33:95:99:1524,0,2043 0/0:45,0:45:99:0,132,1797 0/0:64,0:64:99:0,184,2538 0/0:57,0:57:99:0,166,2295 0/0:75,0:75:99:0,220,3028 0/0:59,0:59:99:0,166,2259 0/0:161,0:161:99:0,433,6008 0/0:82,0:82:99:0,247,3410 0/0:54,0:54:99:0,153,2078 0/0:60,0:60:99:0,178,2420 0/0:91,0:90:99:0,250,3452 0/0:122,0:122:99:0,346,4728 0/0:66,0:66:99:0,175,2402 0/0:48,0:48:99:0,138,1920 0/0:64,0:64:99:0,178,2432 0/0:44,0:44:99:0,126,1736 0/0:83,0:83:99:0,235,3253 1 1855319 . C T 8765.47 . AC=10;AF=0.119;AN=84;BaseQRankSum=-7.348;DP=2775;DS;Dels=0.00;FS=0.488;HRun=2;HaplotypeScore=2.3827;InbreedingCoeff=-0.1351;MQ=59.29;MQ0=0;MQRankSum=-0.630;QD=14.23;ReadPosRankSum=-1.127 GT:AD:DP:GQ:PL 0/1:24,29:53:99:810,0,716 0/0:39,0:40:99:0,108,1342 0/0:38,0:38:99:0,105,1357 0/0:165,0:165:99:0,445,5948 0/0:113,0:113:99:0,307,4145 0/1:42,35:77:99:914,0,1224 0/1:34,43:77:99:1247,0,905 0/0:94,0:94:99:0,256,3406 0/1:35,22:57:99:634,0,1039 0/1:23,24:47:99:605,0,656 0/0:38,0:38:99:0,105,1324 0/0:49,0:49:99:0,141,1754 0/0:32,0:32:90.27:0,90,1100 0/1:19,25:44:99:733,0,566 0/0:170,0:170:99:0,460,5850 0/0:50,0:50:99:0,150,1860 0/0:56,0:56:99:0,159,2009 0/1:15,23:38:99:717,0,421 0/1:41,40:82:99:1111,0,1146 0/0:98,0:98:99:0,271,3399 0/0:96,0:96:99:0,268,3354 0/0:72,0:72:99:0,193,2415 0/0:129,0:129:99:0,358,4824 0/0:58,0:58:99:0,156,2064 0/1:34,31:65:99:840,0,1018 0/1:33,43:76:99:1154,0,975 0/0:32,0:32:93.29:0,93,1165 0/0:51,0:51:99:0,138,1720 0/0:37,0:37:99:0,102,1280 0/0:58,0:58:99:0,156,1990 0/0:41,0:41:99:0,117,1489 0/0:111,0:111:99:0,295,3751 0/0:74,0:74:99:0,211,2680 0/0:41,0:41:99:0,117,1467 0/0:49,1:50:99:0,103,1701 0/0:64,0:64:99:0,172,2198 0/0:93,0:93:99:0,250,3103 0/0:47,0:47:99:0,129,1647 0/0:40,0:40:99:0,108,1341 0/0:55,0:56:99:0,150,1924 0/0:21,0:21:63.18:0,63,779 0/0:45,0:45:99:0,129,1612 1 1916890 . C T 27461.99 . AC=35;AF=0.417;AN=84;BaseQRankSum=-35.072;DP=3057;Dels=0.00;FS=3.217;HRun=0;HaplotypeScore=2.1365;InbreedingCoeff=0.1673;MQ=59.24;MQ0=0;MQRankSum=-1.765;QD=17.51;ReadPosRankSum=-2.539 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1374,120,0 1/1:0,46:46:99:1460,123,0 1/1:0,53:53:99:1646,144,0 0/0:156,0:156:99:0,403,5442 0/0:112,0:112:99:0,292,3979 0/0:83,0:83:99:0,208,2850 0/0:80,0:80:99:0,214,2895 0/1:43,47:90:99:1193,0,1288 1/1:0,51:51:99:1423,123,0 1/1:0,41:41:99:1319,117,0 1/1:0,44:44:99:1323,111,0 0/1:21,26:47:99:705,0,578 0/1:26,19:45:99:478,0,779 0/0:61,0:61:99:0,166,2126 0/0:183,0:183:99:0,463,5948 0/0:51,0:51:99:0,141,1763 0/1:26,24:50:99:665,0,811 0/1:23,23:46:99:605,0,634 1/1:0,83:83:99:2677,226,0 0/1:67,58:125:99:1496,0,1973 0/0:109,0:109:99:0,286,3665 0/1:37,32:69:99:779,0,1110 0/0:158,0:158:99:0,424,5745 0/0:91,0:91:99:0,223,3073 0/1:58,53:111:99:1317,0,1794 0/0:83,0:83:99:0,214,2911 1/1:0,27:27:69.19:811,69,0 1/1:0,51:51:99:1554,132,0 0/1:21,21:42:99:533,0,594 0/1:31,30:61:99:716,0,881 0/1:22,23:45:99:537,0,666 0/1:75,58:133:99:1394,0,2202 0/1:33,43:76:99:1140,0,894 0/1:28,22:50:99:632,0,854 0/1:25,24:49:99:657,0,694 0/1:26,22:48:99:574,0,784 0/0:130,0:130:99:0,337,4305 0/0:55,0:55:99:0,147,1878 0/0:48,0:48:99:0,126,1590 0/0:44,0:44:99:0,126,1579 0/0:45,0:45:99:0,126,1577 0/1:25,18:43:99:453,0,788 1 1987993 . T C 17263.16 . AC=32;AF=0.381;AN=84;BaseQRankSum=-11.766;DP=1763;Dels=0.00;FS=0.806;HRun=0;HaplotypeScore=1.1054;InbreedingCoeff=0.1923;MQ=58.74;MQ0=0;MQRankSum=2.292;QD=18.11;ReadPosRankSum=-0.011 GT:AD:DP:GQ:PL 0/0:33,0:33:90.25:0,90,1076 0/1:19,15:34:99:353,0,543 0/1:23,15:38:99:398,0,618 0/0:93,0:93:99:0,241,2998 0/0:90,0:90:99:0,238,2974 1/1:0,44:44:99:1464,123,0 1/1:0,28:28:75.22:894,75,0 0/1:27,27:54:99:733,0,699 0/0:38,0:38:99:0,102,1257 0/1:11,12:23:99:301,0,294 0/1:22,8:30:99:151,0,639 0/0:29,1:30:54.73:0,55,940 0/0:26,0:26:69.21:0,69,847 0/0:36,0:36:99:0,108,1277 0/0:104,0:104:99:0,256,3115 0/1:13,20:33:99:515,0,375 0/0:34,0:34:93.28:0,93,1124 1/1:0,27:27:72.19:834,72,0 1/1:0,63:63:99:1849,159,0 1/1:0,56:56:99:1722,150,0 1/1:0,53:53:99:1694,147,0 0/1:18,19:37:99:476,0,518 0/1:43,37:80:99:1035,0,1189 0/0:35,0:35:90.28:0,90,1143 0/0:56,0:56:99:0,144,1797 0/1:22,17:39:99:452,0,565 0/0:23,1:24:35.77:0,36,757 0/0:40,0:40:93.28:0,93,1138 0/0:32,1:33:93.28:0,93,1129 0/0:32,0:32:93.27:0,93,1115 0/0:27,0:27:78.23:0,78,935 0/1:28,20:48:99:467,0,825 0/1:20,13:33:99:342,0,559 0/1:17,11:28:99:273,0,458 1/1:0,26:26:75.21:859,75,0 0/0:51,1:52:99:0,141,1715 0/1:36,20:56:99:492,0,1009 0/1:20,15:35:99:377,0,528 0/0:27,0:27:75.21:0,75,899 1/1:0,29:29:81.22:921,81,0 0/1:13,16:29:99:446,0,372 0/1:19,10:29:99:212,0,573 1 2304000 . G T 699.56 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.316;DP=1572;Dels=0.00;FS=6.612;HRun=0;HaplotypeScore=1.0105;InbreedingCoeff=-0.0244;MQ=59.19;MQ0=0;MQRankSum=-0.336;QD=10.44;ReadPosRankSum=-0.648 GT:AD:DP:GQ:PL 0/0:26,0:26:66.19:0,66,804 0/0:24,0:24:69.20:0,69,816 0/0:31,0:31:84.24:0,84,1014 0/0:58,0:58:99:0,153,1975 0/0:50,0:50:99:0,144,1911 0/0:53,0:53:99:0,135,1784 0/0:29,0:29:66.22:0,66,918 0/0:37,0:37:99:0,102,1367 0/0:30,0:30:84.25:0,84,1011 0/0:24,0:24:57.18:0,57,739 0/0:20,1:21:28.51:0,29,610 0/0:19,0:20:51.16:0,51,638 0/0:30,0:30:78.23:0,78,947 0/0:29,0:29:78.20:0,78,916 0/0:105,0:105:99:0,253,3139 0/0:42,0:42:99:0,117,1414 0/0:36,0:36:99:0,99,1214 0/0:36,0:36:90.26:0,90,1110 0/0:58,0:58:99:0,147,1772 0/0:48,0:48:99:0,117,1464 0/0:48,0:48:99:0,123,1454 0/0:29,0:29:84.25:0,84,1031 0/0:73,0:73:99:0,193,2555 0/1:16,15:31:99:489,0,490 0/0:52,0:52:99:0,129,1701 0/1:26,10:36:99:273,0,721 0/0:22,0:22:57.16:0,57,677 0/0:25,0:25:69.20:0,69,838 0/0:27,0:27:66.20:0,66,853 0/0:31,0:31:84.26:0,84,1040 0/0:37,0:37:99:0,99,1165 0/0:51,0:51:99:0,129,1576 0/0:35,0:35:99:0,102,1215 0/0:40,0:40:99:0,99,1257 0/0:34,0:34:96.28:0,96,1168 0/0:39,0:39:99:0,105,1262 0/0:39,0:39:99:0,99,1169 0/0:32,0:32:81.23:0,81,1002 0/0:26,0:26:72.18:0,72,823 0/0:32,0:32:87.27:0,87,1079 0/0:22,0:22:63.17:0,63,742 0/0:24,0:24:69.21:0,69,852 1 2341872 . T C 152.47 . AC=8;AF=0.095;AN=84;BaseQRankSum=-16.424;DP=1573;Dels=0.00;FS=362.357;HRun=2;HaplotypeScore=1.2235;InbreedingCoeff=-0.1364;MQ=58.36;MQ0=0;MQRankSum=-1.045;QD=0.58;ReadPosRankSum=-12.228 GT:AD:DP:GQ:PL 0/1:18,10:28:34.88:35,0,438 0/0:18,5:23:42.13:0,42,517 0/0:17,3:20:42.10:0,42,476 0/1:37,18:55:18.46:18,0,858 0/1:27,22:49:74.63:75,0,731 0/0:30,11:41:29.57:0,30,652 0/0:16,12:28:5.43:0,5,341 0/0:25,10:35:32.42:0,32,558 0/0:17,8:25:9.62:0,10,449 0/0:14,9:23:8.57:0,9,385 0/1:15,8:23:23.97:24,0,381 0/0:22,6:28:32.50:0,32,648 0/1:13,7:20:47.87:48,0,284 0/1:16,14:30:35.06:35,0,408 0/0:100,40:141:99:0,131,2802 0/0:16,6:22:39.12:0,39,472 0/0:13,3:16:14.41:0,14,366 0/0:20,11:31:38.40:0,38,652 0/0:45,17:62:36.97:0,37,1322 0/0:53,19:72:99:0,114,1355 0/0:50,15:66:45.99:0,46,1291 0/0:36,17:53:59.82:0,60,966 0/0:32,21:53:0.25:0,0,890 0/0:21,7:28:54.09:0,54,615 0/0:29,12:41:17.83:0,18,705 0/1:28,9:37:13.96:14,0,631 0/1:16,5:21:19.65:20,0,400 0/0:11,9:20:27.07:0,27,319 0/0:19,5:24:1.50:4,0,585 0/0:26,10:37:46.98:0,47,792 0/0:18,14:32:24.43:0,24,508 0/0:64,18:84:99:0,100,1518 0/0:21,8:29:36.22:0,36,610 0/0:16,9:25:41.60:0,42,458 0/0:12,8:21:21.07:0,21,262 0/0:15,8:23:17.43:0,17,457 0/0:51,20:71:24.68:0,25,1513 0/0:24,7:31:34.61:0,35,718 0/0:21,4:25:51.15:0,51,607 0/0:23,4:27:30.66:0,31,672 0/0:11,10:21:1.38:0,1,256 0/0:23,9:32:54.15:0,54,636 1 2343840 . G C 26.57 . AC=2;AF=0.048;AN=42;BaseQRankSum=2.281;DP=32;Dels=0.00;FS=2.905;HRun=0;HaplotypeScore=0.0939;InbreedingCoeff=0.1203;MQ=56.99;MQ0=0;MQRankSum=0.990;QD=13.29;ReadPosRankSum=1.764 GT:AD:DP:GQ:PL ./. ./. ./. 0/0:2,0:2:6.02:0,6,81 ./. 0/1:0,1:1:1.76:42,3,0 0/1:0,1:1:1.76:42,3,0 0/0:1,0:1:3.01:0,3,40 0/0:1,0:1:3.01:0,3,39 ./. 0/0:1,0:1:3.01:0,3,31 0/0:1,0:1:3.01:0,3,35 ./. ./. 0/0:2,0:2:6.02:0,6,72 0/0:2,0:2:6.02:0,6,73 ./. 0/0:1,0:1:3.01:0,3,37 ./. 0/0:3,0:3:9.03:0,9,112 ./. 0/0:1,0:1:3.01:0,3,35 ./. 0/0:1,0:1:3.01:0,3,41 0/0:1,0:1:3.01:0,3,41 0/0:1,0:1:3.01:0,3,42 ./. ./. ./. 0/0:3,0:3:3.01:0,3,30 ./. ./. ./. 0/0:2,0:2:6.02:0,6,70 ./. 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,77 0/0:2,0:2:3.01:0,3,45 ./. ./. 0/0:1,0:1:3:0,3,29 ./. 1 2418625 . C T 1630.52 . 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G C 47.08 . 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G C 1120.92 . 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G A 1552.51 . 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C T 67348.01 . AC=69;AF=0.821;AN=84;BaseQRankSum=-25.120;DP=2761;Dels=0.00;FS=0.171;HRun=0;HaplotypeScore=1.9283;InbreedingCoeff=0.2696;MQ=59.21;MQ0=0;MQRankSum=0.565;QD=26.91;ReadPosRankSum=-1.971 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1868,159,0 1/1:0,43:43:99:1395,120,0 1/1:0,46:46:99:1474,126,0 1/1:0,118:118:99:3801,328,0 1/1:0,89:89:99:2951,253,0 0/1:37,40:77:99:1117,0,1124 0/1:38,28:67:99:779,0,1067 0/0:76,0:77:99:0,199,2629 1/1:1,58:60:99:1819,123,0 0/1:28,15:44:99:411,0,768 1/1:1,39:40:89.63:1237,90,0 1/1:0,49:49:99:1610,138,0 1/1:0,36:36:99:1177,102,0 1/1:0,54:54:99:1739,147,0 0/1:86,85:172:99:2171,0,2352 0/1:36,25:61:99:612,0,1056 1/1:0,42:43:99:1330,117,0 0/1:15,29:44:99:845,0,434 0/1:54,43:97:99:1071,0,1595 1/1:0,98:98:99:3123,265,0 1/1:0,89:90:99:2892,244,0 1/1:0,73:74:99:2369,205,0 1/1:0,101:102:99:3315,286,0 1/1:0,56:56:99:1838,156,0 1/1:0,79:80:99:2666,226,0 1/1:0,48:48:99:1618,138,0 1/1:0,36:36:96.26:1131,96,0 1/1:1,56:57:99:1826,159,0 1/1:0,52:52:99:1689,147,0 1/1:0,52:52:99:1639,141,0 1/1:0,49:49:99:1591,135,0 1/1:0,101:101:99:3151,265,0 1/1:1,60:61:99:1819,153,0 1/1:0,44:44:99:1478,123,0 1/1:1,47:48:99:1510,103,0 1/1:0,55:55:99:1740,147,0 0/0:119,0:121:99:0,310,3911 0/1:34,24:58:99:586,0,1037 0/0:60,0:60:99:0,169,2101 1/1:0,54:54:99:1713,147,0 1/1:0,51:51:99:1621,138,0 0/1:13,22:35:99:628,0,374 1 3389757 . A G 496.30 . 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G A 368.82 . AC=7;AF=0.092;AN=76;BaseQRankSum=1.612;DP=183;Dels=0.00;FS=4.022;HRun=0;HaplotypeScore=0.1873;InbreedingCoeff=0.3070;MQ=56.89;MQ0=0;MQRankSum=0.680;QD=13.66;ReadPosRankSum=-0.397 GT:AD:DP:GQ:PL 0/0:4,0:4:12.03:0,12,130 0/0:5,0:5:15.04:0,15,161 0/0:5,0:5:12.03:0,12,137 0/0:10,0:10:30.09:0,30,360 0/0:5,0:5:15.05:0,15,187 0/1:5,1:6:21.28:21,0,151 0/0:2,0:2:6.02:0,6,72 0/1:3,1:4:21.40:21,0,88 0/0:2,0:2:6.02:0,6,68 0/0:3,0:3:9.02:0,9,91 0/0:4,0:4:12.03:0,12,142 ./. 0/0:2,0:2:6.02:0,6,67 0/0:10,0:10:24.07:0,24,280 0/0:11,0:11:33.09:0,33,377 0/0:4,0:4:12.04:0,12,146 ./. ./. 0/1:2,2:4:23.47:63,0,23 0/0:4,0:4:12.03:0,12,128 0/0:9,0:9:27.06:0,27,302 0/0:3,0:3:9.02:0,9,98 0/0:7,0:7:18.05:0,18,208 0/0:2,0:2:3.01:0,3,30 0/0:3,0:3:9.01:0,9,99 ./. 0/0:2,0:2:6.02:0,6,70 0/0:5,0:5:15.04:0,15,179 0/0:6,0:6:18.04:0,18,200 0/0:2,0:2:6.01:0,6,62 0/0:5,0:5:12.02:0,12,118 0/0:5,0:5:12.01:0,12,128 0/0:5,0:5:12.03:0,12,137 0/0:4,0:4:12.03:0,12,131 0/0:8,0:8:24.04:0,24,244 0/0:3,0:3:9.02:0,9,100 1/1:0,6:7:15.03:166,15,0 1/1:0,6:6:18.05:213,18,0 0/0:3,0:3:9.02:0,9,101 0/0:4,0:4:12.03:0,12,141 0/0:3,0:3:6.02:0,6,66 0/0:4,0:4:9.03:0,9,109 1 3413868 . C G 2650.77 . 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G A 82.54 . AC=1;AF=0.013;AN=80;BaseQRankSum=1.461;DP=261;Dels=0.00;FS=2.023;HRun=0;HaplotypeScore=0.1317;InbreedingCoeff=-0.0514;MQ=58.71;MQ0=0;MQRankSum=0.176;QD=11.79;ReadPosRankSum=0.265 GT:AD:DP:GQ:PL 0/0:4,0:4:9.02:0,9,102 ./. 0/1:3,4:7:75.34:126,0,75 0/0:13,0:13:39.11:0,39,455 0/0:10,0:10:24.07:0,24,293 0/0:9,0:9:21.06:0,21,250 0/0:4,0:4:12.04:0,12,149 0/0:3,0:3:9.03:0,9,107 0/0:6,0:6:18.04:0,18,193 0/0:3,0:3:9.02:0,9,102 0/0:6,0:6:15.04:0,15,181 0/0:3,0:3:9.02:0,9,100 0/0:9,0:9:27.07:0,27,299 0/0:9,0:9:24.07:0,24,287 0/0:17,0:17:45.13:0,45,536 0/0:6,0:6:15.04:0,15,162 0/0:5,0:5:15.03:0,15,157 0/0:4,0:4:12.03:0,12,134 0/0:4,0:4:12.03:0,12,132 0/0:11,0:11:27.07:0,27,316 0/0:12,0:12:33.08:0,33,356 0/0:6,0:6:15.03:0,15,155 0/0:10,0:10:30.07:0,30,342 0/0:5,0:5:12.02:0,12,125 0/0:5,0:5:9.03:0,9,116 0/0:3,0:3:9.02:0,9,96 0/0:3,0:3:6.02:0,6,75 0/0:5,0:5:12.02:0,12,127 0/0:4,0:4:12.04:0,12,150 0/0:6,0:6:15.05:0,15,193 0/0:7,0:7:18.05:0,18,200 0/0:6,1:7:0.15:14,0,139 0/0:7,0:7:18.04:0,18,190 0/0:2,0:2:6.01:0,6,62 0/0:8,0:8:15.04:0,15,182 0/0:5,0:5:15.03:0,15,162 0/0:10,0:10:24.07:0,24,267 0/0:9,0:9:24.07:0,24,281 0/0:5,0:5:15.04:0,15,171 0/0:2,0:2:6.02:0,6,74 0/0:7,0:7:21.05:0,21,232 ./. 1 3416227 . C T 196.38 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.729;DP=268;Dels=0.00;FS=1.485;HRun=0;HaplotypeScore=0.4581;InbreedingCoeff=-0.0467;MQ=57.84;MQ0=0;MQRankSum=-0.055;QD=14.03;ReadPosRankSum=0.449 GT:AD:DP:GQ:PL 0/0:6,0:6:15.02:0,15,151 0/0:4,0:4:12.03:0,12,141 0/0:6,0:6:12.03:0,12,133 0/0:13,0:13:39.08:0,39,429 0/0:11,0:11:27.08:0,27,320 0/0:8,0:8:21.05:0,21,248 0/0:5,0:5:12.04:0,12,151 0/0:7,0:7:15.03:0,15,157 0/0:7,0:7:15.04:0,15,170 0/0:6,0:6:15.04:0,15,169 0/0:6,0:6:18.04:0,18,190 0/0:2,0:2:6.02:0,6,66 0/0:7,0:7:18.04:0,18,188 0/0:3,0:3:9.01:0,9,92 0/0:20,0:20:48.13:0,48,535 0/0:5,0:5:15.03:0,15,162 0/0:4,0:4:12.02:0,12,117 0/0:7,0:7:18.05:0,18,206 0/0:5,0:5:9.03:0,9,103 0/0:9,0:9:24.04:0,24,262 0/0:8,0:8:18.05:0,18,198 0/0:8,0:8:24.06:0,24,269 0/0:17,0:17:33.05:0,33,370 0/0:2,0:2:6.01:0,6,62 0/0:7,0:7:18.06:0,18,235 0/0:4,0:4:9.03:0,9,107 0/0:7,0:7:18.04:0,18,193 0/0:7,0:7:18.04:0,18,195 0/0:1,0:1:3.01:0,3,35 0/0:2,0:2:3.01:0,3,34 0/0:3,0:3:9.02:0,9,96 0/1:6,8:14:99:242,0,121 0/0:5,0:5:12.01:0,12,115 0/0:5,0:5:12.03:0,12,134 0/0:4,0:4:12.01:0,12,125 0/0:5,0:5:12.03:0,12,132 0/0:6,0:6:18.03:0,18,183 0/0:8,0:8:21.05:0,21,237 0/0:3,0:3:9.01:0,9,93 0/0:6,0:6:15.04:0,15,168 0/0:4,0:4:12:0,12,115 0/0:1,0:1:3:0,3,27 1 3421897 . A G 2449.29 . 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G A 2798.70 . 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G T 43.07 . 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C T 858.70 . 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G A 5476.80 . 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C T 652.14 . 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T G 5518.22 . 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C G 172.51 . 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C T 4308.35 . AC=3;AF=0.036;AN=84;BaseQRankSum=8.503;DP=5385;DS;Dels=0.00;FS=0.311;HRun=0;HaplotypeScore=3.0750;InbreedingCoeff=-0.0370;MQ=59.46;MQ0=1;MQRankSum=0.624;QD=12.07;ReadPosRankSum=2.220 GT:AD:DP:GQ:PL 0/0:139,0:139:99:0,340,3904 0/0:96,0:97:99:0,238,2718 0/0:88,0:88:99:0,238,2633 0/0:189,0:189:99:0,496,5967 0/0:173,1:176:99:0,454,5482 0/1:70,62:136:99:1652,0,1735 0/1:71,50:125:99:1346,0,1969 0/0:138,0:139:99:0,346,4148 0/0:110,0:110:99:0,289,3241 0/0:96,0:98:99:0,250,2738 0/0:92,1:93:99:0,238,2659 0/0:119,0:120:99:0,307,3441 0/0:101,0:101:99:0,256,2851 0/0:112,1:114:99:0,268,3315 0/0:244,0:248:99:0,637,6982 0/1:47,48:96:99:1311,0,1108 0/0:117,0:118:99:0,301,3324 0/0:100,1:105:99:0,243,2913 0/0:167,1:173:99:0,421,4678 0/0:200,0:200:99:0,484,5565 0/0:162,0:168:99:0,412,4598 0/0:113,0:114:99:0,298,3332 0/0:199,0:200:99:0,527,6407 0/0:98,1:99:99:0,217,3044 0/0:121,0:121:99:0,325,3887 0/0:111,0:111:99:0,280,3409 0/0:89,0:91:99:0,229,2550 0/0:122,0:122:99:0,313,3462 0/0:101,0:105:99:0,280,3061 0/0:106,0:107:99:0,277,3085 0/0:104,0:104:99:0,262,2960 0/0:185,0:185:99:0,451,5194 0/0:129,0:131:99:0,349,3838 0/0:107,0:108:99:0,283,3139 0/0:97,0:97:99:0,256,2935 0/0:130,1:131:99:0,343,3847 0/0:159,0:161:99:0,421,4668 0/0:105,0:106:99:0,280,3045 0/0:118,0:121:99:0,304,3308 0/0:113,0:117:99:0,304,3348 0/0:105,0:105:99:0,274,3080 0/0:116,0:116:99:0,298,3393 1 3644715 . C T 7586.18 . AC=4;AF=0.048;AN=84;BaseQRankSum=4.111;DP=2640;Dels=0.00;FS=17.212;HRun=0;HaplotypeScore=2.2485;InbreedingCoeff=0.4750;MQ=59.03;MQ0=0;MQRankSum=2.784;QD=18.15;ReadPosRankSum=4.426 GT:AD:DP:GQ:PL 0/0:31,0:31:75.23:0,75,934 0/0:36,0:36:93.26:0,93,1112 0/0:33,0:33:93.24:0,93,1092 1/1:0,125:125:99:4042,316,0 0/1:61,52:113:99:1434,0,1822 0/0:134,0:134:99:0,310,4066 0/0:91,0:91:99:0,232,2953 0/0:103,0:103:99:0,259,3361 0/0:37,0:37:99:0,102,1206 0/0:28,0:28:72.18:0,72,855 0/0:42,0:43:99:0,114,1372 0/0:36,0:36:99:0,105,1270 0/0:34,0:35:81.23:0,81,998 0/0:45,0:45:99:0,114,1377 0/0:130,0:131:99:0,334,4085 0/0:38,0:38:99:0,105,1225 0/0:44,1:45:81.13:0,81,1306 0/0:46,0:46:99:0,120,1441 0/0:64,0:64:99:0,150,1791 0/0:87,0:87:99:0,220,2695 0/0:85,0:85:99:0,211,2572 0/0:48,0:48:99:0,120,1482 0/1:101,79:180:99:2110,0,2741 0/0:90,0:90:99:0,226,2917 0/0:121,0:121:99:0,304,3981 0/0:90,0:90:99:0,223,2913 0/0:29,0:29:75.18:0,75,857 0/0:42,0:42:99:0,117,1424 0/0:32,0:32:87.25:0,87,1050 0/0:27,0:27:72.20:0,72,854 0/0:32,0:32:90.26:0,90,1100 0/0:91,0:92:99:0,238,2874 0/0:66,0:66:99:0,162,1947 0/0:43,0:43:99:0,123,1462 0/0:37,0:37:99:0,102,1252 0/0:50,0:51:99:0,135,1640 0/0:93,0:93:99:0,241,2949 0/0:41,0:41:99:0,108,1299 0/0:36,0:36:99:0,105,1268 0/0:41,0:41:99:0,108,1304 0/0:28,0:28:78.21:0,78,895 0/0:35,0:35:96.27:0,96,1159 1 3644754 . T C 6498.68 . AC=4;AF=0.048;AN=84;BaseQRankSum=-2.035;DP=2818;Dels=0.00;FS=76.577;HRun=0;HaplotypeScore=1.9845;InbreedingCoeff=0.4750;MQ=58.94;MQ0=0;MQRankSum=1.588;QD=16.79;ReadPosRankSum=0.559 GT:AD:DP:GQ:PL 0/0:33,0:33:90.27:0,90,1088 0/0:40,0:40:99:0,102,1225 0/0:31,1:32:81.23:0,81,982 1/1:0,119:119:99:3544,295,0 0/1:54,49:105:99:1250,0,1596 0/0:115,0:115:99:0,307,3799 0/0:75,0:77:99:0,199,2428 0/0:105,0:105:99:0,268,3263 0/0:37,0:37:93.28:0,93,1116 0/0:40,0:40:99:0,114,1348 0/0:43,0:43:99:0,114,1376 0/0:46,0:46:99:0,120,1457 0/0:45,0:45:99:0,117,1386 0/0:42,0:43:99:0,111,1295 0/0:148,0:148:99:0,355,4259 0/0:43,0:43:99:0,123,1442 0/0:48,1:49:99:0,106,1551 0/0:50,0:50:99:0,132,1591 0/0:89,0:90:99:0,223,2663 0/0:115,0:115:99:0,298,3586 0/0:83,1:85:99:0,214,2588 0/0:67,0:67:99:0,172,2087 0/1:94,68:163:99:1705,0,2640 0/0:81,0:81:99:0,208,2595 0/0:116,0:116:99:0,280,3524 0/0:89,0:89:99:0,238,2920 0/0:28,0:29:78.20:0,78,913 0/0:58,0:59:99:0,156,1876 0/0:28,0:28:75.22:0,75,889 0/0:47,0:47:99:0,123,1478 0/0:36,0:36:96.28:0,96,1131 0/0:102,0:102:99:0,247,3021 0/0:64,1:65:99:0,165,1939 0/0:47,1:48:99:0,126,1519 0/0:50,0:50:99:0,132,1599 0/0:54,1:55:99:0,144,1719 0/0:101,0:103:99:0,259,3111 0/0:40,0:40:99:0,105,1251 0/0:55,0:55:99:0,147,1795 0/0:42,0:42:99:0,111,1359 0/0:37,0:37:96.26:0,96,1136 0/0:46,0:46:99:0,120,1436 1 3686415 . C T 4014.31 . AC=4;AF=0.048;AN=84;BaseQRankSum=10.013;DP=3647;DS;Dels=0.00;FS=0.666;HRun=0;HaplotypeScore=1.7260;InbreedingCoeff=-0.0500;MQ=59.25;MQ0=0;MQRankSum=3.873;QD=14.29;ReadPosRankSum=-0.047 GT:AD:DP:GQ:PL 0/0:88,0:88:99:0,238,2686 0/0:68,0:68:99:0,180,2027 0/0:70,0:70:99:0,183,2104 0/0:109,0:109:99:0,280,3532 0/0:120,0:120:99:0,328,4049 0/1:47,48:95:99:1419,0,1324 0/1:39,28:67:99:795,0,1045 0/0:82,0:82:99:0,211,2637 0/0:75,0:75:99:0,198,2291 0/0:69,0:69:99:0,190,2176 0/0:73,0:73:99:0,202,2260 0/0:60,0:60:99:0,165,1849 0/0:84,1:85:99:0,188,2453 0/1:30,36:66:99:1004,0,790 0/0:215,0:215:99:0,544,6363 0/0:57,0:57:99:0,165,1835 0/0:77,0:77:99:0,202,2301 0/0:70,0:70:99:0,199,2245 0/0:97,0:97:99:0,259,2949 0/0:137,1:138:99:0,361,4181 0/0:112,0:112:99:0,289,3281 0/0:95,0:95:99:0,247,2822 0/0:121,0:121:99:0,322,3992 0/0:81,0:81:99:0,211,2660 0/0:82,0:82:99:0,220,2786 0/0:74,0:74:99:0,193,2362 0/0:69,0:69:99:0,186,2140 0/0:78,0:78:99:0,226,2554 0/0:74,0:75:99:0,189,2223 0/0:100,0:100:99:0,271,3068 0/1:25,28:53:99:797,0,666 0/0:104,0:104:99:0,262,3075 0/0:90,0:90:99:0,247,2775 0/0:65,0:65:99:0,177,2002 0/0:85,0:85:99:0,232,2672 0/0:93,0:93:99:0,262,2955 0/0:97,0:97:99:0,259,2890 0/0:92,0:92:99:0,262,2921 0/0:91,0:91:99:0,256,2873 0/0:71,0:71:99:0,198,2214 0/0:65,0:65:99:0,183,2050 0/0:73,0:73:99:0,196,2211 1 3761479 . C T 42953.97 . AC=41;AF=0.488;AN=84;BaseQRankSum=1.000;DP=3015;Dels=0.00;FS=4.669;HRun=0;HaplotypeScore=1.2257;InbreedingCoeff=0.1900;MQ=59.32;MQ0=0;MQRankSum=2.254;QD=20.03;ReadPosRankSum=1.667 GT:AD:DP:GQ:PL 0/1:36,25:61:99:626,0,999 0/0:57,0:57:99:0,153,1864 0/0:65,0:65:99:0,178,2139 1/1:0,142:142:99:4428,355,0 1/1:0,99:99:99:3230,256,0 0/0:87,0:87:99:0,226,2946 0/1:33,38:71:99:1083,0,904 0/0:94,0:94:99:0,232,3072 0/1:40,20:61:99:528,0,1154 1/1:0,46:46:99:1597,135,0 0/0:68,0:68:99:0,174,2100 0/0:66,0:66:99:0,178,2105 0/1:22,30:52:99:858,0,543 0/0:45,0:45:99:0,120,1416 0/1:118,101:219:99:2534,0,3025 0/1:24,16:40:99:446,0,531 1/1:0,64:64:99:2082,169,0 1/1:0,46:46:99:1565,129,0 0/1:33,35:68:99:898,0,892 0/1:48,50:99:99:1248,0,1220 0/0:78,0:78:99:0,192,2276 0/1:32,31:63:99:747,0,893 0/1:74,57:131:99:1438,0,2125 1/1:0,84:84:99:2652,211,0 1/1:0,79:79:99:2442,193,0 0/1:46,40:86:99:1053,0,1233 1/1:0,37:37:99:1206,99,0 1/1:0,61:62:99:2076,174,0 1/1:0,49:49:99:1651,135,0 0/0:49,0:49:99:0,135,1585 0/0:48,0:48:99:0,132,1597 0/0:96,0:96:99:0,229,2882 0/1:28,31:59:99:877,0,692 0/1:42,28:70:99:745,0,1126 1/1:0,51:51:99:1579,126,0 0/1:36,38:74:99:1044,0,962 0/1:35,39:74:99:1070,0,895 0/0:62,0:62:99:0,171,2021 1/1:0,48:48:99:1639,135,0 0/1:26,27:53:99:777,0,701 0/0:55,0:55:99:0,141,1700 0/1:29,28:57:99:831,0,810 1 3800242 . A G 79829.95 . AC=37;AF=0.440;AN=84;BaseQRankSum=-4.910;DP=6937;DS;Dels=0.00;FS=0.366;HRun=0;HaplotypeScore=3.0752;InbreedingCoeff=0.0822;MQ=59.49;MQ0=0;MQRankSum=2.009;QD=18.30;ReadPosRankSum=-1.056 GT:AD:DP:GQ:PL 0/0:182,0:182:99:0,497,6127 0/0:132,0:132:99:0,370,4514 0/0:165,0:165:99:0,454,5559 0/0:204,0:204:99:0,557,6892 0/0:185,0:185:99:0,521,6493 0/1:93,81:174:99:2336,0,2610 0/0:144,0:144:99:0,379,4784 1/1:0,144:144:99:5118,400,0 0/1:72,76:148:99:2041,0,1997 0/1:61,66:127:99:1917,0,1605 1/1:0,126:126:99:4127,346,0 0/0:188,1:189:99:0,493,6398 0/0:136,0:136:99:0,376,4600 0/1:96,70:166:99:1911,0,2714 0/0:243,0:243:99:0,686,8217 0/1:80,38:119:99:892,0,2464 0/1:86,67:153:99:1801,0,2491 1/1:0,131:131:99:4177,349,0 0/1:112,107:219:99:2743,0,3131 0/1:123,108:232:99:2837,0,3398 0/1:113,97:212:99:2482,0,3344 1/1:0,143:143:99:4561,382,0 0/0:222,0:223:99:0,620,7683 0/1:71,51:122:99:1354,0,2050 1/1:0,154:154:99:5428,421,0 0/0:153,2:155:99:0,339,5068 0/1:62,61:123:99:1670,0,1746 1/1:1,124:125:99:3902,305,0 0/1:88,54:143:99:1394,0,2643 0/0:159,1:160:99:0,407,5332 0/1:91,71:162:99:1853,0,2776 0/0:231,0:231:99:0,617,7694 0/0:225,0:225:99:0,602,7428 1/1:0,156:156:99:5251,436,0 1/1:2,131:133:99:4215,323,0 0/1:100,96:196:99:2680,0,2891 0/1:123,88:212:99:2228,0,3565 1/1:0,149:149:99:4915,412,0 0/1:59,63:122:99:1829,0,1700 0/1:83,68:151:99:1877,0,2322 0/1:80,77:157:99:2043,0,2311 0/1:80,84:164:99:2250,0,2232 1 5924499 . C T 45.96 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.123;DP=412;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5747;InbreedingCoeff=-0.0326;MQ=58.74;MQ0=0;MQRankSum=0.432;QD=3.54;ReadPosRankSum=-0.103 GT:AD:DP:GQ:PL 0/0:9,0:9:27.06:0,27,285 0/0:9,0:9:27.07:0,27,288 0/0:9,0:9:27.07:0,27,293 0/0:23,0:23:60.16:0,60,701 0/0:16,0:16:48.13:0,48,564 0/0:13,0:13:36.11:0,36,431 0/0:7,0:7:18.06:0,18,225 0/0:9,0:9:24.07:0,24,290 0/0:6,0:6:15.02:0,15,155 0/0:4,0:4:9:0,9,84 0/0:7,0:7:21.05:0,21,227 0/0:8,0:8:18.05:0,18,215 0/0:9,0:9:24.05:0,24,260 0/0:8,0:8:24.06:0,24,267 0/0:17,0:17:48.10:0,48,514 0/0:10,0:10:30.08:0,30,330 0/0:6,0:6:18.04:0,18,190 0/0:11,0:11:33.08:0,33,360 0/0:12,0:12:30.06:0,30,313 0/0:8,0:8:24.07:0,24,272 0/0:12,0:12:30.08:0,30,327 0/0:9,0:9:27.06:0,27,287 0/0:20,0:20:57.15:0,57,662 0/0:7,0:7:21.06:0,21,243 0/0:13,0:13:39.12:0,39,471 0/0:13,0:13:36.09:0,36,417 0/0:8,0:8:24.06:0,24,267 0/0:5,0:5:15.03:0,15,157 0/0:5,0:5:15.04:0,15,175 0/0:6,0:6:18.05:0,18,194 0/0:13,0:13:39.09:0,39,412 0/0:14,0:15:42.11:0,42,462 0/0:13,0:13:39.10:0,39,416 0/1:6,2:8:54.54:55,0,135 0/1:3,2:5:53.65:54,0,74 0/0:9,0:9:21.06:0,21,231 0/0:18,0:18:48.12:0,48,516 0/0:2,0:2:6.02:0,6,64 0/0:3,0:3:9.01:0,9,91 0/0:11,0:11:33.07:0,33,350 0/0:8,0:8:24.02:0,24,237 0/0:8,0:8:18.04:0,18,192 1 5924518 . G A 30.29 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.197;DP=403;Dels=0.00;FS=15.107;HRun=0;HaplotypeScore=0.2172;InbreedingCoeff=-0.0202;MQ=58.49;MQ0=0;MQRankSum=0.814;QD=5.05;ReadPosRankSum=0.459 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,187 0/0:8,0:8:24.07:0,24,293 0/0:12,0:12:36.11:0,36,443 0/0:18,1:19:26.59:0,27,670 0/0:10,0:10:30.09:0,30,383 0/0:10,0:10:30.09:0,30,374 0/0:8,0:8:21.07:0,21,287 0/0:9,0:9:24.08:0,24,316 0/0:9,0:9:27.06:0,27,308 0/0:2,0:2:6.02:0,6,73 0/0:10,0:10:30.09:0,30,354 0/0:12,0:12:36.10:0,36,418 0/0:8,0:8:24.07:0,24,285 0/0:11,0:11:33.08:0,33,387 0/0:17,0:17:48.14:0,48,574 0/0:8,0:8:24.07:0,24,297 0/0:4,0:4:12.04:0,12,150 0/0:8,0:8:24.07:0,24,283 0/0:14,0:14:42.08:0,42,478 0/0:11,0:11:30.02:0,30,307 0/0:13,0:13:39.11:0,39,466 0/0:8,0:8:24.08:0,24,299 0/0:22,0:22:63.20:0,63,805 0/0:8,0:8:21.07:0,21,274 0/0:14,0:14:42.14:0,42,560 0/0:8,0:8:15.05:0,15,202 0/0:7,0:7:21.05:0,21,236 0/0:8,0:8:24.07:0,24,284 0/1:3,3:6:76.42:76,0,91 0/0:7,0:7:21.06:0,21,254 0/0:11,0:11:33.10:0,33,410 0/0:13,0:13:39.10:0,39,472 0/0:9,0:9:21.06:0,21,258 0/0:4,0:4:9.03:0,9,113 0/0:5,0:5:15.05:0,15,184 0/0:10,0:10:30.09:0,30,359 0/0:21,0:21:57.14:0,57,666 0/0:5,0:5:15.04:0,15,181 0/0:4,0:4:12.04:0,12,144 0/0:10,0:10:27.08:0,27,324 0/0:5,0:5:15.04:0,15,175 0/0:10,0:10:27.08:0,27,318 1 5925295 . A C 159.26 . AC=11;AF=0.138;AN=80;BaseQRankSum=-7.228;DP=348;Dels=0.00;FS=23.349;HRun=2;HaplotypeScore=0.1282;InbreedingCoeff=-0.2044;MQ=57.45;MQ0=0;MQRankSum=-1.078;QD=1.52;ReadPosRankSum=0.622 GT:AD:DP:GQ:PL 0/0:7,5:12:15.03:0,15,160 0/0:2,0:2:6.01:0,6,63 0/0:4,3:7:9.02:0,9,96 0/1:6,7:13:45.04:45,0,115 0/0:7,2:9:21.05:0,21,227 0/1:2,4:6:24.58:25,0,29 0/0:1,3:4:3.01:0,3,39 0/0:1,3:4:3.01:0,3,36 0/0:2,1:3:6.02:0,6,69 0/0:4,2:6:12.01:0,12,125 ./. 0/0:6,1:7:15.04:0,15,174 0/0:4,4:8:12.03:0,12,133 0/1:1,5:6:27.42:27,0,30 0/0:8,3:11:24.05:0,24,268 0/0:5,2:7:15.04:0,15,174 0/0:6,3:9:18.04:0,18,192 0/1:4,3:7:14.58:15,0,125 0/1:4,6:10:8.65:9,0,125 0/1:8,7:15:10.31:10,0,200 0/0:4,2:6:12.03:0,12,136 0/0:7,2:9:21.06:0,21,248 0/0:5,2:7:15.04:0,15,174 0/1:4,8:12:13.60:14,0,131 0/0:7,4:11:18.05:0,18,203 0/0:2,1:3:6.02:0,6,72 0/0:1,3:4:3.01:0,3,34 0/0:10,1:11:21.06:0,21,245 0/0:3,4:8:6.02:0,6,70 0/0:2,4:6:3:0,3,29 0/1:4,7:11:16.54:17,0,99 0/0:7,8:15:21.06:0,21,235 0/0:8,10:18:24.05:0,24,256 0/0:3,4:7:6.02:0,6,68 0/1:3,1:4:18.56:19,0,93 0/0:6,4:10:12.03:0,12,135 0/1:4,7:11:68.63:69,0,92 0/0:6,3:9:15.02:0,15,158 0/0:9,2:11:21.05:0,21,235 0/0:6,4:10:18.05:0,18,206 ./. 0/1:6,4:10:39.16:39,0,158 1 5927169 . G A 1935.52 . AC=7;AF=0.083;AN=84;BaseQRankSum=-1.499;DP=802;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.6204;InbreedingCoeff=-0.0910;MQ=59.04;MQ0=0;MQRankSum=-0.023;QD=13.54;ReadPosRankSum=-0.876 GT:AD:DP:GQ:PL 0/0:13,0:13:36.11:0,36,459 0/0:13,0:13:39.12:0,39,478 0/0:22,0:22:60.19:0,60,766 0/0:26,0:26:72.23:0,72,950 0/0:23,0:23:66.21:0,66,869 0/0:11,0:11:33.09:0,33,400 0/0:18,0:18:51.16:0,51,674 0/0:16,0:16:45.14:0,45,586 0/0:11,0:11:33.10:0,33,399 0/1:8,13:21:99:318,0,247 0/0:13,0:13:33.10:0,33,411 0/0:16,0:16:45.13:0,45,545 0/0:10,0:10:30.09:0,30,355 0/0:21,0:21:57.18:0,57,724 0/0:53,0:53:99:0,141,1738 0/0:17,0:17:51.15:0,51,611 0/0:19,0:19:45.13:0,45,555 0/0:15,0:15:39.11:0,39,462 0/0:26,0:26:66.19:0,66,799 0/0:28,0:28:75.23:0,75,937 0/1:10,14:24:99:404,0,219 0/0:21,0:21:63.19:0,63,768 0/0:16,0:16:45.15:0,45,601 0/0:14,0:14:36.11:0,36,482 0/0:20,0:20:54.17:0,54,709 0/0:19,0:19:51.16:0,51,649 0/1:7,3:10:81.53:82,0,222 0/1:9,12:21:99:356,0,261 0/0:17,0:17:45.12:0,45,539 0/0:19,0:19:54.17:0,54,671 0/0:11,0:11:30.08:0,30,348 0/1:15,13:28:99:361,0,363 0/0:30,0:30:75.21:0,75,917 0/0:21,0:21:60.17:0,60,711 0/0:12,0:12:33.10:0,33,405 0/0:18,0:18:45.14:0,45,566 0/1:11,13:24:99:322,0,264 0/1:6,9:15:99:208,0,160 0/0:19,0:19:54.17:0,54,676 0/0:19,0:19:57.18:0,57,699 0/0:15,0:15:42.11:0,42,501 0/0:17,0:17:48.14:0,48,577 1 5951013 . C T 1099.86 . 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C T 37.24 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.027;DP=666;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3484;InbreedingCoeff=-0.0130;MQ=59.09;MQ0=0;MQRankSum=0.569;QD=4.65;ReadPosRankSum=-0.425 GT:AD:DP:GQ:PL 0/0:19,0:19:51.15:0,51,608 0/0:11,0:11:30.09:0,30,359 0/0:12,0:12:30.08:0,30,334 0/0:25,0:25:66.20:0,66,816 0/0:23,1:24:29.21:0,29,785 0/0:16,0:16:42.13:0,42,545 0/0:12,0:12:30.10:0,30,390 0/0:12,0:12:33.11:0,33,428 0/0:13,0:13:36.09:0,36,403 0/0:11,0:11:30.08:0,30,340 0/0:9,0:9:27.07:0,27,301 0/0:10,0:10:27.07:0,27,302 0/0:7,0:7:15.05:0,15,188 0/0:16,0:16:42.10:0,42,482 0/0:44,0:44:99:0,117,1418 0/0:12,0:12:33.10:0,33,393 0/0:11,0:11:30.08:0,30,362 0/0:14,0:14:39.10:0,39,449 0/0:24,0:24:66.17:0,66,747 0/0:43,0:43:99:0,123,1438 0/0:22,0:22:57.16:0,57,689 0/0:21,0:21:60.13:0,60,673 0/0:22,0:22:57.16:0,57,721 0/0:9,0:9:24.08:0,24,308 0/0:11,0:11:30.09:0,30,378 0/0:7,0:7:21.07:0,21,265 0/0:13,0:13:36.07:0,36,406 0/0:11,0:11:33.09:0,33,379 0/0:19,0:19:51.13:0,51,606 0/0:16,0:16:42.09:0,42,454 0/0:12,0:12:36.11:0,36,436 0/0:32,0:32:84.21:0,84,990 0/0:8,0:8:21.06:0,21,232 0/0:14,0:14:39.09:0,39,447 0/1:5,3:8:83.44:83,0,131 0/0:7,0:7:21.06:0,21,246 0/0:30,0:30:81.23:0,81,970 0/0:9,0:9:27.08:0,27,314 0/0:16,0:16:42.10:0,42,482 0/0:14,0:14:39.11:0,39,458 0/0:10,0:10:30.08:0,30,336 0/0:10,0:10:27.05:0,27,306 1 5965381 . C T 26635.58 . AC=15;AF=0.179;AN=84;BaseQRankSum=-30.640;DP=5449;DS;Dels=0.00;FS=8.410;HRun=1;HaplotypeScore=2.1822;InbreedingCoeff=-0.0551;MQ=59.48;MQ0=0;MQRankSum=0.126;QD=14.00;ReadPosRankSum=1.013 GT:AD:DP:GQ:PL 0/1:54,60:114:99:1584,0,1547 0/1:35,44:79:99:1225,0,1055 0/0:98,0:98:99:0,268,3458 0/0:176,0:176:99:0,451,6170 0/0:151,0:151:99:0,382,5290 0/0:165,1:166:99:0,424,5809 0/0:144,1:145:99:0,346,5146 0/0:173,0:173:99:0,433,5974 0/0:98,0:98:99:0,259,3348 0/0:141,0:141:99:0,370,4778 0/0:88,0:88:99:0,235,3013 0/0:111,0:111:99:0,292,3745 0/0:110,0:110:99:0,286,3706 0/0:100,0:100:99:0,268,3472 0/1:145,105:250:99:2763,0,4325 0/0:98,0:98:99:0,268,3411 0/1:57,50:107:99:1465,0,1715 0/0:103,0:103:99:0,283,3654 0/0:211,0:211:99:0,554,7138 0/0:203,0:203:99:0,530,6822 0/1:104,82:186:99:2160,0,2984 1/1:0,113:113:99:3780,313,0 0/0:184,0:184:99:0,448,6203 0/1:73,79:152:99:2106,0,2188 0/0:154,0:154:99:0,382,5276 0/1:67,59:126:99:1555,0,1994 0/0:84,0:84:99:0,241,3072 0/0:122,0:122:99:0,331,4222 0/0:100,0:100:99:0,259,3362 0/1:53,59:112:99:1701,0,1577 0/0:92,0:92:99:0,256,3294 0/1:92,69:161:99:1872,0,2639 0/1:76,53:130:99:1404,0,2171 0/0:108,0:108:99:0,286,3690 0/0:102,0:102:99:0,259,3354 0/0:116,1:117:99:0,295,4123 0/1:92,90:182:99:2438,0,2576 0/1:41,41:82:99:1185,0,1148 0/1:57,51:108:99:1398,0,1753 0/0:113,0:113:99:0,316,4037 0/0:101,0:101:99:0,271,3448 0/0:97,0:97:99:0,274,3524 1 5965427 . G A 1633.54 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.452;DP=4692;DS;Dels=0.00;FS=1.074;HRun=0;HaplotypeScore=2.3266;InbreedingCoeff=-0.0120;MQ=59.52;MQ0=0;MQRankSum=-0.400;QD=15.56;ReadPosRankSum=1.054 GT:AD:DP:GQ:PL 0/0:101,0:101:99:0,280,3280 0/0:85,0:85:99:0,229,2707 0/0:89,0:89:99:0,247,2873 0/0:153,0:153:99:0,424,5358 0/0:149,0:149:99:0,388,5087 0/0:135,0:135:99:0,355,4540 0/0:127,1:128:99:0,334,4373 0/0:123,0:123:99:0,328,4227 0/0:74,0:74:99:0,187,2256 0/0:91,0:92:99:0,250,2882 0/0:79,0:79:99:0,223,2576 0/0:101,0:101:99:0,280,3300 0/0:88,0:89:99:0,241,2867 0/0:96,0:96:99:0,274,3222 0/0:229,0:229:99:0,584,6933 0/0:76,0:76:99:0,208,2399 0/0:94,0:94:99:0,259,3069 0/0:82,0:82:99:0,229,2659 0/0:168,0:168:99:0,424,4955 0/0:154,0:155:99:0,403,4890 0/0:161,0:162:99:0,424,4947 0/0:103,0:103:99:0,283,3248 0/0:177,0:177:99:0,445,5839 0/0:120,0:120:99:0,316,4116 0/0:129,0:130:99:0,349,4533 0/0:100,0:100:99:0,268,3408 0/0:66,0:66:99:0,181,2161 0/0:100,0:100:99:0,280,3280 0/0:103,0:103:99:0,280,3267 0/0:123,0:123:99:0,343,4048 0/0:93,0:93:99:0,271,3116 0/0:141,0:141:99:0,361,4344 0/0:125,0:126:99:0,331,3940 0/0:91,0:91:99:0,259,3056 0/0:78,0:78:99:0,214,2548 0/0:89,0:89:99:0,244,2902 0/0:141,0:144:99:0,379,4460 0/0:90,1:91:99:0,236,2898 0/0:85,0:85:99:0,250,2886 0/0:85,0:85:99:0,220,2652 0/0:81,0:81:99:0,223,2638 0/1:45,60:105:99:1680,0,1191 1 5965455 . C T 2558.83 . AC=2;AF=0.024;AN=84;BaseQRankSum=7.575;DP=3713;DS;Dels=0.00;FS=0.968;HRun=1;HaplotypeScore=2.4262;InbreedingCoeff=-0.0244;MQ=59.53;MQ0=0;MQRankSum=1.208;QD=13.12;ReadPosRankSum=0.758 GT:AD:DP:GQ:PL 0/0:71,0:71:99:0,205,2309 0/0:79,0:79:99:0,223,2506 0/0:78,0:78:99:0,214,2392 0/0:114,0:115:99:0,322,3855 0/0:126,0:126:99:0,337,4176 0/0:111,0:111:99:0,292,3488 0/0:91,0:91:99:0,244,3011 0/0:92,0:92:99:0,256,3102 0/0:62,0:62:99:0,165,1846 0/0:71,0:71:99:0,198,2212 0/0:56,0:56:99:0,162,1799 0/0:78,1:79:99:0,197,2482 0/0:59,0:59:99:0,165,1841 0/0:72,0:72:99:0,208,2302 0/0:220,0:220:99:0,572,6551 0/0:62,0:62:99:0,174,1954 0/0:77,0:77:99:0,223,2476 0/0:64,0:64:99:0,183,2023 0/0:132,0:133:99:0,349,3994 0/0:134,0:134:99:0,382,4297 0/0:127,0:127:99:0,334,3770 0/0:88,0:88:99:0,253,2791 0/0:132,0:132:99:0,364,4450 0/0:91,0:91:99:0,244,3004 0/0:89,0:89:99:0,250,3109 0/0:76,0:76:99:0,214,2514 0/0:52,0:52:99:0,153,1678 0/0:78,0:78:99:0,226,2515 0/0:83,0:83:99:0,229,2644 0/0:88,0:88:99:0,232,2595 0/0:63,0:63:99:0,183,2064 0/0:110,0:110:99:0,304,3400 0/0:102,0:102:99:0,277,3116 0/0:72,0:72:99:0,202,2246 0/0:70,0:70:99:0,192,2129 0/0:65,0:65:99:0,183,1991 0/1:50,67:120:99:1904,0,1205 0/1:47,27:75:99:717,0,1232 0/0:68,0:68:99:0,187,2141 0/0:67,0:67:99:0,186,2080 0/0:65,0:65:99:0,177,2031 0/0:80,0:80:99:0,217,2448 1 6046264 . G A 1584.37 . 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T C 4119.69 . 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A G 21226.76 . 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G A 651.63 . AC=4;AF=0.048;AN=84;BaseQRankSum=3.196;DP=413;Dels=0.00;FS=4.431;HRun=1;HaplotypeScore=0.2257;InbreedingCoeff=-0.0538;MQ=57.52;MQ0=0;MQRankSum=2.280;QD=14.17;ReadPosRankSum=0.337 GT:AD:DP:GQ:PL 0/0:7,0:7:15.03:0,15,160 0/0:6,0:6:18.05:0,18,203 0/0:5,0:5:15.04:0,15,178 0/0:16,0:16:42.12:0,42,482 0/0:10,0:10:24.07:0,24,294 0/0:13,1:14:33.09:0,33,389 0/0:8,0:8:24.07:0,24,294 0/0:6,0:6:18.06:0,18,220 0/1:4,3:7:88.18:88,0,112 0/1:4,5:9:99:156,0,111 0/0:6,0:6:18.04:0,18,193 0/0:6,0:6:15.04:0,15,174 0/0:8,0:8:24.06:0,24,262 0/0:12,0:12:36.10:0,36,404 0/0:20,0:20:57.15:0,57,653 0/0:9,0:9:27.08:0,27,312 0/0:8,0:8:21.06:0,21,240 0/0:7,0:7:18.05:0,18,210 0/1:5,10:15:96.57:262,0,97 0/1:5,10:15:99:232,0,114 0/0:14,0:14:42.09:0,42,469 0/0:11,0:11:33.08:0,33,356 0/0:8,0:8:24.07:0,24,283 0/0:8,0:8:18.04:0,18,206 0/0:15,0:15:39.12:0,39,473 0/0:6,0:6:15.04:0,15,175 0/0:6,0:6:18.02:0,18,192 0/0:10,0:10:30.08:0,30,330 0/0:9,0:9:27.07:0,27,308 0/0:11,0:11:30.08:0,30,338 0/0:13,0:13:39.10:0,39,433 0/0:16,0:16:48.13:0,48,538 0/0:9,0:9:24.05:0,24,272 0/0:9,0:9:24.06:0,24,264 0/0:9,0:9:27.06:0,27,282 0/0:8,0:8:24.06:0,24,267 0/0:17,0:17:45.12:0,45,507 0/0:10,0:10:30.08:0,30,334 0/0:7,0:7:21.05:0,21,233 0/0:8,0:8:24.03:0,24,238 0/0:6,0:6:18.05:0,18,209 0/0:9,0:9:27.08:0,27,310 1 6202245 . G A 22917.85 . AC=12;AF=0.143;AN=84;BaseQRankSum=7.812;DP=7041;DS;Dels=0.00;FS=1.679;HRun=0;HaplotypeScore=4.7655;InbreedingCoeff=0.0278;MQ=59.28;MQ0=0;MQRankSum=-1.289;QD=13.56;ReadPosRankSum=-1.690 GT:AD:DP:GQ:PL 0/0:150,1:151:99:0,379,4676 0/0:135,0:135:99:0,364,4265 0/0:165,0:165:99:0,436,5109 0/0:200,0:200:99:0,545,6870 0/0:193,0:193:99:0,515,6448 0/0:226,0:226:99:0,581,7333 0/0:216,0:216:99:0,575,7255 0/0:207,2:210:99:0,488,6690 0/1:78,60:139:99:1476,0,2199 0/0:126,1:127:99:0,291,3746 0/1:59,73:132:99:2077,0,1558 0/0:151,0:151:99:0,412,4724 0/0:119,0:119:99:0,313,3688 0/0:150,0:150:99:0,406,4763 0/0:249,1:250:99:0,677,7666 0/0:152,0:152:99:0,421,4893 0/0:132,0:132:99:0,346,4058 0/1:67,52:120:99:1415,0,1781 0/1:128,98:229:99:2635,0,3161 0/0:228,0:228:99:0,593,6952 0/0:215,0:215:99:0,541,6318 0/0:164,0:164:99:0,448,5216 0/0:226,1:227:99:0,578,7682 0/1:92,84:177:99:2228,0,2630 0/1:128,89:218:99:2316,0,3672 0/0:187,0:189:99:0,484,6093 0/0:120,0:121:99:0,313,3672 0/0:164,0:164:99:0,433,4969 0/0:125,0:125:99:0,349,4005 0/1:81,72:153:99:1989,0,1977 1/1:1,107:108:99:3419,251,0 0/0:211,0:211:99:0,538,6315 0/0:158,1:159:99:0,421,4894 0/1:73,61:134:99:1629,0,2041 0/1:85,56:144:99:1557,0,2203 0/0:154,0:154:99:0,409,4803 0/0:219,1:222:99:0,538,6166 0/1:57,79:136:99:2177,0,1337 0/0:146,0:146:99:0,391,4559 0/0:148,1:149:99:0,364,4566 0/0:141,0:141:99:0,367,4306 0/0:158,0:158:99:0,418,4937 1 6211183 . G A 14963.71 . AC=32;AF=0.381;AN=84;BaseQRankSum=-4.184;DP=1491;Dels=0.00;FS=3.193;HRun=2;HaplotypeScore=1.3176;InbreedingCoeff=0.0913;MQ=59.07;MQ0=0;MQRankSum=-0.265;QD=17.67;ReadPosRankSum=0.376 GT:AD:DP:GQ:PL 0/0:30,0:31:90.26:0,90,1068 0/0:23,0:23:69.18:0,69,792 0/0:25,0:25:69.19:0,69,834 0/0:56,0:57:99:0,147,1868 0/0:59,0:60:99:0,162,1995 0/1:27,20:47:99:582,0,692 0/1:22,16:38:99:417,0,688 0/0:39,0:39:99:0,105,1297 0/1:7,8:15:99:209,0,156 0/1:16,21:37:99:610,0,398 0/1:11,5:17:69.19:69,0,322 0/0:28,0:28:72.20:0,72,866 0/0:30,0:30:84.21:0,84,976 0/0:24,0:24:54.14:0,54,643 0/1:48,41:90:99:1042,0,1382 0/1:14,8:22:99:185,0,390 0/0:34,0:34:87.25:0,87,1040 1/1:0,17:17:45.11:523,45,0 0/1:27,21:50:99:552,0,792 0/0:59,0:59:99:0,153,1841 0/1:22,19:41:99:530,0,629 0/1:14,14:28:99:410,0,358 0/0:80,0:81:99:0,223,2839 1/1:0,30:30:84.24:1013,84,0 1/1:0,41:41:99:1373,114,0 1/1:0,33:33:93.29:1141,93,0 0/0:21,0:21:57.13:0,57,681 0/1:8,12:20:99:356,0,165 0/0:26,0:26:66.18:0,66,779 1/1:0,26:26:69.21:843,69,0 1/1:0,25:25:72.20:854,72,0 1/1:0,41:42:99:1378,114,0 0/1:19,17:36:99:379,0,528 0/1:19,15:34:99:374,0,445 0/1:7,18:25:99:520,0,152 0/0:31,0:31:75.20:0,75,903 0/0:52,0:52:99:0,129,1571 0/0:23,0:23:54.15:0,54,655 0/1:15,18:35:99:469,0,426 0/1:22,20:42:99:535,0,613 0/1:22,13:35:99:339,0,610 0/1:12,9:21:99:260,0,289 1 6269340 . A G 77.73 . AC=4;AF=0.051;AN=78;BaseQRankSum=3.598;DP=132;Dels=0.00;FS=4.911;HRun=0;HaplotypeScore=0.0726;InbreedingCoeff=-0.1356;MQ=58.00;MQ0=0;MQRankSum=0.811;QD=5.55;ReadPosRankSum=0.511 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,70 0/0:2,0:2:6.02:0,6,70 0/1:2,1:3:33.29:33,0,39 0/0:3,0:3:6.02:0,6,76 0/0:1,0:1:3.01:0,3,30 0/0:5,0:5:15.05:0,15,183 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.03:0,9,108 0/0:5,0:5:15.04:0,15,171 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.03:0,9,107 0/0:3,0:3:9.03:0,9,107 0/0:4,0:4:9.03:0,9,112 0/0:2,0:2:6.02:0,6,72 0/0:5,0:5:12.04:0,12,151 0/0:3,0:3:9.03:0,9,106 ./. 0/0:3,0:3:9.02:0,9,96 0/0:8,0:8:21.07:0,21,261 0/1:3,2:5:66.16:67,0,66 0/0:11,0:11:30.08:0,30,346 0/0:8,0:8:18.04:0,18,206 0/0:3,0:3:6.02:0,6,79 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,34 ./. ./. 0/0:2,0:2:6.02:0,6,71 0/0:6,0:6:15.04:0,15,189 0/0:3,0:3:9.03:0,9,105 0/0:2,0:2:6.02:0,6,66 0/0:2,0:2:6.01:0,6,56 0/0:4,0:4:12.03:0,12,134 0/0:1,0:1:3.01:0,3,35 0/0:2,0:2:6.02:0,6,72 0/1:3,1:4:25.76:26,0,97 0/0:4,0:5:9.02:0,9,107 0/0:4,0:4:12.04:0,12,145 0/1:1,1:2:30.96:33,0,31 0/0:4,0:4:12.04:0,12,143 0/0:3,0:3:9.03:0,9,108 0/0:2,0:2:6.02:0,6,73 1 6279370 . G C 16146.92 . AC=17;AF=0.202;AN=84;BaseQRankSum=2.790;DP=2665;Dels=0.00;FS=4.784;HRun=2;HaplotypeScore=1.4125;InbreedingCoeff=-0.2537;MQ=59.26;MQ0=0;MQRankSum=1.095;QD=13.64;ReadPosRankSum=2.201 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,166,2083 0/1:20,22:42:99:672,0,606 0/1:22,24:46:99:704,0,646 0/0:90,1:91:99:0,256,3346 0/0:73,0:73:99:0,214,2881 0/1:31,36:67:99:1194,0,940 0/0:66,0:66:99:0,184,2415 0/1:32,28:60:99:846,0,1101 0/1:27,24:51:99:740,0,765 0/1:27,29:56:99:843,0,827 0/0:49,0:49:99:0,135,1673 0/0:48,0:48:99:0,138,1754 0/0:49,0:49:99:0,138,1717 0/1:30,22:52:99:662,0,830 0/1:102,87:189:99:2317,0,2790 0/1:19,25:44:99:764,0,548 0/1:28,23:51:99:696,0,821 0/0:48,0:48:99:0,132,1661 0/0:92,0:92:99:0,247,3020 0/0:117,0:117:99:0,322,4072 0/1:51,49:100:99:1423,0,1410 0/0:51,0:51:99:0,132,1714 0/1:42,37:79:99:1165,0,1372 0/0:45,0:45:99:0,126,1660 0/0:68,0:68:99:0,199,2569 0/0:48,0:48:99:0,135,1746 0/0:33,0:33:96.29:0,96,1174 0/0:53,0:53:99:0,150,1884 0/0:43,0:43:99:0,120,1465 0/0:63,0:63:99:0,178,2180 0/1:29,11:40:99:273,0,942 0/1:55,52:107:99:1520,0,1515 0/1:37,26:63:99:699,0,1157 0/0:49,2:51:96.67:0,97,1684 0/0:61,0:62:99:0,168,2122 0/0:60,0:60:99:0,166,2096 0/1:40,36:76:99:1102,0,1130 0/0:67,0:67:99:0,190,2356 0/1:40,20:61:99:527,0,1207 0/0:55,0:55:99:0,156,1896 0/0:48,2:50:99:0,103,1681 0/0:41,0:41:99:0,120,1487 1 6500712 . C G 11.75 . 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G A 121.37 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.920;DP=618;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5911;InbreedingCoeff=-0.0256;MQ=53.82;MQ0=20;MQRankSum=2.035;QD=6.74;ReadPosRankSum=-1.375 GT:AD:DP:GQ:PL 0/0:9,0:9:21.06:0,21,255 0/0:7,0:7:21.06:0,21,259 0/0:13,0:14:36.10:0,36,423 0/0:23,0:23:60.17:0,60,767 0/0:28,0:28:69.20:0,69,866 0/0:21,0:21:42.14:0,42,577 0/0:16,0:16:45.14:0,45,576 0/0:23,0:23:51.12:0,51,613 0/0:13,0:13:27.06:0,27,317 0/0:16,0:16:48.14:0,48,573 0/0:11,0:11:24.08:0,24,300 0/1:8,2:10:36.90:37,0,229 0/1:2,5:8:54.50:147,0,54 0/0:12,0:13:30.09:0,30,366 0/0:35,0:36:90.25:0,90,1115 0/0:16,0:16:39.10:0,39,477 0/0:19,0:19:54.17:0,54,673 0/0:11,0:11:30.09:0,30,374 0/0:11,0:11:24.07:0,24,293 0/0:24,0:24:63.19:0,63,792 0/0:18,0:18:48.14:0,48,591 0/0:15,0:15:42.13:0,42,524 0/0:30,0:30:72.22:0,72,930 0/0:12,0:12:30.08:0,30,366 0/0:14,0:14:33.10:0,33,424 0/0:14,0:14:33.10:0,33,423 0/0:7,0:7:18.05:0,18,215 0/0:9,0:9:24.08:0,24,297 0/0:13,0:13:39.10:0,39,455 0/0:12,0:12:33.09:0,33,392 0/0:14,0:14:36.09:0,36,433 0/0:12,0:12:33.09:0,33,397 0/0:11,0:11:21.07:0,21,267 0/0:9,0:9:27.08:0,27,319 0/0:17,0:17:36.11:0,36,463 0/0:6,0:6:15.05:0,15,194 0/0:17,0:17:39.11:0,39,472 0/0:16,0:16:42.12:0,42,491 0/0:10,0:10:27.09:0,27,344 0/0:9,0:9:24.04:0,24,275 0/0:12,0:12:33.09:0,33,395 0/0:12,0:12:24.08:0,24,315 1 6524688 . T C 5200.41 . AC=9;AF=0.107;AN=84;BaseQRankSum=6.506;DP=2039;Dels=0.00;FS=4.172;HRun=0;HaplotypeScore=2.1179;InbreedingCoeff=-0.1200;MQ=58.72;MQ0=0;MQRankSum=-0.512;QD=12.84;ReadPosRankSum=-1.854 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,135,1629 0/0:44,0:44:99:0,123,1457 0/0:42,0:42:99:0,114,1392 0/0:86,0:86:99:0,247,3010 0/0:61,0:61:99:0,184,2230 0/0:40,0:40:99:0,117,1447 0/0:30,0:30:90.27:0,90,1096 0/0:49,0:49:99:0,138,1703 0/1:26,22:48:99:641,0,743 0/0:47,0:47:99:0,135,1601 0/1:23,19:42:99:584,0,607 0/0:38,0:38:99:0,108,1297 0/1:20,11:31:99:317,0,562 0/0:54,0:54:99:0,147,1799 0/0:102,0:102:99:0,283,3377 0/0:45,0:45:99:0,129,1522 0/0:50,0:50:99:0,147,1761 0/0:33,0:33:96.27:0,96,1130 0/1:25,30:55:99:838,0,753 0/1:50,36:86:99:949,0,1419 0/0:69,0:69:99:0,193,2303 0/0:59,0:59:99:0,165,1964 0/0:86,0:86:99:0,253,3047 0/1:19,20:39:99:615,0,562 0/0:43,0:43:99:0,123,1524 0/1:18,17:35:99:516,0,491 0/1:24,19:43:99:470,0,702 0/0:38,0:38:99:0,114,1346 0/1:16,10:26:99:271,0,449 0/0:36,0:36:99:0,99,1181 0/0:39,0:39:99:0,114,1359 0/0:49,0:49:99:0,141,1724 0/0:49,0:49:99:0,132,1611 0/0:40,0:40:99:0,120,1417 0/0:42,0:42:99:0,126,1502 0/0:52,0:52:99:0,144,1776 0/0:64,0:64:99:0,178,2160 0/0:41,0:41:99:0,114,1388 0/0:45,0:45:99:0,129,1545 0/0:42,0:42:99:0,123,1471 0/0:35,0:35:99:0,102,1214 0/0:36,0:37:99:0,105,1273 1 6524703 . C T 1129.04 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.225;DP=1672;Dels=0.00;FS=1.976;HRun=1;HaplotypeScore=2.1516;InbreedingCoeff=-0.0244;MQ=58.64;MQ0=0;MQRankSum=0.076;QD=16.60;ReadPosRankSum=-0.077 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,108,1303 0/0:28,0:28:72.21:0,72,858 0/0:33,0:33:93.27:0,93,1116 0/0:72,0:72:99:0,199,2426 0/0:50,0:50:99:0,138,1718 0/0:35,0:35:99:0,99,1266 0/0:22,0:22:66.18:0,66,791 0/0:41,0:41:99:0,108,1347 0/0:37,0:37:99:0,105,1262 0/0:38,0:38:99:0,99,1181 0/0:40,0:40:99:0,108,1290 0/0:28,0:28:78.19:0,78,907 0/0:22,0:22:57.14:0,57,652 0/0:39,0:39:99:0,111,1318 0/0:74,0:74:99:0,180,2102 0/0:39,0:39:99:0,105,1222 0/0:45,0:45:99:0,120,1434 0/0:32,1:33:59.68:0,60,1013 0/0:37,0:37:96.25:0,96,1126 0/0:73,0:73:99:0,192,2289 0/0:52,0:52:99:0,138,1615 0/0:51,0:51:99:0,135,1608 0/0:71,0:71:99:0,199,2467 0/0:44,0:44:99:0,126,1578 0/0:28,0:28:78.18:0,78,965 0/0:26,0:26:69.19:0,69,852 0/0:29,0:29:81.23:0,81,963 0/0:32,0:32:78.24:0,78,941 0/0:20,0:20:51.13:0,51,603 0/0:34,0:34:81.24:0,81,969 0/0:37,0:38:99:0,99,1151 0/0:49,0:49:99:0,129,1540 0/0:45,1:47:99:0,117,1392 0/1:9,23:32:99:623,0,163 0/1:16,20:36:99:569,0,457 0/0:41,0:41:99:0,108,1296 0/0:44,0:44:99:0,123,1399 0/0:38,0:38:99:0,102,1234 0/0:33,0:33:90.24:0,90,1046 0/0:32,0:32:84.25:0,84,999 0/0:32,0:32:87.23:0,87,1018 0/0:34,0:34:90.23:0,90,1053 1 6529182 . TTCC T 3626.60 . AC=12;AF=0.143;AN=84;BaseQRankSum=18.827;DP=2137;FS=10.348;HRun=0;HaplotypeScore=199.3512;InbreedingCoeff=-0.1848;MQ=58.89;MQ0=0;MQRankSum=0.533;QD=5.57;ReadPosRankSum=1.381 GT:AD:DP:GQ:PL 0/0:30,0:30:63.21:0,63,1192 0/1:29,0:48:99:203,0,836 0/1:17,0:31:99:99,0,694 0/1:65,36:102:99:1152,0,2110 0/0:123,6:128:56.77:0,57,5333 0/0:68,3:70:37.78:0,38,2710 0/0:61,2:63:84.70:0,85,2844 0/0:66,2:67:78.21:0,78,2985 0/0:38,0:39:63.39:0,63,1239 0/0:30,0:30:54.16:0,54,815 0/0:38,2:40:2.97:0,3,1501 0/0:24,0:24:15.05:0,15,1007 0/1:28,3:31:50.39:50,0,1043 0/1:39,4:43:64.24:64,0,1612 0/0:93,3:96:99:0,101,3829 0/0:30,0:30:57.20:0,57,1142 0/0:38,1:39:42.12:0,42,1556 0/0:34,2:36:0.97:6,0,1320 0/0:56,1:57:85.59:0,86,2111 0/0:89,4:93:39.75:0,40,3569 0/0:65,1:65:99:0,99,2643 0/0:34,1:35:20.07:0,20,1093 0/1:75,43:119:99:1526,0,2233 0/0:53,2:54:42.09:0,42,2213 0/0:76,0:76:99:0,193,3650 0/0:60,3:63:16.15:0,16,2260 0/0:29,0:29:60.20:0,60,1176 0/0:33,1:34:24.52:0,25,1185 0/0:27,0:27:45.15:0,45,902 0/1:26,1:41:99:151,0,541 0/0:38,1:39:51.15:0,51,1695 0/1:62,4:66:9.13:9,0,2699 0/1:44,0:48:99:121,0,697 0/0:33,0:33:81.26:0,81,1493 0/1:28,4:32:92.75:93,0,915 0/0:33,0:33:33.09:0,33,1326 0/0:53,2:55:35.31:0,35,1938 0/1:28,0:40:48.89:49,0,780 0/1:46,4:50:99:103,0,1644 0/0:36,0:36:81.25:0,81,1484 0/0:34,0:34:63.20:0,63,1168 0/0:26,0:26:23.31:0,23,959 1 6529188 . C T 2136.25 . AC=3;AF=0.036;AN=84;BaseQRankSum=-7.793;DP=2233;Dels=0.03;FS=13.624;HRun=1;HaplotypeScore=20.4330;InbreedingCoeff=-0.0370;MQ=58.78;MQ0=0;MQRankSum=-0.872;QD=17.23;ReadPosRankSum=-1.509 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,99,1246 0/0:32,0:32:90.26:0,90,1109 0/0:18,0:18:51.16:0,51,656 0/0:107,0:107:99:0,313,4073 0/0:130,0:130:99:0,385,5048 0/0:75,0:75:99:0,214,2869 0/0:67,0:67:99:0,199,2634 0/0:79,0:79:99:0,229,2974 0/1:22,19:41:99:549,0,697 0/1:14,16:30:99:442,0,351 0/0:39,1:40:88.69:0,89,1404 0/0:28,0:28:81.24:0,81,990 0/0:34,0:34:99:0,102,1268 0/0:47,0:47:99:0,138,1726 0/0:103,0:103:99:0,295,3718 0/0:31,0:31:93.29:0,93,1168 0/0:38,0:38:99:0,111,1383 0/0:38,0:38:99:0,108,1346 0/0:57,0:58:99:0,150,1863 0/0:98,0:98:99:0,286,3580 0/0:70,0:70:99:0,196,2409 0/0:36,0:36:99:0,102,1280 0/0:115,0:115:99:0,343,4508 0/0:54,0:54:99:0,157,2080 0/0:80,0:80:99:0,238,3121 0/0:66,0:66:99:0,193,2527 0/0:27,0:27:81.25:0,81,1013 0/0:36,0:36:99:0,99,1227 0/0:23,0:23:63.18:0,63,770 0/0:24,0:24:69.20:0,69,853 0/0:43,0:43:99:0,126,1561 0/0:71,0:71:99:0,205,2537 0/1:8,39:47:99:1221,0,168 0/0:37,0:37:99:0,108,1360 0/0:35,0:35:99:0,99,1241 0/0:33,0:33:96.27:0,96,1160 0/0:59,0:59:99:0,162,1995 0/0:27,0:27:78.23:0,78,957 0/0:48,0:48:99:0,129,1640 0/0:38,0:38:99:0,102,1280 0/0:35,0:35:99:0,105,1275 0/0:31,0:31:90.27:0,90,1131 1 6529640 . C T 2485.04 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.971;DP=3409;Dels=0.00;FS=0.377;HRun=0;HaplotypeScore=2.3518;InbreedingCoeff=-0.0244;MQ=59.32;MQ0=0;MQRankSum=0.684;QD=12.81;ReadPosRankSum=-0.193 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,156,1780 0/0:55,0:56:99:0,150,1704 0/0:58,0:58:99:0,162,1847 0/0:163,0:163:99:0,454,5553 0/0:136,0:136:99:0,373,4646 0/1:45,57:102:99:1609,0,1291 0/0:96,0:96:99:0,259,3173 0/1:57,35:92:99:938,0,1627 0/0:43,0:43:99:0,123,1434 0/0:46,1:47:94.11:0,94,1429 0/0:53,0:53:99:0,147,1694 0/0:48,0:48:99:0,126,1480 0/0:41,1:42:77.33:0,77,1236 0/0:45,0:45:99:0,132,1492 0/0:228,0:228:99:0,599,7008 0/0:77,2:79:99:0,152,2411 0/0:43,0:43:99:0,117,1336 0/0:49,0:49:99:0,141,1594 0/0:146,1:148:99:0,368,4485 0/0:155,0:155:99:0,412,4877 0/0:122,0:123:99:0,331,3829 0/0:81,0:82:99:0,229,2615 0/0:175,0:175:99:0,475,5999 0/0:71,0:71:99:0,202,2508 0/0:98,0:98:99:0,271,3402 0/0:77,0:77:99:0,217,2687 0/0:57,0:57:99:0,165,1881 0/0:61,0:61:99:0,171,1953 0/0:57,0:57:99:0,165,1878 0/0:52,0:52:99:0,135,1588 0/0:61,0:61:99:0,181,2077 0/0:109,0:109:99:0,289,3443 0/0:83,0:83:99:0,235,2731 0/0:42,0:42:99:0,114,1303 0/0:71,0:71:99:0,196,2263 0/0:64,0:64:99:0,174,1967 0/0:122,0:125:99:0,316,3661 0/0:51,0:51:99:0,147,1633 0/0:59,0:59:99:0,168,1931 0/0:56,0:56:99:0,159,1783 0/0:52,0:52:99:0,144,1664 0/0:41,0:41:99:0,117,1333 1 6530643 . G C 25.33 . AC=2;AF=0.031;AN=64;BaseQRankSum=-1.189;DP=219;Dels=0.00;FS=15.962;HRun=2;HaplotypeScore=0.2470;InbreedingCoeff=-0.0349;MQ=51.43;MQ0=0;MQRankSum=1.422;QD=1.69;ReadPosRankSum=-3.309 GT:AD:DP:GQ:PL 0/0:5,3:8:3:0,3,27 0/0:1,2:3:3.01:0,3,34 0/0:1,1:2:3.01:0,3,32 ./. ./. 0/0:3,4:7:3.01:0,3,35 ./. 0/0:6,3:9:2.99:0,3,23 0/0:1,2:3:3.01:0,3,33 0/1:3,5:8:1.76:31,3,0 0/0:2,0:2:3.01:0,3,32 0/0:2,2:4:3:0,3,26 0/0:5,0:5:6.01:0,6,62 0/0:2,0:2:3.01:0,3,32 0/0:5,3:8:6.01:0,6,61 0/0:4,2:6:6.02:0,6,67 ./. 0/0:2,3:5:3.01:0,3,31 0/0:6,0:6:12.03:0,12,126 0/0:9,4:13:9.02:0,9,91 0/0:8,1:9:9.01:0,9,89 0/0:5,0:5:12.02:0,12,120 ./. ./. 0/0:2,1:4:3.01:0,3,38 ./. 0/0:3,0:3:6.01:0,6,63 0/0:3,1:4:9.02:0,9,94 0/0:3,0:3:3.01:0,3,36 0/0:3,1:5:2.98:0,3,22 0/0:5,0:5:6:0,6,57 0/0:9,1:10:6.01:0,6,60 0/0:4,0:4:3.01:0,3,31 ./. 0/0:3,0:3:3.01:0,3,30 0/0:2,1:3:3.01:0,3,32 0/1:4,3:7:48.09:54,0,48 0/0:3,0:3:6.01:0,6,64 0/0:7,2:9:9.01:0,9,89 ./. 0/0:5,0:5:3:0,3,29 ./. 1 6530645 . T C 746.56 . AC=32;AF=0.421;AN=76;BaseQRankSum=-6.490;DP=290;Dels=0.00;FS=116.043;HRun=2;HaplotypeScore=0.2777;InbreedingCoeff=-0.1539;MQ=53.48;MQ0=0;MQRankSum=1.610;QD=3.73;ReadPosRankSum=-6.241 GT:AD:DP:GQ:PL 0/1:1,8:9:21.65:22,0,32 0/1:2,3:5:26.48:26,0,33 0/1:1,1:2:25.53:26,0,33 ./. 1/1:0,12:12:9.02:96,9,0 0/1:2,7:9:25.53:26,0,30 1/1:0,5:5:6.01:59,6,0 0/1:4,6:10:18.68:19,0,27 0/0:1,4:6:3.01:0,3,33 1/1:2,5:8:8.99:77,9,0 0/1:1,3:4:24.57:25,0,31 0/0:2,4:6:3.01:0,3,36 0/0:4,2:6:9.03:0,9,106 0/0:2,0:2:3.01:0,3,34 0/1:2,9:11:52.02:52,0,56 0/1:3,4:7:17.66:18,0,55 ./. 0/1:3,3:6:21.65:22,0,32 0/1:4,4:8:21.09:21,0,119 0/1:6,10:16:11.68:72,0,12 0/0:4,5:9:12.02:0,12,130 0/0:6,1:7:9.03:0,9,108 1/1:1,17:18:9.02:96,9,0 ./. 0/1:3,9:12:21.65:22,0,34 1/1:0,6:6:3.01:33,3,0 0/0:2,1:3:6.02:0,6,76 0/0:3,1:4:6.02:0,6,76 0/1:1,3:4:28.33:28,0,31 0/0:4,1:5:6.02:0,6,65 0/1:3,3:6:18.68:19,0,27 0/0:4,6:10:9:0,9,94 0/0:3,4:7:9.02:0,9,98 1/1:0,6:6:3.01:31,3,0 0/0:1,2:3:3.01:0,3,39 0/1:1,2:3:26.48:26,0,32 0/1:4,5:9:22.63:23,0,29 0/0:2,1:3:3.01:0,3,33 0/1:4,6:10:48.98:49,0,94 ./. 0/1:3,3:6:1.76:0,3,32 1/1:0,8:8:3:27,3,0 1 6531124 . T C 137.58 . AC=3;AF=0.036;AN=84;BaseQRankSum=-0.081;DP=393;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2503;InbreedingCoeff=-0.0472;MQ=59.09;MQ0=0;MQRankSum=-0.567;QD=5.98;ReadPosRankSum=-0.416 GT:AD:DP:GQ:PL 0/0:12,0:12:27.08:0,27,333 0/0:11,0:11:27.07:0,27,312 0/0:5,0:5:12.04:0,12,149 0/0:17,0:17:42.12:0,42,499 0/0:9,0:9:24.07:0,24,293 0/0:7,0:7:18.06:0,18,222 0/0:13,0:13:36.09:0,36,422 0/0:13,0:13:36.08:0,36,419 0/1:4,3:7:82.52:83,0,115 0/1:3,3:6:54.43:54,0,92 0/0:8,0:8:21.07:0,21,262 0/0:3,0:3:9.03:0,9,109 0/0:3,0:3:9.02:0,9,101 0/0:7,0:7:18.04:0,18,208 0/0:17,0:18:45.13:0,45,523 0/0:9,0:9:27.08:0,27,313 0/0:2,0:3:6.01:0,6,65 0/0:6,0:6:18.05:0,18,208 0/0:8,0:8:21.07:0,21,260 0/0:20,0:20:51.15:0,51,606 0/0:10,0:10:27.08:0,27,315 0/0:9,0:9:24.07:0,24,281 0/0:20,0:21:45.14:0,45,561 0/0:11,0:11:27.08:0,27,334 0/0:11,0:11:33.10:0,33,388 0/0:4,0:4:12.04:0,12,147 0/0:10,0:10:27.08:0,27,316 0/0:8,0:8:24.07:0,24,273 0/0:5,0:5:15.05:0,15,182 0/0:7,0:7:21.06:0,21,254 0/0:5,0:5:15.04:0,15,174 0/0:4,0:4:12.04:0,12,144 0/1:7,3:10:75.84:76,0,185 0/0:11,0:11:30.08:0,30,346 0/0:6,0:6:18.05:0,18,209 0/0:14,0:14:42.12:0,42,490 0/0:9,0:9:24.06:0,24,281 0/0:9,0:10:24.07:0,24,273 0/0:10,0:10:30.09:0,30,355 0/0:16,0:16:42.13:0,42,515 0/0:7,0:7:21.06:0,21,246 0/0:10,0:10:30.09:0,30,354 1 6533387 . T C 10.30 . AC=1;AF=0.014;AN=72;BaseQRankSum=0.168;DP=125;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.1835;InbreedingCoeff=-0.1001;MQ=57.74;MQ0=0;MQRankSum=1.040;QD=2.06;ReadPosRankSum=-0.414 GT:AD:DP:GQ:PL 0/0:2,0:2:6.01:0,6,58 0/0:4,0:4:12.04:0,12,143 0/0:3,0:3:9.03:0,9,101 0/0:3,0:3:6.02:0,6,69 0/0:5,0:5:12.04:0,12,142 0/0:2,0:2:6.02:0,6,74 ./. ./. 0/0:2,0:2:6.02:0,6,70 0/0:3,0:3:9.03:0,9,107 0/0:5,0:5:15.04:0,15,176 0/0:2,0:2:3.01:0,3,35 0/0:1,0:1:3.01:0,3,31 0/0:3,0:3:9.03:0,9,110 0/0:9,0:9:21.04:0,21,224 0/0:4,0:4:12.04:0,12,149 0/0:2,0:2:6.02:0,6,72 ./. 0/0:3,0:4:6.01:0,6,61 0/0:7,0:8:21.06:0,21,248 0/0:7,0:7:15.04:0,15,176 0/0:2,0:2:6.02:0,6,73 0/0:2,0:2:6.02:0,6,68 0/0:2,0:2:6.02:0,6,73 0/0:3,0:3:9.02:0,9,103 0/0:1,0:1:3.01:0,3,32 ./. 0/0:2,0:2:6.02:0,6,66 ./. 0/0:2,0:2:6.02:0,6,71 0/1:2,3:5:52.85:54,0,53 0/0:8,0:8:21.06:0,21,250 0/0:3,0:3:3.01:0,3,33 0/0:3,0:3:9.02:0,9,94 0/0:2,0:2:3.01:0,3,34 0/0:4,0:4:9.03:0,9,103 0/0:2,0:2:6.02:0,6,70 0/0:4,0:4:12.04:0,12,140 0/0:5,0:5:15.05:0,15,183 ./. 0/0:1,0:1:3:0,3,25 0/0:3,0:3:6.02:0,6,78 1 6533393 . G C 81.73 . AC=3;AF=0.048;AN=62;BaseQRankSum=0.305;DP=107;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2036;InbreedingCoeff=-0.1435;MQ=57.31;MQ0=0;MQRankSum=0.740;QD=7.43;ReadPosRankSum=1.315 GT:AD:DP:GQ:PL ./. 0/0:2,0:2:3.01:0,3,37 ./. 0/1:2,2:4:65.07:67,0,65 0/0:3,0:3:9.03:0,9,117 ./. ./. ./. 0/0:1,0:2:3.01:0,3,39 0/1:2,1:3:28.77:29,0,65 0/0:4,0:4:12.03:0,12,136 0/0:3,0:3:6.02:0,6,78 ./. 0/0:3,0:3:9.03:0,9,107 0/0:9,0:9:24.06:0,24,290 0/0:3,0:3:9.03:0,9,112 0/0:1,0:2:3.01:0,3,38 ./. 0/0:4,0:4:6.02:0,6,76 0/0:7,0:7:18.05:0,18,214 0/0:5,0:5:9.03:0,9,111 0/0:2,0:2:6.02:0,6,76 0/0:1,0:1:3.01:0,3,42 0/0:2,0:2:3.01:0,3,41 0/0:3,0:3:9.02:0,9,107 0/0:1,0:1:3.01:0,3,42 ./. 0/0:2,0:2:6.02:0,6,67 ./. 0/0:3,0:3:9.03:0,9,112 0/0:4,0:4:9.03:0,9,105 0/0:7,0:7:21.06:0,21,257 0/1:2,2:4:23.48:55,0,23 0/0:3,0:3:9.03:0,9,107 0/0:2,0:2:3.01:0,3,40 0/0:3,0:3:6.01:0,6,65 0/0:3,0:3:9.02:0,9,104 0/0:3,0:3:9.03:0,9,110 0/0:4,0:4:9.03:0,9,114 ./. ./. 0/0:4,0:4:6.02:0,6,79 1 6693097 . A G 5700.44 . AC=25;AF=0.298;AN=84;BaseQRankSum=-1.279;DP=618;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=1.0151;InbreedingCoeff=-0.3028;MQ=56.11;MQ0=1;MQRankSum=-7.023;QD=15.28;ReadPosRankSum=0.184 GT:AD:DP:GQ:PL 0/1:7,4:11:99:119,0,169 0/1:4,6:10:99:173,0,123 0/1:4,8:12:95.68:231,0,96 0/0:22,0:22:63.20:0,63,799 0/1:10,7:17:99:159,0,308 0/1:6,4:10:99:117,0,168 0/0:10,0:10:27.08:0,27,331 0/1:6,6:12:99:180,0,178 0/0:14,0:14:39.12:0,39,482 0/0:7,0:7:21.07:0,21,264 0/1:4,6:10:99:196,0,116 0/0:8,0:8:21.07:0,21,264 0/0:7,0:7:21.06:0,21,255 0/0:13,0:13:39.12:0,39,489 0/1:20,29:49:99:650,0,557 0/1:11,8:19:99:228,0,333 0/1:7,7:14:99:215,0,210 1/1:0,15:15:42.12:499,42,0 0/1:12,9:21:99:264,0,321 0/1:15,16:31:99:492,0,416 0/0:22,0:22:57.18:0,57,709 0/0:17,0:17:51.15:0,51,609 0/0:25,0:25:69.22:0,69,893 0/0:14,0:14:33.11:0,33,434 0/1:3,8:11:84.08:231,0,84 0/0:13,0:13:33.10:0,33,416 0/0:13,0:13:36.10:0,36,432 0/1:8,7:15:99:177,0,241 0/0:7,0:7:21.07:0,21,268 0/1:6,1:7:11.57:12,0,175 0/1:6,4:10:99:105,0,187 0/0:22,0:22:60.18:0,60,735 0/1:9,10:19:99:255,0,243 0/0:9,0:9:27.09:0,27,340 0/1:9,1:11:5.41:5,0,273 0/0:13,0:13:39.12:0,39,483 0/1:8,19:27:99:534,0,222 0/0:9,0:9:24.08:0,24,299 0/1:4,11:15:96.63:305,0,97 0/1:1,3:4:23.22:86,0,23 0/1:4,6:10:84.55:174,0,85 0/1:4,9:13:99:294,0,106 1 6693102 . C T 576.40 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.755;DP=587;Dels=0.00;FS=5.593;HRun=1;HaplotypeScore=1.1134;InbreedingCoeff=-0.0259;MQ=55.46;MQ0=1;MQRankSum=2.127;QD=12.26;ReadPosRankSum=0.402 GT:AD:DP:GQ:PL 0/0:9,0:9:24.08:0,24,311 0/0:9,0:9:27.08:0,27,338 0/0:12,0:12:36.09:0,36,411 0/0:20,0:20:60.19:0,60,796 0/0:15,0:16:36.11:0,36,482 0/0:10,0:10:30.09:0,30,376 0/0:8,0:8:24.06:0,24,300 0/0:13,0:13:36.11:0,36,462 0/0:13,0:13:36.11:0,36,462 0/0:6,0:6:18.06:0,18,234 0/0:11,0:11:33.10:0,33,411 0/0:8,0:8:21.07:0,21,271 0/0:6,0:6:18.06:0,18,230 0/0:13,0:13:39.13:0,39,497 0/0:45,0:45:99:0,111,1365 0/0:19,0:19:57.17:0,57,695 0/0:13,0:13:39.11:0,39,468 0/0:13,0:13:36.10:0,36,436 0/0:21,0:21:63.20:0,63,791 0/0:28,0:28:84.24:0,84,1013 0/1:15,9:24:99:275,0,436 0/0:16,0:16:48.15:0,48,595 0/0:22,0:22:60.20:0,60,817 0/0:14,0:14:33.11:0,33,457 0/0:11,0:11:30.09:0,30,379 0/0:10,0:10:24.08:0,24,324 0/0:14,0:14:39.12:0,39,483 0/0:12,0:12:33.10:0,33,397 0/0:8,0:8:24.07:0,24,303 0/0:7,0:7:18.06:0,18,229 0/0:10,0:10:30.09:0,30,371 0/1:9,14:23:99:364,0,259 0/0:17,0:17:42.13:0,42,537 0/0:9,0:9:27.08:0,27,333 0/0:9,0:9:27.08:0,27,337 0/0:11,0:11:30.10:0,30,380 0/0:28,0:29:84.25:0,84,1016 0/0:10,0:10:27.08:0,27,344 0/0:11,0:11:30.09:0,30,361 0/0:5,0:5:15.04:0,15,167 0/0:10,0:10:27.05:0,27,311 0/0:12,0:12:36.11:0,36,453 1 6697285 . C T 657.45 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.241;DP=2859;Dels=0.00;FS=0.770;HRun=2;HaplotypeScore=1.8496;InbreedingCoeff=-0.0120;MQ=59.05;MQ0=0;MQRankSum=1.194;QD=14.94;ReadPosRankSum=-0.846 GT:AD:DP:GQ:PL 0/0:65,0:65:99:0,180,2109 0/0:58,0:58:99:0,156,1831 0/0:47,1:48:99:0,135,1595 0/0:136,0:136:99:0,382,4695 0/0:133,0:133:99:0,385,4753 0/0:84,0:84:99:0,250,3105 0/0:62,0:62:99:0,181,2245 0/0:85,0:85:99:0,244,3014 0/0:57,0:57:99:0,162,1886 0/0:60,0:60:99:0,168,1940 0/0:51,0:51:99:0,153,1783 0/0:48,0:48:99:0,144,1678 0/0:32,0:32:90.26:0,90,1065 0/0:57,0:57:99:0,171,1962 0/0:162,1:163:99:0,414,5213 0/0:49,0:49:99:0,144,1666 0/0:50,0:50:99:0,147,1704 0/0:54,0:54:99:0,159,1880 0/0:94,0:94:99:0,256,3030 0/0:71,0:71:99:0,199,2340 0/0:81,0:81:99:0,238,2776 0/0:77,0:77:99:0,226,2606 0/0:125,0:125:99:0,358,4541 0/0:72,1:73:99:0,199,2440 0/0:85,0:85:99:0,250,3146 0/0:72,0:73:99:0,202,2486 0/0:33,0:33:93.24:0,93,1058 0/1:20,24:44:99:704,0,577 0/0:35,0:35:99:0,102,1198 0/0:59,0:59:99:0,174,2029 0/0:43,0:43:99:0,123,1419 0/0:77,0:77:99:0,214,2530 0/0:81,0:81:99:0,229,2581 0/0:50,0:50:99:0,147,1708 0/0:45,0:45:99:0,135,1613 0/0:64,0:65:99:0,183,2147 0/0:90,0:90:99:0,253,2937 0/0:55,0:55:99:0,150,1768 0/0:57,0:57:99:0,165,1943 0/0:52,0:52:99:0,144,1706 0/0:41,0:41:99:0,114,1312 0/0:61,0:61:99:0,177,1970 1 6700036 . G A 807.55 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.656;DP=1704;Dels=0.00;FS=2.463;HRun=0;HaplotypeScore=1.0261;InbreedingCoeff=-0.0244;MQ=58.78;MQ0=0;MQRankSum=0.538;QD=9.85;ReadPosRankSum=-0.922 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,138,1589 0/0:37,0:37:99:0,99,1194 0/0:31,0:31:87.26:0,87,1057 0/0:51,0:52:99:0,135,1734 0/0:45,0:45:99:0,129,1657 0/0:39,0:39:99:0,105,1329 0/0:24,0:25:69.20:0,69,872 0/0:39,0:39:99:0,99,1300 0/1:25,19:44:99:492,0,655 0/0:40,0:40:99:0,114,1370 0/1:24,14:38:99:378,0,655 0/0:25,0:25:66.18:0,66,791 0/0:33,0:33:81.23:0,81,994 0/0:35,0:35:96.25:0,96,1114 0/0:124,1:125:99:0,304,3651 0/0:34,0:34:90.28:0,90,1131 0/0:32,0:32:87.26:0,87,1053 0/0:25,0:25:72.19:0,72,831 0/0:56,0:57:99:0,144,1732 0/0:57,0:57:99:0,129,1619 0/0:56,0:57:99:0,144,1736 0/0:36,0:36:99:0,99,1211 0/0:55,0:55:99:0,144,1848 0/0:43,0:43:99:0,117,1502 0/0:45,0:45:99:0,126,1636 0/0:37,0:37:90.27:0,90,1200 0/0:28,0:28:75.23:0,75,944 0/0:21,0:21:60.17:0,60,719 0/0:25,0:25:63.17:0,63,794 0/0:42,0:42:99:0,120,1396 0/0:20,0:20:60.18:0,60,728 0/0:56,0:56:99:0,153,1886 0/0:36,0:36:96.27:0,96,1160 0/0:31,0:31:90.27:0,90,1095 0/0:36,0:36:99:0,102,1229 0/0:44,0:44:99:0,117,1447 0/0:55,0:55:99:0,144,1696 0/0:36,0:37:93.28:0,93,1143 0/0:33,0:33:99:0,99,1180 0/0:42,0:42:99:0,114,1406 0/0:31,0:31:90.26:0,90,1060 0/0:33,0:33:96.25:0,96,1117 1 6704635 . A G 86083 . AC=72;AF=0.857;AN=84;BaseQRankSum=2.632;DP=3275;DS;Dels=0.00;FS=7.684;HRun=0;HaplotypeScore=1.4303;InbreedingCoeff=-0.1667;MQ=59.19;MQ0=0;MQRankSum=1.050;QD=26.28;ReadPosRankSum=0.325 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1825,153,0 1/1:0,59:59:99:1885,162,0 1/1:0,58:58:99:1797,150,0 1/1:0,83:83:99:2784,223,0 1/1:0,83:83:99:2803,220,0 1/1:0,75:75:99:2553,202,0 1/1:0,53:53:99:1815,141,0 1/1:0,77:77:99:2660,211,0 1/1:1,82:83:99:2688,203,0 1/1:0,80:81:99:2567,217,0 1/1:0,61:61:99:1990,168,0 1/1:0,60:61:99:1860,156,0 1/1:0,46:46:99:1439,126,0 1/1:0,59:59:99:1932,162,0 0/1:121,121:246:99:2865,0,3155 0/1:29,43:72:99:1157,0,765 1/1:1,57:58:99:1838,130,0 1/1:0,49:49:99:1581,132,0 1/1:0,111:111:99:3430,295,0 1/1:0,136:137:99:4257,358,0 1/1:0,116:116:99:3447,289,0 0/1:31,32:64:99:804,0,804 1/1:0,94:94:99:3400,262,0 0/1:38,43:82:99:1294,0,958 0/1:38,43:81:99:1208,0,1050 1/1:0,61:61:99:2181,172,0 0/1:30,30:60:99:839,0,742 0/1:42,34:76:99:905,0,1209 0/1:24,26:50:99:711,0,623 0/1:34,28:62:99:740,0,981 1/1:0,61:61:99:2064,174,0 1/1:0,130:130:99:4096,343,0 0/1:41,46:87:99:1284,0,1052 1/1:0,57:57:99:1837,156,0 1/1:0,71:72:99:2270,190,0 0/1:42,27:69:99:641,0,1195 1/1:0,98:98:99:3070,265,0 1/1:0,74:74:99:2345,199,0 0/1:38,43:81:99:1178,0,998 1/1:0,69:70:99:2174,189,0 1/1:0,40:40:99:1349,117,0 1/1:0,78:78:99:2524,217,0 1 6711639 . T G 627.38 . 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G A 333.78 . 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G A 848.52 . 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T C 83338.06 . AC=80;AF=0.952;AN=84;BaseQRankSum=6.332;DP=2707;Dels=0.00;FS=15.411;HRun=0;HaplotypeScore=1.6192;InbreedingCoeff=-0.0500;MQ=59.19;MQ0=0;MQRankSum=-0.687;QD=30.79;ReadPosRankSum=-0.623 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1193,99,0 1/1:0,38:38:99:1238,105,0 0/1:16,22:38:99:675,0,390 1/1:0,206:207:99:6851,554,0 1/1:0,155:156:99:5597,445,0 0/1:85,60:146:99:1516,0,2461 1/1:0,105:105:99:3814,301,0 0/1:72,60:133:99:1692,0,1932 1/1:0,29:29:75.21:907,75,0 1/1:0,29:29:81.23:980,81,0 1/1:0,25:25:60.19:764,60,0 1/1:0,31:31:87.25:1047,87,0 1/1:0,27:27:78.18:905,78,0 1/1:1,45:46:99:1461,101,0 1/1:0,141:141:99:4463,376,0 1/1:0,26:27:78.22:926,78,0 1/1:0,39:39:99:1273,105,0 1/1:0,42:42:99:1419,120,0 1/1:0,52:53:99:1655,141,0 1/1:0,70:70:99:2299,193,0 1/1:0,61:62:99:2010,168,0 1/1:0,47:47:99:1564,129,0 1/1:0,190:191:99:6696,521,0 1/1:0,124:124:99:4296,337,0 1/1:1,122:124:99:4095,295,0 1/1:0,115:115:99:3899,301,0 1/1:0,33:33:90.25:1095,90,0 1/1:0,37:37:99:1219,102,0 0/1:13,22:35:99:595,0,321 1/1:0,52:52:99:1805,153,0 1/1:0,35:35:96.27:1128,96,0 1/1:1,62:64:99:2035,165,0 1/1:0,43:43:99:1382,117,0 1/1:0,23:23:66.16:762,66,0 1/1:0,30:30:87.26:1055,87,0 1/1:0,35:35:96.26:1119,96,0 1/1:0,48:49:99:1532,132,0 1/1:0,40:40:99:1444,117,0 1/1:0,40:40:99:1402,120,0 1/1:1,29:30:51.59:867,52,0 1/1:0,30:30:84.24:1010,84,0 1/1:0,48:48:99:1654,135,0 1 7870587 . C A 3.83 . 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A G 2699.87 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.922;DP=5260;DS;Dels=0.00;FS=2.386;HRun=0;HaplotypeScore=1.7014;InbreedingCoeff=-0.0244;MQ=59.44;MQ0=0;MQRankSum=1.924;QD=13.04;ReadPosRankSum=-0.658 GT:AD:DP:GQ:PL 0/0:104,0:104:99:0,286,3492 0/0:105,0:105:99:0,289,3516 0/0:117,0:117:99:0,340,4108 0/0:144,0:144:99:0,409,5029 0/0:150,0:150:99:0,433,5309 0/0:130,0:130:99:0,376,4753 0/0:130,0:130:99:0,361,4528 0/0:124,0:124:99:0,355,4376 0/0:124,0:124:99:0,352,4251 0/0:121,0:121:99:0,340,4123 0/0:103,0:103:99:0,295,3557 0/0:129,0:129:99:0,367,4450 0/0:101,0:101:99:0,280,3415 0/0:120,0:120:99:0,322,3980 0/0:250,0:250:99:0,692,8285 0/0:91,0:91:99:0,268,3175 0/0:119,0:119:99:0,337,4123 0/0:131,0:131:99:0,382,4601 0/0:162,0:163:99:0,442,5343 0/0:162,0:162:99:0,433,5376 0/0:155,0:155:99:0,415,5065 0/0:118,0:118:99:0,325,3959 0/0:197,0:197:99:0,551,6826 0/0:134,0:134:99:0,370,4663 0/0:146,0:146:99:0,409,5039 0/0:118,0:118:99:0,322,3995 0/0:87,0:88:99:0,244,2952 0/0:113,0:113:99:0,325,3955 0/0:91,0:91:99:0,253,3061 0/0:95,0:95:99:0,271,3250 0/0:113,0:113:99:0,328,4001 0/0:141,0:141:99:0,388,4794 0/0:120,0:120:99:0,328,4006 0/0:109,0:109:99:0,325,3931 0/0:114,0:114:99:0,313,3872 0/0:143,0:143:99:0,397,4846 0/0:134,0:134:99:0,349,4307 0/0:93,0:93:99:0,271,3271 0/0:105,0:105:99:0,292,3554 0/1:57,56:113:99:1409,0,1676 0/1:44,50:94:99:1353,0,1284 0/0:108,0:108:99:0,307,3743 1 7897133 . A G 14589.18 . 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G A 79436.87 . 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C T 19889.11 . AC=12;AF=0.143;AN=84;BaseQRankSum=7.647;DP=4842;DS;Dels=0.00;FS=0.474;HRun=0;HaplotypeScore=1.8658;InbreedingCoeff=0.0278;MQ=59.43;MQ0=0;MQRankSum=3.089;QD=16.37;ReadPosRankSum=-0.040 GT:AD:DP:GQ:PL 0/0:90,0:90:99:0,244,2975 0/0:100,0:100:99:0,277,3360 0/0:81,0:81:99:0,217,2619 0/0:180,0:180:99:0,482,6247 0/0:209,0:209:99:0,557,7238 0/0:194,0:194:99:0,527,6890 0/0:127,0:127:99:0,346,4522 0/0:157,0:157:99:0,415,5391 0/0:97,0:97:99:0,271,3307 0/1:43,37:80:99:1036,0,1249 0/0:118,0:118:99:0,337,4040 0/0:83,1:84:99:0,207,2807 0/0:95,0:95:99:0,259,3028 0/0:89,0:90:99:0,241,2922 0/0:249,0:249:99:0,647,7971 0/0:73,0:73:99:0,205,2436 0/0:81,0:81:99:0,226,2676 0/0:93,0:93:99:0,253,3114 0/1:72,66:138:99:2023,0,1802 0/1:58,72:131:99:2194,0,1595 0/0:125,0:125:99:0,316,3833 0/0:90,0:91:99:0,238,2860 0/0:214,0:214:99:0,593,7745 1/1:2,123:125:99:4186,280,0 0/1:79,70:149:99:1999,0,2253 0/1:71,82:153:99:2454,0,2066 0/0:64,0:64:99:0,184,2189 0/1:57,38:95:99:1122,0,1616 0/0:102,0:103:99:0,280,3445 0/0:80,0:80:99:0,217,2597 0/0:86,0:86:99:0,238,2879 0/0:133,0:133:99:0,355,4352 0/0:91,0:91:99:0,247,2997 0/1:48,43:91:99:1242,0,1284 0/1:44,49:93:99:1531,0,1249 0/1:33,34:67:99:1020,0,918 0/0:150,0:151:99:0,409,4870 0/1:53,40:93:99:1081,0,1414 0/0:80,0:82:99:0,223,2644 0/0:89,0:90:99:0,244,2952 0/0:102,1:103:99:0,247,3355 0/0:95,0:96:99:0,268,3250 1 7980985 . TA T 802.38 . AC=1;AF=0.012;AN=84;BaseQRankSum=11.140;DP=3351;DS;FS=6.885;HRun=10;HaplotypeScore=182.5413;InbreedingCoeff=-0.0125;MQ=59.34;MQ0=1;MQRankSum=0.894;QD=7.87;ReadPosRankSum=-2.590 GT:AD:DP:GQ:PL 0/0:56,2:58:83.19:0,83,1352 0/0:48,0:49:99:0,114,1218 0/0:49,0:49:99:0,109,1400 0/0:139,4:143:99:0,196,3398 0/0:138,0:139:99:0,332,3803 0/0:145,1:145:99:0,343,3674 0/0:127,2:127:99:0,252,3183 0/0:130,0:131:99:0,300,3215 0/0:62,0:62:99:0,123,1566 0/0:64,0:63:99:0,144,1564 0/0:50,1:51:85.23:0,85,1145 0/0:64,1:65:99:0,116,1720 0/0:37,1:38:64.18:0,64,933 0/0:49,1:50:99:0,103,1337 0/0:159,0:159:99:0,366,4162 0/0:40,0:40:93.24:0,93,1014 0/0:71,2:73:99:0,120,1774 0/0:56,0:56:99:0,111,1412 0/0:89,0:89:99:0,211,2304 0/1:59,43:102:99:858,0,870 0/0:92,1:93:99:0,168,2253 0/0:54,0:54:99:0,117,1465 0/0:172,2:173:99:0,387,4658 0/0:156,1:152:99:0,309,4001 0/0:141,0:135:99:0,340,3680 0/0:129,1:129:99:0,256,2981 0/0:43,0:43:99:0,99,1078 0/0:56,1:57:13.88:0,14,1059 0/0:43,0:43:73.84:0,74,1002 0/0:62,0:62:99:0,135,1468 0/0:40,0:40:90.24:0,90,992 0/0:90,0:90:99:0,220,2382 0/0:59,0:59:99:0,138,1504 0/0:51,0:51:99:0,117,1254 0/0:48,0:48:99:0,111,1207 0/0:54,0:54:99:0,123,1353 0/0:64,1:65:99:0,135,1680 0/0:50,0:50:99:0,111,1189 0/0:68,2:70:99:0,110,1674 0/0:46,1:47:99:0,103,1339 0/0:61,0:61:99:0,144,1571 0/0:59,1:60:99:0,115,1476 1 7998823 . C T 4832.35 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.555;DP=7432;DS;Dels=0.00;FS=1.513;HRun=0;HaplotypeScore=2.8128;InbreedingCoeff=-0.0244;MQ=59.58;MQ0=0;MQRankSum=-0.124;QD=12.39;ReadPosRankSum=2.183 GT:AD:DP:GQ:PL 0/0:138,0:138:99:0,358,4287 0/0:145,0:146:99:0,379,4529 0/0:157,0:157:99:0,403,4850 0/0:239,0:240:99:0,647,8137 0/0:211,0:211:99:0,587,7302 0/0:232,0:232:99:0,602,7710 0/0:223,1:224:99:0,555,7414 0/0:236,1:237:99:0,608,7852 0/0:181,0:181:99:0,484,5777 0/0:149,0:149:99:0,400,4711 0/0:146,0:146:99:0,397,4709 0/0:140,0:140:99:0,388,4534 0/0:141,0:141:99:0,382,4478 0/0:130,0:130:99:0,340,4101 0/1:138,112:250:99:3051,0,3681 0/0:110,0:110:99:0,298,3497 0/1:73,67:140:99:1782,0,1922 0/0:145,1:146:99:0,371,4624 0/0:234,0:234:99:0,602,7084 0/0:243,0:243:99:0,635,7662 0/0:230,0:232:99:0,593,6937 0/0:156,0:156:99:0,427,5014 0/0:215,0:215:99:0,578,7328 0/0:242,0:242:99:0,614,7905 0/0:233,1:234:99:0,573,7620 0/0:231,0:231:99:0,572,7353 0/0:111,0:111:99:0,289,3483 0/0:162,0:162:99:0,433,5119 0/0:143,0:143:99:0,373,4436 0/0:132,0:132:99:0,355,4203 0/0:152,0:152:99:0,412,4911 0/0:229,3:232:99:0,502,6941 0/0:191,0:191:99:0,487,5852 0/0:131,0:131:99:0,364,4301 0/0:152,0:152:99:0,415,4955 0/0:166,2:168:99:0,410,5316 0/0:204,0:204:99:0,511,6145 0/0:168,0:168:99:0,442,5227 0/0:145,0:145:99:0,397,4694 0/0:148,0:148:99:0,400,4752 0/0:120,0:120:99:0,343,4038 0/0:167,0:168:99:0,451,5317 1 8000029 . ACTATGTTGT A 128.33 . AC=6;AF=0.071;AN=84;BaseQRankSum=-2.782;DP=2746;FS=2154.798;HRun=0;HaplotypeScore=465.7507;InbreedingCoeff=-0.0942;MQ=59.17;MQ0=0;MQRankSum=0.625;QD=0.33;ReadPosRankSum=-19.217 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,123,7185 0/1:53,0:53:29.31:29,0,4992 0/0:60,0:60:99:0,138,6613 0/1:116,0:116:99:122,0,11112 0/0:86,0:86:99:0,130,9942 0/0:82,0:80:99:0,101,8563 0/0:81,0:80:99:0,164,9552 0/0:76,0:74:66.16:0,66,8088 0/0:52,0:52:97.94:0,98,6095 0/1:51,17:68:16.74:17,0,6843 0/0:53,0:53:1.74:3,0,5049 0/0:49,0:49:51.62:0,52,5070 0/0:56,0:56:28.42:0,28,6316 0/1:58,0:58:15.60:16,0,5937 0/0:169,0:169:19.53:0,20,16905 0/1:45,0:45:27.97:28,0,5159 0/0:55,0:55:84.74:0,85,6549 0/0:51,0:51:41.01:0,41,5920 0/0:78,0:78:47.27:0,47,8423 0/0:79,0:79:99:0,113,7574 0/0:79,0:79:27.54:0,28,8479 0/0:49,0:49:58.35:0,58,5328 0/0:111,0:111:34.30:0,34,11444 0/0:64,0:63:94.73:0,95,7089 0/0:83,0:81:99:0,112,7834 0/0:73,0:72:32.84:0,33,7145 0/0:36,0:36:31.47:0,31,3812 0/0:52,0:52:84.54:0,85,5683 0/0:41,0:41:0.85:0,1,4622 0/0:58,0:58:40.04:0,40,6728 0/0:60,0:59:56.27:0,56,7093 0/0:74,0:74:26.76:0,27,6905 0/0:58,0:58:38.52:0,39,6031 0/0:59,0:59:23.61:0,24,5743 0/0:57,0:57:55.20:0,55,6680 0/1:54,0:54:27.60:28,0,6024 0/0:57,0:57:14.11:0,14,6212 0/0:47,0:47:41.36:0,41,4569 0/0:42,0:42:14.85:0,15,4541 0/0:56,0:56:26.21:0,26,5784 0/0:50,0:50:80.07:0,80,5317 0/0:55,0:55:11.50:0,12,5949 1 8425900 . T C 9600.91 . AC=17;AF=0.202;AN=84;BaseQRankSum=4.816;DP=2188;Dels=0.00;FS=3.849;HRun=0;HaplotypeScore=1.3801;InbreedingCoeff=-0.1062;MQ=59.19;MQ0=0;MQRankSum=0.808;QD=11.87;ReadPosRankSum=-0.102 GT:AD:DP:GQ:PL 0/1:20,15:36:99:399,0,556 0/0:32,0:32:90.24:0,90,1056 0/1:24,16:40:99:426,0,608 0/0:100,0:101:99:0,232,2686 0/0:108,0:108:99:0,268,3177 0/0:66,1:72:99:0,153,1845 0/0:61,1:65:99:0,119,1749 0/0:52,0:53:99:0,129,1460 0/0:35,1:37:90.25:0,90,1048 0/0:43,0:44:99:0,114,1271 0/0:38,0:39:99:0,105,1247 0/0:37,0:38:93.23:0,93,1095 0/0:33,0:33:81.24:0,81,971 0/1:14,19:34:99:488,0,420 0/0:118,1:122:99:0,298,3397 0/0:34,0:35:90.21:0,90,1037 0/0:43,0:44:99:0,111,1295 0/1:27,24:51:99:585,0,772 0/1:35,17:53:99:333,0,928 0/1:50,38:88:99:907,0,1186 0/0:67,0:67:99:0,171,2065 0/1:23,33:59:99:841,0,534 0/1:57,37:95:99:998,0,1403 0/0:62,0:62:99:0,156,1774 0/1:21,23:44:99:682,0,515 0/0:53,0:54:99:0,138,1614 0/0:25,1:27:63.18:0,63,767 0/0:35,0:37:96.22:0,96,1072 0/0:35,0:36:81.21:0,81,954 0/1:28,23:51:99:581,0,694 0/0:34,0:35:93.27:0,93,1092 0/0:68,0:69:99:0,186,2100 0/1:25,30:55:99:692,0,646 0/0:33,0:34:87.23:0,87,1010 0/0:34,1:37:60.07:0,60,986 0/0:45,0:48:99:0,114,1317 0/1:46,23:72:99:512,0,1219 0/1:20,6:26:99:137,0,571 0/0:47,2:50:99:0,126,1432 1/1:0,31:31:87.26:1056,87,0 0/1:19,14:33:99:368,0,541 0/1:18,21:41:99:595,0,460 1 9009406 . C T 12554.68 . AC=27;AF=0.321;AN=84;BaseQRankSum=6.117;DP=1419;Dels=0.00;FS=6.993;HRun=0;HaplotypeScore=0.7056;InbreedingCoeff=-0.3012;MQ=59.24;MQ0=0;MQRankSum=-0.599;QD=14.96;ReadPosRankSum=1.120 GT:AD:DP:GQ:PL 0/1:14,19:33:99:556,0,366 0/1:9,5:14:99:137,0,249 0/0:23,0:23:66.19:0,66,768 0/0:62,0:62:99:0,175,2130 0/1:37,33:70:99:978,0,1128 0/1:20,19:39:99:554,0,593 1/1:0,24:24:69.21:845,69,0 0/1:26,16:42:99:381,0,826 0/0:17,0:17:51.14:0,51,582 0/0:23,0:23:66.18:0,66,767 0/0:28,0:28:78.22:0,78,909 0/1:11,12:23:99:320,0,300 0/1:13,13:26:99:354,0,358 0/1:14,12:27:99:340,0,373 0/0:105,0:105:99:0,256,3072 0/1:17,19:36:99:565,0,440 0/1:13,11:24:99:337,0,321 0/1:20,8:28:99:213,0,543 0/1:21,18:39:99:520,0,572 0/0:61,0:61:99:0,165,1916 0/0:30,0:30:84.24:0,84,961 0/1:13,13:26:99:383,0,329 0/1:25,39:64:99:1185,0,694 0/0:40,0:40:99:0,114,1405 0/1:17,18:35:99:558,0,491 0/1:22,12:34:99:285,0,637 0/0:27,0:27:81.19:0,81,894 0/0:19,0:19:57.16:0,57,644 0/1:10,12:22:99:343,0,266 0/0:21,1:22:24.91:0,25,616 0/0:10,0:10:30.09:0,30,349 0/0:50,0:50:99:0,132,1555 0/1:22,15:37:99:427,0,564 0/1:21,15:36:99:400,0,614 0/1:2,25:27:0.97:798,6,0 0/0:28,0:28:78.22:0,78,911 0/1:16,23:40:99:620,0,437 0/1:18,6:24:99:113,0,535 0/1:13,4:17:96.35:96,0,385 0/1:8,16:24:99:498,0,177 0/1:3,25:28:34.34:749,0,34 0/0:35,0:35:90.26:0,90,1073 1 9009444 . A C 17956.30 . AC=33;AF=0.393;AN=84;BaseQRankSum=24.908;DP=1615;Dels=0.00;FS=0.585;HRun=0;HaplotypeScore=1.3267;InbreedingCoeff=-0.2236;MQ=59.22;MQ0=0;MQRankSum=0.683;QD=17.27;ReadPosRankSum=0.037 GT:AD:DP:GQ:PL 0/1:19,20:39:99:590,0,458 0/1:18,13:31:99:380,0,526 0/0:30,0:30:87.25:0,87,1020 0/0:73,0:73:99:0,199,2350 0/1:28,26:54:99:886,0,805 0/1:21,23:44:99:667,0,650 1/1:0,34:34:96.29:1286,96,0 0/1:25,21:46:99:690,0,714 0/0:32,0:32:81.24:0,81,977 0/0:35,0:35:99:0,99,1164 0/0:27,0:27:78.23:0,78,918 0/1:20,16:36:99:478,0,563 0/1:19,19:38:99:570,0,492 0/1:19,23:42:99:715,0,520 0/0:113,0:113:99:0,289,3497 0/1:15,20:35:99:652,0,397 0/1:16,15:31:99:417,0,464 0/1:13,11:24:99:350,0,360 0/1:29,24:53:99:598,0,844 0/0:69,0:69:99:0,187,2239 0/1:18,15:33:99:456,0,389 1/1:0,23:23:66.21:828,66,0 0/1:33,38:71:99:1223,0,916 0/0:36,0:36:99:0,102,1223 0/1:14,21:35:99:715,0,380 0/1:19,11:30:99:328,0,513 0/1:20,15:35:99:465,0,548 0/1:21,9:30:99:208,0,626 1/1:0,28:28:78.23:978,78,0 0/0:29,0:29:87.26:0,87,1024 0/0:25,0:25:72.22:0,72,865 0/0:41,0:41:99:0,114,1328 0/1:17,24:41:99:686,0,435 0/1:17,16:33:99:454,0,508 1/1:0,27:27:72.23:927,72,0 0/0:31,0:31:93.28:0,93,1103 0/1:23,21:44:99:568,0,637 0/1:14,9:23:99:252,0,403 0/1:14,7:21:99:177,0,399 0/1:11,19:30:99:591,0,281 0/1:3,26:29:2.02:819,0,2 0/0:34,0:34:99:0,99,1177 1 9009451 . G C 1072.30 . AC=3;AF=0.036;AN=84;BaseQRankSum=-3.126;DP=1668;Dels=0.00;FS=5.582;HRun=1;HaplotypeScore=1.7938;InbreedingCoeff=-0.0370;MQ=59.13;MQ0=0;MQRankSum=2.170;QD=10.94;ReadPosRankSum=-3.191 GT:AD:DP:GQ:PL 0/0:37,0:37:96.28:0,96,1213 0/0:33,0:33:93.30:0,93,1191 0/0:31,0:31:87.27:0,87,1115 0/0:81,0:81:99:0,202,2708 0/0:58,0:58:99:0,166,2203 0/0:44,0:44:99:0,120,1599 0/0:37,0:37:99:0,102,1351 0/0:46,0:46:99:0,129,1739 0/0:31,0:31:78.24:0,78,999 0/0:39,0:39:99:0,108,1361 0/0:25,0:25:69.22:0,69,892 0/0:37,0:37:96.31:0,96,1243 0/0:35,0:35:93.28:0,93,1159 0/0:42,0:42:99:0,114,1464 0/0:110,1:111:99:0,289,3663 0/0:39,0:39:99:0,114,1414 0/0:32,0:32:90.27:0,90,1125 0/0:28,0:28:75.24:0,75,967 0/0:52,0:52:99:0,141,1761 0/0:74,0:74:99:0,202,2546 0/1:19,21:41:99:511,0,411 0/1:14,15:29:99:423,0,373 0/0:76,0:76:99:0,199,2663 0/0:35,0:35:96.31:0,96,1304 0/0:37,0:37:99:0,108,1409 0/0:28,0:28:72.23:0,72,965 0/0:37,0:37:99:0,99,1256 0/1:20,8:28:99:215,0,639 0/0:29,0:29:78.25:0,78,1007 0/0:35,0:35:99:0,105,1290 0/0:27,0:27:75.24:0,75,972 0/0:40,0:40:99:0,111,1410 0/0:47,0:47:99:0,126,1605 0/0:30,0:30:87.24:0,87,1054 0/0:27,1:28:30.65:0,31,834 0/0:32,0:32:90.25:0,90,1113 0/0:46,0:46:99:0,114,1426 0/0:23,0:23:63.19:0,63,797 0/0:20,0:20:51.16:0,51,647 0/0:29,0:29:84.26:0,84,1044 0/0:25,0:25:60.19:0,60,783 0/0:34,0:34:93.30:0,93,1188 1 9009470 . G C 1035.17 . 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G A 5393.20 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.401;DP=8009;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.0399;InbreedingCoeff=-0.0244;MQ=59.64;MQ0=0;MQRankSum=0.588;QD=13.42;ReadPosRankSum=1.755 GT:AD:DP:GQ:PL 0/0:165,0:165:99:0,466,5673 0/0:149,0:149:99:0,433,5244 0/0:155,0:155:99:0,418,5166 0/0:250,0:250:99:0,734,9593 0/0:249,0:250:99:0,707,9373 0/0:250,0:250:99:0,722,9433 0/0:250,0:250:99:0,707,9304 0/0:249,0:250:99:0,698,9246 0/0:170,0:170:99:0,472,5774 0/0:154,0:154:99:0,418,5035 0/0:152,0:152:99:0,424,5154 0/0:164,0:164:99:0,460,5644 0/0:176,0:176:99:0,481,5862 0/0:165,0:165:99:0,457,5638 0/0:249,1:250:99:0,654,8146 0/0:153,0:153:99:0,427,5207 0/0:177,0:177:99:0,505,6179 0/0:155,0:155:99:0,421,5167 0/0:247,0:248:99:0,698,8430 0/0:249,0:249:99:0,707,8635 0/1:134,115:250:99:3397,0,3618 0/1:83,69:152:99:1997,0,2390 0/0:249,0:250:99:0,695,9190 0/0:235,1:236:99:0,659,8734 0/0:249,0:249:99:0,698,9226 0/0:221,0:221:99:0,617,8159 0/0:114,0:114:99:0,319,3914 0/0:171,0:171:99:0,487,5879 0/0:165,1:166:99:0,432,5577 0/0:154,0:154:99:0,424,5121 0/0:156,2:158:99:0,395,5412 0/0:250,0:250:99:0,701,8581 0/0:179,0:180:99:0,490,6002 0/0:157,0:157:99:0,436,5283 0/0:172,1:173:99:0,478,5773 0/0:163,0:163:99:0,454,5581 0/0:213,1:215:99:0,543,6863 0/0:167,0:167:99:0,469,5660 0/0:183,0:183:99:0,493,6047 0/0:192,0:193:99:0,542,6510 0/0:119,0:119:99:0,322,3880 0/0:156,0:156:99:0,451,5416 1 9030964 . C T 33134.50 . AC=23;AF=0.274;AN=84;BaseQRankSum=-24.541;DP=4668;DS;Dels=0.00;FS=14.162;HRun=0;HaplotypeScore=8.0628;InbreedingCoeff=-0.0178;MQ=58.95;MQ0=0;MQRankSum=-1.909;QD=13.94;ReadPosRankSum=1.838 GT:AD:DP:GQ:PL 0/1:37,50:90:99:1275,0,784 0/0:105,0:105:99:0,250,2982 0/0:86,0:89:99:0,220,2653 0/1:64,82:150:99:1993,0,1726 1/1:0,101:105:99:2720,241,0 0/1:48,48:98:99:1113,0,1345 0/1:53,44:98:99:1060,0,1429 0/1:40,47:90:99:1138,0,793 0/1:42,47:90:99:1204,0,1101 0/0:114,0:114:99:0,289,3439 1/1:0,85:86:99:2622,235,0 0/0:107,0:110:99:0,286,3449 0/1:40,37:80:99:976,0,1051 0/0:96,0:96:99:0,250,2936 0/1:98,113:224:99:2772,0,2085 0/1:54,49:104:99:1238,0,1431 0/1:49,53:104:99:1268,0,1339 0/0:93,1:94:99:0,196,2722 0/1:97,66:168:99:1635,0,2724 0/1:104,88:194:99:2140,0,2744 1/1:1,127:135:99:4027,317,0 0/1:54,59:113:99:1366,0,1330 0/0:120,1:122:99:0,250,3560 0/0:100,0:101:99:0,238,3041 0/0:93,0:93:99:0,232,2928 0/0:95,0:95:99:0,235,3049 0/0:84,0:85:99:0,208,2489 0/0:119,0:124:99:0,310,3691 0/1:42,39:84:99:912,0,1131 0/0:97,0:97:99:0,250,2996 0/0:90,0:92:99:0,232,2785 0/1:91,67:159:99:1638,0,2332 0/0:108,0:110:99:0,268,3174 0/0:101,0:104:99:0,256,3051 0/0:90,1:92:99:0,211,2841 0/1:65,41:108:99:956,0,1580 0/0:157,0:162:99:0,406,4790 0/1:51,44:97:99:1080,0,1209 0/0:102,0:106:99:0,262,3140 0/0:112,1:115:99:0,254,3361 0/0:84,1:85:99:0,171,2420 0/0:98,0:99:99:0,253,3032 1 9063391 . T G 168.65 . AC=5;AF=0.060;AN=84;BaseQRankSum=-23.744;DP=1977;Dels=0.00;FS=178.441;HRun=3;HaplotypeScore=2.4531;InbreedingCoeff=-0.0851;MQ=58.81;MQ0=0;MQRankSum=-0.362;QD=0.75;ReadPosRankSum=-9.310 GT:AD:DP:GQ:PL 0/1:24,9:33:29.59:30,0,605 0/0:28,18:46:6.31:0,6,667 0/0:24,8:32:63.14:0,63,719 0/0:76,35:112:50.46:0,50,1899 0/1:46,36:82:99:128,0,1214 0/0:54,19:73:99:0,124,1668 0/0:63,22:85:99:0,162,1891 0/0:50,18:68:82.84:0,83,1308 0/0:23,7:30:66.12:0,66,708 0/1:23,10:33:10.68:11,0,676 0/0:27,9:36:57.54:0,58,903 0/0:24,11:35:24.81:0,25,689 0/0:23,7:30:60.13:0,60,671 0/0:29,6:35:81.22:0,81,930 0/0:90,29:119:99:0,150,2669 0/0:21,5:27:54.14:0,54,623 0/0:24,10:35:2.10:0,2,627 0/0:16,10:26:0.76:0,1,463 0/0:39,13:52:43.31:0,43,1084 0/0:49,8:57:99:0,120,1592 0/0:32,11:43:2.54:1,0,951 0/0:24,11:35:35.74:0,36,717 0/0:84,38:122:99:0,152,2491 0/0:44,18:62:98.62:0,99,1125 0/0:43,12:55:68.60:0,69,1023 0/0:45,17:62:99:0,114,1363 0/0:26,5:31:38.21:0,38,787 0/0:26,9:35:40.48:0,40,743 0/0:20,11:31:10.75:0,11,535 0/1:26,13:39:57.67:58,0,699 0/0:23,6:29:40.47:0,40,667 0/0:47,5:52:99:0,114,1366 0/0:21,5:26:54.12:0,54,583 0/0:16,9:25:36.10:0,36,423 0/0:22,9:32:24.52:0,25,573 0/0:25,6:31:63.16:0,63,726 0/1:27,10:37:35.06:35,0,761 0/0:31,13:44:28.93:0,29,849 0/0:28,10:38:72.19:0,72,831 0/0:27,9:36:53.47:0,53,789 0/0:24,7:31:63.17:0,63,734 0/0:24,11:35:60.17:0,60,720 1 9074861 . C T 785.70 . AC=8;AF=0.095;AN=84;BaseQRankSum=0.800;DP=382;Dels=0.00;FS=2.512;HRun=0;HaplotypeScore=0.5405;InbreedingCoeff=0.1183;MQ=58.83;MQ0=0;MQRankSum=-0.210;QD=12.47;ReadPosRankSum=0.342 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,74 0/0:10,0:10:30.06:0,30,332 0/0:7,0:7:21.06:0,21,245 0/0:34,0:34:87.26:0,87,1095 0/0:19,0:19:54.15:0,54,658 0/0:10,0:10:30.05:0,30,353 0/0:10,0:10:24.07:0,24,295 0/0:8,0:8:21.07:0,21,263 0/0:8,0:8:24.06:0,24,270 0/0:8,0:8:21.06:0,21,248 0/0:1,0:1:3.01:0,3,33 0/0:8,0:8:21.06:0,21,257 0/0:3,0:3:9.02:0,9,97 0/0:5,0:5:15.05:0,15,187 0/0:17,0:17:45.11:0,45,520 0/0:7,0:7:21.06:0,21,247 0/0:7,0:7:21.06:0,21,260 0/0:3,0:3:9.03:0,9,105 0/0:13,0:14:33.10:0,33,390 0/1:6,3:9:87.55:88,0,154 0/0:10,0:10:27.07:0,27,313 0/0:7,0:7:21.05:0,21,232 0/0:22,0:22:54.17:0,54,696 0/0:7,0:7:18.06:0,18,226 0/0:12,0:12:30.08:0,30,387 0/0:13,0:13:30.09:0,30,381 0/0:5,0:5:15.04:0,15,170 0/0:9,0:9:27.07:0,27,300 0/1:5,2:7:37.66:38,0,122 0/0:13,0:13:36.10:0,36,429 0/0:6,0:6:18.06:0,18,223 0/1:12,11:23:99:312,0,308 0/0:6,0:6:18.05:0,18,213 0/0:3,0:3:9.01:0,9,94 0/1:3,3:6:32.74:83,0,33 0/0:5,0:5:15.04:0,15,169 0/1:2,3:6:59.73:89,0,60 1/1:0,6:6:18.05:213,18,0 0/0:10,0:10:27.08:0,27,321 0/0:7,0:7:21.06:0,21,243 0/0:3,0:3:9.03:0,9,111 0/1:3,3:6:66.73:89,0,67 1 9078346 . G A 644.33 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.107;DP=2035;Dels=0.00;FS=3.519;HRun=4;HaplotypeScore=0.9988;InbreedingCoeff=-0.0244;MQ=59.02;MQ0=0;MQRankSum=1.333;QD=8.37;ReadPosRankSum=0.422 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,111,1306 0/0:43,0:43:99:0,111,1387 0/0:37,0:37:93.27:0,93,1133 0/0:73,0:73:99:0,211,2667 0/0:60,0:60:99:0,175,2185 0/0:37,0:37:99:0,102,1326 0/0:39,0:39:99:0,111,1351 0/0:48,0:48:99:0,129,1634 0/0:41,0:41:99:0,114,1324 0/0:50,0:50:99:0,132,1533 0/0:42,0:42:99:0,111,1316 0/0:23,0:24:69.20:0,69,799 0/0:34,0:34:93.28:0,93,1143 0/0:44,0:44:99:0,123,1446 0/0:125,0:126:99:0,316,3748 0/0:40,0:40:99:0,114,1324 0/0:28,0:28:78.20:0,78,880 0/0:26,0:26:72.21:0,72,857 0/0:68,0:68:99:0,180,2095 0/0:74,0:74:99:0,178,2194 0/0:61,0:61:99:0,153,1819 0/0:50,0:50:99:0,135,1567 0/0:104,0:104:99:0,301,3791 0/0:48,0:48:99:0,132,1692 0/0:46,0:46:99:0,126,1593 0/0:38,0:38:99:0,105,1319 0/1:25,9:34:99:206,0,674 0/0:50,0:50:99:0,138,1635 0/1:24,19:43:99:501,0,642 0/0:49,0:49:99:0,135,1601 0/0:48,0:48:99:0,120,1440 0/0:66,0:66:99:0,183,2114 0/0:38,0:38:99:0,99,1173 0/0:35,0:35:99:0,102,1168 0/0:44,0:44:99:0,117,1392 0/0:36,0:36:93.22:0,93,1079 0/0:66,0:67:99:0,174,2003 0/0:37,0:37:99:0,102,1163 0/0:43,0:43:99:0,117,1358 0/0:44,0:44:99:0,117,1386 0/0:33,0:33:93.24:0,93,1075 0/0:48,0:48:99:0,135,1561 1 9085065 . G T 83.20 . AC=4;AF=0.048;AN=84;BaseQRankSum=-13.430;DP=1739;Dels=0.00;FS=392.088;HRun=2;HaplotypeScore=2.2579;InbreedingCoeff=-0.0877;MQ=58.45;MQ0=0;MQRankSum=-0.415;QD=0.59;ReadPosRankSum=-8.431 GT:AD:DP:GQ:PL 0/1:20,7:27:43.62:44,0,392 0/0:28,7:35:11.76:0,12,604 0/0:30,4:34:39.96:0,40,831 0/0:83,13:96:99:0,164,2634 0/0:72,14:86:50.73:0,51,2137 0/0:50,5:55:27.65:0,28,1384 0/0:44,3:48:99:0,105,1345 0/0:39,7:46:84.44:0,84,1277 0/0:18,6:24:2.43:1,0,456 0/0:27,1:28:69.18:0,69,844 0/0:20,3:23:33.48:0,33,659 0/0:16,3:19:35.98:0,36,438 0/0:21,2:23:2.90:0,0,492 0/0:23,2:25:29.50:0,30,642 0/0:98,15:113:73.98:0,74,2590 0/0:33,5:38:13:0,13,860 0/0:39,4:43:43.15:0,43,1121 0/0:29,6:35:6.54:0,7,765 0/0:36,6:42:40.19:0,40,1007 0/0:54,3:57:99:0,135,1656 0/0:49,4:53:99:0,100,1416 0/0:41,7:49:49.88:0,50,946 0/0:69,8:77:99:0,109,2075 0/0:46,4:50:99:0,105,1377 0/0:43,5:48:77.59:0,78,1271 0/0:30,5:35:47.46:0,47,823 0/1:23,8:31:13.56:14,0,465 0/1:22,7:29:50.02:50,0,482 0/0:13,2:15:2.60:1,0,378 0/0:26,5:31:35.53:0,36,736 0/0:22,3:25:20.86:0,21,654 0/0:57,7:64:60.17:0,60,1375 0/0:40,2:42:92.26:0,92,1032 0/0:21,1:23:24.67:0,25,627 0/0:22,4:26:25.47:0,25,575 0/0:33,3:36:0.60:8,0,857 0/1:43,11:54:57.05:57,0,1109 0/0:32,5:37:57.57:0,58,967 0/0:23,3:26:48.14:0,48,574 0/0:35,2:37:60.54:0,61,980 0/0:26,3:29:40.48:0,40,695 0/0:24,1:25:54.06:0,54,628 1 9307033 . G A 19750.85 . 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T C 12564.26 . 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C G 758.56 . 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A G 263.64 . 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G A 2161.04 . 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C T 1324.23 . 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C T 1643.24 . 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T C 23193.52 . 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T G 246.18 . 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C T 2975.02 . 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T G 67.17 . 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T C 10379.55 . 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A G 4845.50 . AC=3;AF=0.036;AN=84;BaseQRankSum=15.857;DP=2708;Dels=0.00;FS=0.649;HRun=1;HaplotypeScore=1.7842;InbreedingCoeff=0.6543;MQ=59.46;MQ0=0;MQRankSum=-0.172;QD=24.72;ReadPosRankSum=0.375 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,147,1809 0/0:49,0:49:99:0,141,1715 0/0:62,0:62:99:0,175,2125 0/1:58,49:107:99:1418,0,1641 1/1:0,89:89:99:3428,256,0 0/0:83,0:83:99:0,223,2846 0/0:71,0:71:99:0,193,2390 0/0:67,0:67:99:0,181,2285 0/0:62,0:62:99:0,171,2022 0/0:47,0:47:99:0,129,1540 0/0:43,0:43:99:0,117,1422 0/0:64,0:65:99:0,172,2087 0/0:39,0:39:96.29:0,96,1174 0/0:58,0:58:99:0,156,1908 0/0:163,1:164:99:0,424,5107 0/0:50,0:50:99:0,132,1617 0/0:65,0:65:99:0,181,2190 0/0:58,0:58:99:0,153,1856 0/0:65,0:65:99:0,171,2088 0/0:89,0:89:99:0,238,2889 0/0:64,1:65:99:0,166,2022 0/0:36,0:37:99:0,99,1155 0/0:97,0:97:99:0,241,3011 0/0:84,0:84:99:0,220,2680 0/0:82,0:82:99:0,217,2707 0/0:75,0:75:99:0,199,2489 0/0:42,0:42:99:0,123,1455 0/0:58,0:58:99:0,159,1903 0/0:43,0:43:99:0,123,1477 0/0:44,0:44:99:0,117,1426 0/0:55,0:55:99:0,150,1818 0/0:87,0:87:99:0,238,2969 0/0:51,0:53:99:0,141,1682 0/0:49,0:49:99:0,138,1657 0/0:50,0:50:99:0,132,1598 0/0:50,0:50:99:0,129,1584 0/0:83,0:83:99:0,214,2645 0/0:49,0:49:99:0,141,1720 0/0:53,0:53:99:0,153,1848 0/0:62,0:62:99:0,178,2136 0/0:42,0:42:99:0,114,1398 0/0:59,0:60:99:0,156,1859 1 11188142 . C T 1292.46 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.310;DP=4803;DS;Dels=0.00;FS=2.826;HRun=1;HaplotypeScore=3.4880;InbreedingCoeff=-0.0120;MQ=59.08;MQ0=2;MQRankSum=-0.354;QD=17.95;ReadPosRankSum=-0.131 GT:AD:DP:GQ:PL 0/0:108,0:108:99:0,292,3359 0/0:78,0:78:99:0,217,2485 0/0:82,0:84:99:0,223,2635 0/0:207,0:208:99:0,511,6440 0/0:195,0:196:99:0,517,6523 0/0:158,0:159:99:0,388,4889 0/0:152,0:156:99:0,373,4823 0/0:150,0:151:99:0,409,5045 0/0:74,0:74:99:0,202,2415 0/0:77,0:78:99:0,205,2433 0/0:81,0:81:99:0,217,2489 0/0:81,0:81:99:0,219,2475 0/1:23,49:72:99:1339,0,407 0/0:88,0:88:99:0,238,2672 0/0:217,0:219:99:0,550,6406 0/0:81,0:83:99:0,220,2546 0/0:79,0:79:99:0,223,2572 0/0:83,0:83:99:0,217,2517 0/0:139,0:139:99:0,367,4312 0/0:188,0:189:99:0,502,5880 0/0:148,0:148:99:0,355,4225 0/0:95,0:97:99:0,256,2890 0/0:212,0:214:99:0,524,6672 0/0:134,1:137:99:0,307,4257 0/0:178,0:180:99:0,445,5629 0/0:139,0:139:99:0,376,4632 0/0:75,0:76:99:0,199,2333 0/0:95,1:96:99:0,241,2748 0/0:82,0:82:99:0,211,2514 0/0:76,0:79:99:0,198,2262 0/0:75,0:76:99:0,199,2323 0/0:174,0:175:99:0,445,5241 0/0:90,0:91:99:0,234,2660 0/0:81,0:82:99:0,217,2410 0/0:104,0:105:99:0,280,3224 0/0:82,0:82:99:0,229,2670 0/0:122,0:122:99:0,310,3614 0/0:91,0:92:99:0,241,2774 0/0:70,0:70:99:0,189,2198 0/0:78,0:80:99:0,220,2566 0/0:85,0:86:99:0,232,2689 0/0:86,0:88:99:0,220,2511 1 11188155 . G A 67.09 . AC=3;AF=0.036;AN=84;BaseQRankSum=-24.198;DP=5949;DS;Dels=0.00;FS=763.413;HRun=2;HaplotypeScore=3.2993;InbreedingCoeff=-0.0490;MQ=59.15;MQ0=2;MQRankSum=-0.056;QD=0.14;ReadPosRankSum=-18.304 GT:AD:DP:GQ:PL 0/0:103,24:127:99:0,140,2451 0/0:83,24:107:83.91:0,84,1966 0/0:82,13:95:99:0,129,2079 0/0:186,64:250:99:0,248,4574 0/0:187,42:231:99:0,348,5122 0/0:165,34:200:99:0,312,4205 0/0:158,36:196:99:0,230,4102 0/0:157,30:187:99:0,193,3733 0/0:93,22:115:99:0,172,2287 0/0:83,23:106:99:0,106,2064 0/1:77,23:100:18.26:18,0,2055 0/0:83,24:107:22.90:0,23,1875 0/0:67,21:88:99:0,137,1587 0/0:95,16:111:99:0,165,2456 0/1:174,75:250:67.80:68,0,3652 0/0:82,20:102:94.56:0,95,1931 0/0:77,26:103:95.12:0,95,1835 0/0:82,15:97:99:0,109,1880 0/0:130,48:178:99:0,125,3006 0/0:214,29:243:99:0,383,5424 0/0:117,49:167:51.19:0,51,2707 0/0:104,29:133:78.79:0,79,2313 0/0:204,45:250:99:0,361,5021 0/0:136,16:152:99:0,238,3489 0/0:182,33:215:99:0,312,4475 0/0:139,30:170:99:0,206,3513 0/0:67,14:81:99:0,110,1605 0/0:98,20:119:99:0,150,2325 0/0:76,13:89:99:0,112,1871 0/0:86,32:118:99:0,103,1924 0/0:70,23:93:79.42:0,79,1717 0/0:186,26:212:99:0,249,4529 0/0:109,21:130:99:0,103,2320 0/0:79,28:107:5.35:0,5,1741 0/0:92,23:115:99:0,143,2346 0/0:93,23:117:73.52:0,74,1905 0/0:103,41:144:1.49:4,0,2243 0/0:97,16:113:78.23:0,78,2202 0/1:82,31:113:54.60:55,0,1745 0/0:89,25:114:56.37:0,56,1985 0/0:79,14:95:77.32:0,77,1799 0/0:81,28:109:99:0,118,1980 1 11259343 . T G 442.46 . AC=7;AF=0.083;AN=84;BaseQRankSum=-25.551;DP=2555;Dels=0.00;FS=840.127;HRun=4;HaplotypeScore=2.1581;InbreedingCoeff=-0.0968;MQ=59.03;MQ0=0;MQRankSum=-0.384;QD=1.34;ReadPosRankSum=-12.197 GT:AD:DP:GQ:PL 0/0:32,9:41:63.59:0,64,975 0/0:33,19:52:15.61:0,16,985 0/1:29,19:48:60.03:60,0,867 0/0:79,37:116:99:0,131,2579 0/0:62,45:107:30.53:0,31,1974 0/0:58,27:86:99:0,144,2025 0/0:47,25:72:63.41:0,63,1463 0/0:67,29:97:99:0,142,2245 0/0:29,11:40:5.57:0,6,921 0/1:26,17:43:53.26:53,0,751 0/1:28,17:45:80.76:81,0,877 0/0:38,18:56:55.21:0,55,1239 0/0:30,10:40:39.58:0,40,837 0/0:35,12:48:79.58:0,80,1133 0/0:106,43:151:57.46:0,57,3248 0/0:26,15:41:49.56:0,50,848 0/0:32,16:48:13.11:0,13,1004 0/0:33,15:48:58.57:0,59,1091 0/1:39,26:66:99:177,0,1124 0/0:45,21:66:48.15:0,48,1355 0/0:38,27:65:36.33:0,36,1146 0/0:35,17:52:50.88:0,51,1040 0/0:78,43:121:33.16:0,33,2328 0/0:55,21:76:99:0,133,1879 0/0:54,33:87:99:0,108,1869 0/0:47,29:76:14.99:0,15,1439 0/0:24,14:38:32.34:0,32,651 0/0:40,17:57:61.22:0,61,1292 0/0:35,10:45:26.31:0,26,1060 0/0:36,21:57:63.88:0,64,1168 0/0:35,14:49:99:0,102,1187 0/0:43,19:63:73.10:0,73,1399 0/0:21,17:38:35.70:0,36,642 0/0:22,16:39:16.36:0,16,569 0/1:25,15:40:51:51,0,639 0/0:55,15:71:78.96:0,79,1753 0/0:32,21:53:73.54:0,74,1044 0/1:29,20:49:85.34:85,0,838 0/0:27,19:46:24.14:0,24,889 0/0:34,15:49:11.74:0,12,1039 0/1:21,17:39:49.08:49,0,673 0/0:20,14:34:38.46:0,38,645 1 11264717 . T C 249.68 . AC=7;AF=0.083;AN=84;BaseQRankSum=-14.140;DP=1511;Dels=0.00;FS=203.257;HRun=2;HaplotypeScore=1.0021;InbreedingCoeff=-0.1009;MQ=58.59;MQ0=0;MQRankSum=-0.307;QD=1.36;ReadPosRankSum=-10.210 GT:AD:DP:GQ:PL 0/0:17,7:24:48.12:0,48,563 0/0:22,11:33:31.47:0,31,609 0/1:15,12:27:49.30:49,0,307 0/0:43,23:66:32.52:0,33,1225 0/0:34,24:58:66.65:0,67,1094 0/0:28,20:48:62:0,62,753 0/0:43,3:46:81.24:0,81,974 0/0:33,12:45:41.53:0,42,773 0/1:14,14:28:57.39:57,0,315 0/0:22,7:29:57.16:0,57,656 0/1:5,12:17:78.87:79,0,138 0/0:19,13:33:51.15:0,51,607 0/0:11,3:14:30.08:0,30,346 0/1:17,10:27:14.16:14,0,380 0/0:57,8:65:99:0,135,1585 0/1:7,14:22:41.27:41,0,94 0/0:24,12:36:60.13:0,60,675 0/0:21,13:34:54.09:0,54,589 0/0:17,13:30:22.64:0,23,469 0/0:44,22:66:68.25:0,68,970 0/0:30,23:54:26.96:0,27,873 0/0:17,7:24:30.07:0,30,330 0/0:50,24:74:99:0,129,1467 0/0:25,19:44:1.18:0,1,766 0/0:28,11:39:72.15:0,72,808 0/0:24,14:38:31.51:0,32,631 0/0:15,8:23:42.12:0,42,495 0/0:17,10:27:14.53:0,15,467 0/0:19,4:24:48.15:0,48,572 0/0:20,6:26:37.67:0,38,447 0/0:22,15:37:42.10:0,42,481 0/0:48,18:66:32.34:0,32,1134 0/0:33,10:43:87.22:0,87,989 0/0:17,7:24:45.13:0,45,519 0/0:16,10:26:42.12:0,42,497 0/0:15,11:26:34.65:0,35,383 0/1:19,15:34:99:109,0,370 0/0:22,7:29:60.17:0,60,706 0/1:17,12:29:9.11:9,0,445 0/0:13,12:25:9.45:0,9,369 0/0:17,9:27:42.11:0,42,478 0/0:13,9:23:4.38:0,4,255 1 11264717 . T TC 202.07 . AC=6;AF=0.071;AN=84;BaseQRankSum=4.426;DP=1623;FS=328.057;HRun=2;HaplotypeScore=145.3047;InbreedingCoeff=-0.1085;MQ=58.47;MQ0=0;MQRankSum=-1.086;QD=0.89;ReadPosRankSum=-14.910 GT:AD:DP:GQ:PL 0/0:27,0:27:48.07:0,48,560 0/0:36,0:36:43.97:0,44,575 0/1:28,0:28:15.33:15,0,429 0/0:66,0:66:1.95:2,0,1089 0/0:63,0:63:75.21:0,75,1185 0/0:54,0:48:9.42:0,9,687 0/0:43,13:53:70.70:0,71,941 0/0:47,0:46:29.66:0,30,724 0/1:30,0:30:74.72:75,0,393 0/0:32,0:32:38.10:0,38,598 0/1:21,0:21:43.23:43,0,202 0/0:32,0:32:60.17:0,60,720 0/0:16,0:16:13.06:0,13,335 0/0:29,0:29:10.07:0,10,346 0/1:60,24:84:30.64:31,0,1249 0/1:23,0:23:22.20:22,0,162 0/0:38,0:38:36.55:0,37,605 0/0:37,0:37:49.05:0,49,617 0/0:34,0:34:0.20:0,0,434 0/0:70,0:70:96.24:0,96,1248 0/0:60,0:60:12.62:0,13,921 0/0:26,0:26:30.07:0,30,355 0/0:76,0:76:99:0,137,1599 0/0:45,0:44:14.22:0,14,799 0/0:39,0:37:63.12:0,63,742 0/0:38,0:38:67.73:0,68,743 0/0:25,0:25:42.12:0,42,509 0/0:30,0:30:16.19:0,16,457 0/0:26,0:26:42.11:0,42,493 0/0:27,0:27:17.01:0,17,510 0/0:37,0:37:42.14:0,42,533 0/0:71,0:71:80.81:0,81,1352 0/0:45,0:45:69.23:0,69,832 0/0:23,0:23:37.95:0,38,474 0/0:27,0:27:25.13:0,25,426 0/0:28,0:28:15.98:0,16,488 0/1:40,0:40:99:127,0,428 0/0:29,0:29:53.19:0,53,705 0/0:31,0:31:5.06:0,5,490 0/0:27,0:27:38.87:0,39,434 0/0:27,0:27:35.99:0,36,410 0/0:23,0:23:0.20:0,0,365 1 11589911 . G A 7424.31 . AC=12;AF=0.143;AN=84;BaseQRankSum=6.801;DP=2084;Dels=0.00;FS=3.238;HRun=0;HaplotypeScore=1.2285;InbreedingCoeff=0.0278;MQ=59.00;MQ0=0;MQRankSum=2.154;QD=13.83;ReadPosRankSum=1.925 GT:AD:DP:GQ:PL 0/0:33,0:33:96.27:0,96,1106 0/1:17,22:40:99:646,0,426 1/1:0,31:31:84.25:1018,84,0 0/0:112,1:113:99:0,310,3657 0/0:103,0:103:99:0,298,3533 0/0:65,0:65:99:0,184,2179 0/0:64,0:64:99:0,159,1980 0/0:73,0:73:99:0,193,2278 0/0:35,0:35:96.23:0,96,1087 0/0:25,0:25:72.18:0,72,811 0/1:16,8:24:99:223,0,385 0/0:42,0:42:99:0,120,1352 0/0:38,0:38:99:0,102,1117 0/0:41,0:41:99:0,105,1181 0/0:98,2:100:99:0,259,2930 0/0:50,1:51:99:0,116,1659 0/1:16,19:35:99:542,0,392 0/1:21,16:37:99:415,0,599 0/1:32,24:56:99:700,0,720 0/0:75,0:75:99:0,198,2216 0/1:37,26:63:99:602,0,937 0/0:61,0:61:99:0,174,1987 0/1:72,49:121:99:1334,0,2064 0/0:48,0:48:99:0,132,1613 0/0:65,0:65:99:0,181,2192 0/0:52,0:52:99:0,147,1750 0/0:25,0:25:72.17:0,72,802 0/0:32,0:32:93.22:0,93,1038 0/0:28,0:28:78.18:0,78,865 0/0:38,0:38:99:0,108,1216 0/0:28,0:28:81.23:0,81,939 0/1:34,36:71:99:968,0,750 0/0:61,0:61:99:0,162,1820 0/0:33,0:33:93.23:0,93,1044 0/0:32,0:32:93.24:0,93,1071 0/1:11,19:30:99:543,0,218 0/0:45,0:45:99:0,117,1341 0/0:38,1:39:96.25:0,96,1080 0/0:29,0:29:84.21:0,84,938 0/0:42,0:42:99:0,120,1335 0/1:15,14:29:99:433,0,361 0/0:31,0:31:90.23:0,90,1006 1 11716066 . T C 1461.76 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.058;DP=4319;Dels=0.00;FS=27.947;HRun=1;HaplotypeScore=2.8151;InbreedingCoeff=-0.0244;MQ=57.37;MQ0=2;MQRankSum=-10.788;QD=7.31;ReadPosRankSum=-1.979 GT:AD:DP:GQ:PL 0/0:85,0:85:99:0,226,2813 0/0:85,0:85:99:0,241,2996 0/0:52,0:52:99:0,141,1733 0/0:216,0:216:99:0,602,7662 0/0:188,0:188:99:0,521,6605 0/0:154,0:154:99:0,397,5182 0/0:115,0:115:99:0,310,4020 0/0:143,0:143:99:0,391,4970 0/0:87,0:89:99:0,244,3019 0/0:72,0:72:99:0,193,2394 0/0:71,0:71:99:0,193,2403 0/0:82,2:84:99:0,196,2725 0/0:58,0:58:99:0,153,1904 0/0:68,0:68:99:0,193,2393 0/0:206,1:209:99:0,510,6730 0/0:78,0:78:99:0,226,2751 0/0:78,0:78:99:0,205,2547 0/0:56,0:56:99:0,159,1952 0/0:134,0:136:99:0,352,4463 0/0:150,0:152:99:0,412,5062 0/1:84,50:135:99:1029,0,2390 0/1:40,24:65:99:496,0,1243 0/0:203,1:205:99:0,512,6962 0/0:99,0:99:99:0,256,3311 0/0:135,0:135:99:0,370,4723 0/0:91,0:91:99:0,250,3162 0/0:66,0:66:99:0,178,2189 0/0:83,1:84:99:0,235,2939 0/0:72,1:73:99:0,196,2430 0/0:67,1:68:99:0,181,2230 0/0:84,0:84:99:0,220,2730 0/0:160,1:163:99:0,406,5144 0/0:91,0:91:99:0,250,3034 0/0:77,0:78:99:0,220,2691 0/0:74,0:75:99:0,208,2563 0/0:104,0:104:99:0,268,3338 0/0:135,0:136:99:0,364,4445 0/0:87,0:87:99:0,241,2986 0/0:79,0:79:99:0,217,2628 0/0:76,0:76:99:0,223,2740 0/0:46,0:46:99:0,123,1489 0/0:90,0:90:99:0,250,3097 1 11716067 . G A 1485.97 . 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C T 3113.33 . 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T G 89.70 . 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A G 104187.37 . 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G A 3024.07 . 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G A 895.77 . 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C T 58254.16 . AC=23;AF=0.274;AN=84;BaseQRankSum=5.430;DP=7027;DS;Dels=0.00;FS=2.462;HRun=0;HaplotypeScore=4.7449;InbreedingCoeff=0.1019;MQ=59.41;MQ0=0;MQRankSum=-0.041;QD=17.54;ReadPosRankSum=3.250 GT:AD:DP:GQ:PL 0/0:150,0:150:99:0,424,4891 0/0:155,0:155:99:0,406,4793 0/0:114,0:114:99:0,316,3605 0/0:248,1:249:99:0,672,8636 0/0:242,0:242:99:0,695,8694 0/0:250,0:250:99:0,674,8422 0/1:123,98:221:99:2681,0,3514 0/1:134,108:242:99:2922,0,3917 0/1:63,60:123:99:1706,0,1744 0/1:57,46:103:99:1251,0,1512 0/0:141,1:142:99:0,362,4522 0/0:114,0:114:99:0,328,3746 0/0:115,1:116:99:0,279,3528 0/1:79,65:144:99:1815,0,2047 0/0:250,0:250:99:0,680,7787 0/1:70,40:110:99:1074,0,1954 0/0:126,0:126:99:0,346,4091 0/1:44,57:102:99:1644,0,1100 1/1:1,242:244:99:7633,632,0 1/1:0,241:241:99:8064,671,0 0/1:143,107:250:99:2883,0,3895 1/1:0,155:155:99:5105,424,0 0/1:136,111:247:99:3101,0,4054 0/1:80,101:182:99:2878,0,2301 0/1:138,107:245:99:2913,0,4009 1/1:1,192:194:99:6383,489,0 0/0:108,0:108:99:0,298,3454 0/0:133,0:133:99:0,355,4146 0/1:60,39:99:99:1011,0,1674 0/0:133,0:133:99:0,382,4371 0/0:132,0:132:99:0,361,4267 0/0:241,0:241:99:0,644,7498 0/1:127,84:211:99:2251,0,3397 0/0:128,0:128:99:0,361,4135 0/1:55,48:103:99:1328,0,1483 0/0:148,0:148:99:0,412,4796 0/0:243,0:244:99:0,662,7738 0/0:139,0:139:99:0,388,4501 0/1:52,54:106:99:1612,0,1458 0/0:131,0:131:99:0,355,4117 0/0:114,1:115:99:0,270,3448 0/0:143,1:145:99:0,406,4767 1 12026355 . A C 1166.06 . 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G T 1253.46 . 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T G 8303.97 . 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G A 2849.63 . 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A T 22727.95 . 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A C 112999.49 . AC=65;AF=0.774;AN=84;BaseQRankSum=33.021;DP=4342;DS;Dels=0.00;FS=15.257;HRun=2;HaplotypeScore=3.2571;InbreedingCoeff=-0.0202;MQ=59.25;MQ0=0;MQRankSum=0.409;QD=27.71;ReadPosRankSum=5.985 GT:AD:DP:GQ:PL 0/1:32,35:67:99:1026,0,799 0/1:34,34:68:99:985,0,818 1/1:0,63:63:99:2132,169,0 1/1:0,184:185:99:6456,482,0 1/1:0,167:167:99:5772,424,0 1/1:1,144:145:99:5009,346,0 1/1:0,116:116:99:4023,304,0 1/1:0,138:139:99:4826,358,0 0/1:38,35:73:99:983,0,1050 0/1:49,32:81:99:906,0,1246 0/1:31,26:57:99:723,0,857 0/0:92,0:92:99:0,253,2986 0/1:38,43:81:99:1168,0,1004 0/1:33,37:70:99:1076,0,875 1/1:0,226:226:99:7520,593,0 0/1:38,36:74:99:1032,0,997 1/1:0,63:63:99:2226,178,0 1/1:0,58:58:99:2113,166,0 1/1:0,151:151:99:4894,388,0 1/1:0,216:216:99:7047,551,0 0/0:166,6:172:99:0,426,5032 0/1:72,53:125:99:1441,0,1856 1/1:0,201:201:99:7042,527,0 1/1:0,95:95:99:3356,250,0 1/1:2,127:129:99:4349,296,0 1/1:0,87:87:99:3006,223,0 1/1:0,64:64:99:2209,175,0 1/1:0,69:69:99:2286,181,0 0/1:33,25:59:99:697,0,863 1/1:0,59:59:99:2071,163,0 1/1:0,61:61:99:2185,172,0 0/1:101,90:191:99:2353,0,2664 1/1:1,102:103:99:3425,243,0 1/1:0,74:74:99:2632,208,0 1/1:0,86:86:99:2859,220,0 1/1:0,80:80:99:2650,208,0 0/1:59,77:136:99:2186,0,1466 0/1:39,43:82:99:1253,0,1010 0/1:41,34:75:99:1028,0,1141 1/1:0,73:73:99:2468,196,0 0/1:24,32:56:99:945,0,577 1/1:0,73:73:99:2643,211,0 1 12835168 . C A 2606.57 . 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A C 27615.10 . 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C T 552.95 . 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G A 759.95 . 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T G 38009.40 . 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T C 52170.96 . 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G A 5691.86 . 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G A 698.35 . 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G A 1879 . 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C A 1293.66 . 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C G 1330 . 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G C 1326.03 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.644;DP=6215;DS;Dels=0.00;FS=1.219;HRun=1;HaplotypeScore=3.4510;InbreedingCoeff=-0.0120;MQ=59.14;MQ0=0;MQRankSum=-0.334;QD=11.84;ReadPosRankSum=1.261 GT:AD:DP:GQ:PL 0/0:128,0:128:99:0,343,4340 0/0:111,0:111:99:0,298,3754 0/0:117,0:117:99:0,310,3945 0/0:203,0:203:99:0,557,7475 0/0:169,0:169:99:0,464,6284 0/0:180,0:180:99:0,503,6748 0/0:171,0:171:99:0,457,6217 0/0:153,0:153:99:0,397,5332 0/0:155,0:155:99:0,409,5212 0/0:115,0:115:99:0,319,4025 0/0:129,0:129:99:0,361,4589 0/0:115,0:115:99:0,313,3968 0/1:56,56:112:99:1372,0,1592 0/0:146,0:146:99:0,403,5096 0/0:247,0:249:99:0,674,8620 0/0:132,0:132:99:0,376,4744 0/0:130,0:130:99:0,364,4545 0/0:120,0:120:99:0,331,4159 0/0:207,0:209:99:0,548,6913 0/0:215,0:215:99:0,581,7346 0/0:228,0:229:99:0,584,7360 0/0:141,0:141:99:0,373,4743 0/0:210,0:210:99:0,578,7886 0/0:127,0:127:99:0,349,4724 0/0:134,0:134:99:0,373,5030 0/0:117,0:117:99:0,292,3982 0/0:101,0:101:99:0,265,3394 0/0:129,0:129:99:0,346,4380 0/0:113,0:113:99:0,325,4052 0/0:133,0:133:99:0,340,4360 0/0:108,0:108:99:0,286,3602 0/0:193,0:193:99:0,500,6359 0/0:156,0:156:99:0,415,5317 0/0:132,0:134:99:0,385,4808 0/0:118,0:118:99:0,322,4109 0/0:128,0:129:99:0,337,4297 0/0:212,0:213:99:0,533,6774 0/0:130,0:130:99:0,349,4432 0/0:130,0:130:99:0,352,4419 0/0:144,0:144:99:0,397,5013 0/0:127,0:127:99:0,352,4422 0/0:139,0:139:99:0,385,4887 1 15808767 . G A 19937.60 . 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G A 39094.20 . 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A G 227304.98 . AC=84;AF=1.000;AN=84;BaseQRankSum=-0.857;DP=6986;DS;Dels=0.00;FS=1.819;HRun=1;HaplotypeScore=4.2614;InbreedingCoeff=-0.0000;MQ=57.11;MQ0=7;MQRankSum=0.911;QD=32.54;ReadPosRankSum=0.273 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4016,346,0 1/1:0,132:132:99:4180,373,0 1/1:0,111:112:99:3549,310,0 1/1:0,248:250:99:8515,701,0 1/1:0,250:250:99:8782,719,0 1/1:0,248:248:99:8428,689,0 1/1:0,216:216:99:7305,608,0 1/1:1,245:247:99:8255,647,0 1/1:0,140:142:99:4445,391,0 1/1:0,127:127:99:4255,373,0 1/1:0,115:115:99:3708,334,0 1/1:0,104:104:99:3399,307,0 1/1:0,99:99:99:3280,292,0 1/1:0,131:131:99:4314,388,0 1/1:0,248:250:99:7835,704,0 1/1:0,134:134:99:4061,370,0 1/1:0,132:132:99:4413,385,0 1/1:0,132:133:99:4143,370,0 1/1:1,249:250:99:7881,670,0 1/1:0,248:250:99:7810,668,0 1/1:0,224:226:99:7289,638,0 1/1:0,158:160:99:5039,448,0 1/1:1,248:250:99:8700,689,0 1/1:0,222:222:99:7424,608,0 1/1:1,246:247:99:8276,648,0 1/1:0,218:218:99:7365,608,0 1/1:0,101:102:99:3311,292,0 1/1:0,124:125:99:3994,355,0 1/1:0,97:97:99:3242,283,0 1/1:0,135:136:99:4306,382,0 1/1:0,113:113:99:3776,328,0 1/1:0,222:222:99:7122,614,0 1/1:1,181:182:99:5625,461,0 1/1:1,121:122:99:3892,349,0 1/1:0,126:126:99:4129,358,0 1/1:0,159:159:99:5113,448,0 1/1:0,208:210:99:6391,562,0 1/1:0,130:130:99:4188,367,0 1/1:0,124:125:99:3956,349,0 1/1:0,116:117:99:3833,337,0 1/1:0,101:101:99:3254,292,0 1/1:0,142:142:99:4506,388,0 1 15892415 . A C 36830.34 . AC=13;AF=0.155;AN=84;BaseQRankSum=14.732;DP=9296;DS;Dels=0.00;FS=34.651;HRun=0;HaplotypeScore=2.8869;InbreedingCoeff=-0.0011;MQ=59.65;MQ0=0;MQRankSum=-0.836;QD=14.05;ReadPosRankSum=-1.292 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5880,469,0 0/1:128,84:213:99:2276,0,3563 0/0:212,0:212:99:0,569,7008 0/0:250,0:250:99:0,710,8740 0/0:249,0:250:99:0,710,8847 0/1:149,100:250:99:3077,0,4680 0/0:248,1:249:99:0,704,8829 0/1:153,97:250:99:2961,0,4692 0/1:94,86:180:99:2416,0,2735 0/0:220,0:220:99:0,620,7530 0/1:108,75:184:99:2027,0,3304 0/0:191,0:191:99:0,530,6520 0/0:158,0:159:99:0,421,5194 0/0:214,0:214:99:0,578,7148 0/1:147,102:250:99:2743,0,4190 0/1:100,84:184:99:2275,0,2912 0/0:219,0:220:99:0,608,7513 0/0:213,0:213:99:0,605,7370 0/1:137,112:249:99:3225,0,3951 0/1:133,117:250:99:3385,0,3846 0/0:247,1:249:99:0,689,8440 0/0:215,0:215:99:0,581,7102 0/0:250,0:250:99:0,710,8790 0/0:250,0:250:99:0,680,8544 0/1:128,122:250:99:3828,0,3914 0/0:249,0:250:99:0,692,8658 0/0:162,0:162:99:0,433,5422 0/0:206,0:206:99:0,575,7056 0/1:94,90:184:99:2739,0,2721 0/0:218,0:218:99:0,593,7311 0/0:185,1:186:99:0,491,6327 0/0:248,0:250:99:0,662,8208 0/0:233,0:233:99:0,626,7750 0/0:219,0:220:99:0,590,7363 0/0:231,0:231:99:0,626,7824 0/0:247,3:250:99:0,652,8305 0/0:249,0:250:99:0,683,8367 0/0:218,0:218:99:0,602,7345 0/0:197,0:197:99:0,551,6759 0/0:249,0:250:99:0,674,8326 0/0:199,0:199:99:0,548,6757 0/0:209,2:211:99:0,499,6904 1 15953220 . C CT 1476.51 . AC=21;AF=0.250;AN=84;BaseQRankSum=6.781;DP=5995;DS;FS=3200.000;HRun=2;HaplotypeScore=360.5828;InbreedingCoeff=-0.3481;MQ=59.44;MQ0=1;MQRankSum=3.260;QD=0.52;ReadPosRankSum=-31.018 GT:AD:DP:GQ:PL 0/1:136,1:137:39.02:39,0,2730 0/1:123,0:123:99:111,0,2513 0/1:110,0:110:41.05:41,0,2375 0/1:210,0:209:69.19:69,0,4938 0/0:203,0:203:26.01:0,26,4802 0/1:200,0:195:99:132,0,4498 0/0:187,0:182:99:0,128,4792 0/1:195,0:192:37.06:37,0,4381 0/0:137,1:138:99:0,173,3560 0/1:100,0:100:20.15:20,0,2069 0/1:120,0:120:83.95:84,0,2530 0/0:95,0:95:57.91:0,58,2330 0/1:93,0:93:16.09:16,0,2005 0/1:124,0:124:99:115,0,2922 0/0:245,2:246:66.84:0,67,6119 0/1:99,0:99:99:147,0,2081 0/0:138,0:138:21.38:0,21,3077 0/1:151,0:151:99:124,0,3259 0/0:145,0:145:99:0,172,3613 0/0:169,1:170:99:0,148,3779 0/1:142,0:141:50.11:50,0,3256 0/0:98,0:98:61.53:0,62,2144 0/0:198,0:198:99:0,107,4765 0/0:174,0:173:99:0,126,4495 0/0:209,0:204:69.17:0,69,4890 0/0:180,0:171:2.29:2,0,3977 0/1:113,0:113:70.34:70,0,2280 0/1:124,2:126:58.49:58,0,2856 0/1:118,1:119:45.38:45,0,2512 0/0:133,0:133:99:0,124,3210 0/0:127,0:127:99:0,134,3037 0/0:162,0:162:99:0,181,3752 0/0:90,0:90:15.86:0,16,1842 0/1:125,0:125:39.14:39,0,2819 0/1:130,0:130:99:149,0,2909 0/1:138,0:138:92.90:93,0,2900 0/0:135,0:135:80.37:0,80,3185 0/1:123,0:123:97.82:98,0,2384 0/0:115,0:115:11.63:0,12,2221 0/0:133,0:133:31.62:0,32,2834 0/0:104,0:104:14.53:0,15,1990 0/1:136,0:136:99:119,0,2714 1 15953221 . TTGAAAGATGGGGACGTTGTGA T 3543.13 . AC=26;AF=0.310;AN=84;BaseQRankSum=-0.508;DP=5911;DS;FS=3200.000;HRun=0;HaplotypeScore=2032.1572;InbreedingCoeff=-0.4468;MQ=59.44;MQ0=1;MQRankSum=3.459;QD=1.02;ReadPosRankSum=-30.540 GT:AD:DP:GQ:PL 0/1:99,32:131:99:218,0,21327 0/1:124,0:124:99:144,0,19381 0/1:110,0:110:99:224,0,20124 0/1:207,0:206:99:193,0,39029 0/1:202,0:202:99:107,0,38847 0/1:198,0:193:99:211,0,35775 0/0:183,0:178:71.92:0,72,37941 0/1:194,0:191:97.51:98,0,36456 0/0:135,0:135:99:0,173,25443 0/1:100,0:100:99:161,0,16774 0/1:117,0:117:99:99,0,19692 0/1:91,0:91:28.22:28,0,17929 0/1:92,0:92:60.59:61,0,16306 0/1:123,0:123:99:131,0,22724 0/0:207,41:247:21.13:0,21,54685 0/1:96,0:96:99:163,0,17707 0/0:137,0:137:18.03:0,18,25986 0/1:146,0:146:99:178,0,25077 0/0:146,0:146:99:0,139,28948 0/0:172,0:172:99:0,137,31140 0/1:142,0:141:99:242,0,26589 0/0:95,0:95:79.76:0,80,18746 0/0:195,0:195:21.42:0,21,39951 0/0:176,0:175:48.55:0,49,34706 0/0:209,0:204:23.70:0,24,38312 0/1:175,0:166:45.19:45,0,30688 0/1:111,0:111:99:141,0,18604 0/1:121,0:121:99:106,0,25013 0/1:115,0:115:99:160,0,19046 0/0:130,0:130:99:0,103,24714 0/0:125,0:125:99:0,111,22393 0/0:157,0:157:99:0,190,29478 0/0:90,0:90:22.25:0,22,15505 0/1:122,0:122:99:113,0,22823 0/1:127,0:127:99:266,0,21643 0/1:135,0:135:99:168,0,23460 0/1:136,0:136:1.40:1,0,25089 0/1:119,0:119:99:116,0,19425 0/0:114,0:114:23.71:0,24,18546 0/0:127,0:127:3.26:0,3,23263 0/1:103,0:103:29.24:29,0,15000 0/1:135,0:135:99:139,0,20737 1 15953222 . TGAAAGATGGGGACG T 2886.91 . AC=24;AF=0.286;AN=84;BaseQRankSum=-0.664;DP=5643;DS;FS=3200.000;HRun=0;HaplotypeScore=1377.0937;InbreedingCoeff=-0.4086;MQ=59.87;MQ0=1;MQRankSum=4.427;QD=0.94;ReadPosRankSum=-31.109 GT:AD:DP:GQ:PL 0/1:121,0:121:99:162,0,16627 0/1:115,0:115:99:144,0,15149 0/1:103,0:103:99:187,0,15736 0/1:205,0:204:99:171,0,30693 0/1:195,0:195:53.49:53,0,29513 0/1:186,0:181:99:205,0,27230 0/0:177,0:172:87.92:0,88,28804 0/1:191,0:188:85.45:85,0,28124 0/0:103,25:128:99:0,173,19560 0/1:93,0:93:99:133,0,13275 0/1:106,0:106:96.54:97,0,15081 0/1:88,0:88:25.20:25,0,13890 0/1:91,0:91:54.56:55,0,13019 0/1:122,0:122:99:105,0,18026 0/0:246,0:245:99:0,113,41765 0/1:90,0:90:99:163,0,13353 0/0:128,0:128:34.60:0,35,19508 0/1:140,0:140:99:121,0,19278 0/0:136,0:136:99:0,142,22241 0/0:123,45:168:99:0,140,23380 0/1:141,0:140:99:206,0,20717 0/0:90,0:90:91.45:0,91,14090 0/0:188,0:188:53.23:0,53,29859 0/0:173,0:172:48.61:0,49,26528 0/0:201,0:196:26.73:0,27,29552 0/1:165,0:156:45.18:45,0,23822 0/1:107,0:107:99:109,0,14478 0/1:92,28:120:75.58:76,0,18466 0/1:82,29:111:99:157,0,15099 0/0:123,0:123:99:0,109,19189 0/0:116,0:116:99:0,111,17125 0/0:150,0:150:99:0,199,23143 0/0:86,0:86:22.26:0,22,11655 0/1:114,0:114:99:110,0,17712 0/1:120,0:120:99:243,0,16890 0/1:126,0:126:99:165,0,18301 0/0:126,0:126:26.94:0,27,19408 0/1:110,0:110:99:115,0,14668 0/0:105,0:105:32.75:0,33,14519 0/0:123,0:123:34.50:0,35,17609 0/0:93,0:93:2.54:0,3,11850 0/1:126,0:126:99:139,0,16075 1 15953223 . G T 520.22 . AC=14;AF=0.167;AN=84;BaseQRankSum=-27.613;DP=5643;DS;Dels=0.04;FS=3200.000;HRun=2;HaplotypeScore=22.6517;InbreedingCoeff=-0.2132;MQ=59.87;MQ0=1;MQRankSum=-0.204;QD=0.34;ReadPosRankSum=-30.017 GT:AD:DP:GQ:PL 0/0:86,3:89:99:0,253,3176 0/1:83,32:115:99:102,0,2746 0/0:80,23:103:23.45:0,23,2588 0/0:152,53:205:99:0,113,5441 0/0:150,45:195:99:0,121,5467 0/0:137,49:186:70.40:0,70,4794 0/0:143,34:177:99:0,261,5276 0/0:142,49:191:99:0,228,4998 0/0:100,3:103:99:0,301,3787 0/1:67,26:93:20.22:20,0,2122 0/1:79,27:106:98.33:98,0,2603 0/0:70,18:88:80.90:0,81,2410 0/1:67,24:91:11.19:11,0,2165 0/0:90,32:122:80.60:0,81,2880 0/0:201,4:205:99:0,560,7229 0/1:66,24:90:99:108,0,2133 0/0:98,30:128:99:0,101,3296 0/1:100,40:140:50.15:50,0,3104 0/0:112,24:136:99:0,194,3908 0/0:118,5:123:99:0,340,4246 0/0:105,36:141:1.88:3,0,3358 0/0:67,23:90:74.24:0,74,2332 0/0:146,41:188:99:0,213,5526 0/0:135,38:173:99:0,188,4985 0/0:151,50:201:99:0,306,5455 0/0:121,44:165:99:0,197,4437 0/0:74,33:107:3.39:0,3,2369 0/0:89,3:92:99:0,265,3297 0/0:78,4:82:99:0,232,2870 0/0:95,28:123:99:0,159,3280 0/0:89,27:116:99:0,214,3157 0/0:111,38:150:99:0,256,3903 0/1:55,30:86:17.99:18,0,1818 0/1:89,25:114:38.25:38,0,2896 0/1:89,31:120:99:111,0,2938 0/1:91,35:126:11.49:11,0,2934 0/0:102,24:126:99:0,162,3302 0/1:76,34:110:23.22:23,0,2435 0/1:74,31:105:13.73:14,0,2317 0/0:89,34:123:70.10:0,70,2974 0/1:61,32:93:33.13:33,0,2045 0/1:85,41:126:30.22:30,0,2711 1 16042766 . T C 4231.49 . AC=13;AF=0.155;AN=84;BaseQRankSum=7.289;DP=980;Dels=0.00;FS=1.528;HRun=3;HaplotypeScore=0.5111;InbreedingCoeff=-0.0014;MQ=59.44;MQ0=0;MQRankSum=2.162;QD=14.90;ReadPosRankSum=-0.502 GT:AD:DP:GQ:PL 1/1:0,24:24:66.19:798,66,0 0/1:11,6:17:99:140,0,298 0/0:12,0:12:36.11:0,36,431 0/0:22,0:22:63.19:0,63,754 0/0:20,0:20:51.15:0,51,621 0/1:5,8:13:99:251,0,112 0/0:32,1:33:72.21:0,72,931 0/1:5,12:17:99:329,0,110 0/1:11,7:18:99:203,0,282 0/0:21,0:21:57.15:0,57,669 0/1:8,7:15:99:203,0,211 0/0:18,0:18:45.13:0,45,553 0/0:10,0:10:24.07:0,24,290 0/0:23,1:24:40.49:0,40,696 0/1:26,25:51:99:673,0,633 0/1:11,8:19:99:178,0,271 0/0:17,0:17:45.14:0,45,544 0/1:8,11:19:99:303,0,233 0/1:27,20:47:99:429,0,772 0/1:15,19:34:99:524,0,388 0/0:39,1:41:99:0,99,1192 0/0:26,0:26:66.20:0,66,808 0/0:39,0:39:93.29:0,93,1185 0/0:16,0:16:42.12:0,42,497 0/1:4,6:10:99:202,0,121 0/0:14,0:14:39.12:0,39,484 0/0:13,0:13:36.10:0,36,414 0/0:23,0:23:54.15:0,54,643 0/0:20,0:20:51.15:0,51,615 0/0:18,0:18:51.16:0,51,614 0/0:28,0:28:78.23:0,78,931 0/0:38,0:38:93.27:0,93,1121 0/0:33,0:33:87.24:0,87,1046 0/0:20,0:20:54.16:0,54,642 0/0:22,0:22:60.15:0,60,718 0/0:24,0:24:66.20:0,66,793 0/0:43,2:45:99:0,104,1261 0/0:23,0:23:60.16:0,60,714 0/0:29,0:29:84.24:0,84,981 0/0:19,1:20:51.14:0,51,610 0/0:8,0:8:21.06:0,21,251 0/0:19,0:19:48.15:0,48,607 1 16057083 . C T 549.45 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.186;DP=464;Dels=0.00;FS=2.576;HRun=0;HaplotypeScore=0.4560;InbreedingCoeff=-0.0296;MQ=59.04;MQ0=0;MQRankSum=0.882;QD=12.21;ReadPosRankSum=-0.229 GT:AD:DP:GQ:PL 0/0:8,0:8:21.07:0,21,257 0/0:8,0:8:21.05:0,21,243 0/0:10,0:10:24.07:0,24,290 0/0:19,0:19:57.18:0,57,713 0/0:7,0:7:21.06:0,21,268 0/0:16,0:16:39.13:0,39,528 0/0:7,0:7:18.06:0,18,237 0/0:13,0:13:36.11:0,36,467 0/0:8,0:8:24.08:0,24,301 0/0:7,0:7:21.06:0,21,254 0/0:4,0:4:12.04:0,12,147 0/0:5,0:5:15.04:0,15,173 0/0:7,0:7:18.06:0,18,226 0/0:6,0:6:18.05:0,18,206 0/1:15,18:33:99:469,0,372 0/0:14,0:14:42.11:0,42,480 0/1:6,6:12:99:143,0,116 0/0:5,0:5:15.02:0,15,166 0/0:22,0:22:66.18:0,66,777 0/0:20,0:20:60.19:0,60,732 0/0:23,0:23:66.17:0,66,771 0/0:13,0:13:33.09:0,33,384 0/0:12,0:12:36.11:0,36,454 0/0:13,0:13:30.09:0,30,377 0/0:9,0:9:24.08:0,24,319 0/0:5,0:5:15.05:0,15,202 0/0:9,0:9:24.07:0,24,287 0/0:15,0:15:42.13:0,42,502 0/0:12,0:12:33.10:0,33,392 0/0:9,0:9:27.08:0,27,314 0/0:9,0:9:21.06:0,21,254 0/0:13,0:13:39.12:0,39,462 0/0:15,0:15:42.12:0,42,491 0/0:8,0:8:21.07:0,21,259 0/0:9,0:9:24.06:0,24,272 0/0:7,0:7:15.05:0,15,192 0/0:17,0:17:48.13:0,48,562 0/0:5,0:6:15.04:0,15,169 0/0:7,0:7:21.06:0,21,249 0/0:11,0:11:30.09:0,30,354 0/0:4,0:4:12.04:0,12,143 0/0:7,0:7:18.05:0,18,215 1 16095046 . C T 629.84 . 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C T 47554.72 . 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C T 2711.89 . 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T A 1410.78 . 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C T 2844.76 . 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C T 2933.91 . 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G A 1074.30 . 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T C 152590.75 . 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C T 38075.81 . 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A G 39935.45 . 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T C 68630.94 . 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A G 33003.49 . 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C T 32535.20 . AC=59;AF=0.702;AN=84;BaseQRankSum=-11.370;DP=1968;Dels=0.00;FS=18.888;HRun=1;HaplotypeScore=1.7391;InbreedingCoeff=-0.1959;MQ=46.63;MQ0=49;MQRankSum=-15.456;QD=18.94;ReadPosRankSum=1.900 GT:AD:DP:GQ:PL 0/1:23,17:40:99:398,0,697 1/1:1,32:33:54.97:946,55,0 0/1:13,18:31:99:462,0,369 0/1:49,34:83:99:697,0,1466 1/1:0,64:64:99:1923,162,0 1/1:0,63:63:99:1948,162,0 1/1:0,45:45:99:1333,120,0 1/1:0,52:52:99:1551,135,0 0/1:15,24:39:99:569,0,409 0/1:22,16:38:99:362,0,663 0/1:20,19:39:99:520,0,601 1/1:0,41:41:99:1307,114,0 0/1:18,11:29:99:204,0,582 1/1:0,35:35:96.25:1113,96,0 0/0:147,0:147:99:0,400,5046 0/1:23,21:44:99:481,0,658 0/1:27,20:47:99:451,0,745 1/1:0,28:28:63.13:681,63,0 1/1:1,57:58:99:1731,128,0 1/1:0,58:58:99:1717,150,0 0/1:25,21:48:99:546,0,710 0/1:19,18:37:99:470,0,588 0/0:102,0:103:99:0,265,3529 1/1:0,35:35:81.21:986,81,0 1/1:0,42:42:99:1147,102,0 0/1:27,15:42:99:205,0,875 0/1:33,18:52:99:285,0,1034 0/1:18,15:33:99:384,0,514 0/1:13,35:48:99:862,0,317 1/1:0,40:40:99:1102,99,0 0/1:21,15:36:99:405,0,685 0/1:28,19:47:99:428,0,802 0/1:26,12:38:99:292,0,752 0/1:27,7:34:99:112,0,835 1/1:0,45:45:99:1278,111,0 0/1:38,18:56:99:338,0,1193 1/1:0,52:52:99:1407,126,0 0/1:20,18:38:99:478,0,476 1/1:0,32:32:72.15:784,72,0 1/1:0,37:37:93.19:1008,93,0 1/1:0,31:31:81.18:888,81,0 1/1:1,27:28:37.36:735,37,0 1 16456763 . C T 1135.19 . AC=3;AF=0.036;AN=84;BaseQRankSum=3.658;DP=2500;Dels=0.00;FS=4.369;HRun=0;HaplotypeScore=1.3795;InbreedingCoeff=-0.0370;MQ=59.09;MQ0=0;MQRankSum=0.973;QD=9.87;ReadPosRankSum=-0.596 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,123,1380 0/0:37,0:38:99:0,105,1200 0/0:42,0:42:99:0,114,1282 0/0:126,0:126:99:0,340,4098 0/0:128,0:128:99:0,334,4193 0/0:71,0:71:99:0,184,2239 0/0:64,0:64:99:0,172,2106 0/0:74,0:74:99:0,193,2446 0/1:26,18:44:99:461,0,624 0/0:43,0:43:99:0,111,1259 0/1:23,17:41:99:462,0,619 0/0:47,0:47:99:0,123,1409 0/0:39,0:39:99:0,102,1173 0/0:40,0:40:99:0,108,1238 0/0:134,0:135:99:0,337,3925 0/0:44,0:44:99:0,120,1378 0/0:33,0:33:93.25:0,93,1085 0/1:19,11:30:99:288,0,494 0/0:70,0:70:99:0,196,2231 0/0:88,0:88:99:0,238,2744 0/0:81,0:81:99:0,214,2393 0/0:41,0:41:99:0,111,1260 0/0:155,0:155:99:0,415,5140 0/0:71,0:72:99:0,193,2435 0/0:71,0:71:99:0,181,2253 0/0:67,0:67:99:0,187,2281 0/0:41,0:41:99:0,123,1405 0/0:63,0:63:99:0,159,1840 0/0:32,0:32:87.25:0,87,1022 0/0:36,0:36:99:0,99,1129 0/0:43,0:43:99:0,120,1377 0/0:77,0:77:99:0,193,2280 0/0:62,0:62:99:0,159,1833 0/0:43,0:43:99:0,108,1263 0/0:43,0:43:99:0,114,1249 0/0:41,0:41:99:0,105,1250 0/0:74,0:74:99:0,180,2121 0/0:37,0:37:99:0,105,1156 0/0:46,0:46:99:0,135,1540 0/0:47,0:47:99:0,132,1475 0/0:38,0:38:99:0,102,1146 0/0:48,0:48:99:0,135,1503 1 16456876 . T C 203.06 . 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G A 642.95 . 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C G 11819.77 . 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C T 25145.19 . 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A G 635.35 . 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G A 453.33 . 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T C 31.37 . 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A C 2687.99 . 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T G 6456.66 . 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T G 1446.61 . 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C T 35.42 . 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C T 2459.68 . 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C T 140.62 . AC=8;AF=0.154;AN=52;BaseQRankSum=0.882;DP=9852;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0344;InbreedingCoeff=-0.1231;MQ=2.01;MQ0=9797;MQRankSum=0.559;QD=0.08;ReadPosRankSum=0.857 GT:AD:DP:GQ:PL 0/0:206,20:226:3.01:0,3,33 ./. ./. ./. 0/0:232,18:250:3.01:0,3,33 ./. ./. ./. 0/0:203,25:228:6.02:0,6,67 0/0:179,53:232:3.01:0,3,33 0/0:235,1:236:9.02:0,9,96 ./. 0/0:222,23:245:3.01:0,3,33 0/0:198,20:218:9.02:0,9,100 0/1:215,34:250:22.63:27,0,23 ./. 0/0:171,57:228:3.01:0,3,33 ./. 0/0:224,25:250:3.01:0,3,33 0/1:231,19:250:27.42:27,0,33 0/1:224,25:250:24.41:24,0,58 0/0:197,10:207:3.01:0,3,33 ./. 0/0:243,5:248:3.01:0,3,33 ./. ./. ./. 0/1:194,16:210:27.42:27,0,27 0/0:239,0:239:12.03:0,12,134 ./. 0/0:225,1:227:9.02:0,9,100 0/0:245,5:250:5.99:0,6,55 ./. 0/0:203,7:210:6.02:0,6,67 0/0:193,34:227:2.98:0,3,22 0/0:240,0:240:3.01:0,3,33 1/1:198,52:250:6.02:67,6,0 ./. 0/1:194,35:229:54.83:55,0,55 0/1:250,0:250:1.76:0,3,22 0/0:197,17:214:3.01:0,3,33 0/0:221,0:221:6.02:0,6,67 1 16901668 . T C 22564.66 . 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C G 4339.63 . 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G A 35661.38 . 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T C 2824.73 . 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A C 697.29 . 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T A 50403.34 . AC=57;AF=0.679;AN=84;BaseQRankSum=-37.325;DP=5455;DS;Dels=0.00;FS=60.365;HRun=0;HaplotypeScore=2.8773;InbreedingCoeff=-0.4737;MQ=23.84;MQ0=1003;MQRankSum=15.104;QD=9.24;ReadPosRankSum=2.560 GT:AD:DP:GQ:PL 0/1:101,43:144:99:680,0,1047 0/1:61,52:113:99:961,0,653 1/1:3,93:96:99:1937,177,0 0/1:127,59:186:99:821,0,1734 0/1:125,66:191:99:945,0,1775 0/1:136,40:177:99:282,0,2068 0/1:129,33:162:99:290,0,1637 0/1:68,76:144:99:1194,0,652 0/1:39,63:104:99:927,0,318 1/1:4,100:105:99:1983,180,0 0/1:141,31:173:99:431,0,1471 1/1:5,75:80:99:1426,129,0 1/1:1,70:71:99:1146,105,0 0/1:56,62:118:99:959,0,562 1/1:6,160:166:99:2986,250,0 1/1:2,82:84:99:1524,138,0 1/1:0,93:93:99:1824,165,0 0/1:65,65:130:99:1063,0,604 0/1:116,55:171:99:697,0,1274 0/1:81,110:191:99:1841,0,1008 1/1:5,108:114:99:1991,183,0 0/1:58,44:103:99:678,0,601 0/1:128,65:193:99:447,0,1992 0/1:64,69:133:99:806,0,772 1/1:2,81:83:99:1197,108,0 0/1:126,41:167:99:396,0,1951 0/1:62,67:129:99:1096,0,572 0/1:57,73:130:99:1435,0,507 0/1:57,64:122:99:794,0,386 1/1:5,108:113:99:1956,177,0 0/1:64,47:111:99:579,0,634 1/1:0,107:107:99:2268,208,0 1/1:2,111:113:99:2180,182,0 0/1:69,53:122:99:842,0,736 0/1:64,50:114:99:756,0,767 0/1:106,38:145:99:436,0,1124 0/1:80,96:176:99:1457,0,909 0/1:98,61:159:99:660,0,1248 1/1:1,83:84:99:1630,147,0 1/1:1,92:94:99:2023,183,0 1/1:1,98:100:99:1959,177,0 0/1:74,70:144:99:900,0,879 1 16915357 . C T 1363.11 . AC=17;AF=0.202;AN=84;BaseQRankSum=-7.012;DP=9359;DS;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.9262;InbreedingCoeff=-0.1548;MQ=5.58;MQ0=8998;MQRankSum=-5.513;QD=0.35;ReadPosRankSum=-0.067 GT:AD:DP:GQ:PL 0/0:60,104:164:9.03:0,9,117 0/0:36,131:167:15.02:0,15,161 0/0:52,146:198:12.04:0,12,151 0/0:89,128:217:15.04:0,15,179 0/1:62,188:250:45.81:46,0,162 0/0:72,151:223:6.02:0,6,67 0/1:111,120:231:12.37:12,0,201 0/0:87,153:240:21.05:0,21,239 0/0:50,141:191:9.03:0,9,112 0/0:56,153:209:21.04:0,21,232 0/0:53,115:168:15.05:0,15,181 0/0:73,132:205:9.03:0,9,106 0/0:51,111:162:15.04:0,15,182 0/0:58,151:209:18.05:0,18,215 0/1:70,179:250:48.82:49,0,110 0/1:41,209:250:45.83:46,0,136 0/0:126,115:241:21.06:0,21,257 0/0:94,140:234:18.05:0,18,210 0/1:123,126:250:51.83:52,0,88 0/1:77,170:247:99:143,0,148 0/0:88,161:250:33.10:0,33,407 0/0:102,99:201:12.03:0,12,137 0/1:91,159:250:60.71:65,0,61 0/1:74,176:250:51.82:52,0,95 0/0:76,174:250:9.03:0,9,112 0/1:68,182:250:54.69:55,0,133 1/1:47,176:223:9.02:94,9,0 0/0:73,126:199:6.02:0,6,73 0/1:69,179:248:99:140,0,99 0/0:65,170:235:39.11:0,39,456 0/1:69,181:250:53.85:168,0,54 0/0:71,179:250:24.07:0,24,281 0/1:51,196:247:85.78:87,0,86 0/0:96,71:167:12.03:0,12,139 0/0:104,93:197:21.07:0,21,260 0/1:97,152:250:99:297,0,109 0/0:133,111:245:5.68:0,6,408 0/0:115,107:222:18.05:0,18,207 0/0:68,96:164:18.05:0,18,205 0/1:50,195:246:99:110,0,142 0/0:65,144:209:15.04:0,15,169 0/1:58,190:248:99:111,0,125 1 16915365 . G T 803.24 . AC=7;AF=0.083;AN=84;BaseQRankSum=2.437;DP=9921;DS;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=1.0701;InbreedingCoeff=0.6023;MQ=5.56;MQ0=9540;MQRankSum=3.272;QD=0.70;ReadPosRankSum=-0.021 GT:AD:DP:GQ:PL 0/0:185,2:187:9.03:0,9,110 0/0:194,2:196:15.01:0,15,155 0/0:236,0:236:12.04:0,12,143 0/0:241,0:241:24.06:0,24,263 0/0:246,0:246:21.05:0,21,236 0/0:250,0:250:12.03:0,12,133 0/0:249,1:250:18.04:0,18,208 0/0:248,2:250:24.04:0,24,265 0/0:218,0:218:9.03:0,9,107 0/0:235,3:238:15.03:0,15,163 0/0:193,0:193:15.04:0,15,175 0/0:234,2:236:12.01:0,12,126 0/0:187,0:187:15.04:0,15,173 0/0:250,0:250:27.08:0,27,317 0/0:249,1:250:21.02:0,21,209 0/0:250,0:250:15.03:0,15,158 0/0:250,0:250:21.04:0,21,228 0/0:250,0:250:21.06:0,21,238 0/0:250,0:250:12.03:0,12,138 0/0:250,0:250:27.05:0,27,292 1/1:177,73:250:27.08:322,27,0 0/1:190,36:226:0.26:127,12,0 0/0:250,0:250:24.06:0,24,273 0/0:247,0:247:12.03:0,12,140 0/0:250,0:250:9.03:0,9,104 0/0:250,0:250:18.03:0,18,203 0/0:246,0:246:9.02:0,9,94 0/0:218,2:220:12.03:0,12,138 0/0:249,1:250:27.06:0,27,290 0/0:250,0:250:33.09:0,33,371 0/0:249,1:250:24.07:0,24,270 0/1:223,27:250:54.83:64,0,55 0/0:250,0:250:15.04:0,15,173 0/0:183,1:184:18.04:0,18,196 0/0:218,0:218:21.06:0,21,243 0/0:250,0:250:33.08:0,33,372 0/1:207,41:248:99:188,0,166 0/0:242,1:243:15.03:0,15,162 1/1:109,69:179:21.06:237,21,0 0/0:250,0:250:30.07:0,30,329 0/0:229,1:230:15.04:0,15,170 0/0:247,3:250:27.07:0,27,296 1 16915439 . G A 3.97 . AC=1;AF=0.014;AN=74;BaseQRankSum=-1.491;DP=10500;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5127;InbreedingCoeff=-0.1213;MQ=3.34;MQ0=10211;MQRankSum=-3.462;QD=0.02;ReadPosRankSum=-1.585 GT:AD:DP:GQ:PL ./. 0/0:250,0:250:3.01:0,3,39 0/0:242,8:250:15.05:0,15,184 0/0:250,0:250:3.01:0,3,33 0/0:248,1:250:9.03:0,9,106 0/0:231,19:250:3.01:0,3,39 0/0:244,6:250:9.03:0,9,118 0/0:238,12:250:6.02:0,6,73 0/0:235,15:250:6.02:0,6,72 0/0:240,10:250:6.02:0,6,67 0/0:227,22:250:3.01:0,3,33 0/0:241,9:250:6.02:0,6,72 0/0:241,8:250:15.03:0,15,164 0/0:240,10:250:3.01:0,3,33 0/0:249,1:250:3.01:0,3,39 0/0:249,1:250:15.04:0,15,170 0/0:250,0:250:3.01:0,3,39 ./. 0/0:250,0:250:9.02:0,9,97 0/0:249,0:250:3.01:0,3,38 ./. 0/0:250,0:250:15.02:0,15,154 0/0:249,1:250:9.03:0,9,106 0/0:250,0:250:12.04:0,12,145 0/0:250,0:250:3.01:0,3,39 0/0:249,1:250:6.02:0,6,72 0/0:247,3:250:6.02:0,6,71 0/0:234,16:250:3.01:0,3,39 0/0:250,0:250:12.03:0,12,128 ./. 0/1:225,25:250:46.07:46,0,84 0/0:236,14:250:3.01:0,3,33 0/0:246,4:250:9.03:0,9,106 0/0:242,8:250:9.03:0,9,111 0/0:241,9:250:6.02:0,6,72 0/0:250,0:250:3.01:0,3,33 ./. 0/0:250,0:250:6.02:0,6,77 0/0:248,0:250:9.02:0,9,98 0/0:245,5:250:12.03:0,12,134 0/0:239,11:250:3.01:0,3,33 0/0:244,6:250:15.05:0,15,183 1 16915513 . C G 223.24 . AC=14;AF=0.412;AN=34;BaseQRankSum=0.248;DP=10492;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;InbreedingCoeff=0.1884;MQ=2.37;MQ0=10003;MQRankSum=3.888;QD=0.10;ReadPosRankSum=-0.353 GT:AD:DP:GQ:PL ./. ./. ./. ./. 0/0:249,0:250:6.02:0,6,73 0/0:250,0:250:3.01:0,3,39 ./. 1/1:222,28:250:6.02:67,6,0 ./. ./. ./. 0/1:217,33:250:23.61:27,0,24 ./. ./. 1/1:233,14:250:3.01:33,3,0 0/0:227,23:250:3.01:0,3,39 1/1:204,46:250:3.01:33,3,0 ./. ./. ./. 0/0:249,0:250:3.01:0,3,39 ./. ./. 0/1:221,29:250:1.76:30,3,0 ./. ./. 0/0:250,0:250:15.04:0,15,173 ./. 0/0:243,7:250:6.02:0,6,67 ./. 0/0:233,17:250:3.01:0,3,39 1/1:235,15:250:3.01:33,3,0 ./. 0/1:224,26:250:21.65:27,0,22 0/1:235,15:250:27.42:27,0,27 ./. ./. ./. 0/0:250,0:250:6.02:0,6,67 1/1:222,28:250:3.01:33,3,0 ./. ./. 1 16915551 . T C 17.47 . AC=1;AF=0.028;AN=36;BaseQRankSum=3.380;DP=10299;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4807;InbreedingCoeff=-0.1882;MQ=2.17;MQ0=9829;MQRankSum=2.868;QD=0.07;ReadPosRankSum=-0.588 GT:AD:DP:GQ:PL ./. ./. 0/0:250,0:250:3.01:0,3,33 ./. 0/0:243,1:244:3.01:0,3,33 ./. ./. 0/0:250,0:250:3.01:0,3,33 ./. 0/0:247,0:247:9.02:0,9,100 0/0:217,0:217:6.02:0,6,67 0/0:233,0:233:3.01:0,3,30 ./. 0/0:250,0:250:3.01:0,3,30 ./. 0/0:250,0:250:6.02:0,6,65 0/0:250,0:250:3.01:0,3,30 ./. ./. 0/0:240,10:250:3.01:0,3,33 ./. 0/0:227,0:227:3.01:0,3,35 ./. ./. ./. ./. 0/1:207,29:236:24.41:58,0,24 ./. ./. ./. ./. 0/0:250,0:250:3.01:0,3,33 0/0:249,1:250:6.01:0,6,61 0/0:233,0:234:3.01:0,3,33 ./. 0/0:222,28:250:3.01:0,3,30 ./. ./. 0/0:250,0:250:6.02:0,6,67 0/0:249,1:250:6.02:0,6,66 ./. ./. 1 17250836 . A G 13644.74 . AC=35;AF=0.417;AN=84;BaseQRankSum=-4.270;DP=1566;Dels=0.00;FS=8.608;HRun=1;HaplotypeScore=1.0018;InbreedingCoeff=-0.7128;MQ=59.11;MQ0=0;MQRankSum=-0.916;QD=10.42;ReadPosRankSum=-0.715 GT:AD:DP:GQ:PL 0/1:13,14:27:99:405,0,334 0/1:28,9:37:99:208,0,851 0/1:19,20:39:99:517,0,560 0/0:53,0:53:99:0,132,1693 0/1:39,22:62:99:548,0,1102 0/1:26,26:52:99:750,0,715 0/1:36,13:49:99:292,0,917 0/1:21,31:52:99:855,0,499 0/1:14,14:29:99:424,0,428 0/1:13,8:21:99:165,0,384 0/1:13,15:28:99:414,0,369 0/1:16,14:30:99:410,0,471 0/1:10,7:17:99:195,0,292 0/1:17,8:26:99:208,0,465 0/1:87,37:124:99:828,0,2369 0/1:24,8:32:99:188,0,747 0/0:17,0:17:45.14:0,45,559 0/1:18,7:25:99:153,0,565 0/0:41,0:41:99:0,111,1373 0/1:41,21:62:99:504,0,1118 0/0:16,0:17:39.10:0,39,461 0/1:15,9:24:99:252,0,362 0/0:79,0:79:99:0,205,2575 0/1:17,5:22:99:130,0,534 0/1:17,11:28:99:288,0,562 0/1:14,6:20:99:174,0,407 0/1:22,2:24:13.48:13,0,606 0/1:24,23:47:99:577,0,651 0/1:29,9:38:99:208,0,819 0/1:16,20:36:99:564,0,432 0/1:18,4:22:47.27:47,0,520 0/1:24,43:67:99:1097,0,629 0/1:21,22:43:99:530,0,577 0/1:14,12:26:99:284,0,387 0/1:12,13:25:99:364,0,344 0/1:28,15:43:99:330,0,840 0/0:27,0:27:69.21:0,69,846 0/1:16,6:22:99:117,0,519 0/0:22,0:22:60.18:0,60,743 0/1:22,26:48:99:675,0,615 0/1:15,14:29:99:407,0,409 0/1:14,18:32:99:525,0,429 1 17256498 . C G 13.28 . AC=8;AF=0.095;AN=84;BaseQRankSum=-6.587;DP=381;Dels=0.00;FS=85.968;HRun=2;HaplotypeScore=0.2434;InbreedingCoeff=-0.1543;MQ=50.88;MQ0=9;MQRankSum=0.835;QD=0.20;ReadPosRankSum=-5.488 GT:AD:DP:GQ:PL 0/0:7,2:9:18.04:0,18,199 0/0:2,1:3:6.02:0,6,78 0/0:2,3:5:3.01:0,3,39 0/0:8,0:8:21.07:0,21,267 0/0:13,5:18:36.08:0,36,424 0/0:8,3:11:1.57:4,0,229 0/0:10,1:11:21.06:0,21,250 0/0:10,0:10:12.01:0,12,133 0/0:9,1:10:5.38:0,5,259 0/0:4,0:4:12.03:0,12,141 0/1:6,3:9:12.37:12,0,192 0/0:5,1:6:12.04:0,12,151 0/1:6,1:7:13.50:14,0,156 0/0:5,5:10:12.03:0,12,138 0/0:8,4:12:15.05:0,15,186 0/0:10,2:12:24.01:0,24,236 0/0:7,0:7:15.05:0,15,191 0/1:3,5:8:22.54:23,0,53 0/0:5,1:6:12.02:0,12,136 0/0:10,6:16:27.08:0,27,327 0/0:4,1:5:12.03:0,12,131 0/0:7,3:10:17.27:0,17,187 0/0:9,2:11:21.04:0,21,235 0/0:7,2:9:15.05:0,15,196 0/0:5,3:8:12.04:0,12,143 0/0:5,1:6:9.01:0,9,99 0/0:6,1:7:15.04:0,15,183 0/1:5,3:8:10.66:11,0,132 0/0:8,3:11:21.06:0,21,253 0/1:8,1:9:10.51:11,0,189 0/0:5,0:5:9.03:0,9,112 0/0:14,4:18:39.09:0,39,457 0/0:15,1:16:30.08:0,30,349 0/0:11,2:13:0.75:7,0,268 0/0:4,1:5:6.01:0,6,63 0/0:10,1:11:24.07:0,24,292 0/1:7,2:9:12.63:13,0,119 0/0:7,2:9:21.05:0,21,258 0/0:2,0:2:6.02:0,6,74 0/1:4,2:6:19.33:19,0,118 0/0:9,1:10:15.04:0,15,173 0/1:7,4:11:18.39:18,0,142 1 17256626 . A G 44.14 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.686;DP=689;Dels=0.00;FS=8.139;HRun=1;HaplotypeScore=0.5645;InbreedingCoeff=-0.0134;MQ=56.75;MQ0=1;MQRankSum=1.434;QD=1.92;ReadPosRankSum=1.896 GT:AD:DP:GQ:PL 0/0:19,0:19:51.16:0,51,650 0/0:8,0:8:18.03:0,18,215 0/0:17,0:17:45.14:0,45,566 0/0:14,0:14:30.10:0,30,390 0/0:22,0:22:63.19:0,63,761 0/0:15,0:15:39.11:0,39,493 0/0:15,0:15:39.12:0,39,503 0/1:19,4:23:90.34:90,0,497 0/0:19,0:19:54.15:0,54,653 0/0:13,0:13:33.10:0,33,418 0/0:7,0:7:18.06:0,18,222 0/0:6,0:6:18.06:0,18,220 0/0:8,0:8:24.07:0,24,291 0/0:15,0:15:45.14:0,45,555 0/0:62,0:62:99:0,159,2012 0/0:11,0:11:30.09:0,30,361 0/0:8,0:8:24.08:0,24,298 0/0:12,0:12:36.11:0,36,439 0/0:18,0:18:39.12:0,39,481 0/0:33,0:33:84.26:0,84,1068 0/0:18,0:18:48.14:0,48,584 0/0:15,0:15:33.11:0,33,436 0/0:28,0:28:75.23:0,75,942 0/0:7,0:7:18.05:0,18,224 0/0:6,0:6:15.05:0,15,180 0/0:12,0:12:36.11:0,36,447 0/0:10,0:10:30.08:0,30,361 0/0:14,0:14:36.11:0,36,439 0/0:18,0:18:48.15:0,48,600 0/0:9,0:9:24.07:0,24,294 0/0:15,0:15:36.11:0,36,453 0/0:35,0:35:84.27:0,84,1073 0/0:16,0:16:42.12:0,42,514 0/0:18,0:18:45.14:0,45,563 0/0:13,0:13:33.11:0,33,425 0/0:19,0:19:51.16:0,51,636 0/0:13,0:13:30.05:0,30,332 0/0:15,0:15:36.11:0,36,458 0/0:11,0:11:33.09:0,33,399 0/0:15,0:15:45.11:0,45,520 0/0:13,0:13:39.12:0,39,481 0/0:24,0:24:63.20:0,63,800 1 17256645 . G A 160.80 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.646;DP=621;Dels=0.00;FS=5.202;HRun=0;HaplotypeScore=0.3928;InbreedingCoeff=-0.0259;MQ=56.12;MQ0=5;MQRankSum=1.616;QD=7.66;ReadPosRankSum=0.816 GT:AD:DP:GQ:PL 0/0:17,0:17:42.09:0,42,483 0/0:9,0:9:21.05:0,21,231 0/0:12,0:12:36.10:0,36,413 0/0:14,0:14:33.11:0,33,432 0/0:24,0:24:63.17:0,63,737 0/0:15,0:15:36.08:0,36,430 0/0:12,0:12:30.09:0,30,385 0/0:20,0:20:45.13:0,45,569 0/0:24,0:24:60.15:0,60,677 0/0:11,0:11:30.08:0,30,335 0/0:10,0:10:30.08:0,30,328 0/0:6,0:6:18.05:0,18,203 0/0:7,0:7:18.05:0,18,195 0/0:11,0:11:33.08:0,33,354 0/0:49,0:49:99:0,126,1477 0/0:16,0:16:48.10:0,48,515 0/0:6,0:6:18.04:0,18,195 0/0:13,0:13:36.10:0,36,396 0/0:17,0:17:48.12:0,48,528 0/0:29,0:29:75.21:0,75,887 0/0:14,0:14:36.07:0,36,402 0/0:15,0:15:39.10:0,39,454 0/0:25,0:25:66.18:0,66,804 0/0:6,0:6:15.04:0,15,177 0/0:8,0:8:24.06:0,24,270 0/0:7,0:7:18.04:0,18,205 0/0:10,0:10:30.02:0,30,305 0/0:13,0:13:33.08:0,33,373 0/0:12,0:12:27.08:0,27,325 0/1:6,2:8:39.99:40,0,135 0/1:4,9:13:99:183,0,111 0/0:36,0:36:93.22:0,93,1047 0/0:13,0:13:36.10:0,36,404 0/0:15,0:15:33.07:0,33,369 0/0:10,0:10:27.08:0,27,318 0/0:19,0:19:54.15:0,54,632 0/0:10,0:10:27.07:0,27,303 0/0:13,0:13:36.09:0,36,412 0/0:9,0:9:27.07:0,27,320 0/0:12,0:12:27.06:0,27,310 0/0:12,0:12:36.10:0,36,408 0/0:19,0:19:51.13:0,51,586 1 17257840 . C G 5210.10 . AC=7;AF=0.083;AN=84;BaseQRankSum=-4.722;DP=3984;Dels=0.00;FS=13.039;HRun=2;HaplotypeScore=2.9764;InbreedingCoeff=-0.0909;MQ=57.41;MQ0=8;MQRankSum=1.558;QD=5.99;ReadPosRankSum=1.455 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,175,2208 0/0:60,0:60:99:0,150,1921 0/0:79,0:79:99:0,205,2620 0/0:154,0:154:99:0,373,5086 0/1:138,45:184:99:1012,0,4375 0/0:223,0:223:99:0,539,7399 0/0:148,0:148:99:0,373,5051 0/0:193,0:193:99:0,482,6533 0/0:108,0:108:99:0,274,3561 0/0:54,0:54:99:0,153,1934 0/0:61,0:61:99:0,172,2191 0/0:56,0:56:99:0,144,1854 0/0:53,0:53:99:0,144,1840 0/0:55,0:55:99:0,156,1941 0/1:103,68:172:99:1650,0,3089 0/1:52,26:78:99:608,0,1610 0/0:42,0:42:99:0,117,1458 0/0:47,0:47:99:0,129,1609 0/0:83,0:83:99:0,214,2742 0/0:120,1:121:99:0,292,3785 0/0:51,0:51:99:0,132,1676 0/0:70,0:71:99:0,184,2376 0/0:239,0:239:99:0,599,8232 0/1:70,17:87:99:260,0,2210 0/1:109,25:134:99:442,0,3348 0/1:83,35:118:99:676,0,2583 0/0:59,0:59:99:0,172,2140 0/0:84,0:84:99:0,232,2934 0/0:84,0:84:99:0,217,2762 0/0:64,0:64:99:0,174,2190 0/0:66,0:66:99:0,178,2259 0/0:134,0:134:99:0,346,4403 0/1:74,23:97:99:561,0,2226 0/0:77,0:77:99:0,211,2687 0/0:49,0:49:99:0,138,1756 0/0:76,0:76:99:0,199,2514 0/0:63,0:63:99:0,159,2037 0/0:52,0:52:99:0,141,1808 0/0:35,0:35:99:0,99,1244 0/0:126,0:126:99:0,352,4449 0/0:80,0:80:99:0,211,2679 0/0:103,0:103:99:0,277,3550 1 17264920 . C T 1035.18 . AC=25;AF=0.298;AN=84;BaseQRankSum=1.780;DP=281;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2276;InbreedingCoeff=-0.1764;MQ=41.84;MQ0=29;MQRankSum=-6.078;QD=6.20;ReadPosRankSum=-1.562 GT:AD:DP:GQ:PL 0/1:3,2:5:46.14:46,0,88 0/1:4,1:5:12.63:13,0,116 0/0:3,0:3:6.01:0,6,61 0/0:7,0:7:18.05:0,18,204 0/0:5,0:5:9.01:0,9,87 0/1:6,1:7:12.63:13,0,122 0/0:8,0:8:12.04:0,12,162 0/1:5,4:9:46.93:47,0,120 0/1:4,3:7:48.13:56,0,48 0/1:7,3:10:36.01:36,0,183 0/1:6,2:8:44.42:44,0,128 0/1:1,1:2:21.65:22,0,25 0/0:3,0:3:6.02:0,6,64 0/1:3,1:4:18.65:19,0,49 0/0:14,0:14:36.09:0,36,390 0/0:5,0:5:12.03:0,12,126 0/0:3,0:3:9.01:0,9,88 0/0:1,0:1:3.01:0,3,36 0/1:6,4:10:47.64:48,0,134 0/1:8,8:19:82.67:115,0,83 0/0:4,0:4:6.01:0,6,61 0/0:5,0:6:12.03:0,12,125 0/1:9,3:12:39.79:40,0,234 0/0:4,0:4:12.03:0,12,133 0/0:13,0:13:27.04:0,27,315 0/0:2,0:2:6.02:0,6,74 0/1:3,4:7:16.52:105,0,17 1/1:0,5:5:12.03:133,12,0 0/0:5,0:5:12.03:0,12,129 0/1:5,4:9:99:100,0,120 0/0:4,1:5:6.02:0,6,65 0/1:4,4:9:79.25:109,0,79 0/1:8,1:9:9.37:9,0,218 0/1:6,1:8:8.66:9,0,124 0/0:3,0:4:9.02:0,9,94 0/1:4,2:6:52.95:54,0,53 0/0:8,0:8:12.03:0,12,122 0/0:9,0:9:18.03:0,18,185 0/0:5,0:5:12.03:0,12,129 0/1:4,3:7:80.16:80,0,120 1/1:0,3:5:9.01:90,9,0 1/1:1,2:4:3:28,3,0 1 17264939 . T C 1561.93 . AC=28;AF=0.333;AN=84;BaseQRankSum=-3.994;DP=299;Dels=0.00;FS=9.470;HRun=0;HaplotypeScore=0.1720;InbreedingCoeff=-0.4860;MQ=45.92;MQ0=24;MQRankSum=-6.368;QD=7.33;ReadPosRankSum=0.091 GT:AD:DP:GQ:PL 0/1:2,1:3:22.53:23,0,60 0/1:4,1:5:12.63:13,0,124 0/1:6,1:7:15.92:16,0,188 0/0:10,0:10:27.06:0,27,324 0/0:1,1:3:3.01:0,3,39 0/1:4,1:5:12.63:13,0,131 0/0:7,0:7:15.05:0,15,192 0/1:5,7:12:99:156,0,153 0/1:3,3:6:49.60:50,0,92 0/1:6,2:8:41.02:41,0,173 0/1:3,1:4:18.66:19,0,48 0/1:2,1:3:18.64:19,0,60 0/0:1,0:1:3.01:0,3,36 0/1:3,3:6:58.01:83,0,58 0/0:17,1:19:48.14:0,48,556 0/0:6,0:6:18.05:0,18,209 0/0:3,0:3:9.03:0,9,110 0/1:1,0:1:1.76:0,3,35 0/1:6,6:12:76.18:76,0,150 0/1:8,11:19:99:139,0,173 0/0:2,2:4:6.02:0,6,71 0/1:4,1:5:21.42:21,0,84 0/1:6,5:11:99:113,0,192 0/0:4,0:4:12.03:0,12,136 0/0:10,0:10:27.08:0,27,333 0/0:2,0:2:3.01:0,3,45 0/1:6,7:13:99:138,0,155 0/1:1,7:8:3.64:151,0,4 0/1:5,2:7:3.63:4,0,165 0/1:8,2:10:33.10:33,0,217 0/1:3,3:6:26.54:27,0,99 0/1:7,8:15:99:188,0,209 0/1:11,6:17:99:164,0,284 0/1:7,1:8:16.74:17,0,180 0/1:2,2:4:54.83:55,0,62 0/1:2,2:4:55.72:56,0,58 0/0:7,0:7:15.05:0,15,181 0/0:6,0:6:15.04:0,15,172 0/0:4,0:4:12.03:0,12,135 0/1:3,2:5:21.40:21,0,98 0/1:1,1:2:21.65:22,0,29 0/1:3,4:7:76.47:76,0,91 1 17292505 . G A 628.34 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.506;DP=1897;Dels=0.00;FS=2.677;HRun=1;HaplotypeScore=2.1503;InbreedingCoeff=-0.0120;MQ=59.11;MQ0=0;MQRankSum=0.977;QD=8.98;ReadPosRankSum=0.807 GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,99,1233 0/0:44,0:44:99:0,117,1472 0/0:30,0:30:87.27:0,87,1085 0/0:70,0:70:99:0,184,2378 0/0:63,0:63:99:0,181,2379 0/0:45,0:46:99:0,120,1577 0/0:51,0:51:99:0,132,1738 0/0:64,0:64:99:0,169,2216 0/0:37,0:37:99:0,108,1380 0/0:31,0:31:87.27:0,87,1096 0/0:26,0:26:72.22:0,72,896 0/0:38,0:38:96.28:0,96,1214 0/0:29,0:29:78.25:0,78,1008 0/0:39,0:39:99:0,105,1285 0/0:131,0:131:99:0,346,4210 0/0:39,0:39:99:0,114,1356 0/0:50,0:50:99:0,144,1790 0/0:38,0:38:99:0,111,1385 0/0:59,0:59:99:0,153,1872 0/0:73,0:73:99:0,193,2429 0/0:43,0:43:96.25:0,96,1137 0/0:48,0:48:99:0,129,1627 0/1:45,25:70:99:675,0,1270 0/0:37,0:37:99:0,99,1297 0/0:39,0:39:99:0,108,1413 0/0:50,0:50:99:0,129,1705 0/0:19,0:19:57.17:0,57,704 0/0:37,0:37:96.27:0,96,1173 0/0:28,0:28:72.22:0,72,921 0/0:45,0:45:99:0,126,1553 0/0:40,0:40:99:0,117,1461 0/0:54,0:54:99:0,132,1665 0/0:45,0:45:99:0,123,1532 0/0:38,0:38:99:0,108,1308 0/0:28,0:29:81.23:0,81,987 0/0:36,0:36:90.24:0,90,1134 0/0:68,0:68:99:0,187,2243 0/0:29,0:29:78.24:0,78,974 0/0:31,0:31:75.23:0,75,943 0/0:40,0:40:99:0,105,1283 0/0:35,0:35:90.25:0,90,1129 0/0:44,0:44:99:0,120,1482 1 17294861 . G T 39.61 . AC=2;AF=0.026;AN=78;BaseQRankSum=1.009;DP=118;Dels=0.00;FS=2.114;HRun=0;HaplotypeScore=0.1145;InbreedingCoeff=0.0733;MQ=59.09;MQ0=0;MQRankSum=-0.053;QD=9.90;ReadPosRankSum=1.080 GT:AD:DP:GQ:PL 0/0:4,0:4:9.03:0,9,111 0/0:2,0:2:6.02:0,6,75 0/0:3,0:3:9.02:0,9,99 0/0:3,0:3:9.03:0,9,119 0/0:5,0:5:12.04:0,12,163 0/0:2,0:2:6.02:0,6,70 ./. 0/0:1,0:1:3.01:0,3,32 0/1:1,1:2:30.96:31,0,33 0/0:2,0:2:3.01:0,3,45 0/1:0,2:2:0.97:74,6,0 0/0:2,0:2:6.02:0,6,66 0/0:1,0:1:3.01:0,3,33 0/0:4,0:4:12.03:0,12,134 0/0:9,0:9:21.04:0,21,238 0/0:5,0:5:15.04:0,15,173 0/0:4,0:4:12.03:0,12,133 0/0:3,0:3:9.02:0,9,100 0/0:4,0:4:12.04:0,12,145 0/0:2,0:2:6.02:0,6,65 0/0:5,0:5:15.04:0,15,176 ./. 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,33 ./. 0/0:1,0:1:3.01:0,3,42 0/0:2,0:2:6.02:0,6,68 0/0:3,0:3:9.03:0,9,105 0/0:3,0:3:9.02:0,9,102 0/0:3,0:3:9.03:0,9,109 0/0:1,0:1:3.01:0,3,30 0/0:3,0:3:9.02:0,9,98 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.02:0,9,106 0/0:2,0:2:3.01:0,3,45 0/0:6,0:6:15.02:0,15,160 0/0:5,0:5:12.03:0,12,140 0/0:2,0:2:6.02:0,6,71 0/0:5,0:5:15.03:0,15,159 0/0:3,0:3:6.02:0,6,74 0/0:4,0:4:9.02:0,9,112 0/0:2,0:2:6.01:0,6,62 1 17295679 . T C 16861.38 . AC=79;AF=0.940;AN=84;BaseQRankSum=3.993;DP=514;Dels=0.00;FS=2.699;HRun=1;HaplotypeScore=0.5567;InbreedingCoeff=-0.0693;MQ=58.12;MQ0=0;MQRankSum=0.380;QD=32.80;ReadPosRankSum=0.105 GT:AD:DP:GQ:PL 0/1:6,3:9:88.43:88,0,155 0/1:3,2:5:53.90:54,0,88 0/1:3,4:7:77.26:118,0,77 1/1:0,23:23:63.17:783,63,0 1/1:0,21:21:54.18:718,54,0 1/1:0,13:13:36.10:456,36,0 1/1:0,11:11:33.10:418,33,0 1/1:0,14:14:39.12:493,39,0 1/1:0,6:6:18.06:230,18,0 1/1:0,4:4:12.04:153,12,0 1/1:0,8:8:21.06:260,21,0 1/1:0,12:12:33.10:409,33,0 1/1:0,2:2:6.01:64,6,0 1/1:0,9:9:27.08:334,27,0 1/1:0,29:29:84.26:1054,84,0 0/1:12,5:17:99:99,0,328 1/1:0,5:5:12.03:141,12,0 1/1:0,11:11:33.10:407,33,0 1/1:0,25:25:66.18:821,66,0 1/1:0,14:14:42.10:495,42,0 1/1:0,9:9:24.08:305,24,0 1/1:0,12:12:36.11:442,36,0 1/1:0,32:32:90.28:1164,90,0 1/1:0,20:20:54.18:727,54,0 1/1:0,13:13:36.10:458,36,0 1/1:0,10:10:27.06:332,27,0 1/1:0,13:13:39.12:488,39,0 1/1:0,18:18:51.16:642,51,0 0/1:3,5:8:93.07:135,0,93 1/1:0,14:14:42.11:496,42,0 1/1:0,12:12:33.10:415,33,0 1/1:0,10:10:24.08:305,24,0 1/1:0,7:7:18.05:215,18,0 1/1:0,9:9:24.08:297,24,0 1/1:0,13:13:36.11:453,36,0 1/1:0,13:13:36.10:426,36,0 1/1:0,4:4:12.04:147,12,0 1/1:0,9:9:27.08:321,27,0 1/1:0,11:11:30.10:381,30,0 1/1:0,12:12:36.10:420,36,0 1/1:0,9:9:27.08:331,27,0 1/1:0,11:11:30.09:367,30,0 1 17295764 . A G 1478.49 . 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G A 79.56 . 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G A 191.09 . 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C T 7450.56 . 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G A 58674.18 . 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G T 27.45 . 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G C 94.17 . 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A G 5357.22 . 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C T 95968.81 . 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A C 16818.52 . AC=13;AF=0.155;AN=84;BaseQRankSum=16.045;DP=4308;Dels=0.00;FS=3.825;HRun=3;HaplotypeScore=2.9178;InbreedingCoeff=0.3629;MQ=59.36;MQ0=1;MQRankSum=0.225;QD=17.76;ReadPosRankSum=-2.385 GT:AD:DP:GQ:PL 0/0:77,0:77:99:0,208,2465 0/0:90,0:90:99:0,229,2831 0/0:69,0:69:99:0,181,2151 0/0:204,0:204:99:0,523,6321 0/0:191,1:192:99:0,452,6001 0/1:75,35:110:99:927,0,2168 0/1:82,60:143:99:1701,0,2120 0/0:141,0:141:99:0,346,4314 0/0:68,0:68:99:0,174,2098 0/0:71,1:72:99:0,193,2301 0/1:28,43:73:99:1220,0,729 0/0:81,3:85:99:0,196,2567 0/0:74,0:74:99:0,199,2350 0/0:83,0:83:99:0,226,2701 0/0:234,1:235:99:0,593,7195 0/0:78,0:78:99:0,211,2544 0/0:92,0:92:99:0,241,2874 0/1:49,33:82:99:967,0,1247 0/0:116,4:120:99:0,289,3478 0/0:139,0:139:99:0,364,4400 1/1:0,103:104:99:3165,259,0 0/1:47,41:88:99:1188,0,1191 0/0:224,2:226:99:0,566,6950 0/0:99,1:100:99:0,262,3157 0/0:141,1:142:99:0,367,4515 0/0:104,1:105:99:0,265,3209 0/0:78,0:79:99:0,214,2562 0/0:92,1:93:99:0,259,3085 0/0:66,0:66:99:0,184,2177 0/1:49,34:83:99:793,0,1381 0/0:72,3:75:99:0,202,2386 1/1:1,108:109:99:3314,232,0 1/1:0,82:82:99:2642,214,0 0/0:76,0:77:99:0,199,2414 0/0:72,1:74:99:0,190,2290 0/0:78,0:78:99:0,214,2541 0/0:104,2:106:99:0,268,3236 0/0:66,0:67:99:0,181,2159 0/1:40,33:73:99:902,0,1115 0/0:82,2:84:99:0,226,2651 0/0:75,3:78:99:0,134,2413 0/0:92,0:92:99:0,250,2968 1 17557133 . A C 13170.71 . AC=38;AF=0.452;AN=84;BaseQRankSum=-10.919;DP=1193;Dels=0.00;FS=3.750;HRun=5;HaplotypeScore=0.9634;InbreedingCoeff=-0.1535;MQ=59.16;MQ0=0;MQRankSum=0.301;QD=14.35;ReadPosRankSum=-1.369 GT:AD:DP:GQ:PL 1/1:0,26:27:69.19:796,69,0 0/1:16,6:22:99:126,0,455 0/0:32,0:32:84.26:0,84,1069 1/1:2,29:31:33.47:902,33,0 0/1:30,16:46:99:454,0,874 1/1:0,23:23:66.20:832,66,0 0/1:15,13:28:99:378,0,460 0/1:12,3:15:81.41:81,0,331 0/1:11,8:19:99:177,0,350 1/1:0,18:18:48.11:529,48,0 0/0:15,0:15:39.11:0,39,476 0/0:13,0:13:30.10:0,30,390 0/1:16,12:28:99:292,0,458 0/0:19,0:19:57.18:0,57,705 0/1:52,49:101:99:1150,0,1444 0/0:25,0:25:66.21:0,66,844 0/1:15,11:27:99:302,0,397 0/0:20,0:20:51.16:0,51,646 0/1:22,16:38:99:400,0,610 0/1:17,17:35:99:433,0,395 0/0:56,1:57:99:0,141,1801 0/0:25,0:25:63.20:0,63,810 0/1:23,18:44:99:531,0,697 0/1:13,18:31:99:438,0,392 0/1:19,12:31:99:309,0,558 0/1:11,6:19:99:149,0,313 0/0:24,0:24:60.17:0,60,758 0/1:10,8:18:99:191,0,313 0/1:10,9:19:99:220,0,319 0/0:20,0:20:57.17:0,57,704 0/1:8,10:18:99:271,0,211 0/1:19,17:37:99:425,0,523 0/0:25,0:25:72.23:0,72,901 1/1:0,17:17:45.11:511,45,0 1/1:0,18:19:51.14:586,51,0 0/1:11,17:28:99:455,0,327 0/1:19,14:33:99:378,0,568 0/1:13,13:26:99:302,0,360 0/1:17,15:32:99:372,0,511 1/1:1,25:26:27.05:691,27,0 0/1:19,11:30:99:264,0,589 0/1:22,9:32:99:224,0,650 1 17718671 . AG A 9692.13 . 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G A 679.12 . 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G A 859.50 . 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C T 246.67 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.097;DP=539;Dels=0.00;FS=1.120;HRun=0;HaplotypeScore=0.4547;InbreedingCoeff=-0.0293;MQ=58.49;MQ0=0;MQRankSum=-0.462;QD=9.49;ReadPosRankSum=-0.302 GT:AD:DP:GQ:PL 0/0:7,0:7:21.06:0,21,245 0/0:13,0:13:33.08:0,33,388 0/0:6,0:6:15.04:0,15,171 0/0:33,1:34:70.65:0,71,1164 0/0:27,0:27:78.23:0,78,971 0/0:24,0:24:69.21:0,69,833 0/0:16,0:16:45.14:0,45,571 0/0:24,0:24:57.18:0,57,728 0/0:12,0:13:30.08:0,30,354 0/0:6,0:6:15.05:0,15,186 0/0:7,0:7:21.05:0,21,232 0/0:6,0:6:18.05:0,18,209 0/0:11,0:11:30.07:0,30,337 0/0:10,0:10:30.08:0,30,343 0/0:30,0:30:81.22:0,81,928 0/0:9,0:9:27.07:0,27,301 0/0:11,0:11:33.10:0,33,392 0/0:7,0:7:21.06:0,21,243 0/0:17,0:17:48.13:0,48,548 0/0:20,0:20:54.14:0,54,619 0/0:13,0:13:30.09:0,30,385 0/0:13,0:13:33.09:0,33,390 0/0:30,0:30:81.24:0,81,1027 0/0:14,0:14:36.11:0,36,453 0/0:23,0:23:60.19:0,60,774 0/0:12,0:12:33.11:0,33,435 0/0:11,0:11:33.07:0,33,363 0/0:7,0:7:21.04:0,21,226 0/0:6,0:6:15.04:0,15,180 0/0:10,0:10:24.07:0,24,290 0/0:12,0:12:30.08:0,30,333 0/0:13,0:13:39.11:0,39,447 0/0:5,0:5:15.05:0,15,183 0/0:4,0:4:12.03:0,12,140 0/0:4,0:4:12.03:0,12,134 0/0:8,0:8:21.06:0,21,241 0/1:10,8:18:99:187,0,267 0/1:4,4:8:84.85:122,0,85 0/0:8,0:8:24.06:0,24,265 0/0:7,0:7:18.05:0,18,199 0/0:10,0:10:24.07:0,24,289 0/0:5,0:5:12.03:0,12,139 1 17934354 . C G 47.47 . 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C T 2135.14 . 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G A 4375.56 . AC=5;AF=0.060;AN=84;BaseQRankSum=-8.613;DP=1787;Dels=0.00;FS=20.273;HRun=0;HaplotypeScore=2.5612;InbreedingCoeff=-0.0633;MQ=58.65;MQ0=0;MQRankSum=0.848;QD=12.40;ReadPosRankSum=0.287 GT:AD:DP:GQ:PL 0/0:31,0:31:87.27:0,87,1088 0/0:34,0:35:93.27:0,93,1148 0/0:28,0:29:78.21:0,78,933 0/1:51,44:104:99:1234,0,1237 0/1:47,38:88:99:1013,0,1209 0/0:73,0:76:99:0,159,2040 0/0:82,0:85:99:0,202,2510 0/0:69,0:71:99:0,177,2156 0/0:30,0:31:81.21:0,81,978 0/0:28,0:31:78.24:0,78,976 0/0:29,0:30:78.19:0,78,917 0/1:14,16:32:99:478,0,426 0/1:10,15:26:99:426,0,220 0/0:20,0:21:54.16:0,54,664 0/0:75,0:76:99:0,192,2289 0/0:28,0:28:69.20:0,69,825 0/0:19,0:19:51.15:0,51,622 0/0:28,0:29:78.21:0,78,931 0/0:46,0:50:99:0,117,1407 0/0:57,0:59:99:0,126,1497 0/0:54,0:55:99:0,147,1782 0/0:29,0:29:72.21:0,72,876 0/1:46,50:103:99:1226,0,1147 0/0:57,0:58:99:0,150,1886 0/0:64,0:64:99:0,162,2023 0/0:35,0:37:66.22:0,66,881 0/0:19,0:21:48.12:0,48,558 0/0:24,0:25:63.16:0,63,757 0/0:27,0:28:69.18:0,69,834 0/0:27,0:28:75.17:0,75,887 0/0:30,0:31:72.23:0,72,911 0/0:49,0:50:99:0,132,1576 0/0:45,0:47:99:0,108,1294 0/0:26,0:27:63.18:0,63,754 0/0:27,0:27:72.16:0,72,835 0/0:30,0:33:84.23:0,84,995 0/0:36,0:36:99:0,105,1258 0/0:19,0:19:51.15:0,51,629 0/0:32,0:33:84.22:0,84,1026 0/0:21,0:21:57.18:0,57,710 0/0:33,0:33:78.22:0,78,939 0/0:30,0:31:78.24:0,78,981 1 19202896 . G A 17460.78 . 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T C 13043.22 . 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T C 9256.17 . 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T C 205.33 . AC=15;AF=0.179;AN=84;BaseQRankSum=-11.382;DP=611;Dels=0.00;FS=79.317;HRun=2;HaplotypeScore=2.3317;InbreedingCoeff=-0.2563;MQ=56.58;MQ0=0;MQRankSum=-0.675;QD=0.92;ReadPosRankSum=-2.204 GT:AD:DP:GQ:PL 0/0:11,4:15:30.08:0,30,342 0/0:14,3:17:17.42:0,17,401 0/0:2,2:4:3.01:0,3,37 0/0:11,6:17:21.06:0,21,248 0/1:6,9:15:17.66:18,0,66 0/0:10,6:16:24.06:0,24,271 0/0:5,0:5:6.02:0,6,71 0/0:8,3:11:24.07:0,24,288 0/0:8,5:13:24.07:0,24,289 0/1:5,5:10:13.61:14,0,124 0/0:10,4:14:15.04:0,15,168 0/0:11,5:16:30.08:0,30,341 0/1:9,7:16:6.53:7,0,208 0/1:5,6:11:16.61:17,0,97 0/0:26,4:30:60.18:0,60,715 0/1:11,6:18:26.30:26,0,226 0/0:6,6:12:16.86:0,17,183 0/0:9,6:15:18.05:0,18,207 0/1:11,10:21:46.91:47,0,257 0/0:18,8:26:13.41:0,13,377 0/1:14,8:22:5.28:5,0,382 0/0:7,5:12:15.01:0,15,158 0/1:6,6:12:16.52:17,0,110 0/0:6,3:9:12.03:0,12,132 0/1:7,4:11:35.60:36,0,188 0/0:1,1:2:3.01:0,3,35 0/1:5,8:13:37.28:37,0,118 0/1:7,8:15:6.65:7,0,165 0/1:6,8:14:48.08:48,0,58 0/0:10,4:14:30.08:0,30,346 0/0:9,2:11:1.90:3,0,230 0/0:14,11:25:9.49:0,9,393 0/0:12,4:16:27.08:0,27,333 0/0:9,11:20:27.07:0,27,310 0/1:6,5:11:9.55:10,0,175 0/0:7,4:11:16.86:0,17,188 0/1:13,10:23:50.61:51,0,338 0/0:9,4:13:3.38:0,3,266 0/0:10,8:18:1.65:3,0,289 0/1:8,4:12:6.63:7,0,181 0/0:8,2:10:18:0,18,181 0/0:12,3:15:5.49:0,5,347 1 19223571 . A G 2988.94 . AC=3;AF=0.036;AN=84;BaseQRankSum=7.508;DP=2573;Dels=0.00;FS=1.580;HRun=0;HaplotypeScore=0.7603;InbreedingCoeff=-0.0370;MQ=58.70;MQ0=1;MQRankSum=0.600;QD=15.81;ReadPosRankSum=0.135 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,165,1967 0/0:64,0:64:99:0,181,2152 0/0:68,0:68:99:0,199,2330 0/0:64,0:64:99:0,184,2206 0/0:61,0:61:99:0,175,2124 0/0:66,0:66:99:0,196,2417 0/0:50,0:50:99:0,147,1801 0/0:54,0:54:99:0,150,1798 0/0:52,0:52:99:0,153,1795 0/0:51,0:51:99:0,144,1699 0/0:56,0:56:99:0,165,1942 0/0:52,0:52:99:0,153,1799 0/0:49,0:49:99:0,141,1661 0/0:55,0:55:99:0,162,1915 0/0:176,0:176:99:0,493,5864 0/0:53,0:54:99:0,159,1856 0/0:49,0:49:99:0,141,1658 0/0:40,0:40:99:0,117,1380 0/0:95,0:96:99:0,277,3314 0/0:104,0:104:99:0,292,3439 0/0:102,0:102:99:0,274,3318 0/1:26,31:57:99:945,0,724 0/0:65,0:65:99:0,187,2222 0/0:42,0:42:99:0,126,1517 0/0:50,0:50:99:0,144,1724 0/0:41,0:41:99:0,120,1425 0/0:44,0:44:99:0,132,1568 0/0:59,0:59:99:0,165,1954 0/0:41,0:41:99:0,120,1415 0/0:57,0:57:99:0,168,1967 0/0:55,0:55:99:0,159,1885 0/1:37,41:78:99:1194,0,1056 0/1:23,31:54:99:925,0,603 0/0:49,0:49:99:0,141,1702 0/0:46,0:46:99:0,132,1575 0/0:73,0:73:99:0,202,2398 0/0:73,0:73:99:0,211,2478 0/0:53,0:53:99:0,153,1788 0/0:49,0:49:99:0,147,1702 0/0:62,0:62:99:0,181,2129 0/0:52,0:52:99:0,153,1812 0/0:52,0:52:99:0,153,1821 1 19411129 . A G 39465.26 . AC=57;AF=0.679;AN=84;BaseQRankSum=-10.150;DP=1941;Dels=0.00;FS=9.231;HRun=0;HaplotypeScore=1.6200;InbreedingCoeff=0.0721;MQ=59.39;MQ0=0;MQRankSum=1.033;QD=23.46;ReadPosRankSum=-2.641 GT:AD:DP:GQ:PL 0/1:25,18:43:99:477,0,711 0/1:13,29:42:99:829,0,340 0/1:22,14:36:99:369,0,599 0/1:32,55:87:99:1608,0,905 1/1:0,65:66:99:2219,178,0 0/1:33,32:65:99:876,0,969 1/1:0,45:45:99:1596,126,0 0/0:43,0:43:99:0,102,1320 0/1:14,16:30:99:437,0,391 0/1:21,11:32:99:277,0,610 1/1:0,26:26:78.21:884,78,0 1/1:0,28:28:78.21:882,78,0 0/1:19,22:41:99:533,0,530 1/1:0,34:34:96.27:1099,96,0 1/1:0,103:103:99:3279,286,0 1/1:0,49:49:99:1578,138,0 1/1:1,41:42:87.83:1318,88,0 0/1:17,20:37:99:519,0,437 0/1:28,29:57:99:735,0,741 1/1:0,61:61:99:1920,165,0 1/1:0,57:57:99:1767,153,0 0/1:23,20:43:99:501,0,655 0/0:98,0:98:99:0,250,3080 0/0:48,0:48:99:0,123,1531 0/1:25,23:48:99:684,0,714 0/1:35,15:50:99:408,0,933 0/1:19,15:34:99:406,0,570 1/1:0,41:41:99:1272,114,0 0/0:30,0:31:84.26:0,84,1029 1/1:0,54:54:99:1773,159,0 1/1:0,31:31:90.26:1054,90,0 0/1:29,23:52:99:608,0,777 1/1:0,44:44:99:1444,126,0 1/1:0,30:30:87.23:989,87,0 1/1:1,34:35:65.30:1093,65,0 1/1:0,38:38:99:1194,105,0 0/1:28,25:53:99:602,0,748 1/1:0,39:39:99:1316,114,0 0/0:39,0:39:99:0,114,1369 1/1:0,34:34:93.23:1061,93,0 0/1:13,19:32:99:465,0,370 1/1:0,42:43:99:1396,123,0 1 19423104 . A C 3383.93 . 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G C 9.56 . 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C T 13246.17 . 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C T 719.56 . 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GCCGTAGAAGCCATAACTGAGT G 423.41 . 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C T 9.43 . 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C T 703.37 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.676;DP=3346;DS;Dels=0.00;FS=0.811;HRun=0;HaplotypeScore=2.9647;InbreedingCoeff=-0.0120;MQ=59.27;MQ0=0;MQRankSum=0.006;QD=10.34;ReadPosRankSum=1.996 GT:AD:DP:GQ:PL 0/0:62,0:62:99:0,165,1759 0/0:71,0:71:99:0,195,2125 0/0:58,0:58:99:0,162,1779 0/0:159,0:159:99:0,403,4976 0/0:128,0:129:99:0,358,4223 0/0:90,0:90:99:0,250,2947 0/0:80,0:80:99:0,214,2537 0/0:87,0:87:99:0,217,2666 0/0:48,0:48:99:0,135,1498 0/0:71,0:71:99:0,198,2131 0/0:77,0:77:99:0,205,2252 0/0:61,0:61:99:0,153,1724 0/0:65,0:65:99:0,186,2021 0/0:56,0:56:99:0,159,1709 0/0:167,0:168:99:0,439,4757 0/0:60,0:60:99:0,168,1833 0/0:54,1:55:99:0,106,1424 0/0:70,0:70:99:0,195,2117 0/0:86,0:86:99:0,210,2277 0/0:108,0:108:99:0,280,3071 0/0:82,0:82:99:0,198,2224 0/1:39,28:68:99:750,0,956 0/0:143,0:144:99:0,385,4540 0/0:97,0:97:99:0,253,3035 0/0:97,0:97:99:0,262,3134 0/0:82,0:82:99:0,226,2688 0/0:54,0:54:99:0,147,1649 0/0:66,0:66:99:0,183,1994 0/0:63,0:63:99:0,150,1701 0/0:69,0:69:99:0,189,2104 0/0:72,0:72:99:0,202,2199 0/0:99,0:99:99:0,268,2998 0/0:60,0:60:99:0,165,1849 0/0:66,0:66:99:0,183,2012 0/0:51,0:51:99:0,132,1456 0/0:88,0:88:99:0,250,2682 0/0:83,0:84:99:0,219,2366 0/0:72,0:72:99:0,189,2089 0/0:67,0:67:99:0,192,2100 0/0:82,0:82:99:0,214,2323 0/0:62,1:63:99:0,134,1802 0/0:59,0:59:99:0,171,1841 1 20829802 . C T 330.03 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.957;DP=1070;Dels=0.00;FS=2.143;HRun=0;HaplotypeScore=2.6417;InbreedingCoeff=-0.0245;MQ=59.45;MQ0=0;MQRankSum=0.059;QD=8.92;ReadPosRankSum=-1.505 GT:AD:DP:GQ:PL 0/0:13,0:13:39.11:0,39,486 0/0:17,0:17:48.15:0,48,602 0/0:21,0:21:63.17:0,63,747 0/0:64,0:64:99:0,184,2415 0/0:44,0:44:99:0,129,1714 0/0:49,0:49:99:0,138,1794 0/0:47,0:47:99:0,129,1697 0/0:39,0:39:99:0,105,1370 0/1:11,9:20:99:241,0,330 0/0:11,0:11:33.11:0,33,423 0/1:11,6:17:99:152,0,358 0/0:28,0:28:84.26:0,84,1048 0/0:19,0:19:54.17:0,54,694 0/0:19,0:19:54.16:0,54,666 0/0:50,0:50:99:0,132,1682 0/0:13,0:13:36.11:0,36,461 0/0:19,0:19:54.17:0,54,701 0/0:21,0:21:63.19:0,63,786 0/0:17,0:17:48.15:0,48,595 0/0:21,0:21:57.17:0,57,720 0/0:31,0:31:84.24:0,84,1038 0/0:7,0:7:21.06:0,21,256 0/0:46,0:46:99:0,129,1704 0/0:37,0:37:99:0,102,1357 0/0:48,0:48:99:0,135,1782 0/0:36,0:36:99:0,99,1327 0/0:12,0:13:36.11:0,36,462 0/0:22,0:22:66.20:0,66,825 0/0:17,0:17:51.15:0,51,623 0/0:17,0:18:48.15:0,48,598 0/0:16,0:16:48.15:0,48,600 0/0:26,0:26:78.23:0,78,967 0/0:22,0:22:57.17:0,57,727 0/0:20,0:20:57.18:0,57,734 0/0:23,0:23:69.22:0,69,876 0/0:16,0:16:45.14:0,45,579 0/0:25,0:25:66.20:0,66,817 0/0:16,0:16:48.16:0,48,620 0/0:14,0:14:39.11:0,39,467 0/0:21,0:21:60.18:0,60,728 0/0:23,0:23:69.21:0,69,863 0/0:24,0:24:72.23:0,72,922 1 20972111 . G A 979.97 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.439;DP=1963;Dels=0.00;FS=3.906;HRun=0;HaplotypeScore=1.1853;InbreedingCoeff=-0.0244;MQ=57.50;MQ0=0;MQRankSum=0.193;QD=11.95;ReadPosRankSum=2.770 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,114,1259 0/0:35,0:35:93.24:0,93,1042 0/0:40,0:40:99:0,111,1264 0/0:104,0:104:99:0,286,3546 0/0:76,0:76:99:0,205,2520 0/0:53,0:53:99:0,141,1736 0/0:38,0:38:99:0,108,1323 0/0:44,0:44:99:0,117,1421 0/0:37,0:38:99:0,102,1168 0/0:35,0:35:93.22:0,93,1003 0/0:41,0:41:99:0,111,1283 0/0:40,0:40:99:0,111,1246 0/0:37,0:37:99:0,105,1156 0/0:39,0:39:99:0,111,1230 0/0:125,0:125:99:0,337,3795 0/0:39,0:39:99:0,111,1245 0/0:39,0:39:99:0,114,1264 0/0:29,0:29:78.20:0,78,881 0/0:55,0:56:99:0,147,1702 0/0:76,0:77:99:0,217,2455 0/0:69,0:69:99:0,162,1870 0/0:41,0:41:99:0,117,1278 0/0:64,0:64:99:0,178,2191 0/0:35,0:35:93.25:0,93,1129 0/1:25,22:47:99:611,0,696 0/0:47,0:47:99:0,117,1452 0/0:27,0:27:75.18:0,75,840 0/0:43,0:43:99:0,123,1344 0/0:27,0:27:75.18:0,75,831 0/0:42,0:42:99:0,114,1258 0/0:38,0:38:99:0,105,1188 0/0:58,0:60:99:0,156,1783 0/0:44,1:45:88.91:0,89,1314 0/0:37,0:37:99:0,102,1128 0/0:41,0:41:99:0,117,1327 0/0:44,0:44:99:0,120,1359 0/0:59,0:59:99:0,153,1730 0/0:36,0:36:99:0,99,1117 0/1:20,15:35:99:431,0,531 0/0:37,1:38:75.64:0,76,1108 0/0:28,0:29:78.21:0,78,880 0/0:33,0:33:96.26:0,96,1083 1 21036222 . T C 56.12 . AC=7;AF=0.083;AN=84;BaseQRankSum=-14.844;DP=2110;Dels=0.00;FS=302.282;HRun=2;HaplotypeScore=0.6972;InbreedingCoeff=-0.1375;MQ=57.52;MQ0=0;MQRankSum=-0.278;QD=0.12;ReadPosRankSum=-12.962 GT:AD:DP:GQ:PL 0/0:41,15:56:10.03:0,10,1040 0/0:27,20:47:6.70:0,7,607 0/0:15,8:23:36.08:0,36,401 0/0:37,47:84:10.30:0,10,872 0/0:34,25:59:78.19:0,78,904 0/0:33,29:62:48.06:0,48,918 0/0:29,18:48:33.47:0,33,615 0/0:35,19:54:22.19:0,22,821 0/0:25,10:35:57.15:0,57,644 0/0:21,9:30:51.14:0,51,583 0/0:30,11:41:39.45:0,39,675 0/0:35,25:60:4.09:0,4,631 0/0:28,4:32:57.12:0,57,638 0/0:37,14:51:67.02:0,67,941 0/1:85,78:163:57.93:58,0,2038 0/0:32,11:43:11.78:0,12,581 0/0:36,30:66:3.68:0,4,766 0/0:35,13:48:78.22:0,78,903 0/1:21,19:40:11.68:12,0,521 0/0:50,13:63:89.79:0,90,1339 0/1:37,19:56:11.49:11,0,939 0/0:30,17:47:71.60:0,72,738 0/0:44,28:72:51.68:0,52,1229 0/0:36,13:49:4.16:0,4,650 0/0:27,15:42:24.90:0,25,608 0/0:30,21:51:30.90:0,31,678 0/0:23,12:35:13.45:0,13,645 0/1:27,19:46:9.44:9,0,724 0/1:20,14:34:28.75:29,0,456 0/1:42,22:64:22.83:23,0,972 0/0:28,13:41:6.84:0,7,555 0/0:26,19:45:72.16:0,72,804 0/0:29,6:35:72.17:0,72,826 0/0:17,13:30:43.36:0,43,478 0/0:21,17:38:2.46:1,0,515 0/0:30,13:43:46.49:0,46,737 0/0:26,22:48:4.51:0,5,652 0/0:33,15:48:6.01:0,6,703 0/1:35,12:48:16.57:17,0,784 0/0:38,18:56:1.13:5,0,787 0/0:28,10:38:9.28:0,9,720 0/0:30,9:39:20.06:0,20,791 1 21042033 . T C 570.33 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.782;DP=2864;Dels=0.00;FS=5.574;HRun=1;HaplotypeScore=1.8152;InbreedingCoeff=-0.0120;MQ=59.11;MQ0=1;MQRankSum=0.926;QD=11.88;ReadPosRankSum=0.054 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,129,1576 0/0:51,0:51:99:0,144,1756 0/0:51,0:51:99:0,135,1691 0/0:141,0:142:99:0,400,4963 0/0:114,0:114:99:0,331,4111 0/0:90,0:90:99:0,244,3138 0/0:83,0:83:99:0,223,2793 0/0:97,0:97:99:0,262,3272 0/0:42,0:42:99:0,111,1391 0/0:43,0:43:99:0,120,1477 0/0:38,0:38:99:0,111,1380 0/0:43,0:43:99:0,117,1428 0/0:41,0:41:99:0,108,1352 0/0:37,0:37:99:0,108,1327 0/0:171,0:171:99:0,448,5494 0/0:55,0:55:99:0,144,1799 0/0:40,0:40:99:0,120,1449 0/0:32,0:32:87.26:0,87,1065 0/0:91,1:92:99:0,241,2985 0/0:138,0:138:99:0,349,4367 0/0:104,0:104:99:0,274,3406 0/0:67,0:67:99:0,190,2321 0/0:156,0:156:99:0,445,5531 0/0:89,0:90:99:0,259,3170 0/0:87,0:89:99:0,238,2958 0/0:57,0:57:99:0,156,1912 0/0:36,0:36:99:0,99,1208 0/0:60,1:61:99:0,166,2054 0/0:45,0:45:99:0,126,1535 0/0:49,0:49:99:0,138,1715 0/0:46,0:46:99:0,126,1560 0/0:90,0:91:99:0,238,3010 0/0:70,0:70:99:0,199,2436 0/0:60,0:60:99:0,166,2064 0/1:27,21:48:99:617,0,782 0/0:48,0:48:99:0,138,1700 0/0:90,0:90:99:0,241,2978 0/0:46,0:46:99:0,126,1580 0/0:40,0:40:99:0,111,1364 0/0:43,0:43:99:0,117,1440 0/0:34,0:34:96.30:0,96,1188 0/0:46,0:46:99:0,132,1634 1 21042094 . G A 11282.48 . AC=14;AF=0.167;AN=84;BaseQRankSum=-3.231;DP=2539;Dels=0.00;FS=3.066;HRun=0;HaplotypeScore=2.3682;InbreedingCoeff=0.1428;MQ=58.99;MQ0=0;MQRankSum=-0.159;QD=14.58;ReadPosRankSum=-1.249 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,138,1631 0/0:34,0:34:93.27:0,93,1111 0/0:36,1:37:56.28:0,56,1036 0/0:134,0:134:99:0,343,4369 0/0:109,0:109:99:0,301,3823 0/0:80,0:80:99:0,217,2721 0/0:69,0:69:99:0,175,2213 0/0:67,0:67:99:0,172,2158 0/0:43,0:43:99:0,117,1374 0/0:41,0:41:99:0,117,1370 0/0:38,0:38:99:0,108,1256 0/1:30,19:49:99:541,0,803 0/1:27,10:37:99:220,0,767 0/1:19,17:36:99:504,0,531 0/1:80,93:173:99:2396,0,1937 0/1:24,19:43:99:495,0,672 0/0:38,0:38:99:0,108,1234 1/1:1,23:24:36.56:709,37,0 1/1:0,87:87:99:2732,223,0 0/1:63,50:113:99:1347,0,1671 0/0:86,0:86:99:0,226,2671 0/0:63,0:64:99:0,165,1951 0/0:131,2:133:99:0,276,4324 0/0:75,0:75:99:0,193,2475 0/0:79,0:79:99:0,214,2731 0/0:59,0:59:99:0,147,1897 0/0:30,0:30:81.24:0,81,979 0/0:47,0:47:99:0,123,1422 0/0:41,0:41:99:0,120,1392 0/1:26,18:44:99:450,0,750 0/0:33,0:33:90.26:0,90,1060 0/0:95,0:95:99:0,253,3004 0/1:28,24:52:99:651,0,702 0/0:49,0:49:99:0,135,1604 0/0:37,0:37:93.26:0,93,1122 0/0:50,1:51:99:0,100,1472 0/1:51,25:76:99:593,0,1387 0/0:36,0:36:99:0,102,1188 0/1:18,22:40:99:644,0,477 0/0:43,0:43:99:0,108,1293 0/0:30,0:30:87.23:0,87,1021 0/0:33,0:33:90.25:0,90,1071 1 21042115 . G A 1336.68 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.009;DP=2582;Dels=0.00;FS=3.730;HRun=0;HaplotypeScore=1.1911;InbreedingCoeff=-0.0120;MQ=59.24;MQ0=1;MQRankSum=1.724;QD=13.37;ReadPosRankSum=1.419 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,147,1824 0/0:34,0:34:96.27:0,96,1157 0/0:38,0:38:99:0,99,1245 0/0:137,0:137:99:0,352,4700 0/1:51,49:100:99:1383,0,1612 0/0:73,0:73:99:0,196,2569 0/0:83,0:83:99:0,196,2647 0/0:61,0:61:99:0,166,2177 0/0:45,0:45:99:0,120,1472 0/0:41,0:41:99:0,114,1400 0/0:39,0:39:99:0,111,1336 0/0:50,0:50:99:0,141,1728 0/0:37,0:37:99:0,102,1242 0/0:42,0:42:99:0,120,1468 0/0:167,0:167:99:0,409,5243 0/0:41,0:41:99:0,120,1459 0/0:40,0:40:99:0,111,1371 0/0:26,0:26:78.24:0,78,946 0/0:100,0:100:99:0,259,3216 0/0:109,0:109:99:0,286,3564 0/0:99,0:99:99:0,238,2978 0/0:57,0:57:99:0,162,1964 0/0:138,0:138:99:0,349,4725 0/0:75,0:75:99:0,181,2427 0/0:78,0:78:99:0,205,2723 0/0:56,0:56:99:0,138,1880 0/0:29,0:29:72.23:0,72,913 0/0:41,0:41:99:0,114,1400 0/0:37,0:37:99:0,105,1290 0/0:36,0:36:99:0,99,1222 0/0:40,0:40:99:0,114,1390 0/0:99,0:99:99:0,259,3254 0/0:54,0:54:99:0,141,1791 0/0:50,0:50:99:0,141,1747 0/0:34,0:34:84.26:0,84,1056 0/0:49,0:49:99:0,126,1546 0/0:91,0:92:99:0,232,2893 0/0:45,0:45:99:0,117,1469 0/0:41,0:41:99:0,111,1397 0/0:47,0:47:99:0,129,1577 0/0:38,0:38:96.28:0,96,1195 0/0:30,0:30:84.25:0,84,1031 1 21044161 . A G 10391.90 . AC=65;AF=0.774;AN=84;BaseQRankSum=9.167;DP=404;Dels=0.00;FS=0.709;HRun=3;HaplotypeScore=0.5489;InbreedingCoeff=-0.1668;MQ=58.26;MQ0=0;MQRankSum=-0.487;QD=25.98;ReadPosRankSum=0.177 GT:AD:DP:GQ:PL 1/1:0,10:10:30.09:357,30,0 1/1:0,10:10:27.08:331,27,0 0/1:5,3:8:85.12:85,0,120 1/1:0,21:22:63.20:805,63,0 1/1:0,19:19:54.17:717,54,0 1/1:0,19:19:51.17:677,51,0 0/1:7,2:9:57.80:58,0,197 1/1:0,10:10:27.06:324,27,0 1/1:0,11:11:30.09:379,30,0 0/0:4,0:4:12.03:0,12,136 1/1:0,6:6:15.03:184,15,0 0/1:2,3:5:57.18:98,0,57 0/1:2,3:5:53.66:96,0,54 1/1:0,7:7:21.07:265,21,0 1/1:0,14:14:33.10:414,33,0 0/1:6,7:13:99:211,0,162 1/1:0,7:7:18.06:234,18,0 1/1:0,5:5:15.02:168,15,0 1/1:0,6:6:15.05:187,15,0 1/1:0,11:11:30.09:377,30,0 0/1:8,3:11:13.72:14,0,226 0/1:4,2:6:54.56:55,0,101 0/1:14,12:26:99:317,0,372 1/1:0,11:12:30.09:390,30,0 1/1:0,14:14:36.10:469,36,0 1/1:0,13:13:36.11:474,36,0 1/1:0,9:9:27.08:331,27,0 0/1:2,2:4:59.35:62,0,59 0/1:3,3:6:84.99:90,0,85 0/1:1,1:2:30.11:30,0,31 1/1:0,4:4:12.04:152,12,0 0/1:5,7:12:99:182,0,138 1/1:0,14:14:36.11:458,36,0 0/1:9,3:12:74.76:75,0,265 0/1:5,3:8:89.86:90,0,141 0/1:6,8:14:99:219,0,157 1/1:0,7:7:21.07:262,21,0 1/1:0,4:4:9.03:120,9,0 1/1:0,10:10:27.08:332,27,0 0/1:3,2:5:24.41:24,0,62 1/1:0,4:4:12.04:149,12,0 0/1:2,4:6:49.73:131,0,50 1 21049360 . C A 6.24 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.608;DP=572;Dels=0.00;FS=2.224;HRun=1;HaplotypeScore=0.5585;InbreedingCoeff=-0.0144;MQ=58.56;MQ0=0;MQRankSum=0.102;QD=0.62;ReadPosRankSum=-0.586 GT:AD:DP:GQ:PL 0/0:7,0:7:21.07:0,21,268 0/1:7,3:10:51.26:51,0,213 0/0:18,0:18:42.13:0,42,547 0/0:29,0:29:72.23:0,72,966 0/0:22,0:22:57.18:0,57,755 0/0:12,0:12:33.10:0,33,418 0/0:13,0:15:33.10:0,33,446 0/0:9,0:9:27.09:0,27,369 0/0:12,0:12:30.07:0,30,377 0/0:5,0:5:12.04:0,12,149 0/0:7,0:7:21.07:0,21,265 0/0:9,0:9:24.07:0,24,297 0/0:13,0:13:36.11:0,36,454 0/0:11,0:11:24.08:0,24,311 0/0:47,0:47:99:0,120,1552 0/0:10,0:11:30.09:0,30,375 0/0:11,0:11:24.08:0,24,324 0/0:11,0:11:27.09:0,27,359 0/0:20,0:20:54.16:0,54,662 0/0:21,0:21:51.17:0,51,680 0/0:19,0:19:48.15:0,48,618 0/0:7,0:7:18.05:0,18,223 0/0:26,0:26:66.20:0,66,886 0/0:14,0:14:36.11:0,36,484 0/0:15,0:15:36.12:0,36,503 0/0:19,0:19:48.15:0,48,649 0/0:8,0:8:21.07:0,21,274 0/0:12,0:12:33.10:0,33,408 0/0:10,0:10:24.07:0,24,306 0/0:6,0:6:15.04:0,15,189 0/0:10,0:10:27.09:0,27,344 0/0:16,0:16:39.13:0,39,509 0/0:14,0:14:33.11:0,33,433 0/0:11,0:11:33.11:0,33,424 0/0:8,0:8:24.08:0,24,308 0/0:7,0:7:21.07:0,21,266 0/0:17,0:17:48.15:0,48,611 0/0:6,0:6:18.06:0,18,222 0/0:11,0:11:27.08:0,27,327 0/0:19,0:19:45.14:0,45,586 0/0:8,0:8:24.08:0,24,301 0/0:9,0:9:24.06:0,24,283 1 21072050 . C A 756.84 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.146;DP=2505;Dels=0.00;FS=11.275;HRun=0;HaplotypeScore=1.0368;InbreedingCoeff=-0.0120;MQ=59.39;MQ0=0;MQRankSum=3.045;QD=9.70;ReadPosRankSum=0.451 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,138,1736 0/0:46,0:47:99:0,138,1694 0/0:36,0:36:99:0,99,1234 0/0:121,0:121:99:0,343,4524 0/0:121,0:121:99:0,340,4515 0/0:92,0:92:99:0,253,3328 0/0:98,0:98:99:0,271,3568 0/0:83,0:83:99:0,235,3101 0/0:44,0:44:99:0,120,1517 0/0:37,0:37:99:0,111,1363 0/0:48,1:49:99:0,132,1662 0/0:36,0:36:99:0,102,1286 0/0:46,0:46:99:0,135,1639 0/0:43,0:43:99:0,120,1449 0/0:143,0:143:99:0,376,4658 0/0:29,1:30:41.25:0,41,885 0/0:50,0:50:99:0,132,1662 0/0:41,0:41:99:0,120,1496 0/0:55,0:55:99:0,138,1701 0/0:64,0:64:99:0,172,2146 0/0:71,0:71:99:0,184,2268 0/0:38,0:38:99:0,105,1249 0/0:119,0:119:99:0,325,4330 0/0:81,0:81:99:0,217,2857 0/0:88,0:88:99:0,232,3089 0/1:49,29:78:99:803,0,1652 0/0:39,0:39:99:0,108,1356 0/0:44,0:44:99:0,132,1600 0/0:41,0:41:99:0,120,1463 0/0:45,0:45:99:0,129,1584 0/0:35,0:35:99:0,99,1203 0/0:61,0:61:99:0,169,2097 0/0:35,0:35:93.29:0,93,1164 0/0:49,0:49:99:0,141,1728 0/0:62,0:62:99:0,168,2039 0/0:49,0:49:99:0,132,1658 0/0:56,2:58:99:0,144,1766 0/0:54,0:54:99:0,150,1857 0/0:49,0:49:99:0,129,1572 0/0:38,0:38:99:0,108,1347 0/0:31,0:31:93.29:0,93,1144 0/0:52,0:53:99:0,138,1729 1 21076274 . G A 2707.80 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.258;DP=4201;DS;Dels=0.00;FS=0.784;HRun=0;HaplotypeScore=1.6825;InbreedingCoeff=-0.0244;MQ=59.21;MQ0=0;MQRankSum=1.741;QD=13.61;ReadPosRankSum=2.103 GT:AD:DP:GQ:PL 0/0:81,0:82:99:0,232,2897 0/0:83,0:84:99:0,223,2848 0/0:85,0:85:99:0,229,2927 0/0:170,0:170:99:0,445,6069 0/1:67,60:127:99:1827,0,2167 0/0:143,0:143:99:0,394,5347 0/0:134,0:134:99:0,382,5180 0/0:112,0:112:99:0,316,4270 0/0:78,0:78:99:0,220,2798 0/0:63,0:63:99:0,172,2221 0/0:71,0:71:99:0,205,2611 0/0:78,0:78:99:0,223,2816 0/0:67,0:67:99:0,187,2351 0/0:76,0:77:99:0,217,2741 0/0:231,0:231:99:0,617,7871 0/0:52,0:52:99:0,150,1922 0/0:79,0:79:99:0,226,2842 0/0:75,0:75:99:0,214,2706 0/0:121,0:122:99:0,307,3969 0/0:141,0:141:99:0,391,5039 0/0:109,0:109:99:0,283,3615 0/0:78,0:78:99:0,214,2728 0/0:171,0:171:99:0,445,6153 0/0:128,0:128:99:0,346,4698 0/0:140,0:140:99:0,367,5074 0/0:125,0:125:99:0,322,4368 0/0:64,1:65:99:0,184,2340 0/0:81,0:81:99:0,223,2831 0/0:72,0:72:99:0,199,2544 0/0:69,0:69:99:0,184,2359 0/0:73,0:73:99:0,202,2570 0/0:129,0:129:99:0,343,4465 0/0:64,0:64:99:0,175,2216 0/0:88,0:88:99:0,250,3160 0/1:38,34:72:99:943,0,1100 0/0:99,0:99:99:0,271,3453 0/0:125,0:126:99:0,325,4177 0/0:84,0:84:99:0,226,2902 0/0:64,0:64:99:0,175,2213 0/0:107,0:107:99:0,307,3849 0/0:83,0:83:99:0,229,2917 0/0:102,0:102:99:0,295,3758 1 21212723 . C CT 3994.75 . AC=29;AF=0.345;AN=84;BaseQRankSum=0.732;DP=8499;DS;FS=3200.000;HRun=2;HaplotypeScore=521.7738;InbreedingCoeff=-0.5169;MQ=58.87;MQ0=1;MQRankSum=0.575;QD=0.71;ReadPosRankSum=-29.145 GT:AD:DP:GQ:PL 0/1:194,0:194:99:297,0,2952 0/1:198,0:198:99:179,0,3090 0/1:154,0:154:1.88:2,0,2496 0/0:250,0:249:99:0,229,5110 0/1:204,46:250:25.09:25,0,4711 0/0:250,0:240:99:0,245,4743 0/0:247,0:245:51.86:0,52,4941 0/0:249,1:247:99:0,102,4754 0/1:229,0:229:12.18:12,0,3726 0/1:177,0:176:99:164,0,2769 0/1:171,0:171:99:215,0,2436 0/0:158,0:157:20.12:0,20,2224 0/0:166,0:166:12.76:0,13,2751 0/0:148,0:148:70.62:0,71,2489 0/0:250,0:250:17.30:0,17,4409 0/1:150,0:150:99:253,0,1895 0/1:193,0:193:59.82:60,0,2801 0/1:170,0:170:99:113,0,2721 0/1:233,0:233:99:299,0,3312 0/0:246,0:246:33.83:0,34,4067 0/1:223,0:222:99:133,0,3334 0/1:140,0:140:99:121,0,2010 0/0:250,0:249:48.04:0,48,4927 0/1:250,0:245:31.06:31,0,4794 0/0:250,0:236:99:0,255,5122 0/0:243,0:239:73.67:0,74,4396 0/1:148,0:148:99:112,0,2221 0/1:210,0:210:49.63:50,0,3344 0/1:165,0:165:99:100,0,2502 0/1:172,0:171:99:171,0,2609 0/0:127,52:179:47.69:0,48,3279 0/1:241,0:241:99:135,0,3540 0/1:152,0:152:99:124,0,2053 0/1:206,0:206:99:131,0,3250 0/1:221,0:221:99:283,0,3276 0/1:206,0:206:99:156,0,3657 0/1:225,0:225:44.21:44,0,3691 0/1:182,0:181:99:148,0,2841 0/1:189,0:189:99:234,0,2905 0/1:196,0:196:99:173,0,2907 0/1:191,0:191:72.18:72,0,3059 0/1:176,0:176:99:158,0,2665 1 21212725 . TGGC T 3606.58 . AC=25;AF=0.298;AN=84;BaseQRankSum=0.950;DP=7916;DS;FS=3200.000;HRun=0;HaplotypeScore=671.7929;InbreedingCoeff=-0.4288;MQ=59.26;MQ0=1;MQRankSum=0.642;QD=0.82;ReadPosRankSum=-33.285 GT:AD:DP:GQ:PL 0/1:177,0:177:99:275,0,6664 0/1:184,0:184:99:185,0,6935 0/0:140,0:140:19.27:0,19,5596 0/0:250,0:249:99:0,308,12031 0/0:207,0:207:99:0,162,11380 0/0:242,0:230:99:0,317,11189 0/0:243,0:241:94.19:0,94,11168 0/0:250,0:247:99:0,164,11042 0/0:212,0:212:6.06:0,6,8120 0/1:160,0:160:99:176,0,6189 0/1:162,0:162:99:205,0,5839 0/0:141,0:140:41.54:0,42,5061 0/0:156,0:155:27.90:0,28,6051 0/0:135,0:135:82.71:0,83,5346 0/0:228,0:228:61.48:0,61,10378 0/1:141,0:141:99:229,0,4402 0/1:183,0:183:35.30:35,0,6469 0/1:160,0:160:85.89:86,0,6139 0/1:123,0:200:99:333,0,7333 0/0:229,0:229:88.32:0,88,9248 0/1:196,0:195:99:117,0,7371 0/1:133,0:133:99:100,0,4592 0/0:192,58:249:99:0,113,11369 0/0:248,0:243:41.48:0,41,11497 0/0:248,0:233:99:0,346,12340 0/0:242,0:238:99:0,117,10547 0/1:131,0:131:99:103,0,4892 0/1:195,0:195:35.31:35,0,7498 0/1:148,0:148:87.65:88,0,5443 0/1:162,0:161:99:167,0,5803 0/0:120,0:120:74.22:0,74,6962 0/1:234,0:234:99:127,0,7996 0/1:142,0:142:99:100,0,4700 0/1:187,0:187:99:119,0,7063 0/1:206,0:206:99:259,0,7587 0/1:200,0:200:99:135,0,8085 0/1:196,0:196:41.04:41,0,8355 0/1:178,0:177:99:134,0,6831 0/1:104,70:174:99:240,0,6468 0/1:182,0:182:99:121,0,6604 0/1:179,0:179:34.13:34,0,6663 0/1:103,62:165:99:163,0,6036 1 21212726 . G T 1521.04 . AC=18;AF=0.214;AN=84;BaseQRankSum=-31.256;DP=7916;DS;Dels=0.03;FS=3200.000;HRun=2;HaplotypeScore=35.2313;InbreedingCoeff=-0.2808;MQ=59.26;MQ0=1;MQRankSum=-0.500;QD=0.49;ReadPosRankSum=-31.451 GT:AD:DP:GQ:PL 0/1:101,76:177:99:109,0,2956 0/1:104,80:184:43.97:44,0,3125 0/0:86,54:140:50.60:0,51,2711 0/0:175,75:250:99:0,271,6459 0/0:175,32:207:99:0,461,6349 0/0:167,74:242:99:0,265,5742 0/0:165,78:243:99:0,119,5832 0/0:162,88:250:99:0,158,5626 0/0:121,91:212:82.85:0,83,3923 0/1:93,67:160:82.45:82,0,2792 0/1:89,73:162:99:165,0,2548 0/0:81,60:141:31.08:0,31,2416 0/0:90,65:155:99:0,104,2949 0/0:82,53:135:99:0,123,2626 0/0:157,71:228:37.11:0,37,4876 0/1:68,73:141:99:221,0,2049 0/0:101,82:183:2.49:0,2,2998 0/1:91,68:160:48.06:48,0,2827 0/0:115,8:123:99:0,319,3880 0/0:144,85:229:12.26:0,12,4244 0/1:115,80:196:99:125,0,3313 0/1:69,64:133:96.10:96,0,2183 0/0:172,20:192:99:0,491,6452 0/0:173,75:248:64.50:0,64,5921 0/0:180,66:248:99:0,310,6428 0/0:159,83:242:99:0,177,5512 0/1:74,57:131:99:102,0,2257 0/0:112,83:195:49.08:0,49,3489 0/1:86,62:148:91.36:91,0,2526 0/1:88,74:162:51.06:51,0,2488 0/0:110,10:120:99:0,273,3687 0/1:127,107:234:40.12:40,0,3759 0/1:77,65:142:59.62:60,0,2022 0/1:104,83:187:99:136,0,3231 0/1:115,91:206:99:124,0,3452 0/1:122,78:200:47.38:47,0,3705 0/0:125,70:196:86.35:0,86,3915 0/0:107,71:178:25.78:0,26,3149 0/0:95,9:104:99:0,277,3425 0/1:100,81:182:99:117,0,3124 0/1:97,82:179:28.26:28,0,3076 0/0:92,11:103:99:0,192,3051 1 21795288 . C T 6470.31 . AC=3;AF=0.036;AN=84;BaseQRankSum=7.603;DP=6042;DS;Dels=0.00;FS=7.454;HRun=0;HaplotypeScore=3.5919;InbreedingCoeff=-0.0370;MQ=58.65;MQ0=7;MQRankSum=2.377;QD=15.01;ReadPosRankSum=2.317 GT:AD:DP:GQ:PL 0/0:138,0:138:99:0,397,4452 0/0:151,1:152:99:0,367,4526 0/0:118,0:119:99:0,307,3497 0/0:175,0:175:99:0,490,5910 0/0:160,0:160:99:0,460,5566 0/0:137,0:137:99:0,373,4544 0/0:124,0:124:99:0,349,4260 0/0:134,0:134:99:0,379,4626 0/0:134,0:134:99:0,367,4132 0/0:114,0:114:99:0,313,3513 0/0:130,0:130:99:0,367,4283 0/0:117,0:118:99:0,322,3651 0/1:53,48:101:99:1318,0,1426 0/0:131,0:131:99:0,367,4202 0/0:246,0:247:99:0,683,7773 0/0:128,0:129:99:0,337,3896 0/0:125,2:127:99:0,262,3635 0/0:132,0:132:99:0,358,4046 0/0:202,0:204:99:0,541,6294 0/0:229,0:229:99:0,617,7050 0/0:219,0:219:99:0,590,6755 0/0:120,0:120:99:0,328,3739 0/1:82,90:172:99:2672,0,2392 0/0:121,0:121:99:0,340,4185 0/0:142,0:142:99:0,388,4740 0/0:143,0:143:99:0,412,4979 0/0:93,0:93:99:0,262,2988 0/0:130,0:130:99:0,352,3951 0/0:117,0:117:99:0,331,3702 0/0:123,0:123:99:0,322,3728 0/0:131,0:131:99:0,370,4162 0/0:227,0:227:99:0,614,7055 0/1:74,84:158:99:2480,0,1942 0/0:147,0:147:99:0,415,4690 0/0:115,0:115:99:0,310,3523 0/0:129,0:130:99:0,355,4072 0/0:212,1:213:99:0,526,6314 0/0:127,0:128:99:0,343,3999 0/0:108,0:109:99:0,286,3267 0/0:128,0:128:99:0,340,3835 0/0:106,0:106:99:0,295,3262 0/0:133,1:134:99:0,335,4117 1 21795375 . C T 1450.04 . 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A G 44736.48 . 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G A 13778.22 . AC=44;AF=0.524;AN=84;BaseQRankSum=-7.765;DP=3895;DS;Dels=0.00;FS=26.844;HRun=1;HaplotypeScore=1.6384;InbreedingCoeff=-0.6222;MQ=21.74;MQ0=1287;MQRankSum=-1.702;QD=3.85;ReadPosRankSum=0.987 GT:AD:DP:GQ:PL 0/1:49,35:85:99:381,0,575 0/1:47,30:77:99:357,0,588 0/1:32,44:76:99:416,0,475 0/1:58,31:89:99:358,0,529 0/1:81,20:101:99:225,0,1257 0/1:97,18:115:39.07:39,0,1360 0/1:91,20:111:78.65:79,0,1188 0/1:76,28:104:99:243,0,1157 0/1:34,39:75:99:572,0,289 1/1:12,36:48:66.08:647,66,0 0/1:79,16:95:40.14:40,0,1027 0/1:64,18:82:99:113,0,593 0/0:82,0:82:99:0,129,1321 0/1:68,17:85:48.25:48,0,730 0/1:91,113:204:99:1301,0,761 0/1:31,33:64:99:243,0,440 1/1:16,43:60:21.38:415,21,0 0/1:59,44:103:99:464,0,953 0/1:43,60:103:99:624,0,453 0/1:113,41:154:99:294,0,1509 1/1:17,64:82:75.11:764,75,0 0/1:40,32:72:99:234,0,523 0/0:111,0:111:99:0,171,1812 0/1:75,19:94:99:119,0,1245 0/0:127,0:127:99:0,198,2058 0/1:76,19:95:99:139,0,1322 0/1:51,19:70:99:123,0,490 0/1:69,21:90:99:218,0,857 0/1:45,11:56:21.87:22,0,488 1/1:20,32:52:36.02:334,36,0 0/1:25,43:68:99:445,0,312 1/1:25,90:116:99:1443,141,0 0/1:49,15:64:20.17:20,0,932 0/1:75,19:94:99:157,0,877 0/1:39,45:84:99:517,0,365 0/1:84,20:104:52.55:53,0,1300 0/1:77,64:141:99:705,0,1063 0/1:48,52:100:99:417,0,793 0/1:76,29:105:99:255,0,933 0/1:41,48:89:99:396,0,633 0/1:81,15:96:58.99:59,0,1051 0/1:34,38:72:99:500,0,428 1 21808207 . A C 10217.96 . 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T C 7614.65 . AC=42;AF=0.500;AN=84;BaseQRankSum=19.172;DP=4125;DS;Dels=0.00;FS=135.100;HRun=0;HaplotypeScore=0.7976;InbreedingCoeff=-0.4828;MQ=15.06;MQ0=2184;MQRankSum=-0.024;QD=2.14;ReadPosRankSum=3.156 GT:AD:DP:GQ:PL 0/1:57,24:81:99:141,0,355 0/1:35,22:57:99:204,0,230 0/1:34,26:60:99:153,0,260 0/1:99,14:113:7.24:7,0,960 0/0:91,20:111:31.09:0,31,917 0/1:110,18:128:4.27:4,0,946 0/1:103,14:118:16.27:16,0,864 0/1:78,18:96:48.32:48,0,563 0/1:39,39:78:99:239,0,156 1/1:25,35:60:24.03:238,24,0 0/1:99,14:114:30.99:31,0,888 0/1:65,17:82:99:163,0,467 0/0:68,16:84:78.05:0,78,719 0/0:69,10:79:18.70:0,19,560 0/1:106,107:213:99:1234,0,317 0/1:44,26:70:99:244,0,390 1/1:31,46:77:30.01:267,30,0 0/1:57,42:99:99:407,0,461 0/1:62,45:107:99:539,0,210 0/1:136,21:157:99:114,0,798 1/1:35,66:101:63.04:586,63,0 0/1:33,30:63:99:136,0,216 0/0:112,20:132:98.69:0,99,1180 0/1:94,15:109:1.26:1,0,1005 0/0:168,0:168:99:0,165,1669 0/1:82,11:93:94.40:94,0,649 0/1:68,13:81:91.02:91,0,396 0/1:106,23:129:96.01:96,0,928 0/1:73,14:87:35.41:35,0,517 1/1:26,36:62:30.02:279,30,0 0/1:29,32:61:99:239,0,133 1/1:43,41:84:42.02:380,42,0 0/1:30,28:58:20.34:20,0,207 0/1:94,16:110:99:102,0,679 0/1:45,30:75:99:287,0,221 0/1:95,27:122:99:149,0,860 0/1:83,42:126:99:271,0,625 0/1:39,32:71:99:100,0,313 0/1:104,27:131:99:203,0,849 0/1:45,38:83:99:274,0,408 0/1:97,15:112:25.31:25,0,748 0/1:54,29:83:99:192,0,420 1 21809667 . C G 2479.56 . 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T C 19937.34 . AC=53;AF=0.631;AN=84;BaseQRankSum=37.719;DP=4182;DS;Dels=0.00;FS=2165.650;HRun=0;HaplotypeScore=1.6482;InbreedingCoeff=0.4378;MQ=33.20;MQ0=95;MQRankSum=6.051;QD=8.62;ReadPosRankSum=-3.348 GT:AD:DP:GQ:PL 1/1:0,27:27:69.15:741,69,0 1/1:0,28:28:75.11:769,75,0 1/1:2,24:26:13.83:618,14,0 0/0:230,15:246:99:0,148,5803 0/0:227,17:244:99:0,163,5759 0/0:218,17:235:93.14:0,93,5570 0/1:199,26:229:99:165,0,4825 0/1:214,21:235:34.23:34,0,5076 1/1:0,23:23:54.13:579,54,0 1/1:0,24:24:63.16:685,63,0 0/0:96,9:105:35.26:0,35,2370 0/1:109,15:124:99:111,0,2778 0/1:72,18:90:99:305,0,1737 0/1:100,12:112:56.92:57,0,2463 1/1:1,83:86:99:2444,204,0 1/1:1,25:26:47.47:732,47,0 1/1:1,28:30:36.91:706,37,0 1/1:0,31:31:90.16:932,90,0 1/1:1,50:55:99:1333,102,0 0/1:153,20:175:99:159,0,3743 1/1:1,43:44:80.60:1114,81,0 1/1:1,25:26:44.50:719,44,0 0/0:222,17:239:95.77:0,96,5627 0/0:212,19:231:57.04:0,57,5109 0/0:250,0:250:99:0,673,7028 0/1:184,27:211:99:149,0,4394 0/1:90,9:101:12.93:13,0,2221 0/0:118,12:131:89.81:0,90,2989 0/0:80,4:88:99:0,101,2108 1/1:0,19:25:51.13:557,51,0 1/1:0,24:24:60.08:603,60,0 1/1:0,31:36:81.20:879,81,0 1/1:1,17:18:17.46:439,17,0 0/1:95,17:112:99:199,0,2384 1/1:0,24:25:63.16:685,63,0 0/0:91,10:101:26.73:0,27,2337 1/1:0,48:48:99:1373,126,0 1/1:1,31:32:56.54:854,57,0 0/1:105,17:122:99:181,0,2599 1/1:0,30:30:81.15:835,81,0 0/1:96,12:108:70.75:71,0,2322 1/1:0,29:29:84.20:898,84,0 1 21809850 . T C 487.17 . AC=6;AF=0.071;AN=84;BaseQRankSum=0.857;DP=7171;DS;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.3525;InbreedingCoeff=0.1974;MQ=8.32;MQ0=6289;MQRankSum=4.058;QD=0.57;ReadPosRankSum=-0.657 GT:AD:DP:GQ:PL 0/0:69,76:145:12.02:0,12,130 0/0:74,57:131:6.02:0,6,73 0/0:77,69:147:9:0,9,93 0/0:164,85:249:99:0,144,1324 0/0:151,91:242:99:0,168,1566 0/0:133,100:233:99:0,132,1266 0/0:154,23:177:99:0,102,953 0/0:127,73:200:84.03:0,84,757 0/0:94,34:128:15.02:0,15,162 0/0:112,0:112:9.01:0,9,99 0/0:80,68:148:57.08:0,57,587 0/0:79,62:141:45.03:0,45,411 0/0:83,50:133:27.03:0,27,271 0/0:120,44:165:54.03:0,54,499 0/0:157,93:250:6.01:0,6,64 0/0:66,64:131:21.01:0,21,211 0/0:130,30:160:21.05:0,21,244 0/0:76,66:142:9.01:0,9,83 0/0:172,47:220:12.03:0,12,140 0/0:191,56:247:99:0,102,948 1/1:0,201:201:30.07:337,30,0 0/1:28,81:109:48.83:49,0,112 0/0:146,100:247:99:0,126,1141 0/0:131,85:216:99:0,108,1006 0/0:147,92:239:99:0,213,1902 0/0:131,73:204:84.04:0,84,770 0/0:100,26:126:63.03:0,63,573 0/0:89,60:149:75.04:0,75,678 0/0:129,39:168:72.06:0,72,680 0/0:100,28:128:18.03:0,18,185 0/0:57,58:115:12.01:0,12,120 0/1:104,95:199:73.40:73,0,150 0/0:102,34:136:12.03:0,12,133 0/1:62,111:173:31.26:31,0,478 0/1:54,112:166:61.13:107,0,61 0/0:103,62:165:57.07:0,57,565 0/0:106,88:194:18.03:0,18,190 0/0:73,68:141:3:0,3,26 0/0:104,45:149:78.04:0,78,709 0/0:93,74:167:21.05:0,21,240 0/0:72,59:131:45.02:0,45,402 0/0:80,67:147:12.03:0,12,140 1 21900171 . A G 3088.63 . AC=10;AF=0.119;AN=84;BaseQRankSum=-7.474;DP=1432;Dels=0.00;FS=1.674;HRun=4;HaplotypeScore=1.0316;InbreedingCoeff=-0.1351;MQ=58.87;MQ0=0;MQRankSum=-0.477;QD=11.97;ReadPosRankSum=-3.077 GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,102,1231 0/0:34,0:34:93.29:0,93,1132 0/0:37,0:37:99:0,99,1228 0/0:51,0:51:99:0,138,1702 0/0:47,0:47:99:0,138,1726 0/1:14,15:29:99:379,0,466 0/1:5,10:15:99:262,0,145 0/1:13,10:23:99:226,0,365 0/1:17,11:28:99:254,0,493 0/0:16,0:16:42.11:0,42,503 0/1:12,14:26:99:359,0,363 0/0:28,0:28:75.23:0,75,928 0/0:25,0:25:72.21:0,72,890 0/0:31,0:31:90.27:0,90,1094 0/0:78,1:79:99:0,169,2378 0/0:29,0:29:81.24:0,81,979 0/1:15,13:28:99:361,0,438 0/0:31,0:31:81.24:0,81,993 0/0:50,0:50:99:0,129,1588 0/0:61,0:61:99:0,153,1881 0/0:59,0:59:99:0,159,1977 0/0:31,1:32:51.75:0,52,948 0/0:50,0:50:99:0,132,1605 0/0:23,0:23:60.19:0,60,755 0/0:32,0:32:84.26:0,84,1059 0/0:31,0:31:81.25:0,81,1026 0/1:7,9:16:99:219,0,173 0/1:14,21:35:99:510,0,410 0/0:19,0:19:57.18:0,57,691 0/0:34,0:34:96.27:0,96,1168 0/0:38,0:38:99:0,108,1310 0/0:42,0:42:99:0,117,1447 0/0:25,0:25:75.23:0,75,913 0/0:27,0:27:75.24:0,75,943 0/0:39,0:39:99:0,105,1312 0/0:32,0:32:81.22:0,81,979 0/1:17,18:36:99:462,0,530 0/1:12,9:21:99:192,0,370 0/0:38,0:38:99:0,108,1275 0/0:37,0:37:96.29:0,96,1199 0/0:33,0:33:87.27:0,87,1094 0/0:30,0:30:87.28:0,87,1087 1 21904108 . G T 339.71 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.397;DP=639;Dels=0.00;FS=1.521;HRun=0;HaplotypeScore=0.4216;InbreedingCoeff=-0.0249;MQ=58.89;MQ0=0;MQRankSum=0.244;QD=13.07;ReadPosRankSum=-0.977 GT:AD:DP:GQ:PL 0/0:13,0:13:39.12:0,39,470 0/0:14,0:14:39.12:0,39,465 0/0:12,0:12:33.08:0,33,387 0/0:30,0:30:90.27:0,90,1157 0/0:27,0:27:69.22:0,69,917 0/0:10,0:10:30.09:0,30,376 0/0:11,0:11:33.09:0,33,399 0/0:17,0:17:51.16:0,51,653 0/0:9,0:9:27.07:0,27,313 0/0:13,0:13:36.11:0,36,430 0/0:12,0:12:36.11:0,36,439 0/0:18,0:18:54.17:0,54,662 0/0:10,0:10:30.09:0,30,366 0/0:17,1:18:48.14:0,48,582 0/0:28,0:28:81.23:0,81,992 0/0:14,0:15:39.12:0,39,485 0/0:17,0:17:51.13:0,51,602 0/1:6,6:12:99:183,0,176 0/1:7,7:14:99:219,0,216 0/0:34,0:34:93.29:0,93,1167 0/0:16,0:16:42.13:0,42,508 0/0:16,0:16:48.12:0,48,567 0/0:25,0:25:69.16:0,69,831 0/0:8,0:8:24.07:0,24,301 0/0:20,0:20:51.16:0,51,657 0/0:9,0:9:24.07:0,24,293 0/0:12,0:12:33.09:0,33,382 0/0:12,0:12:33.10:0,33,404 0/0:6,0:6:18.05:0,18,213 0/0:7,0:7:21.07:0,21,265 0/0:11,0:11:33.10:0,33,404 0/0:14,0:14:39.09:0,39,450 0/0:22,0:22:63.18:0,63,766 0/0:14,0:14:42.13:0,42,525 0/0:13,0:14:39.11:0,39,450 0/0:11,0:11:30.09:0,30,353 0/0:20,0:20:51.15:0,51,598 0/0:14,0:14:42.12:0,42,495 0/0:13,0:13:36.10:0,36,429 0/0:18,0:18:51.15:0,51,629 0/0:13,0:13:39.11:0,39,472 0/0:10,0:10:27.08:0,27,337 1 21904131 . T C 3664.67 . AC=19;AF=0.226;AN=84;BaseQRankSum=6.864;DP=533;Dels=0.00;FS=7.124;HRun=2;HaplotypeScore=0.3533;InbreedingCoeff=0.1181;MQ=58.62;MQ0=0;MQRankSum=0.955;QD=18.05;ReadPosRankSum=-0.393 GT:AD:DP:GQ:PL 0/1:6,4:10:99:127,0,184 0/1:6,7:13:99:211,0,178 0/0:10,0:10:30.07:0,30,339 0/1:10,8:18:99:248,0,285 0/1:13,14:27:99:367,0,379 0/0:9,0:9:18.04:0,18,204 0/0:5,0:5:15.03:0,15,173 0/0:14,0:14:39.12:0,39,468 1/1:0,7:7:21.05:248,21,0 0/1:3,6:9:75.81:192,0,76 1/1:0,12:12:33.10:405,33,0 0/1:5,7:12:99:228,0,149 0/1:4,3:7:59.10:59,0,122 0/0:17,0:17:48.15:0,48,579 0/1:14,12:26:99:334,0,322 1/1:0,14:14:36.11:454,36,0 0/1:11,1:13:3.21:3,0,354 0/0:8,0:8:24.06:0,24,271 0/0:13,0:13:39.12:0,39,471 0/0:32,0:32:81.22:0,81,975 0/0:13,0:14:33.10:0,33,402 0/0:12,0:12:33.10:0,33,391 0/0:22,0:22:63.18:0,63,738 0/0:4,0:4:9.03:0,9,112 0/0:17,0:17:48.15:0,48,580 0/0:9,0:9:27.08:0,27,315 0/1:3,8:11:70.84:265,0,71 0/0:12,0:12:33.09:0,33,379 0/1:3,3:6:91.97:96,0,92 0/0:4,0:4:12.04:0,12,145 0/0:6,0:6:18.05:0,18,216 0/0:17,0:17:45.13:0,45,542 0/0:17,0:17:51.13:0,51,594 0/0:11,0:11:30.09:0,30,372 0/0:9,0:9:21.06:0,21,249 0/0:11,0:11:27.08:0,27,325 0/0:20,0:20:57.14:0,57,663 0/0:9,0:9:27.08:0,27,316 0/1:3,9:12:73.02:300,0,73 0/0:19,0:19:54.16:0,54,645 0/0:9,0:9:27.07:0,27,308 0/1:1,5:6:21.09:127,0,21 1 21932618 . T G 136.97 . AC=11;AF=0.141;AN=78;BaseQRankSum=-9.267;DP=353;Dels=0.00;FS=160.111;HRun=2;HaplotypeScore=0.2200;InbreedingCoeff=-0.2371;MQ=58.29;MQ0=0;MQRankSum=1.064;QD=1.52;ReadPosRankSum=-7.469 GT:AD:DP:GQ:PL 0/0:4,1:5:9.01:0,9,99 0/1:1,5:6:19.65:50,0,20 0/0:8,0:8:24.07:0,24,288 0/1:6,9:15:30.48:30,0,162 0/0:13,5:18:38.96:0,39,455 0/0:9,1:10:27.08:0,27,322 0/0:3,2:5:9.02:0,9,105 0/0:6,5:11:18.05:0,18,207 0/0:8,2:10:1.91:3,0,240 0/1:3,3:6:9.66:10,0,84 0/0:2,1:3:6.02:0,6,68 0/1:5,2:7:6.64:7,0,131 0/0:4,1:5:12.04:0,12,149 0/1:2,3:5:48.13:48,0,63 0/0:15,5:20:40.89:0,41,431 ./. 0/1:6,4:10:5.65:6,0,155 0/0:1,1:2:3.01:0,3,38 0/1:6,4:10:7.59:8,0,189 0/0:11,6:17:29.79:0,30,310 0/0:10,2:12:30.05:0,30,338 0/0:4,6:10:12.04:0,12,145 0/0:10,7:17:1.69:3,0,313 0/0:6,1:7:18.05:0,18,209 0/1:8,4:12:16.44:16,0,211 ./. 0/0:9,3:12:26.91:0,27,297 0/1:3,2:5:19.53:20,0,86 0/0:1,0:1:3.01:0,3,34 0/1:5,5:10:43.94:44,0,163 0/0:3,2:5:8.24:0,8,72 0/0:9,9:18:0.39:0,0,249 0/0:4,4:9:11.07:0,11,115 ./. 0/0:6,2:8:17.92:0,18,193 0/0:2,0:2:6.02:0,6,70 0/0:7,4:11:21.06:0,21,248 0/0:2,0:2:6.02:0,6,70 0/0:7,2:9:18.05:0,18,205 0/0:7,3:10:2.37:0,2,209 0/1:2,2:4:12.66:13,0,66 0/0:5,2:7:1.56:4,0,167 1 21932625 . G A 30.73 . AC=5;AF=0.060;AN=84;BaseQRankSum=0.299;DP=261;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4796;InbreedingCoeff=-0.1000;MQ=57.86;MQ0=0;MQRankSum=-0.462;QD=1.14;ReadPosRankSum=-0.272 GT:AD:DP:GQ:PL 0/0:4,0:4:12.04:0,12,144 0/0:2,0:2:3:0,3,27 0/0:9,0:9:27.08:0,27,338 0/0:8,0:8:21.07:0,21,261 0/0:11,1:12:30.10:0,30,388 0/0:9,0:9:24.07:0,24,299 0/0:2,0:2:6.01:0,6,67 0/0:9,0:9:18.06:0,18,234 0/0:8,0:8:18.05:0,18,208 0/0:9,0:9:24.04:0,24,244 0/0:2,0:2:3.01:0,3,39 0/0:8,0:8:21.06:0,21,250 0/0:4,0:4:12.04:0,12,154 0/0:3,0:3:9.03:0,9,109 0/0:14,0:14:36.11:0,36,450 0/0:3,0:3:6.02:0,6,70 0/0:6,0:6:15.04:0,15,178 0/1:1,1:2:29.23:29,0,33 0/0:3,0:4:9.02:0,9,98 0/0:13,0:13:33.09:0,33,392 0/0:10,0:10:27.05:0,27,307 0/0:6,0:6:12.04:0,12,144 0/0:11,0:11:33.11:0,33,430 0/0:5,0:5:12.04:0,12,162 0/1:9,2:11:15.24:15,0,254 0/0:2,0:2:6.01:0,6,68 0/0:9,0:9:27.07:0,27,320 0/0:3,0:3:9.02:0,9,104 0/0:2,0:2:6.01:0,6,63 0/0:8,0:8:18.04:0,18,205 0/0:3,0:3:6.02:0,6,73 0/0:13,0:13:27.07:0,27,302 0/1:4,1:6:25.77:26,0,87 0/0:1,0:1:3.01:0,3,31 0/1:5,1:6:22.75:23,0,132 0/1:1,1:2:18.68:31,0,19 0/0:7,0:7:21.05:0,21,246 0/0:3,0:3:9.02:0,9,99 0/0:6,0:6:18.04:0,18,202 0/0:8,0:8:21.06:0,21,254 0/0:3,0:3:9.03:0,9,104 0/0:5,0:5:15.05:0,15,192 1 21943820 . G A 3446.34 . AC=22;AF=0.262;AN=84;BaseQRankSum=-5.773;DP=386;Dels=0.00;FS=3.929;HRun=0;HaplotypeScore=0.2138;InbreedingCoeff=0.0094;MQ=59.24;MQ0=0;MQRankSum=3.195;QD=18.04;ReadPosRankSum=0.882 GT:AD:DP:GQ:PL 0/1:5,4:9:95.93:96,0,139 1/1:0,18:18:45.14:552,45,0 0/1:4,2:6:53.28:53,0,135 1/1:0,5:5:12.04:155,12,0 0/1:2,9:11:52.90:263,0,53 0/0:5,0:5:15.05:0,15,197 0/1:3,3:6:95.29:95,0,107 0/0:7,0:7:18.04:0,18,211 0/0:5,0:5:12.04:0,12,150 0/1:3,3:6:68.29:68,0,96 0/1:5,5:10:99:128,0,124 0/0:9,0:9:27.07:0,27,316 0/0:4,0:4:12.04:0,12,156 0/0:9,0:9:24.08:0,24,315 0/1:11,7:19:99:174,0,338 0/1:6,3:9:82.04:82,0,203 0/0:16,0:16:42.14:0,42,544 0/1:2,8:10:13.72:240,0,14 0/0:13,0:13:27.06:0,27,322 0/0:14,0:14:33.10:0,33,429 0/1:6,2:8:55.05:55,0,138 0/0:6,0:6:15.05:0,15,193 0/1:10,8:18:99:192,0,352 0/0:5,0:5:15.05:0,15,206 0/1:2,8:10:44.16:233,0,44 0/0:2,0:2:6.01:0,6,66 0/0:3,0:3:9.03:0,9,113 0/0:10,0:10:24.08:0,24,311 0/0:7,0:7:21.07:0,21,267 0/0:13,0:13:36.11:0,36,447 0/0:6,0:6:18.06:0,18,218 1/1:0,15:15:42.13:518,42,0 0/1:5,3:8:78.84:79,0,129 0/0:6,0:6:18.06:0,18,221 0/1:4,5:9:98.48:135,0,98 0/0:7,0:7:21.06:0,21,258 0/0:24,0:24:63.18:0,63,769 0/0:7,0:7:18.06:0,18,233 0/0:8,0:8:24.08:0,24,297 0/1:3,6:9:6.61:197,0,7 0/0:9,0:9:24.08:0,24,311 0/1:1,4:5:21.08:131,0,21 1 21945530 . C T 451.65 . AC=6;AF=0.071;AN=84;BaseQRankSum=-1.703;DP=408;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3840;InbreedingCoeff=-0.1024;MQ=58.44;MQ0=0;MQRankSum=-0.537;QD=6.55;ReadPosRankSum=0.385 GT:AD:DP:GQ:PL 0/1:5,3:8:63.79:64,0,133 0/1:5,3:8:18.93:19,0,153 0/0:9,0:9:27.07:0,27,308 0/1:9,7:17:99:163,0,225 0/1:9,6:16:99:149,0,224 0/0:14,1:16:1.95:2,0,405 0/0:5,0:5:9.02:0,9,110 0/0:9,0:9:27.08:0,27,322 0/0:10,0:10:24.07:0,24,297 0/0:11,0:11:27.04:0,27,284 0/1:7,4:11:84.59:85,0,146 0/0:8,0:8:24.06:0,24,266 0/0:4,0:4:9.02:0,9,103 0/0:6,0:6:18.02:0,18,185 0/0:31,0:31:72.18:0,72,829 0/0:4,0:4:9.02:0,9,102 0/0:7,0:7:18.05:0,18,211 0/0:6,0:6:18.05:0,18,220 0/0:11,0:11:24.06:0,24,276 0/0:18,0:18:42.11:0,42,501 0/0:12,0:12:24.07:0,24,305 0/0:11,0:11:27.08:0,27,327 0/0:28,0:28:69.19:0,69,855 0/0:3,0:3:9.03:0,9,114 0/0:6,0:6:15.05:0,15,202 0/0:8,0:8:21.07:0,21,269 0/0:5,0:5:15.04:0,15,175 0/0:5,0:5:15.03:0,15,158 0/0:15,0:15:39.08:0,39,431 0/0:3,0:3:6.01:0,6,70 0/0:5,0:5:12.02:0,12,131 0/0:20,0:20:51.13:0,51,596 0/0:7,0:7:18.06:0,18,228 0/0:7,0:7:18.03:0,18,193 0/0:7,0:7:18.03:0,18,186 0/0:6,0:6:15.02:0,15,177 0/0:10,0:10:21.05:0,21,247 0/0:9,0:9:27.07:0,27,306 0/0:9,0:9:24.05:0,24,290 0/0:6,0:6:18.04:0,18,191 0/0:2,0:2:6:0,6,59 0/1:5,4:9:75.42:75,0,115 1 21952884 . G A 2894 . AC=4;AF=0.048;AN=84;BaseQRankSum=-8.386;DP=3415;DS;Dels=0.00;FS=6.711;HRun=0;HaplotypeScore=1.7102;InbreedingCoeff=-0.0500;MQ=59.42;MQ0=0;MQRankSum=0.797;QD=8.88;ReadPosRankSum=-0.904 GT:AD:DP:GQ:PL 0/0:70,0:71:99:0,190,2275 0/0:74,1:75:99:0,172,2423 0/0:61,0:61:99:0,169,2092 0/0:113,1:114:99:0,279,3991 0/0:110,1:111:99:0,264,3798 0/0:80,0:80:99:0,214,2808 0/0:70,0:70:99:0,187,2451 0/0:64,0:64:99:0,166,2193 0/0:75,0:75:99:0,214,2578 0/0:79,0:79:99:0,223,2707 0/0:66,0:66:99:0,175,2177 0/1:23,20:43:99:507,0,584 0/1:29,25:55:99:615,0,809 0/0:56,0:56:99:0,150,1839 0/1:104,63:168:99:1563,0,2786 0/0:55,0:55:99:0,159,1897 0/1:46,14:60:99:296,0,1427 0/0:53,0:53:99:0,141,1729 0/0:123,0:126:99:0,331,3960 0/0:136,0:136:99:0,358,4416 0/0:130,0:130:99:0,349,4298 0/0:82,0:82:99:0,217,2655 0/0:141,0:141:99:0,370,4972 0/0:70,0:72:99:0,193,2514 0/0:81,0:81:99:0,226,2985 0/0:81,0:81:99:0,202,2614 0/0:60,0:60:99:0,162,2030 0/0:66,0:66:99:0,181,2207 0/0:63,1:64:99:0,131,1967 0/0:80,0:80:99:0,211,2552 0/0:82,0:82:99:0,214,2652 0/0:120,0:120:99:0,310,3816 0/0:102,0:102:99:0,283,3461 0/0:57,0:57:99:0,165,2020 0/0:64,0:64:99:0,174,2110 0/0:66,0:66:99:0,178,2170 0/0:125,0:126:99:0,340,4121 0/0:67,0:67:99:0,175,2158 0/0:61,0:61:99:0,181,2164 0/0:77,0:77:99:0,208,2476 0/0:67,0:67:99:0,180,2171 0/0:51,0:51:99:0,147,1747 1 22050466 . A T 2136.61 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.735;DP=4114;DS;Dels=0.00;FS=5.597;HRun=1;HaplotypeScore=1.1307;InbreedingCoeff=-0.0244;MQ=59.46;MQ0=0;MQRankSum=0.700;QD=13.61;ReadPosRankSum=-1.675 GT:AD:DP:GQ:PL 0/0:96,0:96:99:0,277,3325 0/0:89,0:89:99:0,247,3013 0/0:72,0:72:99:0,202,2450 0/0:184,0:184:99:0,494,6077 0/0:149,0:149:99:0,418,5154 0/0:152,0:152:99:0,418,5288 0/0:146,0:146:99:0,403,5044 0/0:166,0:166:99:0,457,5627 0/0:88,0:88:99:0,235,2863 0/0:79,0:79:99:0,211,2574 0/0:83,0:83:99:0,238,2850 0/0:74,0:74:99:0,196,2413 0/0:78,0:78:99:0,214,2566 0/0:65,0:65:99:0,184,2208 0/0:229,0:229:99:0,602,7340 0/0:57,0:57:99:0,156,1898 0/0:79,0:79:99:0,208,2578 0/0:69,0:69:99:0,196,2370 0/0:106,0:106:99:0,292,3567 0/0:113,0:113:99:0,304,3719 0/0:115,0:115:99:0,325,3942 0/0:78,0:78:99:0,208,2525 0/0:173,0:173:99:0,472,5803 0/0:126,0:126:99:0,352,4373 0/0:127,0:127:99:0,349,4302 0/0:152,0:153:99:0,421,5210 0/0:63,0:63:99:0,187,2247 0/0:72,0:72:99:0,202,2448 0/0:62,0:62:99:0,159,1970 0/0:69,0:69:99:0,196,2349 0/0:56,0:56:99:0,159,1940 0/0:90,0:90:99:0,235,2898 0/0:95,0:95:99:0,256,3133 0/0:73,0:73:99:0,208,2541 0/0:75,0:75:99:0,205,2494 0/0:79,0:79:99:0,220,2662 0/0:102,1:103:99:0,277,3398 0/0:59,0:59:99:0,166,1992 0/0:59,0:59:99:0,169,2023 0/1:41,47:88:99:1321,0,1110 0/0:56,0:56:99:0,153,1871 0/1:38,31:69:99:878,0,1094 1 22055124 . A G 1334.35 . AC=1;AF=0.012;AN=84;BaseQRankSum=6.206;DP=5198;DS;Dels=0.00;FS=8.655;HRun=0;HaplotypeScore=2.1120;InbreedingCoeff=-0.0120;MQ=59.54;MQ0=0;MQRankSum=-1.077;QD=12.83;ReadPosRankSum=-1.165 GT:AD:DP:GQ:PL 0/0:94,0:94:99:0,256,2964 0/0:109,0:109:99:0,313,3631 0/0:114,0:114:99:0,304,3587 0/0:175,0:175:99:0,478,5712 0/0:181,0:181:99:0,521,6200 0/0:196,0:197:99:0,548,6726 0/0:176,0:176:99:0,490,5935 0/0:153,0:153:99:0,442,5231 0/0:110,0:110:99:0,310,3588 0/0:76,0:76:99:0,208,2403 0/0:85,0:85:99:0,241,2812 0/0:98,0:98:99:0,280,3269 0/0:77,0:77:99:0,202,2394 0/0:92,0:92:99:0,247,2918 0/0:250,0:250:99:0,713,8309 0/0:83,0:83:99:0,226,2659 0/0:104,0:104:99:0,286,3366 0/0:105,0:105:99:0,304,3581 0/0:139,0:139:99:0,373,4519 0/0:150,0:150:99:0,412,4856 0/0:141,0:141:99:0,397,4725 0/0:91,0:91:99:0,256,2999 0/0:192,0:192:99:0,560,6560 0/0:162,0:162:99:0,454,5457 0/0:172,0:173:99:0,463,5633 0/0:176,0:177:99:0,493,5863 0/0:96,0:96:99:0,259,3057 0/0:113,0:113:99:0,319,3746 0/0:84,0:85:99:0,238,2798 0/0:86,0:86:99:0,244,2860 0/0:85,0:85:99:0,235,2729 0/0:158,0:158:99:0,421,5043 0/0:99,0:99:99:0,277,3228 0/0:118,0:118:99:0,325,3880 0/0:108,0:108:99:0,292,3406 0/1:56,48:104:99:1381,0,1559 0/0:140,0:140:99:0,379,4526 0/0:91,0:91:99:0,241,2863 0/0:105,0:105:99:0,295,3474 0/0:100,1:102:99:0,286,3382 0/0:107,0:107:99:0,310,3570 0/0:96,0:96:99:0,262,3077 1 22149812 . C G 35.65 . AC=1;AF=0.015;AN=68;BaseQRankSum=2.901;DP=77;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.1578;InbreedingCoeff=-0.0005;MQ=57.59;MQ0=0;MQRankSum=1.100;QD=11.88;ReadPosRankSum=0.986 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6.01:0,6,66 0/0:2,0:2:6.01:0,6,58 0/0:1,0:1:3:0,3,28 0/0:2,0:2:3.01:0,3,39 0/0:2,0:2:3.01:0,3,45 0/1:0,3:3:0.97:85,6,0 0/0:2,0:2:6.02:0,6,70 ./. ./. 0/0:1,0:1:3.01:0,3,36 0/0:3,0:3:6:0,6,57 0/0:2,0:2:6.02:0,6,65 ./. 0/0:10,0:10:24.07:0,24,278 0/0:5,0:5:15.04:0,15,175 0/0:3,0:3:3.01:0,3,45 ./. ./. 0/0:5,0:5:12.03:0,12,138 0/0:2,0:2:6.02:0,6,70 0/0:2,0:2:3.01:0,3,45 0/0:2,0:2:6.02:0,6,75 0/0:2,0:2:3.01:0,3,39 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:3.01:0,3,34 0/0:1,0:1:3.01:0,3,30 0/0:2,0:2:6.02:0,6,69 0/0:1,0:1:3.01:0,3,35 0/0:4,0:4:9.01:0,9,96 0/0:1,1:2:3.01:0,3,36 0/0:1,0:1:3.01:0,3,31 0/0:1,0:1:3.01:0,3,30 ./. 0/0:2,0:2:6:0,6,57 ./. 0/0:1,0:1:3.01:0,3,36 0/0:1,0:1:3.01:0,3,32 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:3:0,3,28 ./. 1 22149935 . T C 9272.91 . AC=63;AF=0.788;AN=80;BaseQRankSum=-0.744;DP=335;Dels=0.00;FS=4.301;HRun=2;HaplotypeScore=0.3358;InbreedingCoeff=0.1476;MQ=57.97;MQ0=0;MQRankSum=0.553;QD=29.63;ReadPosRankSum=1.147 GT:AD:DP:GQ:PL 1/1:0,3:3:9.03:108,9,0 1/1:0,3:3:9.02:102,9,0 1/1:0,7:7:21.06:255,21,0 1/1:0,15:15:42.13:555,42,0 1/1:0,14:14:42.13:545,42,0 1/1:0,5:5:15.05:207,15,0 1/1:0,6:6:18.04:205,18,0 1/1:0,4:4:12.04:154,12,0 1/1:0,11:11:27.09:346,27,0 1/1:0,9:9:24.07:294,24,0 1/1:0,6:6:18.05:218,18,0 0/1:5,8:13:99:218,0,137 0/1:3,5:8:78.93:151,0,79 1/1:0,9:9:27.08:328,27,0 0/1:3,9:12:83.19:231,0,83 0/1:6,2:8:44.13:44,0,192 1/1:0,2:2:6.02:74,6,0 0/1:1,4:5:17.45:141,0,17 1/1:0,11:12:30.09:360,30,0 1/1:0,8:8:18.05:215,18,0 1/1:0,10:10:30.09:376,30,0 1/1:0,5:5:15.03:160,15,0 1/1:0,17:17:48.14:628,48,0 0/0:6,0:6:18.06:0,18,223 0/0:10,0:10:30.10:0,30,387 0/1:4,6:10:99:187,0,129 1/1:0,12:12:33.09:378,33,0 1/1:0,8:8:24.07:286,24,0 1/1:0,6:6:18.02:201,18,0 1/1:0,8:8:24.05:278,24,0 1/1:0,7:7:18.05:220,18,0 1/1:0,10:10:24.06:283,24,0 0/1:2,4:6:53.18:122,0,53 0/0:6,0:6:18.06:0,18,224 ./. 0/1:3,5:8:44.87:137,0,45 1/1:0,16:16:48.14:582,48,0 1/1:0,4:4:9.03:114,9,0 0/1:1,7:8:14.51:233,0,15 0/1:2,5:7:23.33:160,0,23 0/1:5,6:11:99:178,0,158 ./. 1 22155353 . G A 130.86 . AC=3;AF=0.038;AN=78;BaseQRankSum=-1.180;DP=161;Dels=0.00;FS=1.491;HRun=1;HaplotypeScore=0.1790;InbreedingCoeff=-0.1138;MQ=58.97;MQ0=0;MQRankSum=-1.054;QD=8.18;ReadPosRankSum=-1.843 GT:AD:DP:GQ:PL ./. 0/0:2,0:2:6.02:0,6,68 0/0:3,0:3:9.01:0,9,101 0/0:8,0:8:21.07:0,21,282 0/0:2,0:2:6.02:0,6,82 0/0:1,0:1:3.01:0,3,43 ./. 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:6.02:0,6,74 ./. 0/0:5,0:5:12.04:0,12,159 0/0:3,0:3:6.02:0,6,83 0/0:4,0:4:12.04:0,12,154 0/0:4,0:4:12.04:0,12,145 0/0:15,0:15:36.12:0,36,469 0/0:2,0:2:6.02:0,6,71 0/0:6,0:6:18.06:0,18,226 0/0:1,0:1:3.01:0,3,39 0/0:7,0:7:18.05:0,18,224 0/0:3,0:3:9.03:0,9,111 0/0:8,0:8:21.06:0,21,257 0/0:8,0:8:21.07:0,21,273 0/0:6,0:6:18.06:0,18,239 0/0:1,0:1:3.01:0,3,41 0/1:4,4:8:99:116,0,138 0/0:4,0:4:9.02:0,9,106 0/0:2,0:2:3.01:0,3,33 0/0:4,0:4:12.04:0,12,146 0/0:2,0:2:6.02:0,6,76 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.03:0,9,110 0/0:6,0:6:12.04:0,12,167 0/0:7,0:7:18.06:0,18,238 0/1:2,1:3:24.41:24,0,65 0/0:5,0:5:15.05:0,15,184 0/1:3,2:5:62.75:63,0,101 0/0:3,0:3:6.02:0,6,73 0/0:1,0:1:3.01:0,3,38 0/0:5,0:5:15.04:0,15,182 0/0:5,0:5:12.04:0,12,145 0/0:3,0:3:9.03:0,9,107 0/0:2,0:2:6.02:0,6,74 1 22158157 . A G 1999.64 . AC=6;AF=0.071;AN=84;BaseQRankSum=0.800;DP=785;Dels=0.00;FS=18.752;HRun=0;HaplotypeScore=0.5645;InbreedingCoeff=-0.0771;MQ=58.61;MQ0=0;MQRankSum=0.628;QD=12.98;ReadPosRankSum=1.523 GT:AD:DP:GQ:PL 0/0:12,0:12:36.11:0,36,429 0/0:22,0:22:66.19:0,66,774 0/0:10,0:10:30.09:0,30,356 0/1:14,17:31:99:494,0,409 0/1:18,18:36:99:547,0,504 0/1:10,17:27:99:477,0,288 0/0:15,0:15:45.14:0,45,542 0/1:11,7:18:99:197,0,310 0/0:14,0:14:42.10:0,42,483 0/0:13,0:13:36.09:0,36,423 0/0:13,0:13:36.09:0,36,413 0/0:14,0:14:39.11:0,39,454 0/0:12,0:12:33.10:0,33,392 0/0:16,0:16:48.14:0,48,567 0/0:42,0:42:99:0,123,1453 0/1:17,11:28:99:238,0,483 0/0:15,0:15:45.13:0,45,528 0/0:13,0:13:36.11:0,36,435 0/0:31,0:31:84.25:0,84,988 0/0:27,0:27:78.23:0,78,929 0/0:19,0:19:57.16:0,57,677 0/0:15,0:15:45.12:0,45,522 0/0:42,0:42:99:0,123,1466 0/0:11,0:11:30.09:0,30,374 0/0:14,0:14:39.11:0,39,467 0/0:14,0:14:39.11:0,39,457 0/0:8,0:8:24.07:0,24,288 0/0:14,0:14:42.13:0,42,511 0/0:14,0:14:33.10:0,33,389 0/0:16,1:17:48.12:0,48,548 0/0:11,0:11:33.09:0,33,379 0/0:29,0:29:87.25:0,87,1028 0/0:13,0:13:39.12:0,39,462 0/0:13,0:13:39.12:0,39,467 0/0:15,0:15:45.14:0,45,543 0/0:21,0:21:60.18:0,60,722 0/0:26,0:26:75.20:0,75,867 0/1:8,6:14:99:152,0,245 0/0:19,0:19:57.17:0,57,667 0/0:15,0:15:45.13:0,45,534 0/0:15,0:15:45.13:0,45,516 0/0:17,0:17:42.12:0,42,493 1 22163390 . G A 677.85 . AC=6;AF=0.071;AN=84;BaseQRankSum=-1.766;DP=336;Dels=0.00;FS=0.750;HRun=1;HaplotypeScore=0.2345;InbreedingCoeff=-0.0932;MQ=58.83;MQ0=0;MQRankSum=0.613;QD=14.12;ReadPosRankSum=0.810 GT:AD:DP:GQ:PL 0/0:8,0:8:24.08:0,24,303 0/0:9,0:9:24.06:0,24,274 0/0:10,0:10:27.09:0,27,350 0/1:3,7:10:90.67:190,0,91 0/1:2,9:11:34.84:275,0,35 0/1:4,1:5:27.97:28,0,113 0/0:3,0:3:9.03:0,9,115 0/1:3,2:5:64.27:64,0,97 0/0:11,0:11:33.07:0,33,399 0/0:3,0:3:9.03:0,9,114 0/0:4,0:4:9.03:0,9,121 0/0:4,0:4:9.03:0,9,118 0/0:3,0:3:9.03:0,9,109 0/0:6,0:6:18.06:0,18,223 0/0:20,0:20:48.14:0,48,607 0/1:7,5:12:99:139,0,213 0/0:4,0:4:12.04:0,12,149 0/0:6,0:6:18.05:0,18,219 0/0:13,0:13:36.11:0,36,436 0/0:13,0:13:30.09:0,30,379 0/0:14,0:14:36.11:0,36,451 0/0:8,0:8:21.06:0,21,256 0/0:13,0:13:36.11:0,36,475 0/0:4,0:4:12.04:0,12,163 0/0:17,0:17:39.12:0,39,508 0/0:7,0:7:15.05:0,15,203 0/0:6,0:6:15.04:0,15,176 0/0:10,0:10:27.09:0,27,343 0/0:6,0:6:18.06:0,18,232 0/0:7,0:7:18.06:0,18,228 0/0:4,0:4:12.04:0,12,152 0/0:21,0:21:51.14:0,51,630 0/0:8,0:8:21.07:0,21,266 0/0:6,0:6:15.05:0,15,192 0/0:5,0:5:15.05:0,15,190 0/0:4,0:4:12.04:0,12,146 0/0:6,0:6:18.05:0,18,219 0/1:2,3:5:56.29:87,0,56 0/0:8,0:8:24.06:0,24,277 0/0:5,0:5:15.05:0,15,187 0/0:4,0:4:9.03:0,9,103 0/0:8,0:8:21.07:0,21,271 1 22163402 . G A 339.04 . AC=4;AF=0.048;AN=84;BaseQRankSum=-0.761;DP=286;Dels=0.00;FS=1.016;HRun=0;HaplotypeScore=0.2433;InbreedingCoeff=-0.0737;MQ=58.62;MQ0=0;MQRankSum=-0.303;QD=9.16;ReadPosRankSum=-0.273 GT:AD:DP:GQ:PL 0/0:8,0:8:21.06:0,21,235 0/0:3,0:3:6.02:0,6,68 0/0:8,0:8:21.06:0,21,246 0/0:9,0:9:24.07:0,24,310 0/1:7,1:8:12.05:12,0,244 0/0:7,0:7:18.06:0,18,225 0/0:3,0:3:9.03:0,9,112 0/0:5,0:5:15.05:0,15,191 0/1:6,5:11:99:154,0,120 0/0:3,0:3:9.03:0,9,103 0/0:3,0:3:6.02:0,6,79 0/0:4,0:4:12.02:0,12,120 0/0:2,0:2:6.02:0,6,76 0/0:4,0:4:12.04:0,12,143 0/0:20,0:20:54.16:0,54,649 0/0:7,0:7:21.05:0,21,253 0/0:5,0:5:15.05:0,15,183 0/0:6,0:6:18.05:0,18,215 0/0:8,0:8:24.07:0,24,274 0/0:11,0:11:30.07:0,30,338 0/0:13,0:14:39.10:0,39,439 0/1:3,5:8:88.87:137,0,89 0/0:9,0:9:24.08:0,24,316 0/0:5,0:5:15.05:0,15,192 0/0:12,0:12:30.09:0,30,384 0/0:4,0:4:12.04:0,12,155 0/0:4,0:4:12.03:0,12,141 0/1:6,4:10:99:120,0,122 0/0:5,0:5:15.04:0,15,175 0/0:4,0:4:9.03:0,9,109 0/0:3,0:3:9.03:0,9,111 0/0:20,0:20:48.14:0,48,593 0/0:8,0:8:24.07:0,24,274 0/0:4,0:4:12.04:0,12,143 0/0:5,0:5:15.04:0,15,173 0/0:5,0:5:15.04:0,15,171 0/0:6,0:6:18.05:0,18,208 0/0:5,0:5:15.03:0,15,169 0/0:4,0:4:12.02:0,12,127 0/0:4,0:4:12.03:0,12,135 0/0:4,0:4:12.03:0,12,137 0/0:8,0:8:21.06:0,21,251 1 22169926 . G A 980.70 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.555;DP=802;Dels=0.00;FS=3.243;HRun=0;HaplotypeScore=0.5094;InbreedingCoeff=-0.0372;MQ=58.98;MQ0=0;MQRankSum=1.956;QD=12.90;ReadPosRankSum=0.095 GT:AD:DP:GQ:PL 0/0:13,0:13:27.08:0,27,349 0/0:16,0:16:45.13:0,45,542 0/0:13,0:13:33.10:0,33,408 0/0:30,1:31:57.61:0,58,976 0/0:44,0:44:99:0,111,1448 0/1:12,7:19:99:171,0,335 0/0:26,0:26:72.20:0,72,901 0/1:13,21:34:99:533,0,399 0/0:17,0:17:45.11:0,45,521 0/0:11,0:11:27.08:0,27,341 0/0:21,0:21:51.14:0,51,611 0/0:11,0:11:30.09:0,30,359 0/0:9,0:9:27.07:0,27,307 0/0:15,0:15:45.13:0,45,531 0/0:49,0:49:99:0,117,1407 0/1:11,12:23:99:352,0,312 0/0:15,0:15:39.11:0,39,476 0/0:17,0:17:48.14:0,48,575 0/0:31,0:31:87.21:0,87,1010 0/0:30,0:30:87.22:0,87,1005 0/0:19,0:19:54.14:0,54,626 0/0:21,0:21:60.18:0,60,714 0/0:27,0:27:78.24:0,78,985 0/0:18,0:18:48.15:0,48,616 0/0:22,0:22:60.19:0,60,787 0/0:13,0:13:36.11:0,36,451 0/0:17,0:17:48.13:0,48,561 0/0:15,0:15:45.14:0,45,541 0/0:10,0:10:30.08:0,30,352 0/0:12,0:12:36.10:0,36,414 0/0:10,0:10:30.07:0,30,331 0/0:26,0:26:69.17:0,69,811 0/0:18,0:18:51.16:0,51,624 0/0:10,0:10:27.08:0,27,309 0/0:13,0:13:36.10:0,36,418 0/0:16,0:16:48.13:0,48,544 0/0:24,0:24:57.17:0,57,689 0/0:11,0:11:33.10:0,33,393 0/0:17,0:17:51.14:0,51,577 0/0:17,0:17:45.12:0,45,526 0/0:10,0:10:30.07:0,30,345 0/0:11,0:11:33.10:0,33,391 1 22191454 . G A 8985.44 . AC=67;AF=0.798;AN=84;BaseQRankSum=-2.494;DP=365;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3459;InbreedingCoeff=-0.0086;MQ=58.59;MQ0=0;MQRankSum=-0.821;QD=25.45;ReadPosRankSum=0.904 GT:AD:DP:GQ:PL 0/1:6,3:9:67.58:68,0,132 1/1:0,8:8:21.06:247,21,0 1/1:0,9:9:21.07:262,21,0 1/1:0,19:20:57.16:650,57,0 0/1:15,11:26:99:320,0,456 0/1:7,11:18:99:296,0,173 1/1:0,16:17:45.11:507,45,0 0/1:5,10:16:99:263,0,156 1/1:0,7:7:21.06:247,21,0 1/1:0,3:3:9.03:106,9,0 1/1:0,2:2:3.01:45,3,0 1/1:0,5:6:12.04:146,12,0 1/1:0,5:5:15.05:183,15,0 1/1:0,9:9:27.07:313,27,0 1/1:0,20:20:54.15:620,54,0 1/1:0,7:7:18.05:216,18,0 0/0:4,0:4:9.03:0,9,106 1/1:0,5:5:15.04:173,15,0 1/1:0,9:9:21.07:262,21,0 1/1:0,14:14:42.13:496,42,0 0/1:1,7:8:6.61:179,0,7 1/1:0,4:4:9.03:116,9,0 1/1:0,19:19:57.17:659,57,0 1/1:0,8:9:24.07:278,24,0 0/1:1,7:8:12.91:217,0,13 1/1:0,7:7:21.06:246,21,0 0/1:3,2:5:48.94:49,0,92 0/0:8,0:8:18.05:0,18,224 1/1:0,1:1:3.01:34,3,0 1/1:0,6:6:15.03:162,15,0 1/1:0,6:6:18.05:207,18,0 1/1:0,7:7:18.05:223,18,0 0/1:6,3:9:52.04:52,0,167 1/1:0,5:5:15.03:164,15,0 0/1:2,3:5:60.55:84,0,61 1/1:0,3:3:6.02:79,6,0 0/1:3,7:10:61.68:214,0,62 0/1:6,3:9:75.06:75,0,156 1/1:0,6:6:18.05:202,18,0 0/1:1,1:2:23.61:28,0,24 1/1:0,7:7:18.05:206,18,0 0/1:3,3:7:78:91,0,78 1 22191549 . G A 18.23 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.205;DP=250;Dels=0.00;FS=8.652;HRun=0;HaplotypeScore=0.3516;InbreedingCoeff=-0.0449;MQ=58.90;MQ0=0;MQRankSum=0.883;QD=6.08;ReadPosRankSum=-0.045 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,175 0/0:8,0:8:21.06:0,21,257 0/0:8,0:8:24.07:0,24,279 0/0:6,0:6:18.05:0,18,224 0/0:9,0:9:21.05:0,21,260 0/0:9,0:9:21.06:0,21,258 0/1:1,2:3:27.95:64,0,28 0/0:3,0:3:9.02:0,9,105 0/0:9,0:9:24.07:0,24,293 0/0:4,0:4:9.03:0,9,122 0/0:1,0:1:3.01:0,3,32 0/0:3,0:3:9.02:0,9,101 0/0:4,0:4:9.02:0,9,109 0/0:7,0:7:21.06:0,21,256 0/0:17,0:18:45.11:0,45,519 0/0:6,0:6:18.06:0,18,220 0/0:4,0:4:12.02:0,12,135 0/0:6,0:6:15.04:0,15,174 0/0:7,0:7:18.05:0,18,214 0/0:11,0:11:30.06:0,30,357 0/0:9,0:9:21.07:0,21,270 0/0:6,0:6:15.04:0,15,175 0/0:6,0:6:15.05:0,15,192 0/0:8,0:8:18.06:0,18,230 0/0:4,0:4:12.04:0,12,153 0/0:7,0:7:18.06:0,18,241 0/0:3,0:3:9.03:0,9,115 0/0:2,0:2:6.02:0,6,77 0/0:4,0:4:9.03:0,9,113 0/0:4,0:4:9.03:0,9,113 0/0:7,0:7:18.02:0,18,195 0/0:4,0:4:9.03:0,9,111 0/0:9,0:9:18.04:0,18,205 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.02:0,9,98 0/0:4,0:4:6.02:0,6,83 0/0:8,0:8:24.07:0,24,298 0/0:5,0:5:12.04:0,12,153 0/0:10,0:10:30.06:0,30,318 0/0:3,0:3:9.03:0,9,105 0/0:8,0:8:24.06:0,24,266 0/0:4,0:4:12.03:0,12,133 1 22199245 . C T 9457.82 . 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G A 2157.68 . 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G A 4127.23 . 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C T 6669.40 . 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A G 34965.30 . 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G C 77750.30 . 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A G 1450.24 . 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G A 777.71 . 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T C 81119.38 . AC=83;AF=0.988;AN=84;BaseQRankSum=-4.702;DP=2991;Dels=0.00;FS=0.687;HRun=0;HaplotypeScore=1.6731;InbreedingCoeff=-0.0120;MQ=38.08;MQ0=185;MQRankSum=-5.279;QD=27.12;ReadPosRankSum=0.158 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1550,144,0 1/1:0,42:43:99:1159,108,0 1/1:0,49:49:99:1372,126,0 1/1:1,186:187:99:5226,442,0 1/1:0,101:101:99:2923,253,0 1/1:0,88:88:99:2479,214,0 1/1:0,89:89:99:2550,214,0 1/1:1,95:96:99:2749,210,0 1/1:0,51:51:99:1431,132,0 1/1:0,50:50:99:1463,132,0 1/1:0,58:58:99:1520,144,0 1/1:0,61:62:99:1637,153,0 1/1:0,47:47:99:1270,120,0 1/1:0,52:52:99:1416,126,0 1/1:0,177:177:99:4802,439,0 1/1:0,49:50:99:1279,123,0 1/1:0,58:58:99:1623,147,0 1/1:0,49:49:99:1325,123,0 1/1:0,103:103:99:2800,253,0 1/1:0,91:91:99:2540,229,0 1/1:0,72:73:99:1989,180,0 1/1:0,64:64:99:1715,159,0 1/1:0,161:161:99:4666,397,0 1/1:0,68:69:99:1893,165,0 1/1:0,72:72:99:1982,171,0 1/1:0,76:76:99:2199,192,0 1/1:0,33:33:87.20:937,87,0 1/1:0,46:46:99:1322,123,0 1/1:0,41:41:99:1183,108,0 1/1:0,53:54:99:1475,138,0 1/1:0,43:43:99:1151,108,0 1/1:0,93:93:99:2501,226,0 1/1:0,89:89:99:2329,210,0 1/1:0,49:49:99:1410,129,0 1/1:0,41:41:99:1141,105,0 1/1:0,66:66:99:1831,168,0 1/1:0,82:82:99:2137,198,0 1/1:0,58:58:99:1390,132,0 0/1:35,34:69:99:780,0,987 1/1:2,52:54:90.57:1413,91,0 1/1:0,51:51:99:1231,114,0 1/1:0,47:47:99:1328,126,0 1 22313103 . C G 430.46 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.108;DP=1790;Dels=0.00;FS=3.537;HRun=1;HaplotypeScore=1.2090;InbreedingCoeff=-0.0120;MQ=49.51;MQ0=0;MQRankSum=0.776;QD=12.66;ReadPosRankSum=-0.932 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,105,1309 0/0:39,0:39:99:0,111,1388 0/0:34,0:34:87.27:0,87,1104 0/0:96,0:96:99:0,280,3578 0/0:61,0:61:99:0,181,2331 0/0:65,0:65:99:0,190,2428 0/0:65,0:65:99:0,178,2344 0/0:58,0:58:99:0,172,2241 0/0:33,0:33:90.24:0,90,1113 0/0:28,0:28:75.21:0,75,918 0/0:29,0:30:81.21:0,81,978 0/0:23,0:23:66.21:0,66,836 0/0:28,0:28:78.24:0,78,980 0/0:30,0:30:84.24:0,84,1013 0/0:91,0:91:99:0,259,3119 0/0:27,0:27:72.22:0,72,877 0/0:39,0:39:99:0,111,1354 0/0:26,0:26:69.21:0,69,859 0/0:41,0:41:99:0,123,1462 0/0:54,0:54:99:0,144,1810 0/0:55,0:55:99:0,166,2058 0/0:29,0:29:81.25:0,81,1003 0/0:85,0:85:99:0,250,3264 0/0:60,0:60:99:0,172,2221 0/0:69,0:69:99:0,193,2460 0/0:54,0:54:99:0,153,1990 0/0:35,0:35:96.26:0,96,1180 0/0:26,0:26:66.20:0,66,816 0/0:23,0:23:63.19:0,63,783 0/0:35,0:35:96.29:0,96,1174 0/0:23,0:23:66.21:0,66,844 0/0:44,1:45:99:0,123,1561 0/0:38,0:38:99:0,108,1355 0/0:36,0:37:96.29:0,96,1206 0/0:28,0:28:78.24:0,78,976 0/1:16,18:34:99:477,0,460 0/0:44,0:44:99:0,129,1559 0/0:34,0:34:99:0,99,1222 0/0:30,0:30:90.28:0,90,1118 0/0:30,0:30:87.27:0,87,1067 0/0:43,0:43:99:0,126,1535 0/0:26,1:27:72.23:0,72,934 1 22313161 . T C 40300.13 . AC=83;AF=0.988;AN=84;BaseQRankSum=-2.524;DP=1427;Dels=0.00;FS=6.648;HRun=0;HaplotypeScore=0.7652;InbreedingCoeff=-0.0128;MQ=39.43;MQ0=76;MQRankSum=-3.171;QD=28.24;ReadPosRankSum=-0.609 GT:AD:DP:GQ:PL 1/1:0,25:25:60.16:686,60,0 1/1:0,20:20:57.14:629,57,0 1/1:1,25:26:26.20:657,26,0 1/1:0,87:87:99:2533,208,0 1/1:0,69:69:99:2066,171,0 1/1:0,51:51:99:1381,111,0 1/1:0,42:43:99:1269,105,0 1/1:0,45:45:99:1312,105,0 1/1:0,27:27:69.19:793,69,0 1/1:0,18:18:51.13:554,51,0 1/1:0,33:33:78.21:903,78,0 1/1:0,23:23:66.17:727,66,0 1/1:0,18:18:36.10:415,36,0 1/1:0,18:18:45.12:500,45,0 1/1:0,79:79:99:2211,193,0 1/1:0,23:23:57.15:650,57,0 1/1:0,23:23:60.16:685,60,0 1/1:2,29:31:30.42:741,30,0 1/1:0,33:33:87.21:947,87,0 1/1:0,52:52:99:1348,114,0 1/1:0,30:31:72.20:827,72,0 1/1:0,27:27:69.19:810,69,0 1/1:0,86:86:99:2622,214,0 1/1:0,40:40:99:1286,108,0 1/1:0,54:54:99:1649,138,0 1/1:1,38:39:42.67:957,43,0 1/1:0,20:20:60.12:646,60,0 1/1:0,19:19:45.12:514,45,0 1/1:0,5:5:12.03:131,12,0 1/1:0,17:17:45.11:495,45,0 1/1:0,18:18:48.12:516,48,0 1/1:0,51:52:99:1381,117,0 1/1:0,26:26:66.17:755,66,0 1/1:0,24:24:69.18:769,69,0 1/1:0,30:30:81.21:904,81,0 1/1:0,36:36:81.22:966,81,0 1/1:0,31:31:78.18:857,78,0 1/1:0,20:20:57.16:653,57,0 0/1:16,11:27:99:264,0,429 1/1:0,22:22:54.15:627,54,0 1/1:0,30:30:78.20:876,78,0 1/1:0,29:29:72.17:788,72,0 1 22332008 . T C 9305.60 . AC=41;AF=0.488;AN=84;BaseQRankSum=14.989;DP=2987;DS;Dels=0.00;FS=392.602;HRun=0;HaplotypeScore=2.7056;InbreedingCoeff=-0.9247;MQ=45.06;MQ0=219;MQRankSum=-19.199;QD=3.17;ReadPosRankSum=-1.266 GT:AD:DP:GQ:PL 0/1:41,13:54:99:104,0,1243 0/1:42,22:64:99:252,0,1218 0/1:54,11:65:5.85:6,0,1636 0/1:79,34:113:99:584,0,2399 0/1:56,31:88:99:493,0,1649 0/1:56,25:82:99:500,0,1693 0/1:42,22:64:99:395,0,1160 0/1:41,23:64:99:364,0,1090 0/1:51,16:67:99:204,0,1368 0/1:43,13:56:99:107,0,1222 0/1:42,9:51:26.05:26,0,1250 0/1:46,8:54:35.91:36,0,1366 0/1:33,12:45:99:130,0,1004 0/1:60,17:77:99:244,0,1654 0/1:144,41:185:99:495,0,4081 0/1:57,9:66:14.39:14,0,1637 0/1:50,15:65:99:140,0,1490 0/1:37,20:57:99:372,0,1084 0/1:79,20:99:99:132,0,2322 0/1:93,32:125:99:345,0,2681 0/1:73,32:105:99:320,0,2017 0/1:71,17:88:99:186,0,1999 0/1:59,29:88:99:422,0,1806 0/1:48,13:61:99:168,0,1516 0/1:43,23:66:99:314,0,1275 0/1:36,23:59:99:392,0,1043 0/1:35,14:49:99:176,0,846 0/1:44,22:66:99:286,0,1275 0/0:46,8:54:47.84:0,48,1423 0/1:34,21:55:99:268,0,932 0/1:43,15:58:99:154,0,1192 0/1:65,32:97:99:538,0,1879 0/1:54,19:73:99:250,0,1569 0/1:46,10:56:9.94:10,0,1461 0/1:56,18:74:63.93:64,0,1626 0/1:26,4:31:3.55:4,0,727 0/1:61,25:86:79.25:79,0,1749 0/1:42,20:62:99:390,0,1188 0/1:42,7:49:54.85:55,0,1189 0/1:37,19:56:57.02:57,0,1046 0/1:44,13:57:99:142,0,1202 0/1:45,11:56:86.82:87,0,1252 1 22336277 . C G 61227.82 . AC=82;AF=0.976;AN=84;BaseQRankSum=0.444;DP=1799;Dels=0.00;FS=0.691;HRun=1;HaplotypeScore=0.9761;InbreedingCoeff=-0.0244;MQ=51.86;MQ0=2;MQRankSum=0.726;QD=34.03;ReadPosRankSum=0.188 GT:AD:DP:GQ:PL 1/1:0,37:37:93.25:1118,93,0 1/1:1,35:36:71.85:1190,72,0 1/1:0,33:33:90.28:1117,90,0 1/1:1,93:95:99:3283,259,0 1/1:1,81:82:99:2972,235,0 1/1:0,68:68:99:2601,199,0 1/1:0,60:60:99:2276,175,0 1/1:0,75:75:99:2800,214,0 1/1:0,27:27:75.20:894,75,0 1/1:0,35:35:99:1233,99,0 1/1:0,33:33:90.28:1144,90,0 1/1:0,30:30:78.22:948,78,0 1/1:0,20:20:60.17:731,60,0 1/1:0,35:35:99:1249,105,0 1/1:0,102:103:99:3423,280,0 1/1:0,23:23:69.21:853,69,0 1/1:0,22:22:60.16:718,60,0 1/1:0,23:23:66.19:812,66,0 1/1:0,41:41:99:1373,111,0 1/1:0,55:55:99:1836,147,0 1/1:0,53:53:99:1680,135,0 1/1:0,39:39:99:1255,102,0 1/1:1,90:91:99:3415,265,0 1/1:0,50:50:99:1709,135,0 1/1:0,62:62:99:2322,181,0 1/1:0,58:58:99:2216,172,0 1/1:0,22:23:54.16:670,54,0 1/1:0,44:44:99:1423,117,0 1/1:0,29:29:81.25:1003,81,0 1/1:0,28:28:75.23:932,75,0 1/1:0,32:32:87.23:1047,87,0 0/1:19,29:48:99:875,0,515 1/1:0,44:44:99:1473,120,0 1/1:0,39:39:99:1248,102,0 1/1:0,24:24:69.21:859,69,0 1/1:0,19:19:51.14:624,51,0 1/1:0,28:28:81.23:989,81,0 1/1:0,28:28:78.23:948,78,0 0/1:11,21:32:99:691,0,277 1/1:0,38:38:99:1320,108,0 1/1:0,21:21:60.18:746,60,0 1/1:0,35:35:99:1213,102,0 1 22336305 . C T 13352.33 . AC=19;AF=0.226;AN=84;BaseQRankSum=-12.639;DP=2248;Dels=0.00;FS=1.686;HRun=0;HaplotypeScore=1.6012;InbreedingCoeff=-0.1557;MQ=48.02;MQ0=25;MQRankSum=4.317;QD=12.72;ReadPosRankSum=3.047 GT:AD:DP:GQ:PL 0/1:22,14:36:99:342,0,672 0/0:45,0:45:99:0,117,1436 0/0:41,0:41:99:0,102,1259 0/1:65,48:113:99:1287,0,1726 0/1:66,52:118:99:1412,0,2011 0/0:75,0:75:99:0,208,2598 0/1:40,30:70:99:803,0,1147 0/0:87,0:87:99:0,238,2975 0/0:34,0:34:96.27:0,96,1148 0/0:40,0:40:99:0,114,1388 0/0:42,0:42:99:0,117,1422 0/1:23,14:37:99:385,0,688 0/1:17,8:25:99:177,0,488 0/1:31,16:47:99:381,0,872 0/1:95,49:144:99:1157,0,2487 0/1:5,26:31:16.42:750,0,16 0/1:16,15:31:99:435,0,400 0/0:35,0:35:93.26:0,93,1138 0/0:69,0:69:99:0,181,2213 0/0:63,0:63:99:0,180,2192 0/0:63,0:63:99:0,172,2130 0/0:43,0:43:99:0,114,1393 0/0:99,0:99:99:0,268,3468 1/1:7,57:64:17.56:1733,18,0 0/1:12,62:74:86.77:1866,0,87 0/1:36,26:62:99:677,0,1024 0/1:20,16:36:99:408,0,469 0/0:48,0:48:99:0,102,1272 0/1:19,18:37:99:493,0,561 0/0:41,0:41:99:0,105,1261 0/0:41,0:41:99:0,108,1308 0/0:62,0:62:99:0,156,1902 0/1:31,17:48:99:403,0,958 0/0:52,0:52:99:0,147,1786 0/0:33,0:33:93.27:0,93,1134 0/0:23,0:23:57.15:0,57,691 0/1:20,19:40:99:507,0,512 0/1:30,7:37:99:137,0,886 0/0:35,0:35:99:0,99,1231 0/0:49,0:49:99:0,141,1740 0/0:31,0:31:84.25:0,84,1046 0/0:47,0:47:99:0,123,1500 1 22336308 . G A 13783.65 . AC=18;AF=0.214;AN=84;BaseQRankSum=8.598;DP=2335;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.3379;InbreedingCoeff=-0.2676;MQ=47.17;MQ0=25;MQRankSum=3.899;QD=12.43;ReadPosRankSum=2.697 GT:AD:DP:GQ:PL 0/1:22,12:34:99:324,0,621 0/0:47,0:47:99:0,120,1394 0/0:45,0:46:99:0,111,1261 0/1:70,47:117:99:1247,0,1799 0/1:69,56:125:99:1512,0,1944 0/0:76,0:76:99:0,201,2366 0/1:46,30:77:99:804,0,1292 0/0:86,0:86:99:0,226,2698 0/0:32,0:32:87.20:0,87,971 0/0:38,0:38:99:0,105,1218 0/0:42,0:42:99:0,114,1310 0/1:21,15:36:99:403,0,625 0/1:16,9:25:99:204,0,399 0/1:34,16:50:99:375,0,883 0/1:102,50:152:99:1197,0,2446 0/1:5,24:29:13.56:720,0,14 0/1:18,15:33:99:441,0,405 0/0:37,0:37:99:0,102,1155 0/0:69,0:69:99:0,180,2043 0/0:64,0:64:99:0,186,2136 0/0:64,0:64:99:0,171,1953 0/0:46,0:46:99:0,120,1384 0/0:103,0:103:99:0,271,3332 0/1:9,65:74:70.26:1893,0,70 0/1:13,68:81:99:1858,0,111 0/1:38,27:65:99:740,0,999 0/1:21,16:37:99:431,0,442 0/0:50,0:50:99:0,108,1293 0/1:22,18:40:99:505,0,583 0/0:42,0:43:99:0,114,1280 0/0:41,0:41:99:0,111,1231 0/0:59,0:59:99:0,147,1756 0/1:33,19:52:99:447,0,897 0/0:53,0:53:99:0,141,1636 0/0:34,0:34:90.24:0,90,1063 0/0:28,0:28:66.16:0,66,769 0/1:23,19:42:99:474,0,504 0/1:31,9:40:99:208,0,837 0/0:37,0:38:99:0,108,1202 0/0:49,0:49:99:0,144,1627 0/0:32,0:32:81.16:0,81,923 0/0:49,0:49:99:0,129,1460 1 22338947 . T A 126.51 . AC=12;AF=0.400;AN=30;BaseQRankSum=-0.858;DP=2489;Dels=0.00;FS=2.935;HRun=1;HaplotypeScore=1.1378;InbreedingCoeff=0.0954;MQ=4.72;MQ0=2396;MQRankSum=0.506;QD=0.27;ReadPosRankSum=-4.069 GT:AD:DP:GQ:PL ./. ./. 0/1:48,6:54:21.65:28,0,22 0/1:62,4:67:1.76:22,3,0 ./. ./. ./. ./. ./. ./. ./. 0/1:52,3:55:27.42:27,0,29 0/0:45,5:50:3.01:0,3,34 ./. 0/0:170,12:183:3.01:0,3,32 ./. ./. ./. 0/0:68,7:75:6:0,6,53 0/0:69,5:75:3:0,3,27 1/1:75,5:80:3:27,3,0 ./. ./. ./. ./. ./. ./. 1/1:51,5:56:3:27,3,0 0/1:48,4:53:20.67:21,0,21 ./. ./. ./. ./. 0/0:61,5:66:3:0,3,27 ./. ./. 0/0:59,6:65:3.01:0,3,33 0/0:58,4:62:6.01:0,6,60 ./. ./. 1/1:45,5:50:3:27,3,0 1/1:50,4:54:3:27,3,0 1 22338948 . AGC A 711.61 . AC=37;AF=0.685;AN=54;BaseQRankSum=0.281;DP=2641;FS=10.090;HRun=0;HaplotypeScore=12.4221;InbreedingCoeff=-0.1584;MQ=6.18;MQ0=2494;MQRankSum=-0.614;QD=0.40;ReadPosRankSum=-5.667 GT:AD:DP:GQ:PL ./.:.:2:.:0,0,0 1/1:65,0:2:3:27,3,0 0/1:52,7:9:48.55:49,0,50 0/1:68,0:1:1.75:10,3,0 ./. 1/1:80,0:1:3.01:34,3,0 ./. 1/1:65,0:2:3.01:34,3,0 1/1:65,0:1:3.01:30,3,0 1/1:49,0:1:3.01:31,3,0 ./.:.:2:.:0,0,0 0/1:59,0:2:15.77:16,0,55 0/1:54,0:2:19.93:20,0,55 ./. 0/1:202,0:4:48.41:73,0,48 ./. ./. 1/1:52,0:1:3.01:31,3,0 0/0:78,0:2:3.01:0,3,61 0/1:77,15:19:34.30:34,0,101 0/1:84,0:4:15:49,0,15 1/1:50,0:2:3.01:33,3,0 1/1:97,0:1:3:26,3,0 ./. ./. ./. 0/0:31,0:1:3.01:0,3,59 1/1:60,0:3:8.99:80,9,0 0/1:59,0:3:21.31:21,0,55 1/1:54,0:4:5.99:51,6,0 ./. 1/1:71,0:3:6:53,6,0 ./. 0/1:67,0:7:19.67:20,0,137 ./. ./. ./. 0/0:65,0:3:6.02:0,6,121 1/1:65,0:1:3.01:32,3,0 0/1:46,0:1:1.76:18,3,0 1/1:53,0:3:5.75:40,6,0 0/1:55,0:2:24.31:24,0,54 1 22338949 . G A 130.28 . AC=10;AF=0.385;AN=26;BaseQRankSum=-2.284;DP=2641;Dels=0.01;FS=3.139;HRun=1;HaplotypeScore=2.6474;InbreedingCoeff=-0.0380;MQ=6.18;MQ0=2494;MQRankSum=-1.349;QD=0.30;ReadPosRankSum=-3.841 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:64,4:68:3.01:33,3,0 ./. ./. ./. ./. ./. ./. ./. 0/1:52,7:59:27.42:27,0,33 0/1:47,7:54:20.67:21,0,32 ./. 0/0:177,25:202:3.01:0,3,33 ./. ./. ./. 0/0:69,7:78:3:0,3,27 0/0:73,4:77:3:0,3,27 0/1:77,7:84:20.66:21,0,33 ./. ./. ./. ./. ./. ./. 1/1:52,8:60:6:53,6,0 0/1:48,11:59:20.67:21,0,21 ./. ./. ./. ./. 0/0:61,6:67:6.01:0,6,58 ./. ./. ./. 0/0:58,7:65:6.01:0,6,59 ./. ./. 1/1:46,7:53:3:27,3,0 0/0:46,9:55:2.98:0,3,22 1 22338950 . C A 886.34 . AC=38;AF=0.760;AN=50;BaseQRankSum=-2.879;DP=3273;Dels=0.01;FS=7.097;HRun=2;HaplotypeScore=1.4491;InbreedingCoeff=-0.0188;MQ=7.42;MQ0=2988;MQRankSum=-0.505;QD=0.47;ReadPosRankSum=-3.619 GT:AD:DP:GQ:PL ./. 1/1:51,28:80:3.01:32,3,0 ./. 1/1:63,26:90:3.01:35,3,0 ./. 1/1:72,31:103:3.01:38,3,0 ./. 1/1:60,20:80:6.01:60,6,0 1/1:56,28:84:3:27,3,0 1/1:40,17:58:3:27,3,0 ./. 0/1:49,21:70:23.61:24,0,33 0/1:45,25:70:20.66:21,0,33 ./. 0/1:170,64:234:21.41:78,0,21 ./. ./. 1/1:42,23:65:6.01:60,6,0 0/0:65,31:97:3:0,3,27 0/0:68,29:99:2.99:0,3,23 1/1:71,32:104:9.02:98,9,0 1/1:45,15:60:3:27,3,0 1/1:87,34:121:3.01:31,3,0 ./. ./. ./. ./. 1/1:49,17:66:9.01:87,9,0 0/1:45,33:78:20.67:21,0,21 1/1:43,20:64:6.01:60,6,0 ./. 1/1:61,37:98:6.01:62,6,0 ./. 0/1:56,25:81:45.24:58,0,45 ./. ./. ./. 0/0:57,27:84:3.01:0,3,33 1/1:56,18:74:3.01:36,3,0 0/1:41,21:62:1.76:23,3,0 1/1:43,16:59:6.01:59,6,0 1/1:48,26:74:3:27,3,0 1 22835677 . A G 144239.32 . AC=63;AF=0.750;AN=84;BaseQRankSum=42.508;DP=5283;DS;Dels=0.00;FS=1.838;HRun=0;HaplotypeScore=2.0750;InbreedingCoeff=0.1746;MQ=59.52;MQ0=0;MQRankSum=1.173;QD=30.15;ReadPosRankSum=-0.156 GT:AD:DP:GQ:PL 0/0:93,1:94:99:0,227,3039 0/1:40,46:86:99:1396,0,1148 1/1:0,102:102:99:3799,301,0 1/1:0,242:242:99:9190,686,0 1/1:0,224:224:99:8910,656,0 1/1:1,197:198:99:7756,550,0 1/1:0,165:165:99:6209,463,0 1/1:0,205:205:99:7734,578,0 0/0:113,1:114:99:0,278,3622 0/1:41,39:80:99:1175,0,1176 0/1:50,44:94:99:1342,0,1421 0/1:55,61:116:99:1828,0,1480 0/1:33,46:79:99:1474,0,872 1/1:0,91:91:99:3300,259,0 1/1:1,234:236:99:8101,609,0 0/1:39,49:88:99:1517,0,1069 1/1:1,105:106:99:3635,259,0 1/1:1,90:91:99:3305,232,0 1/1:0,151:154:99:5264,415,0 1/1:0,140:141:99:5022,397,0 0/1:82,56:138:99:1597,0,2302 1/1:0,79:79:99:2793,220,0 1/1:0,247:248:99:9644,713,0 0/0:169,0:169:99:0,493,5934 0/1:106,88:195:99:2939,0,3148 0/1:83,87:170:99:2841,0,2282 1/1:0,67:67:99:2407,190,0 1/1:0,101:101:99:3508,280,0 1/1:0,75:75:99:2711,217,0 1/1:0,88:88:99:3099,247,0 1/1:0,91:91:99:3281,259,0 0/0:122,0:122:99:0,340,4097 0/1:43,47:90:99:1433,0,1189 0/1:53,56:109:99:1678,0,1435 0/1:44,45:89:99:1433,0,1237 0/1:55,45:100:99:1307,0,1581 1/1:0,161:163:99:5562,436,0 1/1:0,106:106:99:3880,307,0 1/1:0,88:88:99:3138,250,0 1/1:0,94:94:99:3361,265,0 1/1:4,85:89:99:2918,117,0 1/1:0,106:106:99:3752,298,0 1 22921729 . G A 574.40 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.269;DP=1156;Dels=0.00;FS=0.905;HRun=0;HaplotypeScore=0.9147;InbreedingCoeff=-0.0245;MQ=57.41;MQ0=0;MQRankSum=1.839;QD=11.05;ReadPosRankSum=-1.560 GT:AD:DP:GQ:PL 0/0:25,0:25:69.16:0,69,765 0/0:21,0:21:51.14:0,51,599 0/0:18,0:19:42.12:0,42,496 0/0:36,0:36:99:0,99,1215 0/0:34,0:34:96.28:0,96,1160 0/1:16,11:27:99:283,0,455 0/0:17,0:17:42.13:0,42,532 0/1:12,13:25:99:354,0,345 0/0:27,0:27:72.17:0,72,799 0/0:11,0:11:30.07:0,30,335 0/0:15,0:15:36.07:0,36,407 0/0:22,0:22:63.16:0,63,710 0/0:26,0:26:69.19:0,69,798 0/0:24,0:24:69.19:0,69,787 0/0:58,0:58:99:0,150,1691 0/0:27,0:27:72.20:0,72,828 0/0:43,0:43:99:0,111,1254 0/0:21,0:21:60.14:0,60,661 0/0:54,0:54:99:0,141,1646 0/0:34,0:34:99:0,102,1087 0/0:43,0:43:99:0,123,1361 0/0:25,0:25:72.18:0,72,794 0/0:45,0:45:99:0,117,1451 0/0:19,0:19:51.12:0,51,596 0/0:33,0:33:90.26:0,90,1074 0/0:22,0:22:60.18:0,60,732 0/0:20,0:21:54.15:0,54,630 0/0:20,0:20:57.13:0,57,609 0/0:17,0:17:45.12:0,45,509 0/0:23,0:23:69.16:0,69,755 0/0:29,0:29:78.21:0,78,895 0/0:47,0:47:99:0,114,1362 0/0:28,0:28:81.19:0,81,902 0/0:11,0:11:33.07:0,33,349 0/0:26,0:26:63.18:0,63,749 0/0:29,0:29:75.21:0,75,873 0/0:40,0:40:99:0,108,1257 0/0:34,0:34:90.24:0,90,1019 0/0:29,0:30:78.21:0,78,899 0/0:26,0:26:72.18:0,72,806 0/0:7,0:7:21.05:0,21,228 0/0:15,0:15:42.09:0,42,466 1 22923873 . G C 16169.82 . AC=14;AF=0.167;AN=84;BaseQRankSum=-2.438;DP=3679;DS;Dels=0.00;FS=5.047;HRun=0;HaplotypeScore=2.9553;InbreedingCoeff=-0.0286;MQ=59.22;MQ0=1;MQRankSum=0.025;QD=15.58;ReadPosRankSum=-1.463 GT:AD:DP:GQ:PL 0/1:25,31:56:99:904,0,670 0/1:28,16:44:99:396,0,782 0/0:40,0:40:99:0,105,1323 0/0:245,0:245:99:0,662,8553 0/0:249,0:249:99:0,677,8699 0/0:204,2:206:99:0,497,6998 0/0:175,0:175:99:0,466,6177 0/0:194,0:194:99:0,512,6674 0/0:35,0:35:99:0,102,1273 0/0:19,0:19:48.15:0,48,617 0/0:37,0:37:99:0,105,1286 0/0:38,0:38:96.23:0,96,1144 0/0:29,0:29:75.23:0,75,942 0/0:38,0:38:99:0,102,1286 0/0:191,0:192:99:0,472,5797 0/1:22,19:41:99:607,0,534 0/1:21,21:42:99:584,0,626 0/1:27,8:35:99:199,0,868 1/1:1,91:92:99:2846,229,0 0/1:55,60:115:99:1667,0,1450 0/1:50,37:87:99:1013,0,1298 0/1:25,24:50:99:683,0,673 0/0:248,0:248:99:0,659,8616 0/0:198,1:200:99:0,506,6794 0/1:101,109:210:99:3372,0,2774 0/1:82,84:166:99:2436,0,2460 0/0:34,0:34:96.29:0,96,1181 0/0:31,0:31:81.24:0,81,992 0/0:50,0:50:99:0,132,1600 0/1:13,21:34:99:602,0,341 0/0:35,1:36:96.26:0,96,1197 0/0:102,0:102:99:0,253,3186 0/1:36,30:66:99:861,0,937 0/0:38,0:38:99:0,114,1397 0/0:42,0:42:99:0,111,1362 0/0:49,0:49:99:0,132,1675 0/0:98,0:98:99:0,241,2938 0/0:44,0:44:99:0,114,1387 0/0:38,0:38:99:0,102,1254 0/0:51,0:51:99:0,132,1633 0/0:41,0:41:99:0,105,1335 0/0:42,0:42:99:0,111,1427 1 22927408 . G A 2686.83 . AC=6;AF=0.071;AN=84;BaseQRankSum=-8.027;DP=1737;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.6586;InbreedingCoeff=-0.0769;MQ=58.68;MQ0=0;MQRankSum=2.553;QD=12.73;ReadPosRankSum=-0.448 GT:AD:DP:GQ:PL 0/0:28,0:28:78.25:0,78,983 0/0:26,0:26:78.22:0,78,954 0/0:19,0:19:54.17:0,54,682 0/0:87,0:87:99:0,250,3226 0/0:76,0:76:99:0,229,2963 0/0:73,0:73:99:0,208,2778 0/0:60,0:60:99:0,172,2287 0/0:52,0:52:99:0,150,1962 0/0:26,0:26:75.22:0,75,932 0/0:20,0:20:60.18:0,60,737 0/0:38,0:38:99:0,108,1344 0/1:14,17:31:99:485,0,335 0/0:28,0:28:84.25:0,84,1026 0/1:17,14:31:99:418,0,548 0/1:44,39:83:99:1024,0,1228 0/0:52,0:52:99:0,150,1843 0/1:12,9:21:99:272,0,352 0/0:22,1:23:30.08:0,30,759 0/0:57,0:58:99:0,156,1958 0/0:66,0:66:99:0,190,2380 0/0:51,0:51:99:0,132,1649 0/0:41,0:41:99:0,117,1471 0/0:101,0:101:99:0,289,3802 0/0:42,0:42:99:0,117,1538 0/0:43,0:43:99:0,111,1466 0/0:45,0:45:99:0,123,1636 0/0:25,0:25:72.20:0,72,863 0/0:31,0:31:93.27:0,93,1130 0/0:20,0:20:54.17:0,54,675 0/0:27,0:27:81.22:0,81,979 0/0:34,0:34:99:0,102,1266 0/0:62,0:62:99:0,177,2163 0/0:47,0:47:99:0,132,1630 0/1:13,8:21:99:219,0,402 0/1:10,14:24:99:374,0,264 0/0:15,0:15:45.12:0,45,551 0/0:60,0:61:99:0,172,2123 0/0:25,0:25:75.23:0,75,920 0/0:31,0:31:84.25:0,84,1038 0/0:30,0:30:87.26:0,87,1080 0/0:22,0:22:63.20:0,63,791 0/0:41,0:41:99:0,120,1504 1 23219398 . A AACCCCC 3831.44 . AC=37;AF=0.440;AN=84;BaseQRankSum=10.803;DP=2036;FS=2071.813;HRun=0;HaplotypeScore=323.5482;InbreedingCoeff=-0.7714;MQ=61.02;MQ0=0;MQRankSum=20.294;QD=2.13;ReadPosRankSum=-31.246 GT:AD:DP:GQ:PL 0/1:19,0:27:36.91:37,0,919 0/1:34,0:46:99:158,0,1665 0/1:19,1:29:57.41:57,0,913 0/1:76,1:116:99:260,0,4075 0/1:51,1:78:85.73:86,0,2368 0/1:52,2:81:86.06:86,0,2815 0/1:31,0:48:66.47:66,0,1846 0/1:34,0:51:10.06:10,0,2093 0/1:28,0:39:87.67:88,0,1604 0/1:27,0:38:53.48:53,0,1453 0/1:27,0:36:19.75:20,0,1614 0/1:29,0:39:99:102,0,1412 0/1:22,1:30:70.83:71,0,1253 0/1:21,0:30:48.67:49,0,988 0/1:69,3:110:99:418,0,3126 0/1:35,0:45:19.58:20,0,1807 0/1:26,1:41:99:132,0,1213 0/1:20,0:27:68.69:69,0,1253 0/1:53,1:70:99:211,0,2407 0/1:47,0:68:56.55:57,0,2378 0/1:33,0:48:99:314,0,1736 0/1:27,1:42:68.90:69,0,1540 0/1:70,2:112:99:223,0,3862 0/1:31,1:55:99:132,0,1693 0/1:35,0:57:99:158,0,1948 0/0:39,1:52:5.69:0,6,1738 0/1:20,0:29:56.21:56,0,1175 0/0:31,0:39:4.13:0,4,1738 0/1:24,0:34:87.72:88,0,1500 0/1:20,0:29:99:104,0,922 0/1:29,1:34:26.43:26,0,1553 0/0:51,1:67:43.08:0,43,2977 0/1:34,0:42:1.78:0,3,2129 0/1:21,0:33:52.87:53,0,934 0/0:23,0:31:19.24:0,19,1197 0/1:25,0:31:54.52:55,0,1527 0/1:40,2:56:99:386,0,1929 0/1:18,0:25:20.24:20,0,842 0/1:37,1:53:79.18:79,0,1802 0/1:26,0:33:7.86:8,0,1243 0/0:35,0:43:11.32:0,11,1646 0/1:25,1:37:11.71:12,0,1282 1 23219493 . T C 80588.96 . AC=82;AF=0.976;AN=84;BaseQRankSum=3.965;DP=2581;Dels=0.00;FS=3.504;HRun=0;HaplotypeScore=1.8526;InbreedingCoeff=-0.0244;MQ=58.86;MQ0=0;MQRankSum=-0.239;QD=31.22;ReadPosRankSum=-1.411 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1506,123,0 1/1:0,48:49:99:1562,129,0 1/1:0,32:33:84.26:1040,84,0 1/1:0,126:126:99:4181,325,0 1/1:0,138:138:99:4567,349,0 1/1:0,89:90:99:2866,220,0 1/1:0,63:63:99:2146,169,0 1/1:1,96:99:99:3178,244,0 1/1:0,65:67:99:2056,165,0 1/1:0,53:54:99:1649,135,0 1/1:0,46:46:99:1370,111,0 1/1:0,61:62:99:1956,162,0 1/1:0,37:37:99:1194,99,0 1/1:0,44:44:99:1516,126,0 1/1:1,137:140:99:4185,340,0 1/1:0,67:67:99:2281,187,0 1/1:0,32:32:93.26:1124,93,0 1/1:0,47:48:99:1585,132,0 1/1:0,68:68:99:2018,162,0 1/1:0,67:67:99:2164,174,0 1/1:1,65:67:99:2027,162,0 1/1:0,45:45:99:1463,120,0 1/1:0,133:135:99:4229,325,0 1/1:0,61:61:99:2168,169,0 1/1:0,76:77:99:2404,187,0 1/1:0,82:83:99:2560,202,0 1/1:0,38:38:99:1326,108,0 1/1:0,40:40:99:1378,111,0 1/1:0,39:39:99:1308,108,0 1/1:0,48:49:99:1613,132,0 1/1:0,43:43:99:1306,108,0 1/1:0,48:48:99:1601,129,0 1/1:0,52:53:99:1590,126,0 0/1:24,27:54:99:715,0,556 0/1:26,22:50:99:631,0,669 1/1:0,46:47:99:1417,114,0 1/1:0,46:46:99:1383,111,0 1/1:0,43:43:99:1345,114,0 1/1:0,56:57:99:1897,153,0 1/1:0,29:29:78.20:929,78,0 1/1:0,51:51:99:1655,138,0 1/1:0,47:47:99:1501,123,0 1 23405589 . A C 584.49 . AC=8;AF=0.095;AN=84;BaseQRankSum=-36.761;DP=5146;DS;Dels=0.00;FS=1769.443;HRun=2;HaplotypeScore=2.5353;InbreedingCoeff=-0.1062;MQ=58.89;MQ0=1;MQRankSum=-0.484;QD=0.54;ReadPosRankSum=-27.950 GT:AD:DP:GQ:PL 0/1:68,38:106:56.90:57,0,2181 0/0:74,20:95:99:0,127,2315 0/0:76,34:110:17.32:0,17,2276 0/0:117,81:198:23.34:0,23,3537 0/0:93,70:163:99:0,164,3039 0/0:97,73:172:58.17:0,58,2970 0/0:103,57:160:99:0,180,3214 0/0:102,60:162:99:0,211,3267 0/0:75,50:125:33.94:0,34,2129 0/0:68,27:95:99:0,105,2179 0/0:59,34:93:68.74:0,69,1858 0/1:71,31:102:26.85:27,0,2117 0/0:52,28:80:38.86:0,39,1542 0/0:67,22:89:64.28:0,64,2121 0/1:134,114:250:99:303,0,3716 0/0:57,23:80:82.53:0,83,1781 0/0:83,36:119:99:0,111,2457 0/1:51,40:91:55.75:56,0,1542 0/1:87,53:140:98.09:98,0,2584 0/0:113,55:169:99:0,122,3186 0/1:97,57:154:99:128,0,2750 0/0:61,39:100:66.36:0,66,1864 0/0:138,81:220:99:0,176,4536 0/0:93,52:146:99:0,116,2986 0/0:91,46:137:99:0,241,3110 0/0:85,47:132:99:0,120,2418 0/0:54,19:74:36.26:0,36,1703 0/0:60,32:92:44.80:0,45,1810 0/0:59,27:86:37.76:0,38,1881 0/0:53,28:81:99:0,121,1723 0/0:64,36:101:19.17:0,19,2031 0/0:104,54:158:99:0,234,3275 0/0:77,44:122:16.74:0,17,2146 0/0:75,29:104:99:0,106,2357 0/0:74,32:107:19.45:0,19,2174 0/1:61,32:93:26.91:27,0,1935 0/1:85,53:138:8.07:8,0,2538 0/0:71,19:90:99:0,160,2305 0/0:65,30:95:99:0,143,2074 0/0:69,32:102:28.09:0,28,2110 0/0:82,35:117:8.12:0,8,2321 0/0:69,28:97:99:0,106,2225 1 23694471 . A C 20.91 . 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G C 7.27 . 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G C 16.18 . 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A C 21.85 . 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T C 53720.14 . 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A G 21424.90 . 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TGCGGAGATGTC T 2355.19 . 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G T 831.13 . 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T G 394.11 . 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G A 8778.42 . 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G A 25277.14 . 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C T 5951.57 . 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C T 43459.91 . 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T C 21036.74 . 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T C 16171.54 . 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C G 319.13 . AC=13;AF=0.203;AN=64;BaseQRankSum=-8.777;DP=854;Dels=0.00;FS=383.736;HRun=3;HaplotypeScore=0.8347;InbreedingCoeff=-0.2758;MQ=31.09;MQ0=181;MQRankSum=1.378;QD=0.91;ReadPosRankSum=-9.072 GT:AD:DP:GQ:PL 0/1:12,6:18:22.85:23,0,324 0/0:21,2:23:45.07:0,45,486 ./. 0/1:51,15:67:49.82:50,0,1188 0/0:43,14:57:66.68:0,67,988 0/1:31,15:46:13.27:13,0,727 0/0:37,8:45:47.57:0,48,807 0/0:17,4:21:42.05:0,42,411 0/1:26,10:36:7.66:8,0,522 0/1:13,2:15:3.55:4,0,219 0/0:12,0:12:18.02:0,18,166 ./. 0/0:13,3:16:13.38:0,13,356 0/1:8,3:11:11.57:12,0,174 0/1:27,9:36:63.03:63,0,492 0/0:1,1:2:3:0,3,28 0/0:13,2:15:24.04:0,24,251 0/1:10,4:14:36.24:36,0,154 0/0:24,2:26:7.42:0,7,310 0/0:20,6:26:39.08:0,39,420 0/0:25,1:26:63.10:0,63,683 0/1:20,11:31:53.90:54,0,341 0/0:42,19:62:26.32:0,26,881 ./. ./. ./. 0/0:10,2:12:24.06:0,24,274 0/1:14,5:19:34.94:35,0,203 0/1:17,9:26:47.49:47,0,355 ./. 0/0:16,2:18:39.07:0,39,418 0/0:43,6:49:33.53:0,34,1001 ./. ./. 0/1:10,5:15:38.25:38,0,102 ./. ./. 0/0:10,3:13:21.03:0,21,212 0/0:13,4:17:1.96:2,0,280 0/0:9,4:13:6.02:0,6,74 0/1:12,5:17:59.71:60,0,177 0/0:20,5:25:21.39:0,21,432 1 25629927 . G A 74.64 . AC=2;AF=0.030;AN=66;BaseQRankSum=0.398;DP=605;Dels=0.00;FS=24.010;HRun=0;HaplotypeScore=0.9759;InbreedingCoeff=0.4692;MQ=37.29;MQ0=7;MQRankSum=2.734;QD=3.39;ReadPosRankSum=0.961 GT:AD:DP:GQ:PL 0/0:12,0:12:33.06:0,33,341 0/0:19,0:19:51.08:0,51,530 0/0:2,0:2:6.01:0,6,60 0/0:47,0:47:99:0,123,1335 0/0:43,0:43:99:0,99,1045 0/0:33,0:33:81.16:0,81,867 0/0:33,0:33:81.17:0,81,887 0/0:16,0:16:42.05:0,42,407 0/0:24,0:24:66.13:0,66,687 0/0:9,0:9:27.05:0,27,278 0/0:9,0:9:27.04:0,27,260 ./. 0/0:13,0:13:36.03:0,36,349 0/0:7,0:7:15.02:0,15,162 0/0:23,0:24:54.09:0,54,550 0/0:1,0:1:3:0,3,28 0/0:12,1:13:30.06:0,30,317 0/0:6,0:7:12.03:0,12,132 0/0:17,0:17:39.06:0,39,393 0/0:20,0:20:39.08:0,39,407 0/0:23,0:24:66.11:0,66,702 0/0:21,0:22:48.06:0,48,483 0/0:44,0:46:99:0,99,1050 ./. ./. ./. 0/0:14,0:14:39.07:0,39,405 0/0:11,0:11:24.03:0,24,224 0/0:17,0:18:36.04:0,36,364 ./. 0/0:16,0:16:45.08:0,45,457 0/0:40,0:41:99:0,108,1144 ./. ./. 0/0:8,0:8:15.02:0,15,148 ./. ./. 0/0:10,0:10:24.04:0,24,240 0/0:12,0:13:33.08:0,33,357 0/1:0,6:6:0.51:112,9,0 0/0:10,0:10:18.04:0,18,197 0/1:13,3:16:31.33:31,0,316 1 25629943 . A C 406.46 . AC=15;AF=0.227;AN=66;BaseQRankSum=-10.521;DP=857;Dels=0.00;FS=102.416;HRun=2;HaplotypeScore=0.7280;InbreedingCoeff=-0.2324;MQ=40.16;MQ0=49;MQRankSum=-8.283;QD=0.99;ReadPosRankSum=-2.127 GT:AD:DP:GQ:PL 0/0:6,10:17:18.05:0,18,211 0/0:8,9:17:24.07:0,24,280 0/0:2,1:3:6.02:0,6,69 0/1:28,43:71:40.40:40,0,632 0/0:13,55:69:2.42:1,0,345 0/1:20,30:50:71.27:71,0,516 0/0:17,25:42:3.77:0,4,497 0/1:5,6:11:10.60:11,0,153 0/1:21,21:42:99:112,0,586 0/1:9,8:17:4.48:4,0,238 0/0:6,7:13:15.05:0,15,177 ./. 0/0:8,8:16:24.05:0,24,256 0/1:6,11:17:42.53:43,0,185 0/1:21,23:44:52.03:52,0,590 ./. 0/1:11,11:22:8.50:9,0,261 0/0:5,4:9:9.03:0,9,105 0/0:8,14:22:24.05:0,24,264 0/0:15,6:22:42.07:0,42,476 0/1:15,21:36:46.94:47,0,427 0/1:11,15:26:22.98:23,0,328 0/0:21,45:66:4.81:0,5,529 ./. ./. ./. 0/0:9,9:18:27.07:0,27,305 0/1:6,5:11:12.38:12,0,179 0/1:12,16:28:52.62:53,0,295 ./. 0/0:10,4:14:27.08:0,27,306 0/0:29,14:43:54.60:0,55,889 ./. 0/1:0,2:2:1.76:31,3,0 0/0:6,6:12:15.05:0,15,180 ./. ./. 0/1:5,11:16:21.96:22,0,143 0/0:8,13:21:24.07:0,24,276 0/0:7,4:11:12.03:0,12,137 0/1:7,11:18:8.44:8,0,206 0/0:15,14:29:8.51:0,9,374 1 25780806 . G C 108.25 . AC=7;AF=0.083;AN=84;BaseQRankSum=-20.639;DP=3226;Dels=0.00;FS=474.721;HRun=1;HaplotypeScore=1.3462;InbreedingCoeff=-0.1093;MQ=58.37;MQ0=0;MQRankSum=2.060;QD=0.20;ReadPosRankSum=-8.749 GT:AD:DP:GQ:PL 0/1:38,21:59:8.51:9,0,1066 0/0:43,20:63:27.07:0,27,1087 0/1:33,26:59:19.41:19,0,862 0/0:103,35:138:99:0,124,2639 0/0:84,40:124:62.32:0,62,2174 0/0:80,31:111:99:0,107,2021 0/0:92,32:124:99:0,145,2318 0/0:83,24:107:99:0,129,2061 0/0:44,12:56:92.54:0,93,1280 0/0:40,23:63:40.99:0,41,1055 0/1:26,21:47:48.18:48,0,647 0/0:37,16:53:36.86:0,37,924 0/0:59,18:78:51.47:0,51,1486 0/0:32,10:42:8.66:0,9,821 0/1:122,102:224:36.19:36,0,3265 0/1:27,17:44:12.79:13,0,628 0/0:41,16:58:72.55:0,73,1116 0/0:37,12:49:58.51:0,59,921 0/0:51,19:70:62.48:0,62,1293 0/0:66,19:85:99:0,138,1645 0/0:58,29:87:75.07:0,75,1454 0/0:38,10:49:90.22:0,90,1080 0/0:101,55:156:99:0,139,2446 0/0:89,38:127:99:0,137,2372 0/0:98,33:131:99:0,163,2430 0/0:84,32:116:99:0,171,2374 0/0:29,15:44:13.89:0,14,728 0/0:36,15:51:33.26:0,33,931 0/0:31,16:47:1.93:3,0,840 0/0:40,13:53:93.21:0,93,1097 0/1:27,18:45:10.79:11,0,658 0/0:81,15:96:99:0,159,1847 0/0:48,12:60:71.72:0,72,1120 0/0:35,11:46:54.75:0,55,1004 0/0:37,13:50:81.17:0,81,943 0/0:63,17:80:99:0,113,1622 0/0:35,31:66:1.35:4,0,1023 0/1:34,25:59:76.95:77,0,717 0/0:36,7:43:51.62:0,52,928 0/0:41,18:59:64.65:0,65,1102 0/0:40,17:57:65.62:0,66,1092 0/0:34,16:50:29.83:0,30,843 1 25889632 . T C 29452.36 . AC=42;AF=0.500;AN=84;BaseQRankSum=15.893;DP=1785;Dels=0.00;FS=3.057;HRun=5;HaplotypeScore=1.2214;InbreedingCoeff=-0.0476;MQ=59.05;MQ0=0;MQRankSum=-0.319;QD=22.21;ReadPosRankSum=0.355 GT:AD:DP:GQ:PL 1/1:0,23:23:60.14:710,60,0 1/1:0,32:32:84.26:1057,84,0 1/1:0,23:23:60.15:732,60,0 1/1:0,108:108:99:3762,289,0 1/1:2,109:111:99:3860,268,0 0/0:88,0:88:99:0,217,2728 0/1:41,45:86:99:1293,0,1213 0/1:40,39:79:99:1153,0,1179 0/0:21,0:21:63.18:0,63,740 0/0:27,0:27:81.21:0,81,940 0/1:16,9:25:99:230,0,478 0/1:17,15:32:99:460,0,404 1/1:0,20:20:60.13:677,60,0 0/0:31,0:31:87.27:0,87,1063 0/0:87,0:87:99:0,241,2876 0/1:9,15:24:99:386,0,251 0/0:28,0:28:78.24:0,78,957 0/0:24,0:24:69.20:0,69,828 0/1:19,20:39:99:554,0,559 0/1:19,29:48:99:853,0,497 1/1:0,41:41:99:1334,111,0 0/1:16,11:27:99:271,0,472 1/1:0,112:112:99:3841,295,0 0/0:77,0:77:99:0,217,2677 0/1:46,37:83:99:1093,0,1237 0/1:29,30:59:99:920,0,800 1/1:0,15:15:45.13:542,45,0 0/1:15,12:27:99:293,0,447 0/1:10,11:21:99:306,0,238 0/1:16,10:26:99:307,0,441 0/1:13,6:19:99:171,0,416 1/1:0,48:48:99:1540,120,0 0/1:19,14:33:99:393,0,564 0/1:12,10:22:99:300,0,321 0/1:12,11:23:99:326,0,304 0/1:7,9:16:99:269,0,201 0/0:40,0:40:99:0,99,1205 0/0:36,0:36:99:0,108,1286 0/1:10,13:23:99:368,0,291 0/1:12,18:30:99:452,0,285 0/1:11,19:30:99:568,0,251 0/1:6,15:21:99:430,0,160 1 26090439 . G T 809.02 . 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C T 738.21 . 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T C 59676.56 . 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C A 6584.82 . 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G A 815.51 . 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C T 721.97 . 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G A 8573.28 . 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G A 32830.32 . 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TAGCATGGAA T 1517.51 . 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G C 16.29 . AC=5;AF=0.060;AN=84;BaseQRankSum=-7.012;DP=511;Dels=0.00;FS=78.777;HRun=1;HaplotypeScore=0.2368;InbreedingCoeff=-0.1232;MQ=57.67;MQ0=0;MQRankSum=0.576;QD=0.33;ReadPosRankSum=-1.441 GT:AD:DP:GQ:PL 0/1:6,3:9:22.75:23,0,130 0/0:8,5:13:21.03:0,21,243 0/0:9,3:12:24.06:0,24,289 0/0:10,6:16:30.10:0,30,405 0/1:9,7:16:30.92:31,0,342 0/0:18,5:23:48.12:0,48,623 0/0:7,3:10:21.05:0,21,268 0/0:13,5:19:36.12:0,36,482 0/0:7,1:8:21.05:0,21,254 0/0:3,3:6:6.02:0,6,78 0/0:6,5:11:0.85:7,0,172 0/0:8,3:11:24.05:0,24,289 0/0:5,4:9:15.04:0,15,178 0/0:7,4:11:15.05:0,15,185 0/0:24,13:37:2.15:0,2,690 0/0:11,6:17:30.10:0,30,377 0/0:8,2:10:1.57:4,0,238 0/0:5,4:9:12.02:0,12,138 0/0:5,5:10:15.05:0,15,185 0/0:13,4:17:27.08:0,27,340 0/0:6,1:8:12.04:0,12,149 0/0:8,3:11:9.03:0,9,112 0/0:19,9:28:54.17:0,54,735 0/0:8,2:10:18.06:0,18,237 0/0:6,2:8:18.04:0,18,217 0/0:8,8:16:24.08:0,24,317 0/0:4,1:5:12.04:0,12,146 0/0:8,7:15:18.06:0,18,221 0/0:6,3:9:18.06:0,18,230 0/0:4,6:10:9.03:0,9,115 0/1:6,5:11:8.63:9,0,167 0/0:10,6:16:21.07:0,21,267 0/0:5,5:10:9.03:0,9,122 0/0:2,2:4:6.01:0,6,67 0/0:9,3:12:0.40:0,0,263 0/0:5,4:9:9.03:0,9,116 0/1:5,3:8:16.30:16,0,168 0/0:7,2:9:21.04:0,21,233 0/0:7,3:10:18.05:0,18,222 0/0:7,3:10:18.06:0,18,230 0/1:2,4:6:23.47:23,0,67 0/0:9,3:12:1.33:4,0,272 1 26608814 . A G 61595.83 . AC=81;AF=0.964;AN=84;BaseQRankSum=-4.158;DP=2136;Dels=0.00;FS=14.683;HRun=2;HaplotypeScore=11.3548;InbreedingCoeff=-0.0371;MQ=50.94;MQ0=4;MQRankSum=-1.600;QD=28.84;ReadPosRankSum=-1.061 GT:AD:DP:GQ:PL 1/1:0,28:28:69.16:748,69,0 1/1:0,23:23:63.15:668,63,0 0/1:3,9:12:81.05:226,0,81 1/1:1,108:109:99:3516,310,0 0/1:18,34:53:99:911,0,509 1/1:0,61:61:99:1830,159,0 1/1:0,38:38:99:1211,111,0 1/1:0,42:42:99:1329,120,0 1/1:0,17:17:39.09:432,39,0 0/1:13,4:17:75.15:75,0,354 1/1:0,20:20:57.07:586,57,0 1/1:0,19:19:51.08:539,51,0 1/1:1,12:13:30.08:340,30,0 1/1:0,29:29:84.15:875,84,0 1/1:0,181:181:99:4989,457,0 1/1:0,42:43:99:1099,105,0 1/1:0,26:26:69.15:752,69,0 1/1:0,27:27:72.20:833,72,0 1/1:1,130:132:99:3577,312,0 1/1:2,223:225:99:6751,616,0 1/1:0,113:113:99:3115,289,0 1/1:0,59:59:99:1794,171,0 1/1:0,93:93:99:2939,259,0 1/1:0,52:52:99:1698,147,0 1/1:0,40:40:99:1237,111,0 1/1:0,43:43:99:1342,120,0 1/1:0,26:26:72.11:790,72,0 1/1:0,27:27:75.19:831,75,0 1/1:0,21:21:60.15:659,60,0 1/1:0,15:15:36.10:427,36,0 1/1:0,26:26:75.16:781,75,0 1/1:0,190:191:99:5629,508,0 1/1:0,29:29:84.17:885,84,0 1/1:0,22:22:63.14:684,63,0 1/1:1,34:35:48.61:904,49,0 1/1:0,22:22:57.08:607,57,0 1/1:0,84:84:99:2319,228,0 1/1:0,31:31:87.19:966,87,0 1/1:0,23:23:69.16:759,69,0 1/1:0,24:25:69.12:736,69,0 1/1:0,22:22:63.09:648,63,0 1/1:0,21:21:54.09:561,54,0 1 26608819 . AGGGACTGGGGCCGGGACCGGGACC A 6381.16 . AC=75;AF=0.962;AN=78;BaseQRankSum=7.797;DP=2270;FS=123.442;HRun=0;HaplotypeScore=1162.8821;InbreedingCoeff=0.2945;MQ=51.13;MQ0=5;MQRankSum=4.448;QD=2.83;ReadPosRankSum=6.110 GT:AD:DP:GQ:PL ./.:.:27:.:0,0,0 1/1:23,0:23:1.09:0,1,3 1/1:15,0:15:1.76:0,0,0 1/1:97,31:125:93.20:1074,93,0 0/1:49,6:55:99:237,0,553 1/1:62,7:66:19.27:210,19,0 1/1:38,3:40:9:89,9,0 1/1:36,4:38:9.01:102,9,0 1/1:22,0:21:4.11:35,4,0 0/0:17,0:17:6.02:0,6,159 ./.:.:19:.:0,0,0 1/1:21,0:21:5.80:82,6,0 1/1:14,1:14:3:31,3,0 1/1:29,0:29:1.24:3,1,0 1/1:170,35:195:95.44:1120,95,0 1/1:37,1:37:4.25:58,4,0 1/1:30,0:29:1.09:0,1,3 1/1:29,0:29:6:79,6,0 1/1:126,20:144:52.09:528,52,0 1/1:216,2:216:32.19:282,32,0 1/1:107,28:134:74.22:852,74,0 1/1:58,4:62:12.02:121,12,0 1/1:90,6:96:15.01:243,15,0 1/1:52,2:54:13.16:148,13,0 1/1:37,3:39:10.71:118,11,0 1/1:39,3:42:12.02:125,12,0 1/1:26,0:26:2.99:24,3,0 1/1:29,1:29:5.04:36,5,0 1/1:22,1:22:2.75:24,0,1 1/1:19,0:19:1.71:4,2,0 ./.:.:28:.:0,0,0 1/1:192,0:191:14.96:138,15,0 1/1:38,0:38:6.10:22,6,0 1/1:22,1:23:2.87:32,3,0 1/1:33,0:33:1.09:0,1,3 1/1:22,1:23:3:32,3,0 1/1:91,1:92:29.04:284,29,0 1/1:30,2:32:12.03:128,12,0 1/1:27,0:26:3.01:63,3,0 1/1:24,0:24:4.80:27,5,0 1/1:23,0:23:2.03:6,2,0 1/1:20,1:21:3:25,3,0 1 26608843 . C CGGGACA 29948.93 . AC=45;AF=0.536;AN=84;BaseQRankSum=-8.382;DP=2090;FS=166.871;HRun=0;HaplotypeScore=523.6579;InbreedingCoeff=-0.8253;MQ=53.35;MQ0=16;MQRankSum=5.019;QD=14.33;ReadPosRankSum=-20.772 GT:AD:DP:GQ:PL 0/1:21,0:23:2.76:0,1,949 0/1:16,3:21:99:137,0,689 0/1:24,0:23:4.84:5,0,995 0/1:93,13:105:99:932,0,2995 0/1:79,12:88:99:255,0,2921 0/1:52,4:51:99:344,0,1589 0/1:27,3:30:99:185,0,908 0/1:36,2:34:56.70:57,0,1403 0/1:9,8:18:99:840,0,258 0/1:14,3:17:99:122,0,559 0/1:14,5:20:99:146,0,603 1/1:7,12:19:44.49:1453,44,0 0/1:10,3:11:99:321,0,196 1/1:13,12:28:75.17:1920,75,0 0/1:151,17:148:99:744,0,5273 0/1:24,12:40:99:506,0,1130 0/1:19,4:26:99:193,0,613 0/1:12,7:20:99:688,0,432 0/1:114,12:114:99:596,0,3826 0/1:128,26:176:99:1203,0,5622 0/1:98,8:97:99:761,0,2473 0/1:38,7:45:99:192,0,1498 0/1:59,7:77:99:603,0,2536 0/1:37,16:51:99:1317,0,991 0/1:22,14:37:99:1411,0,425 0/1:20,12:33:99:968,0,624 0/1:14,7:21:99:842,0,358 0/1:17,11:30:99:943,0,331 0/1:17,4:22:91.90:92,0,689 0/1:14,5:19:99:400,0,393 0/1:27,0:25:99:101,0,907 0/1:131,23:163:99:854,0,5816 0/1:32,11:42:99:867,0,1254 0/1:19,3:20:40.35:40,0,904 0/1:23,7:32:99:220,0,832 0/1:14,5:22:99:238,0,519 1/1:50,56:107:99:6295,161,0 0/1:20,6:27:99:695,0,631 0/1:16,12:31:99:1327,0,316 0/1:15,5:21:99:451,0,490 0/1:19,3:23:99:558,0,713 0/1:13,3:18:99:125,0,500 1 26608849 . T C 197.57 . AC=6;AF=0.071;AN=84;BaseQRankSum=-5.718;DP=2126;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=30.3588;InbreedingCoeff=-0.0895;MQ=53.70;MQ0=20;MQRankSum=-3.047;QD=1.12;ReadPosRankSum=-8.503 GT:AD:DP:GQ:PL 0/0:27,0:27:75.20:0,75,854 0/0:23,0:23:60.14:0,60,684 0/0:26,0:26:69.14:0,69,784 0/0:109,0:110:99:0,313,3799 0/0:97,0:97:99:0,232,2878 0/0:56,0:56:99:0,147,1764 0/0:44,0:44:99:0,108,1318 0/0:39,0:40:96.29:0,96,1175 0/0:19,1:20:15.85:0,16,506 0/0:14,0:14:42.10:0,42,499 0/0:21,0:21:57.18:0,57,701 0/1:15,3:18:33.75:34,0,408 0/0:13,0:13:33.09:0,33,390 0/0:18,2:20:0.83:7,0,532 0/0:184,0:186:99:0,445,5357 0/0:47,0:47:99:0,126,1523 0/0:29,0:29:78.24:0,78,941 0/0:16,1:17:15.02:0,15,527 0/0:133,1:134:99:0,306,3900 0/0:191,0:193:99:0,526,6277 0/0:110,0:113:99:0,271,3284 0/0:47,1:48:99:0,105,1459 0/0:84,0:84:99:0,232,2822 0/0:42,1:44:98.56:0,99,1325 0/1:35,7:42:99:130,0,868 0/0:34,1:36:65.61:0,66,1088 0/1:17,4:21:67.35:67,0,474 0/1:24,3:27:28.59:29,0,708 0/0:24,0:25:69.18:0,69,814 0/0:15,0:15:45.13:0,45,517 0/0:28,0:28:69.20:0,69,798 0/0:184,0:185:99:0,499,5914 0/1:42,5:47:28.36:28,0,1156 0/0:27,0:27:72.21:0,72,856 0/0:27,1:28:78.22:0,78,945 0/0:21,1:22:57.16:0,57,682 0/0:71,6:78:16.24:0,16,2041 0/0:28,2:31:18.92:0,19,765 0/0:30,0:30:84.21:0,84,984 0/0:20,0:20:54.11:0,54,606 0/1:19,3:22:11.43:11,0,571 0/0:17,1:18:12.55:0,13,519 1 26608852 . G A 22809.61 . AC=33;AF=0.393;AN=84;BaseQRankSum=-11.311;DP=2192;Dels=0.00;FS=461.296;HRun=0;HaplotypeScore=19.4823;InbreedingCoeff=-0.6470;MQ=53.48;MQ0=22;MQRankSum=20.332;QD=11.97;ReadPosRankSum=-3.674 GT:AD:DP:GQ:PL 0/1:20,4:24:49.01:49,0,527 0/1:17,7:24:99:115,0,493 0/0:27,0:27:66.17:0,66,777 0/1:48,68:116:99:1899,0,1237 0/1:73,30:103:99:784,0,1915 0/1:36,18:54:99:405,0,1060 0/1:18,25:43:99:709,0,313 0/1:29,13:42:99:227,0,678 0/1:17,7:24:99:163,0,419 0/0:14,0:14:39.11:0,39,475 0/1:9,16:25:99:471,0,207 0/0:22,0:22:66.13:0,66,735 0/1:11,5:16:99:135,0,252 0/0:22,0:22:66.16:0,66,749 0/1:97,99:196:99:2524,0,1970 0/1:20,28:48:99:825,0,497 0/1:12,17:29:99:451,0,270 0/1:13,2:15:26.20:26,0,409 0/1:71,58:129:99:1474,0,1598 0/1:99,102:202:99:2929,0,2505 0/1:48,66:114:99:1828,0,911 0/1:26,23:49:99:583,0,716 0/1:43,44:87:99:1329,0,1037 0/1:28,12:40:99:295,0,733 0/1:32,15:47:99:364,0,744 0/1:22,14:36:99:332,0,638 0/1:15,4:20:91.06:91,0,415 0/1:21,11:32:99:257,0,610 0/1:10,12:22:99:292,0,305 0/0:17,0:17:48.11:0,48,538 0/0:28,0:28:78.17:0,78,843 0/1:98,91:189:99:2475,0,2661 0/0:48,0:48:99:0,129,1447 0/1:16,13:29:99:283,0,426 0/1:13,15:28:99:415,0,382 0/1:10,14:24:99:349,0,224 0/0:86,1:87:99:0,225,2654 0/1:27,6:33:99:110,0,691 0/1:17,11:28:99:295,0,382 0/1:16,4:20:79.89:80,0,395 0/0:21,1:22:29.20:0,29,687 0/1:9,8:17:99:246,0,206 1 26608853 . G A 917.32 . AC=12;AF=0.143;AN=84;BaseQRankSum=-8.906;DP=2193;Dels=0.00;FS=5.644;HRun=0;HaplotypeScore=15.7017;InbreedingCoeff=-0.1705;MQ=53.45;MQ0=22;MQRankSum=-4.747;QD=2.34;ReadPosRankSum=-8.193 GT:AD:DP:GQ:PL 0/0:24,0:24:63.18:0,63,742 0/0:24,0:24:63.15:0,63,732 0/0:26,0:26:69.16:0,69,783 0/0:114,0:114:99:0,325,4143 0/0:105,0:105:99:0,265,3412 0/0:54,0:55:99:0,144,1774 0/0:42,0:42:99:0,99,1273 0/0:42,0:42:90.28:0,90,1163 0/1:20,3:23:41.60:42,0,540 0/0:14,0:14:39.12:0,39,477 0/0:25,0:25:72.19:0,72,873 0/1:16,6:22:99:140,0,428 0/1:13,4:17:63.55:64,0,355 0/1:18,4:22:74.79:75,0,537 0/0:198,0:198:99:0,475,5872 0/0:48,0:48:99:0,132,1647 0/0:26,0:26:63.18:0,63,759 0/0:13,1:14:5.14:0,5,420 0/0:132,0:133:99:0,322,3812 0/0:200,0:201:99:0,545,6667 0/0:116,0:117:99:0,289,3567 0/0:47,0:47:99:0,129,1601 0/0:86,0:86:99:0,241,3134 0/0:39,1:40:72.11:0,72,1238 0/1:37,11:48:99:168,0,1014 0/0:36,1:37:68.86:0,69,1224 0/1:15,5:20:90.52:91,0,426 0/1:26,6:32:99:122,0,769 0/0:22,0:22:60.18:0,60,737 0/1:13,4:17:64.90:65,0,362 0/0:27,0:27:75.20:0,75,839 0/0:193,0:193:99:0,521,6452 0/1:42,6:48:31.77:32,0,1164 0/0:29,0:29:78.22:0,78,943 0/0:27,0:27:78.22:0,78,962 0/0:24,0:24:63.17:0,63,771 0/1:73,13:87:99:174,0,1943 0/1:29,4:34:52.53:53,0,843 0/0:26,0:26:75.19:0,75,898 0/0:19,0:19:51.09:0,51,588 0/1:19,3:22:37.42:37,0,580 0/0:16,0:16:45.13:0,45,537 1 26608866 . C G 51.92 . 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C A 7370.12 . 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T A 1057.04 . 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T TG 2228.65 . 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G A 869.17 . 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GCCGGGA G 21630.88 . 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C T 8370.91 . 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A T 8918.78 . 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C G 5488.70 . 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C CTGGGGCCGGGACCGGGAG 20240.10 . 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A C 2554.61 . AC=1;AF=0.012;AN=84;BaseQRankSum=7.365;DP=4486;DS;Dels=0.00;FS=36.893;HRun=1;HaplotypeScore=12.1684;InbreedingCoeff=-0.0120;MQ=54.72;MQ0=3;MQRankSum=2.821;QD=11.56;ReadPosRankSum=-0.814 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,147,1723 0/0:59,0:59:99:0,165,1998 0/0:34,0:34:96.26:0,96,1138 0/0:250,0:250:99:0,644,7958 0/1:127,89:221:99:2601,0,3631 0/0:146,0:146:99:0,394,4747 0/0:130,0:130:99:0,340,4173 0/0:102,0:102:99:0,271,3261 0/0:64,0:65:99:0,184,2184 0/0:49,0:49:99:0,141,1699 0/0:76,0:76:99:0,205,2496 0/0:49,0:49:99:0,141,1639 0/0:41,0:41:99:0,111,1351 0/0:45,0:45:99:0,126,1446 0/0:250,0:250:99:0,662,7765 0/0:113,0:113:99:0,319,3795 0/0:87,0:87:99:0,238,2847 0/0:46,0:46:99:0,132,1560 0/0:249,1:250:99:0,645,8039 0/0:250,0:250:99:0,671,7970 0/0:250,0:250:99:0,665,8004 0/0:110,0:110:99:0,289,3438 0/0:250,0:250:99:0,686,8336 0/0:108,0:108:99:0,298,3626 0/0:134,0:134:99:0,355,4250 0/0:91,0:91:99:0,253,3021 0/0:46,0:46:99:0,132,1582 0/0:79,0:79:99:0,226,2689 0/0:68,0:68:99:0,190,2300 0/0:35,0:35:99:0,99,1153 0/0:37,0:37:99:0,108,1243 0/0:249,0:250:99:0,668,8022 0/0:62,0:62:99:0,177,1989 0/0:70,0:70:99:0,196,2386 0/0:80,0:81:99:0,214,2566 0/0:76,0:77:99:0,208,2476 0/0:124,0:124:99:0,334,3782 0/0:65,0:65:99:0,184,2153 0/0:65,0:65:99:0,178,2136 0/0:59,0:59:99:0,159,1904 0/0:38,0:38:99:0,111,1275 0/0:73,0:73:99:0,211,2494 1 26610891 . A C 41256.27 . 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T C 66343.48 . AC=60;AF=0.714;AN=84;BaseQRankSum=10.498;DP=4157;Dels=0.00;FS=1190.119;HRun=1;HaplotypeScore=5.1908;InbreedingCoeff=0.0667;MQ=59.08;MQ0=0;MQRankSum=-1.793;QD=17.47;ReadPosRankSum=-4.193 GT:AD:DP:GQ:PL 1/1:0,63:80:99:1828,147,0 1/1:0,50:60:99:1481,120,0 0/1:43,23:72:99:612,0,1178 1/1:0,132:201:99:4226,331,0 0/1:101,67:196:99:1736,0,2833 1/1:0,100:139:99:3152,247,0 1/1:0,78:97:99:2580,196,0 1/1:0,83:114:99:2304,181,0 0/1:54,32:93:99:775,0,1483 0/0:82,0:82:99:0,217,2667 1/1:0,59:72:99:1914,159,0 0/0:72,1:74:99:0,176,2489 0/1:28,20:51:99:490,0,769 0/0:92,1:94:99:0,192,2850 1/1:0,189:244:99:6248,511,0 1/1:0,66:85:99:2023,168,0 1/1:0,56:65:99:1673,132,0 0/1:56,21:82:99:463,0,1650 1/1:0,66:85:99:2123,175,0 1/1:0,84:97:99:2431,199,0 1/1:0,77:102:99:2459,205,0 1/1:0,45:62:99:1298,111,0 1/1:0,145:209:99:4841,370,0 0/1:83,36:132:99:876,0,2397 0/1:63,53:136:99:1447,0,1885 0/1:73,41:127:99:851,0,2032 0/1:38,27:71:99:631,0,1101 0/1:47,31:86:99:762,0,1331 1/1:1,50:67:99:1709,138,0 0/1:49,28:87:99:604,0,1418 1/1:0,54:63:99:1699,138,0 1/1:0,99:115:99:2700,220,0 0/1:43,37:88:99:737,0,1143 1/1:0,50:70:99:1544,126,0 1/1:1,67:87:99:2052,144,0 1/1:0,69:89:99:2075,168,0 0/0:110,0:110:99:0,286,3575 0/1:44,26:78:99:686,0,1140 0/1:33,25:67:99:577,0,1035 0/1:55,23:87:99:489,0,1619 0/1:38,29:75:99:780,0,1148 1/1:0,51:65:99:1464,117,0 1 26646726 . A G 74116.23 . 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A G 75208.50 . 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A G 496.03 . 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G A 12406.55 . AC=12;AF=0.143;AN=84;BaseQRankSum=-7.838;DP=3811;DS;Dels=0.00;FS=32.872;HRun=0;HaplotypeScore=1.5217;InbreedingCoeff=0.0278;MQ=59.34;MQ0=0;MQRankSum=2.337;QD=13.21;ReadPosRankSum=-0.887 GT:AD:DP:GQ:PL 0/0:86,0:86:99:0,229,2799 0/0:81,0:81:99:0,211,2569 0/0:73,0:73:99:0,205,2481 0/1:65,47:112:99:1275,0,1977 0/0:112,0:112:99:0,316,4167 0/1:44,45:89:99:1312,0,1350 0/0:71,0:71:99:0,190,2489 0/1:49,47:96:99:1318,0,1453 1/1:0,54:54:99:1804,150,0 0/1:45,19:64:99:483,0,1296 0/1:39,37:76:99:1031,0,1120 0/0:78,0:78:99:0,217,2622 0/1:38,19:57:99:501,0,1097 0/0:76,0:76:99:0,217,2604 0/0:230,0:230:99:0,587,7195 0/0:82,0:82:99:0,232,2727 0/0:87,0:87:99:0,250,2964 0/0:82,1:83:99:0,196,2733 0/0:134,0:136:99:0,370,4369 0/0:110,0:111:99:0,283,3479 0/0:132,1:133:99:0,358,4248 0/0:65,2:67:99:0,136,2105 0/1:82,58:140:99:1525,0,2678 0/0:114,0:115:99:0,313,4142 0/0:108,0:108:99:0,292,3887 0/0:84,0:84:99:0,229,3039 0/0:68,0:68:99:0,187,2251 0/0:83,0:83:99:0,232,2767 0/0:100,0:100:99:0,265,3195 0/0:83,0:83:99:0,211,2563 0/0:65,0:65:99:0,190,2272 0/0:100,0:100:99:0,256,3130 0/0:92,0:92:99:0,244,3001 0/0:63,0:63:99:0,174,2071 0/1:44,27:71:99:737,0,1216 0/0:83,0:83:99:0,232,2838 0/1:51,42:93:99:1198,0,1433 0/0:89,0:89:99:0,250,2980 0/1:45,42:87:99:1222,0,1289 0/0:79,1:80:99:0,190,2653 0/0:68,0:68:99:0,202,2370 0/0:85,0:85:99:0,235,2825 1 26795594 . T TG 240.20 . AC=6;AF=0.071;AN=84;BaseQRankSum=1.145;DP=1893;FS=501.371;HRun=2;HaplotypeScore=118.0619;InbreedingCoeff=-0.1095;MQ=57.23;MQ0=0;MQRankSum=0.585;QD=0.67;ReadPosRankSum=-10.731 GT:AD:DP:GQ:PL 0/0:28,0:28:17.49:0,17,396 0/0:29,0:28:29.14:0,29,487 0/0:29,0:28:50.12:0,50,669 0/1:102,0:102:32.77:33,0,1469 0/0:62,18:80:55.37:0,55,1101 0/0:60,0:60:18.87:0,19,831 0/0:58,0:58:61.36:0,61,993 0/0:57,0:56:92.91:0,93,1200 0/0:38,0:38:56.98:0,57,675 0/0:31,0:31:58.37:0,58,591 0/1:29,0:29:32.70:33,0,407 0/0:31,0:31:26.74:0,27,578 0/0:26,0:26:51.07:0,51,593 0/0:43,0:43:29.72:0,30,728 0/0:101,0:101:77.01:0,77,1832 0/0:36,0:36:2.59:1,0,550 0/0:32,0:32:20.72:0,21,602 0/0:25,0:25:43.09:0,43,506 0/1:49,0:49:83.42:83,0,635 0/0:66,0:66:50.63:0,51,1228 0/0:60,0:60:43.81:0,44,1059 0/0:46,0:44:43.87:0,44,763 0/1:92,0:92:50.76:51,0,1268 0/0:56,0:56:40.16:0,40,932 0/0:64,0:62:48.01:0,48,779 0/0:46,0:43:53.18:0,53,685 0/0:24,0:24:43.86:0,44,492 0/0:28,0:28:3.91:0,4,503 0/0:32,0:32:53.66:0,54,676 0/1:33,0:33:74.43:74,0,364 0/0:37,0:37:31.66:0,32,745 0/0:51,0:51:83.02:0,83,1032 0/0:39,0:39:53.97:0,54,606 0/0:41,0:41:47.04:0,47,746 0/0:34,0:34:5.79:0,6,612 0/0:41,0:41:37.99:0,38,637 0/1:55,0:55:77.17:77,0,598 0/0:29,0:29:1.02:6,0,545 0/0:35,0:35:28.54:0,29,854 0/0:31,0:31:1.85:0,2,445 0/0:39,0:39:43.24:0,43,808 0/0:30,0:30:19.40:0,19,453 1 26795597 . C G 287.76 . AC=8;AF=0.095;AN=84;BaseQRankSum=-12.602;DP=1683;Dels=0.00;FS=289.475;HRun=2;HaplotypeScore=0.9388;InbreedingCoeff=-0.1203;MQ=57.36;MQ0=0;MQRankSum=-0.996;QD=0.90;ReadPosRankSum=-11.298 GT:AD:DP:GQ:PL 0/0:20,5:25:7.42:0,7,351 0/0:20,8:29:48.14:0,48,581 0/0:23,3:26:54.15:0,54,665 0/0:70,24:94:0.80:7,0,1575 0/0:52,3:55:99:0,117,1365 0/0:41,11:53:21.50:0,22,843 0/0:43,9:52:51.74:0,52,1001 0/0:41,10:51:72.59:0,73,1187 0/0:31,3:34:51.12:0,51,599 0/0:24,4:28:48.14:0,48,583 0/1:15,8:24:48.40:48,0,482 0/0:23,6:30:27.52:0,28,614 0/0:20,3:23:54.14:0,54,660 0/0:28,7:35:15.93:0,16,710 0/0:65,23:88:64.08:0,64,1910 0/1:23,11:34:7.93:8,0,544 0/0:26,6:32:29.48:0,29,632 0/0:18,2:20:42.10:0,42,501 0/1:30,17:47:99:100,0,679 0/0:48,13:61:51.01:0,51,1135 0/0:42,13:55:49.11:0,49,1134 0/0:32,11:44:24.53:0,25,598 0/1:58,26:84:48.22:48,0,1338 0/0:42,10:52:52.49:0,52,881 0/0:43,16:59:66.04:0,66,754 0/0:27,10:37:60.10:0,60,681 0/0:19,1:20:42.09:0,42,498 0/0:19,4:23:20.83:0,21,505 0/0:23,3:26:54.14:0,54,643 0/1:21,11:32:71.05:71,0,436 0/0:27,5:32:12.07:0,12,710 0/0:37,6:43:87.18:0,87,997 0/0:32,4:36:51.13:0,51,596 0/0:27,8:36:63.12:0,63,718 0/0:27,6:33:31.31:0,31,620 0/0:23,11:34:54.11:0,54,622 0/1:28,16:44:74.20:74,0,625 0/1:21,5:26:8.95:9,0,533 0/0:28,5:33:39.08:0,39,836 0/1:21,8:30:41.64:42,0,374 0/0:26,11:37:20.99:0,21,797 0/0:19,7:26:6.88:0,7,453 1 26887592 . T C 21305.85 . AC=24;AF=0.286;AN=84;BaseQRankSum=-15.945;DP=2997;Dels=0.00;FS=1.032;HRun=0;HaplotypeScore=1.9555;InbreedingCoeff=-0.0500;MQ=59.32;MQ0=0;MQRankSum=-1.434;QD=14.96;ReadPosRankSum=-1.182 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,159,1934 0/1:38,33:71:99:836,0,1004 0/1:31,18:49:99:432,0,902 0/1:62,48:110:99:1313,0,1700 0/0:99,0:99:99:0,262,3299 0/0:101,0:101:99:0,259,3295 0/1:30,30:60:99:813,0,842 0/0:86,0:86:99:0,226,2850 1/1:0,52:52:99:1584,138,0 0/1:30,23:54:99:553,0,842 1/1:0,59:59:99:1818,159,0 0/0:53,0:53:99:0,147,1788 0/1:29,19:48:99:414,0,870 0/1:27,26:54:99:627,0,751 0/0:188,0:188:99:0,487,5989 0/0:52,0:52:99:0,138,1700 0/1:36,34:70:99:829,0,1032 0/0:59,1:60:99:0,134,1941 0/0:101,0:101:99:0,265,3296 0/1:51,59:110:99:1539,0,1355 0/0:98,0:98:99:0,256,3217 0/0:72,0:72:99:0,184,2259 0/1:60,54:114:99:1557,0,1591 0/1:39,42:81:99:1158,0,1038 0/1:34,54:88:99:1450,0,921 0/0:91,0:92:99:0,220,2833 0/0:45,0:45:99:0,114,1421 0/0:56,0:56:99:0,156,1907 0/0:45,0:45:99:0,123,1499 0/0:53,0:53:99:0,144,1778 0/0:46,1:47:99:0,103,1588 0/0:93,0:93:99:0,232,2953 0/0:73,0:73:99:0,187,2285 0/0:53,0:53:99:0,144,1803 0/1:24,33:57:99:839,0,584 0/1:31,32:63:99:811,0,864 1/1:0,70:70:99:2135,186,0 0/1:21,27:48:99:718,0,573 0/1:34,27:61:99:653,0,926 0/1:28,19:47:99:468,0,734 0/0:47,0:47:99:0,129,1582 0/1:30,28:58:99:759,0,863 1 27056261 . G C 10.97 . AC=2;AF=0.024;AN=84;BaseQRankSum=-14.856;DP=2170;Dels=0.00;FS=99.744;HRun=1;HaplotypeScore=5.4034;InbreedingCoeff=-0.0315;MQ=58.45;MQ0=0;MQRankSum=3.619;QD=0.10;ReadPosRankSum=-11.144 GT:AD:DP:GQ:PL 0/1:21,8:29:21.83:22,0,505 0/0:34,4:38:69.18:0,69,825 0/0:23,3:26:32.44:0,32,576 0/0:107,17:124:99:0,242,3179 0/0:91,19:110:88.05:0,88,2649 0/0:58,11:69:73.41:0,73,1661 0/0:72,8:81:99:0,131,1824 0/0:61,6:67:88.15:0,88,1566 0/0:31,11:43:52.53:0,53,847 0/0:25,1:26:54.12:0,54,603 0/0:25,8:33:29.50:0,29,621 0/0:35,6:41:56.78:0,57,960 0/0:33,7:40:46.29:0,46,736 0/0:31,7:38:50.45:0,50,757 0/0:92,16:109:99:0,156,2237 0/0:30,4:34:75.20:0,75,862 0/0:28,6:34:59.44:0,59,835 0/0:27,3:30:66.20:0,66,797 0/0:44,14:58:9.52:0,10,962 0/0:76,6:82:99:0,164,2027 0/1:55,20:76:49.98:50,0,1351 0/0:46,4:50:64.93:0,65,1166 0/0:77,12:89:99:0,102,2147 0/0:36,6:42:87.26:0,87,1073 0/0:77,6:83:92.16:0,92,2221 0/0:47,5:52:32.64:0,33,1292 0/0:23,0:23:45.08:0,45,497 0/0:43,3:46:86.84:0,87,1290 0/0:27,1:28:54.07:0,54,577 0/0:28,4:32:17.87:0,18,693 0/0:32,4:36:56.49:0,56,868 0/0:65,9:76:99:0,104,1831 0/0:46,15:61:73.92:0,74,1172 0/0:29,4:33:69.08:0,69,730 0/0:33,10:43:31.06:0,31,897 0/0:41,5:46:71.67:0,72,1131 0/0:39,18:58:2.52:0,3,925 0/0:33,4:38:87.18:0,87,990 0/0:31,7:38:62.50:0,63,879 0/0:28,7:35:72.12:0,72,794 0/0:31,8:39:47.55:0,48,806 0/0:27,7:34:9.80:0,10,587 1 27102089 . T G 17.72 . AC=1;AF=0.012;AN=84;BaseQRankSum=-11.477;DP=1566;Dels=0.00;FS=90.192;HRun=3;HaplotypeScore=0.6557;InbreedingCoeff=-0.0276;MQ=59.04;MQ0=0;MQRankSum=0.849;QD=0.35;ReadPosRankSum=-3.993 GT:AD:DP:GQ:PL 0/0:22,8:30:66.17:0,66,755 0/0:27,11:38:81.21:0,81,939 0/0:20,13:33:57.16:0,57,663 0/0:30,17:47:57.45:0,57,822 0/0:35,28:63:71.01:0,71,985 0/0:27,7:35:69.20:0,69,830 0/0:24,13:37:34.50:0,34,655 0/0:28,12:40:84.18:0,84,935 0/0:23,11:35:39.41:0,39,627 0/0:24,9:33:37.43:0,37,650 0/0:18,16:36:48.09:0,48,514 0/0:18,5:23:51.11:0,51,564 0/0:16,15:31:45.06:0,45,476 0/0:20,9:29:51.15:0,51,606 0/0:62,33:96:99:0,123,1960 0/0:20,6:26:57.13:0,57,630 0/0:11,10:21:33.09:0,33,372 0/0:24,9:33:72.18:0,72,820 0/0:29,16:45:4.07:0,4,641 0/0:32,8:40:84.17:0,84,914 0/1:28,22:51:61.28:61,0,813 0/0:29,9:38:73.69:0,74,803 0/0:43,27:70:99:0,123,1374 0/0:22,10:32:54.10:0,54,594 0/0:24,18:42:37.44:0,37,626 0/0:17,7:24:45.08:0,45,504 0/0:18,13:31:51.03:0,51,512 0/0:29,9:38:58.47:0,58,840 0/0:12,14:26:0.13:15,0,343 0/0:27,11:38:75.17:0,75,844 0/0:22,11:33:63.14:0,63,707 0/0:26,11:39:72.16:0,72,794 0/0:28,10:38:78.11:0,78,825 0/0:15,9:24:36.09:0,36,408 0/0:24,8:32:46.50:0,46,752 0/0:21,10:32:57.10:0,57,619 0/0:22,11:33:33.07:0,33,729 0/0:27,10:37:75.18:0,75,842 0/0:20,9:29:57.15:0,57,645 0/0:29,12:41:72.18:0,72,831 0/0:17,9:26:45.12:0,45,516 0/0:25,16:41:66.15:0,66,755 1 27102188 . A G 1687.69 . AC=2;AF=0.024;AN=84;BaseQRankSum=10.477;DP=2254;Dels=0.00;FS=2.186;HRun=0;HaplotypeScore=0.7493;InbreedingCoeff=-0.0244;MQ=59.32;MQ0=0;MQRankSum=1.879;QD=15.63;ReadPosRankSum=-0.861 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,138,1685 0/0:34,0:34:96.30:0,96,1178 0/0:44,0:44:99:0,123,1511 0/0:71,0:71:99:0,187,2344 0/0:77,1:78:99:0,208,2604 0/1:25,35:61:99:966,0,752 0/0:49,0:49:99:0,129,1677 0/1:21,26:47:99:784,0,618 0/0:34,0:34:99:0,99,1200 0/0:37,0:37:99:0,105,1259 0/0:61,0:61:99:0,171,2042 0/0:38,0:38:99:0,99,1237 0/0:49,0:49:99:0,129,1593 0/0:40,0:40:99:0,108,1346 0/0:183,0:183:99:0,460,5673 0/0:38,0:38:99:0,102,1233 0/0:43,0:43:99:0,120,1463 0/0:27,0:27:75.22:0,75,898 0/0:76,1:77:99:0,181,2454 0/0:80,0:81:99:0,208,2599 0/0:64,0:64:99:0,175,2148 0/0:39,0:39:99:0,108,1304 0/0:99,0:99:99:0,253,3214 0/0:51,0:51:99:0,144,1813 0/0:78,0:78:99:0,193,2489 0/0:54,0:54:99:0,141,1792 0/0:37,0:37:99:0,102,1236 0/0:40,0:41:99:0,111,1363 0/0:33,0:33:90.27:0,90,1090 0/0:42,0:42:99:0,108,1325 0/0:33,0:33:96.29:0,96,1168 0/0:56,0:56:99:0,153,1870 0/0:43,0:43:99:0,123,1472 0/0:51,0:51:99:0,138,1699 0/0:51,0:51:99:0,138,1712 0/0:49,0:49:99:0,120,1487 0/0:76,0:76:99:0,196,2441 0/0:46,0:46:99:0,120,1505 0/0:38,1:39:99:0,105,1275 0/0:52,0:52:99:0,144,1757 0/0:37,0:37:99:0,102,1248 0/0:41,0:41:99:0,120,1424 1 27179296 . A C 175.70 . 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C T 5313.47 . 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G T 484.95 . AC=17;AF=0.258;AN=66;BaseQRankSum=2.907;DP=67;Dels=0.00;FS=1.066;HRun=1;HaplotypeScore=0.0535;InbreedingCoeff=0.3210;MQ=54.05;MQ0=0;MQRankSum=0.021;QD=20.21;ReadPosRankSum=-0.235 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.02:0,6,65 ./. ./. 0/0:1,0:1:3.01:0,3,33 ./. 1/1:0,2:2:6.02:75,6,0 0/0:1,0:1:3.01:0,3,30 1/1:0,1:1:3.01:35,3,0 1/1:0,2:2:6.02:67,6,0 ./. ./. 0/1:0,1:1:1.76:32,3,0 0/0:1,0:1:3.01:0,3,32 0/0:1,0:1:3.01:0,3,32 0/1:3,4:7:83.91:98,0,84 0/0:3,0:3:6.01:0,6,64 ./. 1/1:0,2:2:6.02:67,6,0 0/1:1,3:4:27.95:69,0,28 0/0:2,0:2:6.02:0,6,68 0/0:4,0:4:9.03:0,9,112 0/0:2,0:2:6.02:0,6,79 0/0:1,0:1:3.01:0,3,40 0/0:1,0:1:3:0,3,29 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.03:0,9,106 0/0:2,0:2:6.02:0,6,68 ./. 1/1:0,3:3:9.03:105,9,0 0/0:2,0:2:3:0,3,25 0/0:5,0:5:12.03:0,12,137 1/1:0,1:1:3.01:32,3,0 0/0:2,0:2:6.01:0,6,64 0/0:2,0:2:3:0,3,29 0/0:1,0:1:3.01:0,3,36 0/0:2,0:2:6.02:0,6,71 0/0:1,0:1:2.98:0,3,22 ./. 0/0:2,0:2:6.02:0,6,66 1/1:0,1:1:3.01:38,3,0 ./. 1 27660731 . G C 1433.03 . 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C T 909.52 . 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A G 760.38 . 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G A 22 . AC=4;AF=0.048;AN=84;BaseQRankSum=-6.836;DP=662;Dels=0.00;FS=96.050;HRun=2;HaplotypeScore=0.8915;InbreedingCoeff=-0.0928;MQ=58.57;MQ0=1;MQRankSum=-0.829;QD=0.28;ReadPosRankSum=-3.485 GT:AD:DP:GQ:PL 0/0:9,1:10:24.05:0,24,280 0/0:10,1:11:21.05:0,21,248 0/0:8,1:9:21.06:0,21,252 0/0:39,8:48:72.20:0,72,871 0/1:35,8:44:20.39:20,0,806 0/0:24,7:31:50.12:0,50,579 0/0:11,3:15:18.05:0,18,218 0/0:25,5:30:29.51:0,30,667 0/0:7,0:7:18.06:0,18,225 0/0:12,2:14:19.85:0,20,212 0/0:4,0:4:12.03:0,12,145 0/0:14,3:17:30.05:0,30,330 0/0:7,1:8:12.03:0,12,141 0/0:4,1:5:12.04:0,12,145 0/0:32,9:41:17.53:0,18,785 0/0:8,2:10:18.03:0,18,188 0/0:5,0:5:12.04:0,12,144 0/0:3,1:4:6:0,6,59 0/0:10,1:11:30.08:0,30,353 0/0:19,0:19:48.12:0,48,574 0/0:13,1:14:30.08:0,30,351 0/0:8,6:14:1.29:5,0,215 0/0:30,7:37:44.46:0,44,702 0/0:22,4:26:8.67:0,9,421 0/0:25,3:28:26.43:0,26,590 0/0:16,3:19:36.11:0,36,449 0/0:4,1:5:12.03:0,12,137 0/0:8,1:9:17.99:0,18,172 0/0:4,1:5:9:0,9,86 0/0:7,2:9:18.05:0,18,208 0/0:7,0:7:12.04:0,12,151 0/0:31,0:31:63.07:0,63,682 0/0:10,3:13:0.48:9,0,240 0/0:10,2:12:24.06:0,24,269 0/0:8,1:9:15.05:0,15,197 0/0:11,2:13:27.06:0,27,314 0/1:14,3:17:32.60:33,0,314 0/1:5,2:7:13.61:14,0,133 0/0:11,2:13:23.44:0,23,271 0/0:5,2:7:9.03:0,9,117 0/1:7,4:11:35.08:35,0,146 0/0:10,3:13:0.43:0,0,272 1 27706621 . G A 2121.80 . 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T G 348.88 . AC=13;AF=0.155;AN=84;BaseQRankSum=-37.009;DP=4938;DS;Dels=0.00;FS=2753.173;HRun=1;HaplotypeScore=3.2995;InbreedingCoeff=-0.1994;MQ=59.15;MQ0=0;MQRankSum=-0.376;QD=0.22;ReadPosRankSum=-27.908 GT:AD:DP:GQ:PL 0/0:58,21:79:2.68:1,0,1728 0/0:69,18:87:99:0,128,2239 0/1:66,29:95:23.34:23,0,2046 0/1:123,65:188:31.41:31,0,3743 0/0:120,57:177:16.55:0,17,3835 0/0:91,45:136:54.89:0,55,3001 0/0:92,33:125:99:0,101,3005 0/0:80,30:110:99:0,109,2663 0/0:88,26:115:99:0,148,2844 0/0:68,18:87:10.58:0,11,2102 0/0:54,23:77:60.95:0,61,1769 0/0:80,28:108:99:0,138,2647 0/1:60,38:98:25.75:26,0,1840 0/0:62,27:89:32.60:0,33,1917 0/1:166,72:239:99:194,0,5035 0/1:57,23:80:8.59:9,0,1748 0/0:91,26:117:99:0,175,2955 0/0:82,20:102:86.25:0,86,2728 0/1:108,31:139:11.19:11,0,3303 0/0:144,52:196:99:0,302,4533 0/0:114,39:154:59.03:0,59,3615 0/1:69,46:115:13.92:14,0,2185 0/0:129,59:188:46.15:0,46,4148 0/0:94,26:120:99:0,113,3098 0/0:100,32:132:99:0,159,3289 0/0:84,29:113:99:0,115,2816 0/1:54,34:89:11.43:11,0,1545 0/0:69,30:99:1.21:0,1,2002 0/1:44,32:77:5.08:5,0,1319 0/1:62,36:98:43.98:44,0,2017 0/0:47,20:67:99:0,115,1567 0/0:140,47:187:99:0,225,4403 0/0:63,29:92:1.13:0,1,1904 0/0:69,19:88:99:0,101,2244 0/0:65,23:88:99:0,104,2147 0/1:78,43:121:26.76:27,0,2351 0/1:119,43:163:50.68:51,0,3459 0/0:66,35:101:59.72:0,60,2195 0/0:71,25:96:62.30:0,62,2192 0/1:70,33:104:41.88:42,0,2083 0/0:71,25:97:99:0,132,2389 0/0:77,25:103:99:0,119,2570 1 28531815 . G A 813.94 . 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GCT G 875.72 . AC=17;AF=0.202;AN=84;BaseQRankSum=2.397;DP=2696;FS=2227.071;HRun=0;HaplotypeScore=208.4650;InbreedingCoeff=-0.2638;MQ=58.64;MQ0=0;MQRankSum=0.922;QD=0.63;ReadPosRankSum=-20.493 GT:AD:DP:GQ:PL 0/0:42,6:48:22.46:0,22,2260 0/0:59,0:59:69.58:0,70,2547 0/0:41,0:41:84.54:0,85,2127 0/1:142,0:142:99:120,0,5936 0/1:107,0:107:12.54:13,0,4839 0/1:94,0:90:99:125,0,3922 0/1:74,0:74:99:103,0,2915 0/0:79,0:76:27.43:0,27,3576 0/1:55,0:55:12.95:13,0,2655 0/0:43,0:43:96.50:0,97,2300 0/1:40,0:40:16.78:17,0,1812 0/0:43,0:43:24.12:0,24,2077 0/0:23,0:23:31.79:0,32,1166 0/0:46,0:46:99:0,131,2464 0/1:129,0:129:54.20:54,0,6011 0/0:50,0:50:57.60:0,58,2278 0/0:55,0:55:68.99:0,69,2702 0/0:40,0:40:95.78:0,96,2064 0/1:78,0:78:18.53:19,0,3561 0/0:108,0:108:40.80:0,41,4855 0/1:96,0:96:11.01:11,0,4507 0/1:65,0:65:38.31:38,0,2629 0/1:150,0:150:99:270,0,6364 0/1:67,0:67:75.23:75,0,2869 0/0:72,0:71:10.24:0,10,3138 0/1:69,0:68:34.21:34,0,2520 0/0:29,0:29:32.72:0,33,1269 0/0:33,0:33:93.32:0,93,1837 0/0:53,0:53:99:0,105,2721 0/0:48,0:48:10.13:0,10,2126 0/1:45,0:44:57.61:58,0,1700 0/0:94,0:94:50.57:0,51,4343 0/1:84,0:82:45.43:45,0,3440 0/0:38,0:38:18.16:0,18,1582 0/0:59,0:58:26.40:0,26,2696 0/1:44,0:44:15.77:16,0,1816 0/0:89,0:89:99:0,102,4501 0/0:51,0:51:99:0,110,2562 0/0:41,0:41:84.27:0,84,2143 0/0:41,0:41:22.26:0,22,1848 0/1:41,0:41:34.03:34,0,1879 0/0:33,0:33:2.54:1,0,1405 1 28598879 . C G 2344.63 . AC=26;AF=0.310;AN=84;BaseQRankSum=-21.470;DP=2696;Dels=0.00;FS=3090.388;HRun=1;HaplotypeScore=1.9703;InbreedingCoeff=-0.4375;MQ=58.64;MQ0=0;MQRankSum=-0.111;QD=1.29;ReadPosRankSum=-22.116 GT:AD:DP:GQ:PL 0/0:41,1:42:99:0,120,1498 0/1:45,14:59:99:109,0,1438 0/0:35,6:41:49.41:0,49,1239 0/1:106,36:142:99:289,0,3460 0/0:87,20:107:10.75:0,11,3119 0/1:71,23:94:99:138,0,2408 0/1:53,21:74:99:210,0,1802 0/0:63,16:79:32.81:0,33,2218 0/0:48,7:55:8.65:0,9,1635 0/0:41,2:43:93.23:0,93,1444 0/1:33,7:40:5.12:5,0,1000 0/1:37,6:43:29.90:30,0,1245 0/0:21,2:23:9:0,9,721 0/0:43,3:46:93.47:0,93,1468 0/1:106,23:129:58.70:59,0,3476 0/1:39,11:50:99:153,0,1333 0/0:50,5:55:23.01:0,23,1610 0/0:34,6:40:39.49:0,39,1105 0/0:66,12:78:9.44:0,9,2061 0/1:87,21:108:18.48:18,0,2773 0/1:81,15:96:8.22:8,0,2641 0/1:48,17:65:99:159,0,1536 0/1:111,39:150:99:312,0,3789 0/1:50,17:67:76.79:77,0,1752 0/1:56,16:72:29.84:30,0,1893 0/1:47,22:69:47.87:48,0,1543 0/1:22,7:29:58.97:59,0,740 0/0:32,1:33:93.29:0,93,1153 0/0:47,6:53:80.39:0,80,1648 0/1:38,10:48:63.03:63,0,1289 0/1:34,11:45:99:103,0,1002 0/1:77,17:94:4.43:4,0,2516 0/1:64,20:84:99:355,0,2082 0/1:30,8:38:37.61:38,0,964 0/1:50,7:58:6.47:6,0,1553 0/1:32,12:44:99:125,0,1083 0/0:80,9:89:99:0,111,2640 0/0:45,6:51:99:0,102,1564 0/0:37,4:41:50.49:0,50,1310 0/1:33,8:41:38.26:38,0,1052 0/1:33,8:41:64.32:64,0,1104 0/1:26,7:33:17.17:17,0,831 1 28598880 . T G 3.78 . 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G A 37283.09 . 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T G 927.27 . 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G A 7174.14 . 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A C 844.61 . 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G A 1014.16 . 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A G 1768.66 . 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C T 7660.59 . 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C A 11.02 . 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T C 15375.35 . 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G A 10949.21 . 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G A 250.35 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.160;DP=1328;Dels=0.00;FS=1.232;HRun=1;HaplotypeScore=1.4868;InbreedingCoeff=-0.0121;MQ=58.92;MQ0=0;MQRankSum=-0.402;QD=11.92;ReadPosRankSum=0.992 GT:AD:DP:GQ:PL 0/0:17,0:17:45.14:0,45,566 0/0:31,0:31:84.25:0,84,1054 0/1:9,12:21:99:297,0,275 0/0:53,0:53:99:0,138,1818 0/0:36,0:36:93.30:0,93,1243 0/0:36,0:36:87.28:0,87,1187 0/0:37,0:37:99:0,102,1360 0/0:33,0:33:90.29:0,90,1182 0/0:28,0:28:75.23:0,75,939 0/0:21,0:21:60.18:0,60,742 0/0:25,0:25:72.22:0,72,893 0/0:21,0:21:63.20:0,63,796 0/0:17,0:17:51.15:0,51,619 0/0:28,0:28:78.24:0,78,982 0/0:92,0:92:99:0,241,3001 0/0:26,0:26:69.21:0,69,855 0/0:24,0:24:72.20:0,72,866 0/0:21,0:21:57.18:0,57,709 0/0:48,0:48:99:0,123,1522 0/0:48,0:48:99:0,120,1520 0/0:53,0:53:99:0,141,1768 0/0:22,0:22:60.18:0,60,740 0/0:58,0:58:99:0,159,2113 0/0:45,0:45:99:0,117,1589 0/0:34,0:34:87.27:0,87,1156 0/0:35,0:35:90.29:0,90,1218 0/0:26,0:26:69.21:0,69,867 0/0:30,0:30:87.25:0,87,1050 0/0:14,0:14:42.13:0,42,529 0/0:36,0:36:99:0,102,1293 0/0:17,0:17:48.15:0,48,608 0/0:54,0:54:99:0,141,1793 0/0:39,0:39:99:0,114,1430 0/0:17,0:17:51.16:0,51,624 0/0:20,0:20:54.15:0,54,678 0/0:28,0:28:78.25:0,78,1001 0/0:30,0:30:75.22:0,75,922 0/0:26,0:26:75.22:0,75,924 0/0:22,0:22:60.16:0,60,743 0/0:18,0:18:48.15:0,48,593 0/0:18,0:18:54.16:0,54,655 0/0:22,0:23:66.19:0,66,806 1 32266077 . T C 112.84 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.317;DP=713;Dels=0.00;FS=1.737;HRun=1;HaplotypeScore=0.2976;InbreedingCoeff=-0.0136;MQ=58.77;MQ0=0;MQRankSum=-0.844;QD=9.40;ReadPosRankSum=-1.088 GT:AD:DP:GQ:PL 0/0:19,0:19:45.14:0,45,561 0/0:14,0:14:39.12:0,39,480 0/1:6,6:12:99:159,0,180 0/0:30,0:30:69.22:0,69,896 0/0:27,0:27:72.22:0,72,891 0/0:14,0:14:39.13:0,39,505 0/0:9,0:9:24.08:0,24,300 0/0:13,0:13:36.10:0,36,446 0/0:10,0:10:30.09:0,30,361 0/0:9,0:9:27.08:0,27,321 0/0:11,0:11:33.10:0,33,406 0/0:8,0:8:24.07:0,24,291 0/0:5,0:5:15.05:0,15,180 0/0:16,0:16:39.11:0,39,472 0/0:61,0:61:99:0,138,1749 0/0:12,0:12:30.10:0,30,384 0/0:16,0:16:45.14:0,45,560 0/0:9,0:9:24.07:0,24,294 0/0:17,0:17:45.14:0,45,557 0/0:36,0:36:84.26:0,84,1075 0/0:26,0:26:78.22:0,78,943 0/0:14,0:14:39.12:0,39,477 0/0:45,0:45:99:0,105,1356 0/0:23,0:23:54.15:0,54,679 0/0:21,0:21:60.19:0,60,752 0/0:16,0:16:45.13:0,45,546 0/0:6,0:6:18.05:0,18,207 0/0:16,0:16:42.13:0,42,507 0/0:13,0:13:36.11:0,36,431 0/0:13,0:13:36.11:0,36,442 0/0:10,0:10:27.08:0,27,322 0/0:27,0:27:63.20:0,63,801 0/0:4,0:4:12.04:0,12,141 0/0:12,0:12:30.08:0,30,365 0/0:15,0:15:39.11:0,39,468 0/0:17,0:17:51.16:0,51,616 0/0:22,0:22:60.18:0,60,727 0/0:13,0:13:33.10:0,33,408 0/0:13,0:13:36.11:0,36,442 0/0:15,0:15:45.14:0,45,547 0/0:13,0:13:36.11:0,36,437 0/0:11,0:11:33.10:0,33,407 1 32628859 . C T 312.23 . AC=16;AF=0.190;AN=84;BaseQRankSum=-14.263;DP=1152;Dels=0.00;FS=483.845;HRun=2;HaplotypeScore=0.5802;InbreedingCoeff=-0.2744;MQ=58.26;MQ0=0;MQRankSum=1.874;QD=0.68;ReadPosRankSum=-11.773 GT:AD:DP:GQ:PL 0/0:20,7:28:6.10:0,6,580 0/0:21,4:25:51.13:0,51,615 0/1:16,5:21:10.99:11,0,498 0/0:32,6:38:43.26:0,43,876 0/1:29,12:41:45.71:46,0,658 0/0:26,5:31:57.17:0,57,745 0/0:17,3:21:39.07:0,39,507 0/0:22,6:28:25.46:0,25,588 0/0:21,7:28:10.82:0,11,646 0/1:24,7:31:62.97:63,0,572 0/0:15,4:19:14.16:0,14,400 0/1:17,6:23:17.04:17,0,387 0/1:22,5:27:44.17:44,0,503 0/1:23,5:28:31.48:31,0,543 0/1:53,34:87:31.12:31,0,1372 0/0:13,2:16:36:0,36,419 0/1:20,8:28:19.86:20,0,455 0/0:15,5:20:1.95:2,0,396 0/0:31,8:39:17.37:0,17,841 0/0:26,5:31:63.19:0,63,789 0/1:18,6:24:7.01:7,0,446 0/0:15,3:18:3.58:0,4,370 0/0:34,8:42:47.58:0,48,948 0/1:9,4:14:27.29:27,0,214 0/0:26,7:33:60.19:0,60,804 0/0:22,8:30:2.85:0,0,500 0/0:14,5:19:7.46:0,7,391 0/0:17,2:19:17.53:0,18,505 0/1:10,3:13:5.55:6,0,242 0/0:14,7:21:36.11:0,36,444 0/0:14,4:18:3.48:0,3,351 0/1:22,11:33:32.77:33,0,588 0/0:22,6:28:8.28:0,8,589 0/0:24,9:33:9.88:0,10,669 0/0:22,8:30:41.16:0,41,468 0/0:20,13:33:10.68:0,11,611 0/1:15,7:22:46.98:47,0,413 0/1:19,5:24:11:11,0,489 0/1:17,7:24:38.54:39,0,431 0/0:17,4:21:10.78:0,11,476 0/1:11,8:19:28.07:28,0,298 0/0:18,6:24:28.46:0,28,589 1 32669540 . G A 440.87 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.083;DP=1530;Dels=0.00;FS=1.885;HRun=0;HaplotypeScore=1.1935;InbreedingCoeff=-0.0121;MQ=59.25;MQ0=0;MQRankSum=1.003;QD=14.22;ReadPosRankSum=0.523 GT:AD:DP:GQ:PL 0/0:32,0:32:84.15:0,84,902 0/0:37,0:37:93.20:0,93,1026 0/0:13,0:13:39.09:0,39,418 0/0:79,0:79:99:0,205,2503 0/0:55,2:57:99:0,115,1837 0/0:52,0:53:99:0,144,1748 0/0:42,0:42:99:0,111,1334 0/0:36,0:36:96.28:0,96,1173 0/0:29,0:29:81.23:0,81,961 0/1:14,17:31:99:487,0,335 0/0:30,0:30:81.17:0,81,897 0/0:27,0:27:72.12:0,72,786 0/0:16,0:16:42.09:0,42,465 0/0:30,0:30:78.23:0,78,933 0/0:79,0:79:99:0,220,2471 0/0:27,0:27:78.18:0,78,869 0/0:37,0:37:99:0,99,1071 0/0:36,0:37:93.16:0,93,1013 0/0:40,0:40:99:0,117,1352 0/0:65,0:65:99:0,180,1988 0/0:39,0:39:99:0,105,1161 0/0:41,0:41:99:0,102,1178 0/0:70,0:70:99:0,189,2250 0/0:33,0:33:96.26:0,96,1140 0/0:37,0:37:99:0,105,1293 0/0:44,0:44:99:0,120,1438 0/0:25,0:25:66.16:0,66,708 0/0:28,0:28:72.14:0,72,793 0/0:25,0:26:60.14:0,60,688 0/0:21,0:21:57.15:0,57,655 0/0:20,0:20:54.15:0,54,616 0/0:42,0:42:99:0,111,1309 0/0:38,0:38:99:0,102,1132 0/0:26,0:26:72.17:0,72,809 0/0:27,0:27:63.15:0,63,695 0/0:33,0:33:81.19:0,81,906 0/0:33,0:34:84.24:0,84,982 0/0:25,1:26:75.14:0,75,799 0/0:39,0:39:99:0,114,1243 0/0:29,0:29:78.17:0,78,868 0/0:32,0:32:81.21:0,81,924 0/0:23,0:23:66.18:0,66,761 1 32669645 . C T 1079.69 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.931;DP=2175;Dels=0.00;FS=1.228;HRun=2;HaplotypeScore=1.3957;InbreedingCoeff=-0.0244;MQ=58.93;MQ0=0;MQRankSum=-0.642;QD=12.41;ReadPosRankSum=1.433 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,111,1221 0/0:45,0:45:99:0,126,1432 0/0:39,0:39:99:0,114,1271 0/0:131,0:131:99:0,346,4317 0/0:88,0:88:99:0,244,2972 0/0:64,0:64:99:0,169,2087 0/0:41,0:41:99:0,108,1324 0/0:53,0:53:99:0,144,1770 0/0:40,0:40:99:0,102,1164 0/0:35,0:35:99:0,99,1142 0/0:44,0:44:99:0,114,1371 0/0:35,0:35:99:0,99,1130 0/0:31,1:32:43.49:0,43,765 0/0:42,0:42:99:0,123,1383 0/0:113,0:113:99:0,298,3472 0/0:48,0:48:99:0,132,1552 0/0:47,0:47:99:0,138,1560 0/0:39,1:40:80.33:0,80,1231 0/0:50,0:50:99:0,132,1522 0/0:72,0:72:99:0,193,2230 0/0:62,0:62:99:0,168,1928 0/0:53,0:53:99:0,144,1647 0/0:104,0:104:99:0,268,3352 0/0:42,0:42:99:0,117,1374 0/0:70,0:70:99:0,187,2298 0/0:61,0:61:99:0,156,1917 0/0:28,0:28:75.19:0,75,849 0/0:47,0:47:99:0,129,1448 0/0:39,0:39:99:0,111,1262 0/0:49,0:49:99:0,135,1592 0/0:39,0:39:99:0,102,1209 0/0:48,0:50:99:0,126,1520 0/0:41,0:41:99:0,117,1365 0/0:34,0:34:96.25:0,96,1082 0/0:50,0:50:99:0,141,1612 0/0:38,0:38:99:0,111,1279 0/0:47,0:47:99:0,129,1452 0/0:47,0:48:99:0,132,1477 0/0:46,0:46:99:0,129,1481 0/1:21,23:44:99:600,0,537 0/0:42,0:42:99:0,114,1278 0/1:24,19:43:99:542,0,683 1 32674703 . T G 10481.07 . AC=41;AF=0.488;AN=84;BaseQRankSum=-17.046;DP=2312;Dels=0.00;FS=3041.084;HRun=2;HaplotypeScore=2.0959;InbreedingCoeff=-0.9535;MQ=58.49;MQ0=2;MQRankSum=3.836;QD=4.61;ReadPosRankSum=-26.221 GT:AD:DP:GQ:PL 0/1:21,20:41:99:220,0,499 0/1:23,20:43:99:127,0,404 0/1:23,18:41:99:163,0,615 0/1:44,57:101:99:727,0,816 0/1:44,55:99:99:403,0,845 0/1:38,43:81:99:336,0,976 0/1:21,30:51:99:219,0,533 0/1:20,28:48:99:241,0,436 0/1:25,19:44:99:209,0,594 0/1:19,19:38:99:235,0,501 0/1:15,19:34:99:153,0,411 0/1:30,21:51:99:284,0,603 0/1:26,19:45:99:199,0,652 0/1:12,13:25:99:219,0,265 0/1:63,48:111:99:405,0,1572 0/1:20,15:35:57.49:57,0,525 0/1:22,22:44:99:199,0,551 0/1:19,19:38:99:205,0,471 0/1:25,37:63:99:557,0,525 0/1:72,54:126:99:175,0,1750 0/1:38,29:67:99:266,0,948 0/1:33,24:57:99:147,0,867 0/1:36,52:88:99:523,0,679 0/1:25,33:58:99:205,0,464 0/1:34,44:78:99:408,0,826 0/1:29,41:70:99:270,0,735 0/1:23,21:44:99:237,0,403 0/1:27,15:42:97.14:97,0,762 0/1:18,23:41:99:288,0,416 0/1:16,16:32:99:246,0,405 0/1:22,16:38:99:133,0,531 0/1:60,39:99:99:138,0,1614 0/1:32,24:56:99:251,0,844 0/1:24,14:38:99:144,0,581 0/1:18,19:37:99:280,0,339 0/1:19,17:36:99:224,0,458 0/1:33,34:67:99:348,0,654 0/1:20,25:45:99:226,0,498 0/1:22,17:39:99:214,0,514 0/1:23,19:42:99:216,0,545 0/1:19,21:40:99:285,0,479 0/0:24,13:38:32.78:0,33,615 1 32674706 . C G 60.01 . AC=4;AF=0.048;AN=84;BaseQRankSum=-8.752;DP=1963;Dels=0.00;FS=537.733;HRun=2;HaplotypeScore=2.1569;InbreedingCoeff=-0.0856;MQ=58.30;MQ0=2;MQRankSum=0.286;QD=0.52;ReadPosRankSum=-12.894 GT:AD:DP:GQ:PL 0/0:25,9:34:23.18:0,23,624 0/0:29,9:39:44.95:0,45,783 0/0:29,6:35:40.43:0,40,863 0/0:48,36:84:99:0,109,1578 0/0:55,23:78:99:0,135,1661 0/0:47,21:68:99:0,105,1281 0/0:28,13:41:69.19:0,69,834 0/0:24,11:37:51.16:0,51,650 0/0:27,10:37:33.54:0,34,681 0/0:25,8:33:5.98:0,6,659 0/0:21,6:27:24.28:0,24,518 0/0:31,14:45:15.39:0,15,950 0/0:24,13:37:35.50:0,35,656 0/1:14,9:24:40.66:41,0,403 0/0:71,26:98:99:0,188,2171 0/0:24,8:32:63.18:0,63,734 0/0:28,9:37:66.19:0,66,801 0/0:19,13:32:11.53:0,12,435 0/0:35,21:56:0.93:6,0,887 0/0:83,25:108:99:0,188,2457 0/0:47,10:57:67.21:0,67,1106 0/0:36,11:47:92.94:0,93,1088 0/0:39,31:70:72.01:0,72,1227 0/0:28,17:46:39.59:0,40,817 0/0:40,26:66:96.29:0,96,1200 0/0:39,20:59:93.24:0,93,1114 0/0:25,12:38:8.05:0,8,607 0/0:30,10:40:20.37:0,20,855 0/1:21,9:30:13.84:14,0,490 0/1:21,9:30:23.76:24,0,542 0/0:24,9:33:1.95:2,0,588 0/0:71,19:90:99:0,190,2256 0/0:35,12:47:62.03:0,62,1004 0/0:25,6:31:69.21:0,69,851 0/0:22,11:33:22.58:0,23,559 0/1:22,10:32:63.18:63,0,573 0/0:38,16:54:1.70:3,0,936 0/0:26,10:37:22.80:0,23,617 0/0:24,8:32:57.15:0,57,667 0/0:28,11:39:10.54:0,11,691 0/0:22,13:35:24.50:0,25,560 0/0:27,7:34:45.13:0,45,801 1 32674784 . A G 1079.49 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.273;DP=1605;Dels=0.00;FS=4.148;HRun=0;HaplotypeScore=1.3781;InbreedingCoeff=-0.0244;MQ=57.90;MQ0=0;MQRankSum=1.441;QD=16.61;ReadPosRankSum=0.962 GT:AD:DP:GQ:PL 0/0:31,0:31:90.26:0,90,1058 0/0:20,0:21:54.16:0,54,628 0/0:28,0:29:84.25:0,84,989 0/0:65,0:65:99:0,190,2238 0/0:51,0:51:99:0,153,1760 0/0:44,0:44:99:0,132,1544 0/0:33,0:33:90.20:0,90,1031 0/0:42,0:42:99:0,123,1439 0/0:31,0:31:90.22:0,90,1043 0/0:29,0:31:81.23:0,81,936 0/0:32,0:32:90.24:0,90,1050 0/0:29,0:29:78.22:0,78,909 0/0:23,0:23:69.18:0,69,784 0/0:32,0:32:93.27:0,93,1068 0/0:108,0:110:99:0,295,3434 0/0:33,0:36:96.22:0,96,1078 0/0:32,0:32:93.28:0,93,1098 0/0:30,0:30:90.25:0,90,1059 0/0:43,0:43:99:0,126,1529 0/0:72,0:72:99:0,205,2361 0/0:45,0:46:99:0,123,1427 0/0:22,0:22:63.18:0,63,732 0/0:56,0:56:99:0,165,1911 0/0:31,0:31:93.27:0,93,1087 0/0:41,0:41:99:0,114,1380 0/0:31,0:32:87.25:0,87,1023 0/0:30,0:31:87.25:0,87,1017 0/0:40,0:40:99:0,117,1372 0/0:33,0:33:96.29:0,96,1143 0/0:35,0:35:99:0,102,1217 0/0:25,0:25:72.19:0,72,848 0/0:52,0:53:99:0,147,1712 0/0:35,0:35:99:0,99,1160 0/0:32,0:32:90.24:0,90,1065 0/0:23,0:23:69.20:0,69,813 0/0:44,0:44:99:0,129,1515 0/0:51,0:52:99:0,144,1718 0/0:31,0:31:90.25:0,90,1042 0/0:36,0:36:99:0,102,1191 0/1:14,17:32:99:501,0,400 0/1:12,21:33:99:641,0,328 0/0:25,0:25:72.19:0,72,823 1 32678180 . A G 3151.75 . AC=3;AF=0.036;AN=84;BaseQRankSum=7.287;DP=2149;Dels=0.00;FS=9.953;HRun=2;HaplotypeScore=2.0128;InbreedingCoeff=-0.0370;MQ=59.19;MQ0=0;MQRankSum=1.464;QD=13.53;ReadPosRankSum=1.051 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,102,1247 0/0:40,0:40:99:0,114,1357 0/0:19,0:19:57.17:0,57,682 0/0:144,0:144:99:0,406,4990 0/1:53,60:113:99:1806,0,1589 0/0:93,0:93:99:0,268,3401 0/0:60,1:61:99:0,165,2054 0/0:75,0:75:99:0,220,2711 0/0:35,0:35:96.30:0,96,1185 0/0:31,0:31:87.27:0,87,1078 0/0:31,0:31:90.26:0,90,1082 0/0:41,0:41:99:0,120,1440 0/0:21,0:21:57.18:0,57,724 0/0:28,0:28:84.23:0,84,1009 0/0:109,0:109:99:0,298,3651 0/0:26,0:26:75.23:0,75,911 0/0:37,0:37:99:0,111,1323 0/0:32,0:32:93.29:0,93,1154 0/0:60,0:60:99:0,172,2121 0/0:87,0:87:99:0,241,2965 0/0:53,0:53:99:0,144,1803 0/0:47,0:47:99:0,132,1612 0/0:130,0:130:99:0,364,4504 0/1:30,21:51:99:617,0,918 0/1:42,27:69:99:804,0,1285 0/0:57,0:57:99:0,162,2000 0/0:30,0:30:90.27:0,90,1089 0/0:42,0:42:99:0,114,1396 0/0:27,0:27:75.21:0,75,879 0/0:43,0:43:99:0,126,1536 0/0:41,0:41:99:0,111,1357 0/0:81,0:81:99:0,223,2700 0/0:48,0:48:99:0,138,1636 0/0:25,0:25:66.19:0,66,790 0/0:23,0:23:66.21:0,66,825 0/0:41,0:41:99:0,117,1415 0/0:56,0:56:99:0,156,1920 0/0:33,0:33:93.28:0,93,1133 0/0:32,0:32:93.25:0,93,1105 0/0:33,0:33:93.28:0,93,1142 0/0:37,0:37:99:0,102,1237 0/0:31,0:31:87.25:0,87,1042 1 32846865 . C G 678.17 . AC=24;AF=0.286;AN=84;BaseQRankSum=-14.678;DP=1253;Dels=0.00;FS=443.992;HRun=2;HaplotypeScore=0.5732;InbreedingCoeff=-0.4049;MQ=58.38;MQ0=0;MQRankSum=-0.068;QD=0.93;ReadPosRankSum=-10.664 GT:AD:DP:GQ:PL 0/1:14,8:22:45.34:45,0,284 0/1:11,7:18:20.25:20,0,290 0/1:13,8:21:14.23:14,0,339 0/0:22,15:37:51.10:0,51,609 0/0:14,8:22:30.09:0,30,370 0/0:20,12:32:1.85:0,2,421 0/1:13,6:19:4.29:4,0,325 0/0:14,9:23:7.23:0,7,261 0/1:10,10:20:36.73:37,0,243 0/1:10,6:16:4.63:5,0,191 0/1:22,12:34:28.64:29,0,517 0/1:23,7:30:11.92:12,0,591 0/1:20,7:27:4.93:5,0,485 0/1:23,12:35:78.88:79,0,536 0/1:57,29:89:45.35:45,0,1232 0/0:19,5:24:39.10:0,39,469 0/1:21,18:39:14.56:15,0,568 0/0:14,10:25:9.43:0,9,394 0/1:19,15:34:99:127,0,273 0/0:30,11:41:34.38:0,34,554 0/1:35,11:46:27.32:27,0,623 0/0:21,14:35:22.89:0,23,488 0/1:7,14:21:87.09:87,0,134 0/0:17,6:23:9.42:0,9,381 0/0:11,9:20:30.04:0,30,353 0/1:12,11:23:28.17:28,0,315 0/0:18,2:21:36.09:0,36,417 0/1:14,11:25:13.18:13,0,413 0/1:19,11:30:11.24:11,0,365 0/1:21,10:31:3.14:3,0,508 0/0:18,8:26:1.77:3,0,461 0/0:36,13:49:16.88:0,17,706 0/0:17,10:27:39.09:0,39,469 0/0:19,6:25:22.56:0,23,553 0/1:19,14:33:32.88:33,0,410 0/1:13,5:19:22.23:22,0,274 0/1:17,18:35:94.48:94,0,268 0/1:17,15:32:24.78:25,0,306 0/0:24,11:35:27.46:0,27,578 0/1:20,11:31:59.87:60,0,417 0/0:18,7:25:45.13:0,45,529 0/0:22,11:33:8.77:0,9,569 1 33134865 . A C 3451.33 . AC=2;AF=0.024;AN=84;BaseQRankSum=13.736;DP=3413;Dels=0.00;FS=2.985;HRun=2;HaplotypeScore=5.9994;InbreedingCoeff=-0.0244;MQ=58.64;MQ0=0;MQRankSum=6.180;QD=18.07;ReadPosRankSum=-0.065 GT:AD:DP:GQ:PL 0/0:81,0:81:99:0,217,2646 0/0:61,0:61:99:0,168,2010 0/0:71,0:71:99:0,190,2326 0/0:96,0:96:99:0,274,3344 0/0:109,0:109:99:0,322,3999 0/1:46,54:100:99:1862,0,1271 0/0:75,0:75:99:0,226,2785 0/1:40,50:91:99:1590,0,1138 0/0:76,0:76:99:0,211,2544 0/0:73,0:73:99:0,211,2555 0/0:58,0:58:99:0,162,1980 0/0:66,0:66:99:0,190,2319 0/0:60,0:60:99:0,162,1998 0/0:64,0:64:99:0,181,2185 0/0:247,0:247:99:0,620,7702 0/0:41,0:41:99:0,114,1370 0/0:76,0:76:99:0,193,2388 0/0:77,0:77:99:0,220,2666 0/0:89,0:89:99:0,235,2868 0/0:90,0:90:99:0,253,3084 0/0:93,0:93:99:0,244,3039 0/0:55,0:55:99:0,147,1789 0/0:119,0:121:99:0,349,4287 0/0:122,0:122:99:0,361,4458 0/0:100,0:100:99:0,286,3541 0/0:105,0:105:99:0,304,3767 0/0:50,0:50:99:0,141,1737 0/0:70,0:71:99:0,202,2446 0/0:53,0:53:99:0,153,1881 0/0:75,0:75:99:0,205,2500 0/0:72,0:72:99:0,199,2453 0/0:76,0:76:99:0,208,2587 0/0:58,0:58:99:0,165,1968 0/0:76,0:76:99:0,214,2642 0/0:62,0:62:99:0,166,2033 0/0:80,0:80:99:0,229,2770 0/0:69,0:69:99:0,184,2274 0/0:73,1:74:99:0,211,2523 0/0:56,0:56:99:0,169,2041 0/0:92,0:92:99:0,250,3010 0/0:75,0:75:99:0,223,2672 0/0:77,0:77:99:0,214,2635 1 33134925 . T C 713.93 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.426;DP=4353;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.2881;InbreedingCoeff=-0.0120;MQ=59.02;MQ0=6;MQRankSum=2.208;QD=9.04;ReadPosRankSum=-1.186 GT:AD:DP:GQ:PL 0/0:74,0:74:99:0,199,2444 0/0:83,0:83:99:0,229,2762 0/1:48,31:79:99:760,0,1352 0/0:158,0:158:99:0,400,5009 0/0:155,0:155:99:0,397,5019 0/0:168,0:168:99:0,418,5358 0/0:141,0:141:99:0,352,4483 0/0:169,0:171:99:0,424,5350 0/0:82,0:82:99:0,208,2590 0/0:92,0:92:99:0,244,2953 0/0:83,0:84:99:0,223,2742 0/0:91,0:91:99:0,241,2908 0/0:74,0:74:99:0,193,2346 0/0:80,0:80:99:0,202,2489 0/0:244,0:244:99:0,629,7677 0/0:71,0:71:99:0,193,2327 0/0:78,0:78:99:0,211,2579 0/0:80,0:80:99:0,223,2673 0/0:88,0:89:99:0,226,2753 0/0:122,0:123:99:0,310,3810 0/0:118,0:119:99:0,313,3768 0/0:63,0:63:99:0,162,2007 0/0:198,0:198:99:0,497,6248 0/0:172,0:172:99:0,442,5599 0/0:163,0:163:99:0,418,5256 0/0:132,0:132:99:0,331,4192 0/0:59,1:60:99:0,162,1969 0/0:104,0:104:99:0,280,3381 0/0:57,0:57:99:0,165,2001 0/0:73,0:73:99:0,175,2172 0/0:79,0:79:99:0,220,2668 0/0:90,0:90:99:0,235,2909 0/0:75,0:75:99:0,184,2293 0/0:86,0:86:99:0,241,2932 0/0:63,0:63:99:0,172,2081 0/0:92,0:93:99:0,262,3188 0/0:84,0:84:99:0,220,2680 0/0:85,0:85:99:0,226,2788 0/0:79,0:79:99:0,220,2643 0/0:93,0:93:99:0,235,2871 0/0:82,0:82:99:0,226,2741 0/0:86,0:86:99:0,229,2814 1 33235324 . C T 365.93 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.421;DP=1045;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.6880;InbreedingCoeff=-0.0250;MQ=58.39;MQ0=0;MQRankSum=1.292;QD=11.09;ReadPosRankSum=1.525 GT:AD:DP:GQ:PL 0/0:23,0:23:60.15:0,60,694 0/0:20,0:20:51.15:0,51,613 0/0:15,0:15:42.12:0,42,506 0/0:48,0:48:99:0,120,1573 0/0:53,1:54:99:0,147,1889 0/0:37,0:37:96.27:0,96,1221 0/0:53,0:53:99:0,132,1746 0/0:37,0:37:99:0,99,1269 0/0:10,0:10:30.09:0,30,358 0/0:22,0:22:57.13:0,57,660 0/0:18,0:18:45.13:0,45,542 0/0:11,0:11:30.07:0,30,350 0/0:7,0:7:21.04:0,21,232 0/0:13,0:13:36.09:0,36,425 0/0:62,0:62:99:0,153,1804 0/0:14,0:14:42.11:0,42,482 0/0:13,0:13:30.09:0,30,382 0/0:15,0:15:39.09:0,39,451 0/0:23,0:24:66.18:0,66,756 0/0:35,0:35:81.20:0,81,973 0/0:24,0:24:54.15:0,54,655 0/0:18,0:18:48.14:0,48,579 0/0:72,0:72:99:0,169,2211 0/0:36,0:37:96.29:0,96,1237 0/0:48,0:49:99:0,123,1602 0/0:46,0:46:99:0,105,1385 0/0:5,0:5:15.04:0,15,168 0/0:17,0:17:51.11:0,51,563 0/0:18,0:18:48.10:0,48,562 0/1:9,6:15:99:171,0,279 0/0:13,0:13:30.09:0,30,374 0/0:34,0:35:96.26:0,96,1119 0/1:9,9:18:99:258,0,251 0/0:19,0:19:48.11:0,48,563 0/0:14,0:14:39.10:0,39,458 0/0:18,0:18:51.15:0,51,601 0/0:31,0:31:87.25:0,87,1040 0/0:13,0:13:36.10:0,36,418 0/0:9,0:9:27.08:0,27,321 0/0:13,0:13:36.10:0,36,416 0/0:14,0:14:39.09:0,39,460 0/0:16,0:16:39.12:0,39,485 1 33248032 . C T 3893.68 . AC=4;AF=0.048;AN=84;BaseQRankSum=2.482;DP=4472;DS;Dels=0.00;FS=5.477;HRun=0;HaplotypeScore=3.1978;InbreedingCoeff=-0.0500;MQ=59.52;MQ0=0;MQRankSum=-0.137;QD=14.26;ReadPosRankSum=0.341 GT:AD:DP:GQ:PL 0/0:81,0:81:99:0,223,2536 0/1:40,39:79:99:1029,0,1112 0/1:30,25:55:99:695,0,811 0/0:208,0:208:99:0,572,6960 0/0:211,0:211:99:0,560,6920 0/0:196,1:197:99:0,498,6528 0/0:188,0:188:99:0,506,6331 0/0:201,0:201:99:0,520,6350 0/0:77,0:77:99:0,205,2369 0/0:73,0:73:99:0,211,2349 0/0:64,0:64:99:0,183,2034 0/0:71,0:71:99:0,211,2369 0/0:47,0:47:99:0,126,1441 0/0:80,0:80:99:0,223,2609 0/0:200,0:200:99:0,520,5912 0/0:52,0:52:99:0,147,1677 0/0:66,0:66:99:0,183,2091 0/0:74,0:74:99:0,208,2398 0/0:123,0:123:99:0,331,3743 0/0:107,0:108:99:0,289,3362 0/0:133,0:135:99:0,367,4177 0/0:65,0:66:99:0,183,2074 0/0:199,2:201:99:0,512,6743 0/0:187,0:187:99:0,460,5846 0/0:189,0:190:99:0,502,6223 0/0:188,0:189:99:0,496,6136 0/0:59,0:59:99:0,165,1874 0/0:76,0:76:99:0,205,2307 0/0:62,0:62:99:0,183,2062 0/0:85,0:85:99:0,220,2493 0/0:64,0:64:99:0,177,2003 0/0:134,0:135:99:0,355,4129 0/0:54,0:54:99:0,150,1715 0/0:68,0:68:99:0,192,2174 0/0:74,0:74:99:0,205,2348 0/0:76,0:77:99:0,199,2265 0/0:112,0:114:99:0,301,3448 0/0:83,0:83:99:0,238,2680 0/0:79,0:79:99:0,220,2448 0/1:36,42:78:99:1191,0,991 0/1:28,33:61:99:978,0,716 0/0:80,0:80:99:0,235,2677 1 33282806 . T A 2810.17 . AC=2;AF=0.024;AN=84;BaseQRankSum=9.568;DP=4808;DS;Dels=0.00;FS=1.739;HRun=2;HaplotypeScore=4.4946;InbreedingCoeff=-0.0244;MQ=59.39;MQ0=0;MQRankSum=-0.061;QD=13.01;ReadPosRankSum=-1.521 GT:AD:DP:GQ:PL 0/0:95,0:95:99:0,241,2898 0/0:85,0:85:99:0,223,2623 0/0:85,0:85:99:0,238,2812 0/0:218,0:218:99:0,557,6691 0/0:201,0:201:99:0,536,6426 0/0:188,0:188:99:0,466,5854 0/0:159,0:159:99:0,418,5047 0/0:149,0:149:99:0,382,4624 0/0:86,0:86:99:0,229,2683 0/0:94,0:94:99:0,238,2796 0/0:86,0:86:99:0,235,2732 0/0:69,0:69:99:0,193,2291 0/0:101,0:101:99:0,280,3269 0/0:99,0:99:99:0,280,3306 0/0:216,1:217:99:0,548,6544 0/0:72,0:72:99:0,205,2382 0/0:99,0:99:99:0,262,3139 0/1:54,40:95:99:1032,0,1413 0/1:55,66:121:99:1841,0,1466 0/0:180,0:180:99:0,427,5290 0/0:150,0:150:99:0,400,4810 0/0:104,0:104:99:0,277,3257 0/0:201,0:201:99:0,539,6411 0/0:114,0:114:99:0,289,3480 0/0:162,0:162:99:0,406,4943 0/0:136,0:136:99:0,340,4141 0/0:83,0:83:99:0,217,2612 0/0:92,0:93:99:0,244,2945 0/0:63,0:63:99:0,159,1903 0/0:67,0:67:99:0,187,2142 0/0:83,0:84:99:0,226,2647 0/0:172,0:173:99:0,421,5170 0/0:125,0:126:99:0,340,3982 0/0:72,0:73:99:0,193,2312 0/0:77,0:77:99:0,208,2479 0/0:84,0:85:99:0,223,2657 0/0:134,0:134:99:0,352,4192 0/0:84,0:84:99:0,220,2626 0/0:73,0:73:99:0,193,2280 0/0:72,0:72:99:0,187,2264 0/0:64,0:65:99:0,180,2087 0/0:90,0:90:99:0,247,2952 1 33409693 . G A 11294.21 . AC=25;AF=0.298;AN=84;BaseQRankSum=-10.717;DP=1663;Dels=0.00;FS=2.292;HRun=0;HaplotypeScore=0.7372;InbreedingCoeff=-0.3098;MQ=59.37;MQ0=0;MQRankSum=0.401;QD=13.41;ReadPosRankSum=5.921 GT:AD:DP:GQ:PL 0/0:28,0:28:78.23:0,78,941 0/1:15,9:24:99:221,0,412 1/1:1,33:35:57.74:957,58,0 0/1:33,36:69:99:950,0,942 0/0:73,0:73:99:0,205,2676 0/0:59,0:59:99:0,150,1863 0/0:48,0:48:99:0,132,1673 0/0:57,0:57:99:0,159,2004 0/0:27,0:27:75.15:0,75,820 0/0:30,0:30:78.20:0,78,919 0/0:26,0:26:69.20:0,69,836 0/1:16,11:28:99:274,0,378 0/1:17,12:29:99:319,0,451 0/1:8,21:30:99:605,0,183 0/0:105,0:107:99:0,268,3065 0/0:30,0:30:81.23:0,81,968 0/1:19,20:39:99:578,0,518 0/0:40,0:40:99:0,117,1355 0/1:10,17:28:99:498,0,188 0/1:25,12:40:99:318,0,609 0/0:43,0:43:99:0,105,1220 0/1:11,13:24:99:255,0,265 0/1:44,44:90:99:1151,0,1306 0/0:64,0:64:99:0,187,2314 0/0:67,0:68:99:0,187,2339 0/1:26,31:57:99:814,0,676 0/1:9,9:18:99:209,0,242 0/0:40,0:40:99:0,108,1247 0/1:17,9:26:99:232,0,428 0/1:13,20:33:99:522,0,330 0/0:36,0:36:99:0,102,1206 0/0:24,0:24:69.16:0,69,766 0/1:11,10:22:99:251,0,316 0/1:18,15:33:99:408,0,521 0/1:15,11:26:99:238,0,457 0/1:12,16:29:99:371,0,343 0/1:16,14:30:99:325,0,368 0/1:12,15:27:99:361,0,283 0/0:21,0:21:57.11:0,57,619 0/1:20,26:47:99:665,0,570 0/1:13,18:32:99:478,0,363 0/1:14,12:26:99:294,0,338 1 33478900 . T A 508.81 . 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G A 5559.52 . 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G C 9721.39 . 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C G 10616.21 . 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G A 5386.11 . 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C G 80.27 . AC=6;AF=0.071;AN=84;BaseQRankSum=-7.557;DP=976;Dels=0.00;FS=159.108;HRun=0;HaplotypeScore=0.2774;InbreedingCoeff=-0.0943;MQ=57.73;MQ0=1;MQRankSum=-9.688;QD=0.69;ReadPosRankSum=-9.702 GT:AD:DP:GQ:PL 0/0:22,0:22:66.21:0,66,840 0/0:15,1:16:22.46:0,22,549 0/0:12,0:12:33.11:0,33,429 0/0:33,0:33:96.31:0,96,1284 0/0:35,1:36:86.66:0,87,1413 0/0:36,2:38:57.04:0,57,1338 0/0:24,1:25:42.61:0,43,921 0/0:25,0:25:72.24:0,72,995 0/0:16,1:17:21.53:0,22,582 0/0:12,0:12:36.11:0,36,453 0/1:14,2:16:18.45:18,0,492 0/0:24,0:24:66.21:0,66,852 0/1:15,3:18:44.23:44,0,474 0/0:21,1:22:27.63:0,28,755 0/0:48,1:50:99:0,112,1757 0/0:27,0:27:75.24:0,75,973 0/1:15,3:18:29.78:30,0,491 0/0:23,2:25:3.95:0,4,705 0/0:16,0:16:45.14:0,45,568 0/0:31,1:32:63.67:0,64,1117 0/0:28,0:28:78.25:0,78,1006 0/0:18,1:19:18.53:0,19,562 0/0:30,0:30:87.29:0,87,1200 0/0:26,0:26:75.25:0,75,1027 0/0:22,1:23:25.41:0,25,777 0/0:22,0:22:63.19:0,63,820 0/0:18,0:18:51.17:0,51,662 0/1:18,2:20:15.94:16,0,596 0/0:19,1:20:22.83:0,23,663 0/0:18,1:19:21.05:0,21,655 0/0:23,0:23:66.21:0,66,851 0/0:39,1:40:95.68:0,96,1433 0/0:16,0:16:39.13:0,39,524 0/0:15,0:15:36.12:0,36,468 0/0:15,0:15:42.13:0,42,539 0/1:16,3:19:18.40:18,0,524 0/1:21,4:26:53.81:54,0,675 0/0:19,1:20:24.55:0,25,626 0/0:28,0:28:84.27:0,84,1067 0/0:17,2:19:0.53:9,0,559 0/0:25,2:27:11.05:0,11,797 0/0:19,0:19:57.18:0,57,726 1 33487269 . C T 1361.32 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.430;DP=2961;Dels=0.00;FS=2.525;HRun=2;HaplotypeScore=1.0920;InbreedingCoeff=-0.0244;MQ=42.34;MQ0=248;MQRankSum=-1.063;QD=12.15;ReadPosRankSum=-2.057 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,111,1369 0/0:62,0:62:99:0,165,2014 0/0:68,0:68:99:0,163,2048 0/0:110,0:110:99:0,268,3500 0/0:101,0:101:99:0,259,3405 0/0:84,0:84:99:0,193,2597 0/0:91,0:91:99:0,217,2826 0/0:90,0:92:99:0,208,2737 0/1:29,29:58:99:713,0,724 0/0:44,0:44:99:0,102,1256 0/1:27,27:54:99:710,0,490 0/0:60,0:60:99:0,153,1927 0/0:49,0:49:99:0,123,1508 0/0:59,0:59:99:0,159,2015 0/0:194,0:194:99:0,430,5428 0/0:48,0:48:99:0,123,1545 0/0:78,0:78:99:0,166,2100 0/0:70,0:70:99:0,178,2183 0/0:93,0:93:99:0,220,2726 0/0:72,0:72:99:0,175,2213 0/0:96,0:96:99:0,205,2574 0/0:39,0:39:90.28:0,90,1149 0/0:124,0:124:99:0,301,3956 0/0:86,0:86:99:0,220,2891 0/0:101,0:101:99:0,250,3201 0/0:102,0:102:99:0,247,3189 0/0:47,0:47:99:0,114,1418 0/0:52,0:53:99:0,135,1695 0/0:39,0:39:99:0,99,1222 0/0:50,0:50:99:0,126,1555 0/0:45,0:45:99:0,111,1386 0/0:88,0:88:99:0,208,2636 0/0:50,0:50:99:0,132,1632 0/0:46,0:46:99:0,129,1552 0/0:53,0:53:99:0,129,1624 0/0:70,0:70:99:0,181,2275 0/0:76,0:76:99:0,193,2383 0/0:49,0:49:99:0,111,1355 0/0:55,0:55:99:0,138,1734 0/0:58,0:58:99:0,144,1798 0/0:48,0:48:99:0,114,1424 0/0:56,0:56:99:0,129,1591 1 33557682 . T C 18.01 . AC=1;AF=0.012;AN=84;BaseQRankSum=-20.134;DP=3853;DS;Dels=0.00;FS=1235.588;HRun=3;HaplotypeScore=1.8511;InbreedingCoeff=-0.0293;MQ=59.26;MQ0=0;MQRankSum=1.469;QD=0.23;ReadPosRankSum=-17.457 GT:AD:DP:GQ:PL 0/0:64,24:88:67.07:0,67,1837 0/0:51,15:66:78.60:0,79,1519 0/0:48,17:65:99:0,113,1526 0/0:97,44:141:99:0,106,2753 0/0:73,37:110:99:0,113,2214 0/0:57,26:83:99:0,124,1808 0/0:66,26:92:99:0,155,2065 0/0:63,18:82:99:0,174,2047 0/0:64,22:86:99:0,114,1927 0/0:58,14:72:86.28:0,86,1787 0/0:47,19:66:99:0,111,1438 0/0:46,18:64:39.66:0,40,1321 0/0:46,22:68:99:0,120,1397 0/0:56,16:73:78.59:0,79,1764 0/0:181,68:249:99:0,402,5706 0/0:55,17:72:99:0,153,1769 0/1:52,27:79:63.46:63,0,1464 0/0:60,20:80:2.69:1,0,1590 0/0:97,25:122:99:0,173,3129 0/0:123,28:154:99:0,289,3621 0/0:83,28:112:99:0,168,2583 0/0:64,19:83:99:0,137,1843 0/0:103,32:135:99:0,252,3218 0/0:63,27:92:99:0,130,1840 0/0:74,23:97:99:0,132,2017 0/0:52,26:78:73.04:0,73,1496 0/0:52,15:67:99:0,113,1587 0/0:56,15:71:99:0,141,1608 0/0:57,17:74:0.70:8,0,1663 0/0:60,19:79:99:0,141,1888 0/0:51,19:70:81.64:0,82,1550 0/0:106,24:131:99:0,239,3016 0/0:71,15:86:99:0,128,1943 0/0:77,19:96:99:0,219,2532 0/0:50,20:71:99:0,110,1589 0/0:61,17:78:60.86:0,61,1871 0/0:79,24:103:99:0,165,2524 0/0:65,13:78:99:0,156,1988 0/0:69,21:90:99:0,165,2158 0/0:62,26:88:50.27:0,50,1823 0/0:54,26:80:32.79:0,33,1678 0/0:58,23:81:99:0,105,1724 1 33583668 . T TG 138.45 . AC=6;AF=0.071;AN=84;BaseQRankSum=12.105;DP=1547;FS=340.598;HRun=5;HaplotypeScore=113.6345;InbreedingCoeff=-0.1137;MQ=57.58;MQ0=0;MQRankSum=0.516;QD=0.56;ReadPosRankSum=-14.621 GT:AD:DP:GQ:PL 0/0:31,0:30:40.41:0,40,647 0/1:24,2:26:19.57:20,0,430 0/0:20,0:20:51.02:0,51,532 0/1:75,13:88:99:148,0,1472 0/0:70,2:72:52.38:0,52,1394 0/0:43,7:50:48.61:0,49,1013 0/0:29,11:39:2.54:1,0,501 0/0:49,0:50:0.87:0,1,995 0/1:30,1:31:23.49:23,0,667 0/0:28,1:29:38.41:0,38,730 0/0:16,1:17:6.26:0,6,352 0/0:26,0:26:63.16:0,63,677 0/0:21,1:23:39.66:0,40,502 0/1:22,3:25:16.62:17,0,426 0/0:79,3:82:99:0,176,1977 0/1:35,1:36:6.01:6,0,703 0/0:28,0:28:66.24:0,66,732 0/0:19,1:20:34.41:0,34,499 0/0:44,0:44:84.05:0,84,873 0/0:60,3:63:90.81:0,91,1372 0/0:47,1:48:77.27:0,77,1107 0/0:28,3:31:13.75:0,14,600 0/0:68,1:69:85.05:0,85,1522 0/1:35,6:39:29.97:30,0,702 0/0:52,4:56:35.58:0,36,1295 0/0:45,1:46:26.56:0,27,1006 0/0:20,0:20:57.12:0,57,595 0/0:31,0:31:60.14:0,60,645 0/0:30,0:30:2.76:1,0,569 0/0:27,1:28:62.59:0,63,617 0/0:28,0:28:31.28:0,31,611 0/0:47,0:47:79.59:0,80,972 0/0:32,1:33:26.95:0,27,762 0/0:22,2:24:4.23:0,4,463 0/0:22,0:22:1.16:5,0,459 0/0:28,0:28:47.04:0,47,739 0/0:32,0:32:83.64:0,84,856 0/0:35,0:35:33.48:0,33,783 0/0:30,0:30:36.28:0,36,589 0/0:20,1:21:37.77:0,38,502 0/0:20,2:22:45.06:0,45,530 0/0:23,0:23:42.33:0,42,558 1 33583673 . G GC 46.50 . AC=2;AF=0.024;AN=84;BaseQRankSum=12.218;DP=1475;FS=291.814;HRun=0;HaplotypeScore=109.2851;InbreedingCoeff=-0.0484;MQ=57.44;MQ0=0;MQRankSum=0.935;QD=0.43;ReadPosRankSum=-3.706 GT:AD:DP:GQ:PL 0/0:28,0:27:58.84:0,59,909 0/0:23,0:23:8.85:0,9,616 0/0:20,0:20:51.16:0,51,690 0/1:75,4:79:95.77:96,0,1968 0/0:73,2:75:99:0,100,1960 0/0:49,0:49:73.33:0,73,1369 0/0:37,1:37:50.17:0,50,806 0/0:45,3:50:34.21:0,34,1388 0/1:27,1:28:18.56:19,0,888 0/0:27,1:28:42.31:0,42,976 0/0:16,0:16:22.96:0,23,503 0/0:25,0:25:63.21:0,63,878 0/0:22,0:22:52.08:0,52,686 0/0:23,0:23:0.51:9,0,574 0/0:77,1:78:99:0,193,2698 0/0:30,1:31:14.23:0,14,957 0/0:26,0:26:69.19:0,69,949 0/0:18,0:18:36.19:0,36,655 0/0:35,0:35:86.27:0,86,1136 0/0:61,0:61:99:0,120,1932 0/0:47,0:47:66.22:0,66,1458 0/0:27,1:28:21.30:0,21,803 0/0:67,0:67:99:0,109,2025 0/0:37,1:36:1.93:3,0,976 0/0:62,0:61:90.70:0,91,1856 0/0:47,0:47:43.28:0,43,1324 0/0:21,1:22:58.06:0,58,772 0/0:28,0:28:65.95:0,66,867 0/0:26,1:27:6.95:0,7,760 0/0:24,0:24:62.92:0,63,793 0/0:25,1:26:34.61:0,35,812 0/0:41,0:41:90.66:0,91,1316 0/0:33,0:33:54.67:0,55,1055 0/0:23,0:23:33.75:0,34,658 0/0:19,1:22:15.33:0,15,655 0/0:30,0:30:65.32:0,65,1012 0/0:30,0:30:84.12:0,84,1117 0/0:30,0:30:36.51:0,37,1056 0/0:28,1:29:46.45:0,46,784 0/0:20,0:20:54.03:0,54,704 0/0:22,0:22:50.65:0,51,720 0/0:25,0:25:51.26:0,51,766 1 33583674 . A AC 105.39 . AC=4;AF=0.048;AN=84;BaseQRankSum=13.063;DP=1480;FS=405.530;HRun=3;HaplotypeScore=114.0034;InbreedingCoeff=-0.0786;MQ=57.32;MQ0=0;MQRankSum=-0.725;QD=0.62;ReadPosRankSum=-5.638 GT:AD:DP:GQ:PL 0/0:26,3:28:59.23:0,59,809 0/0:25,0:25:5.31:0,5,427 0/0:20,0:20:39.11:0,39,458 0/1:79,0:79:99:127,0,1572 0/0:73,1:74:33.05:0,33,1382 0/0:48,0:48:60.62:0,61,1000 0/0:40,0:39:35.46:0,35,726 0/0:49,0:49:14.64:0,15,978 0/1:28,0:28:23.67:24,0,714 0/0:29,0:29:32.52:0,33,780 0/0:15,1:16:0.43:0,0,399 0/0:25,0:25:54.16:0,54,648 0/0:21,0:21:51.05:0,51,581 0/0:23,0:23:1.09:0,1,464 0/0:80,0:80:99:0,170,2149 0/0:31,0:31:1.49:4,0,689 0/0:26,0:26:58.38:0,58,730 0/0:18,0:18:32.64:0,33,453 0/0:32,1:33:80.96:0,81,927 0/0:61,0:61:78.22:0,78,1476 0/0:48,0:48:72.79:0,73,1077 0/0:29,0:29:19.80:0,20,603 0/0:69,0:69:70.68:0,71,1605 0/1:38,0:35:23.23:23,0,713 0/0:62,0:61:70.11:0,70,1606 0/0:48,0:48:7.87:0,8,947 0/0:22,0:22:30.58:0,31,542 0/0:27,0:28:56.75:0,57,653 0/1:26,0:26:24.52:25,0,630 0/0:21,0:21:54.09:0,54,621 0/0:26,0:26:19.02:0,19,604 0/0:37,1:38:64.81:0,65,1040 0/0:33,0:33:33.04:0,33,767 0/0:23,0:23:11.12:0,11,464 0/0:23,0:23:23.73:0,24,561 0/0:31,0:31:67.92:0,68,899 0/0:29,0:29:69.16:0,69,795 0/0:32,0:32:25.33:0,25,805 0/0:30,0:30:22.60:0,23,562 0/0:20,0:20:46.27:0,46,558 0/0:23,0:23:45.03:0,45,579 0/0:26,0:26:33.39:0,33,650 1 33836164 . G A 807.78 . AC=3;AF=0.036;AN=84;BaseQRankSum=-6.841;DP=993;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5635;InbreedingCoeff=-0.0370;MQ=58.76;MQ0=0;MQRankSum=0.677;QD=15.53;ReadPosRankSum=1.137 GT:AD:DP:GQ:PL 0/0:19,0:19:54.15:0,54,646 0/0:15,0:15:42.14:0,42,541 0/0:20,0:21:57.18:0,57,715 0/0:44,0:44:99:0,120,1586 0/0:35,0:35:96.31:0,96,1294 0/0:22,0:22:63.21:0,63,846 0/0:23,0:23:63.18:0,63,829 0/0:25,0:25:69.22:0,69,917 0/0:30,0:30:81.25:0,81,1024 0/0:18,0:18:54.17:0,54,678 0/1:12,10:22:99:249,0,393 0/0:22,0:22:63.18:0,63,777 0/0:16,0:16:48.15:0,48,599 0/0:12,0:12:33.11:0,33,423 0/0:72,0:72:99:0,193,2394 0/0:25,0:25:75.23:0,75,917 0/0:14,0:14:42.12:0,42,514 0/0:16,0:16:45.14:0,45,573 0/0:32,0:33:90.24:0,90,1082 0/0:36,0:36:99:0,102,1307 0/0:25,0:25:69.21:0,69,846 0/0:32,0:32:87.28:0,87,1103 0/0:35,0:35:99:0,99,1320 0/0:26,0:26:75.23:0,75,994 0/0:21,0:21:63.20:0,63,831 0/0:23,0:23:63.20:0,63,836 0/0:15,0:15:39.12:0,39,497 0/0:20,0:20:57.18:0,57,708 0/0:19,0:19:54.17:0,54,683 0/0:21,0:21:60.19:0,60,756 0/0:14,0:14:42.13:0,42,529 0/0:30,0:30:84.27:0,84,1076 0/0:30,0:30:81.26:0,81,1029 0/1:6,12:18:99:352,0,181 0/1:3,9:12:74.70:282,0,75 0/0:13,0:13:39.12:0,39,487 0/0:25,0:26:72.20:0,72,885 0/0:21,0:21:60.18:0,60,731 0/0:17,0:17:51.14:0,51,623 0/0:16,0:16:48.15:0,48,594 0/0:18,0:18:54.17:0,54,678 0/0:21,0:21:60.19:0,60,753 1 34011665 . C G 176.69 . AC=7;AF=0.083;AN=84;BaseQRankSum=-10.462;DP=1889;Dels=0.00;FS=640.821;HRun=1;HaplotypeScore=1.6518;InbreedingCoeff=-0.1046;MQ=57.45;MQ0=0;MQRankSum=0.118;QD=0.57;ReadPosRankSum=-12.630 GT:AD:DP:GQ:PL 0/0:22,4:26:54.14:0,54,633 0/0:31,6:37:41.75:0,42,801 0/0:25,12:37:8.58:0,9,622 0/0:46,35:81:22.22:0,22,1274 0/1:44,43:87:61.60:62,0,1337 0/0:35,13:49:28.31:0,28,1013 0/1:27,21:48:31.84:32,0,622 0/0:29,20:49:72.99:0,73,900 0/0:20,12:32:27.92:0,28,657 0/0:23,11:34:40.48:0,40,674 0/0:27,14:41:48.03:0,48,811 0/0:21,14:35:56.95:0,57,649 0/0:15,6:21:36.07:0,36,407 0/0:23,3:26:57.17:0,57,685 0/0:69,34:105:72.93:0,73,1966 0/0:24,14:38:19.72:0,20,600 0/1:24,8:33:7.82:8,0,522 0/1:15,11:26:58.17:58,0,336 0/0:53,19:73:40.54:0,41,1472 0/0:62,12:75:84.22:0,84,1538 0/0:44,19:64:2.44:1,0,1217 0/0:36,24:60:60.99:0,61,1020 0/0:53,33:86:73.36:0,73,1662 0/0:26,18:44:2.19:0,2,654 0/0:33,13:46:20.38:0,20,934 0/0:22,15:38:54.17:0,54,696 0/1:15,14:29:47.72:48,0,349 0/0:23,0:23:57.17:0,57,676 0/0:28,8:36:36.95:0,37,771 0/1:22,11:33:40.79:41,0,430 0/0:19,3:22:48.12:0,48,553 0/0:35,19:55:68.65:0,69,808 0/0:36,26:63:41.97:0,42,885 0/0:23,6:29:56.90:0,57,649 0/0:34,8:42:78.06:0,78,899 0/0:20,9:29:45.13:0,45,524 0/1:38,14:53:38.03:38,0,919 0/0:25,6:31:69.19:0,69,806 0/0:26,9:36:57.15:0,57,650 0/0:26,14:40:72.22:0,72,855 0/0:25,13:38:75.14:0,75,871 0/0:31,8:39:44.78:0,45,823 1 34011665 . C CG 83.14 . AC=6;AF=0.071;AN=84;BaseQRankSum=7.157;DP=2039;FS=632.316;HRun=1;HaplotypeScore=218.6618;InbreedingCoeff=-0.1103;MQ=56.81;MQ0=0;MQRankSum=1.471;QD=0.23;ReadPosRankSum=-14.244 GT:AD:DP:GQ:PL 0/0:28,0:28:51.15:0,51,648 0/0:38,0:38:49.31:0,49,945 0/0:38,0:38:0.05:0,0,742 0/0:91,1:92:42.85:0,43,1316 0/1:96,0:96:48.43:48,0,1356 0/0:53,0:52:31.36:0,31,979 0/0:52,0:50:3.68:0,4,651 0/0:53,0:52:55.01:0,55,914 0/0:33,0:33:29.27:0,29,693 0/0:35,0:35:57.18:0,57,739 0/0:42,0:42:80.86:0,81,999 0/0:37,0:37:37.24:0,37,681 0/0:27,0:27:6.14:0,6,354 0/0:28,0:28:51.16:0,51,653 0/0:110,0:110:74.17:0,74,2173 0/0:40,0:40:1.55:0,2,718 0/0:34,0:34:3.34:0,3,677 0/1:29,0:29:38.68:39,0,458 0/1:82,0:82:20.59:21,0,1561 0/0:76,15:91:99:0,154,1913 0/1:69,0:69:10.70:11,0,1264 0/0:64,0:64:81.27:0,81,1022 0/0:92,0:92:78.69:0,79,1667 0/0:50,0:49:1.61:3,0,650 0/0:53,0:51:26.12:0,26,955 0/0:42,0:40:54.15:0,54,682 0/0:29,0:29:17.20:0,17,453 0/0:22,6:28:37.19:0,37,670 0/0:39,0:39:44.06:0,44,865 0/1:35,0:35:44.65:45,0,557 0/0:24,0:24:51.16:0,51,661 0/0:60,0:60:59.82:0,60,1046 0/0:66,0:66:40.32:0,40,1028 0/0:28,0:28:33.17:0,33,628 0/0:43,0:43:78.25:0,78,1004 0/0:32,0:32:33.10:0,33,418 0/1:57,0:57:29.42:29,0,922 0/0:31,0:31:63.20:0,63,817 0/0:37,0:37:54.17:0,54,701 0/0:43,0:43:44.24:0,44,821 0/0:40,0:40:69.22:0,69,896 0/0:39,0:39:43.29:0,43,866 1 34038214 . T C 51838.10 . AC=46;AF=0.548;AN=84;BaseQRankSum=-10.047;DP=3725;Dels=0.00;FS=11.716;HRun=0;HaplotypeScore=2.2349;InbreedingCoeff=0.0389;MQ=59.09;MQ0=0;MQRankSum=-2.800;QD=17.38;ReadPosRankSum=1.134 GT:AD:DP:GQ:PL 0/1:33,35:68:99:955,0,897 1/1:0,77:77:99:2293,196,0 1/1:0,47:47:99:1526,132,0 0/1:106,55:161:99:1353,0,3115 0/1:98,83:181:99:2149,0,2757 0/1:73,49:122:99:1383,0,2056 1/1:0,83:85:99:2916,229,0 0/0:124,1:125:99:0,337,4140 0/0:75,0:75:99:0,199,2422 0/0:76,0:76:99:0,214,2540 0/0:56,1:57:99:0,120,1813 0/1:32,26:58:99:624,0,880 1/1:1,48:49:99:1476,105,0 0/1:43,29:72:99:749,0,1169 0/1:136,73:209:99:1674,0,3749 0/0:87,0:87:99:0,244,2937 1/1:0,63:63:99:1991,171,0 1/1:0,75:75:99:2403,211,0 1/1:0,95:95:99:2991,265,0 1/1:0,117:117:99:3609,307,0 1/1:0,99:99:99:3157,277,0 1/1:1,66:67:99:2005,141,0 0/1:88,77:165:99:2223,0,2473 0/1:62,50:112:99:1349,0,1772 0/1:58,41:100:99:1127,0,1726 0/1:40,61:101:99:1725,0,1067 1/1:0,47:47:99:1515,132,0 0/1:46,36:82:99:960,0,1339 1/1:0,37:37:99:1247,108,0 0/1:30,28:58:99:666,0,845 0/1:40,31:71:99:840,0,1153 0/1:81,49:131:99:1187,0,2205 0/1:42,37:79:99:939,0,1184 0/0:65,0:65:99:0,178,2172 0/1:36,26:62:99:660,0,1072 0/0:79,0:79:99:0,217,2643 0/1:63,54:117:99:1459,0,1761 1/1:0,45:45:99:1393,120,0 0/0:94,0:94:99:0,262,3152 0/0:85,0:85:99:0,226,2736 0/1:37,25:62:99:657,0,979 0/1:43,25:68:99:637,0,1236 1 34068132 . T C 21.82 . AC=5;AF=0.060;AN=84;BaseQRankSum=-5.856;DP=729;Dels=0.01;FS=73.567;HRun=3;HaplotypeScore=2.7552;InbreedingCoeff=-0.0990;MQ=57.60;MQ0=0;MQRankSum=-0.137;QD=0.25;ReadPosRankSum=-4.409 GT:AD:DP:GQ:PL 0/0:6,7:13:0.70:8,0,196 0/0:9,7:16:23.10:0,23,256 0/0:8,13:21:24.07:0,24,276 0/0:15,10:25:15.64:0,16,502 0/1:14,18:32:12.96:13,0,460 0/1:8,9:17:48.16:48,0,194 0/0:5,1:6:15.05:0,15,184 0/0:7,8:15:21.06:0,21,242 0/0:3,1:4:9.02:0,9,102 0/1:7,10:17:15.29:15,0,191 0/0:7,7:14:21.06:0,21,245 0/0:9,4:13:24.07:0,24,294 0/0:10,5:15:30.09:0,30,358 0/0:7,9:16:18.05:0,18,208 0/0:33,13:46:5.62:0,6,940 0/0:10,5:15:24.07:0,24,278 0/0:9,7:16:27.08:0,27,323 0/0:19,4:23:51.10:0,51,574 0/0:23,6:29:54.15:0,54,662 0/0:18,5:23:45.14:0,45,542 0/0:10,6:16:18.06:0,18,220 0/0:5,5:10:15.05:0,15,180 0/0:16,14:31:19.59:0,20,533 0/1:5,6:11:15.38:15,0,163 0/0:11,8:19:33.09:0,33,388 0/0:12,7:19:35.60:0,36,398 0/0:6,4:10:18.06:0,18,218 0/0:6,11:17:18.05:0,18,210 0/0:5,6:11:15.01:0,15,160 0/0:5,17:22:15.05:0,15,178 0/0:4,8:12:12.03:0,12,140 0/0:11,10:21:1.73:0,2,351 0/0:13,10:23:36.11:0,36,425 0/0:7,6:13:18.06:0,18,219 0/0:11,8:19:33.09:0,33,375 0/0:11,6:17:3.61:0,4,357 0/0:11,2:13:1.54:0,2,318 0/0:9,9:18:24.07:0,24,277 0/1:4,7:11:18.40:18,0,115 0/0:7,6:13:21.06:0,21,250 0/0:6,5:11:18.03:0,18,201 0/0:5,4:9:15.05:0,15,180 1 34068136 . G A 784.21 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.317;DP=967;Dels=0.00;FS=0.795;HRun=0;HaplotypeScore=2.3528;InbreedingCoeff=-0.0244;MQ=56.39;MQ0=0;MQRankSum=2.831;QD=13.29;ReadPosRankSum=4.382 GT:AD:DP:GQ:PL 0/0:13,0:13:39.11:0,39,462 0/0:22,0:22:60.18:0,60,731 0/0:22,0:22:63.20:0,63,778 0/0:43,0:43:99:0,117,1495 0/0:37,0:37:99:0,105,1350 0/0:24,0:24:69.21:0,69,880 0/0:15,0:15:45.14:0,45,578 0/0:22,0:22:63.20:0,63,815 0/0:12,0:12:30.06:0,30,355 0/0:27,1:28:63.17:0,63,779 0/0:21,0:21:63.17:0,63,731 0/0:18,0:18:45.14:0,45,560 0/0:20,0:20:54.15:0,54,626 0/0:19,0:19:51.16:0,51,638 0/0:68,0:68:99:0,187,2206 0/0:20,0:20:57.12:0,57,638 0/0:20,0:20:57.17:0,57,697 0/1:14,12:26:99:342,0,380 0/1:12,21:33:99:505,0,325 0/0:24,0:24:69.19:0,69,805 0/0:22,0:22:63.18:0,63,747 0/0:17,0:17:42.12:0,42,499 0/0:46,0:46:99:0,126,1620 0/0:13,0:13:36.12:0,36,483 0/0:26,0:26:69.21:0,69,857 0/0:26,0:26:69.22:0,69,920 0/0:10,0:10:30.09:0,30,356 0/0:25,0:25:72.20:0,72,850 0/0:17,0:17:48.15:0,48,590 0/0:25,0:25:72.21:0,72,878 0/0:17,0:17:45.13:0,45,533 0/0:29,0:29:78.23:0,78,962 0/0:25,0:25:66.20:0,66,813 0/0:21,0:21:54.16:0,54,644 0/0:26,0:26:75.22:0,75,889 0/0:23,0:23:63.18:0,63,768 0/0:16,0:16:48.13:0,48,551 0/0:26,0:26:69.20:0,69,810 0/0:10,0:10:30.09:0,30,358 0/0:14,0:14:36.10:0,36,427 0/0:15,0:15:42.11:0,42,506 0/0:11,0:11:33.09:0,33,384 1 34090679 . T C 3978.10 . AC=6;AF=0.071;AN=84;BaseQRankSum=12.576;DP=2090;Dels=0.00;FS=0.324;HRun=0;HaplotypeScore=1.8544;InbreedingCoeff=-0.0769;MQ=59.07;MQ0=0;MQRankSum=1.186;QD=12.79;ReadPosRankSum=-1.034 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,99,1203 0/0:27,0:27:66.20:0,66,822 0/1:16,4:20:93.98:94,0,480 0/0:152,0:152:99:0,403,4827 0/0:123,0:123:99:0,313,3830 0/1:40,27:67:99:702,0,1130 0/0:59,0:59:99:0,153,1899 0/1:38,30:68:99:907,0,961 0/0:31,0:31:87.25:0,87,1023 0/0:26,0:26:69.21:0,69,841 0/0:28,0:28:78.24:0,78,941 0/0:24,1:25:34.86:0,35,766 0/0:26,1:27:36.08:0,36,784 0/0:27,0:28:75.20:0,75,878 0/0:108,1:109:99:0,274,3289 0/1:14,16:30:99:420,0,379 0/0:33,0:33:90.28:0,90,1104 0/0:20,0:21:57.17:0,57,677 0/0:83,0:83:99:0,196,2427 0/0:84,0:84:99:0,214,2599 0/0:95,0:96:99:0,250,3005 0/0:46,0:46:99:0,117,1408 0/0:131,0:131:99:0,322,4013 0/0:56,0:56:99:0,132,1660 0/1:39,31:70:99:824,0,1013 0/1:19,36:56:99:1031,0,516 0/0:17,0:17:48.14:0,48,571 0/0:28,0:28:81.24:0,81,965 0/0:20,0:20:48.15:0,48,596 0/0:26,0:27:72.21:0,72,860 0/0:31,0:31:90.25:0,90,1062 0/0:87,0:87:99:0,211,2608 0/0:52,0:52:99:0,138,1654 0/0:30,0:30:78.23:0,78,960 0/0:30,0:30:81.25:0,81,992 0/0:19,0:19:54.16:0,54,655 0/0:78,0:78:99:0,196,2401 0/0:22,0:22:54.14:0,54,663 0/0:35,0:35:93.28:0,93,1129 0/0:26,0:26:72.21:0,72,862 0/0:25,0:25:66.20:0,66,790 0/0:32,0:32:81.23:0,81,984 1 34090751 . T A 1886.03 . AC=3;AF=0.036;AN=84;BaseQRankSum=-3.062;DP=1472;Dels=0.00;FS=0.463;HRun=1;HaplotypeScore=1.2696;InbreedingCoeff=-0.0370;MQ=59.20;MQ0=0;MQRankSum=-0.698;QD=14.40;ReadPosRankSum=0.167 GT:AD:DP:GQ:PL 0/0:25,0:25:69.19:0,69,832 0/0:17,0:17:51.16:0,51,614 0/0:16,0:16:45.14:0,45,553 0/0:93,0:93:99:0,259,3172 0/0:63,0:63:99:0,187,2316 0/0:50,0:50:99:0,135,1725 0/0:45,0:45:99:0,129,1621 0/0:45,0:45:99:0,117,1479 0/0:31,0:31:84.24:0,84,1013 0/0:17,0:17:51.15:0,51,604 0/0:25,0:25:75.23:0,75,908 0/0:15,0:15:45.13:0,45,528 0/0:15,0:15:45.14:0,45,544 0/1:17,27:44:99:785,0,460 0/0:68,0:68:99:0,181,2223 0/0:26,0:26:78.23:0,78,923 0/0:26,0:26:66.20:0,66,813 0/0:18,0:18:51.15:0,51,609 0/0:51,0:51:99:0,129,1622 0/0:65,0:65:99:0,172,2131 0/1:27,23:50:99:618,0,758 0/1:17,20:37:99:558,0,458 0/0:89,0:89:99:0,253,3103 0/0:34,0:34:99:0,99,1253 0/0:51,0:51:99:0,150,1832 0/0:46,0:46:99:0,126,1569 0/0:12,0:12:33.10:0,33,401 0/0:22,0:22:66.19:0,66,774 0/0:17,0:17:48.15:0,48,584 0/0:30,0:30:81.23:0,81,961 0/0:17,0:17:51.15:0,51,610 0/0:60,0:60:99:0,159,1960 0/0:45,0:45:99:0,126,1528 0/0:14,0:14:42.13:0,42,510 0/0:29,0:29:78.23:0,78,941 0/0:24,0:24:66.21:0,66,822 0/0:46,0:46:99:0,123,1514 0/0:14,0:14:39.12:0,39,473 0/0:24,0:24:72.21:0,72,861 0/0:23,0:23:60.18:0,60,745 0/0:17,0:17:51.15:0,51,611 0/0:16,0:16:45.12:0,45,543 1 34182100 . A C 78.37 . AC=3;AF=0.036;AN=84;BaseQRankSum=-12.842;DP=895;Dels=0.00;FS=25.403;HRun=2;HaplotypeScore=0.8018;InbreedingCoeff=-0.0675;MQ=58.73;MQ0=0;MQRankSum=-0.453;QD=1.09;ReadPosRankSum=-0.996 GT:AD:DP:GQ:PL 0/0:13,8:21:5.63:0,6,345 0/0:12,3:15:33.05:0,33,350 0/0:13,5:18:33.04:0,33,346 0/0:19,10:29:51.07:0,51,528 0/0:18,7:26:51.11:0,51,550 0/0:16,6:22:45.06:0,45,474 0/0:12,4:16:33:0,33,314 0/0:13,1:15:35.97:0,36,323 0/0:13,4:17:30.07:0,30,335 0/0:17,5:23:39.07:0,39,412 0/1:11,5:16:14.20:14,0,324 0/0:7,7:14:18.05:0,18,199 0/0:14,3:17:39.08:0,39,421 0/0:14,5:20:36.09:0,36,398 0/0:39,23:63:82.12:0,82,1086 0/0:16,6:23:15.48:0,15,416 0/0:12,1:13:3.45:0,3,286 0/0:24,6:30:16.83:0,17,591 0/1:15,10:25:17.02:17,0,391 0/0:27,7:34:58.52:0,59,875 0/1:18,13:31:99:117,0,439 0/0:16,2:18:45.09:0,45,471 0/0:21,9:30:2.64:1,0,540 0/0:11,3:15:24.04:0,24,262 0/0:13,3:16:24.02:0,24,249 0/0:15,7:22:36.09:0,36,407 0/0:10,4:15:8.39:0,8,294 0/0:11,6:17:8.39:0,8,316 0/0:21,6:27:51.09:0,51,555 0/0:5,8:14:0.85:7,0,100 0/0:12,2:14:36.07:0,36,386 0/0:20,1:21:57.15:0,57,654 0/0:19,2:21:48.11:0,48,534 0/0:8,8:16:24.04:0,24,267 0/0:14,3:17:39.11:0,39,458 0/0:22,2:24:57.13:0,57,623 0/0:9,5:14:24.04:0,24,274 0/0:18,9:27:23.43:0,23,505 0/0:16,1:17:48.08:0,48,516 0/0:18,9:27:45.08:0,45,484 0/0:15,4:19:22.38:0,22,424 0/0:11,5:16:8.38:0,8,301 1 34401554 . A G 1655.88 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.160;DP=2638;DS;Dels=0.00;FS=2.880;HRun=1;HaplotypeScore=1.1216;InbreedingCoeff=-0.0244;MQ=59.02;MQ0=0;MQRankSum=1.471;QD=14.03;ReadPosRankSum=1.040 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,111,1300 0/0:52,0:52:99:0,144,1715 0/0:44,1:45:99:0,132,1568 0/0:114,0:114:99:0,331,3944 0/0:107,0:107:99:0,310,3748 0/0:89,0:89:99:0,259,3243 0/0:93,1:94:99:0,265,3252 0/0:64,0:64:99:0,181,2233 0/0:46,0:46:99:0,138,1646 0/0:51,0:51:99:0,150,1749 0/0:39,0:39:99:0,117,1397 0/0:55,1:56:99:0,156,1872 0/0:42,0:42:99:0,117,1427 0/0:46,0:46:99:0,129,1532 0/0:134,0:134:99:0,370,4315 0/0:55,0:55:99:0,165,1941 0/0:40,0:40:99:0,117,1384 0/0:34,0:34:96.28:0,96,1139 0/0:79,0:79:99:0,229,2755 0/0:91,0:91:99:0,265,3189 0/0:92,1:93:99:0,268,3241 0/0:59,0:59:99:0,175,2081 0/0:120,0:120:99:0,343,4201 0/0:66,0:66:99:0,190,2340 0/0:77,0:77:99:0,217,2637 0/0:66,0:66:99:0,190,2301 0/0:34,0:34:96.29:0,96,1154 0/0:48,0:48:99:0,138,1665 0/0:43,0:43:99:0,123,1445 0/0:42,0:42:99:0,120,1433 0/0:46,0:46:99:0,132,1593 0/0:98,0:99:99:0,274,3332 0/0:76,0:76:99:0,220,2619 0/0:53,0:53:99:0,156,1859 0/0:44,0:44:99:0,123,1477 0/0:48,1:49:99:0,135,1632 0/1:36,33:69:99:989,0,1074 0/1:25,24:49:99:729,0,710 0/0:43,0:43:99:0,126,1519 0/0:54,2:56:99:0,159,1912 0/0:52,0:52:99:0,150,1776 0/0:37,0:37:99:0,108,1302 1 35476609 . T G 665.19 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.758;DP=2400;Dels=0.00;FS=3.040;HRun=1;HaplotypeScore=0.7918;InbreedingCoeff=-0.0120;MQ=59.06;MQ0=0;MQRankSum=1.078;QD=12.79;ReadPosRankSum=-1.249 GT:AD:DP:GQ:PL 0/0:46,1:47:99:0,120,1482 0/0:41,0:41:99:0,108,1337 0/0:36,1:37:99:0,99,1200 0/0:143,0:144:99:0,352,4481 0/0:119,1:120:99:0,307,3930 0/0:96,2:98:99:0,238,3100 0/0:74,0:74:99:0,190,2395 0/0:100,0:100:99:0,265,3361 0/0:45,0:45:99:0,123,1493 0/0:33,0:33:93.27:0,93,1097 0/0:35,1:36:99:0,102,1234 0/0:37,0:37:99:0,108,1322 0/0:34,0:34:96.30:0,96,1184 0/0:32,1:33:90.26:0,90,1084 0/0:151,3:155:99:0,379,4677 0/0:40,0:40:99:0,114,1403 0/0:37,0:37:99:0,105,1252 0/0:36,0:36:99:0,105,1260 0/0:63,1:64:99:0,135,1912 0/0:70,2:72:99:0,181,2236 0/0:70,1:71:99:0,190,2323 0/0:39,0:39:99:0,108,1304 0/0:122,0:122:99:0,313,4002 0/0:84,0:84:99:0,208,2679 0/0:95,0:95:99:0,256,3263 0/0:75,1:77:99:0,199,2515 0/0:28,0:28:78.20:0,78,922 0/0:35,0:35:96.28:0,96,1198 0/0:20,0:20:57.17:0,57,688 0/0:51,0:51:99:0,126,1549 0/0:44,0:44:99:0,120,1469 0/0:60,0:60:99:0,150,1897 0/0:33,1:34:96.29:0,96,1163 0/0:32,0:32:93.23:0,93,1071 0/0:33,0:34:90.27:0,90,1098 0/0:48,1:49:99:0,120,1656 0/0:55,1:57:99:0,147,1772 0/0:40,1:41:99:0,117,1414 0/1:27,25:52:99:711,0,722 0/0:41,0:41:99:0,114,1394 0/0:22,0:22:57.18:0,57,717 0/0:28,0:28:69.22:0,69,878 1 35847032 . G A 1744.59 . AC=3;AF=0.036;AN=84;BaseQRankSum=-11.354;DP=2412;Dels=0.00;FS=1.002;HRun=0;HaplotypeScore=0.6329;InbreedingCoeff=-0.0370;MQ=59.32;MQ0=0;MQRankSum=1.556;QD=14.07;ReadPosRankSum=-0.498 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,111,1371 0/0:50,0:50:99:0,132,1657 0/0:40,0:40:99:0,111,1394 0/0:100,0:100:99:0,274,3681 0/0:86,0:86:99:0,247,3334 0/0:94,0:94:99:0,265,3632 0/0:86,0:86:99:0,235,3192 0/0:84,0:84:99:0,223,3006 0/0:45,0:45:99:0,126,1588 0/0:36,0:36:96.30:0,96,1203 0/0:51,0:51:99:0,147,1813 0/0:52,0:52:99:0,150,1872 0/0:34,0:34:90.27:0,90,1138 0/0:41,0:41:99:0,120,1474 0/0:139,0:141:99:0,373,4746 0/0:38,0:38:96.30:0,96,1219 0/0:52,0:52:99:0,147,1812 0/1:24,22:46:99:595,0,698 0/0:76,0:76:99:0,196,2477 0/0:67,0:67:99:0,190,2395 0/0:62,0:62:99:0,169,2155 0/1:10,21:31:99:572,0,259 0/0:104,0:104:99:0,292,3975 0/0:65,0:65:99:0,187,2509 0/0:76,0:76:99:0,211,2850 0/0:66,0:66:99:0,181,2456 0/0:31,0:31:93.28:0,93,1130 0/1:24,23:47:99:653,0,640 0/0:39,0:39:99:0,114,1449 0/0:47,0:47:99:0,123,1574 0/0:41,0:42:99:0,120,1493 0/0:54,0:54:99:0,150,1871 0/0:32,0:32:93.25:0,93,1122 0/0:57,0:57:99:0,166,2053 0/0:45,0:45:99:0,132,1645 0/0:49,0:49:99:0,147,1829 0/0:47,0:47:99:0,135,1665 0/0:59,0:59:99:0,160,2008 0/0:54,0:54:99:0,153,1916 0/0:54,0:54:99:0,150,1867 0/0:49,0:49:99:0,144,1799 0/0:43,0:44:99:0,123,1500 1 35864571 . A G 4076.48 . 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T C 3680.89 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.315;DP=4296;DS;Dels=0.00;FS=6.052;HRun=0;HaplotypeScore=1.2255;InbreedingCoeff=-0.0244;MQ=59.41;MQ0=0;MQRankSum=1.726;QD=12.44;ReadPosRankSum=0.717 GT:AD:DP:GQ:PL 0/0:90,0:90:99:0,241,2955 0/0:70,0:70:99:0,187,2308 0/0:67,0:67:99:0,178,2180 0/0:191,0:192:99:0,494,6181 0/0:178,0:179:99:0,472,5957 0/1:89,76:165:99:2267,0,2711 0/0:168,0:168:99:0,418,5391 0/1:75,56:131:99:1414,0,2166 0/0:88,0:88:99:0,232,2844 0/0:64,0:65:99:0,181,2145 0/0:83,0:83:99:0,220,2729 0/0:84,0:84:99:0,229,2803 0/0:55,0:55:99:0,150,1817 0/0:63,0:63:99:0,178,2171 0/0:230,0:230:99:0,599,7317 0/0:76,0:76:99:0,214,2603 0/0:86,0:86:99:0,229,2801 0/0:76,0:76:99:0,217,2639 0/0:90,0:90:99:0,253,3067 0/0:129,0:129:99:0,340,4154 0/0:133,0:133:99:0,352,4367 0/0:82,0:82:99:0,223,2711 0/0:199,0:199:99:0,506,6350 0/0:153,0:153:99:0,388,4921 0/0:160,0:160:99:0,406,5180 0/0:153,0:153:99:0,400,5027 0/0:57,0:57:99:0,163,1987 0/0:90,0:90:99:0,238,2943 0/0:69,0:69:99:0,187,2271 0/0:64,0:64:99:0,168,2060 0/0:52,0:52:99:0,147,1787 0/0:112,2:114:99:0,246,3381 0/0:63,0:63:99:0,162,2018 0/0:74,0:74:99:0,199,2443 0/0:59,0:59:99:0,166,2027 0/0:81,0:81:99:0,226,2758 0/0:108,0:108:99:0,289,3534 0/0:97,0:97:99:0,250,3103 0/0:72,0:72:99:0,208,2499 0/0:88,0:88:99:0,238,2911 0/0:68,0:68:99:0,187,2273 0/0:73,0:73:99:0,211,2564 1 35919979 . A G 465.84 . 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T G 1184.94 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.228;DP=3911;DS;Dels=0.00;FS=4.786;HRun=0;HaplotypeScore=2.6699;InbreedingCoeff=-0.0120;MQ=59.33;MQ0=0;MQRankSum=0.686;QD=12.88;ReadPosRankSum=-0.444 GT:AD:DP:GQ:PL 0/0:73,0:73:99:0,208,2592 0/0:86,0:86:99:0,229,2865 0/0:76,1:77:99:0,214,2673 0/0:111,0:111:99:0,277,3600 0/0:93,0:93:99:0,250,3234 0/0:90,0:90:99:0,238,3141 0/0:92,0:92:99:0,250,3249 0/0:88,0:88:99:0,226,2978 0/0:89,0:89:99:0,241,3023 0/0:72,0:72:99:0,208,2559 0/0:89,0:89:99:0,244,3064 0/0:62,0:62:99:0,166,2079 0/0:77,0:77:99:0,217,2681 0/0:74,0:74:99:0,214,2644 0/0:246,0:246:99:0,656,8153 0/0:72,0:72:99:0,178,2275 0/0:89,0:89:99:0,250,3108 0/0:73,0:73:99:0,208,2560 0/0:146,0:146:99:0,370,4682 0/0:128,0:128:99:0,346,4294 0/0:139,0:141:99:0,355,4422 0/0:78,0:78:99:0,214,2668 0/0:115,0:115:99:0,313,4040 0/0:73,0:73:99:0,196,2499 0/0:91,0:91:99:0,241,3162 0/0:82,0:82:99:0,211,2762 0/0:66,0:66:99:0,193,2390 0/0:91,0:91:99:0,259,3209 0/0:79,0:79:99:0,217,2689 0/0:78,0:78:99:0,223,2748 0/0:69,0:69:99:0,193,2409 0/0:150,0:150:99:0,373,4790 0/0:82,0:83:99:0,220,2719 0/0:72,0:72:99:0,205,2526 0/0:68,0:68:99:0,190,2332 0/0:87,0:87:99:0,238,2991 0/0:135,0:135:99:0,343,4353 0/0:83,0:83:99:0,229,2843 0/0:75,0:75:99:0,220,2702 0/0:89,0:89:99:0,250,3084 0/1:49,43:92:99:1231,0,1405 0/0:87,0:87:99:0,244,3021 1 36202585 . G A 1931.46 . AC=2;AF=0.024;AN=84;BaseQRankSum=-11.071;DP=4752;DS;Dels=0.00;FS=7.943;HRun=2;HaplotypeScore=1.9440;InbreedingCoeff=-0.0244;MQ=59.51;MQ0=0;MQRankSum=-0.059;QD=11.85;ReadPosRankSum=-1.070 GT:AD:DP:GQ:PL 0/0:109,0:109:99:0,310,3891 0/0:100,0:100:99:0,283,3563 0/0:73,0:73:99:0,208,2608 0/0:208,0:208:99:0,554,7420 0/0:173,0:173:99:0,479,6433 0/0:142,0:143:99:0,382,5141 0/0:157,0:157:99:0,412,5560 0/0:132,0:132:99:0,382,5120 0/1:50,40:90:99:1085,0,1434 0/1:38,35:73:99:909,0,1181 0/0:75,1:76:99:0,181,2644 0/0:90,0:90:99:0,256,3170 0/0:80,0:80:99:0,229,2887 0/0:54,0:54:99:0,156,1928 0/0:236,0:238:99:0,659,8243 0/0:69,0:69:99:0,190,2373 0/0:87,0:87:99:0,247,3091 0/0:110,0:110:99:0,298,3749 0/0:121,0:122:99:0,328,4162 0/0:133,0:133:99:0,358,4528 0/0:132,1:133:99:0,361,4535 0/0:73,0:73:99:0,193,2432 0/0:245,0:245:99:0,656,8942 0/0:152,0:153:99:0,400,5443 0/0:142,0:142:99:0,388,5206 0/0:123,0:123:99:0,337,4488 0/0:64,0:64:99:0,171,2107 0/0:83,0:83:99:0,241,2961 0/0:96,1:97:99:0,265,3358 0/0:85,1:86:99:0,238,2962 0/0:73,1:74:99:0,169,2433 0/0:161,0:161:99:0,433,5501 0/0:116,0:116:99:0,316,4007 0/0:92,1:93:99:0,253,3215 0/0:86,0:86:99:0,244,3083 0/0:96,0:96:99:0,256,3269 0/0:130,0:131:99:0,364,4575 0/0:102,0:102:99:0,271,3435 0/0:88,0:88:99:0,256,3156 0/0:108,0:108:99:0,316,3943 0/0:81,0:81:99:0,232,2871 0/0:100,0:100:99:0,289,3610 1 36214168 . GCTCTCCTTT G 37.47 . AC=3;AF=0.036;AN=84;BaseQRankSum=-6.672;DP=2975;FS=1487.909;HRun=0;HaplotypeScore=503.7228;InbreedingCoeff=-0.0375;MQ=59.33;MQ0=0;MQRankSum=1.170;QD=0.19;ReadPosRankSum=-16.896 GT:AD:DP:GQ:PL 0/1:59,0:59:29.12:29,0,5896 0/0:70,0:70:93.85:0,94,8213 0/0:47,0:47:56.48:0,56,5149 0/0:110,0:110:12.65:0,13,11994 0/1:83,0:83:19.47:19,0,9617 0/0:86,0:85:65.26:0,65,9516 0/0:72,0:70:99:0,158,8973 0/0:91,0:88:99:0,189,10454 0/0:71,0:71:98.77:0,99,8179 0/0:63,0:63:99:0,109,8094 0/0:77,0:77:88.85:0,89,8546 0/0:53,0:53:79.57:0,80,6264 0/0:39,0:39:63.46:0,63,4566 0/0:51,0:51:79.56:0,80,6101 0/0:161,29:190:85.22:0,85,20849 0/0:43,0:43:99:0,105,5016 0/0:62,0:62:99:0,157,7494 0/0:60,0:60:99:0,104,6970 0/0:89,0:89:99:0,165,11432 0/0:90,0:90:99:0,169,10711 0/0:95,0:95:99:0,200,11817 0/0:57,0:57:99:0,109,7267 0/0:116,0:116:62.96:0,63,11960 0/0:70,0:65:99:0,146,8397 0/0:85,0:82:99:0,154,9840 0/0:56,0:55:99:0,121,7187 0/0:42,0:42:83.59:0,84,4796 0/0:50,0:50:99:0,113,6689 0/0:42,0:42:99:0,105,5202 0/0:58,0:58:35.70:0,36,6431 0/0:59,0:59:86.54:0,87,6161 0/0:80,0:80:99:0,197,10702 0/0:77,0:77:99:0,180,9516 0/0:48,0:48:35.66:0,36,5312 0/0:58,0:58:99:0,138,6633 0/0:63,0:63:99:0,169,7810 0/0:111,0:111:99:0,257,14192 0/0:63,0:63:93.66:0,94,7011 0/0:49,0:49:95.49:0,95,5741 0/0:83,0:83:99:0,148,9584 0/0:54,0:54:72.61:0,73,6858 0/1:53,0:53:72.39:72,0,5473 1 36214169 . C G 77.19 . 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A G 305.36 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.026;DP=2635;Dels=0.00;FS=1.117;HRun=0;HaplotypeScore=1.0692;InbreedingCoeff=-0.0120;MQ=59.48;MQ0=0;MQRankSum=1.022;QD=9.25;ReadPosRankSum=-0.593 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,165,1942 0/0:55,0:55:99:0,156,1834 0/0:56,0:56:99:0,159,1853 0/0:81,0:81:99:0,235,2685 0/0:88,0:88:99:0,259,3015 0/0:81,0:81:99:0,235,2773 0/0:82,0:82:99:0,244,2867 0/0:86,0:88:99:0,241,2820 0/0:51,0:51:99:0,153,1758 0/0:52,0:52:99:0,150,1702 0/0:59,0:59:99:0,162,1917 0/0:44,0:44:99:0,132,1542 0/0:61,0:61:99:0,174,2021 0/0:58,0:58:99:0,165,1940 0/0:199,0:204:99:0,551,6385 0/1:21,12:33:99:352,0,606 0/0:61,0:61:99:0,184,2118 0/0:55,0:55:99:0,162,1885 0/0:73,0:73:99:0,199,2323 0/0:78,0:78:99:0,220,2618 0/0:71,0:71:99:0,196,2312 0/0:44,0:44:99:0,132,1501 0/0:80,0:80:99:0,232,2656 0/0:60,0:60:99:0,165,1930 0/0:63,0:63:99:0,184,2181 0/0:67,0:67:99:0,190,2220 0/0:37,0:37:99:0,111,1278 0/0:50,0:50:99:0,144,1655 0/0:50,0:50:99:0,141,1659 0/0:56,0:56:99:0,165,1933 0/0:53,0:53:99:0,144,1678 0/0:69,0:69:99:0,199,2319 0/0:45,0:45:99:0,129,1499 0/0:49,0:49:99:0,138,1650 0/0:59,0:59:99:0,178,2056 0/0:66,0:66:99:0,190,2192 0/0:39,0:39:99:0,114,1344 0/0:48,0:48:99:0,132,1529 0/0:53,0:53:99:0,141,1640 0/0:67,1:68:99:0,190,2216 0/0:38,0:38:99:0,111,1283 0/0:52,0:52:99:0,147,1718 1 36367096 . C G 85.80 . AC=2;AF=0.024;AN=84;BaseQRankSum=-16.322;DP=4620;DS;Dels=0.00;FS=653.741;HRun=3;HaplotypeScore=3.2471;InbreedingCoeff=-0.0331;MQ=59.03;MQ0=1;MQRankSum=-0.508;QD=0.27;ReadPosRankSum=-14.027 GT:AD:DP:GQ:PL 0/0:82,22:105:99:0,173,2410 0/0:83,24:107:99:0,193,2326 0/0:75,20:95:77.74:0,78,1846 0/0:103,44:147:99:0,202,3119 0/0:118,39:157:99:0,224,3407 0/0:96,27:123:99:0,217,2822 0/0:77,21:98:99:0,163,2157 0/0:95,20:115:99:0,198,2868 0/0:73,22:95:99:0,114,1630 0/0:54,15:70:43.44:0,43,1554 0/0:66,20:86:95.75:0,96,1848 0/0:70,12:82:99:0,171,2090 0/0:52,14:66:98.21:0,98,1547 0/0:72,22:94:1.84:3,0,1814 0/0:177,49:227:99:0,256,5230 0/0:56,24:81:82.11:0,82,1546 0/0:87,23:110:62.62:0,63,2271 0/0:69,15:85:99:0,165,2013 0/1:99,54:154:79.50:79,0,2735 0/0:147,33:180:99:0,297,3828 0/0:107,45:153:23.69:0,24,2744 0/0:87,9:96:99:0,193,2321 0/0:143,55:198:99:0,227,4304 0/0:81,18:100:99:0,157,2342 0/0:78,28:107:99:0,110,2175 0/0:78,21:100:99:0,171,2221 0/0:61,12:74:73.99:0,74,1660 0/0:79,15:94:99:0,158,2106 0/0:73,14:87:99:0,159,1936 0/0:77,28:105:67.34:0,67,2060 0/0:54,17:71:99:0,129,1588 0/0:153,29:182:99:0,295,3952 0/0:80,21:101:99:0,140,2081 0/0:59,15:74:99:0,153,1889 0/0:60,21:81:54.09:0,54,1420 0/0:79,27:107:99:0,146,2171 0/1:110,50:161:68.31:68,0,2845 0/0:61,24:85:99:0,111,1593 0/0:70,23:93:77.79:0,78,1597 0/0:67,28:95:99:0,104,1843 0/0:51,20:71:14.47:0,14,1365 0/0:88,19:108:99:0,168,2655 1 36499817 . C A 1348.14 . AC=27;AF=0.321;AN=84;BaseQRankSum=-15.320;DP=1578;Dels=0.00;FS=713.681;HRun=1;HaplotypeScore=0.7510;InbreedingCoeff=-0.4720;MQ=58.96;MQ0=0;MQRankSum=-1.010;QD=1.31;ReadPosRankSum=-13.481 GT:AD:DP:GQ:PL 0/1:29,10:39:3.14:3,0,793 0/1:20,8:28:8.31:8,0,593 0/1:8,7:15:48.98:49,0,198 0/0:45,8:53:60.94:0,61,1257 0/0:41,14:55:22.57:0,23,1255 0/0:34,12:46:10.52:0,11,899 0/1:34,18:52:81.11:81,0,976 0/1:28,11:39:11.83:12,0,665 0/1:24,11:35:71.10:71,0,614 0/1:21,10:31:39.07:39,0,546 0/1:16,9:25:99:102,0,433 0/1:37,12:49:38.39:38,0,882 0/0:24,5:29:27.46:0,27,585 0/0:22,7:29:1.96:2,0,671 0/1:72,35:107:14.46:14,0,2114 0/0:20,1:21:19.82:0,20,605 0/0:21,7:28:20.53:0,21,536 0/1:26,10:36:99:145,0,586 0/1:22,15:37:99:129,0,576 0/1:42,15:57:35.27:35,0,1006 0/1:23,9:32:72.99:73,0,669 0/0:12,6:18:3.18:0,3,230 0/1:40,15:55:4.98:5,0,1141 0/0:31,10:41:78.16:0,78,972 0/0:45,19:64:30.03:0,30,1216 0/1:36,9:45:24.43:24,0,978 0/1:14,5:19:20.26:20,0,314 0/0:30,10:40:32.70:0,33,860 0/1:21,7:28:60.19:60,0,503 0/1:22,5:27:7.78:8,0,526 0/1:23,9:32:86.37:86,0,617 0/1:33,10:43:34.32:34,0,807 0/0:27,10:37:7.57:0,8,729 0/1:15,6:21:33.71:34,0,299 0/0:26,5:31:24.89:0,25,650 0/1:26,6:32:5.94:6,0,563 0/1:24,7:31:6.60:7,0,601 0/0:21,8:29:13.55:0,14,457 0/1:24,13:37:99:109,0,712 0/1:23,11:34:99:125,0,559 0/0:24,6:30:49.96:0,50,595 0/1:25,15:40:99:197,0,415 1 36553673 . A G 35593.86 . AC=76;AF=0.905;AN=84;BaseQRankSum=-5.520;DP=1227;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9363;InbreedingCoeff=-0.1053;MQ=58.85;MQ0=0;MQRankSum=-0.354;QD=29.01;ReadPosRankSum=-2.075 GT:AD:DP:GQ:PL 1/1:0,21:21:60.16:660,60,0 1/1:0,26:26:69.17:814,69,0 1/1:0,31:31:87.24:1002,87,0 1/1:0,44:44:99:1440,117,0 1/1:0,29:29:84.25:1020,84,0 1/1:0,24:24:72.21:848,72,0 1/1:0,28:28:78.22:936,78,0 0/1:10,12:22:99:364,0,308 0/1:12,11:23:99:286,0,347 0/1:13,7:20:99:183,0,322 0/1:6,14:20:99:365,0,145 1/1:0,24:24:66.17:739,66,0 1/1:0,24:24:63.16:725,63,0 1/1:0,47:47:99:1508,135,0 1/1:0,75:75:99:2295,202,0 1/1:0,31:31:87.22:981,87,0 1/1:0,35:35:99:1098,99,0 1/1:0,19:19:51.13:582,51,0 1/1:1,36:37:67.04:1107,67,0 1/1:0,28:28:81.22:926,81,0 1/1:0,34:35:87.24:998,87,0 0/1:11,21:32:99:580,0,249 1/1:0,31:31:87.27:1088,87,0 1/1:0,13:13:36.11:443,36,0 1/1:0,16:16:48.15:588,48,0 1/1:0,19:19:57.16:653,57,0 1/1:0,23:23:69.19:788,69,0 1/1:0,32:32:96.25:1067,96,0 0/1:9,7:16:99:194,0,254 1/1:0,19:19:54.14:589,54,0 1/1:0,40:40:99:1204,105,0 1/1:0,47:47:99:1412,120,0 1/1:0,28:28:81.22:925,81,0 1/1:0,35:35:99:1090,99,0 1/1:0,36:36:87.23:1037,87,0 1/1:0,34:34:84.24:1010,84,0 1/1:0,24:24:69.19:794,69,0 1/1:0,32:32:90.20:991,90,0 1/1:0,31:32:87.24:985,87,0 0/1:20,10:31:99:204,0,649 0/1:9,9:18:99:224,0,273 1/1:0,26:26:78.20:851,78,0 1 36565739 . C T 53.77 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.677;DP=670;Dels=0.00;FS=2.385;HRun=0;HaplotypeScore=0.7757;InbreedingCoeff=-0.0161;MQ=58.28;MQ0=0;MQRankSum=-1.081;QD=3.16;ReadPosRankSum=1.288 GT:AD:DP:GQ:PL 0/0:14,0:14:30.06:0,30,325 0/0:18,0:18:51.12:0,51,548 0/0:6,0:7:15.04:0,15,171 0/0:32,0:32:72.19:0,72,840 0/0:34,0:34:69.18:0,69,786 0/0:23,0:23:48.10:0,48,532 0/1:13,4:17:99:100,0,330 0/0:26,0:26:63.17:0,63,730 0/0:13,0:13:30.08:0,30,337 0/0:8,0:8:18.05:0,18,202 0/0:17,0:17:45.11:0,45,499 0/0:15,0:15:39.09:0,39,415 0/0:8,0:8:21.05:0,21,230 0/0:17,0:17:45.10:0,45,485 0/0:39,0:39:99:0,105,1123 0/0:17,0:17:42.11:0,42,486 0/0:7,0:7:15.04:0,15,178 0/0:13,0:13:27.04:0,27,277 0/0:14,0:14:33.10:0,33,393 0/0:17,0:17:39.08:0,39,436 0/0:13,0:13:24.06:0,24,266 0/0:10,0:10:24.05:0,24,255 0/0:35,0:35:87.25:0,87,1025 0/0:26,0:26:57.15:0,57,701 0/0:22,0:22:48.15:0,48,598 0/0:22,0:22:51.13:0,51,588 0/0:13,0:13:39.08:0,39,412 0/0:11,0:11:24.06:0,24,281 0/0:14,0:14:33.08:0,33,375 0/0:5,0:5:12.01:0,12,124 0/0:16,0:16:48.12:0,48,528 0/0:17,0:17:45.13:0,45,522 0/0:11,0:11:24.03:0,24,263 0/0:15,0:15:27.06:0,27,293 0/0:5,0:5:9.02:0,9,96 0/0:15,0:15:36.10:0,36,409 0/0:15,0:15:42.12:0,42,470 0/0:8,0:8:21.06:0,21,237 0/0:13,0:13:30.07:0,30,317 0/0:9,0:9:15.04:0,15,162 0/0:7,0:7:18.05:0,18,195 0/0:12,0:12:27.07:0,27,302 1 36565837 . C T 67.09 . AC=2;AF=0.025;AN=80;BaseQRankSum=-1.300;DP=196;Dels=0.00;FS=2.416;HRun=0;HaplotypeScore=0.1730;InbreedingCoeff=0.1648;MQ=58.20;MQ0=0;MQRankSum=-0.538;QD=9.58;ReadPosRankSum=0.446 GT:AD:DP:GQ:PL 0/0:8,0:8:18.06:0,18,243 0/0:4,0:4:12.04:0,12,147 0/0:4,0:4:12.04:0,12,153 0/0:8,0:8:21.07:0,21,286 0/0:12,0:12:36.08:0,36,439 ./. 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6.02:0,6,73 0/0:6,0:6:18.04:0,18,210 0/0:5,0:5:12.04:0,12,149 0/0:3,0:3:9.02:0,9,98 0/0:5,0:5:12.03:0,12,146 0/0:8,0:8:24.05:0,24,277 0/0:4,0:4:9.03:0,9,115 0/0:11,0:11:33.10:0,33,409 0/0:7,0:7:21.07:0,21,270 0/0:6,0:6:12.01:0,12,137 0/0:3,0:3:9.02:0,9,103 0/0:4,0:4:9.03:0,9,105 0/0:5,0:5:15.05:0,15,194 0/0:5,0:5:12.02:0,12,125 0/0:3,0:3:9.03:0,9,108 0/0:10,0:10:30.09:0,30,381 0/0:2,0:2:6.01:0,6,63 0/0:3,0:3:9.02:0,9,112 0/0:1,0:1:3.01:0,3,42 0/0:1,0:1:3.01:0,3,31 0/0:5,0:5:15.05:0,15,187 0/0:7,0:7:21.07:0,21,267 0/0:4,0:4:12.03:0,12,140 0/0:3,0:3:9.03:0,9,119 0/0:9,0:9:24.08:0,24,323 0/0:2,0:2:6.02:0,6,75 0/0:3,0:3:9.03:0,9,116 0/0:5,0:5:15.05:0,15,192 0/0:5,0:5:15.05:0,15,193 0/0:6,0:6:18.05:0,18,216 ./.:.:1:.:0,0,0 0/0:3,0:3:9.03:0,9,118 0/1:2,3:5:53.16:93,0,53 0/1:0,1:1:1.76:38,3,0 0/0:6,0:6:18.03:0,18,219 1 36638089 . A G 26.95 . AC=4;AF=0.048;AN=84;BaseQRankSum=-9.998;DP=593;Dels=0.00;FS=105.174;HRun=2;HaplotypeScore=0.3868;InbreedingCoeff=-0.1308;MQ=58.51;MQ0=0;MQRankSum=-2.316;QD=0.38;ReadPosRankSum=-6.412 GT:AD:DP:GQ:PL 0/0:6,3:9:1.56:4,0,196 0/0:7,4:11:0.46:10,0,206 0/0:7,3:10:18.04:0,18,199 0/0:15,7:22:0.55:0,1,290 0/1:15,12:28:61.45:61,0,404 0/0:11,4:15:27.05:0,27,321 0/0:7,6:13:21.06:0,21,267 0/0:14,6:20:30.09:0,30,367 0/0:9,5:14:0.40:0,0,262 0/0:9,1:10:21.06:0,21,248 0/0:4,1:5:12.03:0,12,139 0/0:9,2:11:2.39:0,2,244 0/0:11,2:13:21.04:0,21,247 0/0:7,2:9:12.03:0,12,143 0/0:31,14:45:33.81:0,34,803 0/0:6,3:9:9.02:0,9,108 0/0:4,0:4:9.03:0,9,113 0/0:11,2:13:24.07:0,24,290 0/1:16,6:22:11.19:11,0,416 0/0:14,4:18:36.08:0,36,418 0/0:12,4:17:4.13:0,4,333 0/0:11,4:15:24.05:0,24,288 0/0:16,11:27:3.61:0,4,386 0/0:6,7:13:18.06:0,18,224 0/0:14,6:20:30.08:0,30,376 0/0:13,6:19:24.08:0,24,300 0/0:8,2:10:21.05:0,21,239 0/0:6,4:10:15.02:0,15,161 0/0:8,4:12:21.07:0,21,263 0/0:6,3:9:0.56:9,0,166 0/1:5,3:8:12.62:13,0,132 0/0:15,3:18:33.11:0,33,423 0/0:6,3:9:12:0,12,120 0/0:5,3:8:12.03:0,12,129 0/0:10,3:13:26.75:0,27,307 0/0:11,1:12:30.08:0,30,348 0/0:15,3:18:6.05:0,6,387 0/0:9,2:11:1.89:3,0,193 0/0:9,1:10:12.01:0,12,131 0/0:6,5:11:18.05:0,18,216 0/0:5,4:9:15.02:0,15,169 0/1:8,5:13:11.96:12,0,157 1 36638146 . G A 230.65 . 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G A 25940.55 . 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C T 52517.68 . 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C A 3800.74 . 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G A 85054.86 . 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C T 2904.53 . 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G A 4858.30 . 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G A 1547.86 . 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A G 1473.76 . 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C T 2039.83 . 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G A 8238.80 . AC=8;AF=0.095;AN=84;BaseQRankSum=2.325;DP=3173;Dels=0.00;FS=3.773;HRun=2;HaplotypeScore=1.9290;InbreedingCoeff=0.1711;MQ=59.12;MQ0=0;MQRankSum=1.333;QD=14.48;ReadPosRankSum=2.469 GT:AD:DP:GQ:PL 0/1:32,28:60:99:754,0,916 0/0:68,0:68:99:0,181,2153 0/0:46,0:46:99:0,120,1441 0/1:67,59:126:99:1745,0,1880 0/1:61,53:114:99:1355,0,1856 0/0:98,0:98:99:0,256,3232 0/0:91,0:91:99:0,244,3042 0/0:93,0:93:99:0,253,3159 0/0:59,1:60:99:0,156,1898 0/0:65,0:65:99:0,171,2077 0/0:40,0:40:99:0,111,1287 0/0:48,0:48:99:0,138,1599 0/1:23,24:47:99:657,0,567 0/0:66,0:66:99:0,168,2017 0/0:200,0:201:99:0,499,6045 0/0:58,0:58:99:0,156,1848 0/1:33,32:66:99:852,0,875 0/0:47,0:47:99:0,129,1539 0/0:98,1:99:99:0,262,3063 0/0:113,0:113:99:0,292,3518 0/0:115,0:115:99:0,292,3482 0/0:82,0:82:99:0,217,2513 0/0:113,0:113:99:0,307,3835 0/0:68,0:68:99:0,180,2238 0/0:78,0:78:99:0,220,2748 0/0:78,0:78:99:0,211,2662 0/0:49,0:49:99:0,129,1598 0/0:67,0:68:99:0,187,2212 0/0:48,0:48:99:0,129,1506 0/0:76,0:76:99:0,214,2484 0/0:43,0:43:99:0,123,1442 0/0:111,0:111:99:0,286,3432 0/0:84,0:84:99:0,223,2660 0/0:58,0:58:99:0,150,1804 0/0:54,0:54:99:0,147,1758 0/0:54,0:54:99:0,150,1722 0/1:54,60:115:99:1480,0,1351 0/0:59,1:60:99:0,156,1870 1/1:0,41:41:99:1396,114,0 0/0:62,0:62:99:0,174,2061 0/0:57,0:57:99:0,162,1862 0/0:53,0:53:99:0,138,1703 1 38185723 . C T 3684.53 . AC=8;AF=0.095;AN=84;BaseQRankSum=8.894;DP=1583;Dels=0.00;FS=1.429;HRun=0;HaplotypeScore=2.4028;InbreedingCoeff=0.1678;MQ=58.95;MQ0=0;MQRankSum=-0.468;QD=12.00;ReadPosRankSum=-2.765 GT:AD:DP:GQ:PL 0/1:15,15:30:99:310,0,376 0/0:26,0:26:72.19:0,72,800 0/0:13,0:13:36.09:0,36,397 0/1:55,51:106:99:1236,0,1473 0/1:46,31:77:99:762,0,1201 0/0:59,0:59:99:0,147,1788 0/0:61,0:61:99:0,147,1782 0/0:53,0:53:99:0,144,1705 0/0:34,0:34:96.25:0,96,1068 0/0:24,0:24:72.17:0,72,783 0/0:21,0:21:57.14:0,57,629 0/0:23,0:23:66.17:0,66,738 0/1:15,6:21:99:151,0,414 0/0:32,0:33:93.24:0,93,1020 0/0:89,0:89:99:0,244,2676 0/0:20,0:20:51.12:0,51,554 0/1:10,13:23:99:329,0,234 0/0:25,0:25:72.18:0,72,797 0/0:44,0:44:99:0,102,1145 0/0:52,0:52:99:0,135,1482 0/0:43,0:43:99:0,114,1232 0/0:40,0:40:99:0,111,1215 0/0:84,0:85:99:0,229,2672 0/0:39,0:40:96.27:0,96,1147 0/0:48,0:48:99:0,129,1525 0/0:46,0:47:99:0,111,1373 0/0:22,0:22:60.15:0,60,653 0/0:23,0:23:63.16:0,63,696 0/0:32,0:32:90.22:0,90,987 0/0:31,0:32:90.22:0,90,970 0/0:26,0:26:66.17:0,66,736 0/0:59,0:59:99:0,141,1635 0/0:41,0:41:99:0,108,1234 0/0:22,0:22:60.15:0,60,663 0/0:28,0:28:81.22:0,81,915 0/0:36,0:36:90.22:0,90,967 0/1:21,12:33:99:316,0,492 0/0:15,0:15:42.11:0,42,474 1/1:0,17:17:48.15:581,48,0 0/0:20,1:21:11.15:0,11,458 0/0:20,0:20:48.12:0,48,521 0/0:19,0:19:57.15:0,57,616 1 38186189 . C T 1468.69 . AC=12;AF=0.143;AN=84;BaseQRankSum=-4.179;DP=555;Dels=0.00;FS=3.274;HRun=0;HaplotypeScore=0.8750;InbreedingCoeff=0.0164;MQ=59.05;MQ0=0;MQRankSum=-0.615;QD=9.48;ReadPosRankSum=-2.175 GT:AD:DP:GQ:PL 0/0:11,0:11:24.08:0,24,310 0/0:14,0:14:36.11:0,36,456 0/0:4,0:4:12.04:0,12,147 0/1:7,11:18:99:303,0,205 0/0:28,0:28:75.24:0,75,976 0/0:14,0:14:36.11:0,36,465 0/0:9,0:9:27.08:0,27,333 0/0:8,0:8:21.07:0,21,268 0/0:10,0:10:30.07:0,30,343 0/1:3,1:4:25.33:25,0,71 0/0:14,0:14:36.11:0,36,461 0/1:6,2:8:15.08:15,0,182 0/1:6,5:11:99:116,0,189 0/0:14,0:14:39.12:0,39,463 0/1:20,13:33:99:310,0,569 0/1:2,6:8:50.70:189,0,51 0/0:17,0:17:45.13:0,45,553 1/1:0,5:5:15.05:182,15,0 0/1:15,6:21:99:129,0,428 0/0:31,0:31:84.26:0,84,1044 0/0:21,0:21:42.12:0,42,508 0/0:7,0:7:21.06:0,21,251 0/1:14,7:21:99:181,0,444 0/0:12,0:12:30.09:0,30,392 0/0:13,0:13:33.10:0,33,422 0/0:7,2:9:21.06:0,21,263 0/0:6,0:6:15.04:0,15,188 0/0:5,0:5:15.05:0,15,186 0/0:12,0:12:33.09:0,33,392 0/0:15,0:15:42.13:0,42,511 0/0:12,0:12:36.11:0,36,437 0/0:19,0:19:48.13:0,48,579 0/0:20,0:20:51.14:0,51,633 0/1:10,4:14:65.12:65,0,278 0/0:4,0:4:12.04:0,12,156 0/1:7,5:12:99:103,0,187 0/0:21,0:21:51.15:0,51,621 0/0:9,0:9:27.08:0,27,330 0/0:16,0:16:42.13:0,42,541 0/0:6,0:6:15.04:0,15,181 0/0:9,0:9:24.07:0,24,289 0/0:10,0:10:27.08:0,27,332 1 38186206 . C G 1605.87 . AC=7;AF=0.083;AN=84;BaseQRankSum=-4.294;DP=575;Dels=0.00;FS=4.913;HRun=0;HaplotypeScore=0.5623;InbreedingCoeff=0.0485;MQ=58.87;MQ0=0;MQRankSum=-0.671;QD=14.60;ReadPosRankSum=3.097 GT:AD:DP:GQ:PL 0/1:7,6:13:99:158,0,126 0/0:8,0:8:21.07:0,21,271 0/0:8,0:8:24.07:0,24,289 0/1:10,4:14:99:116,0,305 0/1:9,15:24:99:508,0,283 0/0:14,0:14:42.13:0,42,548 0/0:15,0:15:42.13:0,42,560 0/0:9,0:9:27.09:0,27,353 0/0:11,0:11:27.08:0,27,342 0/0:5,0:5:15.04:0,15,175 0/0:15,0:15:42.13:0,42,531 0/0:10,0:10:27.09:0,27,344 0/1:5,5:10:99:151,0,159 0/0:12,0:12:33.09:0,33,405 0/0:36,0:36:87.27:0,87,1094 0/0:15,0:15:39.12:0,39,491 0/1:11,6:17:99:138,0,365 0/0:4,0:4:12.04:0,12,149 0/0:21,0:21:60.17:0,60,739 0/0:24,0:24:72.23:0,72,908 0/0:28,0:28:72.22:0,72,915 0/0:11,0:11:33.09:0,33,404 0/0:33,0:33:81.26:0,81,1089 0/0:8,0:8:24.08:0,24,328 0/0:14,0:14:39.13:0,39,526 0/0:15,0:15:45.14:0,45,592 0/0:9,0:9:21.07:0,21,280 0/0:6,0:6:18.06:0,18,223 0/0:14,0:14:39.13:0,39,505 0/0:14,0:14:36.10:0,36,445 0/0:9,0:9:27.09:0,27,345 0/0:22,0:22:63.20:0,63,801 0/0:16,0:16:48.14:0,48,601 0/0:12,0:12:33.09:0,33,400 0/0:6,0:6:18.06:0,18,226 0/0:13,0:13:36.12:0,36,459 0/1:6,12:19:99:281,0,182 0/0:9,0:9:24.08:0,24,313 0/1:1,12:13:2.76:367,1,0 0/0:7,0:7:15.04:0,15,180 0/0:6,0:6:18.05:0,18,218 0/0:6,0:6:15.05:0,15,185 1 38188740 . C T 5208.60 . AC=8;AF=0.095;AN=84;BaseQRankSum=4.515;DP=2188;Dels=0.00;FS=6.227;HRun=0;HaplotypeScore=1.7024;InbreedingCoeff=0.1711;MQ=59.03;MQ0=0;MQRankSum=3.148;QD=13.96;ReadPosRankSum=2.388 GT:AD:DP:GQ:PL 0/1:23,16:39:99:411,0,597 0/0:44,0:44:99:0,114,1322 0/0:32,0:32:90.23:0,90,1038 0/1:59,43:102:99:1141,0,1735 0/1:49,43:92:99:1250,0,1310 0/0:80,0:80:99:0,217,2630 0/0:54,0:54:99:0,153,1871 0/0:64,0:64:99:0,178,2170 0/0:39,0:39:99:0,102,1189 0/0:37,0:37:99:0,108,1216 0/0:35,0:35:99:0,102,1146 0/0:35,0:35:99:0,102,1139 0/1:15,16:31:99:464,0,412 0/0:48,0:48:99:0,141,1587 0/0:153,0:155:99:0,427,4951 0/0:35,0:35:99:0,99,1109 0/1:13,13:26:99:327,0,347 0/0:35,0:35:96.25:0,96,1089 0/0:76,0:76:99:0,205,2340 0/0:79,0:79:99:0,214,2474 0/0:65,0:65:99:0,177,2037 0/0:48,0:48:99:0,132,1493 0/0:98,0:98:99:0,271,3289 0/0:59,0:59:99:0,162,1965 0/0:53,0:53:99:0,135,1664 0/0:44,0:44:99:0,120,1488 0/0:41,0:42:99:0,105,1251 0/0:40,0:40:99:0,114,1301 0/0:33,0:33:96.25:0,96,1065 0/0:39,0:39:99:0,105,1202 0/0:39,0:39:99:0,111,1248 0/0:60,0:60:99:0,168,1964 0/0:47,0:47:99:0,135,1488 0/0:45,0:45:99:0,123,1349 0/0:37,0:37:99:0,102,1180 0/0:43,0:43:99:0,117,1337 0/1:27,19:47:99:436,0,743 0/0:57,1:58:99:0,122,1734 1/1:0,36:36:99:1179,99,0 0/0:36,0:37:96.25:0,96,1095 0/0:44,0:44:99:0,111,1308 0/0:35,0:36:99:0,102,1187 1 38188768 . C T 5180.17 . 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A G 5529.40 . 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C T 1491.73 . 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T C 19253.60 . 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C G 4298.94 . 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T C 8468.63 . AC=22;AF=0.262;AN=84;BaseQRankSum=6.474;DP=1121;Dels=0.00;FS=0.810;HRun=1;HaplotypeScore=0.4239;InbreedingCoeff=0.3867;MQ=59.24;MQ0=0;MQRankSum=-0.433;QD=19.03;ReadPosRankSum=0.597 GT:AD:DP:GQ:PL 0/1:14,11:25:99:321,0,408 0/0:31,0:31:84.26:0,84,1051 0/0:19,0:19:57.17:0,57,688 0/0:40,0:40:96.31:0,96,1287 0/0:26,0:26:66.22:0,66,886 0/0:25,0:25:69.22:0,69,920 0/0:15,0:15:42.14:0,42,564 0/0:26,0:26:57.18:0,57,764 1/1:0,17:17:51.17:666,51,0 0/1:8,14:22:99:452,0,181 1/1:0,22:22:57.19:749,57,0 0/0:26,0:26:66.20:0,66,844 0/0:27,0:27:66.21:0,66,861 0/1:8,9:17:99:272,0,229 0/1:51,50:101:99:1408,0,1366 1/1:0,20:20:51.16:667,51,0 0/1:11,13:24:99:376,0,316 0/0:11,0:11:33.10:0,33,412 0/0:36,0:36:84.27:0,84,1088 0/0:37,0:37:99:0,102,1287 0/0:40,0:40:99:0,99,1262 0/1:22,7:30:99:167,0,615 0/0:37,0:37:93.31:0,93,1251 0/0:21,0:21:54.17:0,54,714 0/0:19,0:19:51.17:0,51,676 0/0:31,0:31:78.25:0,78,1022 1/1:0,14:14:39.13:508,39,0 1/1:0,25:25:66.21:866,66,0 1/1:0,29:29:75.24:979,75,0 0/1:12,12:24:99:354,0,352 0/0:14,0:14:36.12:0,36,473 0/1:18,14:32:99:445,0,467 0/1:11,8:19:99:229,0,274 0/0:17,0:17:45.14:0,45,566 0/0:24,1:25:23.89:0,24,738 0/0:34,0:34:96.31:0,96,1219 0/0:27,0:27:69.22:0,69,892 0/0:27,0:27:63.20:0,63,813 0/0:19,0:19:51.14:0,51,637 0/0:27,0:27:72.23:0,72,923 0/1:22,2:24:11.70:12,0,669 0/0:19,0:19:51.16:0,51,660 1 39311617 . T G 2956.46 . AC=5;AF=0.060;AN=84;BaseQRankSum=-15.650;DP=2171;Dels=0.00;FS=2.071;HRun=0;HaplotypeScore=0.8491;InbreedingCoeff=0.3620;MQ=59.42;MQ0=0;MQRankSum=-0.782;QD=19.20;ReadPosRankSum=-2.508 GT:AD:DP:GQ:PL 0/1:17,18:35:99:488,0,489 0/1:19,20:39:99:531,0,535 0/0:36,0:36:99:0,102,1302 0/0:66,0:66:99:0,190,2432 0/0:91,0:91:99:0,262,3434 0/0:71,0:71:99:0,199,2648 0/0:73,0:73:99:0,211,2771 0/0:71,0:72:99:0,208,2672 0/0:43,0:43:99:0,123,1552 0/0:32,0:32:93.29:0,93,1160 0/0:33,1:34:68.72:0,69,1167 0/0:40,0:40:99:0,120,1496 0/0:51,0:51:99:0,138,1761 0/0:40,0:40:99:0,108,1390 0/0:131,0:131:99:0,340,4364 0/0:41,0:41:99:0,120,1497 0/0:41,0:41:99:0,120,1510 0/0:41,0:42:99:0,117,1481 0/0:81,0:81:99:0,211,2698 0/0:65,0:65:99:0,172,2209 0/0:60,0:60:99:0,166,2083 0/0:47,0:47:99:0,123,1574 0/0:86,0:86:99:0,247,3226 0/0:62,0:62:99:0,169,2240 0/0:70,0:70:99:0,205,2667 0/0:68,0:68:99:0,193,2514 0/1:13,15:28:99:396,0,376 1/1:0,52:52:99:1645,147,0 0/0:30,0:30:81.26:0,81,1047 0/0:42,0:42:99:0,117,1478 0/0:33,0:33:90.29:0,90,1157 0/0:41,0:41:99:0,114,1469 0/0:38,0:38:99:0,102,1288 0/0:41,0:41:99:0,114,1450 0/0:43,0:43:99:0,120,1487 0/0:48,0:48:99:0,135,1729 0/0:59,0:59:99:0,153,1930 0/0:38,0:38:99:0,102,1298 0/0:42,0:42:99:0,123,1555 0/0:41,0:41:99:0,108,1390 0/0:41,0:41:99:0,123,1524 0/0:36,0:36:99:0,105,1305 1 39782063 . G A 2892.44 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.970;DP=7524;DS;Dels=0.00;FS=3.168;HRun=0;HaplotypeScore=2.4866;InbreedingCoeff=-0.0120;MQ=59.61;MQ0=0;MQRankSum=-1.320;QD=11.95;ReadPosRankSum=2.002 GT:AD:DP:GQ:PL 0/0:141,0:141:99:0,373,4741 0/0:189,0:189:99:0,494,6262 0/0:155,0:155:99:0,403,5147 0/0:250,0:250:99:0,683,9183 0/1:135,107:242:99:2939,0,4432 0/0:249,0:250:99:0,686,9267 0/0:250,0:250:99:0,683,9215 0/0:250,0:250:99:0,689,9323 0/0:163,0:163:99:0,433,5494 0/0:142,0:144:99:0,397,4993 0/0:124,0:124:99:0,343,4369 0/0:149,0:149:99:0,391,5020 0/0:116,0:116:99:0,301,3860 0/0:121,0:121:99:0,337,4281 0/0:246,0:246:99:0,671,8463 0/0:130,0:130:99:0,355,4504 0/0:165,0:165:99:0,442,5651 0/0:147,0:147:99:0,400,5076 0/0:234,0:234:99:0,608,7651 0/0:206,0:206:99:0,536,6901 0/0:228,0:228:99:0,572,7250 0/0:121,0:121:99:0,319,4123 0/0:250,0:250:99:0,701,9474 0/0:250,0:250:99:0,680,9178 0/0:250,0:250:99:0,665,9027 0/0:250,0:250:99:0,680,9236 0/0:113,0:113:99:0,310,3925 0/0:165,1:166:99:0,454,5717 0/0:146,0:146:99:0,382,4938 0/0:157,0:157:99:0,409,5252 0/0:144,0:144:99:0,400,5080 0/0:201,0:201:99:0,509,6642 0/0:142,0:142:99:0,373,4809 0/0:166,0:166:99:0,439,5608 0/0:138,0:138:99:0,373,4762 0/0:170,0:170:99:0,460,5836 0/0:193,0:195:99:0,505,6312 0/0:150,0:150:99:0,400,5104 0/0:156,0:156:99:0,427,5419 0/0:142,0:142:99:0,391,4944 0/0:163,0:163:99:0,451,5595 0/0:154,0:154:99:0,409,5260 1 39783013 . G T 641.56 . 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A G 554.83 . 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C T 80630.40 . 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C T 1009.67 . 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G A 24.58 . 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C A 815.33 . 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A C 7959.89 . 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G A 8875.10 . 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T C 1309.28 . 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A G 5825.02 . 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G A 8245.26 . 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T C 216573.93 . AC=84;AF=1.000;AN=84;BaseQRankSum=0.725;DP=6882;DS;Dels=0.00;FS=3.439;HRun=0;HaplotypeScore=4.1734;InbreedingCoeff=0.0000;MQ=59.05;MQ0=1;MQRankSum=0.527;QD=31.47;ReadPosRankSum=-0.351 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4154,361,0 1/1:0,124:125:99:3770,328,0 1/1:1,125:126:99:3856,300,0 1/1:0,250:250:99:8428,680,0 1/1:0,241:241:99:8158,656,0 1/1:0,243:243:99:7908,620,0 1/1:0,248:250:99:8236,647,0 1/1:0,245:246:99:8057,638,0 1/1:0,133:133:99:4173,355,0 1/1:0,106:106:99:3095,259,0 1/1:0,106:106:99:3324,280,0 1/1:0,117:117:99:3628,310,0 1/1:0,88:88:99:2770,235,0 1/1:0,109:109:99:3453,292,0 1/1:0,249:250:99:7582,665,0 1/1:0,110:110:99:3463,292,0 1/1:0,136:136:99:4197,352,0 1/1:1,110:112:99:3353,286,0 1/1:1,243:246:99:7216,611,0 1/1:0,244:246:99:7119,599,0 1/1:0,229:231:99:7044,596,0 1/1:0,186:186:99:5521,466,0 1/1:0,242:243:99:8349,662,0 1/1:2,237:239:99:7720,584,0 1/1:0,249:249:99:8328,653,0 1/1:0,243:243:99:7752,596,0 1/1:1,87:88:99:2730,208,0 1/1:0,94:94:99:3100,268,0 1/1:0,100:101:99:3236,280,0 1/1:2,115:117:99:3519,259,0 1/1:0,93:93:99:3007,265,0 1/1:0,238:238:99:7190,605,0 1/1:0,154:154:99:4621,388,0 1/1:0,108:108:99:3321,289,0 1/1:1,108:109:99:3411,257,0 1/1:0,132:132:99:4247,361,0 1/1:0,243:243:99:7311,638,0 1/1:0,140:140:99:4287,364,0 1/1:0,130:130:99:4110,349,0 1/1:0,135:135:99:4253,370,0 1/1:0,108:108:99:3379,292,0 1/1:0,131:131:99:4198,358,0 1 40150156 . G A 13016.62 . AC=34;AF=0.405;AN=84;BaseQRankSum=5.751;DP=1107;Dels=0.00;FS=10.002;HRun=0;HaplotypeScore=1.0779;InbreedingCoeff=0.2093;MQ=59.02;MQ0=0;MQRankSum=0.575;QD=20.50;ReadPosRankSum=1.861 GT:AD:DP:GQ:PL 0/0:17,0:17:45.07:0,45,478 0/0:20,0:21:51.13:0,51,599 0/0:15,0:15:39.11:0,39,469 0/1:27,30:57:99:807,0,748 0/0:41,0:41:99:0,114,1429 1/1:0,22:22:57.18:710,57,0 1/1:1,29:30:46.46:964,46,0 1/1:0,28:28:75.19:912,75,0 1/1:1,27:28:45.59:822,46,0 0/1:6,11:17:99:317,0,114 0/1:11,8:20:99:234,0,261 0/1:8,13:21:99:362,0,176 0/0:17,0:17:45.13:0,45,535 1/1:0,28:28:72.22:885,72,0 0/0:64,0:64:99:0,147,1740 0/0:15,0:15:33.09:0,33,382 0/0:26,0:26:72.18:0,72,813 0/0:12,0:12:30.08:0,30,364 0/0:46,0:46:99:0,126,1458 0/0:36,0:36:93.25:0,93,1102 0/0:48,0:48:99:0,126,1484 0/1:22,14:36:99:380,0,558 1/1:0,37:37:99:1220,99,0 0/1:10,12:22:99:350,0,243 0/1:15,11:26:99:290,0,408 0/0:20,0:20:54.15:0,54,653 0/1:9,12:21:99:367,0,169 0/0:22,0:22:51.10:0,51,595 0/1:11,5:16:99:139,0,304 0/1:11,9:20:99:269,0,302 0/1:10,13:23:99:379,0,214 0/0:36,0:36:99:0,99,1193 0/1:16,15:31:99:412,0,415 0/1:4,5:9:99:142,0,101 1/1:0,21:21:57.17:695,57,0 0/0:22,0:22:57.16:0,57,671 0/1:15,18:33:99:466,0,337 0/1:14,7:22:99:113,0,422 1/1:0,20:20:57.17:679,57,0 0/1:9,13:22:99:383,0,234 0/0:14,0:14:36.09:0,36,424 1/1:0,24:25:60.16:720,60,0 1 40226103 . G A 1278.95 . AC=4;AF=0.048;AN=84;BaseQRankSum=-0.815;DP=1571;Dels=0.00;FS=2.625;HRun=0;HaplotypeScore=2.8143;InbreedingCoeff=-0.0500;MQ=53.28;MQ0=25;MQRankSum=1.690;QD=7.48;ReadPosRankSum=-0.834 GT:AD:DP:GQ:PL 0/0:29,0:31:72.16:0,72,799 0/0:33,0:33:57.14:0,57,652 0/0:29,0:29:66.15:0,66,740 0/1:20,17:39:99:397,0,352 0/1:26,12:39:99:133,0,637 0/0:39,0:40:75.20:0,75,904 0/0:33,0:33:60.13:0,60,719 0/0:30,0:30:63.18:0,63,768 0/0:35,0:35:78.20:0,78,890 0/0:23,0:23:48.11:0,48,518 0/0:36,0:37:72.19:0,72,819 0/0:28,0:29:66.17:0,66,773 0/0:22,0:22:51.11:0,51,551 0/0:27,0:27:57.14:0,57,651 0/0:87,0:88:99:0,174,1950 0/0:39,0:39:69.17:0,69,773 0/0:34,0:34:75.20:0,75,857 0/0:35,0:35:72.17:0,72,812 0/0:41,0:41:84.22:0,84,959 0/0:64,0:64:99:0,138,1549 0/1:29,18:51:99:329,0,576 0/1:20,22:42:99:507,0,345 0/0:57,0:57:99:0,105,1291 0/0:36,0:36:66.20:0,66,827 0/0:28,0:28:63.18:0,63,776 0/0:41,0:43:69.21:0,69,855 0/0:23,0:23:36.08:0,36,398 0/0:26,0:27:63.15:0,63,700 0/0:17,0:17:36.10:0,36,418 0/0:43,0:43:90.23:0,90,1025 0/0:33,0:33:75.18:0,75,860 0/0:61,0:62:99:0,108,1262 0/0:50,0:51:99:0,123,1356 0/0:25,0:26:57.12:0,57,625 0/0:39,0:39:90.23:0,90,1075 0/0:37,0:38:87.21:0,87,987 0/0:38,0:39:72.17:0,72,806 0/0:32,0:32:72.19:0,72,828 0/0:30,0:30:72.18:0,72,810 0/0:31,0:31:54.11:0,54,600 0/0:36,0:36:72.15:0,72,792 0/0:38,0:39:75.19:0,75,838 1 40226134 . C T 739.13 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.078;DP=2251;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.1000;InbreedingCoeff=-0.0120;MQ=55.00;MQ0=19;MQRankSum=3.573;QD=12.97;ReadPosRankSum=1.299 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,117,1339 0/0:49,0:49:99:0,135,1492 0/0:37,0:37:99:0,105,1209 0/0:69,0:69:99:0,178,2192 0/0:57,1:58:99:0,127,1921 0/0:46,0:46:99:0,132,1595 0/0:47,0:47:99:0,126,1561 0/0:35,0:35:99:0,105,1231 0/0:52,0:52:99:0,135,1591 0/0:40,0:40:99:0,108,1194 0/0:45,0:45:99:0,123,1457 0/0:41,0:41:99:0,108,1178 0/0:37,0:37:99:0,102,1151 0/0:41,0:41:99:0,117,1265 0/0:148,0:149:99:0,385,4506 0/0:54,0:54:99:0,153,1757 0/1:29,28:57:99:785,0,638 0/0:37,0:37:99:0,108,1223 0/0:68,0:68:99:0,174,1970 0/0:95,0:95:99:0,256,2918 0/0:80,0:80:99:0,210,2351 0/0:49,0:49:99:0,129,1467 0/0:76,0:76:99:0,220,2666 0/0:52,0:52:99:0,150,1839 0/0:47,0:47:99:0,135,1669 0/0:47,0:47:99:0,135,1636 0/0:28,0:28:72.18:0,72,809 0/0:49,0:49:99:0,135,1519 0/0:39,0:39:99:0,114,1340 0/0:46,0:46:99:0,129,1467 0/0:54,0:54:99:0,156,1732 0/0:62,0:62:99:0,150,1717 0/0:63,0:63:99:0,177,1952 0/0:48,0:48:99:0,129,1406 0/0:49,0:49:99:0,129,1464 0/0:53,0:53:99:0,138,1586 0/0:68,0:68:99:0,177,2026 0/0:48,0:48:99:0,120,1387 0/0:45,0:45:99:0,129,1429 0/0:47,0:47:99:0,126,1412 0/0:45,0:45:99:0,120,1351 0/0:56,0:56:99:0,156,1739 1 40230336 . C G 6669.76 . AC=30;AF=0.357;AN=84;BaseQRankSum=1.590;DP=1718;Dels=0.00;FS=32.446;HRun=1;HaplotypeScore=1.0310;InbreedingCoeff=-0.4511;MQ=24.93;MQ0=205;MQRankSum=0.699;QD=5.47;ReadPosRankSum=0.491 GT:AD:DP:GQ:PL 0/0:24,0:24:48:0,48,431 0/1:9,7:16:99:121,0,158 0/1:15,10:25:99:204,0,232 0/1:85,31:116:99:475,0,1584 0/1:80,15:95:99:108,0,1645 0/1:28,39:67:99:848,0,341 0/1:40,8:48:46.85:47,0,859 1/1:2,26:28:54.10:575,54,0 0/0:30,0:30:66.08:0,66,630 0/0:34,0:34:81.10:0,81,787 0/1:21,7:28:91.94:92,0,410 0/1:22,5:27:81.27:81,0,343 0/1:18,11:29:99:208,0,300 0/0:37,1:38:96.10:0,96,900 0/0:63,2:66:99:0,126,1175 0/1:29,3:32:15.94:16,0,475 0/1:22,7:29:88.39:88,0,384 0/1:6,14:20:61.04:253,0,61 0/1:24,10:34:65.20:65,0,496 0/0:50,0:50:99:0,132,1275 0/0:40,1:42:87.08:0,87,818 0/1:34,5:40:44.21:44,0,673 0/1:74,39:113:99:649,0,1617 0/1:26,18:44:99:376,0,467 0/1:50,17:67:99:282,0,798 0/0:51,1:52:99:0,114,1073 0/1:13,11:24:99:167,0,291 0/1:16,4:20:33.90:34,0,353 0/1:12,12:24:99:215,0,256 0/1:30,13:43:99:193,0,460 0/1:18,6:24:94.75:95,0,282 0/0:30,0:30:69.09:0,69,687 0/0:38,0:39:84.08:0,84,791 0/1:25,11:36:99:118,0,445 0/1:20,23:43:99:360,0,368 0/1:18,13:31:99:239,0,315 0/0:42,1:43:87.10:0,87,823 0/0:31,1:32:75.07:0,75,696 0/0:19,0:19:42.03:0,42,383 0/1:21,22:43:99:386,0,421 0/1:13,13:26:99:295,0,212 0/1:38,9:47:34.23:34,0,744 1 40240691 . C T 171.86 . AC=6;AF=0.130;AN=46;BaseQRankSum=-0.694;DP=2022;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1495;InbreedingCoeff=0.0398;MQ=5.14;MQ0=1877;MQRankSum=2.124;QD=0.78;ReadPosRankSum=0.021 GT:AD:DP:GQ:PL 0/0:29,0:29:3.01:0,3,30 ./. 1/1:26,5:31:3.01:37,3,0 0/1:79,39:118:96.12:133,0,96 ./. 0/0:68,0:68:3.01:0,3,33 ./. 0/0:69,0:69:3.01:0,3,33 ./. 0/0:35,0:35:3.01:0,3,30 0/0:39,0:39:3.01:0,3,33 0/0:39,0:39:6:0,6,52 0/0:28,0:28:3.01:0,3,30 ./. 0/0:119,0:119:15.01:0,15,139 0/0:30,0:30:6.01:0,6,63 ./. 0/0:37,1:38:3:0,3,27 ./. 0/0:64,0:64:6.02:0,6,67 ./. 0/0:43,0:43:3.01:0,3,30 0/0:68,26:94:3.01:0,3,33 ./. ./. 0/0:54,0:54:3.01:0,3,33 0/0:25,0:25:3.01:0,3,37 ./. 0/0:38,0:38:6.01:0,6,56 1/1:23,9:32:6.01:56,6,0 0/1:31,7:38:20.67:21,0,27 ./. 0/0:55,0:55:3.01:0,3,33 ./. ./. ./. 0/0:76,0:76:3.01:0,3,33 ./. ./. 0/0:51,0:51:3.01:0,3,33 ./. ./. 1 40349131 . G A 5379.12 . AC=31;AF=0.369;AN=84;BaseQRankSum=5.397;DP=586;Dels=0.00;FS=0.345;HRun=0;HaplotypeScore=0.6027;InbreedingCoeff=0.0257;MQ=58.69;MQ0=0;MQRankSum=1.595;QD=16.55;ReadPosRankSum=-1.016 GT:AD:DP:GQ:PL 1/1:0,8:8:24.07:288,24,0 1/1:0,12:12:36.11:432,36,0 0/1:6,4:10:99:115,0,168 0/0:36,0:36:90.24:0,90,1059 0/1:11,15:26:99:458,0,282 0/1:12,13:25:99:397,0,359 0/1:16,5:21:99:113,0,395 1/1:0,25:25:66.16:771,66,0 0/1:3,10:13:63.68:326,0,64 0/0:11,0:11:30.08:0,30,336 0/1:5,6:11:99:127,0,101 0/0:6,0:6:18.04:0,18,197 0/1:2,5:7:54.43:95,0,54 0/0:9,0:9:21.06:0,21,261 0/0:42,0:42:99:0,123,1393 0/0:10,0:10:24.06:0,24,271 0/1:6,2:8:46.23:46,0,175 0/1:5,4:9:99:121,0,147 1/1:0,10:10:30.09:367,30,0 1/1:0,11:11:24.05:282,24,0 0/1:10,4:14:99:107,0,265 0/1:4,5:9:99:158,0,99 0/0:26,0:26:63.19:0,63,764 0/0:18,0:18:48.12:0,48,571 0/0:18,0:18:51.14:0,51,604 0/1:11,5:16:99:101,0,334 0/0:8,0:8:24.06:0,24,275 0/1:3,7:11:51.68:161,0,52 0/0:7,0:7:18.03:0,18,184 0/1:5,3:8:87.81:88,0,119 0/1:3,5:8:73.33:157,0,73 0/1:7,2:9:49.31:49,0,207 1/1:0,9:9:27.08:328,27,0 0/0:11,0:11:30.09:0,30,353 0/0:13,0:13:36.10:0,36,425 0/0:8,0:8:24.06:0,24,262 0/1:6,4:10:93.27:93,0,126 0/1:8,6:14:99:142,0,205 0/1:18,3:21:58.42:58,0,447 0/0:11,0:11:30.07:0,30,332 0/0:9,0:9:24.04:0,24,245 0/0:18,0:18:45.12:0,45,517 1 40529974 . G A 3105.32 . AC=2;AF=0.024;AN=84;BaseQRankSum=-9.613;DP=3713;DS;Dels=0.00;FS=2.085;HRun=1;HaplotypeScore=1.4333;InbreedingCoeff=-0.0244;MQ=58.93;MQ0=3;MQRankSum=1.217;QD=14.86;ReadPosRankSum=-0.393 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,175,2223 0/0:64,0:64:99:0,187,2351 0/0:55,0:55:99:0,150,1934 0/0:162,0:162:99:0,430,5774 0/0:159,0:159:99:0,448,6132 0/0:114,0:114:99:0,313,4198 0/0:111,0:111:99:0,313,4170 0/0:143,0:143:99:0,397,5357 0/0:70,0:70:99:0,193,2477 0/0:68,0:68:99:0,190,2390 0/0:61,0:61:99:0,175,2210 0/0:60,0:60:99:0,172,2167 0/0:69,0:69:99:0,193,2451 0/0:56,0:56:99:0,150,1910 0/0:210,0:210:99:0,533,6913 0/0:57,0:57:99:0,160,2024 0/0:75,0:76:99:0,211,2646 0/0:56,0:56:99:0,156,1964 0/1:51,63:115:99:1840,0,1417 0/1:47,47:94:99:1327,0,1372 0/0:113,0:113:99:0,304,3876 0/0:65,0:65:99:0,187,2361 0/0:141,0:141:99:0,394,5363 0/0:107,0:107:99:0,298,3968 0/0:111,0:111:99:0,304,4083 0/0:106,0:106:99:0,292,3904 0/0:68,0:68:99:0,199,2468 0/0:65,0:65:99:0,181,2284 0/0:53,0:53:99:0,150,1907 0/0:67,0:67:99:0,187,2385 0/0:59,0:60:99:0,160,2046 0/0:120,0:120:99:0,325,4169 0/0:55,0:55:99:0,147,1889 0/0:69,0:69:99:0,193,2445 0/0:94,0:94:99:0,259,3290 0/0:83,0:83:99:0,241,3054 0/0:110,0:110:99:0,283,3608 0/0:73,0:73:99:0,205,2609 0/0:84,0:84:99:0,235,2996 0/0:65,0:65:99:0,193,2404 0/0:53,0:53:99:0,147,1858 0/0:87,0:87:99:0,241,3085 1 40661414 . A C 61.75 . AC=5;AF=0.060;AN=84;BaseQRankSum=-27.357;DP=3540;DS;Dels=0.00;FS=1828.785;HRun=1;HaplotypeScore=1.7310;InbreedingCoeff=-0.0675;MQ=59.21;MQ0=0;MQRankSum=0.450;QD=0.15;ReadPosRankSum=-19.792 GT:AD:DP:GQ:PL 0/0:46,18:64:48.04:0,48,1526 0/0:50,21:71:99:0,109,1723 0/0:33,13:46:51.98:0,52,1118 0/0:78,59:137:99:0,117,2667 0/0:86,62:148:99:0,157,2922 0/0:98,39:137:99:0,163,3315 0/0:91,48:139:99:0,235,3377 0/0:76,41:117:99:0,149,2673 0/0:56,20:76:99:0,110,1894 0/0:38,21:59:52.45:0,52,1192 0/0:38,19:57:60.28:0,60,1285 0/0:45,20:65:99:0,111,1595 0/0:39,17:56:99:0,117,1405 0/0:34,15:49:30.63:0,31,950 0/0:166,84:250:99:0,191,5511 0/0:31,17:48:36.46:0,36,1049 0/0:49,21:70:93.40:0,93,1516 0/0:45,17:62:96.85:0,97,1512 0/1:62,39:101:42.43:42,0,1898 0/0:66,32:98:99:0,180,2166 0/1:69,33:102:39.72:40,0,2082 0/0:34,18:52:48.22:0,48,1144 0/0:102,62:164:99:0,100,3561 0/0:91,49:140:99:0,184,3142 0/0:86,40:127:99:0,244,3158 0/0:70,41:111:99:0,102,2382 0/0:22,13:35:16.94:0,17,767 0/1:38,35:73:32.94:33,0,1146 0/0:29,19:48:12.27:0,12,934 0/0:39,21:60:56.37:0,56,1314 0/0:41,18:59:88.70:0,89,1365 0/0:82,28:110:99:0,192,2655 0/0:32,23:55:88.16:0,88,1083 0/0:32,22:54:64.12:0,64,1137 0/0:31,21:52:34.04:0,34,962 0/0:45,26:71:7.64:0,8,1444 0/1:50,31:81:19.38:19,0,1422 0/0:36,19:56:77.12:0,77,1225 0/0:33,18:51:67.65:0,68,1133 0/1:39,26:65:23.17:23,0,1222 0/0:33,23:56:9.22:0,9,1012 0/0:44,23:67:98.94:0,99,1549 1 40778273 . G A 1335.01 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.048;DP=1010;Dels=0.00;FS=6.426;HRun=0;HaplotypeScore=0.8475;InbreedingCoeff=-0.0250;MQ=58.65;MQ0=0;MQRankSum=0.363;QD=16.69;ReadPosRankSum=-0.581 GT:AD:DP:GQ:PL 0/0:20,0:20:54.16:0,54,658 0/0:13,0:13:36.09:0,36,413 0/0:12,0:12:30.09:0,30,379 0/0:58,0:58:99:0,150,1902 0/0:59,0:59:99:0,150,1934 0/1:16,27:43:99:694,0,453 0/0:43,0:43:99:0,105,1390 0/1:11,26:37:99:703,0,233 0/0:16,0:16:45.13:0,45,546 0/0:13,0:13:33.09:0,33,390 0/0:15,0:15:39.10:0,39,464 0/0:18,0:18:39.11:0,39,477 0/0:23,0:23:54.16:0,54,664 0/0:5,0:5:15.04:0,15,180 0/0:43,0:43:99:0,111,1292 0/0:20,0:20:60.19:0,60,737 0/0:12,0:12:33.10:0,33,396 0/0:16,0:17:45.13:0,45,542 0/0:23,0:23:63.17:0,63,711 0/0:34,0:34:87.23:0,87,1061 0/0:23,0:23:51.15:0,51,629 0/0:12,0:12:36.11:0,36,437 0/0:63,0:63:99:0,141,1888 0/0:31,0:32:78.24:0,78,1028 0/0:38,0:38:93.29:0,93,1230 0/0:34,0:34:87.25:0,87,1118 0/0:9,0:9:21.06:0,21,248 0/0:14,0:14:39.11:0,39,454 0/0:19,0:19:51.15:0,51,624 0/0:14,0:14:36.10:0,36,437 0/0:14,0:14:39.11:0,39,467 0/0:50,0:50:99:0,120,1468 0/0:15,0:15:30.09:0,30,391 0/0:15,0:15:39.12:0,39,495 0/0:18,0:18:48.14:0,48,594 0/0:15,0:15:33.10:0,33,414 0/0:24,0:25:57.16:0,57,677 0/0:15,0:15:45.13:0,45,543 0/0:16,0:16:42.11:0,42,483 0/0:15,0:15:39.11:0,39,467 0/0:21,0:21:54.17:0,54,686 0/0:9,0:9:24.07:0,24,278 1 40881041 . C G 201456.12 . AC=77;AF=0.917;AN=84;BaseQRankSum=20.452;DP=6780;DS;Dels=0.00;FS=1.708;HRun=2;HaplotypeScore=2.0553;InbreedingCoeff=-0.0909;MQ=59.72;MQ0=0;MQRankSum=-0.519;QD=29.71;ReadPosRankSum=-1.940 GT:AD:DP:GQ:PL 1/1:0,123:124:99:4132,337,0 1/1:0,141:141:99:4769,379,0 1/1:0,135:135:99:4626,379,0 1/1:0,243:243:99:8775,671,0 1/1:0,204:204:99:7527,563,0 1/1:1,221:222:99:7975,568,0 1/1:0,196:196:99:7080,542,0 1/1:0,194:194:99:6728,509,0 1/1:0,160:160:99:5504,448,0 1/1:0,138:138:99:4675,379,0 1/1:0,107:107:99:3614,295,0 1/1:0,134:134:99:4588,373,0 1/1:0,126:126:99:4351,358,0 1/1:0,131:131:99:4416,355,0 0/1:137,112:249:99:3198,0,3627 1/1:0,111:111:99:3646,295,0 0/1:86,66:152:99:1783,0,2260 1/1:0,131:131:99:4619,373,0 1/1:0,194:194:99:6402,524,0 0/1:109,100:209:99:2741,0,2841 0/1:124,101:226:99:2838,0,3134 1/1:0,119:120:99:4013,325,0 1/1:0,234:234:99:8735,662,0 0/1:110,96:206:99:2815,0,3175 0/1:125,105:230:99:3178,0,3528 1/1:0,173:173:99:5884,442,0 1/1:1,127:128:99:4494,364,0 1/1:1,131:132:99:4341,323,0 1/1:0,131:131:99:4454,358,0 1/1:0,124:126:99:4201,337,0 1/1:0,102:102:99:3679,295,0 0/1:117,84:201:99:2260,0,2981 1/1:2,134:138:99:4532,314,0 1/1:0,154:154:99:5181,421,0 1/1:0,140:140:99:4763,385,0 1/1:0,166:166:99:5482,436,0 1/1:0,182:183:99:5913,478,0 1/1:0,158:158:99:5425,439,0 1/1:0,102:102:99:3572,286,0 1/1:0,149:149:99:5042,403,0 1/1:1,126:127:99:4271,326,0 1/1:1,152:153:99:5233,393,0 1 40923019 . G A 19065.36 . AC=23;AF=0.274;AN=84;BaseQRankSum=-31.230;DP=2443;Dels=0.00;FS=7.226;HRun=0;HaplotypeScore=1.1497;InbreedingCoeff=0.1019;MQ=59.48;MQ0=0;MQRankSum=1.212;QD=17.27;ReadPosRankSum=-0.485 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,135,1729 0/0:47,0:47:99:0,123,1606 0/0:42,0:42:99:0,117,1482 0/1:36,50:86:99:1407,0,1080 0/1:32,30:62:99:856,0,1111 0/0:61,0:61:99:0,175,2368 0/0:61,0:61:99:0,163,2279 0/0:66,0:66:99:0,172,2363 0/1:16,23:39:99:674,0,437 1/1:0,39:39:99:1285,108,0 0/1:17,17:34:99:415,0,551 0/0:49,0:49:99:0,123,1599 0/0:39,0:39:99:0,102,1321 0/0:53,0:53:99:0,144,1858 0/1:87,92:179:99:2426,0,2275 1/1:0,38:38:99:1266,108,0 0/1:26,31:57:99:840,0,791 0/0:54,0:54:99:0,156,1988 0/0:80,0:80:99:0,226,2853 0/0:89,0:89:99:0,226,2928 0/1:54,41:96:99:1099,0,1533 0/1:32,20:52:99:486,0,1029 0/0:86,0:87:99:0,241,3357 0/0:61,0:61:99:0,160,2177 0/0:76,0:76:99:0,208,2857 0/1:15,23:38:99:640,0,440 0/1:24,19:43:99:555,0,680 0/0:30,0:30:84.27:0,84,1072 0/1:26,13:39:99:331,0,812 0/0:47,0:47:99:0,120,1548 0/0:39,0:39:99:0,111,1416 0/0:93,0:93:99:0,214,2833 0/0:56,0:56:99:0,144,1882 0/0:58,0:58:99:0,163,2059 0/0:38,1:39:72.21:0,72,1299 0/1:19,32:51:99:895,0,521 1/1:0,80:80:99:2531,208,0 0/1:20,23:43:99:618,0,640 1/1:2,47:49:62.77:1488,63,0 0/0:61,0:61:99:0,169,2162 0/1:18,14:32:99:384,0,507 0/1:16,31:47:99:868,0,484 1 41006286 . T G 94.74 . 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T C 80094.27 . 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T C 10859.14 . 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G A 8240.43 . 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A G 7667.22 . 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T C 1256.26 . 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T TGGGG 61.99 . 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T TG 54.98 . 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A G 3560.85 . 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C A 4132.58 . 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G A 543.74 . 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C G 24879.08 . 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A G 24927.96 . 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C A 851.43 . 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C G 2986.06 . 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T C 37110.26 . 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C T 2898.74 . 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C T 38660.47 . 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C T 1535.46 . 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G A 1084.29 . 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C T 686.26 . AC=1;AF=0.012;AN=84;BaseQRankSum=-7.836;DP=5227;DS;Dels=0.00;FS=0.681;HRun=0;HaplotypeScore=3.8545;InbreedingCoeff=-0.0120;MQ=59.37;MQ0=0;MQRankSum=0.963;QD=9.80;ReadPosRankSum=-0.923 GT:AD:DP:GQ:PL 0/0:112,0:112:99:0,298,3803 0/0:111,0:111:99:0,286,3622 0/0:95,1:96:99:0,233,3352 0/0:248,0:248:99:0,638,8656 0/0:192,0:192:99:0,500,6760 0/0:165,0:165:99:0,433,5868 0/0:128,0:128:99:0,328,4461 0/0:144,0:144:99:0,370,4880 0/0:96,0:96:99:0,265,3377 0/0:85,0:85:99:0,217,2766 0/0:104,0:104:99:0,289,3681 0/0:96,0:97:99:0,250,3245 0/0:94,0:94:99:0,244,3078 0/0:113,0:113:99:0,313,3987 0/0:238,0:239:99:0,623,7923 0/0:108,0:108:99:0,295,3706 0/0:105,0:105:99:0,277,3511 0/0:91,0:92:99:0,253,3163 0/0:147,0:147:99:0,394,4996 0/0:182,0:183:99:0,491,6266 0/0:153,1:154:99:0,358,4895 0/0:114,0:114:99:0,295,3751 0/0:235,0:235:99:0,605,8298 0/0:115,0:115:99:0,295,3942 0/0:156,0:156:99:0,388,5262 0/0:128,0:130:99:0,319,4352 0/0:71,0:71:99:0,190,2425 0/0:104,0:105:99:0,283,3593 0/1:42,28:70:99:732,0,1122 0/0:92,0:92:99:0,250,3213 0/0:96,0:96:99:0,262,3310 0/0:161,0:162:99:0,418,5329 0/0:127,1:128:99:0,312,4266 0/0:83,0:83:99:0,223,2820 0/0:97,0:97:99:0,259,3296 0/0:113,0:113:99:0,301,3847 0/0:156,0:156:99:0,430,5423 0/0:100,0:100:99:0,280,3507 0/0:105,0:105:99:0,274,3490 0/0:111,0:111:99:0,295,3776 0/0:94,0:94:99:0,253,3168 0/0:81,0:81:99:0,232,2869 1 43906896 . A G 84020.04 . 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T C 5021.72 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.646;DP=6239;DS;Dels=0.00;FS=11.102;HRun=0;HaplotypeScore=4.6527;InbreedingCoeff=-0.0244;MQ=59.44;MQ0=1;MQRankSum=0.609;QD=14.23;ReadPosRankSum=3.828 GT:AD:DP:GQ:PL 0/0:109,0:109:99:0,307,3735 0/0:125,0:125:99:0,361,4338 0/0:111,0:111:99:0,310,3720 0/0:250,0:250:99:0,701,8561 0/0:227,0:229:99:0,632,7695 0/1:98,96:194:99:2687,0,2884 0/1:74,83:159:99:2335,0,2129 0/0:163,0:165:99:0,478,5852 0/0:134,0:134:99:0,376,4557 0/0:101,0:101:99:0,292,3476 0/0:118,0:119:99:0,325,3857 0/0:119,0:119:99:0,343,4128 0/0:95,0:96:99:0,265,3187 0/0:157,0:157:99:0,427,5216 0/0:250,0:250:99:0,692,8226 0/0:114,0:114:99:0,322,3838 0/0:118,0:119:99:0,334,4084 0/0:147,0:149:99:0,415,5007 0/0:176,0:179:99:0,478,5675 0/0:223,0:223:99:0,638,7605 0/0:169,0:169:99:0,457,5461 0/0:131,0:131:99:0,361,4348 0/0:250,0:250:99:0,710,8625 0/0:145,0:147:99:0,415,5077 0/0:174,0:175:99:0,488,6001 0/0:166,0:166:99:0,460,5686 0/0:106,0:106:99:0,298,3535 0/0:118,0:118:99:0,334,4000 0/0:93,0:94:99:0,268,3213 0/0:110,0:110:99:0,301,3644 0/0:120,0:120:99:0,343,4074 0/0:176,0:176:99:0,496,6005 0/0:128,0:129:99:0,373,4389 0/0:124,0:124:99:0,343,4167 0/0:132,0:132:99:0,373,4485 0/0:111,0:112:99:0,304,3716 0/0:177,0:177:99:0,466,5612 0/0:148,0:149:99:0,430,5131 0/0:149,0:149:99:0,418,5002 0/0:134,0:134:99:0,388,4604 0/0:124,0:124:99:0,352,4259 0/0:145,0:145:99:0,397,4754 1 43917888 . C G 1031.78 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.398;DP=1377;Dels=0.00;FS=6.715;HRun=0;HaplotypeScore=0.6639;InbreedingCoeff=-0.0244;MQ=58.98;MQ0=0;MQRankSum=-0.003;QD=10.75;ReadPosRankSum=-1.158 GT:AD:DP:GQ:PL 0/0:30,0:30:87.25:0,87,1073 0/0:32,0:32:90.27:0,90,1098 0/0:34,0:34:96.29:0,96,1197 0/0:22,0:22:63.20:0,63,832 0/0:28,0:28:81.26:0,81,1077 0/0:28,0:28:72.23:0,72,961 0/0:16,0:16:45.14:0,45,597 0/0:30,0:30:81.24:0,81,1041 0/0:38,0:38:96.29:0,96,1231 0/0:23,0:23:66.20:0,66,821 0/0:24,0:24:66.21:0,66,841 0/0:27,0:27:75.23:0,75,937 0/0:20,0:20:51.14:0,51,637 0/0:33,0:33:90.28:0,90,1150 0/0:100,0:101:99:0,256,3220 0/0:28,0:28:78.25:0,78,994 0/0:45,0:45:99:0,126,1603 0/0:22,0:22:60.19:0,60,762 0/0:58,0:58:99:0,162,1988 0/0:65,0:65:99:0,163,2105 0/1:26,24:50:99:567,0,778 0/0:32,0:32:81.25:0,81,1043 0/0:27,0:27:72.24:0,72,978 0/0:19,0:19:57.18:0,57,737 0/0:26,0:26:69.23:0,69,927 0/0:17,0:17:45.13:0,45,597 0/0:28,0:28:78.23:0,78,964 0/0:25,0:25:69.22:0,69,882 0/0:38,0:38:96.30:0,96,1234 0/0:36,0:36:93.30:0,93,1205 0/0:27,0:28:78.24:0,78,973 0/1:25,21:46:99:527,0,762 0/0:37,0:37:99:0,105,1285 0/0:29,0:29:84.25:0,84,1040 0/0:34,0:34:93.28:0,93,1158 0/0:31,0:31:84.26:0,84,1066 0/0:31,0:31:84.25:0,84,1029 0/0:28,0:29:81.23:0,81,967 0/0:34,0:34:96.30:0,96,1223 0/0:28,0:28:81.23:0,81,997 0/0:27,0:27:72.22:0,72,902 0/0:21,0:21:57.19:0,57,748 1 43919081 . T C 123.72 . AC=5;AF=0.061;AN=82;BaseQRankSum=0.675;DP=189;Dels=0.00;FS=3.443;HRun=0;HaplotypeScore=0.1244;InbreedingCoeff=0.1726;MQ=58.91;MQ0=0;MQRankSum=0.655;QD=8.25;ReadPosRankSum=0.339 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,174 0/1:3,2:5:55.82:56,0,89 0/1:2,2:4:59.35:64,0,59 0/0:12,0:12:36.11:0,36,425 0/0:7,0:7:21.06:0,21,253 ./. 0/0:4,0:4:12.04:0,12,144 0/0:4,0:4:12.03:0,12,140 0/1:0,2:2:1.76:45,3,0 0/0:4,0:4:12.03:0,12,135 0/1:0,1:1:1.76:32,3,0 0/0:3,0:3:6.02:0,6,80 0/0:1,0:1:3.01:0,3,36 0/0:3,0:3:9.03:0,9,105 0/0:13,0:13:36.11:0,36,435 0/0:4,0:4:9.02:0,9,101 0/0:3,0:3:9.02:0,9,100 0/0:4,0:4:12.04:0,12,143 0/0:4,0:4:12.04:0,12,145 0/0:6,0:6:18.06:0,18,216 0/0:4,0:4:12.04:0,12,144 0/0:2,0:2:6.02:0,6,66 0/0:11,0:11:33.10:0,33,394 0/0:4,0:4:12.04:0,12,140 0/0:6,0:6:18.05:0,18,204 0/0:3,0:3:9.01:0,9,90 0/1:2,1:3:27.10:27,0,62 0/0:1,0:1:3.01:0,3,35 0/0:2,0:2:6.02:0,6,71 0/0:8,0:8:18.05:0,18,204 0/0:3,0:3:9.03:0,9,108 0/0:12,0:12:36.11:0,36,422 0/0:4,0:4:12.03:0,12,134 0/0:6,0:6:18.05:0,18,214 0/0:7,0:7:21.06:0,21,243 0/0:6,0:6:18.05:0,18,210 0/0:6,0:6:15.04:0,15,180 0/0:3,0:3:9.02:0,9,99 0/0:5,0:5:12.03:0,12,144 0/0:2,0:2:6.02:0,6,72 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,35 1 44054461 . G A 486.43 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.837;DP=1415;Dels=0.00;FS=5.708;HRun=0;HaplotypeScore=1.0741;InbreedingCoeff=-0.0244;MQ=59.18;MQ0=0;MQRankSum=1.957;QD=11.31;ReadPosRankSum=-0.267 GT:AD:DP:GQ:PL 0/0:23,0:23:60.17:0,60,705 0/0:29,0:29:81.23:0,81,943 0/0:28,0:28:78.20:0,78,878 0/0:64,0:64:99:0,178,2228 0/0:79,0:79:99:0,220,2757 0/0:41,0:41:99:0,108,1321 0/0:29,0:29:81.23:0,81,981 0/0:49,0:50:99:0,123,1541 0/0:38,0:38:99:0,102,1208 0/0:31,0:31:81.21:0,81,913 0/0:12,0:12:33.08:0,33,374 0/0:30,0:30:87.24:0,87,1003 0/0:16,0:16:42.12:0,42,512 0/0:37,0:37:99:0,99,1193 0/0:79,0:80:99:0,211,2506 0/0:23,0:23:69.15:0,69,767 0/0:28,0:28:78.22:0,78,943 0/0:21,0:21:60.13:0,60,661 0/0:48,0:50:99:0,120,1377 0/0:46,0:46:99:0,123,1464 0/0:44,0:45:99:0,126,1478 0/0:29,0:29:78.17:0,78,863 0/0:70,0:70:99:0,190,2408 0/0:41,0:41:99:0,114,1409 0/0:36,0:36:93.27:0,93,1154 0/0:24,0:24:66.21:0,66,852 0/0:26,0:26:72.17:0,72,805 0/0:21,0:21:57.16:0,57,682 0/0:21,0:21:60.17:0,60,697 0/1:9,8:17:99:248,0,250 0/1:15,11:26:99:301,0,419 0/0:44,0:44:99:0,111,1344 0/0:28,0:28:78.17:0,78,853 0/0:22,0:23:63.18:0,63,727 0/0:23,0:23:63.17:0,63,741 0/0:20,0:20:51.12:0,51,555 0/0:27,0:27:78.21:0,78,907 0/0:31,2:33:39.46:0,39,881 0/0:26,0:26:75.20:0,75,846 0/0:29,0:29:81.23:0,81,936 0/0:29,0:30:78.21:0,78,914 0/0:21,0:21:60.13:0,60,674 1 44071221 . G A 35591.54 . AC=64;AF=0.762;AN=84;BaseQRankSum=-23.746;DP=1632;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.0015;InbreedingCoeff=-0.0500;MQ=58.94;MQ0=0;MQRankSum=9.866;QD=23.29;ReadPosRankSum=-0.270 GT:AD:DP:GQ:PL 1/1:0,36:36:93.26:1098,93,0 1/1:0,30:31:84.24:976,84,0 1/1:0,23:23:63.19:754,63,0 0/1:47,47:94:99:1225,0,1552 1/1:1,63:64:99:2046,138,0 0/0:58,0:58:99:0,150,2032 0/1:32,36:68:99:983,0,903 0/0:46,0:46:99:0,129,1732 1/1:0,38:38:99:1230,105,0 1/1:0,32:32:84.24:991,84,0 0/1:14,11:25:99:310,0,323 1/1:1,23:24:63.19:756,63,0 0/1:12,7:19:99:200,0,334 0/1:18,21:39:99:598,0,541 0/1:39,36:76:99:874,0,1063 1/1:0,25:25:72.18:804,72,0 0/1:17,16:33:99:422,0,524 1/1:0,18:18:51.14:589,51,0 1/1:0,48:48:99:1467,126,0 0/1:20,19:39:99:482,0,580 1/1:0,48:49:99:1559,132,0 0/1:10,15:25:99:394,0,299 0/1:39,56:95:99:1467,0,1146 1/1:0,41:41:99:1282,108,0 1/1:1,50:51:99:1627,138,0 1/1:1,45:46:90.63:1485,91,0 1/1:0,28:28:78.20:897,78,0 1/1:0,33:33:96.26:1100,96,0 1/1:0,21:21:60.17:697,60,0 0/1:16,12:28:99:339,0,475 0/1:13,9:22:99:259,0,361 1/1:0,46:46:99:1451,120,0 0/1:24,16:40:99:413,0,762 1/1:1,28:29:46.45:903,46,0 1/1:0,29:29:84.25:988,84,0 1/1:0,27:27:78.21:908,78,0 0/1:25,25:51:99:604,0,758 1/1:0,23:23:69.13:748,69,0 0/1:11,17:28:99:503,0,288 1/1:0,24:24:60.15:709,60,0 0/1:15,10:25:99:271,0,422 1/1:0,35:35:99:1183,102,0 1 44118894 . C A 3207.88 . 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A C 235.82 . AC=9;AF=0.107;AN=84;BaseQRankSum=-10.562;DP=1371;Dels=0.02;FS=301.976;HRun=4;HaplotypeScore=2.6198;InbreedingCoeff=-0.1296;MQ=57.92;MQ0=0;MQRankSum=0.810;QD=0.89;ReadPosRankSum=-9.732 GT:AD:DP:GQ:PL 0/1:12,12:24:17.12:17,0,379 0/0:12,8:20:11.40:0,11,366 0/0:15,13:28:16.59:0,17,513 0/0:40,30:70:7.96:0,8,1271 0/1:25,27:52:78.04:78,0,827 0/1:20,12:32:26.54:27,0,583 0/0:16,11:27:17.72:0,18,576 0/0:19,15:34:54.15:0,54,634 0/1:15,14:29:94.81:95,0,413 0/0:22,10:32:17.96:0,18,744 0/0:17,14:31:17.55:0,18,502 0/0:15,9:24:42.13:0,42,515 0/0:12,7:19:36.11:0,36,429 0/0:18,6:24:54.16:0,54,641 0/0:52,5:57:99:0,150,1767 0/0:17,8:25:48.12:0,48,572 0/0:15,7:23:42.12:0,42,492 0/0:18,5:23:18.66:0,19,552 0/1:32,17:49:50.14:50,0,994 0/0:39,22:61:56.30:0,56,1281 0/0:41,15:56:99:0,99,1146 0/0:16,16:32:48.14:0,48,578 0/0:34,29:63:9.76:0,10,1087 0/0:15,14:29:15.65:0,16,549 0/0:21,14:35:29.76:0,30,720 0/0:17,13:30:23.57:0,24,584 0/0:14,8:22:39.11:0,39,454 0/0:12,13:25:4.23:0,4,344 0/1:9,8:17:33.01:33,0,254 0/0:12,7:19:36.10:0,36,421 0/1:12,9:21:25.08:25,0,310 0/0:29,23:52:77.60:0,78,921 0/0:32,13:45:41.48:0,41,1002 0/0:21,3:24:35.50:0,35,671 0/1:11,10:21:22.97:23,0,352 0/0:25,5:31:75.12:0,75,872 0/0:25,7:32:39.58:0,40,767 0/0:13,10:23:36.11:0,36,425 0/0:16,7:23:48.13:0,48,564 0/1:12,9:21:14:14,0,393 0/0:16,6:22:19.47:0,19,496 0/0:17,6:23:51.15:0,51,607 1 44461822 . C T 612.68 . AC=4;AF=0.048;AN=84;BaseQRankSum=-3.775;DP=608;Dels=0.00;FS=1.075;HRun=0;HaplotypeScore=1.0759;InbreedingCoeff=-0.0516;MQ=58.26;MQ0=0;MQRankSum=0.719;QD=11.78;ReadPosRankSum=0.630 GT:AD:DP:GQ:PL 0/0:15,0:15:45.14:0,45,552 0/0:8,0:8:21.07:0,21,262 0/0:8,0:8:24.07:0,24,297 0/0:25,0:25:72.23:0,72,933 0/0:17,0:17:51.15:0,51,652 0/0:20,0:20:45.14:0,45,598 0/0:13,0:13:33.10:0,33,423 0/0:24,0:24:72.22:0,72,922 0/0:9,0:9:24.07:0,24,286 0/0:6,0:6:18.06:0,18,230 0/1:4,3:7:86.42:86,0,134 0/0:12,0:12:30.10:0,30,386 0/0:10,0:10:21.06:0,21,271 0/0:7,0:7:21.06:0,21,260 0/0:39,0:39:99:0,111,1383 0/0:13,0:13:36.12:0,36,463 0/0:14,0:14:39.10:0,39,483 0/0:9,0:9:24.08:0,24,305 0/0:25,0:25:69.20:0,69,847 0/0:17,0:17:45.13:0,45,565 0/0:21,0:21:57.18:0,57,718 0/0:12,0:12:33.11:0,33,423 0/0:18,0:18:51.16:0,51,666 0/0:12,0:12:36.11:0,36,450 0/0:17,0:17:48.15:0,48,627 0/0:14,0:14:39.13:0,39,519 0/0:14,0:14:36.10:0,36,436 0/0:13,0:13:33.10:0,33,405 0/0:18,0:18:51.16:0,51,642 0/0:12,0:12:30.10:0,30,381 0/0:14,0:14:39.11:0,39,465 0/1:10,13:23:99:354,0,283 0/0:14,0:14:42.13:0,42,528 0/0:11,0:11:33.11:0,33,422 0/0:14,0:14:33.08:0,33,392 0/0:13,0:13:39.12:0,39,494 0/1:3,7:11:46.05:214,0,46 0/1:9,2:11:45.50:46,0,267 0/0:18,0:18:48.14:0,48,603 0/0:14,0:14:42.13:0,42,521 0/0:5,0:5:12.04:0,12,154 0/0:11,0:11:24.07:0,24,303 1 45224901 . G A 585.51 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.845;DP=1827;Dels=0.00;FS=1.772;HRun=2;HaplotypeScore=1.1364;InbreedingCoeff=-0.0120;MQ=59.21;MQ0=0;MQRankSum=1.863;QD=18.30;ReadPosRankSum=-1.409 GT:AD:DP:GQ:PL 0/0:44,1:45:91.83:0,92,1498 0/0:32,0:32:93.30:0,93,1191 0/1:12,20:32:99:632,0,354 0/0:78,0:78:99:0,223,2970 0/0:92,0:92:99:0,256,3435 0/0:47,0:47:99:0,132,1759 0/0:57,0:57:99:0,166,2218 0/0:56,0:56:99:0,160,2133 0/0:33,0:33:99:0,99,1234 0/0:30,0:30:81.26:0,81,1059 0/0:32,0:32:87.28:0,87,1123 0/0:39,0:39:99:0,108,1394 0/0:17,0:17:48.15:0,48,613 0/0:38,0:38:99:0,111,1424 0/0:114,0:114:99:0,313,3973 0/0:22,0:22:66.21:0,66,838 0/0:37,0:37:99:0,102,1300 0/0:29,0:29:87.27:0,87,1090 0/0:49,0:49:99:0,126,1618 0/0:57,0:57:99:0,141,1833 0/0:59,0:59:99:0,153,1958 0/0:37,0:37:99:0,105,1303 0/0:92,0:92:99:0,256,3448 0/0:35,0:35:93.31:0,93,1281 0/0:47,0:47:99:0,123,1673 0/0:48,0:48:99:0,132,1730 0/0:21,0:21:63.19:0,63,764 0/0:37,0:37:99:0,102,1286 0/0:32,0:32:93.29:0,93,1167 0/0:35,0:35:99:0,99,1228 0/0:20,0:20:57.17:0,57,702 0/0:57,0:57:99:0,150,1939 0/0:38,0:38:99:0,111,1352 0/0:37,0:37:99:0,108,1380 0/0:21,0:21:60.19:0,60,763 0/0:32,0:32:93.29:0,93,1177 0/0:66,0:67:99:0,175,2206 0/0:34,0:34:93.28:0,93,1177 0/0:48,0:48:99:0,138,1727 0/0:31,0:32:87.25:0,87,1080 0/0:26,0:26:72.23:0,72,923 0/0:36,0:36:99:0,105,1335 1 45224998 . A C 3946.46 . AC=8;AF=0.095;AN=84;BaseQRankSum=9.079;DP=2362;Dels=0.00;FS=2.689;HRun=0;HaplotypeScore=1.4985;InbreedingCoeff=-0.1053;MQ=59.30;MQ0=0;MQRankSum=-0.320;QD=13.99;ReadPosRankSum=-3.260 GT:AD:DP:GQ:PL 0/1:21,26:47:99:690,0,591 0/1:21,26:47:99:625,0,615 0/0:44,0:44:99:0,120,1439 0/0:152,1:153:99:0,394,4850 0/0:125,0:126:99:0,334,4157 0/0:88,0:88:99:0,229,2911 0/0:69,0:69:99:0,184,2287 0/0:85,0:85:99:0,214,2656 0/0:44,0:44:99:0,123,1478 0/0:30,0:30:90.26:0,90,1047 0/0:32,0:32:90.26:0,90,1074 0/0:42,0:42:99:0,123,1484 0/1:21,14:35:99:421,0,585 0/0:46,0:46:99:0,132,1558 0/0:133,0:133:99:0,352,4191 0/0:44,0:44:99:0,123,1444 0/0:47,0:47:99:0,129,1524 0/0:36,0:36:99:0,102,1219 0/0:64,0:64:99:0,168,2003 0/0:54,0:54:99:0,141,1718 0/0:63,0:64:99:0,166,2027 0/0:43,1:44:81.78:0,82,1371 0/0:153,0:153:99:0,385,4743 0/0:66,0:66:99:0,169,2140 0/0:90,0:91:99:0,226,2805 0/0:65,0:65:99:0,181,2175 0/1:8,13:21:99:390,0,196 0/1:20,17:37:99:462,0,611 0/0:34,0:34:96.29:0,96,1151 0/1:24,16:40:99:461,0,719 0/1:13,13:26:99:351,0,399 0/0:45,0:45:99:0,120,1441 0/0:44,0:44:99:0,126,1480 0/0:48,0:48:99:0,141,1679 0/1:12,17:29:99:547,0,331 0/0:48,0:48:99:0,138,1640 0/0:47,1:48:99:0,132,1562 0/0:29,1:30:46.45:0,46,922 0/0:45,0:45:99:0,129,1507 0/0:39,0:39:99:0,108,1314 0/0:38,0:38:99:0,105,1252 0/0:38,0:38:99:0,108,1301 1 45250382 . T G 84.21 . 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G C 3574.34 . AC=8;AF=0.095;AN=84;BaseQRankSum=0.562;DP=3275;Dels=0.00;FS=15.535;HRun=3;HaplotypeScore=3.7530;InbreedingCoeff=-0.1053;MQ=58.88;MQ0=0;MQRankSum=0.722;QD=11.07;ReadPosRankSum=-2.149 GT:AD:DP:GQ:PL 0/1:22,15:37:99:355,0,649 0/1:24,16:40:99:402,0,643 0/0:46,0:47:99:0,120,1381 0/0:210,1:213:99:0,566,6944 0/0:166,0:166:99:0,439,5412 0/0:153,0:153:99:0,388,4720 0/0:116,0:116:99:0,298,3709 0/0:119,1:120:99:0,316,3816 0/0:46,0:46:99:0,126,1427 0/0:47,1:48:99:0,126,1440 0/0:36,0:36:99:0,102,1150 0/0:51,0:51:99:0,135,1542 0/1:15,13:28:99:368,0,370 0/0:47,0:47:99:0,132,1503 0/0:159,0:161:99:0,409,4635 0/0:51,0:51:99:0,138,1556 0/0:55,0:55:99:0,153,1772 0/0:46,0:46:99:0,111,1303 0/0:93,0:93:99:0,250,2824 0/0:83,0:83:99:0,220,2476 0/0:105,0:105:99:0,280,3183 0/0:73,0:73:99:0,205,2324 0/0:210,1:211:99:0,557,6847 0/0:110,1:111:99:0,234,3271 0/0:123,0:123:99:0,307,3754 0/0:130,0:130:99:0,331,4106 0/1:17,8:25:99:166,0,443 0/1:26,18:44:99:479,0,629 0/0:60,0:60:99:0,159,1789 0/1:26,26:52:99:703,0,566 0/1:22,26:48:99:622,0,523 0/0:113,0:114:99:0,283,3212 0/0:65,0:65:99:0,177,1951 0/0:44,0:44:99:0,126,1402 0/1:30,18:48:99:481,0,792 0/0:54,0:54:99:0,144,1682 0/0:82,0:84:99:0,214,2430 0/0:56,1:57:99:0,138,1598 0/0:48,0:48:99:0,129,1453 0/0:44,0:44:99:0,117,1328 0/0:50,0:50:99:0,135,1579 0/0:47,0:47:99:0,132,1491 1 45295289 . C A 1361.94 . 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G C 475.91 . 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T G 91.24 . 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G A 40206.48 . 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G A 1251.91 . 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G C 58602.79 . 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C T 7217.30 . 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C T 20807.63 . 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A C 20.73 . 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A G 14950.01 . 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T C 25852.70 . 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T G 57177.44 . 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C T 2496.09 . 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T C 864.13 . 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A G 29966.59 . 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A G 2202.62 . 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T C 30211.05 . 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A G 707.07 . 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C T 2007.76 . 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C T 21803.02 . 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G A 91.72 . 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C G 655.85 . 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C T 7245.75 . AC=29;AF=0.345;AN=84;BaseQRankSum=-10.243;DP=701;Dels=0.00;FS=0.627;HRun=1;HaplotypeScore=0.3560;InbreedingCoeff=0.3150;MQ=58.21;MQ0=0;MQRankSum=-0.083;QD=20.41;ReadPosRankSum=-1.182 GT:AD:DP:GQ:PL 1/1:0,13:13:39.12:479,39,0 1/1:0,15:15:45.13:538,45,0 1/1:0,12:12:36.11:439,36,0 0/0:34,0:34:90.29:0,90,1203 0/1:21,14:35:99:360,0,708 0/0:26,0:26:75.24:0,75,1006 0/0:22,0:22:57.19:0,57,770 0/0:11,0:11:33.10:0,33,414 0/1:5,8:13:99:222,0,152 0/0:13,0:13:39.12:0,39,484 0/1:5,9:14:99:274,0,117 0/0:11,0:11:30.09:0,30,366 0/0:13,0:13:36.11:0,36,462 0/0:12,0:12:36.11:0,36,450 0/1:17,21:38:99:611,0,521 1/1:0,13:13:36.08:415,36,0 0/0:10,0:10:30.09:0,30,366 0/1:4,2:6:53.95:54,0,130 0/1:9,11:20:99:258,0,276 0/0:13,0:13:36.11:0,36,453 0/1:9,12:21:99:294,0,260 0/0:11,0:11:33.10:0,33,397 0/0:25,0:25:63.21:0,63,856 0/0:18,0:18:45.15:0,45,609 0/0:22,0:22:57.18:0,57,755 0/0:17,0:17:42.14:0,42,561 0/0:9,0:9:27.08:0,27,338 0/1:5,5:10:99:149,0,126 0/0:11,0:11:30.10:0,30,389 1/1:0,14:14:39.10:481,39,0 0/1:8,10:18:99:300,0,220 0/1:11,7:18:99:186,0,333 1/1:0,20:20:57.17:695,57,0 0/1:9,8:17:99:249,0,202 0/0:17,0:17:42.11:0,42,524 0/1:12,7:19:99:171,0,374 0/0:14,0:14:42.13:0,42,515 0/0:19,0:19:51.16:0,51,642 0/0:18,0:18:45.13:0,45,548 1/1:0,15:15:39.11:475,39,0 0/1:6,6:12:99:165,0,164 1/1:0,12:12:36.11:431,36,0 1 46871746 . G A 3045.68 . 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G A 1665.27 . 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G A 97444.48 . 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G A 1013.31 . 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C T 3016.82 . 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C T 182.12 . 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T TG 5142.02 . 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T G 4483.59 . 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G A 2363.71 . 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G A 26266.95 . AC=41;AF=0.488;AN=84;BaseQRankSum=-32.514;DP=1931;Dels=0.00;FS=0.915;HRun=0;HaplotypeScore=0.8159;InbreedingCoeff=-0.0959;MQ=58.59;MQ0=0;MQRankSum=-0.563;QD=18.09;ReadPosRankSum=-1.878 GT:AD:DP:GQ:PL 0/0:29,0:29:81.26:0,81,1039 0/1:20,15:35:99:419,0,586 1/1:0,28:28:72.21:870,72,0 0/1:50,32:82:99:818,0,1684 0/1:43,33:76:99:884,0,1346 0/0:73,0:73:99:0,208,2846 0/1:31,31:62:99:850,0,1005 0/1:31,32:63:99:860,0,1014 1/1:0,21:21:60.18:701,60,0 0/1:14,13:27:99:347,0,460 1/1:0,28:28:84.25:989,84,0 0/1:22,12:34:99:304,0,659 1/1:0,39:39:99:1250,105,0 0/1:14,18:32:99:457,0,453 0/1:70,55:125:99:1511,0,2089 0/1:11,11:22:99:291,0,328 0/1:12,14:26:99:426,0,351 0/0:31,0:31:90.28:0,90,1136 0/1:27,24:51:99:657,0,726 0/1:25,32:57:99:854,0,765 0/1:31,25:56:99:632,0,988 0/0:36,0:37:99:0,102,1295 0/0:91,0:91:99:0,256,3538 0/1:30,36:66:99:1020,0,950 1/1:0,87:87:99:2841,235,0 0/0:69,0:69:99:0,196,2677 0/1:12,15:27:99:443,0,381 0/0:35,0:35:93.29:0,93,1182 1/1:0,23:23:66.20:783,66,0 0/1:14,17:31:99:498,0,406 0/1:14,18:32:99:523,0,378 0/1:27,35:62:99:955,0,807 0/1:19,16:35:99:408,0,590 0/0:42,0:42:99:0,117,1479 0/1:19,13:32:99:373,0,514 0/0:37,0:37:99:0,108,1373 1/1:0,48:48:99:1579,132,0 1/1:0,35:35:99:1196,102,0 1/1:0,39:39:99:1303,108,0 0/0:35,0:35:99:0,99,1264 0/1:11,18:29:99:549,0,304 0/1:18,23:42:99:676,0,526 1 47840592 . A G 1404.41 . AC=1;AF=0.012;AN=84;BaseQRankSum=11.200;DP=2407;Dels=0.00;FS=5.325;HRun=0;HaplotypeScore=0.6040;InbreedingCoeff=-0.0120;MQ=59.26;MQ0=0;MQRankSum=0.130;QD=14.94;ReadPosRankSum=0.872 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,111,1405 0/0:44,0:45:99:0,120,1473 0/0:43,0:43:99:0,114,1446 0/0:111,0:111:99:0,295,3786 0/0:99,0:99:99:0,265,3471 0/0:105,0:105:99:0,283,3772 0/0:90,0:90:99:0,235,3081 0/1:45,49:94:99:1451,0,1319 0/0:48,0:48:99:0,135,1674 0/0:49,0:49:99:0,135,1671 0/0:31,0:31:81.26:0,81,1041 0/0:51,0:51:99:0,141,1787 0/0:37,0:37:99:0,102,1255 0/0:39,0:39:99:0,99,1281 0/0:166,0:167:99:0,406,5203 0/0:48,0:48:99:0,126,1605 0/0:36,0:36:90.28:0,90,1145 0/0:47,1:48:99:0,135,1670 0/0:45,0:45:99:0,117,1501 0/0:51,0:51:99:0,126,1628 0/0:44,0:44:99:0,117,1489 0/0:19,0:19:48.15:0,48,601 0/0:116,0:116:99:0,301,3955 0/0:78,0:78:99:0,205,2707 0/0:93,0:93:99:0,250,3250 0/0:89,0:89:99:0,229,3013 0/0:26,0:26:69.22:0,69,875 0/0:46,0:46:99:0,129,1598 0/0:43,0:43:99:0,114,1432 0/0:36,0:36:87.27:0,87,1109 0/0:43,0:43:99:0,126,1556 0/0:43,0:43:99:0,105,1351 0/0:32,0:32:81.26:0,81,1036 0/0:49,0:49:99:0,132,1652 0/0:52,0:52:99:0,141,1769 0/0:59,0:59:99:0,159,1971 0/0:33,0:33:87.27:0,87,1090 0/0:47,0:47:99:0,129,1613 0/0:37,0:37:99:0,108,1342 0/0:48,0:48:99:0,132,1659 0/0:50,0:50:99:0,135,1677 0/0:46,0:46:99:0,126,1577 1 48694563 . G T 1703.48 . AC=23;AF=0.274;AN=84;BaseQRankSum=-25.964;DP=2851;Dels=0.00;FS=1848.015;HRun=2;HaplotypeScore=1.6211;InbreedingCoeff=-0.3851;MQ=58.69;MQ0=0;MQRankSum=-0.265;QD=0.97;ReadPosRankSum=-21.987 GT:AD:DP:GQ:PL 0/1:40,17:57:72.15:72,0,1063 0/1:26,18:44:67.84:68,0,610 0/0:30,5:35:19.90:0,20,777 0/1:110,76:186:99:266,0,2926 0/1:95,67:162:99:229,0,2337 0/1:68,37:105:14.93:15,0,1816 0/1:63,33:96:17.94:18,0,1785 0/1:68,43:112:99:120,0,1699 0/1:35,16:51:79.53:80,0,850 0/1:24,18:42:74.30:74,0,602 0/0:36,15:51:62.16:0,62,954 0/1:28,16:44:62.53:63,0,837 0/1:17,13:30:17.02:17,0,457 0/0:37,10:47:12.21:0,12,1080 0/1:110,44:155:77.46:77,0,2945 0/1:28,21:49:27.49:27,0,770 0/0:35,8:43:67.68:0,68,1081 0/0:33,12:45:42.51:0,43,823 0/1:34,25:59:99:104,0,937 0/0:45,19:64:5.65:0,6,1153 0/0:60,20:80:32.58:0,33,1757 0/0:36,10:46:57.55:0,58,931 0/1:123,81:204:99:220,0,3680 0/0:65,37:102:19.79:0,20,1803 0/0:70,42:112:35.01:0,35,1875 0/0:59,25:84:61.23:0,61,1563 0/1:33,11:44:47.79:48,0,809 0/0:41,9:50:50.89:0,51,1070 0/0:28,14:42:35.83:0,36,883 0/1:31,13:44:73.02:73,0,739 0/0:37,13:50:23.40:0,23,984 0/0:42,15:57:75.54:0,76,1211 0/0:38,16:54:33.26:0,33,1125 0/1:26,19:45:45.20:45,0,687 0/1:31,14:45:33.82:34,0,712 0/1:41,11:52:83.39:83,0,1133 0/1:33,14:47:80.58:81,0,926 0/1:29,10:39:35:35,0,677 0/0:30,17:47:80.59:0,81,918 0/1:26,15:41:31.24:31,0,668 0/0:29,12:41:8.42:0,8,758 0/0:34,14:48:39.91:0,40,977 1 48713130 . A G 5.53 . AC=2;AF=0.024;AN=84;BaseQRankSum=-20.902;DP=2942;Dels=0.00;FS=1226.022;HRun=2;HaplotypeScore=0.9332;InbreedingCoeff=-0.0314;MQ=59.12;MQ0=0;MQRankSum=1.543;QD=0.05;ReadPosRankSum=-19.273 GT:AD:DP:GQ:PL 0/0:57,11:68:61.95:0,62,1837 0/0:47,10:57:99:0,110,1577 0/0:47,13:60:38.42:0,38,1492 0/0:94,26:120:99:0,116,2941 0/0:80,23:103:99:0,173,2737 0/0:86,18:104:99:0,253,3124 0/0:79,17:96:99:0,231,2843 0/0:55,12:67:99:0,124,1908 0/0:39,5:44:82.78:0,83,1287 0/0:44,11:55:95.79:0,96,1444 0/1:37,15:52:37.63:38,0,1099 0/0:34,11:46:13.89:0,14,1082 0/0:40,10:50:99:0,104,1217 0/0:44,10:54:81.73:0,82,1280 0/0:142,36:179:99:0,279,4526 0/0:45,10:55:95.46:0,95,1386 0/0:53,8:61:59.52:0,60,1708 0/0:41,10:51:21.84:0,22,1093 0/0:54,12:66:86.42:0,86,1822 0/0:80,16:96:99:0,196,2621 0/0:50,16:67:17.39:0,17,1577 0/0:47,13:60:49.64:0,50,1478 0/0:107,22:129:99:0,216,3516 0/0:61,8:69:99:0,157,2142 0/0:95,14:109:99:0,253,3322 0/0:47,17:64:70.38:0,70,1465 0/0:38,9:47:47.29:0,47,1293 0/0:40,11:51:0.19:0,0,1193 0/0:44,6:50:99:0,120,1436 0/0:48,6:54:99:0,116,1630 0/0:54,13:67:93.11:0,93,1666 0/0:55,10:65:99:0,115,1633 0/0:44,8:52:99:0,122,1408 0/0:50,10:60:99:0,145,1744 0/0:62,9:71:99:0,175,2145 0/0:48,8:56:99:0,119,1608 0/0:59,18:78:25.85:0,26,1789 0/0:43,6:50:95.85:0,96,1415 0/0:37,11:48:38.17:0,38,1107 0/0:59,20:79:86.89:0,87,1904 0/1:41,15:56:28.38:28,0,1354 0/0:61,15:76:99:0,106,2064 1 48713206 . T C 4670.94 . AC=5;AF=0.060;AN=84;BaseQRankSum=4.236;DP=3169;DS;Dels=0.00;FS=3.201;HRun=0;HaplotypeScore=1.1987;InbreedingCoeff=-0.0633;MQ=59.28;MQ0=0;MQRankSum=1.664;QD=12.87;ReadPosRankSum=-0.587 GT:AD:DP:GQ:PL 0/1:40,25:65:99:684,0,1218 0/0:66,0:66:99:0,169,2101 0/0:71,0:71:99:0,193,2397 0/0:115,0:115:99:0,298,3810 0/0:103,0:103:99:0,274,3560 0/0:101,0:101:99:0,274,3574 0/0:104,0:104:99:0,271,3548 0/0:78,0:78:99:0,202,2630 0/0:48,0:48:99:0,129,1601 0/0:65,0:65:99:0,184,2264 0/0:70,0:70:99:0,190,2356 0/0:50,0:50:99:0,138,1714 0/0:51,0:51:99:0,135,1678 0/0:57,0:57:99:0,156,1949 0/0:197,0:197:99:0,515,6438 0/0:67,0:67:99:0,184,2268 0/0:60,0:60:99:0,162,2023 0/0:62,0:62:99:0,169,2069 0/1:43,35:78:99:953,0,1251 0/1:44,43:87:99:1184,0,1221 0/0:82,0:82:99:0,211,2677 0/0:52,0:52:99:0,135,1680 0/0:140,0:140:99:0,370,4756 0/0:101,0:101:99:0,280,3581 0/0:116,0:117:99:0,313,4016 0/1:37,32:69:99:1028,0,1120 0/0:42,0:42:99:0,123,1499 0/0:61,0:61:99:0,165,2038 0/0:52,0:52:99:0,141,1743 0/0:79,0:79:99:0,214,2641 0/0:55,0:55:99:0,159,1968 0/0:83,0:83:99:0,208,2648 0/0:54,0:54:99:0,153,1891 0/0:65,0:65:99:0,181,2212 0/0:60,0:60:99:0,172,2120 0/1:35,29:64:99:821,0,1027 0/0:68,0:68:99:0,184,2247 0/0:75,0:75:99:0,193,2403 0/0:47,0:47:99:0,132,1632 0/0:71,0:71:99:0,193,2403 0/0:68,0:68:99:0,190,2364 0/0:69,0:69:99:0,193,2386 1 51871629 . T C 1750 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.378;DP=4575;DS;Dels=0.00;FS=1.439;HRun=0;HaplotypeScore=1.5725;InbreedingCoeff=-0.0244;MQ=59.33;MQ0=0;MQRankSum=-0.920;QD=10.80;ReadPosRankSum=-1.884 GT:AD:DP:GQ:PL 0/0:82,0:83:99:0,211,2596 0/0:92,0:92:99:0,256,3111 0/0:102,0:102:99:0,277,3359 0/0:206,0:206:99:0,530,6571 0/0:190,0:190:99:0,478,6069 0/0:178,0:178:99:0,457,5928 0/0:130,0:130:99:0,349,4431 0/0:144,0:144:99:0,385,4856 0/0:85,0:85:99:0,232,2831 0/0:104,0:104:99:0,265,3274 0/0:82,0:82:99:0,217,2637 0/0:64,0:64:99:0,172,2093 0/0:83,0:83:99:0,232,2866 0/0:77,0:77:99:0,202,2507 0/0:239,0:240:99:0,617,7521 0/0:61,0:61:99:0,165,2014 0/0:88,0:88:99:0,247,3020 0/0:79,0:79:99:0,208,2575 0/0:140,0:140:99:0,376,4639 0/0:135,0:135:99:0,358,4435 0/0:146,0:146:99:0,376,4698 0/0:107,0:107:99:0,277,3381 0/0:197,1:198:99:0,500,6325 0/0:146,0:146:99:0,376,4806 0/0:157,0:157:99:0,400,5155 0/0:164,0:164:99:0,418,5304 0/0:38,0:38:99:0,111,1346 0/0:91,0:91:99:0,256,3094 0/0:80,0:80:99:0,223,2699 0/0:60,0:60:99:0,172,2082 0/0:77,0:77:99:0,223,2702 0/0:134,0:136:99:0,331,4207 0/0:80,0:80:99:0,217,2609 0/0:61,0:61:99:0,169,2085 0/0:75,0:75:99:0,214,2613 0/0:89,0:89:99:0,244,3021 0/0:119,0:119:99:0,319,3878 0/0:64,0:64:99:0,175,2149 0/0:76,0:76:99:0,220,2668 0/1:56,40:96:99:1024,0,1542 0/1:37,29:66:99:788,0,1009 0/0:86,0:86:99:0,241,2946 1 51873876 . T C 1633.68 . AC=1;AF=0.012;AN=84;BaseQRankSum=5.717;DP=7304;DS;Dels=0.00;FS=1.631;HRun=1;HaplotypeScore=3.1091;InbreedingCoeff=-0.0120;MQ=59.60;MQ0=1;MQRankSum=-0.100;QD=12.28;ReadPosRankSum=-0.513 GT:AD:DP:GQ:PL 0/0:138,0:138:99:0,370,4472 0/0:147,0:147:99:0,397,4843 0/0:136,0:137:99:0,367,4405 0/0:250,0:250:99:0,686,8310 0/0:243,0:243:99:0,683,8241 0/0:249,1:250:99:0,643,8480 0/0:230,0:231:99:0,635,7807 0/0:235,0:235:99:0,644,7784 0/0:154,0:154:99:0,400,4914 0/0:129,0:129:99:0,343,4132 0/0:148,0:148:99:0,400,4790 0/0:123,0:124:99:0,343,4134 0/0:102,0:102:99:0,268,3249 0/0:140,0:140:99:0,388,4668 0/0:250,0:250:99:0,662,7934 0/0:122,0:122:99:0,325,3971 0/0:142,0:142:99:0,391,4741 0/0:151,0:151:99:0,418,5020 0/0:246,0:246:99:0,644,7964 0/0:219,0:219:99:0,572,6984 0/0:241,0:242:99:0,623,7630 0/0:147,0:147:99:0,376,4557 0/0:248,0:248:99:0,698,8458 0/0:241,0:241:99:0,662,8078 0/0:223,0:223:99:0,599,7305 0/0:215,0:215:99:0,593,7225 0/0:141,0:141:99:0,385,4641 0/0:143,0:143:99:0,370,4570 0/0:145,0:145:99:0,400,4825 0/0:152,0:152:99:0,403,4913 0/0:126,0:126:99:0,346,4167 0/0:228,0:228:99:0,587,7216 0/1:72,61:133:99:1680,0,1914 0/0:137,0:137:99:0,379,4604 0/0:137,0:137:99:0,361,4438 0/0:156,0:156:99:0,427,5175 0/0:239,0:239:99:0,629,7640 0/0:155,1:156:99:0,371,4896 0/0:129,0:129:99:0,355,4324 0/0:152,0:152:99:0,424,5121 0/0:109,0:109:99:0,295,3603 0/0:147,0:147:99:0,403,4891 1 51873951 . G A 76558.17 . AC=47;AF=0.560;AN=84;BaseQRankSum=-17.692;DP=4407;DS;Dels=0.00;FS=0.533;HRun=0;HaplotypeScore=1.4279;InbreedingCoeff=-0.0144;MQ=59.56;MQ0=0;MQRankSum=-1.941;QD=22.08;ReadPosRankSum=-2.148 GT:AD:DP:GQ:PL 1/1:2,87:89:99:2820,178,0 0/1:46,40:86:99:1174,0,1309 0/1:41,37:78:99:1037,0,1163 1/1:0,185:185:99:6369,530,0 0/1:69,85:154:99:2533,0,2204 0/1:82,82:165:99:2530,0,2577 0/0:150,1:151:99:0,401,5640 1/1:0,149:149:99:4966,403,0 0/1:45,42:88:99:1203,0,1274 1/1:0,73:73:99:2413,199,0 0/0:99,0:99:99:0,292,3435 1/1:0,83:83:99:2893,241,0 1/1:0,58:58:99:1924,162,0 1/1:0,73:73:99:2519,211,0 1/1:0,239:240:99:7967,671,0 0/1:34,34:68:99:995,0,1006 0/1:43,40:83:99:1146,0,1235 1/1:0,71:71:99:2420,202,0 0/1:61,52:113:99:1477,0,1684 0/0:113,0:113:99:0,307,3735 0/1:64,38:102:99:1082,0,1808 0/1:29,41:70:99:1231,0,739 0/1:86,103:189:99:3040,0,2756 0/0:151,0:151:99:0,442,5757 0/1:76,63:139:99:1819,0,2439 0/0:183,2:185:99:0,449,6623 0/1:25,32:57:99:917,0,655 1/1:0,85:85:99:2985,250,0 0/0:74,1:75:99:0,192,2586 0/0:78,0:78:99:0,232,2722 0/1:47,38:85:99:1118,0,1330 1/1:0,100:100:99:3449,283,0 0/1:47,32:79:99:895,0,1387 0/1:50,46:96:99:1355,0,1395 0/1:35,42:77:99:1249,0,1015 1/1:1,100:101:99:3433,263,0 0/1:63,54:117:99:1550,0,1862 0/1:46,39:85:99:1090,0,1282 0/0:88,0:88:99:0,256,3041 0/1:39,42:82:99:1217,0,1043 0/1:34,36:70:99:994,0,911 1/1:0,77:77:99:2746,229,0 1 52442609 . C G 2219.22 . 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G A 1402.62 . 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G T 1266.82 . 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T C 234.93 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.437;DP=870;Dels=0.00;FS=4.283;HRun=1;HaplotypeScore=0.7583;InbreedingCoeff=-0.0246;MQ=58.97;MQ0=0;MQRankSum=-0.746;QD=7.12;ReadPosRankSum=1.080 GT:AD:DP:GQ:PL 0/0:16,0:16:42.10:0,42,478 0/0:18,0:18:45.12:0,45,503 0/0:17,0:17:45.12:0,45,521 0/0:52,0:52:99:0,129,1559 0/1:11,11:22:99:216,0,278 0/0:19,0:19:45.12:0,45,540 0/0:21,0:21:51.12:0,51,593 0/0:23,0:23:51.13:0,51,592 0/0:19,0:19:48.13:0,48,557 0/0:21,0:21:54.15:0,54,624 0/0:13,0:13:36.10:0,36,419 0/0:11,0:11:33.10:0,33,395 0/0:16,0:16:39.11:0,39,445 0/0:24,0:24:66.15:0,66,756 0/0:48,0:48:99:0,129,1514 0/0:25,0:25:63.16:0,63,724 0/0:19,0:19:48.13:0,48,553 0/0:16,0:16:45.12:0,45,523 0/0:28,0:28:78.21:0,78,916 0/0:35,0:35:90.27:0,90,1091 0/0:36,0:36:87.22:0,87,1014 0/0:27,0:27:63.16:0,63,737 0/0:17,0:17:45.13:0,45,519 0/0:19,0:19:42.10:0,42,504 0/0:19,0:19:42.09:0,42,485 0/0:10,0:10:27.07:0,27,314 0/0:17,0:17:39.10:0,39,449 0/0:21,0:21:57.15:0,57,650 0/1:6,4:11:81.56:82,0,152 0/0:19,0:19:51.14:0,51,592 0/0:18,0:18:51.15:0,51,594 0/0:35,0:35:90.26:0,90,1095 0/0:18,0:18:48.14:0,48,562 0/0:13,0:13:39.10:0,39,433 0/0:7,0:7:21.06:0,21,253 0/0:19,0:19:57.16:0,57,662 0/0:9,0:9:24.05:0,24,267 0/0:17,0:17:45.12:0,45,528 0/0:18,0:18:48.14:0,48,556 0/0:13,0:13:27.08:0,27,324 0/0:18,0:18:39.12:0,39,469 0/0:26,0:26:63.16:0,63,719 1 53600078 . A G 4800.50 . 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C T 19983.41 . AC=29;AF=0.345;AN=84;BaseQRankSum=4.862;DP=2044;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9112;InbreedingCoeff=-0.0006;MQ=59.34;MQ0=0;MQRankSum=0.552;QD=17.95;ReadPosRankSum=-1.364 GT:AD:DP:GQ:PL 1/1:0,27:27:69.21:864,69,0 0/1:21,20:41:99:534,0,554 0/0:33,0:33:90.25:0,90,1070 0/1:43,42:85:99:1129,0,1148 0/1:34,34:68:99:1025,0,974 0/0:70,0:70:99:0,178,2278 0/0:65,0:65:99:0,166,2149 0/0:49,0:49:99:0,126,1609 0/1:25,17:42:99:449,0,704 0/0:28,0:28:69.20:0,69,853 1/1:0,29:29:81.24:984,81,0 0/1:20,17:37:99:486,0,557 0/1:13,17:30:99:513,0,296 0/0:38,0:38:99:0,108,1277 1/1:0,147:148:99:4584,364,0 0/1:11,11:22:99:287,0,302 0/1:13,16:29:99:473,0,359 1/1:0,30:30:87.27:1066,87,0 0/1:38,31:69:99:819,0,982 0/0:77,0:77:99:0,211,2431 0/0:89,0:89:99:0,217,2653 0/1:13,20:33:99:614,0,306 0/0:81,0:81:99:0,214,2694 0/0:60,0:60:99:0,153,1986 0/0:59,0:59:99:0,156,2010 0/0:57,0:58:99:0,138,1784 0/0:24,0:24:63.18:0,63,747 0/0:53,0:53:99:0,141,1669 0/0:30,0:30:75.21:0,75,908 0/0:35,0:35:96.27:0,96,1119 0/0:42,0:42:99:0,105,1267 0/1:28,31:59:99:849,0,762 0/1:18,13:31:99:334,0,482 1/1:0,28:28:81.26:1011,81,0 0/1:19,24:43:99:696,0,517 0/1:20,22:42:99:670,0,515 0/1:40,28:68:99:745,0,1039 0/1:18,18:36:99:528,0,467 0/1:28,17:45:99:460,0,732 0/1:13,14:27:99:349,0,369 0/0:40,0:40:99:0,111,1302 0/1:26,18:44:99:514,0,720 1 53715167 . G A 1024.52 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.813;DP=1355;Dels=0.00;FS=3.157;HRun=0;HaplotypeScore=1.0122;InbreedingCoeff=-0.0244;MQ=59.13;MQ0=0;MQRankSum=0.226;QD=17.08;ReadPosRankSum=0.222 GT:AD:DP:GQ:PL 0/0:34,0:37:93.28:0,93,1170 0/0:18,0:18:51.16:0,51,639 0/0:21,0:21:60.18:0,60,740 0/0:55,0:55:99:0,153,1964 0/0:44,0:44:99:0,129,1669 0/0:35,0:35:99:0,105,1349 0/0:29,0:30:75.24:0,75,975 0/0:28,0:28:78.25:0,78,1023 0/0:24,0:24:63.18:0,63,781 0/0:31,0:31:93.28:0,93,1155 0/0:26,0:26:75.23:0,75,926 0/0:16,0:16:45.14:0,45,566 0/0:14,0:14:39.12:0,39,489 0/0:36,0:36:99:0,105,1317 0/0:81,0:81:99:0,226,2775 0/0:27,0:27:78.24:0,78,973 0/0:24,0:24:72.20:0,72,875 0/0:31,0:31:87.26:0,87,1066 0/0:42,0:43:99:0,123,1489 0/0:60,0:60:99:0,175,2169 0/1:17,19:37:99:545,0,471 0/1:6,17:23:99:542,0,116 0/0:66,0:66:99:0,193,2542 0/0:22,0:22:63.19:0,63,813 0/0:36,0:37:99:0,108,1418 0/0:32,0:32:96.29:0,96,1231 0/0:26,0:26:75.21:0,75,925 0/0:29,0:29:84.26:0,84,1052 0/0:33,0:33:96.29:0,96,1186 0/0:25,0:25:69.21:0,69,853 0/0:28,0:28:81.25:0,81,1005 0/0:47,0:47:99:0,141,1733 0/0:22,0:22:66.20:0,66,806 0/0:28,0:28:84.26:0,84,1040 0/0:33,0:33:93.29:0,93,1166 0/0:24,0:24:69.19:0,69,835 0/0:42,0:42:99:0,126,1515 0/0:21,0:21:63.20:0,63,787 0/0:24,0:24:69.20:0,69,861 0/0:29,0:29:87.26:0,87,1062 0/0:21,0:21:63.18:0,63,752 0/0:25,0:25:72.23:0,72,903 1 53716416 . G A 40331.38 . 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G T 37342.42 . 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A C 34106.46 . 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T C 60.50 . 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T C 693.28 . 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CTTA C 11.03 . 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G C 1025.35 . 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G C 92595.75 . AC=72;AF=0.857;AN=84;BaseQRankSum=-8.037;DP=3293;DS;Dels=0.00;FS=15.778;HRun=0;HaplotypeScore=1.4163;InbreedingCoeff=0.0278;MQ=59.37;MQ0=0;MQRankSum=-0.230;QD=29.37;ReadPosRankSum=-0.810 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1475,114,0 1/1:0,43:43:99:1534,123,0 1/1:1,47:48:99:1647,129,0 0/1:84,93:177:99:3153,0,2764 0/1:76,72:148:99:2436,0,2473 0/0:140,0:140:99:0,394,5275 0/1:54,56:110:99:1855,0,1745 0/1:64,68:132:99:2300,0,2104 1/1:0,49:49:99:1838,144,0 1/1:0,54:54:99:1920,153,0 1/1:0,51:51:99:1877,150,0 1/1:0,49:49:99:1812,144,0 1/1:0,54:54:99:1968,153,0 1/1:0,62:62:99:2272,178,0 1/1:0,202:202:99:6902,536,0 1/1:0,55:55:99:1898,150,0 0/1:34,28:62:99:873,0,966 1/1:0,57:59:99:2140,169,0 1/1:0,90:91:99:3196,250,0 1/1:0,92:92:99:3070,238,0 1/1:0,95:96:99:3320,262,0 1/1:0,59:59:99:2127,166,0 1/1:1,176:177:99:6588,453,0 1/1:1,117:118:99:4129,272,0 0/1:62,64:126:99:2115,0,1967 0/1:49,40:89:99:1374,0,1568 1/1:0,41:41:99:1518,120,0 1/1:0,48:48:99:1776,141,0 1/1:0,59:59:99:2163,172,0 1/1:0,54:54:99:1828,144,0 1/1:0,43:43:99:1514,120,0 1/1:0,78:78:99:2752,217,0 1/1:0,51:51:99:1873,147,0 0/1:25,23:48:99:711,0,714 0/1:39,21:60:99:547,0,1126 1/1:0,59:59:99:2137,166,0 1/1:0,79:79:99:2780,220,0 0/1:29,31:60:99:972,0,850 1/1:0,58:58:99:2071,160,0 1/1:0,63:63:99:2338,187,0 1/1:0,41:41:99:1519,120,0 1/1:0,64:64:99:2278,178,0 1 55014013 . C T 413.59 . 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G A 921.72 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.492;DP=1437;Dels=0.00;FS=4.960;HRun=0;HaplotypeScore=1.2964;InbreedingCoeff=-0.0245;MQ=57.94;MQ0=0;MQRankSum=0.116;QD=17.73;ReadPosRankSum=2.159 GT:AD:DP:GQ:PL 0/0:32,0:32:90.24:0,90,1007 0/0:35,0:35:87.25:0,87,1051 0/0:23,0:23:63.16:0,63,701 0/0:73,0:73:99:0,193,2339 0/0:49,0:49:99:0,144,1710 0/0:46,1:47:98.88:0,99,1451 0/0:36,0:36:99:0,105,1216 0/0:44,0:44:99:0,114,1391 0/0:29,0:29:78.22:0,78,915 0/0:29,0:29:81.20:0,81,904 0/0:23,0:23:57.15:0,57,670 0/0:27,0:27:78.18:0,78,856 0/0:22,0:22:63.16:0,63,695 0/0:24,0:24:72.20:0,72,813 0/0:83,0:84:99:0,223,2512 0/0:21,1:23:27.91:0,28,636 0/0:23,0:23:66.18:0,66,751 0/0:21,1:22:20.83:0,21,589 0/0:55,0:55:99:0,150,1683 0/0:54,0:54:99:0,144,1635 0/0:36,0:36:99:0,99,1103 0/0:33,0:33:96.18:0,96,1028 0/0:63,1:64:99:0,145,2137 0/0:30,0:30:81.22:0,81,972 0/0:42,0:42:99:0,120,1396 0/0:30,0:30:87.25:0,87,1039 0/0:20,0:20:57.10:0,57,595 0/0:52,0:52:99:0,132,1548 0/0:32,0:32:90.21:0,90,994 0/0:27,1:28:45.96:0,46,821 0/0:19,0:19:54.14:0,54,619 0/0:40,0:40:99:0,108,1213 0/0:36,0:36:99:0,99,1111 0/1:6,13:19:99:403,0,148 0/1:13,20:33:99:581,0,344 0/0:25,0:25:69.18:0,69,781 0/0:25,0:25:66.17:0,66,744 0/0:27,0:27:78.21:0,78,881 0/0:26,0:26:75.19:0,75,831 0/0:21,0:21:63.16:0,63,692 0/0:25,0:25:72.19:0,72,811 0/0:20,0:20:54.14:0,54,619 1 55050456 . G C 638.48 . AC=17;AF=0.202;AN=84;BaseQRankSum=-12.286;DP=1359;Dels=0.00;FS=454.460;HRun=3;HaplotypeScore=2.1635;InbreedingCoeff=-0.2818;MQ=58.53;MQ0=0;MQRankSum=-0.531;QD=1.12;ReadPosRankSum=-12.490 GT:AD:DP:GQ:PL 0/1:15,15:30:48.57:49,0,380 0/0:16,13:30:41.33:0,41,440 0/0:11,6:17:28.33:0,28,342 0/1:35,46:82:46.99:47,0,1067 0/0:27,32:59:21.62:0,22,710 0/0:24,31:56:23.66:0,24,729 0/0:26,21:47:2.01:2,0,652 0/0:22,20:42:18.50:0,19,527 0/0:17,7:24:41.32:0,41,480 0/1:13,12:25:48.64:49,0,355 0/0:8,8:16:18.06:0,18,224 0/0:17,8:25:7.77:0,8,432 0/1:7,11:18:69.84:70,0,205 0/1:12,10:22:10.25:10,0,229 0/1:35,32:67:47.59:48,0,971 0/1:10,18:28:59.43:59,0,258 0/0:9,7:16:20.98:0,21,238 0/0:16,12:28:18.01:0,18,402 0/0:17,7:24:19.45:0,19,499 0/0:26,22:48:51.14:0,51,610 0/1:13,12:25:27.60:28,0,342 0/0:19,19:38:14.17:0,14,509 0/1:30,43:73:47.55:48,0,945 0/1:15,23:39:28.38:28,0,415 0/0:28,32:60:60.16:0,60,748 0/0:20,20:40:20.74:0,21,641 0/0:15,11:26:34.97:0,35,394 0/0:13,12:25:16.42:0,16,448 0/1:10,16:26:86.91:87,0,260 0/0:16,9:25:3.59:0,4,359 0/1:8,12:20:5.82:6,0,174 0/0:18,14:32:33.99:0,34,403 0/0:16,11:27:7.57:0,8,418 0/0:9,11:20:0.37:0,0,223 0/1:12,13:25:97.20:97,0,237 0/1:11,12:23:8.43:8,0,228 0/1:9,10:19:31.89:32,0,294 0/0:18,12:30:14.28:0,14,459 0/1:17,12:29:59.98:60,0,351 0/0:10,2:12:24.08:0,24,308 0/0:14,5:19:30.09:0,30,369 0/1:7,11:18:68.43:68,0,186 1 55050529 . C T 6.88 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.466;DP=721;Dels=0.00;FS=2.158;HRun=1;HaplotypeScore=0.4602;InbreedingCoeff=-0.0366;MQ=58.59;MQ0=0;MQRankSum=-0.483;QD=0.34;ReadPosRankSum=-2.480 GT:AD:DP:GQ:PL 0/0:13,2:15:27.06:0,27,316 0/0:15,1:16:36.11:0,36,435 0/0:12,0:12:24.06:0,24,280 0/0:37,0:37:90.25:0,90,1100 0/0:27,2:30:60.18:0,60,740 0/0:27,1:28:60.14:0,60,719 0/0:19,1:20:54.15:0,54,666 0/0:15,0:15:33.06:0,33,368 0/0:9,0:9:27.07:0,27,311 0/0:9,0:9:27.08:0,27,324 0/0:10,1:11:24.07:0,24,292 0/0:15,0:15:39.11:0,39,465 0/0:11,2:13:33.09:0,33,386 0/0:11,0:11:24.07:0,24,288 0/0:31,3:34:0.92:6,0,616 0/0:15,1:16:30.08:0,30,369 0/0:12,1:13:36.11:0,36,439 0/0:13,0:13:30.07:0,30,342 0/1:14,6:20:49.38:49,0,323 0/0:26,0:26:69.18:0,69,803 0/0:12,0:12:30.09:0,30,365 0/0:22,0:22:51.14:0,51,591 0/0:33,1:34:93.21:0,93,1061 0/0:12,0:12:21.06:0,21,256 0/0:23,0:23:57.17:0,57,688 0/0:20,1:21:12.57:0,13,540 0/0:15,1:16:36.11:0,36,438 0/0:14,1:15:33.10:0,33,396 0/0:8,0:8:21.04:0,21,227 0/0:11,0:11:30.09:0,30,361 0/0:14,0:14:33.10:0,33,401 0/0:26,1:27:69.19:0,69,823 0/0:13,0:13:36.10:0,36,415 0/0:6,0:7:12.03:0,12,130 0/0:16,0:16:36.11:0,36,439 0/0:14,2:16:15.43:0,15,436 0/0:17,4:21:0.16:14,0,405 0/0:15,1:16:27.07:0,27,323 0/0:14,1:15:39.10:0,39,448 0/0:15,1:16:19.42:0,19,443 0/0:10,0:10:27.07:0,27,304 0/0:11,2:13:30.07:0,30,344 1 55064980 . G A 3879.54 . AC=3;AF=0.036;AN=84;BaseQRankSum=10.484;DP=3805;Dels=0.00;FS=0.406;HRun=0;HaplotypeScore=2.2638;InbreedingCoeff=-0.0370;MQ=59.25;MQ0=1;MQRankSum=3.936;QD=11.83;ReadPosRankSum=-0.298 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,177,1933 0/0:55,0:55:99:0,147,1611 0/0:54,0:54:99:0,153,1641 0/0:247,0:247:99:0,650,7773 0/0:198,2:201:99:0,512,6519 0/0:128,0:129:99:0,343,4035 0/0:124,0:124:99:0,319,3866 0/0:115,1:116:99:0,275,3611 0/0:54,0:54:99:0,153,1654 0/0:41,1:42:79.03:0,79,1177 0/0:51,0:51:99:0,144,1601 0/0:50,0:50:99:0,135,1464 0/0:53,0:53:99:0,138,1581 0/0:68,0:68:99:0,192,2107 0/0:207,0:207:99:0,538,5971 0/0:39,0:39:99:0,105,1185 0/0:61,0:61:99:0,177,1863 0/0:46,0:46:99:0,129,1404 0/0:117,0:117:99:0,316,3470 0/0:134,0:135:99:0,337,3851 0/1:60,55:115:99:1498,0,1530 0/0:96,0:96:99:0,265,2857 0/0:235,0:235:99:0,605,7362 0/0:114,0:114:99:0,289,3484 0/0:150,0:150:99:0,400,4693 0/0:116,0:116:99:0,301,3592 0/0:45,0:45:99:0,114,1315 0/0:53,0:53:99:0,147,1619 0/0:58,0:58:99:0,156,1745 0/0:52,0:52:99:0,141,1603 0/0:46,0:46:99:0,132,1436 0/1:91,59:150:99:1588,0,2114 0/0:87,0:87:99:0,232,2571 0/0:69,0:69:99:0,192,2118 0/0:61,0:61:99:0,168,1821 0/0:57,0:57:99:0,162,1739 0/0:127,0:127:99:0,343,3797 0/0:54,0:54:99:0,147,1631 0/1:35,28:63:99:794,0,870 0/0:53,0:53:99:0,138,1523 0/0:52,0:52:99:0,138,1507 0/0:39,0:39:99:0,108,1194 1 55067043 . A T 433.10 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.659;DP=3088;Dels=0.00;FS=1.811;HRun=1;HaplotypeScore=3.1785;InbreedingCoeff=-0.0120;MQ=59.02;MQ0=0;MQRankSum=0.358;QD=8.17;ReadPosRankSum=-1.641 GT:AD:DP:GQ:PL 0/0:63,0:63:99:0,156,1949 0/0:58,0:58:99:0,153,1850 0/0:52,0:52:99:0,147,1776 0/0:203,0:203:99:0,533,6497 0/0:159,0:159:99:0,421,5145 0/0:121,1:124:99:0,304,3844 0/0:99,0:99:99:0,259,3200 0/0:102,0:102:99:0,259,3222 0/0:45,0:45:99:0,123,1469 0/0:47,0:47:99:0,129,1520 0/0:42,0:42:99:0,102,1259 0/0:46,0:46:99:0,129,1543 0/0:51,0:51:99:0,135,1634 0/0:52,0:52:99:0,126,1539 0/0:174,0:174:99:0,454,5445 0/0:41,0:41:99:0,114,1336 0/0:65,0:65:99:0,184,2209 0/0:43,0:43:99:0,117,1424 0/0:82,0:83:99:0,226,2719 0/0:123,0:124:99:0,307,3779 0/0:100,1:102:99:0,250,3028 0/0:60,0:60:99:0,159,1874 0/0:168,0:168:99:0,436,5397 0/0:82,0:83:99:0,202,2513 0/0:108,0:108:99:0,280,3424 0/0:86,0:86:99:0,226,2708 0/0:37,0:37:90.26:0,90,1077 0/1:32,21:53:99:479,0,877 0/0:39,0:39:96.25:0,96,1137 0/0:37,0:37:99:0,102,1207 0/0:40,0:41:99:0,114,1346 0/0:88,0:88:99:0,214,2684 0/0:69,0:69:99:0,184,2198 0/0:37,0:37:99:0,99,1210 0/0:46,0:46:99:0,132,1584 0/0:47,0:47:99:0,126,1502 0/0:95,0:95:99:0,256,3082 0/0:54,0:54:99:0,147,1780 0/0:46,0:46:99:0,132,1563 0/0:40,0:40:99:0,105,1298 0/0:44,0:44:99:0,114,1401 0/0:35,0:35:99:0,102,1187 1 55074715 . C A 5262.14 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.257;DP=10052;DS;Dels=0.00;FS=4.708;HRun=1;HaplotypeScore=5.9401;InbreedingCoeff=-0.0244;MQ=58.87;MQ0=0;MQRankSum=4.307;QD=11.93;ReadPosRankSum=0.111 GT:AD:DP:GQ:PL 0/0:249,0:249:99:0,668,8259 0/0:249,0:249:99:0,656,8078 0/0:212,0:212:99:0,569,7079 0/0:250,0:250:99:0,704,9085 0/0:249,1:250:99:0,695,9158 0/0:250,0:250:99:0,680,8984 0/0:250,0:250:99:0,677,8871 0/0:248,1:249:99:0,671,8788 0/0:233,0:234:99:0,626,7733 0/0:228,0:228:99:0,611,7520 0/0:217,0:217:99:0,605,7475 0/1:122,98:220:99:2685,0,3415 0/0:209,0:209:99:0,560,6892 0/1:126,95:221:99:2577,0,3578 0/0:248,2:250:99:0,695,8388 0/0:226,1:227:99:0,632,7713 0/0:244,0:244:99:0,659,8205 0/0:231,0:231:99:0,620,7673 0/0:249,0:250:99:0,665,7953 0/0:250,0:250:99:0,689,8471 0/0:248,1:250:99:0,659,7917 0/0:250,0:250:99:0,674,8380 0/0:250,0:250:99:0,695,9167 0/0:249,1:250:99:0,635,8489 0/0:249,0:250:99:0,671,8869 0/0:250,0:250:99:0,686,9038 0/0:185,1:186:99:0,496,6078 0/0:250,0:250:99:0,692,8483 0/0:203,1:204:99:0,533,6894 0/0:244,0:244:99:0,653,8084 0/0:247,0:247:99:0,668,8321 0/0:250,0:250:99:0,683,8434 0/0:250,0:250:99:0,671,8291 0/0:231,2:233:99:0,641,7836 0/0:250,0:250:99:0,671,8377 0/0:249,1:250:99:0,671,8325 0/0:247,3:250:99:0,665,7913 0/0:250,0:250:99:0,662,8244 0/0:250,0:250:99:0,689,8513 0/0:246,0:246:99:0,665,8211 0/0:202,0:202:99:0,554,6735 0/0:250,0:250:99:0,683,8433 1 55080374 . G GT 324.41 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.098;DP=1555;FS=8.516;HRun=1;HaplotypeScore=88.4202;InbreedingCoeff=-0.0120;MQ=58.66;MQ0=0;MQRankSum=0.871;QD=8.54;ReadPosRankSum=-0.628 GT:AD:DP:GQ:PL 0/0:31,0:31:90.29:0,90,1161 0/0:34,0:34:99:0,99,1272 0/0:27,0:27:78.25:0,78,1003 0/0:68,0:68:99:0,196,2518 0/0:55,0:55:99:0,159,2043 0/0:51,0:51:99:0,147,1902 0/0:34,0:34:98.53:0,99,1249 0/1:27,11:37:99:380,0,899 0/0:33,0:32:87.28:0,87,1128 0/0:32,0:32:96.31:0,96,1247 0/0:22,0:22:66.21:0,66,857 0/0:30,0:30:87.28:0,87,1120 0/0:26,0:26:75.24:0,75,967 0/0:30,0:30:90.28:0,90,1154 0/0:96,0:96:99:0,277,3554 0/0:20,0:20:57.19:0,57,740 0/0:43,0:43:99:0,126,1620 0/0:29,0:29:78.25:0,78,1004 0/0:47,0:47:99:0,138,1773 0/0:57,0:57:99:0,169,2181 0/0:41,0:41:99:0,114,1480 0/0:33,0:33:93.30:0,93,1199 0/0:55,0:55:99:0,157,2015 0/0:32,0:32:96.31:0,96,1240 0/0:49,0:49:99:0,141,1803 0/0:35,0:35:99:0,102,1309 0/0:18,0:18:51.16:0,51,654 0/0:28,0:28:81.26:0,81,1052 0/0:24,0:24:69.20:0,69,860 0/0:22,0:22:63.20:0,63,802 0/0:29,0:29:84.26:0,84,1066 0/0:64,0:64:99:0,187,2399 0/0:39,0:39:99:0,108,1402 0/0:20,0:20:57.19:0,57,740 0/0:24,0:24:72.23:0,72,917 0/0:33,0:33:93.30:0,93,1196 0/0:58,0:58:99:0,166,2130 0/0:33,0:33:99:0,99,1267 0/0:36,0:36:99:0,105,1329 0/0:30,0:30:87.28:0,87,1122 0/0:23,0:23:69.22:0,69,888 0/0:26,0:26:72.22:0,72,920 1 55080405 . G A 863.94 . 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G A 602.70 . 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C T 650.48 . 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C CGGGGGGAGT 373.94 . 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C T 2052.12 . 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G T 16.03 . 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C T 11.62 . 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C T 998.21 . 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A G 71069.44 . AC=70;AF=0.833;AN=84;BaseQRankSum=25.866;DP=2959;Dels=0.00;FS=11.103;HRun=0;HaplotypeScore=2.2819;InbreedingCoeff=0.1429;MQ=58.84;MQ0=0;MQRankSum=2.348;QD=26.95;ReadPosRankSum=-2.358 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1901,153,0 1/1:0,42:42:99:1291,102,0 1/1:0,58:58:99:1845,147,0 0/1:95,60:155:99:1657,0,2437 1/1:0,105:105:99:3603,268,0 1/1:0,85:85:99:2851,217,0 1/1:0,71:71:99:2490,187,0 1/1:0,88:88:99:3111,238,0 0/1:38,29:67:99:840,0,1024 1/1:0,41:42:99:1348,111,0 0/1:44,24:68:99:619,0,1192 0/1:34,24:58:99:655,0,935 1/1:0,34:34:93.27:1122,93,0 0/1:27,27:54:99:763,0,732 0/0:169,0:170:99:0,442,5198 0/1:42,32:74:99:828,0,1105 0/1:26,22:48:99:612,0,704 1/1:0,43:45:99:1483,120,0 0/1:50,33:83:99:961,0,1491 0/1:44,35:79:99:984,0,1179 1/1:0,85:89:99:2743,220,0 1/1:0,60:60:99:1902,153,0 0/0:150,2:152:99:0,367,4456 1/1:0,63:63:99:2143,163,0 1/1:0,87:87:99:2789,208,0 1/1:0,76:76:99:2517,190,0 1/1:0,43:43:99:1379,111,0 1/1:0,52:52:99:1736,141,0 1/1:0,51:52:99:1730,141,0 1/1:0,52:52:99:1658,132,0 1/1:0,52:52:99:1761,141,0 1/1:0,86:86:99:2688,220,0 1/1:1,78:79:99:2381,157,0 1/1:0,53:53:99:1821,144,0 1/1:0,50:50:99:1737,141,0 1/1:0,65:65:99:2181,178,0 1/1:0,89:89:99:2890,232,0 1/1:0,58:58:99:1984,159,0 0/1:29,26:55:99:768,0,828 1/1:1,59:60:99:2003,135,0 1/1:0,35:35:93.30:1189,93,0 1/1:0,66:66:99:2104,171,0 1 55524237 . G A 43211.43 . AC=70;AF=0.833;AN=84;BaseQRankSum=-6.342;DP=1824;Dels=0.00;FS=4.736;HRun=0;HaplotypeScore=1.4348;InbreedingCoeff=0.1429;MQ=58.57;MQ0=0;MQRankSum=1.073;QD=26.62;ReadPosRankSum=1.118 GT:AD:DP:GQ:PL 1/1:0,35:35:96.25:1103,96,0 1/1:0,33:33:93.25:1066,93,0 1/1:0,38:38:99:1196,99,0 0/1:64,26:90:99:615,0,1873 1/1:0,60:60:99:2014,174,0 1/1:0,56:56:99:1827,153,0 1/1:0,49:49:99:1629,138,0 1/1:0,48:48:99:1536,135,0 0/1:20,25:45:99:685,0,549 1/1:0,28:28:84.24:959,84,0 0/1:11,25:36:99:716,0,284 0/1:20,12:32:99:274,0,506 1/1:0,27:27:78.22:905,78,0 0/1:19,18:37:99:430,0,495 0/0:99,0:99:99:0,268,3134 0/1:25,22:48:99:528,0,706 0/1:12,10:22:99:255,0,282 1/1:0,25:25:69.20:796,69,0 0/1:31,20:52:99:476,0,858 0/1:31,21:52:99:552,0,827 1/1:0,40:41:99:1268,108,0 1/1:0,28:29:81.22:923,81,0 0/0:102,0:102:99:0,280,3481 1/1:0,44:44:99:1373,120,0 1/1:0,51:52:99:1704,147,0 1/1:0,50:50:99:1657,141,0 1/1:0,24:24:69.19:810,69,0 1/1:0,29:29:81.21:933,81,0 1/1:0,43:43:99:1465,123,0 1/1:0,36:36:99:1170,102,0 1/1:0,37:37:99:1212,105,0 1/1:0,56:56:99:1757,150,0 1/1:1,39:40:99:1297,111,0 1/1:0,29:29:87.23:1010,87,0 1/1:0,32:32:93.25:1071,93,0 1/1:0,32:32:87.25:1037,87,0 1/1:0,49:49:99:1554,135,0 1/1:0,37:37:99:1194,102,0 0/1:17,16:33:99:445,0,403 1/1:0,40:40:99:1394,120,0 1/1:1,25:26:46.51:781,47,0 1/1:0,51:51:99:1595,141,0 1 55529187 . G A 33965.16 . AC=82;AF=0.976;AN=84;BaseQRankSum=1.296;DP=1194;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.5329;InbreedingCoeff=-0.0245;MQ=57.95;MQ0=1;MQRankSum=1.324;QD=28.45;ReadPosRankSum=1.902 GT:AD:DP:GQ:PL 1/1:0,23:23:57.16:691,57,0 1/1:1,23:24:63.19:767,63,0 1/1:0,22:22:54.17:659,54,0 1/1:0,57:57:99:1599,135,0 1/1:1,54:55:99:1472,104,0 1/1:1,37:38:87.25:1072,87,0 1/1:2,32:34:87.25:1056,87,0 1/1:0,29:29:69.21:831,69,0 1/1:0,29:29:81.24:958,81,0 1/1:1,18:19:39.12:473,39,0 1/1:1,22:23:57.17:692,57,0 0/1:7,13:20:99:310,0,128 0/1:8,10:18:99:205,0,195 1/1:1,24:25:57.17:680,57,0 1/1:0,66:67:99:1834,153,0 1/1:2,24:26:63.19:762,63,0 1/1:1,28:29:32.72:700,33,0 1/1:0,23:23:51.11:569,51,0 1/1:1,22:23:51.12:597,51,0 1/1:0,52:52:99:1633,132,0 1/1:1,43:44:99:1287,108,0 1/1:0,24:24:69.20:812,69,0 1/1:0,53:53:99:1680,141,0 1/1:0,22:22:54.15:635,54,0 1/1:0,38:39:93.26:1119,93,0 1/1:0,31:31:66.18:784,66,0 1/1:0,22:22:57.17:691,57,0 1/1:0,21:21:51.16:623,51,0 1/1:1,15:16:36.08:432,36,0 1/1:0,14:14:39.12:460,39,0 1/1:0,9:9:21.07:260,21,0 1/1:2,42:44:99:1396,117,0 1/1:1,39:40:99:1161,99,0 1/1:0,15:15:36.11:456,36,0 1/1:1,14:15:30.09:368,30,0 1/1:0,23:23:57.16:669,57,0 1/1:0,24:24:54.17:667,54,0 1/1:1,23:24:60.18:712,60,0 1/1:0,20:20:45.12:516,45,0 1/1:1,25:26:60.18:710,60,0 1/1:0,11:11:30.09:369,30,0 1/1:0,21:21:51.12:601,51,0 1 55562796 . C G 1710.49 . AC=26;AF=0.310;AN=84;BaseQRankSum=-21.977;DP=2373;Dels=0.00;FS=1642.700;HRun=2;HaplotypeScore=1.2462;InbreedingCoeff=-0.4585;MQ=59.02;MQ0=0;MQRankSum=1.086;QD=1.19;ReadPosRankSum=-20.652 GT:AD:DP:GQ:PL 0/1:19,19:38:99:198,0,521 0/1:29,14:43:99:114,0,644 0/1:31,21:53:84.82:85,0,882 0/1:50,38:88:40.17:40,0,1370 0/1:36,29:65:99:102,0,860 0/0:55,24:80:43.62:0,44,1437 0/1:40,18:58:42.02:42,0,1058 0/1:37,17:54:73.06:73,0,1036 0/1:34,16:50:99:114,0,1003 0/1:20,10:30:6.07:6,0,514 0/1:26,26:53:99:112,0,562 0/1:27,12:39:25.12:25,0,692 0/1:26,12:38:68.31:68,0,788 0/0:23,7:30:5.62:0,6,593 0/1:106,52:158:40.14:40,0,2752 0/1:31,16:47:62.61:63,0,863 0/0:32,7:39:75.16:0,75,861 0/1:30,19:50:67.54:68,0,622 0/0:65,19:85:67.40:0,67,1717 0/0:68,33:101:5.68:0,6,1551 0/1:62,30:92:99:160,0,1595 0/0:34,15:49:35.77:0,36,836 0/1:47,35:82:99:254,0,1185 0/1:31,23:54:25.24:25,0,809 0/0:66,22:88:38.93:0,39,1991 0/0:43,18:62:40.86:0,41,1193 0/0:17,12:29:12.61:0,13,470 0/1:32,17:49:9.66:10,0,831 0/0:26,13:39:19.70:0,20,657 0/1:33,12:45:26.02:26,0,903 0/1:31,15:46:66.60:67,0,818 0/0:49,14:63:23.51:0,24,1182 0/0:43,19:62:43.92:0,44,1037 0/0:36,15:51:70.57:0,71,1107 0/1:33,13:46:24.61:25,0,919 0/1:32,20:52:99:115,0,803 0/0:50,13:63:3.58:0,4,1302 0/1:25,8:33:7.89:8,0,755 0/0:29,15:44:20.96:0,21,778 0/0:36,15:51:12.09:0,12,867 0/1:22,12:34:24.25:24,0,531 0/1:24,16:40:21.36:21,0,590 1 55638075 . G A 45258.26 . AC=70;AF=0.833;AN=84;BaseQRankSum=-15.290;DP=1741;Dels=0.00;FS=0.227;HRun=1;HaplotypeScore=0.6560;InbreedingCoeff=0.1429;MQ=59.44;MQ0=0;MQRankSum=-1.111;QD=28.83;ReadPosRankSum=-1.149 GT:AD:DP:GQ:PL 1/1:0,32:32:90.28:1122,90,0 1/1:0,43:43:99:1348,105,0 1/1:0,42:42:99:1430,117,0 0/1:35,24:59:99:731,0,1094 1/1:1,28:29:44.62:999,45,0 1/1:0,38:38:99:1383,105,0 1/1:0,39:39:99:1318,102,0 1/1:0,45:45:99:1627,129,0 0/1:23,17:40:99:453,0,712 1/1:0,34:34:99:1198,99,0 0/1:16,14:30:99:403,0,486 0/1:15,11:26:99:302,0,417 1/1:0,34:34:93.28:1153,93,0 0/1:19,18:37:99:484,0,610 0/0:109,0:110:99:0,292,3750 0/1:16,10:26:99:294,0,530 0/1:14,13:27:99:374,0,435 1/1:0,42:42:99:1437,117,0 0/1:40,31:71:99:835,0,1235 0/1:28,38:66:99:1073,0,825 1/1:0,88:89:99:2918,232,0 1/1:1,50:51:99:1716,107,0 0/0:61,0:61:99:0,169,2331 1/1:0,37:37:99:1368,108,0 1/1:0,53:53:99:1794,138,0 1/1:0,34:34:99:1255,99,0 1/1:0,26:26:72.22:892,72,0 1/1:0,34:34:96.30:1181,96,0 1/1:0,30:31:81.25:1009,81,0 1/1:0,32:32:93.28:1125,93,0 1/1:0,19:19:51.16:644,51,0 1/1:0,36:36:99:1286,105,0 1/1:0,41:41:99:1360,111,0 1/1:0,35:35:96.30:1205,96,0 1/1:0,36:36:99:1228,99,0 1/1:0,32:33:93.28:1137,93,0 1/1:0,51:52:99:1824,147,0 1/1:1,30:31:50.95:1010,51,0 0/1:12,19:31:99:559,0,366 1/1:0,43:43:99:1444,117,0 1/1:0,33:33:96.30:1180,96,0 1/1:0,33:33:93.29:1162,93,0 1 56977819 . G A 3841.60 . AC=12;AF=0.143;AN=84;BaseQRankSum=-6.193;DP=907;Dels=0.00;FS=9.978;HRun=0;HaplotypeScore=0.5668;InbreedingCoeff=0.0277;MQ=58.90;MQ0=0;MQRankSum=0.909;QD=15.43;ReadPosRankSum=-1.299 GT:AD:DP:GQ:PL 0/1:8,6:14:99:166,0,251 0/1:9,3:12:70.53:71,0,287 0/0:17,0:17:51.15:0,51,609 0/1:15,19:34:99:543,0,481 0/0:27,0:28:78.25:0,78,1020 0/1:12,9:21:99:270,0,386 0/1:11,11:22:99:332,0,313 0/0:29,0:29:84.27:0,84,1086 0/0:18,0:18:51.13:0,51,615 0/0:17,0:17:51.11:0,51,601 0/0:14,0:15:42.13:0,42,509 0/0:12,0:12:33.07:0,33,379 0/0:11,0:11:33.10:0,33,410 0/0:23,0:23:63.18:0,63,742 0/0:59,0:59:99:0,165,1983 0/0:29,0:30:81.23:0,81,978 0/0:21,0:21:54.17:0,54,660 0/1:10,10:20:99:280,0,277 1/1:0,28:28:78.21:931,78,0 0/1:11,9:20:99:270,0,315 0/0:32,0:32:90.28:0,90,1106 0/0:25,0:25:69.18:0,69,817 0/1:20,17:37:99:501,0,569 0/0:26,0:26:72.24:0,72,966 0/0:22,0:22:63.21:0,63,835 0/0:14,0:14:42.11:0,42,541 0/0:11,0:11:30.09:0,30,368 0/0:20,0:20:57.17:0,57,689 0/0:23,0:23:66.18:0,66,795 0/0:17,0:17:51.14:0,51,592 0/1:12,10:22:99:283,0,361 0/0:29,0:29:87.25:0,87,1030 0/0:18,0:18:54.15:0,54,635 0/0:15,0:15:45.14:0,45,553 0/0:13,0:13:39.12:0,39,471 0/0:15,0:15:45.14:0,45,553 0/0:20,0:20:51.13:0,51,601 0/0:20,0:20:57.18:0,57,696 0/1:12,7:19:99:194,0,376 0/0:18,0:18:51.15:0,51,614 0/0:19,0:19:57.18:0,57,707 0/0:21,0:21:60.19:0,60,741 1 57219539 . C A 504.23 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.443;DP=3230;DS;Dels=0.00;FS=4.173;HRun=0;HaplotypeScore=1.0241;InbreedingCoeff=-0.0120;MQ=59.46;MQ0=0;MQRankSum=-0.653;QD=10.73;ReadPosRankSum=0.569 GT:AD:DP:GQ:PL 0/0:69,0:69:99:0,184,2389 0/0:72,0:72:99:0,187,2420 0/0:84,0:84:99:0,226,2927 0/0:93,0:93:99:0,247,3337 0/0:79,0:80:99:0,214,2931 0/0:94,0:94:99:0,223,3070 0/0:73,0:73:99:0,196,2682 0/0:82,0:82:99:0,217,2906 0/0:65,0:65:99:0,172,2244 0/0:44,0:44:99:0,111,1455 0/0:79,0:79:99:0,199,2587 0/0:99,0:99:99:0,268,3431 0/0:74,0:74:99:0,184,2415 0/0:58,0:58:99:0,166,2114 0/0:248,1:249:99:0,574,7858 0/1:27,20:47:99:550,0,778 0/0:66,0:66:99:0,181,2297 0/0:64,0:64:99:0,178,2271 0/0:81,0:81:99:0,208,2662 0/0:81,0:81:99:0,205,2625 0/0:99,0:99:99:0,223,2951 0/0:65,0:65:99:0,163,2134 0/0:86,0:86:99:0,229,3140 0/0:78,0:78:99:0,214,2888 0/0:76,0:76:99:0,199,2706 0/0:69,0:69:99:0,184,2506 0/0:48,0:48:99:0,135,1719 0/0:59,0:59:99:0,169,2135 0/0:71,0:71:99:0,193,2482 0/0:86,0:86:99:0,229,2948 0/0:59,0:59:99:0,159,2057 0/0:96,0:96:99:0,241,3145 0/0:51,0:51:99:0,129,1694 0/0:71,0:71:99:0,187,2423 0/0:63,0:63:99:0,175,2259 0/0:74,0:74:99:0,181,2382 0/0:68,0:68:99:0,187,2362 0/0:69,0:69:99:0,184,2363 0/0:78,0:78:99:0,208,2676 0/0:69,0:69:99:0,187,2408 0/0:63,0:63:99:0,169,2172 0/0:78,0:78:99:0,211,2718 1 57333312 . A G 851.73 . 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C A 20652.77 . 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C T 918.75 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.663;DP=1847;Dels=0.00;FS=1.389;HRun=1;HaplotypeScore=1.9427;InbreedingCoeff=-0.0120;MQ=59.35;MQ0=0;MQRankSum=-0.033;QD=12.25;ReadPosRankSum=0.180 GT:AD:DP:GQ:PL 0/0:33,0:33:90.29:0,90,1163 0/0:22,0:22:60.18:0,60,759 0/0:27,0:27:75.23:0,75,933 0/0:116,0:116:99:0,295,3855 0/0:77,0:77:99:0,217,2846 0/0:68,0:68:99:0,166,2176 0/0:71,0:71:99:0,175,2281 0/0:67,0:67:99:0,178,2336 0/0:27,0:27:63.19:0,63,808 0/0:19,0:19:42.13:0,42,542 0/0:34,0:34:96.28:0,96,1163 0/0:21,0:21:60.19:0,60,754 0/0:25,0:25:72.22:0,72,900 0/0:21,0:21:63.19:0,63,782 0/0:104,0:104:99:0,283,3488 0/0:22,0:22:57.18:0,57,723 0/0:36,0:36:87.26:0,87,1111 0/0:26,0:26:78.24:0,78,970 0/0:65,0:65:99:0,163,2061 0/1:38,37:75:99:965,0,1108 0/0:56,0:56:99:0,153,1847 0/0:37,0:37:96.28:0,96,1222 0/0:96,0:96:99:0,241,3161 0/0:54,0:54:99:0,129,1758 0/0:63,0:63:99:0,166,2202 0/0:63,0:63:99:0,160,2129 0/0:21,0:21:57.16:0,57,694 0/0:34,0:34:93.27:0,93,1162 0/0:27,0:27:72.22:0,72,917 0/0:22,0:22:63.19:0,63,770 0/0:23,0:23:57.17:0,57,724 0/0:64,0:64:99:0,168,2145 0/0:40,0:40:99:0,105,1272 0/0:25,0:25:75.21:0,75,928 0/0:31,0:31:81.23:0,81,1002 0/0:36,0:36:99:0,99,1247 0/0:72,0:72:99:0,184,2315 0/0:31,0:31:87.26:0,87,1072 0/0:26,0:26:75.23:0,75,932 0/0:22,0:22:57.17:0,57,702 0/0:25,0:25:72.22:0,72,898 0/0:23,0:23:66.20:0,66,829 1 57383358 . C T 5123.11 . 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C A 7931.09 . AC=4;AF=0.048;AN=84;BaseQRankSum=-22.576;DP=4930;DS;Dels=0.00;FS=9.036;HRun=1;HaplotypeScore=1.7073;InbreedingCoeff=-0.0500;MQ=59.43;MQ0=0;MQRankSum=1.552;QD=13.33;ReadPosRankSum=1.676 GT:AD:DP:GQ:PL 0/0:73,0:73:99:0,214,2678 0/0:109,0:109:99:0,289,3751 0/0:111,0:111:99:0,283,3665 0/0:198,0:199:99:0,512,6990 0/0:205,1:206:99:0,554,7679 0/0:179,0:179:99:0,476,6577 0/0:146,0:146:99:0,394,5409 0/0:147,1:148:99:0,359,5320 0/0:86,0:86:99:0,241,3071 0/0:87,0:87:99:0,244,3104 0/0:81,0:81:99:0,238,3016 0/0:87,0:87:99:0,241,3075 0/0:57,0:57:99:0,150,1959 0/0:102,0:102:99:0,268,3475 0/0:247,1:248:99:0,674,8714 0/0:81,0:81:99:0,217,2793 0/0:94,0:94:99:0,262,3376 0/0:98,0:98:99:0,271,3475 0/0:157,0:157:99:0,433,5528 0/0:122,1:123:99:0,325,4191 0/1:65,63:128:99:1673,0,1874 0/0:90,0:90:99:0,250,3232 0/1:85,106:192:99:2804,0,2683 0/0:142,1:143:99:0,346,5166 0/1:80,67:147:99:1840,0,2572 0/0:148,1:149:99:0,391,5352 0/0:79,0:79:99:0,223,2850 0/0:97,0:97:99:0,283,3543 0/0:91,0:91:99:0,256,3259 0/0:95,0:95:99:0,262,3364 0/0:81,0:81:99:0,229,2938 0/1:69,58:127:99:1615,0,2043 0/0:84,0:84:99:0,223,2875 0/0:84,1:85:99:0,226,2874 0/0:93,0:93:99:0,265,3399 0/0:101,0:101:99:0,292,3675 0/0:156,0:156:99:0,406,5268 0/0:103,0:103:99:0,274,3536 0/0:119,0:119:99:0,331,4228 0/0:97,0:97:99:0,274,3492 0/0:94,0:94:99:0,268,3407 0/0:106,0:106:99:0,298,3839 1 57431560 . G A 812.49 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.750;DP=2868;Dels=0.00;FS=13.704;HRun=0;HaplotypeScore=1.2337;InbreedingCoeff=-0.0120;MQ=59.29;MQ0=0;MQRankSum=1.207;QD=15.33;ReadPosRankSum=-0.419 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,147,1858 0/0:55,0:55:99:0,141,1812 0/0:44,0:45:99:0,111,1451 0/0:140,0:140:99:0,370,4877 0/0:118,0:118:99:0,304,4098 0/0:83,0:83:99:0,211,2803 0/0:91,0:91:99:0,223,3006 0/0:114,0:114:99:0,280,3789 0/0:33,0:33:90.27:0,90,1132 0/0:54,0:54:99:0,141,1788 0/0:34,0:34:90.27:0,90,1146 0/0:48,0:48:99:0,132,1640 0/0:46,0:46:99:0,120,1539 0/0:50,0:50:99:0,126,1628 0/0:200,0:201:99:0,502,6333 0/0:27,0:27:78.23:0,78,959 0/0:49,0:49:99:0,129,1636 0/0:41,0:42:99:0,111,1382 0/0:84,0:84:99:0,199,2503 0/0:82,0:82:99:0,208,2643 0/0:99,0:99:99:0,274,3413 0/0:55,0:55:99:0,147,1855 0/0:130,0:130:99:0,331,4491 0/0:57,0:57:99:0,144,1949 0/0:80,0:80:99:0,193,2640 0/0:85,0:85:99:0,205,2738 0/0:31,0:31:81.23:0,81,1008 0/0:40,0:40:99:0,105,1310 0/0:36,0:36:99:0,102,1313 0/0:56,0:56:99:0,150,1893 0/0:64,0:64:99:0,172,2163 0/0:96,0:96:99:0,241,3138 0/0:50,0:50:99:0,132,1656 0/0:52,1:53:99:0,112,1720 0/0:56,0:56:99:0,147,1845 0/0:74,0:74:99:0,199,2477 0/0:93,0:93:99:0,235,2928 0/0:65,0:65:99:0,168,2079 0/0:49,0:49:99:0,132,1651 0/0:48,0:48:99:0,129,1624 0/1:24,29:53:99:859,0,660 0/0:49,0:49:99:0,138,1761 1 58999651 . T G 11539.90 . AC=5;AF=0.060;AN=84;BaseQRankSum=28.362;DP=5111;DS;Dels=0.00;FS=21.619;HRun=0;HaplotypeScore=1.5905;InbreedingCoeff=-0.0633;MQ=59.50;MQ0=0;MQRankSum=2.570;QD=14.19;ReadPosRankSum=0.178 GT:AD:DP:GQ:PL 0/0:110,0:110:99:0,307,3764 0/0:93,0:93:99:0,250,3067 0/0:104,0:104:99:0,274,3371 0/1:100,83:183:99:2350,0,2806 0/0:202,0:202:99:0,527,6673 0/0:206,0:206:99:0,530,6901 0/0:181,1:182:99:0,424,5865 0/0:154,0:154:99:0,406,5157 0/0:94,0:94:99:0,253,3071 0/0:81,0:81:99:0,229,2744 0/0:100,0:100:99:0,259,3183 0/0:78,1:79:99:0,220,2667 0/0:82,1:83:99:0,174,2574 0/0:71,0:71:99:0,202,2437 0/0:250,0:250:99:0,638,7867 0/0:68,0:69:99:0,190,2300 0/0:97,0:97:99:0,244,3040 0/0:103,0:103:99:0,274,3361 0/0:155,0:155:99:0,406,5086 0/0:155,0:155:99:0,388,4933 0/0:170,0:170:99:0,427,5377 0/0:93,0:93:99:0,265,3212 0/1:105,115:220:99:3356,0,2942 0/1:94,95:189:99:2888,0,2550 0/1:94,76:170:99:2170,0,2593 0/0:154,0:154:99:0,385,4923 0/0:86,0:86:99:0,226,2808 0/0:104,0:104:99:0,280,3436 0/0:78,1:79:99:0,208,2568 0/0:87,0:87:99:0,217,2731 0/1:26,25:51:99:776,0,747 0/0:177,0:177:99:0,442,5584 0/0:105,0:105:99:0,274,3403 0/0:89,0:89:99:0,247,3049 0/0:106,0:106:99:0,283,3498 0/0:106,0:106:99:0,286,3507 0/0:122,0:122:99:0,298,3792 0/0:98,0:98:99:0,268,3262 0/0:79,0:79:99:0,220,2684 0/0:89,0:89:99:0,241,2980 0/0:80,0:80:99:0,226,2753 0/0:85,0:85:99:0,241,2944 1 59127086 . G A 9264.77 . AC=20;AF=0.238;AN=84;BaseQRankSum=-15.740;DP=1754;Dels=0.00;FS=8.664;HRun=1;HaplotypeScore=0.4364;InbreedingCoeff=-0.0500;MQ=59.40;MQ0=0;MQRankSum=0.728;QD=14.82;ReadPosRankSum=-0.987 GT:AD:DP:GQ:PL 0/0:32,0:32:90.29:0,90,1165 0/0:47,0:47:99:0,120,1583 0/0:32,0:32:87.25:0,87,1098 0/0:79,0:79:99:0,205,2814 0/0:77,0:77:99:0,226,3127 0/0:68,0:68:99:0,196,2630 0/0:78,0:78:99:0,211,2886 0/0:59,0:59:99:0,175,2359 0/0:48,0:48:99:0,129,1693 0/0:27,0:27:72.23:0,72,925 0/0:29,0:29:84.27:0,84,1092 0/1:10,5:15:99:117,0,307 0/0:43,0:43:99:0,120,1547 1/1:0,25:25:69.22:872,69,0 0/1:58,34:93:99:964,0,1498 0/1:10,14:24:99:457,0,251 0/1:14,19:33:99:515,0,404 0/0:32,0:32:87.28:0,87,1139 0/0:34,0:34:84.27:0,84,1103 0/0:43,0:43:99:0,123,1579 0/1:21,13:34:99:371,0,580 0/1:10,8:18:99:215,0,307 0/1:42,34:76:99:1103,0,1386 0/0:81,1:82:99:0,174,2815 0/0:50,0:50:99:0,132,1843 0/1:37,26:63:99:830,0,1273 0/0:26,0:26:75.23:0,75,944 0/1:10,15:25:99:475,0,236 0/0:35,0:35:99:0,99,1283 0/1:18,11:29:99:271,0,579 0/1:14,13:27:99:411,0,401 0/0:42,0:42:96.31:0,96,1288 0/1:13,13:26:99:404,0,417 0/0:35,0:35:96.31:0,96,1258 0/1:11,10:21:99:277,0,363 0/0:41,0:41:99:0,114,1450 0/0:50,0:50:99:0,120,1541 0/1:25,12:37:99:336,0,825 0/1:11,14:25:99:445,0,345 0/1:17,12:29:99:295,0,548 1/1:0,25:25:72.23:905,72,0 0/0:40,0:40:99:0,117,1497 1 59139251 . C T 305.82 . 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G T 373 . 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C A 106.48 . 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C T 5554.49 . 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G C 5168.27 . 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A G 2524.35 . 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G A 5907.69 . AC=6;AF=0.071;AN=84;BaseQRankSum=-6.909;DP=2939;Dels=0.00;FS=3.263;HRun=0;HaplotypeScore=1.2395;InbreedingCoeff=-0.0769;MQ=59.33;MQ0=0;MQRankSum=1.958;QD=14.44;ReadPosRankSum=0.172 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,126,1606 0/0:59,0:59:99:0,166,2071 0/0:50,0:50:99:0,132,1653 0/0:116,0:116:99:0,304,4075 0/1:46,55:101:99:1584,0,1380 0/0:72,1:74:99:0,159,2470 0/0:70,0:70:99:0,187,2471 0/0:85,0:85:99:0,208,2817 0/0:57,0:57:99:0,150,1937 0/0:70,1:71:99:0,159,2321 0/0:46,0:46:99:0,129,1658 0/0:49,0:49:99:0,126,1615 0/0:47,0:47:99:0,129,1629 0/1:28,18:46:99:456,0,845 0/0:188,0:188:99:0,478,6084 0/1:22,34:56:99:1011,0,592 0/0:69,2:71:99:0,130,2180 0/0:53,0:53:99:0,144,1804 0/0:85,0:85:99:0,220,2779 0/0:84,0:84:99:0,217,2765 0/0:86,0:86:99:0,220,2775 0/0:62,0:62:99:0,166,2139 0/0:121,0:121:99:0,313,4227 0/1:36,32:68:99:883,0,1062 0/1:36,42:78:99:1151,0,1056 0/0:62,0:62:99:0,159,2133 0/0:45,0:45:99:0,108,1405 0/0:54,0:54:99:0,141,1785 0/1:30,29:60:99:823,0,846 0/0:61,0:61:99:0,156,1961 0/0:69,0:69:99:0,187,2380 0/0:94,0:94:99:0,244,3152 0/0:51,0:51:99:0,144,1867 0/0:52,0:52:99:0,135,1713 0/0:70,0:70:99:0,190,2424 0/0:69,0:69:99:0,190,2388 0/0:92,0:92:99:0,238,2975 0/0:59,0:59:99:0,165,2066 0/0:49,0:49:99:0,138,1783 0/0:72,0:72:99:0,190,2432 0/0:61,0:61:99:0,153,1974 0/0:45,0:45:99:0,123,1568 1 62253583 . C A 694.51 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.748;DP=2661;Dels=0.00;FS=18.084;HRun=0;HaplotypeScore=2.6111;InbreedingCoeff=-0.0244;MQ=59.38;MQ0=0;MQRankSum=0.322;QD=8.37;ReadPosRankSum=1.334 GT:AD:DP:GQ:PL 0/0:46,1:47:82.57:0,83,1448 0/0:55,0:55:99:0,153,1892 0/0:38,0:38:93.28:0,93,1160 0/0:126,0:126:99:0,334,4393 0/0:117,0:117:99:0,295,3911 0/0:86,0:86:99:0,223,2880 0/0:59,1:60:99:0,168,2129 0/0:59,0:59:99:0,159,2033 0/0:54,0:54:99:0,147,1795 0/0:50,0:50:99:0,132,1646 0/0:56,0:56:99:0,144,1822 0/0:58,0:58:99:0,160,2028 0/0:51,1:52:99:0,104,1670 0/0:61,0:61:99:0,175,2187 0/0:151,0:151:99:0,394,4799 0/0:52,0:52:99:0,135,1702 0/0:42,0:42:99:0,114,1386 0/0:46,0:46:99:0,135,1664 0/0:67,0:68:99:0,159,1974 0/0:85,1:86:99:0,226,2809 0/0:66,0:66:99:0,183,2217 0/0:48,0:48:99:0,129,1553 0/0:129,0:129:99:0,340,4437 0/0:55,0:55:99:0,144,1875 0/0:79,0:79:99:0,211,2792 0/0:59,0:59:99:0,162,2065 0/0:56,0:56:99:0,144,1817 0/0:40,0:40:99:0,99,1272 0/0:49,0:49:99:0,132,1649 0/0:53,0:53:99:0,138,1744 0/0:49,0:50:99:0,132,1677 0/0:75,0:75:99:0,199,2534 0/0:58,1:59:99:0,162,1981 0/1:26,11:37:99:210,0,679 0/1:26,20:46:99:547,0,593 0/0:54,0:54:99:0,150,1873 0/0:65,0:65:99:0,169,2092 0/0:64,0:64:99:0,166,2098 0/0:51,0:51:99:0,144,1766 0/0:53,0:53:99:0,138,1750 0/0:47,0:47:99:0,126,1549 0/0:62,0:62:99:0,156,1951 1 62516683 . G C 61025.80 . AC=71;AF=0.845;AN=84;BaseQRankSum=19.015;DP=2225;Dels=0.00;FS=7.312;HRun=1;HaplotypeScore=0.9569;InbreedingCoeff=-0.0011;MQ=59.47;MQ0=0;MQRankSum=-1.697;QD=28.11;ReadPosRankSum=0.486 GT:AD:DP:GQ:PL 0/0:53,0:54:99:0,147,1715 0/1:26,25:51:99:614,0,736 1/1:0,36:36:84.27:1126,84,0 1/1:0,118:118:99:4143,304,0 0/1:54,42:96:99:1249,0,1512 1/1:0,104:104:99:3617,262,0 1/1:0,66:66:99:2293,166,0 1/1:0,77:77:99:2613,190,0 1/1:0,26:26:72.23:937,72,0 0/1:22,17:39:99:549,0,580 0/1:12,16:28:99:508,0,288 1/1:0,38:38:99:1339,105,0 1/1:0,39:39:99:1397,108,0 0/1:32,11:43:99:276,0,869 1/1:0,132:132:99:4196,316,0 1/1:0,26:26:72.23:935,72,0 1/1:0,50:51:99:1675,129,0 0/1:24,13:37:99:374,0,602 1/1:0,47:47:99:1531,120,0 1/1:0,53:53:99:1713,132,0 1/1:0,47:47:99:1522,117,0 1/1:0,34:34:84.27:1112,84,0 0/1:71,55:127:99:1714,0,2052 1/1:0,77:77:99:2418,175,0 1/1:1,79:80:99:2569,151,0 1/1:0,79:79:99:2701,199,0 1/1:1,32:33:46.48:1043,46,0 1/1:0,31:31:84.27:1087,84,0 1/1:0,27:27:81.24:1012,81,0 1/1:0,35:36:99:1273,99,0 1/1:0,36:36:99:1284,99,0 1/1:0,51:51:99:1597,120,0 1/1:1,27:28:38.80:882,39,0 0/1:17,19:36:99:568,0,459 1/1:0,48:48:99:1606,123,0 0/1:26,19:45:99:565,0,726 1/1:0,50:50:99:1645,126,0 1/1:0,46:46:99:1537,117,0 0/1:21,22:43:99:716,0,534 1/1:0,48:48:99:1525,114,0 0/1:14,15:29:99:411,0,390 1/1:0,33:33:90.27:1155,90,0 1 62718788 . A C 35.58 . AC=1;AF=0.012;AN=84;BaseQRankSum=-34.836;DP=5503;DS;Dels=0.00;FS=723.268;HRun=1;HaplotypeScore=1.8249;InbreedingCoeff=-0.0183;MQ=59.33;MQ0=1;MQRankSum=1.182;QD=0.27;ReadPosRankSum=-23.698 GT:AD:DP:GQ:PL 0/0:81,27:108:99:0,106,2534 0/0:69,31:100:99:0,110,2056 0/0:64,27:91:99:0,117,1984 0/0:164,81:245:99:0,391,5080 0/0:148,102:250:99:0,185,4590 0/0:163,59:222:99:0,388,5252 0/0:138,50:188:99:0,287,4151 0/0:142,62:205:99:0,297,4469 0/0:56,28:84:2.96:0,0,1572 0/0:62,30:92:99:0,126,1894 0/0:69,22:91:99:0,138,2032 0/0:79,27:106:99:0,155,2384 0/0:53,21:74:99:0,117,1617 0/0:64,28:92:38.18:0,38,1943 0/0:153,97:250:99:0,141,4394 0/0:52,20:72:96.05:0,96,1567 0/0:57,33:90:49.27:0,49,1781 0/0:65,23:88:99:0,147,1975 0/0:117,49:166:57.76:0,58,3575 0/0:152,44:196:99:0,319,4724 0/0:104,39:143:24.95:0,25,3072 0/0:77,26:103:99:0,159,2288 0/0:135,100:235:99:0,144,4063 0/0:128,62:190:99:0,325,4236 0/0:144,63:207:99:0,290,4584 0/0:129,44:173:99:0,187,3958 0/0:53,23:76:99:0,138,1615 0/0:76,34:110:76.43:0,76,2104 0/0:53,27:80:36.03:0,36,1694 0/0:62,32:94:73:0,73,1977 0/0:51,23:74:70.99:0,71,1628 0/0:133,36:169:99:0,293,3821 0/0:91,34:125:99:0,188,2661 0/0:80,22:103:99:0,186,2381 0/0:65,25:90:99:0,129,2011 0/0:90,18:109:99:0,194,2829 0/1:81,49:130:81.68:82,0,2361 0/0:82,27:109:72.81:0,73,2374 0/0:70,27:97:99:0,125,2206 0/0:64,28:92:99:0,104,2058 0/0:55,21:76:99:0,101,1756 0/0:74,33:108:99:0,184,2420 1 62734020 . T G 106.73 . AC=4;AF=0.048;AN=84;BaseQRankSum=-17.675;DP=1362;Dels=0.00;FS=138.869;HRun=2;HaplotypeScore=1.3652;InbreedingCoeff=-0.0637;MQ=58.56;MQ0=0;MQRankSum=-1.035;QD=0.54;ReadPosRankSum=-6.826 GT:AD:DP:GQ:PL 0/0:15,8:23:42.10:0,42,468 0/0:12,6:18:33.08:0,33,358 0/0:15,9:24:42.12:0,42,487 0/0:55,18:74:99:0,142,1642 0/1:30,23:53:69.18:69,0,899 0/0:39,11:50:77.58:0,78,1123 0/0:26,17:43:38.40:0,38,679 0/0:28,7:35:32.55:0,33,667 0/0:17,6:23:48.12:0,48,545 0/0:16,10:26:48.13:0,48,547 0/0:17,4:21:45.12:0,45,515 0/0:14,9:24:18.44:0,18,451 0/0:10,2:13:27.07:0,27,311 0/0:23,4:27:39.44:0,39,667 0/1:46,27:74:19.44:19,0,1209 0/0:19,9:28:23.55:0,24,556 0/1:21,13:34:29.81:30,0,623 0/0:15,6:21:14.70:0,15,494 0/0:19,11:30:22.80:0,23,588 0/0:17,12:29:45.07:0,45,480 0/0:30,18:49:49.64:0,50,858 0/0:25,10:35:52.42:0,52,742 0/0:58,24:83:99:0,134,1763 0/0:29,10:39:78.18:0,78,915 0/0:41,6:48:99:0,111,1287 0/0:20,8:28:51.14:0,51,586 0/0:15,3:18:39.08:0,39,445 0/0:27,3:30:75.20:0,75,857 0/0:11,9:20:30.09:0,30,362 0/0:16,6:22:42.11:0,42,484 0/0:15,6:21:39.11:0,39,450 0/0:28,11:39:81.21:0,81,911 0/0:28,7:35:75.14:0,75,823 0/0:15,4:20:33.07:0,33,369 0/0:13,8:21:14.41:0,14,398 0/0:20,8:28:54.12:0,54,601 0/1:24,13:37:73.78:74,0,619 0/0:12,12:24:2.67:0,3,359 0/0:9,6:16:27.04:0,27,283 0/0:22,6:28:7.86:0,8,554 0/0:18,8:26:0.89:0,1,510 0/0:18,7:25:28.46:0,28,579 1 62734089 . C T 5572.24 . AC=6;AF=0.071;AN=84;BaseQRankSum=-0.730;DP=2686;Dels=0.00;FS=1.221;HRun=0;HaplotypeScore=1.5089;InbreedingCoeff=-0.0769;MQ=59.12;MQ0=0;MQRankSum=1.163;QD=13.69;ReadPosRankSum=-1.050 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,135,1670 0/0:46,0:46:99:0,129,1558 0/0:53,0:53:99:0,147,1823 0/0:128,0:128:99:0,337,4394 0/0:120,0:120:99:0,337,4308 0/0:103,0:103:99:0,277,3603 0/0:88,0:88:99:0,244,3167 0/0:95,0:95:99:0,265,3391 0/0:47,0:47:99:0,129,1568 0/0:47,0:47:99:0,135,1613 0/0:28,0:28:81.24:0,81,983 0/0:34,0:34:99:0,99,1181 0/0:36,0:36:96.27:0,96,1146 0/0:58,0:58:99:0,162,1948 0/1:69,80:149:99:2256,0,1691 0/0:50,0:50:99:0,144,1673 0/1:24,26:50:99:800,0,643 0/0:38,0:38:99:0,108,1289 0/0:86,0:87:99:0,217,2652 0/0:110,0:110:99:0,286,3493 0/1:42,33:75:99:894,0,1090 0/1:24,23:47:99:613,0,682 0/0:151,0:151:99:0,406,5247 0/0:77,0:77:99:0,205,2616 0/0:90,0:90:99:0,244,3164 0/0:72,0:72:99:0,190,2433 0/0:36,0:36:96.26:0,96,1128 0/0:41,0:41:99:0,117,1370 0/0:38,0:38:99:0,99,1189 0/0:41,0:41:99:0,120,1412 0/0:44,0:44:99:0,114,1438 0/0:90,0:90:99:0,226,2760 0/0:47,0:47:99:0,123,1480 0/0:46,0:46:99:0,120,1479 0/0:49,0:49:99:0,132,1563 0/0:47,0:47:99:0,126,1572 0/0:75,0:75:99:0,174,2132 0/0:48,0:48:99:0,123,1543 0/0:31,0:31:87.22:0,87,986 0/1:28,19:47:99:535,0,834 0/0:37,0:37:99:0,105,1245 0/1:22,17:39:99:475,0,631 1 62923219 . T G 895.23 . AC=18;AF=0.214;AN=84;BaseQRankSum=-37.977;DP=4315;DS;Dels=0.00;FS=1196.689;HRun=2;HaplotypeScore=1.8357;InbreedingCoeff=-0.2921;MQ=59.00;MQ0=0;MQRankSum=-0.894;QD=0.48;ReadPosRankSum=-14.701 GT:AD:DP:GQ:PL 0/0:45,29:74:8:0,8,1303 0/1:32,52:84:99:161,0,899 0/0:39,33:73:13.24:0,13,1060 0/1:72,105:177:56.53:57,0,2095 0/1:87,98:187:4.69:5,0,2648 0/0:96,93:192:99:0,124,2845 0/0:70,82:152:41.66:0,42,2029 0/0:83,86:169:45.02:0,45,2438 0/1:38,39:77:81.18:81,0,1025 0/0:33,27:60:37.59:0,38,965 0/0:22,38:60:12.99:0,13,725 0/0:43,39:82:34.59:0,35,1301 0/0:40,24:65:41.20:0,41,1151 0/0:43,34:77:51.97:0,52,1200 0/0:130,101:231:37.30:0,37,3907 0/1:26,33:59:31:31,0,710 0/0:38,32:71:65.98:0,66,1232 0/1:48,48:97:37.65:38,0,1470 0/1:67,47:114:99:142,0,1825 0/0:57,57:114:99:0,153,1800 0/1:41,47:88:58:58,0,1175 0/0:36,32:68:51.92:0,52,1112 0/1:112,112:224:50.16:50,0,3428 0/0:84,96:181:60.06:0,60,2405 0/0:95,77:172:99:0,145,2838 0/1:78,74:153:30.68:31,0,2302 0/1:33,37:70:12.12:12,0,985 0/0:31,32:64:52.68:0,53,900 0/0:40,25:66:26.50:0,27,1096 0/0:43,35:78:99:0,103,1437 0/1:36,44:80:74.33:74,0,1120 0/0:57,51:109:99:0,104,1772 0/0:21,33:54:1.59:0,2,623 0/0:37,40:77:2.88:0,0,971 0/0:43,30:73:64.01:0,64,1323 0/1:34,34:68:35.89:36,0,901 0/1:47,45:93:48.84:49,0,1378 0/1:38,40:78:52.93:53,0,1176 0/1:44,38:82:59.36:59,0,1306 0/0:35,35:70:7.68:0,8,994 0/1:32,36:68:70.27:70,0,930 0/1:40,44:84:49.80:50,0,1134 1 62953070 . T C 692.89 . 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T C 1863.86 . 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C T 509.23 . 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C A 794.63 . 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T G 200.64 . 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G A 1036.68 . 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G A 4170.23 . 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A G 34921.53 . 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G A 18470.19 . 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G A 1460.64 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.295;DP=3248;DS;Dels=0.00;FS=2.817;HRun=0;HaplotypeScore=1.4330;InbreedingCoeff=-0.0244;MQ=59.42;MQ0=0;MQRankSum=-0.628;QD=15.22;ReadPosRankSum=-2.012 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,150,1915 0/0:66,0:66:99:0,172,2197 0/0:46,0:46:99:0,135,1676 0/0:136,0:136:99:0,361,4764 0/0:115,1:116:99:0,271,3989 0/0:109,0:109:99:0,301,3971 0/0:82,0:82:99:0,229,3014 0/0:107,1:109:99:0,261,3787 0/0:48,0:48:99:0,135,1630 0/0:71,0:71:99:0,196,2454 0/0:49,0:49:99:0,147,1822 0/1:31,29:60:99:858,0,961 0/1:15,21:36:99:665,0,392 0/0:70,0:70:99:0,199,2513 0/0:208,0:209:99:0,566,7107 0/0:53,0:53:99:0,147,1860 0/0:60,0:60:99:0,153,1930 0/0:51,0:51:99:0,141,1793 0/0:92,0:93:99:0,256,3183 0/0:89,0:89:99:0,250,3159 0/0:90,0:90:99:0,262,3278 0/0:56,0:56:99:0,147,1873 0/0:125,0:125:99:0,343,4533 0/0:94,0:94:99:0,250,3293 0/0:110,0:110:99:0,307,4112 0/0:101,0:101:99:0,268,3590 0/0:41,1:42:99:0,101,1495 0/0:51,0:51:99:0,132,1667 0/0:71,0:71:99:0,202,2506 0/0:57,0:57:99:0,165,2061 0/0:47,0:47:99:0,129,1601 0/0:122,0:122:99:0,337,4310 0/0:50,0:50:99:0,135,1714 0/0:67,0:67:99:0,196,2468 0/0:68,0:68:99:0,190,2356 0/0:59,0:59:99:0,169,2109 0/0:106,0:106:99:0,286,3548 0/0:66,0:66:99:0,175,2204 0/0:65,0:65:99:0,190,2375 0/0:68,0:68:99:0,199,2479 0/0:56,0:56:99:0,163,2053 0/0:69,0:69:99:0,196,2465 1 67299363 . C G 10 . AC=2;AF=0.024;AN=84;BaseQRankSum=-13.934;DP=1740;Dels=0.00;FS=948.286;HRun=1;HaplotypeScore=0.8629;InbreedingCoeff=-0.0421;MQ=58.96;MQ0=0;MQRankSum=0.245;QD=0.15;ReadPosRankSum=-13.994 GT:AD:DP:GQ:PL 0/0:22,9:31:36.86:0,37,779 0/0:22,8:30:42.54:0,43,818 0/0:19,8:27:24.05:0,24,636 0/0:39,19:58:57.53:0,58,1451 0/0:49,13:62:99:0,144,1930 0/0:45,22:67:82.75:0,83,1468 0/0:28,9:37:75.25:0,75,1032 0/0:40,23:63:53.37:0,53,1451 0/0:37,11:48:67.54:0,68,1274 0/0:22,4:26:25.84:0,26,701 0/0:19,8:27:14.50:0,15,579 0/0:27,11:38:20.24:0,20,944 0/0:18,13:31:4.34:0,4,474 0/0:29,10:39:55.89:0,56,999 0/0:78,28:106:99:0,216,2716 0/0:22,6:28:0.74:0,1,703 0/0:14,4:18:42.13:0,42,534 0/0:23,12:35:2.01:0,2,649 0/0:33,11:44:35.78:0,36,1095 0/0:34,18:52:57.97:0,58,1095 0/0:28,7:35:20:0,20,933 0/0:22,3:25:59.22:0,59,739 0/0:45,25:70:90.29:0,90,1668 0/0:46,25:71:99:0,108,1720 0/0:40,13:53:86.05:0,86,1608 0/0:26,19:45:20.16:0,20,958 0/1:15,6:21:25.68:26,0,489 0/0:29,11:40:26.26:0,26,1006 0/0:24,6:30:72.14:0,72,894 0/0:22,8:30:33.38:0,33,747 0/0:26,17:43:76.64:0,77,936 0/0:36,10:46:92.77:0,93,1194 0/0:19,9:28:54.17:0,54,690 0/0:24,6:30:13.47:0,13,869 0/0:32,11:43:57.97:0,58,1086 0/1:27,16:44:45.36:45,0,892 0/0:35,12:47:41:0,41,1236 0/0:22,13:35:7.02:0,7,713 0/0:23,13:36:37.62:0,38,833 0/0:22,12:34:36.59:0,37,777 0/0:26,7:33:68.43:0,68,853 0/0:25,9:34:72.23:0,72,927 1 67313249 . G A 2446.52 . AC=4;AF=0.048;AN=84;BaseQRankSum=-8.948;DP=2449;Dels=0.00;FS=8.014;HRun=2;HaplotypeScore=0.6016;InbreedingCoeff=-0.0500;MQ=59.48;MQ0=0;MQRankSum=1.194;QD=12.11;ReadPosRankSum=0.438 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,126,1596 0/0:47,0:47:99:0,132,1655 0/0:42,0:42:99:0,126,1586 0/0:75,0:75:99:0,196,2666 0/0:94,0:94:99:0,253,3451 0/0:95,0:95:99:0,250,3397 0/0:74,0:74:99:0,214,2886 0/0:98,0:98:99:0,271,3672 0/0:47,0:47:99:0,135,1721 0/0:40,0:40:99:0,114,1392 0/0:52,0:52:99:0,144,1849 0/0:45,0:45:99:0,135,1650 0/0:53,0:53:99:0,144,1803 0/0:34,0:34:93.28:0,93,1161 0/0:166,0:166:99:0,421,5422 0/0:33,0:33:96.30:0,96,1192 0/0:57,0:57:99:0,156,1969 0/0:53,0:53:99:0,144,1833 0/0:57,0:57:99:0,150,1886 0/0:78,0:78:99:0,199,2505 0/0:80,0:80:99:0,205,2585 0/0:39,0:39:99:0,102,1296 0/0:94,0:94:99:0,268,3628 0/0:79,0:79:99:0,220,2996 0/0:70,0:70:99:0,208,2809 0/0:69,0:69:99:0,193,2581 0/0:38,0:38:99:0,99,1255 0/0:54,0:54:99:0,150,1906 0/0:40,0:40:99:0,111,1383 0/0:46,0:46:99:0,129,1637 0/0:40,0:40:99:0,117,1500 0/0:53,0:53:99:0,141,1809 0/0:39,0:39:99:0,102,1288 0/0:39,0:39:99:0,111,1390 0/0:42,0:42:99:0,117,1490 0/0:48,0:48:99:0,129,1603 0/1:33,26:59:99:728,0,946 0/1:36,18:54:99:485,0,1081 0/0:57,0:57:99:0,156,1973 0/1:22,26:48:99:810,0,618 0/1:22,19:41:99:510,0,701 0/0:35,0:35:93.27:0,93,1172 1 67633812 . G T 77443.14 . AC=55;AF=0.655;AN=84;BaseQRankSum=-46.117;DP=4319;DS;Dels=0.00;FS=16.652;HRun=0;HaplotypeScore=0.9737;InbreedingCoeff=-0.1060;MQ=59.65;MQ0=0;MQRankSum=0.461;QD=20.93;ReadPosRankSum=-0.809 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2247,187,0 0/1:41,30:71:99:814,0,1100 0/0:58,0:58:99:0,157,2056 1/1:0,222:222:99:7105,569,0 1/1:2,213:215:99:7315,551,0 0/0:250,0:250:99:0,650,8960 0/1:109,93:202:99:2465,0,3553 0/1:112,84:197:99:2382,0,3546 1/1:0,65:65:99:2216,187,0 0/1:36,29:65:99:825,0,1074 0/1:41,41:82:99:1097,0,1179 0/1:32,21:53:99:600,0,976 1/1:0,57:57:99:2009,169,0 0/1:46,23:69:99:532,0,1449 0/1:127,123:250:99:3303,0,3600 0/1:32,21:53:99:570,0,978 0/1:36,32:68:99:870,0,1130 1/1:0,50:50:99:1709,141,0 1/1:0,75:75:99:2355,190,0 1/1:0,77:77:99:2509,202,0 0/0:113,0:113:99:0,277,3660 0/1:26,16:42:99:459,0,784 1/1:1,234:235:99:7392,552,0 0/0:198,0:198:99:0,518,7143 0/1:104,87:191:99:2386,0,3314 0/1:107,94:201:99:2586,0,3472 0/1:35,21:56:99:515,0,1064 0/1:42,28:70:99:712,0,1264 1/1:0,50:50:99:1608,132,0 1/1:0,77:77:99:2598,214,0 1/1:0,54:54:99:1798,147,0 0/1:41,44:85:99:1301,0,1045 1/1:0,52:52:99:1703,141,0 1/1:1,67:68:99:2238,151,0 1/1:2,70:72:99:2260,121,0 0/1:45,46:91:99:1271,0,1336 0/1:51,32:83:99:813,0,1533 0/1:36,37:73:99:1002,0,1091 0/1:42,33:75:99:902,0,1177 1/1:0,75:75:99:2489,205,0 1/1:0,52:52:99:1732,144,0 0/1:32,29:61:99:759,0,936 1 67685387 . T C 130234.79 . AC=70;AF=0.833;AN=84;BaseQRankSum=-19.910;DP=5328;DS;Dels=0.00;FS=4.273;HRun=1;HaplotypeScore=2.9165;InbreedingCoeff=-0.2000;MQ=59.43;MQ0=0;MQRankSum=-0.012;QD=24.44;ReadPosRankSum=-0.314 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2741,241,0 1/1:0,101:101:99:3003,271,0 1/1:0,81:81:99:2451,214,0 1/1:0,221:221:99:7105,563,0 1/1:0,176:176:99:5689,448,0 1/1:0,234:234:99:7314,581,0 1/1:0,199:201:99:6395,506,0 1/1:0,173:173:99:5519,430,0 1/1:0,108:108:99:3401,301,0 1/1:0,79:79:99:2415,217,0 1/1:0,95:95:99:3016,271,0 1/1:0,84:84:99:2634,232,0 1/1:0,100:100:99:3073,271,0 1/1:0,80:80:99:2591,229,0 0/1:135,114:250:99:2679,0,3713 0/1:27,27:54:99:715,0,750 0/1:60,48:108:99:1227,0,1641 1/1:0,109:109:99:3485,310,0 1/1:0,141:141:99:4289,382,0 1/1:0,158:158:99:4860,409,0 0/1:88,61:149:99:1420,0,2470 0/1:46,48:95:99:1234,0,1345 0/1:115,123:239:99:3363,0,3117 0/1:103,98:201:99:2803,0,2863 0/1:103,84:187:99:2283,0,2911 1/1:0,165:165:99:5126,409,0 0/1:38,51:89:99:1371,0,1013 0/1:60,60:120:99:1567,0,1662 1/1:0,85:85:99:2712,238,0 1/1:0,96:96:99:3013,268,0 0/1:49,39:88:99:996,0,1425 1/1:1,151:152:99:4457,359,0 1/1:0,111:111:99:3410,295,0 1/1:0,109:109:99:3425,304,0 1/1:0,90:90:99:2674,232,0 1/1:0,99:99:99:2924,256,0 0/1:77,66:143:99:1503,0,2085 0/1:49,51:100:99:1350,0,1331 0/1:36,45:81:99:1195,0,983 1/1:0,121:121:99:3630,319,0 1/1:0,87:88:99:2666,238,0 1/1:0,78:78:99:2512,226,0 1 70616830 . T C 726.29 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.680;DP=1447;Dels=0.00;FS=0.743;HRun=1;HaplotypeScore=0.5466;InbreedingCoeff=-0.0244;MQ=59.39;MQ0=0;MQRankSum=0.162;QD=15.13;ReadPosRankSum=-0.272 GT:AD:DP:GQ:PL 0/0:31,0:31:78.24:0,78,981 0/0:33,0:33:75.23:0,75,959 0/0:20,0:20:51.16:0,51,637 0/0:59,1:60:99:0,150,1901 0/0:35,0:35:93.30:0,93,1194 0/0:37,0:37:96.30:0,96,1247 0/0:48,0:49:99:0,117,1541 0/0:53,0:53:99:0,132,1694 0/0:25,0:25:54.17:0,54,717 0/0:18,0:18:45.13:0,45,557 0/0:20,0:20:54.17:0,54,662 0/0:27,0:27:72.22:0,72,886 0/0:35,0:35:90.28:0,90,1115 0/0:21,0:21:54.17:0,54,685 0/0:113,0:113:99:0,271,3417 0/0:18,0:18:42.12:0,42,514 0/0:26,0:26:63.20:0,63,802 0/0:30,0:30:84.26:0,84,1030 0/0:27,0:27:66.21:0,66,841 0/0:42,0:42:99:0,108,1376 0/0:45,0:45:99:0,114,1446 0/0:27,0:27:69.20:0,69,845 0/0:69,0:69:99:0,172,2203 0/0:51,0:51:99:0,132,1696 0/0:83,0:83:99:0,184,2428 0/0:40,0:40:99:0,99,1285 0/1:9,11:20:99:334,0,241 0/1:14,14:28:99:455,0,374 0/0:26,0:26:63.20:0,63,797 0/0:23,0:23:60.18:0,60,744 0/0:23,0:23:63.19:0,63,772 0/0:46,0:46:99:0,108,1405 0/0:27,0:27:72.22:0,72,887 0/0:22,0:22:63.20:0,63,782 0/0:22,0:22:54.17:0,54,692 0/0:40,0:40:99:0,105,1318 0/0:22,0:22:63.20:0,63,775 0/0:24,0:24:69.22:0,69,854 0/0:16,0:16:45.14:0,45,552 0/0:30,0:30:81.25:0,81,1001 0/0:23,0:23:63.19:0,63,769 0/0:20,0:20:51.16:0,51,635 1 70700401 . C G 6.52 . 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A C 1992.02 . 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G A 2784.56 . 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G A 5.17 . 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A G 3966.38 . 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G A 77835.77 . 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G T 8580.82 . 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C G 32.92 . 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C T 12980.10 . 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TCTC T 3117.48 . 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C T 90432.78 . 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A G 52830.37 . 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T C 89891.44 . 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T G 792.42 . 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G A 7120.96 . 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A C 5116.29 . 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T G 1093.43 . 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G C 11705.19 . 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A T 7430.82 . 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T C 704.99 . 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C A 2225.51 . 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T C 129358.08 . 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G A 853.44 . 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T C 6417.56 . 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G A 13324.26 . 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C T 12818.66 . 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C T 10574.93 . 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G A 20442.14 . 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T A 1877.84 . 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C T 12875.16 . 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G T 2495.88 . 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T C 75863.17 . 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C T 1874.04 . 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C T 651.90 . 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T C 15385.40 . 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A C 180.66 . 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T C 7653.85 . 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T C 91297.56 . 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T C 1184.98 . AC=17;AF=0.202;AN=84;BaseQRankSum=-33.412;DP=3666;Dels=0.00;FS=3200.000;HRun=2;HaplotypeScore=2.0722;InbreedingCoeff=-0.2655;MQ=59.31;MQ0=0;MQRankSum=1.174;QD=0.96;ReadPosRankSum=-27.898 GT:AD:DP:GQ:PL 0/1:49,24:73:16.67:17,0,1520 0/1:50,30:80:56.96:57,0,1549 0/1:50,17:67:81.56:82,0,1556 0/1:123,83:206:69.62:70,0,3705 0/0:117,68:185:99:0,115,3868 0/0:87,53:140:10.96:0,11,2991 0/0:75,32:107:99:0,122,2628 0/0:71,36:107:68.26:0,68,2477 0/0:34,16:50:77.10:0,77,1157 0/1:40,18:58:30.63:31,0,1143 0/1:40,26:66:99:111,0,1274 0/1:46,21:67:99:125,0,1323 0/1:42,23:65:99:107,0,1326 0/0:43,8:51:59.70:0,60,1348 0/0:151,62:215:99:0,112,4785 0/1:35,14:49:13.85:14,0,1084 0/0:47,21:68:66.66:0,67,1583 0/1:30,26:56:99:151,0,913 0/1:57,34:92:94.31:94,0,1798 0/0:57,29:86:29.26:0,29,1662 0/0:64,31:95:9.98:0,10,1827 0/0:46,18:64:15.43:0,15,1367 0/0:117,69:186:17.73:0,18,3634 0/0:98,47:145:72.92:0,73,3079 0/0:73,38:112:99:0,159,2493 0/0:77,50:127:99:0,132,2634 0/0:49,14:63:9.37:0,9,1462 0/0:54,16:71:91.97:0,92,1664 0/0:34,16:50:10.88:0,11,1140 0/1:37,24:61:99:141,0,1170 0/1:29,15:44:99:136,0,959 0/0:66,31:98:63.65:0,64,1894 0/0:42,23:65:68.13:0,68,1244 0/1:36,23:59:99:147,0,1054 0/1:50,21:71:26.78:27,0,1499 0/0:59,25:84:13.08:0,13,1818 0/0:48,18:66:4.58:0,5,1419 0/1:44,27:71:25.90:26,0,1353 0/0:44,20:64:14.49:0,14,1360 0/0:48,20:68:25.92:0,26,1519 0/0:46,18:64:99:0,111,1658 0/1:33,17:50:13.58:14,0,1045 1 89474818 . A G 18915.55 . 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G C 119894.52 . 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T C 2454.54 . 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T G 46142.95 . 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G A 1338.06 . 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T C 5891.23 . 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G A 7832.04 . 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T C 2167.36 . 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G A 14969.69 . 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T C 75013.32 . 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C A 111319.06 . 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G C 667.40 . 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G GC 159.89 . 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G A 2170.75 . 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G A 631.23 . 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T C 123988.31 . AC=75;AF=0.893;AN=84;BaseQRankSum=17.889;DP=3698;Dels=0.00;FS=0.228;HRun=1;HaplotypeScore=1.3120;InbreedingCoeff=0.1289;MQ=59.64;MQ0=0;MQRankSum=-1.700;QD=34.33;ReadPosRankSum=0.178 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2883,226,0 1/1:0,82:82:99:2966,232,0 1/1:1,54:56:99:1949,122,0 1/1:0,142:142:99:5397,397,0 1/1:0,132:132:99:5256,382,0 1/1:0,136:136:99:5229,385,0 1/1:0,106:106:99:3956,289,0 1/1:0,100:100:99:3983,292,0 0/0:86,0:86:99:0,235,2948 0/1:32,37:69:99:1145,0,898 0/1:19,41:60:99:1372,0,506 1/1:0,78:78:99:2891,226,0 1/1:0,66:66:99:2444,193,0 1/1:0,72:72:99:2649,208,0 1/1:0,232:233:99:8202,638,0 1/1:0,57:57:99:2035,160,0 1/1:0,81:81:99:2904,226,0 1/1:0,69:69:99:2414,187,0 1/1:0,90:90:99:3299,256,0 1/1:0,88:88:99:3132,244,0 1/1:0,94:94:99:3374,265,0 1/1:0,65:65:99:2327,184,0 1/1:0,154:154:99:6050,439,0 1/1:0,97:98:99:3808,280,0 1/1:0,106:106:99:4271,310,0 1/1:0,84:84:99:3264,241,0 1/1:0,54:54:99:1950,150,0 1/1:0,70:70:99:2604,205,0 1/1:0,77:77:99:2814,223,0 1/1:0,65:65:99:2353,184,0 1/1:0,75:75:99:2770,220,0 1/1:0,109:109:99:3778,292,0 0/1:45,38:83:99:1150,0,1337 1/1:0,77:77:99:2758,217,0 1/1:0,58:58:99:2148,169,0 1/1:0,93:93:99:3482,271,0 1/1:0,99:99:99:3628,286,0 0/1:37,43:80:99:1282,0,1075 1/1:0,69:70:99:2419,190,0 0/1:31,43:74:99:1373,0,861 0/1:29,32:61:99:1030,0,821 0/1:31,40:71:99:1250,0,905 1 93680482 . C T 545.40 . 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C T 59.98 . AC=4;AF=0.048;AN=84;BaseQRankSum=-13.687;DP=2339;Dels=0.00;FS=138.107;HRun=2;HaplotypeScore=1.1124;InbreedingCoeff=-0.0739;MQ=59.07;MQ0=0;MQRankSum=-1.015;QD=0.28;ReadPosRankSum=-8.895 GT:AD:DP:GQ:PL 0/0:56,12:68:85.37:0,85,1149 0/0:38,10:48:4.92:0,5,853 0/0:28,3:31:60.07:0,60,704 0/0:55,13:68:69.08:0,69,1352 0/0:64,14:78:99:0,126,1514 0/0:69,6:75:99:0,159,1892 0/0:53,5:58:55.14:0,55,1108 0/0:66,5:71:99:0,120,1593 0/1:34,13:47:9.33:9,0,755 0/0:39,9:48:1.06:6,0,751 0/0:43,7:50:66.53:0,67,973 0/0:48,8:56:80.52:0,81,1119 0/1:41,8:49:39.49:39,0,857 0/0:41,6:47:90.15:0,90,1011 0/0:97,25:122:99:0,111,2404 0/0:39,4:43:72.43:0,72,960 0/0:36,5:41:75.16:0,75,855 0/0:42,7:49:43.07:0,43,975 0/1:41,16:59:31.13:31,0,703 0/0:68,7:75:99:0,156,1899 0/0:47,23:71:5.08:0,5,1155 0/0:53,7:60:60.22:0,60,1134 0/0:64,10:74:99:0,106,1530 0/0:40,5:46:72.19:0,72,878 0/0:46,1:47:89.54:0,90,1268 0/0:42,4:46:65.54:0,66,986 0/0:33,4:37:19.03:0,19,753 0/1:48,14:62:60.69:61,0,1115 0/0:39,8:47:45.05:0,45,861 0/0:36,7:43:2.35:1,0,869 0/0:28,8:36:27.75:0,28,707 0/0:51,4:55:92.27:0,92,1121 0/0:32,4:36:75.15:0,75,855 0/0:47,15:62:59.03:0,59,1152 0/0:55,14:69:19.35:0,19,1256 0/0:48,9:58:60.11:0,60,1156 0/0:54,12:66:62.43:0,62,1298 0/0:46,5:51:53.81:0,54,1077 0/0:45,6:52:68.84:0,69,1103 0/0:37,5:42:60.59:0,61,989 0/0:34,7:41:19.79:0,20,699 0/0:48,7:55:99:0,111,1243 1 93826178 . A T 2400.16 . AC=3;AF=0.036;AN=84;BaseQRankSum=-9.536;DP=2400;Dels=0.00;FS=1.383;HRun=0;HaplotypeScore=0.6336;InbreedingCoeff=-0.0370;MQ=59.25;MQ0=0;MQRankSum=0.158;QD=14.72;ReadPosRankSum=-1.563 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,126,1591 0/1:29,22:51:99:608,0,844 0/1:23,30:53:99:882,0,654 0/0:73,0:73:99:0,187,2439 0/0:83,0:83:99:0,223,2919 0/0:61,0:61:99:0,160,2161 0/0:50,0:50:99:0,129,1729 0/0:59,0:59:99:0,153,2032 0/0:42,0:42:99:0,117,1455 0/0:58,0:58:99:0,156,1960 0/0:61,0:61:99:0,160,2025 0/0:64,0:64:99:0,172,2200 0/0:36,0:36:99:0,102,1287 0/0:40,0:40:99:0,114,1453 0/0:166,0:166:99:0,436,5594 0/0:30,0:31:90.28:0,90,1122 0/0:49,0:49:99:0,144,1798 0/0:43,0:43:99:0,120,1512 0/0:64,0:64:99:0,175,2216 0/0:66,0:66:99:0,181,2308 0/0:72,0:72:99:0,202,2556 0/0:41,0:41:99:0,111,1394 0/0:85,0:85:99:0,220,2884 0/0:71,0:71:99:0,187,2466 0/0:75,0:75:99:0,190,2533 0/0:66,1:67:99:0,119,2008 0/0:36,0:36:99:0,99,1249 0/0:45,0:45:99:0,123,1568 0/0:43,0:43:99:0,111,1441 0/0:45,0:45:99:0,123,1565 0/0:41,0:41:99:0,120,1507 0/0:60,0:60:99:0,153,1967 0/0:44,0:44:99:0,120,1518 0/0:38,0:38:99:0,111,1399 0/0:47,0:47:99:0,135,1681 0/1:25,34:59:99:986,0,751 0/0:76,0:76:99:0,205,2617 0/0:49,0:49:99:0,132,1672 0/0:54,0:54:99:0,156,1982 0/0:53,0:53:99:0,153,1925 0/0:45,1:46:85.59:0,86,1496 0/0:55,0:55:99:0,157,1997 1 93988997 . G A 363.57 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.666;DP=1326;Dels=0.00;FS=2.045;HRun=0;HaplotypeScore=0.9916;InbreedingCoeff=-0.0120;MQ=59.43;MQ0=0;MQRankSum=-0.841;QD=12.98;ReadPosRankSum=-1.465 GT:AD:DP:GQ:PL 0/0:29,0:29:78.25:0,78,989 0/0:26,0:26:72.22:0,72,910 0/0:33,0:33:87.27:0,87,1102 0/0:28,0:28:78.26:0,78,1049 0/0:27,0:27:75.25:0,75,1017 0/0:25,0:25:60.20:0,60,835 0/0:27,0:27:78.25:0,78,1043 0/0:34,0:34:99:0,99,1300 0/0:40,0:40:99:0,108,1365 0/0:31,0:31:81.26:0,81,1036 0/0:27,0:27:69.22:0,69,875 0/0:27,0:27:72.21:0,72,886 0/0:19,0:19:48.15:0,48,622 0/0:22,0:22:60.19:0,60,761 0/0:92,0:92:99:0,244,3106 0/0:23,0:23:57.18:0,57,738 0/1:12,16:28:99:410,0,321 0/0:23,0:23:69.22:0,69,865 0/0:43,0:43:99:0,114,1481 0/0:49,0:49:99:0,138,1751 0/0:47,0:47:99:0,129,1621 0/0:31,0:31:90.26:0,90,1102 0/0:40,0:40:99:0,111,1524 0/0:25,0:25:69.22:0,69,941 0/0:17,0:17:45.15:0,45,634 0/0:22,0:22:63.21:0,63,856 0/0:22,0:22:60.19:0,60,756 0/0:30,0:30:75.24:0,75,981 0/0:23,0:23:63.20:0,63,814 0/0:34,0:34:93.29:0,93,1180 0/0:21,0:21:54.17:0,54,704 0/0:62,0:62:99:0,163,2071 0/0:26,0:26:66.21:0,66,861 0/0:26,0:26:75.24:0,75,945 0/0:24,0:24:69.22:0,69,885 0/0:35,0:35:93.30:0,93,1191 0/0:38,0:38:96.30:0,96,1213 0/0:37,0:37:90.29:0,90,1169 0/0:32,0:33:90.29:0,90,1139 0/0:18,0:18:48.15:0,48,599 0/0:31,0:31:84.26:0,84,1053 0/0:31,0:31:81.26:0,81,1053 1 94341267 . A G 31061.35 . AC=42;AF=0.500;AN=84;BaseQRankSum=25.495;DP=1657;Dels=0.00;FS=1.418;HRun=0;HaplotypeScore=0.3924;InbreedingCoeff=0.1429;MQ=59.32;MQ0=0;MQRankSum=-0.283;QD=23.87;ReadPosRankSum=-0.190 GT:AD:DP:GQ:PL 1/1:0,24:24:66.21:842,66,0 1/1:0,28:28:78.25:1019,78,0 1/1:0,29:29:84.27:1086,84,0 0/1:19,32:51:99:1104,0,490 0/1:20,35:55:99:1254,0,550 1/1:1,64:65:99:2384,147,0 0/1:25,26:51:99:857,0,705 0/1:27,32:59:99:1075,0,742 0/1:14,13:27:99:313,0,378 0/1:6,15:21:99:385,0,132 0/0:23,0:23:66.20:0,66,797 0/0:31,0:31:90.28:0,90,1099 0/0:37,0:37:93.29:0,93,1169 0/0:20,0:20:60.18:0,60,713 0/1:49,61:110:99:1862,0,1272 0/0:18,0:18:51.16:0,51,618 1/1:0,33:33:93.29:1186,93,0 0/0:32,0:32:90.27:0,90,1092 0/1:14,27:41:99:821,0,366 1/1:0,72:72:99:2508,196,0 0/1:25,36:61:99:999,0,667 0/0:32,1:33:59.31:0,59,1078 0/1:30,26:56:99:828,0,877 0/1:18,20:38:99:678,0,562 0/1:32,26:58:99:866,0,928 0/0:47,0:47:99:0,132,1637 0/1:12,10:22:99:282,0,349 0/1:15,24:39:99:772,0,397 1/1:0,26:26:78.25:996,78,0 1/1:0,33:33:96.30:1219,96,0 1/1:0,38:38:99:1391,108,0 1/1:0,54:54:99:1842,141,0 0/1:13,17:30:99:502,0,358 0/1:12,15:27:99:436,0,307 0/0:32,0:32:84.26:0,84,1036 1/1:0,38:38:99:1295,99,0 0/1:26,16:42:99:445,0,738 0/0:30,0:30:81.24:0,81,990 1/1:1,40:41:75.20:1333,75,0 0/0:32,0:32:93.28:0,93,1110 0/0:21,0:21:60.18:0,60,723 0/1:16,16:32:99:483,0,456 1 94466659 . A G 10123.78 . 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C T 131.24 . 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C T 1897 . 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C T 8873.14 . 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G A 51731.61 . 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C A 5045.12 . 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T C 32329.02 . 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G A 2199.03 . 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G A 139364.49 . 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T C 24589.20 . AC=13;AF=0.155;AN=84;BaseQRankSum=16.729;DP=6286;DS;Dels=0.00;FS=7.126;HRun=0;HaplotypeScore=2.1524;InbreedingCoeff=-0.0011;MQ=59.61;MQ0=0;MQRankSum=0.916;QD=16.17;ReadPosRankSum=-3.791 GT:AD:DP:GQ:PL 0/0:107,0:107:99:0,295,3640 0/1:59,62:121:99:1771,0,1777 0/1:63,54:117:99:1630,0,1735 0/0:229,0:229:99:0,635,8068 0/1:112,93:205:99:3116,0,3163 0/0:213,0:213:99:0,599,7780 0/0:220,0:220:99:0,584,7652 0/0:228,0:228:99:0,617,7922 0/1:75,55:130:99:1583,0,2166 0/1:62,64:126:99:1772,0,1880 1/1:1,117:118:99:4151,293,0 0/1:62,55:117:99:1582,0,1805 0/0:118,0:118:99:0,310,3874 0/1:52,60:113:99:1778,0,1519 0/0:250,0:250:99:0,677,8413 0/0:94,0:94:99:0,262,3236 0/0:138,0:138:99:0,382,4744 0/0:115,0:115:99:0,325,3987 0/0:163,0:164:99:0,415,5220 0/0:178,0:178:99:0,454,5733 0/0:184,0:184:99:0,482,6114 0/1:51,54:105:99:1587,0,1419 0/0:211,0:211:99:0,587,7510 0/0:228,0:228:99:0,614,7981 0/0:223,0:223:99:0,587,7599 0/0:235,0:235:99:0,650,8300 0/0:82,0:82:99:0,214,2683 0/0:128,0:128:99:0,364,4467 0/0:129,0:129:99:0,355,4414 0/0:106,1:107:99:0,259,3612 0/1:50,68:118:99:2054,0,1425 0/0:176,0:176:99:0,469,5895 0/0:111,0:111:99:0,298,3688 0/0:133,0:133:99:0,367,4538 0/0:124,0:124:99:0,352,4370 0/0:124,0:124:99:0,343,4253 0/0:147,0:147:99:0,400,4936 0/0:136,1:137:99:0,344,4569 0/0:125,0:126:99:0,346,4290 0/1:65,57:122:99:1688,0,1883 0/0:104,1:105:99:0,252,3485 0/1:69,60:129:99:1878,0,1975 1 103354138 . 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A G 109691.34 . AC=70;AF=0.833;AN=84;BaseQRankSum=23.964;DP=3967;DS;Dels=0.00;FS=8.768;HRun=0;HaplotypeScore=1.5293;InbreedingCoeff=-0.2000;MQ=59.56;MQ0=0;MQRankSum=-0.114;QD=27.65;ReadPosRankSum=-0.125 GT:AD:DP:GQ:PL 1/1:1,83:84:99:2810,198,0 1/1:0,73:73:99:2476,193,0 1/1:0,76:76:99:2562,199,0 1/1:0,203:203:99:7081,518,0 1/1:0,169:169:99:6267,454,0 1/1:0,146:146:99:5222,379,0 0/1:60,68:128:99:2091,0,1696 1/1:0,117:117:99:4211,310,0 0/1:46,33:79:99:976,0,1301 0/1:38,30:68:99:870,0,965 1/1:0,64:64:99:2234,175,0 0/1:28,37:65:99:1104,0,746 1/1:0,40:40:99:1407,111,0 0/1:36,29:65:99:826,0,968 0/1:129,121:250:99:3364,0,3615 1/1:0,68:68:99:2421,190,0 0/1:49,28:77:99:828,0,1407 1/1:0,67:67:99:2315,178,0 1/1:0,104:104:99:3681,286,0 1/1:0,121:121:99:3988,310,0 1/1:0,108:108:99:3660,283,0 1/1:0,64:64:99:2184,172,0 0/1:110,101:211:99:3034,0,3121 1/1:0,102:102:99:3666,271,0 1/1:0,129:129:99:4618,337,0 1/1:1,124:125:99:4287,279,0 0/1:21,19:40:99:536,0,621 1/1:1,69:70:99:2359,150,0 0/1:28,33:61:99:959,0,771 1/1:0,65:66:99:2248,175,0 0/1:31,28:59:99:849,0,876 1/1:0,122:122:99:3964,301,0 1/1:0,63:63:99:2066,157,0 1/1:0,61:61:99:2165,169,0 1/1:0,75:75:99:2532,196,0 0/1:41,37:78:99:1133,0,1130 1/1:0,108:108:99:3674,286,0 1/1:0,72:72:99:2332,181,0 1/1:0,64:64:99:2220,175,0 0/1:42,49:91:99:1381,0,1112 1/1:0,63:63:99:2100,163,0 0/1:38,33:71:99:990,0,1162 1 103364285 . G A 874.54 . 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G A 74.20 . 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G GA 336.47 . 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CATCTACA C 1535.76 . 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A C 18.87 . AC=3;AF=0.036;AN=84;BaseQRankSum=-12.529;DP=3440;Dels=0.03;FS=2038.993;HRun=1;HaplotypeScore=14.4479;InbreedingCoeff=-0.0442;MQ=59.14;MQ0=1;MQRankSum=-0.113;QD=0.11;ReadPosRankSum=-21.611 GT:AD:DP:GQ:PL 0/1:32,14:46:32.76:33,0,926 0/1:39,21:60:37.92:38,0,1175 0/0:35,12:47:73.67:0,74,1154 0/0:107,59:166:99:0,110,3371 0/0:100,58:158:99:0,169,3265 0/0:103,0:103:99:0,304,3719 0/0:75,40:115:99:0,217,2526 0/0:83,57:140:95.66:0,96,2623 0/0:41,13:54:56.05:0,56,1205 0/0:60,20:80:99:0,115,1880 0/0:37,19:56:77.79:0,78,1191 0/0:49,19:68:99:0,104,1519 0/1:41,23:64:22.79:23,0,1242 0/0:39,16:55:79.08:0,79,1270 0/0:122,47:169:99:0,186,3870 0/0:32,12:44:40.04:0,40,1032 0/0:38,6:44:76.91:0,77,1147 0/0:47,21:68:46.47:0,46,1474 0/0:62,23:85:99:0,151,2039 0/0:65,36:101:54.09:0,54,2036 0/0:72,20:92:99:0,204,2394 0/0:37,18:55:20.59:0,21,1141 0/0:107,66:173:99:0,125,3361 0/0:78,45:123:99:0,139,2647 0/0:85,47:132:99:0,154,2775 0/0:64,37:101:99:0,146,2070 0/0:33,17:50:30.93:0,31,1001 0/0:36,13:49:73.74:0,74,1129 0/0:30,13:43:2.73:1,0,912 0/0:39,19:58:40.03:0,40,1197 0/0:46,15:61:52.87:0,53,1547 0/0:73,29:102:99:0,123,2278 0/0:52,13:65:99:0,111,1621 0/0:41,16:57:26.77:0,27,1205 0/0:44,14:58:99:0,125,1446 0/0:45,18:63:70.40:0,70,1348 0/0:72,21:93:99:0,115,2260 0/0:36,18:54:52.05:0,52,1103 0/0:42,0:42:99:0,123,1395 0/0:35,12:47:17.83:0,18,1111 0/0:33,16:49:28.30:0,28,990 0/0:36,19:55:35.81:0,36,1075 1 103468336 . A C 15252.14 . 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T C 1869.32 . AC=4;AF=0.048;AN=84;BaseQRankSum=-1.283;DP=1494;Dels=0.00;FS=2.828;HRun=2;HaplotypeScore=0.8130;InbreedingCoeff=-0.0500;MQ=59.30;MQ0=0;MQRankSum=0.985;QD=13.26;ReadPosRankSum=-0.825 GT:AD:DP:GQ:PL 0/0:28,0:28:78.24:0,78,979 0/0:27,0:27:72.23:0,72,913 0/1:8,13:21:99:365,0,219 0/0:95,0:95:99:0,214,2843 0/0:77,0:77:99:0,187,2458 0/0:54,0:54:99:0,144,1890 0/0:55,0:55:99:0,144,1897 0/1:33,30:63:99:907,0,936 0/0:33,0:33:75.23:0,75,976 0/0:20,0:21:54.17:0,54,676 0/0:18,0:18:54.16:0,54,642 0/0:30,0:30:72.21:0,72,916 0/0:29,0:29:81.25:0,81,1011 0/0:27,0:27:75.24:0,75,940 0/0:96,0:96:99:0,232,2950 0/0:17,0:17:45.14:0,45,566 0/0:18,0:18:45.14:0,45,557 0/0:21,0:21:54.17:0,54,690 0/0:39,0:39:99:0,102,1296 0/0:35,0:35:87.27:0,87,1112 0/0:41,0:41:99:0,99,1279 0/0:20,0:20:51.16:0,51,644 0/0:73,0:73:99:0,181,2358 0/0:39,0:39:99:0,108,1415 0/0:81,0:81:99:0,199,2623 0/0:42,0:42:99:0,99,1319 0/0:13,0:13:33.10:0,33,423 0/0:19,0:19:54.17:0,54,678 0/0:20,0:20:48.15:0,48,624 0/0:27,1:28:54.56:0,55,934 0/0:21,0:21:60.19:0,60,762 0/0:22,0:22:57.18:0,57,736 0/0:17,0:17:45.14:0,45,569 0/0:26,0:26:75.23:0,75,932 0/0:20,0:20:51.16:0,51,656 0/0:36,0:36:90.29:0,90,1167 0/0:32,0:32:75.24:0,75,993 0/0:29,0:29:75.24:0,75,947 0/0:23,0:23:63.20:0,63,795 0/1:16,14:30:99:334,0,487 0/1:13,14:27:99:351,0,394 0/0:31,0:31:84.27:0,84,1073 1 103491461 . T G 7563.48 . 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G T 444.46 . 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G A 521.93 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.452;DP=10065;DS;Dels=0.00;FS=3.600;HRun=1;HaplotypeScore=0.9786;InbreedingCoeff=-0.0120;MQ=14.57;MQ0=7388;MQRankSum=0.424;QD=2.34;ReadPosRankSum=2.152 GT:AD:DP:GQ:PL 0/0:250,0:250:99:0,159,1634 0/0:240,0:240:99:0,132,1347 0/0:227,0:227:99:0,138,1471 0/0:250,0:250:99:0,171,1731 0/0:248,0:248:99:0,219,2247 0/0:241,0:241:99:0,195,1978 0/0:243,0:243:99:0,183,1922 0/0:250,0:250:99:0,201,1984 0/0:224,0:224:99:0,150,1563 0/0:247,0:247:99:0,117,1243 0/0:229,0:230:99:0,144,1481 0/0:226,0:226:99:0,153,1603 0/0:233,0:233:99:0,132,1435 0/0:238,0:238:99:0,174,1899 0/0:250,0:250:99:0,168,1593 0/0:197,0:197:99:0,171,1792 0/0:247,0:247:99:0,147,1601 0/0:195,0:195:99:0,174,1852 0/0:250,0:250:99:0,222,2319 0/0:248,0:248:99:0,213,2216 0/0:246,0:247:99:0,180,1866 0/0:246,1:247:99:0,207,2233 0/0:247,1:248:99:0,168,1717 0/0:250,0:250:99:0,195,1969 0/0:250,0:250:99:0,246,2438 0/0:242,0:243:99:0,174,1770 0/0:213,0:213:99:0,102,1079 0/0:246,0:246:99:0,126,1389 0/1:166,57:223:99:568,0,666 0/0:249,0:250:99:0,129,1408 0/0:243,0:243:99:0,183,1940 0/0:250,0:250:99:0,168,1724 0/0:223,0:223:99:0,177,1885 0/0:241,0:241:99:0,153,1631 0/0:228,0:228:99:0,150,1743 0/0:245,0:245:99:0,171,1815 0/0:249,0:249:99:0,180,1841 0/0:250,0:250:99:0,144,1548 0/0:237,0:237:99:0,156,1644 0/0:250,0:250:99:0,183,1966 0/0:248,0:248:99:0,180,1948 0/0:249,0:249:99:0,192,2084 1 104115694 . T C 6309.98 . AC=2;AF=0.024;AN=84;BaseQRankSum=17.306;DP=10434;DS;Dels=0.00;FS=3.609;HRun=0;HaplotypeScore=2.8310;InbreedingCoeff=-0.0244;MQ=44.74;MQ0=89;MQRankSum=-2.190;QD=12.62;ReadPosRankSum=1.944 GT:AD:DP:GQ:PL 0/1:122,128:250:99:3483,0,2835 0/1:138,112:250:99:2827,0,3401 0/0:250,0:250:99:0,673,7812 0/0:249,1:250:99:0,715,8096 0/0:250,0:250:99:0,709,8177 0/0:250,0:250:99:0,698,8375 0/0:250,0:250:99:0,688,8098 0/0:250,0:250:99:0,712,8021 0/0:250,0:250:99:0,670,7711 0/0:250,0:250:99:0,688,7678 0/0:250,0:250:99:0,640,7256 0/0:249,1:250:99:0,645,7678 0/0:231,0:231:99:0,601,6837 0/0:250,0:250:99:0,670,7769 0/0:250,0:250:99:0,664,7177 0/0:218,0:218:99:0,592,6755 0/0:249,0:249:99:0,667,7682 0/0:249,0:250:99:0,673,7654 0/0:250,0:250:99:0,656,7655 0/0:250,0:250:99:0,679,7962 0/0:250,0:250:99:0,649,7535 0/0:250,0:250:99:0,661,7610 0/0:250,0:250:99:0,712,8240 0/0:250,0:250:99:0,700,8151 0/0:250,0:250:99:0,709,8285 0/0:250,0:250:99:0,682,7976 0/0:242,0:242:99:0,637,7381 0/0:250,0:250:99:0,691,7956 0/0:250,0:250:99:0,664,7634 0/0:242,0:243:99:0,649,7316 0/0:250,0:250:99:0,682,7839 0/0:249,0:250:99:0,682,7890 0/0:250,0:250:99:0,691,7943 0/0:250,0:250:99:0,694,7931 0/0:250,0:250:99:0,664,7638 0/0:250,0:250:99:0,661,7615 0/0:250,0:250:99:0,674,7825 0/0:250,0:250:99:0,676,7643 0/0:250,0:250:99:0,700,7989 0/0:250,0:250:99:0,703,7749 0/0:250,0:250:99:0,694,7750 0/0:250,0:250:99:0,709,7999 1 104115783 . T G 1544.43 . AC=1;AF=0.012;AN=84;BaseQRankSum=11.390;DP=10439;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.4251;InbreedingCoeff=-0.0120;MQ=26.13;MQ0=1768;MQRankSum=-2.467;QD=6.18;ReadPosRankSum=0.759 GT:AD:DP:GQ:PL 0/0:247,1:248:99:0,381,3931 0/0:249,1:250:99:0,409,4352 0/0:242,0:243:99:0,433,4491 0/0:250,0:250:99:0,469,4978 0/0:248,2:250:99:0,520,5490 0/0:249,0:250:99:0,538,5891 0/0:250,0:250:99:0,439,4625 0/0:250,0:250:99:0,502,5374 0/0:249,0:250:99:0,454,4779 0/0:236,0:237:99:0,409,4254 0/0:242,1:243:99:0,457,4822 0/0:248,0:249:99:0,448,4690 0/0:236,0:237:99:0,385,4067 0/0:248,1:249:99:0,481,5155 0/0:247,1:250:99:0,339,3511 0/0:249,0:250:99:0,457,4856 0/0:250,0:250:99:0,433,4527 0/0:249,0:250:99:0,463,4879 0/0:246,2:250:99:0,364,3867 0/0:247,1:250:99:0,397,4257 0/0:247,1:250:99:0,427,4565 0/0:249,0:250:99:0,463,4877 0/0:249,0:250:99:0,484,5193 0/0:250,0:250:99:0,508,5453 0/0:249,0:250:99:0,538,5755 0/0:250,0:250:99:0,514,5444 0/0:250,0:250:99:0,442,4706 0/0:246,1:250:99:0,475,5031 0/1:152,98:250:99:1591,0,1576 0/0:248,0:250:99:0,475,5034 0/0:246,0:246:99:0,448,4704 0/0:249,1:250:99:0,496,5368 0/0:247,1:249:99:0,481,5115 0/0:250,0:250:99:0,484,5107 0/0:250,0:250:99:0,400,4230 0/0:250,0:250:99:0,408,4231 0/0:246,1:250:99:0,496,5389 0/0:242,2:245:99:0,490,5087 0/0:247,1:248:99:0,526,5530 0/0:249,0:250:99:0,478,5108 0/0:246,1:247:99:0,499,5211 0/0:248,0:248:99:0,472,5084 1 104116413 . T C 57989.95 . AC=18;AF=0.214;AN=84;BaseQRankSum=33.774;DP=10338;DS;Dels=0.00;FS=150.411;HRun=1;HaplotypeScore=2.7849;InbreedingCoeff=0.0101;MQ=50.42;MQ0=127;MQRankSum=-23.257;QD=14.82;ReadPosRankSum=2.861 GT:AD:DP:GQ:PL 1/1:1,234:236:99:7092,574,0 0/1:107,119:227:99:3008,0,2964 0/0:241,0:241:99:0,659,7825 0/0:250,0:250:99:0,716,8554 0/0:249,1:250:99:0,686,8784 0/1:134,116:250:99:3194,0,3880 0/1:116,134:250:99:3985,0,3434 0/0:250,0:250:99:0,728,8792 0/0:235,0:235:99:0,650,7647 0/0:244,0:244:99:0,674,7821 0/0:250,0:250:99:0,704,8252 0/0:240,0:240:99:0,665,7817 0/1:129,115:244:99:2628,0,3536 0/0:250,0:250:99:0,692,8230 0/1:134,114:250:99:2849,0,3647 0/1:124,107:232:99:2477,0,3467 0/0:249,0:250:99:0,701,8300 0/0:250,0:250:99:0,707,8306 0/1:132,117:250:99:2818,0,3903 0/1:140,109:250:99:2747,0,4040 0/1:124,125:250:99:3392,0,3392 1/1:1,240:243:99:7388,604,0 0/0:249,0:250:99:0,719,8703 0/0:250,0:250:99:0,722,8717 0/0:249,0:250:99:0,716,8716 0/0:250,0:250:99:0,686,8357 0/0:236,0:236:99:0,653,7694 0/1:106,144:250:99:3533,0,2957 0/0:245,0:245:99:0,692,8131 0/0:239,0:239:99:0,662,7770 0/1:108,124:232:99:3092,0,2949 0/0:248,2:250:99:0,695,8491 0/0:249,0:249:99:0,668,7936 0/0:250,0:250:99:0,728,8560 0/1:113,137:250:99:3324,0,3096 0/0:250,0:250:99:0,716,8509 0/1:129,120:250:99:3126,0,3707 0/0:245,0:245:99:0,701,8182 0/1:119,131:250:99:3335,0,3335 0/0:249,0:250:99:0,707,8223 0/0:250,0:250:99:0,725,8525 0/0:250,0:250:99:0,710,8392 1 104116920 . C T 5337.33 . AC=2;AF=0.024;AN=84;BaseQRankSum=-11.717;DP=8818;DS;Dels=0.00;FS=1.200;HRun=1;HaplotypeScore=2.5457;InbreedingCoeff=-0.0244;MQ=48.85;MQ0=12;MQRankSum=2.265;QD=10.80;ReadPosRankSum=0.434 GT:AD:DP:GQ:PL 0/0:167,0:167:99:0,427,5253 0/0:168,0:168:99:0,436,5428 0/0:199,0:199:99:0,515,6474 0/0:247,0:247:99:0,635,8455 0/0:246,0:247:99:0,656,8734 0/0:249,0:249:99:0,692,9157 0/0:216,0:216:99:0,563,7540 0/0:250,0:250:99:0,671,8856 0/0:175,0:175:99:0,463,5813 0/0:172,0:172:99:0,433,5354 0/0:173,0:174:99:0,427,5345 0/0:229,0:230:99:0,590,7401 0/0:175,0:175:99:0,418,5282 0/0:170,0:170:99:0,436,5360 0/0:249,0:250:99:0,674,8267 0/0:176,0:176:99:0,466,5750 0/0:196,0:196:99:0,490,6076 0/0:195,0:196:99:0,515,6437 0/0:247,0:250:99:0,656,8045 0/0:250,0:250:99:0,635,8022 0/1:137,111:250:99:2879,0,3580 0/0:183,0:183:99:0,466,5901 0/0:250,0:250:99:0,680,9125 0/0:227,0:227:99:0,629,8279 0/0:218,0:218:99:0,578,7644 0/0:250,0:250:99:0,635,8520 0/0:137,0:137:99:0,370,4599 0/0:208,0:208:99:0,542,6655 0/0:176,0:176:99:0,457,5658 0/0:209,0:209:99:0,524,6559 0/0:182,1:183:99:0,475,5950 0/1:145,99:244:99:2458,0,4134 0/0:171,0:171:99:0,445,5531 0/0:188,0:188:99:0,469,5771 0/0:182,0:182:99:0,448,5568 0/0:186,0:186:99:0,469,5842 0/0:239,0:239:99:0,596,7468 0/0:212,0:212:99:0,512,6359 0/0:204,0:204:99:0,539,6709 0/0:247,0:247:99:0,650,8059 0/0:249,1:250:99:0,641,8220 0/0:247,0:247:99:0,668,8316 1 104120227 . T C 5661.30 . AC=4;AF=0.048;AN=84;BaseQRankSum=18.612;DP=10249;DS;Dels=0.00;FS=0.281;HRun=0;HaplotypeScore=2.2646;InbreedingCoeff=-0.0500;MQ=22.45;MQ0=3913;MQRankSum=0.359;QD=5.98;ReadPosRankSum=-1.627 GT:AD:DP:GQ:PL 0/0:243,1:244:99:0,303,3016 0/1:168,76:244:99:1107,0,1476 0/1:127,88:215:99:1410,0,1209 0/0:250,0:250:99:0,315,3104 0/0:250,0:250:99:0,363,3544 0/0:250,0:250:99:0,348,3365 0/0:250,0:250:99:0,264,2653 0/0:250,0:250:99:0,396,3939 0/0:240,0:240:99:0,333,3281 0/0:213,0:214:99:0,297,2961 0/0:228,0:228:99:0,288,2855 0/0:242,0:242:99:0,354,3478 0/0:230,0:230:99:0,330,3218 0/0:249,0:249:99:0,375,3744 0/0:250,0:250:99:0,444,4359 0/0:233,0:233:99:0,300,2980 0/0:242,0:242:99:0,426,4304 0/0:248,0:248:99:0,381,3742 0/0:250,0:250:99:0,303,2860 0/0:250,0:250:99:0,300,3024 0/0:250,0:250:99:0,327,3306 0/0:242,0:242:99:0,276,2681 0/0:250,0:250:99:0,396,3801 0/0:250,0:250:99:0,393,4012 0/0:250,0:250:99:0,357,3605 0/0:250,0:250:99:0,369,3635 0/0:236,0:236:99:0,291,2893 0/0:250,0:250:99:0,303,2955 0/0:248,0:248:99:0,357,3400 0/1:159,90:249:99:1471,0,1363 0/0:243,1:244:99:0,282,2850 0/0:250,0:250:99:0,390,3964 0/1:141,96:239:99:1673,0,1435 0/0:250,0:250:99:0,396,3991 0/0:248,0:248:99:0,252,2476 0/0:243,0:243:99:0,363,3650 0/0:246,0:246:99:0,360,3571 0/0:248,0:248:99:0,363,3578 0/0:233,0:233:99:0,363,3783 0/0:250,0:250:99:0,345,3398 0/0:244,0:244:99:0,381,3798 0/0:250,0:250:99:0,367,3831 1 104163262 . C G 64.40 . 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G A 461.21 . AC=9;AF=0.107;AN=84;BaseQRankSum=-11.450;DP=9913;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.5953;InbreedingCoeff=-0.1255;MQ=8.46;MQ0=7493;MQRankSum=-5.814;QD=0.22;ReadPosRankSum=1.043 GT:AD:DP:GQ:PL 0/0:246,0:246:69.02:0,69,614 0/0:249,0:249:60.02:0,60,534 0/0:206,39:245:30.34:0,30,453 0/0:247,0:247:24.01:0,24,213 0/0:249,0:249:54.02:0,54,480 0/0:249,0:250:54.02:0,54,480 0/0:249,0:250:57.01:0,57,505 0/0:235,0:235:60.02:0,60,534 0/0:250,0:250:36.01:0,36,320 0/0:245,0:245:39.01:0,39,347 0/0:237,1:238:45.01:0,45,399 0/1:186,52:238:55.69:56,0,296 0/0:221,0:221:24.01:0,24,213 0/1:208,42:250:47.02:47,0,180 0/0:250,0:250:60.02:0,60,534 0/0:248,0:248:60.02:0,60,534 0/0:195,1:196:15:0,15,133 0/0:238,1:239:3:0,3,27 0/0:250,0:250:54.03:0,54,492 0/0:249,0:250:54.03:0,54,489 0/0:249,0:250:36.01:0,36,324 0/0:245,0:245:51.02:0,51,453 0/1:203,43:246:55.69:56,0,296 0/1:196,51:247:99:100,0,127 0/1:178,69:247:99:133,0,239 0/0:249,0:249:39.01:0,39,347 0/0:149,0:149:27.01:0,27,240 0/0:250,0:250:60.02:0,60,534 0/0:248,0:248:39.01:0,39,347 0/0:246,0:246:45.01:0,45,400 0/0:245,0:245:78.03:0,78,694 0/0:249,0:250:27.01:0,27,240 0/0:248,1:249:54.01:0,54,477 0/0:213,0:213:21.01:0,21,187 0/0:250,0:250:57.02:0,57,507 0/0:185,0:185:6:0,6,53 0/1:203,47:250:11:11,0,471 0/1:114,33:147:53.02:133,0,53 0/0:182,0:182:39.01:0,39,347 0/0:250,0:250:60.03:0,60,540 0/1:181,40:221:8.34:8,0,302 0/1:220,28:248:41.02:41,0,226 1 104297224 . C G 498.32 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.812;DP=10243;DS;Dels=0.00;FS=0.549;HRun=0;HaplotypeScore=1.8605;InbreedingCoeff=-0.0145;MQ=29.04;MQ0=4193;MQRankSum=3.216;QD=1.99;ReadPosRankSum=-3.000 GT:AD:DP:GQ:PL 0/0:227,23:250:36.13:0,36,5590 0/0:250,0:250:99:0,442,5355 0/0:250,0:250:99:0,430,5248 0/0:250,0:250:99:0,280,3563 0/0:250,0:250:99:0,442,5514 0/0:250,0:250:99:0,548,6987 0/0:249,1:250:99:0,538,7099 0/0:249,0:250:99:0,493,6301 0/0:247,0:247:99:0,289,3602 0/0:249,0:250:99:0,274,3338 0/0:167,0:167:6.02:0,6,71 0/0:250,0:250:99:0,367,4489 0/0:250,0:250:99:0,370,4465 0/0:246,0:246:99:0,325,3981 0/0:246,0:250:99:0,611,7312 0/0:249,0:250:99:0,466,5648 0/0:214,0:214:99:0,289,3556 0/0:250,0:250:99:0,328,3975 0/0:249,0:250:99:0,542,6428 0/0:250,0:250:99:0,572,6967 0/0:246,0:250:99:0,505,6060 0/0:250,0:250:99:0,605,7386 0/0:250,0:250:99:0,551,7129 0/0:250,0:250:99:0,451,5846 0/0:250,0:250:99:0,509,6505 0/0:228,0:228:99:0,181,2216 0/0:248,0:248:99:0,274,3389 0/0:250,0:250:99:0,527,6468 0/0:250,0:250:99:0,238,2842 0/0:249,0:249:99:0,355,4332 0/0:250,0:250:99:0,442,5436 0/0:250,0:250:99:0,316,3935 0/0:250,0:250:99:0,391,4825 0/0:220,0:221:99:0,292,3619 0/1:210,40:250:99:545,0,5050 0/0:234,0:235:99:0,292,3573 0/0:249,0:250:99:0,520,6262 0/0:249,0:250:99:0,430,5309 0/0:187,0:187:99:0,123,1531 0/0:250,0:250:99:0,521,6367 0/0:250,0:250:99:0,379,4611 0/0:250,0:250:99:0,539,6536 1 108291685 . G A 1541.62 . AC=30;AF=0.357;AN=84;BaseQRankSum=-14.921;DP=1416;Dels=0.00;FS=543.012;HRun=2;HaplotypeScore=0.6167;InbreedingCoeff=-0.5686;MQ=58.38;MQ0=0;MQRankSum=-0.118;QD=1.50;ReadPosRankSum=-12.317 GT:AD:DP:GQ:PL 0/1:21,12:33:9.05:9,0,452 0/1:17,8:25:99:105,0,274 0/1:13,11:24:62.27:62,0,374 0/0:18,9:27:6.24:0,6,359 0/0:17,15:32:5.34:0,5,322 0/1:22,8:30:22.97:23,0,400 0/1:14,10:24:8.28:8,0,400 0/1:26,19:45:73.82:74,0,608 0/1:22,12:34:70.74:71,0,337 0/0:20,9:29:15.40:0,15,417 0/1:24,21:45:12.48:12,0,690 0/1:21,15:36:26.55:27,0,360 0/0:27,5:32:13.77:0,14,666 0/0:19,9:28:1.18:0,1,424 0/1:59,40:99:99:163,0,1250 0/0:16,10:26:9.39:0,9,399 0/1:9,6:15:38.17:38,0,110 0/0:20,5:25:45.11:0,45,540 0/1:29,28:57:99:210,0,701 0/0:37,15:52:10.06:0,10,865 0/1:27,18:45:64.48:64,0,539 0/1:20,7:27:18.15:18,0,274 0/1:15,6:21:43.61:44,0,393 0/1:13,9:22:19.30:19,0,264 0/0:19,8:27:25.44:0,25,545 0/1:18,14:32:15.31:15,0,351 0/1:12,8:20:42.64:43,0,396 0/1:23,15:38:6.33:6,0,454 0/0:16,11:27:12.47:0,12,349 0/1:15,12:27:48.88:49,0,278 0/0:15,12:27:7.95:0,8,291 0/0:48,9:57:44.90:0,45,1051 0/1:19,13:32:3.87:4,0,479 0/1:10,11:21:29.19:29,0,210 0/1:21,16:37:35.84:36,0,425 0/1:29,11:40:16.63:17,0,617 0/1:23,16:40:58.86:59,0,552 0/1:10,10:20:83.17:83,0,214 0/1:21,13:34:99:131,0,430 0/1:27,12:39:85.34:85,0,566 0/1:20,13:33:99:133,0,371 0/1:20,12:32:74.03:74,0,347 1 108681808 . T C 3233.06 . AC=31;AF=0.369;AN=84;BaseQRankSum=-17.185;DP=3711;DS;Dels=0.00;FS=2661.622;HRun=2;HaplotypeScore=5.6869;InbreedingCoeff=-0.5747;MQ=59.07;MQ0=0;MQRankSum=8.460;QD=1.13;ReadPosRankSum=-26.319 GT:AD:DP:GQ:PL 0/0:54,25:79:99:0,113,1644 0/1:52,32:84:40.63:41,0,1625 0/0:50,25:75:97.62:0,98,1672 0/1:55,52:107:99:174,0,1627 0/1:51,57:108:7.44:7,0,1541 0/0:51,30:81:21.02:0,21,1611 0/0:39,23:62:6.92:0,7,1164 0/0:52,47:100:59.29:0,59,1573 0/0:47,40:87:8.97:0,9,1324 0/0:44,33:77:60.62:0,61,1342 0/0:51,16:68:70.99:0,71,1585 0/1:52,36:88:99:113,0,1510 0/0:44,6:53:99:0,123,1457 0/1:44,37:81:84.81:85,0,1246 0/1:131,108:239:99:244,0,3587 0/1:32,37:69:99:134,0,849 0/1:48,47:96:99:177,0,1356 0/1:50,44:94:99:173,0,1433 0/1:68,43:111:79.13:79,0,2024 0/0:58,51:110:61.01:0,61,1726 0/1:70,39:109:87.96:88,0,1926 0/1:33,33:66:30.18:30,0,895 0/1:54,56:110:99:118,0,1599 0/1:40,26:66:20.88:21,0,1183 0/1:44,44:88:41.57:42,0,1324 0/0:43,22:65:81.76:0,82,1380 0/1:35,33:68:7.56:8,0,1080 0/1:50,34:84:99:321,0,1426 0/1:46,26:72:21.04:21,0,1374 0/1:42,37:79:99:166,0,1142 0/1:36,39:75:93:93,0,1072 0/1:62,58:120:8.52:9,0,1777 0/1:54,37:91:8.11:8,0,1519 0/1:39,41:80:99:374,0,1133 0/1:35,34:69:63.68:64,0,1008 0/1:56,44:100:99:121,0,1653 0/1:57,47:104:99:293,0,1620 0/1:56,39:95:99:151,0,1624 0/1:41,33:74:87.14:87,0,1207 0/1:46,38:84:99:110,0,1324 0/1:37,20:57:12.39:12,0,1042 0/1:44,31:75:44.05:44,0,1382 1 108681808 . T TC 5496.29 . 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A T 1407.65 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.675;DP=2600;Dels=0.00;FS=3.632;HRun=0;HaplotypeScore=0.8385;InbreedingCoeff=-0.0244;MQ=59.40;MQ0=0;MQRankSum=-1.411;QD=13.03;ReadPosRankSum=-1.732 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,153,1884 0/0:51,0:51:99:0,150,1833 0/0:52,0:52:99:0,147,1780 0/0:75,0:75:99:0,208,2579 0/0:77,0:77:99:0,220,2771 0/0:70,0:71:99:0,190,2444 0/0:56,0:56:99:0,163,2088 0/0:60,0:60:99:0,163,2036 0/0:47,0:47:99:0,129,1583 0/0:61,0:61:99:0,175,2100 0/0:58,0:58:99:0,165,2008 0/0:59,0:59:99:0,172,2071 0/0:53,0:53:99:0,135,1695 0/0:35,0:35:99:0,102,1252 0/0:195,0:195:99:0,533,6531 0/0:49,0:49:99:0,135,1622 0/0:65,0:65:99:0,190,2283 0/0:46,0:46:99:0,123,1541 0/0:72,0:72:99:0,196,2436 0/0:74,0:74:99:0,211,2601 0/0:69,0:69:99:0,190,2366 0/0:54,0:54:99:0,159,1928 0/0:58,0:58:99:0,166,2066 0/0:43,0:43:99:0,123,1535 0/0:66,0:66:99:0,184,2329 0/0:46,0:46:99:0,132,1632 0/1:22,24:46:99:683,0,586 0/1:33,29:62:99:787,0,986 0/0:48,0:48:99:0,141,1717 0/0:71,0:71:99:0,193,2392 0/0:53,0:53:99:0,147,1792 0/0:88,0:88:99:0,238,2991 0/0:48,0:48:99:0,138,1696 0/0:32,0:32:96.29:0,96,1172 0/0:48,0:48:99:0,129,1625 0/0:79,0:79:99:0,211,2635 0/0:89,0:89:99:0,247,3029 0/0:57,0:57:99:0,156,1898 0/0:60,0:60:99:0,178,2156 0/0:56,0:56:99:0,163,2006 0/0:50,0:51:99:0,144,1761 0/0:64,1:65:99:0,184,2269 1 109200108 . C T 673.17 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.428;DP=3579;DS;Dels=0.00;FS=4.984;HRun=0;HaplotypeScore=0.9400;InbreedingCoeff=-0.0120;MQ=59.71;MQ0=0;MQRankSum=0.608;QD=12.47;ReadPosRankSum=-0.088 GT:AD:DP:GQ:PL 0/0:70,0:70:99:0,199,2308 0/0:79,0:79:99:0,214,2452 0/0:53,0:53:99:0,147,1743 0/0:151,0:151:99:0,391,5028 0/0:138,0:138:99:0,361,4644 0/0:124,0:125:99:0,337,4248 0/0:108,0:108:99:0,289,3708 0/0:116,0:116:99:0,316,4021 0/0:66,0:66:99:0,181,2123 0/0:53,0:53:99:0,147,1733 0/0:62,0:62:99:0,168,1996 0/0:79,0:79:99:0,214,2495 0/0:69,0:69:99:0,187,2198 0/0:74,0:74:99:0,214,2492 0/0:239,0:239:99:0,605,7318 0/0:53,0:53:99:0,144,1705 0/0:55,0:55:99:0,153,1821 0/0:56,0:56:99:0,150,1781 0/0:111,0:111:99:0,283,3393 0/0:83,0:83:99:0,214,2607 0/0:94,0:94:99:0,238,2861 0/0:52,0:52:99:0,141,1658 0/0:159,0:159:99:0,415,5332 0/0:129,0:129:99:0,316,4078 0/0:122,0:122:99:0,310,4000 0/0:118,0:118:99:0,301,3833 0/0:43,0:43:99:0,114,1343 0/0:67,0:67:99:0,189,2186 0/0:53,0:53:99:0,144,1708 0/0:77,0:77:99:0,208,2470 0/1:29,25:54:99:719,0,805 0/0:98,0:98:99:0,259,3108 0/0:59,0:59:99:0,159,1898 0/0:57,0:57:99:0,147,1772 0/0:64,0:64:99:0,184,2129 0/0:82,0:82:99:0,232,2704 0/0:72,0:72:99:0,193,2252 0/0:68,0:68:99:0,184,2167 0/0:59,0:59:99:0,162,1957 0/0:70,0:70:99:0,184,2194 0/0:78,0:78:99:0,208,2483 0/0:64,0:64:99:0,181,2103 1 109200189 . C T 1741.97 . 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G A 1190.77 . 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G A 1471.23 . 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A AC 4159.71 . 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C T 62222.11 . 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C T 4952.75 . 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G A 4827.75 . 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G A 3374.78 . 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A G 9033.29 . 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AC=4;AF=0.048;AN=84;BaseQRankSum=20.269;DP=7474;DS;Dels=0.00;FS=161.124;HRun=2;HaplotypeScore=3.6364;InbreedingCoeff=-0.0500;MQ=58.61;MQ0=10;MQRankSum=-16.516;QD=7.14;ReadPosRankSum=2.657 GT:AD:DP:GQ:PL 0/0:163,0:163:99:0,430,5267 0/0:167,0:167:99:0,460,5575 0/0:156,0:156:99:0,424,5172 0/1:119,74:193:99:1141,0,3275 0/1:107,90:197:99:1820,0,3143 0/0:215,1:216:99:0,520,7045 0/0:228,0:228:99:0,614,7630 0/0:221,0:221:99:0,596,7402 0/0:171,0:171:99:0,445,5467 0/0:150,0:150:99:0,406,4915 0/0:125,0:125:99:0,352,4217 0/0:143,1:144:99:0,362,4732 0/0:142,0:142:99:0,400,4768 0/0:150,1:151:99:0,412,5150 0/0:250,0:250:99:0,677,8200 0/0:135,0:135:99:0,391,4640 0/0:175,0:175:99:0,484,5887 0/0:148,0:148:99:0,409,4999 0/0:231,0:231:99:0,611,7544 0/0:241,1:243:99:0,647,7945 0/0:233,0:234:99:0,644,7864 0/0:156,0:156:99:0,436,5240 0/0:218,0:218:99:0,614,7454 0/0:180,0:180:99:0,475,5844 0/0:226,0:226:99:0,602,7463 0/0:202,0:202:99:0,530,6497 0/0:131,0:132:99:0,364,4395 0/0:157,0:157:99:0,439,5313 0/1:79,51:130:99:825,0,2266 0/0:171,0:171:99:0,481,5839 0/1:76,54:130:99:853,0,2295 0/0:222,0:222:99:0,593,7329 0/0:176,0:176:99:0,469,5686 0/0:168,0:168:99:0,481,5780 0/0:172,1:173:99:0,487,5893 0/0:202,0:202:99:0,560,6792 0/0:226,0:226:99:0,593,7284 0/0:157,0:157:99:0,430,5251 0/0:154,0:154:99:0,430,5184 0/0:163,0:163:99:0,463,5636 0/0:128,0:128:99:0,352,4223 0/0:163,0:163:99:0,466,5636 1 110257835 . C T 3824.31 . 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T C 4137.06 . 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C T 2799.68 . 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C T 18862.23 . 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G T 29.85 . 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G A 14583.80 . 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GTGA G 653.08 . 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T G 1185.95 . 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A G 81.40 . 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T C 12356.06 . AC=37;AF=0.440;AN=84;BaseQRankSum=11.130;DP=862;Dels=0.00;FS=0.820;HRun=0;HaplotypeScore=1.7484;InbreedingCoeff=0.1037;MQ=58.23;MQ0=0;MQRankSum=0.170;QD=22.03;ReadPosRankSum=1.519 GT:AD:DP:GQ:PL 0/1:10,5:15:99:136,0,308 0/0:13,0:13:39.11:0,39,452 0/0:14,0:14:39.11:0,39,459 0/0:33,0:33:96.29:0,96,1146 0/1:9,15:24:99:487,0,218 0/1:8,12:20:99:378,0,229 1/1:0,15:15:45.15:597,45,0 0/0:16,0:16:45.12:0,45,528 1/1:0,14:14:39.12:483,39,0 1/1:0,13:13:39.12:474,39,0 1/1:0,18:18:51.16:645,51,0 0/0:17,0:17:48.14:0,48,561 0/1:11,5:16:87.53:88,0,338 0/0:27,0:27:81.23:0,81,935 0/0:54,1:55:99:0,147,1695 0/0:19,0:19:57.14:0,57,643 0/0:15,0:15:42.13:0,42,495 0/0:20,0:20:60.18:0,60,701 0/1:13,17:30:99:446,0,335 1/1:0,31:31:84.25:1032,84,0 0/1:12,23:35:99:691,0,325 0/0:23,0:23:66.20:0,66,781 0/1:16,10:26:99:323,0,500 0/0:16,0:16:48.14:0,48,578 0/0:17,0:17:48.15:0,48,579 0/1:6,8:14:99:280,0,165 0/1:6,5:11:99:155,0,184 0/1:14,6:20:99:151,0,434 0/1:5,17:22:99:543,0,111 0/1:10,11:21:99:336,0,282 0/1:7,8:15:99:214,0,199 1/1:0,25:25:72.20:857,72,0 0/1:12,11:23:99:330,0,352 0/1:12,16:28:99:521,0,346 0/0:16,0:16:45.13:0,45,531 0/1:12,8:20:99:238,0,339 0/1:8,12:20:99:315,0,191 1/1:0,17:17:45.14:564,45,0 0/1:4,12:16:98.71:386,0,99 1/1:0,20:20:60.19:742,60,0 0/1:1,12:13:1.69:358,0,2 1/1:0,17:17:48.14:586,48,0 1 110709720 . G A 9872.77 . 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G A 1934.82 . 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C T 749.35 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.147;DP=1883;Dels=0.00;FS=12.620;HRun=0;HaplotypeScore=1.2183;InbreedingCoeff=-0.0244;MQ=59.25;MQ0=0;MQRankSum=0.115;QD=12.09;ReadPosRankSum=0.042 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,114,1431 0/0:38,0:38:99:0,105,1315 0/0:34,0:34:96.30:0,96,1212 0/0:85,0:85:99:0,220,2916 0/0:77,0:78:99:0,202,2692 0/0:64,0:64:99:0,144,1927 0/0:56,0:56:99:0,144,1938 0/0:50,0:50:99:0,141,1813 0/0:44,0:44:99:0,126,1598 0/0:38,0:38:99:0,102,1261 0/0:25,0:25:63.19:0,63,810 0/0:43,0:43:99:0,117,1457 0/0:34,0:34:90.29:0,90,1161 0/0:32,0:32:90.25:0,90,1086 0/0:154,0:154:99:0,391,4927 0/0:29,0:29:72.22:0,72,890 0/0:39,0:39:99:0,111,1378 0/0:29,0:29:75.23:0,75,951 0/0:52,0:52:99:0,144,1714 0/0:51,0:51:99:0,138,1747 0/0:37,0:37:96.26:0,96,1149 0/0:33,0:33:87.27:0,87,1110 0/0:95,0:95:99:0,250,3334 0/0:46,0:46:99:0,117,1576 0/0:67,0:67:99:0,166,2205 0/0:53,0:53:99:0,126,1695 0/0:28,0:28:75.24:0,75,943 0/0:31,0:31:87.27:0,87,1100 0/0:30,0:30:81.26:0,81,1025 0/0:34,0:34:99:0,99,1267 0/0:32,0:32:93.28:0,93,1159 0/0:39,0:39:99:0,111,1416 0/0:40,0:40:99:0,114,1415 0/1:19,21:40:99:575,0,488 0/1:14,8:22:99:237,0,390 0/0:38,0:38:99:0,102,1281 0/0:49,0:49:99:0,120,1487 0/0:34,0:34:96.29:0,96,1191 0/0:23,0:23:60.18:0,60,752 0/0:39,0:39:99:0,99,1247 0/0:32,0:32:87.27:0,87,1092 0/0:26,0:26:69.20:0,69,863 1 110738296 . G A 21753.49 . AC=42;AF=0.500;AN=84;BaseQRankSum=12.974;DP=1712;Dels=0.00;FS=71.845;HRun=0;HaplotypeScore=4.1988;InbreedingCoeff=-0.1429;MQ=58.26;MQ0=0;MQRankSum=0.783;QD=16.94;ReadPosRankSum=1.144 GT:AD:DP:GQ:PL 1/1:1,36:37:99:1279,105,0 0/1:20,26:46:99:720,0,446 0/0:28,0:29:75.18:0,75,814 0/0:72,0:72:99:0,189,2232 0/0:80,1:81:99:0,186,2554 1/1:0,55:55:99:1765,141,0 1/1:1,42:43:73.08:1276,73,0 0/1:28,25:53:99:677,0,724 0/1:20,18:38:99:463,0,474 0/1:14,12:26:99:262,0,358 0/0:26,0:26:69.16:0,69,752 0/1:22,18:41:99:435,0,503 0/1:13,16:30:99:493,0,299 0/1:19,14:33:99:368,0,421 0/1:57,52:110:99:1369,0,1237 0/1:16,15:31:99:427,0,344 0/0:34,0:35:99:0,99,1105 0/1:14,7:21:99:202,0,276 0/0:49,0:49:99:0,117,1357 0/1:34,22:56:99:539,0,911 0/0:44,0:44:99:0,105,1208 0/0:36,0:36:96.20:0,96,1046 0/1:31,33:64:99:824,0,805 0/1:25,22:47:99:601,0,711 0/0:56,0:56:99:0,153,1853 1/1:2,43:45:78.79:1260,79,0 0/1:12,12:24:99:275,0,290 0/1:15,19:34:99:516,0,395 1/1:0,16:16:45.11:527,45,0 0/1:22,14:36:99:392,0,513 0/1:10,16:26:99:405,0,216 0/1:19,22:41:99:513,0,549 0/1:18,15:33:99:418,0,459 1/1:1,21:23:60.18:724,60,0 0/1:15,15:31:99:351,0,383 0/1:8,18:27:99:538,0,163 0/1:37,20:58:99:467,0,902 1/1:1,28:29:75.23:901,75,0 0/1:16,14:30:99:361,0,279 1/1:1,31:32:53.83:973,54,0 0/1:19,18:37:99:455,0,385 1/1:1,30:31:56.59:977,57,0 1 110738300 . A C 1573.68 . AC=28;AF=0.333;AN=84;BaseQRankSum=-25.939;DP=2213;Dels=0.00;FS=1215.428;HRun=3;HaplotypeScore=11.0784;InbreedingCoeff=-0.4985;MQ=58.61;MQ0=0;MQRankSum=-0.120;QD=1.05;ReadPosRankSum=-16.003 GT:AD:DP:GQ:PL 0/0:31,14:45:33.09:0,33,896 0/1:39,28:67:21.44:21,0,1147 0/1:26,14:41:38.96:39,0,692 0/1:51,34:85:63:63,0,1483 0/1:70,39:109:75.95:76,0,2224 0/1:43,28:71:3.19:3,0,1256 0/0:35,20:55:55.68:0,56,1170 0/0:43,23:66:59.55:0,60,1367 0/1:32,20:52:14.23:14,0,955 0/0:20,10:30:5.46:0,5,559 0/1:16,14:31:78.77:79,0,492 0/1:28,21:49:15.01:15,0,659 0/0:24,13:37:1.68:0,2,678 0/1:24,20:44:9.69:10,0,733 0/1:79,54:134:99:246,0,2241 0/1:24,17:41:25.41:25,0,664 0/0:28,11:39:30.09:0,30,868 0/1:13,13:27:73.57:74,0,396 0/1:33,24:57:99:137,0,947 0/0:40,32:73:53.44:0,53,1212 0/1:31,25:56:91.33:91,0,750 0/1:19,25:44:10.91:11,0,535 0/0:51,34:85:52.04:0,52,1610 0/0:36,27:64:67.34:0,67,1027 0/1:40,33:74:2.53:0,1,1286 0/0:30,22:54:43.90:0,44,974 0/1:20,10:31:25.79:26,0,477 0/0:26,16:42:1.35:0,1,846 0/1:15,15:30:70.02:70,0,348 0/0:35,16:51:15.68:0,16,1055 0/1:14,18:33:84.08:84,0,389 0/1:28,28:56:73.92:74,0,783 0/1:26,17:43:66.39:66,0,780 0/0:23,17:40:44.21:0,44,771 0/1:24,18:42:44.91:45,0,692 0/1:24,21:45:61.74:62,0,675 0/1:41,24:65:78.62:79,0,1103 0/0:23,15:38:22.85:0,23,727 0/1:21,18:39:99:138,0,657 0/1:23,13:36:24.88:25,0,696 0/1:26,19:45:99:120,0,826 0/1:34,13:47:51.74:52,0,900 1 111702020 . A G 4145.78 . AC=2;AF=0.024;AN=84;BaseQRankSum=12.248;DP=6163;DS;Dels=0.00;FS=11.096;HRun=0;HaplotypeScore=2.0563;InbreedingCoeff=-0.0244;MQ=59.41;MQ0=0;MQRankSum=2.242;QD=13.77;ReadPosRankSum=-0.556 GT:AD:DP:GQ:PL 0/0:101,0:101:99:0,274,3272 0/0:98,0:98:99:0,268,3203 0/0:94,0:95:99:0,265,3175 0/0:250,0:250:99:0,650,7929 0/0:244,0:244:99:0,644,7945 0/0:246,0:246:99:0,644,8105 0/0:232,0:232:99:0,593,7490 0/0:244,0:244:99:0,623,7774 0/0:123,0:123:99:0,328,3908 0/0:90,0:90:99:0,247,2927 0/0:102,0:102:99:0,280,3321 0/0:119,0:119:99:0,334,3932 0/0:107,0:107:99:0,298,3537 0/0:119,0:119:99:0,331,3958 0/0:249,0:249:99:0,683,8086 0/0:80,0:80:99:0,226,2668 0/0:134,0:134:99:0,364,4378 0/1:61,48:109:99:1446,0,1682 0/1:98,94:192:99:2700,0,2665 0/0:165,0:165:99:0,448,5375 0/0:183,0:183:99:0,469,5728 0/0:89,0:90:99:0,235,2836 0/0:249,0:249:99:0,665,8068 0/0:235,0:235:99:0,605,7600 0/0:244,0:244:99:0,644,7942 0/0:243,0:243:99:0,647,7923 0/0:91,0:91:99:0,256,3034 0/0:127,0:127:99:0,343,4110 0/0:102,0:102:99:0,280,3354 0/0:84,0:84:99:0,229,2749 0/0:99,0:99:99:0,280,3320 0/0:179,0:179:99:0,454,5618 0/0:106,0:106:99:0,277,3332 0/0:91,0:91:99:0,250,3010 0/0:107,0:107:99:0,292,3506 0/0:138,0:138:99:0,367,4419 0/0:142,0:142:99:0,388,4666 0/0:121,0:121:99:0,319,3850 0/0:113,0:113:99:0,316,3758 0/0:110,0:110:99:0,310,3693 0/0:84,0:84:99:0,235,2756 0/0:126,0:126:99:0,358,4264 1 111739816 . G C 202.72 . AC=10;AF=0.119;AN=84;BaseQRankSum=-11.881;DP=945;Dels=0.00;FS=690.207;HRun=1;HaplotypeScore=0.5294;InbreedingCoeff=-0.1797;MQ=55.76;MQ0=0;MQRankSum=-0.458;QD=1.39;ReadPosRankSum=-12.414 GT:AD:DP:GQ:PL 0/0:17,5:22:14.69:0,15,523 0/0:13,8:21:11.41:0,11,365 0/0:7,5:12:18.06:0,18,226 0/0:31,13:44:0.71:0,1,1043 0/0:33,12:45:34.50:0,35,1225 0/0:18,6:24:22.55:0,23,624 0/0:11,3:14:27.09:0,27,378 0/0:19,5:24:31.48:0,31,667 0/0:18,6:24:54.15:0,54,659 0/0:15,3:18:10.78:0,11,486 0/0:15,2:17:14.71:0,15,513 0/0:16,11:27:15.14:0,15,495 0/1:5,8:13:49.19:49,0,73 0/0:9,2:11:21.07:0,21,270 0/0:40,25:65:0:0,0,1222 0/1:6,5:11:14.19:14,0,212 0/0:14,6:20:15.52:0,16,503 0/0:10,4:14:30.10:0,30,386 0/1:11,4:15:23.14:23,0,328 0/0:22,8:30:50.63:0,51,650 0/0:12,4:16:33.11:0,33,420 0/0:20,4:24:56.65:0,57,681 0/0:29,8:37:84.27:0,84,1131 0/0:23,5:28:60.18:0,60,806 0/0:22,4:26:66.21:0,66,862 0/0:21,8:29:60.20:0,60,803 0/0:13,3:16:33.10:0,33,412 0/1:18,7:25:7.25:7,0,592 0/1:8,4:12:11.49:11,0,280 0/1:10,6:16:99:112,0,324 0/1:11,5:16:26.04:26,0,357 0/0:23,12:35:4.03:0,4,723 0/0:15,5:20:18.46:0,18,501 0/1:8,4:12:34.59:35,0,231 0/1:10,7:17:36.40:36,0,225 0/0:19,8:27:2.22:2,0,659 0/0:21,8:29:2.53:1,0,649 0/0:11,7:18:5.80:0,6,293 0/1:5,4:9:11.58:12,0,160 0/0:13,4:17:6.01:0,6,467 0/0:18,6:24:23.58:0,24,622 0/0:14,7:21:36.12:0,36,462 1 111739856 . C T 647.19 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.507;DP=1010;Dels=0.00;FS=2.791;HRun=0;HaplotypeScore=0.5159;InbreedingCoeff=-0.0281;MQ=56.96;MQ0=0;MQRankSum=0.545;QD=10.61;ReadPosRankSum=-1.096 GT:AD:DP:GQ:PL 0/0:18,0:18:48.12:0,48,525 0/0:18,0:18:54.14:0,54,597 0/0:15,0:15:36.10:0,36,424 0/0:46,0:46:99:0,117,1445 0/0:58,0:59:99:0,129,1669 0/0:29,0:29:69.21:0,69,868 0/0:17,0:17:42.13:0,42,544 0/0:26,0:26:66.17:0,66,803 0/0:25,0:26:66.17:0,66,755 0/0:17,1:18:3.87:0,4,421 0/0:23,0:23:60.17:0,60,697 0/0:23,0:23:60.16:0,60,682 0/0:11,0:11:33.07:0,33,355 0/0:11,0:11:33.08:0,33,369 0/0:74,0:74:99:0,174,2086 0/0:18,0:18:42.11:0,42,483 0/0:26,0:26:72.17:0,72,815 0/0:18,0:18:48.14:0,48,564 0/0:15,0:15:42.09:0,42,462 0/0:28,0:28:75.20:0,75,857 0/0:19,0:19:51.14:0,51,604 0/0:19,0:19:54.14:0,54,606 0/0:43,0:43:99:0,108,1343 0/0:26,1:27:46.51:0,47,817 0/0:35,0:35:96.27:0,96,1124 0/0:28,0:28:63.17:0,63,786 0/0:18,0:18:45.13:0,45,543 0/0:18,0:18:51.14:0,51,570 0/0:11,0:11:33.07:0,33,346 0/0:15,0:15:36.10:0,36,418 0/0:12,0:12:36.09:0,36,395 0/0:33,0:33:96.25:0,96,1069 0/0:26,0:26:66.18:0,66,754 0/0:14,0:14:42.11:0,42,458 0/0:15,0:15:39.11:0,39,473 0/0:33,0:33:87.25:0,87,1026 0/1:21,16:37:99:413,0,478 0/1:14,10:24:99:297,0,301 0/0:9,0:9:27.06:0,27,294 0/0:21,0:21:60.16:0,60,661 0/0:22,0:22:60.15:0,60,658 0/0:12,0:12:33.09:0,33,382 1 111783982 . C A 27419.51 . AC=27;AF=0.329;AN=82;BaseQRankSum=19.849;DP=3262;DS;Dels=0.00;FS=3.008;HRun=0;HaplotypeScore=19.8931;InbreedingCoeff=0.2822;MQ=59.25;MQ0=0;MQRankSum=-1.444;QD=16.35;ReadPosRankSum=1.994 GT:AD:DP:GQ:PL 0/0:34,0:61:93.26:0,93,1082 0/0:53,0:53:99:0,147,1680 0/0:35,0:67:99:0,99,1118 1/1:2,65:133:99:2243,139,0 1/1:0,74:135:99:2786,220,0 1/1:0,44:109:99:1670,129,0 0/1:44,36:81:99:1030,0,1327 0/0:54,0:100:99:0,159,1976 0/1:31,23:54:99:646,0,876 1/1:0,51:51:99:1809,147,0 0/1:34,41:75:99:1101,0,866 0/1:27,27:54:99:787,0,644 0/1:26,33:59:99:1012,0,680 0/0:54,0:54:99:0,156,1791 0/0:94,1:189:99:0,256,2970 0/0:53,0:53:99:0,153,1710 0/0:33,0:84:96.24:0,96,1071 1/1:1,31:63:87.27:1091,87,0 ./.:.:83:.:0,0,0 0/0:41,0:96:99:0,111,1268 1/1:0,38:78:99:1288,102,0 0/1:27,27:54:99:781,0,690 0/1:76,65:141:99:1977,0,2166 0/1:41,47:88:99:1361,0,1159 0/0:109,0:109:99:0,301,3724 1/1:2,84:86:99:2915,168,0 0/0:23,0:55:69.18:0,69,757 0/0:25,1:63:42.96:0,43,815 0/0:60,0:60:99:0,168,1850 0/0:57,0:57:99:0,159,1782 0/1:26,22:49:99:603,0,705 0/0:50,0:98:99:0,129,1540 0/0:63,0:64:99:0,184,2121 0/0:61,0:61:99:0,171,1942 0/0:44,0:44:99:0,126,1499 0/0:71,1:72:99:0,165,2208 0/1:45,44:89:99:1224,0,1186 0/1:34,40:74:99:1219,0,897 0/0:46,0:75:99:0,126,1442 0/1:28,38:66:99:1183,0,703 0/1:29,25:55:99:693,0,803 0/0:69,1:70:99:0,173,2219 1 111783996 . A G 106017.78 . 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T C 38055.68 . 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G A 20691.96 . 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A G 15219.41 . 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T C 159.51 . AC=2;AF=0.024;AN=84;BaseQRankSum=-16.394;DP=2699;Dels=0.00;FS=71.443;HRun=2;HaplotypeScore=1.2726;InbreedingCoeff=-0.0251;MQ=59.27;MQ0=0;MQRankSum=1.650;QD=1.04;ReadPosRankSum=-7.739 GT:AD:DP:GQ:PL 0/0:43,1:44:99:0,111,1271 0/0:49,2:51:99:0,101,1409 0/0:37,5:42:93.26:0,93,1079 0/0:92,6:98:99:0,244,2812 0/0:117,1:118:99:0,280,3238 0/0:107,4:111:99:0,277,3283 0/0:101,3:104:99:0,265,3094 0/0:87,3:90:99:0,241,2863 0/0:50,7:57:99:0,135,1521 0/0:43,3:46:99:0,111,1314 0/0:42,6:48:77.94:0,78,1322 0/0:46,4:51:70.93:0,71,1272 0/0:37,0:37:75.18:0,75,883 0/0:38,7:45:99:0,105,1213 0/0:124,19:147:38.80:0,39,3228 0/0:28,6:35:45.70:0,46,816 0/0:47,6:53:99:0,123,1421 0/0:48,2:50:99:0,126,1500 0/0:60,15:75:11.93:0,12,1644 0/0:63,1:65:99:0,168,1972 0/1:64,23:87:99:159,0,1717 0/0:61,0:61:99:0,159,1845 0/0:135,0:135:99:0,328,3766 0/0:80,3:83:99:0,202,2345 0/0:90,5:95:99:0,221,2748 0/0:66,1:67:99:0,159,1912 0/0:37,2:39:84.24:0,84,992 0/0:60,3:63:99:0,141,1800 0/0:41,2:43:81.59:0,82,1190 0/0:50,4:54:99:0,123,1481 0/0:37,2:39:84.24:0,84,979 0/0:53,1:54:99:0,138,1614 0/0:42,1:44:96.25:0,96,1111 0/0:42,4:46:99:0,111,1341 0/0:51,8:59:99:0,107,1512 0/0:43,3:46:99:0,117,1360 0/1:50,16:67:62.65:63,0,1265 0/0:48,3:51:99:0,102,1428 0/0:42,4:46:56.08:0,56,1188 0/0:41,6:47:99:0,99,1162 0/0:51,4:55:99:0,106,1538 0/0:49,2:51:99:0,123,1416 1 113202386 . C T 611.72 . 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C T 311.77 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.568;DP=1127;Dels=0.00;FS=4.266;HRun=0;HaplotypeScore=0.5022;InbreedingCoeff=-0.0244;MQ=59.20;MQ0=0;MQRankSum=-1.490;QD=7.25;ReadPosRankSum=0.185 GT:AD:DP:GQ:PL 0/0:34,0:34:90.23:0,90,1057 0/0:28,0:28:78.22:0,78,931 0/0:20,0:20:54.16:0,54,658 0/0:41,0:41:99:0,117,1493 0/0:27,0:27:72.22:0,72,933 0/0:30,0:30:84.25:0,84,1059 0/0:16,0:16:48.16:0,48,642 0/0:17,0:17:42.12:0,42,516 0/0:20,0:20:57.17:0,57,690 0/0:18,0:18:48.14:0,48,567 0/0:29,0:29:78.19:0,78,931 0/0:22,0:22:60.14:0,60,713 0/0:24,0:24:63.17:0,63,768 0/0:36,0:36:99:0,99,1163 0/0:74,0:74:99:0,196,2359 0/0:24,0:24:63.19:0,63,771 0/0:15,0:15:42.12:0,42,496 0/0:27,0:27:75.19:0,75,854 0/0:30,0:30:81.24:0,81,965 0/0:38,0:38:99:0,99,1195 0/0:34,0:34:93.28:0,93,1119 0/0:25,0:25:60.18:0,60,751 0/0:32,0:32:87.26:0,87,1133 0/0:18,0:18:54.13:0,54,657 0/0:28,0:28:75.24:0,75,985 0/0:16,0:16:45.14:0,45,578 0/0:14,0:14:39.11:0,39,451 0/0:25,0:25:75.23:0,75,916 0/0:21,0:21:57.17:0,57,699 0/0:25,0:25:66.18:0,66,789 0/0:20,0:20:54.15:0,54,650 0/0:47,0:47:99:0,117,1444 0/0:19,0:19:51.14:0,51,609 0/1:15,9:25:99:212,0,455 0/1:12,6:18:99:162,0,371 0/0:21,0:21:63.18:0,63,732 0/0:37,0:40:96.28:0,96,1150 0/0:26,0:26:72.21:0,72,859 0/0:27,0:27:78.19:0,78,892 0/0:33,0:33:93.26:0,93,1090 0/0:19,0:19:54.16:0,54,640 0/0:24,0:24:69.16:0,69,800 1 113239382 . G A 5576.08 . AC=24;AF=0.286;AN=84;BaseQRankSum=-10.245;DP=509;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.5827;InbreedingCoeff=-0.0563;MQ=57.47;MQ0=0;MQRankSum=1.424;QD=20.50;ReadPosRankSum=2.887 GT:AD:DP:GQ:PL 0/0:6,0:6:18.03:0,18,208 0/0:15,0:15:45.12:0,45,541 0/0:8,0:8:18.06:0,18,235 0/1:10,12:22:99:364,0,333 0/1:11,7:18:99:203,0,380 0/1:4,5:9:99:151,0,131 0/1:1,3:4:28.61:98,0,29 0/0:13,0:13:33.11:0,33,441 0/1:5,6:11:99:191,0,127 0/1:8,5:13:99:139,0,199 0/0:6,0:6:12.04:0,12,149 0/0:8,0:8:18.06:0,18,234 0/0:12,0:12:33.10:0,33,416 0/0:10,0:10:24.07:0,24,307 1/1:0,49:49:99:1511,126,0 0/1:8,5:13:99:142,0,178 0/1:4,4:8:95.36:116,0,95 0/1:4,5:9:86.63:152,0,87 0/1:7,9:17:99:284,0,185 0/0:26,0:26:75.24:0,75,939 0/0:15,0:15:39.12:0,39,498 0/0:8,0:8:24.08:0,24,309 1/1:0,14:14:42.12:479,42,0 0/1:2,5:7:60.82:142,0,61 0/1:2,3:5:56.96:95,0,57 0/1:3,1:4:27.28:27,0,104 0/0:10,0:10:27.09:0,27,349 0/1:4,7:11:88.52:196,0,89 0/0:7,0:7:18.06:0,18,221 0/0:10,0:10:27.09:0,27,341 0/0:13,0:13:39.12:0,39,497 0/1:6,9:15:99:280,0,154 0/0:19,0:19:48.15:0,48,609 0/1:5,9:14:99:279,0,143 0/0:5,0:5:12.04:0,12,148 1/1:0,12:12:36.11:420,36,0 0/0:17,0:17:39.12:0,39,501 0/1:2,3:5:61.94:91,0,62 0/0:7,0:7:21.05:0,21,242 0/0:10,0:10:30.09:0,30,369 0/0:12,0:12:33.10:0,33,407 0/1:5,7:12:99:217,0,121 1 113252851 . CTTG C 1309.92 . 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C T 2979.54 . 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A G 53745.27 . 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T G 187.97 . 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C T 673.63 . 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A G 56591.65 . 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A G 7578.50 . 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G A 20529 . 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G A 853.35 . 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T C 37555.48 . 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G C 215756.19 . 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C T 11795.77 . 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G A 1195.59 . 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A G 14243.01 . 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A G 2413.93 . 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C T 974.64 . 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G A 532.54 . 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A G 5180.99 . 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A AG 6.57 . 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C T 6917.81 . 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G A 2157.27 . 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G T 2123.66 . 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G A 25976.26 . 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C T 13715.53 . 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G T 7417.72 . 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G A 4482.89 . AC=6;AF=0.071;AN=84;BaseQRankSum=-5.635;DP=3602;Dels=0.00;FS=2.850;HRun=0;HaplotypeScore=1.1944;InbreedingCoeff=-0.0769;MQ=59.40;MQ0=0;MQRankSum=0.061;QD=12.38;ReadPosRankSum=-1.576 GT:AD:DP:GQ:PL 0/0:72,0:72:99:0,190,2316 0/0:57,0:57:99:0,162,1919 0/1:41,33:74:99:878,0,1120 0/0:211,0:211:99:0,557,7249 0/0:165,0:168:99:0,448,5878 0/0:126,0:126:99:0,334,4358 0/0:134,0:135:99:0,361,4732 0/0:127,0:127:99:0,340,4464 0/0:75,0:75:99:0,205,2444 0/0:66,0:66:99:0,178,2156 0/0:62,0:62:99:0,172,2065 0/0:70,0:70:99:0,193,2294 0/1:25,26:51:99:704,0,652 0/0:74,0:74:99:0,208,2518 0/0:176,0:176:99:0,475,5692 0/0:50,0:50:99:0,144,1706 0/0:61,0:61:99:0,162,1971 0/0:56,0:56:99:0,153,1852 0/0:78,0:78:99:0,205,2458 0/0:102,0:103:99:0,289,3377 0/0:105,0:105:99:0,268,3275 0/0:56,0:56:99:0,162,1920 0/0:178,0:178:99:0,472,6243 0/0:110,0:110:99:0,289,3842 0/0:121,1:122:99:0,287,4213 0/0:125,1:126:99:0,288,4177 0/0:52,0:52:99:0,141,1665 0/0:50,0:50:99:0,141,1671 0/0:62,0:62:99:0,177,2099 0/0:57,1:59:99:0,130,1881 0/0:63,0:63:99:0,175,2115 0/0:82,0:82:99:0,196,2388 0/0:88,0:88:99:0,226,2704 0/1:33,20:53:99:547,0,918 0/0:59,0:59:99:0,172,2042 0/1:34,30:64:99:819,0,981 0/0:63,0:63:99:0,181,2134 0/0:73,0:73:99:0,196,2380 0/0:64,0:64:99:0,181,2137 0/1:29,30:59:99:828,0,823 0/0:60,0:60:99:0,168,2020 0/1:35,26:61:99:706,0,987 1 120342382 . T TG 628.94 . AC=17;AF=0.202;AN=84;BaseQRankSum=-6.131;DP=5508;DS;FS=1008.583;HRun=2;HaplotypeScore=352.1809;InbreedingCoeff=-0.2870;MQ=57.91;MQ0=0;MQRankSum=1.340;QD=0.30;ReadPosRankSum=-12.005 GT:AD:DP:GQ:PL 0/1:105,0:105:23.53:24,0,1371 0/1:110,0:110:20.05:20,0,1541 0/1:70,19:89:4.01:4,0,1162 0/1:245,2:247:82.44:82,0,2660 0/1:213,0:213:99:164,0,2558 0/0:188,1:187:35.45:0,35,2307 0/0:154,0:153:91.84:0,92,2384 0/0:193,0:192:99:0,184,2687 0/0:86,0:86:39.15:0,39,1294 0/0:90,0:90:9.27:0,9,1190 0/1:60,28:88:51.39:51,0,1206 0/1:92,0:92:5.44:5,0,1467 0/0:85,0:85:50.85:0,51,1289 0/1:104,2:106:78.60:79,0,1543 0/0:240,3:243:71.48:0,71,4006 0/0:75,0:75:11.49:0,11,1079 0/1:104,0:104:22.10:22,0,1562 0/1:74,23:97:30.09:30,0,1302 0/0:168,1:169:99:0,104,2552 0/0:202,0:202:99:0,111,3115 0/1:150,1:151:51.21:51,0,1880 0/0:114,0:114:92.26:0,92,1870 0/0:241,0:240:1.21:0,1,2938 0/0:149,0:148:46.72:0,47,1998 0/1:191,0:191:42.48:42,0,2071 0/0:165,1:164:99:0,183,2537 0/1:88,0:88:6.27:6,0,960 0/0:100,0:100:9.39:0,9,1453 0/1:101,0:101:80.29:80,0,1235 0/0:95,0:95:8.57:0,9,1161 0/0:89,1:90:59.76:0,60,1533 0/0:164,0:164:0.09:0,0,2321 0/0:121,0:120:32.54:0,33,1488 0/0:104,0:104:43.61:0,44,1456 0/0:102,0:102:3:0,0,1269 0/1:129,1:130:43.57:44,0,2084 0/0:152,1:153:54.18:0,54,2113 0/0:111,0:111:75.63:0,76,1352 0/0:100,2:102:2.03:2,0,1260 0/1:110,0:110:57.23:57,0,1397 0/1:88,1:89:25.26:25,0,1278 0/0:99,0:99:27.33:0,27,1249 1 120342385 . C G 1169.94 . AC=15;AF=0.179;AN=84;BaseQRankSum=-21.989;DP=5035;DS;Dels=0.00;FS=967.017;HRun=2;HaplotypeScore=3.5835;InbreedingCoeff=-0.2427;MQ=58.78;MQ0=0;MQRankSum=1.259;QD=0.60;ReadPosRankSum=-18.200 GT:AD:DP:GQ:PL 0/1:59,35:94:40.60:41,0,1543 0/0:71,30:101:3.56:0,4,1895 0/0:51,7:59:99:0,117,1413 0/1:113,109:222:99:133,0,3152 0/1:107,96:204:99:214,0,3282 0/0:107,78:185:92.41:0,92,2871 0/0:80,66:146:46.11:0,46,2441 0/0:109,76:186:99:0,154,3016 0/0:51,32:83:51.61:0,52,1508 0/0:56,28:85:16.24:0,16,1509 0/0:49,8:58:99:0,117,1427 0/0:57,28:85:36.17:0,36,1643 0/0:50,26:76:40.51:0,41,1386 0/1:62,39:101:99:146,0,1560 0/0:150,69:221:99:0,184,4365 0/1:43,28:71:23.45:23,0,1183 0/0:60,32:93:1.45:0,1,1567 0/0:62,8:73:99:0,138,1686 0/0:104,42:147:99:0,181,3005 0/0:127,69:196:99:0,184,3233 0/1:81,43:126:97.31:97,0,2166 0/0:68,40:108:85.80:0,86,1971 0/1:117,117:234:47.05:47,0,3704 0/0:76,66:142:12.15:0,12,2179 0/1:91,82:173:86.33:86,0,2195 0/0:92,60:152:99:0,186,2803 0/0:43,33:76:4.63:0,5,971 0/0:64,32:96:26.75:0,27,1712 0/1:54,37:91:99:144,0,1459 0/0:52,36:88:2.70:0,3,1321 0/0:52,31:83:53.21:0,53,1687 0/1:104,50:156:62.89:63,0,2240 0/0:72,45:117:44.56:0,45,1842 0/0:59,30:89:50.16:0,50,1598 0/1:61,34:96:36.87:37,0,1450 0/1:79,39:118:99:124,0,2180 0/0:84,45:131:47.44:0,47,2311 0/0:56,51:107:67.37:0,67,1326 0/1:55,35:90:28.20:28,0,1288 0/1:64,36:100:57.68:58,0,1548 0/1:49,32:81:84.37:84,0,1371 0/0:53,41:95:44.73:0,45,1499 1 120381846 . A G 11926.02 . AC=6;AF=0.071;AN=84;BaseQRankSum=23.163;DP=5934;DS;Dels=0.00;FS=17.310;HRun=1;HaplotypeScore=2.1031;InbreedingCoeff=-0.0769;MQ=57.93;MQ0=0;MQRankSum=3.973;QD=14.49;ReadPosRankSum=1.056 GT:AD:DP:GQ:PL 0/0:119,0:119:99:0,319,3943 0/0:148,0:148:99:0,397,4881 0/0:123,0:123:99:0,349,4260 0/1:69,52:121:99:1544,0,1947 0/0:135,0:135:99:0,370,4639 0/1:75,67:142:99:2223,0,2211 0/0:140,0:140:99:0,370,4701 0/1:58,59:117:99:1894,0,1630 0/0:128,0:128:99:0,349,4300 0/1:52,60:112:99:1788,0,1426 0/0:136,0:136:99:0,361,4479 0/0:137,0:137:99:0,376,4607 0/0:103,0:103:99:0,280,3437 0/0:135,0:135:99:0,367,4501 0/0:250,0:250:99:0,671,8084 0/0:97,0:97:99:0,283,3440 0/0:141,0:141:99:0,382,4691 0/0:121,0:122:99:0,334,4119 0/0:228,1:229:99:0,605,7517 0/0:176,0:176:99:0,454,5673 0/0:227,0:227:99:0,590,7289 0/0:155,0:155:99:0,406,5030 0/1:83,65:148:99:1917,0,2452 0/0:110,0:110:99:0,295,3662 0/0:131,0:131:99:0,343,4378 0/0:135,0:135:99:0,343,4352 0/0:119,0:119:99:0,322,3965 0/0:121,0:121:99:0,331,4049 0/0:119,0:119:99:0,328,4011 0/0:130,0:130:99:0,358,4405 0/0:129,0:129:99:0,358,4405 0/1:95,88:183:99:2559,0,2544 0/0:139,0:139:99:0,376,4633 0/0:135,0:135:99:0,379,4680 0/0:143,0:143:99:0,391,4861 0/0:145,0:146:99:0,406,4996 0/0:191,0:193:99:0,521,6390 0/0:166,0:166:99:0,433,5347 0/0:119,0:119:99:0,334,4077 0/0:133,0:133:99:0,358,4367 0/0:119,0:119:99:0,337,4119 0/0:123,0:123:99:0,352,4326 1 120572547 . T C 636.50 . AC=24;AF=0.353;AN=68;BaseQRankSum=5.730;DP=10319;DS;Dels=0.00;FS=20.812;HRun=0;HaplotypeScore=0.1079;InbreedingCoeff=-0.0145;MQ=3.06;MQ0=10033;MQRankSum=-0.446;QD=0.14;ReadPosRankSum=2.200 GT:AD:DP:GQ:PL 0/1:216,34:250:24.42:44,0,24 0/0:200,49:250:3.01:0,3,30 0/0:222,28:250:6.01:0,6,60 0/1:221,29:250:20.67:21,0,21 0/1:206,44:250:20.66:33,0,21 0/0:221,26:247:3.01:0,3,33 0/0:246,0:246:6.01:0,6,60 0/0:214,35:249:3.01:0,3,38 1/1:203,44:248:6.01:60,6,0 1/1:210,40:250:3:27,3,0 0/1:202,48:250:20.67:21,0,21 0/1:201,49:250:68.76:69,0,71 1/1:205,45:250:15.01:144,15,0 ./. 0/0:203,47:250:3:0,3,27 0/1:197,18:215:1.76:0,3,27 0/0:197,52:250:3:0,3,27 0/1:235,15:250:1.76:0,3,25 0/0:249,0:250:6.01:0,6,56 1/1:224,24:248:3:27,3,0 0/1:218,31:250:41.34:41,0,52 ./. ./. ./. 0/0:225,24:249:3.01:0,3,33 ./. 0/0:168,39:207:6.01:0,6,60 0/0:208,42:250:3.01:0,3,33 0/0:200,50:250:6.01:0,6,65 1/1:207,43:250:3.01:33,3,0 ./. 0/1:225,24:250:30.11:32,0,30 ./. 0/1:205,45:250:24.42:51,0,24 0/1:205,45:250:17.67:44,0,18 0/0:197,53:250:3:0,3,27 0/0:224,24:250:3:0,3,27 1/1:214,36:250:9.02:94,9,0 0/1:222,21:243:38.34:38,0,76 0/0:230,20:250:12.02:0,12,120 0/0:188,50:238:6:0,6,53 ./. 1 120572572 . C T 1255.33 . AC=41;AF=0.603;AN=68;BaseQRankSum=-4.831;DP=10048;DS;Dels=0.00;FS=30.065;HRun=2;HaplotypeScore=0.1665;InbreedingCoeff=-0.1257;MQ=3.21;MQ0=9752;MQRankSum=2.824;QD=0.19;ReadPosRankSum=-0.045 GT:AD:DP:GQ:PL 0/1:208,33:241:27.42:31,0,27 0/1:205,44:250:20.66:21,0,38 0/1:210,20:232:17.70:18,0,36 0/0:220,27:248:3:0,3,27 0/1:201,44:245:20.67:21,0,21 0/0:223,21:244:3.01:0,3,33 ./. 0/0:205,42:247:3.01:0,3,39 1/1:201,48:249:9.01:87,9,0 ./. 1/1:199,44:243:3:27,3,0 0/1:183,49:232:50.22:82,0,50 1/1:187,41:228:12:107,12,0 ./. ./. 0/1:202,16:218:17.67:18,0,44 1/1:190,54:244:9.01:90,9,0 0/1:219,15:234:1.76:0,3,25 0/0:245,0:245:3:0,3,27 1/1:206,19:225:3.01:37,3,0 0/1:212,36:248:14.66:77,0,15 1/1:203,47:250:3:27,3,0 ./. 0/1:218,32:250:20.67:21,0,27 1/1:218,26:244:6:53,6,0 1/1:217,28:245:3:27,3,0 0/1:170,43:213:38.33:38,0,78 0/1:197,44:242:24.42:44,0,24 0/1:191,51:242:20.61:21,0,44 1/1:196,51:248:9.02:96,9,0 0/1:195,49:245:20.67:21,0,27 0/0:225,22:247:3.01:0,3,36 ./. 1/1:200,45:245:9.01:90,9,0 1/1:195,48:243:6:53,6,0 1/1:171,47:220:9.01:90,9,0 ./. 1/1:200,41:241:15.02:147,15,0 0/1:223,19:242:17.67:44,0,18 0/1:219,16:235:17.67:18,0,44 0/0:197,52:249:3:0,3,27 ./. 1 120611960 . C T 532.72 . AC=19;AF=0.226;AN=84;BaseQRankSum=-4.358;DP=481;Dels=0.00;FS=33.688;HRun=0;HaplotypeScore=2.0569;InbreedingCoeff=-0.3165;MQ=37.53;MQ0=14;MQRankSum=-1.016;QD=2.03;ReadPosRankSum=-0.162 GT:AD:DP:GQ:PL 0/1:5,1:6:8.67:9,0,110 0/0:11,0:11:27.04:0,27,282 0/0:4,0:4:12.01:0,12,111 0/1:18,4:23:48.46:48,0,361 0/0:15,1:16:36.08:0,36,431 0/1:21,3:25:12.33:12,0,501 0/1:7,2:11:48.54:49,0,129 0/1:12,3:15:66.21:66,0,243 0/0:11,0:11:33.02:0,33,303 0/0:7,0:7:18.03:0,18,175 0/0:11,0:11:27.04:0,27,267 0/1:3,1:4:19.52:20,0,90 0/1:3,1:5:14.66:15,0,77 0/1:5,2:7:48.52:49,0,130 0/1:31,7:40:76.20:76,0,558 0/1:12,4:17:59.04:59,0,238 0/1:10,2:12:25.33:25,0,178 0/0:5,0:5:9.01:0,9,91 0/1:3,2:5:24.41:24,0,57 0/0:13,1:14:6.46:0,6,350 0/1:12,2:14:9.40:9,0,187 0/1:14,4:18:75.43:75,0,261 0/1:13,7:22:99:105,0,327 0/0:8,0:8:15.04:0,15,196 0/0:13,0:13:27.07:0,27,333 0/0:11,2:13:30.07:0,30,329 0/1:8,2:10:9.40:9,0,184 0/0:5,0:5:12.02:0,12,121 0/0:5,0:5:6.01:0,6,55 0/1:16,2:18:6.28:6,0,392 0/0:11,1:12:30.06:0,30,336 0/0:15,0:15:39.08:0,39,435 0/0:6,0:6:12.02:0,12,120 0/1:3,1:4:24.11:24,0,73 0/0:5,0:5:12.02:0,12,128 0/0:10,1:11:24.05:0,24,267 0/0:8,2:11:15.01:0,15,153 0/1:4,2:6:7.68:8,0,96 0/0:7,0:7:12:0,12,107 0/0:11,2:13:1.29:5,0,222 0/0:10,1:11:3.40:0,3,262 0/0:5,0:5:15.04:0,15,170 1 120611964 . G C 2673.95 . AC=35;AF=0.417;AN=84;BaseQRankSum=3.738;DP=504;Dels=0.00;FS=2.234;HRun=1;HaplotypeScore=2.0122;InbreedingCoeff=-0.7078;MQ=37.22;MQ0=21;MQRankSum=0.264;QD=6.19;ReadPosRankSum=0.928 GT:AD:DP:GQ:PL 0/1:4,3:7:74.61:93,0,75 0/0:11,0:11:27.05:0,27,280 0/1:3,2:5:40.31:40,0,69 0/1:16,8:24:99:136,0,367 0/1:9,9:18:99:185,0,179 0/1:20,5:25:99:105,0,462 0/0:11,0:11:27.05:0,27,283 0/1:9,6:15:99:119,0,214 0/1:3,8:11:52.96:164,0,53 0/1:3,3:6:59.99:83,0,60 0/1:8,2:10:34.05:34,0,194 0/1:4,2:6:21.95:22,0,101 0/1:6,1:7:18.64:19,0,80 0/1:4,3:7:48.94:49,0,111 0/1:20,20:40:99:357,0,360 0/1:16,2:18:14.83:15,0,376 0/1:13,2:15:2.80:0,0,260 0/0:4,0:4:12.02:0,12,119 0/0:5,0:5:12.01:0,12,118 0/1:10,4:14:67.01:67,0,238 0/1:9,7:16:97.69:98,0,147 0/1:13,7:20:94.33:94,0,305 0/0:22,0:22:45.11:0,45,524 0/1:4,5:9:74.96:113,0,75 0/1:10,6:16:99:141,0,208 0/1:13,1:14:9.94:10,0,256 0/1:5,6:11:99:133,0,106 0/1:3,2:5:18.67:19,0,57 0/1:2,3:5:18.66:46,0,19 0/1:15,4:19:76.84:77,0,362 0/1:9,3:12:85.55:86,0,187 0/0:11,2:13:1.41:0,1,269 0/1:4,3:7:40.31:40,0,69 0/1:2,2:4:45.27:45,0,52 0/1:4,1:5:12.65:13,0,103 0/1:8,2:11:38.20:38,0,149 0/1:6,4:10:45.13:87,0,45 0/1:3,3:6:38.34:68,0,38 0/1:3,4:7:40.31:71,0,40 0/1:10,4:14:70.03:70,0,200 0/1:7,6:13:99:109,0,155 0/0:6,0:6:15.04:0,15,176 1 120612002 . CGG C 2092.97 . 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G A 2883.02 . 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C T 237.75 . AC=9;AF=0.173;AN=52;BaseQRankSum=3.677;DP=4715;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0320;InbreedingCoeff=0.1025;MQ=3.37;MQ0=4664;MQRankSum=-3.138;QD=0.30;ReadPosRankSum=0.984 GT:AD:DP:GQ:PL ./. ./. 0/0:94,0:94:6.01:0,6,62 0/1:98,40:138:54.83:55,0,55 1/1:64,60:124:12.03:134,12,0 0/0:140,0:140:3.01:0,3,33 0/0:117,0:117:12.03:0,12,137 ./. 0/0:69,19:88:3.01:0,3,32 1/1:61,20:81:3.01:33,3,0 ./. ./. ./. ./. 0/0:192,56:250:6:0,6,56 0/0:84,0:84:9.02:0,9,93 ./. ./. 0/1:145,36:184:50.05:50,0,53 ./. 0/0:131,29:160:3:0,3,28 0/0:104,0:104:3.01:0,3,31 0/0:132,0:132:3.01:0,3,37 0/0:124,0:124:3.01:0,3,32 ./. 0/0:135,0:135:12.03:0,12,134 ./. ./. 0/0:63,13:76:6.02:0,6,65 0/0:96,0:96:3.01:0,3,32 0/0:87,0:87:3.01:0,3,30 0/1:141,32:173:27.42:27,0,27 0/0:97,0:97:3:0,3,28 0/0:89,0:89:3.01:0,3,32 ./. ./. 0/0:154,27:181:9.02:0,9,93 1/1:75,30:105:3.01:33,3,0 0/0:92,18:110:3.01:0,3,32 0/0:109,0:109:3.01:0,3,32 0/0:88,0:88:3.01:0,3,33 ./. 1 144855782 . C T 654.73 . 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T C 11660.44 . 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A G 10868.66 . 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G C 30005.71 . 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A T 116336.77 . 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C G 75528.34 . 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C T 35908.74 . 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C T 21604.69 . 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C T 22876.50 . 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A C 2424.08 . 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C T 34769.81 . 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C T 2612.40 . 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G A 347.80 . 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C T 627.79 . 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A G 108055.62 . 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A C 3153 . 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T C 40307.59 . AC=42;AF=0.500;AN=84;BaseQRankSum=-1.065;DP=7927;DS;Dels=0.00;FS=6.832;HRun=0;HaplotypeScore=51.6527;InbreedingCoeff=-1.0000;MQ=59.15;MQ0=1;MQRankSum=1.126;QD=5.08;ReadPosRankSum=-0.947 GT:AD:DP:GQ:PL 0/1:120,45:165:99:970,0,3600 0/1:145,32:177:99:596,0,4393 0/1:125,39:164:99:851,0,3824 0/1:181,69:250:99:1617,0,5537 0/1:178,35:213:99:687,0,5554 0/1:182,49:231:99:1149,0,5680 0/1:136,79:215:99:2275,0,4156 0/1:167,63:230:99:1682,0,4850 0/1:115,46:161:99:1065,0,3511 0/1:117,35:152:99:737,0,3552 0/1:123,41:164:99:964,0,3766 0/1:127,39:166:99:820,0,3987 0/1:109,35:144:99:736,0,3306 0/1:127,38:165:99:820,0,3977 0/1:195,55:250:99:1037,0,5962 0/1:94,38:132:99:929,0,2803 0/1:123,41:164:99:903,0,3849 0/1:120,42:162:99:888,0,3737 0/1:196,53:250:99:1018,0,5969 0/1:197,53:250:99:1064,0,6105 0/1:184,65:249:99:1462,0,5456 0/1:170,57:227:99:1301,0,5004 0/1:179,62:241:99:1621,0,5409 0/1:166,23:189:99:290,0,5059 0/1:177,30:207:99:561,0,5477 0/1:169,21:190:99:257,0,5256 0/1:94,28:122:99:594,0,2893 0/1:125,48:173:99:1174,0,3708 0/1:124,34:158:99:682,0,3786 0/1:119,41:160:99:940,0,3614 0/1:119,48:167:99:1118,0,3714 0/1:180,61:242:99:1409,0,5396 0/1:170,33:203:99:521,0,5141 0/1:133,43:176:99:968,0,4119 0/1:130,40:170:99:826,0,4053 0/1:135,40:175:99:859,0,4162 0/1:194,53:247:99:1003,0,5846 0/1:127,38:165:99:821,0,3927 0/1:131,47:178:99:1010,0,4144 0/1:130,47:177:99:1103,0,3927 0/1:113,32:145:99:704,0,3543 0/1:138,22:160:99:278,0,4297 1 145115883 . G T 912.59 . 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C G 386.88 . AC=12;AF=0.143;AN=84;BaseQRankSum=-18.514;DP=3400;DS;Dels=0.00;FS=1460.138;HRun=1;HaplotypeScore=1.4840;InbreedingCoeff=-0.1804;MQ=58.55;MQ0=0;MQRankSum=0.690;QD=0.39;ReadPosRankSum=-18.627 GT:AD:DP:GQ:PL 0/0:32,13:45:52.01:0,52,1009 0/0:37,26:63:64.96:0,65,1177 0/1:36,30:66:8.75:9,0,960 0/1:62,73:135:33.44:33,0,1797 0/0:65,55:120:26.89:0,27,2116 0/0:56,38:94:25.49:0,25,1811 0/1:37,38:76:43.06:43,0,1057 0/0:44,42:86:73.48:0,73,1339 0/0:46,27:73:62.35:0,62,1428 0/0:43,20:63:53.46:0,53,1331 0/0:36,20:56:12.37:0,12,1176 0/0:37,34:71:17.97:0,18,1210 0/0:37,13:50:11.70:0,12,1164 0/0:41,15:58:54.42:0,54,1283 0/1:120,90:212:79.22:79,0,3673 0/1:30,15:45:17.36:17,0,800 0/1:40,33:73:61.12:61,0,1171 0/0:41,16:58:83.77:0,84,1398 0/1:50,37:88:37.43:37,0,1282 0/0:86,53:140:99:0,151,2578 0/0:58,28:87:53.72:0,54,1787 0/0:46,38:84:51.11:0,51,1345 0/0:83,85:168:99:0,153,2661 0/0:41,35:76:7.58:0,8,1215 0/0:47,53:100:62.75:0,63,1550 0/0:47,34:81:89.23:0,89,1435 0/0:32,22:54:31.99:0,32,995 0/1:32,27:59:36.33:36,0,954 0/1:32,27:59:43.63:44,0,1005 0/0:34,27:61:85.12:0,85,1056 0/0:36,26:62:32.11:0,32,998 0/0:77,45:122:86.63:0,87,2172 0/0:47,37:84:1.87:3,0,1326 0/0:48,24:72:47.52:0,48,1492 0/1:48,28:76:34.04:34,0,1584 0/0:44,21:65:80.75:0,81,1332 0/0:58,36:94:65.57:0,66,1671 0/0:51,22:73:72.13:0,72,1539 0/1:38,20:58:96.88:97,0,1086 0/0:43,36:79:14.21:0,14,1185 0/1:33,18:51:36.40:36,0,944 0/0:37,25:63:41.14:0,41,1149 1 145530939 . C T 1748.09 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.977;DP=2755;Dels=0.00;FS=0.463;HRun=0;HaplotypeScore=2.0908;InbreedingCoeff=-0.0244;MQ=59.22;MQ0=0;MQRankSum=1.295;QD=11.65;ReadPosRankSum=0.365 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,147,1765 0/0:45,0:45:99:0,123,1473 0/0:46,0:46:99:0,126,1472 0/0:111,0:111:99:0,304,3790 0/0:94,0:95:99:0,265,3292 0/0:83,0:83:99:0,226,2756 0/0:97,0:97:99:0,262,3282 0/0:74,0:74:99:0,205,2483 0/0:50,0:50:99:0,141,1599 0/0:59,0:59:99:0,165,1888 0/0:50,0:50:99:0,135,1571 0/0:75,0:75:99:0,214,2471 0/0:44,1:45:86.88:0,87,1305 0/0:46,0:46:99:0,129,1467 0/0:221,0:221:99:0,545,6536 0/0:49,0:49:99:0,132,1546 0/0:41,0:41:99:0,117,1376 0/0:57,0:57:99:0,162,1846 0/0:82,0:82:99:0,214,2498 0/0:62,0:62:99:0,171,1975 0/1:45,25:70:99:646,0,1189 0/0:60,0:60:99:0,159,1867 0/0:123,0:123:99:0,325,4144 0/0:67,0:67:99:0,175,2209 0/0:75,0:75:99:0,202,2578 0/0:61,0:61:99:0,162,2014 0/0:44,0:44:99:0,120,1395 0/0:42,0:42:99:0,120,1329 0/0:45,0:45:99:0,117,1382 0/0:52,0:53:99:0,135,1562 0/0:49,0:49:99:0,138,1582 0/1:41,39:80:99:1164,0,984 0/0:55,0:55:99:0,153,1748 0/0:69,0:69:99:0,198,2222 0/0:50,0:50:99:0,141,1637 0/0:63,0:63:99:0,162,1930 0/0:72,0:72:99:0,187,2216 0/0:36,0:36:99:0,99,1164 0/0:44,0:44:99:0,132,1492 0/0:56,0:56:99:0,162,1814 0/0:44,0:44:99:0,126,1434 0/0:57,0:57:99:0,162,1851 1 145530940 . G A 1153.58 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.946;DP=2754;Dels=0.00;FS=2.766;HRun=2;HaplotypeScore=2.0936;InbreedingCoeff=-0.0244;MQ=59.23;MQ0=0;MQRankSum=1.194;QD=11.65;ReadPosRankSum=-1.108 GT:AD:DP:GQ:PL 0/1:30,25:55:99:723,0,861 0/1:27,17:44:99:493,0,734 0/0:42,0:42:99:0,114,1380 0/0:112,0:112:99:0,304,3907 0/0:95,0:95:99:0,268,3488 0/0:84,0:84:99:0,232,3028 0/0:95,0:95:99:0,259,3368 0/0:74,0:74:99:0,202,2631 0/0:50,0:50:99:0,141,1716 0/0:57,0:57:99:0,159,1929 0/0:50,0:50:99:0,138,1680 0/0:75,0:75:99:0,214,2540 0/0:43,0:43:99:0,117,1448 0/0:46,0:46:99:0,132,1590 0/0:216,0:216:99:0,530,6586 0/0:50,0:51:99:0,135,1637 0/0:40,0:40:99:0,114,1334 0/0:57,0:57:99:0,165,1960 0/0:82,0:82:99:0,211,2508 0/0:62,0:62:99:0,168,2023 0/0:69,0:70:99:0,181,2237 0/0:60,0:60:99:0,159,1887 0/0:124,0:124:99:0,328,4350 0/0:68,0:68:99:0,178,2305 0/0:79,0:79:99:0,208,2736 0/0:63,0:63:99:0,163,2140 0/0:43,0:43:99:0,120,1428 0/0:43,0:43:99:0,126,1514 0/0:45,0:45:99:0,117,1415 0/0:53,0:53:99:0,138,1684 0/0:49,0:49:99:0,138,1706 0/0:82,0:82:99:0,226,2792 0/0:54,0:54:99:0,156,1812 0/0:69,0:69:99:0,205,2381 0/0:47,0:47:99:0,135,1623 0/0:65,0:65:99:0,169,2085 0/0:73,0:73:99:0,187,2210 0/0:37,0:37:99:0,102,1193 0/0:45,0:45:99:0,129,1515 0/0:57,0:57:99:0,168,1987 0/0:42,0:42:99:0,120,1429 0/0:56,0:56:99:0,162,1921 1 145537513 . C A 1850.52 . AC=1;AF=0.012;AN=84;BaseQRankSum=-10.576;DP=8551;DS;Dels=0.00;FS=12.332;HRun=0;HaplotypeScore=5.6052;InbreedingCoeff=-0.0120;MQ=59.47;MQ0=0;MQRankSum=0.392;QD=11.57;ReadPosRankSum=-0.083 GT:AD:DP:GQ:PL 0/0:204,0:204:99:0,551,6966 0/0:211,0:211:99:0,563,7203 0/0:200,0:200:99:0,548,6883 0/0:224,1:225:99:0,626,8269 0/0:196,0:196:99:0,554,7358 0/0:203,1:204:99:0,557,7367 0/0:221,0:221:99:0,611,8096 0/0:199,0:199:99:0,560,7424 0/0:200,0:200:99:0,557,7023 0/0:196,0:196:99:0,536,6802 0/0:189,0:189:99:0,503,6322 0/0:192,0:193:99:0,545,6897 0/0:156,1:157:99:0,387,5231 0/0:181,1:182:99:0,477,6215 0/0:250,0:250:99:0,716,8716 0/1:89,71:160:99:1897,0,2589 0/0:216,0:216:99:0,590,7494 0/0:205,0:205:99:0,575,7172 0/0:209,0:209:99:0,578,7075 0/0:218,0:218:99:0,611,7630 0/0:225,0:225:99:0,602,7285 0/0:220,0:220:99:0,599,7612 0/0:224,0:224:99:0,614,8073 0/0:228,0:228:99:0,614,8199 0/0:189,0:190:99:0,524,6837 0/0:204,0:204:99:0,560,7464 0/0:149,0:149:99:0,388,4906 0/0:225,0:225:99:0,608,7629 0/0:193,0:193:99:0,518,6544 0/0:212,0:212:99:0,557,7121 0/0:187,1:188:99:0,506,6550 0/0:210,0:210:99:0,590,7444 0/0:215,1:216:99:0,527,7080 0/0:205,0:205:99:0,557,6990 0/0:189,0:189:99:0,515,6518 0/0:209,0:209:99:0,557,7127 0/0:243,1:245:99:0,665,8171 0/0:176,0:176:99:0,487,6121 0/0:223,1:224:99:0,614,7745 0/0:210,0:210:99:0,587,7425 0/0:177,0:177:99:0,475,6041 0/0:197,0:197:99:0,530,6673 1 145558835 . G A 5117.98 . AC=2;AF=0.024;AN=84;BaseQRankSum=-12.631;DP=5745;DS;Dels=0.00;FS=25.328;HRun=1;HaplotypeScore=3.5932;InbreedingCoeff=-0.0244;MQ=59.29;MQ0=0;MQRankSum=1.244;QD=11.08;ReadPosRankSum=0.699 GT:AD:DP:GQ:PL 0/0:102,0:102:99:0,274,3453 0/0:109,0:110:99:0,277,3559 0/0:89,0:89:99:0,247,3096 0/1:143,107:250:99:2870,0,4089 0/1:126,86:212:99:2248,0,3689 0/0:213,0:213:99:0,527,7092 0/0:169,0:169:99:0,433,5805 0/0:189,0:189:99:0,488,6522 0/0:94,0:94:99:0,253,3216 0/0:90,0:90:99:0,247,3084 0/0:87,0:87:99:0,229,2905 0/0:88,0:88:99:0,226,2868 0/0:84,0:84:99:0,226,2852 0/0:77,0:77:99:0,217,2703 0/0:250,0:250:99:0,629,8007 0/0:79,0:79:99:0,220,2753 0/0:102,0:102:99:0,268,3407 0/0:93,0:93:99:0,268,3336 0/0:161,0:161:99:0,421,5249 0/0:227,0:227:99:0,557,7277 0/0:184,0:184:99:0,442,5687 0/0:137,0:137:99:0,358,4617 0/0:249,0:250:99:0,677,9002 0/0:180,0:180:99:0,445,5961 0/0:248,0:249:99:0,614,8286 0/0:164,0:164:99:0,424,5671 0/0:91,0:91:99:0,244,3067 0/0:88,0:88:99:0,235,2998 0/0:104,0:104:99:0,256,3317 0/0:112,0:112:99:0,298,3730 0/0:102,0:104:99:0,265,3425 0/0:180,0:180:99:0,448,5812 0/0:159,0:159:99:0,406,5165 0/0:107,0:107:99:0,286,3594 0/0:103,0:103:99:0,262,3319 0/0:111,0:112:99:0,289,3677 0/0:154,0:154:99:0,418,5187 0/0:103,0:103:99:0,274,3403 0/0:88,0:88:99:0,229,2927 0/0:109,0:109:99:0,283,3602 0/0:89,0:89:99:0,232,2926 0/0:112,0:112:99:0,292,3747 1 145560899 . AGTCCAGC A 850.56 . 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G A 844.68 . AC=16;AF=0.190;AN=84;BaseQRankSum=-17.417;DP=3425;Dels=0.01;FS=1580.256;HRun=1;HaplotypeScore=6.6986;InbreedingCoeff=-0.2394;MQ=58.52;MQ0=0;MQRankSum=-0.222;QD=0.64;ReadPosRankSum=-18.114 GT:AD:DP:GQ:PL 0/0:34,25:59:26.27:0,26,969 0/0:34,20:54:96.30:0,96,1174 0/0:34,20:54:23.30:0,23,983 0/1:59,56:115:37.52:38,0,1731 0/1:76,71:147:69.61:70,0,2503 0/0:72,60:132:58.38:0,58,2222 0/0:53,46:99:99:0,101,1705 0/1:53,47:101:18.15:18,0,1662 0/0:46,26:73:1.81:0,2,1241 0/0:40,26:66:58.43:0,58,1239 0/0:35,22:57:38.97:0,39,1065 0/0:38,23:61:15.84:0,16,1232 0/0:29,19:48:34.45:0,34,761 0/0:32,17:50:31.13:0,31,924 0/0:129,71:200:99:0,109,4050 0/1:32,16:48:39.92:40,0,815 0/0:41,28:69:84.30:0,84,1242 0/0:32,27:59:34.90:0,35,932 0/0:74,33:107:46.71:0,47,2021 0/0:73,46:120:77.40:0,77,2088 0/0:94,34:130:62.88:0,63,2884 0/0:34,27:61:57.53:0,58,913 0/1:67,76:143:43.21:43,0,2152 0/1:44,42:86:5.92:6,0,1463 0/1:72,63:135:56.84:57,0,2162 0/0:40,46:86:25.19:0,25,1303 0/0:25,18:43:67.03:0,67,778 0/1:31,20:51:81.02:81,0,910 0/0:33,24:57:35.97:0,36,990 0/0:42,23:66:22.92:0,23,1273 0/1:31,24:55:99:149,0,887 0/0:78,50:128:99:0,102,2317 0/1:46,45:91:48.08:48,0,1247 0/1:33,23:56:65.60:66,0,854 0/1:30,26:57:81.68:82,0,882 0/1:38,26:64:37.23:37,0,1136 0/0:73,35:109:23.40:0,23,2229 0/1:36,24:60:99:112,0,916 0/0:27,2:29:75.20:0,75,883 0/1:32,22:54:42.81:43,0,925 0/0:45,19:64:90.47:0,90,1326 0/1:28,29:57:99:114,0,801 1 145560918 . G A 3994 . 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G C 3914.28 . AC=8;AF=0.095;AN=84;BaseQRankSum=-3.297;DP=4652;DS;Dels=0.00;FS=35.467;HRun=0;HaplotypeScore=1.4554;InbreedingCoeff=-0.1053;MQ=21.68;MQ0=395;MQRankSum=-1.109;QD=3.29;ReadPosRankSum=-0.274 GT:AD:DP:GQ:PL 0/0:93,0:94:99:0,231,1987 0/0:97,0:97:99:0,240,2046 0/0:83,0:83:99:0,219,1847 0/0:122,0:122:99:0,303,2688 0/0:123,0:123:99:0,294,2632 0/1:111,44:155:99:571,0,2152 0/1:94,43:138:99:664,0,1754 0/0:99,0:99:99:0,246,2196 0/1:92,37:129:99:437,0,1748 0/0:107,0:107:99:0,276,2425 0/1:101,32:133:99:329,0,1979 0/0:79,0:79:99:0,207,1744 0/0:65,0:65:99:0,165,1481 0/1:92,38:131:99:559,0,1741 0/0:250,0:250:99:0,653,5804 0/0:51,0:51:99:0,141,1216 0/0:81,0:81:99:0,204,1764 0/0:83,0:83:99:0,219,1876 0/0:161,0:162:99:0,402,3430 0/0:141,0:141:99:0,372,3246 0/1:144,47:191:99:491,0,2698 0/0:97,0:97:99:0,258,2197 0/0:136,0:136:99:0,348,3043 0/0:86,0:86:99:0,222,1841 0/0:96,0:96:99:0,234,2145 0/0:82,0:82:99:0,210,1899 0/0:66,0:66:99:0,171,1475 0/0:100,0:100:99:0,273,2372 0/0:75,0:75:99:0,201,1723 0/0:90,0:90:99:0,246,2097 0/1:90,25:115:99:218,0,1817 0/1:146,50:196:99:646,0,2772 0/0:96,0:96:99:0,246,2087 0/0:104,0:105:99:0,270,2282 0/0:85,0:85:99:0,219,1917 0/0:95,0:95:99:0,249,2097 0/0:143,0:143:99:0,339,2963 0/0:91,0:91:99:0,231,1924 0/0:93,0:93:99:0,252,2158 0/0:110,0:110:99:0,264,2273 0/0:86,0:86:99:0,228,1930 0/0:95,0:95:99:0,249,2139 1 145752479 . G A 1801.64 . AC=8;AF=0.095;AN=84;BaseQRankSum=-4.351;DP=4788;DS;Dels=0.00;FS=26.594;HRun=1;HaplotypeScore=1.0730;InbreedingCoeff=-0.1053;MQ=15.87;MQ0=2244;MQRankSum=0.229;QD=1.65;ReadPosRankSum=-2.157 GT:AD:DP:GQ:PL 0/0:99,0:99:99:0,120,1026 0/0:97,0:97:99:0,111,943 0/0:98,0:98:99:0,117,1011 0/0:162,0:162:99:0,216,1903 0/0:140,0:140:99:0,216,1976 0/1:102,40:142:99:333,0,1040 0/1:93,38:131:99:272,0,1151 0/0:129,0:129:99:0,153,1438 0/1:103,32:135:99:189,0,983 0/0:100,0:100:99:0,135,1193 0/1:91,34:125:99:172,0,907 0/0:94,0:94:99:0,102,915 0/0:81,0:81:98.93:0,99,905 0/1:85,36:121:99:258,0,814 0/0:223,1:226:99:0,285,2673 0/0:58,0:58:65.92:0,66,557 0/0:96,0:96:95.94:0,96,888 0/0:92,0:92:99:0,129,1094 0/0:137,0:137:99:0,159,1389 0/0:151,0:151:99:0,213,1910 0/1:107,31:138:99:154,0,1094 0/0:101,0:101:99:0,147,1325 0/0:150,0:150:99:0,222,2013 0/0:106,0:107:99:0,132,1114 0/0:107,0:107:99:0,147,1394 0/0:81,0:81:99:0,126,1170 0/0:74,0:74:98.91:0,99,886 0/0:102,0:102:99:0,162,1469 0/0:83,0:83:99:0,111,942 0/0:98,0:98:99:0,144,1293 0/1:78,28:106:99:115,0,804 0/1:141,55:196:99:429,0,1616 0/0:99,0:99:99:0,141,1221 0/0:99,0:99:99:0,129,1098 0/0:108,0:108:99:0,138,1204 0/0:108,0:108:99:0,135,1170 0/0:114,0:114:99:0,144,1329 0/0:110,0:110:99:0,120,1037 0/0:95,0:95:99:0,126,1111 0/0:119,0:119:99:0,123,1083 0/0:94,0:94:99:0,132,1114 0/0:85,0:85:99:0,105,971 1 146039133 . T C 47.78 . AC=6;AF=0.75;AN=8;BaseQRankSum=-0.727;DP=4339;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=0.88;MQ0=4331;MQRankSum=-0.727;QD=0.15;ReadPosRankSum=0.727 GT:AD:DP:GQ:PL ./. 1/1:80,2:82:3.01:33,3,0 ./. ./. ./. ./. ./. ./. ./. ./. ./. 1/1:87,1:88:3.01:33,3,0 ./. ./. ./. ./. ./. ./. ./. ./. 1/1:148,4:152:2.98:22,3,0 ./. ./. 0/0:96,3:99:3.01:0,3,33 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 1 146757092 . A C 2411.83 . AC=1;AF=0.012;AN=84;BaseQRankSum=7.040;DP=7490;DS;Dels=0.00;FS=13.550;HRun=0;HaplotypeScore=3.4184;InbreedingCoeff=-0.0120;MQ=59.56;MQ0=0;MQRankSum=0.748;QD=14.80;ReadPosRankSum=0.467 GT:AD:DP:GQ:PL 0/0:158,0:158:99:0,451,5431 0/0:143,0:143:99:0,415,4954 0/0:111,0:111:99:0,313,3737 0/0:245,0:245:99:0,728,8695 0/0:230,0:230:99:0,668,8108 0/0:218,1:219:99:0,629,7786 0/1:81,82:163:99:2458,0,2432 0/0:219,0:219:99:0,629,7668 0/0:140,0:140:99:0,391,4678 0/0:127,0:127:99:0,370,4400 0/0:144,1:145:99:0,415,4950 0/0:153,0:153:99:0,430,5169 0/0:122,0:122:99:0,355,4240 0/0:159,0:159:99:0,439,5310 0/0:250,0:250:99:0,713,8372 0/0:125,0:125:99:0,358,4261 0/0:176,0:176:99:0,512,6138 0/0:144,0:144:99:0,415,4953 0/0:250,0:250:99:0,659,7959 0/0:250,0:250:99:0,713,8696 0/0:249,0:250:99:0,707,8560 0/0:209,0:209:99:0,590,7028 0/0:225,0:225:99:0,671,8083 0/0:182,0:182:99:0,518,6387 0/0:197,0:197:99:0,572,7005 0/0:137,0:137:99:0,403,4869 0/0:144,0:144:99:0,421,5075 0/0:173,0:173:99:0,497,6004 0/0:133,0:133:99:0,379,4554 0/0:148,0:148:99:0,427,5129 0/0:166,0:166:99:0,478,5757 0/0:246,1:248:99:0,695,8472 0/0:223,0:223:99:0,635,7621 0/0:174,1:175:99:0,511,6136 0/0:165,0:165:99:0,457,5518 0/0:165,0:165:99:0,463,5616 0/0:250,0:250:99:0,677,8173 0/0:167,1:168:99:0,484,5791 0/0:156,0:156:99:0,445,5315 0/0:176,1:177:99:0,505,6068 0/0:146,0:146:99:0,424,5054 0/0:124,0:124:99:0,364,4342 1 147119273 . G A 98265.85 . AC=44;AF=0.524;AN=84;BaseQRankSum=6.350;DP=5979;DS;Dels=0.00;FS=25.677;HRun=0;HaplotypeScore=2.1925;InbreedingCoeff=0.0455;MQ=59.63;MQ0=0;MQRankSum=-0.413;QD=21.01;ReadPosRankSum=1.127 GT:AD:DP:GQ:PL 0/0:121,0:121:99:0,322,3849 0/0:131,0:131:99:0,313,3864 0/0:124,0:124:99:0,322,3937 1/1:0,210:210:99:6988,569,0 1/1:1,197:198:99:6576,500,0 1/1:0,226:226:99:7707,602,0 0/1:126,115:241:99:3135,0,3752 1/1:0,227:227:99:7536,602,0 1/1:0,92:92:99:3081,253,0 0/1:38,45:83:99:1289,0,961 1/1:0,97:97:99:3197,262,0 0/1:48,52:100:99:1359,0,1318 0/1:53,39:92:99:1069,0,1392 0/1:59,38:97:99:1018,0,1699 0/1:126,111:237:99:3066,0,3491 0/1:57,29:87:99:758,0,1623 1/1:3,103:106:99:3363,211,0 0/0:108,0:109:99:0,292,3446 0/1:88,91:179:99:2330,0,2180 1/1:0,182:182:99:6005,484,0 0/1:82,104:186:99:2808,0,2140 0/0:134,1:135:99:0,297,4040 1/1:1,207:208:99:6905,557,0 0/0:225,1:226:99:0,551,7477 0/1:116,89:205:99:2455,0,3323 0/1:115,98:213:99:2745,0,3269 0/0:84,0:84:99:0,232,2718 0/0:124,0:124:99:0,319,3794 0/1:40,49:89:99:1380,0,1053 1/1:0,113:113:99:3567,289,0 1/1:0,97:97:99:3265,268,0 0/1:93,79:172:99:2099,0,2367 0/1:42,51:93:99:1410,0,1142 1/1:1,111:112:99:3695,270,0 0/1:61,67:128:99:1845,0,1649 0/1:53,59:112:99:1665,0,1393 0/1:98,73:171:99:1768,0,2481 0/0:141,0:141:99:0,367,4432 0/1:69,64:133:99:1813,0,1915 0/1:56,44:100:99:1217,0,1486 0/0:106,2:108:99:0,218,3312 0/1:49,41:90:99:1149,0,1411 1 147121977 . C T 96417.17 . AC=84;AF=1.000;AN=84;BaseQRankSum=2.448;DP=2936;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.3693;InbreedingCoeff=-0.0000;MQ=59.23;MQ0=0;MQRankSum=0.435;QD=32.84;ReadPosRankSum=1.297 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1668,135,0 1/1:0,51:51:99:1754,147,0 1/1:0,51:51:99:1655,135,0 1/1:0,119:119:99:3850,313,0 1/1:0,105:105:99:3458,277,0 1/1:1,78:79:99:2703,217,0 1/1:0,80:80:99:2764,223,0 1/1:0,81:81:99:2708,226,0 1/1:0,50:50:99:1692,141,0 1/1:0,47:47:99:1607,135,0 1/1:0,52:52:99:1685,138,0 1/1:0,53:53:99:1710,141,0 1/1:0,47:47:99:1602,135,0 1/1:0,54:54:99:1799,153,0 1/1:0,185:185:99:5832,484,0 1/1:0,47:47:99:1588,132,0 1/1:1,66:67:99:2131,172,0 1/1:0,52:52:99:1705,141,0 1/1:0,73:73:99:2563,211,0 1/1:0,100:100:99:3249,262,0 1/1:0,116:116:99:3827,316,0 1/1:0,60:60:99:2017,171,0 1/1:0,160:160:99:5019,403,0 1/1:0,71:71:99:2287,181,0 1/1:0,94:94:99:3102,256,0 1/1:0,63:63:99:2087,171,0 1/1:0,53:53:99:1747,147,0 1/1:0,51:51:99:1741,144,0 1/1:0,41:41:99:1292,105,0 1/1:0,58:58:99:1902,156,0 1/1:0,51:51:99:1682,135,0 1/1:0,125:125:99:3862,313,0 1/1:1,72:73:99:2355,193,0 1/1:0,51:51:99:1731,144,0 1/1:0,50:50:99:1618,135,0 1/1:0,50:50:99:1740,147,0 1/1:0,71:71:99:2306,196,0 1/1:0,60:60:99:1954,159,0 1/1:0,49:49:99:1590,129,0 1/1:0,43:43:99:1385,111,0 1/1:0,56:56:99:1904,159,0 1/1:0,47:47:99:1547,129,0 1 148011748 . TCTTCCCCTTCTTTTCTTCCC T 911 . AC=2;AF=0.026;AN=76;BaseQRankSum=5.008;DP=8890;DS;FS=0.000;HRun=0;HaplotypeScore=371.3945;InbreedingCoeff=-0.0298;MQ=10.01;MQ0=7715;MQRankSum=0.081;QD=1.48;ReadPosRankSum=-0.106 GT:AD:DP:GQ:PL 0/0:220,0:43:87.26:0,87,5587 0/0:187,0:32:60.18:0,60,4350 0/0:170,0:16:33.11:0,33,2116 0/0:211,0:4:9.03:0,9,569 0/0:239,0:9:18.06:0,18,1331 0/0:220,0:5:12.04:0,12,1057 ./. 0/0:216,0:13:30.10:0,30,2403 0/0:182,0:24:42.14:0,42,3145 0/0:197,0:17:36.12:0,36,2771 0/0:202,0:19:48.16:0,48,3562 0/0:189,0:33:63.22:0,63,4247 0/0:188,0:37:69.24:0,69,4621 0/0:224,0:42:87.28:0,87,5739 0/0:250,0:47:99:0,129,9619 0/0:212,0:16:27.09:0,27,1678 0/0:233,0:50:96.33:0,96,6731 0/0:173,0:16:30.10:0,30,2506 ./.:.:1:.:0,0,0 0/0:250,0:27:51.17:0,51,3446 0/0:250,0:30:63.22:0,63,4477 0/0:195,0:21:39.12:0,39,2783 ./. 0/1:162,4:8:99:476,0,203 0/1:195,4:6:99:505,0,268 0/0:159,0:9:21.07:0,21,1488 0/0:199,0:29:63.22:0,63,4356 0/0:247,0:41:81.28:0,81,5567 0/0:228,0:18:33.11:0,33,2689 0/0:242,0:39:84.29:0,84,5415 0/0:211,0:27:63.20:0,63,4005 0/0:250,0:30:54.19:0,54,3762 0/0:236,0:31:60.21:0,60,4300 0/0:240,0:47:99:0,99,7250 0/0:248,0:38:78.27:0,78,6208 0/0:223,0:61:90.37:0,90,8334 0/0:250,0:29:51.18:0,51,3916 0/0:218,0:38:84.29:0,84,6009 0/0:244,0:42:99:0,99,6248 0/0:166,0:13:33.11:0,33,2465 0/0:200,0:31:66.21:0,66,4423 ./. 1 148011763 . C T 1394.55 . AC=9;AF=0.118;AN=76;BaseQRankSum=-9.284;DP=8866;DS;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=3.6816;InbreedingCoeff=-0.1491;MQ=9.19;MQ0=7904;MQRankSum=2.062;QD=0.68;ReadPosRankSum=-0.514 GT:AD:DP:GQ:PL 0/1:206,10:217:99:166,0,1055 0/1:177,5:182:25.10:25,0,657 0/0:167,0:167:45.12:0,45,502 0/0:223,1:225:9.02:0,9,93 0/0:250,0:250:21.06:0,21,234 0/0:232,4:236:18.05:0,18,206 ./. 0/0:230,0:230:42.12:0,42,467 0/0:177,4:182:51.14:0,51,576 0/0:176,1:177:48.13:0,48,531 0/0:195,3:198:54.14:0,54,589 0/0:179,2:181:78.22:0,78,869 0/0:186,4:190:90.25:0,90,1008 0/1:197,24:221:99:294,0,664 0/1:228,20:250:99:256,0,760 0/0:206,0:206:42.12:0,42,467 0/1:201,18:220:99:211,0,913 0/0:184,1:185:48.13:0,48,535 ./. 0/0:243,5:248:54.12:0,54,595 0/1:236,11:250:49.50:50,0,721 0/0:188,1:189:54.15:0,54,604 ./. 0/0:167,1:169:3.01:0,3,39 0/0:203,1:204:3.01:0,3,33 0/0:172,1:173:27.07:0,27,301 0/0:184,5:189:69.19:0,69,768 0/0:237,2:240:90.25:0,90,1006 0/0:214,8:222:11.69:0,12,431 0/0:236,1:237:99:0,108,1214 0/0:221,0:222:72.20:0,72,808 0/1:221,17:238:99:241,0,304 0/0:244,0:244:72.20:0,72,817 0/0:221,0:221:99:0,120,1346 0/0:224,0:227:78.22:0,78,867 0/0:200,1:201:99:0,150,1673 0/1:230,15:250:99:208,0,246 0/1:206,9:215:67.09:67,0,818 0/0:249,1:250:99:0,129,1438 0/0:179,2:181:42.12:0,42,468 0/0:193,3:196:78.22:0,78,878 ./. 1 148341981 . T C 4989.39 . AC=20;AF=0.238;AN=84;BaseQRankSum=-28.400;DP=10310;DS;Dels=0.00;FS=7.323;HRun=0;HaplotypeScore=3.8458;InbreedingCoeff=-0.3189;MQ=20.43;MQ0=1085;MQRankSum=-2.826;QD=1.00;ReadPosRankSum=-4.868 GT:AD:DP:GQ:PL 0/0:241,0:241:99:0,129,1556 0/0:248,0:248:99:0,135,1673 0/0:245,0:245:99:0,111,1385 0/0:250,0:250:99:0,196,2378 0/0:250,0:250:99:0,126,1542 0/1:188,62:250:99:230,0,1534 0/0:233,0:233:99:0,114,1503 0/1:203,46:250:99:178,0,1517 0/1:202,48:250:99:222,0,1017 0/1:210,40:250:73.06:73,0,1015 0/1:186,62:248:99:250,0,931 0/1:168,76:245:99:311,0,743 0/1:177,64:241:99:268,0,994 0/0:219,31:250:45.09:0,45,1319 0/0:249,1:250:99:0,220,2585 0/0:246,0:246:99:0,117,1448 0/1:193,44:237:85.76:86,0,1446 0/1:183,63:246:99:318,0,874 0/0:229,0:229:99:0,178,2171 0/1:200,50:250:99:289,0,1691 0/1:179,71:250:99:278,0,921 0/1:142,108:250:99:708,0,811 0/0:247,0:247:99:0,153,1953 0/0:250,0:250:99:0,166,2118 0/0:250,0:250:99:0,162,2008 0/0:228,0:228:99:0,135,1716 0/1:155,95:250:99:530,0,768 0/1:167,81:249:99:278,0,686 0/1:200,48:250:99:190,0,1323 0/1:205,44:249:29.57:30,0,1340 0/1:179,70:250:99:202,0,967 0/0:250,0:250:99:0,135,1658 0/0:242,0:242:99:0,120,1489 0/0:211,39:250:2.10:2,0,1090 0/1:179,71:250:99:300,0,918 0/0:250,0:250:99:0,150,1868 0/0:250,0:250:99:0,132,1631 0/1:210,40:250:3.52:4,0,1178 0/0:245,0:245:99:0,102,1278 0/0:201,42:243:68.69:0,69,1539 0/1:176,74:250:99:243,0,736 0/0:197,0:198:99:0,120,1420 1 148579636 . T C 36.82 . AC=7;AF=0.083;AN=84;BaseQRankSum=5.903;DP=8777;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3837;InbreedingCoeff=-0.1631;MQ=5.48;MQ0=7810;MQRankSum=1.278;QD=0.02;ReadPosRankSum=-5.856 GT:AD:DP:GQ:PL 0/0:152,27:179:8.26:0,8,220 0/0:176,30:206:38.94:0,39,321 0/0:169,25:194:5.27:0,5,172 0/0:221,27:250:38.22:0,38,469 0/0:226,23:250:92.85:0,93,763 0/1:209,41:250:32.84:33,0,378 0/0:213,36:250:44.92:0,45,367 0/0:218,32:250:41.93:0,42,344 0/0:103,10:113:1.53:4,0,124 0/0:161,22:184:14.98:0,15,123 0/0:127,19:146:1.54:4,0,127 0/0:159,21:180:14.97:0,15,121 0/0:137,17:156:5.26:0,5,194 0/0:144,26:170:1.54:4,0,127 0/0:219,31:250:41.93:0,42,347 0/0:152,27:180:1.27:0,1,148 0/0:187,18:205:14.25:0,14,270 0/0:156,21:177:32.93:0,33,268 0/0:217,32:250:65.88:0,66,545 0/0:218,31:250:11.26:0,11,247 0/0:212,37:250:8.27:0,8,222 0/0:175,29:204:35.95:0,36,296 0/0:204,46:250:2.34:1,0,291 0/1:203,47:250:29.13:29,0,249 0/0:215,35:250:11.24:0,11,241 0/1:206,44:250:24.12:24,0,273 0/0:136,21:157:17.97:0,18,148 0/0:184,25:209:29.92:0,30,240 0/0:150,26:176:38.93:0,39,319 0/0:121,17:138:8.98:0,9,73 0/0:144,29:173:2.28:0,2,173 0/1:204,45:250:11.15:11,0,381 0/1:190,34:224:17.14:17,0,338 0/1:206,21:227:14.42:14,0,188 0/0:174,26:200:22.24:0,22,321 0/0:207,28:236:8.25:0,8,218 0/0:205,39:249:56.89:0,57,464 0/0:154,33:187:41.94:0,42,346 0/0:189,26:215:38.91:0,39,314 0/1:189,34:224:6.71:7,0,105 0/0:180,29:209:23.94:0,24,192 0/0:130,28:158:2.28:0,2,173 1 148741709 . T C 142.13 . AC=10;AF=0.278;AN=36;BaseQRankSum=2.869;DP=4854;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.2773;InbreedingCoeff=0.5762;MQ=6.99;MQ0=4592;MQRankSum=-4.361;QD=0.17;ReadPosRankSum=-1.573 GT:AD:DP:GQ:PL ./. 0/1:91,4:95:1.76:33,3,0 ./. 0/0:212,1:213:99:0,150,1684 0/0:218,1:219:99:0,244,2717 ./. 1/1:127,2:129:3.01:33,3,0 0/0:160,1:162:93.26:0,93,1048 0/0:71,1:72:57.16:0,57,634 0/0:90,1:91:42.12:0,42,470 ./. ./. ./. ./. ./. 0/0:60,1:62:3.01:0,3,33 ./. ./. ./. ./. 0/1:149,4:153:1.76:22,3,0 0/0:97,4:101:3.01:0,3,32 1/1:145,4:151:6.02:67,6,0 ./. ./. 0/0:141,1:144:3.01:0,3,33 ./. ./. ./. 0/0:95,0:95:48.13:0,48,533 0/0:119,2:122:53.81:0,54,926 ./. ./. ./. ./. 0/1:97,5:102:1.76:29,3,0 ./. ./. 0/0:103,1:104:3.01:0,3,34 ./. 0/1:84,2:86:1.76:22,3,0 1/1:103,2:106:3.01:33,3,0 1 148741720 . T C 7488.38 . AC=26;AF=0.684;AN=38;BaseQRankSum=9.693;DP=5735;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3678;InbreedingCoeff=0.5545;MQ=6.63;MQ0=5453;MQRankSum=-3.117;QD=3.62;ReadPosRankSum=1.724 GT:AD:DP:GQ:PL ./. 1/1:103,13:116:3.01:33,3,0 ./. 1/1:169,81:250:99:1809,159,0 1/1:134,108:242:99:2963,265,0 ./. 1/1:125,23:149:3.01:33,3,0 1/1:138,60:198:99:1220,108,0 1/1:54,30:84:57.16:640,57,0 1/1:87,31:119:54.15:612,54,0 ./. ./. ./. ./. 1/1:211,38:250:3.01:33,3,0 1/1:58,19:77:3.01:33,3,0 ./. ./. 0/0:149,36:186:3.01:0,3,33 ./. 1/1:167,23:191:2.98:22,3,0 1/1:105,22:127:3.01:33,3,0 0/0:151,42:194:6.02:0,6,67 ./. ./. 1/1:136,24:160:3.01:33,3,0 ./. ./. ./. 0/0:98,24:122:20.72:0,21,548 0/0:125,18:143:53.82:0,54,948 ./. ./. ./. ./. ./. ./. ./. 0/0:100,28:128:3.01:0,3,37 ./. 1/1:90,16:106:2.98:22,3,0 0/0:90,28:118:3.01:0,3,33 1 148751718 . G A 48.95 . AC=5;AF=0.83;AN=6;BaseQRankSum=-0.727;DP=6287;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=0.72;MQ0=6279;MQRankSum=0.727;QD=0.08;ReadPosRankSum=0.727 GT:AD:DP:GQ:PL ./. ./. ./. ./. ./. ./. ./. 0/1:163,1:164:23.61:24,0,24 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 1/1:210,1:211:3.01:33,3,0 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 1/1:239,1:240:3.01:30,3,0 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 1 148751738 . A G 24.52 . AC=1;AF=0.25;AN=4;BaseQRankSum=0.358;DP=6817;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=0.61;MQ0=6809;MQRankSum=-0.358;QD=0.12;ReadPosRankSum=1.231 GT:AD:DP:GQ:PL ./. ./. ./. ./. 0/0:184,8:192:3.01:0,3,33 ./. ./. 0/1:196,4:201:0.97:59,6,0 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 1 148752615 . C A 5.07 . AC=1;AF=0.50;AN=2;BaseQRankSum=0.804;DP=9435;DS;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=0.63;MQ0=9416;MQRankSum=0.804;QD=0.02;ReadPosRankSum=0.804 GT:AD:DP:GQ:PL ./. ./. ./. ./. ./. ./. 0/1:219,28:247:1.76:33,3,0 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 1 148754896 . T G 13.27 . AC=3;AF=0.214;AN=14;BaseQRankSum=1.502;DP=894;DS;Dels=0.00;FS=8.451;HRun=0;HaplotypeScore=2.0004;MQ=5.04;MQ0=525;MQRankSum=0.492;QD=0.26;ReadPosRankSum=-3.164 GT:AD:DP:GQ:PL ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0:34,0:34:3.01:0,3,32 ./. 0/0:45,0:45:3.01:0,3,30 1/1:33,2:35:3.01:30,3,0 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0:12,0:12:3.01:0,3,33 ./. 0/0:88,1:89:3.01:0,3,30 ./. 0/1:14,2:17:1.76:30,3,0 ./. ./. ./. ./. ./. ./. ./. 0/0:95,0:95:3:0,3,26 ./. ./. 1 148754899 . T C 11.14 . AC=3;AF=0.167;AN=18;BaseQRankSum=1.469;DP=1373;DS;Dels=0.00;FS=8.451;HRun=0;HaplotypeScore=1.9849;MQ=4.81;MQ0=910;MQRankSum=2.350;QD=0.11;ReadPosRankSum=-1.944 GT:AD:DP:GQ:PL ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0:44,0:44:3.01:0,3,37 ./. 0/0:52,0:53:3.01:0,3,30 1/1:68,1:69:3.01:30,3,0 0/0:23,0:23:2.98:0,3,22 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0:27,0:27:3:0,3,28 ./. 0/0:100,0:100:3:0,3,28 ./. 0/1:34,2:36:1.76:30,3,0 0/0:58,0:58:2.99:0,3,24 ./. ./. ./. ./. ./. ./. 0/0:103,0:103:3.01:0,3,31 ./. ./. 1 148754900 . A T 13.29 . AC=3;AF=0.214;AN=14;BaseQRankSum=1.252;DP=1774;DS;Dels=0.00;FS=3.979;HRun=2;HaplotypeScore=1.4193;MQ=4.47;MQ0=1257;MQRankSum=2.150;QD=0.09;ReadPosRankSum=-1.333 GT:AD:DP:GQ:PL ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0:51,0:51:3.01:0,3,35 ./. 0/0:59,0:59:3.01:0,3,30 1/1:99,2:101:3.01:30,3,0 0/0:42,0:42:2.98:0,3,22 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0:108,0:108:3:0,3,28 ./. 0/1:49,2:51:1.76:30,3,0 0/0:66,0:66:3:0,3,27 ./. ./. ./. ./. ./. ./. ./. ./. ./. 1 149762877 . G A 560.09 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.832;DP=5987;DS;Dels=0.00;FS=1.796;HRun=0;HaplotypeScore=0.8475;InbreedingCoeff=-0.0120;MQ=17.18;MQ0=2692;MQRankSum=0.754;QD=4.41;ReadPosRankSum=-0.104 GT:AD:DP:GQ:PL 0/0:111,0:111:99:0,147,1341 0/0:119,0:119:99:0,177,1622 0/0:115,0:115:99:0,135,1186 0/0:162,0:162:68.85:0,69,557 0/0:199,0:199:99:0,213,2016 0/0:237,0:237:99:0,273,2509 0/0:244,0:244:99:0,324,2947 0/0:210,0:210:99:0,291,2861 0/0:105,0:105:99:0,105,905 0/0:111,0:111:99:0,150,1366 0/0:83,0:83:89.92:0,90,798 0/0:125,0:125:99:0,168,1543 0/0:69,0:69:59.95:0,60,533 0/0:119,0:119:99:0,132,1175 0/0:248,0:248:99:0,339,3180 0/0:105,0:105:99:0,132,1158 0/0:131,0:131:99:0,132,1154 0/1:76,51:127:99:606,0,483 0/0:180,0:180:99:0,228,2179 0/0:154,0:154:99:0,216,2067 0/0:174,0:175:99:0,189,1724 0/0:77,0:77:68.96:0,69,638 0/0:157,0:157:71.82:0,72,574 0/0:236,0:236:99:0,294,2752 0/0:250,0:250:99:0,336,3113 0/0:234,0:234:99:0,240,2386 0/0:68,0:68:89.97:0,90,863 0/0:132,0:132:99:0,186,1695 0/0:112,0:112:99:0,153,1418 0/0:117,0:118:99:0,165,1514 0/0:124,0:124:99:0,129,1194 0/0:171,1:172:99:0,231,2146 0/0:112,0:112:99:0,153,1436 0/0:107,0:107:99:0,177,1610 0/0:100,0:100:99:0,144,1297 0/0:127,0:127:99:0,207,2014 0/0:145,0:146:99:0,204,1986 0/0:110,0:110:99:0,174,1555 0/0:119,0:119:99:0,138,1223 0/0:127,0:127:99:0,144,1306 0/0:107,0:107:99:0,135,1224 0/0:123,0:123:99:0,141,1361 1 149878329 . G A 721.40 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.518;DP=2953;Dels=0.00;FS=7.189;HRun=0;HaplotypeScore=1.2253;InbreedingCoeff=-0.0120;MQ=59.22;MQ0=0;MQRankSum=0.958;QD=11.45;ReadPosRankSum=0.184 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,162,1929 0/0:70,0:70:99:0,193,2286 0/0:51,0:51:99:0,144,1683 0/0:117,1:118:99:0,287,4011 0/0:114,0:114:99:0,295,3868 0/0:85,0:86:99:0,232,2990 0/1:33,30:63:99:768,0,998 0/0:83,0:83:99:0,223,2831 0/0:48,0:48:99:0,135,1573 0/0:48,0:48:99:0,138,1598 0/0:52,0:52:99:0,141,1687 0/0:58,0:58:99:0,162,1913 0/0:52,0:52:99:0,141,1625 0/0:51,0:51:99:0,144,1681 0/0:195,0:195:99:0,508,6099 0/0:74,1:75:99:0,208,2445 0/0:55,0:55:99:0,159,1839 0/0:48,0:48:99:0,141,1626 0/0:97,0:97:99:0,268,3106 0/0:86,0:86:99:0,238,2791 0/0:88,0:89:99:0,229,2685 0/0:63,0:63:99:0,171,2032 0/0:128,0:128:99:0,328,4299 0/0:73,0:73:99:0,175,2284 0/0:61,0:61:99:0,172,2235 0/0:75,0:75:99:0,199,2517 0/0:43,0:43:99:0,117,1391 0/0:54,1:55:99:0,156,1856 0/0:59,0:59:99:0,162,1942 0/0:62,0:62:99:0,153,1829 0/0:40,0:42:99:0,114,1350 0/0:82,0:82:99:0,223,2603 0/0:69,0:69:99:0,187,2193 0/0:49,0:49:99:0,138,1647 0/0:54,0:54:99:0,150,1748 0/0:58,0:58:99:0,159,1919 0/0:90,0:91:99:0,238,2768 0/0:57,0:57:99:0,159,1815 0/0:58,0:58:99:0,171,2019 0/0:61,0:61:99:0,168,1959 0/0:48,0:48:99:0,129,1508 0/0:68,0:68:99:0,196,2278 1 149878407 . G A 2341.43 . AC=4;AF=0.048;AN=84;BaseQRankSum=-4.966;DP=1426;Dels=0.00;FS=6.201;HRun=0;HaplotypeScore=0.9874;InbreedingCoeff=-0.0500;MQ=59.34;MQ0=0;MQRankSum=1.460;QD=15.20;ReadPosRankSum=1.595 GT:AD:DP:GQ:PL 0/0:32,0:32:84.26:0,84,1022 0/0:24,0:24:69.21:0,69,842 0/0:24,0:24:60.19:0,60,750 0/1:19,30:50:99:886,0,514 0/0:59,0:59:99:0,178,2269 0/1:18,18:36:99:503,0,596 0/1:11,13:24:99:405,0,344 0/0:42,0:42:99:0,123,1561 0/0:29,0:30:81.25:0,81,983 0/0:33,0:33:96.28:0,96,1143 0/0:24,0:24:63.19:0,63,777 0/0:32,0:33:93.27:0,93,1133 0/0:22,0:22:63.19:0,63,771 0/0:17,0:17:48.15:0,48,593 0/0:81,0:83:99:0,211,2589 0/0:31,0:31:84.24:0,84,1021 0/0:30,0:30:87.27:0,87,1070 0/0:22,0:22:63.18:0,63,753 0/0:47,0:47:99:0,129,1506 0/0:51,0:51:99:0,150,1812 0/0:41,0:41:99:0,117,1397 0/0:34,0:34:90.27:0,90,1090 0/1:22,22:44:99:634,0,709 0/0:35,0:35:96.31:0,96,1277 0/0:26,0:26:69.20:0,69,897 0/0:30,0:30:84.27:0,84,1095 0/0:18,0:18:54.17:0,54,666 0/0:26,0:26:72.22:0,72,883 0/0:32,0:32:87.24:0,87,1048 0/0:28,0:28:78.23:0,78,934 0/0:20,0:20:57.17:0,57,694 0/0:38,0:39:99:0,99,1204 0/0:39,0:39:99:0,111,1348 0/0:34,0:34:96.29:0,96,1172 0/0:29,0:29:81.25:0,81,990 0/0:28,0:28:81.25:0,81,999 0/0:66,0:66:99:0,171,2031 0/0:27,0:27:78.23:0,78,933 0/0:22,0:23:57.18:0,57,727 0/0:33,0:33:93.29:0,93,1141 0/0:25,0:25:69.21:0,69,842 0/0:34,1:35:68.67:0,69,1120 1 149920922 . C A 2708.78 . AC=2;AF=0.024;AN=84;BaseQRankSum=-12.182;DP=3066;Dels=0.00;FS=3.190;HRun=0;HaplotypeScore=1.4759;InbreedingCoeff=-0.0244;MQ=59.40;MQ0=0;MQRankSum=-0.893;QD=11.53;ReadPosRankSum=1.357 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,144,1831 0/0:56,0:56:99:0,147,1918 0/0:50,0:50:99:0,135,1706 0/0:101,0:101:99:0,262,3525 0/0:72,0:72:99:0,199,2704 0/0:89,0:89:99:0,229,3064 0/0:60,0:60:99:0,153,2090 0/0:88,0:88:99:0,226,3042 0/0:56,0:56:99:0,156,1985 0/0:52,0:52:99:0,132,1688 0/0:44,0:44:99:0,126,1606 0/0:56,0:56:99:0,138,1777 0/0:53,0:53:99:0,138,1781 0/0:48,0:48:99:0,132,1705 0/0:206,0:207:99:0,506,6468 0/0:54,0:54:99:0,138,1792 0/0:53,0:54:99:0,147,1835 0/0:51,0:51:99:0,144,1852 0/1:60,43:103:99:1061,0,1766 0/1:68,64:132:99:1711,0,1836 0/0:115,1:116:99:0,281,3752 0/0:67,0:67:99:0,190,2393 0/0:128,0:128:99:0,322,4361 0/0:74,0:74:99:0,184,2509 0/0:86,0:86:99:0,211,2869 0/0:67,0:67:99:0,172,2311 0/0:45,0:45:99:0,123,1536 0/0:55,0:55:99:0,153,1985 0/0:52,0:52:99:0,132,1703 0/0:55,0:55:99:0,129,1680 0/0:45,0:45:99:0,123,1574 0/0:128,1:129:99:0,331,4258 0/0:71,0:71:99:0,196,2474 0/0:69,0:69:99:0,184,2323 0/0:51,0:51:99:0,141,1783 0/0:64,0:64:99:0,169,2151 0/0:124,0:125:99:0,340,4188 0/0:52,0:52:99:0,147,1854 0/0:59,0:59:99:0,162,2065 0/0:56,0:56:99:0,156,1958 0/0:47,0:47:99:0,132,1700 0/0:71,0:71:99:0,184,2379 1 150280546 . C T 1651.75 . AC=3;AF=0.036;AN=84;BaseQRankSum=4.687;DP=1603;Dels=0.00;FS=8.030;HRun=0;HaplotypeScore=3.9068;InbreedingCoeff=-0.0370;MQ=58.70;MQ0=0;MQRankSum=-0.395;QD=15.29;ReadPosRankSum=0.723 GT:AD:DP:GQ:PL 0/1:10,19:29:99:504,0,262 0/0:28,0:28:72.20:0,72,829 0/0:20,0:20:54.14:0,54,597 0/0:68,0:68:99:0,187,2283 0/0:57,0:57:99:0,165,1988 0/0:45,0:45:99:0,123,1531 0/0:31,0:31:78.23:0,78,949 0/0:42,0:42:99:0,117,1390 0/0:48,0:48:99:0,132,1501 0/0:22,0:22:60.15:0,60,653 0/0:33,0:33:96.27:0,96,1117 0/0:35,0:35:99:0,102,1137 0/0:33,0:33:93.23:0,93,1020 0/0:36,0:36:99:0,99,1129 0/0:96,0:99:99:0,259,2867 0/0:25,0:25:75.19:0,75,830 0/0:32,0:32:93.23:0,93,1011 0/0:27,0:28:81.21:0,81,903 0/0:35,0:35:96.25:0,96,1057 0/0:48,0:48:99:0,120,1411 0/1:16,26:42:99:661,0,379 0/1:18,19:37:99:563,0,494 0/0:77,0:77:99:0,214,2578 0/0:40,0:40:99:0,111,1354 0/0:43,0:43:99:0,126,1519 0/0:38,0:38:99:0,108,1277 0/0:28,0:28:84.20:0,84,914 0/0:30,0:30:87.20:0,87,955 0/0:32,0:32:90.24:0,90,1009 0/0:31,0:31:90.24:0,90,1017 0/0:24,0:24:72.19:0,72,804 0/0:48,1:49:97.54:0,98,1451 0/0:32,0:32:96.23:0,96,1048 0/0:35,0:35:99:0,99,1111 0/0:26,0:26:72.19:0,72,812 0/0:42,0:42:99:0,117,1333 0/0:34,0:34:93.24:0,93,1049 0/0:39,0:39:99:0,114,1289 0/0:27,0:27:78.20:0,78,870 0/0:29,0:29:78.21:0,78,896 0/0:30,0:30:87.23:0,87,972 0/0:44,0:44:99:0,132,1467 1 150280550 . G A 1791.41 . AC=3;AF=0.036;AN=84;BaseQRankSum=-0.798;DP=1685;Dels=0.00;FS=7.659;HRun=0;HaplotypeScore=2.2871;InbreedingCoeff=-0.0370;MQ=58.76;MQ0=0;MQRankSum=0.943;QD=16.29;ReadPosRankSum=1.294 GT:AD:DP:GQ:PL 0/0:27,0:27:72.16:0,72,803 0/0:30,0:30:81.23:0,81,964 0/0:19,0:19:54.17:0,54,669 0/0:73,0:73:99:0,211,2538 0/0:63,0:63:99:0,184,2341 0/0:46,0:46:99:0,126,1623 0/0:34,0:34:87.27:0,87,1114 0/0:40,0:41:99:0,117,1477 0/1:18,27:45:99:817,0,501 0/0:23,0:23:63.16:0,63,732 0/1:17,17:34:99:488,0,472 0/0:36,0:36:99:0,102,1194 0/0:34,0:35:99:0,102,1193 0/0:39,0:40:99:0,108,1224 0/0:103,0:103:99:0,274,3213 0/0:25,0:25:72.19:0,72,823 0/0:33,0:33:93.28:0,93,1118 0/0:29,0:30:87.24:0,87,1007 0/0:38,0:38:99:0,111,1295 0/0:49,0:49:99:0,132,1578 0/0:42,0:42:99:0,111,1268 0/0:38,0:38:99:0,111,1252 0/0:83,0:84:99:0,241,2992 0/0:41,0:41:99:0,108,1375 0/0:51,0:51:99:0,135,1694 0/0:39,0:39:99:0,117,1435 0/0:31,0:31:81.19:0,81,928 0/0:35,0:35:99:0,99,1121 0/0:39,0:39:99:0,111,1301 0/0:33,0:33:93.26:0,93,1095 0/0:25,0:25:69.20:0,69,817 0/0:52,0:52:99:0,135,1590 0/1:12,19:31:99:562,0,280 0/0:36,0:36:99:0,102,1199 0/0:24,0:24:63.18:0,63,735 0/0:43,0:43:99:0,114,1354 0/0:35,0:36:96.26:0,96,1115 0/0:42,0:42:99:0,117,1361 0/0:29,0:29:78.19:0,78,897 0/0:33,0:33:93.25:0,93,1093 0/0:33,0:33:90.23:0,90,1055 0/0:44,0:44:99:0,123,1397 1 150280621 . T G 2278.72 . AC=4;AF=0.048;AN=84;BaseQRankSum=-2.995;DP=1841;Dels=0.00;FS=14.716;HRun=0;HaplotypeScore=1.1472;InbreedingCoeff=-0.0500;MQ=58.67;MQ0=2;MQRankSum=-0.439;QD=11.93;ReadPosRankSum=0.942 GT:AD:DP:GQ:PL 0/0:26,0:26:69.21:0,69,847 0/0:23,0:23:69.19:0,69,811 0/0:38,0:38:96.29:0,96,1179 0/0:93,0:93:99:0,250,3081 0/0:69,0:69:99:0,193,2424 0/0:51,0:51:99:0,138,1788 0/0:50,0:50:99:0,135,1770 0/0:66,0:66:99:0,172,2187 0/0:42,0:42:99:0,120,1453 0/0:31,0:31:87.26:0,87,1047 0/0:29,0:29:81.25:0,81,997 0/0:36,0:36:99:0,105,1299 0/0:25,0:25:72.23:0,72,896 0/0:41,0:41:99:0,117,1428 0/0:105,0:105:99:0,307,3698 0/0:26,0:26:75.23:0,75,919 0/0:38,0:38:99:0,105,1287 0/0:27,0:27:75.23:0,75,907 0/0:49,0:49:99:0,132,1672 0/0:69,0:70:99:0,190,2352 0/1:29,23:52:99:642,0,825 0/0:34,0:34:96.30:0,96,1192 0/0:81,0:81:99:0,217,2716 0/1:27,17:45:99:504,0,836 0/0:54,1:55:99:0,144,1861 0/1:22,28:50:99:804,0,654 0/0:30,0:30:90.23:0,90,1073 0/0:35,0:35:99:0,102,1253 0/0:44,0:44:99:0,126,1558 0/0:32,0:32:93.28:0,93,1129 0/0:34,0:34:90.27:0,90,1110 0/1:27,17:44:99:415,0,846 0/0:34,0:34:93.27:0,93,1134 0/0:39,0:39:99:0,105,1310 0/0:39,0:39:99:0,108,1321 0/0:45,0:45:99:0,120,1490 0/0:40,0:40:99:0,108,1343 0/0:35,0:35:99:0,102,1251 0/0:26,0:26:72.19:0,72,866 0/0:29,0:29:84.24:0,84,1012 0/0:36,0:36:99:0,102,1267 0/0:47,0:47:99:0,129,1596 1 150429944 . A G 40771.76 . AC=14;AF=0.167;AN=84;BaseQRankSum=-13.572;DP=8146;DS;Dels=0.00;FS=7.315;HRun=0;HaplotypeScore=3.6307;InbreedingCoeff=0.1429;MQ=59.56;MQ0=0;MQRankSum=1.107;QD=17.33;ReadPosRankSum=2.249 GT:AD:DP:GQ:PL 0/0:159,0:159:99:0,460,5527 0/0:168,0:168:99:0,466,5624 0/0:154,1:155:99:0,416,5278 1/1:0,236:236:99:8469,692,0 0/1:125,119:244:99:3542,0,3710 0/0:249,0:249:99:0,722,8999 0/0:243,0:243:99:0,701,8730 0/0:221,0:221:99:0,620,7630 0/0:177,1:178:99:0,506,6076 0/1:66,72:138:99:1875,0,1885 0/0:149,0:149:99:0,430,5157 0/0:171,0:171:99:0,484,5873 0/1:75,58:133:99:1397,0,2106 0/0:164,0:164:99:0,475,5752 0/0:250,0:250:99:0,707,8401 0/1:84,62:146:99:1566,0,2301 0/0:186,1:187:99:0,503,6391 0/0:157,0:157:99:0,445,5366 0/0:250,0:250:99:0,671,8201 0/0:250,0:250:99:0,701,8529 0/0:248,0:249:99:0,692,8412 0/0:196,0:196:99:0,545,6544 1/1:2,246:248:99:8834,647,0 0/0:230,0:230:99:0,653,8032 0/0:248,0:248:99:0,722,8768 0/0:231,0:231:99:0,647,7904 0/0:104,0:104:99:0,304,3667 0/0:159,0:159:99:0,460,5526 0/0:146,0:146:99:0,412,4989 0/0:178,0:178:99:0,521,6273 0/0:155,0:155:99:0,445,5450 0/1:132,117:250:99:2966,0,3884 0/0:219,0:219:99:0,611,7359 0/0:194,0:194:99:0,551,6703 0/0:167,1:168:99:0,460,5862 0/0:212,0:212:99:0,578,7034 0/1:122,128:250:99:3321,0,3453 0/1:97,81:179:99:2111,0,2754 0/1:81,80:161:99:2115,0,2363 0/1:96,85:181:99:2285,0,2846 0/0:154,0:154:99:0,451,5370 0/1:99,86:185:99:2292,0,2792 1 150482145 . G A 3172.55 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.323;DP=5340;DS;Dels=0.00;FS=3.445;HRun=0;HaplotypeScore=3.3376;InbreedingCoeff=-0.0244;MQ=59.08;MQ0=0;MQRankSum=1.514;QD=16.19;ReadPosRankSum=-1.346 GT:AD:DP:GQ:PL 0/1:52,57:109:99:1477,0,1319 0/0:86,0:86:99:0,238,2733 0/0:58,0:58:99:0,165,1939 0/0:247,0:247:99:0,638,7766 0/0:248,0:248:99:0,659,8254 0/0:163,0:166:99:0,415,5245 0/0:142,0:142:99:0,361,4511 0/0:178,0:178:99:0,472,5906 0/0:62,0:62:99:0,178,2099 0/0:79,0:79:99:0,208,2464 0/0:87,0:87:99:0,250,2862 0/0:85,0:85:99:0,226,2625 0/0:69,0:70:99:0,186,2087 0/0:86,1:87:99:0,211,2732 0/0:248,0:249:99:0,653,7580 0/0:83,1:84:99:0,216,2616 0/0:76,0:76:99:0,208,2344 0/0:72,0:72:99:0,201,2324 0/0:203,0:203:99:0,526,6108 0/0:213,1:216:99:0,510,6358 0/0:207,0:208:99:0,547,6377 0/0:138,0:139:99:0,370,4298 0/0:247,0:247:99:0,662,8236 0/0:152,0:153:99:0,400,5049 0/0:206,0:206:99:0,521,6477 0/0:165,0:165:99:0,394,5026 0/0:74,0:74:99:0,199,2321 0/0:81,0:81:99:0,235,2650 0/0:72,0:72:99:0,183,2112 0/0:96,0:96:99:0,256,3018 0/0:76,0:76:99:0,208,2408 0/0:205,1:206:99:0,501,6325 0/0:129,0:129:99:0,337,4026 0/0:82,0:82:99:0,220,2550 0/0:90,0:90:99:0,244,2752 0/1:28,59:87:99:1758,0,627 0/0:179,1:180:99:0,436,5265 0/0:102,0:102:99:0,271,3118 0/0:72,0:72:99:0,205,2349 0/0:101,0:102:99:0,262,3025 0/0:75,0:75:99:0,208,2411 0/0:94,0:94:99:0,256,3045 1 150524786 . T G 431.37 . AC=24;AF=0.286;AN=84;BaseQRankSum=-8.695;DP=257;Dels=0.01;FS=178.771;HRun=2;HaplotypeScore=0.8976;InbreedingCoeff=-0.1702;MQ=58.38;MQ0=0;MQRankSum=-1.491;QD=3.06;ReadPosRankSum=-6.854 GT:AD:DP:GQ:PL 0/1:4,3:7:6.64:7,0,129 0/1:7,3:10:1.62:2,0,233 0/1:3,2:5:43.19:43,0,94 0/0:4,7:11:11.25:0,11,110 0/0:3,5:8:9.03:0,9,114 0/0:3,2:5:9.03:0,9,113 0/0:4,5:9:12.04:0,12,151 0/1:3,4:7:36.31:43,0,36 0/0:2,0:2:6.02:0,6,67 0/1:1,1:2:25.53:26,0,32 0/1:2,6:8:31.08:50,0,31 0/1:1,3:4:0.97:21,0,1 1/1:0,2:2:3:28,3,0 0/1:5,4:9:10.65:11,0,133 0/1:15,6:21:29.20:29,0,355 0/0:2,2:4:6.02:0,6,70 0/0:6,2:8:14.26:0,14,150 0/0:1,1:2:3.01:0,3,37 0/0:4,1:5:9.02:0,9,100 0/0:5,4:9:12.04:0,12,142 0/1:4,3:7:24.96:25,0,136 1/1:0,5:5:6:57,6,0 0/0:3,1:4:9.03:0,9,113 0/0:2,3:5:6.02:0,6,71 0/0:5,6:11:15.03:0,15,177 0/0:2,0:2:6.01:0,6,63 0/1:2,3:5:20.60:21,0,65 0/0:2,0:2:3.01:0,3,37 0/0:3,2:5:9.03:0,9,115 1/1:0,4:4:3.01:36,3,0 0/0:1,1:2:3.01:0,3,36 0/1:5,6:11:17.48:17,0,119 0/0:1,0:3:3.01:0,3,38 0/1:3,2:5:20.60:21,0,57 0/1:2,3:5:40.29:40,0,59 0/1:4,4:8:34.30:34,0,123 0/0:1,2:3:3.01:0,3,38 0/0:7,0:7:18.05:0,18,213 0/1:1,4:5:24.58:25,0,29 0/0:2,4:6:6.02:0,6,71 0/1:4,2:6:11.64:12,0,126 0/1:2,2:5:48.92:49,0,53 1 150529804 . C T 179.09 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.852;DP=675;Dels=0.00;FS=6.587;HRun=0;HaplotypeScore=0.7515;InbreedingCoeff=-0.0261;MQ=58.89;MQ0=0;MQRankSum=1.244;QD=5.97;ReadPosRankSum=-0.223 GT:AD:DP:GQ:PL 0/0:14,0:14:39.10:0,39,450 0/0:15,0:15:42.12:0,42,488 0/0:8,0:8:21.05:0,21,245 0/0:26,0:26:72.20:0,72,854 0/0:27,0:27:78.22:0,78,934 0/0:16,0:16:42.11:0,42,512 0/0:14,0:14:42.11:0,42,489 0/0:9,0:9:24.07:0,24,281 0/0:11,0:11:27.07:0,27,329 0/0:19,0:19:48.14:0,48,589 0/0:17,0:17:51.13:0,51,574 0/0:12,0:12:27.08:0,27,323 0/0:10,0:10:21.06:0,21,266 0/0:16,0:16:36.08:0,36,425 0/0:52,0:52:99:0,132,1556 0/0:16,0:16:48.12:0,48,530 0/0:11,0:11:27.08:0,27,329 0/0:7,0:7:15.04:0,15,172 0/0:24,0:24:66.18:0,66,771 0/0:18,0:18:54.16:0,54,638 0/0:17,1:18:13.36:0,13,552 0/0:17,0:17:48.11:0,48,553 0/0:17,0:17:48.15:0,48,593 0/0:13,0:13:33.10:0,33,404 0/0:15,0:15:42.13:0,42,522 0/0:10,0:11:30.09:0,30,364 0/0:6,0:6:18.05:0,18,202 0/0:27,0:27:78.21:0,78,891 0/0:18,0:18:42.13:0,42,521 0/1:13,3:16:62.72:63,0,343 0/1:7,7:14:99:179,0,132 0/0:21,0:21:54.15:0,54,635 0/0:14,0:14:42.12:0,42,478 0/0:13,0:13:39.11:0,39,449 0/0:12,0:12:24.07:0,24,305 0/0:13,0:13:36.08:0,36,402 0/0:23,0:23:57.13:0,57,662 0/0:11,0:11:33.09:0,33,382 0/0:13,0:13:33.09:0,33,374 0/0:12,0:12:30.08:0,30,347 0/0:7,0:7:18.04:0,18,195 0/0:21,0:22:57.16:0,57,677 1 150530043 . G A 6.86 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.520;DP=398;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4751;InbreedingCoeff=-0.0216;MQ=58.74;MQ0=0;MQRankSum=0.320;QD=0.98;ReadPosRankSum=-0.339 GT:AD:DP:GQ:PL 0/0:6,0:6:12.01:0,12,130 0/0:12,0:12:33.09:0,33,376 0/0:4,0:4:12.03:0,12,133 0/0:14,0:14:39.10:0,39,449 0/0:7,0:7:21.07:0,21,259 0/0:8,0:8:24.07:0,24,288 0/0:9,0:9:27.08:0,27,330 0/0:7,0:7:21.06:0,21,261 0/0:5,0:5:12.04:0,12,154 0/0:8,0:8:21.06:0,21,240 0/0:9,0:9:24.06:0,24,267 0/0:4,0:4:12.03:0,12,141 0/0:7,0:7:21.05:0,21,235 0/0:2,0:2:6.02:0,6,71 0/0:34,0:35:90.23:0,90,1060 0/0:6,0:6:15.03:0,15,165 0/0:8,0:8:21.04:0,21,237 0/0:6,0:7:18.03:0,18,183 0/0:11,0:11:30.08:0,30,348 0/0:20,0:20:57.14:0,57,655 0/0:13,0:13:36.10:0,36,423 0/0:6,0:6:18.03:0,18,195 0/0:17,0:17:45.09:0,45,545 0/0:8,0:8:21.05:0,21,241 0/0:13,0:13:36.10:0,36,428 0/0:8,0:8:21.06:0,21,256 0/0:4,0:4:12.04:0,12,148 0/0:14,0:14:42.12:0,42,492 0/0:9,0:9:27.08:0,27,328 0/0:6,0:6:18.05:0,18,212 0/0:10,0:10:30.08:0,30,340 0/0:16,0:16:42.13:0,42,512 0/0:10,0:10:30.08:0,30,354 0/0:7,0:7:21.06:0,21,249 0/1:5,2:7:51.99:52,0,158 0/0:11,0:11:30.06:0,30,328 0/0:9,0:10:24.07:0,24,275 0/0:4,0:4:12.03:0,12,140 0/0:9,0:9:27.08:0,27,308 0/0:11,0:11:30.08:0,30,340 0/0:5,0:5:12.03:0,12,151 0/0:11,0:11:33.09:0,33,366 1 150531008 . T C 56647.09 . AC=80;AF=0.952;AN=84;BaseQRankSum=-3.507;DP=1977;Dels=0.00;FS=0.741;HRun=0;HaplotypeScore=1.8559;InbreedingCoeff=-0.0500;MQ=58.15;MQ0=0;MQRankSum=-1.000;QD=28.65;ReadPosRankSum=0.311 GT:AD:DP:GQ:PL 1/1:0,29:29:81.22:914,81,0 1/1:0,41:42:99:1214,108,0 1/1:0,23:23:60.17:709,60,0 1/1:0,112:112:99:3615,295,0 1/1:0,97:97:99:3080,247,0 0/1:45,32:77:99:807,0,1334 1/1:1,64:65:99:2188,143,0 0/1:39,40:79:99:993,0,1063 1/1:0,31:31:84.22:988,84,0 1/1:0,22:22:51.14:587,51,0 1/1:0,31:31:93.23:1038,93,0 0/1:12,19:31:99:518,0,302 0/1:15,11:26:99:268,0,435 1/1:0,23:23:60.14:684,60,0 1/1:0,120:120:99:3472,316,0 1/1:0,41:41:99:1244,111,0 1/1:0,19:19:51.14:599,51,0 1/1:0,25:25:63.16:694,63,0 1/1:0,46:46:99:1384,126,0 1/1:0,64:66:99:1893,159,0 1/1:0,62:62:99:1846,162,0 1/1:0,50:50:99:1539,132,0 1/1:0,117:119:99:3696,304,0 1/1:0,68:68:99:2173,175,0 1/1:0,76:76:99:2428,196,0 1/1:0,57:57:99:1827,144,0 1/1:0,27:27:75.18:848,75,0 1/1:0,26:27:72.17:799,72,0 1/1:0,21:22:63.17:715,63,0 1/1:0,30:30:81.22:934,81,0 1/1:0,32:32:84.23:958,84,0 1/1:0,60:60:99:1688,147,0 1/1:0,47:48:99:1393,123,0 1/1:0,27:27:75.17:817,75,0 1/1:0,31:31:84.24:970,84,0 1/1:0,35:35:96.27:1103,96,0 1/1:0,57:58:99:1664,147,0 1/1:0,24:24:60.16:686,60,0 1/1:0,36:36:96.27:1120,96,0 1/1:0,30:31:81.23:929,81,0 1/1:0,28:28:75.19:844,75,0 1/1:0,24:24:66.19:781,66,0 1 150531050 . G A 57238.88 . AC=75;AF=0.893;AN=84;BaseQRankSum=-5.829;DP=2219;Dels=0.00;FS=1.274;HRun=0;HaplotypeScore=1.5387;InbreedingCoeff=-0.1200;MQ=58.23;MQ0=0;MQRankSum=-0.773;QD=25.79;ReadPosRankSum=-0.651 GT:AD:DP:GQ:PL 0/1:18,12:31:99:319,0,517 0/1:25,19:44:99:543,0,634 1/1:0,20:20:57.13:637,57,0 1/1:0,136:139:99:4129,349,0 1/1:0,106:107:99:3203,271,0 0/1:53,40:93:99:1071,0,1559 1/1:1,64:67:99:2012,141,0 0/1:49,42:91:99:1017,0,1442 1/1:0,40:40:99:1170,102,0 1/1:0,27:27:75.20:862,75,0 1/1:0,37:37:99:1220,105,0 1/1:0,38:38:99:1249,105,0 1/1:0,18:18:48.13:566,48,0 1/1:0,32:33:81.23:979,81,0 1/1:1,127:129:99:3855,337,0 1/1:0,41:41:99:1322,111,0 1/1:0,27:27:78.21:901,78,0 1/1:0,34:34:96.28:1140,96,0 1/1:0,54:58:99:1667,147,0 1/1:0,51:53:99:1441,123,0 0/1:24,39:65:99:960,0,516 0/1:18,25:44:99:675,0,353 1/1:0,147:147:99:4522,385,0 0/1:42,40:82:99:1022,0,1142 1/1:0,84:84:99:2593,217,0 0/1:28,33:61:99:805,0,759 1/1:0,25:25:63.17:739,63,0 1/1:0,33:33:93.27:1104,93,0 1/1:0,31:32:84.23:995,84,0 1/1:0,37:37:99:1141,99,0 1/1:0,37:37:99:1158,105,0 0/1:40,18:59:99:416,0,980 1/1:0,51:51:99:1516,129,0 1/1:0,33:33:96.22:1070,96,0 1/1:0,33:34:87.23:1006,87,0 1/1:0,29:30:78.23:940,78,0 1/1:0,59:61:99:1804,153,0 1/1:0,37:38:96.25:1121,96,0 1/1:0,35:36:93.20:1043,93,0 1/1:0,35:36:99:1168,102,0 1/1:0,35:35:96.28:1130,96,0 1/1:0,32:32:84.25:1006,84,0 1 150531137 . A C 1254.50 . AC=22;AF=0.262;AN=84;BaseQRankSum=-10.418;DP=1226;Dels=0.01;FS=578.752;HRun=5;HaplotypeScore=1.6130;InbreedingCoeff=-0.3694;MQ=58.03;MQ0=0;MQRankSum=-0.578;QD=2.06;ReadPosRankSum=-11.668 GT:AD:DP:GQ:PL 0/1:13,11:24:95.31:95,0,417 0/0:12,9:21:8.24:0,8,346 0/0:17,3:20:42.10:0,42,494 0/0:38,31:69:80.43:0,80,1180 0/1:19,28:47:99:235,0,604 0/0:20,8:28:51.16:0,51,630 0/1:20,14:34:12.06:12,0,652 0/0:20,24:44:60.18:0,60,727 0/1:12,18:30:79.11:79,0,292 0/1:10,9:19:87.56:88,0,294 0/1:6,4:10:8.57:9,0,190 0/1:16,15:31:99:164,0,480 0/1:11,12:23:74.97:75,0,357 0/1:14,9:23:16.86:17,0,445 0/0:47,38:85:32.12:0,32,1470 0/1:14,11:25:84.92:85,0,439 0/0:18,2:20:48.15:0,48,580 0/1:13,9:22:99:129,0,312 0/0:30,10:40:43.11:0,43,896 0/1:18,9:27:15.20:15,0,536 0/0:22,2:25:66.19:0,66,799 0/1:12,12:24:99:104,0,371 0/1:31,31:64:34.53:35,0,907 0/0:17,5:22:42.12:0,42,505 0/1:16,25:41:7.43:7,0,503 0/0:18,17:35:20.70:0,21,553 0/0:11,9:21:32.44:0,32,356 0/1:10,5:15:20.20:20,0,337 0/1:7,12:19:95.93:96,0,213 0/1:13,9:22:20.64:21,0,402 0/0:11,8:19:5.96:0,6,323 0/1:21,18:39:35.54:36,0,626 0/1:10,10:20:50.80:51,0,297 0/0:15,9:24:4.43:0,4,425 0/1:13,8:21:24.42:24,0,433 0/0:16,9:25:2.78:0,3,529 0/1:15,14:29:28.52:29,0,390 0/0:21,14:35:25.42:0,25,670 0/0:15,8:23:10.27:0,10,433 0/0:16,3:19:42.13:0,42,513 0/0:13,5:18:16.44:0,16,447 0/0:11,4:15:31.91:0,32,364 1 150531137 . A AC 2303.32 . AC=38;AF=0.452;AN=84;BaseQRankSum=13.130;DP=1360;FS=862.342;HRun=5;HaplotypeScore=185.3005;InbreedingCoeff=-0.8131;MQ=57.25;MQ0=0;MQRankSum=-1.604;QD=1.85;ReadPosRankSum=-19.338 GT:AD:DP:GQ:PL 0/1:25,0:25:85.08:85,0,267 0/1:21,0:21:46.54:47,0,253 0/1:16,10:26:69.57:70,0,328 0/1:70,0:70:82.76:83,0,655 0/1:52,0:52:99:249,0,317 0/1:27,13:40:47.49:47,0,285 0/1:36,0:35:17.53:18,0,395 0/0:44,0:43:44.36:0,44,438 0/1:32,0:32:99:139,0,271 0/1:20,0:20:95.43:95,0,217 0/1:12,0:12:3.82:4,0,169 0/1:32,0:32:99:168,0,296 0/1:23,0:23:49.30:49,0,258 0/1:22,0:22:18.47:18,0,306 0/1:97,0:97:99:100,0,1152 0/1:25,0:25:68.72:69,0,350 0/1:17,9:26:58.31:58,0,339 0/1:24,0:24:99:114,0,189 0/1:48,0:48:68.14:68,0,720 0/1:30,0:30:60.65:61,0,331 0/1:43,0:43:99:102,0,450 0/1:27,0:27:99:120,0,272 0/1:67,1:68:37.59:38,0,577 0/1:19,13:32:90.92:91,0,316 0/1:42,0:40:29.39:29,0,429 0/1:37,0:36:17.82:18,0,351 0/1:21,0:21:0.88:1,0,230 0/1:17,0:17:11.40:11,0,252 0/1:20,0:20:79.86:80,0,155 0/1:25,0:25:53.47:53,0,246 0/1:18,0:18:29.30:29,0,168 0/1:45,0:45:54.06:54,0,540 0/1:20,0:20:42.53:43,0,223 0/1:27,0:27:17.80:18,0,397 0/1:24,0:24:46.53:47,0,313 0/1:28,0:28:36.58:37,0,275 0/1:36,0:36:99:141,0,349 0/0:35,0:34:2.91:0,0,548 0/1:26,0:26:16.93:17,0,318 0/1:20,6:26:3.96:4,0,297 0/0:21,0:21:10.71:0,11,322 0/0:17,0:17:4.42:0,4,294 1 150531170 . C T 40396.43 . AC=83;AF=0.988;AN=84;BaseQRankSum=-0.334;DP=1230;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.3652;InbreedingCoeff=-0.0121;MQ=58.77;MQ0=0;MQRankSum=-0.893;QD=32.84;ReadPosRankSum=-0.886 GT:AD:DP:GQ:PL 1/1:0,23:23:63.19:760,63,0 1/1:0,26:26:75.20:900,75,0 1/1:0,20:21:54.17:657,54,0 1/1:0,48:48:99:1639,135,0 1/1:0,46:46:99:1665,135,0 1/1:0,34:34:99:1228,99,0 0/1:14,12:26:99:358,0,341 1/1:0,37:37:99:1218,99,0 1/1:0,31:31:93.25:1096,93,0 1/1:0,17:17:42.13:524,42,0 1/1:1,15:16:45.14:542,45,0 1/1:0,28:28:81.25:992,81,0 1/1:0,18:18:42.13:541,42,0 1/1:0,23:23:60.19:759,60,0 1/1:0,107:107:99:3317,271,0 1/1:0,25:25:69.21:837,69,0 1/1:0,26:26:72.22:871,72,0 1/1:0,19:19:57.15:658,57,0 1/1:0,40:40:99:1309,108,0 1/1:0,33:33:78.24:978,78,0 1/1:0,39:39:99:1360,111,0 1/1:0,23:23:66.17:780,66,0 1/1:0,50:50:99:1693,138,0 1/1:0,33:33:90.28:1124,90,0 1/1:0,30:30:84.22:1011,84,0 1/1:0,28:28:78.23:960,78,0 1/1:0,21:21:54.17:677,54,0 1/1:0,23:23:63.18:744,63,0 1/1:0,15:15:42.13:512,42,0 1/1:0,11:11:33.10:396,33,0 1/1:0,14:14:36.08:420,36,0 1/1:0,45:45:99:1422,120,0 1/1:0,23:24:66.19:773,66,0 1/1:0,28:28:78.23:956,78,0 1/1:0,25:25:69.21:846,69,0 1/1:0,25:25:72.19:872,72,0 1/1:0,36:36:90.28:1142,90,0 1/1:0,29:30:78.22:931,78,0 1/1:0,21:21:60.18:727,60,0 1/1:0,23:23:63.19:773,63,0 1/1:0,20:20:57.16:674,57,0 1/1:0,22:22:63.19:756,63,0 1 150531905 . C A 811.26 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.595;DP=2170;Dels=0.00;FS=8.293;HRun=0;HaplotypeScore=7.1347;InbreedingCoeff=-0.0244;MQ=58.44;MQ0=0;MQRankSum=1.184;QD=12.11;ReadPosRankSum=4.354 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,108,1318 0/0:33,0:33:87.25:0,87,1042 0/0:23,0:23:57.18:0,57,719 0/0:140,0:140:99:0,346,4544 0/0:131,0:131:99:0,334,4313 0/0:90,0:90:99:0,220,2887 0/0:53,0:53:99:0,129,1681 0/0:106,0:106:99:0,250,3242 0/0:30,0:30:69.21:0,69,846 0/0:31,0:31:84.25:0,84,1038 0/0:36,0:36:93.25:0,93,1124 0/0:31,0:31:78.24:0,78,984 0/0:26,0:26:66.21:0,66,823 0/0:38,0:38:96.29:0,96,1181 0/0:96,0:96:99:0,232,2825 0/0:42,0:42:99:0,114,1389 0/0:24,0:24:63.18:0,63,762 0/1:18,17:35:99:476,0,483 0/0:48,0:48:99:0,114,1363 0/0:75,0:75:99:0,181,2211 0/0:70,0:70:99:0,166,2101 0/0:45,0:45:99:0,120,1449 0/0:160,0:160:99:0,376,4934 0/0:73,1:74:99:0,154,2231 0/0:95,0:95:99:0,232,3068 0/0:74,0:74:99:0,169,2247 0/0:17,0:17:45.13:0,45,553 0/0:31,0:31:78.24:0,78,973 0/0:28,0:28:75.23:0,75,927 0/0:27,0:27:57.18:0,57,738 0/0:25,0:25:66.19:0,66,816 0/0:67,0:67:99:0,159,2043 0/0:40,0:40:96.30:0,96,1213 0/0:26,0:26:69.20:0,69,853 0/0:32,0:32:90.27:0,90,1105 0/0:31,0:31:78.25:0,78,995 0/0:52,0:52:99:0,135,1572 0/0:31,0:31:66.19:0,66,815 0/1:16,16:32:99:397,0,506 0/0:33,0:33:81.24:0,81,979 0/0:19,0:19:54.16:0,54,655 0/0:32,1:33:63.65:0,64,1056 1 150550737 . C T 499.45 . AC=6;AF=0.071;AN=84;BaseQRankSum=-22.857;DP=6226;DS;Dels=0.00;FS=3060.709;HRun=1;HaplotypeScore=3.5820;InbreedingCoeff=-0.1005;MQ=58.89;MQ0=0;MQRankSum=3.951;QD=0.48;ReadPosRankSum=-24.852 GT:AD:DP:GQ:PL 0/0:65,30:95:99:0,128,2151 0/0:82,39:122:99:0,101,2529 0/0:70,24:94:69.95:0,70,2165 0/1:113,136:250:20.88:21,0,3756 0/1:118,132:250:99:121,0,3834 0/0:141,109:250:99:0,350,5171 0/0:136,95:233:1.85:0,2,4748 0/0:135,115:250:99:0,241,4569 0/0:87,32:119:99:0,178,2785 0/0:66,29:95:99:0,134,2173 0/0:54,40:94:95.78:0,96,1693 0/0:70,36:106:99:0,135,2187 0/0:54,39:93:24.03:0,24,1644 0/0:53,30:83:1.86:3,0,1514 0/0:127,121:250:2.15:2,0,3785 0/0:62,23:85:51.52:0,52,1939 0/0:78,28:106:99:0,111,2235 0/0:76,40:116:83.09:0,83,2292 0/0:127,47:176:99:0,124,3903 0/0:159,72:231:99:0,307,4975 0/0:141,64:205:17.88:0,18,4154 0/0:76,45:121:99:0,107,2406 0/1:115,135:250:99:247,0,3895 0/0:144,106:250:99:0,104,5017 0/0:150,100:250:99:0,303,5351 0/0:155,95:250:99:0,267,5287 0/0:43,24:67:62.74:0,63,1306 0/0:58,31:90:23.39:0,23,1679 0/0:64,32:96:84.26:0,84,2010 0/0:64,19:83:99:0,125,2082 0/1:58,39:97:99:110,0,1709 0/0:159,82:242:99:0,212,4655 0/0:97,43:140:99:0,200,3139 0/0:60,22:82:62.18:0,62,1888 0/0:68,41:109:99:0,101,2173 0/0:78,35:113:99:0,188,2503 0/0:120,52:173:86.84:0,87,3420 0/0:79,29:109:41.49:0,41,2490 0/0:80,28:108:99:0,141,2636 0/1:47,33:80:50.78:51,0,1390 0/0:70,21:91:99:0,141,2212 0/1:82,39:122:52.92:53,0,2389 1 150598965 . G A 1806.45 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.650;DP=4764;DS;Dels=0.00;FS=8.318;HRun=0;HaplotypeScore=1.4979;InbreedingCoeff=-0.0244;MQ=58.71;MQ0=0;MQRankSum=3.039;QD=12.72;ReadPosRankSum=-0.506 GT:AD:DP:GQ:PL 0/0:86,1:87:99:0,193,2718 0/0:99,0:99:99:0,259,3133 0/0:73,0:73:99:0,193,2344 0/0:215,1:216:99:0,509,6934 0/0:202,0:202:99:0,488,6481 0/0:175,0:175:99:0,421,5515 0/0:162,4:166:99:0,297,5143 0/0:145,1:146:99:0,320,4648 0/0:88,0:88:99:0,220,2728 0/0:68,0:68:99:0,178,2131 0/0:79,1:80:99:0,175,2505 0/0:74,0:74:99:0,187,2331 0/0:75,0:75:99:0,199,2401 0/0:78,0:78:99:0,217,2631 0/0:247,0:247:99:0,638,7670 0/0:76,0:76:99:0,199,2356 0/0:92,0:92:99:0,244,2948 0/0:72,0:72:99:0,190,2291 0/0:124,0:124:99:0,328,3904 0/0:147,0:147:99:0,334,4233 0/0:139,0:139:99:0,343,4298 0/0:87,0:87:99:0,208,2605 0/0:241,3:244:99:0,509,7691 0/0:168,1:169:99:0,397,5591 0/0:165,0:165:99:0,397,5232 0/0:137,0:137:99:0,331,4432 0/1:36,35:71:99:926,0,1014 0/1:35,36:71:99:943,0,907 0/0:70,0:70:99:0,184,2259 0/0:77,0:78:99:0,205,2484 0/0:78,0:78:99:0,208,2541 0/0:161,0:161:99:0,373,4680 0/0:93,0:93:99:0,235,2878 0/0:82,0:82:99:0,217,2607 0/0:81,0:81:99:0,199,2464 0/0:79,0:79:99:0,217,2587 0/0:132,0:133:99:0,337,4076 0/0:93,0:93:99:0,241,2904 0/0:81,1:82:99:0,190,2593 0/0:84,0:84:99:0,232,2779 0/0:89,0:90:99:0,223,2727 0/0:91,1:92:99:0,203,2837 1 150737220 . A G 9688.91 . AC=10;AF=0.119;AN=84;BaseQRankSum=-11.366;DP=3580;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=6.0536;InbreedingCoeff=0.0919;MQ=58.98;MQ0=0;MQRankSum=0.588;QD=12.94;ReadPosRankSum=-1.281 GT:AD:DP:GQ:PL 0/0:74,0:74:99:0,184,2248 0/0:71,0:71:99:0,187,2206 0/0:71,0:72:99:0,184,2176 0/1:63,54:119:99:1291,0,1550 1/1:0,90:92:99:2683,223,0 0/0:120,0:120:99:0,334,4220 0/0:96,0:96:99:0,259,3180 0/0:105,1:106:99:0,239,3318 0/0:88,0:88:99:0,223,2633 0/1:33,26:59:99:521,0,920 0/0:57,0:57:99:0,150,1823 0/0:74,0:74:99:0,171,2045 0/0:59,0:60:99:0,165,1949 0/0:65,0:66:99:0,172,2070 0/0:232,0:232:99:0,572,6883 0/1:27,26:53:99:508,0,724 0/0:66,1:70:99:0,141,1916 0/0:67,0:67:99:0,180,2151 0/0:105,0:107:99:0,274,3292 0/0:113,0:115:99:0,316,3723 0/0:125,0:126:99:0,352,4262 0/0:93,0:93:99:0,253,2985 0/1:70,50:123:99:1316,0,1950 0/0:72,0:75:99:0,184,2252 0/0:80,0:81:99:0,217,2576 0/0:80,0:80:99:0,217,2700 0/0:52,1:53:99:0,115,1580 0/0:74,0:74:99:0,199,2401 0/0:75,0:76:99:0,214,2580 0/0:72,0:72:99:0,190,2270 0/0:76,0:76:99:0,202,2432 0/0:120,0:121:99:0,322,3837 0/0:86,0:87:99:0,232,2723 0/0:62,0:62:99:0,165,1943 0/0:59,1:60:99:0,124,1846 0/0:85,0:85:99:0,229,2698 0/1:46,39:87:99:928,0,1247 0/0:78,0:79:99:0,211,2465 0/1:33,42:77:99:974,0,849 0/1:36,34:72:99:801,0,983 0/0:56,0:56:99:0,156,1873 0/1:39,28:67:99:668,0,1043 1 150737226 . A C 96.38 . AC=3;AF=0.036;AN=84;BaseQRankSum=-34.579;DP=4856;DS;Dels=0.00;FS=983.483;HRun=2;HaplotypeScore=9.4142;InbreedingCoeff=-0.0490;MQ=59.09;MQ0=0;MQRankSum=-1.352;QD=0.29;ReadPosRankSum=-22.230 GT:AD:DP:GQ:PL 0/0:73,37:111:99:0,123,2119 0/0:54,41:95:65.61:0,66,1805 0/0:59,34:93:54.95:0,55,1925 0/0:102,60:162:85.30:0,85,3033 0/0:84,48:132:99:0,154,2669 0/0:107,50:157:99:0,282,3643 0/0:91,51:142:99:0,183,2918 0/0:90,37:127:99:0,183,2873 0/0:88,23:113:99:0,244,2867 0/0:51,31:82:64.55:0,65,1592 0/1:55,37:93:20.65:21,0,1569 0/0:56,35:91:99:0,125,1714 0/0:63,23:86:72.64:0,73,1834 0/0:55,34:89:22.38:0,22,1617 0/0:133,117:250:10.02:0,10,3688 0/0:45,18:63:23.06:0,23,1372 0/0:59,40:100:60.88:0,61,1773 0/0:66,21:87:41.89:0,42,2014 0/0:90,43:133:0.78:7,0,2672 0/0:118,44:163:99:0,309,3635 0/1:116,49:166:17.95:18,0,3600 0/0:79,36:115:72.28:0,72,2176 0/0:119,68:189:99:0,232,3783 0/0:59,44:103:40.38:0,40,1789 0/0:78,45:123:99:0,171,2428 0/0:71,37:109:99:0,167,2409 0/1:46,33:79:99:130,0,1254 0/0:69,33:102:66.40:0,66,2152 0/0:72,26:98:99:0,121,2322 0/0:58,27:86:99:0,135,1916 0/0:72,30:102:73.37:0,73,2187 0/0:121,47:168:99:0,253,3573 0/0:76,49:125:99:0,132,2411 0/0:60,40:100:30.46:0,30,1752 0/0:56,31:87:99:0,103,1785 0/0:73,39:113:99:0,135,2290 0/0:83,47:130:19.89:0,20,2455 0/0:78,34:112:99:0,128,2393 0/0:73,31:104:99:0,174,2235 0/0:70,32:102:73.34:0,73,2148 0/0:55,23:78:42.35:0,42,1684 0/0:66,29:95:99:0,115,1934 1 150785729 . CTGCTGG C 156.89 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.175;DP=2651;DS;FS=386.443;HRun=0;HaplotypeScore=339.4599;InbreedingCoeff=-0.0125;MQ=57.64;MQ0=0;MQRankSum=-8.235;QD=2.66;ReadPosRankSum=-16.470 GT:AD:DP:GQ:PL 0/0:43,0:43:78.44:0,78,3358 0/0:38,0:38:47.46:0,47,2712 0/0:44,0:44:99:0,114,3292 0/0:111,0:111:99:0,153,8020 0/0:112,0:112:99:0,224,9090 0/0:106,0:104:99:0,203,7978 0/0:86,0:83:99:0,142,6337 0/0:95,0:93:99:0,178,6493 0/0:40,0:40:79.43:0,79,3247 0/0:39,0:39:94.27:0,94,3118 0/0:40,0:40:78.34:0,78,2705 0/0:47,0:47:99:0,112,3610 0/1:38,21:59:99:212,0,3172 0/0:57,0:57:95.56:0,96,3638 0/0:106,0:106:99:0,178,7920 0/0:38,0:38:69.36:0,69,2801 0/0:44,0:44:99:0,111,3161 0/0:50,0:50:99:0,138,4303 0/0:59,0:59:83.73:0,84,3386 0/0:94,0:94:99:0,190,7100 0/0:82,0:82:99:0,182,5594 0/0:63,0:62:99:0,117,4998 0/0:154,0:153:99:0,158,10521 0/0:90,0:84:99:0,175,6597 0/0:86,0:83:99:0,164,6816 0/0:78,0:76:99:0,169,5956 0/0:48,0:48:99:0,114,3492 0/0:45,0:45:99:0,108,3283 0/0:49,0:49:99:0,118,3626 0/0:34,0:34:36.55:0,37,2315 0/0:44,0:44:14.48:0,14,2904 0/0:80,0:80:99:0,168,5904 0/0:49,0:49:75.48:0,75,3504 0/0:51,0:51:99:0,118,4428 0/0:41,0:41:44.80:0,45,2959 0/0:56,0:56:50.26:0,50,3474 0/0:57,0:57:99:0,135,4497 0/0:52,0:52:99:0,139,4354 0/0:50,0:50:65.61:0,66,3612 0/0:41,0:41:65.67:0,66,2707 0/0:40,0:40:99:0,101,3174 0/0:53,0:53:99:0,135,4334 1 150785732 . CTGG C 852.80 . AC=6;AF=0.071;AN=84;BaseQRankSum=8.221;DP=2464;DS;FS=677.627;HRun=0;HaplotypeScore=221.2599;InbreedingCoeff=-0.0809;MQ=57.87;MQ0=0;MQRankSum=-1.241;QD=1.92;ReadPosRankSum=-20.812 GT:AD:DP:GQ:PL 0/0:40,0:40:60.32:0,60,2046 0/0:38,0:38:25.55:0,26,1796 0/0:38,0:38:84.27:0,84,1870 0/0:100,0:100:63.18:0,63,4700 0/0:100,0:100:81.94:0,82,5444 0/0:94,0:92:99:0,153,4927 0/0:80,0:76:89.16:0,89,3906 0/0:85,0:83:99:0,130,3908 0/0:41,0:41:44.58:0,45,2028 0/0:33,0:33:76.24:0,76,1919 0/0:30,0:30:30.86:0,31,1488 0/0:43,0:43:97.21:0,97,2249 0/1:59,0:59:99:212,0,2069 0/0:46,0:46:16.78:0,17,1960 0/0:94,0:94:86.80:0,87,4646 0/0:38,0:38:28.39:0,28,1597 0/0:40,0:40:81.24:0,81,1786 0/0:43,0:43:99:0,117,2715 0/1:47,0:47:37.53:38,0,1821 0/0:91,0:91:99:0,145,4442 0/0:73,0:73:2.89:0,3,2884 0/0:56,0:56:50.90:0,51,2954 0/1:119,94:212:99:662,0,5970 0/0:75,0:71:99:0,118,3823 0/0:85,0:81:83.80:0,84,4257 0/0:72,0:70:99:0,139,3626 0/0:42,0:42:96.30:0,96,2202 0/0:43,0:43:90.30:0,90,1992 0/0:45,0:45:74.37:0,74,2188 0/0:34,0:34:39.54:0,40,1606 0/1:38,0:38:12.63:13,0,1578 0/0:74,0:74:99:0,136,3673 0/0:45,0:45:55.30:0,55,2066 0/0:52,0:52:99:0,101,2807 0/0:37,0:37:32.77:0,33,1828 0/1:45,0:45:26.28:26,0,1802 0/0:44,0:44:80.35:0,80,2450 0/0:45,0:45:99:0,109,2610 0/1:43,0:43:13.69:14,0,2011 0/0:37,0:37:17.38:0,17,1525 0/0:37,0:37:80.16:0,80,1892 0/0:49,0:49:96.11:0,96,2764 1 150785735 . G C 7344.48 . AC=38;AF=0.452;AN=84;BaseQRankSum=-16.023;DP=3422;DS;Dels=0.03;FS=1754.568;HRun=3;HaplotypeScore=11.8465;InbreedingCoeff=-0.8258;MQ=58.22;MQ0=0;MQRankSum=-2.751;QD=2.45;ReadPosRankSum=-21.549 GT:AD:DP:GQ:PL 0/1:34,29:63:99:120,0,926 0/1:30,26:56:99:212,0,833 0/1:28,25:53:99:193,0,720 0/1:74,78:152:99:461,0,1887 0/1:82,76:158:99:367,0,2344 0/1:71,59:130:99:136,0,2212 0/1:56,57:113:99:201,0,1603 0/1:58,61:119:99:117,0,1443 0/1:30,28:58:99:287,0,842 0/1:29,29:58:99:268,0,776 0/1:23,26:49:99:292,0,672 0/1:29,22:51:38.44:38,0,840 0/0:33,4:37:93.24:0,93,1078 0/1:31,38:69:99:218,0,835 0/1:77,70:147:99:393,0,1969 0/1:28,25:53:99:145,0,643 0/1:27,23:50:24.14:24,0,676 0/0:35,23:58:42.47:0,42,1173 0/1:35,39:74:99:415,0,807 0/1:68,51:119:99:163,0,1860 0/1:54,37:91:99:393,0,1247 0/1:42,44:86:99:186,0,1250 0/0:96,18:114:99:0,250,3020 0/1:60,60:120:72.94:73,0,1828 0/1:60,64:124:99:193,0,1860 0/1:53,50:103:99:113,0,1683 0/1:32,20:52:55.36:55,0,847 0/1:31,23:54:99:109,0,815 0/1:35,24:59:83.86:84,0,1032 0/1:24,23:47:99:198,0,727 0/1:30,35:65:99:280,0,740 0/0:54,47:102:44.86:0,45,1623 0/1:31,46:77:99:303,0,852 0/1:40,21:61:25.28:25,0,1188 0/1:26,20:46:99:134,0,770 0/1:33,32:65:99:290,0,797 0/1:40,31:73:99:295,0,1086 0/1:38,33:71:69.22:69,0,1150 0/1:34,25:59:99:202,0,921 0/1:22,26:48:80.88:81,0,623 0/1:33,20:53:99:115,0,797 0/1:42,28:70:95.69:96,0,1219 1 150938672 . T TA 28.71 . 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A G 12291.47 . 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A T 5193.48 . AC=3;AF=0.036;AN=84;BaseQRankSum=7.224;DP=3765;Dels=0.00;FS=2.244;HRun=1;HaplotypeScore=1.6638;InbreedingCoeff=-0.0370;MQ=59.19;MQ0=0;MQRankSum=1.496;QD=13.74;ReadPosRankSum=0.070 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,184,2158 0/0:79,0:79:99:0,211,2507 0/0:71,0:71:99:0,202,2374 0/0:124,0:124:99:0,355,4201 0/0:105,0:105:99:0,307,3658 0/0:100,0:100:99:0,274,3385 0/0:78,0:78:99:0,229,2721 0/0:94,0:94:99:0,262,3158 0/0:79,0:79:99:0,205,2442 0/0:71,0:71:99:0,193,2253 0/0:63,0:63:99:0,178,2094 0/0:66,0:66:99:0,175,2079 0/1:43,30:73:99:799,0,1228 0/0:70,0:70:99:0,193,2299 0/1:111,133:246:99:3608,0,2951 0/0:45,0:45:99:0,129,1509 0/1:30,29:59:99:787,0,873 0/0:66,0:66:99:0,187,2198 0/0:133,0:133:99:0,373,4418 0/0:167,0:167:99:0,442,5326 0/0:170,0:170:99:0,451,5447 0/0:96,0:96:99:0,259,3085 0/0:130,0:130:99:0,361,4313 0/0:80,0:80:99:0,226,2734 0/0:91,0:91:99:0,262,3098 0/0:80,0:80:99:0,217,2598 0/0:64,0:64:99:0,178,2108 0/0:62,0:62:99:0,175,2052 0/0:78,0:78:99:0,226,2640 0/0:65,0:65:99:0,187,2217 0/0:77,0:77:99:0,217,2564 0/0:116,0:116:99:0,316,3797 0/0:100,0:100:99:0,274,3261 0/0:78,0:78:99:0,229,2701 0/0:56,0:56:99:0,159,1879 0/0:85,0:85:99:0,238,2806 0/0:129,1:130:99:0,343,4087 0/0:60,0:60:99:0,162,1930 0/0:64,0:64:99:0,184,2166 0/0:80,0:80:99:0,226,2676 0/0:68,0:68:99:0,196,2286 0/0:82,0:82:99:0,232,2730 1 151011325 . C T 8517.14 . AC=8;AF=0.095;AN=84;BaseQRankSum=-1.252;DP=2906;Dels=0.00;FS=7.540;HRun=0;HaplotypeScore=2.2573;InbreedingCoeff=0.1711;MQ=59.31;MQ0=0;MQRankSum=1.518;QD=14.05;ReadPosRankSum=0.590 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,150,1756 0/0:58,0:58:99:0,156,1871 0/0:51,0:51:99:0,150,1739 0/1:59,42:101:99:1041,0,1734 0/0:106,0:106:99:0,280,3524 0/0:81,0:81:99:0,199,2543 0/0:88,0:88:99:0,226,2851 0/0:73,0:73:99:0,193,2418 0/0:72,0:72:99:0,199,2341 0/0:51,0:51:99:0,144,1682 0/0:44,0:44:99:0,120,1420 0/0:53,0:53:99:0,135,1565 0/1:27,29:56:99:776,0,667 0/0:51,0:51:99:0,138,1629 0/1:98,100:204:99:2637,0,2486 0/0:65,0:65:99:0,177,2104 1/1:1,58:59:99:1956,135,0 0/0:54,0:54:99:0,159,1852 0/0:64,0:66:99:0,174,1973 0/0:96,0:97:99:0,256,2955 0/0:99,0:99:99:0,259,3079 0/0:60,1:61:99:0,129,1866 0/1:64,45:109:99:1095,0,1819 0/0:75,0:76:99:0,187,2412 0/0:76,1:77:99:0,146,2233 0/0:70,1:71:99:0,144,2114 0/0:36,0:36:99:0,99,1160 0/0:67,0:67:99:0,184,2143 0/0:47,0:47:99:0,135,1560 0/1:19,14:33:99:405,0,496 0/1:22,22:44:99:608,0,543 0/0:87,0:87:99:0,190,2359 0/0:59,0:59:99:0,162,1913 0/0:60,0:60:99:0,168,2006 0/0:53,0:53:99:0,150,1766 0/0:63,0:63:99:0,165,2024 0/0:85,0:85:99:0,226,2655 0/0:60,0:60:99:0,162,1868 0/0:58,0:58:99:0,159,1876 0/0:66,0:66:99:0,177,2053 0/0:51,0:51:99:0,138,1653 0/0:59,0:59:99:0,162,1924 1 151028162 . T G 161.25 . AC=11;AF=0.131;AN=84;BaseQRankSum=-13.461;DP=862;Dels=0.00;FS=225.504;HRun=4;HaplotypeScore=0.4473;InbreedingCoeff=-0.2078;MQ=58.97;MQ0=0;MQRankSum=0.024;QD=0.76;ReadPosRankSum=-6.265 GT:AD:DP:GQ:PL 0/0:14,5:19:38.26:0,38,406 0/0:9,5:14:24.04:0,24,256 0/0:11,4:15:4.41:0,4,305 0/0:27,18:45:53.73:0,54,857 0/1:15,18:33:34.73:35,0,448 0/0:25,8:33:62.47:0,62,743 0/0:16,8:24:41.95:0,42,494 0/0:13,7:20:6.49:0,6,393 0/0:10,3:13:2.22:0,2,279 0/1:5,5:10:22.76:23,0,120 0/0:12,4:16:33.10:0,33,388 0/0:12,3:15:10.42:0,10,301 0/0:10,3:13:1.75:3,0,322 0/1:11,8:19:14.25:14,0,346 0/0:39,18:57:80.91:0,81,1224 0/0:11,3:15:10.38:0,10,311 0/0:19,8:27:1.89:3,0,581 0/1:8,5:13:43.72:44,0,188 0/1:7,4:11:64.53:65,0,168 0/0:14,5:19:42.08:0,42,473 0/0:13,3:16:2.59:1,0,353 0/0:9,2:11:27.06:0,27,298 0/1:37,22:59:19.50:19,0,1088 0/0:21,9:30:32.51:0,33,688 0/0:18,11:29:51.15:0,51,628 0/0:18,10:28:18.53:0,19,555 0/0:11,5:16:10.39:0,10,330 0/0:15,4:19:21.44:0,21,491 0/1:7,7:14:5.10:5,0,189 0/0:9,7:16:27.08:0,27,328 0/0:12,3:15:36.09:0,36,403 0/0:11,13:24:2.67:0,3,357 0/0:9,9:18:7.34:0,7,265 0/0:6,0:6:15.05:0,15,191 0/0:14,7:21:6.37:0,6,443 0/1:11,5:16:38.97:39,0,305 0/0:19,9:28:15.24:0,15,502 0/1:6,5:11:11.44:11,0,189 0/1:5,4:9:19.75:20,0,157 0/0:11,3:14:7.37:0,7,306 0/1:7,11:18:11.57:12,0,153 0/0:9,4:13:27.08:0,27,332 1 151089885 . G C 2252.06 . AC=2;AF=0.024;AN=84;BaseQRankSum=-11.120;DP=5372;DS;Dels=0.00;FS=2.938;HRun=0;HaplotypeScore=4.8844;InbreedingCoeff=-0.0244;MQ=59.48;MQ0=0;MQRankSum=0.882;QD=12.87;ReadPosRankSum=-1.386 GT:AD:DP:GQ:PL 0/0:111,0:111:99:0,304,3872 0/1:48,45:93:99:1220,0,1457 0/1:40,42:82:99:1095,0,1207 0/0:192,0:192:99:0,536,7209 0/0:231,0:231:99:0,632,8587 0/0:214,0:214:99:0,575,7766 0/0:166,0:166:99:0,445,6010 0/0:193,0:193:99:0,518,6994 0/0:125,0:125:99:0,331,4281 0/0:110,0:110:99:0,301,3858 0/0:96,0:96:99:0,256,3301 0/0:92,0:92:99:0,250,3182 0/0:86,0:86:99:0,238,3006 0/0:96,0:96:99:0,274,3488 0/0:221,0:221:99:0,596,7549 0/0:87,0:87:99:0,241,3075 0/0:106,0:106:99:0,295,3740 0/0:112,0:112:99:0,322,4119 0/0:162,0:163:99:0,439,5619 0/0:134,0:135:99:0,382,4824 0/0:122,0:122:99:0,328,4133 0/0:84,0:84:99:0,229,2918 0/0:194,0:194:99:0,536,7329 0/0:189,0:189:99:0,506,6912 0/0:208,0:209:99:0,545,7350 0/0:179,0:179:99:0,497,6728 0/0:70,0:70:99:0,196,2514 0/0:110,0:110:99:0,298,3816 0/0:112,0:112:99:0,304,3917 0/0:95,0:95:99:0,259,3291 0/0:84,0:84:99:0,241,3064 0/0:121,0:121:99:0,310,4060 0/0:82,0:82:99:0,223,2844 0/0:113,0:113:99:0,319,4048 0/0:104,0:104:99:0,277,3573 0/0:118,0:118:99:0,337,4272 0/0:131,0:131:99:0,346,4460 0/0:121,0:121:99:0,322,4126 0/0:107,1:108:99:0,263,3764 0/0:88,0:88:99:0,250,3155 0/0:118,0:118:99:0,310,3990 0/0:109,0:109:99:0,286,3724 1 151089888 . A C 8020.25 . AC=5;AF=0.060;AN=84;BaseQRankSum=18.605;DP=5286;DS;Dels=0.00;FS=0.719;HRun=0;HaplotypeScore=4.7708;InbreedingCoeff=-0.0633;MQ=59.52;MQ0=0;MQRankSum=-2.157;QD=14.42;ReadPosRankSum=-1.227 GT:AD:DP:GQ:PL 0/0:109,0:109:99:0,304,3634 0/1:49,44:93:99:1254,0,1401 0/1:39,39:78:99:1168,0,1092 0/0:191,0:191:99:0,530,6433 0/0:225,0:225:99:0,617,7612 0/0:210,0:210:99:0,572,7240 0/1:86,79:165:99:2520,0,2417 0/0:187,0:187:99:0,500,6189 0/1:74,49:123:99:1359,0,2044 0/0:104,0:104:99:0,292,3458 0/1:39,58:97:99:1720,0,1024 0/0:98,0:98:99:0,268,3180 0/0:86,0:86:99:0,241,2842 0/0:96,1:97:99:0,265,3182 0/0:217,0:217:99:0,587,6982 0/0:82,0:82:99:0,232,2739 0/0:104,0:104:99:0,289,3429 0/0:114,0:114:99:0,325,3874 0/0:156,0:156:99:0,424,5177 0/0:132,0:132:99:0,361,4307 0/0:127,0:127:99:0,337,4081 0/0:79,0:79:99:0,217,2584 0/0:189,0:189:99:0,515,6322 0/0:191,0:191:99:0,533,6582 0/0:205,0:205:99:0,539,6739 0/0:174,0:174:99:0,481,5928 0/0:68,0:68:99:0,193,2312 0/0:113,0:113:99:0,310,3746 0/0:106,0:106:99:0,295,3566 0/0:94,0:94:99:0,256,3079 0/0:84,0:84:99:0,241,2887 0/0:118,1:119:99:0,313,3879 0/0:76,0:76:99:0,211,2501 0/0:110,0:110:99:0,313,3719 0/0:105,0:105:99:0,277,3390 0/0:116,0:116:99:0,322,3855 0/0:126,0:126:99:0,334,4072 0/0:122,0:122:99:0,328,3883 0/0:104,1:105:99:0,289,3450 0/0:85,0:85:99:0,238,2813 0/0:114,0:115:99:0,301,3672 0/0:109,0:109:99:0,295,3585 1 151108137 . T G 78061.22 . 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A C 146.95 . 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G A 76745.03 . 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T C 1663.48 . 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G A 922.12 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.388;DP=970;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.6730;InbreedingCoeff=-0.0245;MQ=59.22;MQ0=0;MQRankSum=0.904;QD=11.53;ReadPosRankSum=1.623 GT:AD:DP:GQ:PL 0/0:9,0:9:27.07:0,27,299 0/0:20,0:20:51.15:0,51,634 0/0:15,0:15:39.11:0,39,462 0/0:41,0:41:99:0,108,1370 0/0:34,0:34:93.30:0,93,1197 0/0:31,0:31:84.27:0,84,1083 0/0:25,0:25:66.21:0,66,855 0/0:14,0:14:39.12:0,39,497 0/0:18,0:18:48.14:0,48,575 0/0:14,0:14:42.11:0,42,467 0/0:20,1:21:60.17:0,60,687 0/0:25,0:25:69.19:0,69,781 0/0:12,0:12:33.10:0,33,396 0/0:22,0:22:60.14:0,60,692 0/1:37,31:68:99:847,0,978 0/1:6,6:12:99:137,0,170 0/0:15,0:15:39.10:0,39,455 0/0:21,0:21:60.16:0,60,690 0/0:40,0:40:93.25:0,93,1129 0/0:30,0:30:75.22:0,75,908 0/0:31,0:31:84.21:0,84,991 0/0:19,0:19:54.15:0,54,625 0/0:44,0:44:99:0,114,1435 0/0:30,0:30:75.22:0,75,952 0/0:25,0:25:66.20:0,66,841 0/0:31,0:31:81.25:0,81,1007 0/0:14,0:14:39.11:0,39,457 0/0:25,0:25:72.19:0,72,820 0/0:13,0:13:36.08:0,36,405 0/0:7,0:7:21.05:0,21,221 0/0:17,0:17:42.12:0,42,514 0/0:27,0:27:72.17:0,72,817 0/0:17,0:17:42.10:0,42,481 0/0:17,0:17:48.13:0,48,547 0/0:20,0:20:57.13:0,57,642 0/0:25,0:25:66.16:0,66,746 0/0:30,0:30:81.23:0,81,945 0/0:14,0:14:39.11:0,39,462 0/0:19,0:19:54.15:0,54,619 0/0:19,0:19:57.15:0,57,651 0/0:21,0:21:63.17:0,63,720 0/0:18,0:18:54.16:0,54,631 1 151501841 . C G 4079.46 . 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A G 1308.01 . 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G A 519.73 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.631;DP=859;Dels=0.00;FS=1.390;HRun=0;HaplotypeScore=0.6854;InbreedingCoeff=-0.0248;MQ=58.98;MQ0=0;MQRankSum=0.593;QD=9.99;ReadPosRankSum=-0.090 GT:AD:DP:GQ:PL 0/0:14,0:14:39.12:0,39,477 0/0:11,0:11:33.07:0,33,382 0/0:14,0:14:42.12:0,42,506 0/0:32,0:32:96.31:0,96,1242 0/0:35,1:36:65.35:0,65,1281 0/0:33,0:33:96.30:0,96,1229 0/0:20,0:20:54.17:0,54,696 0/0:27,0:27:78.23:0,78,976 0/0:18,0:18:54.13:0,54,631 0/0:18,0:18:51.14:0,51,599 0/0:14,0:14:42.13:0,42,518 0/0:11,0:11:30.09:0,30,362 0/0:12,0:12:36.10:0,36,419 0/0:18,0:18:54.16:0,54,663 0/0:36,0:36:99:0,102,1241 0/0:14,1:15:42.12:0,42,507 0/0:16,0:16:42.11:0,42,500 0/0:17,0:17:51.14:0,51,610 0/0:37,1:38:99:0,102,1241 0/0:28,0:28:81.24:0,81,971 0/1:12,9:21:99:258,0,335 0/0:14,0:14:39.11:0,39,461 0/0:26,0:26:72.23:0,72,945 0/0:13,0:13:39.12:0,39,493 0/0:25,1:26:75.24:0,75,994 0/0:26,0:26:75.24:0,75,993 0/0:23,0:23:69.21:0,69,840 0/0:23,0:23:63.17:0,63,741 0/0:17,0:17:51.14:0,51,611 0/0:14,0:14:39.09:0,39,459 0/0:16,0:16:45.13:0,45,539 0/1:18,13:31:99:325,0,516 0/0:20,0:21:57.17:0,57,692 0/0:20,0:20:57.15:0,57,680 0/0:10,0:10:27.09:0,27,346 0/0:15,0:15:42.13:0,42,510 0/0:29,0:30:78.24:0,78,965 0/0:18,0:18:51.15:0,51,627 0/0:17,0:17:48.13:0,48,563 0/0:29,0:29:84.23:0,84,1013 0/0:5,0:5:15.04:0,15,181 0/0:15,0:15:42.13:0,42,523 1 151506526 . G A 339.83 . AC=3;AF=0.036;AN=84;BaseQRankSum=-3.866;DP=991;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8306;InbreedingCoeff=-0.0375;MQ=58.75;MQ0=0;MQRankSum=2.044;QD=13.07;ReadPosRankSum=1.255 GT:AD:DP:GQ:PL 0/1:4,5:9:99:139,0,107 0/0:6,0:6:18.04:0,18,203 0/0:14,0:14:36.11:0,36,451 0/0:58,0:58:99:0,172,2163 0/0:59,0:60:99:0,166,2116 0/0:32,0:32:90.26:0,90,1117 0/0:28,0:28:75.23:0,75,965 0/0:28,0:28:81.24:0,81,1007 0/0:11,0:11:33.10:0,33,407 0/0:19,0:20:51.11:0,51,607 0/0:8,0:8:24.08:0,24,302 0/0:20,0:20:57.12:0,57,643 0/0:6,0:6:18.05:0,18,209 0/0:21,0:21:60.16:0,60,704 0/0:45,0:47:99:0,120,1425 0/0:20,0:20:51.14:0,51,597 0/0:22,0:23:57.17:0,57,691 0/1:3,3:6:70.15:70,0,74 0/0:31,0:31:78.21:0,78,937 0/0:25,0:25:66.19:0,66,816 0/0:27,0:28:72.17:0,72,858 0/0:28,0:28:78.19:0,78,938 0/0:63,0:63:99:0,181,2381 0/0:32,0:32:90.27:0,90,1149 0/0:42,0:42:99:0,117,1418 0/0:32,0:32:93.28:0,93,1181 0/0:14,0:14:36.11:0,36,454 0/0:20,0:20:57.16:0,57,688 0/0:19,0:19:54.12:0,54,636 0/0:15,0:16:45.12:0,45,531 0/0:18,0:18:45.12:0,45,545 0/0:27,0:27:78.19:0,78,902 0/0:24,0:24:66.20:0,66,814 0/0:19,0:19:51.16:0,51,631 0/0:13,0:13:39.09:0,39,457 0/0:20,0:20:60.19:0,60,742 0/0:30,0:31:84.25:0,84,1009 0/0:18,0:18:54.15:0,54,643 0/1:4,7:11:99:206,0,115 0/0:14,0:14:39.09:0,39,463 0/0:11,0:12:33.10:0,33,411 0/0:17,0:17:48.12:0,48,574 1 151655919 . A T 966.76 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.962;DP=2218;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.4212;InbreedingCoeff=-0.0244;MQ=59.40;MQ0=0;MQRankSum=0.498;QD=12.89;ReadPosRankSum=-0.778 GT:AD:DP:GQ:PL 0/0:32,0:32:93.28:0,93,1102 0/0:46,0:46:99:0,126,1522 0/0:38,0:38:99:0,108,1308 0/0:104,0:104:99:0,283,3437 0/0:92,0:92:99:0,247,3085 0/0:88,0:88:99:0,232,2967 0/0:90,0:90:99:0,241,3033 0/0:71,0:71:99:0,196,2415 0/0:47,0:47:99:0,135,1606 0/0:33,0:33:93.28:0,93,1108 0/0:43,0:43:99:0,117,1439 0/0:36,0:36:99:0,102,1233 0/0:51,0:51:99:0,135,1652 0/0:43,0:43:99:0,117,1429 0/0:161,0:161:99:0,439,5296 0/0:38,0:38:99:0,105,1280 0/0:46,0:46:99:0,129,1567 0/0:42,0:42:99:0,114,1382 0/0:56,0:56:99:0,147,1818 0/0:44,0:44:99:0,111,1377 0/0:65,0:65:99:0,172,2117 0/0:38,0:38:99:0,111,1331 0/0:112,0:112:99:0,307,3785 0/0:61,0:61:99:0,178,2192 0/0:65,0:65:99:0,181,2234 0/0:66,0:66:99:0,187,2309 0/1:18,15:33:99:422,0,523 0/1:21,21:42:99:607,0,576 0/0:41,0:41:99:0,117,1397 0/0:41,0:41:99:0,111,1347 0/0:44,0:44:99:0,117,1443 0/0:31,0:31:87.27:0,87,1063 0/0:29,0:29:84.25:0,84,1007 0/0:40,0:40:99:0,120,1422 0/0:39,0:39:99:0,114,1368 0/0:39,0:39:99:0,108,1294 0/0:37,0:37:99:0,105,1274 0/0:40,0:40:99:0,114,1370 0/0:36,0:36:99:0,105,1245 0/0:52,0:52:99:0,141,1734 0/0:29,0:29:78.23:0,78,939 0/0:37,0:37:99:0,105,1269 1 151664910 . G T 8.04 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.204;DP=778;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.3830;InbreedingCoeff=-0.0127;MQ=58.84;MQ0=0;MQRankSum=2.502;QD=0.26;ReadPosRankSum=-3.338 GT:AD:DP:GQ:PL 0/0:20,0:20:57.18:0,57,708 0/0:14,1:15:42.13:0,42,524 0/0:20,0:20:60.19:0,60,743 0/0:30,2:32:57.79:0,58,1109 0/0:30,2:33:90.30:0,90,1222 0/0:22,1:23:63.20:0,63,836 0/0:9,0:9:27.09:0,27,369 0/0:20,0:20:57.18:0,57,753 0/0:17,1:19:51.16:0,51,634 0/0:10,1:11:30.09:0,30,366 0/0:13,1:14:39.12:0,39,475 0/0:12,0:12:30.09:0,30,375 0/0:15,0:15:42.13:0,42,524 0/0:17,0:17:45.14:0,45,564 0/0:44,0:45:99:0,123,1553 0/0:11,1:12:33.10:0,33,412 0/0:12,0:12:33.10:0,33,406 0/0:10,0:10:30.09:0,30,364 0/0:27,2:29:81.25:0,81,1019 0/0:30,0:30:84.25:0,84,1041 0/0:22,0:22:54.17:0,54,683 0/0:13,1:14:13.48:0,13,449 0/0:34,1:35:99:0,99,1314 0/0:10,0:10:30.10:0,30,410 0/0:16,0:16:45.15:0,45,617 0/0:16,0:16:45.15:0,45,598 0/0:14,0:14:33.10:0,33,411 0/0:16,0:16:45.14:0,45,572 0/0:13,0:13:36.11:0,36,454 0/0:19,0:19:57.16:0,57,693 0/0:21,1:22:41.51:0,42,750 0/1:26,5:31:53.51:54,0,864 0/0:9,0:9:27.09:0,27,340 0/0:17,1:19:51.16:0,51,648 0/0:13,1:14:39.12:0,39,487 0/0:11,0:11:33.10:0,33,407 0/0:26,1:27:43.86:0,44,884 0/0:14,0:14:42.13:0,42,519 0/0:16,0:16:45.14:0,45,559 0/0:16,0:16:48.15:0,48,596 0/0:14,1:15:39.13:0,39,496 0/0:9,1:10:27.08:0,27,333 1 151735545 . A G 895.13 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.746;DP=2341;DS;Dels=0.00;FS=2.847;HRun=1;HaplotypeScore=1.2851;InbreedingCoeff=-0.0244;MQ=58.95;MQ0=1;MQRankSum=-0.935;QD=11.78;ReadPosRankSum=-1.403 GT:AD:DP:GQ:PL 0/0:33,0:33:96.29:0,96,1137 0/0:36,0:36:99:0,102,1174 0/0:33,0:33:90.27:0,90,1084 0/0:126,0:127:99:0,373,4260 0/0:127,0:127:99:0,358,4166 0/0:68,0:69:99:0,187,2252 0/0:73,0:74:99:0,211,2509 0/0:102,0:102:99:0,292,3417 0/1:24,20:44:99:506,0,677 0/1:13,18:32:99:452,0,346 0/0:48,0:48:99:0,132,1557 0/0:37,0:37:99:0,108,1233 0/0:28,0:28:81.24:0,81,943 0/0:25,0:25:72.21:0,72,844 0/0:132,0:132:99:0,334,3938 0/0:38,0:38:99:0,114,1302 0/0:41,0:41:99:0,120,1388 0/0:26,0:27:66.19:0,66,783 0/0:60,0:60:99:0,150,1820 0/0:91,0:91:99:0,256,2950 0/0:67,0:67:99:0,183,2161 0/0:48,0:48:99:0,135,1562 0/0:123,0:123:99:0,355,4117 0/0:76,1:77:99:0,214,2497 0/0:83,1:84:99:0,238,2784 0/0:52,0:52:99:0,141,1677 0/0:27,0:27:78.22:0,78,924 0/0:29,0:29:84.25:0,84,994 0/0:28,0:28:78.24:0,78,930 0/0:39,0:39:99:0,111,1284 0/0:30,0:31:87.25:0,87,1015 0/0:78,0:78:99:0,211,2493 0/0:55,0:55:99:0,153,1806 0/0:49,0:50:99:0,138,1637 0/0:37,0:37:96.29:0,96,1141 0/0:44,0:44:99:0,129,1498 0/0:87,0:88:99:0,244,2887 0/0:42,0:42:99:0,111,1334 0/0:35,0:35:96.29:0,96,1147 0/0:38,0:38:99:0,111,1296 0/0:29,0:29:78.24:0,78,945 0/0:36,0:36:93.27:0,93,1103 1 151735576 . T C 6080.32 . AC=16;AF=0.190;AN=84;BaseQRankSum=12.713;DP=1480;Dels=0.00;FS=8.959;HRun=4;HaplotypeScore=1.5981;InbreedingCoeff=-0.0834;MQ=58.91;MQ0=1;MQRankSum=-0.466;QD=14.65;ReadPosRankSum=-5.390 GT:AD:DP:GQ:PL 0/1:8,8:19:99:242,0,223 0/0:28,1:29:75.21:0,75,871 0/0:15,1:16:9.62:0,10,418 0/0:86,2:88:99:0,220,2485 0/1:34,30:64:99:967,0,861 0/0:35,0:35:90.21:0,90,1020 0/0:39,1:40:99:0,108,1241 0/0:57,2:59:99:0,144,1594 0/0:24,0:24:69.17:0,69,800 0/0:24,1:25:45.47:0,45,714 0/0:17,0:17:45.13:0,45,517 0/0:24,0:24:57.15:0,57,657 0/0:20,1:22:45.12:0,45,511 0/1:8,6:14:99:139,0,232 0/0:89,7:97:99:0,235,2690 0/0:28,0:28:66.18:0,66,759 0/0:30,0:31:90.26:0,90,1068 0/1:16,7:23:99:170,0,427 0/0:33,4:38:49.67:0,50,891 0/0:53,3:56:99:0,132,1453 0/0:46,4:50:99:0,102,1179 0/1:15,17:32:99:555,0,350 0/0:64,2:67:99:0,146,1886 0/1:29,18:47:99:511,0,777 0/1:24,22:46:99:709,0,523 0/0:40,4:45:99:0,111,1293 0/1:6,9:15:99:249,0,170 1/1:0,18:18:48.15:598,48,0 0/1:10,8:18:99:254,0,230 0/0:30,0:30:81.21:0,81,931 0/0:24,0:24:63.17:0,63,734 0/0:57,3:60:99:0,147,1688 0/0:28,0:29:72.13:0,72,793 0/0:30,0:30:84.17:0,84,927 0/1:13,16:29:99:529,0,267 0/1:9,8:17:99:212,0,190 0/0:48,5:53:85.68:0,86,1288 0/0:25,1:27:63.16:0,63,708 0/1:13,8:21:99:237,0,309 0/1:13,17:30:99:486,0,306 0/1:10,8:19:99:224,0,218 0/0:21,0:21:54.13:0,54,627 1 151735594 . T A 225.19 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.842;DP=1293;Dels=0.00;FS=2.357;HRun=0;HaplotypeScore=1.2704;InbreedingCoeff=-0.0121;MQ=58.78;MQ0=1;MQRankSum=1.154;QD=16.08;ReadPosRankSum=0.001 GT:AD:DP:GQ:PL 0/0:18,0:18:48.12:0,48,554 0/0:29,0:29:84.24:0,84,1002 0/1:4,10:14:99:271,0,104 0/0:59,0:60:99:0,178,2139 0/0:57,0:57:99:0,166,2075 0/0:31,0:31:87.27:0,87,1089 0/0:43,0:43:99:0,126,1599 0/0:44,0:44:99:0,123,1558 0/0:24,0:24:69.19:0,69,832 0/0:21,0:21:60.18:0,60,720 0/0:19,0:19:54.17:0,54,656 0/0:19,0:19:57.17:0,57,683 0/0:17,0:17:42.13:0,42,506 0/0:12,0:12:33.07:0,33,392 0/0:84,0:84:99:0,238,2875 0/0:26,0:26:78.22:0,78,933 0/0:23,0:23:69.20:0,69,827 0/0:23,0:23:69.19:0,69,813 0/0:34,0:34:93.28:0,93,1137 0/0:50,0:50:99:0,141,1697 0/0:44,0:44:99:0,126,1512 0/0:26,0:26:78.24:0,78,933 0/0:59,0:59:99:0,169,2071 0/0:34,0:34:99:0,99,1238 0/0:39,0:39:99:0,114,1445 0/0:33,0:33:99:0,99,1257 0/0:18,0:18:54.14:0,54,623 0/0:18,0:18:54.15:0,54,634 0/0:17,0:17:51.16:0,51,617 0/0:28,0:28:81.25:0,81,992 0/0:27,0:27:81.25:0,81,978 0/0:54,0:54:99:0,162,1934 0/0:25,0:25:72.21:0,72,846 0/0:28,0:28:81.24:0,81,971 0/0:20,0:20:54.17:0,54,675 0/0:17,0:17:48.15:0,48,584 0/0:47,0:47:99:0,129,1571 0/0:28,0:29:78.22:0,78,919 0/0:18,0:18:54.17:0,54,652 0/0:26,0:26:75.23:0,75,909 0/0:19,0:19:57.16:0,57,679 0/0:19,0:19:57.16:0,57,674 1 151740666 . T C 48170.38 . AC=84;AF=1.000;AN=84;DP=1304;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.6389;InbreedingCoeff=-0.0000;MQ=59.16;MQ0=0;QD=36.94 GT:AD:DP:GQ:PL 1/1:0,25:25:72.22:896,72,0 1/1:0,20:20:57.18:731,57,0 1/1:0,23:23:66.21:837,66,0 1/1:0,46:46:99:1766,132,0 1/1:0,43:43:99:1721,126,0 1/1:0,32:32:96.32:1307,96,0 1/1:0,14:14:42.14:575,42,0 1/1:0,27:27:81.27:1114,81,0 1/1:0,32:32:93.29:1176,93,0 1/1:0,14:14:42.13:524,42,0 1/1:0,13:13:39.13:501,39,0 1/1:0,17:17:51.15:634,51,0 1/1:0,13:13:39.12:490,39,0 1/1:0,28:28:75.24:968,75,0 1/1:0,118:120:99:4110,322,0 1/1:0,26:26:78.24:969,78,0 1/1:0,19:19:57.18:719,57,0 1/1:0,17:17:51.15:626,51,0 1/1:0,37:37:99:1365,108,0 1/1:0,50:50:99:1758,135,0 1/1:0,45:45:99:1630,129,0 1/1:0,32:32:90.29:1155,90,0 1/1:0,39:39:99:1612,117,0 1/1:0,26:26:78.26:1067,78,0 1/1:0,27:27:72.24:1012,72,0 1/1:0,24:24:63.21:857,63,0 1/1:0,23:23:66.21:831,66,0 1/1:0,28:28:84.27:1071,84,0 1/1:0,32:32:90.29:1166,90,0 1/1:0,21:21:57.18:738,57,0 1/1:0,22:22:66.21:839,66,0 1/1:0,59:60:99:2179,169,0 1/1:0,31:31:87.27:1106,87,0 1/1:0,30:30:84.27:1084,84,0 1/1:0,29:29:87.28:1108,87,0 1/1:0,30:30:90.28:1122,90,0 1/1:0,50:50:99:1815,141,0 1/1:0,24:24:66.21:851,66,0 1/1:0,25:25:69.21:890,69,0 1/1:0,28:28:78.22:991,78,0 1/1:0,24:24:72.22:906,72,0 1/1:0,38:38:99:1355,105,0 1 151787114 . T C 84.68 . AC=8;AF=0.095;AN=84;BaseQRankSum=-10.962;DP=799;Dels=0.00;FS=184.363;HRun=2;HaplotypeScore=0.4777;InbreedingCoeff=-0.1586;MQ=58.59;MQ0=0;MQRankSum=1.063;QD=0.61;ReadPosRankSum=-8.885 GT:AD:DP:GQ:PL 0/0:12,4:16:6.61:0,7,404 0/0:20,3:23:10.82:0,11,610 0/0:14,2:16:1.13:5,0,425 0/0:32,12:44:91.80:0,92,1078 0/0:9,5:14:21.06:0,21,252 0/0:14,3:17:39.12:0,39,482 0/0:20,4:24:54.05:0,54,640 0/0:16,4:20:42.13:0,42,532 0/0:9,4:13:4.38:0,4,280 0/0:12,3:15:6.40:0,6,309 0/1:8,5:13:10.69:11,0,206 0/0:10,4:14:27.08:0,27,330 0/1:5,3:8:10.60:11,0,160 0/0:11,5:17:8.44:0,8,380 0/0:47,11:58:43.47:0,43,1467 0/0:12,3:15:2.77:1,0,293 0/0:11,2:13:24.07:0,24,294 0/1:14,6:20:19.57:20,0,349 0/0:17,5:22:48.13:0,48,579 0/0:25,4:29:71.69:0,72,824 0/1:17,6:23:49.25:49,0,424 0/0:12,3:16:1.07:6,0,235 0/0:19,7:27:54.17:0,54,671 0/0:14,1:15:18.42:0,18,453 0/0:13,3:16:36.10:0,36,426 0/0:13,3:16:33.08:0,33,396 0/0:9,2:11:18.06:0,18,220 0/0:8,1:9:24.06:0,24,279 0/0:7,3:10:18.05:0,18,214 0/0:10,6:16:2.51:0,3,335 0/1:11,4:15:7.70:8,0,304 0/0:26,1:27:63.16:0,63,724 0/1:16,9:25:25.92:26,0,434 0/0:9,5:14:24.07:0,24,291 0/1:12,6:18:56.59:57,0,269 0/0:16,3:19:42.13:0,42,510 0/0:17,2:19:26.44:0,26,518 0/0:16,2:18:42.12:0,42,499 0/0:15,4:19:15.49:0,15,473 0/0:17,4:22:23.43:0,23,507 0/1:13,4:17:8.15:8,0,436 0/0:12,4:16:2.43:1,0,337 1 151820752 . A C 138.01 . AC=3;AF=0.036;AN=84;BaseQRankSum=-12.020;DP=2046;DS;Dels=0.00;FS=47.208;HRun=3;HaplotypeScore=2.0315;InbreedingCoeff=-0.0690;MQ=57.64;MQ0=0;MQRankSum=0.148;QD=1.00;ReadPosRankSum=-1.953 GT:AD:DP:GQ:PL 0/0:16,24:43:38.42:0,38,377 0/0:19,20:39:45.06:0,45,468 0/0:22,24:46:48.07:0,48,491 0/0:26,51:78:26.47:0,26,503 0/0:31,37:69:71.35:0,71,735 0/0:31,27:60:50.45:0,50,721 0/0:19,16:36:5.64:0,6,354 0/0:31,34:65:32.78:0,33,669 0/0:30,23:53:45.40:0,45,663 0/0:17,16:35:42.07:0,42,444 0/0:20,17:38:42.09:0,42,454 0/0:15,16:31:4.53:0,5,330 0/0:16,25:42:30.04:0,30,314 0/0:25,20:46:42.07:0,42,430 0/0:55,53:109:0.65:8,0,1150 0/0:13,19:32:4.73:0,5,352 0/0:18,24:42:12.47:0,12,397 0/0:19,24:43:24.50:0,25,531 0/1:29,25:55:51:51,0,619 0/0:33,33:67:63.39:0,63,820 0/0:27,22:51:21.86:0,22,691 0/0:18,22:40:36.06:0,36,369 0/0:36,44:81:42.80:0,43,826 0/0:21,26:48:54.09:0,54,567 0/0:24,26:50:25.53:0,26,530 0/0:17,28:45:45.10:0,45,493 0/0:14,15:29:5.38:0,5,282 0/0:18,27:45:42.09:0,42,455 0/0:21,18:41:36.10:0,36,404 0/0:15,20:36:2.72:1,0,229 0/0:15,28:43:33.08:0,33,369 0/0:46,38:84:79.52:0,80,1080 0/0:22,20:42:48.08:0,48,510 0/0:18,26:46:39.06:0,39,413 0/0:19,29:48:42.06:0,42,433 0/0:22,22:45:42.10:0,42,469 0/1:23,25:48:99:132,0,480 0/0:14,13:27:33.01:0,33,321 0/0:36,18:56:81.10:0,81,841 0/0:23,17:40:51.10:0,51,558 0/0:21,16:37:51.14:0,51,570 0/1:13,21:35:27.98:28,0,333 1 151881885 . A C 1894.22 . AC=56;AF=0.933;AN=60;BaseQRankSum=-2.792;DP=70;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0955;InbreedingCoeff=0.1175;MQ=57.63;MQ0=0;MQRankSum=0.675;QD=28.27;ReadPosRankSum=0.913 GT:AD:DP:GQ:PL 1/1:0,2:2:3.01:32,3,0 1/1:0,1:1:3.01:33,3,0 ./. 1/1:0,3:3:9.03:107,9,0 1/1:0,3:3:9.02:92,9,0 1/1:0,4:4:12.03:141,12,0 ./. 1/1:0,2:2:6.02:70,6,0 1/1:0,3:3:6.02:64,6,0 1/1:0,2:2:6.02:65,6,0 1/1:0,1:1:3.01:32,3,0 1/1:0,2:2:6.02:65,6,0 1/1:0,3:3:9.02:101,9,0 1/1:0,1:1:3.01:32,3,0 1/1:0,4:4:12.02:124,12,0 1/1:0,1:1:3.01:32,3,0 1/1:0,4:4:12.03:131,12,0 0/1:1,0:1:1.76:0,3,36 ./. 1/1:0,1:1:3.01:32,3,0 1/1:0,1:1:3.01:32,3,0 1/1:0,4:4:9.03:108,9,0 1/1:0,2:2:6.02:76,6,0 1/1:0,1:1:3.01:33,3,0 ./. ./. ./. ./. 1/1:0,4:4:12.03:126,12,0 1/1:0,1:1:3.01:32,3,0 ./. 0/1:2,3:5:62.85:88,0,63 0/0:1,0:1:3.01:0,3,37 ./. 1/1:0,2:2:6.02:64,6,0 1/1:0,2:2:6.02:65,6,0 1/1:0,3:3:9.02:98,9,0 ./. 1/1:0,2:2:3.01:33,3,0 1/1:0,2:2:6.02:67,6,0 ./. ./. 1 152552197 . G A 861.33 . AC=1;AF=0.012;AN=84;BaseQRankSum=-7.136;DP=4140;DS;Dels=0.00;FS=1.548;HRun=0;HaplotypeScore=3.1373;InbreedingCoeff=-0.0120;MQ=55.89;MQ0=13;MQRankSum=1.152;QD=13.89;ReadPosRankSum=-0.270 GT:AD:DP:GQ:PL 0/0:70,0:70:99:0,193,2331 0/0:81,0:81:99:0,229,2702 0/0:56,0:56:99:0,162,1937 0/0:176,0:176:99:0,503,6449 0/0:176,0:176:99:0,515,6612 0/0:155,0:155:99:0,436,5692 0/0:136,0:136:99:0,400,5154 0/0:142,0:142:99:0,406,5259 0/0:52,0:52:99:0,153,1879 0/0:75,0:76:99:0,220,2654 0/0:60,0:60:99:0,168,2027 0/0:65,0:65:99:0,181,2209 0/0:41,0:41:99:0,123,1414 0/0:81,0:82:99:0,229,2673 0/0:222,0:224:99:0,629,7669 0/0:95,0:95:99:0,265,3195 0/0:84,0:84:99:0,241,2887 0/0:76,0:76:99:0,226,2684 0/0:122,0:122:99:0,337,4022 0/0:130,0:130:99:0,373,4465 0/0:118,0:118:99:0,325,3879 0/0:93,0:93:99:0,259,3110 0/0:197,0:197:99:0,551,7244 0/0:106,0:106:99:0,304,3994 0/0:145,0:145:99:0,418,5475 0/0:120,0:120:99:0,343,4428 0/0:59,0:59:99:0,171,2017 0/0:72,0:72:99:0,205,2480 0/0:67,0:67:99:0,196,2327 0/0:73,0:73:99:0,211,2532 0/0:62,0:62:99:0,177,2112 0/0:133,0:134:99:0,373,4493 0/0:76,0:76:99:0,220,2687 0/0:78,0:78:99:0,220,2658 0/0:86,0:86:99:0,241,2919 0/0:87,0:87:99:0,235,2853 0/0:129,0:129:99:0,349,4248 0/1:30,32:62:99:908,0,819 0/0:76,0:76:99:0,223,2672 0/0:65,0:65:99:0,190,2271 0/0:69,0:69:99:0,198,2303 0/0:67,0:67:99:0,184,2211 1 152552285 . C A 35475.34 . AC=25;AF=0.298;AN=84;BaseQRankSum=-21.944;DP=4100;Dels=0.00;FS=18.506;HRun=0;HaplotypeScore=2.7860;InbreedingCoeff=0.1458;MQ=37.63;MQ0=166;MQRankSum=-0.378;QD=16.80;ReadPosRankSum=0.824 GT:AD:DP:GQ:PL 0/1:44,38:82:99:1035,0,1193 0/0:73,0:73:99:0,192,2168 0/0:75,0:75:99:0,196,2254 0/0:153,0:153:99:0,439,5219 0/0:114,0:114:99:0,307,3660 0/0:116,1:117:99:0,266,3526 0/0:92,0:92:99:0,220,2725 0/1:56,50:106:99:1249,0,1243 0/0:65,0:65:99:0,165,1938 0/0:64,0:64:99:0,165,1907 0/0:72,1:73:99:0,165,2169 0/0:66,0:66:99:0,187,2172 0/1:37,34:72:99:858,0,929 0/0:83,0:83:99:0,223,2522 0/1:115,133:248:99:3361,0,2676 1/1:4,101:105:99:3210,283,0 0/1:28,41:69:99:993,0,661 0/0:69,0:69:99:0,183,2141 0/0:136,0:137:99:0,331,3744 0/1:74,86:160:99:2077,0,1768 0/0:132,1:135:99:0,325,3665 0/0:98,0:99:99:0,247,2883 0/1:80,88:168:99:2391,0,2016 0/1:38,24:62:99:646,0,1072 1/1:3,96:99:99:2994,232,0 0/0:100,0:101:99:0,250,3000 0/0:65,0:65:99:0,174,2046 0/1:38,30:69:99:755,0,885 0/1:36,29:65:99:632,0,674 0/0:76,0:76:99:0,211,2517 0/0:79,0:79:99:0,201,2292 0/1:86,77:163:99:1956,0,1932 0/0:83,0:83:99:0,214,2501 0/0:83,2:86:99:0,189,2516 0/1:43,38:82:99:847,0,1142 0/1:38,37:75:99:830,0,857 1/1:7,142:150:99:4398,388,0 1/1:1,80:81:99:2317,208,0 0/1:42,42:84:99:1079,0,959 0/1:40,36:76:99:1031,0,940 0/0:83,0:83:99:0,208,2412 1/1:3,92:95:99:2817,247,0 1 152573363 . C G 11.95 . AC=2;AF=0.030;AN=66;BaseQRankSum=-12.748;DP=1821;Dels=0.00;FS=776.695;HRun=1;HaplotypeScore=2.3050;InbreedingCoeff=-0.0867;MQ=58.60;MQ0=0;MQRankSum=-0.775;QD=0.14;ReadPosRankSum=-12.114 GT:AD:DP:GQ:PL 0/0:33,7:40:21.58:0,22,956 0/0:44,18:62:29.75:0,30,1250 0/0:32,8:40:0.49:9,0,823 0/0:68,14:82:74.63:0,75,2299 0/0:122,38:160:99:0,185,4064 0/0:87,29:116:99:0,126,2786 0/0:81,22:103:99:0,182,2658 0/0:43,11:54:99:0,117,1525 0/0:54,17:71:28.50:0,29,1641 0/0:43,14:57:31.94:0,32,1400 0/0:54,14:68:99:0,107,1585 0/0:25,8:33:38.62:0,39,781 0/0:28,5:33:39.60:0,40,814 ./. 0/0:84,16:100:53.26:0,53,2757 0/0:1,0:1:3.01:0,3,38 0/0:28,8:36:41.26:0,41,875 0/0:27,3:30:42.74:0,43,878 0/0:44,5:50:21.72:0,22,1180 ./. 0/0:48,11:59:87.23:0,87,1366 0/0:34,5:39:87.26:0,87,1053 ./. 0/0:1,0:1:3.01:0,3,40 ./. 0/1:30,17:47:47.84:48,0,962 0/0:49,9:58:99:0,110,1558 0/0:30,4:34:49.70:0,50,936 0/0:22,5:27:1.02:6,0,597 0/0:75,15:90:75.03:0,75,2309 0/0:61,21:82:80.75:0,81,1905 ./. 0/0:83,24:107:90.22:0,90,2661 0/0:28,4:32:53.54:0,54,880 0/0:3,0:3:9.02:0,9,106 0/0:32,10:42:20.41:0,20,925 ./. ./. ./. 0/1:25,11:36:18.47:18,0,737 0/0:20,8:28:0.99:6,0,565 ./. 1 152586520 . T G 94.22 . AC=2;AF=0.032;AN=62;BaseQRankSum=-21.357;DP=2136;Dels=0.00;FS=271.635;HRun=2;HaplotypeScore=2.0395;InbreedingCoeff=-0.0496;MQ=59.14;MQ0=0;MQRankSum=-1.542;QD=0.82;ReadPosRankSum=-15.135 GT:AD:DP:GQ:PL 0/0:33,4:39:63.56:0,64,976 0/0:71,13:84:99:0,141,2150 0/0:37,6:43:95.74:0,96,1111 0/0:74,28:102:99:0,165,2189 0/0:128,48:176:99:0,176,3692 0/0:118,24:142:99:0,217,3282 0/0:95,21:117:99:0,175,2683 0/0:60,14:74:49.84:0,50,1607 0/0:59,18:77:99:0,111,1764 0/0:62,25:87:1.85:3,0,1755 0/0:49,9:58:55.45:0,55,1361 0/1:36,12:48:90.05:90,0,868 0/0:24,8:32:27.67:0,28,642 ./. 0/0:109,26:135:99:0,131,2977 ./. 0/0:43,6:49:78.80:0,79,1262 0/0:35,3:38:62.84:0,63,1061 0/0:50,14:64:14.61:0,15,1395 ./. 0/1:45,22:67:63.29:63,0,1132 0/0:46,8:54:63.04:0,63,1248 ./. ./. ./. 0/0:64,7:71:99:0,168,1916 0/0:47,13:60:95.08:0,95,1331 0/0:36,19:55:21.35:0,21,1008 0/0:25,6:32:14.99:0,15,705 0/0:74,16:90:97.88:0,98,2089 0/0:60,12:72:99:0,110,1736 ./. 0/0:88,14:103:99:0,180,2704 0/0:32,3:36:54.61:0,55,919 0/0:3,0:3:6.02:0,6,83 0/0:28,11:39:24.82:0,25,758 ./. ./. ./. 0/0:39,8:47:99:0,102,1188 0/0:35,7:42:76.55:0,77,1084 ./. 1 152944389 . G A 1103.53 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.393;DP=3703;DS;Dels=0.00;FS=5.158;HRun=0;HaplotypeScore=3.4594;InbreedingCoeff=-0.0120;MQ=58.66;MQ0=0;MQRankSum=2.221;QD=11.50;ReadPosRankSum=-0.582 GT:AD:DP:GQ:PL 0/0:65,1:66:99:0,155,2102 0/0:67,1:69:99:0,156,2124 0/0:63,0:63:99:0,177,2002 0/0:151,0:151:99:0,436,5332 0/0:140,0:140:99:0,403,4999 0/0:125,0:125:99:0,358,4459 0/1:53,42:95:99:1150,0,1600 0/0:103,1:104:99:0,267,3545 0/0:60,0:60:99:0,177,2071 0/0:71,0:71:99:0,202,2317 0/0:66,0:66:99:0,180,2048 0/0:55,0:55:99:0,150,1712 0/0:63,0:63:99:0,180,2054 0/0:71,0:71:99:0,205,2326 0/0:181,1:184:99:0,439,5327 0/0:84,0:84:99:0,244,2756 0/0:75,0:75:99:0,211,2424 0/0:58,0:58:99:0,165,1906 0/0:96,0:96:99:0,262,2983 0/0:143,0:143:99:0,418,4759 0/0:111,0:111:99:0,286,3343 0/0:88,0:88:99:0,256,2862 0/0:153,0:153:99:0,442,5461 0/0:96,1:97:99:0,248,3451 0/0:101,0:101:99:0,286,3516 0/0:109,1:110:99:0,278,3831 0/0:62,0:62:99:0,165,1872 0/0:77,0:77:99:0,198,2258 0/0:66,0:66:99:0,193,2186 0/0:78,0:78:99:0,226,2527 0/0:57,0:57:99:0,162,1838 0/0:123,0:123:99:0,337,3902 0/0:93,0:93:99:0,268,3033 0/0:67,0:67:99:0,177,2047 0/0:62,0:62:99:0,180,2026 0/0:70,0:70:99:0,199,2264 0/0:106,0:107:99:0,292,3297 0/0:60,0:60:99:0,162,1830 0/0:84,1:85:99:0,241,2754 0/0:58,0:59:99:0,174,1976 0/0:65,1:66:99:0,151,2116 0/0:70,1:71:99:0,176,2308 1 152944499 . C T 1622.06 . 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C T 64183.23 . 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T C 82086.50 . 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C T 69095.46 . 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C T 70543.66 . AC=38;AF=0.452;AN=84;BaseQRankSum=22.073;DP=5888;DS;Dels=0.00;FS=6.464;HRun=0;HaplotypeScore=5.9857;InbreedingCoeff=-0.1533;MQ=51.81;MQ0=120;MQRankSum=-31.943;QD=16.86;ReadPosRankSum=2.727 GT:AD:DP:GQ:PL 0/0:94,0:94:99:0,253,2778 0/1:47,58:106:99:1409,0,1148 1/1:0,66:66:99:2109,186,0 0/1:124,116:240:99:2902,0,3070 0/0:230,0:234:99:0,604,7064 0/0:199,0:204:99:0,505,6016 0/0:179,0:181:99:0,457,5309 0/0:203,3:207:99:0,493,6041 0/1:56,51:109:99:1229,0,1386 0/1:52,49:101:99:1283,0,1396 0/0:95,0:96:99:0,229,2658 0/1:43,43:87:99:1008,0,1166 0/1:47,41:89:99:1045,0,1127 0/1:64,43:109:99:1033,0,1591 0/1:130,117:250:99:2854,0,3114 1/1:0,132:133:99:4042,358,0 0/0:127,2:132:99:0,305,3611 0/1:58,34:92:99:832,0,1383 0/0:199,1:204:99:0,499,5577 0/1:95,122:220:99:3156,0,2009 0/1:85,120:206:99:3141,0,1929 0/1:66,71:138:99:1870,0,1602 1/1:1,229:233:99:6932,559,0 1/1:0,106:107:99:3268,277,0 0/1:100,83:186:99:2189,0,2432 1/1:0,109:112:99:3377,292,0 0/1:34,40:74:99:1032,0,799 0/1:66,39:106:99:950,0,1679 0/1:35,63:98:99:1740,0,694 0/0:99,1:101:99:0,239,3048 0/1:50,60:110:99:1520,0,1277 1/1:2,238:240:99:7454,608,0 0/1:80,72:153:99:1788,0,1896 0/1:52,53:105:99:1384,0,1203 0/1:41,48:90:99:1326,0,918 0/0:131,1:132:99:0,329,3864 0/1:110,95:210:99:2398,0,2708 0/0:116,0:119:99:0,286,3175 1/1:1,109:111:99:3536,307,0 0/1:63,43:107:99:1025,0,1508 0/1:43,39:84:99:1021,0,1041 0/1:46,64:112:99:1690,0,919 1 153012765 . T C 936.94 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.523;DP=5556;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.4649;InbreedingCoeff=-0.0120;MQ=22.34;MQ0=1824;MQRankSum=0.708;QD=4.93;ReadPosRankSum=-0.496 GT:AD:DP:GQ:PL 0/0:92,0:92:99:0,138,1371 0/0:81,0:82:99:0,108,1113 0/0:68,0:69:96.09:0,96,1010 0/0:245,0:245:99:0,423,4208 0/0:250,0:250:99:0,426,4280 0/0:240,0:241:99:0,336,3445 0/1:118,71:190:99:983,0,1306 0/0:210,0:212:99:0,309,3146 0/0:87,0:87:99:0,120,1097 0/0:93,0:94:99:0,129,1299 0/0:78,0:78:99:0,117,1192 0/0:86,0:86:99:0,114,1184 0/0:77,0:78:87:0,87,856 0/0:81,0:81:99:0,135,1354 0/0:224,0:226:99:0,363,3764 0/0:85,0:86:99:0,117,1207 0/0:88,0:88:99:0,123,1196 0/0:91,0:91:99:0,114,1087 0/0:146,0:148:99:0,171,1685 0/0:177,1:180:99:0,264,2671 0/0:196,0:196:99:0,288,2930 0/0:109,0:110:99:0,132,1383 0/0:249,0:250:99:0,372,3609 0/0:210,1:211:99:0,261,2924 0/0:243,0:246:99:0,399,4170 0/0:180,0:181:99:0,228,2282 0/0:83,1:84:99:0,123,1213 0/0:97,0:98:99:0,132,1317 0/0:92,0:92:99:0,108,1033 0/0:78,0:79:99:0,105,1076 0/0:104,0:104:99:0,165,1658 0/0:185,0:187:99:0,318,3203 0/0:126,0:128:99:0,228,2302 0/0:103,0:103:99:0,138,1266 0/0:83,0:84:99:0,108,1066 0/0:113,0:114:99:0,132,1309 0/0:158,0:159:99:0,222,2295 0/0:80,0:80:99:0,126,1274 0/0:96,0:97:99:0,156,1626 0/0:86,0:87:99:0,99,969 0/0:69,0:69:99:0,120,1224 0/0:93,0:93:99:0,117,1232 1 153043133 . T G 17.11 . AC=2;AF=0.024;AN=84;BaseQRankSum=-36.806;DP=6566;DS;Dels=0.00;FS=1425.092;HRun=4;HaplotypeScore=5.8438;InbreedingCoeff=-0.0430;MQ=38.92;MQ0=983;MQRankSum=-9.833;QD=0.08;ReadPosRankSum=-24.322 GT:AD:DP:GQ:PL 0/0:93,47:141:32.55:0,33,2062 0/0:80,34:115:61.81:0,62,1728 0/0:71,23:95:99:0,100,1533 0/0:167,83:250:99:0,130,3389 0/0:158,83:243:99:0,248,3772 0/0:170,60:231:99:0,289,4304 0/0:148,82:230:99:0,246,3434 0/0:171,72:245:99:0,235,4282 0/0:66,34:100:1.27:0,1,1422 0/0:91,35:127:99:0,166,2261 0/1:57,34:91:35.61:36,0,1318 0/0:83,24:107:67.74:0,68,1957 0/0:64,25:90:78.32:0,78,1395 0/0:81,31:113:6.75:0,7,1694 0/0:180,61:242:99:0,242,3901 0/0:75,38:113:99:0,106,1787 0/0:88,37:126:99:0,101,1987 0/0:85,32:117:88.77:0,89,2016 0/0:149,54:204:99:0,210,3429 0/0:184,59:250:99:0,323,4255 0/0:174,50:225:99:0,213,4414 0/0:102,40:142:99:0,149,2322 0/0:156,83:241:99:0,168,3569 0/0:170,58:230:99:0,285,4206 0/0:172,59:233:99:0,189,3839 0/0:147,53:201:99:0,264,3671 0/0:72,24:99:53.01:0,53,1700 0/0:68,24:93:70.82:0,71,1519 0/0:83,34:117:0.64:8,0,1872 0/0:69,35:104:99:0,122,2123 0/0:75,41:116:99:0,123,1878 0/0:194,51:248:99:0,325,4657 0/0:105,33:138:99:0,174,2505 0/0:87,40:127:99:0,100,2161 0/0:83,28:111:77.04:0,77,1958 0/0:94,44:140:80.11:0,80,2063 0/0:130,43:174:83.43:0,83,2892 0/1:85,39:126:42.35:42,0,1716 0/0:86,40:127:79.98:0,80,1995 0/0:93,34:127:99:0,143,2330 0/0:80,28:108:99:0,127,1814 0/0:85,23:108:91.46:0,91,1824 1 153043189 . G A 1202.07 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.326;DP=6849;DS;Dels=0.00;FS=5.482;HRun=0;HaplotypeScore=2.3027;InbreedingCoeff=-0.0244;MQ=20.52;MQ0=3338;MQRankSum=-1.069;QD=6.16;ReadPosRankSum=-1.539 GT:AD:DP:GQ:PL 0/0:138,0:138:99:0,144,1526 0/0:133,0:133:99:0,150,1600 0/0:92,0:93:99:0,120,1266 0/0:248,1:249:99:0,352,3935 0/0:250,0:250:99:0,370,4192 0/0:240,0:240:99:0,340,3728 0/0:243,0:243:99:0,343,3864 0/0:248,0:249:99:0,322,3558 0/0:113,0:113:99:0,105,1080 0/0:124,0:125:99:0,141,1518 0/0:104,0:104:99:0,114,1248 0/0:121,0:121:99:0,153,1651 0/0:125,1:126:89.61:0,90,1212 0/0:136,0:137:99:0,180,1931 0/0:243,0:245:99:0,310,3328 0/0:118,0:118:99:0,165,1825 0/0:131,0:131:99:0,141,1463 0/0:113,0:113:99:0,168,1784 0/0:220,0:220:99:0,262,2731 0/0:238,0:238:99:0,322,3528 0/0:228,0:228:99:0,256,2729 0/0:147,0:149:99:0,129,1375 0/0:250,0:250:99:0,379,4307 0/0:238,0:238:99:0,334,3690 0/0:240,0:241:99:0,319,3485 0/0:192,1:193:99:0,238,2692 0/1:60,33:93:99:520,0,750 0/0:118,0:119:99:0,165,1777 0/1:60,42:102:99:745,0,295 0/0:103,0:103:99:0,120,1315 0/0:110,0:110:99:0,141,1505 0/0:237,0:237:99:0,283,3042 0/0:131,0:131:99:0,168,1834 0/0:120,0:120:99:0,132,1435 0/0:128,1:129:99:0,114,1533 0/0:143,0:143:99:0,114,1221 0/0:243,0:245:99:0,307,3310 0/0:150,0:150:99:0,183,1977 0/0:122,0:123:99:0,165,1797 0/0:122,1:123:99:0,111,1165 0/0:110,0:112:99:0,141,1527 0/0:124,0:124:99:0,129,1411 1 153043257 . G A 174.70 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.263;DP=5303;DS;Dels=0.00;FS=2.914;HRun=0;HaplotypeScore=1.2195;InbreedingCoeff=-0.0121;MQ=13.94;MQ0=3694;MQRankSum=-0.890;QD=1.46;ReadPosRankSum=0.030 GT:AD:DP:GQ:PL 0/1:86,34:120:99:221,0,401 0/0:75,0:75:45.10:0,45,489 0/0:70,0:70:33.05:0,33,350 0/0:250,0:250:99:0,153,1683 0/0:250,0:250:99:0,120,1237 0/0:245,0:246:99:0,138,1489 0/0:163,0:183:99:0,120,1265 0/0:212,0:212:81.20:0,81,902 0/0:86,0:86:51.11:0,51,534 0/0:84,0:84:54.14:0,54,600 0/0:79,0:79:42.12:0,42,471 0/0:84,0:84:45.09:0,45,472 0/0:80,0:80:33.06:0,33,349 0/0:94,0:94:51.11:0,51,547 0/0:243,0:243:99:0,165,1792 0/0:95,0:95:87.16:0,87,913 0/0:107,0:107:75.17:0,75,808 0/0:100,0:100:60.13:0,60,633 0/0:157,0:157:99:0,99,1054 0/0:156,0:156:99:0,108,1139 0/0:146,0:146:78.18:0,78,831 0/0:86,0:86:66.16:0,66,718 0/0:237,0:237:99:0,147,1613 0/0:173,0:173:90.21:0,90,994 0/0:217,0:218:99:0,105,1136 0/0:143,0:144:72.14:0,72,777 0/0:66,1:67:39.09:0,39,429 0/0:94,0:94:45.10:0,45,478 0/0:81,0:81:51.12:0,51,566 0/0:83,0:83:42.09:0,42,456 0/0:92,0:93:57.13:0,57,622 0/0:151,0:151:99:0,108,1181 0/0:88,0:88:66.15:0,66,713 0/0:73,0:73:66.15:0,66,719 0/0:83,0:83:33.09:0,33,372 0/0:128,0:128:66.13:0,66,684 0/0:156,0:157:90.18:0,90,940 0/0:90,0:90:45.07:0,45,453 0/0:83,0:83:48.11:0,48,534 0/0:97,0:97:63.15:0,63,672 0/0:81,0:81:48.11:0,48,516 0/0:79,0:79:57.13:0,57,618 1 153066072 . T C 1299.58 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.389;DP=7600;DS;Dels=0.00;FS=61.471;HRun=0;HaplotypeScore=6.1536;InbreedingCoeff=-0.0244;MQ=49.18;MQ0=36;MQRankSum=-16.475;QD=5.46;ReadPosRankSum=-2.310 GT:AD:DP:GQ:PL 0/0:145,0:147:99:0,409,4879 0/0:134,3:137:99:0,279,4273 0/0:129,4:133:99:0,279,4262 0/0:249,1:250:99:0,683,8655 0/0:249,1:250:99:0,710,8772 0/0:250,0:250:99:0,701,8878 0/0:234,0:235:99:0,650,8094 0/0:249,0:250:99:0,707,8804 0/0:167,4:172:99:0,329,5118 0/0:125,1:126:99:0,352,4129 0/0:122,0:122:99:0,331,3914 0/0:140,4:145:99:0,267,4409 0/0:122,0:122:99:0,343,4088 0/0:137,4:141:99:0,262,4426 0/0:249,0:250:99:0,707,8265 0/0:164,6:170:99:0,329,5151 0/0:150,0:150:99:0,430,5062 0/0:132,0:132:99:0,358,4270 0/0:222,0:222:99:0,620,7400 0/0:249,0:249:99:0,689,8126 0/0:226,1:229:99:0,571,7081 0/0:166,3:169:99:0,371,5279 0/0:242,8:250:99:0,513,8115 0/0:242,8:250:99:0,437,7942 0/0:247,3:250:99:0,604,8175 0/0:225,5:230:99:0,554,7374 0/0:121,1:122:99:0,306,3942 0/0:148,4:153:99:0,327,4839 0/0:122,1:123:99:0,316,4101 0/0:142,0:142:99:0,385,4614 0/0:147,2:149:99:0,348,4858 0/0:238,3:243:99:0,589,7900 0/0:165,3:169:99:0,366,5313 0/0:142,4:146:99:0,269,4589 0/0:166,3:169:99:0,393,5643 0/0:204,1:205:99:0,535,6727 0/0:240,4:245:99:0,629,7897 0/0:148,0:148:99:0,394,4675 0/0:152,5:157:99:0,281,4832 0/1:75,46:121:99:530,0,2255 0/1:71,46:117:99:832,0,2097 0/0:156,3:160:99:0,381,5164 1 153271621 . G A 1298.28 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.892;DP=2461;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.2374;InbreedingCoeff=-0.0244;MQ=59.31;MQ0=0;MQRankSum=0.689;QD=12.36;ReadPosRankSum=1.190 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,138,1755 0/0:49,0:49:99:0,132,1680 0/0:33,0:35:84.27:0,84,1095 0/0:100,0:100:99:0,271,3562 0/0:74,0:74:99:0,205,2701 0/0:82,0:82:99:0,214,2844 0/0:41,0:41:99:0,108,1401 0/0:59,0:60:99:0,163,2158 0/0:47,0:48:99:0,129,1602 0/0:41,0:42:99:0,108,1347 0/0:44,0:45:99:0,123,1537 0/0:42,0:42:99:0,114,1430 0/0:31,0:31:87.26:0,87,1080 0/0:36,0:36:99:0,102,1296 0/0:187,0:188:99:0,466,5863 0/0:39,0:39:99:0,111,1346 0/0:49,0:49:99:0,138,1741 0/0:49,0:49:99:0,123,1561 0/0:74,0:74:99:0,196,2427 0/0:88,0:88:99:0,229,2842 0/0:71,1:73:99:0,154,2273 0/0:49,0:49:99:0,144,1826 0/0:101,0:101:99:0,265,3483 0/0:63,0:63:99:0,168,2176 0/0:75,0:75:99:0,202,2600 0/0:64,0:64:99:0,159,2088 0/0:35,0:35:90.28:0,90,1148 0/0:44,0:44:99:0,120,1519 0/0:39,0:39:99:0,108,1349 0/1:21,20:41:99:599,0,573 0/0:44,0:44:99:0,123,1558 0/0:98,0:98:99:0,256,3275 0/1:35,29:64:99:762,0,1034 0/0:52,0:52:99:0,138,1748 0/0:46,0:46:99:0,123,1532 0/0:37,0:37:99:0,99,1256 0/0:80,0:80:99:0,220,2718 0/0:57,1:58:99:0,119,1842 0/0:40,0:40:99:0,114,1421 0/0:47,0:47:99:0,129,1597 0/0:45,0:45:99:0,123,1537 0/0:42,0:42:99:0,120,1527 1 153277423 . C T 30078.68 . AC=30;AF=0.357;AN=84;BaseQRankSum=-15.711;DP=2817;Dels=0.00;FS=5.271;HRun=1;HaplotypeScore=0.9187;InbreedingCoeff=-0.0370;MQ=59.14;MQ0=0;MQRankSum=-1.850;QD=18.00;ReadPosRankSum=-0.272 GT:AD:DP:GQ:PL 0/1:27,26:53:99:714,0,863 1/1:0,50:50:99:1747,138,0 0/1:32,34:66:99:1034,0,984 0/1:48,43:91:99:1344,0,1396 0/0:98,0:98:99:0,271,3654 0/0:72,0:72:99:0,211,2818 0/1:30,30:60:99:959,0,924 0/0:89,0:90:99:0,250,3329 1/1:0,54:54:99:1898,150,0 0/1:28,21:49:99:618,0,906 0/1:17,23:40:99:720,0,495 0/1:27,23:50:99:718,0,827 0/0:41,0:41:99:0,120,1526 1/1:0,45:45:99:1673,135,0 0/1:127,94:221:99:2697,0,3851 0/1:23,24:48:99:756,0,696 0/0:56,0:56:99:0,159,2010 0/1:25,18:43:99:522,0,775 0/0:74,0:74:99:0,214,2661 0/0:108,0:108:99:0,292,3722 0/1:51,42:94:99:1262,0,1479 0/0:53,0:53:99:0,156,1997 1/1:0,104:104:99:3732,286,0 0/0:73,0:74:99:0,208,2766 0/0:71,1:72:99:0,174,2734 0/0:60,1:61:99:0,130,2238 0/0:44,1:45:99:0,126,1627 0/0:67,0:67:99:0,193,2423 0/0:45,0:45:99:0,129,1646 0/1:28,34:62:99:1095,0,865 0/0:58,0:58:99:0,163,2074 0/1:42,45:87:99:1281,0,1350 0/1:26,23:49:99:617,0,799 0/1:33,25:58:99:751,0,965 0/1:27,22:49:99:670,0,802 0/0:68,0:68:99:0,190,2419 0/1:46,34:80:99:955,0,1454 0/1:25,36:61:99:1065,0,731 0/1:29,17:46:99:483,0,911 0/1:31,20:51:99:603,0,1021 0/0:64,0:64:99:0,184,2327 1/1:1,59:60:99:2166,141,0 1 153279576 . C T 663.78 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.374;DP=947;Dels=0.00;FS=0.715;HRun=0;HaplotypeScore=0.6661;InbreedingCoeff=-0.0245;MQ=57.36;MQ0=0;MQRankSum=0.844;QD=10.21;ReadPosRankSum=0.767 GT:AD:DP:GQ:PL 0/0:18,0:18:51.13:0,51,590 0/0:18,0:18:51.14:0,51,586 0/0:19,0:19:54.13:0,54,592 0/1:16,15:31:99:363,0,497 0/1:20,14:34:99:364,0,611 0/0:20,0:20:51.15:0,51,624 0/0:27,0:27:66.18:0,66,817 0/0:24,0:24:63.19:0,63,795 0/0:17,0:17:51.14:0,51,584 0/0:12,0:12:33.08:0,33,358 0/0:20,0:20:51.12:0,51,587 0/0:18,0:18:54.14:0,54,613 0/0:11,0:11:30.07:0,30,323 0/0:26,0:26:66.18:0,66,769 0/0:85,0:86:99:0,217,2521 0/0:15,0:15:36.09:0,36,413 0/0:15,0:15:42.10:0,42,455 0/0:16,0:16:39.11:0,39,458 0/0:37,0:37:99:0,105,1177 0/0:28,0:28:78.21:0,78,891 0/0:21,0:21:45.12:0,45,524 0/0:28,0:28:81.21:0,81,904 0/0:37,0:37:99:0,99,1209 0/0:9,0:9:21.05:0,21,242 0/0:23,0:23:60.19:0,60,764 0/0:15,0:15:42.13:0,42,515 0/0:13,0:13:33.06:0,33,363 0/0:10,0:10:27.06:0,27,292 0/0:18,0:18:54.11:0,54,581 0/0:18,0:18:48.14:0,48,554 0/0:19,0:19:54.15:0,54,626 0/0:38,0:38:96.25:0,96,1124 0/0:21,0:21:57.14:0,57,652 0/0:20,0:20:51.14:0,51,597 0/0:28,0:28:75.19:0,75,882 0/0:17,0:17:51.13:0,51,569 0/0:27,0:27:72.18:0,72,796 0/0:15,0:16:45.10:0,45,503 0/0:16,0:16:42.12:0,42,478 0/0:23,0:23:60.16:0,60,689 0/0:15,0:15:39.10:0,39,457 0/0:23,0:23:63.17:0,63,722 1 153279598 . C T 452.61 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.238;DP=913;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9146;InbreedingCoeff=-0.0245;MQ=57.38;MQ0=0;MQRankSum=1.962;QD=12.93;ReadPosRankSum=0.173 GT:AD:DP:GQ:PL 0/0:17,0:17:45.14:0,45,572 0/0:18,0:18:54.16:0,54,656 0/0:19,0:19:45.14:0,45,572 0/0:27,0:27:81.22:0,81,1046 0/0:31,0:31:90.29:0,90,1198 0/0:17,0:17:48.16:0,48,644 0/0:29,0:29:81.26:0,81,1070 0/0:23,0:23:54.16:0,54,717 0/0:21,0:21:48.15:0,48,599 0/0:15,0:15:39.12:0,39,495 0/0:22,0:22:51.16:0,51,664 0/0:18,0:18:48.13:0,48,590 0/0:12,0:12:30.10:0,30,384 0/0:23,0:23:54.17:0,54,721 0/0:81,0:81:99:0,208,2635 0/0:16,0:16:39.12:0,39,478 0/0:12,0:12:30.09:0,30,386 0/0:14,0:14:39.12:0,39,492 0/0:36,0:36:90.26:0,90,1126 0/0:21,0:21:57.18:0,57,706 0/0:27,0:27:69.21:0,69,860 0/0:23,0:23:69.22:0,69,860 0/0:32,0:32:90.28:0,90,1166 0/0:9,0:9:21.04:0,21,264 0/0:27,0:27:72.23:0,72,966 0/0:10,0:10:30.10:0,30,401 0/0:13,0:13:36.11:0,36,447 0/0:13,0:13:36.11:0,36,440 0/0:20,0:20:57.17:0,57,703 0/0:19,0:19:48.15:0,48,607 0/0:22,0:22:57.15:0,57,687 0/0:37,0:37:90.28:0,90,1158 0/0:24,0:24:66.21:0,66,836 0/0:15,0:15:39.12:0,39,508 0/0:25,0:25:69.21:0,69,853 0/0:14,0:14:39.12:0,39,495 0/0:25,0:25:69.20:0,69,874 0/0:20,0:20:48.15:0,48,615 0/0:12,0:12:36.11:0,36,443 0/1:10,14:24:99:376,0,284 0/1:6,5:11:99:139,0,198 0/0:19,0:19:51.15:0,51,637 1 153279696 . C T 380.20 . AC=3;AF=0.036;AN=84;BaseQRankSum=2.749;DP=531;Dels=0.00;FS=6.727;HRun=0;HaplotypeScore=0.4973;InbreedingCoeff=0.0098;MQ=59.16;MQ0=0;MQRankSum=-1.254;QD=10.86;ReadPosRankSum=-1.307 GT:AD:DP:GQ:PL 0/0:12,0:13:36.09:0,36,388 0/0:7,0:7:21.05:0,21,226 0/0:8,0:8:21.05:0,21,221 0/0:25,0:25:66.16:0,66,768 0/0:26,0:26:66.18:0,66,772 0/0:18,0:18:48.14:0,48,568 0/0:15,0:15:39.08:0,39,440 0/0:16,0:16:48.11:0,48,539 0/0:11,0:11:27.06:0,27,287 0/0:7,0:7:21.05:0,21,227 0/0:13,0:13:36.09:0,36,397 0/0:9,0:9:27.07:0,27,300 0/0:4,0:4:9.02:0,9,96 0/0:9,0:9:24.05:0,24,260 0/0:27,0:27:78.20:0,78,856 0/0:9,0:9:24.06:0,24,279 0/0:7,0:7:21.05:0,21,235 0/0:5,0:5:15.03:0,15,153 0/0:18,0:18:42.11:0,42,462 0/0:21,0:21:54.14:0,54,631 0/0:15,0:15:39.10:0,39,425 0/0:13,0:13:33.08:0,33,368 0/0:26,0:26:72.20:0,72,829 0/0:8,0:8:18.06:0,18,233 0/0:12,0:12:33.10:0,33,402 0/0:17,0:17:42.12:0,42,498 0/0:9,0:9:24.06:0,24,258 0/0:6,0:6:18.03:0,18,184 0/0:6,0:6:18.05:0,18,199 0/0:17,0:17:42.09:0,42,480 0/0:8,0:8:24.06:0,24,255 0/0:17,0:17:45.11:0,45,501 0/1:7,5:12:99:141,0,166 0/0:7,0:7:21.05:0,21,224 0/0:12,0:12:36.10:0,36,398 0/0:10,0:10:30.04:0,30,300 0/1:1,6:7:10.49:188,0,10 0/1:11,5:16:99:126,0,311 0/0:17,0:17:45.08:0,45,466 0/0:9,0:9:27.04:0,27,282 0/0:10,0:10:30.08:0,30,327 0/0:9,0:9:27.05:0,27,289 1 153317723 . T C 3913.38 . 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T G 44321.74 . 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G A 2578.18 . AC=6;AF=0.071;AN=84;BaseQRankSum=1.076;DP=1948;Dels=0.00;FS=2.778;HRun=0;HaplotypeScore=1.2092;InbreedingCoeff=-0.0769;MQ=59.09;MQ0=0;MQRankSum=1.156;QD=10.88;ReadPosRankSum=-2.128 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,105,1282 0/0:49,0:49:99:0,126,1584 0/0:51,0:51:99:0,135,1685 0/0:36,0:36:96.30:0,96,1249 0/0:34,0:34:87.28:0,87,1166 0/0:32,0:32:81.26:0,81,1079 0/1:11,14:25:99:423,0,292 0/0:22,0:22:57.15:0,57,720 0/1:22,20:42:99:494,0,631 0/0:37,0:37:96.29:0,96,1200 0/1:17,13:30:99:339,0,470 0/0:59,0:59:99:0,150,1838 0/0:37,0:37:90.26:0,90,1103 0/0:37,0:37:99:0,102,1249 0/0:195,0:195:99:0,448,5668 0/0:36,0:36:93.28:0,93,1159 0/0:45,0:45:99:0,111,1356 0/0:49,0:49:99:0,126,1505 0/0:66,0:66:99:0,162,1970 0/0:79,0:79:99:0,184,2342 0/0:87,0:87:99:0,199,2460 0/0:42,0:43:93.25:0,93,1178 0/0:34,0:34:84.27:0,84,1137 0/0:22,0:22:57.17:0,57,723 0/0:22,0:22:51.16:0,51,689 0/0:27,0:27:60.15:0,60,790 0/0:37,0:37:93.27:0,93,1144 0/0:60,0:61:99:0,141,1778 0/0:44,0:44:99:0,117,1430 0/0:48,0:48:99:0,120,1471 0/0:34,0:34:78.23:0,78,990 0/0:75,0:75:99:0,162,2095 0/1:16,8:24:99:219,0,474 0/0:32,0:32:81.23:0,81,995 0/0:33,0:33:84.23:0,84,1032 0/0:42,0:42:99:0,111,1337 0/1:48,26:74:99:591,0,1230 0/1:21,21:42:99:617,0,526 0/0:49,0:49:99:0,123,1469 0/0:41,0:41:99:0,111,1336 0/0:40,1:41:68.33:0,68,1237 0/0:33,0:33:81.24:0,81,997 1 153431406 . C G 163986.26 . 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G A 327.06 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.501;DP=2048;Dels=0.00;FS=5.167;HRun=0;HaplotypeScore=1.7041;InbreedingCoeff=-0.0120;MQ=58.75;MQ0=0;MQRankSum=1.963;QD=8.84;ReadPosRankSum=2.838 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,117,1365 0/0:36,0:36:99:0,102,1175 0/0:34,0:35:87.23:0,87,989 0/0:60,0:60:99:0,165,2013 0/0:74,1:75:99:0,182,2435 0/0:50,0:50:99:0,120,1470 0/0:44,0:44:99:0,117,1436 0/0:46,0:46:99:0,117,1444 0/0:51,0:51:99:0,129,1522 0/0:34,0:34:90.22:0,90,1030 0/0:39,0:39:99:0,105,1168 0/0:36,0:36:96.24:0,96,1121 0/0:37,0:38:96.21:0,96,1082 0/0:48,0:48:99:0,135,1537 0/0:154,0:154:99:0,388,4549 0/1:21,16:37:99:373,0,520 0/0:51,0:51:99:0,129,1476 0/0:37,0:37:96.25:0,96,1100 0/0:80,0:80:99:0,208,2445 0/0:67,0:67:99:0,168,1987 0/0:62,0:62:99:0,171,1941 0/0:38,0:38:96.24:0,96,1125 0/0:72,0:74:99:0,181,2222 0/0:29,0:29:78.15:0,78,894 0/0:45,0:45:99:0,123,1489 0/0:62,0:62:99:0,156,1905 0/0:30,0:30:78.19:0,78,907 0/0:37,0:37:99:0,111,1269 0/0:31,0:31:87.21:0,87,966 0/0:43,0:43:99:0,111,1258 0/0:44,0:44:99:0,114,1339 0/0:56,0:57:99:0,153,1763 0/0:42,0:42:99:0,120,1361 0/0:49,0:49:99:0,138,1550 0/0:32,0:32:84.21:0,84,939 0/0:51,0:51:99:0,135,1548 0/0:55,1:57:99:0,123,1714 0/0:45,0:45:99:0,126,1470 0/0:28,0:28:78.19:0,78,868 0/0:42,0:42:99:0,108,1194 0/0:38,0:38:99:0,102,1176 0/0:48,0:48:99:0,144,1672 1 153732826 . A C 399.31 . AC=12;AF=0.143;AN=84;BaseQRankSum=-25.698;DP=2004;Dels=0.00;FS=544.229;HRun=4;HaplotypeScore=1.0748;InbreedingCoeff=-0.1939;MQ=56.47;MQ0=0;MQRankSum=-1.172;QD=0.89;ReadPosRankSum=-15.676 GT:AD:DP:GQ:PL 0/1:22,14:36:44.22:44,0,647 0/0:22,17:39:38.47:0,38,627 0/0:25,5:30:50.50:0,50,782 0/0:62,44:106:99:0,167,1903 0/1:30,28:58:7.06:7,0,822 0/0:40,25:65:76.61:0,77,1225 0/0:35,14:49:73.73:0,74,1207 0/0:37,33:71:73.60:0,74,1146 0/0:25,23:48:36.71:0,37,776 0/0:24,15:39:2.63:0,3,681 0/0:17,11:28:51.12:0,51,581 0/0:16,18:34:2.41:1,0,469 0/1:22,14:36:31.49:31,0,636 0/1:17,10:27:36.13:36,0,517 0/0:98,50:148:99:0,102,3047 0/1:18,11:29:81.77:82,0,480 0/0:26,13:39:1.60:4,0,781 0/1:14,9:23:7.23:7,0,415 0/1:31,20:51:55.14:55,0,956 0/0:50,27:77:93.11:0,93,1628 0/0:40,21:62:33.26:0,33,1219 0/0:23,16:40:41.46:0,41,672 0/0:53,28:81:99:0,119,1713 0/0:27,19:46:71.77:0,72,820 0/0:54,26:80:99:0,122,1814 0/0:41,14:55:36.07:0,36,1317 0/0:20,9:29:30.15:0,30,588 0/0:18,6:24:4.46:0,4,481 0/1:10,7:17:25.77:26,0,243 0/0:17,8:25:15.62:0,16,501 0/0:15,8:23:13.57:0,14,460 0/0:51,20:71:99:0,106,1693 0/0:30,15:45:62.40:0,62,941 0/0:27,17:44:36.85:0,37,859 0/0:16,8:24:20.44:0,20,485 0/1:23,21:44:99:124,0,672 0/0:46,19:65:14.88:0,15,1339 0/0:24,10:34:69.17:0,69,792 0/1:25,19:44:83.40:83,0,779 0/1:21,16:37:18.74:19,0,661 0/1:32,13:45:19.15:19,0,944 0/0:24,12:36:72.20:0,72,841 1 153750738 . G C 531.65 . 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T C 3029.53 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.632;DP=3859;DS;Dels=0.00;FS=13.182;HRun=0;HaplotypeScore=2.9297;InbreedingCoeff=-0.0244;MQ=59.26;MQ0=0;MQRankSum=-0.018;QD=11.61;ReadPosRankSum=0.194 GT:AD:DP:GQ:PL 0/0:70,0:70:99:0,187,2256 0/0:48,0:48:99:0,126,1526 0/0:62,0:62:99:0,159,1911 0/0:250,0:250:99:0,653,7983 0/0:218,0:219:99:0,575,7045 0/0:142,0:142:99:0,349,4415 0/0:115,0:116:99:0,295,3653 0/0:109,1:110:99:0,295,3571 0/0:50,0:50:99:0,132,1533 0/0:67,0:68:99:0,175,2111 0/0:59,0:59:99:0,162,1916 0/0:65,0:65:99:0,172,2081 0/0:42,0:42:99:0,117,1407 0/0:57,0:57:99:0,150,1832 0/0:192,0:192:99:0,493,5894 0/0:64,0:64:99:0,181,2127 0/0:49,0:49:99:0,138,1662 0/0:52,0:52:99:0,135,1594 0/1:52,54:107:99:1391,0,1457 0/1:80,72:154:99:1701,0,2096 0/0:114,0:114:99:0,289,3515 0/0:54,0:54:99:0,144,1720 0/0:250,0:250:99:0,647,7921 0/0:110,0:110:99:0,259,3297 0/0:149,0:150:99:0,400,4843 0/0:121,1:122:99:0,310,3847 0/0:56,0:56:99:0,150,1826 0/0:59,0:59:99:0,162,1933 0/0:38,0:38:99:0,108,1284 0/0:51,0:51:99:0,135,1629 0/0:61,0:61:99:0,175,2102 0/0:127,0:127:99:0,343,4173 0/0:86,0:86:99:0,223,2684 0/0:40,0:40:99:0,117,1369 0/0:81,0:81:99:0,226,2707 0/0:52,0:52:99:0,147,1781 0/0:117,0:117:99:0,325,3862 0/0:77,0:78:99:0,202,2412 0/0:57,0:57:99:0,159,1882 0/0:62,0:64:99:0,178,2157 0/0:53,0:53:99:0,138,1653 0/0:61,1:62:99:0,143,1962 1 153751868 . C T 924.40 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.469;DP=2527;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.0540;InbreedingCoeff=-0.0244;MQ=58.91;MQ0=0;MQRankSum=1.560;QD=12.49;ReadPosRankSum=-1.627 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,144,1573 0/1:19,16:35:99:380,0,544 0/1:18,21:39:99:607,0,518 0/0:134,0:134:99:0,388,4648 0/0:131,0:132:99:0,388,4699 0/0:100,0:100:99:0,286,3440 0/0:106,0:106:99:0,307,3599 0/0:97,0:97:99:0,259,3114 0/0:39,0:39:99:0,111,1210 0/0:40,0:40:99:0,114,1355 0/0:31,0:32:90.18:0,90,960 0/0:49,0:49:99:0,123,1392 0/0:33,0:33:93.25:0,93,1034 0/0:46,0:47:99:0,126,1400 0/0:160,0:160:99:0,448,5001 0/0:41,0:41:99:0,111,1239 0/0:41,0:41:99:0,120,1316 0/0:33,0:33:93.23:0,93,1014 0/0:63,0:63:99:0,174,2021 0/0:80,0:80:99:0,226,2633 0/0:72,0:72:99:0,195,2138 0/0:31,0:31:84.19:0,84,896 0/0:125,0:125:99:0,358,4375 0/0:83,0:83:99:0,244,2922 0/0:80,0:80:99:0,232,2826 0/0:75,0:75:99:0,214,2610 0/0:40,0:40:99:0,114,1263 0/0:32,0:32:96.25:0,96,1062 0/0:38,0:38:99:0,111,1213 0/0:34,0:34:99:0,99,1067 0/0:39,0:39:99:0,111,1233 0/0:67,0:67:99:0,177,2042 0/0:47,0:47:99:0,135,1487 0/0:43,0:43:99:0,126,1390 0/0:57,0:57:99:0,162,1772 0/0:39,0:39:99:0,111,1216 0/0:71,0:71:99:0,204,2218 0/0:36,0:36:99:0,99,1087 0/0:34,0:34:99:0,99,1070 0/0:53,0:53:99:0,156,1702 0/0:39,0:39:99:0,114,1251 0/0:41,0:41:99:0,111,1249 1 153751869 . G T 2397.71 . AC=4;AF=0.048;AN=84;BaseQRankSum=-6.143;DP=2532;Dels=0.00;FS=2.574;HRun=0;HaplotypeScore=2.9663;InbreedingCoeff=-0.0500;MQ=58.89;MQ0=0;MQRankSum=1.226;QD=10.75;ReadPosRankSum=-0.462 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,129,1563 0/0:33,0:34:90.26:0,90,1102 0/1:20,18:38:99:478,0,597 0/0:135,0:135:99:0,391,4882 0/0:135,0:135:99:0,397,5049 0/0:96,0:98:99:0,271,3396 0/0:102,0:102:99:0,280,3503 0/0:98,0:98:99:0,256,3202 0/0:40,0:40:99:0,108,1284 0/1:19,21:40:99:536,0,517 0/0:33,0:33:93.22:0,93,1086 0/0:51,0:51:99:0,126,1539 0/0:33,0:33:93.28:0,93,1116 0/0:48,0:48:99:0,132,1600 0/0:160,0:162:99:0,454,5452 0/0:38,0:39:99:0,108,1244 0/0:37,0:38:99:0,105,1241 0/0:33,0:33:93.25:0,93,1086 0/1:43,22:65:99:451,0,1198 0/1:42,38:80:99:1019,0,1236 0/0:70,0:71:99:0,199,2339 0/0:31,0:31:84.24:0,84,988 0/0:126,0:126:99:0,361,4599 0/0:83,0:83:99:0,235,2961 0/0:78,0:78:99:0,229,2860 0/0:75,0:75:99:0,211,2727 0/0:39,0:39:99:0,108,1290 0/0:31,0:31:90.23:0,90,1030 0/0:39,0:39:99:0,114,1346 0/0:35,0:35:99:0,102,1227 0/0:40,0:40:99:0,120,1409 0/0:66,0:67:99:0,162,1928 0/0:47,0:47:99:0,129,1495 0/0:46,0:46:99:0,120,1430 0/0:57,1:58:99:0,165,1941 0/0:38,0:38:99:0,111,1294 0/0:71,0:72:99:0,199,2319 0/0:33,1:34:90.25:0,90,1088 0/0:36,0:36:96.23:0,96,1095 0/0:52,0:52:99:0,144,1727 0/0:40,0:40:99:0,120,1451 0/0:43,0:43:99:0,114,1354 1 153905435 . G C 44.87 . AC=2;AF=0.024;AN=84;BaseQRankSum=-10.707;DP=1832;Dels=0.00;FS=435.120;HRun=2;HaplotypeScore=1.9595;InbreedingCoeff=-0.0503;MQ=59.03;MQ0=0;MQRankSum=0.756;QD=0.34;ReadPosRankSum=-11.271 GT:AD:DP:GQ:PL 0/0:30,7:37:69.15:0,69,846 0/0:33,6:39:84.25:0,84,1027 0/0:33,7:40:86.62:0,87,1027 0/0:69,3:72:99:0,184,2343 0/0:63,5:68:99:0,140,2253 0/0:54,3:57:99:0,150,1982 0/0:47,6:53:98.95:0,99,1668 0/0:45,5:50:91.61:0,92,1602 0/0:24,8:32:0.92:6,0,639 0/0:21,1:22:48.15:0,48,596 0/0:30,1:31:78.21:0,78,958 0/0:30,7:37:32.45:0,32,972 0/0:11,8:19:0.87:7,0,223 0/0:27,3:30:66.19:0,66,794 0/0:92,27:119:99:0,101,2656 0/0:29,6:35:72.20:0,72,868 0/0:23,5:28:64.04:0,64,730 0/0:29,6:35:35.50:0,35,697 0/0:48,7:56:90.06:0,90,1332 0/0:83,8:91:99:0,157,2336 0/1:51,15:66:45.64:46,0,1530 0/0:34,11:45:90.04:0,90,1062 0/0:76,9:85:99:0,182,2734 0/0:31,1:32:90.28:0,90,1203 0/0:55,5:60:99:0,144,1885 0/0:29,5:34:69.22:0,69,921 0/0:22,1:23:60.16:0,60,728 0/0:26,6:32:47.62:0,48,872 0/0:17,3:20:42.13:0,42,534 0/0:32,15:47:50.66:0,51,948 0/0:23,6:29:51.16:0,51,630 0/0:55,9:64:99:0,129,1578 0/0:35,6:41:75.20:0,75,888 0/0:24,4:28:24.53:0,25,588 0/0:26,7:33:38.62:0,39,795 0/0:30,6:36:31:0,31,974 0/1:50,15:65:59.64:60,0,1333 0/0:27,5:32:57.17:0,57,713 0/0:12,4:16:27.09:0,27,341 0/0:23,6:29:51.12:0,51,599 0/0:24,6:30:2:0,2,607 0/0:30,4:34:84.24:0,84,1018 1 154061982 . T G 249.24 . AC=9;AF=0.107;AN=84;BaseQRankSum=-37.566;DP=5540;DS;Dels=0.00;FS=3200.000;HRun=3;HaplotypeScore=3.9282;InbreedingCoeff=-0.1305;MQ=59.29;MQ0=0;MQRankSum=-0.270;QD=0.24;ReadPosRankSum=-19.561 GT:AD:DP:GQ:PL 0/1:78,24:102:35.80:36,0,2423 0/0:95,31:126:99:0,150,3179 0/0:69,30:99:66.77:0,67,2120 0/0:184,39:223:99:0,208,6133 0/0:172,27:199:99:0,459,6219 0/0:137,49:187:67.55:0,68,4610 0/0:116,27:143:85.15:0,85,3919 0/0:125,28:154:99:0,234,4278 0/1:83,30:113:30.65:31,0,2595 0/1:80,34:114:52.52:53,0,2448 0/0:73,32:105:15.76:0,16,2299 0/0:73,30:103:99:0,169,2504 0/0:55,25:80:33.16:0,33,1775 0/0:84,19:103:99:0,122,2830 0/1:187,61:249:27.05:27,0,5722 0/0:69,24:93:42.03:0,42,2142 0/1:79,23:102:11.23:11,0,2502 0/0:65,32:97:74.55:0,75,2053 0/0:149,36:185:64.04:0,64,4740 0/0:176,40:216:99:0,220,5877 0/0:167,34:201:99:0,102,5243 0/0:81,34:115:84.09:0,84,2667 0/0:172,58:230:99:0,267,5780 0/0:116,24:140:99:0,204,3950 0/0:124,25:149:99:0,207,4276 0/0:132,27:160:99:0,369,4719 0/1:52,23:75:32.56:33,0,1528 0/1:68,34:102:85.02:85,0,2049 0/1:71,18:89:18.11:18,0,2332 0/1:71,28:100:80.25:80,0,2205 0/0:70,21:91:69.28:0,69,2356 0/0:153,41:194:99:0,178,4865 0/0:80,34:114:68.42:0,68,2472 0/0:79,26:105:39.85:0,40,2404 0/0:55,16:72:99:0,108,1842 0/0:101,21:123:99:0,178,3350 0/0:145,23:168:99:0,255,4936 0/0:82,26:108:77.50:0,78,2762 0/0:69,25:94:43.42:0,43,2182 0/0:79,29:108:94.19:0,94,2659 0/0:81,11:92:99:0,211,2754 0/0:74,36:111:1.21:5,0,2439 1 154293675 . G A 20594.34 . AC=30;AF=0.357;AN=84;BaseQRankSum=4.119;DP=2179;Dels=0.00;FS=16.187;HRun=0;HaplotypeScore=0.9597;InbreedingCoeff=-0.0370;MQ=57.06;MQ0=4;MQRankSum=10.655;QD=18.02;ReadPosRankSum=-2.095 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,108,1290 0/0:33,0:33:93.24:0,93,1060 0/1:18,19:37:99:531,0,462 0/0:108,0:108:99:0,280,3543 0/0:89,0:89:99:0,223,2967 0/0:80,0:81:99:0,208,2603 0/0:48,0:51:99:0,120,1466 0/0:58,0:58:99:0,147,1909 0/0:43,0:43:99:0,120,1420 0/0:35,0:35:84.22:0,84,980 0/0:29,0:29:75.21:0,75,915 0/1:16,15:31:99:431,0,435 0/1:20,13:33:99:375,0,600 0/1:13,21:34:99:647,0,352 1/1:0,119:119:99:3749,298,0 0/1:14,20:34:99:566,0,374 0/1:14,13:27:99:392,0,365 0/0:45,0:45:99:0,129,1540 0/0:76,0:76:99:0,193,2300 0/0:94,0:94:99:0,241,2857 0/1:33,36:69:99:1011,0,784 0/0:59,1:60:99:0,128,1860 0/0:121,0:121:99:0,325,4167 0/1:26,28:54:99:736,0,687 0/1:42,26:68:99:755,0,1201 0/1:31,30:61:99:851,0,848 1/1:0,32:32:90.26:1086,90,0 1/1:0,37:37:99:1310,105,0 0/1:11,8:19:99:236,0,342 1/1:0,36:36:99:1285,105,0 0/1:17,14:31:99:375,0,460 0/1:51,43:94:99:1146,0,1434 0/1:27,20:47:99:587,0,637 0/1:13,18:31:99:542,0,325 0/0:34,0:34:93.25:0,93,1095 0/1:27,18:45:99:472,0,772 0/1:31,29:60:99:871,0,755 0/1:20,15:35:99:398,0,575 0/0:38,0:38:99:0,111,1260 1/1:0,32:33:93.28:1142,93,0 0/1:19,16:35:99:416,0,539 0/1:19,22:41:99:685,0,542 1 154295592 . C T 45674.60 . AC=30;AF=0.357;AN=84;BaseQRankSum=-35.399;DP=5177;DS;Dels=0.00;FS=16.391;HRun=0;HaplotypeScore=2.4850;InbreedingCoeff=-0.0370;MQ=59.44;MQ0=1;MQRankSum=0.253;QD=16.75;ReadPosRankSum=-0.825 GT:AD:DP:GQ:PL 0/0:98,0:98:99:0,262,3371 0/0:92,0:92:99:0,241,3087 0/1:54,42:96:99:1126,0,1636 0/0:249,0:249:99:0,659,8905 0/0:231,0:231:99:0,623,8524 0/0:166,0:167:99:0,445,6052 0/0:172,0:172:99:0,439,6068 0/0:167,0:167:99:0,427,5858 0/0:101,0:101:99:0,271,3518 0/0:77,0:77:99:0,196,2512 0/0:95,0:96:99:0,247,3151 0/1:47,43:90:99:1157,0,1359 0/1:44,40:84:99:1101,0,1240 0/1:41,31:72:99:819,0,1265 1/1:1,249:250:99:8068,629,0 0/1:52,46:99:99:1292,0,1604 0/1:56,43:99:99:1175,0,1793 0/0:83,0:83:99:0,238,2997 0/0:180,0:180:99:0,478,6100 0/0:198,0:198:99:0,515,6616 0/1:84,84:169:99:2307,0,2349 0/0:104,0:104:99:0,274,3498 0/0:248,0:249:99:0,668,9156 0/1:81,87:168:99:2413,0,2428 0/1:84,80:164:99:2182,0,2486 0/1:73,72:146:99:1910,0,2270 1/1:0,53:53:99:1868,156,0 1/1:0,76:76:99:2585,211,0 0/1:49,36:86:99:991,0,1527 1/1:1,77:78:99:2526,205,0 0/1:43,35:78:99:940,0,1298 0/1:72,63:135:99:1778,0,2070 0/1:40,40:80:99:1090,0,1166 0/1:56,41:97:99:1137,0,1722 0/0:90,1:91:99:0,219,3037 0/1:53,49:102:99:1405,0,1476 0/1:79,59:138:99:1503,0,2168 0/1:48,40:89:99:1090,0,1386 0/0:95,0:95:99:0,268,3381 1/1:0,93:93:99:3054,250,0 0/1:50,37:87:99:1025,0,1501 0/1:51,45:96:99:1132,0,1609 1 154296076 . T C 36751.20 . AC=15;AF=0.179;AN=84;BaseQRankSum=-4.846;DP=7522;DS;Dels=0.00;FS=1.676;HRun=1;HaplotypeScore=4.7048;InbreedingCoeff=-0.0551;MQ=59.48;MQ0=0;MQRankSum=1.877;QD=14.18;ReadPosRankSum=-4.763 GT:AD:DP:GQ:PL 0/1:78,95:173:99:2565,0,2181 0/1:77,59:136:99:1430,0,2145 0/0:114,1:115:99:0,283,3894 0/1:141,109:250:99:3043,0,3913 0/1:119,131:250:99:3955,0,3410 0/0:249,0:249:99:0,659,8594 0/0:248,1:249:99:0,621,8433 0/0:247,1:249:99:0,591,8042 1/1:0,134:134:99:4408,364,0 0/1:76,57:134:99:1561,0,2081 0/1:76,69:145:99:1896,0,2151 0/0:136,0:136:99:0,355,4484 0/0:133,0:135:99:0,343,4346 0/0:149,0:150:99:0,388,4900 0/0:250,0:250:99:0,680,8340 0/0:132,0:132:99:0,361,4468 0/0:145,0:145:99:0,397,4945 0/0:137,0:137:99:0,379,4707 0/1:122,128:250:99:3369,0,3444 0/1:143,106:249:99:2933,0,4178 0/0:249,1:250:99:0,642,8330 0/0:188,0:188:99:0,487,6074 0/1:115,135:250:99:4075,0,3229 0/0:248,0:249:99:0,611,7944 0/0:250,0:250:99:0,641,8332 0/0:248,0:248:99:0,614,8009 0/0:118,0:118:99:0,313,3937 0/0:125,0:126:99:0,337,4210 0/0:132,0:132:99:0,352,4378 0/0:125,0:125:99:0,349,4354 0/1:55,55:110:99:1440,0,1583 0/1:136,110:247:99:2880,0,3827 0/0:208,1:209:99:0,480,6413 0/0:120,0:120:99:0,331,4123 0/0:126,0:126:99:0,331,4151 0/0:173,0:173:99:0,451,5706 0/0:247,0:248:99:0,641,8043 0/0:130,0:131:99:0,343,4270 0/1:78,62:140:99:1676,0,2173 0/0:154,0:154:99:0,397,5038 0/1:66,58:124:99:1522,0,1883 0/0:135,1:136:99:0,370,4558 1 154296773 . GTGGT G 1271.63 . AC=29;AF=0.345;AN=84;BaseQRankSum=0.321;DP=1482;FS=986.301;HRun=0;HaplotypeScore=149.3231;InbreedingCoeff=-0.5187;MQ=58.05;MQ0=0;MQRankSum=1.038;QD=1.26;ReadPosRankSum=-14.175 GT:AD:DP:GQ:PL 0/1:27,0:27:17.32:17,0,789 0/1:24,0:24:8.89:9,0,1207 0/1:21,0:21:14.10:14,0,892 0/1:68,0:68:99:136,0,1196 0/0:73,0:73:11.86:0,12,2628 0/1:57,0:56:14.65:15,0,1920 0/1:42,0:42:47.83:48,0,1409 0/0:45,0:44:46.39:0,46,1335 0/0:20,0:20:23.22:0,23,1089 0/1:17,0:17:42.88:43,0,448 0/1:38,0:38:95.28:95,0,1660 0/1:17,0:17:18.86:19,0,651 0/0:13,0:13:6.08:0,6,498 0/1:22,0:22:33.95:34,0,770 0/1:89,0:89:87.08:87,0,3749 0/1:35,0:35:99:148,0,744 0/1:27,0:27:69.99:70,0,786 0/1:29,0:29:48.91:49,0,1011 0/1:51,0:51:99:179,0,1505 0/0:33,16:50:67.94:0,68,1860 0/1:39,0:39:48.73:49,0,1279 0/1:26,0:26:53.67:54,0,505 0/1:69,0:69:21.83:22,0,2150 0/1:40,0:40:96.09:96,0,1054 0/0:50,0:50:8.25:0,8,1634 0/0:47,0:46:4.93:0,5,1405 0/1:23,0:23:19.85:20,0,719 0/0:25,0:25:17.24:0,17,1182 0/1:26,0:26:47.42:47,0,918 0/1:25,0:25:56.49:56,0,684 0/0:27,0:27:5.13:0,5,1109 0/0:41,0:41:69.06:0,69,1815 0/0:32,0:32:25.29:0,25,1435 0/0:25,0:25:33.16:0,33,1144 0/1:28,0:27:34.95:35,0,1055 0/1:30,0:30:14.73:15,0,1309 0/1:40,0:40:57.18:57,0,1340 0/1:26,0:26:2.08:0,2,1074 0/1:32,0:32:6.78:7,0,1132 0/1:16,0:16:7.83:8,0,731 0/0:24,0:24:45.12:0,45,995 0/1:26,0:26:25.79:26,0,1009 1 154296774 . T G 845.69 . AC=19;AF=0.226;AN=84;BaseQRankSum=-20.020;DP=1481;Dels=0.01;FS=427.276;HRun=2;HaplotypeScore=2.1454;InbreedingCoeff=-0.3167;MQ=58.06;MQ0=0;MQRankSum=-0.211;QD=1.10;ReadPosRankSum=-15.470 GT:AD:DP:GQ:PL 0/1:13,14:27:20.58:21,0,363 0/0:17,7:24:50.73:0,51,559 0/0:12,9:21:1.75:0,2,366 0/1:23,45:68:99:105,0,589 0/1:35,38:73:15.24:15,0,1013 0/0:27,29:57:9.76:0,10,771 0/1:22,20:42:27.93:28,0,615 0/0:22,23:45:32.46:0,32,584 0/0:13,7:20:36.11:0,36,441 0/1:7,10:17:3.76:4,0,152 0/1:23,15:38:84.35:84,0,624 0/1:10,7:17:27.20:27,0,261 0/0:8,5:13:18.06:0,18,220 0/1:13,9:22:34.82:35,0,360 0/1:53,36:89:64.61:65,0,1433 0/1:13,22:35:99:117,0,311 0/0:11,16:27:2.40:0,2,242 0/0:16,13:29:19.16:0,19,402 0/1:22,29:51:99:207,0,587 0/0:30,2:32:75.19:0,75,857 0/1:18,21:39:37.28:37,0,505 0/1:11,15:26:45.93:46,0,222 0/1:31,38:69:2.18:2,0,865 0/1:15,25:40:87.64:88,0,404 0/0:24,26:50:41.47:0,41,682 0/0:21,26:47:0.56:0,1,592 0/0:11,12:23:30.08:0,30,347 0/0:17,8:25:39.12:0,39,479 0/1:14,12:26:21.11:21,0,367 0/1:9,16:25:1.05:1,0,231 0/0:16,11:27:19.44:0,19,485 0/0:28,13:41:72.06:0,72,806 0/0:19,13:32:51.15:0,51,597 0/0:17,8:25:45.14:0,45,541 0/1:15,13:28:24.49:24,0,402 0/0:19,11:30:26.55:0,27,600 0/1:22,18:40:70.73:71,0,615 0/0:17,9:26:23.46:0,23,525 0/0:18,14:32:26.14:0,26,564 0/0:9,7:16:0.40:0,0,271 0/0:16,8:24:39.10:0,39,436 0/0:16,10:26:2.88:0,0,435 1 154296812 . C T 2035.13 . AC=4;AF=0.048;AN=84;BaseQRankSum=-0.726;DP=1462;Dels=0.00;FS=0.506;HRun=0;HaplotypeScore=2.0300;InbreedingCoeff=-0.0500;MQ=58.76;MQ0=1;MQRankSum=-0.623;QD=14.85;ReadPosRankSum=0.267 GT:AD:DP:GQ:PL 0/1:12,14:26:99:357,0,295 0/1:12,9:21:99:256,0,325 0/0:23,0:23:66.18:0,66,766 0/0:73,0:73:99:0,193,2302 0/0:66,0:67:99:0,180,2183 0/0:59,0:59:99:0,150,1741 0/0:44,0:44:99:0,123,1467 0/0:51,0:52:99:0,144,1739 0/0:23,0:23:69.20:0,69,819 0/0:22,0:22:57.17:0,57,679 0/0:23,0:23:69.17:0,69,810 0/0:21,0:21:57.16:0,57,678 0/0:17,0:17:48.14:0,48,579 0/0:24,0:24:66.19:0,66,798 0/0:63,0:63:99:0,171,1977 0/0:30,0:30:84.23:0,84,976 0/0:17,0:17:45.10:0,45,512 0/0:22,0:22:63.14:0,63,705 0/1:18,33:51:99:864,0,486 0/1:14,24:39:99:644,0,383 0/0:41,0:41:99:0,108,1297 0/0:32,0:33:90.19:0,90,1038 0/0:88,0:88:99:0,241,2824 0/0:39,0:39:99:0,105,1252 0/0:59,0:59:99:0,165,1982 0/0:51,0:51:99:0,138,1633 0/0:18,0:18:51.13:0,51,597 0/0:25,0:25:69.20:0,69,825 0/0:21,0:21:60.16:0,60,728 0/0:29,0:29:87.25:0,87,1035 0/0:18,0:19:51.13:0,51,599 0/0:49,0:50:99:0,138,1695 0/0:32,0:32:81.22:0,81,965 0/0:28,0:28:84.23:0,84,987 0/0:24,0:24:63.19:0,63,758 0/0:27,0:27:78.18:0,78,898 0/0:40,0:40:99:0,111,1308 0/0:27,0:27:75.18:0,75,879 0/0:26,0:26:66.17:0,66,770 0/0:19,0:19:51.16:0,51,633 0/0:25,0:25:69.20:0,69,830 0/0:24,0:24:63.18:0,63,759 1 154316434 . C T 7262.28 . AC=14;AF=0.167;AN=84;BaseQRankSum=3.418;DP=1933;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.0450;InbreedingCoeff=-0.0286;MQ=59.05;MQ0=0;MQRankSum=2.497;QD=15.10;ReadPosRankSum=0.503 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,117,1369 0/0:38,0:38:99:0,105,1205 0/0:24,0:24:69.18:0,69,785 0/0:109,0:109:99:0,307,3685 0/1:40,40:81:99:1117,0,1154 0/0:63,0:63:99:0,178,2184 0/0:69,0:69:99:0,187,2290 0/0:69,0:70:99:0,199,2378 0/1:20,13:33:99:374,0,559 0/0:30,0:30:84.22:0,84,956 0/1:17,11:28:99:296,0,513 0/0:40,0:40:99:0,108,1274 0/1:17,7:24:99:181,0,471 0/0:58,0:58:99:0,162,1860 0/0:97,0:98:99:0,247,2970 0/0:32,0:32:90.26:0,90,1058 0/0:42,0:42:99:0,120,1407 0/0:29,0:29:84.21:0,84,953 0/0:60,0:60:99:0,165,1855 0/0:65,0:65:99:0,174,2049 0/1:16,24:40:99:709,0,380 0/0:46,0:46:99:0,117,1404 0/0:94,0:94:99:0,262,3226 0/0:46,0:46:99:0,126,1570 0/0:59,0:59:99:0,165,1962 0/0:57,0:57:99:0,153,1898 0/1:14,16:30:99:496,0,351 0/0:34,0:34:90.26:0,90,1062 0/1:9,18:27:99:526,0,238 0/0:45,0:45:99:0,126,1493 0/0:27,0:27:78.22:0,78,903 1/1:0,51:51:99:1612,129,0 0/0:38,0:38:99:0,108,1177 0/1:17,14:31:99:377,0,484 0/0:22,1:23:30.03:0,30,674 0/1:18,14:32:99:354,0,508 0/0:53,0:53:99:0,144,1666 0/0:38,0:38:99:0,108,1189 0/1:21,19:41:99:549,0,573 0/1:25,16:41:99:457,0,689 0/0:23,0:23:69.15:0,69,782 0/1:14,8:22:99:215,0,385 1 154316499 . C T 54.60 . AC=5;AF=0.060;AN=84;BaseQRankSum=-10.428;DP=1549;Dels=0.00;FS=99.062;HRun=1;HaplotypeScore=1.4098;InbreedingCoeff=-0.1082;MQ=58.78;MQ0=0;MQRankSum=-0.085;QD=0.35;ReadPosRankSum=-4.148 GT:AD:DP:GQ:PL 0/0:26,5:32:24.66:0,25,594 0/0:31,6:38:6.80:0,7,574 0/0:16,4:21:36.11:0,36,428 0/0:70,12:85:57.87:0,58,1127 0/0:56,19:79:40.84:0,41,958 0/1:28,13:43:37.36:37,0,461 0/0:26,5:31:45.10:0,45,512 0/0:43,5:49:44.43:0,44,685 0/0:31,2:33:60.14:0,60,684 0/1:18,3:21:38.06:38,0,189 0/0:16,5:21:18.02:0,18,191 0/1:24,7:34:34.74:35,0,443 0/0:22,2:26:33.05:0,33,375 0/0:19,8:29:7.39:0,7,298 0/0:53,16:75:56.52:0,57,894 0/0:30,6:38:45.10:0,45,491 0/0:22,5:29:1.38:4,0,399 0/0:29,7:36:9.67:0,10,583 0/1:23,7:30:23.81:24,0,348 0/0:43,4:49:54.56:0,55,886 0/0:22,3:28:39.09:0,39,461 0/0:20,2:24:39.08:0,39,430 0/0:42,13:59:51.13:0,51,608 0/0:35,2:38:72.15:0,72,849 0/0:45,5:51:87.21:0,87,1021 0/0:35,6:41:72.17:0,72,857 0/0:17,1:18:33.09:0,33,381 0/1:19,11:30:7.27:7,0,364 0/0:17,4:21:27.03:0,27,280 0/0:29,5:34:54.11:0,54,589 0/0:27,3:30:48.12:0,48,563 0/0:28,5:34:2.58:1,0,592 0/0:29,3:33:44.51:0,45,738 0/0:35,2:37:54.13:0,54,618 0/0:25,8:34:12.01:0,12,496 0/0:27,8:36:1.12:5,0,346 0/0:28,11:40:0.97:6,0,461 0/0:23,9:32:51.13:0,51,586 0/0:28,4:34:45.13:0,45,534 0/0:33,4:38:20.72:0,21,570 0/0:26,2:28:51.12:0,51,581 0/0:28,2:30:45.08:0,45,510 1 154317153 . C T 64518.51 . AC=38;AF=0.452;AN=84;BaseQRankSum=16.997;DP=4921;DS;Dels=0.00;FS=1.935;HRun=0;HaplotypeScore=2.7315;InbreedingCoeff=-0.3455;MQ=59.32;MQ0=0;MQRankSum=-0.189;QD=16.73;ReadPosRankSum=2.738 GT:AD:DP:GQ:PL 0/1:41,53:94:99:1526,0,1147 0/1:43,40:83:99:1212,0,1194 0/1:43,29:72:99:791,0,1214 0/1:119,88:207:99:2550,0,3568 0/1:101,88:189:99:2591,0,2982 1/1:0,128:129:99:4556,355,0 0/1:72,84:156:99:2565,0,2128 1/1:0,133:133:99:4552,358,0 0/0:101,0:101:99:0,274,3235 0/1:40,38:78:99:1115,0,1101 0/1:37,58:95:99:1730,0,939 0/1:38,36:74:99:1017,0,1062 0/1:35,29:64:99:826,0,924 0/1:41,51:92:99:1505,0,1044 0/0:231,0:231:99:0,647,7480 0/1:37,37:74:99:1078,0,1054 0/1:51,59:110:99:1670,0,1349 1/1:0,81:81:99:2713,217,0 0/1:125,99:224:99:2662,0,3382 0/1:88,93:181:99:2721,0,2305 0/1:96,74:170:99:1990,0,2492 1/1:1,92:93:99:3141,220,0 0/1:112,93:205:99:2739,0,3183 0/1:51,54:105:99:1557,0,1555 0/1:78,68:146:99:2063,0,2331 0/1:56,58:114:99:1714,0,1595 0/0:78,0:78:99:0,229,2610 0/0:106,0:106:99:0,307,3535 0/1:49,44:93:99:1170,0,1354 0/0:93,0:93:99:0,268,3070 0/0:87,0:87:99:0,253,2977 0/0:182,0:182:99:0,493,5866 0/1:51,52:103:99:1535,0,1362 0/1:49,40:89:99:1149,0,1373 1/1:4,86:90:99:2973,151,0 0/1:53,45:98:99:1236,0,1487 0/1:65,81:146:99:2223,0,1665 0/1:42,42:84:99:1215,0,1033 0/1:54,37:91:99:999,0,1502 0/0:107,0:107:99:0,310,3636 0/0:79,1:80:99:0,178,2448 0/1:47,46:93:99:1434,0,1304 1 154321377 . T G 6.59 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.534;DP=757;Dels=0.00;FS=9.951;HRun=3;HaplotypeScore=0.5976;InbreedingCoeff=-0.0503;MQ=57.74;MQ0=0;MQRankSum=-0.361;QD=0.24;ReadPosRankSum=-3.144 GT:AD:DP:GQ:PL 0/0:9,4:13:18.01:0,18,178 0/0:12,1:13:24.04:0,24,267 0/0:10,5:15:21.04:0,21,221 0/0:37,4:41:90.12:0,90,958 0/0:18,9:27:29.40:0,29,489 0/0:22,1:23:48.10:0,48,532 0/0:20,4:24:45.08:0,45,503 0/0:22,3:25:48.07:0,48,503 0/0:8,2:10:21.03:0,21,223 0/0:9,3:12:18.04:0,18,197 0/0:18,2:20:45.10:0,45,504 0/0:11,4:15:30.06:0,30,333 0/0:12,1:13:30.04:0,30,314 0/0:15,4:19:5.48:0,5,337 0/0:28,7:35:78.19:0,78,887 0/0:10,4:14:27.08:0,27,311 0/0:11,5:16:27.04:0,27,284 0/0:5,7:12:12.03:0,12,136 0/0:15,7:22:36.07:0,36,406 0/0:25,7:32:63.13:0,63,685 0/0:18,10:28:0.20:13,0,381 0/0:14,1:15:39.06:0,39,401 0/0:32,9:41:75.11:0,75,777 0/0:10,0:10:21.04:0,21,232 0/0:22,1:23:51.08:0,51,554 0/0:17,2:19:36.01:0,36,343 0/1:3,3:6:13.66:14,0,92 0/0:11,1:12:30.05:0,30,322 0/0:2,2:4:3.01:0,3,39 0/0:9,3:12:24.05:0,24,262 0/0:10,2:12:30.08:0,30,352 0/0:20,4:24:48.07:0,48,494 0/0:21,1:22:57:0,57,558 0/0:10,3:13:21.06:0,21,241 0/0:12,1:13:36.09:0,36,395 0/0:10,5:15:24.07:0,24,283 0/1:16,4:21:47.28:47,0,310 0/0:8,4:12:2.36:0,2,239 0/0:9,6:15:21.05:0,21,239 0/0:10,3:13:24.04:0,24,266 0/0:5,5:10:15.02:0,15,156 0/0:9,7:16:24.04:0,24,273 1 154321554 . G T 494.75 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.050;DP=1149;Dels=0.00;FS=1.904;HRun=1;HaplotypeScore=0.7328;InbreedingCoeff=-0.0245;MQ=59.02;MQ0=0;MQRankSum=1.621;QD=14.55;ReadPosRankSum=0.207 GT:AD:DP:GQ:PL 0/0:22,0:22:57.17:0,57,691 0/0:16,0:16:48.13:0,48,571 0/0:19,0:19:57.17:0,57,690 0/0:50,0:50:99:0,138,1785 0/0:50,0:50:99:0,129,1739 0/0:37,0:37:96.31:0,96,1251 0/0:41,0:41:99:0,120,1624 0/0:44,0:44:99:0,120,1551 0/1:8,9:17:99:248,0,216 0/1:7,10:17:99:309,0,193 0/0:16,0:16:42.13:0,42,508 0/0:22,0:22:54.16:0,54,661 0/0:14,0:14:39.09:0,39,464 0/0:23,0:23:69.16:0,69,800 0/0:82,0:82:99:0,205,2491 0/0:20,0:20:60.15:0,60,707 0/0:11,0:11:33.09:0,33,391 0/0:19,0:19:51.15:0,51,612 0/0:32,1:33:90.26:0,90,1074 0/0:51,0:51:99:0,129,1633 0/0:35,0:35:81.23:0,81,987 0/0:28,0:28:72.22:0,72,893 0/0:52,0:52:99:0,138,1787 0/0:33,0:33:93.29:0,93,1191 0/0:39,0:39:99:0,111,1448 0/0:27,0:27:75.24:0,75,992 0/0:12,0:12:33.09:0,33,394 0/0:17,0:17:48.13:0,48,565 0/0:16,0:16:48.15:0,48,598 0/0:23,0:23:63.19:0,63,774 0/0:17,0:17:51.14:0,51,604 0/0:48,0:48:99:0,129,1608 0/0:27,0:27:78.23:0,78,943 0/0:19,0:19:48.15:0,48,612 0/0:24,0:24:63.20:0,63,775 0/0:9,0:9:21.06:0,21,258 0/0:36,0:36:90.27:0,90,1125 0/0:26,0:26:66.21:0,66,827 0/0:16,0:16:36.11:0,36,463 0/0:14,0:14:42.13:0,42,529 0/0:12,0:12:36.11:0,36,435 0/0:15,0:15:42.11:0,42,505 1 154516945 . G A 562.38 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.258;DP=977;Dels=0.00;FS=1.766;HRun=0;HaplotypeScore=0.4697;InbreedingCoeff=-0.0247;MQ=59.11;MQ0=0;MQRankSum=1.480;QD=11.97;ReadPosRankSum=0.039 GT:AD:DP:GQ:PL 0/0:20,0:21:57.15:0,57,650 0/0:17,0:17:45.12:0,45,509 0/0:15,0:15:39.11:0,39,452 0/0:38,0:38:99:0,99,1200 0/0:43,0:43:99:0,114,1410 0/0:35,0:35:84.26:0,84,1083 0/0:32,0:32:84.26:0,84,1038 0/0:24,0:24:69.20:0,69,824 0/0:24,0:25:63.18:0,63,760 0/0:15,0:15:42.12:0,42,495 0/0:23,0:23:54.14:0,54,612 0/0:10,0:10:27.07:0,27,318 0/0:13,0:13:36.09:0,36,420 0/0:16,0:16:42.11:0,42,493 0/0:57,0:57:99:0,147,1708 0/0:20,0:20:51.14:0,51,592 0/0:22,0:22:57.16:0,57,683 0/0:24,0:24:66.18:0,66,762 0/0:24,0:24:66.19:0,66,793 0/0:29,0:29:69.19:0,69,825 0/0:22,0:22:57.15:0,57,655 0/0:21,0:21:57.16:0,57,676 0/0:62,0:62:99:0,159,1970 0/0:16,0:16:39.10:0,39,465 0/0:25,0:25:63.18:0,63,768 0/0:16,0:16:42.13:0,42,531 0/0:15,0:15:39.09:0,39,448 0/0:14,0:14:39.11:0,39,456 0/0:14,0:14:36.10:0,36,412 0/0:18,0:18:54.14:0,54,610 0/0:16,1:17:15.87:0,16,509 0/0:30,0:30:60.18:0,60,756 0/0:19,0:19:48.09:0,48,552 0/0:17,0:17:48.13:0,48,549 0/0:22,0:22:60.17:0,60,717 0/0:22,0:22:63.17:0,63,714 0/0:22,0:22:57.16:0,57,685 0/0:21,0:21:54.15:0,54,639 0/0:19,0:19:54.15:0,54,626 0/1:11,11:22:99:271,0,297 0/1:13,12:25:99:354,0,342 0/0:15,0:15:42.11:0,42,479 1 154938954 . C T 385.89 . AC=3;AF=0.036;AN=84;BaseQRankSum=-2.407;DP=671;Dels=0.00;FS=3.511;HRun=1;HaplotypeScore=0.2234;InbreedingCoeff=-0.0383;MQ=59.16;MQ0=0;MQRankSum=-0.188;QD=8.39;ReadPosRankSum=0.018 GT:AD:DP:GQ:PL 0/0:14,0:14:39.12:0,39,498 0/0:11,0:11:33.11:0,33,423 0/0:13,0:13:36.11:0,36,447 0/0:22,0:22:63.21:0,63,858 0/0:28,0:28:84.27:0,84,1114 0/0:27,0:27:72.24:0,72,990 0/0:17,0:17:39.12:0,39,532 0/0:13,0:13:39.13:0,39,538 0/0:20,0:20:54.17:0,54,694 0/0:14,0:14:36.11:0,36,462 0/0:12,0:12:36.12:0,36,458 0/0:16,0:16:45.14:0,45,565 0/1:5,4:9:99:116,0,165 0/0:16,0:16:45.15:0,45,587 0/0:40,0:40:99:0,99,1254 0/0:15,0:15:42.13:0,42,536 0/0:16,0:16:42.14:0,42,541 0/0:5,0:5:15.05:0,15,194 0/0:14,0:14:42.13:0,42,539 0/0:20,0:20:54.17:0,54,699 0/1:14,8:22:99:203,0,413 0/0:14,0:14:36.10:0,36,452 0/0:25,0:25:66.19:0,66,877 0/0:16,0:16:42.13:0,42,555 0/0:21,0:21:57.19:0,57,786 0/0:19,0:19:51.16:0,51,674 0/0:17,0:17:51.16:0,51,633 0/0:9,0:9:27.09:0,27,341 0/0:17,0:17:39.13:0,39,520 0/0:4,0:4:12.04:0,12,149 0/0:13,0:13:36.11:0,36,453 0/1:10,5:15:99:142,0,317 0/0:15,0:15:42.14:0,42,544 0/0:8,0:8:24.07:0,24,295 0/0:13,0:13:36.11:0,36,462 0/0:13,0:13:39.12:0,39,497 0/0:24,0:24:66.21:0,66,833 0/0:14,0:14:39.11:0,39,481 0/0:14,0:14:36.11:0,36,463 0/0:16,0:16:48.14:0,48,590 0/0:9,0:9:27.09:0,27,344 0/0:11,0:11:30.10:0,30,391 1 155005947 . T TC 42 . AC=4;AF=0.048;AN=84;BaseQRankSum=2.990;DP=2103;FS=559.389;HRun=1;HaplotypeScore=169.4857;InbreedingCoeff=-0.0837;MQ=57.65;MQ0=0;MQRankSum=-1.358;QD=0.28;ReadPosRankSum=-10.584 GT:AD:DP:GQ:PL 0/0:26,8:34:34.91:0,35,693 0/0:35,12:47:20.62:0,21,798 0/0:34,0:34:60.17:0,60,753 0/0:115,1:116:0.89:6,0,1779 0/0:82,1:83:3.34:0,3,1115 0/0:76,0:76:33.98:0,34,1167 0/0:56,14:70:51.43:0,51,1089 0/0:74,0:74:93.10:0,93,1124 0/0:34,0:34:44.22:0,44,568 0/0:32,0:32:40.21:0,40,713 0/0:31,0:31:45.11:0,45,574 0/0:26,0:26:40.93:0,41,492 0/0:29,0:29:5.01:0,5,512 0/0:29,0:29:45.14:0,45,577 0/0:145,0:145:48:0,48,2561 0/0:31,0:31:45.07:0,45,551 0/1:39,0:39:9.92:10,0,585 0/0:23,0:23:13.20:0,13,512 0/0:58,0:58:16.43:0,16,990 0/0:73,0:73:99:0,139,1752 0/0:50,0:50:45.45:0,45,1120 0/0:48,0:48:16.11:0,16,734 0/0:99,0:98:26.12:0,26,1374 0/0:60,1:61:83.54:0,84,1133 0/0:91,0:90:85.44:0,85,1514 0/0:65,1:65:97.93:0,98,1264 0/0:22,0:22:32.13:0,32,384 0/0:33,0:33:40.98:0,41,636 0/0:25,0:25:24.12:0,24,439 0/1:47,1:48:50.52:51,0,773 0/0:24,0:24:4.18:0,4,469 0/0:75,0:75:99:0,110,1571 0/0:40,1:40:65.26:0,65,983 0/0:36,1:37:35.97:0,36,712 0/1:29,0:29:42.60:43,0,413 0/0:40,0:39:73.10:0,73,922 0/0:73,0:73:95.52:0,96,1626 0/0:37,0:37:41.19:0,41,848 0/0:24,0:24:25:0,25,427 0/0:25,0:25:1.25:5,0,468 0/0:39,0:39:11.07:0,11,806 0/1:32,0:32:27.98:28,0,520 1 155005949 . G C 38.87 . AC=4;AF=0.048;AN=84;BaseQRankSum=-11.584;DP=1944;Dels=0.00;FS=269.621;HRun=1;HaplotypeScore=1.8076;InbreedingCoeff=-0.0627;MQ=58.34;MQ0=0;MQRankSum=-0.766;QD=0.31;ReadPosRankSum=-7.845 GT:AD:DP:GQ:PL 0/0:26,0:27:60.15:0,60,683 0/0:33,0:34:75.22:0,75,904 0/0:24,7:31:63.15:0,63,739 0/0:74,40:114:99:0,109,2101 0/0:45,27:73:0.56:9,0,1217 0/0:46,26:72:88.16:0,88,1284 0/0:48,6:54:99:0,102,1215 0/0:45,24:69:99:0,99,1221 0/0:21,10:31:48.13:0,48,567 0/0:22,7:29:60.13:0,60,687 0/0:18,10:28:48.13:0,48,569 0/0:18,6:24:36.09:0,36,408 0/0:20,7:27:20.71:0,21,549 0/0:18,6:25:39.12:0,39,479 0/0:88,44:132:99:0,152,2708 0/0:20,10:30:48.12:0,48,564 0/0:24,12:36:63.15:0,63,735 0/0:16,5:21:45.14:0,45,547 0/0:40,11:52:37.88:0,38,1094 0/0:62,10:72:99:0,135,1597 0/0:34,13:47:99:0,102,1236 0/0:37,12:49:37.41:0,37,807 0/0:56,35:91:12.50:0,13,1483 0/0:42,17:59:75.83:0,76,1285 0/0:61,24:85:80.29:0,80,1597 0/0:40,16:57:93.26:0,93,1159 0/0:20,4:24:42.12:0,42,488 0/0:20,13:33:54.14:0,54,621 0/0:13,8:21:33.10:0,33,409 0/1:30,14:44:44.93:45,0,728 0/0:22,6:28:21.65:0,22,568 0/0:53,17:70:99:0,144,1677 0/0:32,7:39:75.22:0,75,916 0/0:28,7:35:26.73:0,27,637 0/1:17,10:27:47.20:47,0,453 0/0:32,7:39:84.17:0,84,944 0/0:52,14:66:99:0,126,1479 0/0:26,7:33:41.77:0,42,807 0/0:16,6:22:11.40:0,11,311 0/1:16,9:25:15.73:16,0,475 0/0:29,9:38:14.03:0,14,707 0/1:19,12:31:11.21:11,0,438 1 155006091 . A G 34696 . AC=36;AF=0.429;AN=84;BaseQRankSum=18.476;DP=2545;Dels=0.00;FS=26.425;HRun=0;HaplotypeScore=2.2117;InbreedingCoeff=-0.0694;MQ=58.68;MQ0=0;MQRankSum=-0.963;QD=19.46;ReadPosRankSum=-0.686 GT:AD:DP:GQ:PL 0/0:41,1:46:74.30:0,74,1232 0/0:54,0:55:99:0,153,1765 0/1:13,27:40:99:755,0,314 0/0:97,0:98:99:0,277,3065 0/1:49,42:93:99:1257,0,1355 0/1:42,47:89:99:1489,0,1144 0/1:38,31:73:99:911,0,984 1/1:1,68:69:99:2297,156,0 0/1:15,23:39:99:709,0,364 0/0:46,0:47:99:0,129,1471 0/1:15,28:44:99:787,0,392 0/1:25,25:50:99:699,0,620 0/0:27,1:29:41.23:0,41,823 0/1:27,24:51:99:725,0,782 1/1:0,164:165:99:5169,430,0 1/1:0,42:43:99:1515,123,0 0/1:18,29:47:99:798,0,452 1/1:0,42:43:99:1424,114,0 0/1:43,43:88:99:1222,0,1134 0/1:44,48:93:99:1210,0,1074 0/0:80,0:80:99:0,214,2484 0/0:75,1:76:99:0,177,2353 0/0:103,0:103:99:0,307,3430 0/1:29,35:64:99:1192,0,715 0/1:39,39:79:99:1157,0,1002 1/1:1,56:57:99:1929,120,0 0/0:34,0:35:93.27:0,93,1103 0/0:49,0:49:99:0,141,1633 0/0:37,0:38:99:0,111,1277 0/1:27,18:45:99:464,0,756 0/1:22,20:42:99:566,0,594 0/1:52,41:94:99:1016,0,1260 0/1:21,32:54:99:861,0,518 0/0:50,0:51:99:0,138,1583 0/1:15,22:37:99:628,0,388 0/0:55,0:55:99:0,156,1789 1/1:0,66:67:99:2175,180,0 1/1:0,43:43:99:1458,120,0 0/1:16,25:42:99:748,0,390 0/1:25,26:52:99:769,0,623 0/1:22,13:35:99:394,0,604 0/1:28,16:45:99:372,0,792 1 155026871 . G T 7387.26 . AC=10;AF=0.119;AN=84;BaseQRankSum=10.862;DP=3207;Dels=0.00;FS=0.514;HRun=0;HaplotypeScore=1.6356;InbreedingCoeff=0.0919;MQ=59.04;MQ0=0;MQRankSum=-1.063;QD=14.69;ReadPosRankSum=-0.074 GT:AD:DP:GQ:PL 0/1:26,23:50:99:703,0,637 1/1:0,33:33:99:1206,99,0 0/1:33,16:49:99:455,0,938 0/0:173,0:173:99:0,493,5977 0/0:151,0:151:99:0,433,5091 0/0:117,0:117:99:0,340,4126 0/0:85,0:86:99:0,247,3024 0/0:122,0:122:99:0,355,4206 0/0:65,0:65:99:0,183,2051 0/1:20,24:44:99:669,0,534 0/0:54,0:54:99:0,156,1756 0/0:60,0:60:99:0,165,1848 0/0:43,0:43:99:0,120,1358 0/0:48,1:49:99:0,104,1490 0/0:183,0:183:99:0,499,5577 0/0:75,0:75:99:0,208,2323 0/0:62,0:62:99:0,171,1890 0/0:49,0:49:99:0,138,1521 0/0:91,0:91:99:0,247,2710 0/0:99,0:101:99:0,283,3237 0/1:39,36:76:99:1018,0,934 0/1:34,24:58:99:693,0,895 0/0:197,0:197:99:0,560,6749 0/0:90,0:90:99:0,259,3167 0/0:109,0:109:99:0,307,3702 0/0:88,0:88:99:0,253,3048 0/0:47,0:47:99:0,135,1483 0/0:51,0:51:99:0,138,1529 0/0:47,0:48:99:0,129,1456 0/0:64,0:64:99:0,180,2038 0/1:30,17:47:99:375,0,881 0/1:49,57:106:99:1723,0,1179 0/0:62,0:63:99:0,186,2005 0/0:43,0:43:99:0,129,1407 0/0:45,0:46:99:0,135,1496 0/1:21,18:40:99:544,0,577 0/0:87,0:87:99:0,244,2697 0/0:64,0:64:99:0,177,1958 0/0:61,0:61:99:0,168,1883 0/0:60,0:60:99:0,165,1812 0/0:53,2:55:99:0,112,1686 0/0:50,0:50:99:0,141,1556 1 155026942 . A C 74910.57 . AC=66;AF=0.786;AN=84;BaseQRankSum=-30.991;DP=3653;DS;Dels=0.00;FS=11.140;HRun=0;HaplotypeScore=2.5854;InbreedingCoeff=-0.2727;MQ=58.93;MQ0=0;MQRankSum=1.977;QD=20.51;ReadPosRankSum=1.831 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1588,144,0 1/1:0,48:48:99:1379,123,0 0/1:34,30:64:99:723,0,979 1/1:1,170:171:99:5340,442,0 0/1:95,82:177:99:2190,0,2717 0/1:71,49:120:99:1253,0,2094 1/1:1,111:112:99:3519,258,0 0/1:74,65:139:99:1718,0,2106 1/1:0,63:63:99:1843,168,0 1/1:0,54:54:99:1577,141,0 1/1:1,53:54:99:1573,114,0 0/1:32,26:58:99:627,0,789 1/1:0,43:43:99:1337,120,0 0/1:31,26:57:99:588,0,908 0/1:139,99:238:99:2421,0,3770 0/1:42,38:80:99:908,0,1261 0/1:45,38:83:99:946,0,1225 0/1:24,33:57:99:831,0,700 1/1:2,94:96:99:2687,241,0 1/1:0,128:128:99:3827,334,0 1/1:0,86:86:99:2486,225,0 1/1:0,69:69:99:2053,183,0 0/1:122,83:205:99:2140,0,3586 1/1:0,82:82:99:2683,220,0 0/1:70,54:124:99:1450,0,2051 0/1:49,39:88:99:1027,0,1492 1/1:0,52:53:99:1589,141,0 1/1:0,60:60:99:1926,171,0 1/1:0,44:44:99:1376,120,0 0/1:49,33:83:99:631,0,1421 0/1:28,25:53:99:608,0,801 1/1:0,142:142:99:4076,361,0 1/1:1,81:82:99:2366,175,0 1/1:1,57:58:99:1731,153,0 0/1:26,30:56:99:795,0,716 1/1:0,71:71:99:2225,199,0 0/1:57,46:103:99:1124,0,1539 0/1:37,32:69:99:799,0,1097 1/1:3,62:65:99:1798,138,0 1/1:1,49:50:99:1594,147,0 1/1:0,53:53:99:1647,150,0 1/1:0,63:63:99:1913,171,0 1 155032806 . A C 4699.32 . 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A T 65708.95 . 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C G 99.50 . 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C T 89686.31 . 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G A 1268.59 . 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G A 2667.28 . 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G A 488.76 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.290;DP=1367;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7751;InbreedingCoeff=-0.0244;MQ=56.06;MQ0=3;MQRankSum=2.419;QD=15.27;ReadPosRankSum=0.126 GT:AD:DP:GQ:PL 0/0:22,0:22:60.15:0,60,660 0/0:25,0:25:60.14:0,60,682 0/0:32,0:32:87.20:0,87,954 0/0:51,0:51:99:0,141,1715 0/0:44,0:44:99:0,126,1518 0/0:30,0:30:87.26:0,87,1036 0/0:31,0:31:90.25:0,90,1056 0/0:29,0:29:87.24:0,87,1028 0/0:21,0:21:63.15:0,63,686 0/0:23,0:23:66.16:0,66,719 0/0:31,0:31:87.18:0,87,934 0/0:29,0:29:81.20:0,81,905 0/0:20,0:20:54.15:0,54,613 0/0:28,0:28:78.21:0,78,875 0/0:117,0:117:99:0,286,3262 0/0:30,0:30:87.22:0,87,953 0/0:32,0:32:93.20:0,93,990 0/0:30,0:30:81.19:0,81,884 0/0:45,0:45:99:0,123,1358 0/0:50,0:50:99:0,135,1540 0/0:54,0:54:99:0,141,1594 0/0:33,0:33:90.23:0,90,992 0/0:51,0:51:99:0,141,1698 0/0:32,0:32:90.27:0,90,1097 0/0:29,0:29:87.22:0,87,1011 0/0:28,0:28:81.22:0,81,961 0/0:33,0:33:90.23:0,90,1020 0/0:23,0:23:66.15:0,66,717 0/0:27,0:27:75.17:0,75,799 0/0:28,0:28:75.18:0,75,826 0/0:26,0:26:75.20:0,75,833 0/0:32,0:32:90.23:0,90,1000 0/0:29,0:29:78.20:0,78,880 0/1:6,11:17:99:343,0,153 0/0:24,0:24:66.17:0,66,737 0/1:8,7:15:99:209,0,193 0/0:32,0:32:84.21:0,84,931 0/0:22,0:22:57.15:0,57,651 0/0:28,0:28:72.19:0,72,812 0/0:28,0:28:75.19:0,75,853 0/0:22,0:22:60.14:0,60,638 0/0:34,0:34:96.25:0,96,1083 1 155206167 . C T 2610.29 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.839;DP=2369;Dels=0.00;FS=7.525;HRun=1;HaplotypeScore=1.5477;InbreedingCoeff=-0.0244;MQ=58.77;MQ0=0;MQRankSum=3.379;QD=12.03;ReadPosRankSum=0.199 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,108,1345 0/0:49,0:49:99:0,123,1495 0/0:49,0:49:99:0,123,1553 0/1:52,49:102:99:1424,0,1477 0/0:71,0:71:99:0,193,2524 0/0:67,0:67:99:0,172,2241 0/0:57,0:57:99:0,153,2013 0/0:64,0:64:99:0,181,2351 0/0:47,0:47:99:0,135,1694 0/0:43,0:43:99:0,114,1435 0/0:38,0:38:99:0,108,1310 0/0:37,0:37:99:0,102,1275 0/0:33,0:33:96.25:0,96,1162 0/0:38,0:38:99:0,102,1296 0/0:175,0:176:99:0,430,5329 0/0:41,0:41:99:0,117,1435 0/0:45,0:45:99:0,123,1524 0/0:44,0:44:99:0,117,1469 0/0:75,0:75:99:0,190,2342 0/0:67,0:67:99:0,184,2293 0/0:71,0:71:99:0,174,2134 0/0:43,0:43:99:0,120,1488 0/1:67,48:115:99:1249,0,2061 0/0:60,0:60:99:0,166,2191 0/0:73,0:73:99:0,193,2537 0/0:54,0:54:99:0,144,1862 0/0:39,0:39:99:0,108,1357 0/0:44,0:44:99:0,123,1521 0/0:56,0:56:99:0,156,1931 0/0:34,0:34:93.27:0,93,1156 0/0:45,1:46:91.70:0,92,1425 0/0:69,0:69:99:0,181,2255 0/0:50,0:50:99:0,132,1654 0/0:36,0:36:99:0,105,1277 0/0:53,0:53:99:0,135,1692 0/0:50,0:50:99:0,129,1621 0/0:71,0:71:99:0,190,2282 0/0:51,1:52:99:0,138,1722 0/0:54,0:54:99:0,144,1833 0/0:44,0:44:99:0,123,1552 0/0:40,0:40:99:0,111,1352 0/0:31,0:31:87.26:0,87,1088 1 155210498 . T C 2989.37 . AC=1;AF=0.012;AN=84;BaseQRankSum=8.491;DP=6922;DS;Dels=0.00;FS=13.334;HRun=1;HaplotypeScore=3.4411;InbreedingCoeff=-0.0120;MQ=54.08;MQ0=10;MQRankSum=4.566;QD=15.73;ReadPosRankSum=1.622 GT:AD:DP:GQ:PL 0/0:140,0:140:99:0,400,4854 0/0:157,0:157:99:0,436,5352 0/0:120,0:120:99:0,349,4277 0/0:204,0:204:99:0,572,7198 0/0:197,0:197:99:0,572,7238 0/0:187,0:188:99:0,527,6795 0/1:95,95:190:99:3036,0,2904 0/0:177,0:177:99:0,494,6314 0/0:131,0:131:99:0,367,4509 0/0:125,0:125:99:0,358,4387 0/0:143,0:144:99:0,406,5001 0/0:138,0:139:99:0,388,4790 0/0:132,0:132:99:0,364,4549 0/0:159,0:159:99:0,460,5679 0/0:248,0:250:99:0,701,8602 0/0:156,1:160:99:0,442,5427 0/0:131,0:131:99:0,376,4582 0/0:134,0:134:99:0,370,4593 0/0:228,0:229:99:0,635,7774 0/0:213,0:213:99:0,587,7199 0/0:209,0:211:99:0,593,7341 0/0:165,0:165:99:0,454,5567 0/0:202,0:202:99:0,560,7123 0/0:168,0:168:99:0,463,6031 0/0:199,0:199:99:0,566,7207 0/0:173,0:173:99:0,481,6105 0/0:124,0:125:99:0,355,4341 0/0:155,0:155:99:0,454,5502 0/0:142,0:142:99:0,400,4944 0/0:142,0:142:99:0,403,4993 0/0:163,0:163:99:0,472,5804 0/0:230,0:230:99:0,617,7758 0/0:156,1:158:99:0,416,5325 0/0:157,0:157:99:0,448,5496 0/0:137,0:137:99:0,385,4775 0/0:145,1:147:99:0,403,4970 0/0:226,1:227:99:0,620,7627 0/0:141,0:141:99:0,397,4862 0/0:148,0:148:99:0,436,5321 0/0:144,0:144:99:0,412,5150 0/0:125,0:125:99:0,358,4384 0/0:143,0:143:99:0,415,5042 1 155226575 . T C 61.89 . AC=4;AF=0.048;AN=84;BaseQRankSum=-11.088;DP=1661;Dels=0.00;FS=196.323;HRun=2;HaplotypeScore=0.7389;InbreedingCoeff=-0.0707;MQ=58.75;MQ0=1;MQRankSum=-1.183;QD=0.39;ReadPosRankSum=-8.481 GT:AD:DP:GQ:PL 0/0:22,9:32:23.42:0,23,485 0/0:17,13:30:36.10:0,36,421 0/0:15,12:27:6.46:0,6,327 0/0:36,21:58:72.14:0,72,1068 0/0:31,22:54:1.59:4,0,683 0/0:22,5:27:45.11:0,45,516 0/0:14,5:19:36.06:0,36,379 0/0:23,11:34:57.13:0,57,624 0/0:30,15:45:18.50:0,19,482 0/0:36,16:52:60.60:0,61,896 0/0:20,11:31:39.11:0,39,454 0/1:25,15:40:41.08:41,0,611 0/0:12,4:17:30.07:0,30,335 0/1:21,14:35:12.91:13,0,467 0/0:74,53:128:95.28:0,95,1555 0/0:22,10:32:48.13:0,48,548 0/0:24,12:36:41.61:0,42,459 0/0:22,13:35:48.10:0,48,532 0/1:29,12:41:44.91:45,0,697 0/0:34,9:44:60.15:0,60,676 0/0:31,20:52:38.60:0,39,730 0/0:33,7:40:13.78:0,14,584 0/0:38,21:59:17.49:0,17,965 0/0:22,9:31:42.12:0,42,509 0/0:24,11:35:45.11:0,45,508 0/0:21,9:31:48.12:0,48,544 0/0:13,13:26:2.48:0,2,298 0/0:24,9:33:37.45:0,37,637 0/0:26,11:37:45.05:0,45,474 0/0:20,10:30:14.68:0,15,476 0/0:16,9:25:27.07:0,27,298 0/0:45,18:63:52.86:0,53,898 0/0:30,9:39:66.15:0,66,725 0/0:22,6:28:25.49:0,25,548 0/0:27,16:43:32.50:0,32,624 0/0:26,18:44:39.49:0,39,681 0/0:28,23:51:12.10:0,12,643 0/0:21,15:36:45.13:0,45,517 0/0:23,7:30:51.13:0,51,585 0/1:26,18:44:46.25:46,0,601 0/0:29,13:42:69.74:0,70,813 0/0:12,13:25:6.48:0,6,367 1 155230131 . C T 33070.61 . AC=26;AF=0.310;AN=84;BaseQRankSum=-19.379;DP=3790;DS;Dels=0.00;FS=4.865;HRun=0;HaplotypeScore=2.7355;InbreedingCoeff=-0.1141;MQ=58.33;MQ0=0;MQRankSum=2.376;QD=15.28;ReadPosRankSum=0.946 GT:AD:DP:GQ:PL 0/0:61,0:61:99:0,163,2067 0/0:50,0:50:99:0,141,1736 0/0:69,0:69:99:0,175,2199 0/1:91,87:178:99:2226,0,2697 0/0:181,0:181:99:0,467,6376 0/1:77,61:138:99:1547,0,2351 0/1:75,70:145:99:1843,0,2102 0/1:74,67:142:99:1815,0,2106 0/0:54,0:55:99:0,147,1857 0/1:28,24:52:99:655,0,869 0/0:49,0:49:99:0,135,1690 0/0:48,0:48:99:0,138,1700 0/1:19,16:35:99:398,0,540 0/0:58,0:58:99:0,159,2007 0/0:234,0:235:99:0,596,7507 0/0:72,0:72:99:0,199,2494 0/1:27,33:61:99:828,0,797 0/0:53,0:53:99:0,141,1805 0/0:116,0:116:99:0,295,3701 0/0:139,0:139:99:0,373,4764 1/1:1,115:117:99:3634,295,0 1/1:0,59:60:99:1826,147,0 0/1:111,100:211:99:2680,0,3214 0/1:58,45:103:99:1141,0,1677 0/1:59,81:140:99:2277,0,1671 0/0:145,1:146:99:0,339,4917 0/0:40,1:41:85.11:0,85,1442 0/0:56,0:56:99:0,150,1903 0/0:42,0:42:99:0,120,1509 0/1:34,25:59:99:692,0,979 0/1:22,29:51:99:803,0,636 1/1:0,108:109:99:3477,283,0 0/1:40,45:85:99:1180,0,1102 0/1:32,34:67:99:959,0,942 0/1:37,18:55:99:465,0,1122 0/0:60,1:61:99:0,156,1999 0/1:50,40:90:99:1098,0,1338 0/1:27,35:62:99:1028,0,782 0/1:41,39:80:99:1068,0,1229 0/1:37,30:67:99:833,0,1079 0/1:33,25:58:99:599,0,957 0/0:92,1:93:99:0,208,3034 1 155247408 . G T 55.79 . AC=1;AF=0.013;AN=78;BaseQRankSum=0.518;DP=152;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2137;InbreedingCoeff=0.1990;MQ=58.31;MQ0=0;MQRankSum=0.713;QD=18.60;ReadPosRankSum=-0.559 GT:AD:DP:GQ:PL 0/0:2,0:2:6.01:0,6,66 ./. 0/0:4,0:4:12.03:0,12,136 0/0:4,0:4:12.04:0,12,161 0/0:3,0:3:9.03:0,9,119 0/0:1,0:1:3.01:0,3,31 0/1:0,3:3:0.51:110,9,0 0/0:3,0:3:9.03:0,9,122 0/0:2,0:2:6.02:0,6,70 0/0:2,0:2:6.02:0,6,71 0/0:2,0:2:6.02:0,6,67 0/0:2,0:2:6.02:0,6,69 ./. 0/0:3,0:3:9.01:0,9,98 0/0:11,0:11:27.07:0,27,316 0/0:4,0:4:12:0,12,121 0/0:4,0:4:12.01:0,12,120 0/0:4,0:4:12.04:0,12,147 0/0:4,0:4:12.04:0,12,146 0/0:11,0:11:30.07:0,30,327 0/0:8,0:8:24.07:0,24,293 0/0:4,0:4:12.04:0,12,157 0/0:9,0:9:27.07:0,27,327 0/0:3,0:3:6.01:0,6,68 0/0:4,0:4:12.04:0,12,156 ./. 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.03:0,9,104 0/0:2,0:2:3.01:0,3,39 0/0:4,0:4:12.04:0,12,145 0/0:3,0:3:9.02:0,9,101 0/0:5,0:5:15.04:0,15,171 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,38 0/0:4,0:4:12.03:0,12,130 0/0:3,0:3:9.03:0,9,109 0/0:5,0:5:12.04:0,12,160 0/0:3,0:3:9.02:0,9,99 0/0:4,0:4:9.03:0,9,121 0/0:7,0:7:21.06:0,21,254 0/0:4,0:4:9.02:0,9,99 0/0:3,0:3:6.02:0,6,75 1 155247578 . G C 98.83 . AC=7;AF=0.083;AN=84;BaseQRankSum=-6.914;DP=656;Dels=0.00;FS=528.619;HRun=1;HaplotypeScore=0.9217;InbreedingCoeff=-0.1350;MQ=58.67;MQ0=0;MQRankSum=-1.438;QD=1.11;ReadPosRankSum=-9.449 GT:AD:DP:GQ:PL 0/0:8,3:11:21.06:0,21,250 0/0:5,0:5:15.03:0,15,181 0/1:6,2:8:15.09:15,0,181 0/0:39,11:50:56.72:0,57,1363 0/0:27,5:32:79.13:0,79,1018 0/0:19,2:21:27.56:0,28,676 0/0:13,2:15:38.71:0,39,480 0/0:13,3:16:34.66:0,35,434 0/0:8,0:8:21.04:0,21,237 0/0:16,5:21:47.17:0,47,552 0/0:6,2:8:18.05:0,18,223 0/0:12,1:13:30.09:0,30,364 0/0:3,0:3:9.03:0,9,116 0/0:12,1:13:33.10:0,33,403 0/0:34,14:48:2.67:1,0,1006 0/0:10,1:11:2.50:0,2,321 0/0:13,2:15:0.85:0,1,361 0/0:8,0:8:21.07:0,21,264 0/0:15,2:17:45.11:0,45,531 0/0:11,4:15:0.85:0,1,373 0/0:17,4:21:44.35:0,44,520 0/0:10,4:14:30.09:0,30,374 0/0:31,4:35:63.59:0,64,1117 0/1:14,2:16:11.08:11,0,482 0/0:18,2:20:15.58:0,16,604 0/0:12,0:12:33.11:0,33,439 0/0:5,0:5:15.05:0,15,192 0/1:7,2:9:9.53:10,0,198 0/1:8,5:13:7.78:8,0,258 0/0:8,2:10:21.06:0,21,256 0/0:7,3:10:21.06:0,21,249 0/0:21,7:28:4.92:0,5,626 0/0:11,1:12:30.09:0,30,365 0/0:10,3:13:26.08:0,26,268 0/0:4,2:6:12.04:0,12,156 0/0:13,2:15:7.43:0,7,353 0/1:8,3:11:15.93:16,0,234 0/1:10,8:18:73.32:73,0,264 0/0:11,3:14:0.81:7,0,277 0/0:7,4:11:21.07:0,21,272 0/0:9,2:11:24.08:0,24,308 0/1:9,5:14:65.35:65,0,228 1 155247587 . A G 546.10 . AC=3;AF=0.036;AN=84;BaseQRankSum=4.278;DP=754;Dels=0.00;FS=4.708;HRun=0;HaplotypeScore=1.0536;InbreedingCoeff=-0.0390;MQ=58.59;MQ0=0;MQRankSum=1.011;QD=12.70;ReadPosRankSum=-0.489 GT:AD:DP:GQ:PL 0/0:12,0:12:33.10:0,33,411 0/0:6,0:6:15.05:0,15,193 0/0:9,0:9:27.08:0,27,333 0/0:60,0:60:99:0,156,2002 0/0:35,0:35:93.30:0,93,1221 0/0:27,0:27:72.23:0,72,942 0/0:17,0:17:48.16:0,48,633 0/0:20,0:20:51.16:0,51,659 0/0:8,0:8:21.06:0,21,251 0/0:21,0:21:54.17:0,54,678 0/0:12,0:12:27.08:0,27,344 0/0:12,0:12:36.11:0,36,439 0/0:5,0:5:12.04:0,12,156 0/0:12,0:12:36.06:0,36,395 0/0:54,0:55:99:0,144,1767 0/0:11,0:11:33.09:0,33,383 0/0:17,0:17:45.14:0,45,560 0/1:3,7:10:82.48:234,0,82 0/1:7,9:16:99:236,0,221 0/1:11,6:17:99:151,0,331 0/0:25,0:25:63.19:0,63,774 0/0:14,0:14:39.12:0,39,479 0/0:44,0:44:99:0,117,1502 0/0:17,0:17:51.16:0,51,636 0/0:22,0:22:54.17:0,54,679 0/0:16,0:16:36.11:0,36,468 0/0:8,0:8:21.07:0,21,271 0/0:15,0:15:42.12:0,42,503 0/0:16,0:16:45.14:0,45,563 0/0:14,0:14:36.11:0,36,448 0/0:10,0:10:21.07:0,21,276 0/0:36,0:36:96.29:0,96,1175 0/0:14,0:14:36.11:0,36,448 0/0:18,0:18:48.15:0,48,595 0/0:5,0:5:15.05:0,15,186 0/0:13,0:13:36.11:0,36,440 0/0:14,0:14:39.12:0,39,486 0/0:18,0:18:48.15:0,48,596 0/0:13,0:13:36.11:0,36,436 0/0:11,0:11:27.09:0,27,354 0/0:14,0:14:39.12:0,39,495 0/0:15,0:15:42.12:0,42,503 1 155583937 . A G 3144.71 . AC=21;AF=0.250;AN=84;BaseQRankSum=11.719;DP=4138;DS;Dels=0.00;FS=2.595;HRun=0;HaplotypeScore=0.3484;InbreedingCoeff=0.0450;MQ=10.92;MQ0=3643;MQRankSum=2.610;QD=1.77;ReadPosRankSum=-0.331 GT:AD:DP:GQ:PL 0/1:67,18:85:9.37:9,0,213 0/0:97,0:97:36.10:0,36,409 0/0:77,0:78:15.04:0,15,178 0/1:105,35:140:99:312,0,182 0/0:118,0:118:60.17:0,60,692 0/0:96,1:97:30.08:0,30,337 0/0:74,0:74:24.07:0,24,291 0/1:71,19:90:91.63:92,0,296 0/0:91,0:91:21.05:0,21,235 0/0:73,0:74:9.02:0,9,94 0/0:75,0:75:33.09:0,33,380 0/0:87,0:87:24.07:0,24,279 0/1:54,17:71:82.25:82,0,82 0/0:98,0:99:48.14:0,48,562 0/0:237,0:237:63.18:0,63,724 0/0:86,0:87:30.09:0,30,348 0/1:69,21:90:67.21:241,0,67 0/0:72,0:72:30.09:0,30,346 0/0:143,0:145:63.17:0,63,716 0/0:147,0:148:63.17:0,63,714 1/1:48,64:112:27.08:333,27,0 1/1:45,40:85:39.12:469,39,0 0/1:130,49:180:99:295,0,284 1/1:32,31:63:21.06:251,21,0 0/1:80,21:101:81.84:82,0,273 0/1:61,22:83:99:188,0,232 0/0:60,0:60:18.04:0,18,198 0/0:102,0:103:30.09:0,30,343 0/0:75,0:76:24.07:0,24,282 0/0:97,0:97:27.07:0,27,312 0/0:71,0:71:24.07:0,24,280 0/1:93,36:129:99:172,0,269 0/1:80,16:96:98.68:99,0,372 0/1:63,20:83:99:156,0,110 0/1:48,21:69:99:174,0,172 0/0:88,0:88:18.04:0,18,201 0/1:122,40:162:99:314,0,155 0/1:48,20:68:11.57:12,0,157 0/1:53,15:68:56.20:56,0,72 0/0:114,0:114:24.07:0,24,275 0/0:82,0:83:24.07:0,24,279 0/0:91,0:92:21.06:0,21,243 1 155583942 . G A 72.76 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.435;DP=4070;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.3773;InbreedingCoeff=-0.0178;MQ=10.48;MQ0=3625;MQRankSum=0.342;QD=0.94;ReadPosRankSum=-0.188 GT:AD:DP:GQ:PL 0/0:87,0:87:24.06:0,24,272 0/0:99,0:99:33.09:0,33,374 0/0:78,0:78:15.05:0,15,182 0/0:132,0:132:45.13:0,45,540 0/0:120,0:120:54.15:0,54,634 0/0:95,1:96:27.08:0,27,313 0/1:54,23:77:86.22:119,0,86 0/0:86,0:86:36.09:0,36,406 0/0:90,0:90:21.05:0,21,239 0/0:75,0:75:9.02:0,9,94 0/0:76,0:76:39.12:0,39,466 0/0:81,0:81:27.08:0,27,320 0/0:72,0:72:15.04:0,15,167 0/0:95,0:96:51.15:0,51,604 0/0:231,0:231:60.17:0,60,692 0/0:88,0:88:24.07:0,24,287 0/0:83,0:83:27.07:0,27,307 0/0:78,0:78:30.08:0,30,355 0/0:132,0:133:60.15:0,60,687 0/0:151,0:151:57.15:0,57,661 0/0:110,0:111:24.07:0,24,287 0/0:80,0:80:30.09:0,30,353 0/0:174,0:174:45.13:0,45,537 0/0:60,0:60:12.04:0,12,145 0/0:97,0:97:36.11:0,36,442 0/0:81,0:81:42.13:0,42,506 0/0:57,0:57:18.04:0,18,209 0/0:96,0:96:24.07:0,24,292 0/0:77,0:77:21.06:0,21,249 0/0:102,0:102:30.08:0,30,346 0/0:74,0:74:24.07:0,24,282 0/0:122,0:122:36.11:0,36,431 0/0:94,0:94:45.14:0,45,540 0/0:82,0:82:27.08:0,27,322 0/0:68,0:68:36.11:0,36,433 0/0:89,0:89:15.05:0,15,181 0/0:156,0:156:33.10:0,33,389 0/0:63,0:63:12.04:0,12,142 0/0:68,0:68:15.03:0,15,159 0/0:117,0:117:18.05:0,18,214 0/0:83,0:83:21.06:0,21,249 0/0:90,0:90:15.04:0,15,173 1 155699118 . T C 9254.09 . 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G A 6965.27 . AC=2;AF=0.024;AN=84;BaseQRankSum=-11.726;DP=5566;DS;Dels=0.00;FS=1.030;HRun=0;HaplotypeScore=1.6592;InbreedingCoeff=-0.0244;MQ=57.91;MQ0=22;MQRankSum=4.209;QD=14.73;ReadPosRankSum=0.475 GT:AD:DP:GQ:PL 0/0:87,0:87:99:0,235,2946 0/0:97,0:97:99:0,265,3277 0/0:89,0:89:99:0,256,3190 0/0:250,0:250:99:0,701,9354 0/0:230,0:230:99:0,632,8572 0/0:250,0:250:99:0,716,9568 0/0:248,0:248:99:0,704,9426 0/0:223,0:224:99:0,635,8501 0/0:106,0:106:99:0,292,3645 0/0:109,0:109:99:0,301,3699 0/0:82,0:82:99:0,232,2888 0/0:100,0:100:99:0,289,3607 0/0:87,0:87:99:0,229,2890 0/0:108,0:108:99:0,301,3707 0/0:236,0:239:99:0,632,7977 0/0:83,0:83:99:0,235,2955 0/0:92,0:92:99:0,271,3374 0/0:94,0:94:99:0,253,3183 0/0:163,0:163:99:0,403,4967 0/0:144,0:144:99:0,382,4850 0/0:144,0:144:99:0,376,4680 0/0:84,0:84:99:0,232,2917 0/0:250,0:250:99:0,701,9437 0/1:117,126:243:99:3756,0,3757 0/0:250,0:250:99:0,689,9235 0/1:118,112:230:99:3210,0,3872 0/0:71,0:71:99:0,208,2560 0/0:86,0:86:99:0,232,2855 0/0:71,0:71:99:0,202,2546 0/0:89,0:89:99:0,256,3179 0/0:69,0:69:99:0,190,2328 0/0:144,0:144:99:0,376,4788 0/0:91,0:91:99:0,253,3182 0/0:78,0:78:99:0,223,2762 0/0:110,0:110:99:0,310,3835 0/0:102,0:102:99:0,286,3574 0/0:126,0:126:99:0,340,4209 0/0:103,0:103:99:0,301,3727 0/0:96,0:96:99:0,277,3399 0/0:77,0:77:99:0,226,2799 0/0:77,0:77:99:0,211,2599 0/0:92,0:92:99:0,262,3281 1 155706817 . G C 3646.53 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.646;DP=6239;DS;Dels=0.00;FS=1.917;HRun=0;HaplotypeScore=1.8680;InbreedingCoeff=-0.0244;MQ=59.20;MQ0=0;MQRankSum=-0.053;QD=15.01;ReadPosRankSum=0.610 GT:AD:DP:GQ:PL 0/0:105,0:105:99:0,295,3737 0/0:100,0:100:99:0,283,3611 0/0:102,0:102:99:0,295,3718 0/0:250,0:250:99:0,710,9586 0/0:249,0:249:99:0,701,9589 0/0:249,1:250:99:0,664,9540 0/0:250,0:250:99:0,704,9590 0/0:250,0:250:99:0,683,9289 0/1:58,70:129:99:2106,0,1805 0/0:109,0:109:99:0,310,3891 0/1:62,52:114:99:1540,0,1932 0/0:118,0:118:99:0,325,4123 0/0:106,0:106:99:0,307,3818 0/0:118,0:118:99:0,352,4406 0/0:248,0:249:99:0,689,8674 0/0:98,0:99:99:0,274,3454 0/0:107,0:108:99:0,313,3925 0/0:99,0:99:99:0,289,3595 0/0:192,0:192:99:0,530,6632 0/0:159,0:159:99:0,430,5531 0/0:172,0:172:99:0,475,6015 0/0:86,0:86:99:0,232,2935 0/0:248,0:248:99:0,710,9715 0/0:250,0:250:99:0,698,9538 0/0:250,0:250:99:0,683,9404 0/0:250,0:250:99:0,698,9497 0/0:83,0:83:99:0,232,2937 0/0:110,0:110:99:0,304,3864 0/0:106,0:106:99:0,301,3835 0/0:124,0:124:99:0,346,4346 0/0:85,0:85:99:0,250,3124 0/0:141,0:141:99:0,394,4949 0/0:95,0:95:99:0,259,3252 0/0:101,0:101:99:0,289,3628 0/0:115,0:115:99:0,313,3975 0/0:125,0:125:99:0,361,4593 0/0:175,0:175:99:0,475,5967 0/0:105,0:105:99:0,298,3774 0/0:111,0:111:99:0,322,4005 0/0:127,0:127:99:0,364,4591 0/0:110,0:110:99:0,313,3893 0/0:114,0:114:99:0,328,4122 1 155724185 . C A 9831.12 . AC=42;AF=0.500;AN=84;BaseQRankSum=-30.897;DP=4866;DS;Dels=0.00;FS=3200.000;HRun=1;HaplotypeScore=2.7489;InbreedingCoeff=-0.9985;MQ=57.10;MQ0=1;MQRankSum=4.982;QD=2.02;ReadPosRankSum=-28.753 GT:AD:DP:GQ:PL 0/1:54,24:78:99:101,0,1381 0/1:55,34:89:99:124,0,1426 0/1:34,22:56:99:153,0,947 0/1:118,106:224:99:561,0,3391 0/1:87,94:182:99:773,0,2401 0/1:100,72:172:99:295,0,2694 0/1:85,67:152:99:193,0,2132 0/1:82,76:158:99:316,0,2059 0/1:61,34:95:99:186,0,1554 0/1:52,38:90:99:270,0,1371 0/1:48,28:76:99:249,0,1197 0/1:40,17:57:37.81:38,0,956 0/1:41,31:72:99:146,0,960 0/1:40,29:69:99:184,0,936 0/1:133,76:209:99:417,0,3602 0/1:33,31:64:99:167,0,889 0/1:52,41:93:99:306,0,1079 0/1:41,35:76:99:405,0,1088 0/1:105,65:170:99:396,0,2851 0/1:128,85:213:99:122,0,3182 0/1:95,61:156:99:361,0,2245 0/1:83,44:127:15.08:15,0,2266 0/1:125,98:224:99:653,0,3267 0/1:85,63:148:99:228,0,2219 0/1:99,86:185:99:286,0,2761 0/1:83,57:140:99:106,0,2134 0/1:40,32:72:97.27:97,0,971 0/1:44,26:70:73.09:73,0,1181 0/1:35,25:60:99:138,0,899 0/1:42,37:79:99:325,0,1092 0/1:37,34:71:99:150,0,892 0/1:141,68:209:99:101,0,3523 0/1:68,52:120:99:273,0,1737 0/1:50,29:79:99:120,0,1395 0/1:50,34:84:99:168,0,1299 0/1:65,33:98:99:193,0,1744 0/1:116,48:165:32.41:32,0,2970 0/1:56,33:89:99:297,0,1302 0/1:44,23:67:89.38:89,0,1096 0/1:51,34:85:99:206,0,1227 0/1:39,30:69:99:199,0,1006 0/1:44,30:74:99:314,0,1163 1 156214601 . G A 287.06 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.479;DP=1266;Dels=0.00;FS=1.061;HRun=2;HaplotypeScore=1.7169;InbreedingCoeff=-0.0124;MQ=58.79;MQ0=0;MQRankSum=0.670;QD=11.04;ReadPosRankSum=-0.421 GT:AD:DP:GQ:PL 0/0:26,0:26:63.17:0,63,724 0/0:31,0:31:75.14:0,75,801 0/0:15,0:15:39.07:0,39,416 0/0:74,0:74:99:0,211,2503 0/0:58,0:58:99:0,147,1729 0/0:49,0:49:99:0,132,1584 0/0:38,0:38:99:0,108,1225 0/0:35,1:36:96.26:0,96,1124 0/0:21,0:21:51.14:0,51,590 0/0:18,0:18:48.13:0,48,549 0/0:20,0:20:54.12:0,54,587 0/0:13,1:14:15.40:0,15,378 0/0:17,0:18:45.13:0,45,523 0/0:22,0:22:57.11:0,57,620 0/0:67,1:68:99:0,174,1895 0/0:23,0:24:63.08:0,63,683 0/1:14,12:26:99:333,0,376 0/0:24,0:24:60.18:0,60,728 0/0:26,0:26:69.17:0,69,775 0/0:33,0:34:84.22:0,84,958 0/0:52,0:52:99:0,114,1302 0/0:20,0:20:51.10:0,51,550 0/0:71,0:71:99:0,205,2430 0/0:31,0:31:87.21:0,87,1015 0/0:32,0:32:81.19:0,81,926 0/0:31,0:31:93.27:0,93,1116 0/0:18,0:18:48.13:0,48,547 0/0:23,0:23:63.17:0,63,725 0/0:19,0:19:57.15:0,57,641 0/0:17,0:17:36.09:0,36,388 0/0:22,0:22:63.15:0,63,689 0/0:34,0:34:90.22:0,90,999 0/0:40,0:40:99:0,105,1141 0/0:21,0:21:63.16:0,63,696 0/0:22,0:22:60.12:0,60,665 0/0:30,0:30:81.19:0,81,909 0/0:33,2:35:53.26:0,53,923 0/0:19,1:20:51.12:0,51,552 0/0:22,0:22:57.15:0,57,652 0/0:27,0:27:66.14:0,66,740 0/0:15,0:15:42.08:0,42,447 0/0:22,0:22:60.14:0,60,680 1 156214641 . C A 328.98 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.989;DP=1011;Dels=0.00;FS=1.063;HRun=0;HaplotypeScore=1.4048;InbreedingCoeff=-0.0125;MQ=58.70;MQ0=0;MQRankSum=-1.148;QD=15.67;ReadPosRankSum=1.759 GT:AD:DP:GQ:PL 0/0:15,0:15:42.13:0,42,516 0/0:21,0:21:57.17:0,57,699 0/0:10,0:10:27.08:0,27,321 0/0:64,0:64:99:0,156,2055 0/0:56,0:56:99:0,141,1816 0/0:50,0:50:99:0,126,1631 0/0:34,0:34:87.26:0,87,1094 0/0:28,0:28:75.24:0,75,993 0/0:15,0:15:45.14:0,45,557 0/0:12,0:12:36.11:0,36,448 0/0:14,0:14:33.10:0,33,418 0/0:6,0:6:15.03:0,15,171 0/0:10,0:10:30.09:0,30,368 0/0:19,0:19:57.17:0,57,700 0/0:41,1:42:99:0,108,1353 0/0:13,0:13:39.11:0,39,469 0/1:7,14:21:99:375,0,190 0/0:18,0:18:48.13:0,48,589 0/0:27,0:27:75.22:0,75,888 0/0:26,0:26:72.22:0,72,891 0/0:22,1:23:60.15:0,60,725 0/0:10,0:10:27.08:0,27,325 0/0:48,0:48:99:0,129,1689 0/0:23,0:23:63.20:0,63,821 0/0:29,0:29:78.22:0,78,988 0/0:25,0:25:57.18:0,57,773 0/0:22,0:22:60.17:0,60,743 0/0:13,0:13:36.11:0,36,446 0/0:17,0:17:48.15:0,48,604 0/0:17,0:17:42.13:0,42,533 0/0:24,0:24:69.21:0,69,857 0/0:38,0:38:99:0,105,1335 0/0:27,0:27:69.21:0,69,879 0/0:28,0:29:78.21:0,78,942 0/0:16,0:16:48.13:0,48,580 0/0:29,0:29:84.26:0,84,1053 0/0:32,0:32:75.23:0,75,938 0/0:17,0:17:45.13:0,45,532 0/0:15,0:15:42.13:0,42,517 0/0:20,0:20:57.13:0,57,670 0/0:16,0:16:48.14:0,48,579 0/0:20,0:20:60.19:0,60,756 1 156230272 . C T 1215.82 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.517;DP=5480;DS;Dels=0.00;FS=0.567;HRun=0;HaplotypeScore=2.7308;InbreedingCoeff=-0.0120;MQ=59.35;MQ0=0;MQRankSum=1.008;QD=12.66;ReadPosRankSum=1.932 GT:AD:DP:GQ:PL 0/0:98,0:98:99:0,268,3092 0/0:99,0:99:99:0,271,3139 0/0:81,0:81:99:0,214,2507 0/0:217,0:217:99:0,560,6965 0/0:213,0:213:99:0,572,7027 0/0:171,1:172:99:0,411,5525 0/0:167,0:167:99:0,433,5433 0/0:160,0:160:99:0,412,5105 0/0:88,0:88:99:0,241,2853 0/0:88,0:88:99:0,232,2679 0/0:96,0:97:99:0,268,3083 0/0:100,0:100:99:0,277,3143 0/0:84,0:84:99:0,220,2540 0/0:109,0:109:99:0,292,3379 0/0:198,0:198:99:0,496,5834 0/0:114,0:114:99:0,307,3572 0/1:52,44:96:99:1262,0,1347 0/0:96,0:96:99:0,265,3043 0/0:190,1:192:99:0,505,5752 0/0:194,0:194:99:0,505,5991 0/0:182,0:182:99:0,469,5497 0/0:124,0:124:99:0,340,3891 0/0:216,0:216:99:0,569,7148 0/0:143,0:143:99:0,355,4489 0/0:189,0:189:99:0,509,6324 0/0:162,0:162:99:0,412,5242 0/0:69,0:69:99:0,190,2196 0/0:90,0:90:99:0,241,2840 0/0:87,1:89:99:0,229,2708 0/0:90,0:90:99:0,241,2788 0/0:110,0:110:99:0,301,3474 0/0:175,0:175:99:0,424,5108 0/0:127,1:128:99:0,308,3913 0/0:92,0:92:99:0,253,2910 0/0:98,0:98:99:0,256,3048 0/0:109,0:109:99:0,292,3397 0/0:192,0:193:99:0,493,5775 0/0:138,0:139:99:0,346,4065 0/0:80,0:80:99:0,229,2615 0/0:105,0:105:99:0,292,3327 0/0:116,0:116:99:0,310,3647 0/0:118,0:118:99:0,319,3782 1 156347834 . T A 10302.61 . AC=14;AF=0.167;AN=84;BaseQRankSum=-2.772;DP=2438;Dels=0.00;FS=2.527;HRun=0;HaplotypeScore=1.9845;InbreedingCoeff=0.1429;MQ=59.10;MQ0=0;MQRankSum=-0.379;QD=14.93;ReadPosRankSum=-0.420 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1320,111,0 0/1:18,18:37:99:442,0,484 0/0:32,0:32:84.25:0,84,1015 0/0:149,0:151:99:0,358,4368 0/0:131,0:132:99:0,361,4311 0/0:76,0:76:99:0,190,2366 0/0:78,0:78:99:0,202,2469 0/1:51,36:88:99:977,0,1403 0/1:27,26:53:99:621,0,682 0/1:24,13:37:99:332,0,715 0/0:42,0:42:99:0,108,1260 0/0:43,0:43:99:0,108,1305 0/0:35,0:35:96.27:0,96,1128 0/0:34,0:34:90.26:0,90,1059 0/0:136,0:138:99:0,346,4175 0/0:35,0:35:90.23:0,90,1042 0/0:30,0:30:75.22:0,75,900 0/0:36,1:37:62.82:0,63,1070 0/0:72,0:74:99:0,187,2228 0/0:76,0:76:99:0,214,2504 0/0:71,0:73:99:0,187,2235 0/1:22,20:42:99:419,0,631 0/1:73,63:138:99:1717,0,1956 0/1:33,34:69:99:910,0,755 0/0:61,0:61:99:0,177,2091 1/1:0,71:71:99:2158,183,0 0/0:33,0:35:99:0,99,1138 0/0:43,0:44:99:0,117,1381 0/1:8,20:28:99:529,0,168 0/0:38,0:38:99:0,108,1242 0/0:26,0:27:75.21:0,75,875 0/0:72,0:72:99:0,190,2237 0/0:61,0:61:99:0,162,1957 0/0:35,0:36:99:0,99,1177 0/1:26,11:37:99:224,0,787 0/0:42,0:42:99:0,123,1428 0/0:90,0:91:99:0,235,2788 0/0:32,0:32:96.26:0,96,1105 0/0:38,0:38:99:0,99,1155 0/0:51,0:52:99:0,141,1679 0/0:33,0:33:93.26:0,93,1084 0/1:26,23:50:99:652,0,617 1 156446903 . T C 31757.14 . AC=49;AF=0.583;AN=84;BaseQRankSum=-15.548;DP=2144;Dels=0.00;FS=14.978;HRun=0;HaplotypeScore=1.5369;InbreedingCoeff=-0.2245;MQ=59.01;MQ0=0;MQRankSum=0.006;QD=16.95;ReadPosRankSum=-1.392 GT:AD:DP:GQ:PL 0/1:11,17:30:99:433,0,318 1/1:0,36:36:96.24:1044,96,0 1/1:0,44:44:99:1280,120,0 0/1:59,57:119:99:1582,0,1696 0/1:54,50:104:99:1439,0,1600 0/1:34,37:72:99:1108,0,1021 0/1:27,39:67:99:1129,0,771 0/0:79,0:81:99:0,232,2684 1/1:2,36:39:47.22:1039,47,0 1/1:0,29:29:72.17:786,72,0 1/1:0,42:42:99:1276,120,0 0/1:14,10:24:99:263,0,371 0/1:20,18:40:99:458,0,493 0/1:22,14:36:99:336,0,591 0/1:59,44:105:99:1154,0,1623 1/1:0,28:28:72.16:779,72,0 0/1:25,11:36:99:238,0,709 0/1:18,14:33:99:358,0,513 1/1:0,52:52:99:1636,153,0 0/1:40,26:66:99:659,0,1147 1/1:0,57:58:99:1703,156,0 0/1:16,14:30:99:370,0,439 0/1:66,59:127:99:1653,0,1972 0/1:37,39:76:99:1076,0,1017 0/0:68,0:70:99:0,202,2389 0/1:30,32:62:99:924,0,790 1/1:0,18:18:48.13:539,48,0 1/1:0,40:40:99:1242,117,0 0/1:23,17:40:99:295,0,646 0/1:13,26:39:99:638,0,325 0/1:23,24:47:99:591,0,595 1/1:0,56:57:99:1713,156,0 0/1:22,23:45:99:597,0,621 0/1:18,17:36:99:434,0,521 0/0:31,0:32:93.27:0,93,1121 1/1:0,30:30:90.24:992,90,0 0/1:34,23:58:99:570,0,859 0/1:23,20:43:99:503,0,649 0/1:15,18:33:99:493,0,447 0/0:43,0:43:99:0,123,1454 0/1:16,17:33:99:427,0,471 0/0:44,0:44:99:0,129,1465 1 156502870 . C T 3067.78 . AC=4;AF=0.048;AN=84;BaseQRankSum=4.273;DP=3621;Dels=0.00;FS=9.036;HRun=0;HaplotypeScore=2.3019;InbreedingCoeff=-0.0500;MQ=59.12;MQ0=0;MQRankSum=-0.859;QD=10.92;ReadPosRankSum=-0.280 GT:AD:DP:GQ:PL 0/0:83,0:83:99:0,220,2619 0/0:63,0:63:99:0,165,1945 0/0:57,0:57:99:0,159,1857 0/0:149,0:149:99:0,382,4876 0/0:143,0:144:99:0,355,4569 0/0:116,0:116:99:0,307,3889 0/0:87,0:87:99:0,229,2872 0/0:73,0:74:99:0,193,2399 0/0:76,1:77:99:0,202,2387 0/0:71,0:71:99:0,193,2221 0/0:72,0:73:99:0,190,2197 0/0:80,0:80:99:0,214,2559 0/0:52,0:52:99:0,147,1731 0/0:60,0:60:99:0,168,1936 0/0:222,0:222:99:0,548,6558 0/0:81,0:81:99:0,217,2573 0/0:56,0:57:99:0,159,1812 0/0:59,0:60:99:0,165,1906 0/0:120,0:121:99:0,307,3576 0/0:132,0:132:99:0,346,4181 0/0:106,0:106:99:0,274,3152 0/0:84,0:84:99:0,214,2530 0/0:167,0:168:99:0,400,5172 0/0:108,0:108:99:0,262,3387 0/0:125,0:126:99:0,319,4060 0/0:77,0:77:99:0,196,2466 0/0:60,0:60:99:0,165,1921 0/0:72,0:72:99:0,181,2166 0/0:62,0:62:99:0,174,2053 0/1:36,25:61:99:553,0,1026 0/0:83,0:83:99:0,229,2688 0/0:85,1:86:99:0,211,2578 0/1:52,32:84:99:925,0,1322 0/0:63,0:63:99:0,165,1928 0/0:66,0:66:99:0,180,2094 0/0:62,0:62:99:0,165,1920 0/0:85,0:86:99:0,217,2467 0/0:51,0:52:99:0,141,1636 0/0:59,0:59:99:0,159,1839 0/1:42,25:67:99:638,0,1142 0/0:61,0:61:99:0,168,1971 0/1:34,35:69:99:1039,0,886 1 156518379 . G A 20909.26 . AC=26;AF=0.310;AN=84;BaseQRankSum=8.597;DP=2710;Dels=0.00;FS=9.159;HRun=0;HaplotypeScore=1.7985;InbreedingCoeff=-0.0027;MQ=59.17;MQ0=0;MQRankSum=-0.187;QD=16.22;ReadPosRankSum=-0.472 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,165,1858 0/0:54,0:54:99:0,159,1805 0/0:60,0:60:99:0,165,1919 1/1:1,82:83:99:2813,238,0 0/1:42,27:69:99:737,0,1192 0/1:32,24:57:99:629,0,973 0/1:35,22:57:99:581,0,1082 0/0:67,0:68:99:0,187,2323 0/0:50,0:50:99:0,141,1597 0/1:44,22:66:99:578,0,1188 0/0:62,0:62:99:0,171,2003 0/1:34,17:51:99:464,0,921 0/1:22,25:47:99:743,0,569 0/1:25,24:49:99:653,0,693 0/0:174,0:174:99:0,502,5643 0/0:61,0:61:99:0,174,1974 0/0:53,0:53:99:0,150,1737 1/1:1,59:61:99:1993,137,0 0/1:29,31:61:99:898,0,833 0/0:120,0:120:99:0,328,3696 0/0:97,0:97:99:0,274,3147 0/0:70,3:73:99:0,121,2185 0/1:52,40:92:99:1089,0,1593 0/1:24,22:48:99:644,0,718 0/0:57,0:57:99:0,162,1931 0/1:33,31:64:99:877,0,873 1/1:0,39:39:99:1319,114,0 0/1:29,21:50:99:513,0,714 1/1:0,57:58:99:1910,162,0 0/0:60,1:61:99:0,129,1831 0/0:46,0:47:99:0,132,1532 0/0:87,0:87:99:0,238,2693 0/0:59,0:59:99:0,162,1826 0/0:60,0:60:99:0,174,1938 0/1:34,18:52:99:436,0,970 0/1:24,36:61:99:1008,0,584 0/1:39,34:73:99:885,0,1101 0/0:62,0:63:99:0,174,1919 0/1:21,27:48:99:808,0,548 0/0:57,0:57:99:0,153,1756 0/1:31,23:55:99:683,0,842 0/1:26,22:48:99:648,0,702 1 156518479 . C T 856.03 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.075;DP=2092;DS;Dels=0.00;FS=1.600;HRun=1;HaplotypeScore=1.3826;InbreedingCoeff=-0.0120;MQ=58.91;MQ0=0;MQRankSum=0.304;QD=16.15;ReadPosRankSum=1.076 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,111,1384 0/0:33,0:33:93.29:0,93,1178 0/0:46,0:46:99:0,126,1570 0/0:50,0:50:99:0,144,1918 0/0:55,0:55:99:0,157,2108 0/0:46,0:46:99:0,120,1548 0/0:32,0:32:90.29:0,90,1194 0/0:55,0:56:99:0,160,2098 0/0:51,0:51:99:0,135,1714 0/0:47,0:47:99:0,132,1664 0/0:36,0:36:99:0,102,1288 0/0:36,0:36:99:0,99,1243 0/0:43,0:43:99:0,123,1547 0/0:40,0:40:99:0,114,1430 0/0:138,0:138:99:0,388,4842 0/0:55,0:55:99:0,159,1975 0/0:37,0:37:99:0,108,1360 0/0:53,0:53:99:0,147,1878 0/0:62,0:62:99:0,169,2136 0/0:80,0:80:99:0,226,2801 0/0:81,0:81:99:0,223,2778 0/0:56,0:57:99:0,159,1992 0/0:69,0:69:99:0,205,2684 0/0:25,0:25:72.21:0,72,910 0/0:43,0:43:99:0,123,1617 0/1:24,29:53:99:902,0,780 0/0:35,0:35:99:0,102,1253 0/0:34,0:34:99:0,99,1229 0/0:39,0:39:99:0,108,1358 0/0:43,0:43:99:0,123,1541 0/0:37,0:37:99:0,108,1352 0/0:62,0:62:99:0,159,2023 0/0:42,0:42:99:0,123,1556 0/0:52,0:52:99:0,147,1852 0/0:45,0:45:99:0,126,1584 0/0:56,0:56:99:0,156,2006 0/0:62,0:62:99:0,169,2114 0/0:42,0:42:99:0,114,1445 0/0:45,0:45:99:0,126,1573 0/0:39,0:39:99:0,108,1355 0/0:53,0:53:99:0,144,1839 0/0:43,0:43:99:0,120,1516 1 156520110 . C A 72.20 . AC=2;AF=0.024;AN=84;BaseQRankSum=-10.936;DP=1752;Dels=0.00;FS=409.425;HRun=2;HaplotypeScore=1.0946;InbreedingCoeff=-0.0468;MQ=58.65;MQ0=0;MQRankSum=-0.574;QD=0.80;ReadPosRankSum=-9.912 GT:AD:DP:GQ:PL 0/0:25,11:36:66.20:0,66,807 0/0:20,12:32:20.44:0,20,495 0/0:16,12:28:45.14:0,45,565 0/0:35,27:62:84.14:0,84,1090 0/0:27,27:54:1.10:5,0,828 0/0:40,15:55:71.61:0,72,1177 0/0:47,10:57:99:0,99,1316 0/0:42,13:56:65.63:0,66,1163 0/0:15,14:29:10.57:0,11,451 0/0:16,7:23:36.11:0,36,443 0/0:20,9:29:10.98:0,11,534 0/0:11,7:18:0.91:6,0,274 0/0:20,5:25:45.10:0,45,534 0/0:23,8:31:57.17:0,57,705 0/0:95,30:126:99:0,206,2554 0/0:20,8:28:25.52:0,26,600 0/0:31,11:42:81.25:0,81,1019 0/0:18,6:24:45.14:0,45,575 0/1:32,27:59:99:110,0,790 0/0:48,14:62:75.61:0,76,1169 0/0:36,19:56:90.49:0,90,1028 0/0:25,8:33:57.15:0,57,674 0/0:45,19:64:99:0,105,1351 0/0:24,10:34:54.17:0,54,695 0/0:45,16:61:99:0,108,1398 0/0:30,14:44:65.95:0,66,828 0/1:20,11:31:22.66:23,0,434 0/0:16,3:19:45.13:0,45,550 0/0:25,14:39:27.30:0,27,663 0/0:25,6:31:51.16:0,51,631 0/0:18,10:28:39.12:0,39,491 0/0:54,21:76:24.89:0,25,1265 0/0:33,10:43:61.41:0,61,834 0/0:21,6:27:57.18:0,57,721 0/0:28,9:37:46.98:0,47,851 0/0:24,14:38:27.56:0,28,663 0/0:50,23:73:47.57:0,48,1472 0/0:17,9:26:42.13:0,42,530 0/0:19,8:27:51.15:0,51,619 0/0:16,11:27:33.09:0,33,392 0/0:16,5:21:48.15:0,48,590 0/0:27,14:41:57.18:0,57,731 1 156524089 . G A 2415.75 . AC=37;AF=0.440;AN=84;BaseQRankSum=-15.803;DP=2055;Dels=0.00;FS=606.365;HRun=2;HaplotypeScore=0.9102;InbreedingCoeff=-0.7648;MQ=58.02;MQ0=1;MQRankSum=-0.676;QD=1.38;ReadPosRankSum=-11.859 GT:AD:DP:GQ:PL 0/1:26,11:37:88.47:88,0,651 0/1:19,12:31:77.61:78,0,543 0/1:31,14:45:54.81:55,0,654 0/1:48,58:107:99:342,0,972 0/1:39,45:84:99:234,0,954 0/1:47,25:72:58.95:59,0,863 0/1:45,24:69:35.53:36,0,732 0/0:37,28:65:13.37:0,13,960 0/1:17,10:27:63.20:63,0,274 0/1:13,13:26:67.47:67,0,224 0/1:25,16:41:32.11:32,0,531 0/1:32,13:45:12.58:13,0,697 0/1:15,5:20:47.53:48,0,190 0/1:26,18:44:99:114,0,536 0/1:64,39:105:99:206,0,1348 0/1:21,14:36:30.61:31,0,454 0/1:13,10:23:20.84:21,0,328 0/1:19,12:31:27.69:28,0,346 0/1:30,14:44:81.15:81,0,666 0/0:73,22:96:55.90:0,56,1682 0/1:38,23:61:60.67:61,0,764 0/1:32,17:49:55.79:56,0,701 0/1:45,52:98:79.73:80,0,1149 0/1:40,17:57:24.46:24,0,783 0/1:37,34:71:60.42:60,0,716 0/1:36,21:57:2.66:0,1,885 0/1:19,15:34:99:123,0,543 0/1:21,10:31:4.95:5,0,566 0/1:13,9:22:21.09:21,0,335 0/1:19,13:33:50.26:50,0,495 0/1:24,20:44:34.51:35,0,418 0/0:50,19:69:1.84:0,2,898 0/1:22,14:36:97.49:97,0,411 0/0:30,11:41:28.96:0,29,857 0/1:19,18:38:29.56:30,0,191 0/1:30,15:46:40.31:40,0,713 0/1:28,23:52:71.44:71,0,432 0/0:27,6:33:43.44:0,43,701 0/1:18,12:31:8.02:8,0,459 0/1:20,13:33:13.75:14,0,474 0/1:22,9:31:65.95:66,0,521 0/1:24,16:40:99:147,0,650 1 156526387 . C G 35282.09 . AC=50;AF=0.595;AN=84;BaseQRankSum=-5.625;DP=1816;Dels=0.00;FS=12.307;HRun=0;HaplotypeScore=1.1274;InbreedingCoeff=0.2094;MQ=58.19;MQ0=0;MQRankSum=0.513;QD=24.71;ReadPosRankSum=-2.639 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1903,156,0 1/1:0,39:39:99:1367,111,0 1/1:0,39:40:99:1276,105,0 0/0:55,0:55:99:0,156,2050 0/0:45,0:45:99:0,132,1744 1/1:1,34:35:58.64:1177,59,0 0/1:11,13:24:99:386,0,339 1/1:0,26:26:72.23:953,72,0 1/1:0,37:37:99:1224,99,0 0/1:15,14:29:99:426,0,425 1/1:0,31:31:84.24:1019,84,0 0/1:18,16:34:99:402,0,554 0/1:8,12:20:99:328,0,240 0/1:23,14:37:99:410,0,658 1/1:0,114:114:99:3707,307,0 1/1:0,63:63:99:2255,184,0 1/1:0,45:45:99:1593,129,0 0/0:42,1:43:92.35:0,92,1466 0/1:33,14:47:99:313,0,970 1/1:0,55:55:99:1926,156,0 1/1:0,34:35:90.27:1101,90,0 0/1:22,13:35:99:360,0,641 0/1:34,26:60:99:739,0,1080 0/1:14,16:30:99:436,0,457 1/1:0,29:29:81.25:1057,81,0 0/0:34,0:34:90.29:0,90,1174 0/0:25,0:25:72.21:0,72,892 0/1:24,24:48:99:700,0,701 0/0:44,1:45:99:0,104,1577 0/1:26,28:54:99:834,0,731 1/1:0,42:42:99:1524,123,0 1/1:0,50:50:99:1590,129,0 0/1:22,21:44:99:624,0,667 1/1:0,44:44:99:1437,117,0 0/1:18,23:41:99:725,0,503 0/1:17,30:47:99:899,0,448 0/1:28,19:47:99:548,0,753 1/1:0,43:43:99:1422,117,0 0/1:26,22:48:99:620,0,705 0/0:50,0:50:99:0,141,1730 0/0:36,2:38:33.98:0,34,1140 0/0:53,0:53:99:0,147,1796 1 156526430 . G A 633.02 . AC=3;AF=0.036;AN=84;BaseQRankSum=-6.169;DP=929;Dels=0.00;FS=3.985;HRun=0;HaplotypeScore=0.9685;InbreedingCoeff=-0.0372;MQ=57.19;MQ0=0;MQRankSum=0.043;QD=9.17;ReadPosRankSum=1.538 GT:AD:DP:GQ:PL 0/0:21,0:22:51.16:0,51,631 0/0:21,0:21:54.16:0,54,653 0/0:21,0:21:51.15:0,51,610 0/0:29,0:29:81.26:0,81,1059 0/1:18,12:30:99:273,0,530 0/0:29,0:30:75.19:0,75,936 0/0:17,0:17:51.15:0,51,646 0/0:18,0:18:42.14:0,42,571 0/0:20,0:20:51.16:0,51,642 0/0:16,0:18:42.11:0,42,499 0/0:14,0:14:30.07:0,30,353 0/0:13,0:13:39.11:0,39,463 0/0:14,0:14:39.12:0,39,470 0/0:23,0:23:51.15:0,51,628 0/0:41,0:42:99:0,114,1370 0/0:30,0:30:75.23:0,75,917 0/0:24,1:25:20.73:0,21,595 0/0:17,0:17:48.14:0,48,576 0/0:16,0:16:42.14:0,42,540 0/0:41,0:42:99:0,105,1321 0/0:32,0:32:78.23:0,78,961 0/1:7,8:16:99:223,0,188 0/0:25,0:25:75.25:0,75,1018 0/0:12,0:12:30.10:0,30,397 0/0:25,0:27:66.22:0,66,891 0/1:13,10:23:99:213,0,440 0/0:9,0:9:27.09:0,27,341 0/0:28,0:28:75.23:0,75,912 0/0:21,0:21:57.17:0,57,690 0/0:26,0:26:72.22:0,72,891 0/0:18,0:18:48.14:0,48,592 0/0:28,0:29:78.25:0,78,990 0/0:26,0:26:63.20:0,63,783 0/0:16,0:17:39.12:0,39,480 0/0:11,0:11:33.10:0,33,411 0/0:29,0:29:81.24:0,81,983 0/0:22,0:22:60.18:0,60,748 0/0:20,0:20:57.15:0,57,688 0/0:18,0:18:54.16:0,54,669 0/0:27,0:27:75.23:0,75,918 0/0:15,0:16:39.11:0,39,468 0/0:15,0:15:42.13:0,42,512 1 156526434 . G C 30.89 . AC=4;AF=0.048;AN=84;BaseQRankSum=-8.166;DP=1185;Dels=0.00;FS=129.849;HRun=2;HaplotypeScore=2.1704;InbreedingCoeff=-0.0816;MQ=57.39;MQ0=0;MQRankSum=1.752;QD=0.36;ReadPosRankSum=-6.157 GT:AD:DP:GQ:PL 0/0:18,5:23:45.14:0,45,555 0/0:15,5:21:39.12:0,39,479 0/0:21,5:26:42.13:0,42,509 0/0:29,5:34:78.25:0,78,1024 0/0:29,7:36:66.21:0,66,863 0/0:32,3:35:81.25:0,81,1046 0/0:14,7:21:36.12:0,36,469 0/0:14,6:20:36.12:0,36,493 0/0:21,9:30:48.15:0,48,591 0/0:16,8:24:2.34:1,0,304 0/1:16,10:26:48.77:49,0,336 0/0:13,0:13:27.08:0,27,331 0/0:18,3:21:36.11:0,36,435 0/0:22,6:28:48.15:0,48,596 0/0:38,18:56:72.59:0,73,1103 0/0:27,7:34:69.21:0,69,853 0/0:24,8:32:45.13:0,45,545 0/0:12,6:18:33.09:0,33,379 0/1:17,6:23:21.92:22,0,420 0/0:46,5:51:99:0,111,1350 0/0:30,7:37:10.93:0,11,721 0/0:17,8:25:23.44:0,23,484 0/0:27,6:33:78.25:0,78,1051 0/0:12,5:17:24.08:0,24,311 0/0:28,5:33:60.20:0,60,804 0/0:28,2:30:57.18:0,57,743 0/1:7,4:11:12.54:13,0,173 0/0:26,5:31:63.19:0,63,779 0/1:18,9:27:28.47:28,0,534 0/0:25,11:36:1.60:3,0,671 0/0:19,10:29:18.53:0,19,541 0/0:33,11:44:81.23:0,81,1007 0/0:25,9:34:32.77:0,33,754 0/0:14,6:20:33.10:0,33,403 0/0:13,5:18:27.09:0,27,338 0/0:29,7:36:69.22:0,69,862 0/0:18,6:25:51.16:0,51,634 0/0:21,7:28:48.15:0,48,596 0/0:17,9:26:0.79:7,0,552 0/0:20,12:32:29.59:0,30,678 0/0:15,7:22:32.47:0,32,379 0/0:12,7:19:6.48:0,6,367 1 156526444 . T C 46488.26 . AC=82;AF=0.976;AN=84;BaseQRankSum=4.865;DP=1426;Dels=0.00;FS=2.498;HRun=2;HaplotypeScore=1.6551;InbreedingCoeff=-0.0244;MQ=56.50;MQ0=0;MQRankSum=0.908;QD=32.60;ReadPosRankSum=0.245 GT:AD:DP:GQ:PL 1/1:0,33:33:99:1197,99,0 1/1:0,23:23:63.18:761,63,0 1/1:0,33:33:93.25:1110,93,0 1/1:0,52:52:99:1691,132,0 1/1:0,37:37:99:1268,99,0 1/1:0,28:28:75.23:949,75,0 1/1:0,29:29:81.24:1023,81,0 1/1:0,27:27:75.21:957,75,0 1/1:0,37:37:99:1276,102,0 1/1:0,27:27:69.19:847,69,0 1/1:0,31:31:81.22:992,81,0 1/1:0,17:17:51.13:605,51,0 1/1:0,24:24:63.18:760,63,0 1/1:0,32:32:93.28:1159,93,0 1/1:0,65:65:99:1942,159,0 1/1:0,33:33:81.25:1009,81,0 1/1:0,38:38:99:1341,108,0 1/1:0,22:22:66.18:775,66,0 1/1:0,38:38:99:1153,99,0 1/1:0,64:64:99:2195,181,0 1/1:0,45:45:99:1225,102,0 1/1:0,36:36:99:1230,99,0 1/1:0,43:43:99:1440,114,0 1/1:0,21:21:63.19:801,63,0 1/1:0,36:36:90.28:1179,90,0 1/1:0,33:33:93.28:1183,93,0 1/1:0,13:13:36.10:440,36,0 1/1:0,32:32:84.25:1011,84,0 1/1:0,28:28:78.24:961,78,0 1/1:0,36:36:99:1261,99,0 1/1:0,30:30:87.26:1064,87,0 1/1:0,52:52:99:1780,141,0 1/1:0,42:42:99:1339,108,0 1/1:0,22:22:60.18:733,60,0 1/1:0,29:29:84.24:1006,84,0 1/1:0,42:42:99:1453,117,0 1/1:0,31:31:81.22:954,81,0 1/1:0,25:25:72.23:902,72,0 1/1:0,34:34:99:1213,99,0 0/1:16,20:36:99:603,0,381 0/1:16,13:29:99:354,0,457 1/1:0,41:41:99:1345,111,0 1 156526456 . C T 612.25 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.964;DP=1642;Dels=0.00;FS=5.735;HRun=3;HaplotypeScore=0.6141;InbreedingCoeff=-0.0120;MQ=57.26;MQ0=0;MQRankSum=0.986;QD=14.24;ReadPosRankSum=0.580 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,117,1466 0/0:25,0:25:66.20:0,66,815 0/0:42,0:42:99:0,111,1358 0/0:56,0:56:99:0,144,1863 0/0:36,0:36:99:0,105,1348 0/0:30,0:30:78.25:0,78,1023 0/0:32,0:32:93.28:0,93,1186 0/0:33,0:33:93.29:0,93,1177 0/0:42,0:42:99:0,123,1476 0/0:32,0:32:93.29:0,93,1156 0/0:31,0:31:81.25:0,81,1025 0/0:21,0:22:60.19:0,60,743 0/0:25,0:25:69.20:0,69,828 0/0:41,0:41:99:0,117,1461 0/0:83,0:83:99:0,226,2738 0/0:34,0:34:90.29:0,90,1148 0/0:41,0:41:99:0,108,1385 0/0:25,0:25:72.21:0,72,879 0/0:48,0:48:99:0,138,1675 0/0:73,0:73:99:0,193,2368 0/0:53,0:55:99:0,147,1753 0/0:42,0:42:99:0,114,1396 0/0:52,0:52:99:0,147,1864 0/0:21,0:21:63.19:0,63,821 0/1:18,24:43:99:658,0,465 0/0:37,0:37:93.27:0,93,1221 0/0:20,0:20:57.18:0,57,725 0/0:36,0:36:96.29:0,96,1188 0/0:33,0:33:90.28:0,90,1131 0/0:42,0:42:99:0,108,1331 0/0:36,0:36:93.27:0,93,1156 0/0:56,0:56:99:0,153,1910 0/0:40,0:40:99:0,108,1362 0/0:23,0:23:66.20:0,66,828 0/0:39,0:39:99:0,114,1389 0/0:41,0:42:99:0,111,1315 0/0:36,0:36:99:0,99,1219 0/0:36,0:36:99:0,102,1269 0/0:41,0:41:99:0,117,1451 0/0:37,0:37:99:0,99,1196 0/0:33,0:33:99:0,99,1243 0/0:48,0:48:99:0,135,1700 1 156555819 . A G 58.37 . AC=1;AF=0.012;AN=82;BaseQRankSum=0.090;DP=256;Dels=0.00;FS=2.350;HRun=0;HaplotypeScore=0.4425;InbreedingCoeff=0.3421;MQ=57.66;MQ0=0;MQRankSum=1.538;QD=14.59;ReadPosRankSum=-0.269 GT:AD:DP:GQ:PL 0/0:4,0:4:12.04:0,12,143 0/0:9,0:9:24.07:0,24,292 0/0:5,0:5:15.04:0,15,170 0/0:4,0:4:12.03:0,12,131 0/0:4,0:4:6.02:0,6,72 0/0:2,0:2:6.02:0,6,77 0/1:1,3:4:0.51:113,9,0 0/0:4,0:4:9.02:0,9,106 0/0:8,0:8:21.06:0,21,241 0/0:4,0:4:12.03:0,12,141 0/0:5,0:5:12.04:0,12,152 0/0:6,0:6:18.05:0,18,213 0/0:6,0:6:12.04:0,12,155 0/0:5,0:5:9.03:0,9,121 0/0:31,0:31:87.26:0,87,1032 0/0:2,0:2:6.02:0,6,73 0/0:5,0:5:12.04:0,12,149 0/0:3,0:3:9.03:0,9,107 0/0:12,0:12:33.09:0,33,380 0/0:11,0:11:27.08:0,27,325 0/0:7,0:7:18.05:0,18,211 0/0:5,0:5:9.02:0,9,105 0/0:3,0:4:9.03:0,9,105 0/0:5,0:5:15.05:0,15,186 0/0:2,0:2:6.01:0,6,59 ./. 0/0:3,0:3:9.03:0,9,114 0/0:6,0:6:15.05:0,15,188 0/0:7,0:7:12.03:0,12,138 0/0:2,0:2:6.02:0,6,70 0/0:5,0:5:15.04:0,15,167 0/0:14,0:14:36.11:0,36,438 0/0:10,0:10:30.09:0,30,352 0/0:7,1:8:12.04:0,12,144 0/0:6,0:6:18.05:0,18,214 0/0:9,0:9:24.07:0,24,289 0/0:8,0:8:21.06:0,21,251 0/0:5,0:5:12.03:0,12,140 0/0:5,0:5:15.04:0,15,175 0/0:5,0:5:12.04:0,12,149 0/0:4,0:4:9.02:0,9,104 0/0:2,0:2:6.02:0,6,76 1 156555827 . C A 28.10 . AC=9;AF=0.115;AN=78;BaseQRankSum=-5.825;DP=326;Dels=0.00;FS=49.697;HRun=2;HaplotypeScore=0.3253;InbreedingCoeff=-0.1907;MQ=57.90;MQ0=0;MQRankSum=0.618;QD=0.32;ReadPosRankSum=-3.019 GT:AD:DP:GQ:PL 0/1:3,6:9:24.41:24,0,67 0/1:7,4:11:14.44:14,0,169 0/0:4,3:7:9.03:0,9,109 ./. 0/0:2,4:6:3.01:0,3,41 0/0:1,4:5:3.01:0,3,40 0/1:3,5:8:13.70:14,0,52 0/0:5,4:9:6.02:0,6,80 0/0:6,3:9:15.04:0,15,174 0/0:5,2:7:12.03:0,12,131 0/0:4,1:5:9.03:0,9,116 0/0:5,3:8:12.04:0,12,151 0/1:3,2:5:19.52:20,0,91 0/0:5,0:5:9.03:0,9,121 0/0:25,6:31:35.61:0,36,759 0/0:5,2:7:9.03:0,9,114 0/0:5,3:8:9.03:0,9,116 0/0:2,0:2:3.01:0,3,39 0/0:8,3:11:23.44:0,23,259 0/0:9,3:12:21.06:0,21,260 0/1:5,6:11:18.08:18,0,167 0/0:3,2:5:6.02:0,6,78 0/0:3,2:5:9.03:0,9,109 0/0:6,2:8:9.03:0,9,116 ./. ./. 0/0:3,2:5:9.03:0,9,111 0/1:6,2:8:16.50:17,0,137 0/0:3,5:8:6.02:0,6,68 0/0:1,1:2:3.01:0,3,39 0/0:6,4:11:9:0,9,98 0/1:13,5:18:14.28:14,0,324 0/0:8,1:9:24.05:0,24,269 0/0:5,4:9:6.02:0,6,78 0/0:4,1:5:9.03:0,9,115 0/1:9,3:12:6.35:6,0,272 0/0:6,3:9:15.05:0,15,187 0/0:4,1:5:9.03:0,9,108 0/1:4,3:7:13.65:14,0,104 0/0:5,2:7:9.03:0,9,114 0/0:4,1:5:9.03:0,9,105 0/0:4,2:6:9:0,9,98 1 156561651 . G C 17704.77 . AC=79;AF=0.940;AN=84;BaseQRankSum=5.227;DP=583;Dels=0.00;FS=11.005;HRun=1;HaplotypeScore=0.7840;InbreedingCoeff=0.2095;MQ=57.61;MQ0=0;MQRankSum=1.811;QD=30.37;ReadPosRankSum=-0.413 GT:AD:DP:GQ:PL 1/1:0,9:10:21.06:249,21,0 1/1:0,11:11:30.08:366,30,0 1/1:0,10:10:27.08:335,27,0 1/1:0,41:41:99:1405,108,0 1/1:0,32:32:87.24:1071,87,0 1/1:0,15:15:36.11:479,36,0 1/1:0,15:15:45.14:588,45,0 1/1:0,16:16:45.13:540,45,0 1/1:0,8:8:24.07:297,24,0 1/1:0,15:15:42.11:499,42,0 1/1:0,10:10:30.09:357,30,0 1/1:0,9:9:27.08:325,27,0 1/1:0,8:8:21.06:253,21,0 1/1:0,9:9:21.06:256,21,0 1/1:0,29:29:66.16:784,66,0 1/1:0,23:23:60.19:744,60,0 1/1:0,17:17:45.14:571,45,0 1/1:0,10:10:27.08:316,27,0 1/1:1,13:14:30.07:356,30,0 1/1:0,18:18:48.14:573,48,0 1/1:0,12:12:30.09:373,30,0 1/1:0,7:7:18.06:221,18,0 1/1:0,26:26:66.21:854,66,0 1/1:0,18:18:48.15:628,48,0 1/1:0,21:21:54.15:706,54,0 1/1:0,15:15:33.11:447,33,0 1/1:0,3:3:9.02:100,9,0 1/1:0,8:8:24.07:289,24,0 1/1:0,16:16:45.12:530,45,0 0/1:7,9:16:64.91:265,0,65 1/1:0,7:7:21.07:268,21,0 1/1:0,20:20:48.14:595,48,0 0/1:8,9:17:99:253,0,179 1/1:0,8:8:18.05:212,18,0 1/1:0,8:8:24.08:300,24,0 1/1:0,9:9:27.08:331,27,0 1/1:0,12:13:21.04:243,21,0 1/1:0,10:10:24.07:293,24,0 1/1:0,9:9:27.06:310,27,0 0/1:4,1:5:0.97:0,6,63 0/1:6,4:10:60.69:61,0,125 0/1:3,2:5:63.56:64,0,74 1 156618610 . C CT 460.16 . AC=10;AF=0.119;AN=84;BaseQRankSum=-6.888;DP=4901;DS;FS=1912.573;HRun=2;HaplotypeScore=315.9186;InbreedingCoeff=-0.1398;MQ=59.28;MQ0=3;MQRankSum=3.324;QD=0.49;ReadPosRankSum=-23.797 GT:AD:DP:GQ:PL 0/0:70,0:70:99:0,102,1562 0/0:92,0:92:11.98:0,12,1737 0/1:65,0:65:99:105,0,1254 0/0:207,0:207:99:0,122,4521 0/0:210,0:210:99:0,250,5086 0/0:193,0:188:99:0,164,4562 0/0:139,0:137:45.13:0,45,2787 0/0:140,0:134:99:0,261,3505 0/0:86,9:94:71.63:0,72,2124 0/1:74,0:74:74.42:74,0,1200 0/1:87,0:87:62.17:62,0,1805 0/0:63,13:76:27.42:0,27,1518 0/0:68,0:68:29.13:0,29,1358 0/0:82,0:82:38.75:0,39,1844 0/0:198,39:236:99:0,101,4784 0/0:78,0:78:27.59:0,28,1466 0/1:81,0:81:29.33:29,0,1605 0/0:80,0:79:95.21:0,95,1817 0/0:153,0:153:34:0,34,2715 0/0:236,0:236:99:0,140,5853 0/1:154,0:153:42.81:43,0,2926 0/0:123,0:123:59.50:0,60,2527 0/0:216,0:216:99:0,146,4895 0/0:134,0:129:99:0,117,3054 0/0:146,0:139:99:0,168,3561 0/0:157,0:151:99:0,132,3473 0/0:51,7:58:34.62:0,35,1141 0/1:68,0:68:23.41:23,0,1350 0/0:80,0:80:99:0,139,2037 0/0:76,0:76:12.33:0,12,1555 0/0:72,0:72:45.55:0,46,1471 0/0:208,22:230:99:0,323,6090 0/0:134,1:135:99:0,245,3392 0/0:78,0:78:26.68:0,27,1645 0/0:76,0:76:98.80:0,99,1769 0/1:91,0:91:13.48:13,0,1823 0/1:139,33:172:99:132,0,3233 0/1:76,0:76:43.88:44,0,1476 0/0:64,0:64:24.95:0,25,1389 0/0:69,11:80:68.17:0,68,1961 0/0:71,0:71:5.37:0,5,1551 0/1:80,0:80:75.65:76,0,1635 1 156618613 . C T 206.84 . AC=7;AF=0.083;AN=84;BaseQRankSum=-23.908;DP=4859;DS;Dels=0.00;FS=1068.645;HRun=2;HaplotypeScore=8.6466;InbreedingCoeff=-0.0990;MQ=59.15;MQ0=3;MQRankSum=-1.879;QD=0.34;ReadPosRankSum=-17.410 GT:AD:DP:GQ:PL 0/0:59,13:72:99:0,104,1665 0/0:75,22:97:77.02:0,77,1877 0/1:50,15:65:32.57:33,0,1305 0/0:174,40:214:99:0,238,4861 0/0:175,31:206:99:0,315,5278 0/0:166,28:194:99:0,316,4896 0/0:112,24:137:99:0,102,2901 0/0:122,15:138:99:0,248,3402 0/0:87,7:94:99:0,213,2441 0/1:57,15:72:18.43:18,0,1194 0/1:65,21:86:16.15:16,0,1714 0/0:74,2:76:99:0,168,1915 0/0:58,14:72:8.87:0,9,1275 0/0:70,14:84:61.95:0,62,1881 0/0:219,7:226:99:0,437,5717 0/0:64,15:79:20.78:0,21,1462 0/0:61,18:79:53.35:0,53,1615 0/0:64,12:76:99:0,134,1739 0/0:110,36:147:13.84:0,14,2667 0/0:198,32:230:99:0,296,5879 0/1:125,29:154:76.55:77,0,2561 0/0:99,23:122:31.69:0,32,2475 0/0:173,40:213:99:0,179,5080 0/0:106,25:131:99:0,127,2953 0/0:122,20:143:99:0,213,3672 0/0:123,33:157:99:0,165,3540 0/0:53,0:53:99:0,105,1232 0/1:56,14:71:29.50:29,0,1267 0/0:69,10:80:99:0,125,1944 0/0:63,14:78:34.51:0,35,1643 0/0:60,11:71:32.26:0,32,1440 0/0:213,4:218:99:0,473,6181 0/0:117,16:133:99:0,233,3089 0/0:63,11:74:8.86:0,9,1575 0/0:67,10:77:99:0,141,1904 0/0:71,22:93:15.83:0,16,1678 0/0:158,4:162:99:0,343,4152 0/1:60,16:77:71.16:71,0,1511 0/0:57,10:67:27.79:0,28,1394 0/0:80,2:82:99:0,204,2396 0/0:56,16:72:3.68:0,4,1422 0/1:65,20:85:74.76:75,0,1488 1 156627996 . T C 1086.69 . 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C A 18946.39 . AC=40;AF=0.476;AN=84;BaseQRankSum=-23.997;DP=1431;Dels=0.00;FS=1.294;HRun=0;HaplotypeScore=0.5191;InbreedingCoeff=-0.2409;MQ=59.09;MQ0=0;MQRankSum=0.620;QD=17.32;ReadPosRankSum=0.006 GT:AD:DP:GQ:PL 0/1:6,14:20:99:405,0,175 0/1:17,15:32:99:394,0,504 0/1:12,12:24:99:330,0,387 0/0:39,0:39:96.31:0,96,1315 0/0:32,0:32:84.28:0,84,1158 0/0:29,0:29:78.26:0,78,1071 0/0:29,0:29:78.26:0,78,1080 0/1:10,15:25:99:423,0,309 0/1:9,9:18:99:243,0,286 0/1:9,10:19:99:309,0,283 0/1:13,22:35:99:561,0,379 0/1:18,17:35:99:466,0,564 1/1:0,29:29:72.22:902,72,0 0/1:18,13:31:99:365,0,567 0/0:106,0:106:99:0,250,3299 0/0:21,0:21:60.18:0,60,754 0/1:11,11:22:99:295,0,303 0/1:12,9:21:99:239,0,364 1/1:0,70:70:99:2272,184,0 0/1:36,29:65:99:694,0,1096 0/1:38,36:74:99:948,0,1066 0/1:24,18:42:99:453,0,641 0/1:26,18:44:99:464,0,704 0/0:30,0:30:75.25:0,75,1048 0/1:19,11:30:99:338,0,551 0/0:18,0:18:48.16:0,48,668 1/1:0,19:19:48.15:611,48,0 0/1:12,24:36:99:685,0,295 1/1:0,20:20:51.15:616,51,0 0/1:10,12:22:99:350,0,318 1/1:0,17:17:45.14:560,45,0 0/1:34,37:71:99:1003,0,994 0/1:16,14:30:99:393,0,510 0/1:9,16:25:99:451,0,276 1/1:0,19:19:45.14:578,45,0 0/1:21,18:39:99:495,0,596 0/1:21,26:47:99:672,0,554 0/0:33,0:33:81.26:0,81,1048 0/1:12,17:29:99:483,0,349 0/1:11,15:26:99:434,0,320 0/1:11,14:25:99:408,0,340 1/1:0,33:33:90.28:1106,90,0 1 156785810 . C G 509.55 . 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G A 11601.29 . AC=19;AF=0.226;AN=84;BaseQRankSum=-14.365;DP=1535;Dels=0.00;FS=0.432;HRun=1;HaplotypeScore=1.1998;InbreedingCoeff=0.1158;MQ=59.08;MQ0=0;MQRankSum=-1.360;QD=16.69;ReadPosRankSum=1.490 GT:AD:DP:GQ:PL 0/1:17,13:31:99:331,0,456 0/0:41,0:41:99:0,108,1392 0/0:23,0:23:63.20:0,63,783 1/1:0,58:58:99:1912,156,0 0/1:35,22:57:99:610,0,1088 0/1:24,21:45:99:630,0,726 0/1:24,16:40:99:434,0,680 0/1:34,11:45:99:272,0,956 0/0:24,0:24:72.22:0,72,888 0/0:27,0:27:78.25:0,78,1004 0/0:25,0:25:66.21:0,66,839 0/0:22,0:22:57.17:0,57,728 0/0:22,0:22:57.18:0,57,729 0/0:35,0:35:93.30:0,93,1201 1/1:0,86:86:99:2407,190,0 1/1:0,31:31:81.25:1000,81,0 0/1:8,20:28:99:598,0,221 0/0:27,0:27:75.23:0,75,938 0/0:42,0:42:93.29:0,93,1186 0/1:39,25:64:99:597,0,1071 0/0:50,0:51:99:0,129,1635 0/0:41,0:41:99:0,117,1469 0/1:41,20:61:99:554,0,1288 0/0:39,0:39:99:0,102,1342 0/0:39,0:39:99:0,102,1364 0/1:18,11:29:99:304,0,561 0/0:21,0:21:54.17:0,54,690 0/0:17,0:17:48.14:0,48,585 0/0:28,0:28:75.24:0,75,950 0/0:27,0:27:72.23:0,72,927 0/0:19,0:19:45.15:0,45,601 0/0:59,0:59:99:0,147,1905 0/0:37,0:37:90.29:0,90,1188 0/1:12,23:35:99:656,0,305 0/1:13,17:30:99:514,0,317 0/0:32,0:32:78.25:0,78,1006 0/0:54,0:54:99:0,129,1667 0/0:34,0:34:96.30:0,96,1196 0/0:28,0:28:72.22:0,72,913 0/1:9,16:25:99:452,0,248 0/0:26,0:26:63.20:0,63,805 0/1:18,12:30:99:328,0,469 1 156848918 . C T 3391.48 . 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G T 3164.47 . AC=5;AF=0.060;AN=84;BaseQRankSum=-4.763;DP=1360;Dels=0.00;FS=0.368;HRun=1;HaplotypeScore=2.0543;InbreedingCoeff=0.3620;MQ=58.70;MQ0=0;MQRankSum=-0.503;QD=18.51;ReadPosRankSum=1.589 GT:AD:DP:GQ:PL 0/1:12,6:18:99:148,0,376 0/0:28,0:28:72.18:0,72,863 0/0:26,1:27:69.22:0,69,856 1/1:2,44:46:99:1464,120,0 0/1:24,26:50:99:691,0,657 0/0:32,0:32:87.27:0,87,1114 0/0:36,0:36:93.29:0,93,1212 0/0:32,0:32:81.24:0,81,1055 0/0:22,0:22:63.20:0,63,784 0/0:15,0:15:42.12:0,42,501 0/0:15,0:15:42.12:0,42,511 0/0:26,0:26:75.19:0,75,909 0/0:16,0:16:39.12:0,39,493 0/0:25,0:25:72.20:0,72,892 0/0:84,0:84:99:0,214,2593 0/0:32,0:32:93.28:0,93,1143 0/0:25,0:25:72.22:0,72,881 0/0:18,0:18:54.16:0,54,656 0/0:53,1:54:99:0,111,1611 0/0:53,0:53:99:0,132,1657 0/0:44,0:44:99:0,117,1358 0/0:48,0:48:99:0,132,1631 0/1:24,33:57:99:964,0,691 0/0:36,0:36:99:0,105,1362 0/0:47,0:47:99:0,126,1658 0/0:37,1:38:80.63:0,81,1262 0/0:29,0:29:75.23:0,75,932 0/0:30,0:30:87.26:0,87,1068 0/0:13,0:13:36.11:0,36,431 0/0:26,0:26:75.23:0,75,926 0/0:21,0:21:63.18:0,63,755 0/0:42,0:42:99:0,111,1391 0/0:23,0:23:63.20:0,63,788 0/0:22,0:22:57.18:0,57,735 0/0:14,0:14:36.12:0,36,458 0/0:32,0:32:87.27:0,87,1094 0/0:37,0:37:90.23:0,90,1055 0/0:40,0:40:99:0,117,1412 0/0:35,0:35:96.29:0,96,1183 0/0:29,0:29:72.22:0,72,877 0/0:21,0:21:60.19:0,60,744 0/0:22,0:22:63.18:0,63,769 1 156848995 . C T 20459.70 . AC=60;AF=0.714;AN=84;BaseQRankSum=7.556;DP=883;Dels=0.00;FS=20.832;HRun=0;HaplotypeScore=0.9782;InbreedingCoeff=-0.1713;MQ=55.95;MQ0=0;MQRankSum=-1.972;QD=24.16;ReadPosRankSum=0.906 GT:AD:DP:GQ:PL 1/1:0,18:18:48.15:578,48,0 0/1:10,4:14:99:106,0,276 0/1:4,12:16:78.04:362,0,78 1/1:0,31:31:93.27:1126,93,0 1/1:0,41:41:99:1368,111,0 0/1:11,12:23:99:324,0,306 0/1:13,10:24:99:307,0,352 0/0:21,0:21:63.19:0,63,755 1/1:0,20:20:57.17:681,57,0 1/1:0,18:18:48.14:564,48,0 1/1:0,15:15:45.14:541,45,0 0/0:14,1:15:12.49:0,12,418 0/1:6,6:12:99:101,0,172 0/1:11,6:17:99:157,0,308 0/1:29,19:48:99:412,0,672 0/1:11,10:21:99:269,0,335 0/1:10,3:13:68.29:68,0,293 1/1:0,17:17:51.16:615,51,0 1/1:0,28:28:75.22:884,75,0 0/1:18,12:30:99:358,0,403 0/1:11,21:32:99:656,0,215 1/1:0,28:28:81.25:983,81,0 1/1:0,33:34:93.28:1115,93,0 1/1:0,19:19:54.17:663,54,0 0/1:15,14:29:99:380,0,433 0/1:9,10:19:99:274,0,237 0/1:8,10:18:99:312,0,228 1/1:0,19:20:54.15:637,54,0 0/1:3,2:5:58.06:58,0,89 1/1:0,17:17:48.13:565,48,0 1/1:0,20:20:60.14:678,60,0 0/1:8,6:14:99:164,0,227 1/1:0,17:17:48.14:583,48,0 0/1:3,9:12:59.50:287,0,59 0/1:4,10:14:90.68:322,0,91 1/1:0,21:21:60.16:715,60,0 1/1:0,24:24:57.16:670,57,0 1/1:0,19:19:57.17:679,57,0 1/1:1,21:22:41.50:697,42,0 0/1:12,10:22:99:271,0,325 1/1:0,19:19:54.13:628,54,0 0/1:5,11:16:99:301,0,108 1 156877457 . T C 241647.89 . AC=84;AF=1.000;AN=84;BaseQRankSum=2.520;DP=6803;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.6302;InbreedingCoeff=0.0000;MQ=59.43;MQ0=0;MQRankSum=0.822;QD=35.52;ReadPosRankSum=0.069 GT:AD:DP:GQ:PL 1/1:0,118:118:99:4033,322,0 1/1:0,109:109:99:3706,292,0 1/1:0,100:101:99:3482,274,0 1/1:0,250:250:99:9361,716,0 1/1:0,250:250:99:9460,713,0 1/1:0,250:250:99:9277,689,0 1/1:0,221:222:99:8282,623,0 1/1:0,237:238:99:8674,650,0 1/1:0,122:123:99:4188,331,0 1/1:0,120:120:99:4294,343,0 1/1:0,107:107:99:3735,298,0 1/1:0,109:109:99:3891,313,0 1/1:0,94:95:99:3188,253,0 1/1:1,100:101:99:3395,243,0 1/1:0,249:250:99:8654,701,0 1/1:0,120:120:99:4250,337,0 1/1:0,113:113:99:3868,307,0 1/1:0,133:133:99:4511,358,0 1/1:0,250:250:99:8553,695,0 1/1:0,248:248:99:8662,686,0 1/1:0,247:247:99:8452,680,0 1/1:0,165:165:99:5787,460,0 1/1:0,249:249:99:9809,728,0 1/1:0,227:227:99:8517,641,0 1/1:1,249:250:99:9488,710,0 1/1:0,226:227:99:8522,641,0 1/1:0,79:79:99:2849,229,0 1/1:0,113:113:99:3843,304,0 1/1:0,84:84:99:2880,229,0 1/1:0,116:116:99:4143,328,0 1/1:1,103:105:99:3642,289,0 1/1:0,249:249:99:8695,683,0 1/1:0,168:168:99:5593,439,0 1/1:0,124:124:99:4292,343,0 1/1:0,114:114:99:3883,307,0 1/1:0,131:131:99:4475,358,0 1/1:0,249:250:99:8592,701,0 1/1:0,125:125:99:4362,349,0 1/1:0,117:117:99:4255,337,0 1/1:0,126:126:99:4169,331,0 1/1:0,97:97:99:3295,262,0 1/1:0,132:132:99:4645,364,0 1 156882077 . A C 223.88 . 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G C 23468.71 . 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G A 3678.13 . 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A G 24357.38 . 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A C 20.59 . 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G A 10143.41 . 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G A 37406.33 . 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T G 13814.86 . 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A G 9336.12 . 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C T 2797.74 . 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T C 33929.72 . 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C A 381.56 . 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G A 1269 . 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C T 553.86 . 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A G 1200.63 . 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C T 8654.40 . 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C G 8001.81 . 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C T 18746.54 . 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G A 3312.35 . 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C T 3909.44 . 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T C 1502.36 . 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C T 2087.49 . 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C T 1243.29 . 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T G 20211.19 . 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A C 30270.97 . 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T C 3970.68 . 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T C 1240.52 . 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C T 350.75 . 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C T 701.37 . 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C T 620.04 . 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C G 1035.75 . 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T C 833.01 . AC=9;AF=0.107;AN=84;BaseQRankSum=-30.656;DP=6767;DS;Dels=0.00;FS=3200.000;HRun=2;HaplotypeScore=3.9625;InbreedingCoeff=-0.1217;MQ=58.92;MQ0=0;MQRankSum=-2.285;QD=0.53;ReadPosRankSum=-33.380 GT:AD:DP:GQ:PL 0/0:99,25:124:15:0,15,3235 0/0:103,35:138:95.03:0,95,3509 0/0:108,29:137:99:0,121,3667 0/1:169,81:250:99:103,0,5337 0/0:178,58:237:99:0,195,6150 0/0:161,48:209:99:0,214,5827 0/0:137,57:194:61.80:0,62,4622 0/0:170,51:221:99:0,245,5886 0/0:103,30:133:45.75:0,46,3435 0/0:106,26:132:99:0,128,3544 0/1:90,37:127:78.19:78,0,2925 0/0:95,35:130:70.94:0,71,3088 0/1:84,36:120:49.83:50,0,2644 0/0:87,28:115:16.43:0,16,2878 0/1:143,107:250:99:336,0,4501 0/1:99,29:128:28.49:28,0,3157 0/0:112,35:147:99:0,124,3845 0/0:104,27:131:99:0,155,3623 0/0:183,55:238:99:0,224,6183 0/0:176,56:232:99:0,196,5914 0/0:159,55:214:99:0,110,5410 0/0:86,42:128:31.35:0,31,2731 0/1:183,67:250:11.08:11,0,6259 0/0:160,53:213:99:0,266,5724 0/0:163,46:209:99:0,353,5848 0/0:148,44:192:99:0,251,5367 0/0:77,23:100:43.41:0,43,2581 0/1:100,32:132:24.37:24,0,3266 0/0:93,39:132:65.35:0,65,3100 0/0:98,26:124:46.40:0,46,3150 0/1:82,27:109:85.80:86,0,2741 0/0:166,59:225:99:0,281,5641 0/0:106,35:142:17.68:0,18,3409 0/0:101,22:123:52.77:0,53,3416 0/0:84,27:111:8.58:0,9,2646 0/0:100,27:127:28.75:0,29,3414 0/1:144,59:203:99:243,0,4345 0/0:89,30:119:99:0,123,2952 0/0:113,21:134:99:0,127,3933 0/0:103,29:132:74.80:0,75,3487 0/0:82,17:99:99:0,131,2875 0/0:121,35:156:99:0,142,4185 1 158644366 . A C 23455.10 . 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T C 6201.61 . AC=2;AF=0.024;AN=84;BaseQRankSum=22.224;DP=4971;DS;Dels=0.00;FS=0.799;HRun=0;HaplotypeScore=2.2035;InbreedingCoeff=-0.0244;MQ=59.47;MQ0=0;MQRankSum=-0.597;QD=13.94;ReadPosRankSum=-0.143 GT:AD:DP:GQ:PL 0/0:72,0:72:99:0,196,2312 0/0:83,0:83:99:0,211,2570 0/0:74,1:75:99:0,160,2323 0/1:118,121:239:99:3442,0,3154 0/1:116,90:206:99:2760,0,3111 0/0:213,0:213:99:0,557,6941 0/0:165,0:165:99:0,424,5249 0/0:204,0:204:99:0,521,6460 0/0:75,0:75:99:0,214,2484 0/0:72,0:73:99:0,193,2290 0/0:85,0:85:99:0,229,2722 0/0:88,0:88:99:0,247,2934 0/0:64,0:64:99:0,165,1987 0/0:63,0:63:99:0,178,2075 0/0:249,0:249:99:0,623,7557 0/0:58,0:58:99:0,165,1944 0/0:86,0:87:99:0,241,2861 0/0:86,0:86:99:0,235,2788 0/0:126,0:127:99:0,337,4014 0/0:132,0:133:99:0,352,4281 0/0:155,0:155:99:0,394,4799 0/0:87,0:87:99:0,226,2702 0/0:245,0:245:99:0,623,7685 0/0:203,0:203:99:0,542,6580 0/0:232,0:232:99:0,587,7324 0/0:173,0:173:99:0,409,5189 0/0:64,0:64:99:0,172,2051 0/0:89,0:89:99:0,241,2848 0/0:73,0:73:99:0,205,2417 0/0:86,0:87:99:0,226,2707 0/0:58,1:59:99:0,165,1958 0/0:144,0:146:99:0,349,4348 0/0:93,0:93:99:0,253,2973 0/0:87,0:87:99:0,229,2750 0/0:87,0:87:99:0,226,2705 0/0:95,0:96:99:0,250,3021 0/0:129,0:130:99:0,340,4027 0/0:74,0:74:99:0,196,2355 0/0:88,0:89:99:0,226,2736 0/0:100,0:100:99:0,277,3310 0/0:76,0:76:99:0,208,2468 0/0:81,0:81:99:0,217,2581 1 158813819 . A G 108765.34 . 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C T 1921.69 . AC=1;AF=0.012;AN=84;BaseQRankSum=-7.977;DP=8441;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.3486;InbreedingCoeff=-0.0120;MQ=59.56;MQ0=0;MQRankSum=0.544;QD=12.98;ReadPosRankSum=0.085 GT:AD:DP:GQ:PL 0/0:192,0:192:99:0,518,6373 0/0:212,0:213:99:0,560,6978 0/0:144,0:145:99:0,391,4827 0/0:250,0:250:99:0,683,8971 0/0:246,0:246:99:0,647,8665 0/0:241,0:241:99:0,611,8119 0/0:241,0:241:99:0,611,8147 0/0:233,0:233:99:0,617,8079 0/0:183,0:183:99:0,484,6054 0/0:184,0:185:99:0,472,5947 0/0:163,0:163:99:0,451,5623 0/0:184,0:184:99:0,475,5904 0/0:172,0:172:99:0,457,5692 0/0:149,0:149:99:0,400,4979 0/0:250,0:250:99:0,686,8297 0/0:175,0:175:99:0,472,5878 0/0:192,0:192:99:0,509,6317 0/0:158,0:158:99:0,430,5337 0/0:243,0:243:99:0,665,7902 0/0:232,0:233:99:0,638,7977 0/0:250,0:250:99:0,644,7762 0/0:213,0:213:99:0,554,6994 0/0:250,0:250:99:0,689,9223 0/0:229,1:230:99:0,556,7781 0/0:226,0:226:99:0,578,7652 0/0:239,0:239:99:0,629,8372 0/0:158,0:158:99:0,412,5162 0/0:155,0:155:99:0,430,5322 0/1:74,74:148:99:1968,0,2014 0/0:177,0:177:99:0,469,5824 0/0:172,0:172:99:0,469,5796 0/0:244,0:244:99:0,647,8218 0/0:195,0:195:99:0,515,6457 0/0:181,0:181:99:0,503,6201 0/0:188,0:188:99:0,487,6003 0/0:207,1:208:99:0,545,6821 0/0:239,1:240:99:0,647,7719 0/0:208,0:208:99:0,554,6852 0/0:184,0:185:99:0,511,6273 0/0:198,0:198:99:0,545,6736 0/0:158,0:158:99:0,442,5471 0/0:170,0:170:99:0,460,5687 1 158913582 . A G 1371.26 . 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T G 53.98 . AC=1;AF=0.012;AN=84;BaseQRankSum=-18.979;DP=3235;Dels=0.00;FS=94.019;HRun=1;HaplotypeScore=1.1853;InbreedingCoeff=-0.0120;MQ=59.29;MQ0=0;MQRankSum=0.401;QD=0.52;ReadPosRankSum=-5.504 GT:AD:DP:GQ:PL 0/0:54,12:67:99:0,141,1610 0/0:45,9:54:99:0,117,1313 0/0:56,8:64:99:0,100,1644 0/0:108,12:120:99:0,289,3175 0/0:79,14:93:99:0,189,2291 0/0:88,16:105:99:0,235,2683 0/0:89,7:96:99:0,238,2660 0/0:82,13:95:99:0,208,2359 0/0:55,12:68:99:0,122,1525 0/0:47,12:59:99:0,114,1281 0/0:56,8:64:99:0,144,1585 0/0:54,5:59:99:0,150,1687 0/0:52,10:62:99:0,111,1557 0/0:53,8:61:99:0,141,1590 0/0:165,46:211:99:0,315,4504 0/0:35,3:38:87.18:0,87,972 0/0:57,11:68:99:0,130,1684 0/0:69,4:74:99:0,168,1939 0/1:67,37:104:99:100,0,1654 0/0:77,4:81:99:0,189,2130 0/0:59,28:87:99:0,134,1770 0/0:58,12:71:99:0,131,1702 0/0:102,19:121:99:0,283,3083 0/0:78,11:89:99:0,207,2316 0/0:84,8:92:99:0,205,2381 0/0:82,6:88:99:0,204,2286 0/0:43,4:47:99:0,105,1247 0/0:61,6:67:99:0,108,1527 0/0:65,5:71:99:0,170,1944 0/0:53,4:57:99:0,147,1613 0/0:42,7:49:99:0,105,1186 0/0:75,7:82:99:0,205,2339 0/0:61,6:67:99:0,165,1850 0/0:51,10:61:99:0,141,1611 0/0:52,5:57:99:0,132,1499 0/0:62,13:75:99:0,165,1905 0/0:53,17:70:99:0,117,1591 0/0:54,12:66:99:0,150,1686 0/0:42,11:53:99:0,114,1252 0/0:64,9:73:99:0,162,1841 0/0:70,10:80:99:0,189,2081 0/0:62,7:69:99:0,156,1784 1 159159573 . A G 14.30 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.707;DP=533;Dels=0.00;FS=54.012;HRun=2;HaplotypeScore=0.1753;InbreedingCoeff=-0.0721;MQ=59.17;MQ0=1;MQRankSum=-0.089;QD=0.62;ReadPosRankSum=-7.393 GT:AD:DP:GQ:PL 0/0:5,0:5:12.03:0,12,142 0/0:11,2:13:27.07:0,27,325 0/0:7,5:12:18.06:0,18,234 0/0:15,7:22:27.07:0,27,320 0/0:14,2:16:33.01:0,33,351 0/0:12,6:18:30.09:0,30,381 0/0:5,0:5:9.02:0,9,112 0/0:2,4:6:3.01:0,3,38 0/0:6,2:8:18.05:0,18,218 0/0:13,2:15:36.09:0,36,411 0/0:9,0:9:24.08:0,24,299 0/0:10,0:10:18.06:0,18,229 0/0:3,2:5:6.02:0,6,72 0/0:9,2:11:15.02:0,15,162 0/0:23,9:32:26.13:0,26,675 0/0:5,2:7:12.03:0,12,134 0/0:11,4:15:2.73:1,0,274 0/0:1,1:2:3.01:0,3,39 0/0:8,3:11:21.06:0,21,256 0/0:21,4:25:51.13:0,51,598 0/0:14,5:19:37.36:0,37,464 0/0:15,0:15:36.09:0,36,435 0/0:21,4:25:47.72:0,48,564 0/0:12,2:14:27.08:0,27,342 0/0:5,2:7:12.03:0,12,142 0/0:12,1:13:30.03:0,30,318 0/0:11,3:14:27.07:0,27,322 0/1:3,2:5:21.57:22,0,60 0/0:6,0:6:15.05:0,15,184 0/0:8,2:10:0.46:10,0,206 0/0:11,2:13:27.08:0,27,333 0/0:19,2:21:39.11:0,39,482 0/0:13,1:14:36.08:0,36,406 0/0:8,3:11:21.04:0,21,246 0/0:10,2:12:27.06:0,27,323 0/0:10,2:12:30.09:0,30,350 0/1:12,6:18:50.14:50,0,335 0/0:11,3:14:0.52:9,0,276 0/0:10,3:13:24.07:0,24,290 0/0:7,2:9:15.04:0,15,180 0/0:9,2:11:27.08:0,27,330 0/0:8,2:10:23.96:0,24,258 1 159684242 . T TG 399.56 . AC=21;AF=0.250;AN=84;BaseQRankSum=-2.970;DP=1614;FS=686.900;HRun=2;HaplotypeScore=103.3473;InbreedingCoeff=-0.3492;MQ=57.47;MQ0=0;MQRankSum=1.846;QD=0.47;ReadPosRankSum=-13.630 GT:AD:DP:GQ:PL 0/1:37,0:37:26.17:26,0,509 0/0:29,0:29:31.18:0,31,583 0/1:25,0:25:14.77:15,0,341 0/1:58,0:58:36.40:36,0,939 0/0:32,0:32:19.23:0,19,515 0/0:40,0:39:55.45:0,55,819 0/0:23,0:23:4.53:0,5,412 0/1:32,0:32:9.23:9,0,562 0/1:27,14:41:12.63:13,0,721 0/0:34,0:34:7.54:0,8,449 0/0:29,0:29:42.12:0,42,514 0/1:29,0:29:5.66:6,0,492 0/0:31,0:31:66.49:0,66,769 0/1:28,0:28:42.07:42,0,557 0/1:109,0:109:28.18:28,0,1457 0/1:25,0:25:34.61:35,0,401 0/0:40,0:40:14.51:0,15,676 0/1:34,0:34:13.11:13,0,606 0/1:55,0:55:16.29:16,0,797 0/1:46,0:46:8.75:9,0,768 0/1:42,0:42:12.10:12,0,601 0/0:38,0:38:26.96:0,27,800 0/0:54,0:54:13.37:0,13,913 0/0:32,0:31:22.26:0,22,554 0/1:33,0:31:12.55:13,0,370 0/1:23,0:22:26.30:26,0,360 0/0:15,0:15:33.10:0,33,396 0/0:45,0:45:21.33:0,21,772 0/1:29,0:29:58.28:58,0,501 0/0:42,0:42:49.33:0,49,825 0/1:31,0:31:12.78:13,0,590 0/0:63,0:63:32.50:0,33,1077 0/1:50,0:50:25.46:25,0,730 0/1:38,0:38:31.75:32,0,587 0/0:38,0:38:10.53:0,11,621 0/0:37,0:37:8.52:0,9,689 0/1:34,0:34:92:92,0,416 0/1:53,0:53:53.93:54,0,782 0/0:35,0:35:6.02:0,6,737 0/0:44,0:44:3.33:0,3,766 0/0:25,0:25:36.10:0,36,435 0/0:36,0:36:4.43:0,4,635 1 159684245 . T G 913.84 . AC=26;AF=0.310;AN=84;BaseQRankSum=-14.372;DP=1475;Dels=0.00;FS=941.141;HRun=2;HaplotypeScore=1.5672;InbreedingCoeff=-0.4455;MQ=57.93;MQ0=0;MQRankSum=4.262;QD=0.97;ReadPosRankSum=-13.900 GT:AD:DP:GQ:PL 0/1:17,19:36:35.03:35,0,476 0/0:12,14:26:11.44:0,11,394 0/1:9,13:22:29.99:30,0,285 0/1:27,24:51:33.71:34,0,764 0/0:15,15:30:14.70:0,15,494 0/0:24,13:37:16.01:0,16,752 0/1:12,10:22:2.75:0,1,411 0/1:17,13:30:12.32:12,0,543 0/0:20,8:29:51.14:0,51,606 0/0:13,18:31:3.54:0,4,424 0/0:16,12:28:45.11:0,45,514 0/1:13,14:27:29.83:30,0,312 0/0:22,10:32:35.58:0,36,697 0/1:15,11:26:69.99:70,0,447 0/1:43,50:93:75.63:76,0,1271 0/1:13,10:23:26.10:26,0,326 0/1:20,15:35:24.58:25,0,592 0/1:16,16:32:66.95:67,0,473 0/1:26,23:49:13.48:13,0,777 0/1:22,22:44:86.61:87,0,618 0/1:21,14:35:48.13:48,0,614 0/0:20,17:38:5.15:0,5,572 0/0:29,21:50:34.15:0,34,918 0/0:15,15:30:43.94:0,44,505 0/0:15,16:31:32.95:0,33,458 0/1:11,12:23:15.01:15,0,299 0/0:10,3:13:30.09:0,30,352 0/0:21,20:41:38.41:0,38,669 0/1:17,12:29:67.51:68,0,468 0/0:24,16:40:13.20:0,13,748 0/1:18,11:29:34.55:35,0,502 0/0:31,28:59:9.01:0,9,978 0/1:19,27:46:66:66,0,543 0/1:18,16:34:56.72:57,0,524 0/1:18,18:36:32.53:33,0,545 0/1:19,15:34:31.64:32,0,632 0/1:17,13:30:99:100,0,466 0/1:23,21:44:35.01:35,0,594 0/1:21,13:34:69.79:70,0,664 0/1:23,20:43:20.88:21,0,657 0/0:13,8:21:39.11:0,39,455 0/1:20,12:32:4.58:5,0,597 1 159752066 . G A 9506.33 . AC=8;AF=0.095;AN=84;BaseQRankSum=6.455;DP=3074;Dels=0.00;FS=0.664;HRun=0;HaplotypeScore=2.3530;InbreedingCoeff=-0.1053;MQ=59.32;MQ0=0;MQRankSum=-0.456;QD=13.06;ReadPosRankSum=3.936 GT:AD:DP:GQ:PL 0/0:63,0:63:99:0,156,1863 0/0:63,0:63:99:0,174,2057 0/0:41,1:42:74.86:0,75,1220 0/0:110,0:110:99:0,283,3574 0/1:52,47:99:99:1335,0,1457 0/1:37,41:78:99:1164,0,1028 0/1:35,31:66:99:953,0,890 0/0:78,1:79:99:0,165,2495 0/0:65,0:65:99:0,175,2115 0/0:50,0:50:99:0,135,1644 0/0:44,0:44:99:0,114,1364 0/0:57,0:57:99:0,156,1831 0/0:62,0:62:99:0,174,2027 0/0:66,0:66:99:0,183,2120 0/1:101,118:219:99:3128,0,2479 0/1:20,25:45:99:762,0,553 0/0:62,0:62:99:0,171,2009 0/0:53,1:54:99:0,147,1752 0/0:87,0:88:99:0,241,2795 0/0:137,0:137:99:0,358,4329 0/0:86,0:86:99:0,226,2707 0/0:78,0:78:99:0,199,2388 0/0:116,0:116:99:0,310,4021 0/1:35,18:53:99:507,0,958 0/0:88,0:88:99:0,211,2630 0/1:42,19:61:99:467,0,1221 0/0:54,0:54:99:0,144,1725 0/0:58,0:58:99:0,159,1864 0/0:49,0:49:99:0,129,1577 0/0:62,0:62:99:0,162,1920 0/0:59,0:59:99:0,165,1910 0/1:64,42:107:99:1191,0,1656 0/0:70,0:70:99:0,187,2247 0/0:61,0:62:99:0,174,2003 0/0:63,0:63:99:0,162,1942 0/0:69,0:70:99:0,177,2130 0/0:94,0:94:99:0,250,2947 0/0:60,0:61:99:0,156,1873 0/0:58,0:59:99:0,159,1870 0/0:54,0:55:99:0,147,1758 0/0:55,0:55:99:0,147,1750 0/0:65,0:65:99:0,190,2204 1 159785370 . T C 1683.82 . AC=3;AF=0.036;AN=84;BaseQRankSum=-6.510;DP=3894;DS;Dels=0.00;FS=2.059;HRun=0;HaplotypeScore=1.7009;InbreedingCoeff=-0.0370;MQ=59.49;MQ0=0;MQRankSum=-0.390;QD=9.35;ReadPosRankSum=-0.217 GT:AD:DP:GQ:PL 0/0:66,1:67:99:0,196,2311 0/0:74,0:74:99:0,211,2494 0/0:64,0:64:99:0,168,2031 0/0:174,1:175:99:0,415,5546 0/0:149,0:149:99:0,415,5099 0/0:148,0:148:99:0,385,4891 0/0:100,0:100:99:0,277,3390 0/0:116,1:117:99:0,313,3852 0/0:75,0:75:99:0,208,2485 0/0:53,0:54:99:0,156,1833 0/0:62,0:62:99:0,181,2087 0/0:67,0:67:99:0,187,2243 0/0:52,0:52:99:0,147,1751 0/1:42,16:58:99:349,0,1211 0/0:233,0:234:99:0,611,7374 0/0:62,1:63:99:0,165,1993 0/0:77,0:77:99:0,214,2594 0/0:83,0:83:99:0,232,2760 0/0:118,0:118:99:0,322,3923 0/0:141,0:141:99:0,376,4582 0/0:118,0:119:99:0,316,3832 0/0:81,0:82:99:0,220,2671 0/0:184,0:184:99:0,494,6145 0/0:114,0:114:99:0,307,3832 0/0:101,0:101:99:0,289,3539 0/0:109,0:109:99:0,292,3591 0/0:54,0:54:99:0,147,1770 0/0:81,0:82:99:0,229,2717 0/1:29,22:51:99:557,0,829 0/0:73,0:73:99:0,214,2513 0/0:64,0:64:99:0,181,2208 0/0:138,0:138:99:0,364,4447 0/0:77,0:78:99:0,211,2556 0/0:73,0:73:99:0,202,2412 0/1:38,33:71:99:853,0,1056 0/0:77,0:77:99:0,223,2664 0/0:100,0:100:99:0,265,3187 0/0:70,0:70:99:0,199,2337 0/0:79,0:79:99:0,220,2651 0/0:84,0:84:99:0,238,2855 0/0:60,0:60:99:0,175,2090 0/0:52,0:52:99:0,144,1734 1 159785413 . C T 13223.01 . 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A G 15116.51 . 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T C 1738.92 . 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T C 23052.59 . 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C A 398.37 . 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T G 685.39 . 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A G 50121.16 . 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C T 9900.19 . 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G T 1119.79 . 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T TG 273.47 . 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T G 216.41 . 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C T 2191.67 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.677;DP=4469;DS;Dels=0.00;FS=1.883;HRun=0;HaplotypeScore=1.7122;InbreedingCoeff=-0.0244;MQ=59.33;MQ0=0;MQRankSum=-2.795;QD=12.18;ReadPosRankSum=0.285 GT:AD:DP:GQ:PL 0/0:98,0:98:99:0,262,3057 0/0:98,0:98:99:0,256,2982 0/0:74,0:74:99:0,205,2410 0/0:134,0:134:99:0,346,4344 0/0:136,0:136:99:0,379,4791 0/0:133,0:133:99:0,328,4247 0/0:92,0:92:99:0,220,2867 0/0:105,0:105:99:0,262,3338 0/0:91,0:91:99:0,244,2832 0/0:109,0:109:99:0,295,3401 0/0:99,0:99:99:0,262,3062 0/0:71,0:72:99:0,202,2315 0/0:73,0:74:99:0,199,2270 0/0:90,0:90:99:0,247,2839 0/0:227,0:227:99:0,593,6846 0/0:72,0:72:99:0,196,2268 0/0:93,0:93:99:0,253,2911 0/0:88,0:88:99:0,244,2797 0/0:165,0:166:99:0,433,4972 0/0:171,0:171:99:0,445,5271 0/0:194,0:194:99:0,496,5819 0/0:95,1:96:99:0,208,2831 0/0:156,0:156:99:0,424,5419 0/0:83,0:83:99:0,199,2630 0/0:84,0:84:99:0,208,2729 0/0:90,0:90:99:0,229,2942 0/0:68,0:68:99:0,190,2186 0/0:81,0:81:99:0,223,2550 0/0:98,0:98:99:0,256,2982 0/0:89,0:89:99:0,241,2774 0/0:67,0:67:99:0,193,2187 0/0:155,0:155:99:0,385,4686 0/0:100,0:100:99:0,268,3075 0/0:85,0:85:99:0,226,2604 0/0:101,0:101:99:0,286,3224 0/0:122,0:122:99:0,313,3752 0/0:118,0:118:99:0,313,3625 0/0:94,0:94:99:0,244,2873 0/0:90,0:90:99:0,244,2835 0/1:44,46:90:99:1319,0,1138 0/1:54,36:90:99:935,0,1436 0/0:96,0:96:99:0,262,3035 1 161011930 . G T 706.06 . AC=19;AF=0.226;AN=84;BaseQRankSum=-15.605;DP=2310;Dels=0.00;FS=890.650;HRun=1;HaplotypeScore=19.1216;InbreedingCoeff=-0.2982;MQ=58.31;MQ0=3;MQRankSum=-1.658;QD=0.68;ReadPosRankSum=5.262 GT:AD:DP:GQ:PL 0/0:26,9:35:29.76:0,30,619 0/0:27,3:30:48.13:0,48,555 0/1:28,7:35:51.67:52,0,669 0/0:73,37:110:22.50:0,22,1899 0/0:84,5:89:99:0,143,2132 0/0:48,11:59:43.31:0,43,1214 0/0:37,2:39:56.52:0,57,954 0/1:53,24:77:46.28:46,0,1237 0/1:27,9:36:16.97:17,0,724 0/0:36,1:37:61.55:0,62,989 0/1:25,10:35:28.23:28,0,615 0/1:35,15:50:10.02:10,0,867 0/0:31,8:40:10.95:0,11,710 0/0:24,1:25:51.15:0,51,601 0/1:98,28:126:99:141,0,2359 0/0:27,5:32:14.08:0,14,702 0/1:23,12:35:3.02:3,0,555 0/1:24,5:29:10.79:11,0,530 0/1:49,13:64:8.46:8,0,1084 0/0:81,22:103:99:0,128,1772 0/1:75,17:92:12.02:12,0,1698 0/1:55,25:80:48.53:49,0,1364 0/0:90,21:111:9.53:0,10,2032 0/1:41,17:58:61.26:61,0,1033 0/0:60,16:76:27.55:0,28,1687 0/1:47,19:66:47.92:48,0,1086 0/0:18,5:23:4.75:0,5,385 0/0:39,6:45:31.32:0,31,956 0/1:28,13:41:60.45:60,0,509 0/1:27,13:40:91.95:92,0,515 0/1:32,8:40:11.28:11,0,751 0/0:78,13:91:99:0,116,1926 0/0:45,18:63:24.23:0,24,1128 0/1:34,12:46:99:106,0,917 0/0:31,3:34:50.51:0,51,823 0/0:35,7:42:72.17:0,72,873 0/0:52,17:70:2.25:2,0,1283 0/0:38,6:45:48.69:0,49,855 0/0:41,3:44:57.99:0,58,1029 0/1:35,10:45:28.24:28,0,674 0/1:26,11:37:82.20:82,0,613 0/0:27,8:35:29.57:0,30,650 1 161011930 . G GT 3118.33 . AC=36;AF=0.429;AN=84;BaseQRankSum=-6.544;DP=2249;FS=398.512;HRun=1;HaplotypeScore=252.2279;InbreedingCoeff=-0.7429;MQ=58.64;MQ0=3;MQRankSum=1.477;QD=1.58;ReadPosRankSum=-17.897 GT:AD:DP:GQ:PL 0/0:32,0:32:2.17:0,2,327 0/0:30,0:30:30.09:0,30,385 0/1:31,0:31:37.09:37,0,391 0/1:106,0:106:99:105,0,503 0/1:77,20:96:99:273,0,454 0/1:55,0:54:4.24:4,0,478 0/1:28,10:37:82.17:122,0,82 0/1:72,0:72:99:101,0,410 0/1:35,0:35:70.81:71,0,235 0/1:34,10:44:84.70:85,0,345 0/1:35,0:35:99:114,0,303 0/1:50,0:50:86.57:87,0,298 0/0:37,0:37:6.43:0,6,359 0/1:22,8:30:84.49:84,0,247 0/1:76,0:116:99:362,0,698 0/1:31,0:31:13.05:13,0,358 0/1:36,0:36:49.71:50,0,161 0/1:26,0:26:16.17:16,0,331 0/1:59,0:59:52.53:53,0,482 0/1:99,0:99:4.19:4,0,936 0/1:88,0:88:99:159,0,693 0/1:74,0:73:92.73:93,0,608 0/1:108,0:108:93.59:94,0,753 0/1:59,0:57:99:118,0,265 0/1:79,0:75:99:117,0,400 0/1:64,0:60:99:145,0,286 0/1:21,0:21:24.29:24,0,115 0/1:45,0:45:64.42:64,0,350 0/1:40,0:40:99:104,0,243 0/1:35,0:43:81.90:82,0,321 0/1:38,0:38:99:143,0,193 0/0:86,0:86:15.79:0,16,978 0/1:65,0:65:76.17:76,0,479 0/1:44,0:44:99:102,0,413 0/1:24,10:33:99:129,0,133 0/0:39,0:39:17.25:0,17,484 0/1:62,0:62:42.56:43,0,551 0/0:47,0:47:7.17:0,7,342 0/1:33,8:41:69.28:69,0,383 0/1:41,0:41:74.99:75,0,299 0/1:36,0:36:72.61:73,0,341 0/1:34,0:34:2.86:3,0,269 1 161011931 . T G 1440.92 . AC=25;AF=0.298;AN=84;BaseQRankSum=-10.831;DP=2249;Dels=0.02;FS=1469.079;HRun=3;HaplotypeScore=20.1010;InbreedingCoeff=-0.4127;MQ=58.64;MQ0=3;MQRankSum=-0.906;QD=1.27;ReadPosRankSum=-5.406 GT:AD:DP:GQ:PL 0/1:18,14:32:77.79:78,0,530 0/1:18,12:30:72.96:73,0,526 0/1:19,12:31:86.44:86,0,511 0/0:63,43:106:58.49:0,58,1758 0/0:57,40:97:23.47:0,23,1621 0/1:30,25:55:50.25:50,0,885 0/1:20,18:38:32.66:33,0,549 0/0:46,26:72:66.31:0,66,1372 0/0:18,17:35:9.78:0,10,431 0/0:27,16:44:28.05:0,28,669 0/1:20,15:35:17.75:18,0,555 0/1:29,21:50:51.03:51,0,796 0/1:23,14:37:3.69:4,0,580 0/1:16,14:30:50.98:51,0,424 0/0:66,10:76:99:0,127,1930 0/1:16,15:31:72.85:73,0,423 0/0:23,13:36:38.60:0,39,718 0/1:19,7:26:7:7,0,498 0/1:34,23:59:99:287,0,765 0/0:60,39:99:46.42:0,46,1520 0/1:55,33:88:71.36:71,0,1493 0/0:43,30:74:9.88:0,10,1115 0/1:65,42:108:22.25:22,0,1528 0/0:35,24:59:64.86:0,65,1040 0/0:35,44:79:50.09:0,50,839 0/0:39,25:64:72.84:0,73,1181 0/0:14,7:21:42.12:0,42,475 0/1:20,25:45:99:134,0,456 0/0:25,15:40:12.35:0,12,693 0/0:30,4:35:78.21:0,78,868 0/1:17,21:38:71.89:72,0,436 0/0:52,34:86:99:0,100,1519 0/1:34,31:65:15.12:15,0,981 0/1:25,19:44:75.18:75,0,708 0/1:19,15:34:5.99:6,0,539 0/1:20,19:39:99:137,0,494 0/1:39,23:62:38.95:39,0,1106 0/1:27,20:47:52.05:52,0,596 0/1:25,16:41:91.79:92,0,732 0/0:26,15:41:19.96:0,20,774 0/1:22,14:36:48.40:48,0,513 0/1:19,15:34:42.22:42,0,530 1 161163037 . T C 22330.45 . AC=51;AF=0.607;AN=84;BaseQRankSum=1.221;DP=1253;Dels=0.00;FS=5.508;HRun=2;HaplotypeScore=1.1443;InbreedingCoeff=-0.1488;MQ=59.05;MQ0=0;MQRankSum=-0.072;QD=20.06;ReadPosRankSum=-0.183 GT:AD:DP:GQ:PL 0/1:15,7:23:99:149,0,494 0/0:20,0:20:57.17:0,57,698 0/1:11,8:19:99:243,0,333 0/1:44,31:75:99:946,0,1246 0/1:29,35:64:99:1030,0,917 0/1:21,22:43:99:626,0,607 0/1:16,18:34:99:502,0,508 1/1:0,34:34:99:1252,99,0 0/1:10,6:16:99:161,0,240 0/1:9,10:19:99:305,0,227 0/0:24,0:24:63.17:0,63,759 1/1:0,25:25:72.21:863,72,0 1/1:0,14:14:39.12:482,39,0 0/1:11,10:21:99:287,0,339 0/1:27,42:69:99:1175,0,711 0/0:25,0:26:69.17:0,69,816 0/1:15,8:23:99:223,0,394 1/1:0,13:13:33.10:406,33,0 0/1:24,11:35:99:291,0,690 0/1:26,32:58:99:909,0,717 1/1:0,35:35:96.28:1162,96,0 1/1:1,18:19:16.36:567,16,0 1/1:1,64:65:99:2286,145,0 0/1:16,15:31:99:396,0,456 0/1:16,23:39:99:691,0,441 0/0:47,1:48:95.39:0,95,1572 1/1:0,13:13:39.11:471,39,0 0/1:9,11:20:99:338,0,254 0/1:13,10:23:99:297,0,364 1/1:0,19:19:54.16:651,54,0 1/1:0,22:22:60.18:732,60,0 0/1:20,28:48:99:761,0,592 1/1:0,24:24:66.18:790,66,0 1/1:0,14:14:42.12:499,42,0 1/1:0,24:24:66.19:797,66,0 0/1:6,7:13:99:227,0,176 0/1:16,20:36:99:523,0,420 1/1:0,19:19:45.09:525,45,0 0/0:22,0:22:66.20:0,66,809 0/1:11,7:18:99:125,0,338 0/1:9,5:14:99:126,0,284 0/1:12,20:32:99:518,0,312 1 161197734 . A ACCACC 3216.93 . AC=34;AF=0.405;AN=84;BaseQRankSum=4.585;DP=1882;FS=1397.281;HRun=0;HaplotypeScore=266.3025;InbreedingCoeff=-0.6793;MQ=62.67;MQ0=0;MQRankSum=20.447;QD=2.07;ReadPosRankSum=-26.375 GT:AD:DP:GQ:PL 0/1:23,0:34:97.91:98,0,981 0/0:26,0:40:37.19:0,37,1297 0/1:27,0:39:19.65:20,0,1469 0/1:29,0:60:99:109,0,1079 0/1:23,0:44:95.21:95,0,900 0/1:28,0:46:41.68:42,0,1030 0/1:18,0:36:80.22:80,0,827 0/1:29,0:39:27.47:27,0,1118 0/1:25,0:38:72.21:72,0,1107 0/1:23,0:44:82.78:83,0,803 0/1:30,1:43:99:126,0,1267 0/1:29,0:51:99:153,0,1310 0/1:25,0:38:63.70:64,0,1133 0/1:22,0:43:99:133,0,1100 0/1:93,0:143:99:310,0,3346 0/1:24,0:38:55.60:56,0,1031 0/1:27,0:48:95.23:95,0,1225 0/0:22,0:30:10.20:0,10,1078 0/1:33,0:49:99:399,0,927 0/1:39,0:71:99:129,0,1996 0/1:24,0:40:99:237,0,618 0/1:25,0:38:48.06:48,0,1138 0/1:32,0:65:99:165,0,1377 0/0:25,0:41:6.25:0,6,933 0/1:24,0:50:1.91:2,0,1012 0/0:21,0:34:11.14:0,11,780 0/0:24,0:31:22.12:0,22,876 0/1:17,0:33:42.67:43,0,981 0/1:21,0:40:99:152,0,629 0/1:38,0:59:74.98:75,0,1434 0/1:25,0:35:50.14:50,0,883 0/0:46,0:65:39.18:0,39,2027 0/0:27,0:41:7.42:0,7,1186 0/1:22,0:34:49.64:50,0,967 0/1:24,0:39:4.94:5,0,907 0/0:23,0:44:8.20:0,8,1138 0/1:16,0:35:99:272,0,565 0/1:25,0:41:36.54:37,0,1046 0/1:24,0:34:65.72:66,0,756 0/1:17,0:31:52.79:53,0,664 0/1:20,0:36:18.41:18,0,822 0/1:20,0:37:37.50:38,0,881 1 161336289 . A G 5778.73 . AC=3;AF=0.036;AN=84;BaseQRankSum=-2.045;DP=7120;DS;Dels=0.00;FS=4.317;HRun=0;HaplotypeScore=2.5312;InbreedingCoeff=-0.0370;MQ=59.57;MQ0=0;MQRankSum=1.290;QD=13.28;ReadPosRankSum=-1.773 GT:AD:DP:GQ:PL 0/0:137,0:137:99:0,388,4647 0/0:161,0:162:99:0,430,5204 0/0:125,1:126:99:0,308,4102 0/0:250,0:250:99:0,707,8631 0/0:234,0:234:99:0,635,7953 0/0:250,0:250:99:0,692,8769 0/0:218,0:219:99:0,608,7571 0/0:227,0:228:99:0,647,7961 0/0:151,0:152:99:0,409,4965 0/0:109,0:109:99:0,310,3664 0/0:138,0:138:99:0,391,4678 0/0:122,0:122:99:0,331,4022 0/0:133,0:133:99:0,352,4305 0/0:134,0:134:99:0,370,4478 0/0:244,0:244:99:0,656,7945 0/0:110,0:110:99:0,313,3728 0/0:142,0:142:99:0,394,4789 0/1:68,59:127:99:1595,0,1945 0/0:208,0:208:99:0,560,6873 0/0:190,0:190:99:0,515,6277 0/0:197,0:197:99:0,512,6303 0/0:144,0:144:99:0,379,4639 0/0:250,0:250:99:0,704,8657 0/0:250,0:250:99:0,692,8620 0/0:248,0:250:99:0,695,8603 0/0:249,0:249:99:0,704,8705 0/0:84,0:84:99:0,235,2849 0/0:155,0:155:99:0,415,5088 0/0:145,0:145:99:0,391,4740 0/1:75,84:159:99:2321,0,2120 0/0:143,0:143:99:0,391,4751 0/0:165,1:166:99:0,424,5285 0/1:82,67:149:99:1863,0,2242 0/0:150,0:150:99:0,418,5113 0/0:138,0:138:99:0,376,4599 0/0:167,0:167:99:0,454,5523 0/0:191,0:191:99:0,509,6202 0/0:144,0:144:99:0,400,4815 0/0:154,0:154:99:0,439,5283 0/0:165,0:165:99:0,454,5560 0/0:117,0:117:99:0,313,3831 0/0:138,0:138:99:0,397,4752 1 161487863 . C T 5125.47 . AC=12;AF=0.143;AN=84;BaseQRankSum=-19.820;DP=4889;DS;Dels=0.00;FS=4.865;HRun=0;HaplotypeScore=2.2413;InbreedingCoeff=-0.1667;MQ=20.84;MQ0=1504;MQRankSum=-1.381;QD=4.02;ReadPosRankSum=0.406 GT:AD:DP:GQ:PL 0/1:64,34:98:99:224,0,422 0/0:83,0:83:99:0,114,1110 0/0:79,1:80:87.12:0,87,889 0/1:112,76:188:99:802,0,1012 0/0:174,0:174:99:0,207,2167 0/0:156,0:156:99:0,213,2175 0/0:108,0:108:99:0,138,1435 0/0:142,0:142:99:0,180,1846 0/1:68,29:97:99:343,0,590 0/1:59,32:91:99:369,0,657 0/1:64,27:91:99:273,0,540 0/0:130,0:130:99:0,162,1620 0/0:95,0:95:99:0,102,975 0/0:112,0:112:99:0,117,1187 0/0:250,0:250:99:0,315,3258 0/0:70,0:70:66.08:0,66,654 0/0:89,0:89:96.15:0,96,989 0/0:89,1:90:93.47:0,93,1142 0/0:105,0:106:99:0,156,1632 0/0:183,0:183:99:0,240,2496 0/0:127,0:128:99:0,168,1720 0/0:81,0:81:99:0,120,1251 0/1:109,73:182:99:825,0,1174 0/0:172,0:172:99:0,237,2459 0/0:150,0:150:99:0,174,1788 0/0:172,0:172:99:0,219,2285 0/0:85,0:85:99:0,111,1106 0/1:58,26:84:99:367,0,459 0/0:77,1:78:84.45:0,84,1032 0/0:107,0:107:99:0,138,1374 0/0:94,0:94:93.09:0,93,906 0/0:151,0:152:99:0,192,2015 0/0:114,0:114:99:0,150,1557 0/1:59,39:98:99:468,0,658 0/1:58,27:85:99:305,0,485 0/0:97,0:97:99:0,126,1233 0/1:55,37:92:99:399,0,403 0/1:51,32:83:99:299,0,483 0/1:50,35:85:99:450,0,513 0/0:104,0:104:99:0,99,936 0/0:103,0:103:99:0,135,1384 0/0:110,0:110:99:0,147,1574 1 161560943 . T G 6945.29 . AC=42;AF=0.500;AN=84;BaseQRankSum=-18.425;DP=1472;Dels=0.00;FS=2259.442;HRun=2;HaplotypeScore=0.5008;InbreedingCoeff=-0.9993;MQ=38.66;MQ0=214;MQRankSum=-4.374;QD=4.72;ReadPosRankSum=-23.622 GT:AD:DP:GQ:PL 0/1:12,6:18:99:111,0,186 0/1:17,11:28:99:151,0,344 0/1:17,8:25:38.87:39,0,346 0/1:20,23:43:99:173,0,314 0/1:25,27:52:99:262,0,594 0/1:28,29:57:99:233,0,532 0/1:17,22:39:99:109,0,428 0/1:22,14:36:75.71:76,0,473 0/1:24,14:38:88.10:88,0,528 0/1:20,17:37:99:210,0,344 0/1:17,15:32:99:155,0,282 0/1:25,24:49:99:383,0,403 0/1:14,11:25:74.25:74,0,243 0/1:22,25:47:99:440,0,396 0/1:31,22:53:99:161,0,385 0/1:7,16:23:99:151,0,126 0/1:15,11:26:99:157,0,140 0/1:18,21:39:99:232,0,207 0/1:20,9:29:98.79:99,0,378 0/1:26,29:55:99:252,0,398 0/1:34,28:62:99:308,0,636 0/1:18,9:27:46.29:46,0,343 0/1:18,21:39:99:258,0,395 0/1:25,21:46:99:151,0,429 0/1:10,16:26:99:138,0,142 0/1:12,23:35:99:223,0,253 0/1:11,5:16:99:105,0,119 0/1:10,8:18:93.81:94,0,123 0/1:11,12:23:99:100,0,187 0/1:20,18:38:99:153,0,280 0/1:21,23:44:99:211,0,417 0/1:38,45:83:99:352,0,482 0/1:20,17:37:99:186,0,301 0/1:15,14:29:99:103,0,343 0/1:16,18:34:99:142,0,236 0/1:18,17:35:99:169,0,328 0/1:18,16:34:99:202,0,343 0/1:15,7:22:49.49:49,0,375 0/1:9,10:19:99:190,0,162 0/1:14,10:25:99:110,0,182 0/1:11,3:14:18.63:19,0,99 0/1:10,5:15:78.22:78,0,251 1 161560945 . C G 315.99 . AC=18;AF=0.214;AN=84;BaseQRankSum=-11.513;DP=1258;Dels=0.00;FS=725.989;HRun=1;HaplotypeScore=0.5474;InbreedingCoeff=-0.2882;MQ=37.20;MQ0=259;MQRankSum=-3.188;QD=0.65;ReadPosRankSum=-13.358 GT:AD:DP:GQ:PL 0/1:12,5:17:41.06:41,0,174 0/0:20,7:27:15.48:0,15,451 0/1:20,4:24:44.74:45,0,357 0/1:17,13:30:21.76:22,0,416 0/0:27,13:40:2.54:1,0,635 0/0:29,15:44:51.17:0,51,689 0/1:17,14:31:3.17:3,0,490 0/0:24,7:31:48.14:0,48,595 0/1:26,9:35:32.39:32,0,587 0/0:27,11:38:42.11:0,42,489 0/0:18,10:28:3.45:0,3,311 0/1:28,14:42:13.74:14,0,476 0/0:16,4:20:26.53:0,27,316 0/0:24,18:42:19.13:0,19,482 0/0:33,13:47:21.12:0,21,540 0/1:9,10:20:31.31:31,0,147 0/1:18,8:26:14.19:14,0,196 0/1:22,12:35:32.88:33,0,257 0/0:20,5:25:9.60:0,10,410 0/0:28,17:45:48.15:0,48,608 0/0:36,14:51:16.08:0,16,790 0/0:18,4:22:36.10:0,36,433 0/1:19,15:34:8.11:8,0,525 0/0:26,14:40:24.06:0,24,723 0/1:14,9:23:61.25:61,0,227 0/0:16,14:30:3.47:0,3,347 0/1:11,4:15:44.20:44,0,98 0/0:12,4:16:15.05:0,15,188 0/1:11,4:15:5.55:6,0,229 0/1:20,12:33:18.37:18,0,368 0/0:23,15:38:35.60:0,36,500 0/0:39,25:64:68.02:0,68,830 0/1:23,10:33:14.61:15,0,499 0/0:16,9:25:12.49:0,12,431 0/0:21,9:30:27.07:0,27,317 0/1:19,10:29:43.18:43,0,365 0/1:18,12:30:20.85:21,0,344 0/0:17,2:19:7.45:0,7,378 0/0:12,2:14:18.04:0,18,208 0/0:16,5:21:20.27:0,20,229 0/1:11,2:13:20.28:20,0,108 0/0:13,3:16:27.08:0,27,335 1 161560987 . G A 83.29 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.767;DP=1896;Dels=0.00;FS=4.829;HRun=0;HaplotypeScore=0.4413;InbreedingCoeff=-0.0194;MQ=17.38;MQ0=1236;MQRankSum=0.966;QD=2.87;ReadPosRankSum=-0.412 GT:AD:DP:GQ:PL 0/0:26,0:26:12.01:0,12,110 0/0:45,0:45:48.03:0,48,459 0/0:31,0:31:33.02:0,33,314 0/0:44,0:44:30.08:0,30,359 0/0:44,0:44:60.11:0,60,634 0/0:61,0:61:45.07:0,45,472 0/1:20,9:29:99:129,0,161 0/0:41,0:41:48.11:0,48,546 0/0:51,0:51:54.08:0,54,538 0/0:46,0:46:45.06:0,45,438 0/0:42,0:42:39.05:0,39,386 0/0:50,0:50:51.10:0,51,531 0/0:24,0:24:27.05:0,27,276 0/0:63,0:63:57.05:0,57,546 0/0:110,0:110:66.11:0,66,693 0/0:35,0:35:39.03:0,39,368 0/0:41,0:41:12.03:0,12,130 0/0:55,0:55:42.06:0,42,423 0/0:75,0:75:63.09:0,63,642 0/0:81,0:81:72.07:0,72,721 0/0:62,0:62:51.10:0,51,542 0/0:36,0:36:24.01:0,24,226 0/0:56,0:56:63.11:0,63,663 0/0:47,0:47:72.12:0,72,779 0/0:26,0:26:12.03:0,12,143 0/0:36,0:36:42.11:0,42,484 0/0:28,0:28:9.01:0,9,86 0/0:37,0:37:21.03:0,21,206 0/0:22,0:22:15.05:0,15,182 0/0:42,0:42:27.05:0,27,288 0/0:45,0:45:21.05:0,21,224 0/0:74,0:74:69.17:0,69,776 0/0:49,0:49:48.07:0,48,497 0/0:44,0:44:45.07:0,45,458 0/0:48,0:48:51.10:0,51,533 0/0:43,0:43:42.09:0,42,455 0/0:51,0:51:30.05:0,30,311 0/0:38,0:38:24.03:0,24,246 0/0:37,0:37:36.03:0,36,334 0/0:32,0:33:18.01:0,18,179 0/0:26,0:26:6.01:0,6,61 0/0:22,0:22:15.02:0,15,145 1 161561013 . C A 16.93 . AC=2;AF=0.024;AN=82;BaseQRankSum=-8.305;DP=3011;Dels=0.00;FS=42.437;HRun=2;HaplotypeScore=0.4904;InbreedingCoeff=-0.0620;MQ=14.36;MQ0=2046;MQRankSum=0.757;QD=0.10;ReadPosRankSum=-4.379 GT:AD:DP:GQ:PL 0/0:34,5:39:2.26:2,0,171 0/0:66,4:70:57.02:0,57,522 0/0:42,1:43:26.99:0,27,240 0/0:84,4:88:60.08:0,60,605 0/0:70,6:76:39.03:0,39,368 0/0:104,5:109:36.01:0,36,329 0/0:45,2:47:39.02:0,39,370 0/0:61,3:64:24.02:0,24,227 0/0:68,6:74:39.04:0,39,366 0/0:49,9:58:12.33:0,12,285 0/0:53,6:59:42.02:0,42,386 0/0:65,7:72:16.35:0,16,359 0/0:41,4:45:24.02:0,24,234 0/0:98,7:105:81.04:0,81,748 0/0:158,20:178:30.35:0,30,464 0/0:52,13:65:48.06:0,48,456 ./. 0/0:68,5:73:42.01:0,42,383 0/0:103,11:114:48.46:0,48,696 0/0:126,10:136:81.07:0,81,758 0/0:93,15:108:0.40:10,0,340 0/0:48,2:50:24.01:0,24,220 0/0:94,4:98:78.01:0,78,702 0/0:72,5:77:39:0,39,352 0/0:43,5:48:24.05:0,24,257 0/0:54,3:57:27.04:0,27,262 0/0:36,4:40:0.55:9,0,101 0/0:61,3:64:12.01:0,12,112 0/0:37,3:40:9.02:0,9,92 0/0:51,2:53:27:0,27,247 0/1:68,13:82:57.80:58,0,156 0/0:101,8:110:54.08:0,54,541 0/0:63,2:65:51.06:0,51,497 0/0:61,4:65:14.38:0,14,335 0/0:59,8:67:33.06:0,33,344 0/0:62,5:67:30.05:0,30,305 0/1:79,8:87:14.31:14,0,274 0/0:42,8:51:11.97:0,12,102 0/0:56,4:60:54.05:0,54,504 0/0:54,3:57:15.02:0,15,149 0/0:53,2:55:15.01:0,15,137 0/0:39,0:39:21.01:0,21,192 1 161561151 . G A 1080.21 . AC=7;AF=0.085;AN=82;BaseQRankSum=6.798;DP=2188;DS;Dels=0.00;FS=4.587;HRun=0;HaplotypeScore=0.7006;InbreedingCoeff=0.1517;MQ=18.93;MQ0=1334;MQRankSum=-1.669;QD=3.65;ReadPosRankSum=-1.507 GT:AD:DP:GQ:PL 0/0:23,0:23:24.06:0,24,257 0/0:50,0:50:57.02:0,57,521 0/0:49,0:49:81.06:0,81,771 0/0:71,0:71:90.07:0,90,868 0/0:62,0:62:63.09:0,63,630 0/0:75,0:75:72.08:0,72,706 0/1:27,15:42:99:202,0,185 0/0:50,0:50:45.06:0,45,451 0/0:63,0:63:78.11:0,78,765 0/0:41,0:41:51.08:0,51,515 0/1:35,16:52:99:175,0,170 0/1:51,14:65:99:173,0,380 0/0:47,0:48:39.02:0,39,362 0/1:44,18:63:99:210,0,277 0/0:100,0:100:72.09:0,72,716 0/0:44,0:44:48.06:0,48,469 ./. 0/0:33,0:33:27.04:0,27,265 0/0:87,0:87:69.11:0,69,682 0/0:121,0:121:99:0,165,1630 0/0:52,12:65:11.63:0,12,379 0/0:47,0:47:24.04:0,24,235 0/0:64,0:65:87.17:0,87,902 0/0:54,0:54:93.07:0,93,906 0/1:36,12:48:99:226,0,235 0/0:47,0:47:60.10:0,60,609 0/0:22,0:22:3.01:0,3,30 0/0:39,0:39:21.02:0,21,200 0/0:38,0:38:3.01:0,3,33 0/0:43,0:43:36.05:0,36,350 0/0:43,10:53:2.82:0,0,251 0/0:43,26:69:25.35:0,25,403 0/0:65,0:65:81.09:0,81,766 0/0:43,0:43:42.03:0,42,393 0/0:49,0:49:42.05:0,42,412 0/0:56,0:56:45.07:0,45,455 0/0:43,0:43:36.04:0,36,336 0/0:26,0:26:12:0,12,106 0/0:41,0:41:30.02:0,30,287 0/0:45,0:45:30.05:0,30,302 0/0:38,0:38:18.02:0,18,165 1/1:14,12:26:21.03:211,21,0 1 161561163 . C A 31.14 . AC=7;AF=0.088;AN=80;BaseQRankSum=-14.595;DP=2961;DS;Dels=0.00;FS=288.621;HRun=2;HaplotypeScore=1.3298;InbreedingCoeff=-0.1417;MQ=22.37;MQ0=1172;MQRankSum=-3.105;QD=0.07;ReadPosRankSum=-13.440 GT:AD:DP:GQ:PL 0/0:31,7:38:20.42:0,20,457 0/0:63,23:87:57.36:0,57,744 0/0:51,9:60:52.28:0,52,764 0/0:78,21:99:99:0,105,1119 0/0:76,16:92:78.11:0,78,814 0/0:78,12:90:72.08:0,72,750 0/0:46,6:52:57.04:0,57,552 0/0:58,9:68:36.37:0,36,586 0/0:68,15:83:26.99:0,27,899 0/0:44,9:53:63.09:0,63,644 0/0:58,25:83:0.99:0,1,569 0/0:83,19:102:21.14:0,21,918 0/0:61,10:71:75.06:0,75,738 0/0:76,27:103:1.28:5,0,776 0/1:103,38:141:9.40:9,0,884 0/1:54,14:68:10.94:11,0,537 ./. 0/0:39,13:53:2.39:0,2,254 0/0:76,26:102:31.84:0,32,857 0/0:149,17:166:99:0,211,2181 0/0:55,21:76:1.37:4,0,360 0/0:53,7:60:47.43:0,47,455 0/0:82,19:101:80.50:0,81,1136 0/0:71,23:94:71.78:0,72,1164 0/0:58,8:66:69.14:0,69,794 0/0:57,11:69:78.12:0,78,876 ./. 0/1:30,6:36:22.33:22,0,208 0/0:40,7:47:3.01:0,3,30 0/0:42,12:54:20.38:0,20,418 0/0:54,12:66:33.04:0,33,330 0/0:80,9:89:41.38:0,41,609 0/0:81,12:93:87.73:0,88,1242 0/0:41,15:56:1.66:3,0,392 0/0:56,9:65:53.43:0,53,535 0/0:56,8:64:48.08:0,48,502 0/1:41,13:54:7.31:7,0,339 0/1:27,9:36:12.69:13,0,67 0/1:39,19:58:40.96:41,0,269 0/1:35,5:41:24.28:24,0,226 0/0:38,8:46:24.02:0,24,222 0/0:26,9:35:27.04:0,27,272 1 161569419 . C G 989.64 . AC=30;AF=0.395;AN=76;BaseQRankSum=10.935;DP=1425;Dels=0.00;FS=32.271;HRun=0;HaplotypeScore=0.3644;InbreedingCoeff=0.7271;MQ=30.28;MQ0=431;MQRankSum=-22.711;QD=2.11;ReadPosRankSum=-5.585 GT:AD:DP:GQ:PL 0/1:0,7:7:1.76:30,3,0 0/1:0,12:12:1.76:33,3,0 0/0:27,7:34:50.75:0,51,854 0/0:41,12:53:80.86:0,81,1328 1/1:0,34:34:18.04:194,18,0 0/1:0,22:22:1.76:33,3,0 ./. 0/0:29,29:58:50.79:0,51,956 0/0:23,10:33:26.73:0,27,646 0/0:22,6:28:26.73:0,27,642 1/1:0,21:21:3.01:33,3,0 ./. 0/0:1,8:9:3.01:0,3,38 0/0:16,14:30:45.11:0,45,512 1/1:0,72:72:9.02:94,9,0 0/0:34,7:41:32.37:0,32,993 0/0:26,14:40:44.74:0,45,803 0/0:26,15:41:21.07:0,21,796 0/0:57,21:78:77.83:0,78,1740 0/0:59,17:76:51.21:0,51,1747 1/1:0,38:38:6.01:60,6,0 0/0:1,14:15:3.01:0,3,38 0/0:52,17:70:89.52:0,90,1716 0/0:55,10:65:45.19:0,45,1766 1/1:0,24:24:9.02:94,9,0 0/0:48,0:48:99:0,132,1629 0/1:0,12:12:1.76:30,3,0 1/1:0,25:25:12.03:129,12,0 0/1:0,15:15:1.76:27,3,0 ./. 1/1:0,35:35:6.02:67,6,0 0/0:42,21:64:53.43:0,53,1260 1/1:0,27:27:9.02:94,9,0 0/1:0,20:20:1.76:33,3,0 ./. 1/1:0,23:23:3.01:37,3,0 0/0:40,0:40:99:0,114,1283 0/1:0,11:11:1.76:27,3,0 0/0:63,0:63:99:0,186,2124 1/1:0,35:35:9.02:94,9,0 1/1:0,23:23:6.02:67,6,0 0/1:0,14:14:1.76:27,3,0 1 161569499 . G A 846.50 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.019;DP=4256;DS;Dels=0.00;FS=7.177;HRun=0;HaplotypeScore=2.8639;InbreedingCoeff=-0.0244;MQ=25.23;MQ0=1149;MQRankSum=-0.083;QD=6.00;ReadPosRankSum=3.013 GT:AD:DP:GQ:PL 0/0:38,0:38:42.06:0,42,425 0/0:63,0:63:99:0,105,1123 0/0:88,0:88:99:0,123,1291 0/0:134,0:135:99:0,231,2551 0/0:136,0:136:99:0,228,2369 0/0:192,0:193:99:0,309,3310 0/0:136,0:136:99:0,207,2282 0/0:161,0:161:99:0,271,3042 0/0:100,0:100:99:0,153,1610 0/0:68,1:69:99:0,102,1045 0/0:77,0:77:99:0,138,1417 0/0:75,0:75:99:0,108,1104 0/0:72,0:74:99:0,99,996 0/0:100,0:100:99:0,141,1437 0/0:238,0:238:99:0,415,4248 0/0:61,0:61:99:0,117,1271 0/0:89,0:89:99:0,138,1443 0/0:96,0:96:99:0,174,1844 0/0:143,0:143:99:0,204,2188 0/0:132,0:132:99:0,219,2363 0/0:117,0:117:99:0,162,1600 0/0:54,0:54:75.17:0,75,842 0/0:177,0:177:99:0,316,3361 0/0:151,0:151:99:0,231,2541 0/0:103,0:103:99:0,183,1917 0/0:132,0:132:99:0,195,2163 0/1:27,37:64:99:616,0,298 0/0:85,0:85:99:0,102,1008 0/1:55,22:77:99:293,0,625 0/0:55,0:55:78.12:0,78,797 0/0:116,0:116:99:0,171,1763 0/0:150,0:150:99:0,210,2277 0/0:84,0:84:99:0,117,1230 0/0:85,0:85:99:0,132,1395 0/0:75,0:75:99:0,102,1060 0/0:74,0:74:99:0,111,1142 0/0:67,0:67:93.18:0,93,993 0/0:41,0:41:45.05:0,45,450 0/0:104,0:104:99:0,159,1746 0/0:100,0:100:99:0,141,1505 0/0:62,0:62:84.10:0,84,822 0/0:79,0:79:99:0,102,1085 1 161569569 . C T 6747.91 . AC=13;AF=0.155;AN=84;BaseQRankSum=-5.941;DP=5890;DS;Dels=0.00;FS=4.204;HRun=0;HaplotypeScore=1.3997;InbreedingCoeff=0.1809;MQ=24.03;MQ0=1725;MQRankSum=-2.492;QD=5.34;ReadPosRankSum=-2.191 GT:AD:DP:GQ:PL 1/1:12,55:67:99:1170,114,0 0/1:55,39:94:99:516,0,391 0/0:118,0:118:99:0,171,1701 0/0:234,0:235:99:0,391,4324 0/0:185,1:187:99:0,271,3165 0/0:249,0:250:99:0,388,4189 0/0:207,1:208:99:0,334,3698 0/0:250,0:250:99:0,421,4666 0/0:124,0:124:99:0,153,1583 0/0:98,0:98:99:0,126,1312 0/0:102,0:102:99:0,114,1220 0/1:68,35:103:99:387,0,568 0/1:71,32:103:99:352,0,656 0/0:124,0:124:99:0,162,1669 0/1:168,82:250:99:982,0,1700 0/1:52,30:82:99:462,0,453 0/0:109,0:109:99:0,174,1753 0/0:117,1:118:99:0,151,1759 0/0:175,0:175:99:0,282,2970 0/0:193,0:193:99:0,322,3374 0/1:101,52:153:99:721,0,1297 1/1:22,39:61:63.07:615,63,0 0/0:244,0:244:99:0,385,4121 0/0:235,0:235:99:0,361,3900 0/0:168,0:168:99:0,249,2596 0/0:207,0:207:99:0,298,3302 0/0:91,0:91:99:0,147,1553 0/0:127,0:127:99:0,141,1467 0/0:98,0:98:99:0,123,1303 0/0:107,0:107:99:0,141,1424 0/0:140,0:140:99:0,219,2168 0/0:181,0:181:99:0,225,2320 0/1:70,44:114:99:585,0,847 0/0:119,0:119:99:0,162,1624 0/0:107,0:107:99:0,141,1467 0/0:114,0:114:99:0,156,1621 0/0:115,0:115:99:0,159,1607 0/0:70,0:70:69.12:0,69,721 0/0:112,0:112:99:0,186,1930 0/1:109,41:150:99:485,0,1276 0/1:56,31:87:99:471,0,419 0/0:100,0:100:99:0,129,1277 1 161641384 . G A 4281.37 . AC=16;AF=0.190;AN=84;BaseQRankSum=6.843;DP=2929;DS;Dels=0.00;FS=3.059;HRun=0;HaplotypeScore=1.4316;InbreedingCoeff=-0.0810;MQ=19.39;MQ0=1066;MQRankSum=0.477;QD=3.80;ReadPosRankSum=1.464 GT:AD:DP:GQ:PL 0/0:54,0:55:48.08:0,48,487 0/0:38,0:38:33.04:0,33,328 0/1:24,17:41:99:245,0,114 0/1:55,29:84:99:277,0,661 0/0:80,0:80:96.16:0,96,1015 0/0:66,0:66:72.16:0,72,775 0/0:62,0:63:69.13:0,69,735 0/1:51,26:77:99:293,0,561 0/1:33,15:48:99:109,0,253 0/1:32,20:52:99:225,0,270 0/0:57,0:57:54.04:0,54,533 0/0:53,0:53:72.11:0,72,728 0/0:46,0:46:27.04:0,27,269 0/1:31,16:47:99:153,0,230 0/0:178,0:179:99:0,162,1576 0/1:37,20:57:99:234,0,507 0/1:62,23:85:99:168,0,664 0/1:24,16:40:99:99,0,370 0/1:83,34:117:99:409,0,985 0/1:94,34:128:99:244,0,962 0/0:83,0:83:66.11:0,66,692 0/0:64,0:64:60.10:0,60,616 0/1:56,30:86:99:269,0,594 0/0:89,0:89:99:0,126,1314 0/0:66,0:66:72.06:0,72,705 0/0:81,1:82:74.76:0,75,1072 0/0:58,0:58:60.07:0,60,598 0/0:72,0:72:87.16:0,87,911 0/0:40,0:40:39.04:0,39,381 0/0:63,0:63:63.09:0,63,646 0/0:61,0:61:63.07:0,63,621 0/1:85,50:135:99:726,0,382 0/0:65,0:65:66.11:0,66,687 0/0:39,0:39:39.05:0,39,400 0/0:58,0:59:54.07:0,54,537 0/0:51,0:51:39.07:0,39,408 0/1:50,36:86:99:342,0,423 0/0:51,0:51:33.07:0,33,345 1/1:8,36:44:48.08:488,48,0 0/0:99,0:99:99:0,120,1234 0/0:49,0:49:60.11:0,60,624 0/0:73,0:73:84.11:0,84,842 1 161642771 . T TG 1745.37 . AC=32;AF=0.381;AN=84;BaseQRankSum=8.863;DP=1781;FS=926.149;HRun=2;HaplotypeScore=110.4578;InbreedingCoeff=-0.6058;MQ=40.98;MQ0=202;MQRankSum=-4.437;QD=1.25;ReadPosRankSum=-13.135 GT:AD:DP:GQ:PL 0/1:35,0:28:35.03:35,0,385 0/1:41,0:35:81.30:81,0,561 0/1:23,0:19:35.37:35,0,232 0/1:47,0:45:63.05:63,0,578 0/1:32,0:27:14.82:15,0,339 0/0:33,0:20:9.13:0,9,396 0/0:16,0:10:17.71:0,18,159 0/1:36,0:26:51.71:52,0,343 0/1:32,0:30:24.81:25,0,496 0/1:35,0:29:3.43:3,0,449 0/0:29,0:22:16.45:0,16,416 0/1:27,0:22:26.77:27,0,279 0/1:33,0:28:11.61:12,0,483 0/1:27,0:22:99:115,0,169 0/1:170,0:143:99:165,0,2602 0/1:30,0:24:45.09:45,0,328 0/1:42,0:35:31.79:32,0,488 0/1:44,0:39:99:112,0,652 0/1:89,0:79:93.82:94,0,1313 0/0:80,1:70:34.75:0,35,1254 0/1:49,0:42:46.36:46,0,693 0/1:26,0:23:13.49:13,0,279 0/1:48,0:43:6.15:6,0,851 0/1:26,0:21:26.08:26,0,390 0/0:35,0:30:45.49:0,45,540 0/0:16,0:14:25.93:0,26,277 0/1:43,1:34:14.62:15,0,452 0/1:51,0:43:99:114,0,601 0/1:17,8:22:13.32:13,0,253 0/1:36,0:30:75.98:76,0,444 0/1:29,0:21:49.84:50,0,221 0/0:70,0:63:33.64:0,34,1202 0/1:37,0:31:48.03:48,0,419 0/0:33,0:27:30.28:0,30,421 0/1:34,1:31:38.59:39,0,487 0/1:37,0:31:99:168,0,420 0/1:63,0:57:99:158,0,1022 0/1:55,0:52:99:150,0,822 0/1:40,0:32:39.79:40,0,419 0/1:53,0:48:57.07:57,0,674 0/0:35,0:32:4.26:0,4,436 0/0:36,0:29:40.71:0,41,615 1 161642774 . T G 7593.79 . AC=41;AF=0.488;AN=84;BaseQRankSum=-19.196;DP=1737;Dels=0.00;FS=2817.167;HRun=2;HaplotypeScore=3.6068;InbreedingCoeff=-0.9598;MQ=40.35;MQ0=235;MQRankSum=-6.507;QD=4.46;ReadPosRankSum=-26.103 GT:AD:DP:GQ:PL 0/1:19,15:34:99:212,0,308 0/1:22,18:40:99:239,0,440 0/1:13,11:24:99:248,0,209 0/1:21,24:45:99:334,0,399 0/1:14,19:33:99:173,0,176 0/0:25,8:33:7.94:0,8,368 0/1:10,6:16:47.02:47,0,129 0/1:18,18:36:99:196,0,150 0/1:17,14:31:99:230,0,387 0/1:16,17:33:74.36:74,0,290 0/1:18,10:28:54.96:55,0,325 0/1:12,13:25:74.96:75,0,238 0/1:19,16:35:99:130,0,377 0/1:11,17:28:68.03:296,0,68 0/1:104,58:162:99:462,0,2097 0/1:16,13:29:99:239,0,246 0/1:20,18:38:99:246,0,362 0/1:26,17:43:84.93:85,0,578 0/1:48,38:86:99:216,0,873 0/1:43,35:79:99:164,0,921 0/1:28,22:50:99:175,0,523 0/1:11,12:23:99:167,0,116 0/1:28,19:47:99:155,0,630 0/1:14,10:24:67.34:67,0,229 0/1:18,15:33:99:109,0,392 0/1:10,7:17:35.04:35,0,240 0/1:23,21:44:99:359,0,349 0/1:25,25:50:99:226,0,396 0/1:11,9:20:99:131,0,194 0/1:19,16:35:99:228,0,328 0/1:13,14:27:99:131,0,166 0/1:40,28:68:99:185,0,867 0/1:16,18:35:99:138,0,193 0/1:17,16:33:53.33:53,0,248 0/1:17,16:33:99:102,0,341 0/1:18,20:38:99:348,0,320 0/1:37,23:60:99:203,0,751 0/1:28,26:54:99:319,0,553 0/1:23,18:41:99:242,0,301 0/1:30,25:55:99:223,0,667 0/1:16,19:35:99:196,0,395 0/1:23,14:37:80.50:81,0,473 1 161642775 . GCTCCAGACCCCTCACCT G 745.15 . AC=20;AF=0.238;AN=84;BaseQRankSum=16.279;DP=1516;FS=1036.138;HRun=0;HaplotypeScore=354.2840;InbreedingCoeff=-0.3373;MQ=39.36;MQ0=278;MQRankSum=-4.858;QD=0.94;ReadPosRankSum=-15.525 GT:AD:DP:GQ:PL 0/1:31,0:23:42.74:43,0,2619 0/1:33,0:26:3.31:3,0,4285 0/1:22,0:16:35:35,0,1760 0/1:35,0:30:26.45:26,0,3878 0/0:27,0:20:2.14:2,0,2258 0/0:31,0:14:35.86:0,36,3095 0/0:12,0:6:11.97:0,12,1006 0/1:30,0:19:39.02:39,0,2108 0/0:29,0:26:9.16:0,9,3671 0/1:30,0:23:33.97:34,0,2811 0/0:26,0:16:32.42:0,32,2814 0/1:23,0:17:41.11:41,0,2067 0/0:33,0:27:27.75:0,28,4061 0/1:25,0:15:86.37:86,0,1000 0/1:145,0:117:68.06:68,0,18883 0/1:28,0:22:41.44:41,0,2764 0/0:33,0:25:11.98:0,12,3110 0/1:35,0:28:30.34:30,0,4778 0/1:74,0:59:84.72:85,0,9427 0/0:67,0:51:74.01:0,74,8218 0/1:30,14:32:90.30:90,0,3688 0/0:20,0:17:7.45:0,7,2028 0/0:38,0:34:42.03:0,42,5663 0/0:21,0:15:29.94:0,30,2543 0/0:29,0:22:39.68:0,40,3557 0/0:16,0:11:20.71:0,21,1773 0/0:39,0:26:14.12:0,14,3199 0/0:41,0:31:4.25:0,4,3758 0/1:20,0:15:33.82:34,0,1549 0/1:31,0:25:4.77:5,0,3515 0/1:22,0:14:29.65:30,0,1780 0/0:62,0:50:71.15:0,71,8277 0/0:30,0:23:4.46:0,4,2661 0/0:27,0:18:7.55:0,8,2928 0/0:26,0:22:14.32:0,14,3559 0/0:28,0:21:41.50:0,41,3364 0/1:56,0:48:99:136,0,7691 0/1:41,0:37:20.07:20,0,5313 0/1:36,0:21:18.46:18,0,2775 0/0:51,0:42:27.01:0,27,6361 0/1:34,0:30:50.74:51,0,3976 0/0:35,0:25:16.69:0,17,3298 1 161642776 . C G 385.88 . AC=14;AF=0.167;AN=84;BaseQRankSum=-12.121;DP=1516;Dels=0.01;FS=944.892;HRun=1;HaplotypeScore=4.2272;InbreedingCoeff=-0.2213;MQ=39.36;MQ0=278;MQRankSum=-2.836;QD=0.89;ReadPosRankSum=-14.227 GT:AD:DP:GQ:PL 0/1:21,10:31:57.34:57,0,304 0/0:24,9:33:18.53:0,19,553 0/1:13,9:22:35.04:35,0,241 0/1:21,14:35:5.36:5,0,527 0/1:16,11:27:8.18:8,0,276 0/0:27,4:31:36.12:0,36,491 0/0:9,3:12:12.04:0,12,166 0/1:20,10:30:35.10:35,0,317 0/0:20,9:29:18.52:0,19,522 0/0:18,12:30:10.41:0,10,368 0/0:22,4:26:33.10:0,33,417 0/1:15,8:23:54.54:55,0,287 0/0:21,12:33:24.52:0,25,582 0/1:15,10:25:97.27:97,0,121 0/0:108,36:145:55.89:0,56,2502 0/1:17,11:28:28.17:28,0,314 0/0:21,12:33:12.50:0,12,443 0/1:28,7:35:26.06:26,0,639 0/0:52,21:74:22.67:0,23,1097 0/0:51,16:67:71.86:0,72,1206 0/0:29,0:30:54.15:0,54,655 0/0:14,6:20:1.92:3,0,250 0/0:27,11:38:38.79:0,39,886 0/0:16,5:21:30.06:0,30,339 0/0:22,7:29:42.13:0,42,566 0/0:13,3:16:21.07:0,21,294 0/0:28,11:39:12.48:0,12,432 0/0:29,12:41:19.40:0,19,519 0/0:13,7:20:21.06:0,21,266 0/1:20,11:31:19.65:20,0,459 0/1:16,6:22:38.88:39,0,208 0/0:49,12:62:99:0,99,1212 0/0:21,9:30:6.46:0,6,367 0/0:23,4:27:9.48:0,9,398 0/0:19,7:26:42.10:0,42,492 0/0:22,6:28:42.12:0,42,508 0/1:41,15:56:64.24:64,0,966 0/0:26,14:41:2.66:0,3,704 0/1:29,7:36:21.13:21,0,334 0/0:39,12:51:44.35:0,44,887 0/1:23,11:34:40.50:40,0,416 0/0:27,8:35:21.50:0,22,542 1 161642985 . G A 1578.23 . AC=7;AF=0.083;AN=84;BaseQRankSum=-9.287;DP=2378;DS;Dels=0.00;FS=8.380;HRun=0;HaplotypeScore=1.6192;InbreedingCoeff=-0.0912;MQ=23.40;MQ0=1176;MQRankSum=3.098;QD=4.31;ReadPosRankSum=-0.263 GT:AD:DP:GQ:PL 0/0:41,0:42:51.03:0,51,498 0/0:40,0:40:21.01:0,21,195 0/0:34,0:35:33.06:0,33,365 0/0:51,1:52:58.44:0,58,827 0/0:49,0:49:48.04:0,48,456 0/0:62,0:62:42.03:0,42,381 0/0:53,0:53:69.08:0,69,718 0/0:55,1:56:54.05:0,54,543 0/0:44,0:44:51.11:0,51,562 0/1:41,10:51:90.99:91,0,537 0/0:45,0:45:51.12:0,51,583 0/0:48,0:48:30.03:0,30,278 0/0:44,0:44:36.05:0,36,351 0/0:55,0:55:51.07:0,51,537 0/0:151,2:154:99:0,198,2105 0/0:45,0:45:45.07:0,45,466 0/0:101,0:101:99:0,156,1640 0/0:49,0:49:48.07:0,48,488 0/0:69,0:71:87.16:0,87,929 0/0:90,1:91:81.14:0,81,877 0/1:30,20:50:99:204,0,256 0/0:49,0:49:60.06:0,60,591 0/0:49,0:49:72.16:0,72,838 0/0:51,0:51:51.06:0,51,528 0/0:50,0:50:54.07:0,54,576 0/0:45,1:47:20.69:0,21,559 0/0:55,0:55:81.08:0,81,789 0/1:44,22:66:99:345,0,507 0/0:47,0:47:51.02:0,51,465 0/0:41,0:41:63.12:0,63,698 0/0:66,0:66:51.09:0,51,541 0/1:40,30:71:99:446,0,502 0/0:48,0:48:63.14:0,63,702 0/1:33,13:46:99:247,0,313 0/1:31,13:44:99:142,0,250 0/0:56,0:56:75.10:0,75,770 0/0:50,0:50:69.09:0,69,714 0/1:17,21:38:99:217,0,153 0/0:59,0:59:69.13:0,69,758 0/0:78,0:78:81.14:0,81,873 0/0:67,0:67:72.07:0,72,725 0/0:63,0:63:87.19:0,87,983 1 161642994 . C A 24.99 . 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A G 46992.10 . 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G C 5834.40 . 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C T 7058.81 . 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C T 2931.05 . 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C T 2660.44 . 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C G 20667.09 . 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C A 14403.58 . 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C T 14540.75 . 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C T 523.16 . 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G A 15555.55 . AC=20;AF=0.238;AN=84;BaseQRankSum=-9.598;DP=2170;DS;Dels=0.00;FS=9.109;HRun=1;HaplotypeScore=1.2202;InbreedingCoeff=0.0812;MQ=59.16;MQ0=0;MQRankSum=-0.880;QD=19.37;ReadPosRankSum=-0.276 GT:AD:DP:GQ:PL 0/1:25,20:45:99:627,0,662 0/1:18,28:46:99:875,0,544 0/1:21,19:40:99:547,0,646 0/0:77,0:77:99:0,217,2868 0/0:80,0:80:99:0,232,3049 0/0:56,0:56:99:0,156,2050 0/1:19,33:52:99:1103,0,554 0/0:59,0:59:99:0,163,2133 0/0:32,0:32:90.28:0,90,1139 0/0:41,0:41:99:0,111,1356 0/0:31,0:31:90.26:0,90,1112 0/0:34,0:34:93.28:0,93,1158 0/1:18,17:35:99:512,0,504 0/0:43,0:43:99:0,126,1588 0/0:139,0:139:99:0,388,4888 0/0:51,0:52:99:0,147,1848 0/1:20,24:44:99:739,0,601 0/1:21,18:39:99:553,0,672 0/0:68,0:68:99:0,187,2327 0/0:60,0:60:99:0,165,2051 1/1:1,71:73:99:2552,188,0 0/1:31,13:44:99:350,0,937 0/0:99,0:99:99:0,280,3724 0/0:45,0:45:99:0,132,1731 0/0:63,0:63:99:0,178,2392 0/0:50,0:50:99:0,147,1933 1/1:0,30:30:87.26:1076,87,0 0/1:21,26:47:99:824,0,645 1/1:0,38:38:99:1395,114,0 0/0:38,0:38:99:0,105,1325 0/0:35,0:35:96.30:0,96,1228 0/1:36,46:82:99:1374,0,983 0/1:22,24:46:99:645,0,711 0/0:39,0:39:99:0,114,1420 0/0:53,0:53:99:0,156,1946 0/0:56,0:56:99:0,160,2016 0/1:23,30:53:99:861,0,627 0/1:19,27:46:99:784,0,584 0/1:18,25:43:99:737,0,559 0/0:42,0:42:99:0,117,1462 0/0:32,0:33:90.26:0,90,1100 0/0:42,0:42:99:0,117,1458 1 165865478 . G A 39901.09 . 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C G 404.24 . AC=8;AF=0.095;AN=84;BaseQRankSum=-23.267;DP=3228;Dels=0.00;FS=969.773;HRun=4;HaplotypeScore=1.7476;InbreedingCoeff=-0.1233;MQ=59.07;MQ0=0;MQRankSum=0.645;QD=0.67;ReadPosRankSum=-19.732 GT:AD:DP:GQ:PL 0/1:47,17:64:25.23:25,0,1160 0/0:46,5:51:61.22:0,61,1187 0/0:39,8:47:37.66:0,38,902 0/0:99,29:128:99:0,101,2641 0/0:81,24:105:3.63:0,4,2080 0/0:89,17:106:99:0,156,2494 0/0:79,22:101:99:0,173,2342 0/0:76,15:91:75.02:0,75,1884 0/0:59,19:78:61.36:0,61,1480 0/1:40,18:58:23.73:24,0,927 0/0:39,8:47:21.17:0,21,904 0/1:51,22:73:58.83:59,0,1230 0/0:42,11:53:68.77:0,69,994 0/0:33,7:40:54.51:0,55,815 0/0:139,49:188:1.42:4,0,3021 0/0:36,11:47:42.89:0,43,851 0/1:53,18:71:73.81:74,0,1130 0/0:55,13:68:44.52:0,45,1389 0/1:72,34:106:99:220,0,1555 0/0:75,10:85:99:0,119,1848 0/0:62,13:75:79.29:0,79,1593 0/0:46,7:53:60.20:0,60,1120 0/0:96,34:130:99:0,131,2492 0/0:97,18:116:99:0,187,2567 0/0:80,16:97:99:0,179,2249 0/0:78,12:90:99:0,186,2177 0/0:36,9:45:46.83:0,47,942 0/0:59,11:70:62.59:0,63,1426 0/0:41,14:55:71.16:0,71,969 0/0:46,6:52:23.78:0,24,1030 0/0:36,11:47:16.21:0,16,848 0/0:94,8:103:99:0,168,2398 0/0:36,5:41:87.19:0,87,918 0/0:58,22:80:1.21:0,1,1389 0/0:55,15:70:53.26:0,53,1467 0/0:55,10:65:94.97:0,95,1472 0/1:61,28:89:90.67:91,0,1509 0/0:51,12:63:47.34:0,47,1241 0/1:59,18:77:20.99:21,0,1469 0/0:62,10:72:50.77:0,51,1473 0/1:45,19:64:4.69:5,0,1205 0/0:56,11:67:99:0,112,1479 1 166973528 . C A 2962.31 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.259;DP=3368;Dels=0.00;FS=0.832;HRun=0;HaplotypeScore=1.0711;InbreedingCoeff=-0.0244;MQ=59.52;MQ0=0;MQRankSum=0.914;QD=12.82;ReadPosRankSum=0.580 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,123,1550 0/0:59,0:59:99:0,156,2023 0/0:50,0:50:99:0,141,1812 0/0:155,0:155:99:0,394,5418 0/0:116,0:116:99:0,325,4455 0/1:76,51:127:99:1420,0,2392 0/1:50,54:104:99:1605,0,1535 0/0:123,0:123:99:0,331,4489 0/0:57,0:57:99:0,166,2120 0/0:54,0:54:99:0,153,1954 0/0:62,0:62:99:0,166,2136 0/0:58,0:58:99:0,169,2130 0/0:50,0:50:99:0,138,1770 0/0:72,0:72:99:0,211,2653 0/0:219,0:219:99:0,569,7333 0/0:63,0:63:99:0,181,2313 0/0:53,0:53:99:0,153,1963 0/0:71,0:71:99:0,196,2487 0/0:90,1:91:99:0,215,3146 0/0:99,0:99:99:0,277,3520 0/0:94,0:94:99:0,253,3215 0/0:53,0:53:99:0,141,1791 0/0:162,0:162:99:0,421,5789 0/0:118,0:118:99:0,304,4162 0/0:114,0:114:99:0,316,4311 0/0:113,0:113:99:0,304,4103 0/0:42,0:42:99:0,117,1485 0/0:57,0:57:99:0,160,2045 0/0:50,0:50:99:0,135,1746 0/0:60,0:60:99:0,159,2052 0/0:59,0:59:99:0,172,2200 0/0:96,0:97:99:0,247,3218 0/0:59,0:59:99:0,172,2209 0/0:54,0:54:99:0,150,1896 0/0:63,0:63:99:0,178,2289 0/0:69,0:69:99:0,187,2419 0/0:72,0:72:99:0,205,2579 0/0:53,0:53:99:0,160,2013 0/0:74,0:74:99:0,208,2667 0/0:59,0:59:99:0,166,2117 0/0:58,0:58:99:0,163,2076 0/0:63,0:63:99:0,181,2299 1 167024983 . C T 1611.63 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.421;DP=4414;DS;Dels=0.00;FS=11.902;HRun=0;HaplotypeScore=3.4219;InbreedingCoeff=-0.0244;MQ=59.41;MQ0=0;MQRankSum=-1.719;QD=14.39;ReadPosRankSum=-1.006 GT:AD:DP:GQ:PL 0/0:77,0:77:99:0,214,2476 0/0:66,0:66:99:0,174,2111 0/0:58,0:58:99:0,159,1915 0/0:200,0:200:99:0,524,6548 0/0:151,0:152:99:0,409,5108 0/0:143,0:143:99:0,355,4563 0/0:113,0:113:99:0,295,3720 0/0:115,0:115:99:0,292,3676 0/1:26,34:60:99:926,0,661 0/1:27,25:52:99:748,0,698 0/0:75,0:75:99:0,205,2451 0/0:67,0:67:99:0,178,2114 0/0:70,0:70:99:0,180,2119 0/0:77,0:77:99:0,208,2468 0/0:250,0:250:99:0,650,7733 0/0:66,0:66:99:0,192,2206 0/0:99,0:99:99:0,271,3212 0/0:72,1:73:99:0,168,2340 0/0:178,0:179:99:0,457,5381 0/0:158,0:159:99:0,409,4948 0/0:184,0:185:99:0,466,5638 0/0:98,0:98:99:0,256,3009 0/0:226,0:226:99:0,581,7441 0/0:111,0:111:99:0,271,3470 0/0:105,0:105:99:0,259,3296 0/0:96,0:96:99:0,223,2868 0/0:73,0:73:99:0,211,2461 0/0:101,0:101:99:0,262,3157 0/0:60,0:60:99:0,168,2004 0/0:67,0:67:99:0,171,2080 0/0:74,0:74:99:0,199,2364 0/0:153,0:153:99:0,388,4730 0/0:91,0:91:99:0,244,2871 0/0:91,0:91:99:0,250,2967 0/0:107,0:107:99:0,274,3305 0/0:100,0:100:99:0,259,3111 0/0:155,0:155:99:0,376,4451 0/0:91,0:91:99:0,235,2841 0/0:66,0:66:99:0,174,2032 0/0:67,0:67:99:0,178,2106 0/0:70,0:71:99:0,174,2103 0/0:75,0:75:99:0,208,2426 1 167042762 . C T 3860.07 . AC=8;AF=0.095;AN=84;BaseQRankSum=8.226;DP=1521;Dels=0.00;FS=0.375;HRun=1;HaplotypeScore=0.6242;InbreedingCoeff=-0.1053;MQ=59.32;MQ0=0;MQRankSum=-0.174;QD=14.19;ReadPosRankSum=0.260 GT:AD:DP:GQ:PL 0/1:15,14:29:99:347,0,398 0/0:36,0:36:99:0,102,1152 0/0:35,0:35:99:0,99,1103 0/0:47,0:47:99:0,129,1550 0/0:34,0:34:93.26:0,93,1104 0/0:42,0:42:99:0,117,1409 0/0:31,0:31:87.26:0,87,1060 0/1:18,22:40:99:636,0,524 0/0:42,0:42:99:0,111,1267 0/0:35,0:35:93.24:0,93,1049 0/0:32,1:33:60.13:0,60,1023 0/0:20,0:20:54.14:0,54,605 0/0:27,0:27:75.19:0,75,838 0/0:24,0:24:69.18:0,69,783 0/0:103,0:103:99:0,283,3188 0/1:13,18:31:99:565,0,326 0/0:40,0:40:99:0,108,1174 0/1:11,7:18:99:188,0,305 0/1:24,30:54:99:857,0,615 0/0:51,0:51:99:0,135,1565 0/0:35,0:35:99:0,99,1130 0/0:42,0:42:99:0,111,1250 0/1:24,19:43:99:563,0,686 0/0:18,1:19:51.15:0,51,618 0/0:34,0:34:93.28:0,93,1135 0/0:25,0:25:72.21:0,72,871 0/0:42,0:42:99:0,108,1265 0/0:28,0:28:78.20:0,78,877 0/0:38,0:38:99:0,105,1191 0/0:29,0:29:84.22:0,84,939 0/0:32,0:32:93.21:0,93,1025 0/0:50,0:50:99:0,135,1525 0/1:10,15:25:99:437,0,253 0/0:33,0:33:90.24:0,90,1010 0/0:36,0:36:99:0,99,1129 0/0:28,0:28:81.22:0,81,932 0/0:57,0:57:99:0,168,1865 0/0:32,0:32:90.24:0,90,1020 0/0:26,0:26:75.16:0,75,829 0/0:36,0:36:90.25:0,90,1056 0/0:26,0:27:72.20:0,72,821 0/1:22,10:32:99:267,0,647 1 167515447 . T TG 85.55 . 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A G 288.46 . 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A C 95.88 . 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C G 574.11 . 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G A 1030.64 . 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T C 2100.63 . 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T C 71828.08 . 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A G 36649.35 . 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G A 15158.14 . 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G A 5589.53 . 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G C 390.81 . 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A C 16289.31 . 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C T 18109.29 . 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C T 4901.33 . 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C T 4488.04 . 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T A 1067.94 . 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C G 1540.88 . 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C T 4175.48 . 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G C 5217.63 . 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G T 2136.38 . 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T C 63612.70 . 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C T 6504.22 . 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G A 5518.02 . 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G T 10428.26 . 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G C 1739.35 . 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G C 4684.96 . 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C T 11351.38 . 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G A 50012.53 . AC=25;AF=0.298;AN=84;BaseQRankSum=-30.048;DP=6036;DS;Dels=0.00;FS=7.874;HRun=4;HaplotypeScore=2.1977;InbreedingCoeff=-0.0820;MQ=59.16;MQ0=0;MQRankSum=0.642;QD=15.64;ReadPosRankSum=-2.615 GT:AD:DP:GQ:PL 0/1:68,54:122:99:1502,0,1918 0/1:62,49:111:99:1357,0,1817 0/1:51,58:109:99:1603,0,1344 0/1:121,113:234:99:3126,0,3676 0/0:241,0:241:99:0,620,8336 0/0:216,1:217:99:0,560,7575 0/0:234,1:235:99:0,520,7494 0/0:224,1:225:99:0,538,7610 0/0:109,1:110:99:0,263,3726 0/0:106,0:106:99:0,286,3612 0/1:46,50:96:99:1331,0,1338 0/1:61,45:106:99:1182,0,1823 1/1:2,113:115:99:3703,259,0 0/0:110,0:110:99:0,286,3637 0/1:142,107:250:99:2980,0,4017 0/0:78,0:78:99:0,223,2816 1/1:0,101:101:99:3269,262,0 0/0:101,0:101:99:0,274,3484 0/1:77,67:144:99:1849,0,2239 0/1:93,98:191:99:2673,0,2494 0/0:180,3:183:99:0,438,5998 0/1:52,45:97:99:1275,0,1469 1/1:0,210:212:99:6940,548,0 0/0:199,1:200:99:0,464,6684 0/1:124,101:225:99:2556,0,3689 0/1:92,76:168:99:2092,0,2617 0/1:49,40:89:99:1087,0,1433 0/0:117,0:117:99:0,316,3979 0/1:55,47:102:99:1324,0,1587 0/0:117,1:118:99:0,276,3795 0/0:117,0:118:99:0,310,3917 0/1:107,105:212:99:2739,0,2932 0/1:48,53:101:99:1477,0,1388 0/0:134,0:134:99:0,361,4624 0/0:100,1:101:99:0,224,3247 0/1:81,68:149:99:1860,0,2468 0/1:68,79:147:99:2325,0,1916 0/0:138,0:138:99:0,355,4547 0/1:57,60:117:99:1763,0,1697 0/0:95,0:95:99:0,259,3290 0/0:88,2:91:99:0,161,2860 0/0:117,2:120:99:0,274,3925 1 171176879 . G A 3717.32 . 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T G 12943.73 . 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T C 11264.07 . 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C T 15916.28 . 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G T 1441.09 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.020;DP=6544;DS;Dels=0.00;FS=6.668;HRun=0;HaplotypeScore=7.0903;InbreedingCoeff=-0.0120;MQ=59.47;MQ0=0;MQRankSum=-0.080;QD=12.21;ReadPosRankSum=3.045 GT:AD:DP:GQ:PL 0/0:123,0:123:99:0,337,4014 0/0:124,0:124:99:0,328,3973 0/0:121,0:121:99:0,313,3833 0/0:232,0:232:99:0,599,7871 0/0:246,0:246:99:0,641,8458 0/0:231,0:231:99:0,620,8112 0/0:217,0:217:99:0,542,7142 0/0:205,0:205:99:0,506,6706 0/0:122,0:123:99:0,310,3812 0/0:119,0:119:99:0,313,3870 0/0:136,0:136:99:0,373,4564 0/0:103,0:103:99:0,280,3371 0/0:104,0:104:99:0,274,3332 0/0:131,0:131:99:0,346,4205 0/0:234,1:235:99:0,599,7732 0/0:104,0:104:99:0,280,3441 0/0:118,0:119:99:0,331,4023 0/0:116,0:116:99:0,322,3883 0/0:204,0:204:99:0,560,6722 0/0:216,0:218:99:0,575,7067 0/0:193,3:196:99:0,461,6184 0/0:106,0:106:99:0,277,3411 0/0:241,0:241:99:0,638,8390 0/0:238,0:238:99:0,557,7383 0/0:222,1:223:99:0,546,7407 0/0:213,0:213:99:0,539,7098 0/0:98,0:98:99:0,274,3262 0/0:135,0:135:99:0,370,4445 0/0:110,0:110:99:0,292,3606 0/0:133,1:134:99:0,329,4362 0/0:119,0:120:99:0,301,3631 0/0:205,0:205:99:0,509,6360 0/0:113,0:114:99:0,295,3643 0/0:132,0:132:99:0,358,4308 0/0:127,1:128:99:0,337,4145 0/0:138,1:139:99:0,370,4526 0/0:187,1:189:99:0,484,5934 0/1:65,53:118:99:1487,0,1791 0/0:116,0:116:99:0,310,3793 0/0:139,0:139:99:0,385,4572 0/0:106,0:106:99:0,295,3553 0/0:133,0:133:99:0,370,4484 1 171483717 . A C 2839.99 . AC=18;AF=0.214;AN=84;BaseQRankSum=-4.565;DP=433;Dels=0.00;FS=3.136;HRun=1;HaplotypeScore=0.2833;InbreedingCoeff=0.0453;MQ=58.82;MQ0=0;MQRankSum=0.161;QD=14.42;ReadPosRankSum=0.185 GT:AD:DP:GQ:PL 0/1:9,3:12:80.92:81,0,271 0/1:8,4:12:92.84:93,0,257 0/1:1,6:7:16.74:188,0,17 0/0:8,0:8:21.06:0,21,263 0/0:7,0:7:15.05:0,15,207 0/0:4,0:4:9.03:0,9,113 0/0:2,0:2:6.02:0,6,74 0/0:5,0:5:15.04:0,15,179 0/1:6,1:7:11.43:11,0,200 1/1:0,13:13:33.10:418,33,0 0/0:8,0:8:24.07:0,24,285 0/0:11,0:11:27.09:0,27,347 0/0:13,0:13:36.11:0,36,456 0/1:5,1:6:14.47:14,0,154 0/1:22,29:52:99:671,0,574 0/1:5,1:6:13.50:13,0,168 0/0:9,0:9:24.08:0,24,302 0/0:5,0:5:15.05:0,15,186 0/1:9,9:18:99:238,0,275 0/1:5,8:13:99:213,0,123 0/0:22,0:22:57.18:0,57,719 0/0:14,0:14:39.12:0,39,486 0/0:5,0:5:12.04:0,12,161 1/1:0,5:5:12.04:153,12,0 0/0:1,0:1:3.01:0,3,37 0/0:6,0:6:15.05:0,15,199 0/1:3,7:10:82.42:211,0,82 0/1:3,4:7:84.63:111,0,85 0/1:1,5:6:25.76:110,0,26 0/0:10,0:10:27.08:0,27,326 0/0:8,0:8:24.07:0,24,292 0/0:17,0:17:48.15:0,48,586 0/0:16,0:16:39.12:0,39,491 0/0:5,0:5:12.04:0,12,157 0/0:11,0:11:27.08:0,27,345 0/0:15,0:15:36.12:0,36,474 0/0:14,0:14:36.09:0,36,430 0/0:7,0:7:18.06:0,18,232 0/0:4,0:4:12.04:0,12,148 0/1:5,4:9:99:100,0,139 0/0:9,0:9:27.08:0,27,323 0/1:1,13:14:2.07:390,2,0 1 171486912 . G A 6162.08 . AC=9;AF=0.107;AN=84;BaseQRankSum=-16.400;DP=1847;Dels=0.00;FS=2.906;HRun=0;HaplotypeScore=0.6372;InbreedingCoeff=-0.1200;MQ=59.30;MQ0=0;MQRankSum=1.871;QD=13.54;ReadPosRankSum=0.737 GT:AD:DP:GQ:PL 0/0:29,0:29:87.25:0,87,1076 0/0:32,0:33:93.29:0,93,1169 0/0:33,0:33:87.25:0,87,1092 0/1:23,28:51:99:763,0,675 0/0:33,0:33:93.31:0,93,1268 0/0:40,0:40:99:0,102,1365 0/0:42,0:42:99:0,114,1518 0/0:41,0:41:99:0,111,1471 0/0:51,0:51:99:0,120,1550 0/0:33,0:33:96.30:0,96,1208 0/0:37,0:37:93.30:0,93,1200 0/0:40,0:40:99:0,111,1426 0/0:31,0:31:90.24:0,90,1099 0/0:31,0:31:87.28:0,87,1126 0/1:61,53:115:99:1457,0,1884 0/0:27,0:27:78.21:0,78,950 0/1:21,11:32:99:291,0,700 0/0:29,0:29:81.25:0,81,1013 0/0:95,0:95:99:0,271,3299 0/0:91,0:91:99:0,250,3172 0/0:77,0:77:99:0,214,2688 0/0:53,0:53:99:0,138,1773 0/1:30,26:56:99:677,0,1030 0/0:38,0:38:99:0,105,1384 0/0:40,0:40:99:0,105,1393 0/0:38,0:38:99:0,99,1305 0/0:38,0:38:99:0,102,1297 0/1:18,18:37:99:529,0,522 0/0:41,0:41:99:0,120,1465 0/1:16,23:39:99:660,0,458 0/0:28,0:28:81.26:0,81,1032 0/0:54,0:54:99:0,153,1933 0/1:24,25:49:99:699,0,639 0/1:21,21:42:99:579,0,670 0/0:27,0:27:81.26:0,81,1021 0/1:17,17:34:99:508,0,526 0/0:50,0:50:99:0,141,1740 0/0:51,0:51:99:0,132,1670 0/0:31,0:31:87.27:0,87,1089 0/0:41,0:41:99:0,108,1358 0/0:36,0:36:99:0,102,1282 0/0:33,0:33:93.28:0,93,1164 1 171535527 . G C 10.46 . 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A C 2453.72 . 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C T 35306.76 . 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C T 163.52 . 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T C 46661.32 . 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G A 1447.48 . 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C T 10442.45 . 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T C 1227.32 . 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G C 100147.85 . 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C T 4206.70 . 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T C 119075.04 . 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G C 16.21 . 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C T 1180.84 . 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C T 9201.09 . 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G C 16361.22 . 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T G 3728.48 . 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T G 6503.74 . 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C G 5454.56 . 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G A 5953.85 . 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C T 38099.97 . 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A C 18236.43 . 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C T 3682.09 . 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G A 194.05 . 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C T 263.41 . 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G A 3972.04 . 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C T 3317.48 . 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C T 61856.06 . 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A C 4220.73 . AC=10;AF=0.119;AN=84;BaseQRankSum=11.021;DP=1669;Dels=0.00;FS=6.772;HRun=0;HaplotypeScore=0.4632;InbreedingCoeff=-0.1351;MQ=59.25;MQ0=0;MQRankSum=0.148;QD=12.99;ReadPosRankSum=-0.283 GT:AD:DP:GQ:PL 0/0:31,1:32:78.24:0,78,987 0/0:41,0:41:99:0,105,1313 0/1:9,11:20:99:294,0,246 0/0:37,0:37:99:0,108,1331 0/0:38,0:38:99:0,108,1365 0/0:49,0:49:99:0,123,1591 0/0:36,0:36:81.26:0,81,1084 0/0:38,0:38:99:0,99,1273 0/0:34,0:34:87.27:0,87,1085 0/1:17,14:31:99:383,0,505 0/0:31,0:31:87.27:0,87,1083 0/0:37,0:37:99:0,102,1273 0/0:26,0:26:63.18:0,63,781 0/0:32,0:32:81.25:0,81,1019 0/0:113,0:113:99:0,277,3461 0/0:23,0:23:63.19:0,63,752 0/1:18,14:32:99:392,0,483 0/0:37,0:37:99:0,105,1302 0/0:57,0:57:99:0,138,1766 0/1:42,26:68:99:691,0,1212 0/0:74,0:74:99:0,196,2434 0/0:45,0:45:99:0,111,1374 0/0:56,0:56:99:0,144,1826 0/0:41,0:41:99:0,108,1392 0/0:37,0:37:90.29:0,90,1179 0/0:47,0:47:99:0,114,1482 0/0:23,0:23:60.19:0,60,758 0/0:29,0:29:84.26:0,84,1028 0/1:12,13:25:99:363,0,323 0/0:31,0:31:84.26:0,84,1045 0/0:37,0:37:99:0,99,1241 0/0:67,0:67:99:0,166,2095 0/0:37,0:37:93.28:0,93,1158 0/1:19,17:36:99:552,0,546 0/1:17,13:30:99:396,0,474 0/0:31,0:31:81.24:0,81,1013 0/0:62,0:62:99:0,144,1841 0/1:20,18:38:99:528,0,566 0/0:33,0:33:99:0,99,1206 0/1:11,10:21:99:303,0,321 0/1:12,12:24:99:319,0,349 0/0:33,0:33:96.30:0,96,1188 1 179972363 . A G 49.12 . 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T G 609.26 . 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G A 475.62 . 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G C 31.54 . AC=2;AF=0.043;AN=46;BaseQRankSum=-0.205;DP=62;Dels=0.00;FS=2.660;HRun=1;HaplotypeScore=0.1643;InbreedingCoeff=0.1775;MQ=54.62;MQ0=0;MQRankSum=-0.068;QD=7.88;ReadPosRankSum=-0.660 GT:AD:DP:GQ:PL 0/0:2,1:3:3.01:0,3,30 0/0:1,0:1:3.01:0,3,32 ./. ./. 0/0:1,0:1:3:0,3,29 ./. ./. ./. 0/0:3,0:3:6.02:0,6,68 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6.01:0,6,62 ./. 0/0:3,0:3:9.02:0,9,99 ./. 0/0:5,0:6:12:0,12,118 0/0:2,0:2:3.01:0,3,33 0/0:2,0:2:6.01:0,6,62 0/0:3,0:3:3.01:0,3,38 0/0:3,0:3:6.02:0,6,69 ./. ./. 0/0:7,0:7:15.04:0,15,157 ./. ./. ./. 0/0:3,0:3:3.01:0,3,35 ./. 0/0:1,0:1:3.01:0,3,31 0/0:1,0:1:3.01:0,3,34 0/1:0,2:2:0.97:63,6,0 0/1:1,1:2:1.76:30,3,0 0/0:5,0:5:9.03:0,9,101 ./. ./. ./. 0/0:2,0:3:5.99:0,6,54 ./. ./. 0/0:2,0:2:3.01:0,3,33 ./. 0/0:2,0:3:3.01:0,3,32 0/0:1,0:1:3.01:0,3,32 1 180144485 . G A 20409.20 . 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G C 27797.78 . 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A G 4216.83 . 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C T 370.50 . 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A G 4504.89 . 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A G 30929.71 . 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C T 8340.41 . 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T C 15787.95 . 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C T 1017.40 . 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T C 75463.31 . 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T G 850.81 . 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C T 1238.57 . 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T C 154152.44 . 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C A 869.69 . 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T C 62516.60 . 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G A 2925.94 . 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G A 6139.78 . 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C T 10885.20 . 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C T 14588.33 . 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C T 3428.32 . 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C A 2678.91 . 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C T 1721.57 . 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G C 7049.51 . 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A G 4867.13 . 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C T 9415.81 . 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T C 100386.10 . 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T TG 94.30 . 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G C 6.56 . 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A C 42105.95 . 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G A 34708.16 . 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A C 70.74 . 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G A 2427.13 . 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A T 989.42 . 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C T 2667.32 . 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C T 1189.75 . 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C T 2613.08 . AC=5;AF=0.060;AN=84;BaseQRankSum=-9.752;DP=2150;Dels=0.00;FS=7.993;HRun=0;HaplotypeScore=0.8914;InbreedingCoeff=-0.0633;MQ=59.56;MQ0=0;MQRankSum=0.085;QD=11.26;ReadPosRankSum=1.639 GT:AD:DP:GQ:PL 0/0:34,0:34:96.29:0,96,1194 0/0:42,0:42:99:0,102,1302 0/0:41,0:41:99:0,111,1427 0/0:78,0:78:99:0,220,2951 0/0:71,0:71:99:0,202,2734 0/0:69,0:69:99:0,202,2688 0/0:63,0:63:99:0,184,2480 0/0:58,0:58:99:0,175,2337 0/0:50,0:50:99:0,141,1783 0/0:47,0:47:99:0,132,1680 0/0:44,0:44:99:0,129,1623 0/0:60,0:60:99:0,175,2172 0/0:37,0:37:99:0,105,1358 0/0:33,0:33:99:0,99,1263 0/0:126,0:126:99:0,358,4476 0/0:37,0:37:99:0,105,1327 0/0:53,0:53:99:0,150,1891 0/0:42,0:42:99:0,123,1563 0/0:69,0:69:99:0,193,2332 0/0:59,0:59:99:0,166,2120 0/1:30,29:60:99:833,0,850 0/1:21,8:29:99:193,0,713 0/0:85,0:85:99:0,247,3311 0/0:66,1:67:99:0,163,2597 0/1:36,25:61:99:707,0,1238 0/0:56,0:57:99:0,163,2173 0/0:34,0:34:93.29:0,93,1191 0/0:46,0:46:99:0,123,1539 0/0:47,0:47:99:0,138,1750 0/0:55,0:55:99:0,156,1973 0/0:37,0:37:93.29:0,93,1197 0/1:27,25:52:99:688,0,797 0/1:18,11:30:99:288,0,597 0/0:43,0:43:99:0,120,1495 0/0:36,0:36:96.28:0,96,1197 0/0:43,0:43:99:0,120,1523 0/0:55,0:55:99:0,156,1974 0/0:56,0:56:99:0,162,2006 0/0:34,0:34:96.28:0,96,1219 0/0:38,0:38:99:0,111,1411 0/0:29,1:30:60.66:0,61,1069 0/0:42,0:42:99:0,120,1562 1 186329924 . C T 1379.24 . 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T G 222.51 . 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A C 676.33 . 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C T 28909.37 . 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G T 1933.96 . 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G T 3498.85 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.157;DP=4500;DS;Dels=0.00;FS=5.684;HRun=1;HaplotypeScore=1.3825;InbreedingCoeff=-0.0244;MQ=59.32;MQ0=0;MQRankSum=0.194;QD=13.56;ReadPosRankSum=0.622 GT:AD:DP:GQ:PL 0/0:81,0:81:99:0,226,2839 0/0:92,0:92:99:0,262,3308 0/0:90,0:90:99:0,229,2942 0/0:175,0:175:99:0,454,6164 0/0:145,0:145:99:0,400,5469 0/1:79,66:145:99:1889,0,2566 0/1:57,56:113:99:1610,0,1748 0/0:136,0:136:99:0,361,4926 0/0:108,0:108:99:0,298,3801 0/0:66,0:66:99:0,190,2363 0/0:78,0:78:99:0,214,2713 0/0:91,0:91:99:0,259,3240 0/0:71,0:72:99:0,196,2483 0/0:91,0:91:99:0,259,3256 0/0:232,0:232:99:0,587,7535 0/0:72,0:72:99:0,202,2521 0/0:76,0:76:99:0,211,2676 0/0:72,0:72:99:0,205,2552 0/0:144,0:144:99:0,376,4797 0/0:143,0:143:99:0,382,4881 0/0:130,0:130:99:0,340,4339 0/0:80,0:80:99:0,229,2856 0/0:201,0:201:99:0,524,7177 0/0:125,0:125:99:0,337,4599 0/0:141,0:141:99:0,379,5181 0/0:119,0:119:99:0,325,4437 0/0:63,0:63:99:0,175,2196 0/0:91,0:91:99:0,253,3185 0/0:81,0:81:99:0,229,2873 0/0:88,0:88:99:0,235,2978 0/0:81,0:81:99:0,226,2825 0/0:141,0:141:99:0,346,4523 0/0:84,0:84:99:0,223,2819 0/0:116,0:116:99:0,325,4116 0/0:77,0:77:99:0,217,2685 0/0:90,0:90:99:0,241,3087 0/0:137,0:137:99:0,349,4448 0/0:87,0:87:99:0,235,2956 0/0:101,0:101:99:0,277,3500 0/0:87,0:87:99:0,250,3121 0/0:79,0:79:99:0,223,2769 0/0:79,0:79:99:0,229,2870 1 196711150 . T C 1613.41 . AC=1;AF=0.012;AN=84;BaseQRankSum=12.533;DP=3925;Dels=0.00;FS=8.674;HRun=0;HaplotypeScore=1.2301;InbreedingCoeff=-0.0120;MQ=58.96;MQ0=0;MQRankSum=0.650;QD=14.28;ReadPosRankSum=-0.092 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,190,2215 0/0:91,0:91:99:0,235,2856 0/0:78,0:78:99:0,208,2466 0/0:153,0:153:99:0,382,4669 0/0:138,2:141:99:0,328,4467 0/0:102,0:102:99:0,271,3398 0/1:57,56:113:99:1660,0,1375 0/0:129,0:129:99:0,325,4038 0/0:80,0:80:99:0,223,2588 0/0:84,0:84:99:0,223,2647 0/0:75,0:75:99:0,196,2368 0/0:77,0:77:99:0,208,2457 0/0:64,0:64:99:0,162,1946 0/0:75,0:75:99:0,205,2440 0/0:238,0:238:99:0,605,7236 0/0:62,0:62:99:0,175,2045 0/0:63,0:63:99:0,172,2042 0/0:66,0:66:99:0,159,1913 0/0:101,0:101:99:0,265,3221 0/0:110,0:111:99:0,295,3542 0/0:94,0:95:99:0,253,3061 0/0:63,0:64:99:0,177,2053 0/0:166,0:166:99:0,445,5356 0/0:116,0:116:99:0,304,3722 0/0:129,0:129:99:0,322,3939 0/0:147,0:147:99:0,346,4311 0/0:58,0:58:99:0,150,1827 0/0:84,0:84:99:0,232,2766 0/0:54,0:54:99:0,138,1635 0/0:74,0:74:99:0,199,2347 0/0:71,0:71:99:0,193,2305 0/0:94,0:94:99:0,250,3007 0/0:66,0:66:99:0,174,2092 0/0:92,0:92:99:0,259,3081 0/0:73,0:75:99:0,190,2274 0/0:77,0:78:99:0,214,2539 0/0:101,0:101:99:0,271,3235 0/0:91,0:92:99:0,229,2757 0/0:81,0:81:99:0,232,2707 0/0:79,0:79:99:0,229,2700 0/0:67,0:67:99:0,187,2190 0/0:72,0:72:99:0,205,2391 1 196799691 . G A 10963.92 . AC=11;AF=0.138;AN=80;BaseQRankSum=0.541;DP=6022;DS;Dels=0.00;FS=5.185;HRun=0;HaplotypeScore=1.2588;InbreedingCoeff=0.4730;MQ=26.58;MQ0=2407;MQRankSum=2.523;QD=9.02;ReadPosRankSum=0.388 GT:AD:DP:GQ:PL 0/0:143,0:143:99:0,217,2416 0/0:150,0:150:99:0,201,2161 0/0:133,0:133:99:0,207,2207 0/0:176,0:176:99:0,265,3052 0/0:250,0:250:99:0,499,5689 0/1:162,87:250:99:1549,0,2618 0/0:196,0:196:99:0,379,4321 1/1:40,97:137:99:2186,192,0 0/1:98,46:144:99:968,0,1166 0/1:65,52:117:99:932,0,749 0/0:80,0:80:99:0,123,1271 0/0:81,0:81:99:0,108,1168 0/0:86,0:86:99:0,117,1249 1/1:32,58:90:99:1131,102,0 0/0:245,0:245:99:0,289,3161 0/0:105,0:105:99:0,153,1643 0/0:94,0:94:99:0,117,1285 0/0:93,0:93:99:0,111,1177 0/1:127,62:190:99:1442,0,1583 0/1:123,75:198:99:1480,0,1174 0/0:136,0:136:99:0,216,2333 0/0:68,0:68:99:0,108,1180 0/0:188,0:188:99:0,316,3568 0/0:246,0:246:99:0,463,5205 0/0:247,1:248:99:0,425,5203 0/0:226,0:226:99:0,379,4421 0/0:133,0:133:99:0,189,2056 0/0:164,1:165:99:0,256,3000 0/0:146,0:146:99:0,256,2728 0/0:115,0:115:99:0,141,1540 0/0:117,1:118:99:0,147,1870 0/0:204,0:204:99:0,310,3339 1/1:28,62:90:99:1276,117,0 0/0:153,0:153:99:0,256,2806 0/0:89,0:89:99:0,105,1110 0/0:161,0:161:99:0,234,2473 ./. 0/0:85,0:85:90.16:0,90,923 ./. 0/0:162,0:162:99:0,271,2884 0/0:143,3:146:99:0,148,2270 0/0:112,1:113:99:0,102,1372 1 196799813 . G A 1256.21 . AC=1;AF=0.013;AN=80;BaseQRankSum=1.964;DP=4759;DS;Dels=0.00;FS=0.583;HRun=0;HaplotypeScore=1.0034;InbreedingCoeff=-0.0127;MQ=29.55;MQ0=1840;MQRankSum=0.109;QD=7.10;ReadPosRankSum=2.019 GT:AD:DP:GQ:PL 0/0:108,1:109:99:0,139,1974 0/0:119,0:119:99:0,171,2050 0/0:109,0:109:99:0,150,1794 0/0:129,0:129:99:0,177,2147 0/0:174,0:174:99:0,334,4183 0/0:173,0:173:99:0,307,3829 0/1:118,59:177:99:1302,0,1684 0/0:113,0:113:99:0,138,1751 0/0:125,0:125:99:0,177,2091 0/0:118,0:118:99:0,202,2366 0/0:64,0:64:84.23:0,84,977 0/0:82,0:82:99:0,111,1292 0/0:72,0:72:90.24:0,90,1073 0/0:81,0:81:99:0,117,1388 0/0:175,0:180:99:0,277,3287 0/0:115,0:115:99:0,207,2340 0/0:70,0:70:84.24:0,84,995 0/0:67,1:68:81.60:0,82,1192 0/0:163,0:163:99:0,250,2993 0/0:134,0:134:99:0,226,2599 0/0:103,0:103:99:0,150,1766 0/0:64,0:64:81.24:0,81,991 0/0:121,1:122:99:0,193,2419 0/0:188,0:189:99:0,292,3586 0/0:184,0:184:99:0,325,4077 0/0:155,0:155:99:0,262,3134 0/0:102,0:103:99:0,165,1879 0/0:130,0:130:99:0,205,2372 0/0:101,0:101:99:0,177,2055 0/0:75,0:75:84.21:0,84,973 0/0:96,0:97:99:0,180,2064 0/0:156,0:156:99:0,253,2948 0/0:79,0:79:99:0,114,1379 0/0:145,0:145:99:0,262,3080 0/0:62,0:62:75.20:0,75,884 0/0:161,0:161:99:0,250,2974 ./. 0/0:74,0:74:93.25:0,93,1096 ./. 0/0:129,0:129:99:0,202,2283 0/0:121,0:121:99:0,214,2512 0/0:82,0:83:99:0,114,1403 1 196887426 . G A 2311.06 . 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G A 21343.96 . 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C T 2546.73 . AC=2;AF=0.024;AN=84;BaseQRankSum=-10.161;DP=3362;Dels=0.00;FS=0.811;HRun=2;HaplotypeScore=0.9663;InbreedingCoeff=-0.0244;MQ=54.75;MQ0=14;MQRankSum=6.149;QD=12.99;ReadPosRankSum=0.512 GT:AD:DP:GQ:PL 0/0:70,0:70:99:0,205,2529 0/0:71,0:71:99:0,199,2537 0/0:55,0:55:99:0,147,1865 0/0:122,0:122:99:0,325,4351 0/0:119,0:119:99:0,328,4457 0/0:114,0:114:99:0,319,4334 0/0:120,0:120:99:0,319,4328 0/0:123,0:123:99:0,349,4640 0/0:68,0:68:99:0,193,2423 0/0:54,0:54:99:0,150,1887 0/0:58,0:58:99:0,165,2078 0/0:80,0:80:99:0,229,2872 0/0:57,0:57:99:0,166,2090 0/0:51,0:51:99:0,138,1783 0/0:203,0:203:99:0,542,6846 0/0:55,0:55:99:0,153,1962 0/0:76,0:76:99:0,220,2746 0/0:61,0:61:99:0,175,2170 0/0:94,0:94:99:0,274,3373 0/1:40,36:76:99:1057,0,1119 0/0:84,0:84:99:0,229,2826 0/0:52,0:52:99:0,147,1838 0/0:132,0:132:99:0,367,4956 0/0:94,0:94:99:0,253,3396 0/0:95,0:95:99:0,262,3486 0/1:65,55:120:99:1553,0,2015 0/0:40,0:40:99:0,111,1383 0/0:55,0:55:99:0,153,1924 0/0:67,0:67:99:0,178,2261 0/0:68,0:68:99:0,187,2359 0/0:57,0:57:99:0,153,1953 0/0:91,0:91:99:0,244,3103 0/0:46,0:46:99:0,126,1583 0/0:53,0:53:99:0,150,1898 0/0:62,0:62:99:0,175,2201 0/0:82,0:82:99:0,223,2861 0/0:84,0:87:99:0,241,2955 0/0:80,0:80:99:0,217,2715 0/0:62,0:62:99:0,181,2267 0/0:57,0:57:99:0,156,1996 0/0:66,0:66:99:0,190,2395 0/0:83,0:84:99:0,223,2830 1 197031021 . C T 54160.49 . 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A C 2469.34 . 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T C 74327.62 . 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T A 381.64 . 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G A 46854.97 . 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G C 5758.14 . 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T C 1301.36 . AC=23;AF=0.348;AN=66;BaseQRankSum=-0.285;DP=139;Dels=0.00;FS=1.066;HRun=2;HaplotypeScore=0.1788;InbreedingCoeff=0.1775;MQ=57.87;MQ0=0;MQRankSum=0.597;QD=17.12;ReadPosRankSum=-0.285 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:70,6,0 0/1:2,2:4:48.79:49,0,64 0/0:3,0:3:6.02:0,6,82 0/1:2,1:3:31.62:32,0,56 ./. ./. ./. ./. 0/0:3,0:3:6.02:0,6,74 0/0:6,0:6:18.05:0,18,218 0/0:1,0:1:3.01:0,3,37 1/1:0,4:4:9.03:112,9,0 0/1:2,4:6:21.94:122,0,22 0/1:2,4:6:54.86:108,0,55 0/0:10,0:10:27.08:0,27,316 0/1:6,1:7:6.61:7,0,182 0/0:3,0:3:9.03:0,9,113 0/0:4,0:4:12.04:0,12,149 0/0:5,0:5:15.04:0,15,177 0/1:1,5:6:11.58:154,0,12 0/0:4,0:4:12.03:0,12,138 0/0:3,0:4:9.03:0,9,113 0/1:0,1:1:1.76:41,3,0 ./. ./. 0/1:1,1:2:31.78:36,0,32 ./. ./. 0/0:4,0:4:9.02:0,9,103 0/0:2,0:2:6.02:0,6,77 0/0:3,0:4:6.02:0,6,67 0/0:5,0:5:15.05:0,15,184 0/1:4,2:6:58.32:58,0,131 1/1:0,4:4:6.02:76,6,0 0/1:2,3:5:26.55:80,0,27 1/1:0,7:7:15.01:163,15,0 1/1:0,5:5:12.04:142,12,0 0/0:3,0:3:6.02:0,6,75 1/1:0,5:5:15.05:186,15,0 0/1:1,2:3:31.78:33,0,32 ./. 0/0:2,0:2:6.02:0,6,74 1 202129895 . G A 728.43 . AC=12;AF=0.150;AN=80;BaseQRankSum=1.275;DP=202;Dels=0.00;FS=1.644;HRun=0;HaplotypeScore=0.2348;InbreedingCoeff=0.1849;MQ=59.13;MQ0=0;MQRankSum=-0.990;QD=12.35;ReadPosRankSum=0.541 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,166 0/1:3,2:5:43.64:44,0,72 0/1:3,1:4:24.95:25,0,85 0/1:4,2:6:44.09:44,0,129 0/0:4,0:4:9.03:0,9,122 0/0:2,0:2:6.02:0,6,77 0/0:1,0:1:3.01:0,3,38 0/0:4,0:4:9.03:0,9,119 0/0:3,0:3:9.02:0,9,102 0/0:3,0:3:9.03:0,9,106 ./. 0/0:5,0:5:15.04:0,15,166 0/0:7,0:7:18.05:0,18,201 0/0:5,0:5:15.05:0,15,183 0/0:11,0:11:30.08:0,30,338 0/1:7,1:8:7.49:7,0,210 0/0:3,0:3:9.02:0,9,97 0/0:3,0:3:9.02:0,9,103 0/0:14,0:14:39.10:0,39,430 0/1:2,5:7:40.12:148,0,40 0/0:13,0:13:33.09:0,33,393 0/0:8,0:8:18.04:0,18,196 1/1:0,7:7:15.05:193,15,0 ./. 0/0:1,0:1:3.01:0,3,41 0/0:3,0:3:6.02:0,6,75 0/0:5,0:5:12.04:0,12,148 0/0:3,0:3:6.02:0,6,76 0/0:3,0:3:9.03:0,9,104 0/0:2,0:2:6.02:0,6,74 0/0:1,0:1:3.01:0,3,32 0/0:12,0:12:36.09:0,36,396 0/0:4,0:4:12.03:0,12,134 0/1:0,2:2:0.97:73,6,0 1/1:0,4:5:9.02:101,9,0 0/1:5,1:6:21.93:22,0,134 0/0:4,0:4:12.03:0,12,130 0/0:6,0:6:18.05:0,18,197 0/1:1,8:9:9.37:217,0,9 0/0:3,0:3:9.03:0,9,105 0/0:2,0:2:6.02:0,6,73 0/0:3,0:3:9.02:0,9,100 1 202129930 . G A 9.63 . AC=1;AF=0.013;AN=80;BaseQRankSum=-0.766;DP=235;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.1493;InbreedingCoeff=-0.0629;MQ=58.73;MQ0=0;MQRankSum=1.281;QD=2.41;ReadPosRankSum=-0.563 GT:AD:DP:GQ:PL 0/0:5,0:5:12.04:0,12,149 0/0:4,0:4:12.03:0,12,127 0/0:4,0:4:12.03:0,12,131 0/0:7,0:7:15.05:0,15,205 0/0:2,0:2:6.02:0,6,79 0/0:1,0:1:3.01:0,3,41 0/0:2,0:2:3.01:0,3,45 0/0:5,0:5:9.03:0,9,123 0/0:4,0:4:12.04:0,12,146 0/0:4,0:4:12.03:0,12,143 ./. 0/0:6,0:6:18.05:0,18,207 0/0:7,0:7:21.06:0,21,236 0/0:4,0:4:12.04:0,12,153 0/0:18,0:18:45.13:0,45,534 0/0:5,0:5:12.04:0,12,143 0/0:8,0:8:24.07:0,24,273 0/0:3,0:3:9.02:0,9,103 0/0:12,0:12:24.07:0,24,307 0/0:9,0:9:27.08:0,27,312 0/0:18,0:18:39.12:0,39,504 0/0:8,0:8:18.05:0,18,228 0/0:8,0:8:18.06:0,18,240 ./. 0/0:1,0:1:3.01:0,3,42 0/0:4,0:4:9.03:0,9,122 0/0:3,0:3:6.02:0,6,84 0/1:2,2:4:54.57:55,0,59 0/0:3,0:3:9.02:0,9,101 0/0:2,0:2:6.02:0,6,70 0/0:4,0:4:6.01:0,6,62 0/0:15,0:15:39.11:0,39,458 0/0:4,0:4:9.03:0,9,112 0/0:2,0:2:3.01:0,3,32 0/0:7,0:7:18.05:0,18,210 0/0:5,0:6:12.02:0,12,135 0/0:8,0:8:24.06:0,24,267 0/0:9,0:9:21.06:0,21,259 0/0:10,0:10:24.07:0,24,300 0/0:3,0:3:6.02:0,6,67 0/0:4,0:4:12.03:0,12,135 0/0:2,0:2:6.02:0,6,69 1 202183308 . C T 3816.78 . AC=32;AF=0.381;AN=84;BaseQRankSum=-11.655;DP=326;Dels=0.00;FS=8.690;HRun=1;HaplotypeScore=0.1779;InbreedingCoeff=0.3839;MQ=58.34;MQ0=0;MQRankSum=1.069;QD=23.85;ReadPosRankSum=-2.145 GT:AD:DP:GQ:PL 1/1:0,8:8:18.06:234,18,0 0/1:1,2:3:30.29:62,0,30 0/0:5,0:5:15.05:0,15,190 0/0:21,0:21:54.17:0,54,711 0/0:15,0:15:42.13:0,42,547 0/0:8,0:8:21.07:0,21,283 0/1:5,7:12:99:189,0,167 0/0:17,0:17:42.14:0,42,581 0/0:4,0:4:9.03:0,9,118 0/1:5,3:8:84.29:84,0,163 0/0:2,0:2:6.02:0,6,78 1/1:0,5:5:15.04:176,15,0 0/0:4,0:4:12.03:0,12,135 1/1:0,2:2:6.02:72,6,0 1/1:0,19:19:51.15:609,51,0 0/1:3,3:6:84.88:85,0,96 1/1:0,5:5:12.04:149,12,0 0/0:4,0:4:12.04:0,12,152 0/0:9,0:9:21.07:0,21,270 0/0:21,0:21:45.15:0,45,605 0/1:2,7:9:20.69:230,0,21 0/1:3,6:9:88.50:153,0,89 0/0:20,0:20:51.17:0,51,690 0/1:4,4:8:99:122,0,102 1/1:0,13:13:39.12:467,39,0 0/0:5,0:5:12.04:0,12,166 0/1:1,3:4:32.56:39,0,33 0/0:4,0:4:12.04:0,12,155 1/1:0,10:10:24.08:305,24,0 1/1:0,7:7:21.06:250,21,0 1/1:0,2:2:6.02:66,6,0 0/1:10,5:15:99:144,0,246 0/1:3,5:8:60.15:135,0,60 0/0:8,0:8:21.07:0,21,271 0/0:2,0:2:6.02:0,6,79 1/1:0,2:2:6.02:69,6,0 0/0:7,0:7:15.05:0,15,187 0/0:3,0:3:9.03:0,9,112 0/0:3,1:4:9.03:0,9,116 0/0:2,0:2:6.02:0,6,68 0/0:1,0:1:3.01:0,3,39 1/1:0,5:5:15.04:176,15,0 1 202183327 . C T 552.67 . 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TG T 219.38 . 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CAAATT C 552.81 . 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T C 19450.57 . 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T TC 23534.30 . 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A T 93.91 . 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T C 2142.45 . 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G C 16142.98 . 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C G 7879.77 . 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C T 236.51 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.664;DP=455;Dels=0.00;FS=5.130;HRun=0;HaplotypeScore=0.2794;InbreedingCoeff=-0.0169;MQ=58.93;MQ0=0;MQRankSum=-1.009;QD=8.76;ReadPosRankSum=-0.879 GT:AD:DP:GQ:PL 0/0:9,0:9:27.08:0,27,328 0/0:7,0:7:21.07:0,21,263 0/0:3,0:3:9.02:0,9,99 0/0:10,0:10:24.08:0,24,305 0/0:9,0:9:27.07:0,27,328 0/0:9,0:9:24.07:0,24,304 0/0:12,0:12:27.06:0,27,331 0/0:10,0:10:30.10:0,30,401 0/0:6,0:6:18.05:0,18,218 0/0:8,0:8:21.06:0,21,257 0/0:6,0:6:18.05:0,18,223 0/0:7,0:7:21.05:0,21,240 0/0:9,0:9:24.04:0,24,268 0/0:10,0:10:30.08:0,30,363 0/0:26,0:26:69.21:0,69,846 0/0:9,0:9:27.08:0,27,331 0/0:4,0:4:12.04:0,12,153 0/0:7,0:7:18.05:0,18,218 0/0:18,0:18:48.14:0,48,588 0/0:28,0:28:78.20:0,78,936 0/0:17,0:18:48.13:0,48,583 0/0:11,0:12:30.10:0,30,382 0/0:15,0:15:45.12:0,45,564 0/0:9,0:9:21.05:0,21,270 0/0:10,0:10:30.08:0,30,382 0/0:8,0:8:24.07:0,24,295 0/0:6,0:6:12.04:0,12,158 0/0:10,0:10:27.08:0,27,325 0/0:9,0:9:18.06:0,18,227 0/0:10,0:10:30.07:0,30,366 0/0:8,0:8:24.07:0,24,295 0/1:15,12:27:99:283,0,452 0/0:9,0:9:27.08:0,27,334 0/0:12,0:12:30.03:0,30,311 0/0:11,0:11:24.08:0,24,314 0/0:6,0:6:18.06:0,18,220 0/0:19,0:20:48.14:0,48,588 0/0:9,0:10:21.07:0,21,264 0/0:10,0:10:27.07:0,27,321 0/0:8,0:8:21.06:0,21,250 0/0:10,0:10:27.09:0,27,341 0/0:10,0:10:30.09:0,30,368 1 203033005 . T TA 361.67 . AC=11;AF=0.131;AN=84;BaseQRankSum=-9.550;DP=3433;DS;FS=2003.010;HRun=1;HaplotypeScore=234.9192;InbreedingCoeff=-0.1566;MQ=59.31;MQ0=0;MQRankSum=4.354;QD=0.40;ReadPosRankSum=-21.245 GT:AD:DP:GQ:PL 0/0:65,0:65:96.71:0,97,1734 0/0:73,0:73:23.13:0,23,1972 0/0:58,0:58:99:0,100,1587 0/1:127,23:150:27.50:27,0,3486 0/0:116,0:116:99:0,169,3003 0/1:84,0:84:34.41:34,0,1962 0/0:83,0:81:4.57:0,5,2061 0/0:90,0:85:15.11:0,15,2241 0/0:72,0:72:99:0,124,1897 0/0:52,8:60:43.01:0,43,1377 0/1:64,0:64:7.25:7,0,1467 0/1:45,0:45:55.99:56,0,1020 0/0:65,0:65:43.61:0,44,1573 0/1:47,9:55:71.46:71,0,1356 0/0:186,0:186:99:0,177,4346 0/0:58,0:58:61.76:0,62,1598 0/0:77,0:76:99:0,139,2106 0/1:52,8:60:18.64:19,0,1475 0/1:98,15:113:99:114,0,2659 0/0:135,0:135:99:0,137,3594 0/0:107,0:107:99:0,112,2340 0/0:76,0:75:27.26:0,27,1781 0/1:144,0:144:20.36:20,0,3501 0/0:107,0:103:63.80:0,64,2738 0/0:90,0:89:49:0,49,2224 0/0:76,0:72:29.47:0,29,1868 0/1:34,9:43:57.22:57,0,928 0/0:62,0:62:23.89:0,24,1423 0/0:68,0:67:15.99:0,16,1648 0/0:73,0:73:5.02:0,5,1636 0/0:56,0:56:44.72:0,45,1270 0/0:127,17:144:99:0,107,3745 0/0:78,0:77:21.68:0,22,1734 0/0:51,0:51:32.39:0,32,1368 0/1:67,0:66:88.56:89,0,1270 0/0:50,6:56:11.72:0,12,1444 0/0:87,13:100:71.27:0,71,2310 0/1:69,0:69:10.72:11,0,1795 0/0:65,0:65:99:0,115,1757 0/0:71,0:71:98.16:0,98,1990 0/0:59,0:59:45.06:0,45,1535 0/0:61,0:60:99:0,144,1773 1 203033007 . C A 100.89 . AC=2;AF=0.024;AN=84;BaseQRankSum=-14.029;DP=3319;DS;Dels=0.00;FS=1383.862;HRun=1;HaplotypeScore=5.6768;InbreedingCoeff=-0.0692;MQ=59.30;MQ0=0;MQRankSum=-0.747;QD=0.98;ReadPosRankSum=-16.469 GT:AD:DP:GQ:PL 0/0:59,5:64:99:0,112,1766 0/0:62,10:72:31.14:0,31,1797 0/0:52,7:59:99:0,99,1623 0/0:133,3:136:99:0,310,3979 0/0:102,14:116:99:0,169,3080 0/0:71,11:82:1.76:3,0,1895 0/0:68,13:81:18.39:0,18,2117 0/0:77,12:89:3.31:0,3,2080 0/0:66,8:74:99:0,132,1974 0/0:54,1:55:99:0,117,1422 0/0:48,14:62:1.78:3,0,1427 0/1:37,7:44:75.57:76,0,1053 0/0:52,7:59:82.72:0,83,1710 0/0:50,3:53:99:0,101,1565 0/0:158,27:185:99:0,265,4646 0/0:47,11:58:65.68:0,66,1495 0/0:66,5:71:99:0,141,2162 0/0:51,4:55:99:0,132,1634 0/0:106,4:110:99:0,202,3080 0/0:111,20:131:99:0,166,3345 0/0:90,13:103:99:0,190,2557 0/0:59,17:76:24.94:0,25,1728 0/0:113,24:137:41.84:0,42,3625 0/0:97,11:109:56.64:0,57,2856 0/0:73,15:88:81.61:0,82,2350 0/0:62,11:73:2.34:1,0,1828 0/0:37,1:38:90.27:0,90,1127 0/0:53,6:59:98.52:0,99,1550 0/0:57,8:65:30.25:0,30,1711 0/0:55,13:68:0.36:11,0,1699 0/0:46,6:52:97.79:0,98,1493 0/0:132,4:136:99:0,337,4179 0/0:61,16:77:26.83:0,27,1700 0/0:48,4:52:37.86:0,38,1577 0/1:46,13:59:84.19:84,0,1301 0/0:53,3:56:99:0,126,1563 0/0:87,4:91:99:0,179,2464 0/0:56,13:69:4.47:0,4,1724 0/0:57,7:64:99:0,109,1745 0/0:67,6:73:90.58:0,91,2018 0/0:50,6:56:40.20:0,40,1539 0/0:56,6:62:99:0,125,1802 1 203053787 . C T 107.66 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.032;DP=749;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3956;InbreedingCoeff=-0.0137;MQ=59.20;MQ0=0;MQRankSum=0.315;QD=13.46;ReadPosRankSum=0.281 GT:AD:DP:GQ:PL 0/0:16,0:16:45.13:0,45,527 0/0:16,0:16:45.13:0,45,534 0/0:8,0:8:24.07:0,24,294 0/0:37,0:37:93.29:0,93,1203 0/0:28,0:28:72.23:0,72,952 0/0:16,0:16:42.14:0,42,563 0/0:17,0:17:36.11:0,36,479 0/0:14,0:14:39.12:0,39,496 0/0:12,0:12:33.09:0,33,385 0/0:14,0:14:39.11:0,39,442 0/0:15,0:15:39.10:0,39,442 0/0:15,0:15:42.12:0,42,510 0/0:11,0:11:27.07:0,27,337 0/0:29,0:29:75.21:0,75,886 0/0:50,0:50:99:0,132,1567 0/0:22,0:22:51.15:0,51,618 0/0:17,0:17:51.14:0,51,591 0/0:13,0:13:33.07:0,33,381 0/0:32,0:32:81.22:0,81,984 0/0:18,0:18:45.13:0,45,556 0/0:24,0:24:63.17:0,63,740 0/0:23,0:23:60.17:0,60,714 0/0:39,0:39:96.31:0,96,1293 0/0:3,0:3:9.01:0,9,102 0/0:18,0:18:42.14:0,42,572 0/0:10,0:10:27.09:0,27,371 0/0:8,0:8:21.06:0,21,261 0/0:18,0:18:48.14:0,48,562 0/0:11,0:11:27.08:0,27,326 0/0:12,0:12:36.10:0,36,403 0/1:3,5:8:81.93:154,0,82 0/0:20,0:20:42.12:0,42,513 0/0:15,0:15:36.10:0,36,425 0/0:19,0:19:54.15:0,54,613 0/0:13,0:13:36.10:0,36,417 0/0:14,0:14:39.11:0,39,456 0/0:22,0:23:57.16:0,57,686 0/0:11,0:11:27.07:0,27,319 0/0:15,0:15:45.13:0,45,531 0/0:14,0:14:39.10:0,39,440 0/0:17,0:17:45.12:0,45,537 0/0:14,0:14:39.10:0,39,461 1 203140671 . G A 1705.94 . AC=6;AF=0.071;AN=84;BaseQRankSum=-2.654;DP=954;Dels=0.00;FS=10.751;HRun=0;HaplotypeScore=0.9543;InbreedingCoeff=-0.0774;MQ=58.67;MQ0=0;MQRankSum=2.135;QD=11.15;ReadPosRankSum=2.083 GT:AD:DP:GQ:PL 0/0:17,0:17:39.12:0,39,466 0/0:16,0:16:45.13:0,45,542 0/1:7,5:12:99:141,0,141 0/0:56,0:56:99:0,156,1964 0/0:46,0:46:99:0,123,1580 0/1:23,18:41:99:478,0,610 0/1:11,21:32:99:523,0,306 0/0:24,0:24:63.19:0,63,787 0/0:17,0:17:45.13:0,45,537 0/0:19,0:19:57.16:0,57,662 0/0:17,0:17:48.13:0,48,553 0/0:10,0:10:30.09:0,30,356 0/0:8,0:8:24.04:0,24,261 0/0:7,0:7:21.06:0,21,245 0/0:61,0:62:99:0,159,1841 0/0:19,0:19:57.15:0,57,653 0/0:17,0:17:51.12:0,51,583 0/1:9,7:16:99:183,0,250 0/0:40,0:40:99:0,102,1177 0/0:32,0:32:87.24:0,87,1028 0/1:14,8:23:99:236,0,361 0/0:15,0:15:45.13:0,45,533 0/0:43,0:43:99:0,117,1516 0/0:32,0:33:93.29:0,93,1182 0/0:23,0:23:60.19:0,60,774 0/0:11,0:11:27.08:0,27,332 0/0:12,0:12:33.07:0,33,363 0/0:20,0:20:54.16:0,54,647 0/0:16,0:16:48.14:0,48,570 0/0:14,0:14:36.10:0,36,427 0/0:12,0:12:33.09:0,33,378 0/1:19,10:29:99:250,0,429 0/0:20,1:21:18.91:0,19,574 0/0:18,0:18:39.12:0,39,475 0/0:11,0:11:24.07:0,24,273 0/0:25,0:25:57.17:0,57,710 0/0:29,0:29:75.23:0,75,919 0/0:18,0:18:48.14:0,48,569 0/0:22,0:22:60.17:0,60,707 0/0:13,0:13:36.11:0,36,433 0/0:22,0:22:66.13:0,66,742 0/0:16,0:16:45.12:0,45,515 1 203143725 . G C 3701.51 . AC=19;AF=0.226;AN=84;BaseQRankSum=-0.105;DP=641;Dels=0.00;FS=0.404;HRun=1;HaplotypeScore=0.2423;InbreedingCoeff=-0.0281;MQ=58.70;MQ0=0;MQRankSum=-1.173;QD=16.02;ReadPosRankSum=-1.523 GT:AD:DP:GQ:PL 0/0:14,0:14:36.12:0,36,467 0/0:11,0:11:30.09:0,30,380 0/0:9,0:9:27.09:0,27,342 0/1:12,17:29:99:474,0,323 0/0:30,0:30:84.27:0,84,1108 0/0:32,0:32:78.24:0,78,1036 0/0:13,0:13:39.13:0,39,518 0/1:7,10:17:99:333,0,222 1/1:0,4:4:12.02:141,12,0 0/1:8,4:12:83.28:83,0,246 0/1:8,8:16:99:169,0,253 0/1:6,7:13:99:219,0,191 0/0:11,0:11:27.08:0,27,346 0/1:7,4:11:99:119,0,184 0/0:39,0:39:99:0,102,1302 0/0:11,0:11:33.11:0,33,418 0/1:10,16:26:99:481,0,240 0/0:8,0:8:24.06:0,24,294 0/0:9,0:9:21.06:0,21,257 0/0:27,0:28:72.22:0,72,906 0/1:6,7:13:99:154,0,161 0/1:8,7:15:99:197,0,218 1/1:0,25:25:69.20:884,69,0 0/0:15,0:15:39.13:0,39,532 0/0:29,0:29:72.24:0,72,991 0/0:21,0:22:57.18:0,57,753 0/1:5,4:9:99:118,0,161 0/0:7,0:7:21.06:0,21,257 0/1:7,4:11:99:117,0,189 0/0:5,0:5:15.02:0,15,170 0/1:8,3:11:69.27:69,0,275 0/0:25,0:25:60.19:0,60,788 0/0:11,0:11:33.10:0,33,406 0/0:12,0:12:36.11:0,36,445 0/0:12,0:12:36.11:0,36,438 0/1:2,1:3:29.55:30,0,60 0/0:23,0:23:54.15:0,54,670 0/0:13,0:13:33.09:0,33,412 0/0:7,0:7:21.06:0,21,258 0/1:5,3:8:94.62:95,0,135 0/0:14,0:14:36.10:0,36,444 0/1:6,2:8:19.74:20,0,182 1 203144495 . CAGCCT C 543.49 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.084;DP=2673;DS;FS=512.215;HRun=0;HaplotypeScore=307.3084;InbreedingCoeff=-0.0244;MQ=57.30;MQ0=0;MQRankSum=0.486;QD=3.42;ReadPosRankSum=-21.507 GT:AD:DP:GQ:PL 0/0:77,0:77:99:0,160,5289 0/0:49,0:49:99:0,101,3438 0/0:51,0:51:89.34:0,89,3317 0/0:74,0:74:28.95:0,29,4803 0/1:65,0:65:78.08:78,0,3773 0/0:78,0:74:94.45:0,94,4222 0/0:73,0:70:54.16:0,54,4476 0/0:93,0:91:99:0,170,6582 0/0:62,0:62:99:0,119,3589 0/0:56,0:56:99:0,101,3278 0/0:51,0:51:83.34:0,83,2885 0/0:48,0:48:99:0,116,3181 0/0:48,0:47:99:0,126,3597 0/0:49,0:49:99:0,105,3285 0/0:110,0:110:99:0,202,7644 0/0:54,0:54:99:0,116,3896 0/0:58,0:58:99:0,100,3740 0/0:48,0:48:80.42:0,80,3199 0/0:57,0:58:70.43:0,70,3601 0/0:59,0:59:92.33:0,92,3461 0/0:66,0:66:67.49:0,67,4614 0/0:77,0:77:99:0,161,5143 0/0:83,0:83:99:0,141,5504 0/0:81,0:78:99:0,177,5250 0/0:112,0:106:99:0,151,7029 0/0:93,0:89:99:0,140,5647 0/0:46,0:46:76.87:0,77,2972 0/0:55,0:55:99:0,110,3280 0/0:38,0:38:94.22:0,94,2215 0/0:62,0:62:99:0,111,4002 0/0:43,0:43:47.74:0,48,2807 0/0:80,0:79:99:0,131,4936 0/0:76,0:76:99:0,149,4934 0/0:44,0:44:47.36:0,47,2717 0/0:41,0:41:29.38:0,29,2649 0/0:39,0:39:84.60:0,85,2403 0/1:60,34:94:99:537,0,4037 0/0:71,0:71:99:0,162,5113 0/0:56,0:56:92.48:0,92,3693 0/0:62,0:62:99:0,110,4042 0/0:42,0:42:94.27:0,94,3137 0/0:51,0:51:89.51:0,90,3552 1 203144500 . T C 19363.75 . AC=41;AF=0.488;AN=84;BaseQRankSum=-27.964;DP=4118;DS;Dels=0.01;FS=2438.065;HRun=4;HaplotypeScore=6.0466;InbreedingCoeff=-0.9588;MQ=58.20;MQ0=0;MQRankSum=0.444;QD=4.80;ReadPosRankSum=-27.425 GT:AD:DP:GQ:PL 0/1:53,39:92:99:275,0,1509 0/1:34,29:63:99:352,0,950 0/1:39,29:69:99:295,0,1055 0/1:61,106:168:99:1306,0,1588 0/1:42,110:152:99:1178,0,1243 0/1:44,82:127:99:559,0,1071 0/1:47,73:120:99:568,0,1304 0/1:69,73:142:99:509,0,2068 0/0:39,40:80:8.84:0,9,1187 0/1:37,31:68:99:351,0,979 0/1:30,42:72:99:415,0,755 0/1:34,27:61:99:211,0,984 0/1:39,28:68:99:306,0,1101 0/1:36,51:87:99:741,0,934 0/1:90,111:201:99:909,0,2307 0/1:45,43:88:99:339,0,1215 0/1:43,39:82:99:295,0,1154 0/1:36,32:68:99:302,0,1080 0/1:41,60:101:99:454,0,1105 0/1:40,98:139:99:910,0,928 0/1:48,72:120:99:816,0,1366 0/1:56,71:128:99:725,0,1453 0/1:73,88:161:99:1037,0,1977 0/1:51,57:109:99:330,0,1550 0/1:81,64:145:99:291,0,2274 0/1:60,57:117:99:221,0,1606 0/1:33,30:64:99:392,0,880 0/1:35,44:79:99:462,0,920 0/1:21,29:51:99:190,0,619 0/1:43,31:75:99:343,0,1234 0/1:31,40:72:99:485,0,723 0/1:61,72:134:99:509,0,1492 0/1:56,65:122:99:488,0,1449 0/1:30,40:70:99:308,0,852 0/1:26,34:60:99:534,0,697 0/1:24,28:52:99:447,0,664 0/1:48,35:84:90.23:90,0,1342 0/1:51,37:88:99:352,0,1506 0/1:43,36:79:99:278,0,1127 0/1:45,46:91:99:360,0,1240 0/1:34,25:59:99:204,0,922 0/1:38,38:76:99:226,0,1070 1 203186950 . C CAGACCATGGCCCCGCCCAGTCCCT 28094.96 . 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T TG 5.51 . 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G GGC 32.62 . 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G C 195.56 . 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G GC 23.70 . 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C T 2351.54 . 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G A 15768.52 . 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C T 36475.63 . 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A C 11765.14 . 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G A 7616.17 . 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C A 8.94 . 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G A 3153.71 . 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G A 6234.10 . 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T C 1858.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.501;DP=2969;Dels=0.00;FS=0.975;HRun=0;HaplotypeScore=2.3435;InbreedingCoeff=-0.0244;MQ=59.22;MQ0=0;MQRankSum=0.300;QD=10.44;ReadPosRankSum=0.858 GT:AD:DP:GQ:PL 0/0:50,1:51:99:0,135,1595 0/0:65,1:67:99:0,165,2012 0/0:42,0:42:99:0,123,1452 0/0:163,0:164:99:0,394,4905 0/0:138,0:141:99:0,343,4267 0/1:44,54:98:99:1348,0,1180 0/1:56,24:80:99:574,0,1658 0/0:88,1:91:99:0,235,2810 0/0:53,0:54:99:0,144,1709 0/0:49,0:50:99:0,144,1670 0/0:49,0:51:99:0,144,1636 0/0:46,0:48:99:0,123,1467 0/0:42,0:42:99:0,120,1409 0/0:61,0:61:99:0,165,2004 0/0:162,0:165:99:0,400,4792 0/0:57,0:57:99:0,168,1954 0/0:54,0:54:99:0,150,1777 0/0:42,0:43:99:0,120,1389 0/0:104,0:105:99:0,262,3117 0/0:116,1:119:99:0,307,3722 0/0:74,0:74:99:0,202,2412 0/0:57,0:57:99:0,141,1720 0/0:167,1:170:99:0,427,5312 0/0:80,0:81:99:0,199,2438 0/0:110,0:111:99:0,298,3626 0/0:86,0:86:99:0,220,2638 0/0:43,0:45:99:0,126,1471 0/0:38,0:39:99:0,105,1239 0/0:47,0:47:99:0,126,1514 0/0:43,0:43:99:0,114,1374 0/0:56,0:58:99:0,147,1723 0/0:88,0:88:99:0,223,2718 0/0:72,0:72:99:0,199,2326 0/0:40,0:42:99:0,117,1334 0/0:40,0:40:99:0,108,1313 0/0:37,1:38:99:0,108,1280 0/0:60,1:62:99:0,147,1786 0/0:53,0:53:99:0,147,1746 0/0:48,1:49:99:0,132,1561 0/0:40,0:41:99:0,108,1281 0/0:37,0:37:99:0,99,1172 0/0:52,0:53:99:0,135,1626 1 204436066 . G A 2937.56 . AC=16;AF=0.190;AN=84;BaseQRankSum=-2.764;DP=728;Dels=0.00;FS=2.989;HRun=3;HaplotypeScore=0.4821;InbreedingCoeff=-0.2363;MQ=58.99;MQ0=0;MQRankSum=0.491;QD=13.41;ReadPosRankSum=0.001 GT:AD:DP:GQ:PL 0/1:9,3:12:72.21:72,0,281 0/0:6,0:6:18.05:0,18,213 0/0:8,0:8:21.04:0,21,229 0/0:33,0:33:96.30:0,96,1228 0/0:26,0:27:78.23:0,78,959 0/1:8,10:18:99:298,0,263 0/0:18,0:18:51.11:0,51,620 0/1:10,7:17:99:211,0,313 0/1:5,4:9:99:119,0,152 0/1:6,8:14:99:216,0,115 0/1:5,8:13:99:251,0,140 0/0:17,0:17:51.14:0,51,605 0/0:8,0:8:24.07:0,24,292 0/0:30,0:30:84.26:0,84,1051 0/0:43,0:43:99:0,117,1422 0/0:22,1:23:33.07:0,33,759 0/0:12,0:12:36.06:0,36,396 0/0:17,0:17:48.13:0,48,569 0/0:29,0:29:84.24:0,84,1003 0/0:27,0:27:81.21:0,81,941 0/0:24,0:24:66.20:0,66,806 0/1:5,3:8:84.21:84,0,146 0/0:37,1:38:70.98:0,71,1310 0/0:19,0:19:48.15:0,48,615 0/0:16,0:16:48.15:0,48,613 0/1:15,8:23:99:229,0,467 0/0:13,0:13:39.11:0,39,465 0/0:12,0:12:36.10:0,36,411 0/0:9,0:9:27.08:0,27,316 0/1:5,7:12:99:216,0,106 0/1:4,8:12:99:198,0,124 0/0:24,0:24:66.19:0,66,809 0/1:7,7:14:99:212,0,200 0/0:13,0:13:39.11:0,39,467 0/0:10,0:10:27.07:0,27,321 0/1:8,7:15:99:172,0,230 0/1:7,5:12:99:140,0,218 0/0:14,0:14:42.10:0,42,472 0/1:4,9:13:99:289,0,108 0/1:9,5:14:99:143,0,267 0/0:18,1:19:16.35:0,16,546 0/1:4,9:13:99:249,0,101 1 204948659 . A G 5727.40 . 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G A 6979.63 . 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A C 1499.49 . 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C T 10869.48 . 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A G 212.75 . 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G A 704.43 . AC=4;AF=0.048;AN=84;BaseQRankSum=-2.622;DP=707;Dels=0.00;FS=0.709;HRun=1;HaplotypeScore=0.5340;InbreedingCoeff=-0.0502;MQ=58.71;MQ0=0;MQRankSum=-0.895;QD=10.51;ReadPosRankSum=-0.635 GT:AD:DP:GQ:PL 0/0:20,0:20:51.16:0,51,647 0/0:11,0:11:33.10:0,33,396 0/0:17,0:17:45.14:0,45,568 0/0:25,0:25:69.22:0,69,912 0/0:24,0:24:63.21:0,63,859 0/1:8,7:15:99:216,0,211 0/1:7,9:16:99:259,0,192 0/0:15,0:15:42.14:0,42,561 0/0:14,0:14:39.13:0,39,500 0/0:15,0:15:39.12:0,39,492 0/0:13,0:13:36.11:0,36,454 0/0:15,0:15:42.13:0,42,539 0/0:10,0:10:30.08:0,30,353 0/0:14,0:14:36.11:0,36,462 0/0:41,0:41:99:0,99,1292 0/0:21,0:21:57.18:0,57,736 0/0:11,0:11:30.09:0,30,379 0/0:9,0:9:27.06:0,27,324 0/0:17,0:17:42.13:0,42,526 0/0:34,0:34:84.24:0,84,1052 0/0:27,0:27:75.23:0,75,948 0/0:21,0:21:60.17:0,60,729 0/0:24,0:24:66.21:0,66,880 0/0:13,0:14:33.11:0,33,450 0/0:22,0:22:54.18:0,54,741 0/0:12,0:12:33.11:0,33,435 0/0:13,0:13:39.12:0,39,496 0/0:14,0:14:39.12:0,39,496 0/0:13,0:13:24.08:0,24,325 0/0:14,0:14:42.13:0,42,527 0/0:11,0:11:33.07:0,33,393 0/1:14,10:24:99:249,0,427 0/0:16,0:16:45.14:0,45,560 0/0:13,0:13:33.11:0,33,427 0/0:10,0:10:24.08:0,24,306 0/0:13,0:13:39.12:0,39,492 0/0:17,0:17:48.13:0,48,574 0/1:9,3:12:67.59:68,0,303 0/0:17,0:17:48.15:0,48,608 0/0:14,0:14:33.11:0,33,434 0/0:16,0:16:42.12:0,42,528 0/0:13,0:13:36.12:0,36,464 1 205197808 . C T 1119.41 . 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G C 3057.02 . 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G A 2661 . 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G A 191.44 . 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A G 7012.11 . AC=80;AF=0.976;AN=82;BaseQRankSum=3.142;DP=199;Dels=0.00;FS=3.788;HRun=0;HaplotypeScore=0.0784;InbreedingCoeff=-0.0716;MQ=58.64;MQ0=0;MQRankSum=0.258;QD=35.24;ReadPosRankSum=-2.578 GT:AD:DP:GQ:PL 1/1:0,9:9:24.05:296,24,0 ./. 1/1:0,5:5:15.02:178,15,0 0/1:5,7:12:99:249,0,142 0/1:2,2:4:60.19:70,0,60 1/1:0,4:4:12.04:161,12,0 1/1:0,6:6:18.06:250,18,0 1/1:0,9:9:27.09:358,27,0 1/1:0,6:6:18.06:220,18,0 1/1:0,3:3:9.03:116,9,0 1/1:0,1:1:3.01:38,3,0 1/1:0,2:2:6.02:71,6,0 1/1:0,2:2:6.02:76,6,0 1/1:0,4:4:12.03:146,12,0 1/1:0,12:12:36.11:442,36,0 1/1:0,1:1:3.01:36,3,0 1/1:0,3:3:9.03:112,9,0 1/1:0,4:4:12.04:154,12,0 1/1:0,5:5:15.05:190,15,0 1/1:0,3:3:9.03:112,9,0 1/1:0,11:11:27.08:337,27,0 1/1:0,3:3:9.02:100,9,0 1/1:0,13:13:39.09:486,39,0 1/1:0,3:3:9.03:119,9,0 1/1:0,4:4:12.04:156,12,0 1/1:0,6:6:18.06:239,18,0 1/1:0,3:3:9.03:116,9,0 1/1:0,3:3:9.03:116,9,0 1/1:0,3:3:9.03:111,9,0 1/1:0,5:5:15.05:187,15,0 1/1:0,4:4:12.02:138,12,0 1/1:0,2:2:6.01:67,6,0 1/1:0,8:8:21.07:263,21,0 1/1:0,2:2:6.02:75,6,0 1/1:0,2:2:6.02:76,6,0 1/1:0,2:2:6.02:79,6,0 1/1:0,6:6:18.05:211,18,0 1/1:0,3:3:9.03:107,9,0 1/1:0,5:5:15.05:184,15,0 1/1:0,7:7:21.07:263,21,0 1/1:0,4:4:12.04:148,12,0 1/1:0,5:5:12.04:159,12,0 1 205633769 . A C 50.35 . AC=1;AF=0.012;AN=84;BaseQRankSum=-17.716;DP=2011;Dels=0.00;FS=24.477;HRun=3;HaplotypeScore=1.0798;InbreedingCoeff=-0.0221;MQ=58.98;MQ0=0;MQRankSum=-0.676;QD=1.23;ReadPosRankSum=-8.163 GT:AD:DP:GQ:PL 0/0:28,5:33:72.14:0,72,789 0/0:29,3:32:46.48:0,46,739 0/0:38,6:44:53.08:0,53,1105 0/0:96,10:106:99:0,240,2646 0/0:71,7:78:99:0,162,1915 0/0:67,8:75:99:0,125,1904 0/0:48,6:54:72.13:0,72,1147 0/0:52,8:61:99:0,135,1424 0/0:38,5:43:36.26:0,36,1067 0/0:25,5:31:66.14:0,66,714 0/0:30,1:31:87.19:0,87,939 0/0:31,5:36:84.18:0,84,930 0/0:23,3:26:63.13:0,63,693 0/0:31,3:34:81.19:0,81,894 0/0:111,18:129:99:0,247,2935 0/0:35,6:43:71.48:0,71,977 0/0:32,8:40:63.63:0,64,999 0/0:22,7:29:7.08:0,7,609 0/0:33,12:45:1.96:2,0,885 0/0:66,5:71:99:0,192,2142 0/1:26,15:41:96.36:96,0,765 0/0:37,2:39:99:0,111,1198 0/0:94,10:104:99:0,210,2536 0/0:51,5:57:99:0,120,1368 0/0:67,3:70:99:0,159,1793 0/0:39,3:42:51.74:0,52,925 0/0:22,2:24:60.13:0,60,646 0/0:28,5:33:69.15:0,69,764 0/0:27,2:29:72.17:0,72,795 0/0:26,7:33:47.46:0,47,721 0/0:38,5:43:99:0,105,1160 0/0:54,5:59:99:0,135,1500 0/0:32,1:35:84.17:0,84,882 0/0:43,3:46:99:0,117,1313 0/0:32,4:37:57.55:0,58,897 0/0:24,3:27:63.15:0,63,689 0/0:47,15:62:18.90:0,19,1254 0/0:28,5:33:69.19:0,69,779 0/0:34,5:39:76.45:0,76,986 0/0:29,11:40:49.52:0,50,788 0/0:32,2:34:90.24:0,90,1017 0/0:37,6:43:99:0,102,1143 1 205764031 . G A 754.52 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.976;DP=2088;Dels=0.00;FS=4.468;HRun=2;HaplotypeScore=0.9089;InbreedingCoeff=-0.0244;MQ=59.17;MQ0=0;MQRankSum=2.507;QD=10.48;ReadPosRankSum=-0.419 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,108,1412 0/0:45,0:45:99:0,114,1474 0/0:33,0:33:87.28:0,87,1124 0/0:82,0:82:99:0,220,2972 0/0:77,0:77:99:0,211,2923 0/0:55,0:55:99:0,147,2023 0/0:47,0:47:99:0,126,1757 0/0:55,0:55:99:0,141,1941 0/0:40,0:40:99:0,114,1432 0/0:54,0:54:99:0,150,1914 0/0:31,0:31:87.28:0,87,1114 0/0:42,0:42:99:0,123,1542 0/0:36,0:36:99:0,99,1270 0/0:40,0:40:99:0,111,1426 0/0:142,0:142:99:0,361,4655 0/0:26,0:26:69.22:0,69,897 0/0:40,0:40:99:0,114,1437 0/0:46,0:46:99:0,135,1711 0/0:48,0:49:99:0,132,1685 0/0:72,1:73:99:0,172,2438 0/0:42,0:42:99:0,108,1400 0/0:40,0:40:99:0,114,1444 0/0:86,0:86:99:0,229,3151 0/0:47,0:47:99:0,126,1712 0/0:54,0:54:99:0,157,2143 0/0:46,0:46:99:0,129,1745 0/0:24,0:24:66.21:0,66,834 0/0:42,0:42:99:0,117,1496 0/0:39,0:39:99:0,111,1436 0/1:14,23:37:99:568,0,401 0/1:25,10:35:99:249,0,792 0/0:61,0:61:99:0,159,2034 0/0:44,0:44:99:0,120,1513 0/0:52,0:52:99:0,147,1876 0/0:35,0:35:99:0,102,1311 0/0:39,0:39:99:0,102,1290 0/0:85,0:85:99:0,223,2861 0/0:48,0:48:99:0,141,1778 0/0:37,0:37:99:0,108,1361 0/0:49,0:49:99:0,144,1821 0/0:55,0:55:99:0,153,1924 0/0:36,0:36:99:0,105,1337 1 205810947 . C T 746.01 . AC=5;AF=0.060;AN=84;BaseQRankSum=-4.165;DP=454;Dels=0.00;FS=10.529;HRun=1;HaplotypeScore=0.1451;InbreedingCoeff=-0.0684;MQ=58.94;MQ0=0;MQRankSum=0.866;QD=12.23;ReadPosRankSum=-1.752 GT:AD:DP:GQ:PL 0/0:8,0:8:21.07:0,21,278 0/0:12,0:12:33.10:0,33,413 0/0:16,0:16:42.13:0,42,547 0/0:14,0:14:33.11:0,33,457 0/0:9,0:9:27.09:0,27,363 0/0:10,0:10:27.09:0,27,377 0/0:12,0:12:33.11:0,33,457 0/0:5,0:5:12.04:0,12,165 0/0:13,0:13:36.11:0,36,461 0/0:14,0:14:36.12:0,36,471 0/0:12,0:12:33.11:0,33,435 0/0:15,0:15:39.13:0,39,510 0/0:5,0:5:15.05:0,15,192 0/0:5,0:5:12.04:0,12,152 0/0:35,0:35:96.31:0,96,1238 0/0:10,0:10:30.10:0,30,383 0/0:11,0:11:27.07:0,27,331 0/0:9,0:9:21.07:0,21,284 0/1:5,11:16:99:315,0,120 0/1:4,5:9:99:133,0,129 0/0:18,0:18:48.16:0,48,624 0/1:5,4:9:99:119,0,107 0/0:13,0:13:30.10:0,30,416 0/0:6,0:6:18.06:0,18,246 0/0:9,0:9:24.08:0,24,318 0/0:9,0:9:24.07:0,24,309 0/0:6,0:6:15.04:0,15,191 0/0:7,0:7:21.06:0,21,260 0/0:8,0:8:21.07:0,21,276 0/0:10,0:10:27.09:0,27,352 0/0:6,0:6:15.05:0,15,200 0/0:8,0:8:18.06:0,18,239 0/0:7,0:7:18.06:0,18,241 0/0:14,0:14:42.14:0,42,543 0/0:5,0:5:12.04:0,12,153 0/0:12,0:12:30.10:0,30,388 0/1:9,7:16:99:157,0,273 0/0:8,0:8:24.08:0,24,307 0/1:7,4:11:99:119,0,234 0/0:10,0:10:27.08:0,27,345 0/0:8,0:8:21.07:0,21,278 0/0:14,0:14:39.13:0,39,509 1 205814485 . G A 38661.17 . AC=21;AF=0.250;AN=84;BaseQRankSum=7.692;DP=5283;DS;Dels=0.00;FS=5.655;HRun=1;HaplotypeScore=2.9861;InbreedingCoeff=0.1746;MQ=59.25;MQ0=0;MQRankSum=1.918;QD=17.92;ReadPosRankSum=-1.707 GT:AD:DP:GQ:PL 0/0:97,0:97:99:0,271,3149 0/0:102,1:103:99:0,266,3375 0/1:46,45:91:99:1227,0,1229 0/1:103,88:191:99:2396,0,2975 0/0:191,0:191:99:0,521,6556 0/1:66,57:123:99:1659,0,1851 1/1:0,109:109:99:3741,298,0 0/0:150,0:150:99:0,388,4925 0/0:106,0:108:99:0,295,3474 0/0:76,0:76:99:0,208,2466 0/0:94,0:94:99:0,253,2991 1/1:0,86:86:99:2825,232,0 0/1:44,39:83:99:1136,0,1261 0/1:42,60:102:99:1748,0,1156 0/1:131,119:250:99:2971,0,3405 0/0:95,0:95:99:0,280,3219 1/1:0,94:94:99:3182,262,0 0/1:52,46:98:99:1282,0,1430 0/1:102,99:201:99:2681,0,2841 0/0:227,0:227:99:0,590,7067 0/0:207,0:207:99:0,545,6543 0/0:131,0:131:99:0,358,4242 1/1:0,188:188:99:6189,491,0 0/0:110,0:110:99:0,289,3660 0/1:69,61:130:99:1676,0,1986 0/0:134,0:134:99:0,343,4390 0/0:84,0:84:99:0,229,2697 0/0:92,0:93:99:0,262,2986 0/0:91,0:91:99:0,232,2756 0/0:101,0:101:99:0,271,3173 0/0:134,0:134:99:0,370,4382 0/0:173,0:173:99:0,460,5507 0/0:128,0:128:99:0,331,3978 0/1:51,39:90:99:1106,0,1420 0/0:82,0:82:99:0,241,2757 0/1:55,60:116:99:1597,0,1483 0/0:217,0:217:99:0,554,6631 0/0:108,0:108:99:0,295,3407 0/0:89,0:89:99:0,253,2966 0/1:45,61:106:99:1853,0,1088 0/0:103,0:103:99:0,262,3105 0/1:51,48:99:99:1392,0,1290 1 205814497 . T C 161258.02 . AC=82;AF=0.976;AN=84;BaseQRankSum=-1.602;DP=5099;DS;Dels=0.00;FS=2.849;HRun=0;HaplotypeScore=2.3213;InbreedingCoeff=-0.0244;MQ=59.24;MQ0=0;MQRankSum=1.627;QD=31.63;ReadPosRankSum=-0.145 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2956,253,0 1/1:0,95:95:99:3047,265,0 1/1:0,81:81:99:2625,229,0 1/1:0,194:194:99:6745,536,0 1/1:0,204:204:99:7123,560,0 1/1:2,121:123:99:4110,283,0 1/1:0,106:106:99:3705,289,0 1/1:0,142:142:99:4879,385,0 1/1:0,109:109:99:3429,295,0 1/1:0,68:68:99:2185,193,0 0/1:42,46:89:99:1228,0,1120 1/1:0,87:87:99:2797,241,0 1/1:0,81:81:99:2603,235,0 1/1:0,92:92:99:2963,256,0 1/1:0,234:234:99:7310,626,0 1/1:0,97:97:99:3158,274,0 1/1:0,84:84:99:2682,235,0 0/1:44,44:88:99:1163,0,1240 1/1:0,193:196:99:6135,538,0 1/1:0,222:223:99:7042,599,0 1/1:0,200:200:99:5928,502,0 1/1:0,137:137:99:4323,376,0 1/1:0,192:192:99:6483,500,0 1/1:0,99:99:99:3351,265,0 1/1:0,134:134:99:4600,361,0 1/1:0,138:138:99:4536,352,0 1/1:0,80:80:99:2631,229,0 1/1:0,95:96:99:2997,262,0 1/1:0,89:89:99:2688,229,0 1/1:0,85:85:99:2676,232,0 1/1:0,117:117:99:3841,337,0 1/1:0,157:158:99:5042,436,0 1/1:0,121:121:99:3747,328,0 1/1:0,87:87:99:2830,253,0 1/1:0,82:82:99:2731,235,0 1/1:1,103:104:99:3242,251,0 1/1:0,208:209:99:6185,532,0 1/1:0,107:108:99:3569,307,0 1/1:0,85:85:99:2786,247,0 1/1:0,104:104:99:3340,289,0 1/1:0,90:90:99:2819,241,0 1/1:0,95:96:99:3027,268,0 1 205817018 . T C 2343.57 . AC=8;AF=0.095;AN=84;BaseQRankSum=3.747;DP=2071;Dels=0.00;FS=6.516;HRun=0;HaplotypeScore=0.2389;InbreedingCoeff=-0.1053;MQ=21.78;MQ0=910;MQRankSum=8.657;QD=6.22;ReadPosRankSum=-0.488 GT:AD:DP:GQ:PL 0/0:33,0:33:57.14:0,57,624 0/0:37,0:37:63.17:0,63,693 0/0:36,0:36:60.15:0,60,654 0/0:84,0:84:99:0,147,1642 0/0:71,0:71:99:0,129,1447 0/0:74,0:74:99:0,111,1234 0/0:66,0:66:93.23:0,93,1036 0/0:80,0:80:99:0,138,1531 0/1:22,17:39:99:261,0,233 0/1:25,20:45:99:435,0,246 0/0:46,0:46:90.22:0,90,980 0/0:31,0:31:48.11:0,48,523 0/0:45,0:45:51.13:0,51,554 0/0:37,0:37:72.20:0,72,805 0/0:138,1:139:99:0,208,2306 0/1:19,6:25:99:113,0,171 0/0:45,0:45:69.18:0,69,754 0/0:35,0:35:87.23:0,87,962 0/1:38,21:59:99:315,0,713 0/1:43,23:66:99:318,0,712 0/0:40,0:40:72.21:0,72,822 0/1:33,21:54:99:390,0,377 0/0:103,0:103:99:0,132,1475 0/0:46,0:46:75.20:0,75,830 0/0:72,0:72:99:0,123,1368 0/0:52,0:52:66.16:0,66,713 0/0:27,0:27:33.09:0,33,366 0/0:47,0:47:60.16:0,60,667 0/0:33,0:33:36.09:0,36,394 0/0:40,0:40:60.15:0,60,650 0/0:35,0:35:63.17:0,63,698 0/0:55,0:56:87.20:0,87,936 0/0:46,0:46:66.18:0,66,732 0/0:32,0:32:57.15:0,57,635 0/0:32,0:32:48.13:0,48,535 0/0:46,0:46:75.20:0,75,828 0/1:23,23:47:99:448,0,252 0/0:35,0:35:45.12:0,45,494 0/1:27,15:42:99:185,0,448 0/0:44,0:44:69.19:0,69,766 0/0:21,0:21:36.10:0,36,404 0/0:28,0:28:36.09:0,36,391 1 205887981 . T C 38577.06 . AC=11;AF=0.131;AN=84;BaseQRankSum=16.206;DP=9054;DS;Dels=0.00;FS=5.470;HRun=0;HaplotypeScore=4.3699;InbreedingCoeff=0.0585;MQ=59.48;MQ0=0;MQRankSum=0.847;QD=16.88;ReadPosRankSum=-2.840 GT:AD:DP:GQ:PL 0/0:198,0:198:99:0,569,6745 0/0:188,0:189:99:0,542,6463 0/0:152,0:152:99:0,433,5105 0/1:113,137:250:99:4156,0,3126 0/0:247,0:247:99:0,725,8703 0/0:250,0:250:99:0,716,8848 0/0:250,0:250:99:0,719,8769 0/1:126,123:249:99:3795,0,3525 0/1:109,107:216:99:2977,0,3002 0/0:182,0:182:99:0,536,6235 0/1:101,113:214:99:3235,0,2869 0/0:191,1:192:99:0,560,6603 0/1:85,65:151:99:1695,0,2441 0/0:224,0:224:99:0,629,7553 0/0:248,1:250:99:0,710,8262 0/0:166,1:167:99:0,478,5650 0/0:205,0:205:99:0,599,7069 0/0:204,0:205:99:0,593,7061 0/0:250,0:250:99:0,704,8378 0/0:245,0:249:99:0,686,8178 0/1:121,127:249:99:3659,0,3375 0/0:222,0:222:99:0,632,7488 0/1:134,112:246:99:3526,0,3924 0/0:250,0:250:99:0,707,8656 0/0:250,0:250:99:0,707,8604 0/0:249,1:250:99:0,710,8599 0/0:152,0:153:99:0,430,5112 0/0:208,0:208:99:0,614,7228 0/0:155,0:155:99:0,439,5240 0/0:171,0:171:99:0,484,5803 0/0:192,0:192:99:0,569,6677 1/1:0,250:250:99:8584,704,0 0/1:126,124:250:99:3543,0,3396 0/0:198,0:198:99:0,563,6712 0/0:194,0:194:99:0,548,6558 0/0:220,0:220:99:0,632,7564 0/0:250,0:250:99:0,713,8494 0/0:221,0:221:99:0,635,7477 0/1:95,115:210:99:3407,0,2687 0/0:237,1:241:99:0,651,8097 0/0:182,0:182:99:0,527,6251 0/0:201,0:201:99:0,581,6914 1 205889329 . C T 10745.96 . 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G A 1247.55 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.783;DP=5005;DS;Dels=0.00;FS=3.477;HRun=1;HaplotypeScore=2.3662;InbreedingCoeff=-0.0120;MQ=59.48;MQ0=0;MQRankSum=0.704;QD=11.34;ReadPosRankSum=1.939 GT:AD:DP:GQ:PL 0/0:122,0:122:99:0,331,4162 0/0:102,0:102:99:0,259,3233 0/0:85,0:85:99:0,232,2933 0/0:173,0:173:99:0,457,5941 0/0:177,0:177:99:0,448,6032 0/0:124,0:124:99:0,325,4338 0/1:65,45:110:99:1294,0,1849 0/0:132,0:132:99:0,325,4360 0/0:91,0:91:99:0,247,3144 0/0:103,0:103:99:0,277,3460 0/0:76,0:76:99:0,211,2657 0/0:87,0:87:99:0,241,3030 0/0:71,0:71:99:0,205,2577 0/0:111,0:111:99:0,295,3699 0/0:246,0:247:99:0,674,8271 0/0:84,0:84:99:0,229,2836 0/0:102,0:102:99:0,283,3543 0/0:114,0:114:99:0,310,3870 0/0:145,0:146:99:0,385,4812 0/0:184,0:184:99:0,478,6104 0/0:182,0:183:99:0,493,6023 0/0:119,0:119:99:0,283,3659 0/0:202,0:202:99:0,524,6939 0/0:119,0:119:99:0,313,4162 0/0:143,0:143:99:0,376,5048 0/0:123,0:123:99:0,310,4132 0/0:77,0:77:99:0,199,2513 0/0:93,0:93:99:0,256,3206 0/0:90,0:90:99:0,232,2935 0/0:100,0:100:99:0,262,3271 0/0:88,0:88:99:0,232,2908 0/0:200,0:200:99:0,482,6225 0/0:115,0:115:99:0,298,3764 0/0:86,0:86:99:0,250,3117 0/0:80,0:80:99:0,229,2850 0/0:112,0:112:99:0,301,3783 0/0:161,0:161:99:0,436,5357 0/0:100,0:100:99:0,262,3293 0/0:98,0:98:99:0,265,3320 0/0:84,0:84:99:0,232,2924 0/0:81,0:81:99:0,223,2769 0/0:110,0:110:99:0,289,3657 1 205899025 . C A 449 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.563;DP=1280;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.0291;InbreedingCoeff=-0.0121;MQ=58.89;MQ0=0;MQRankSum=0.333;QD=14.97;ReadPosRankSum=1.176 GT:AD:DP:GQ:PL 0/0:34,0:34:96.28:0,96,1118 0/0:19,0:19:51.12:0,51,578 0/0:29,0:29:84.23:0,84,979 0/0:51,0:51:99:0,138,1724 0/0:34,0:34:90.28:0,90,1135 0/0:48,0:48:99:0,129,1578 0/0:38,0:38:96.27:0,96,1200 0/0:33,0:33:81.25:0,81,1029 0/0:20,1:21:35.47:0,35,640 0/0:19,0:19:48.12:0,48,551 0/0:25,0:25:75.22:0,75,880 0/0:27,0:27:78.20:0,78,866 0/0:22,0:22:63.17:0,63,723 0/0:23,0:23:60.17:0,60,705 0/0:70,0:70:99:0,180,2093 0/0:21,0:21:60.14:0,60,677 0/0:15,1:16:45.13:0,45,522 0/0:24,0:24:63.17:0,63,753 0/0:48,0:48:99:0,126,1468 0/0:49,0:49:99:0,141,1631 0/0:43,0:43:99:0,114,1324 0/0:31,0:31:81.18:0,81,898 0/0:44,0:44:99:0,123,1565 0/0:26,0:26:66.21:0,66,855 0/0:37,0:37:99:0,105,1277 0/0:27,0:27:72.17:0,72,863 0/0:21,0:21:48.14:0,48,592 0/0:31,0:31:84.23:0,84,961 0/0:22,0:22:66.18:0,66,749 0/0:28,0:28:72.18:0,72,829 0/0:24,0:24:72.19:0,72,827 0/0:39,0:39:99:0,108,1284 0/1:12,18:30:99:495,0,324 0/0:19,0:19:48.11:0,48,542 0/0:25,0:25:75.21:0,75,865 0/0:21,0:21:60.16:0,60,669 0/0:36,0:36:96.27:0,96,1125 0/0:38,0:38:99:0,102,1211 0/0:24,0:24:72.20:0,72,831 0/0:28,1:29:78.23:0,78,924 0/0:18,0:18:54.16:0,54,628 0/0:16,0:16:48.12:0,48,557 1 205901000 . G A 10565.04 . AC=15;AF=0.179;AN=84;BaseQRankSum=13.471;DP=1650;Dels=0.00;FS=6.378;HRun=0;HaplotypeScore=0.9394;InbreedingCoeff=-0.0551;MQ=57.65;MQ0=0;MQRankSum=2.569;QD=16.69;ReadPosRankSum=5.860 GT:AD:DP:GQ:PL 0/0:33,0:33:99:0,99,1088 0/0:25,0:25:75.17:0,75,821 0/0:29,0:29:81.22:0,81,936 0/1:27,40:67:99:1162,0,788 0/0:62,0:62:99:0,165,2010 0/1:29,31:60:99:983,0,731 0/1:22,21:43:99:581,0,692 0/1:24,28:52:99:840,0,680 0/1:19,19:38:99:569,0,473 0/0:25,0:25:72.17:0,72,788 0/1:13,14:27:99:388,0,325 0/0:30,0:30:87.22:0,87,953 0/1:10,14:24:99:443,0,254 0/0:42,0:42:99:0,123,1375 0/0:100,0:100:99:0,280,3112 0/0:29,0:29:81.21:0,81,896 0/0:26,0:26:72.18:0,72,812 0/0:36,0:36:96.26:0,96,1092 0/0:34,0:34:90.24:0,90,1011 0/0:54,0:54:99:0,141,1564 0/1:28,20:48:99:444,0,802 0/0:30,0:30:78.20:0,78,900 0/1:43,31:74:99:892,0,1209 0/0:42,0:42:99:0,120,1462 0/0:47,0:47:99:0,126,1558 0/0:34,0:34:90.24:0,90,1104 0/0:24,0:24:69.17:0,69,774 0/0:41,0:41:99:0,114,1255 0/0:25,0:25:69.16:0,69,753 0/0:29,0:29:81.22:0,81,926 0/0:34,0:34:93.25:0,93,1041 1/1:0,56:56:99:1922,156,0 0/1:17,22:39:99:652,0,444 0/0:31,0:31:87.20:0,87,966 0/0:31,0:31:90.24:0,90,1016 0/0:34,0:34:93.21:0,93,1031 0/0:31,0:31:90.22:0,90,977 0/0:34,0:34:99:0,102,1114 0/1:21,18:39:99:460,0,570 0/1:16,16:32:99:501,0,376 0/0:25,0:25:75.19:0,75,825 0/1:11,23:34:99:726,0,241 1 205901026 . C T 600.87 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.410;DP=1225;Dels=0.00;FS=6.900;HRun=0;HaplotypeScore=0.5761;InbreedingCoeff=-0.0281;MQ=58.52;MQ0=0;MQRankSum=-0.086;QD=12.78;ReadPosRankSum=1.423 GT:AD:DP:GQ:PL 0/0:33,0:33:78.19:0,78,881 0/0:23,0:23:57.15:0,57,658 0/0:23,0:23:57.15:0,57,663 0/0:41,0:41:99:0,111,1258 0/0:38,0:39:99:0,105,1167 0/0:40,0:40:99:0,102,1203 0/0:35,0:35:90.21:0,90,1031 0/0:34,0:34:84.21:0,84,961 0/1:14,13:27:99:341,0,296 0/0:19,0:19:42.12:0,42,493 0/1:9,11:20:99:323,0,186 0/0:27,0:27:69.19:0,69,800 0/0:19,0:19:48.11:0,48,521 0/0:28,0:28:81.21:0,81,922 0/0:72,0:72:99:0,171,1923 0/0:24,0:24:57.14:0,57,635 0/0:21,0:21:51.12:0,51,583 0/0:19,0:19:48.14:0,48,563 0/0:28,0:28:66.12:0,66,722 0/0:41,0:41:99:0,102,1198 0/0:33,0:33:81.21:0,81,909 0/0:30,0:30:78.18:0,78,862 0/0:50,0:50:99:0,123,1496 0/0:29,0:29:69.12:0,69,780 0/0:36,0:36:87.22:0,87,1024 0/0:26,0:26:69.14:0,69,780 0/0:23,0:23:60.13:0,60,658 0/0:28,0:28:78.19:0,78,855 0/0:14,0:15:39.09:0,39,442 0/0:31,0:31:78.15:0,78,861 0/0:22,0:22:60.15:0,60,676 0/0:41,0:41:99:0,105,1169 0/0:24,0:24:57.14:0,57,651 0/0:22,0:23:51.14:0,51,577 0/0:24,0:24:63.15:0,63,714 0/0:25,0:25:69.15:0,69,781 0/0:27,2:30:3.84:0,4,743 0/0:19,0:19:42.08:0,42,452 0/0:37,0:37:87.23:0,87,994 0/0:23,0:24:57.14:0,57,627 0/0:15,0:15:36.10:0,36,416 0/0:27,0:27:66.18:0,66,759 1 206651107 . G A 1469.75 . AC=18;AF=0.214;AN=84;BaseQRankSum=3.901;DP=260;Dels=0.00;FS=0.575;HRun=0;HaplotypeScore=0.2097;InbreedingCoeff=-0.0567;MQ=58.65;MQ0=0;MQRankSum=0.674;QD=15.47;ReadPosRankSum=-0.877 GT:AD:DP:GQ:PL 0/1:3,1:4:26.23:26,0,62 0/1:6,4:10:96.81:97,0,126 0/0:6,0:6:15.04:0,15,168 0/1:2,10:12:36.46:309,0,36 0/1:1,4:5:24.96:128,0,25 0/0:6,0:6:15.04:0,15,196 0/0:1,0:1:3.01:0,3,37 0/0:11,0:11:24.07:0,24,289 0/1:2,4:6:51.82:105,0,52 0/1:1,1:2:31.78:32,0,33 0/0:2,0:2:6.01:0,6,63 0/1:4,4:8:99:99,0,115 0/0:4,0:4:12.03:0,12,133 1/1:0,6:6:18.06:226,18,0 0/0:12,0:12:36.10:0,36,406 0/0:3,0:3:9.02:0,9,96 0/0:4,0:4:12.01:0,12,123 0/0:10,0:10:27.08:0,27,335 0/0:7,0:7:18.06:0,18,223 0/0:9,0:9:24.07:0,24,303 0/0:12,0:12:24.08:0,24,321 0/0:4,0:4:12.03:0,12,128 0/1:6,2:8:50.17:50,0,169 0/0:8,0:8:24.07:0,24,280 0/0:10,0:10:27.08:0,27,337 0/0:3,0:3:9.03:0,9,109 0/1:1,3:4:25.76:98,0,26 1/1:0,2:2:6.02:71,6,0 0/0:6,0:6:15.04:0,15,165 0/1:2,3:5:49.11:59,0,49 0/1:1,4:5:16.51:132,0,17 0/0:11,0:11:27.07:0,27,318 0/1:7,2:9:45.42:45,0,182 0/0:3,0:3:9.02:0,9,98 0/0:4,0:4:12.03:0,12,134 0/0:8,0:8:21.06:0,21,247 0/0:8,0:8:21.06:0,21,245 0/0:3,0:3:9.02:0,9,100 0/1:2,5:7:44.07:131,0,44 0/1:1,1:2:30.96:31,0,33 0/0:4,0:4:6.02:0,6,83 0/0:6,0:6:18.05:0,18,207 1 206651143 . G A 18.14 . 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G A 634.19 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.004;DP=2777;Dels=0.00;FS=13.348;HRun=0;HaplotypeScore=2.0973;InbreedingCoeff=-0.0120;MQ=59.15;MQ0=0;MQRankSum=-0.256;QD=14.75;ReadPosRankSum=-0.543 GT:AD:DP:GQ:PL 0/0:40,0:41:99:0,117,1344 0/0:43,0:45:99:0,126,1455 0/0:41,0:41:99:0,105,1221 0/0:138,0:138:99:0,370,4754 0/0:108,1:109:99:0,304,3870 0/0:94,0:94:99:0,259,3228 0/0:61,0:61:99:0,169,2130 0/0:84,0:84:99:0,229,2939 0/0:41,0:42:99:0,105,1238 0/0:39,1:40:99:0,105,1219 0/0:51,1:52:99:0,120,1700 0/0:50,0:50:99:0,132,1604 0/0:36,0:36:99:0,102,1162 0/0:40,0:40:99:0,108,1276 0/0:182,0:184:99:0,472,5546 0/1:17,25:43:99:680,0,461 0/0:40,0:40:99:0,108,1283 0/0:30,0:30:90.25:0,90,1043 0/0:109,0:110:99:0,292,3385 0/0:113,0:113:99:0,298,3542 0/0:98,0:100:99:0,259,3029 0/0:69,0:69:99:0,184,2233 0/0:152,0:152:99:0,412,5307 0/0:57,0:58:99:0,141,1857 0/0:91,0:91:99:0,250,3174 0/0:68,0:68:99:0,190,2379 0/0:36,0:36:96.24:0,96,1087 0/0:38,0:38:99:0,108,1265 0/0:46,0:46:99:0,117,1432 0/0:43,0:43:99:0,111,1330 0/0:46,0:46:99:0,129,1564 0/0:93,0:93:99:0,244,2889 0/0:70,0:70:99:0,202,2348 0/0:40,0:40:99:0,117,1336 0/0:59,0:59:99:0,150,1805 0/0:43,0:43:99:0,120,1396 0/0:101,0:102:99:0,268,3227 0/0:45,0:45:99:0,117,1413 0/0:69,0:69:99:0,190,2221 0/0:34,0:34:99:0,99,1150 0/0:36,0:36:99:0,105,1215 0/0:46,0:46:99:0,135,1573 1 206711610 . G A 2214.53 . AC=1;AF=0.012;AN=84;BaseQRankSum=-11.828;DP=5273;DS;Dels=0.00;FS=6.120;HRun=1;HaplotypeScore=3.0791;InbreedingCoeff=-0.0120;MQ=59.39;MQ0=0;MQRankSum=0.865;QD=16.16;ReadPosRankSum=0.235 GT:AD:DP:GQ:PL 0/0:121,0:121:99:0,346,4306 0/0:120,0:120:99:0,328,4141 0/0:95,0:95:99:0,256,3300 0/0:209,0:209:99:0,560,7463 0/0:184,0:184:99:0,500,6674 0/0:127,0:127:99:0,346,4641 0/0:145,0:146:99:0,388,5268 0/0:152,0:152:99:0,412,5482 0/0:100,0:100:99:0,277,3539 0/0:104,0:104:99:0,286,3596 0/0:74,0:74:99:0,217,2681 0/0:84,0:84:99:0,229,2892 0/0:77,0:77:99:0,217,2724 0/0:80,0:80:99:0,226,2893 0/0:238,0:239:99:0,641,8087 0/0:112,0:112:99:0,319,4047 0/0:111,0:111:99:0,313,3964 0/0:98,0:98:99:0,277,3476 0/0:179,0:179:99:0,485,6181 0/0:197,0:197:99:0,518,6645 0/0:164,0:164:99:0,439,5657 0/1:58,79:137:99:2261,0,1571 0/0:219,0:219:99:0,605,8139 0/0:118,0:118:99:0,316,4210 0/0:145,0:145:99:0,388,5249 0/0:142,0:142:99:0,367,4914 0/0:92,0:92:99:0,256,3221 0/0:107,0:107:99:0,301,3771 0/0:108,0:108:99:0,292,3699 0/0:94,0:94:99:0,262,3321 0/0:95,1:96:99:0,271,3455 0/0:181,0:182:99:0,469,6032 0/0:111,0:111:99:0,307,3859 0/0:85,0:85:99:0,241,3042 0/0:90,0:90:99:0,256,3235 0/0:108,0:108:99:0,304,3834 0/0:176,0:177:99:0,479,6057 0/0:124,0:124:99:0,343,4342 0/0:83,0:83:99:0,241,3031 0/0:92,0:92:99:0,271,3357 0/0:75,0:75:99:0,208,2654 0/0:115,0:115:99:0,325,4121 1 206772388 . T C 494.56 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.061;DP=2317;Dels=0.00;FS=9.635;HRun=1;HaplotypeScore=0.9491;InbreedingCoeff=-0.0120;MQ=59.22;MQ0=0;MQRankSum=0.258;QD=12.06;ReadPosRankSum=-0.339 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,108,1327 0/0:52,0:52:99:0,135,1694 0/0:38,0:38:99:0,99,1236 0/0:77,0:77:99:0,193,2426 0/0:61,0:61:99:0,172,2131 0/0:84,0:84:99:0,202,2683 0/0:75,0:75:99:0,178,2312 0/0:56,0:56:99:0,144,1864 0/0:49,0:49:99:0,132,1643 0/1:21,19:41:99:541,0,601 0/0:36,0:36:93.28:0,93,1151 0/0:51,0:51:99:0,123,1572 0/0:38,0:38:99:0,111,1355 0/0:56,0:56:99:0,135,1725 0/0:163,0:163:99:0,367,4689 0/0:38,0:38:99:0,105,1276 0/0:54,0:54:99:0,147,1844 0/0:45,0:45:99:0,123,1523 0/0:75,0:75:99:0,187,2352 0/0:85,0:85:99:0,211,2681 0/0:73,0:73:99:0,190,2377 0/0:43,0:43:99:0,114,1431 0/0:73,0:74:99:0,193,2453 0/0:76,0:76:99:0,181,2340 0/0:80,0:80:99:0,199,2549 0/0:61,0:61:99:0,160,2034 0/0:36,0:36:99:0,99,1218 0/0:63,0:63:99:0,169,2078 0/0:40,0:40:99:0,102,1287 0/0:50,0:50:99:0,123,1567 0/0:36,0:36:99:0,102,1261 0/0:46,0:46:99:0,120,1493 0/0:31,0:31:90.27:0,90,1086 0/0:37,0:37:99:0,108,1332 0/0:41,0:41:99:0,108,1362 0/0:47,0:47:99:0,123,1528 0/0:53,0:53:99:0,138,1727 0/0:46,0:46:99:0,117,1471 0/0:35,0:36:87.26:0,87,1083 0/0:47,0:47:99:0,123,1538 0/0:36,0:36:96.30:0,96,1200 0/0:50,0:51:99:0,129,1631 1 206902437 . A G 762.54 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.848;DP=2058;Dels=0.00;FS=4.333;HRun=1;HaplotypeScore=1.0785;InbreedingCoeff=-0.0120;MQ=57.93;MQ0=0;MQRankSum=0.522;QD=16.58;ReadPosRankSum=-0.298 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,111,1362 0/0:43,0:43:99:0,117,1471 0/0:26,0:26:75.23:0,75,925 0/0:68,0:68:99:0,184,2368 0/0:52,0:52:99:0,153,1926 0/0:52,0:52:99:0,141,1846 0/0:52,0:52:99:0,132,1754 0/0:38,0:38:99:0,108,1391 0/0:42,0:42:99:0,117,1460 0/0:44,0:44:99:0,123,1516 0/0:45,0:45:99:0,120,1518 0/0:37,0:38:99:0,105,1308 0/0:26,0:26:75.23:0,75,932 0/0:36,0:36:99:0,105,1297 0/0:147,0:147:99:0,382,4853 0/0:46,0:46:99:0,123,1541 0/0:33,0:33:90.28:0,90,1127 0/0:35,0:35:99:0,105,1303 0/0:79,1:80:99:0,199,2705 0/0:103,0:103:99:0,265,3296 0/0:82,0:82:99:0,217,2757 0/0:58,0:58:99:0,159,1941 0/0:65,0:65:99:0,184,2377 0/0:45,0:45:99:0,117,1539 0/0:51,0:51:99:0,138,1771 0/0:42,0:42:99:0,114,1493 0/0:30,0:30:87.27:0,87,1088 0/0:37,0:37:99:0,102,1276 0/0:37,0:37:99:0,108,1328 0/0:38,0:38:99:0,105,1317 0/0:31,0:31:90.27:0,90,1116 0/0:52,1:53:99:0,115,1814 0/1:19,27:46:99:809,0,553 0/0:29,0:29:81.26:0,81,1028 0/0:40,0:40:99:0,108,1351 0/0:56,0:56:99:0,141,1823 0/0:82,0:82:99:0,208,2642 0/0:34,0:34:93.29:0,93,1163 0/0:40,0:40:99:0,117,1432 0/0:43,0:43:99:0,111,1405 0/0:33,0:33:93.28:0,93,1163 0/0:40,0:40:99:0,114,1436 1 207078467 . G A 1176.26 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.645;DP=2610;Dels=0.00;FS=3.992;HRun=0;HaplotypeScore=1.1385;InbreedingCoeff=-0.0244;MQ=59.20;MQ0=0;MQRankSum=0.401;QD=12.38;ReadPosRankSum=-0.885 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,144,1791 0/1:31,21:52:99:541,0,912 0/1:18,25:43:99:698,0,544 0/0:92,0:92:99:0,268,3544 0/0:92,0:92:99:0,256,3436 0/0:88,0:88:99:0,250,3324 0/0:57,0:57:99:0,169,2212 0/0:63,0:63:99:0,178,2368 0/0:51,0:51:99:0,147,1813 0/0:40,0:40:99:0,114,1372 0/0:40,0:40:99:0,111,1422 0/0:42,0:42:99:0,120,1502 0/0:47,0:47:99:0,138,1730 0/0:47,0:47:99:0,132,1682 0/0:189,1:191:99:0,494,6501 0/0:48,0:48:99:0,141,1743 0/0:55,0:55:99:0,156,1960 0/0:40,1:42:86.94:0,87,1425 0/0:74,0:74:99:0,202,2516 0/0:73,0:73:99:0,211,2639 0/0:89,0:89:99:0,247,3076 0/0:50,0:50:99:0,144,1805 0/0:117,0:117:99:0,331,4437 0/0:63,0:63:99:0,184,2381 0/0:87,0:87:99:0,232,3133 0/0:63,0:63:99:0,172,2284 0/0:39,0:39:99:0,108,1355 0/0:50,0:50:99:0,144,1808 0/0:42,0:43:99:0,123,1505 0/0:64,0:64:99:0,181,2274 0/0:51,0:51:99:0,147,1851 0/0:63,0:63:99:0,175,2221 0/0:63,0:63:99:0,172,2145 0/0:57,0:57:99:0,163,2034 0/0:51,0:51:99:0,144,1800 0/0:54,0:54:99:0,153,1906 0/0:65,0:65:99:0,183,2255 0/0:64,0:64:99:0,187,2334 0/0:31,0:31:93.30:0,93,1173 0/0:51,0:51:99:0,150,1876 0/0:54,0:54:99:0,153,1928 0/0:56,0:56:99:0,156,1934 1 207198289 . GCTCAGACTC G 215.27 . AC=7;AF=0.083;AN=84;BaseQRankSum=-5.201;DP=2463;FS=1448.216;HRun=0;HaplotypeScore=420.9951;InbreedingCoeff=-0.0985;MQ=59.24;MQ0=0;MQRankSum=-1.295;QD=0.59;ReadPosRankSum=-17.329 GT:AD:DP:GQ:PL 0/0:53,0:53:44.74:0,45,5597 0/0:40,0:40:25.73:0,26,4013 0/0:37,0:37:41:0,41,4142 0/0:130,0:130:52.48:0,52,13242 0/0:128,0:128:99:0,177,13021 0/0:94,0:94:68.16:0,68,9391 0/0:58,0:56:99:0,108,6172 0/0:73,0:69:99:0,127,8077 0/0:49,0:49:68.78:0,69,4782 0/0:41,0:41:99:0,105,4793 0/0:37,0:37:61.33:0,61,3504 0/0:34,0:34:75.20:0,75,3356 0/0:35,0:35:84.28:0,84,3672 0/0:36,0:36:20.10:0,20,2843 0/1:113,0:113:99:116,0,9498 0/1:44,0:44:50.12:50,0,4225 0/0:43,0:43:48.16:0,48,4241 0/1:25,0:25:37.18:37,0,1956 0/0:65,0:65:5.48:0,5,5520 0/0:82,28:110:99:0,170,9640 0/1:77,0:77:48.04:48,0,7108 0/0:68,0:68:53.03:0,53,5786 0/0:138,0:138:99:0,228,14419 0/0:71,0:68:99:0,101,7560 0/0:99,0:92:99:0,133,10417 0/0:97,0:94:99:0,132,8873 0/1:31,0:31:28.43:28,0,2733 0/0:37,0:36:57.37:0,57,3701 0/0:34,0:34:75.25:0,75,3081 0/1:41,0:41:19.21:19,0,4207 0/0:33,0:33:3.50:0,3,2993 0/0:74,0:74:32.22:0,32,6441 0/0:55,0:55:63.80:0,64,5423 0/0:28,0:28:44.27:0,44,2820 0/0:53,0:53:95.50:0,95,5392 0/0:50,0:50:56.04:0,56,4823 0/0:70,0:70:99:0,101,7226 0/1:33,0:33:38.22:38,0,2977 0/0:23,0:23:40.15:0,40,2188 0/0:37,0:37:36.52:0,37,3760 0/0:22,0:22:57.19:0,57,2616 0/0:47,0:47:42.61:0,43,4131 1 207198290 . C G 192.21 . AC=5;AF=0.060;AN=84;BaseQRankSum=-12.602;DP=2463;Dels=0.01;FS=1395.897;HRun=2;HaplotypeScore=4.9832;InbreedingCoeff=-0.0835;MQ=59.24;MQ0=0;MQRankSum=-1.809;QD=0.66;ReadPosRankSum=-17.190 GT:AD:DP:GQ:PL 0/0:40,13:53:31.01:0,31,1389 0/0:29,11:40:19.81:0,20,1004 0/0:31,6:37:27.35:0,27,1013 0/0:97,32:130:99:0,157,3376 0/0:100,28:128:99:0,171,3706 0/0:72,21:94:99:0,132,2539 0/0:47,11:58:99:0,103,1727 0/0:60,13:73:99:0,144,2243 0/0:36,13:49:52.03:0,52,1231 0/0:35,6:41:80.63:0,81,1219 0/0:28,9:37:53.65:0,54,958 0/0:28,6:34:72.21:0,72,882 0/0:28,7:35:84.26:0,84,1045 0/0:24,12:36:7.26:0,7,745 0/1:71,40:112:99:115,0,2159 0/1:34,10:44:77.39:77,0,1117 0/0:34,9:43:39.31:0,39,1131 0/1:17,8:25:43.51:44,0,589 0/0:48,17:65:34.95:0,35,1449 0/0:79,3:82:99:0,214,2626 0/1:55,21:77:36.04:36,0,1703 0/0:54,14:68:69.39:0,69,1560 0/0:108,30:138:99:0,243,4045 0/0:56,15:71:89.64:0,90,2054 0/0:78,21:99:99:0,115,2729 0/0:71,26:97:99:0,159,2452 0/0:22,9:31:7.32:0,7,668 0/0:29,8:37:51.14:0,51,1005 0/0:26,8:34:75.23:0,75,936 0/0:32,9:41:2.66:1,0,972 0/1:25,8:33:13.36:13,0,823 0/0:50,24:74:77.54:0,78,1662 0/0:40,15:55:48.97:0,49,1294 0/0:23,5:28:65.42:0,65,803 0/0:44,9:53:87.88:0,88,1448 0/0:40,10:50:73.10:0,73,1202 0/0:58,11:70:63.83:0,64,1816 0/0:22,10:33:1.92:3,0,640 0/0:19,4:23:35.48:0,35,635 0/0:30,7:37:24.44:0,24,996 0/0:20,2:22:57.18:0,57,723 0/0:34,13:47:60.17:0,60,1094 1 207236524 . G A 1345.45 . 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C T 17112.50 . 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C A 2413.29 . 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A G 10022.20 . 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C A 56607.07 . AC=70;AF=0.833;AN=84;BaseQRankSum=-22.676;DP=2242;Dels=0.00;FS=66.103;HRun=1;HaplotypeScore=0.4249;InbreedingCoeff=-0.2000;MQ=59.42;MQ0=0;MQRankSum=1.988;QD=25.25;ReadPosRankSum=-0.841 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1208,99,0 1/1:0,45:45:99:1473,120,0 1/1:0,41:41:99:1376,111,0 1/1:0,71:71:99:2411,196,0 1/1:0,57:57:99:2113,169,0 1/1:0,64:64:99:2244,175,0 1/1:0,54:54:99:1898,150,0 1/1:0,52:52:99:1809,144,0 0/1:39,28:67:99:722,0,1152 1/1:0,37:37:99:1267,105,0 0/1:26,22:48:99:583,0,825 1/1:0,47:47:99:1525,123,0 0/1:43,21:64:99:484,0,1303 1/1:0,45:45:99:1505,123,0 1/1:0,140:140:99:4528,370,0 1/1:0,32:32:90.28:1102,90,0 0/1:30,17:47:99:460,0,947 1/1:0,41:41:99:1387,114,0 1/1:0,59:59:99:1829,147,0 0/1:43,25:68:99:694,0,1270 0/1:52,32:84:99:812,0,1466 1/1:0,33:33:96.27:1159,96,0 1/1:0,59:59:99:2057,166,0 0/1:36,25:61:99:745,0,1157 1/1:0,67:68:99:2339,187,0 0/1:35,29:64:99:839,0,1159 1/1:0,32:32:93.29:1138,93,0 1/1:0,50:50:99:1657,135,0 1/1:0,38:38:99:1257,102,0 0/1:30,27:57:99:731,0,914 0/1:28,17:45:99:461,0,888 0/1:53,23:76:99:547,0,1500 1/1:0,40:40:99:1314,105,0 1/1:0,50:50:99:1734,141,0 1/1:0,48:48:99:1646,132,0 1/1:0,47:47:99:1574,126,0 0/1:28,21:49:99:590,0,737 0/1:30,19:49:99:544,0,972 0/1:31,19:50:99:527,0,889 1/1:0,49:49:99:1692,138,0 1/1:0,39:39:99:1317,108,0 1/1:0,39:39:99:1310,108,0 1 207700165 . T C 53.96 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.331;DP=7137;DS;Dels=0.00;FS=22.570;HRun=2;HaplotypeScore=3.3479;InbreedingCoeff=0.4079;MQ=25.86;MQ0=79;MQRankSum=2.749;QD=5.40;ReadPosRankSum=0.967 GT:AD:DP:GQ:PL 0/0:190,0:190:99:0,509,4583 0/0:99,1:100:99:0,261,2389 0/0:92,0:93:99:0,255,2256 0/0:181,0:181:99:0,488,4464 0/0:180,0:180:99:0,509,4655 0/0:230,0:230:99:0,641,5839 0/0:143,5:149:99:0,338,3426 0/0:126,0:126:99:0,327,3059 0/0:98,2:100:99:0,246,2356 0/0:98,0:98:99:0,267,2391 0/0:198,0:198:99:0,536,4845 0/0:218,0:218:99:0,578,5184 0/0:188,0:188:99:0,503,4639 0/0:196,0:197:99:0,536,4792 0/0:249,0:250:99:0,650,6054 0/0:98,0:99:99:0,267,2403 0/0:229,0:229:99:0,629,5682 0/0:201,0:201:99:0,521,4762 0/0:249,0:250:99:0,668,5936 0/0:250,0:250:99:0,674,6316 0/0:249,0:249:99:0,695,6254 0/0:128,2:131:99:0,303,3034 0/0:250,0:250:99:0,692,6324 0/0:227,0:229:99:0,590,5386 0/0:230,0:231:99:0,638,5717 0/0:249,0:249:99:0,668,6176 0/1:1,6:7:15.64:86,0,16 0/0:1,1:2:2.99:0,3,23 0/0:2,1:3:5.98:0,6,47 0/0:220,0:221:99:0,581,5009 0/0:91,0:91:99:0,251,2167 0/0:247,0:250:99:0,669,6381 0/0:239,0:239:99:0,599,5411 0/0:199,0:201:99:0,560,4783 0/0:190,0:190:99:0,509,4485 0/0:186,0:186:99:0,485,4400 0/0:250,0:250:99:0,686,6371 0/0:218,0:218:99:0,557,5137 0/0:213,0:213:99:0,575,5278 0/0:88,3:91:99:0,206,2048 0/0:105,1:106:99:0,245,2491 0/1:0,3:3:1.76:32,3,0 1 207787796 . T C 136.50 . 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A G 4704.46 . 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C T 2361.53 . 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G A 103.90 . 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G A 28878.65 . 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C T 779.02 . 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C T 1118.72 . 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T C 22161.25 . AC=26;AF=0.310;AN=84;BaseQRankSum=-10.693;DP=2620;Dels=0.00;FS=1.816;HRun=1;HaplotypeScore=1.6183;InbreedingCoeff=0.2202;MQ=59.39;MQ0=0;MQRankSum=1.289;QD=17.45;ReadPosRankSum=-3.120 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,132,1591 0/1:18,25:44:99:689,0,427 1/1:0,38:38:99:1211,108,0 0/0:150,0:151:99:0,391,4879 0/1:78,56:134:99:1558,0,2222 0/0:118,0:118:99:0,307,3813 0/1:40,27:68:99:800,0,1159 0/1:49,37:87:99:967,0,1271 0/0:48,0:48:99:0,129,1529 0/0:44,0:45:99:0,111,1354 0/0:31,0:31:90.27:0,90,1088 0/0:39,0:40:99:0,105,1282 0/1:17,21:38:99:540,0,443 0/0:35,0:35:99:0,105,1253 1/1:1,119:121:99:3751,302,0 0/1:24,25:49:99:649,0,714 0/1:30,17:47:99:414,0,915 0/1:16,16:32:99:402,0,484 1/1:0,61:61:99:1720,150,0 0/1:47,44:91:99:1109,0,1325 0/1:33,38:71:99:1021,0,912 1/1:0,63:63:99:1929,174,0 0/0:159,0:159:99:0,436,5346 0/1:45,33:78:99:983,0,1397 0/1:51,40:91:99:1032,0,1348 0/0:82,0:82:99:0,211,2674 0/0:36,0:36:96.29:0,96,1159 0/0:43,0:43:99:0,126,1521 0/0:31,0:31:87.25:0,87,1047 0/0:43,0:43:99:0,120,1440 0/1:19,27:46:99:700,0,560 0/0:84,0:85:99:0,229,2733 0/0:58,0:58:99:0,162,1958 1/1:0,38:38:99:1201,108,0 0/1:22,12:34:99:256,0,616 1/1:0,39:39:99:1230,105,0 0/0:68,0:68:99:0,199,2414 0/0:72,0:72:99:0,208,2477 0/0:45,0:46:99:0,117,1391 0/0:36,0:36:99:0,99,1203 0/0:29,1:30:56.82:0,57,1000 0/0:44,1:45:93.74:0,94,1431 1 209791929 . G T 1481.95 . 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G C 410.33 . 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CTGCCGCA C 1919.74 . 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A G 2186.31 . 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T C 3179.86 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.237;DP=3966;DS;Dels=0.00;FS=10.041;HRun=0;HaplotypeScore=1.6476;InbreedingCoeff=-0.0244;MQ=59.42;MQ0=0;MQRankSum=0.592;QD=10.93;ReadPosRankSum=1.321 GT:AD:DP:GQ:PL 0/0:80,0:80:99:0,223,2722 0/0:85,0:85:99:0,226,2777 0/0:70,0:70:99:0,184,2276 0/0:200,0:200:99:0,557,6867 0/0:167,0:168:99:0,472,5949 0/0:144,0:144:99:0,391,4976 0/0:133,0:133:99:0,370,4661 0/0:132,0:133:99:0,355,4513 0/0:69,0:69:99:0,181,2212 0/0:63,0:63:99:0,178,2139 0/0:68,0:68:99:0,184,2258 0/0:75,0:75:99:0,205,2501 0/0:44,0:44:99:0,120,1489 0/0:49,0:49:99:0,135,1673 0/1:125,94:219:99:2427,0,3463 0/0:60,0:60:99:0,175,2090 0/1:41,31:72:99:815,0,1201 0/0:64,0:64:99:0,178,2188 0/0:108,0:108:99:0,301,3695 0/0:98,0:98:99:0,271,3330 0/0:130,0:130:99:0,325,4104 0/0:67,0:67:99:0,184,2212 0/0:218,0:218:99:0,590,7445 0/0:119,0:119:99:0,325,4084 0/0:131,0:131:99:0,346,4421 0/0:128,0:128:99:0,337,4289 0/0:58,0:58:99:0,166,2005 0/0:68,0:68:99:0,181,2220 0/0:68,0:68:99:0,184,2262 0/0:72,0:72:99:0,199,2439 0/0:69,0:69:99:0,193,2370 0/0:114,0:114:99:0,304,3818 0/0:74,0:74:99:0,208,2524 0/0:59,0:59:99:0,165,2018 0/0:62,1:63:99:0,150,2135 0/0:82,0:82:99:0,214,2643 0/0:104,0:104:99:0,274,3377 0/0:55,0:55:99:0,144,1771 0/0:64,0:64:99:0,178,2189 0/0:75,0:75:99:0,214,2596 0/0:54,0:54:99:0,150,1848 0/0:91,0:91:99:0,259,3131 1 209800230 . C T 933.21 . 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A G 1145.14 . AC=1;AF=0.012;AN=84;BaseQRankSum=8.887;DP=2927;Dels=0.00;FS=2.900;HRun=0;HaplotypeScore=1.2033;InbreedingCoeff=-0.0120;MQ=59.17;MQ0=0;MQRankSum=-0.582;QD=12.18;ReadPosRankSum=1.496 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,150,1836 0/0:59,0:59:99:0,166,2017 0/0:61,0:61:99:0,156,1978 0/0:122,0:122:99:0,319,4029 0/1:56,38:94:99:1191,0,1704 0/0:104,0:104:99:0,265,3435 0/0:87,0:87:99:0,238,2972 0/0:95,0:95:99:0,259,3273 0/0:56,0:56:99:0,159,1947 0/0:54,0:54:99:0,147,1794 0/0:45,0:45:99:0,126,1562 0/0:70,0:70:99:0,184,2281 0/0:42,0:42:99:0,123,1510 0/0:54,0:54:99:0,153,1875 0/0:187,0:187:99:0,472,5871 0/0:55,0:55:99:0,150,1862 0/0:59,0:59:99:0,162,1987 0/0:50,0:50:99:0,144,1759 0/0:65,0:65:99:0,175,2189 0/0:87,0:87:99:0,220,2758 0/0:87,0:87:99:0,229,2801 0/0:50,0:50:99:0,129,1589 0/0:117,0:117:99:0,319,4011 0/0:73,0:73:99:0,184,2392 0/0:97,0:97:99:0,256,3273 0/0:80,0:80:99:0,208,2644 0/0:40,0:40:99:0,111,1345 0/0:52,0:53:99:0,144,1769 0/0:50,0:50:99:0,135,1653 0/0:55,0:56:99:0,150,1836 0/0:49,0:49:99:0,138,1691 0/0:81,0:81:99:0,220,2713 0/0:46,0:46:99:0,123,1525 0/0:55,0:55:99:0,144,1753 0/0:51,0:51:99:0,141,1728 0/0:63,0:64:99:0,169,2060 0/0:95,0:95:99:0,259,3162 0/0:58,0:58:99:0,159,1963 0/0:45,0:45:99:0,129,1532 0/0:64,0:64:99:0,175,2138 0/0:49,0:49:99:0,135,1654 0/0:64,0:65:99:0,181,2194 1 210001460 . A G 2386.21 . 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G A 1181.62 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.930;DP=5014;DS;Dels=0.00;FS=9.404;HRun=1;HaplotypeScore=2.4143;InbreedingCoeff=-0.0120;MQ=59.21;MQ0=0;MQRankSum=0.895;QD=13.43;ReadPosRankSum=1.382 GT:AD:DP:GQ:PL 0/0:89,0:89:99:0,235,2737 0/0:89,0:89:99:0,232,2656 0/0:94,0:94:99:0,265,2970 0/0:241,0:242:99:0,614,7568 0/0:241,0:241:99:0,614,7631 0/0:189,0:189:99:0,463,5728 0/0:154,0:154:99:0,406,4916 0/0:173,0:173:99:0,415,5162 0/0:78,0:78:99:0,198,2261 0/1:43,45:88:99:1228,0,1044 0/0:85,0:85:99:0,220,2555 0/0:64,0:64:99:0,168,1936 0/0:90,0:91:99:0,220,2619 0/0:83,0:83:99:0,226,2556 0/0:242,0:242:99:0,638,7263 0/0:65,0:65:99:0,162,1902 0/0:80,0:80:99:0,216,2421 0/0:71,0:71:99:0,184,2150 0/0:134,1:136:99:0,355,4134 0/0:149,0:149:99:0,370,4321 0/0:143,0:143:99:0,382,4352 0/0:111,1:112:99:0,267,3330 0/0:249,1:250:99:0,625,7991 0/0:169,0:169:99:0,436,5406 0/0:166,0:166:99:0,430,5407 0/0:129,1:130:99:0,337,4150 0/0:79,0:79:99:0,198,2287 0/0:96,0:96:99:0,253,2911 0/0:80,0:80:99:0,220,2506 0/0:68,0:68:99:0,189,2147 0/0:74,0:74:99:0,195,2212 0/0:178,0:178:99:0,424,5074 0/0:117,0:117:99:0,298,3444 0/0:92,0:92:99:0,247,2767 0/0:77,0:77:99:0,196,2290 0/0:92,0:92:99:0,229,2649 0/0:143,1:144:99:0,355,4305 0/0:101,0:101:99:0,256,2908 0/0:65,0:66:99:0,180,2007 0/0:84,0:84:99:0,226,2618 0/0:85,0:85:99:0,226,2523 0/0:108,0:108:99:0,277,3215 1 210412943 . G T 177.18 . 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T C 981.74 . 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G C 9.58 . AC=1;AF=0.013;AN=78;BaseQRankSum=-3.609;DP=206;Dels=0.00;FS=12.620;HRun=1;HaplotypeScore=0.4529;InbreedingCoeff=-0.0892;MQ=57.65;MQ0=0;MQRankSum=1.110;QD=1.92;ReadPosRankSum=-2.360 GT:AD:DP:GQ:PL 0/0:1,1:2:3.01:0,3,39 0/0:4,0:4:9.03:0,9,105 0/0:6,0:6:12.02:0,12,127 0/0:17,0:17:42.11:0,42,515 0/0:12,0:12:33.09:0,33,398 0/0:3,0:3:9.02:0,9,104 0/0:14,0:14:33.10:0,33,425 0/0:5,0:5:12.04:0,12,157 0/0:4,0:4:9.02:0,9,98 0/0:3,0:3:9.01:0,9,88 0/0:2,0:2:3.01:0,3,32 0/0:3,0:3:9.02:0,9,97 0/0:2,0:2:6.01:0,6,65 0/0:6,0:6:15.04:0,15,181 0/0:12,1:14:21.05:0,21,235 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,31 0/0:1,0:1:3.01:0,3,36 0/0:4,0:4:6.02:0,6,73 0/0:7,0:7:18.05:0,18,213 0/1:3,2:5:30.29:54,0,30 0/0:5,0:5:9.02:0,9,94 0/0:14,1:15:33.09:0,33,404 0/0:5,1:6:12.04:0,12,164 0/0:4,0:4:6:0,6,61 0/0:7,0:7:21.06:0,21,260 0/0:3,0:3:9.03:0,9,108 0/0:4,0:4:9.03:0,9,108 0/0:4,0:4:12.04:0,12,152 0/0:1,0:1:3.01:0,3,36 0/0:4,0:4:6:0,6,57 0/0:8,1:9:18.06:0,18,221 0/0:5,0:5:6.02:0,6,78 0/0:2,0:2:6.02:0,6,68 0/0:3,0:3:6.02:0,6,68 ./. 0/0:5,0:5:9.03:0,9,109 0/0:4,0:4:6.01:0,6,65 0/0:1,0:1:3:0,3,29 0/0:5,1:6:6:0,6,64 ./. ./. 1 212459615 . C G 10.96 . AC=2;AF=0.024;AN=82;BaseQRankSum=-1.190;DP=192;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2426;InbreedingCoeff=0.0996;MQ=56.83;MQ0=0;MQRankSum=0.723;QD=2.74;ReadPosRankSum=0.299 GT:AD:DP:GQ:PL 0/0:3,0:3:9.03:0,9,112 0/0:3,0:3:9.03:0,9,111 0/0:3,0:3:6.02:0,6,69 0/0:12,0:12:30.10:0,30,405 0/0:6,0:6:18.06:0,18,232 0/0:2,0:2:6.02:0,6,78 0/0:2,0:2:6.02:0,6,82 0/0:2,0:2:3.01:0,3,41 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:6.02:0,6,76 0/0:5,0:5:9.03:0,9,106 0/0:2,0:2:3.01:0,3,45 0/0:4,0:4:9.03:0,9,113 0/0:13,0:13:36.10:0,36,433 0/0:3,0:3:9.03:0,9,116 0/0:2,0:2:6.02:0,6,75 0/0:1,0:1:3.01:0,3,36 0/0:16,0:16:45.11:0,45,533 0/0:9,0:9:27.09:0,27,345 0/0:7,0:7:18.06:0,18,235 0/0:5,0:5:15.05:0,15,190 0/0:12,0:12:33.11:0,33,434 0/0:5,0:5:12.04:0,12,163 0/0:5,0:5:12.04:0,12,159 ./. 0/1:0,2:2:1.76:45,3,0 0/1:1,1:2:29.23:29,0,30 0/0:6,0:7:15.05:0,15,197 0/0:8,0:8:24.07:0,24,295 0/0:3,0:3:9.03:0,9,116 0/0:7,0:7:18.05:0,18,225 0/0:6,0:6:15.05:0,15,196 0/0:3,0:3:9.02:0,9,103 0/0:2,0:2:6.02:0,6,76 0/0:4,0:4:12.04:0,12,144 0/0:5,0:5:15.05:0,15,182 0/0:2,0:2:6.02:0,6,78 0/0:2,0:2:6.02:0,6,76 0/0:7,0:7:18.06:0,18,231 0/0:3,0:3:9.03:0,9,112 0/0:2,0:2:6.02:0,6,78 1 212606458 . A G 10.08 . AC=2;AF=0.059;AN=34;BaseQRankSum=-1.582;DP=44;Dels=0.00;FS=16.628;HRun=4;HaplotypeScore=0.1067;InbreedingCoeff=-0.0080;MQ=56.99;MQ0=0;MQRankSum=0.347;QD=2.02;ReadPosRankSum=-1.350 GT:AD:DP:GQ:PL ./. ./. ./. ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,36 0/0:2,1:3:6.02:0,6,75 0/0:2,0:2:6.02:0,6,75 ./. 0/0:2,0:2:6.02:0,6,76 0/0:1,0:1:3.01:0,3,38 ./. 0/0:1,0:1:3.01:0,3,39 ./. ./. ./. ./. 0/1:2,2:4:28.33:28,0,33 ./. 0/0:4,1:5:12.03:0,12,134 0/0:1,0:1:3.01:0,3,39 ./. ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,34 0/1:0,1:1:1.76:34,3,0 ./. ./. ./. 0/0:1,0:1:3.01:0,3,38 0/0:2,0:2:6.02:0,6,68 ./. 0/0:1,1:2:3.01:0,3,32 ./. 0/0:1,1:2:3.01:0,3,33 0/0:1,1:2:3.01:0,3,38 ./. 0/0:1,0:1:2.99:0,3,24 1 212788567 . C T 1075.23 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.125;DP=2305;DS;Dels=0.00;FS=5.223;HRun=0;HaplotypeScore=1.1841;InbreedingCoeff=-0.0244;MQ=59.23;MQ0=0;MQRankSum=0.468;QD=11.08;ReadPosRankSum=0.116 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,150,1686 0/0:57,0:57:99:0,153,1702 0/0:35,0:36:99:0,99,1056 0/0:83,0:83:99:0,223,2685 0/0:74,0:74:99:0,211,2564 0/0:73,0:73:99:0,199,2361 0/0:55,0:55:99:0,153,1814 0/0:48,0:48:99:0,144,1710 0/1:38,18:56:99:434,0,1000 0/0:42,0:42:99:0,114,1243 0/1:17,24:41:99:704,0,380 0/0:40,0:41:99:0,114,1263 0/0:51,0:51:99:0,126,1459 0/0:39,0:39:99:0,117,1290 0/0:148,0:148:99:0,382,4318 0/0:49,0:49:99:0,144,1593 0/0:49,0:49:99:0,135,1489 0/0:43,0:43:99:0,120,1318 0/0:76,0:76:99:0,195,2178 0/0:93,0:93:99:0,256,2821 0/0:66,0:69:99:0,186,2068 0/0:41,0:42:99:0,117,1267 0/0:86,0:86:99:0,235,2822 0/0:46,0:46:99:0,123,1520 0/0:49,0:49:99:0,132,1629 0/0:44,0:44:99:0,114,1428 0/0:33,0:33:96.25:0,96,1067 0/0:44,0:44:99:0,126,1390 0/0:30,0:30:90.22:0,90,979 0/0:51,0:51:99:0,141,1561 0/0:42,0:42:99:0,117,1321 0/0:66,0:66:99:0,180,2045 0/0:59,0:59:99:0,156,1763 0/0:51,0:51:99:0,141,1550 0/0:58,0:58:99:0,165,1788 0/0:43,0:43:99:0,126,1380 0/0:55,0:57:99:0,159,1719 0/0:41,0:41:99:0,111,1234 0/0:45,0:45:99:0,126,1401 0/0:49,0:49:99:0,135,1455 0/0:44,0:44:99:0,123,1372 0/0:45,0:45:99:0,117,1338 1 212911836 . T C 149724.23 . AC=64;AF=0.762;AN=84;BaseQRankSum=3.570;DP=6071;DS;Dels=0.00;FS=0.943;HRun=0;HaplotypeScore=2.2649;InbreedingCoeff=-0.3125;MQ=59.54;MQ0=0;MQRankSum=1.048;QD=24.66;ReadPosRankSum=0.231 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3328,289,0 1/1:0,97:97:99:3243,277,0 1/1:0,72:72:99:2402,208,0 1/1:0,250:250:99:8841,707,0 0/1:124,121:245:99:3731,0,3734 1/1:1,249:250:99:9154,681,0 1/1:0,247:247:99:8956,692,0 1/1:0,247:248:99:9134,713,0 0/1:65,67:132:99:1829,0,1874 0/1:61,53:114:99:1385,0,1706 1/1:0,99:99:99:3323,286,0 0/1:72,58:130:99:1656,0,2023 0/1:51,42:93:99:1140,0,1446 0/1:56,45:101:99:1272,0,1591 0/1:136,111:247:99:2840,0,3743 0/1:45,37:82:99:945,0,1365 0/1:70,60:130:99:1556,0,2008 1/1:1,115:116:99:3755,294,0 1/1:0,164:164:99:5298,454,0 1/1:0,155:155:99:5109,430,0 0/1:91,93:184:99:2482,0,2508 0/1:51,50:101:99:1397,0,1453 1/1:0,249:249:99:9029,701,0 0/1:118,129:247:99:3891,0,3336 0/1:124,126:250:99:3835,0,3639 1/1:0,249:249:99:8859,689,0 0/1:40,50:90:99:1403,0,1051 0/1:52,47:99:99:1200,0,1492 1/1:0,79:79:99:2629,226,0 1/1:0,97:97:99:3160,268,0 0/1:56,53:109:99:1382,0,1590 0/1:71,74:145:99:1918,0,2017 1/1:0,90:91:99:2973,256,0 1/1:0,100:100:99:3252,274,0 0/1:57,63:120:99:1662,0,1630 1/1:0,133:133:99:4248,358,0 1/1:0,112:113:99:3723,325,0 0/1:50,47:97:99:1256,0,1446 0/1:53,64:117:99:1789,0,1504 1/1:0,120:120:99:3852,331,0 1/1:0,83:83:99:2798,241,0 1/1:0,122:122:99:4090,352,0 1 214542819 . T C 153262.89 . AC=68;AF=0.810;AN=84;BaseQRankSum=12.770;DP=5370;DS;Dels=0.00;FS=13.362;HRun=1;HaplotypeScore=1.9479;InbreedingCoeff=0.0735;MQ=59.50;MQ0=0;MQRankSum=0.107;QD=30.59;ReadPosRankSum=-2.612 GT:AD:DP:GQ:PL 0/1:40,38:78:99:1146,0,1270 1/1:0,82:82:99:2831,232,0 1/1:0,88:88:99:3214,256,0 0/1:118,125:243:99:4005,0,3666 1/1:0,226:226:99:8747,656,0 1/1:0,176:177:99:6814,515,0 1/1:0,183:183:99:7109,533,0 1/1:0,162:162:99:6054,454,0 1/1:0,96:96:99:3424,271,0 1/1:0,80:80:99:2902,232,0 0/1:65,43:108:99:1165,0,2095 0/0:109,0:109:99:0,325,4028 0/1:51,42:93:99:1207,0,1566 0/1:43,49:92:99:1598,0,1212 0/1:126,124:250:99:3871,0,3661 1/1:0,91:91:99:3438,274,0 0/1:64,56:120:99:1657,0,2035 1/1:0,91:91:99:3230,259,0 1/1:1,145:147:99:5293,405,0 1/1:0,189:189:99:6653,527,0 1/1:0,162:163:99:5799,463,0 1/1:0,96:96:99:3455,274,0 0/0:250,0:250:99:0,725,9369 1/1:0,167:167:99:6460,488,0 1/1:0,201:202:99:7848,590,0 1/1:0,171:172:99:6716,506,0 1/1:0,80:80:99:2819,223,0 1/1:0,83:83:99:3081,247,0 1/1:0,84:84:99:3067,241,0 1/1:0,84:84:99:3090,247,0 0/1:44,53:97:99:1673,0,1246 1/1:0,178:178:99:6313,497,0 1/1:0,97:97:99:3423,271,0 1/1:0,100:100:99:3688,298,0 0/1:48,48:96:99:1429,0,1384 1/1:0,111:111:99:4133,328,0 1/1:0,145:147:99:5303,430,0 1/1:0,85:85:99:3122,250,0 1/1:0,104:104:99:3785,307,0 0/1:56,50:106:99:1558,0,1661 0/1:44,28:73:99:820,0,1382 0/1:46,44:90:99:1322,0,1383 1 214549699 . T C 1967.12 . 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G A 61062.17 . 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C G 22632.69 . 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T C 59.44 . AC=1;AF=0.021;AN=48;BaseQRankSum=1.469;DP=67;Dels=0.00;FS=2.176;HRun=0;HaplotypeScore=0.0916;InbreedingCoeff=-0.1451;MQ=58.61;MQ0=0;MQRankSum=-0.274;QD=14.86;ReadPosRankSum=-1.049 GT:AD:DP:GQ:PL ./. ./. 0/0:2,0:2:6.02:0,6,72 0/0:1,0:1:3.01:0,3,36 0/0:2,0:2:6.02:0,6,73 0/0:2,0:2:3.01:0,3,45 0/0:1,0:1:3.01:0,3,36 0/0:4,0:4:12.04:0,12,146 ./. ./. 0/0:3,0:3:5.99:0,6,58 ./. ./. ./. ./. 0/0:6,0:6:15.04:0,15,183 0/0:3,0:3:6.02:0,6,82 ./. 0/0:5,0:5:9.02:0,9,107 0/0:1,0:1:3.01:0,3,35 ./. 0/0:2,0:2:3.01:0,3,35 0/0:2,0:2:3.01:0,3,45 0/0:2,0:2:6.02:0,6,66 0/1:1,3:4:23.22:102,0,23 0/0:4,0:4:9.03:0,9,118 ./. ./. 0/0:1,0:1:3.01:0,3,36 ./. ./. 0/0:7,0:7:12.03:0,12,147 0/0:1,0:1:3.01:0,3,37 ./. 0/0:4,0:4:6.02:0,6,80 0/0:1,0:1:3.01:0,3,33 0/0:6,0:6:12.04:0,12,165 0/0:2,0:2:6.02:0,6,68 0/0:1,0:1:3.01:0,3,31 ./. ./. ./. 1 223900408 . C G 12679.33 . 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C T 5655.60 . 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A C 21321.30 . 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G A 1341.11 . 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A C 64.37 . 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G A 8137.81 . 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C T 997.37 . 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C T 2375.54 . 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C T 198.69 . 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C T 185926.08 . 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C T 1026.50 . 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C T 55839.37 . 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A G 58812.67 . AC=64;AF=0.762;AN=84;BaseQRankSum=5.937;DP=2229;Dels=0.00;FS=2.462;HRun=4;HaplotypeScore=2.0502;InbreedingCoeff=0.2125;MQ=59.32;MQ0=0;MQRankSum=0.416;QD=28.33;ReadPosRankSum=-0.520 GT:AD:DP:GQ:PL 0/1:25,23:48:99:674,0,746 0/0:44,0:44:99:0,129,1565 0/0:29,0:29:84.27:0,84,1054 1/1:0,116:116:99:4437,343,0 1/1:0,112:112:99:4220,325,0 0/1:51,41:92:99:1231,0,1537 0/1:41,46:87:99:1563,0,1127 0/1:33,34:67:99:1075,0,978 0/1:20,18:38:99:530,0,597 0/0:40,0:40:99:0,117,1432 1/1:0,37:37:99:1243,102,0 0/1:25,18:43:99:536,0,767 0/1:19,16:35:99:474,0,558 1/1:0,36:36:99:1232,102,0 0/1:59,74:133:99:2185,0,1773 0/0:40,0:40:99:0,117,1445 1/1:0,48:50:99:1606,129,0 0/1:17,20:37:99:620,0,519 0/1:24,20:46:99:569,0,722 1/1:0,69:69:99:2463,205,0 1/1:0,62:62:99:2169,181,0 1/1:0,33:33:90.21:1050,90,0 1/1:0,117:117:99:4473,340,0 1/1:0,55:55:99:2019,156,0 1/1:0,70:70:99:2498,193,0 1/1:0,35:35:96.25:1209,96,0 1/1:0,30:30:87.26:1052,87,0 1/1:0,33:33:99:1183,99,0 1/1:0,38:38:99:1354,111,0 1/1:0,52:52:99:1814,150,0 1/1:0,47:47:99:1681,135,0 0/1:30,33:63:99:1052,0,836 1/1:0,43:43:99:1519,126,0 1/1:0,44:44:99:1497,123,0 1/1:0,31:31:93.26:1122,93,0 1/1:1,43:44:99:1532,126,0 1/1:0,51:52:99:1698,141,0 1/1:0,34:34:99:1164,99,0 1/1:0,29:29:81.25:1008,81,0 1/1:0,34:34:93.27:1122,93,0 1/1:0,40:40:99:1392,114,0 0/1:25,19:44:99:545,0,756 1 225699539 . G C 354.07 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.020;DP=880;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2094;InbreedingCoeff=-0.0123;MQ=58.88;MQ0=0;MQRankSum=3.038;QD=12.65;ReadPosRankSum=-0.000 GT:AD:DP:GQ:PL 0/0:31,0:31:81.26:0,81,1048 0/0:20,0:20:51.17:0,51,677 0/0:28,0:28:78.25:0,78,1004 0/0:25,0:25:60.20:0,60,822 0/0:32,0:32:87.29:0,87,1215 0/0:23,0:23:57.19:0,57,785 0/0:18,0:18:48.16:0,48,674 0/0:21,0:21:51.17:0,51,720 0/0:17,0:17:48.15:0,48,621 0/0:17,0:17:45.14:0,45,587 0/0:16,0:16:48.16:0,48,624 0/0:11,0:11:30.10:0,30,386 0/0:31,0:31:75.23:0,75,972 0/0:15,0:15:39.13:0,39,509 0/0:70,0:70:99:0,160,2127 0/0:11,0:11:27.09:0,27,363 0/0:18,0:18:48.16:0,48,631 0/0:20,0:20:54.18:0,54,711 0/0:19,0:19:45.14:0,45,586 0/0:23,0:23:60.19:0,60,787 0/0:12,0:12:30.10:0,30,398 0/0:12,0:12:33.10:0,33,420 0/0:27,0:27:75.25:0,75,1048 0/0:31,0:31:72.24:0,72,1017 0/0:20,0:20:48.16:0,48,664 0/1:11,17:28:99:400,0,320 0/0:23,0:23:51.17:0,51,689 0/0:24,0:24:63.20:0,63,814 0/0:19,0:19:51.17:0,51,665 0/0:20,0:20:45.15:0,45,610 0/0:8,0:8:24.08:0,24,311 0/0:22,0:22:45.15:0,45,618 0/0:9,0:9:24.08:0,24,308 0/0:15,0:15:39.11:0,39,501 0/0:22,0:22:60.19:0,60,772 0/0:11,0:11:27.09:0,27,351 0/0:19,0:19:45.14:0,45,575 0/0:22,0:22:63.20:0,63,817 0/0:28,0:28:66.21:0,66,876 0/0:8,0:8:24.08:0,24,303 0/0:21,0:21:63.20:0,63,802 0/0:13,0:13:39.12:0,39,488 1 226026406 . A G 18965.31 . AC=14;AF=0.167;AN=84;BaseQRankSum=-11.774;DP=5218;DS;Dels=0.00;FS=1.087;HRun=0;HaplotypeScore=4.1525;InbreedingCoeff=-0.2000;MQ=59.21;MQ0=0;MQRankSum=-0.518;QD=11.36;ReadPosRankSum=-2.215 GT:AD:DP:GQ:PL 0/0:95,1:96:99:0,237,3158 0/0:78,1:79:99:0,232,2750 0/0:54,0:54:99:0,150,1812 0/0:247,0:247:99:0,674,7967 0/0:241,0:241:99:0,632,7586 0/0:246,0:246:99:0,635,7891 0/1:120,67:187:99:1746,0,3270 0/0:242,0:243:99:0,608,7514 0/1:42,34:76:99:804,0,1153 0/1:30,25:55:99:628,0,853 0/0:66,1:68:99:0,181,2118 0/0:74,0:75:99:0,199,2418 0/0:58,0:58:99:0,147,1826 0/0:80,0:80:99:0,223,2682 0/1:139,110:249:99:2714,0,3744 0/0:91,0:91:99:0,250,2976 0/1:35,31:66:99:777,0,988 0/0:79,0:79:99:0,229,2718 0/0:180,0:180:99:0,478,5784 0/0:186,0:186:99:0,484,5936 0/1:89,67:157:99:1681,0,2292 0/0:111,0:111:99:0,298,3596 0/0:241,0:241:99:0,665,7986 0/0:187,1:188:99:0,475,5913 0/0:220,2:222:99:0,530,6759 0/1:81,80:161:99:2159,0,2067 0/1:27,33:60:99:886,0,709 0/0:73,0:73:99:0,205,2442 0/1:35,41:76:99:1031,0,952 0/0:96,0:96:99:0,259,3090 0/0:78,0:78:99:0,223,2666 0/1:101,82:183:99:2113,0,2601 0/0:115,1:117:99:0,325,3854 0/0:64,0:64:99:0,181,2183 0/0:96,2:98:99:0,209,3159 0/0:75,0:75:99:0,202,2454 0/1:102,78:181:99:1807,0,2792 0/1:43,30:73:99:770,0,1207 0/0:82,0:82:99:0,223,2681 0/1:43,43:86:99:1103,0,1152 0/1:30,29:59:99:746,0,845 0/0:80,0:80:99:0,220,2658 1 226054333 . G A 10427.55 . AC=12;AF=0.143;AN=84;BaseQRankSum=-10.180;DP=2706;Dels=0.00;FS=1.610;HRun=1;HaplotypeScore=1.3280;InbreedingCoeff=0.0278;MQ=59.29;MQ0=0;MQRankSum=1.065;QD=15.61;ReadPosRankSum=-0.269 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,138,1801 0/0:55,0:55:99:0,150,1921 0/0:46,0:46:99:0,126,1627 0/1:43,26:69:99:603,0,1250 0/0:76,0:76:99:0,190,2617 0/0:42,0:42:99:0,111,1519 0/0:66,0:66:99:0,163,2227 0/0:40,0:40:99:0,102,1423 0/0:64,0:64:99:0,163,2129 0/0:54,0:54:99:0,153,1917 0/1:27,26:53:99:768,0,785 0/0:65,0:65:99:0,181,2321 0/1:15,28:43:99:783,0,435 0/0:62,1:63:99:0,127,2041 0/0:215,0:216:99:0,539,6978 0/1:30,32:62:99:936,0,853 0/0:52,0:53:99:0,141,1796 0/1:24,34:58:99:1005,0,679 0/0:96,0:97:99:0,262,3303 0/0:89,0:89:99:0,235,3015 0/1:53,40:93:99:1007,0,1594 0/1:29,34:63:99:873,0,818 1/1:0,73:73:99:2527,196,0 0/0:46,0:46:99:0,111,1557 0/0:50,0:50:99:0,132,1810 0/0:41,0:41:99:0,114,1521 0/0:42,0:42:99:0,111,1427 0/1:24,27:51:99:758,0,599 0/0:46,0:46:99:0,129,1644 0/0:63,0:63:99:0,175,2242 0/1:32,25:57:99:696,0,954 0/0:89,0:89:99:0,232,2994 0/0:84,0:84:99:0,229,2927 0/0:58,0:58:99:0,163,2074 0/1:26,20:46:99:472,0,822 0/0:68,0:68:99:0,187,2393 0/0:98,0:101:99:0,250,3222 0/0:44,0:46:99:0,129,1628 0/0:52,0:52:99:0,144,1830 0/0:63,0:63:99:0,181,2278 0/0:37,0:37:99:0,102,1293 0/0:69,0:69:99:0,184,2368 1 226075310 . T C 235.45 . AC=12;AF=0.143;AN=84;BaseQRankSum=-9.043;DP=795;Dels=0.00;FS=364.980;HRun=2;HaplotypeScore=0.5838;InbreedingCoeff=-0.2001;MQ=38.18;MQ0=139;MQRankSum=0.976;QD=1.19;ReadPosRankSum=-10.305 GT:AD:DP:GQ:PL 0/0:16,7:23:33.09:0,33,372 0/1:13,3:16:27.15:27,0,254 0/1:6,6:12:10.50:10,0,181 0/0:17,10:27:22.97:0,23,502 0/0:25,18:43:60.18:0,60,701 0/0:17,9:26:44.15:0,44,491 0/0:12,10:22:6.45:0,6,334 0/1:12,7:19:42.92:43,0,273 0/1:11,6:17:17.14:17,0,346 0/0:11,3:14:15.04:0,15,166 0/1:9,11:21:88.96:89,0,197 0/0:6,5:11:15.04:0,15,173 0/0:5,2:7:9.02:0,9,101 0/0:9,5:14:18.05:0,18,204 0/0:27,14:41:33.91:0,34,828 0/1:14,14:28:73.94:74,0,401 0/1:10,10:20:32.17:32,0,224 0/0:7,3:10:21.04:0,21,216 0/0:18,7:25:35.96:0,36,384 0/0:16,9:25:21.07:0,21,257 0/0:20,7:27:22.61:0,23,579 0/1:6,4:10:11.57:12,0,164 0/0:29,14:43:35.15:0,35,758 0/0:10,8:18:2.30:2,0,266 0/0:12,7:19:6.61:0,7,389 0/1:6,5:11:10.65:11,0,123 0/0:9,3:12:24.05:0,24,259 0/1:8,5:13:14.71:15,0,156 0/0:10,3:13:1.90:3,0,223 0/0:12,4:16:1.99:0,2,284 0/0:7,3:10:18.05:0,18,210 0/0:20,8:28:57.16:0,57,661 0/0:7,5:12:15.04:0,15,178 0/1:11,4:15:33.23:33,0,185 0/0:9,4:13:12.03:0,12,134 0/1:12,3:16:4.48:4,0,243 0/0:14,4:18:5.68:0,6,388 0/0:8,3:11:18.05:0,18,205 0/0:15,6:21:36.09:0,36,400 0/0:9,6:15:24.06:0,24,264 0/0:8,3:11:21.06:0,21,242 0/0:12,10:22:30.08:0,30,344 1 226075608 . G A 458.09 . AC=15;AF=0.208;AN=72;BaseQRankSum=-3.405;DP=157;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.1977;InbreedingCoeff=0.0074;MQ=25.55;MQ0=36;MQRankSum=0.894;QD=8.18;ReadPosRankSum=1.144 GT:AD:DP:GQ:PL ./. 0/0:1,0:1:3:0,3,27 0/0:4,0:4:6.02:0,6,77 0/0:7,0:7:15.04:0,15,177 0/1:6,4:10:94.16:94,0,127 1/1:1,2:3:3:27,3,0 1/1:0,3:3:9.02:94,9,0 0/1:2,0:2:1.76:0,3,27 0/1:2,2:4:28.78:54,0,29 ./. 0/1:2,2:4:17.67:18,0,47 0/1:2,3:5:25.34:44,0,25 ./. 1/1:2,4:6:12.04:146,12,0 0/0:7,0:7:9.01:0,9,91 0/0:3,0:3:3.01:0,3,38 0/1:5,1:6:17.66:18,0,62 0/0:1,0:1:3.01:0,3,39 0/0:7,0:7:9.02:0,9,94 0/0:4,0:4:9.01:0,9,93 0/0:2,0:2:6.01:0,6,60 0/0:4,0:4:3.01:0,3,34 0/0:3,0:3:6.01:0,6,64 0/0:2,0:2:6.02:0,6,67 0/0:6,0:6:15.03:0,15,160 0/0:2,0:2:6.01:0,6,66 ./. 0/0:5,0:5:6:0,6,53 0/0:3,0:3:3.01:0,3,34 ./. 0/0:3,0:3:9.02:0,9,105 0/1:2,3:5:24.42:55,0,24 0/0:8,0:8:6.01:0,6,65 ./. 0/0:4,0:4:6:0,6,54 0/0:3,0:3:3.01:0,3,39 0/1:3,1:4:21.66:22,0,24 0/0:4,0:4:6.01:0,6,65 0/1:2,2:4:20.67:22,0,21 0/0:4,0:4:3.01:0,3,33 0/0:4,0:4:6.01:0,6,66 0/0:4,0:4:6:0,6,53 1 226076669 . C T 213.11 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.858;DP=448;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5992;InbreedingCoeff=-0.0463;MQ=53.48;MQ0=5;MQRankSum=2.404;QD=8.88;ReadPosRankSum=1.261 GT:AD:DP:GQ:PL 0/0:5,0:5:15.03:0,15,152 0/0:12,0:12:36.09:0,36,400 0/0:5,0:5:15.04:0,15,165 0/0:16,0:16:36.08:0,36,421 0/0:17,0:17:45.14:0,45,565 0/0:7,0:7:18.05:0,18,212 0/0:6,0:6:18.05:0,18,202 0/0:12,0:12:30.07:0,30,351 0/0:9,0:9:27.05:0,27,275 0/0:9,0:10:21.05:0,21,229 0/0:10,0:10:24.06:0,24,270 0/0:9,0:9:24.06:0,24,266 0/0:8,0:8:18.05:0,18,213 0/0:20,0:20:51.11:0,51,545 0/0:26,0:26:69.15:0,69,755 0/0:23,0:23:57.15:0,57,625 0/0:6,0:6:12.02:0,12,120 0/0:9,0:9:21.05:0,21,222 0/0:15,0:15:42.12:0,42,481 0/0:11,0:11:24.07:0,24,278 0/0:11,0:11:21.06:0,21,241 0/0:8,0:8:24.02:0,24,240 0/0:17,0:17:42.11:0,42,498 0/0:9,0:9:27.08:0,27,322 0/0:9,0:9:24.07:0,24,275 0/0:14,0:14:39.10:0,39,441 0/1:7,5:12:99:145,0,155 0/1:4,4:8:99:125,0,103 0/0:10,0:10:24.04:0,24,255 0/0:15,0:15:39.10:0,39,431 0/0:8,0:8:24.06:0,24,272 0/0:15,0:15:42.11:0,42,477 0/0:14,0:15:36.09:0,36,400 0/0:4,0:4:9.02:0,9,102 0/0:12,0:12:30.07:0,30,323 0/0:3,0:3:3.01:0,3,33 0/0:9,0:9:21.06:0,21,240 0/0:8,0:8:24.04:0,24,258 0/0:9,0:9:24.06:0,24,262 0/0:7,0:7:21.03:0,21,229 0/1:3,1:4:16.62:17,0,81 0/0:5,0:5:12.03:0,12,130 1 226109570 . G C 1344.39 . AC=27;AF=0.321;AN=84;BaseQRankSum=-2.968;DP=965;Dels=0.00;FS=1271.978;HRun=3;HaplotypeScore=0.6092;InbreedingCoeff=-0.4863;MQ=58.75;MQ0=0;MQRankSum=-0.089;QD=2.07;ReadPosRankSum=-11.794 GT:AD:DP:GQ:PL 0/0:16,4:20:16.99:0,17,395 0/1:9,7:16:47.17:47,0,168 0/1:9,12:21:96.25:96,0,176 0/1:36,16:52:91.59:92,0,754 0/1:14,10:25:99:101,0,332 0/0:21,7:28:40.33:0,40,455 0/0:16,3:19:4.01:0,4,320 0/0:16,4:20:13.41:0,13,413 0/1:14,7:21:44.31:44,0,280 0/1:13,6:19:31.04:31,0,257 0/0:18,4:22:44.78:0,45,452 0/1:15,5:20:35.12:35,0,311 0/1:12,7:19:86.54:87,0,172 0/1:12,3:15:17.16:17,0,282 0/1:52,17:69:99:102,0,961 0/1:19,11:30:99:151,0,394 0/1:18,6:24:8.33:8,0,340 0/1:8,4:12:43.62:44,0,166 0/1:18,8:27:2.37:0,1,244 0/0:30,12:42:4.48:0,4,554 0/1:24,12:36:99:109,0,466 0/1:16,6:22:4.31:4,0,290 0/1:22,9:31:57.02:57,0,478 0/1:12,5:17:99:102,0,236 0/1:14,5:19:36:36,0,281 0/0:10,1:11:4.40:0,4,273 0/1:17,4:21:85.69:86,0,290 0/0:19,4:23:11.85:0,12,353 0/1:9,2:11:9.56:10,0,161 0/1:17,2:19:23.69:24,0,408 0/0:11,3:14:33.01:0,33,329 0/0:29,4:33:9.35:0,9,662 0/1:22,9:31:53.35:53,0,392 0/0:12,2:15:3.38:0,3,257 0/0:13,2:15:22.30:0,22,254 0/0:14,5:19:33.61:0,34,356 0/1:19,5:24:47.67:48,0,299 0/0:13,5:18:33.06:0,33,333 0/0:16,2:18:5.41:0,5,286 0/1:11,3:14:26.58:27,0,233 0/1:15,7:22:50.77:51,0,242 0/1:8,3:11:51.87:52,0,102 1 226347042 . G C 6.47 . AC=1;AF=0.012;AN=84;BaseQRankSum=-16.571;DP=3043;Dels=0.00;FS=85.305;HRun=1;HaplotypeScore=2.8273;InbreedingCoeff=-0.0364;MQ=58.85;MQ0=0;MQRankSum=-1.528;QD=0.09;ReadPosRankSum=-7.254 GT:AD:DP:GQ:PL 0/0:42,5:47:93.14:0,93,1013 0/0:43,6:49:54.49:0,54,876 0/0:35,11:46:45.89:0,46,824 0/0:107,26:133:99:0,225,2845 0/0:124,20:144:99:0,208,3115 0/0:102,9:112:99:0,141,2361 0/0:81,8:89:99:0,183,2065 0/0:94,4:98:99:0,164,2515 0/0:50,14:64:42.28:0,42,1191 0/0:43,6:49:20.13:0,20,917 0/0:43,10:53:0.74:7,0,890 0/0:46,9:55:93.24:0,93,1094 0/0:36,8:44:51.50:0,52,860 0/0:59,7:66:99:0,126,1416 0/0:126,43:169:99:0,178,3399 0/0:46,13:59:43.79:0,44,929 0/0:48,5:53:99:0,117,1329 0/0:50,6:58:88.59:0,89,1271 0/1:54,15:69:48.50:49,0,1245 0/0:65,4:69:99:0,150,1683 0/0:63,28:92:8.50:0,9,1490 0/0:36,8:44:89.66:0,90,1003 0/0:139,13:152:99:0,285,3600 0/0:117,8:125:99:0,209,2958 0/0:111,12:123:99:0,212,2816 0/0:87,5:92:99:0,169,2298 0/0:32,4:36:69.10:0,69,749 0/0:52,5:57:96.26:0,96,1110 0/0:46,10:56:68.61:0,69,1066 0/0:36,11:47:43.89:0,44,1001 0/0:47,10:57:83.51:0,84,1116 0/0:62,5:67:99:0,138,1549 0/0:45,9:54:99:0,102,1117 0/0:47,12:59:70.55:0,71,1053 0/0:38,8:46:66.19:0,66,804 0/0:35,10:45:22:0,22,758 0/0:60,20:80:0.15:15,0,1287 0/0:51,12:64:99:0,108,1171 0/0:52,10:62:53.28:0,53,1286 0/0:39,11:50:84.19:0,84,961 0/0:42,8:51:96.08:0,96,1124 0/0:51,7:58:96.59:0,97,1329 1 226352497 . T TG 218.62 . 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T G 84349.56 . 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T C 4033.96 . 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T C 661.08 . 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G C 138.28 . 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T C 63957.31 . 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C T 23521.38 . 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C T 961.17 . 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G A 953.75 . 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G A 10057.12 . 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T C 35539.90 . AC=24;AF=0.286;AN=84;BaseQRankSum=-3.523;DP=3378;Dels=0.00;FS=13.066;HRun=1;HaplotypeScore=1.6643;InbreedingCoeff=0.0667;MQ=59.19;MQ0=0;MQRankSum=2.188;QD=20.41;ReadPosRankSum=-0.605 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,156,1924 0/0:52,1:53:99:0,122,1785 0/0:62,1:63:99:0,130,2040 0/1:84,87:171:99:2589,0,2473 0/0:114,0:114:99:0,337,4214 0/0:100,0:100:99:0,289,3687 0/1:46,38:84:99:1058,0,1501 0/0:78,0:78:99:0,223,2808 0/1:27,17:44:99:490,0,786 0/0:44,1:45:98.97:0,99,1553 1/1:0,60:60:99:2114,177,0 0/0:54,0:54:99:0,153,1884 0/0:54,0:54:99:0,153,1911 0/0:60,0:60:99:0,172,2102 1/1:0,236:238:99:7734,638,0 0/1:31,25:56:99:613,0,934 0/1:27,34:61:99:955,0,799 0/0:56,0:56:99:0,156,1942 0/0:116,0:116:99:0,313,3855 0/0:138,0:138:99:0,391,4832 0/1:64,64:129:99:1793,0,1714 0/0:84,0:84:99:0,244,2947 1/1:0,136:136:99:5035,400,0 0/0:77,0:77:99:0,220,2773 0/0:95,0:95:99:0,271,3356 0/1:46,27:73:99:682,0,1448 0/1:23,21:45:99:541,0,725 0/1:22,35:57:99:976,0,608 0/0:53,0:53:99:0,156,1936 0/1:26,27:53:99:791,0,777 0/1:25,33:59:99:921,0,734 1/1:0,136:137:99:4593,388,0 0/1:48,52:100:99:1446,0,1420 0/1:31,22:53:99:647,0,957 0/0:45,1:46:99:0,100,1617 0/1:33,28:61:99:751,0,1017 0/0:120,0:120:99:0,340,4197 0/0:60,0:60:99:0,156,1950 0/0:53,0:53:99:0,159,1936 0/1:32,32:64:99:894,0,932 0/1:29,31:60:99:917,0,849 0/0:63,0:63:99:0,178,2208 1 227192702 . C A 39.22 . 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G C 548.63 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.731;DP=1060;Dels=0.00;FS=5.025;HRun=0;HaplotypeScore=0.3347;InbreedingCoeff=-0.0244;MQ=59.44;MQ0=0;MQRankSum=0.083;QD=13.72;ReadPosRankSum=0.010 GT:AD:DP:GQ:PL 0/0:21,0:21:57.18:0,57,724 0/0:17,0:17:51.16:0,51,643 0/0:17,0:17:45.14:0,45,571 0/0:28,0:28:78.26:0,78,1055 0/0:14,0:14:42.14:0,42,580 0/0:19,0:19:54.18:0,54,747 0/0:21,0:21:54.18:0,54,748 0/0:16,0:16:39.13:0,39,545 0/0:33,0:33:90.29:0,90,1170 0/0:23,0:23:66.21:0,66,831 0/0:20,0:20:54.17:0,54,687 0/0:25,0:25:60.19:0,60,788 0/0:30,0:30:78.25:0,78,1006 0/0:22,0:22:57.18:0,57,746 0/0:75,0:76:99:0,196,2543 0/1:6,6:12:99:191,0,187 0/0:26,0:26:72.23:0,72,922 0/0:20,0:20:57.18:0,57,742 0/0:34,0:34:90.29:0,90,1176 0/0:47,0:47:99:0,135,1709 0/0:46,0:46:99:0,114,1486 0/0:18,0:18:54.17:0,54,667 0/0:22,0:22:60.20:0,60,834 0/0:18,0:18:45.15:0,45,620 0/0:20,0:20:51.17:0,51,697 0/0:11,0:11:30.10:0,30,401 0/0:20,0:20:51.16:0,51,655 0/0:25,0:25:60.20:0,60,798 0/0:22,0:22:63.20:0,63,804 0/0:29,0:29:75.23:0,75,966 0/0:22,0:22:60.19:0,60,783 0/0:37,0:37:99:0,102,1321 0/1:14,14:28:99:420,0,452 0/0:19,0:19:48.16:0,48,632 0/0:25,0:25:66.21:0,66,855 0/0:33,0:33:81.26:0,81,1070 0/0:40,0:41:99:0,108,1367 0/0:15,0:15:42.13:0,42,529 0/0:19,0:19:57.18:0,57,724 0/0:25,0:25:60.19:0,60,793 0/0:22,0:22:57.18:0,57,742 0/0:22,0:22:63.20:0,63,799 1 227381550 . C T 4218.31 . AC=36;AF=0.429;AN=84;BaseQRankSum=-28.449;DP=2831;Dels=0.00;FS=1637.038;HRun=1;HaplotypeScore=2.6085;InbreedingCoeff=-0.7607;MQ=58.58;MQ0=0;MQRankSum=-1.930;QD=1.72;ReadPosRankSum=-18.014 GT:AD:DP:GQ:PL 0/1:47,23:70:27.72:28,0,1322 0/1:31,26:57:99:112,0,772 0/1:37,17:54:99:107,0,1035 0/1:57,49:106:99:258,0,1840 0/1:49,52:101:99:360,0,1576 0/1:71,33:104:40.21:40,0,2335 0/1:55,46:101:99:131,0,1584 0/1:51,41:92:99:139,0,1600 0/0:52,24:76:58.67:0,59,1619 0/1:36,26:62:99:197,0,1011 0/1:29,23:53:99:124,0,880 0/1:40,21:61:55.77:56,0,1220 0/1:36,22:58:43.83:44,0,938 0/1:28,15:43:32.22:32,0,843 0/1:98,61:159:99:211,0,3061 0/1:18,20:39:99:206,0,524 0/1:36,20:56:56.59:57,0,1031 0/1:33,25:58:99:115,0,928 0/1:37,20:58:99:249,0,893 0/0:51,27:78:85.49:0,85,1438 0/1:31,24:55:99:165,0,997 0/0:29,15:44:23.59:0,24,810 0/1:76,55:131:99:248,0,2551 0/1:56,38:95:99:126,0,1801 0/0:59,33:92:79.96:0,80,1943 0/1:55,32:88:81.47:81,0,1573 0/1:24,17:41:71.65:72,0,729 0/1:40,24:64:53.82:54,0,1216 0/1:32,18:50:61.76:62,0,1039 0/0:32,15:47:59.68:0,60,1051 0/1:26,16:42:97.06:97,0,705 0/1:40,19:59:48.24:48,0,1015 0/1:29,15:44:60.73:61,0,732 0/0:34,14:48:3.89:0,4,1062 0/1:35,18:53:59.51:60,0,1036 0/1:37,25:62:48.90:49,0,1047 0/1:41,28:69:99:155,0,1155 0/1:32,19:52:76.84:77,0,941 0/1:36,21:57:80.87:81,0,1051 0/1:31,20:51:53.11:53,0,961 0/1:35,17:52:99:131,0,997 0/1:28,20:48:99:134,0,822 1 227920103 . G A 5894.70 . 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G A 1715.12 . AC=4;AF=0.048;AN=84;BaseQRankSum=-7.163;DP=1922;Dels=0.00;FS=4.349;HRun=2;HaplotypeScore=1.3430;InbreedingCoeff=-0.0500;MQ=59.07;MQ0=1;MQRankSum=-0.376;QD=9.86;ReadPosRankSum=-1.826 GT:AD:DP:GQ:PL 0/0:32,0:32:84.27:0,84,1070 0/0:20,0:20:57.17:0,57,695 0/0:29,0:29:78.24:0,78,983 0/0:84,0:84:99:0,241,3220 0/0:76,0:76:99:0,214,2829 0/0:60,0:60:99:0,178,2371 0/0:54,0:54:99:0,147,1997 0/0:60,0:60:99:0,172,2251 0/0:38,0:38:99:0,108,1341 0/0:28,0:28:81.24:0,81,991 0/0:31,0:31:90.28:0,90,1125 0/0:35,0:35:96.30:0,96,1206 0/0:24,0:24:69.19:0,69,830 0/0:40,0:40:99:0,117,1441 0/0:91,0:92:99:0,256,3177 0/0:31,0:31:87.27:0,87,1082 0/0:25,0:25:72.23:0,72,903 0/0:25,0:25:75.24:0,75,942 0/0:55,0:55:99:0,153,1888 0/0:84,0:84:99:0,244,3043 0/0:52,0:53:99:0,141,1741 0/0:56,0:56:99:0,156,1941 0/0:92,0:92:99:0,253,3346 0/0:44,0:44:99:0,123,1612 0/0:55,0:55:99:0,154,2064 0/0:57,0:57:99:0,166,2139 0/0:33,0:33:93.28:0,93,1154 0/0:32,0:32:96.29:0,96,1172 0/0:31,0:31:87.25:0,87,1102 0/0:29,0:29:87.28:0,87,1096 0/0:45,0:45:99:0,123,1550 0/1:44,25:69:99:699,0,1278 0/0:51,0:51:99:0,150,1844 0/0:36,0:36:99:0,102,1259 0/0:39,0:39:99:0,105,1287 0/0:42,0:42:99:0,120,1491 0/0:52,0:52:99:0,144,1768 0/1:14,14:28:99:382,0,427 0/0:36,0:36:99:0,102,1277 0/1:20,15:35:99:371,0,613 0/0:42,0:42:99:0,117,1420 0/1:28,14:42:99:350,0,913 1 227920314 . C T 477.71 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.485;DP=1889;Dels=0.00;FS=3.459;HRun=0;HaplotypeScore=1.0974;InbreedingCoeff=-0.0120;MQ=59.00;MQ0=0;MQRankSum=0.062;QD=11.65;ReadPosRankSum=1.471 GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,102,1159 0/0:31,0:31:93.21:0,93,1012 0/0:26,0:26:78.20:0,78,873 0/0:56,0:57:99:0,166,2007 0/0:44,0:44:99:0,126,1607 0/0:51,0:51:99:0,150,1808 0/0:35,0:35:96.29:0,96,1210 0/0:37,0:37:99:0,105,1295 0/0:27,0:27:81.22:0,81,914 0/0:28,0:28:81.21:0,81,900 0/0:32,0:32:93.23:0,93,1024 0/0:35,0:35:99:0,102,1127 0/0:32,0:32:93.24:0,93,1021 0/0:37,0:37:99:0,105,1173 0/0:118,0:118:99:0,340,3801 0/1:23,18:41:99:524,0,668 0/0:37,0:37:99:0,108,1230 0/0:39,0:39:99:0,117,1292 0/0:74,0:74:99:0,211,2335 0/0:80,0:80:99:0,220,2457 0/0:69,0:69:99:0,193,2209 0/0:36,0:36:99:0,108,1214 0/0:76,0:76:99:0,217,2662 0/0:28,0:28:84.26:0,84,1021 0/0:35,0:35:99:0,102,1237 0/0:44,0:44:99:0,129,1577 0/0:30,0:30:87.20:0,87,967 0/0:34,0:34:99:0,102,1118 0/0:40,0:40:99:0,114,1276 0/0:44,0:44:99:0,132,1447 0/0:38,0:38:99:0,111,1233 0/0:64,0:64:99:0,171,1964 0/0:53,0:53:99:0,156,1731 0/0:43,0:43:99:0,117,1325 0/0:42,0:42:99:0,123,1367 0/0:47,0:47:99:0,138,1549 0/0:65,0:65:99:0,192,2161 0/0:49,0:49:99:0,144,1618 0/0:42,0:42:99:0,123,1351 0/0:41,0:41:99:0,117,1318 0/0:31,0:31:90.23:0,90,1004 0/0:42,0:42:99:0,123,1384 1 227920357 . C T 5155.64 . AC=9;AF=0.107;AN=84;BaseQRankSum=7.524;DP=1864;Dels=0.00;FS=7.544;HRun=0;HaplotypeScore=0.9816;InbreedingCoeff=-0.1200;MQ=58.75;MQ0=0;MQRankSum=-0.354;QD=14.40;ReadPosRankSum=-2.446 GT:AD:DP:GQ:PL 0/0:35,0:35:90.22:0,90,1052 0/0:37,0:37:99:0,105,1195 0/0:40,0:40:99:0,105,1247 0/0:56,0:56:99:0,144,1802 0/0:44,0:44:99:0,120,1492 0/1:21,19:40:99:559,0,628 0/0:47,0:47:99:0,123,1511 0/1:28,12:40:99:322,0,758 0/1:21,13:34:99:378,0,565 0/1:4,21:25:49.82:702,0,50 0/0:36,0:36:99:0,108,1218 0/0:31,0:31:87.22:0,87,1001 0/0:34,0:34:99:0,102,1134 0/0:51,0:51:99:0,150,1756 0/0:123,0:123:99:0,325,3768 0/0:37,0:37:99:0,105,1185 0/0:46,0:46:99:0,123,1460 0/0:42,0:42:99:0,105,1240 0/0:74,0:74:99:0,202,2321 0/0:72,0:72:99:0,199,2297 0/0:71,0:71:99:0,187,2231 0/0:35,0:35:99:0,99,1140 0/0:71,0:71:99:0,193,2457 0/0:29,0:29:72.20:0,72,899 0/0:25,0:25:63.17:0,63,787 0/0:34,0:34:90.28:0,90,1153 0/0:31,0:31:90.24:0,90,1047 0/0:30,0:30:81.22:0,81,943 0/0:37,0:37:96.26:0,96,1119 0/0:34,0:34:84.23:0,84,1004 0/0:31,0:31:90.25:0,90,1050 0/1:30,30:60:99:847,0,804 0/0:56,0:56:99:0,153,1772 0/0:38,0:38:99:0,114,1286 0/0:42,0:42:99:0,120,1365 0/0:40,0:40:99:0,111,1291 0/0:70,1:71:99:0,156,2190 0/1:26,20:46:99:512,0,739 0/1:20,24:44:99:752,0,548 0/1:15,23:38:99:697,0,325 0/0:26,0:26:75.21:0,75,877 0/1:17,14:31:99:386,0,510 1 228003508 . G A 448.16 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.788;DP=772;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8380;InbreedingCoeff=-0.0327;MQ=58.80;MQ0=0;MQRankSum=1.026;QD=14.46;ReadPosRankSum=0.141 GT:AD:DP:GQ:PL 0/0:13,0:13:39.10:0,39,455 0/0:18,0:18:48.09:0,48,526 0/0:10,0:10:27.06:0,27,305 0/0:42,0:42:99:0,120,1494 0/0:42,0:43:99:0,120,1452 0/0:39,0:39:99:0,111,1348 0/0:15,0:15:42.13:0,42,541 0/0:22,1:23:23.21:0,23,695 0/0:10,0:10:27.08:0,27,318 0/0:8,0:8:21.04:0,21,236 0/0:10,0:10:30.06:0,30,341 0/0:14,0:15:42.10:0,42,468 0/0:5,0:5:15.01:0,15,147 0/0:8,0:8:24.03:0,24,256 0/0:60,0:60:99:0,147,1755 0/0:10,1:11:2.43:1,0,316 0/0:12,0:12:36.10:0,36,419 0/0:18,0:18:45.10:0,45,514 0/0:22,0:22:54.15:0,54,632 0/0:29,0:29:72.21:0,72,883 0/0:27,0:28:72.21:0,72,877 0/0:15,0:15:36.10:0,36,428 0/0:31,0:31:90.27:0,90,1102 0/0:10,0:10:30.09:0,30,366 0/0:21,0:21:57.18:0,57,726 0/0:20,0:20:45.14:0,45,582 0/0:16,0:16:45.12:0,45,519 0/0:11,0:11:30.07:0,30,345 0/0:13,0:13:36.10:0,36,420 0/1:6,12:18:99:337,0,145 0/1:7,6:13:99:173,0,182 0/0:19,0:19:57.15:0,57,640 0/0:14,0:14:36.09:0,36,433 0/0:9,0:9:27.08:0,27,327 0/0:7,0:7:15.04:0,15,179 0/0:11,0:11:30.09:0,30,362 0/0:23,0:23:60.14:0,60,692 0/0:14,0:14:36.08:0,36,395 0/0:27,0:27:75.14:0,75,856 0/0:12,0:12:36.10:0,36,420 0/0:10,0:10:27.06:0,27,304 0/0:18,0:19:51.14:0,51,597 1 228113046 . C T 1692.21 . AC=13;AF=0.155;AN=84;BaseQRankSum=-5.480;DP=423;Dels=0.00;FS=2.963;HRun=0;HaplotypeScore=0.3759;InbreedingCoeff=-0.1927;MQ=58.31;MQ0=0;MQRankSum=2.810;QD=12.17;ReadPosRankSum=-0.581 GT:AD:DP:GQ:PL 0/1:1,3:4:26.54:91,0,27 0/0:4,0:4:12.03:0,12,130 0/0:5,0:5:12.03:0,12,138 0/0:18,0:18:51.14:0,51,650 0/1:11,13:24:99:374,0,345 0/1:6,6:12:99:172,0,199 0/0:22,0:22:60.19:0,60,792 0/1:7,3:10:64.43:64,0,256 0/0:4,0:4:12.03:0,12,140 0/0:6,0:7:15.04:0,15,183 0/0:11,0:11:33.08:0,33,366 0/0:7,0:7:21.06:0,21,253 0/1:3,4:7:77.75:98,0,78 0/0:7,0:7:21.06:0,21,256 0/0:29,0:29:78.22:0,78,917 0/1:3,2:5:52.71:53,0,97 0/0:6,0:6:18.05:0,18,206 0/0:4,0:4:12.03:0,12,136 0/0:11,0:12:33.09:0,33,375 0/1:6,7:13:99:148,0,161 0/1:5,7:12:99:185,0,147 0/1:3,4:7:83.46:117,0,83 0/0:29,0:29:84.25:0,84,1078 0/0:10,0:10:27.09:0,27,367 0/1:5,8:13:99:241,0,156 0/0:12,0:12:36.11:0,36,452 0/0:4,0:4:12.03:0,12,139 0/0:5,0:5:12.04:0,12,160 0/0:6,0:6:15.05:0,15,187 0/1:7,5:12:99:118,0,192 0/0:7,0:8:18.03:0,18,193 0/0:18,0:18:42.10:0,42,530 0/0:7,0:7:21.05:0,21,236 0/0:5,0:5:15.03:0,15,156 0/0:8,0:8:21.06:0,21,261 0/0:9,0:9:27.08:0,27,323 0/1:7,4:11:99:100,0,222 0/1:6,3:9:79.51:80,0,185 0/0:7,0:7:21.04:0,21,239 0/0:7,0:7:21.06:0,21,248 0/0:9,0:9:24.07:0,24,285 0/0:4,0:4:12.04:0,12,151 1 228113163 . A G 2664.18 . AC=49;AF=0.628;AN=78;BaseQRankSum=-3.018;DP=179;Dels=0.02;FS=10.448;HRun=1;HaplotypeScore=1.0115;InbreedingCoeff=-0.0269;MQ=57.83;MQ0=0;MQRankSum=0.187;QD=16.97;ReadPosRankSum=-0.837 GT:AD:DP:GQ:PL 0/0:4,1:5:12.03:0,12,136 0/1:1,3:4:21.57:53,0,22 1/1:0,1:1:3.01:33,3,0 0/1:6,5:11:99:124,0,126 0/1:2,3:5:25.76:95,0,26 0/1:5,1:6:17.20:17,0,167 0/1:4,4:8:59.73:85,0,60 0/1:1,5:6:28.77:55,0,29 1/1:0,2:2:6.02:65,6,0 0/1:4,3:7:66.82:67,0,89 1/1:0,1:1:3.01:32,3,0 1/1:0,4:4:9.03:105,9,0 1/1:0,2:2:6.02:69,6,0 0/1:1,1:2:26.48:26,0,33 0/1:1,12:13:6.90:276,0,7 1/1:0,4:4:12.02:128,12,0 0/0:3,0:3:9:0,9,89 1/1:0,2:2:6.01:61,6,0 1/1:0,1:2:3.01:32,3,0 1/1:0,6:6:18.05:215,18,0 1/1:0,7:7:18.05:209,18,0 1/1:0,4:4:9.01:93,9,0 0/1:5,6:11:99:119,0,157 0/1:2,3:5:25.33:25,0,67 0/1:1,6:7:7.64:164,0,8 1/1:0,3:3:3.01:32,3,0 0/0:2,0:2:6.02:0,6,74 0/0:4,0:4:12.03:0,12,126 1/1:0,3:3:6.01:63,6,0 1/1:0,3:3:9:93,9,0 ./. 1/1:0,7:7:21.05:221,21,0 1/1:0,2:2:6.02:65,6,0 0/0:2,1:3:6.02:0,6,69 0/0:3,0:3:9.03:0,9,105 ./. 0/1:3,1:4:21.41:21,0,80 0/1:0,1:1:1.76:30,3,0 0/1:2,4:6:51.30:110,0,51 0/1:1,1:2:26.48:26,0,33 ./. 0/1:0,2:2:1.76:31,3,0 1 228238594 . A C 20.65 . AC=5;AF=0.060;AN=84;BaseQRankSum=-4.945;DP=688;Dels=0.00;FS=37.139;HRun=2;HaplotypeScore=0.3518;InbreedingCoeff=-0.0833;MQ=57.60;MQ0=0;MQRankSum=-0.211;QD=0.38;ReadPosRankSum=-3.255 GT:AD:DP:GQ:PL 0/0:6,10:16:18.06:0,18,219 0/0:7,2:9:18.05:0,18,207 0/0:6,1:7:9.03:0,9,108 0/0:12,5:17:27.07:0,27,319 0/0:8,13:22:24.06:0,24,285 0/0:6,14:20:12.04:0,12,155 0/0:7,5:12:21.06:0,21,240 0/0:12,15:27:36.08:0,36,421 0/1:5,5:10:39.16:39,0,153 0/1:5,3:8:20.48:20,0,90 0/0:8,5:13:24.08:0,24,297 0/0:14,1:15:33.09:0,33,388 0/0:6,4:10:15.03:0,15,166 0/0:9,6:15:24.05:0,24,271 0/0:26,16:42:72.21:0,72,863 0/0:10,3:13:1.97:2,0,306 0/0:9,9:18:27.08:0,27,332 0/0:6,3:9:15.05:0,15,181 0/0:11,6:17:30.09:0,30,359 0/0:15,6:21:36.11:0,36,442 0/1:10,4:14:23.04:23,0,278 0/0:8,8:16:21.04:0,21,228 0/0:24,23:48:69.21:0,69,850 0/0:8,13:21:15.05:0,15,182 0/0:10,6:16:30.08:0,30,362 0/0:14,8:22:39.06:0,39,434 0/0:6,1:7:15.05:0,15,179 0/0:6,2:8:3.01:0,3,33 0/1:4,7:11:13.60:14,0,134 0/1:5,6:11:16.51:17,0,126 0/0:13,5:18:27.08:0,27,323 0/0:13,11:24:39.11:0,39,455 0/0:18,14:32:51.14:0,51,596 0/0:4,6:10:12.04:0,12,140 0/0:7,8:15:18.05:0,18,213 0/0:9,6:15:18.05:0,18,212 0/0:4,5:9:12.02:0,12,128 0/0:11,4:15:33.10:0,33,403 0/0:11,4:15:27.08:0,27,318 0/0:10,5:15:30.09:0,30,347 0/0:5,6:11:12.03:0,12,138 0/0:10,4:14:27.07:0,27,306 1 228238594 . A AC 64.31 . 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C T 781.66 . 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T G 243.09 . 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C T 78750.54 . 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G C 46819.14 . 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G A 5913.88 . 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G A 4401.76 . AC=22;AF=0.262;AN=84;BaseQRankSum=9.780;DP=578;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.3976;InbreedingCoeff=0.0080;MQ=58.04;MQ0=0;MQRankSum=-0.064;QD=16.01;ReadPosRankSum=0.027 GT:AD:DP:GQ:PL 0/0:13,0:13:39.10:0,39,433 0/0:11,0:11:27.07:0,27,311 0/0:16,0:16:48.13:0,48,535 0/0:18,0:18:51.15:0,51,598 0/1:9,9:18:99:213,0,260 0/0:11,0:11:33.09:0,33,376 0/0:11,0:11:30.09:0,30,361 0/0:14,0:14:36.10:0,36,437 0/0:10,0:10:24.07:0,24,287 0/0:12,0:12:36.09:0,36,395 0/1:1,2:3:22.52:67,0,23 0/1:6,1:7:16.77:17,0,164 0/1:2,3:5:49.94:95,0,50 0/0:11,0:11:33.08:0,33,354 0/1:21,21:42:99:505,0,548 0/1:13,7:20:99:188,0,364 0/0:13,0:13:36.10:0,36,410 0/1:1,5:6:14.45:158,0,14 0/0:23,0:23:66.13:0,66,695 0/1:12,13:25:99:369,0,309 0/1:12,9:21:99:204,0,301 0/1:5,7:12:99:220,0,102 0/0:16,0:16:48.15:0,48,578 0/1:4,8:12:99:253,0,101 0/1:6,7:13:99:220,0,161 1/1:0,9:9:27.09:341,27,0 0/0:13,0:13:39.11:0,39,452 0/0:7,0:7:21.06:0,21,232 0/0:13,0:13:30.08:0,30,358 1/1:0,14:14:42.13:512,42,0 0/1:2,7:9:49.29:227,0,49 0/1:11,8:19:99:205,0,272 1/1:0,3:3:9.03:111,9,0 0/0:9,0:9:27.07:0,27,300 0/0:12,0:12:36.08:0,36,387 0/0:10,0:10:30.06:0,30,319 0/1:11,11:22:99:326,0,273 0/1:9,6:15:99:171,0,233 0/0:13,0:13:36.09:0,36,388 0/0:12,0:12:33.09:0,33,378 0/0:14,0:14:39.07:0,39,421 0/0:21,0:21:51.12:0,51,583 1 228494790 . G A 15102.95 . AC=35;AF=0.417;AN=84;BaseQRankSum=7.452;DP=1213;Dels=0.00;FS=1.225;HRun=0;HaplotypeScore=1.1618;InbreedingCoeff=-0.1297;MQ=58.86;MQ0=0;MQRankSum=-1.268;QD=17.16;ReadPosRankSum=2.471 GT:AD:DP:GQ:PL 1/1:0,27:27:69.19:831,69,0 1/1:0,20:20:54.14:643,54,0 0/1:13,6:19:99:146,0,375 1/1:0,54:54:99:1691,141,0 0/1:12,26:38:99:755,0,249 0/0:36,0:36:93.24:0,93,1054 0/1:21,13:34:99:274,0,565 0/0:27,0:27:63.17:0,63,750 1/1:0,12:12:33.09:385,33,0 0/1:9,11:20:99:326,0,242 0/1:14,9:23:99:226,0,367 1/1:0,14:14:42.13:502,42,0 0/1:10,12:22:99:335,0,244 0/1:8,18:26:99:539,0,185 0/1:47,34:81:99:961,0,1241 0/0:30,0:31:78.21:0,78,908 0/1:8,12:20:99:366,0,193 0/0:19,0:19:36.10:0,36,423 0/1:23,19:43:99:503,0,503 0/1:25,30:56:99:858,0,692 0/1:13,19:32:99:540,0,320 0/1:13,23:36:99:649,0,306 0/1:29,25:54:99:748,0,829 0/0:21,0:21:54.09:0,54,583 0/0:31,1:32:55.47:0,55,1036 0/0:26,0:26:66.15:0,66,773 0/0:20,0:20:54.15:0,54,623 0/0:26,0:26:69.19:0,69,817 0/1:11,15:26:99:420,0,249 0/0:14,1:15:10.75:0,11,444 0/0:14,0:14:39.09:0,39,434 0/1:34,26:60:99:696,0,736 0/0:30,0:30:87.17:0,87,949 0/1:11,2:13:39.47:39,0,292 0/1:7,16:23:99:515,0,167 1/1:0,24:24:69.21:840,69,0 0/0:36,0:36:90.25:0,90,1038 0/1:8,11:19:99:209,0,178 0/1:11,9:20:99:244,0,289 0/1:9,8:17:99:178,0,272 0/1:12,13:25:99:373,0,268 0/1:12,10:22:99:310,0,307 1 228504472 . T C 11042.89 . AC=56;AF=0.667;AN=84;BaseQRankSum=-6.835;DP=542;Dels=0.00;FS=7.056;HRun=0;HaplotypeScore=0.6556;InbreedingCoeff=0.0232;MQ=58.42;MQ0=0;MQRankSum=0.009;QD=22.54;ReadPosRankSum=-0.878 GT:AD:DP:GQ:PL 1/1:0,10:10:30.07:330,30,0 1/1:0,7:7:18.05:209,18,0 0/1:5,7:12:99:193,0,144 1/1:0,37:37:99:1201,99,0 1/1:0,25:26:63.18:751,63,0 0/0:18,0:18:51.16:0,51,651 0/1:8,6:14:99:169,0,219 0/0:17,0:17:45.14:0,45,554 1/1:0,10:10:30.06:337,30,0 0/1:4,4:8:99:108,0,120 1/1:0,5:5:15.04:164,15,0 1/1:0,7:7:21.05:224,21,0 1/1:0,9:9:27.07:301,27,0 0/1:3,3:6:83.10:83,0,88 1/1:0,34:34:90.24:1038,90,0 0/1:6,6:12:99:138,0,159 0/1:6,2:8:39.96:40,0,191 0/1:4,1:5:21.94:22,0,120 0/1:7,7:14:99:188,0,142 1/1:0,20:20:51.12:584,51,0 1/1:0,27:27:63.18:760,63,0 1/1:0,12:12:30.08:346,30,0 0/1:11,6:17:99:174,0,275 0/1:5,2:7:18.07:18,0,167 0/1:19,11:30:99:284,0,439 1/1:0,12:12:27.06:299,27,0 0/0:3,0:3:9.03:0,9,103 0/0:5,0:5:15.05:0,15,187 0/1:2,4:6:50.89:88,0,51 1/1:0,12:12:36.07:391,36,0 0/1:10,2:12:24.57:25,0,327 1/1:0,21:21:54.14:614,54,0 1/1:0,21:21:57.16:662,57,0 1/1:0,4:4:12.04:141,12,0 0/1:3,4:7:83.54:110,0,84 1/1:0,10:10:30.07:326,30,0 0/1:11,8:19:99:189,0,321 1/1:0,8:8:24.06:263,24,0 0/0:9,0:9:24.06:0,24,272 0/1:1,2:3:28.80:46,0,29 0/1:1,5:6:18.93:149,0,19 0/1:9,3:12:78.65:79,0,265 1 228504507 . G T 63.42 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.950;DP=460;Dels=0.00;FS=5.206;HRun=1;HaplotypeScore=0.4049;InbreedingCoeff=0.4335;MQ=58.37;MQ0=0;MQRankSum=0.002;QD=7.93;ReadPosRankSum=-0.610 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,174 0/0:6,0:6:15.05:0,15,191 0/0:11,0:11:30.09:0,30,380 0/0:24,0:24:66.22:0,66,891 0/0:18,0:18:48.16:0,48,647 0/0:18,0:18:48.16:0,48,653 0/0:10,0:10:30.09:0,30,376 0/0:19,0:19:51.15:0,51,659 0/0:8,0:8:24.08:0,24,307 0/0:6,0:6:18.06:0,18,230 0/0:4,0:4:12.04:0,12,148 0/0:5,0:5:12.04:0,12,157 0/0:12,0:12:27.09:0,27,354 0/0:10,0:10:30.09:0,30,376 0/0:32,0:32:75.21:0,75,973 0/0:9,0:9:24.08:0,24,301 0/0:7,1:8:21.06:0,21,251 0/0:3,0:3:9.03:0,9,114 0/0:11,0:11:30.06:0,30,349 0/0:19,0:19:45.14:0,45,580 0/0:19,0:19:48.15:0,48,622 0/0:8,0:8:21.07:0,21,277 0/0:17,0:17:45.15:0,45,599 0/1:0,2:2:0.97:76,6,0 0/0:21,0:21:54.14:0,54,679 0/1:4,2:6:55.87:56,0,138 0/0:4,0:4:6.02:0,6,75 0/0:9,0:9:27.08:0,27,329 0/0:6,0:6:18.05:0,18,218 0/0:10,0:10:27.08:0,27,339 0/0:8,0:8:24.07:0,24,295 0/0:16,0:16:42.11:0,42,508 0/0:14,0:14:36.12:0,36,469 0/0:6,0:6:15.05:0,15,186 0/0:7,0:7:21.07:0,21,262 0/0:12,0:12:30.09:0,30,375 0/0:18,1:19:48.13:0,48,596 0/0:7,0:7:15.05:0,15,187 0/0:9,0:9:24.07:0,24,297 0/0:5,0:5:12.04:0,12,146 0/0:8,0:8:21.07:0,21,274 0/0:9,0:9:27.08:0,27,336 1 228504591 . C A 1878.41 . AC=20;AF=0.244;AN=82;BaseQRankSum=7.098;DP=227;Dels=0.00;FS=1.260;HRun=1;HaplotypeScore=0.1968;InbreedingCoeff=-0.0015;MQ=57.21;MQ0=0;MQRankSum=-0.435;QD=15.78;ReadPosRankSum=-0.006 GT:AD:DP:GQ:PL 0/0:4,0:4:12.03:0,12,138 0/0:5,0:5:15.02:0,15,152 0/0:5,0:5:12.03:0,12,139 0/0:7,0:7:21.05:0,21,228 0/1:4,5:9:79.94:139,0,80 0/0:4,0:4:12.04:0,12,145 0/0:6,0:6:15.04:0,15,165 0/0:4,0:4:12.04:0,12,144 0/0:4,0:4:12.01:0,12,124 0/0:3,0:3:9.01:0,9,89 0/0:2,0:2:6.02:0,6,69 0/1:1,0:1:1.76:0,3,33 0/1:2,2:4:51.87:63,0,52 0/0:1,0:1:3.01:0,3,33 0/1:5,8:13:99:242,0,109 0/1:4,2:6:49.74:50,0,114 0/0:6,0:6:9.02:0,9,99 0/0:1,0:1:3.01:0,3,33 0/0:7,0:7:21.03:0,21,226 0/1:3,1:4:25.76:26,0,85 0/1:4,4:8:80.76:126,0,81 0/1:4,1:5:19.31:19,0,114 0/0:7,0:7:21.06:0,21,254 0/0:1,0:1:3.01:0,3,37 0/1:7,5:12:99:142,0,196 0/1:2,4:6:32.72:107,0,33 0/0:8,0:8:21.06:0,21,258 0/0:7,0:7:18.05:0,18,192 0/0:2,0:2:6.02:0,6,68 1/1:0,8:8:21.07:266,21,0 0/1:4,3:7:55:55,0,118 0/1:2,8:10:35.87:257,0,36 1/1:0,13:13:30.09:375,30,0 0/0:6,0:6:18.05:0,18,205 0/1:5,1:6:17.24:17,0,128 0/0:4,0:4:9.02:0,9,97 0/1:2,3:5:53.48:96,0,53 1/1:0,2:2:6.02:71,6,0 ./. 0/0:3,0:3:9.02:0,9,97 0/0:6,0:6:15.04:0,15,176 0/0:4,0:4:12.03:0,12,131 1 228504669 . G A 830.70 . AC=18;AF=0.237;AN=76;BaseQRankSum=-0.983;DP=138;Dels=0.00;FS=5.401;HRun=0;HaplotypeScore=1.0386;InbreedingCoeff=-0.1121;MQ=55.10;MQ0=0;MQRankSum=0.395;QD=11.70;ReadPosRankSum=-0.355 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,68 0/0:2,0:2:6.02:0,6,68 0/1:1,0:1:1.76:0,3,31 0/0:2,0:2:6.02:0,6,79 0/0:1,1:2:3.01:0,3,35 0/0:2,0:2:3.01:0,3,40 ./. 0/0:2,0:2:3.01:0,3,33 0/0:2,0:2:6.01:0,6,64 0/1:2,0:2:1.76:0,3,32 0/1:2,3:5:52.74:89,0,53 ./. 0/1:2,2:4:59.19:59,0,59 0/0:3,0:3:9.03:0,9,115 0/1:4,5:9:88.46:151,0,88 0/1:5,3:8:48.51:49,0,142 0/0:2,0:2:6.02:0,6,74 0/1:1,1:2:27.42:27,0,33 0/0:7,0:7:21.06:0,21,245 0/1:1,1:2:25.53:30,0,26 0/1:2,3:5:48.91:49,0,57 0/1:2,2:4:49.99:50,0,64 0/0:2,0:2:6.02:0,6,81 ./. 0/1:4,1:5:15.56:16,0,130 ./. 0/0:8,0:8:21.06:0,21,251 0/0:4,0:4:12.03:0,12,135 0/0:2,0:2:6.02:0,6,67 1/1:0,3:3:9.02:99,9,0 0/0:1,0:1:3.01:0,3,39 0/1:1,2:3:28.77:56,0,29 1/1:0,5:5:15.04:163,15,0 0/0:5,0:5:12.04:0,12,150 0/0:3,0:3:9.03:0,9,102 0/0:2,0:2:6.02:0,6,67 0/1:6,3:9:85.55:86,0,129 0/1:2,2:4:52.02:56,0,52 0/0:2,0:2:6.01:0,6,60 0/0:6,0:6:15.04:0,15,162 0/0:3,0:3:9.03:0,9,102 0/0:3,0:3:9.03:0,9,111 1 228504670 . C T 740.52 . AC=24;AF=0.316;AN=76;BaseQRankSum=2.829;DP=138;Dels=0.00;FS=1.767;HRun=0;HaplotypeScore=1.1401;InbreedingCoeff=0.0654;MQ=54.73;MQ0=0;MQRankSum=-1.337;QD=11.39;ReadPosRankSum=-0.161 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:68,6,0 1/1:0,1:1:3.01:38,3,0 0/0:1,0:1:3.01:0,3,33 1/1:0,2:2:6.02:72,6,0 0/1:1,1:2:1.76:34,3,0 0/0:2,0:2:6.01:0,6,65 ./. 0/0:2,0:2:6.01:0,6,63 1/1:0,2:2:6.01:64,6,0 0/1:1,1:2:29.23:29,0,31 0/1:3,2:5:52.75:53,0,83 ./. 0/1:2,2:4:48.13:58,0,48 0/0:3,0:3:9.02:0,9,98 0/1:6,4:10:99:104,0,177 0/0:8,0:8:21.06:0,21,249 0/0:2,0:2:6.01:0,6,63 0/0:3,0:3:9.02:0,9,95 0/0:7,0:7:21.05:0,21,227 0/1:1,1:2:26.48:26,0,26 0/1:5,2:7:18.40:18,0,112 0/1:3,1:4:24.95:25,0,83 0/1:1,1:2:30.11:33,0,30 ./. 0/0:5,0:5:15.03:0,15,166 ./. 0/0:7,0:7:21.05:0,21,228 0/0:3,0:3:9.02:0,9,96 0/1:0,1:2:1.76:33,3,0 0/0:3,0:3:9.02:0,9,95 0/0:1,0:1:3.01:0,3,32 0/1:2,1:3:28.77:29,0,60 0/0:5,0:5:12:0,12,117 0/0:5,0:5:15.04:0,15,162 0/0:2,0:2:6.02:0,6,77 1/1:0,2:2:6.02:67,6,0 0/0:9,0:9:21.06:0,21,256 0/1:2,2:4:49.14:56,0,49 0/0:2,0:2:6.02:0,6,74 0/1:3,3:6:58.89:81,0,59 0/1:2,1:3:24.41:24,0,60 0/0:3,0:3:9.02:0,9,98 1 228505204 . G A 5182.39 . AC=21;AF=0.250;AN=84;BaseQRankSum=10.420;DP=614;Dels=0.00;FS=16.213;HRun=0;HaplotypeScore=0.7879;InbreedingCoeff=0.0332;MQ=58.46;MQ0=0;MQRankSum=-0.146;QD=16.61;ReadPosRankSum=3.979 GT:AD:DP:GQ:PL 0/0:13,0:14:39.03:0,39,373 0/0:14,0:16:27.06:0,27,295 0/0:8,0:8:15.04:0,15,163 0/0:26,0:28:48.10:0,48,495 0/1:9,10:19:99:281,0,152 0/0:18,0:18:42.11:0,42,479 0/0:14,0:14:24.03:0,24,257 0/0:14,0:15:30.03:0,30,295 0/0:11,0:11:33.07:0,33,347 0/0:3,0:4:9.02:0,9,89 0/1:4,5:9:99:152,0,100 0/0:14,0:14:23.99:0,24,240 0/1:6,5:11:98.17:135,0,98 0/0:10,0:11:24.04:0,24,246 0/1:13,24:40:99:601,0,192 0/1:8,6:14:99:177,0,157 0/0:12,0:13:27.02:0,27,257 0/1:3,2:5:45.16:60,0,45 0/0:15,0:17:24.05:0,24,260 0/1:8,21:29:99:580,0,122 0/1:11,12:23:99:313,0,234 0/1:8,12:23:99:375,0,128 0/0:22,0:25:51.15:0,51,595 0/1:5,3:8:51.81:88,0,52 0/1:7,12:19:74.30:317,0,74 1/1:0,11:11:30.08:353,30,0 0/0:5,0:5:9.01:0,9,90 0/0:10,0:11:21.03:0,21,211 0/0:11,0:12:15.03:0,15,152 1/1:0,12:12:30.08:345,30,0 0/1:2,5:8:46.51:158,0,47 0/1:14,11:26:99:238,0,247 1/1:0,18:18:45.12:518,45,0 0/0:10,0:10:24.05:0,24,245 0/0:14,0:14:33.05:0,33,324 0/0:12,0:13:17.99:0,18,164 0/1:10,13:23:99:340,0,127 0/1:8,6:14:99:151,0,130 0/0:7,0:8:21.02:0,21,202 0/0:8,0:9:18.04:0,18,189 0/0:4,0:4:12.01:0,12,109 0/0:7,0:8:18.03:0,18,187 1 228505207 . G C 11.69 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.780;DP=755;Dels=0.00;FS=130.330;HRun=1;HaplotypeScore=1.1347;InbreedingCoeff=-0.0574;MQ=58.43;MQ0=0;MQRankSum=-0.568;QD=0.62;ReadPosRankSum=-4.591 GT:AD:DP:GQ:PL 0/0:12,6:18:2.85:0,0,328 0/0:13,5:18:2.72:1,0,279 0/0:8,0:8:18.06:0,18,223 0/0:25,9:34:45.13:0,45,541 0/0:19,9:28:39.12:0,39,502 0/0:17,6:23:39.09:0,39,469 0/0:15,6:21:2.66:0,3,368 0/0:14,3:17:23.11:0,23,275 0/0:12,4:16:27.07:0,27,315 0/0:4,0:4:3.01:0,3,36 0/0:8,0:8:24.07:0,24,288 0/0:14,3:17:27.07:0,27,325 0/0:9,0:9:24.07:0,24,278 0/0:12,3:15:0.47:0,0,300 0/0:40,9:49:90.27:0,90,1091 0/0:13,2:15:30.08:0,30,363 0/0:12,3:15:21.06:0,21,242 0/0:5,2:7:15.05:0,15,186 0/1:12,7:19:55.46:55,0,311 0/0:29,7:36:69.19:0,69,842 0/0:22,8:30:28.81:0,29,660 0/0:22,4:26:57.18:0,57,700 0/0:17,9:27:12.64:0,13,502 0/0:7,0:7:15.03:0,15,186 0/0:17,7:24:10.57:0,11,462 0/0:15,3:18:33.11:0,33,433 0/0:7,5:12:18.06:0,18,219 0/0:7,3:10:0.24:12,0,202 0/0:6,7:13:12.04:0,12,153 0/0:13,7:20:33.10:0,33,398 0/0:9,1:10:21.06:0,21,254 0/0:25,9:34:60.19:0,60,754 0/0:19,2:21:45.13:0,45,535 0/0:8,3:11:24.07:0,24,298 0/0:12,4:16:27.09:0,27,341 0/0:8,3:11:15.05:0,15,185 0/0:20,10:30:45.11:0,45,547 0/0:16,3:19:36.11:0,36,429 0/0:8,4:12:18.06:0,18,220 0/0:10,1:11:24.07:0,24,289 0/0:6,1:7:18.05:0,18,208 0/0:9,0:9:18.05:0,18,211 1 228505668 . C G 48074.77 . AC=56;AF=0.667;AN=84;BaseQRankSum=-2.619;DP=2157;Dels=0.00;FS=0.435;HRun=0;HaplotypeScore=1.8099;InbreedingCoeff=-0.0714;MQ=58.66;MQ0=0;MQRankSum=-0.204;QD=25.03;ReadPosRankSum=-0.236 GT:AD:DP:GQ:PL 1/1:0,32:32:81.25:1007,81,0 1/1:0,38:38:99:1254,99,0 0/1:15,18:33:99:537,0,446 1/1:0,114:114:99:3999,304,0 1/1:0,84:84:99:3232,244,0 0/0:84,0:84:99:0,238,3101 0/1:32,23:55:99:768,0,1050 0/0:78,0:78:99:0,211,2795 1/1:0,29:29:84.26:1048,84,0 0/1:22,24:46:99:663,0,639 1/1:0,33:33:96.29:1184,96,0 1/1:0,30:30:87.27:1080,87,0 1/1:0,27:27:78.24:969,78,0 0/1:20,16:36:99:511,0,587 1/1:0,114:115:99:3871,307,0 0/1:17,20:37:99:621,0,468 0/1:16,26:42:99:741,0,476 0/1:16,21:37:99:635,0,432 0/1:29,49:78:99:1346,0,745 1/1:0,77:77:99:2693,214,0 1/1:0,57:57:99:1788,144,0 1/1:0,59:59:99:1930,153,0 0/1:68,59:127:99:1862,0,2191 0/1:26,26:52:99:818,0,874 0/1:26,37:63:99:1090,0,755 1/1:0,37:37:99:1385,108,0 0/0:28,0:28:81.25:0,81,1002 0/0:46,0:46:99:0,123,1538 0/1:24,9:33:99:248,0,701 1/1:0,38:38:99:1332,108,0 0/1:24,20:44:99:614,0,700 1/1:0,62:62:99:2227,178,0 1/1:0,55:55:99:1961,153,0 0/1:17,21:38:99:622,0,517 0/1:13,16:29:99:478,0,402 1/1:0,46:46:99:1578,126,0 0/1:34,26:60:99:726,0,1005 1/1:0,39:39:99:1322,105,0 0/1:22,12:34:99:339,0,687 0/1:12,23:35:99:743,0,297 0/1:21,14:35:99:305,0,693 0/1:16,18:34:99:550,0,441 1 228505699 . T C 38247.74 . AC=56;AF=0.667;AN=84;BaseQRankSum=-8.834;DP=2762;Dels=0.00;FS=8.298;HRun=0;HaplotypeScore=5.6282;InbreedingCoeff=-0.0714;MQ=58.37;MQ0=0;MQRankSum=2.564;QD=15.84;ReadPosRankSum=-2.416 GT:AD:DP:GQ:PL 1/1:0,45:47:99:1211,111,0 1/1:0,54:58:99:1227,114,0 0/1:17,22:45:99:432,0,444 1/1:0,135:159:99:3520,304,0 1/1:0,101:112:99:2508,223,0 0/0:79,2:125:99:0,186,2217 0/1:23,32:75:99:613,0,510 0/0:89,0:126:99:0,226,2577 1/1:0,35:37:66.14:713,66,0 0/1:20,18:49:99:363,0,531 1/1:0,27:33:69.12:745,69,0 1/1:0,38:45:99:1144,105,0 1/1:0,30:34:63.14:686,63,0 0/1:15,14:44:99:293,0,400 1/1:1,118:143:99:2917,268,0 0/1:11,16:40:99:331,0,280 0/1:17,18:45:99:252,0,474 0/1:18,19:49:99:397,0,497 0/1:24,36:81:99:853,0,614 1/1:0,84:93:99:2222,198,0 1/1:0,66:72:99:1677,150,0 1/1:1,68:76:99:1733,128,0 0/1:58,61:177:99:1240,0,1468 0/1:23,32:77:99:721,0,588 0/1:29,34:82:99:686,0,687 1/1:0,40:48:99:1250,108,0 0/0:25,0:34:66.19:0,66,777 0/0:41,0:62:99:0,114,1331 0/1:13,13:31:99:304,0,390 1/1:0,44:50:93.17:1003,93,0 0/1:16,22:52:99:397,0,450 1/1:0,92:95:99:2269,196,0 1/1:0,62:68:99:1557,141,0 0/1:12,21:45:99:461,0,291 0/1:17,9:33:99:160,0,449 1/1:1,37:41:90.23:1009,90,0 0/1:21,26:63:99:587,0,531 1/1:0,46:57:99:1183,108,0 0/1:11,15:33:99:339,0,250 0/1:10,22:38:99:392,0,265 0/1:12,19:43:99:381,0,336 0/1:13,20:45:99:472,0,288 1 228505739 . G A 26946.84 . AC=21;AF=0.250;AN=84;BaseQRankSum=5.913;DP=3413;Dels=0.00;FS=2.380;HRun=0;HaplotypeScore=2.1640;InbreedingCoeff=0.0476;MQ=58.53;MQ0=1;MQRankSum=7.305;QD=17.00;ReadPosRankSum=0.945 GT:AD:DP:GQ:PL 0/0:77,0:77:99:0,205,2371 0/0:53,0:53:99:0,141,1687 0/0:57,0:57:99:0,159,1883 0/0:179,0:179:99:0,484,6025 0/1:66,54:120:99:1518,0,1866 0/0:138,0:138:99:0,340,4268 0/0:100,0:100:99:0,241,3064 0/0:142,0:144:99:0,340,4327 0/0:56,0:56:99:0,150,1786 0/0:44,0:44:99:0,126,1462 0/1:22,27:50:99:800,0,585 0/0:53,0:53:99:0,156,1798 0/1:20,22:42:99:635,0,529 0/0:59,0:59:99:0,153,1744 0/1:80,104:184:99:2937,0,2009 0/1:20,35:55:99:968,0,495 0/0:65,0:65:99:0,171,2018 0/1:28,28:56:99:815,0,740 0/0:101,1:103:99:0,242,3156 0/1:70,69:140:99:1942,0,1640 0/1:47,49:97:99:1379,0,1165 0/1:38,35:73:99:879,0,1007 0/0:193,0:193:99:0,521,6486 0/1:52,42:94:99:1170,0,1375 0/1:54,54:108:99:1521,0,1346 1/1:0,73:73:99:2436,193,0 0/0:39,0:39:99:0,108,1279 0/0:58,0:58:99:0,159,1870 0/0:40,0:40:99:0,114,1294 1/1:1,62:63:99:2043,135,0 0/1:28,32:60:99:819,0,823 0/1:45,74:120:99:1940,0,1108 1/1:1,81:82:99:2786,204,0 0/0:58,0:58:99:0,162,1888 0/0:50,1:51:99:0,105,1538 0/0:50,0:50:99:0,132,1592 0/1:61,57:118:99:1541,0,1487 0/1:23,27:50:99:816,0,557 0/0:48,0:49:99:0,144,1625 0/0:58,0:58:99:0,168,1926 0/0:50,0:50:99:0,129,1530 0/0:54,0:54:99:0,144,1698 1 228540669 . C G 6.55 . AC=3;AF=0.047;AN=64;BaseQRankSum=-2.484;DP=133;Dels=0.03;FS=23.515;HRun=3;HaplotypeScore=1.0905;InbreedingCoeff=-0.0117;MQ=56.90;MQ0=0;MQRankSum=1.932;QD=0.55;ReadPosRankSum=-3.410 GT:AD:DP:GQ:PL ./. 0/0:3,1:4:9.03:0,9,111 0/0:2,0:2:6.02:0,6,76 0/0:4,2:6:9.03:0,9,112 0/1:3,2:5:22.32:22,0,98 0/0:2,0:2:6.01:0,6,67 ./. 0/0:4,1:5:6.02:0,6,77 0/0:2,0:2:6.02:0,6,70 0/0:4,1:6:12.04:0,12,145 0/0:1,0:1:3.01:0,3,31 0/1:2,1:3:19.62:20,0,69 ./. 0/0:2,0:2:2.99:0,3,23 0/0:7,2:9:18.05:0,18,207 0/1:1,3:4:1.76:33,3,0 ./. 0/0:1,1:2:3:0,3,25 0/0:1,1:2:3.01:0,3,36 0/0:4,0:4:6.01:0,6,60 0/0:4,1:5:7.27:0,7,113 0/0:2,0:2:6.02:0,6,70 ./. ./. ./. 0/0:3,0:3:6.01:0,6,65 ./. 0/0:2,1:3:6.01:0,6,67 0/0:3,1:4:6.02:0,6,73 0/0:4,2:6:12.04:0,12,145 0/0:2,2:4:5.99:0,6,62 0/0:5,1:6:9.03:0,9,109 ./. 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,39 0/0:1,2:3:3.01:0,3,37 0/0:2,2:4:3.01:0,3,36 ./. 0/0:2,0:2:6.02:0,6,77 0/0:4,1:5:12.04:0,12,144 0/0:2,2:4:3.01:0,3,35 0/0:5,0:5:12.03:0,12,139 1 228564884 . G A 138.99 . AC=3;AF=0.036;AN=84;BaseQRankSum=-0.768;DP=324;Dels=0.00;FS=3.772;HRun=0;HaplotypeScore=0.4530;InbreedingCoeff=0.2837;MQ=58.85;MQ0=0;MQRankSum=0.285;QD=8.18;ReadPosRankSum=0.294 GT:AD:DP:GQ:PL 0/0:9,0:9:21.02:0,21,210 0/0:5,0:5:9.03:0,9,103 0/0:5,0:5:14.99:0,15,144 0/0:6,0:6:15.05:0,15,192 0/0:12,0:12:33.09:0,33,394 0/0:9,0:9:24.05:0,24,273 0/0:7,0:7:18.04:0,18,217 0/0:7,0:7:18.05:0,18,217 0/1:5,1:6:23.56:24,0,104 0/1:2,2:5:40.33:40,0,63 0/0:6,0:6:18.03:0,18,179 0/0:2,0:2:6.02:0,6,78 0/1:1,5:6:0.13:163,15,0 0/0:12,0:13:24.08:0,24,312 0/0:26,0:26:72.18:0,72,793 0/0:14,0:14:30.08:0,30,335 0/0:10,0:10:27.07:0,27,317 0/0:5,0:6:15.04:0,15,171 0/0:13,0:14:33.08:0,33,362 0/0:10,0:10:27.08:0,27,321 0/0:5,0:6:9.03:0,9,111 0/0:11,0:11:30.08:0,30,337 0/0:11,0:11:27.09:0,27,350 0/0:5,0:5:15.01:0,15,155 0/0:11,0:11:30.09:0,30,378 0/0:3,0:3:9.03:0,9,115 0/0:4,0:4:12.03:0,12,130 0/0:5,0:5:12.03:0,12,137 0/0:6,0:6:15.02:0,15,154 0/0:4,0:4:9.03:0,9,110 0/0:6,0:6:15.04:0,15,176 0/0:13,0:13:33.05:0,33,355 0/0:9,0:9:24.05:0,24,276 0/0:4,0:4:9.02:0,9,98 0/0:5,0:5:12.03:0,12,134 0/0:6,0:6:15.05:0,15,185 0/0:14,0:15:27.07:0,27,295 0/0:7,0:7:18.05:0,18,212 0/0:6,0:6:12.03:0,12,132 0/0:1,0:1:3:0,3,29 0/0:5,0:5:9.01:0,9,88 0/0:3,0:3:9.01:0,9,94 1 228565208 . C T 196.01 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.828;DP=1152;Dels=0.00;FS=2.137;HRun=0;HaplotypeScore=1.0289;InbreedingCoeff=-0.0123;MQ=59.11;MQ0=0;MQRankSum=-0.087;QD=10.32;ReadPosRankSum=-0.047 GT:AD:DP:GQ:PL 0/0:25,0:25:75.22:0,75,916 0/0:22,0:22:60.18:0,60,744 0/0:19,0:19:57.18:0,57,709 0/0:32,0:34:90.29:0,90,1161 0/0:39,0:39:99:0,99,1306 0/0:17,0:17:45.15:0,45,591 0/0:6,0:6:18.06:0,18,239 0/0:17,0:17:48.15:0,48,616 0/0:21,0:21:57.18:0,57,716 0/0:24,0:24:69.21:0,69,846 0/0:19,0:19:51.16:0,51,641 0/0:30,0:30:87.26:0,87,1057 0/0:13,0:13:36.11:0,36,447 0/0:24,0:24:66.18:0,66,783 0/0:76,0:77:99:0,214,2642 0/0:25,0:25:72.22:0,72,884 0/0:28,0:29:78.24:0,78,964 0/0:23,0:23:63.20:0,63,797 0/0:39,0:39:99:0,108,1330 0/0:57,0:57:99:0,144,1794 0/0:43,0:43:99:0,108,1341 0/0:23,0:23:69.20:0,69,821 0/0:34,0:34:96.29:0,96,1243 0/0:8,0:8:21.07:0,21,269 0/0:15,0:15:39.13:0,39,526 0/0:21,0:21:54.17:0,54,717 0/0:26,0:26:72.21:0,72,869 0/0:28,0:28:78.24:0,78,980 0/0:21,0:21:63.20:0,63,790 0/0:25,0:26:66.21:0,66,837 0/0:22,0:22:66.19:0,66,796 0/0:52,0:52:99:0,144,1825 0/0:34,0:34:96.29:0,96,1175 0/0:19,0:19:57.16:0,57,690 0/1:11,8:19:99:242,0,333 0/0:25,0:25:69.21:0,69,865 0/0:60,0:61:99:0,168,2029 0/0:22,0:22:60.18:0,60,733 0/0:23,0:23:66.21:0,66,842 0/0:25,0:25:72.22:0,72,889 0/0:29,0:29:84.24:0,84,1017 0/0:16,0:16:36.12:0,36,475 1 228565329 . G A 1111.69 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.291;DP=2387;Dels=0.00;FS=6.621;HRun=0;HaplotypeScore=1.3096;InbreedingCoeff=-0.0244;MQ=58.98;MQ0=0;MQRankSum=0.875;QD=12.93;ReadPosRankSum=0.440 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,129,1600 0/0:44,0:44:99:0,129,1595 0/0:39,0:39:99:0,111,1426 0/0:67,0:67:99:0,190,2490 0/0:69,0:69:99:0,190,2487 0/0:37,0:37:99:0,102,1366 0/0:42,0:42:99:0,117,1495 0/0:38,0:38:99:0,108,1448 0/0:54,0:54:99:0,153,1917 0/0:54,0:54:99:0,150,1816 0/0:35,0:35:96.28:0,96,1186 0/0:47,0:47:99:0,129,1568 0/0:39,0:40:99:0,99,1250 0/0:37,0:37:99:0,108,1347 0/0:144,0:144:99:0,382,4738 0/0:39,0:39:99:0,111,1351 0/0:56,0:56:99:0,159,1967 0/0:48,0:48:99:0,129,1613 0/0:91,0:91:99:0,253,3028 0/0:92,0:92:99:0,256,3146 0/0:83,0:84:99:0,211,2625 0/0:68,0:68:99:0,187,2336 0/0:89,0:89:99:0,232,3039 0/1:19,17:36:99:492,0,586 0/0:54,0:54:99:0,138,1848 0/1:25,25:50:99:682,0,741 0/0:44,0:44:99:0,126,1540 0/0:61,0:61:99:0,159,1994 0/0:56,0:57:99:0,159,1980 0/0:44,0:44:99:0,117,1446 0/0:47,0:47:99:0,126,1534 0/0:95,0:95:99:0,256,3260 0/0:86,0:86:99:0,235,2922 0/0:41,1:42:90.88:0,91,1447 0/0:50,0:50:99:0,135,1645 0/0:51,0:51:99:0,147,1791 0/0:72,0:72:99:0,196,2365 0/0:39,0:39:99:0,108,1332 0/0:47,0:47:99:0,126,1552 0/0:54,0:54:99:0,144,1805 0/0:56,0:56:99:0,150,1839 0/0:40,0:40:99:0,111,1393 1 228588680 . A C 319.23 . AC=6;AF=0.071;AN=84;BaseQRankSum=-4.116;DP=356;Dels=0.00;FS=2.142;HRun=0;HaplotypeScore=0.2002;InbreedingCoeff=-0.0942;MQ=57.58;MQ0=0;MQRankSum=1.011;QD=8.40;ReadPosRankSum=-0.157 GT:AD:DP:GQ:PL 0/0:3,0:3:9.01:0,9,92 0/0:9,0:9:24.08:0,24,303 0/0:5,0:5:15.04:0,15,180 0/0:25,0:25:69.21:0,69,856 0/0:17,0:17:45.14:0,45,558 0/0:8,0:8:24.08:0,24,305 0/0:13,0:13:36.10:0,36,436 0/0:15,0:15:39.12:0,39,499 0/1:1,7:8:15.92:174,0,16 0/1:6,3:9:74.69:75,0,190 0/0:3,0:3:9.02:0,9,103 0/1:1,2:3:28.77:62,0,29 0/1:1,1:2:27.42:27,0,33 0/0:7,0:7:21.07:0,21,257 0/0:18,0:18:45.14:0,45,563 0/0:5,0:5:9.03:0,9,107 0/0:5,0:5:15.04:0,15,180 0/0:2,0:2:6.02:0,6,75 0/0:14,0:14:42.13:0,42,511 0/0:11,0:11:33.09:0,33,388 0/0:19,0:19:48.15:0,48,585 0/0:7,1:8:21.06:0,21,249 0/0:25,0:25:72.19:0,72,859 0/0:11,0:11:27.09:0,27,355 0/0:6,0:6:18.06:0,18,225 0/0:4,0:4:12.04:0,12,153 0/0:6,0:6:18.06:0,18,221 0/0:4,0:4:9.03:0,9,107 0/0:2,0:2:6.02:0,6,72 0/0:5,0:5:15.05:0,15,184 0/0:10,0:10:27.08:0,27,331 0/0:12,0:12:33.10:0,33,399 0/0:3,0:3:9.03:0,9,105 0/0:8,0:8:24.07:0,24,290 0/0:3,0:3:9.02:0,9,92 0/0:13,0:13:36.11:0,36,451 0/1:7,2:9:37.08:37,0,193 0/1:5,2:7:48.42:48,0,154 0/0:3,0:3:9.03:0,9,114 0/0:7,0:7:21.06:0,21,249 0/0:8,0:8:24.06:0,24,279 0/0:1,0:1:3.01:0,3,37 1 228588713 . G A 259.96 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.350;DP=499;Dels=0.00;FS=14.332;HRun=1;HaplotypeScore=0.2163;InbreedingCoeff=-0.0313;MQ=57.80;MQ0=0;MQRankSum=2.036;QD=17.33;ReadPosRankSum=0.547 GT:AD:DP:GQ:PL 0/0:10,0:10:30.07:0,30,332 0/0:15,0:16:39.09:0,39,423 0/0:5,0:5:15.04:0,15,164 0/0:27,0:27:66.17:0,66,826 0/0:24,0:24:63.19:0,63,782 0/0:11,0:11:30.10:0,30,393 0/0:17,0:17:45.11:0,45,535 0/0:21,0:21:57.17:0,57,688 0/0:12,0:12:33.09:0,33,388 0/0:11,0:11:33.08:0,33,372 0/0:2,0:2:6.02:0,6,69 0/0:6,0:6:18.05:0,18,199 0/0:6,0:6:18.03:0,18,189 0/0:7,0:7:21.04:0,21,216 0/0:36,0:36:99:0,105,1177 0/0:17,0:17:51.14:0,51,569 0/0:9,0:9:27.06:0,27,298 0/0:7,0:7:18.05:0,18,202 0/0:17,0:17:39.10:0,39,429 0/0:15,0:15:42.11:0,42,466 0/0:13,0:13:39.08:0,39,436 0/0:12,0:12:36.09:0,36,404 0/0:24,0:24:69.20:0,69,829 0/1:3,8:11:82.92:266,0,83 0/0:10,0:10:27.06:0,27,316 0/1:2,2:4:53.59:56,0,54 0/0:4,0:4:12.03:0,12,128 0/0:7,0:7:18.05:0,18,206 0/0:4,0:4:12.02:0,12,128 0/0:10,0:10:30.08:0,30,336 0/0:13,0:13:39.10:0,39,430 0/0:16,0:16:39.07:0,39,426 0/0:13,0:13:36.09:0,36,390 0/0:9,0:9:27.07:0,27,306 0/0:9,0:9:24.06:0,24,268 0/0:7,0:7:21.06:0,21,245 0/0:15,0:15:42.09:0,42,447 0/0:18,0:18:51.11:0,51,561 0/0:5,0:5:15.03:0,15,159 0/0:7,0:7:18.05:0,18,199 0/0:5,0:5:12.03:0,12,141 0/0:7,0:7:21.05:0,21,227 1 228871693 . C T 2062 . AC=10;AF=0.119;AN=84;BaseQRankSum=-8.401;DP=906;Dels=0.00;FS=3.738;HRun=1;HaplotypeScore=1.2413;InbreedingCoeff=-0.1359;MQ=59.35;MQ0=0;MQRankSum=-0.107;QD=11.46;ReadPosRankSum=-0.498 GT:AD:DP:GQ:PL 0/0:16,0:17:42.13:0,42,528 0/0:13,0:13:33.08:0,33,405 0/1:8,5:13:99:128,0,228 0/0:54,0:54:99:0,132,1746 0/0:57,0:57:99:0,135,1723 0/0:25,1:26:57.18:0,57,757 0/0:35,0:35:81.23:0,81,1048 0/0:27,1:28:72.21:0,72,909 0/0:14,0:15:39.10:0,39,484 0/1:10,4:14:85.16:85,0,241 0/0:15,0:15:33.11:0,33,425 0/0:12,0:12:36.10:0,36,432 0/1:6,12:19:88.02:307,0,88 0/1:11,10:21:99:270,0,308 0/0:29,0:30:81.25:0,81,1011 0/1:5,6:11:99:173,0,151 0/1:5,11:16:99:308,0,145 0/0:17,0:17:42.13:0,42,530 0/0:34,0:34:93.24:0,93,1111 0/0:26,0:26:69.17:0,69,832 0/1:16,13:29:99:325,0,433 0/1:17,12:29:99:281,0,441 0/0:64,0:64:99:0,150,1986 0/0:34,0:34:75.21:0,75,986 0/0:30,0:30:63.18:0,63,799 0/0:24,0:24:60.19:0,60,792 0/0:10,0:10:27.07:0,27,334 0/1:5,7:12:99:183,0,110 0/0:6,0:6:15.02:0,15,165 0/0:15,0:16:36.11:0,36,469 0/0:16,0:16:42.11:0,42,507 0/0:27,0:27:75.22:0,75,933 0/0:16,0:16:45.14:0,45,551 0/0:10,0:10:30.07:0,30,356 0/0:13,0:13:30.09:0,30,374 0/1:10,6:16:99:136,0,260 0/0:19,0:19:48.14:0,48,585 0/0:16,0:16:42.13:0,42,529 0/0:12,0:12:33.10:0,33,402 0/0:7,0:7:21.06:0,21,257 0/0:8,0:8:21.06:0,21,257 0/0:19,0:19:51.16:0,51,651 1 229461024 . C T 43070.65 . AC=30;AF=0.357;AN=84;BaseQRankSum=-2.648;DP=5581;DS;Dels=0.00;FS=0.108;HRun=0;HaplotypeScore=2.2315;InbreedingCoeff=0.1704;MQ=59.43;MQ0=0;MQRankSum=-0.377;QD=16.80;ReadPosRankSum=0.205 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2625,214,0 1/1:0,85:85:99:2732,220,0 1/1:2,89:91:99:2850,174,0 0/1:121,116:237:99:3188,0,3439 0/0:244,0:244:99:0,623,8114 0/0:239,0:240:99:0,635,8142 0/0:228,0:228:99:0,596,7661 0/0:204,1:205:99:0,491,6720 0/0:102,1:103:99:0,231,3109 0/1:50,45:95:99:1201,0,1275 0/1:52,53:105:99:1428,0,1342 0/0:127,0:128:99:0,325,3934 0/1:41,32:73:99:888,0,1139 0/0:108,0:108:99:0,286,3405 0/0:249,0:249:99:0,659,7695 0/0:71,0:71:99:0,205,2379 0/0:123,0:123:99:0,334,3914 1/1:1,81:82:99:2605,181,0 0/1:66,61:127:99:1721,0,1694 0/0:149,0:149:99:0,379,4626 0/0:138,1:139:99:0,331,4250 0/1:40,34:74:99:870,0,1007 0/1:144,101:245:99:2808,0,4135 0/0:213,0:213:99:0,539,6945 0/1:127,83:210:99:2280,0,3555 0/0:229,3:232:99:0,503,7375 0/1:40,28:68:99:822,0,1073 0/1:60,56:116:99:1468,0,1560 0/1:54,32:86:99:841,0,1517 1/1:0,102:102:99:3331,274,0 1/1:1,83:84:99:2781,199,0 0/0:167,0:167:99:0,409,4954 0/1:50,26:77:99:643,0,1280 0/0:104,2:106:99:0,247,3315 0/0:107,1:108:99:0,246,3291 0/0:121,0:121:99:0,319,3770 0/1:65,54:119:99:1426,0,1620 0/1:82,35:118:99:902,0,2201 0/0:83,0:83:99:0,226,2680 0/1:56,52:108:99:1457,0,1409 1/1:0,85:85:99:2874,241,0 0/1:45,50:95:99:1331,0,1191 1 229631734 . T C 8679.78 . AC=15;AF=0.179;AN=84;BaseQRankSum=-19.964;DP=2390;Dels=0.00;FS=0.522;HRun=0;HaplotypeScore=0.6506;InbreedingCoeff=0.1072;MQ=59.60;MQ0=0;MQRankSum=0.119;QD=16.16;ReadPosRankSum=-1.680 GT:AD:DP:GQ:PL 0/1:18,24:42:99:662,0,498 0/0:40,0:40:99:0,111,1355 0/0:46,0:46:99:0,135,1653 0/0:95,0:95:99:0,271,3344 0/0:98,0:98:99:0,283,3535 0/0:100,0:100:99:0,286,3601 0/0:88,0:88:99:0,250,3159 0/0:93,2:95:99:0,226,3266 0/0:65,0:65:99:0,190,2303 0/1:10,16:26:99:441,0,278 0/0:52,0:52:99:0,150,1839 0/1:17,18:35:99:478,0,485 0/1:20,16:36:99:418,0,568 0/1:20,19:39:99:489,0,610 0/0:149,0:149:99:0,400,4912 0/1:27,21:48:99:504,0,822 0/1:14,27:41:99:758,0,393 0/0:38,0:38:99:0,114,1380 0/0:76,0:76:99:0,196,2441 0/0:54,0:54:99:0,156,1918 0/1:32,25:57:99:672,0,909 1/1:0,38:38:99:1209,108,0 0/0:87,0:87:99:0,244,3048 0/0:73,0:73:99:0,217,2689 0/0:81,0:81:99:0,235,2929 0/0:89,0:89:99:0,247,3083 0/0:37,0:37:99:0,108,1332 0/1:17,32:49:99:873,0,482 0/0:36,0:36:99:0,108,1299 0/0:41,0:41:99:0,123,1489 0/0:44,0:44:99:0,123,1544 0/0:61,0:61:99:0,172,2133 0/0:47,0:47:99:0,132,1618 0/1:26,20:46:99:485,0,771 1/1:0,38:38:99:1197,105,0 0/0:35,0:35:99:0,102,1250 0/0:66,0:66:99:0,193,2353 0/1:23,19:42:99:494,0,704 0/0:41,0:41:99:0,123,1496 0/0:40,0:40:99:0,111,1361 0/0:38,1:39:83.74:0,84,1300 0/0:39,0:39:99:0,117,1414 1 229654053 . T C 1510.75 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.096;DP=3521;DS;Dels=0.00;FS=6.071;HRun=0;HaplotypeScore=0.7215;InbreedingCoeff=-0.0244;MQ=49.66;MQ0=183;MQRankSum=0.425;QD=10.95;ReadPosRankSum=-0.112 GT:AD:DP:GQ:PL 0/1:32,23:55:99:692,0,806 0/1:46,37:83:99:881,0,1278 0/0:53,0:53:99:0,141,1714 0/0:135,0:135:99:0,379,4618 0/0:119,0:119:99:0,316,3903 0/0:135,0:135:99:0,373,4723 0/0:114,0:114:99:0,313,3971 0/0:123,0:123:99:0,343,4221 0/0:64,0:64:99:0,150,1831 0/0:48,0:48:99:0,123,1484 0/0:53,0:53:99:0,144,1753 0/0:59,0:59:99:0,144,1743 0/0:67,0:67:99:0,177,2133 0/0:56,0:56:99:0,144,1746 0/0:215,0:215:99:0,548,6606 0/0:54,0:54:99:0,156,1857 0/0:66,0:66:99:0,171,2053 0/0:60,0:60:99:0,165,1982 0/0:86,0:86:99:0,223,2659 0/0:104,0:104:99:0,283,3459 0/0:91,0:92:99:0,244,3006 0/0:55,0:55:99:0,156,1840 0/0:158,0:158:99:0,424,5319 0/0:109,0:109:99:0,301,3783 0/0:98,0:98:99:0,286,3552 0/0:91,1:92:99:0,250,3081 0/0:68,0:68:99:0,190,2287 0/0:74,0:74:99:0,193,2337 0/0:64,0:64:99:0,171,2047 0/0:59,0:59:99:0,156,1851 0/0:47,0:47:99:0,126,1502 0/0:94,0:94:99:0,238,2956 0/0:75,0:75:99:0,202,2423 0/0:76,0:76:99:0,208,2524 0/0:73,0:73:99:0,184,2259 0/0:73,0:73:99:0,181,2173 0/0:97,0:97:99:0,247,2991 0/0:74,0:74:99:0,177,2087 0/0:78,0:78:99:0,220,2658 0/0:79,0:79:99:0,211,2487 0/0:66,0:66:99:0,178,2148 0/0:71,0:71:99:0,187,2241 1 229750114 . G C 873.27 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.509;DP=2874;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.1249;InbreedingCoeff=-0.0120;MQ=59.13;MQ0=1;MQRankSum=-0.357;QD=15.32;ReadPosRankSum=-0.969 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,150,1859 0/0:67,0:67:99:0,159,1951 0/0:38,1:39:99:0,108,1312 0/0:156,0:156:99:0,406,5203 0/0:123,0:123:99:0,340,4444 0/0:116,0:116:99:0,292,3875 0/0:59,0:59:99:0,162,2049 0/0:79,0:80:99:0,208,2723 0/0:53,0:53:99:0,141,1745 0/0:53,0:53:99:0,135,1671 0/0:48,0:48:99:0,135,1702 0/0:41,1:42:99:0,114,1367 0/0:43,0:43:99:0,114,1417 0/0:63,0:63:99:0,159,1987 0/0:168,1:171:99:0,463,5721 0/0:70,0:70:99:0,193,2347 0/1:20,37:57:99:919,0,606 0/0:40,0:40:99:0,111,1346 0/0:62,0:63:99:0,159,1944 0/0:111,0:111:99:0,295,3608 0/0:97,0:97:99:0,253,3116 0/0:62,0:62:99:0,172,2094 0/0:139,0:139:99:0,379,4973 0/0:58,0:59:99:0,147,1956 0/0:72,0:72:99:0,190,2439 0/0:72,0:72:99:0,193,2488 0/0:40,0:40:99:0,108,1332 0/0:39,0:39:99:0,111,1359 0/0:52,0:52:99:0,129,1560 0/0:54,0:54:99:0,150,1822 0/0:47,0:47:99:0,120,1489 0/0:91,0:91:99:0,241,3004 0/0:62,0:62:99:0,156,1954 0/0:45,0:45:99:0,123,1533 0/0:43,1:44:99:0,117,1487 0/0:61,0:61:99:0,168,2048 0/0:80,2:84:99:0,217,2687 0/0:49,0:49:99:0,138,1683 0/0:62,0:62:99:0,162,2011 0/0:46,0:46:99:0,120,1484 0/0:49,0:49:99:0,123,1492 0/0:40,0:40:99:0,111,1400 1 229790048 . A G 62033.51 . 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T C 5044.34 . 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G A 11205.21 . 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C T 1997.72 . 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A C 787.19 . 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T A 712.90 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.952;DP=3586;Dels=0.00;FS=1.583;HRun=2;HaplotypeScore=1.2241;InbreedingCoeff=-0.0120;MQ=59.59;MQ0=0;MQRankSum=1.284;QD=12.51;ReadPosRankSum=-1.927 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,159,1907 0/0:58,0:58:99:0,150,1825 0/0:48,0:48:99:0,135,1602 0/0:170,0:170:99:0,445,5425 0/0:154,0:154:99:0,400,4988 0/0:134,0:134:99:0,352,4431 0/0:128,0:128:99:0,334,4207 0/0:136,0:137:99:0,364,4494 0/0:71,0:71:99:0,193,2297 0/0:80,0:80:99:0,214,2560 0/0:53,0:53:99:0,150,1783 0/0:73,0:73:99:0,199,2377 0/0:47,0:47:99:0,117,1441 0/0:67,0:67:99:0,196,2352 0/0:212,0:212:99:0,554,6675 0/0:43,0:43:99:0,120,1422 0/0:50,0:50:99:0,129,1576 0/0:68,0:68:99:0,190,2276 0/0:105,0:105:99:0,268,3280 0/0:105,0:105:99:0,283,3441 0/0:92,0:92:99:0,232,2865 0/0:51,0:51:99:0,138,1679 0/0:151,0:151:99:0,400,4915 0/0:123,0:123:99:0,328,4043 0/0:167,0:167:99:0,445,5482 0/0:137,0:137:99:0,382,4673 0/0:39,0:39:99:0,105,1278 0/0:66,0:66:99:0,187,2216 0/0:54,0:54:99:0,150,1792 0/0:67,0:67:99:0,193,2296 0/0:53,0:53:99:0,150,1804 0/0:99,0:99:99:0,268,3264 0/0:57,0:57:99:0,153,1856 0/0:47,0:47:99:0,132,1598 0/1:30,27:57:99:759,0,858 0/0:61,0:61:99:0,162,1970 0/0:80,0:80:99:0,214,2608 0/0:57,0:57:99:0,156,1895 0/0:66,0:66:99:0,177,2098 0/0:74,0:74:99:0,208,2488 0/0:61,0:61:99:0,165,2000 0/0:67,0:67:99:0,187,2246 1 230810858 . T C 648.22 . 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A G 7349.03 . AC=15;AF=0.179;AN=84;BaseQRankSum=3.813;DP=1853;Dels=0.00;FS=2.826;HRun=1;HaplotypeScore=0.6021;InbreedingCoeff=-0.0551;MQ=59.37;MQ0=0;MQRankSum=-0.919;QD=14.30;ReadPosRankSum=0.188 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,117,1469 0/0:37,0:37:99:0,108,1350 0/0:32,0:32:93.29:0,93,1169 0/0:67,0:67:99:0,196,2506 0/0:61,0:61:99:0,172,2238 0/0:59,0:59:99:0,175,2305 0/0:42,0:42:99:0,114,1519 0/0:75,0:75:99:0,205,2679 0/0:37,0:37:99:0,108,1365 0/1:17,13:30:99:405,0,531 0/1:26,17:43:99:488,0,757 0/1:19,20:39:99:652,0,536 0/0:30,0:30:78.25:0,78,992 0/1:12,14:26:99:336,0,384 0/0:109,0:109:99:0,298,3789 0/0:30,0:30:87.27:0,87,1088 0/0:41,0:41:99:0,120,1507 0/0:43,0:43:99:0,123,1562 0/0:52,0:52:99:0,153,1946 0/0:65,0:65:99:0,187,2341 0/0:64,0:64:99:0,187,2325 0/0:39,0:39:99:0,111,1395 0/0:91,0:91:99:0,262,3409 0/1:28,17:45:99:566,0,812 0/1:28,28:56:99:934,0,905 0/0:39,0:39:99:0,111,1462 0/1:17,12:29:99:375,0,536 0/1:19,17:36:99:528,0,616 0/1:20,14:34:99:413,0,615 0/1:25,14:39:99:422,0,790 0/0:29,0:29:87.27:0,87,1084 0/0:41,0:41:99:0,111,1415 0/1:23,11:34:99:249,0,685 0/0:35,0:35:99:0,102,1285 0/0:24,0:24:69.22:0,69,875 0/0:44,0:44:99:0,129,1628 0/0:43,0:43:99:0,117,1483 0/1:20,11:31:99:338,0,568 0/0:34,0:34:96.30:0,96,1199 0/1:21,16:37:99:464,0,676 1/1:1,34:35:63.72:1180,64,0 0/0:32,1:33:58.51:0,59,1147 1 230898494 . C T 12991.39 . AC=21;AF=0.250;AN=84;BaseQRankSum=14.429;DP=1893;Dels=0.00;FS=7.157;HRun=0;HaplotypeScore=0.7987;InbreedingCoeff=0.3016;MQ=59.17;MQ0=0;MQRankSum=2.213;QD=20.02;ReadPosRankSum=1.163 GT:AD:DP:GQ:PL 1/1:0,28:28:84.25:1010,84,0 0/1:21,14:35:99:388,0,486 0/0:38,0:38:96.23:0,96,1109 0/0:61,0:61:99:0,178,2146 0/1:36,30:66:99:806,0,1084 0/1:39,28:67:99:793,0,1090 0/0:47,1:48:99:0,102,1629 1/1:1,38:39:76.99:1294,77,0 0/1:24,19:43:99:563,0,668 0/1:15,18:33:99:503,0,371 0/1:15,16:32:99:459,0,385 0/1:15,17:32:99:468,0,410 0/0:33,0:33:93.24:0,93,1052 1/1:0,36:36:99:1268,105,0 0/0:108,0:108:99:0,289,3262 0/0:30,1:31:45.10:0,45,883 0/1:21,19:40:99:590,0,537 0/0:37,0:37:99:0,99,1135 0/0:64,0:64:99:0,177,2003 0/0:75,0:75:99:0,214,2386 1/1:0,47:48:99:1507,126,0 0/1:17,19:36:99:509,0,432 0/0:91,0:91:99:0,253,3081 0/0:54,0:54:99:0,150,1805 0/0:44,0:44:99:0,114,1409 0/0:39,0:39:99:0,114,1382 0/0:22,0:22:60.12:0,60,647 0/1:12,19:31:99:528,0,314 0/0:33,0:33:96.20:0,96,1043 0/0:31,0:31:81.22:0,81,929 0/0:42,0:42:99:0,108,1248 1/1:0,45:45:99:1639,132,0 0/0:47,0:47:99:0,123,1393 0/0:38,0:38:99:0,105,1186 0/0:33,0:33:99:0,99,1087 0/1:16,22:38:99:665,0,393 0/0:61,0:61:99:0,165,1865 0/0:39,0:39:99:0,111,1236 0/0:54,0:54:99:0,153,1735 0/0:43,0:43:99:0,114,1294 0/0:33,1:34:55.45:0,55,961 0/0:43,0:44:99:0,117,1321 1 230916260 . C T 13985.14 . AC=11;AF=0.131;AN=84;BaseQRankSum=-4.098;DP=4269;DS;Dels=0.00;FS=9.662;HRun=0;HaplotypeScore=1.9067;InbreedingCoeff=0.2677;MQ=59.40;MQ0=0;MQRankSum=0.591;QD=19.08;ReadPosRankSum=-1.216 GT:AD:DP:GQ:PL 0/0:81,0:81:99:0,226,2637 0/0:82,0:82:99:0,220,2602 0/0:77,1:78:99:0,208,2495 0/0:150,0:151:99:0,385,5001 0/0:132,0:132:99:0,364,4754 0/0:122,0:122:99:0,325,4184 0/0:94,1:96:99:0,222,3268 0/0:94,0:94:99:0,247,3187 0/0:87,0:87:99:0,241,2885 0/0:82,0:82:99:0,232,2735 0/0:79,0:79:99:0,208,2513 0/0:116,0:116:99:0,310,3671 0/0:72,0:72:99:0,199,2324 0/0:75,0:75:99:0,211,2490 0/0:250,0:250:99:0,659,7927 0/0:70,0:70:99:0,205,2404 0/0:91,0:91:99:0,253,3007 0/0:92,0:92:99:0,244,2915 0/0:182,2:185:99:0,461,5725 0/0:147,0:147:99:0,400,4809 0/0:138,0:138:99:0,379,4485 0/0:86,1:88:99:0,197,2733 0/0:152,0:152:99:0,388,5057 0/1:44,26:70:99:755,0,1381 0/0:126,0:126:99:0,328,4323 0/1:54,24:78:99:643,0,1651 0/1:29,33:62:99:930,0,777 0/0:87,0:87:99:0,238,2791 0/1:28,44:72:99:1311,0,725 0/0:103,0:103:99:0,286,3414 0/0:94,0:94:99:0,256,3058 0/0:127,0:129:99:0,358,4275 0/0:99,0:99:99:0,262,3136 0/1:31,36:68:99:1053,0,846 0/1:41,40:82:99:1097,0,1113 0/0:90,0:90:99:0,253,3015 1/1:0,121:121:99:4111,343,0 0/1:51,37:89:99:957,0,1417 1/1:0,91:91:99:3128,259,0 0/0:95,0:95:99:0,256,3005 0/0:73,0:73:99:0,196,2284 0/0:79,1:80:99:0,190,2552 1 230925937 . T G 1044.37 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.697;DP=1920;Dels=0.00;FS=11.451;HRun=1;HaplotypeScore=1.0374;InbreedingCoeff=-0.0244;MQ=59.32;MQ0=0;MQRankSum=0.583;QD=13.56;ReadPosRankSum=-1.296 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,102,1192 0/0:36,1:37:93.26:0,93,1094 0/0:33,0:33:90.24:0,90,1050 0/0:75,0:76:99:0,199,2358 0/0:53,0:53:99:0,141,1718 0/0:61,0:61:99:0,162,1989 0/0:48,0:48:99:0,129,1540 0/0:51,0:51:99:0,138,1645 0/0:33,0:33:84.25:0,84,1006 0/0:38,0:38:99:0,108,1245 0/0:34,0:34:96.28:0,96,1129 0/0:44,0:44:99:0,120,1436 0/0:39,0:40:99:0,102,1223 0/0:41,1:42:99:0,120,1422 0/0:116,0:117:99:0,286,3451 0/0:30,0:30:81.23:0,81,956 0/0:40,0:40:99:0,117,1352 0/0:40,0:40:99:0,111,1311 0/0:67,0:67:99:0,171,2052 0/0:47,0:47:99:0,126,1517 0/0:62,0:63:99:0,168,2020 0/0:37,0:37:96.28:0,96,1162 0/0:74,0:74:99:0,184,2241 0/0:55,0:56:99:0,141,1708 0/0:58,0:58:99:0,162,1933 0/0:49,0:49:99:0,126,1513 0/0:37,0:37:99:0,105,1223 0/0:51,0:51:99:0,147,1736 0/0:33,0:33:93.24:0,93,1086 0/0:43,0:43:99:0,123,1434 0/0:45,0:45:99:0,117,1414 0/0:50,0:50:99:0,117,1450 0/0:31,0:31:75.21:0,75,914 0/0:37,0:37:99:0,105,1251 0/0:32,0:32:90.26:0,90,1064 0/0:30,0:30:87.23:0,87,1011 0/1:24,22:47:99:552,0,610 0/0:40,1:41:99:0,105,1203 0/1:12,18:30:99:555,0,290 0/0:36,0:36:99:0,105,1227 0/0:40,0:40:99:0,114,1343 0/0:33,0:34:93.24:0,93,1090 1 230931011 . T G 13.16 . AC=3;AF=0.036;AN=84;BaseQRankSum=-3.738;DP=549;Dels=0.00;FS=21.138;HRun=2;HaplotypeScore=3.5207;InbreedingCoeff=-0.0572;MQ=57.80;MQ0=0;MQRankSum=2.461;QD=0.31;ReadPosRankSum=-3.522 GT:AD:DP:GQ:PL 0/0:12,0:12:36.10:0,36,427 0/0:8,0:8:24.07:0,24,296 0/0:16,0:16:36.10:0,36,415 0/0:17,0:17:48.15:0,48,585 0/0:21,1:22:63.19:0,63,790 0/0:18,1:19:51.16:0,51,643 0/0:12,0:12:30.09:0,30,376 0/0:17,0:17:51.16:0,51,644 0/0:6,0:6:18.06:0,18,224 0/0:3,1:4:9.03:0,9,113 0/1:14,4:18:24.47:24,0,436 0/0:4,0:4:12.03:0,12,141 0/0:7,1:8:21.07:0,21,263 0/0:11,1:12:33.10:0,33,411 0/0:34,0:34:93.28:0,93,1128 0/0:9,0:9:27.08:0,27,325 0/1:6,7:13:15.06:15,0,204 0/0:7,4:11:0.30:11,0,202 0/0:23,1:24:63.20:0,63,780 0/0:21,0:21:57.18:0,57,709 0/0:22,0:22:51.14:0,51,618 0/0:4,0:4:12.04:0,12,153 0/0:23,0:23:69.22:0,69,869 0/0:11,0:11:30.09:0,30,370 0/0:16,2:18:42.13:0,42,531 0/0:12,1:13:36.11:0,36,452 0/0:9,1:10:27.09:0,27,335 0/0:8,0:8:24.08:0,24,297 0/0:8,0:8:18.05:0,18,215 0/0:11,0:11:33.10:0,33,404 0/0:11,0:11:33.10:0,33,408 0/0:27,1:28:72.22:0,72,889 0/0:13,1:14:39.12:0,39,472 0/0:7,0:7:18.05:0,18,210 0/0:6,0:6:12.04:0,12,144 0/0:5,0:5:12.04:0,12,147 0/0:20,0:20:48.15:0,48,581 0/1:9,2:11:43.40:43,0,232 0/0:8,0:8:24.07:0,24,279 0/0:13,1:14:36.11:0,36,443 0/0:4,0:4:9.03:0,9,109 0/0:5,1:6:9.03:0,9,107 1 230931013 . GAGAATGC G 399.95 . AC=10;AF=0.119;AN=84;BaseQRankSum=1.666;DP=526;FS=159.497;HRun=0;HaplotypeScore=76.3078;InbreedingCoeff=-0.1666;MQ=57.25;MQ0=0;MQRankSum=-1.114;QD=3.42;ReadPosRankSum=-11.072 GT:AD:DP:GQ:PL 0/0:11,0:11:15.11:0,15,1041 0/0:8,0:8:24.08:0,24,922 0/0:13,0:13:9.10:0,9,913 0/1:15,0:15:17.87:18,0,946 0/0:19,0:19:25.12:0,25,1573 0/0:18,0:18:26.14:0,26,1689 0/1:13,0:13:21.86:22,0,1129 0/0:14,0:14:36.12:0,36,1327 0/0:6,0:6:15.05:0,15,539 0/0:4,0:4:6.02:0,6,252 0/1:13,8:21:99:140,0,1039 0/0:4,0:4:2.56:1,0,277 0/0:8,0:8:21.05:0,21,673 0/0:12,0:12:33.10:0,33,1286 0/0:35,0:35:52.28:0,52,3045 0/0:8,0:8:24.08:0,24,702 0/1:6,10:16:99:139,0,495 0/1:7,7:14:62.36:62,0,617 0/0:23,0:23:1.83:3,0,1755 0/0:20,0:20:49.07:0,49,1640 0/0:21,0:21:17.14:0,17,1174 0/0:4,0:4:12.04:0,12,498 0/0:23,0:23:66.22:0,66,2387 0/0:10,0:9:26.96:0,27,872 0/0:15,0:15:17.21:0,17,1430 0/0:13,0:13:36.12:0,36,1247 0/0:10,0:9:27.08:0,27,868 0/0:8,0:8:24.07:0,24,815 0/1:6,0:6:27.94:28,0,391 0/0:10,0:10:30.10:0,30,1014 0/0:11,0:11:33.11:0,33,1273 0/0:25,0:25:62.02:0,62,2221 0/0:14,0:14:36.12:0,36,1316 0/1:7,0:7:4.79:5,0,682 0/0:7,0:7:12.04:0,12,452 0/0:5,0:5:0.05:0,0,400 0/0:13,0:13:28.33:0,28,840 0/1:9,3:12:60.77:61,0,579 0/1:7,0:7:8.93:9,0,564 0/0:13,0:13:23.13:0,23,1313 0/0:4,0:4:9.01:0,9,276 0/1:6,0:6:48.69:49,0,116 1 230931018 . T G 28.08 . AC=8;AF=0.095;AN=84;BaseQRankSum=-2.482;DP=599;Dels=0.05;FS=53.603;HRun=1;HaplotypeScore=4.8850;InbreedingCoeff=-0.1424;MQ=57.62;MQ0=0;MQRankSum=0.750;QD=0.29;ReadPosRankSum=-5.432 GT:AD:DP:GQ:PL 0/0:8,3:11:24.05:0,24,255 0/0:8,1:9:18.05:0,18,206 0/1:8,6:14:9.36:9,0,222 0/1:9,12:21:12.37:12,0,188 0/0:13,10:23:33.09:0,33,379 0/0:15,3:18:35.76:0,36,391 0/0:10,5:15:24.07:0,24,280 0/0:10,5:15:30.09:0,30,344 0/0:4,2:6:12.03:0,12,134 0/1:2,3:5:24.41:24,0,65 0/0:9,1:10:21.06:0,21,239 0/0:3,3:6:6.02:0,6,68 0/1:5,4:9:15.27:15,0,122 0/0:10,4:14:27.07:0,27,306 0/0:29,13:42:78.19:0,78,869 0/1:6,3:9:17.47:17,0,110 0/0:4,0:4:12.03:0,12,135 0/0:7,0:7:15.04:0,15,175 0/0:16,5:21:45.13:0,45,529 0/0:16,4:20:36.11:0,36,423 0/1:17,5:22:13.72:14,0,224 0/0:7,7:14:12.03:0,12,133 0/0:22,10:33:2.62:1,0,599 0/0:9,4:13:21.06:0,21,253 0/0:14,6:20:39.11:0,39,449 0/0:10,3:13:27.08:0,27,311 0/0:8,3:11:15.05:0,15,181 0/0:7,0:7:18.05:0,18,202 0/0:4,2:6:9.01:0,9,95 0/0:8,5:13:21.06:0,21,241 0/0:11,0:11:27.07:0,27,298 0/0:20,5:25:54.15:0,54,633 0/0:11,7:18:2.42:1,0,301 0/0:8,0:8:18.05:0,18,207 0/0:5,6:11:9.02:0,9,100 0/0:5,0:5:15.04:0,15,172 0/0:11,4:15:1.32:4,0,243 0/0:7,0:7:12.04:0,12,143 0/0:4,4:8:12.03:0,12,135 0/0:14,1:15:33.10:0,33,387 0/1:4,3:7:17.59:18,0,94 0/1:4,4:10:28.34:28,0,30 1 230931020 . C G 2930.24 . AC=35;AF=0.417;AN=84;BaseQRankSum=-9.057;DP=695;Dels=0.04;FS=496.547;HRun=1;HaplotypeScore=4.8691;InbreedingCoeff=-0.7097;MQ=57.94;MQ0=0;MQRankSum=-0.221;QD=4.95;ReadPosRankSum=-10.163 GT:AD:DP:GQ:PL 0/1:7,6:13:99:106,0,208 0/0:6,1:7:17.54:0,18,184 0/1:7,6:13:88.71:89,0,203 0/1:6,18:24:99:295,0,146 0/1:13,17:30:99:167,0,295 0/1:13,14:28:19.91:20,0,371 0/1:9,12:21:99:119,0,181 0/1:9,11:20:90.80:91,0,279 0/1:3,4:7:19.51:20,0,104 0/1:2,3:5:45.10:45,0,55 0/0:8,2:10:24.06:0,24,267 0/1:2,6:8:54.69:55,0,58 0/1:5,6:11:35.47:35,0,127 0/1:10,8:18:68.81:69,0,317 0/1:26,16:42:99:240,0,602 0/1:5,8:13:44.23:44,0,124 0/0:3,0:3:9.03:0,9,105 0/0:6,1:7:15.04:0,15,165 0/1:14,17:31:99:125,0,362 0/1:14,8:22:23.04:23,0,332 0/1:9,11:20:99:137,0,170 0/1:4,14:18:94.01:238,0,94 0/1:17,19:36:99:145,0,463 0/1:5,11:16:87.39:87,0,156 0/1:11,14:25:43.48:43,0,296 0/1:8,7:16:94.80:95,0,247 0/1:7,7:14:39.91:40,0,186 0/1:6,4:10:15.93:16,0,184 0/1:3,4:7:71.63:72,0,95 0/1:7,8:15:99:113,0,205 0/0:9,1:10:24.07:0,24,277 0/0:19,12:32:5.97:0,6,459 0/1:10,9:19:99:116,0,258 0/1:7,3:10:42.09:42,0,210 0/1:5,6:11:81.70:94,0,82 0/1:4,3:7:19.31:19,0,118 0/1:10,8:19:70:70,0,152 0/0:5,1:6:9.03:0,9,107 0/1:3,6:9:21.40:21,0,92 0/1:12,5:17:2.81:0,0,306 0/1:4,3:7:73.51:74,0,77 0/1:2,8:10:20.54:137,0,21 1 231376806 . G C 2492.04 . AC=3;AF=0.036;AN=84;BaseQRankSum=-4.189;DP=4968;DS;Dels=0.00;FS=1.232;HRun=0;HaplotypeScore=2.6483;InbreedingCoeff=-0.0370;MQ=59.34;MQ0=0;MQRankSum=-0.308;QD=10.93;ReadPosRankSum=-0.777 GT:AD:DP:GQ:PL 0/0:79,0:79:99:0,217,2689 0/0:87,0:87:99:0,238,2938 0/0:71,0:71:99:0,199,2499 0/0:243,1:244:99:0,626,8746 0/0:250,0:250:99:0,701,9422 0/0:200,0:201:99:0,515,6913 0/0:146,0:146:99:0,385,5164 0/0:210,0:210:99:0,542,7302 0/0:84,0:84:99:0,226,2851 0/0:61,0:61:99:0,162,2020 0/0:62,0:62:99:0,178,2200 0/0:73,0:73:99:0,193,2417 0/0:63,0:63:99:0,169,2114 0/0:92,0:92:99:0,238,2997 0/0:232,0:233:99:0,590,7452 0/0:95,0:95:99:0,262,3294 0/0:75,0:75:99:0,214,2635 0/1:37,28:65:99:732,0,1132 0/0:143,0:143:99:0,367,4578 0/0:198,0:198:99:0,527,6621 0/0:174,0:176:99:0,469,5846 0/0:87,0:87:99:0,244,3063 0/0:238,0:238:99:0,641,8633 0/0:157,0:157:99:0,406,5478 0/0:208,0:208:99:0,548,7351 0/0:136,0:136:99:0,373,4912 0/0:62,0:62:99:0,169,2151 0/0:89,0:89:99:0,229,2918 0/0:59,0:59:99:0,159,1996 0/0:75,0:75:99:0,205,2567 0/0:82,0:82:99:0,235,2923 0/0:201,0:201:99:0,500,6347 0/0:109,0:109:99:0,301,3716 0/0:81,0:81:99:0,226,2839 0/0:87,0:87:99:0,235,2941 0/0:83,0:83:99:0,232,2890 0/0:132,0:132:99:0,361,4393 0/0:75,0:75:99:0,214,2651 0/0:64,0:64:99:0,181,2251 0/1:50,31:81:99:854,0,1531 0/0:72,0:72:99:0,193,2406 0/1:48,34:82:99:981,0,1468 1 231377159 . C T 1214.89 . 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A G 50731.42 . 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A C 211.82 . 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G A 4717 . 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C T 24299.86 . 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A C 35.02 . 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T G 608.21 . 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C T 6100.04 . 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T G 17942.81 . 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A C 27150.55 . 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T C 8190.92 . AC=10;AF=0.119;AN=84;BaseQRankSum=-4.003;DP=3285;Dels=0.00;FS=7.327;HRun=0;HaplotypeScore=1.2323;InbreedingCoeff=-0.1351;MQ=59.49;MQ0=0;MQRankSum=0.401;QD=11.41;ReadPosRankSum=0.113 GT:AD:DP:GQ:PL 0/0:68,0:68:99:0,187,2275 0/1:32,27:59:99:732,0,960 0/1:23,28:51:99:697,0,666 0/0:134,0:134:99:0,358,4425 0/0:128,0:128:99:0,346,4314 0/0:153,0:153:99:0,412,5272 0/0:113,0:113:99:0,310,3917 0/0:122,0:122:99:0,319,3978 0/0:82,0:82:99:0,226,2737 0/1:34,23:57:99:559,0,1015 0/1:49,25:74:99:659,0,1374 0/0:68,0:68:99:0,196,2367 0/0:42,0:42:99:0,117,1434 0/0:54,0:54:99:0,159,1921 0/0:205,0:205:99:0,536,6522 0/0:49,0:49:99:0,147,1754 0/0:68,0:68:99:0,187,2269 0/0:57,0:57:99:0,162,1961 0/0:92,0:92:99:0,253,3113 0/0:74,0:74:99:0,193,2404 0/0:67,0:67:99:0,187,2289 0/1:29,24:53:99:649,0,818 0/1:76,51:127:99:1396,0,2229 0/0:106,0:106:99:0,292,3645 0/0:113,0:113:99:0,307,3839 0/1:52,46:98:99:1364,0,1460 0/0:61,0:61:99:0,159,1957 0/0:60,0:60:99:0,175,2071 0/0:49,0:49:99:0,141,1687 0/0:57,0:57:99:0,156,1923 0/0:51,0:51:99:0,138,1690 0/0:58,0:58:99:0,162,1978 0/1:31,32:63:99:860,0,854 0/0:76,0:76:99:0,223,2701 0/0:43,0:43:99:0,117,1465 0/0:65,0:65:99:0,190,2299 0/1:42,30:72:99:706,0,1168 0/1:40,23:63:99:568,0,1109 0/0:48,0:48:99:0,138,1668 0/0:85,0:85:99:0,229,2818 0/0:58,1:59:99:0,129,1905 0/0:59,0:59:99:0,175,2062 1 234584231 . C T 15351.40 . 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G A 2821.98 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.457;DP=3721;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.3841;InbreedingCoeff=-0.0244;MQ=59.50;MQ0=0;MQRankSum=1.768;QD=15.42;ReadPosRankSum=0.913 GT:AD:DP:GQ:PL 0/0:71,0:72:99:0,190,2428 0/0:83,0:83:99:0,217,2763 0/0:74,0:74:99:0,205,2560 0/0:103,0:103:99:0,265,3599 0/0:96,0:96:99:0,250,3421 0/0:107,0:107:99:0,271,3698 0/0:70,0:70:99:0,193,2590 0/0:76,0:76:99:0,202,2688 0/0:84,0:84:99:0,229,2895 0/0:80,0:80:99:0,217,2795 0/0:72,0:72:99:0,193,2467 0/0:77,0:78:99:0,211,2706 0/0:61,0:61:99:0,172,2186 0/0:88,0:88:99:0,223,2904 0/0:228,0:228:99:0,566,7297 0/0:50,0:50:99:0,138,1764 0/0:91,0:92:99:0,244,3110 0/0:80,0:80:99:0,238,2993 0/0:117,1:118:99:0,307,3892 0/0:130,0:130:99:0,331,4294 0/0:140,0:141:99:0,337,4431 0/1:38,46:84:99:1315,0,944 0/0:104,0:104:99:0,280,3835 0/0:68,0:68:99:0,181,2456 0/0:75,0:75:99:0,187,2528 0/0:78,0:78:99:0,205,2819 0/0:68,2:70:99:0,148,2336 0/0:92,0:92:99:0,244,3127 0/0:62,0:62:99:0,175,2224 0/0:75,0:75:99:0,202,2571 0/0:85,0:85:99:0,235,3008 0/0:139,0:139:99:0,343,4496 0/1:43,56:99:99:1569,0,1080 0/0:62,0:62:99:0,172,2191 0/0:86,0:86:99:0,235,2961 0/0:89,0:89:99:0,241,3080 0/0:110,0:110:99:0,280,3628 0/0:72,0:72:99:0,193,2463 0/0:76,0:76:99:0,217,2753 0/0:70,0:70:99:0,193,2478 0/0:64,0:64:99:0,165,2111 0/0:77,0:77:99:0,211,2696 1 234601454 . ACT A 14.91 . 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TA T 18.98 . AC=15;AF=0.179;AN=84;BaseQRankSum=3.953;DP=658;FS=6.892;HRun=19;HaplotypeScore=42.1871;InbreedingCoeff=-0.1419;MQ=57.99;MQ0=0;MQRankSum=1.564;QD=0.09;ReadPosRankSum=5.664 GT:AD:DP:GQ:PL 0/0:11,0:11:9.26:0,9,57 0/0:7,0:8:0.70:5,2,0 0/1:12,0:12:6.01:19,0,6 0/0:21,1:22:12.77:0,13,86 0/1:18,1:19:6.86:7,0,16 0/0:28,0:25:15.99:0,16,102 0/1:19,3:22:5.54:6,0,27 0/0:20,0:19:10.18:0,10,67 0/0:13,1:14:5.82:0,6,35 0/0:12,1:13:8.93:0,9,64 0/0:14,0:14:2.98:0,3,21 0/1:9,1:10:2.57:11,1,0 0/1:9,1:10:8.35:8,0,15 0/0:6,0:6:2.98:0,3,21 0/0:50,2:55:35.09:0,35,399 0/1:5,1:6:8.36:8,0,15 0/1:14,1:15:15.38:15,0,23 0/1:11,1:12:8.61:9,0,22 0/0:11,1:12:3.45:0,3,22 0/0:18,0:18:10.41:0,10,59 0/1:25,3:28:16.60:17,0,91 0/1:14,3:17:7.88:8,0,79 0/0:17,0:17:11.77:0,12,77 0/0:16,0:16:19:0,19,124 0/0:18,0:18:1.07:6,0,27 0/0:22,0:21:17.81:0,18,146 0/0:10,0:11:8.52:0,9,43 0/0:14,1:15:3.16:0,3,80 0/0:9,0:9:6.70:0,7,37 0/1:9,0:9:8.34:8,0,16 0/0:17,0:17:11.97:0,12,86 0/0:15,0:15:10.85:0,11,55 0/0:15,0:15:5.65:0,6,33 0/1:8,1:10:6.56:7,0,38 0/1:13,1:14:15.09:15,0,33 0/0:11,0:11:5.82:0,6,35 0/1:20,0:21:7.72:8,0,40 0/0:8,0:8:5.88:0,6,37 0/0:11,0:12:2.68:1,0,16 0/0:12,0:14:4.50:0,5,66 0/0:12,1:14:11.14:0,11,76 0/1:14,0:14:5.63:6,0,25 1 235715523 . A G 78765.10 . 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G A 1627.75 . 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T C 43761.33 . AC=35;AF=0.417;AN=84;BaseQRankSum=35.266;DP=3508;DS;Dels=0.00;FS=27.211;HRun=0;HaplotypeScore=0.8894;InbreedingCoeff=-0.0286;MQ=59.35;MQ0=0;MQRankSum=1.344;QD=18.45;ReadPosRankSum=-0.398 GT:AD:DP:GQ:PL 0/1:32,33:65:99:936,0,896 0/0:91,0:91:99:0,226,2805 0/0:50,0:50:99:0,126,1559 1/1:0,145:145:99:4815,349,0 0/1:60,61:121:99:1900,0,1504 0/0:140,0:140:99:0,367,4602 0/1:49,60:109:99:1792,0,1236 0/0:144,0:144:99:0,346,4359 0/1:47,24:71:99:720,0,1299 0/0:81,0:81:99:0,196,2418 1/1:0,66:66:99:2257,178,0 0/0:60,0:60:99:0,165,1976 0/0:70,0:70:99:0,184,2185 0/1:50,29:79:99:743,0,1309 0/1:125,118:243:99:3168,0,3198 0/1:25,20:45:99:587,0,688 0/1:37,30:67:99:820,0,1006 1/1:0,61:61:99:2047,159,0 0/1:35,50:86:99:1441,0,804 0/0:71,0:71:99:0,163,2071 0/1:46,33:79:99:904,0,1094 0/1:29,22:51:99:610,0,737 0/1:68,75:143:99:2353,0,1699 0/1:58,58:116:99:1750,0,1569 0/0:127,0:127:99:0,307,3849 1/1:0,113:113:99:3926,286,0 0/1:17,24:41:99:753,0,476 0/1:48,24:72:99:658,0,1276 1/1:1,54:55:99:1776,108,0 0/1:33,51:84:99:1466,0,855 1/1:0,74:74:99:2354,184,0 0/0:75,0:75:99:0,187,2317 0/0:50,0:50:99:0,120,1483 0/1:22,25:47:99:699,0,651 1/1:0,65:65:99:2150,169,0 0/1:52,24:76:99:569,0,1473 0/1:31,25:56:99:643,0,839 0/1:38,39:77:99:1081,0,1044 0/1:35,29:65:99:843,0,939 0/0:70,0:70:99:0,175,2140 0/0:56,0:56:99:0,150,1811 0/0:51,0:51:99:0,144,1724 1 236141174 . T C 22356.68 . 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T G 112.51 . AC=5;AF=0.060;AN=84;BaseQRankSum=-19.775;DP=2295;Dels=0.00;FS=536.580;HRun=2;HaplotypeScore=1.6404;InbreedingCoeff=-0.0867;MQ=58.33;MQ0=0;MQRankSum=-0.319;QD=0.39;ReadPosRankSum=-11.594 GT:AD:DP:GQ:PL 0/0:28,11:40:17.17:0,17,842 0/0:23,18:41:41.48:0,41,712 0/0:26,14:40:44.52:0,45,776 0/1:64,63:127:12.63:13,0,1899 0/0:53,47:100:81.55:0,82,1652 0/0:39,34:73:46.21:0,46,1198 0/0:48,38:86:78.32:0,78,1532 0/0:49,32:81:56.46:0,56,1446 0/0:24,14:38:72.21:0,72,853 0/0:22,13:35:41.47:0,41,680 0/0:30,8:39:55.84:0,56,945 0/1:20,16:36:48.26:48,0,578 0/0:18,16:34:15.02:0,15,537 0/0:25,12:37:45.59:0,46,821 0/0:77,45:122:62.12:0,62,2274 0/0:10,11:21:3.45:0,3,303 0/1:19,15:34:82.80:83,0,617 0/0:23,12:35:28.83:0,29,669 0/0:45,21:67:26.56:0,27,1371 0/0:52,35:87:99:0,123,1690 0/1:39,19:59:14.73:15,0,1246 0/0:18,24:42:54.15:0,54,635 0/0:74,69:143:91.97:0,92,2133 0/0:42,30:72:81.85:0,82,1320 0/0:41,43:85:24.92:0,25,1171 0/0:39,31:70:47.29:0,47,1188 0/0:16,9:25:23.47:0,23,532 0/0:27,9:36:37.87:0,38,919 0/0:19,13:32:2.13:2,0,567 0/0:22,13:36:36.58:0,37,733 0/0:27,12:39:25.98:0,26,896 0/0:34,19:53:98.60:0,99,1116 0/0:39,19:58:99:0,111,1313 0/0:30,13:43:35.98:0,36,966 0/1:22,14:36:45.15:45,0,639 0/0:23,19:42:38.78:0,39,789 0/0:40,14:54:56.67:0,57,1270 0/0:22,19:41:60.17:0,60,717 0/0:19,15:34:20.56:0,21,537 0/0:23,25:49:29.76:0,30,698 0/0:18,15:33:1.03:6,0,520 0/0:25,15:40:72.22:0,72,857 1 236157033 . G A 66.35 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.928;DP=573;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5610;InbreedingCoeff=-0.0170;MQ=58.70;MQ0=0;MQRankSum=0.796;QD=9.48;ReadPosRankSum=-0.825 GT:AD:DP:GQ:PL 0/0:3,0:3:6.02:0,6,71 0/0:15,0:15:42.12:0,42,518 0/0:11,0:11:27.05:0,27,315 0/0:26,0:26:66.20:0,66,838 0/0:25,0:25:66.20:0,66,866 0/0:17,0:17:51.15:0,51,645 0/0:14,0:15:39.13:0,39,528 0/0:15,0:15:45.10:0,45,546 0/0:7,0:7:18.04:0,18,197 0/0:9,0:9:24.08:0,24,314 0/0:13,0:13:33.10:0,33,401 0/0:9,0:9:24.07:0,24,284 0/0:9,0:9:24.08:0,24,303 0/0:13,0:13:33.10:0,33,417 0/0:30,0:30:75.20:0,75,896 0/0:13,0:14:33.11:0,33,425 0/0:17,0:17:45.12:0,45,527 0/0:15,0:15:42.12:0,42,492 0/0:21,0:21:54.16:0,54,667 0/0:11,0:11:27.08:0,27,347 0/0:20,0:21:51.15:0,51,618 0/0:14,0:14:39.11:0,39,475 0/0:27,0:27:75.22:0,75,939 0/0:9,0:9:24.08:0,24,323 0/0:18,0:19:51.16:0,51,651 0/0:16,0:16:45.14:0,45,574 0/0:18,0:18:42.14:0,42,558 0/1:3,4:7:89.67:113,0,90 0/0:10,0:10:27.07:0,27,320 0/0:9,0:9:27.07:0,27,309 0/0:11,0:11:33.09:0,33,387 0/0:10,0:10:30.09:0,30,366 0/0:9,0:9:24.07:0,24,292 0/0:11,0:11:27.09:0,27,344 0/0:9,0:9:21.07:0,21,263 0/0:8,0:8:18.05:0,18,218 0/0:25,0:25:57.17:0,57,718 0/0:14,0:14:36.10:0,36,430 0/0:13,0:13:36.11:0,36,451 0/0:8,0:8:24.07:0,24,290 0/0:4,0:4:9.02:0,9,93 0/0:6,0:6:18.06:0,18,233 1 236187413 . G A 288 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.504;DP=2010;Dels=0.00;FS=2.358;HRun=0;HaplotypeScore=1.5948;InbreedingCoeff=-0.0120;MQ=59.27;MQ0=0;MQRankSum=1.162;QD=8.47;ReadPosRankSum=0.554 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,162,1945 0/0:46,0:46:99:0,120,1479 0/0:32,0:32:93.25:0,93,1067 0/0:80,0:80:99:0,217,2780 0/0:51,0:51:99:0,144,1853 0/0:65,0:65:99:0,181,2332 0/0:39,0:39:99:0,114,1460 0/0:34,0:34:99:0,99,1242 0/0:69,0:69:99:0,187,2229 0/0:27,0:27:78.23:0,78,917 0/0:57,0:57:99:0,159,1903 0/0:43,0:43:99:0,117,1360 0/0:40,0:40:99:0,105,1281 0/0:48,0:48:99:0,135,1591 0/0:128,0:129:99:0,343,4094 0/0:40,0:40:99:0,117,1372 0/0:55,0:56:99:0,150,1799 0/0:29,0:29:84.22:0,84,953 0/0:66,0:66:99:0,168,2052 0/0:58,0:58:99:0,153,1824 0/0:47,0:47:99:0,126,1477 0/0:45,0:45:99:0,132,1574 0/0:78,0:78:99:0,217,2766 0/0:38,0:38:99:0,108,1367 0/0:43,0:43:99:0,126,1610 0/1:20,14:34:99:334,0,666 0/0:26,0:26:75.20:0,75,866 0/0:39,0:39:99:0,114,1324 0/0:30,0:30:84.24:0,84,1038 0/0:35,0:35:99:0,99,1193 0/0:32,0:32:93.26:0,93,1090 0/0:60,0:60:99:0,162,1924 0/0:43,0:43:99:0,123,1483 0/0:51,0:51:99:0,141,1652 0/0:40,0:40:99:0,102,1224 0/0:39,0:39:99:0,105,1198 0/0:75,0:76:99:0,211,2499 0/0:47,0:47:99:0,138,1606 0/0:38,0:38:99:0,114,1304 0/0:33,0:33:90.25:0,90,1073 0/0:25,0:25:75.21:0,75,865 0/0:43,0:43:99:0,120,1426 1 236187449 . C T 1274.07 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.314;DP=1856;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.3629;InbreedingCoeff=-0.0244;MQ=59.18;MQ0=0;MQRankSum=0.160;QD=13.27;ReadPosRankSum=1.383 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,156,1831 0/0:43,0:43:99:0,123,1401 0/0:43,0:43:99:0,120,1346 0/0:74,0:74:99:0,202,2553 0/0:39,0:39:99:0,108,1307 0/0:56,0:56:99:0,159,1899 0/0:44,0:44:99:0,117,1495 0/0:40,0:40:99:0,105,1336 0/0:60,0:60:99:0,171,1945 0/0:42,0:42:99:0,114,1326 0/0:46,0:46:99:0,129,1446 0/0:32,0:32:93.27:0,93,1103 0/0:29,0:29:84.19:0,84,955 0/0:38,0:38:99:0,102,1217 0/0:115,0:115:99:0,310,3587 0/0:30,0:30:87.24:0,87,1005 0/0:38,0:38:99:0,99,1175 0/0:35,0:35:99:0,105,1187 0/0:49,0:49:99:0,138,1576 0/0:56,1:57:99:0,125,1831 0/1:23,14:37:99:369,0,606 0/0:40,0:40:99:0,111,1267 0/0:60,0:60:99:0,174,2101 0/0:33,0:33:90.27:0,90,1122 0/0:40,0:40:99:0,108,1372 0/0:34,0:34:99:0,99,1232 0/0:30,0:31:81.20:0,81,942 0/0:27,0:27:81.21:0,81,897 0/0:27,0:27:81.20:0,81,890 0/0:40,0:40:99:0,108,1254 0/0:32,0:33:93.25:0,93,1073 0/1:26,32:59:99:968,0,608 0/0:32,0:32:90.24:0,90,1037 0/0:52,0:52:99:0,144,1667 0/0:52,0:52:99:0,141,1631 0/0:35,0:35:99:0,102,1144 0/0:72,0:73:99:0,174,2086 0/0:44,0:44:99:0,120,1444 0/0:33,0:33:87.23:0,87,1005 0/0:40,0:40:99:0,114,1288 0/0:29,0:29:84.23:0,84,972 0/0:38,0:38:99:0,105,1197 1 236368552 . T TAAGA 6549.78 . AC=2;AF=0.024;AN=84;BaseQRankSum=-14.123;DP=6582;DS;FS=23.102;HRun=0;HaplotypeScore=684.5765;InbreedingCoeff=-0.0244;MQ=59.34;MQ0=0;MQRankSum=-5.503;QD=25.69;ReadPosRankSum=-1.110 GT:AD:DP:GQ:PL 0/1:84,45:130:99:3721,0,2884 0/1:87,38:125:99:2828,0,3431 0/0:127,0:127:99:0,319,5872 0/0:204,0:204:99:0,575,10642 0/0:195,0:195:99:0,533,9734 0/0:215,0:206:99:0,560,10342 0/0:198,0:187:99:0,539,9951 0/0:217,0:208:99:0,584,10816 0/0:133,0:133:99:0,361,6643 0/0:156,0:156:99:0,415,7472 0/0:144,0:144:99:0,364,6620 0/0:135,0:135:99:0,358,6450 0/0:113,0:113:99:0,289,5237 0/0:132,0:132:99:0,352,6413 0/0:240,0:240:99:0,662,12181 0/0:109,0:109:99:0,292,5368 0/0:123,0:123:99:0,313,5746 0/0:125,0:125:99:0,310,5760 0/0:179,0:179:99:0,471,8542 0/0:221,0:221:99:0,602,11098 0/0:174,0:174:99:0,466,8476 0/0:153,0:153:99:0,412,7579 0/0:206,0:206:99:0,581,10674 0/0:201,0:188:99:0,578,10736 0/0:192,0:179:99:0,506,9352 0/0:200,0:187:99:0,548,10113 0/0:117,0:117:99:0,301,5476 0/0:146,0:146:99:0,388,7162 0/0:127,0:127:99:0,346,6149 0/0:124,0:124:99:0,310,5641 0/0:105,0:104:99:0,280,5092 0/0:218,0:218:99:0,590,10768 0/0:163,0:163:99:0,433,7927 0/0:129,0:129:99:0,355,6484 0/0:144,0:144:99:0,364,6491 0/0:147,0:147:99:0,376,6854 0/0:192,0:192:99:0,511,9275 0/0:144,0:144:99:0,388,7155 0/0:124,0:124:99:0,337,6175 0/0:123,0:122:99:0,322,5861 0/0:104,0:104:99:0,283,5262 0/0:128,0:128:99:0,358,6552 1 236700807 . T A 36778.09 . 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T C 41559.23 . 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G C 28775.93 . 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C T 740.67 . 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T C 93643.11 . 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G T 100.11 . 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T C 7567 . 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G A 404.80 . 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C T 1313.08 . 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A G 1117.31 . 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G C 589.44 . 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A G 1748.57 . 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G A 4168.72 . 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T C 86767.37 . AC=53;AF=0.631;AN=84;BaseQRankSum=44.275;DP=4116;DS;Dels=0.00;FS=5.252;HRun=0;HaplotypeScore=1.3560;InbreedingCoeff=0.0286;MQ=59.50;MQ0=0;MQRankSum=0.915;QD=24.10;ReadPosRankSum=1.326 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2539,199,0 1/1:0,77:77:99:2782,220,0 0/1:41,36:77:99:1023,0,1156 1/1:0,187:187:99:6589,476,0 1/1:0,187:189:99:6745,482,0 0/1:100,87:187:99:2633,0,2804 0/0:132,0:132:99:0,337,4244 0/1:70,78:148:99:2249,0,1853 0/1:38,28:66:99:832,0,1096 1/1:0,67:67:99:2379,184,0 0/1:31,33:64:99:1016,0,907 0/0:50,0:50:99:0,144,1727 0/1:29,24:53:99:716,0,787 0/0:56,0:57:99:0,156,1862 1/1:0,232:232:99:7980,614,0 1/1:0,54:55:99:1908,147,0 1/1:0,81:82:99:2821,217,0 1/1:0,71:71:99:2485,193,0 1/1:0,114:114:99:3756,289,0 1/1:0,113:113:99:3665,277,0 0/0:102,0:103:99:0,265,3239 0/1:31,28:59:99:873,0,816 0/1:98,101:199:99:3146,0,2634 0/1:73,74:147:99:2330,0,2003 0/1:87,97:184:99:3028,0,2253 0/1:88,80:168:99:2469,0,2408 0/1:36,27:63:99:850,0,938 1/1:0,68:68:99:2286,178,0 0/1:29,27:56:99:754,0,810 0/1:35,43:78:99:1328,0,948 1/1:0,52:52:99:1882,144,0 0/0:105,0:105:99:0,271,3354 0/0:68,0:68:99:0,181,2192 1/1:0,81:81:99:2796,214,0 1/1:0,72:72:99:2683,211,0 0/1:29,40:69:99:1266,0,794 0/1:61,50:112:99:1372,0,1568 0/1:42,28:70:99:839,0,1146 1/1:0,78:78:99:2670,205,0 0/1:32,39:71:99:1171,0,921 1/1:1,64:65:99:2278,147,0 0/1:35,22:57:99:629,0,1008 1 236750709 . C T 290.04 . 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C T 512.80 . 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C T 9791 . 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C T 814.19 . 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G A 739.29 . 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C T 2853.20 . 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A G 42551.87 . 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C T 77017.58 . 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C A 69.93 . 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A G 52297.59 . AC=81;AF=0.964;AN=84;BaseQRankSum=0.363;DP=1680;Dels=0.00;FS=12.249;HRun=0;HaplotypeScore=0.8784;InbreedingCoeff=-0.0370;MQ=59.23;MQ0=0;MQRankSum=1.377;QD=31.13;ReadPosRankSum=-1.685 GT:AD:DP:GQ:PL 1/1:0,33:33:87.25:1033,87,0 0/1:22,23:45:99:598,0,645 0/1:18,27:45:99:774,0,488 1/1:0,54:54:99:1982,159,0 1/1:0,48:48:99:1825,144,0 1/1:0,36:36:93.29:1198,93,0 1/1:0,37:37:96.25:1186,96,0 1/1:0,42:42:99:1390,111,0 1/1:0,26:26:78.22:910,78,0 1/1:1,27:28:37.86:791,38,0 1/1:0,28:28:81.21:927,81,0 1/1:0,35:35:99:1200,99,0 1/1:0,40:40:99:1264,108,0 1/1:0,36:36:99:1209,105,0 1/1:0,89:90:99:2753,232,0 1/1:0,27:27:75.21:886,75,0 1/1:0,43:43:99:1369,117,0 1/1:0,25:25:75.20:877,75,0 1/1:0,72:73:99:2166,178,0 1/1:0,54:54:99:1704,144,0 1/1:0,61:61:99:1995,168,0 0/1:35,18:53:99:444,0,1034 1/1:0,54:54:99:1879,150,0 1/1:0,41:41:99:1305,102,0 1/1:0,36:36:99:1270,102,0 1/1:0,37:38:99:1308,105,0 1/1:0,18:18:54.14:622,54,0 1/1:0,31:31:87.26:1069,87,0 1/1:0,36:36:96.26:1155,96,0 1/1:0,35:35:99:1155,99,0 1/1:0,26:26:75.17:860,75,0 1/1:0,51:51:99:1680,144,0 1/1:0,36:36:99:1214,105,0 1/1:0,35:35:96.28:1142,96,0 1/1:0,34:34:90.26:1085,90,0 1/1:0,43:43:99:1425,123,0 1/1:0,39:39:99:1217,102,0 1/1:0,44:45:99:1328,114,0 1/1:0,28:28:84.25:992,84,0 1/1:0,37:37:99:1242,108,0 1/1:0,35:35:93.26:1098,93,0 1/1:0,23:23:66.17:768,66,0 1 237729972 . C T 2520.37 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.566;DP=7449;DS;Dels=0.00;FS=3.538;HRun=0;HaplotypeScore=3.2195;InbreedingCoeff=-0.0120;MQ=59.58;MQ0=0;MQRankSum=-0.189;QD=15.27;ReadPosRankSum=-0.598 GT:AD:DP:GQ:PL 0/1:75,90:165:99:2567,0,1990 0/0:157,0:157:99:0,430,5162 0/0:135,0:135:99:0,355,4306 0/0:250,0:250:99:0,704,9133 0/0:236,0:236:99:0,656,8562 0/0:202,0:202:99:0,563,7392 0/0:182,0:182:99:0,506,6554 0/0:193,0:193:99:0,536,7047 0/0:157,0:157:99:0,415,5050 0/0:132,0:132:99:0,343,4137 0/0:160,0:163:99:0,442,5278 0/0:128,0:128:99:0,358,4339 0/0:108,0:108:99:0,283,3386 0/0:153,0:153:99:0,415,5036 0/0:250,0:250:99:0,692,8138 0/0:135,0:136:99:0,388,4590 0/0:157,0:157:99:0,430,5221 0/0:161,0:161:99:0,454,5382 0/0:249,0:250:99:0,653,7769 0/0:250,0:250:99:0,683,8210 0/0:241,0:242:99:0,641,7691 0/0:184,0:184:99:0,502,6086 0/0:249,1:250:99:0,685,9313 0/0:183,0:183:99:0,491,6455 0/0:222,0:223:99:0,614,8049 0/0:191,0:191:99:0,512,6775 0/0:110,0:110:99:0,313,3705 0/0:155,0:155:99:0,433,5126 0/0:134,0:135:99:0,352,4311 0/0:134,0:134:99:0,379,4505 0/0:134,0:134:99:0,385,4614 0/0:248,1:249:99:0,659,7965 0/0:222,0:222:99:0,608,7345 0/0:154,0:154:99:0,421,5085 0/0:169,0:169:99:0,472,5640 0/0:162,0:162:99:0,445,5361 0/0:249,0:250:99:0,659,7906 0/0:133,0:133:99:0,352,4231 0/0:146,0:146:99:0,391,4729 0/0:149,0:149:99:0,421,5059 0/0:129,0:129:99:0,364,4359 0/0:178,0:178:99:0,490,5942 1 237814783 . C T 5282.80 . AC=39;AF=0.464;AN=84;BaseQRankSum=7.499;DP=447;Dels=0.00;FS=1.344;HRun=0;HaplotypeScore=0.1410;InbreedingCoeff=-0.0325;MQ=59.34;MQ0=0;MQRankSum=-0.475;QD=17.38;ReadPosRankSum=0.166 GT:AD:DP:GQ:PL 0/1:8,5:13:99:128,0,228 1/1:0,12:12:36.11:443,36,0 0/1:3,7:10:73.28:219,0,73 0/0:17,0:17:39.12:0,39,504 0/0:22,0:22:63.20:0,63,785 0/0:7,0:7:21.07:0,21,263 0/1:10,3:13:74.27:74,0,330 0/1:5,3:8:59.83:60,0,168 1/1:0,11:11:30.10:378,30,0 0/1:2,3:5:20.46:96,0,20 0/0:3,0:3:9.03:0,9,104 1/1:0,8:8:21.07:265,21,0 1/1:0,5:5:12.04:156,12,0 0/1:2,3:5:47.08:97,0,47 0/1:21,10:31:99:204,0,569 0/0:8,0:8:15.05:0,15,203 0/1:3,4:7:77.22:118,0,77 0/0:9,0:9:27.07:0,27,292 0/0:18,0:18:45.11:0,45,526 0/1:7,10:17:99:320,0,140 0/1:14,3:17:43.45:43,0,354 0/1:2,6:8:44.56:194,0,45 0/0:12,0:12:33.10:0,33,416 0/1:5,1:6:19.74:20,0,160 0/1:9,4:13:99:110,0,298 1/1:0,13:13:36.12:463,36,0 0/1:2,3:5:49.01:94,0,49 0/0:9,0:9:21.06:0,21,256 1/1:0,3:3:6.02:76,6,0 0/1:7,3:10:80.01:80,0,196 0/1:7,6:13:99:189,0,177 0/0:11,1:12:7.45:0,7,343 0/1:9,4:13:91.82:92,0,250 1/1:0,8:8:21.07:264,21,0 1/1:0,8:8:24.07:294,24,0 1/1:0,11:11:30.09:380,30,0 0/0:21,0:21:51.15:0,51,612 0/0:5,0:5:15.04:0,15,167 0/1:4,3:7:90.70:91,0,106 0/1:1,6:7:15.91:205,0,16 0/1:9,2:11:37.32:37,0,262 0/1:3,3:6:82.23:92,0,82 1 237961357 . G A 293.96 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.499;DP=1220;Dels=0.00;FS=1.171;HRun=1;HaplotypeScore=0.6189;InbreedingCoeff=-0.0121;MQ=59.29;MQ0=0;MQRankSum=-1.003;QD=16.33;ReadPosRankSum=-1.209 GT:AD:DP:GQ:PL 0/0:19,0:19:54.17:0,54,676 0/0:34,0:34:81.24:0,81,1052 0/0:19,0:19:51.16:0,51,631 0/0:34,0:34:84.27:0,84,1103 0/0:25,0:25:60.20:0,60,817 0/0:27,0:27:78.25:0,78,1033 0/0:17,0:17:51.14:0,51,672 0/0:24,0:24:66.21:0,66,855 0/0:19,0:19:51.15:0,51,643 0/0:18,0:18:45.14:0,45,567 0/0:17,0:18:45.15:0,45,587 0/0:26,0:26:72.23:0,72,917 0/0:30,0:30:81.25:0,81,1022 0/0:20,0:20:57.17:0,57,704 0/0:73,0:76:99:0,190,2325 0/0:19,0:19:48.14:0,48,611 0/0:26,0:26:69.22:0,69,882 0/0:26,0:26:60.18:0,60,750 0/0:52,0:52:99:0,132,1673 0/0:43,0:44:99:0,111,1411 0/0:60,0:61:99:0,166,2044 0/0:36,0:36:99:0,99,1223 0/0:29,0:29:81.26:0,81,1072 0/0:19,0:19:51.16:0,51,661 0/0:28,0:28:72.24:0,72,972 0/0:23,0:23:48.16:0,48,656 0/0:10,0:10:27.08:0,27,331 0/0:28,0:29:81.24:0,81,992 0/0:31,0:31:90.27:0,90,1091 0/0:29,0:29:75.22:0,75,928 0/0:20,0:20:54.15:0,54,673 0/0:58,0:58:99:0,147,1835 0/0:33,0:33:87.27:0,87,1108 0/0:28,0:28:75.23:0,75,949 0/0:22,0:22:60.19:0,60,758 0/0:31,0:31:84.25:0,84,1033 0/0:42,1:44:79.53:0,80,1349 0/0:23,0:23:63.18:0,63,763 0/0:22,0:22:66.19:0,66,792 0/0:27,0:27:75.23:0,75,940 0/0:26,0:26:66.18:0,66,807 0/1:7,11:18:99:340,0,204 1 240492734 . G A 54322.66 . AC=28;AF=0.333;AN=84;BaseQRankSum=12.254;DP=5414;DS;Dels=0.00;FS=8.603;HRun=0;HaplotypeScore=2.3183;InbreedingCoeff=0.0357;MQ=59.58;MQ0=0;MQRankSum=-0.201;QD=18.74;ReadPosRankSum=2.065 GT:AD:DP:GQ:PL 0/0:112,1:113:99:0,271,3521 0/1:51,48:99:99:1381,0,1389 1/1:1,93:94:99:3206,239,0 1/1:0,249:249:99:8434,683,0 1/1:0,181:181:99:6394,515,0 0/0:222,0:222:99:0,605,7835 0/0:179,0:179:99:0,494,6402 0/0:202,0:202:99:0,539,6869 0/1:55,44:99:99:1205,0,1551 1/1:0,84:84:99:2763,226,0 0/1:32,45:77:99:1281,0,821 0/0:118,0:118:99:0,331,3838 0/0:104,3:107:99:0,198,3169 0/0:85,1:86:99:0,213,2809 0/0:250,0:250:99:0,713,8216 0/0:67,0:67:99:0,192,2205 0/0:110,0:110:99:0,310,3585 0/1:68,49:117:99:1362,0,1885 0/0:157,0:157:99:0,427,4957 0/0:130,0:131:99:0,361,4188 0/1:86,72:159:99:2004,0,2332 1/1:0,93:93:99:3133,256,0 0/1:144,106:250:99:2992,0,4304 0/1:100,102:202:99:2918,0,2864 0/1:75,93:168:99:2739,0,2223 0/1:87,81:168:99:2291,0,2739 0/1:30,40:70:99:1093,0,812 0/0:95,0:95:99:0,268,3134 0/1:46,49:95:99:1446,0,1200 0/1:44,43:87:99:1245,0,1206 0/1:54,54:108:99:1575,0,1492 0/0:146,0:146:99:0,388,4613 0/0:89,0:89:99:0,241,2804 0/0:115,0:115:99:0,328,3754 0/1:53,54:107:99:1547,0,1415 0/1:59,52:113:99:1468,0,1652 0/0:120,0:121:99:0,328,3710 0/0:110,0:110:99:0,307,3557 0/0:97,0:97:99:0,271,3144 0/1:55,47:102:99:1324,0,1466 0/1:43,40:83:99:1195,0,1094 0/1:49,45:94:99:1328,0,1343 1 241712134 . C T 18973.78 . AC=29;AF=0.345;AN=84;BaseQRankSum=-27.420;DP=2378;Dels=0.00;FS=20.419;HRun=1;HaplotypeScore=0.6367;InbreedingCoeff=-0.1060;MQ=59.10;MQ0=0;MQRankSum=1.333;QD=13.14;ReadPosRankSum=-2.369 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1168,99,0 0/1:23,21:44:99:543,0,717 0/0:44,0:44:99:0,123,1546 0/1:49,36:85:99:948,0,1640 0/0:107,0:107:99:0,298,4034 0/1:52,34:86:99:880,0,1764 0/0:96,0:96:99:0,259,3508 0/1:59,35:95:99:901,0,1803 0/0:40,1:41:73.98:0,74,1304 0/1:19,17:36:99:476,0,563 0/0:36,0:36:99:0,102,1265 0/0:64,0:64:99:0,175,2204 0/0:49,0:49:99:0,129,1677 0/0:44,0:44:99:0,120,1509 0/1:76,57:134:99:1485,0,2200 1/1:0,26:26:75.22:887,75,0 0/0:52,0:52:99:0,147,1861 0/1:25,26:51:99:746,0,701 0/1:20,24:44:99:702,0,600 0/1:37,26:63:99:708,0,1101 0/1:25,22:47:99:608,0,724 0/0:35,0:36:96.30:0,96,1215 0/1:65,40:105:99:1003,0,2001 0/1:58,31:89:99:835,0,1822 0/0:103,0:104:99:0,271,3684 0/1:51,45:96:99:1199,0,1546 1/1:1,29:30:87.26:1019,87,0 0/1:21,17:38:99:466,0,678 1/1:0,26:26:75.22:885,75,0 0/1:20,13:33:99:364,0,630 0/1:21,19:40:99:528,0,657 0/1:31,24:55:99:669,0,893 0/1:23,13:36:99:350,0,692 0/0:33,1:34:63.19:0,63,1183 0/0:42,0:42:99:0,126,1549 0/0:51,0:51:99:0,147,1847 0/0:45,0:45:99:0,126,1586 0/0:42,0:42:99:0,123,1551 0/1:36,21:57:99:513,0,1160 0/1:28,18:47:99:505,0,879 0/1:24,22:46:99:585,0,624 0/0:46,0:47:99:0,135,1676 1 241712990 . T TA 1016.98 . AC=19;AF=0.226;AN=84;BaseQRankSum=-1.078;DP=4068;DS;FS=1183.740;HRun=1;HaplotypeScore=271.8480;InbreedingCoeff=-0.3020;MQ=59.25;MQ0=0;MQRankSum=-0.165;QD=0.53;ReadPosRankSum=-19.083 GT:AD:DP:GQ:PL 0/1:101,0:101:99:135,0,1615 0/0:104,0:104:86.97:0,87,2057 0/1:88,1:89:59.94:60,0,1099 0/0:167,0:167:22.53:0,23,2555 0/1:152,0:152:81.08:81,0,2140 0/0:142,0:142:10.16:0,10,2294 0/0:112,0:111:33.97:0,34,1529 0/0:129,0:127:99:0,123,2140 0/1:102,0:102:82.52:83,0,1816 0/0:68,0:68:99:0,112,1696 0/1:71,0:71:31.65:32,0,860 0/1:84,0:84:42.80:43,0,1399 0/0:64,0:64:40.16:0,40,1315 0/0:63,0:63:56.21:0,56,1143 0/1:182,59:241:34.81:35,0,3583 0/0:51,0:51:7.03:0,7,893 0/1:83,0:83:60.96:61,0,1318 0/1:72,0:72:51.95:52,0,1170 0/0:85,0:85:32.41:0,32,1226 0/0:110,0:110:83.58:0,84,2562 0/1:88,0:88:99:138,0,1122 0/0:58,0:58:43.54:0,44,1055 0/1:164,0:164:29.07:29,0,2496 0/0:136,0:136:99:0,158,2499 0/0:147,0:147:35.57:0,36,2438 0/1:107,0:105:29.51:30,0,1568 0/1:64,0:64:9.41:9,0,1147 0/1:85,18:103:99:102,0,1570 0/0:81,0:81:13.41:0,13,1477 0/1:80,0:80:43.75:44,0,1492 0/0:65,0:65:24.46:0,24,1307 0/0:79,0:79:99:0,137,1888 0/1:72,0:72:84.43:84,0,1088 0/0:66,0:66:4.46:0,4,998 0/1:82,0:82:16.41:16,0,1484 0/0:80,0:80:99:0,108,1541 0/1:80,0:80:54.12:54,0,1244 0/0:88,0:88:42.67:0,43,1394 0/0:71,1:72:59.27:0,59,1209 0/1:70,24:94:99:106,0,1317 0/0:81,0:81:17.57:0,18,1368 0/0:91,0:91:15.67:0,16,1404 1 241712991 . ACCTTC A 502.49 . AC=13;AF=0.155;AN=84;BaseQRankSum=-6.509;DP=3825;DS;FS=1010.858;HRun=0;HaplotypeScore=433.5087;InbreedingCoeff=-0.1934;MQ=59.25;MQ0=0;MQRankSum=1.806;QD=0.46;ReadPosRankSum=-19.920 GT:AD:DP:GQ:PL 0/1:93,0:93:68.71:69,0,5020 0/0:103,0:103:96.25:0,96,5628 0/1:62,22:84:79.78:80,0,3246 0/0:158,0:158:80.83:0,81,7274 0/1:141,0:141:38.70:39,0,6269 0/0:128,0:128:33.94:0,34,6514 0/0:108,0:107:89:0,89,4933 0/0:125,0:123:99:0,180,5994 0/1:94,0:94:6.14:6,0,5258 0/0:63,0:63:99:0,118,4461 0/1:72,0:72:10.48:10,0,2969 0/1:82,0:82:25.72:26,0,4109 0/0:62,0:62:49.21:0,49,3733 0/0:63,0:63:69.29:0,69,3474 0/0:177,0:177:66.83:0,67,10524 0/0:48,0:48:13.07:0,13,2549 0/1:78,0:78:46.53:47,0,3722 0/1:68,0:68:42.11:42,0,3377 0/0:75,0:75:40.80:0,41,3438 0/0:108,0:108:99:0,111,6641 0/1:75,0:75:99:104,0,3351 0/0:55,0:55:55.36:0,55,2962 0/0:164,0:164:26.67:0,27,8013 0/0:137,0:137:99:0,187,6930 0/0:143,0:143:99:0,151,7243 0/0:107,0:105:55.41:0,55,4706 0/0:64,0:64:1.65:3,0,3239 0/1:92,0:92:67.68:68,0,4738 0/0:80,0:81:13.53:0,14,3945 0/1:77,0:77:14.50:14,0,4609 0/0:63,0:63:70.58:0,71,3611 0/0:79,0:79:99:0,149,5114 0/1:70,0:70:69.10:69,0,3393 0/0:58,0:58:7.59:0,8,2753 0/0:81,0:81:25.77:0,26,4283 0/0:76,0:76:99:0,134,4723 0/0:77,0:77:28.97:0,29,3888 0/0:79,0:79:60.45:0,60,3936 0/0:68,0:68:65.67:0,66,3416 0/1:77,0:77:81.57:82,0,4326 0/0:80,0:80:44.32:0,44,3884 0/0:92,0:92:51.29:0,51,4460 1 241712992 . C A 1165.04 . AC=21;AF=0.250;AN=84;BaseQRankSum=-17.673;DP=3825;DS;Dels=0.01;FS=959.481;HRun=1;HaplotypeScore=5.2913;InbreedingCoeff=-0.3540;MQ=59.25;MQ0=0;MQRankSum=0.228;QD=0.57;ReadPosRankSum=-15.003 GT:AD:DP:GQ:PL 0/1:68,25:93:97.45:97,0,1526 0/0:78,24:103:73.71:0,74,1821 0/0:52,10:62:37.05:0,37,1011 0/1:107,51:158:16.07:16,0,2319 0/1:93,48:141:99:203,0,1889 0/1:91,37:128:17.22:17,0,2206 0/1:69,39:108:38.99:39,0,1431 0/0:92,33:125:99:0,117,2103 0/1:72,22:94:99:102,0,1540 0/0:57,6:63:99:0,100,1534 0/1:43,29:72:7.09:7,0,798 0/1:53,29:82:99:129,0,1313 0/0:46,16:62:68.77:0,69,1187 0/0:46,17:63:98.75:0,99,1186 0/0:160,16:177:99:0,199,3887 0/0:37,11:48:17.17:0,17,821 0/1:52,26:78:61.01:61,0,1133 0/1:49,19:68:78.62:79,0,1007 0/0:55,20:75:43.13:0,43,1090 0/0:81,27:108:71.08:0,71,1899 0/1:49,26:75:99:119,0,1044 0/0:40,15:55:1.42:0,1,876 0/1:108,56:164:67.67:68,0,2449 0/0:100,37:137:99:0,105,2303 0/1:98,44:143:53.45:53,0,2316 0/1:71,36:107:61.70:62,0,1527 0/1:46,17:64:9.36:9,0,960 0/0:79,13:92:99:0,111,1876 0/0:58,23:81:59.06:0,59,1327 0/1:54,23:77:25.20:25,0,1222 0/0:46,17:63:28.04:0,28,1116 0/0:70,9:79:99:0,125,1683 0/1:47,23:70:99:108,0,847 0/0:36,22:58:2.32:2,0,887 0/1:57,24:81:19.05:19,0,1398 0/0:60,15:76:99:0,138,1644 0/1:51,26:77:29.89:30,0,1260 0/0:53,26:79:2.50:0,2,1096 0/0:48,20:68:27.18:0,27,1031 0/0:70,7:77:99:0,107,1631 0/1:57,23:80:77.49:77,0,1151 0/1:63,29:92:9.53:10,0,1330 1 241755348 . C T 34692.75 . AC=19;AF=0.226;AN=84;BaseQRankSum=18.963;DP=6008;DS;Dels=0.00;FS=0.405;HRun=0;HaplotypeScore=2.5783;InbreedingCoeff=-0.0202;MQ=59.64;MQ0=0;MQRankSum=-1.202;QD=15.88;ReadPosRankSum=-3.241 GT:AD:DP:GQ:PL 0/0:112,0:112:99:0,307,3554 0/1:55,39:94:99:1126,0,1426 0/1:52,57:109:99:1635,0,1319 0/0:220,0:220:99:0,602,7344 0/1:119,122:241:99:3589,0,3399 0/0:220,0:220:99:0,617,7603 0/1:83,78:161:99:2428,0,2290 0/0:190,0:190:99:0,515,6357 0/0:129,0:129:99:0,343,4005 0/0:106,0:107:99:0,292,3338 0/0:103,0:103:99:0,277,3241 0/1:54,53:107:99:1598,0,1347 0/0:105,0:105:99:0,277,3218 1/1:0,119:120:99:4122,331,0 0/1:119,127:246:99:3589,0,2940 0/1:47,42:89:99:1213,0,1252 0/1:58,48:106:99:1417,0,1498 0/0:105,1:106:99:0,263,3291 0/0:197,0:197:99:0,535,6118 0/0:146,0:146:99:0,391,4488 0/1:80,85:165:99:2206,0,2080 0/1:48,51:99:99:1494,0,1147 0/0:218,0:218:99:0,599,7455 0/0:230,0:230:99:0,629,7877 0/0:207,0:207:99:0,563,7052 0/0:214,0:214:99:0,581,7206 0/0:95,0:96:99:0,265,3058 0/0:132,0:132:99:0,364,4126 0/0:106,0:106:99:0,289,3330 0/0:138,0:138:99:0,379,4354 0/1:65,43:108:99:1200,0,1764 0/0:213,0:213:99:0,554,6448 0/0:111,0:111:99:0,301,3422 1/1:0,93:93:99:3330,268,0 0/1:55,43:98:99:1182,0,1465 0/1:68,67:136:99:1953,0,1718 0/0:159,0:159:99:0,421,4851 0/1:55,49:104:99:1341,0,1504 0/1:64,45:109:99:1268,0,1744 0/0:117,0:117:99:0,328,3733 0/0:113,0:113:99:0,301,3482 0/0:134,0:134:99:0,364,4239 1 241907706 . C T 993.56 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.515;DP=3333;Dels=0.00;FS=8.794;HRun=1;HaplotypeScore=1.3959;InbreedingCoeff=-0.0244;MQ=59.35;MQ0=0;MQRankSum=0.167;QD=9.37;ReadPosRankSum=2.148 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,184,2166 0/0:65,0:65:99:0,178,2157 0/0:59,0:59:99:0,156,1906 0/0:139,0:139:99:0,364,4761 0/0:128,0:128:99:0,340,4479 0/0:132,0:132:99:0,346,4506 0/0:128,0:128:99:0,331,4421 0/0:133,0:134:99:0,349,4548 0/0:70,0:70:99:0,187,2289 0/0:49,1:50:99:0,129,1573 0/0:73,0:73:99:0,205,2459 0/0:65,0:65:99:0,187,2240 0/0:39,0:39:99:0,111,1319 0/0:49,0:49:99:0,135,1647 0/0:220,0:220:99:0,572,7016 0/0:58,0:58:99:0,175,2129 0/0:64,0:64:99:0,180,2150 0/1:22,14:36:99:402,0,643 0/1:46,24:70:99:654,0,1372 0/0:81,0:81:99:0,217,2615 0/0:101,1:103:99:0,259,3148 0/0:38,0:38:99:0,111,1302 0/0:174,0:174:99:0,463,6075 0/0:121,0:122:99:0,301,3981 0/0:103,0:103:99:0,274,3573 0/0:123,0:123:99:0,310,4102 0/0:40,0:40:99:0,108,1353 0/0:52,0:53:99:0,144,1723 0/0:66,0:66:99:0,193,2257 0/0:62,0:63:99:0,166,2081 0/0:52,0:52:99:0,144,1779 0/0:86,0:86:99:0,220,2714 0/0:53,0:53:99:0,150,1826 0/0:52,0:52:99:0,144,1758 0/0:58,0:58:99:0,162,1961 0/0:68,0:68:99:0,184,2251 0/0:76,0:76:99:0,193,2372 0/0:47,0:47:99:0,129,1526 0/0:57,0:57:99:0,168,2006 0/0:58,0:58:99:0,162,1961 0/0:52,0:52:99:0,147,1775 0/0:64,0:64:99:0,181,2179 1 241907817 . T C 49897.89 . AC=49;AF=0.583;AN=84;BaseQRankSum=-18.632;DP=3111;Dels=0.00;FS=7.401;HRun=0;HaplotypeScore=1.6869;InbreedingCoeff=0.0694;MQ=59.47;MQ0=1;MQRankSum=0.833;QD=21.31;ReadPosRankSum=-1.237 GT:AD:DP:GQ:PL 0/1:30,28:58:99:708,0,848 0/1:35,39:74:99:990,0,1016 0/1:26,28:54:99:713,0,751 0/1:44,58:102:99:1756,0,1183 1/1:0,108:110:99:3635,289,0 0/1:58,52:110:99:1358,0,1780 0/0:98,0:98:99:0,250,3202 1/1:3,96:99:99:3197,192,0 1/1:0,56:56:99:1807,156,0 0/1:22,20:42:99:459,0,649 1/1:0,67:68:99:2029,177,0 0/0:75,0:75:99:0,193,2401 0/0:63,0:63:99:0,162,1985 0/1:17,25:42:99:673,0,507 0/0:190,0:190:99:0,484,6015 0/1:22,19:41:99:522,0,649 0/1:32,36:68:99:833,0,832 1/1:0,56:57:99:1766,150,0 1/1:0,78:78:99:2476,214,0 0/1:35,51:86:99:1360,0,833 1/1:0,92:92:99:2948,259,0 1/1:0,51:51:99:1527,129,0 0/0:144,0:144:99:0,385,4845 0/1:49,47:96:99:1246,0,1403 0/0:87,0:87:99:0,235,2953 0/1:46,48:94:99:1367,0,1272 0/1:29,32:61:99:844,0,797 1/1:0,60:61:99:1927,168,0 0/0:66,0:66:99:0,184,2249 1/1:0,52:52:99:1628,141,0 0/1:34,18:52:99:430,0,965 1/1:0,106:107:99:3251,274,0 0/1:41,26:67:99:551,0,1222 1/1:0,50:50:99:1576,138,0 0/1:30,22:52:99:560,0,846 0/1:26,31:58:99:805,0,708 0/1:43,34:78:99:777,0,1182 1/1:0,64:64:99:2005,174,0 0/0:46,0:46:99:0,126,1543 1/1:0,64:64:99:2025,177,0 1/1:1,48:49:99:1504,107,0 0/1:26,23:49:99:646,0,720 1 241951329 . C T 8974.96 . AC=16;AF=0.190;AN=84;BaseQRankSum=10.107;DP=2203;Dels=0.00;FS=28.153;HRun=0;HaplotypeScore=0.6192;InbreedingCoeff=0.2279;MQ=59.48;MQ0=0;MQRankSum=1.534;QD=14.57;ReadPosRankSum=-0.517 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,111,1237 0/0:29,0:29:87.24:0,87,976 0/0:32,0:32:84.24:0,84,1006 0/0:100,0:100:99:0,250,3166 0/1:49,36:85:99:1043,0,1515 0/0:104,0:104:99:0,277,3440 0/0:84,0:84:99:0,229,2886 0/0:101,0:101:99:0,280,3513 0/1:30,19:49:99:473,0,850 0/0:33,0:33:90.25:0,90,1050 1/1:0,21:21:63.19:758,63,0 0/0:40,0:40:99:0,114,1327 0/0:43,0:43:99:0,117,1357 0/0:23,0:23:69.16:0,69,743 0/0:151,1:152:99:0,415,4809 0/1:17,10:27:99:291,0,463 0/1:27,9:36:99:232,0,738 0/0:42,0:42:99:0,120,1325 0/1:38,29:67:99:824,0,1012 0/1:28,21:49:99:604,0,734 0/0:61,0:61:99:0,168,1941 0/0:37,0:37:99:0,102,1164 0/0:120,0:120:99:0,316,3974 0/1:44,24:68:99:693,0,1284 0/0:85,0:85:99:0,229,2795 0/1:36,30:66:99:863,0,1005 0/0:28,0:28:81.22:0,81,912 0/0:47,0:47:99:0,126,1464 0/0:36,0:36:99:0,99,1162 0/0:25,1:26:75.21:0,75,853 0/0:28,0:28:84.24:0,84,976 0/0:53,0:53:99:0,141,1631 0/0:40,0:40:99:0,108,1272 0/0:41,0:41:99:0,117,1322 0/0:40,0:40:99:0,108,1248 0/0:48,0:48:99:0,126,1471 0/1:27,23:50:99:651,0,670 1/1:0,33:33:96.30:1180,96,0 0/0:42,0:42:99:0,120,1356 0/1:21,18:39:99:559,0,510 1/1:1,25:26:31.42:804,31,0 0/0:31,0:31:84.25:0,84,1005 1 242020721 . AGCGGGAATTGTGC A 1453.35 . AC=4;AF=0.048;AN=84;BaseQRankSum=9.814;DP=2935;DS;FS=308.249;HRun=0;HaplotypeScore=672.8270;InbreedingCoeff=-0.0500;MQ=58.84;MQ0=0;MQRankSum=8.448;QD=4.67;ReadPosRankSum=-13.947 GT:AD:DP:GQ:PL 0/0:41,0:41:88.51:0,89,6601 0/0:55,0:55:99:0,163,8425 0/1:45,26:71:99:277,0,6706 0/0:118,0:118:99:0,340,17666 0/0:106,0:106:99:0,221,16387 0/0:106,0:100:99:0,263,15540 0/0:108,0:106:99:0,244,15758 0/0:102,0:98:99:0,245,15325 0/0:46,0:46:99:0,132,7092 0/0:45,0:45:99:0,129,7349 0/0:57,0:57:99:0,163,9046 0/0:54,0:54:99:0,157,8447 0/0:49,0:49:99:0,144,8106 0/1:45,29:74:99:474,0,6687 0/0:143,0:143:99:0,430,24297 0/1:49,29:78:99:462,0,7385 0/0:60,0:60:99:0,172,9491 0/0:54,0:54:99:0,160,8690 0/0:76,0:76:99:0,190,11772 0/0:101,0:101:99:0,265,15760 0/0:77,0:77:99:0,211,10730 0/0:57,0:57:99:0,166,8393 0/0:112,0:112:99:0,331,17790 0/0:74,0:72:99:0,176,12144 0/0:107,0:103:99:0,313,17482 0/0:86,0:79:99:0,232,12179 0/0:29,0:29:84.28:0,84,4515 0/1:69,19:88:99:336,0,10520 0/0:48,0:48:99:0,138,7513 0/0:47,0:47:99:0,130,7580 0/0:65,0:65:99:0,162,11324 0/0:91,0:91:99:0,265,15160 0/0:49,0:49:99:0,138,7724 0/0:47,0:47:99:0,133,7319 0/0:48,0:48:99:0,138,8001 0/0:48,0:48:99:0,144,8317 0/0:77,0:77:99:0,226,11902 0/0:51,0:50:99:0,150,8259 0/0:46,0:46:99:0,138,7278 0/0:47,0:47:99:0,141,7924 0/0:50,0:50:99:0,115,7937 0/0:47,0:47:99:0,105,6697 1 242020728 . ATTGTGC A 1777.23 . AC=5;AF=0.060;AN=84;BaseQRankSum=9.641;DP=2570;FS=583.997;HRun=0;HaplotypeScore=337.5258;InbreedingCoeff=-0.0633;MQ=58.66;MQ0=0;MQRankSum=8.406;QD=4.90;ReadPosRankSum=-17.163 GT:AD:DP:GQ:PL 0/0:37,0:37:70.46:0,70,3464 0/0:46,0:46:99:0,100,4268 0/1:64,0:64:99:270,0,3318 0/0:90,0:90:99:0,225,8812 0/0:88,0:88:99:0,137,8358 0/0:84,0:80:99:0,197,7725 0/0:89,0:88:99:0,152,7776 0/0:89,0:84:99:0,197,7779 0/0:41,0:41:45.32:0,45,3372 0/0:40,0:40:99:0,114,4151 0/0:50,0:50:99:0,138,4819 0/0:44,0:44:99:0,123,4378 0/0:44,0:44:90.44:0,90,4209 0/1:68,0:68:99:410,0,3514 0/0:128,0:128:99:0,361,12688 0/1:70,0:70:99:433,0,3726 0/0:48,0:48:99:0,135,4823 0/0:42,0:42:99:0,117,4290 0/0:66,0:66:99:0,157,6346 0/0:95,0:95:99:0,241,8589 0/0:63,0:63:99:0,166,5888 0/0:43,0:43:99:0,120,4204 0/0:91,0:91:99:0,236,9140 0/0:67,0:66:99:0,128,6358 0/0:96,0:92:99:0,235,9096 0/0:74,0:68:99:0,190,6279 0/0:21,0:21:60.20:0,60,2124 0/1:85,0:85:99:326,0,5530 0/0:40,0:40:84.52:0,85,3804 0/1:42,34:76:99:445,0,3717 0/0:61,0:61:99:0,147,6103 0/0:86,0:86:99:0,241,8526 0/0:47,0:47:95.63:0,96,3890 0/0:37,0:37:99:0,105,3664 0/0:43,0:43:92.56:0,93,4203 0/0:46,0:46:99:0,104,4591 0/0:66,0:66:99:0,184,6084 0/0:42,0:42:99:0,114,3966 0/0:41,0:41:79.89:0,80,3712 0/0:42,0:42:99:0,117,4229 0/0:40,0:40:54.66:0,55,3824 0/0:39,0:39:53.58:0,54,3649 1 242020733 . G A 8.84 . 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C A 6330.43 . 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C CA 12103.78 . 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T A 1006.86 . 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C T 3724.97 . 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A G 2704.70 . 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G A 31343.28 . 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G C 1475.91 . 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C A 6083.91 . 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A G 867.77 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.411;DP=3006;DS;Dels=0.00;FS=4.009;HRun=0;HaplotypeScore=1.9887;InbreedingCoeff=-0.0120;MQ=53.39;MQ0=39;MQRankSum=3.686;QD=18.08;ReadPosRankSum=-0.446 GT:AD:DP:GQ:PL 0/0:79,0:79:99:0,208,2411 0/0:63,0:63:99:0,138,1552 0/0:24,0:24:39.10:0,39,437 0/0:93,0:93:99:0,241,2848 0/0:83,0:83:99:0,226,2656 0/0:68,0:68:99:0,187,2287 0/0:60,0:60:99:0,174,2051 0/0:79,0:79:99:0,208,2531 0/0:45,0:45:96.23:0,96,1101 0/0:67,0:67:99:0,165,1948 0/1:17,31:48:99:914,0,220 0/0:38,0:38:84.23:0,84,976 0/0:45,0:45:90.25:0,90,1046 0/0:76,0:76:99:0,193,2243 0/0:186,2:188:99:0,480,5742 0/0:50,0:50:99:0,138,1593 0/0:61,0:61:99:0,165,1897 0/0:56,0:56:99:0,138,1590 0/0:81,0:81:99:0,180,2097 0/0:127,0:127:99:0,313,3771 0/0:85,0:85:99:0,220,2608 0/0:70,0:70:99:0,189,2139 0/0:90,1:91:99:0,241,2890 0/0:74,0:74:99:0,193,2326 0/0:84,0:84:99:0,223,2709 0/0:47,0:47:99:0,102,1199 0/0:51,0:51:99:0,132,1502 0/0:85,0:85:99:0,229,2626 0/0:75,0:75:99:0,202,2283 0/0:65,0:65:99:0,162,1894 0/0:66,0:67:99:0,171,2011 0/0:117,0:117:99:0,295,3577 0/0:44,0:44:87.24:0,87,999 0/0:44,0:44:99:0,105,1217 0/0:45,0:45:99:0,111,1307 0/0:85,0:86:99:0,217,2562 0/0:94,0:94:99:0,214,2530 0/0:79,0:79:99:0,217,2443 0/0:57,0:57:99:0,153,1805 0/0:70,0:70:99:0,190,2196 0/0:68,0:69:99:0,178,2062 0/0:76,0:76:99:0,199,2348 1 245021528 . C A 1308.81 . AC=2;AF=0.024;AN=84;BaseQRankSum=-10.719;DP=2586;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8948;InbreedingCoeff=-0.0244;MQ=59.43;MQ0=0;MQRankSum=0.725;QD=12.58;ReadPosRankSum=-1.114 GT:AD:DP:GQ:PL 0/1:30,27:57:99:741,0,898 0/1:24,23:47:99:630,0,719 0/0:49,0:49:99:0,135,1753 0/0:98,0:98:99:0,274,3685 0/0:95,0:95:99:0,274,3771 0/0:85,0:85:99:0,244,3318 0/0:85,0:85:99:0,235,3241 0/0:100,0:100:99:0,262,3584 0/0:56,0:56:99:0,166,2131 0/0:32,0:32:93.28:0,93,1157 0/0:45,0:45:99:0,123,1587 0/0:55,0:55:99:0,163,2051 0/0:37,0:37:99:0,99,1291 0/0:45,0:45:99:0,123,1609 0/0:179,0:179:99:0,485,6298 0/0:41,0:41:99:0,108,1413 0/0:49,0:49:99:0,135,1718 0/0:54,0:54:99:0,153,1967 0/0:64,0:64:99:0,190,2419 0/0:77,0:77:99:0,208,2710 0/0:61,0:61:99:0,166,2102 0/0:38,0:38:96.31:0,96,1271 0/0:120,0:120:99:0,319,4422 0/0:86,0:86:99:0,223,3059 0/0:77,0:77:99:0,202,2807 0/0:82,0:82:99:0,226,3094 0/0:36,0:36:99:0,99,1260 0/0:55,0:55:99:0,150,1922 0/0:43,0:43:99:0,120,1556 0/0:41,0:41:99:0,120,1522 0/0:42,0:42:99:0,120,1549 0/0:52,0:52:99:0,144,1862 0/0:46,0:46:99:0,132,1703 0/0:47,0:47:99:0,129,1682 0/0:53,0:53:99:0,156,2002 0/0:62,0:62:99:0,172,2211 0/0:55,0:55:99:0,163,2032 0/0:53,0:53:99:0,141,1847 0/0:51,1:52:99:0,108,1768 0/0:38,0:38:99:0,108,1386 0/0:46,0:46:99:0,129,1635 0/0:51,0:51:99:0,144,1864 1 245165456 . C T 460.82 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.762;DP=1256;Dels=0.00;FS=6.577;HRun=1;HaplotypeScore=0.3645;InbreedingCoeff=-0.0244;MQ=59.35;MQ0=0;MQRankSum=0.740;QD=10.47;ReadPosRankSum=-1.328 GT:AD:DP:GQ:PL 0/0:30,0:30:78.23:0,78,965 0/0:32,0:32:87.24:0,87,1064 0/0:23,0:23:66.20:0,66,816 0/0:45,0:45:99:0,114,1545 0/0:31,0:31:87.26:0,87,1136 0/0:32,0:32:84.27:0,84,1116 0/0:23,0:23:63.19:0,63,820 0/0:26,0:26:75.24:0,75,973 0/0:27,0:27:75.22:0,75,917 0/0:19,0:19:48.14:0,48,588 0/0:25,0:25:69.21:0,69,853 0/0:23,0:23:66.20:0,66,806 0/0:23,0:23:63.20:0,63,798 0/0:23,0:23:66.18:0,66,783 0/0:83,0:83:99:0,217,2740 0/0:24,0:24:66.19:0,66,803 0/0:37,0:37:99:0,102,1263 0/0:26,0:26:69.20:0,69,834 0/0:43,0:43:99:0,108,1327 0/0:45,0:45:99:0,120,1503 0/0:42,1:43:80.74:0,81,1349 0/0:37,0:37:90.27:0,90,1130 0/0:20,0:20:60.19:0,60,783 0/0:14,0:14:42.14:0,42,559 0/0:35,0:35:90.30:0,90,1225 0/0:21,0:21:54.17:0,54,711 0/1:10,16:26:99:460,0,258 0/0:22,0:22:57.18:0,57,724 0/1:15,3:18:63.57:64,0,459 0/0:17,0:17:51.15:0,51,620 0/0:25,0:25:72.21:0,72,867 0/0:38,0:38:96.29:0,96,1199 0/0:34,0:34:90.29:0,90,1166 0/0:38,0:38:99:0,111,1339 0/0:32,0:32:90.25:0,90,1078 0/0:33,0:33:96.28:0,96,1157 0/0:37,0:37:96.29:0,96,1174 0/0:25,0:25:75.22:0,75,909 0/0:38,0:38:99:0,111,1362 0/0:25,0:25:72.21:0,72,882 0/0:14,0:14:42.13:0,42,523 0/0:24,0:24:66.18:0,66,799 1 245245402 . C T 38153.81 . AC=42;AF=0.500;AN=84;BaseQRankSum=-19.592;DP=3151;Dels=0.00;FS=41.860;HRun=0;HaplotypeScore=1.6683;InbreedingCoeff=0.0476;MQ=59.37;MQ0=1;MQRankSum=0.661;QD=17.01;ReadPosRankSum=-0.056 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1820,150,0 0/1:48,27:75:99:699,0,1412 0/0:64,0:64:99:0,172,2241 1/1:0,79:79:99:2710,214,0 1/1:0,86:86:99:2908,223,0 0/0:139,0:139:99:0,352,4833 0/0:105,0:105:99:0,280,3822 0/1:65,26:91:99:732,0,1940 0/1:38,28:66:99:791,0,1197 0/0:71,0:71:99:0,196,2461 0/1:34,16:50:99:420,0,1031 1/1:0,62:62:99:2077,166,0 0/1:49,30:79:99:788,0,1430 1/1:0,44:44:99:1458,117,0 0/1:137,78:217:99:1922,0,4112 0/1:30,15:45:99:394,0,939 0/1:30,32:62:99:960,0,932 1/1:0,61:61:99:2103,169,0 0/1:56,26:82:99:616,0,1633 0/1:63,30:93:99:797,0,1758 0/1:52,30:82:99:832,0,1462 0/1:34,15:49:99:350,0,1072 0/1:68,40:108:99:1103,0,2017 1/1:0,75:75:99:2470,187,0 0/1:66,36:102:99:1049,0,1916 1/1:0,72:72:99:2331,181,0 0/1:27,28:55:99:709,0,861 0/0:82,0:82:99:0,226,2870 1/1:0,37:37:99:1318,105,0 0/0:69,1:70:99:0,196,2475 0/0:66,0:66:99:0,184,2354 0/0:94,0:94:99:0,232,3059 0/0:75,0:75:99:0,196,2543 1/1:1,53:54:99:1811,114,0 1/1:2,44:46:69.59:1356,70,0 0/1:37,32:69:99:823,0,1107 0/0:80,0:80:99:0,208,2678 0/1:35,26:61:99:712,0,1043 0/0:62,0:62:99:0,166,2137 0/1:37,33:70:99:934,0,1118 0/1:43,19:62:99:538,0,1213 0/1:33,23:56:99:624,0,964 1 245772651 . C G 141.03 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.129;DP=960;Dels=0.00;FS=9.979;HRun=1;HaplotypeScore=0.4587;InbreedingCoeff=-0.0128;MQ=58.92;MQ0=0;MQRankSum=1.480;QD=10.07;ReadPosRankSum=-0.367 GT:AD:DP:GQ:PL 0/0:21,0:21:60.19:0,60,770 0/0:26,0:26:69.22:0,69,903 0/0:25,0:25:63.21:0,63,837 0/0:17,0:17:48.16:0,48,634 0/0:36,0:36:99:0,102,1394 0/0:22,0:22:63.21:0,63,870 0/0:21,0:21:51.16:0,51,692 0/0:18,0:18:48.16:0,48,657 0/0:21,0:21:57.18:0,57,732 0/0:18,0:18:42.12:0,42,529 0/0:19,0:19:48.15:0,48,600 0/0:14,0:14:42.13:0,42,536 0/0:22,0:22:54.17:0,54,697 0/0:19,0:19:54.16:0,54,675 0/0:58,0:58:99:0,147,1862 0/0:19,0:19:54.17:0,54,679 0/0:15,0:15:42.12:0,42,525 0/0:13,0:14:39.12:0,39,480 0/0:35,0:35:93.29:0,93,1168 0/0:51,0:51:99:0,135,1737 0/0:51,0:51:99:0,135,1738 0/1:8,6:14:99:187,0,256 0/0:27,0:27:75.25:0,75,1035 0/0:16,0:16:42.14:0,42,582 0/0:21,0:21:60.20:0,60,822 0/0:13,0:13:36.10:0,36,464 0/0:14,0:14:39.12:0,39,499 0/0:25,0:25:66.21:0,66,853 0/0:21,0:21:57.18:0,57,738 0/0:5,0:5:12.04:0,12,159 0/0:14,0:14:42.13:0,42,524 0/0:39,0:39:93.30:0,93,1237 0/0:17,0:17:51.16:0,51,649 0/0:18,0:18:54.17:0,54,680 0/0:17,0:17:48.15:0,48,619 0/0:13,0:13:36.11:0,36,460 0/0:33,0:34:90.28:0,90,1129 0/0:29,0:29:84.26:0,84,1062 0/0:18,0:18:51.16:0,51,646 0/0:17,0:17:48.15:0,48,608 0/0:21,0:21:51.15:0,51,652 0/0:24,0:24:66.21:0,66,840 1 245772692 . A C 222.76 . 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C T 21521.44 . 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C T 262.21 . 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C T 555.16 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.097;DP=3065;DS;Dels=0.00;FS=16.759;HRun=0;HaplotypeScore=1.0506;InbreedingCoeff=-0.0120;MQ=41.52;MQ0=294;MQRankSum=-1.688;QD=10.68;ReadPosRankSum=0.047 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,111,1408 0/0:70,0:70:99:0,153,1921 0/0:51,0:51:99:0,123,1534 0/0:111,0:111:99:0,244,3218 0/0:80,0:80:99:0,184,2435 0/0:69,0:69:99:0,175,2207 0/0:81,0:81:99:0,193,2447 0/0:84,0:84:99:0,196,2571 0/0:77,0:77:99:0,150,1885 0/0:64,0:64:99:0,153,1917 0/0:53,0:53:99:0,111,1396 0/0:66,0:66:99:0,156,1920 0/0:73,0:73:99:0,181,2190 0/0:62,0:62:99:0,141,1720 0/0:189,0:189:99:0,409,5086 0/0:55,0:55:99:0,120,1508 0/0:66,0:66:99:0,141,1767 0/0:74,0:74:99:0,169,2066 0/0:93,0:93:99:0,196,2352 0/0:82,0:82:99:0,181,2240 0/0:91,0:91:99:0,214,2600 0/0:45,0:45:99:0,105,1294 0/0:100,0:100:99:0,238,3119 0/0:77,0:77:99:0,181,2362 0/0:105,0:105:99:0,241,3131 0/0:78,0:78:99:0,208,2655 0/0:51,0:51:99:0,132,1610 0/0:72,0:72:99:0,178,2178 0/0:51,0:51:99:0,117,1448 0/0:60,0:60:99:0,150,1869 0/0:67,0:67:99:0,165,2021 0/0:92,0:92:99:0,199,2477 0/0:44,0:44:99:0,99,1260 0/0:74,0:74:99:0,153,1929 0/0:64,0:64:99:0,135,1684 0/0:59,0:59:99:0,129,1584 0/0:80,0:80:99:0,171,2144 0/0:76,0:76:99:0,172,2134 0/0:62,0:62:99:0,153,1915 0/0:58,0:58:99:0,123,1561 0/0:59,0:59:99:0,144,1793 0/1:28,24:52:99:601,0,787 1 247162658 . C T 63235.40 . 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G A 1782.51 . 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A C 465.73 . AC=12;AF=0.143;AN=84;BaseQRankSum=-26.351;DP=2898;Dels=0.00;FS=1409.694;HRun=2;HaplotypeScore=1.3901;InbreedingCoeff=-0.1927;MQ=58.65;MQ0=0;MQRankSum=0.106;QD=0.54;ReadPosRankSum=-19.226 GT:AD:DP:GQ:PL 0/0:43,15:58:80.36:0,80,1428 0/1:46,18:64:7.23:7,0,1483 0/0:36,18:54:99:0,105,1221 0/0:53,50:103:9.89:0,10,1622 0/1:51,57:108:99:221,0,1614 0/0:58,47:105:8.10:0,8,1852 0/1:37,39:76:15.39:15,0,1109 0/0:52,26:78:99:0,116,1780 0/1:35,19:54:37.75:38,0,1032 0/0:27,17:44:52.70:0,53,935 0/0:34,17:51:45.05:0,45,1073 0/1:30,22:52:57.01:57,0,889 0/0:33,24:57:2.51:1,0,980 0/0:32,17:49:17.36:0,17,1034 0/0:114,45:159:99:0,162,3677 0/0:32,21:53:95.49:0,95,1110 0/0:38,18:57:30.01:0,30,1186 0/1:40,22:62:14.41:14,0,1267 0/0:57,25:82:75.28:0,75,1897 0/0:68,33:101:99:0,105,2142 0/0:59,11:71:99:0,115,1967 0/0:25,10:35:46.49:0,46,791 0/1:67,57:124:20.21:20,0,2118 0/1:34,30:64:73.95:74,0,1057 0/0:47,38:85:77.44:0,77,1583 0/1:46,36:82:49.20:49,0,1422 0/0:21,15:36:32.51:0,33,659 0/0:43,23:66:1.22:0,1,1336 0/0:31,19:50:9.46:0,9,964 0/0:40,19:59:8.54:0,9,1206 0/1:40,21:62:51.82:52,0,1248 0/0:58,26:85:65.96:0,66,1745 0/0:24,20:44:66.15:0,66,760 0/1:30,21:51:44.47:44,0,924 0/1:38,24:62:9.37:9,0,1179 0/0:60,16:76:73.46:0,73,1991 0/0:62,23:85:12.40:0,12,1876 0/0:51,22:73:2.20:0,2,1376 0/0:45,18:63:99:0,101,1474 0/0:43,14:57:99:0,100,1475 0/0:22,12:34:18.21:0,18,685 0/0:44,23:67:69.60:0,70,1452 1 247719769 . G A 461.78 . 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A C 2684.29 . AC=2;AF=0.024;AN=84;BaseQRankSum=8.441;DP=5227;DS;Dels=0.00;FS=6.770;HRun=0;HaplotypeScore=2.3082;InbreedingCoeff=-0.0244;MQ=59.41;MQ0=1;MQRankSum=-0.645;QD=15.61;ReadPosRankSum=-1.701 GT:AD:DP:GQ:PL 0/0:94,0:94:99:0,256,3111 0/0:107,1:108:99:0,304,3645 0/0:73,0:73:99:0,202,2431 0/0:155,0:155:99:0,445,5440 0/0:176,0:176:99:0,490,6040 0/0:169,0:169:99:0,485,6185 0/0:163,0:163:99:0,463,5834 0/0:177,0:177:99:0,481,5971 0/0:117,0:117:99:0,334,4016 0/0:103,0:103:99:0,295,3509 0/0:104,0:105:99:0,289,3516 0/0:93,0:93:99:0,271,3259 0/0:97,0:97:99:0,268,3228 0/0:80,0:80:99:0,232,2722 0/0:249,0:250:99:0,698,8299 0/0:95,0:95:99:0,262,3184 0/0:108,0:108:99:0,295,3590 0/0:89,0:89:99:0,259,3056 0/0:125,1:126:99:0,349,4235 0/0:186,0:186:99:0,497,6131 0/0:147,0:148:99:0,421,5156 0/0:112,0:112:99:0,307,3736 0/0:176,0:176:99:0,512,6292 0/0:175,0:175:99:0,475,5932 0/0:155,0:155:99:0,445,5542 0/0:149,0:149:99:0,421,5175 0/0:99,0:99:99:0,280,3331 0/0:116,0:116:99:0,316,3809 0/0:101,0:101:99:0,277,3350 0/0:109,0:109:99:0,307,3738 0/0:101,0:101:99:0,289,3452 0/0:156,0:156:99:0,415,5142 0/0:104,0:104:99:0,283,3455 0/0:106,0:106:99:0,301,3651 0/0:109,0:109:99:0,298,3610 0/0:124,0:124:99:0,361,4334 0/0:139,0:139:99:0,385,4642 0/0:115,0:115:99:0,322,3891 0/0:94,0:94:99:0,268,3222 0/1:48,52:100:99:1609,0,1358 0/1:36,36:72:99:1137,0,959 0/0:103,0:103:99:0,301,3606 1 248023966 . C T 22037.60 . AC=24;AF=0.286;AN=84;BaseQRankSum=-0.375;DP=2729;Dels=0.00;FS=1.165;HRun=0;HaplotypeScore=1.7451;InbreedingCoeff=-0.1667;MQ=59.47;MQ0=0;MQRankSum=-0.453;QD=15.23;ReadPosRankSum=0.183 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,147,1757 0/1:26,24:50:99:645,0,733 0/1:24,19:43:99:501,0,630 0/1:74,34:109:99:821,0,2041 0/1:73,35:108:99:888,0,1992 0/0:82,0:82:99:0,226,2890 0/0:73,0:73:99:0,187,2448 0/0:81,0:81:99:0,199,2595 0/0:43,0:43:99:0,120,1434 0/1:24,36:60:99:1005,0,591 0/0:60,0:60:99:0,165,1960 0/0:48,0:48:99:0,135,1599 0/0:60,0:61:99:0,144,1755 0/1:31,24:55:99:684,0,871 1/1:0,168:168:99:5264,430,0 0/1:22,16:38:99:407,0,598 0/1:21,32:54:99:936,0,557 0/0:62,0:62:99:0,174,2020 0/1:49,44:93:99:1028,0,1177 1/1:0,73:73:99:2374,196,0 0/1:47,37:84:99:961,0,1174 0/1:25,20:45:99:538,0,645 0/0:103,0:103:99:0,262,3440 0/0:63,0:63:99:0,159,2086 0/0:75,0:75:99:0,178,2322 0/1:47,26:73:99:600,0,1351 0/0:40,0:40:99:0,108,1247 0/1:35,24:59:99:666,0,991 0/0:42,0:42:99:0,111,1324 0/1:27,24:51:99:644,0,697 0/0:35,0:35:96.27:0,96,1121 0/0:97,0:97:99:0,244,2944 0/1:18,31:49:99:766,0,504 0/0:59,1:60:99:0,132,1901 0/1:14,19:33:99:561,0,366 0/1:31,23:54:99:625,0,820 0/0:90,0:90:99:0,232,2695 0/0:56,0:57:99:0,141,1667 0/0:52,0:52:99:0,141,1674 0/1:24,28:52:99:794,0,635 0/1:20,26:46:99:722,0,545 0/1:27,23:50:99:607,0,728 1 249108721 . T C 361.29 . AC=9;AF=0.107;AN=84;BaseQRankSum=-18.867;DP=1629;Dels=0.00;FS=716.555;HRun=1;HaplotypeScore=1.2515;InbreedingCoeff=-0.1434;MQ=58.96;MQ0=0;MQRankSum=0.056;QD=1.02;ReadPosRankSum=-14.678 GT:AD:DP:GQ:PL 0/0:20,8:28:53.89:0,54,611 0/0:26,9:35:6.81:0,7,700 0/0:18,8:27:20.47:0,20,519 0/0:59,30:89:29.65:0,30,1855 0/0:48,17:65:99:0,106,1542 0/0:38,9:47:47.36:0,47,1265 0/0:25,9:34:15.84:0,16,721 0/0:30,11:41:45.71:0,46,860 0/0:18,11:29:13.76:0,14,494 0/0:21,5:26:51.12:0,51,602 0/1:22,13:35:37.97:38,0,589 0/0:20,7:27:2.92:0,0,535 0/0:23,5:28:57.17:0,57,695 0/0:20,6:26:34.46:0,34,615 0/1:72,37:109:45.40:45,0,2246 0/0:22,8:30:22.82:0,23,725 0/0:24,12:36:14.36:0,14,716 0/0:20,7:27:20.71:0,21,589 0/1:18,13:31:28:28,0,460 0/0:45,15:60:62.99:0,63,1281 0/0:38,13:51:47.52:0,48,1148 0/0:26,7:34:9.27:0,9,727 0/0:54,22:76:45.19:0,45,1743 0/0:29,7:36:75.24:0,75,953 0/0:37,10:47:99:0,104,1312 0/0:25,10:35:30.01:0,30,737 0/0:24,6:30:17.87:0,18,772 0/0:19,8:27:0.80:7,0,511 0/1:16,4:20:8.14:8,0,461 0/0:28,10:39:42.58:0,43,810 0/0:22,12:34:30.55:0,31,656 0/0:30,9:40:23:0,23,849 0/0:29,7:36:76.11:0,76,916 0/1:19,9:28:15.86:16,0,558 0/0:34,8:42:38.01:0,38,1025 0/0:22,8:30:54.16:0,54,652 0/1:25,20:45:99:241,0,782 0/1:21,10:31:67.91:68,0,609 0/1:14,11:25:11.24:11,0,349 0/0:21,9:30:27.68:0,28,663 0/1:19,10:29:24.30:24,0,475 0/0:24,9:34:34.55:0,35,717 10 323283 . A G 16477.27 . AC=19;AF=0.226;AN=84;BaseQRankSum=-8.361;DP=3175;DS;Dels=0.00;FS=11.563;HRun=0;HaplotypeScore=1.4495;InbreedingCoeff=-0.0202;MQ=59.03;MQ0=0;MQRankSum=0.915;QD=15.14;ReadPosRankSum=-2.461 GT:AD:DP:GQ:PL 0/1:36,28:64:99:689,0,1078 0/1:29,26:55:99:622,0,784 0/1:23,31:54:99:838,0,586 0/0:82,0:82:99:0,223,2691 0/0:66,0:66:99:0,184,2245 0/0:81,0:81:99:0,208,2655 0/1:26,27:53:99:806,0,709 0/1:44,22:66:99:632,0,1208 0/1:44,31:75:99:808,0,1208 1/1:0,61:61:99:2018,174,0 0/0:80,0:80:99:0,205,2494 0/1:21,33:55:99:878,0,569 0/1:25,25:50:99:664,0,682 0/0:71,0:71:99:0,196,2374 0/0:235,0:235:99:0,605,7332 0/0:68,0:68:99:0,184,2222 0/1:36,42:78:99:1140,0,904 0/0:65,0:65:99:0,190,2286 0/0:108,0:108:99:0,271,3276 0/0:101,0:101:99:0,280,3423 0/0:106,0:107:99:0,286,3431 0/0:79,0:80:99:0,211,2560 0/0:106,1:107:99:0,295,3603 0/0:63,0:63:99:0,159,2008 0/0:64,0:64:99:0,159,1986 0/0:54,0:54:99:0,144,1796 0/1:35,15:50:99:369,0,1065 0/1:42,39:81:99:1072,0,1102 0/0:60,0:60:99:0,156,1904 0/1:37,32:69:99:752,0,1033 0/0:56,0:56:99:0,163,1981 0/0:101,0:102:99:0,271,3311 0/1:39,34:73:99:897,0,1120 0/1:24,31:55:99:852,0,647 1/1:0,69:69:99:2224,193,0 0/0:60,1:61:99:0,169,2005 0/0:100,1:101:99:0,268,3276 0/1:36,44:80:99:1218,0,934 0/0:83,0:83:99:0,226,2741 0/0:64,0:64:99:0,184,2211 0/0:69,0:69:99:0,193,2321 0/0:59,0:59:99:0,162,1970 10 373048 . T C 2201.18 . AC=5;AF=0.060;AN=84;BaseQRankSum=2.647;DP=1420;Dels=0.00;FS=1.966;HRun=0;HaplotypeScore=1.1450;InbreedingCoeff=-0.0633;MQ=59.38;MQ0=0;MQRankSum=0.334;QD=13.26;ReadPosRankSum=-1.842 GT:AD:DP:GQ:PL 0/0:29,0:29:84.22:0,84,960 0/0:35,0:35:87.24:0,87,1017 0/0:21,0:21:60.16:0,60,675 0/0:71,0:71:99:0,192,2200 0/0:68,0:69:99:0,199,2256 0/0:46,0:46:99:0,129,1490 0/1:14,25:39:99:743,0,338 0/0:47,0:48:99:0,126,1456 0/0:18,0:19:45.13:0,45,534 0/0:24,0:24:72.18:0,72,818 0/0:28,0:28:84.20:0,84,943 0/0:28,0:28:72.21:0,72,857 0/0:31,0:33:90.24:0,90,1035 0/0:28,0:30:78.20:0,78,897 0/0:73,0:74:99:0,195,2189 0/0:27,0:27:78.19:0,78,885 0/1:15,18:33:99:473,0,383 0/0:23,0:24:66.15:0,66,738 0/0:39,0:40:99:0,108,1257 0/0:38,0:39:99:0,102,1203 0/0:42,0:42:99:0,120,1382 0/0:31,0:31:84.22:0,84,946 0/1:31,27:58:99:749,0,814 0/0:30,0:30:75.20:0,75,867 0/0:40,0:40:99:0,114,1288 0/0:49,0:50:99:0,138,1559 0/0:19,1:20:48.07:0,48,519 0/0:29,0:29:75.20:0,75,861 0/0:22,0:22:66.19:0,66,773 0/0:20,0:21:57.12:0,57,661 0/0:27,0:28:81.19:0,81,908 0/0:33,0:33:87.24:0,87,1018 0/0:34,0:34:96.26:0,96,1088 0/1:15,9:24:99:234,0,430 0/1:8,4:12:99:100,0,248 0/0:34,0:34:96.26:0,96,1104 0/0:35,0:35:99:0,102,1183 0/0:29,0:29:84.23:0,84,961 0/0:22,0:22:60.17:0,60,711 0/0:22,0:22:54.15:0,54,627 0/0:29,0:29:78.20:0,78,895 0/0:18,0:18:51.12:0,51,584 10 459940 . G A 30100.10 . 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G C 2826.62 . 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C T 1887.20 . 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G C 159.18 . 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C T 370.78 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.994;DP=328;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3373;InbreedingCoeff=-0.0472;MQ=59.00;MQ0=0;MQRankSum=1.509;QD=14.26;ReadPosRankSum=0.168 GT:AD:DP:GQ:PL 0/0:9,0:9:24.06:0,24,269 0/0:6,0:6:18.04:0,18,195 0/0:6,0:6:18.05:0,18,210 0/1:3,10:13:75.60:298,0,76 0/1:8,5:13:99:135,0,243 0/0:8,0:8:21.06:0,21,247 0/0:6,0:6:18.05:0,18,210 0/0:5,0:5:15.04:0,15,171 0/0:10,0:10:21.06:0,21,253 0/0:8,0:8:21.05:0,21,227 0/0:7,0:7:21.04:0,21,226 0/0:6,0:6:18.02:0,18,183 0/0:4,0:4:12.03:0,12,141 0/0:5,0:5:15.04:0,15,172 0/0:33,0:33:90.25:0,90,1057 0/0:8,0:8:24.06:0,24,266 0/0:6,0:6:18.04:0,18,194 0/0:8,0:8:24.06:0,24,264 0/0:8,0:8:21.06:0,21,237 0/0:13,0:13:36.10:0,36,413 0/0:6,0:6:15.04:0,15,178 0/0:11,0:11:27.07:0,27,311 0/0:14,0:14:39.11:0,39,445 0/0:6,0:6:15.04:0,15,176 0/0:13,0:13:33.10:0,33,387 0/0:4,0:4:12.02:0,12,124 0/0:5,0:5:12.03:0,12,127 0/0:8,0:8:18.05:0,18,198 0/0:3,0:3:9.02:0,9,102 0/0:4,0:4:12.01:0,12,121 0/0:7,0:7:18.04:0,18,183 0/0:7,0:7:18.04:0,18,196 0/0:5,0:5:15.05:0,15,189 0/0:1,0:1:3.01:0,3,39 0/0:6,0:6:15.04:0,15,170 0/0:3,0:3:9.02:0,9,102 0/0:13,1:14:0.50:0,1,353 0/0:6,0:6:18.05:0,18,200 0/0:4,0:4:12.03:0,12,128 0/0:8,0:8:24.07:0,24,278 0/0:6,0:6:12.03:0,12,131 0/0:5,0:5:15.04:0,15,169 10 1284349 . C A 170.50 . AC=2;AF=0.024;AN=82;BaseQRankSum=-2.076;DP=246;Dels=0.00;FS=3.392;HRun=0;HaplotypeScore=0.4624;InbreedingCoeff=-0.0551;MQ=58.23;MQ0=0;MQRankSum=0.018;QD=12.18;ReadPosRankSum=-0.379 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,182 0/0:7,0:7:15.05:0,15,197 0/0:8,0:8:21.04:0,21,243 0/0:6,0:6:15.05:0,15,201 0/0:3,0:3:9.02:0,9,96 0/0:2,0:4:6.02:0,6,76 0/0:6,0:6:18.05:0,18,222 0/0:5,0:5:15.04:0,15,187 0/0:8,0:8:24.07:0,24,293 0/0:7,0:7:21.07:0,21,270 0/0:8,0:8:21.07:0,21,263 0/0:4,0:4:12.03:0,12,131 0/0:4,0:4:12.04:0,12,150 0/0:6,0:6:18.02:0,18,200 0/0:24,0:24:63.18:0,63,762 0/0:9,0:9:24.08:0,24,306 0/0:3,0:3:9.03:0,9,114 0/0:7,0:7:21.06:0,21,242 0/0:9,0:9:24.07:0,24,297 0/0:6,0:6:18.04:0,18,209 0/0:3,0:3:9.02:0,9,95 0/0:8,0:8:21.07:0,21,265 0/0:7,0:7:21.06:0,21,264 0/0:2,0:2:6.02:0,6,81 0/0:4,0:4:12.04:0,12,154 0/0:2,0:2:6.02:0,6,82 0/0:3,0:3:9.02:0,9,92 0/0:2,0:2:6.02:0,6,75 0/0:4,0:4:12.03:0,12,129 ./. 0/0:3,0:3:9.03:0,9,115 0/0:9,0:9:21.06:0,21,244 0/0:6,0:6:15.05:0,15,187 0/0:5,0:5:15.04:0,15,178 0/0:9,0:9:21.07:0,21,273 0/0:4,0:4:12.04:0,12,140 0/0:11,0:11:30.09:0,30,374 0/0:3,0:3:9.03:0,9,103 0/0:6,0:6:18.05:0,18,216 0/1:3,4:7:86.69:111,0,87 0/0:2,0:2:6.02:0,6,75 0/1:3,4:7:89.48:121,0,89 10 3154461 . G A 11171.32 . AC=10;AF=0.119;AN=84;BaseQRankSum=6.163;DP=3649;DS;Dels=0.00;FS=0.190;HRun=0;HaplotypeScore=1.8215;InbreedingCoeff=-0.1351;MQ=59.18;MQ0=0;MQRankSum=-0.805;QD=13.84;ReadPosRankSum=1.278 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,168,2004 0/0:61,1:62:99:0,159,1948 0/0:61,0:61:99:0,162,1943 0/0:159,0:159:99:0,394,5081 0/0:125,0:125:99:0,325,4251 0/0:108,0:108:99:0,271,3524 0/0:103,0:103:99:0,241,3156 0/0:127,0:127:99:0,325,4243 0/1:27,33:60:99:909,0,693 0/0:59,0:60:99:0,153,1793 0/1:40,27:67:99:767,0,1096 0/0:75,0:75:99:0,193,2288 0/0:65,0:66:99:0,171,2097 0/0:65,0:65:99:0,162,1999 0/0:222,1:224:99:0,519,6688 0/0:73,0:73:99:0,190,2263 0/1:37,35:72:99:915,0,969 0/0:65,0:65:99:0,172,2072 0/0:120,0:121:99:0,295,3517 0/0:136,0:137:99:0,355,4343 0/1:59,75:134:99:2004,0,1377 0/0:85,0:85:99:0,208,2562 0/1:67,52:119:99:1483,0,1931 0/0:104,0:104:99:0,247,3237 0/0:80,0:80:99:0,205,2678 0/1:41,40:81:99:1116,0,1030 0/1:18,24:42:99:744,0,422 0/0:75,0:75:99:0,202,2426 0/1:45,26:71:99:728,0,1250 0/0:78,0:78:99:0,196,2387 0/0:64,0:64:99:0,175,2127 0/1:44,60:106:99:1651,0,1083 0/0:87,0:87:99:0,223,2725 0/0:48,0:48:99:0,141,1666 0/1:24,31:55:99:855,0,670 0/0:68,0:68:99:0,162,1996 0/0:122,0:122:99:0,301,3671 0/0:63,1:64:99:0,159,1930 0/0:69,0:69:99:0,178,2147 0/0:76,0:76:99:0,211,2498 0/0:62,1:63:99:0,134,1866 0/0:64,0:64:99:0,177,2146 10 3155620 . A G 16397.74 . 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C T 8836.50 . 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C T 18104.30 . AC=30;AF=0.357;AN=84;BaseQRankSum=18.498;DP=1890;Dels=0.00;FS=11.470;HRun=0;HaplotypeScore=1.8915;InbreedingCoeff=-0.0371;MQ=58.84;MQ0=0;MQRankSum=-0.635;QD=18.32;ReadPosRankSum=-0.331 GT:AD:DP:GQ:PL 0/0:36,0:36:96.24:0,96,1049 0/1:15,20:35:99:591,0,334 0/1:19,8:28:99:204,0,484 0/0:107,0:107:99:0,310,3516 0/0:78,0:78:99:0,229,2577 1/1:0,50:50:99:1801,147,0 0/1:33,17:50:99:403,0,979 1/1:0,53:53:99:1858,153,0 0/0:37,1:38:78.76:0,79,1159 0/1:14,16:30:99:443,0,319 0/0:23,1:24:27.57:0,28,645 0/0:33,0:34:90.19:0,90,979 0/0:31,0:31:81.17:0,81,867 0/1:26,12:38:99:323,0,687 0/0:110,0:111:99:0,316,3360 0/0:38,0:38:99:0,105,1159 0/1:10,21:31:99:630,0,190 0/1:15,19:34:99:452,0,409 0/1:28,25:53:99:645,0,612 0/0:61,0:61:99:0,177,1910 0/1:30,30:60:99:698,0,730 0/1:17,25:42:99:727,0,372 0/0:109,1:110:99:0,307,3529 0/0:43,0:43:99:0,120,1414 0/0:59,0:59:99:0,165,1933 0/1:27,19:46:99:561,0,730 0/0:24,0:24:72.17:0,72,777 0/1:13,17:30:99:500,0,239 0/1:8,12:20:99:352,0,177 0/0:34,0:34:96.21:0,96,1018 0/1:19,15:34:99:330,0,509 0/0:59,0:59:99:0,168,1812 0/1:18,22:40:99:625,0,441 0/1:18,20:39:99:627,0,435 1/1:0,30:30:87.27:1057,87,0 0/1:22,18:40:99:539,0,493 1/1:0,53:53:99:1728,147,0 0/1:18,16:34:99:462,0,405 1/1:0,27:27:78.20:905,78,0 0/1:12,26:38:99:823,0,259 0/0:15,0:15:42.09:0,42,437 0/1:26,27:53:99:821,0,578 10 3172145 . C T 6155.70 . 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G A 8021.26 . AC=4;AF=0.048;AN=84;BaseQRankSum=-0.748;DP=5658;DS;Dels=0.00;FS=5.393;HRun=0;HaplotypeScore=2.1833;InbreedingCoeff=-0.0500;MQ=56.86;MQ0=1;MQRankSum=5.696;QD=13.57;ReadPosRankSum=0.413 GT:AD:DP:GQ:PL 0/0:134,0:134:99:0,373,4507 0/0:107,0:107:99:0,310,3653 0/0:113,0:113:99:0,325,3842 0/0:186,0:186:99:0,545,6999 0/0:168,0:168:99:0,494,6432 0/0:159,0:159:99:0,469,6080 0/0:130,1:132:99:0,348,4904 0/0:117,0:117:99:0,343,4388 0/0:100,0:100:99:0,286,3373 0/0:92,0:92:99:0,274,3255 0/0:103,0:104:99:0,304,3550 0/0:113,0:113:99:0,316,3843 0/0:106,0:106:99:0,307,3619 0/0:105,0:105:99:0,310,3712 0/0:220,1:223:99:0,629,7400 0/0:96,0:96:99:0,277,3293 0/0:143,0:143:99:0,418,4969 0/0:98,0:99:99:0,268,3278 0/0:224,0:228:99:0,614,7416 0/0:241,0:243:99:0,677,8192 0/1:101,85:186:99:2395,0,2818 0/1:71,62:133:99:1800,0,2079 0/0:219,0:219:99:0,644,8382 0/0:132,0:132:99:0,364,4703 0/0:177,0:177:99:0,506,6607 0/0:140,0:140:99:0,406,5382 0/0:77,0:77:99:0,226,2643 0/0:111,1:112:99:0,287,3803 0/0:111,0:111:99:0,316,3798 0/0:98,0:99:99:0,283,3389 0/0:112,0:112:99:0,325,3957 0/0:198,0:198:99:0,560,6850 0/0:140,1:141:99:0,409,4904 0/0:102,1:104:99:0,272,3550 0/0:112,0:112:99:0,313,3723 0/0:102,0:102:99:0,304,3589 0/1:94,79:173:99:2192,0,2678 0/0:127,0:127:99:0,370,4358 0/1:43,55:98:99:1633,0,1172 0/0:121,1:122:99:0,325,4203 0/0:97,0:98:99:0,286,3403 0/0:116,0:116:99:0,334,3995 10 3208557 . A G 91747.64 . AC=62;AF=0.738;AN=84;BaseQRankSum=14.308;DP=4260;DS;Dels=0.00;FS=0.529;HRun=1;HaplotypeScore=3.4039;InbreedingCoeff=0.2610;MQ=51.09;MQ0=6;MQRankSum=-28.832;QD=25.65;ReadPosRankSum=-5.395 GT:AD:DP:GQ:PL 0/0:123,0:123:99:0,340,4196 0/1:49,34:83:99:920,0,1454 1/1:0,78:78:99:2697,232,0 0/1:55,57:112:99:1733,0,1545 1/1:0,103:103:99:3717,304,0 1/1:0,91:91:99:3222,265,0 0/1:59,28:87:99:763,0,1874 1/1:0,81:81:99:2772,229,0 1/1:0,78:78:99:2601,223,0 1/1:0,72:72:99:2388,205,0 1/1:1,91:92:99:3116,240,0 1/1:0,87:87:99:2953,256,0 1/1:0,75:75:99:2620,223,0 1/1:0,76:76:99:2567,223,0 0/0:236,0:236:99:0,641,7958 0/0:98,0:98:99:0,283,3442 0/1:59,38:97:99:984,0,1676 1/1:0,75:75:99:2577,220,0 0/1:89,71:160:99:1935,0,2672 0/1:103,90:193:99:2484,0,2891 1/1:0,137:137:99:4531,385,0 0/1:52,46:98:99:1342,0,1489 0/1:90,65:155:99:1951,0,2764 0/0:104,0:104:99:0,301,3836 0/0:121,1:122:99:0,304,4234 0/1:48,38:86:99:1136,0,1499 1/1:0,74:74:99:2542,217,0 1/1:0,82:82:99:2862,244,0 1/1:0,79:79:99:2761,235,0 1/1:1,77:78:99:2666,193,0 1/1:0,88:88:99:3007,256,0 0/1:76,66:142:99:1877,0,2196 1/1:0,94:95:99:3285,280,0 0/1:50,47:97:99:1377,0,1428 1/1:1,68:69:99:2218,154,0 0/1:53,56:109:99:1587,0,1453 1/1:0,119:120:99:3968,340,0 1/1:0,102:102:99:3323,286,0 1/1:0,91:91:99:3173,271,0 1/1:0,84:84:99:3001,253,0 1/1:0,64:64:99:2193,187,0 1/1:0,84:84:99:2898,244,0 10 3208567 . T G 72.95 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.766;DP=3749;DS;Dels=0.00;FS=106.724;HRun=1;HaplotypeScore=6.7278;InbreedingCoeff=-0.0244;MQ=49.80;MQ0=6;MQRankSum=5.973;QD=0.48;ReadPosRankSum=-13.583 GT:AD:DP:GQ:PL 0/0:116,0:116:99:0,325,4003 0/0:76,4:80:66.67:0,67,2311 0/0:65,3:68:93.90:0,94,2058 0/0:94,0:94:99:0,277,3305 0/0:84,3:87:99:0,129,2694 0/0:77,1:78:99:0,219,2551 0/0:75,0:75:99:0,220,2680 0/0:67,0:67:99:0,196,2244 0/0:64,4:68:89.06:0,89,1989 0/0:64,1:66:99:0,163,2115 0/0:80,3:83:99:0,140,2649 0/0:75,3:78:99:0,151,2423 0/0:59,6:65:44.38:0,44,1842 0/0:68,1:69:99:0,191,2201 0/0:223,0:223:99:0,608,7512 0/0:94,0:94:99:0,265,3260 0/0:80,2:82:99:0,186,2585 0/0:65,0:65:99:0,193,2195 0/0:143,0:143:99:0,403,4821 0/0:172,2:174:99:0,418,5687 0/0:116,0:116:99:0,334,3847 0/0:87,2:89:99:0,170,2832 0/0:140,2:142:99:0,347,4773 0/0:86,0:86:99:0,241,3006 0/0:107,0:107:99:0,286,3528 0/0:71,1:72:99:0,174,2436 0/0:64,4:68:64.02:0,64,2041 0/0:71,4:75:79.93:0,80,2288 0/1:59,8:67:80.54:81,0,1827 0/0:62,2:64:99:0,156,2091 0/0:78,2:80:99:0,190,2535 0/0:115,2:118:99:0,274,3924 0/0:76,3:79:99:0,125,2497 0/0:79,2:81:99:0,185,2597 0/0:56,1:57:99:0,125,1813 0/0:94,3:97:99:0,173,3064 0/0:96,1:97:99:0,248,3201 0/0:83,6:89:52.30:0,52,2515 0/1:76,9:85:54.81:55,0,2317 0/0:70,3:73:99:0,145,2304 0/0:51,3:54:93.74:0,94,1671 0/0:71,4:75:91.55:0,92,2241 10 3208567 . T TGCACGCTAGGGAAGAGAGAGG 396561.55 . 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T G 1165.44 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.976;DP=2057;Dels=0.04;FS=2.447;HRun=1;HaplotypeScore=33.3077;InbreedingCoeff=-0.0244;MQ=58.71;MQ0=0;MQRankSum=0.741;QD=16.65;ReadPosRankSum=0.377 GT:AD:DP:GQ:PL 0/0:40,1:41:99:0,111,1339 0/0:42,1:43:99:0,99,1187 0/0:39,0:39:99:0,111,1312 0/0:45,1:46:99:0,111,1318 0/0:55,2:57:99:0,138,1688 0/0:41,1:42:93.28:0,93,1147 0/0:42,0:42:99:0,111,1345 0/0:53,0:53:99:0,126,1528 0/0:43,0:43:99:0,120,1421 0/0:47,1:48:99:0,132,1574 0/0:45,0:45:99:0,132,1581 0/0:41,0:41:99:0,111,1331 0/0:48,1:49:99:0,126,1473 0/0:42,1:43:99:0,114,1348 0/0:100,0:101:99:0,286,3385 0/0:48,0:48:99:0,135,1587 0/0:41,0:41:99:0,111,1308 0/0:38,1:39:93.28:0,93,1111 0/0:53,0:53:99:0,147,1777 0/0:84,0:84:99:0,229,2689 0/0:66,0:66:99:0,184,2207 0/0:41,1:42:99:0,114,1342 0/0:43,0:43:99:0,111,1331 0/0:37,0:37:99:0,99,1228 0/0:37,2:40:99:0,105,1260 0/0:38,0:38:99:0,105,1276 0/1:17,20:37:99:654,0,478 0/0:33,1:34:87.24:0,87,1012 0/1:14,19:33:99:574,0,378 0/0:48,0:48:99:0,135,1606 0/0:35,0:35:93.24:0,93,1073 0/0:46,1:47:99:0,135,1599 0/0:41,0:41:99:0,111,1302 0/0:43,0:43:99:0,105,1264 0/0:46,1:47:99:0,111,1314 0/0:47,0:47:99:0,132,1549 0/0:70,1:71:99:0,187,2238 0/0:42,0:42:99:0,114,1366 0/0:40,1:41:99:0,114,1360 0/0:43,0:43:99:0,117,1375 0/0:41,0:41:99:0,102,1195 0/0:59,0:59:99:0,159,1918 10 4879755 . C A 317.70 . AC=6;AF=0.071;AN=84;BaseQRankSum=-15.974;DP=2356;Dels=0.04;FS=779.383;HRun=2;HaplotypeScore=23.2948;InbreedingCoeff=-0.1080;MQ=58.82;MQ0=0;MQRankSum=0.146;QD=1.04;ReadPosRankSum=-10.712 GT:AD:DP:GQ:PL 0/0:31,17:48:18.41:0,18,898 0/0:30,17:47:53.83:0,54,998 0/0:33,17:50:40.25:0,40,1089 0/1:26,28:54:15.90:16,0,881 0/1:37,27:64:75.93:76,0,1295 0/1:24,32:56:99:120,0,851 0/0:29,24:53:4.97:0,5,1049 0/0:39,22:61:1.58:4,0,1297 0/0:34,15:49:27.44:0,27,1151 0/0:39,18:57:87.74:0,88,1377 0/0:37,2:39:99:0,111,1390 0/0:34,18:52:35.41:0,35,1100 0/0:36,22:58:1.51:4,0,1078 0/0:37,12:49:72.81:0,73,1212 0/0:87,8:96:99:0,262,3214 0/0:42,18:60:90.16:0,90,1439 0/0:37,21:58:40.23:0,40,1132 0/1:27,13:40:13.99:14,0,853 0/0:51,8:59:99:0,150,1848 0/0:67,32:100:95.26:0,95,2027 0/0:51,16:67:81.59:0,82,1771 0/0:34,14:48:17.78:0,18,1090 0/0:31,28:59:46.39:0,46,1053 0/0:28,3:31:84.25:0,84,1104 0/0:26,19:45:39.66:0,40,907 0/0:30,15:45:2.47:1,0,1052 0/0:33,5:38:90.28:0,90,1120 0/1:20,19:39:99:104,0,659 0/0:26,8:34:44.80:0,45,880 0/0:41,23:64:57.83:0,58,1355 0/0:31,7:39:23.31:0,23,911 0/0:36,28:64:36.42:0,36,1077 0/0:33,4:37:90.26:0,90,1110 0/0:33,20:53:44.94:0,45,1037 0/0:32,19:51:22.49:0,22,977 0/0:35,16:51:71.89:0,72,1234 0/0:58,12:70:99:0,100,1915 0/0:43,22:65:65.38:0,65,1468 0/0:29,23:52:29.42:0,29,891 0/0:33,19:52:38.20:0,38,1107 0/1:30,22:52:88.57:89,0,943 0/0:48,18:66:46.84:0,47,1528 10 4879755 . C CA 454.64 . 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C T 16789.18 . 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T C 6441.87 . AC=29;AF=0.345;AN=84;BaseQRankSum=1.986;DP=7503;DS;Dels=0.00;FS=511.243;HRun=0;HaplotypeScore=0.7176;InbreedingCoeff=-0.4228;MQ=10.73;MQ0=6122;MQRankSum=2.478;QD=1.25;ReadPosRankSum=0.568 GT:AD:DP:GQ:PL 0/1:89,72:161:99:102,0,444 0/1:86,70:156:88.22:88,0,226 0/1:83,70:153:39.81:40,0,783 0/1:120,95:215:99:182,0,603 0/0:126,80:206:60.10:0,60,623 0/1:128,84:213:99:108,0,595 0/1:110,91:201:99:250,0,380 0/1:110,84:194:61:61,0,710 0/0:115,73:188:60.07:0,60,584 0/0:81,47:128:21.38:0,21,416 0/0:76,52:128:45.06:0,45,444 0/1:47,98:145:99:101,0,296 0/1:34,84:118:99:232,0,170 0/0:91,56:147:20.94:0,21,489 0/1:59,190:250:99:254,0,259 0/0:75,51:126:20.11:0,20,506 0/1:47,126:173:99:115,0,374 0/1:55,104:159:99:262,0,495 0/1:77,172:250:99:512,0,441 0/0:161,86:247:87.02:0,87,1128 0/0:149,100:250:33.09:0,33,883 0/0:93,67:160:37.32:0,37,688 0/1:137,111:250:63.47:63,0,628 0/1:106,81:187:99:174,0,371 0/1:55,119:174:99:320,0,197 0/1:43,128:171:99:296,0,183 0/1:82,50:132:99:176,0,334 0/1:107,65:172:33.99:34,0,483 0/1:53,107:160:99:404,0,195 0/1:113,65:178:99:124,0,598 0/1:96,74:170:99:241,0,666 0/1:145,100:245:76.25:76,0,863 0/0:77,71:148:54.08:0,54,540 0/1:52,107:159:99:560,0,156 0/1:47,106:154:99:330,0,307 0/1:114,80:194:99:163,0,701 0/1:73,176:250:99:269,0,336 0/0:87,78:165:24.40:0,24,454 1/1:0,153:154:84.16:904,84,0 0/0:95,69:164:63.11:0,63,653 0/0:90,61:151:66.10:0,66,668 0/0:94,63:157:36.05:0,36,357 10 5136651 . C G 70243.19 . 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G A 122156.86 . AC=65;AF=0.774;AN=84;BaseQRankSum=-24.719;DP=4687;DS;Dels=0.00;FS=7.653;HRun=3;HaplotypeScore=1.8009;InbreedingCoeff=0.1158;MQ=59.65;MQ0=0;MQRankSum=1.148;QD=27.73;ReadPosRankSum=-1.481 GT:AD:DP:GQ:PL 1/1:0,93:93:99:3277,268,0 1/1:1,89:90:99:3009,215,0 1/1:0,73:73:99:2535,205,0 0/1:101,91:192:99:2641,0,3203 0/1:85,77:162:99:2328,0,2724 1/1:0,143:143:99:5229,403,0 1/1:0,161:161:99:5696,442,0 1/1:0,134:134:99:4788,382,0 0/1:40,54:95:99:1621,0,1245 0/1:42,45:87:99:1283,0,1271 0/1:48,45:94:99:1291,0,1526 0/0:97,0:97:99:0,268,3450 0/0:81,0:81:99:0,226,2884 0/1:43,32:75:99:880,0,1361 0/1:129,121:250:99:3477,0,3798 1/1:0,67:67:99:2310,193,0 0/1:49,55:104:99:1557,0,1469 1/1:0,93:93:99:3249,262,0 1/1:0,129:129:99:4365,349,0 1/1:0,150:150:99:5135,412,0 1/1:0,143:143:99:4867,391,0 1/1:0,87:87:99:3063,253,0 1/1:0,174:174:99:6354,509,0 1/1:0,128:129:99:4533,352,0 1/1:0,151:151:99:5474,430,0 1/1:0,122:122:99:4378,346,0 1/1:0,75:75:99:2537,205,0 1/1:0,68:68:99:2380,193,0 0/1:37,31:68:99:893,0,1148 1/1:0,84:84:99:2858,232,0 1/1:0,85:85:99:2933,238,0 1/1:0,145:145:99:4988,400,0 1/1:0,68:68:99:2338,190,0 0/1:49,50:99:99:1478,0,1589 1/1:0,90:90:99:3050,247,0 0/1:62,54:116:99:1546,0,1898 1/1:0,114:115:99:3853,307,0 1/1:0,102:102:99:3445,277,0 1/1:0,94:94:99:3368,277,0 0/0:103,1:104:99:0,254,3654 0/1:38,46:84:99:1383,0,1125 0/1:54,57:111:99:1765,0,1608 10 5203864 . C T 22275.24 . 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G A 875.56 . 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A G 157246.66 . 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T C 262480.65 . AC=84;AF=1.000;AN=84;BaseQRankSum=1.922;DP=7746;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.4509;InbreedingCoeff=0.0000;MQ=59.62;MQ0=0;MQRankSum=0.044;QD=33.89;ReadPosRankSum=-0.275 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4979,394,0 1/1:0,141:141:99:4546,358,0 1/1:0,161:161:99:5320,421,0 1/1:0,250:250:99:8800,659,0 1/1:0,250:250:99:8974,665,0 1/1:0,246:246:99:9061,674,0 1/1:0,250:250:99:8734,644,0 1/1:0,250:250:99:9050,674,0 1/1:0,200:201:99:6653,527,0 1/1:0,142:142:99:4689,376,0 1/1:0,138:138:99:4584,361,0 1/1:0,139:139:99:4660,373,0 1/1:0,154:154:99:4959,394,0 1/1:0,124:124:99:4294,343,0 1/1:1,248:249:99:8093,633,0 1/1:0,106:106:99:3435,277,0 1/1:0,153:153:99:5067,403,0 1/1:0,151:151:99:5209,418,0 1/1:1,248:249:99:7808,598,0 1/1:0,245:245:99:8045,635,0 1/1:0,243:243:99:8020,653,0 1/1:0,154:154:99:4966,391,0 1/1:0,249:249:99:9116,674,0 1/1:0,249:249:99:8810,653,0 1/1:0,249:249:99:9049,674,0 1/1:0,250:250:99:8770,647,0 1/1:0,128:128:99:4373,352,0 1/1:0,150:150:99:4935,394,0 1/1:0,131:131:99:4385,349,0 1/1:0,159:159:99:5369,424,0 1/1:1,129:130:99:4482,361,0 1/1:0,247:247:99:8257,644,0 1/1:0,189:189:99:6135,487,0 1/1:0,174:174:99:5712,454,0 1/1:0,150:150:99:5118,412,0 1/1:0,147:147:99:4868,385,0 1/1:0,250:250:99:8026,647,0 1/1:0,147:147:99:4924,394,0 1/1:0,161:161:99:5450,436,0 1/1:0,149:149:99:5016,397,0 1/1:0,149:149:99:4885,391,0 1/1:0,140:140:99:4855,388,0 10 5762874 . C T 967.32 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.167;DP=2711;Dels=0.00;FS=1.330;HRun=0;HaplotypeScore=1.0651;InbreedingCoeff=-0.0120;MQ=59.46;MQ0=0;MQRankSum=-0.310;QD=13.44;ReadPosRankSum=0.990 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,126,1620 0/0:51,0:51:99:0,114,1491 0/0:55,0:55:99:0,138,1766 0/0:126,0:126:99:0,295,4060 0/0:105,0:105:99:0,274,3710 0/0:118,0:118:99:0,298,4016 0/0:100,0:100:99:0,259,3478 0/0:107,0:107:99:0,280,3762 0/0:63,0:63:99:0,163,2087 0/0:53,0:53:99:0,132,1665 0/0:57,0:57:99:0,159,1979 0/0:49,0:49:99:0,129,1635 0/0:52,0:52:99:0,135,1715 0/0:43,0:43:99:0,120,1510 0/0:174,0:175:99:0,439,5554 0/0:38,0:38:99:0,108,1354 0/0:52,0:52:99:0,132,1693 0/0:54,0:54:99:0,141,1783 0/0:51,0:51:99:0,135,1749 0/0:57,0:57:99:0,144,1870 0/0:52,0:52:99:0,132,1691 0/0:32,0:32:81.25:0,81,1027 0/0:120,0:120:99:0,295,4033 0/0:92,0:93:99:0,211,2939 0/0:121,0:121:99:0,310,4238 0/1:36,36:72:99:1014,0,1031 0/0:38,0:38:99:0,108,1371 0/0:55,0:55:99:0,138,1759 0/0:43,0:43:99:0,111,1398 0/0:40,0:40:99:0,102,1299 0/0:44,0:45:99:0,114,1449 0/0:49,0:49:99:0,117,1525 0/0:36,0:36:84.26:0,84,1077 0/0:48,0:48:99:0,132,1650 0/0:50,0:50:99:0,132,1668 0/0:70,0:70:99:0,181,2316 0/0:39,0:39:96.29:0,96,1224 0/0:33,0:33:84.26:0,84,1080 0/0:50,0:50:99:0,138,1700 0/0:70,0:70:99:0,184,2348 0/0:44,1:45:87.23:0,87,1437 0/0:53,0:53:99:0,144,1822 10 5803368 . A G 3353.76 . AC=1;AF=0.012;AN=84;BaseQRankSum=15.351;DP=4186;DS;Dels=0.00;FS=6.372;HRun=0;HaplotypeScore=0.6657;InbreedingCoeff=-0.0120;MQ=59.61;MQ0=0;MQRankSum=1.394;QD=16.05;ReadPosRankSum=0.686 GT:AD:DP:GQ:PL 0/0:68,0:68:99:0,196,2404 0/0:57,0:57:99:0,159,1946 0/0:72,0:72:99:0,214,2582 0/0:224,1:225:99:0,596,7879 0/0:219,0:219:99:0,620,7883 0/0:182,0:182:99:0,527,6774 0/0:166,0:166:99:0,469,6072 0/0:153,0:153:99:0,442,5606 0/0:66,0:66:99:0,187,2263 0/0:62,0:62:99:0,172,2098 0/0:69,1:70:99:0,154,2293 0/0:84,0:84:99:0,232,2862 0/0:66,0:66:99:0,193,2346 0/0:72,0:72:99:0,205,2507 0/0:245,0:245:99:0,677,8247 0/0:53,0:53:99:0,153,1878 0/0:88,0:88:99:0,256,3127 0/0:86,0:86:99:0,250,3033 0/0:92,0:93:99:0,262,3228 0/0:94,0:94:99:0,268,3326 0/0:90,0:91:99:0,253,3102 0/0:73,0:73:99:0,214,2599 0/1:108,101:209:99:3354,0,3276 0/0:135,0:135:99:0,373,4793 0/0:149,0:149:99:0,394,5031 0/0:150,0:150:99:0,424,5395 0/0:50,0:50:99:0,141,1738 0/0:86,0:86:99:0,247,2987 0/0:60,0:60:99:0,163,2011 0/0:64,0:64:99:0,181,2223 0/0:54,0:54:99:0,156,1916 0/0:85,0:85:99:0,232,2876 0/0:51,0:51:99:0,150,1814 0/0:78,0:78:99:0,223,2724 0/0:63,0:63:99:0,187,2264 0/0:88,0:88:99:0,244,2992 0/0:95,0:95:99:0,277,3366 0/0:74,0:74:99:0,211,2557 0/0:82,0:82:99:0,241,2923 0/0:79,0:80:99:0,226,2768 0/0:75,0:75:99:0,214,2618 0/0:73,0:73:99:0,220,2639 10 5804531 . G A 80048.41 . AC=69;AF=0.821;AN=84;BaseQRankSum=-17.626;DP=3103;Dels=0.00;FS=18.340;HRun=1;HaplotypeScore=0.8026;InbreedingCoeff=0.1072;MQ=58.49;MQ0=0;MQRankSum=1.490;QD=27.02;ReadPosRankSum=1.107 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2386,196,0 0/1:38,41:79:99:1150,0,1127 0/0:66,1:67:99:0,152,2349 0/1:57,40:97:99:1096,0,1697 0/1:67,35:102:99:973,0,2284 1/1:0,73:73:99:2693,211,0 1/1:0,63:63:99:2406,184,0 1/1:0,77:77:99:2794,217,0 1/1:0,80:80:99:2634,217,0 1/1:0,66:66:99:2216,181,0 1/1:0,67:67:99:2225,181,0 1/1:0,61:61:99:2010,162,0 1/1:0,59:59:99:1971,159,0 1/1:0,66:66:99:2361,193,0 0/1:96,89:185:99:2450,0,2676 1/1:0,36:36:99:1308,105,0 0/1:39,38:77:99:1105,0,1078 1/1:0,89:89:99:3041,250,0 1/1:0,89:89:99:3065,247,0 1/1:0,93:93:99:3165,256,0 1/1:0,77:77:99:2543,205,0 1/1:0,56:56:99:1982,162,0 0/1:48,38:86:99:1076,0,1586 1/1:1,71:72:99:2534,165,0 0/1:53,36:89:99:1075,0,1706 1/1:1,76:77:99:2607,168,0 1/1:0,40:40:99:1360,108,0 1/1:0,52:52:99:1751,144,0 1/1:0,53:53:99:1759,141,0 0/1:37,31:68:99:893,0,1131 0/1:30,22:52:99:647,0,963 1/1:0,90:90:99:2910,238,0 1/1:1,64:65:99:2068,136,0 1/1:0,69:69:99:2384,196,0 1/1:0,70:70:99:2360,193,0 1/1:0,73:73:99:2506,205,0 1/1:0,72:72:99:2362,190,0 0/1:40,28:68:99:848,0,1192 1/1:0,66:66:99:2288,187,0 0/1:42,29:71:99:789,0,1312 1/1:0,68:68:99:2255,181,0 0/0:73,0:73:99:0,211,2654 10 5808086 . G A 42442.49 . AC=19;AF=0.226;AN=84;BaseQRankSum=-11.807;DP=4916;DS;Dels=0.00;FS=16.162;HRun=0;HaplotypeScore=1.5942;InbreedingCoeff=0.2518;MQ=59.53;MQ0=2;MQRankSum=1.050;QD=19.93;ReadPosRankSum=0.763 GT:AD:DP:GQ:PL 0/0:79,0:80:99:0,226,2845 0/0:85,0:85:99:0,241,3081 0/0:81,1:82:99:0,197,2903 0/1:106,102:208:99:3085,0,3437 0/1:94,93:187:99:2848,0,3141 1/1:1,201:202:99:7557,571,0 1/1:0,155:155:99:5729,442,0 0/1:75,84:159:99:2621,0,2497 0/0:114,0:114:99:0,307,3953 0/0:77,0:77:99:0,223,2818 0/0:111,1:112:99:0,288,4011 0/0:101,0:101:99:0,292,3725 0/1:29,42:71:99:1263,0,873 0/0:89,0:90:99:0,250,3160 0/1:126,112:238:99:3139,0,3759 1/1:1,80:81:99:2832,200,0 0/0:91,0:91:99:0,250,3182 0/0:95,0:95:99:0,274,3478 0/0:131,0:133:99:0,364,4658 0/0:138,0:138:99:0,394,5054 0/1:73,73:146:99:2140,0,2243 0/1:31,37:68:99:1080,0,966 0/1:105,90:195:99:2797,0,3515 0/0:159,0:159:99:0,460,6173 0/0:171,0:171:99:0,479,6436 0/1:100,91:192:99:2803,0,3355 1/1:0,71:71:99:2533,205,0 0/1:43,37:80:99:1086,0,1257 0/1:46,31:77:99:927,0,1459 0/0:92,0:92:99:0,253,3218 0/0:77,0:77:99:0,223,2827 0/0:117,0:117:99:0,313,4069 0/0:77,1:78:99:0,220,2779 0/0:115,0:115:99:0,328,4167 0/0:92,0:92:99:0,265,3367 0/0:128,0:129:99:0,367,4687 0/0:116,0:116:99:0,310,3906 0/0:105,0:105:99:0,313,3943 0/0:83,1:84:99:0,211,3003 0/0:69,0:69:99:0,202,2550 0/0:86,0:87:99:0,244,3038 0/0:97,0:97:99:0,274,3501 10 5925971 . C A 66886.44 . AC=77;AF=0.917;AN=84;BaseQRankSum=-14.804;DP=2369;Dels=0.00;FS=3.594;HRun=0;HaplotypeScore=1.0815;InbreedingCoeff=-0.0909;MQ=59.19;MQ0=1;MQRankSum=-0.810;QD=28.23;ReadPosRankSum=-0.596 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1616,132,0 1/1:0,43:43:99:1412,117,0 1/1:0,36:36:99:1223,102,0 0/1:64,42:106:99:1111,0,1892 0/1:40,53:93:99:1404,0,1212 1/1:0,54:54:99:1713,135,0 1/1:0,69:69:99:2213,175,0 1/1:1,41:42:66.02:1263,66,0 1/1:0,59:59:99:1729,138,0 1/1:0,39:39:99:1278,102,0 1/1:0,44:44:99:1444,117,0 1/1:0,44:44:99:1407,117,0 1/1:0,24:24:66.19:782,66,0 1/1:0,43:43:99:1486,123,0 1/1:0,176:176:99:5387,436,0 1/1:0,47:47:99:1512,126,0 1/1:0,41:41:99:1356,111,0 0/1:22,19:41:99:510,0,528 0/1:27,40:67:99:1035,0,651 1/1:0,77:78:99:2492,205,0 1/1:0,70:70:99:2203,181,0 1/1:0,45:46:99:1458,120,0 1/1:1,92:93:99:2962,238,0 1/1:1,63:65:99:1939,153,0 1/1:0,53:53:99:1657,132,0 1/1:0,59:59:99:1846,144,0 1/1:0,28:28:75.23:932,75,0 1/1:0,53:54:99:1806,150,0 0/1:29,26:55:99:675,0,786 1/1:1,55:57:99:1778,144,0 1/1:0,34:34:93.28:1129,93,0 1/1:0,52:52:99:1729,144,0 1/1:0,48:48:99:1550,126,0 0/1:26,33:59:99:914,0,709 1/1:0,53:53:99:1735,144,0 0/1:29,23:52:99:631,0,835 1/1:0,78:78:99:2353,193,0 1/1:0,59:59:99:1954,165,0 1/1:0,32:32:87.24:1044,87,0 1/1:0,34:34:87.26:1065,87,0 1/1:0,37:37:99:1295,108,0 1/1:0,57:57:99:1859,150,0 10 5926034 . T C 430.33 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.289;DP=1519;Dels=0.00;FS=1.508;HRun=0;HaplotypeScore=0.7610;InbreedingCoeff=-0.0120;MQ=59.22;MQ0=1;MQRankSum=0.128;QD=20.49;ReadPosRankSum=-0.004 GT:AD:DP:GQ:PL 0/0:32,0:32:87.27:0,87,1092 0/0:25,0:25:72.22:0,72,887 0/0:22,0:22:63.17:0,63,769 0/0:66,0:66:99:0,184,2354 0/0:54,0:54:99:0,153,1998 0/0:34,0:34:96.31:0,96,1264 0/0:35,0:35:99:0,102,1307 0/0:29,0:29:78.25:0,78,1028 0/0:31,0:31:87.26:0,87,1076 0/0:24,0:24:69.20:0,69,840 0/0:21,0:21:63.19:0,63,769 0/0:22,0:22:66.20:0,66,797 0/0:22,0:22:60.19:0,60,748 0/0:36,0:36:99:0,108,1321 0/0:108,0:109:99:0,295,3664 0/0:23,0:23:66.20:0,66,812 0/0:25,0:25:72.22:0,72,883 0/0:25,0:25:69.22:0,69,866 0/0:49,0:49:99:0,132,1646 0/0:57,1:58:99:0,150,1904 0/0:44,0:44:99:0,123,1566 0/0:35,0:35:96.30:0,96,1205 0/0:66,0:66:99:0,175,2253 0/0:44,0:44:99:0,126,1639 0/0:39,0:39:99:0,111,1448 0/0:42,0:42:99:0,117,1518 0/0:15,0:15:45.14:0,45,550 0/0:38,0:38:99:0,102,1267 0/0:33,0:33:96.29:0,96,1178 0/0:42,0:42:99:0,120,1467 0/1:7,14:21:99:477,0,193 0/0:41,0:41:99:0,105,1333 0/0:26,0:26:75.23:0,75,922 0/0:31,0:31:90.27:0,90,1108 0/0:34,0:34:93.29:0,93,1178 0/0:34,0:34:96.30:0,96,1193 0/0:44,0:44:99:0,129,1557 0/0:34,0:34:99:0,99,1195 0/0:26,0:26:72.22:0,72,887 0/0:26,0:26:75.23:0,75,936 0/0:29,0:29:81.26:0,81,1019 0/0:33,0:33:96.29:0,96,1189 10 5929962 . G C 547.32 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.845;DP=4676;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.3258;InbreedingCoeff=-0.0120;MQ=59.43;MQ0=0;MQRankSum=0.925;QD=9.77;ReadPosRankSum=-1.936 GT:AD:DP:GQ:PL 0/0:77,0:77:99:0,187,2386 0/0:85,0:85:99:0,229,2827 0/0:61,0:61:99:0,159,2020 0/0:226,0:226:99:0,563,7517 0/0:192,0:193:99:0,488,6541 0/0:177,1:178:99:0,451,6004 0/0:154,0:154:99:0,397,5287 0/0:150,0:150:99:0,382,5051 0/0:77,0:77:99:0,205,2562 0/0:79,0:79:99:0,208,2641 0/0:68,0:68:99:0,181,2220 0/0:87,0:87:99:0,223,2780 0/0:60,0:60:99:0,153,1964 0/0:80,0:80:99:0,220,2736 0/0:249,0:250:99:0,653,8149 0/0:63,0:63:99:0,175,2166 0/0:73,0:73:99:0,196,2441 0/0:72,0:72:99:0,199,2491 0/0:151,0:151:99:0,370,4648 0/0:165,0:165:99:0,424,5352 0/0:147,0:148:99:0,391,4819 0/0:108,0:109:99:0,265,3404 0/0:235,0:236:99:0,593,7942 0/0:131,0:131:99:0,334,4480 0/0:180,0:180:99:0,463,6164 0/0:145,0:145:99:0,367,4956 0/0:59,0:59:99:0,153,1957 0/0:84,0:84:99:0,208,2619 0/0:82,0:82:99:0,214,2694 0/0:76,0:76:99:0,193,2444 0/1:33,23:56:99:594,0,988 0/0:165,0:165:99:0,409,5286 0/0:95,0:95:99:0,241,3020 0/0:81,0:81:99:0,226,2823 0/0:61,0:61:99:0,141,1797 0/0:75,0:75:99:0,193,2461 0/0:147,0:147:99:0,373,4605 0/0:88,0:89:99:0,232,2891 0/0:89,0:89:99:0,244,2999 0/0:75,0:75:99:0,205,2568 0/0:63,0:64:99:0,178,2256 0/0:79,1:80:99:0,217,2701 10 5966335 . C CT 16.50 . AC=4;AF=0.048;AN=84;BaseQRankSum=-0.196;DP=2362;FS=397.559;HRun=2;HaplotypeScore=141.0822;InbreedingCoeff=-0.0620;MQ=58.37;MQ0=0;MQRankSum=0.465;QD=0.06;ReadPosRankSum=-9.002 GT:AD:DP:GQ:PL 0/0:49,0:49:69.20:0,69,841 0/0:66,0:66:99:0,99,1202 0/0:30,0:30:51.15:0,51,633 0/0:102,0:102:99:0,163,2198 0/0:92,0:92:99:0,120,1573 0/0:72,0:72:92.53:0,93,1430 0/0:72,0:70:99:0,126,1542 0/0:103,0:102:99:0,143,1920 0/0:56,0:56:45.47:0,45,1097 0/1:43,0:43:16.57:17,0,641 0/0:37,0:37:60.17:0,60,724 0/0:44,0:44:32.25:0,32,660 0/0:25,0:25:39.12:0,39,482 0/1:32,8:40:10.54:11,0,839 0/1:128,0:128:42.71:43,0,1653 0/0:47,0:47:37.69:0,38,783 0/0:35,0:35:0.44:10,0,392 0/0:47,0:47:23.86:0,24,736 0/0:65,0:65:45.25:0,45,787 0/0:81,0:81:99:0,126,1562 0/0:53,0:53:23.43:0,23,841 0/0:50,0:49:75.21:0,75,906 0/0:99,0:99:99:0,159,1959 0/0:65,0:64:91.17:0,91,1140 0/0:78,0:76:85.95:0,86,1414 0/0:63,0:63:88.28:0,88,1284 0/0:31,0:31:17.22:0,17,493 0/0:45,0:45:24.81:0,25,585 0/0:31,0:31:38.89:0,39,447 0/0:39,0:39:31.34:0,31,659 0/0:39,0:39:19.36:0,19,552 0/0:77,0:77:99:0,117,1423 0/0:38,0:38:18.05:0,18,487 0/0:46,0:46:84.26:0,84,1038 0/0:53,0:53:60.33:0,60,1014 0/0:49,0:49:26.48:0,26,908 0/1:60,0:60:35.26:35,0,911 0/0:46,0:46:43.65:0,44,807 0/0:36,0:36:36.23:0,36,677 0/0:37,0:37:13.60:0,14,682 0/0:46,0:46:72.20:0,72,868 0/0:47,0:47:55.33:0,55,948 10 5966338 . C T 70.78 . AC=4;AF=0.048;AN=84;BaseQRankSum=-9.807;DP=2123;Dels=0.00;FS=319.350;HRun=2;HaplotypeScore=1.3136;InbreedingCoeff=-0.0575;MQ=58.59;MQ0=0;MQRankSum=1.289;QD=0.31;ReadPosRankSum=-9.279 GT:AD:DP:GQ:PL 0/0:31,15:46:75.22:0,75,905 0/0:38,20:58:90.25:0,90,1091 0/0:19,8:27:51.14:0,51,609 0/0:70,26:96:99:0,149,2150 0/0:56,31:87:99:0,123,1814 0/0:52,10:62:99:0,116,1504 0/0:55,14:69:99:0,129,1657 0/0:64,29:93:99:0,132,1870 0/0:35,11:46:39.37:0,39,1116 0/1:24,16:40:41.28:41,0,533 0/0:25,9:34:60.16:0,60,717 0/0:25,10:35:30.68:0,31,704 0/0:18,7:25:48.14:0,48,584 0/0:30,2:32:78.21:0,78,940 0/1:62,50:113:64.54:65,0,1548 0/0:30,13:43:40.31:0,40,715 0/1:19,11:30:16.01:16,0,432 0/0:29,16:45:4.21:0,4,733 0/0:33,21:54:43.53:0,44,815 0/0:56,17:73:99:0,126,1546 0/0:31,13:44:11.27:0,11,751 0/0:28,17:45:75.21:0,75,885 0/0:70,24:94:99:0,162,2099 0/0:33,22:55:76.61:0,77,1220 0/0:53,18:71:90.01:0,90,1611 0/0:42,15:57:82.72:0,83,1404 0/0:20,9:29:27.68:0,28,658 0/0:25,18:43:35.47:0,35,675 0/0:21,5:26:13.57:0,14,457 0/0:24,8:32:23.69:0,24,559 0/0:24,10:34:18.03:0,18,584 0/0:53,19:72:99:0,120,1413 0/0:23,12:35:11.70:0,12,482 0/0:36,7:44:87.23:0,87,1035 0/0:39,7:46:58.72:0,59,1040 0/0:34,11:45:32.42:0,32,1034 0/1:33,15:48:34.17:34,0,932 0/0:24,18:43:24.93:0,25,665 0/0:24,6:30:28.60:0,29,628 0/0:26,11:37:8.95:0,9,684 0/0:31,9:41:72.21:0,72,869 0/0:31,13:44:50.73:0,51,821 10 5979117 . T C 214.14 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.904;DP=1332;Dels=0.00;FS=2.605;HRun=0;HaplotypeScore=0.7403;InbreedingCoeff=-0.0121;MQ=58.65;MQ0=0;MQRankSum=-1.155;QD=8.57;ReadPosRankSum=-0.214 GT:AD:DP:GQ:PL 0/0:26,0:26:66.20:0,66,798 0/0:28,0:28:75.23:0,75,898 0/0:17,0:17:42.12:0,42,497 0/0:82,0:82:99:0,214,2600 0/0:66,0:66:99:0,178,2171 0/0:37,0:37:99:0,102,1235 0/0:37,0:37:96.30:0,96,1196 0/0:29,0:29:78.24:0,78,956 0/0:22,0:22:63.14:0,63,716 0/0:23,0:23:63.19:0,63,757 0/0:16,0:16:48.08:0,48,531 0/0:17,0:17:48.14:0,48,562 0/0:16,0:16:48.12:0,48,548 0/0:20,0:20:57.18:0,57,703 0/0:88,0:89:99:0,250,2902 0/0:26,0:27:78.20:0,78,892 0/0:19,0:19:54.15:0,54,633 0/0:22,0:22:60.18:0,60,731 0/0:30,0:30:87.26:0,87,1038 0/0:51,0:51:99:0,141,1668 0/0:28,0:28:75.20:0,75,878 0/0:28,0:28:72.21:0,72,873 0/0:75,0:75:99:0,184,2236 0/0:31,0:31:84.24:0,84,1020 0/0:43,0:43:99:0,117,1398 0/0:37,0:37:99:0,102,1259 0/0:18,0:18:42.12:0,42,500 0/0:25,0:25:66.20:0,66,800 0/0:17,0:17:45.14:0,45,565 0/0:25,0:25:75.23:0,75,889 0/1:14,11:25:99:260,0,389 0/0:45,0:45:99:0,126,1517 0/0:22,0:22:57.17:0,57,700 0/0:21,0:21:63.16:0,63,712 0/0:29,2:31:42.49:0,42,954 0/0:25,0:25:69.21:0,69,819 0/0:36,0:36:99:0,99,1159 0/0:22,0:22:66.20:0,66,782 0/0:34,0:34:96.28:0,96,1149 0/0:29,0:29:81.22:0,81,936 0/0:21,0:21:54.14:0,54,645 0/0:20,0:20:54.14:0,54,638 10 6001696 . C T 15289.12 . AC=39;AF=0.464;AN=84;BaseQRankSum=9.200;DP=1417;Dels=0.00;FS=17.519;HRun=0;HaplotypeScore=0.7902;InbreedingCoeff=-0.1051;MQ=59.04;MQ0=0;MQRankSum=-0.435;QD=15.68;ReadPosRankSum=-1.366 GT:AD:DP:GQ:PL 0/1:16,16:32:99:454,0,351 0/1:16,16:32:99:494,0,455 0/1:19,12:31:99:323,0,477 0/1:43,17:60:99:424,0,1242 0/1:27,14:41:99:403,0,787 1/1:0,22:22:54.17:706,54,0 1/1:0,12:12:30.09:392,30,0 1/1:0,32:32:90.29:1165,90,0 0/0:33,0:33:96.27:0,96,1160 0/1:15,8:23:99:235,0,434 0/0:35,0:35:84.25:0,84,1024 1/1:0,22:22:63.20:794,63,0 1/1:1,15:16:10.58:473,11,0 0/1:14,15:29:99:454,0,341 0/1:43,36:79:99:925,0,1170 0/1:14,7:21:99:148,0,405 0/1:23,11:34:99:316,0,606 0/1:16,7:23:99:196,0,422 0/1:38,16:54:99:462,0,964 1/1:0,41:41:99:1355,105,0 0/1:33,20:53:99:557,0,830 0/0:43,0:43:99:0,105,1246 0/0:55,0:55:99:0,147,1888 0/1:14,8:22:99:254,0,434 0/1:15,15:30:99:461,0,404 0/1:16,9:25:99:271,0,421 1/1:0,22:22:63.20:787,63,0 0/1:12,16:28:99:487,0,306 1/1:0,11:11:33.10:405,33,0 0/0:33,0:33:87.19:0,87,994 0/1:14,12:26:99:371,0,420 0/1:18,19:37:99:562,0,417 0/0:40,0:40:99:0,111,1325 0/0:31,0:31:84.21:0,84,991 0/1:11,11:22:99:327,0,263 0/0:35,0:35:99:0,102,1239 0/0:60,0:61:99:0,165,1965 0/0:43,1:44:99:0,126,1472 0/1:21,20:41:99:559,0,487 0/1:17,11:28:99:308,0,438 0/1:18,8:26:99:222,0,557 0/0:31,0:32:84.25:0,84,1020 10 6264876 . A G 38.16 . AC=5;AF=0.060;AN=84;BaseQRankSum=-13.333;DP=915;Dels=0.00;FS=297.012;HRun=2;HaplotypeScore=0.8675;InbreedingCoeff=-0.0931;MQ=58.28;MQ0=0;MQRankSum=3.519;QD=0.34;ReadPosRankSum=-10.379 GT:AD:DP:GQ:PL 0/0:9,3:12:1.60:4,0,246 0/0:19,6:25:11.79:0,12,612 0/0:8,3:11:21.06:0,21,251 0/0:20,9:29:25.83:0,26,461 0/0:16,4:20:11.45:0,11,423 0/0:16,3:19:45.12:0,45,568 0/0:17,6:23:51.16:0,51,650 0/0:23,4:28:36.57:0,37,725 0/0:21,3:24:25.81:0,26,641 0/0:18,6:24:19.60:0,20,558 0/0:12,5:17:33.10:0,33,405 0/0:7,4:11:1.30:5,0,225 0/0:10,4:14:4.40:0,4,299 0/0:16,6:22:45.14:0,45,546 0/0:36,6:42:14.68:0,15,1098 0/0:19,5:24:28.52:0,29,614 0/0:16,9:25:25.27:0,25,504 0/0:17,3:21:48.15:0,48,606 0/1:19,13:32:31:31,0,434 0/0:28,7:35:55.72:0,56,664 0/0:21,8:29:56.85:0,57,650 0/0:17,7:24:19.48:0,19,498 0/0:28,8:36:75.24:0,75,943 0/1:11,6:17:25.09:25,0,308 0/0:13,5:18:36.11:0,36,459 0/0:14,7:21:15.42:0,15,426 0/0:14,3:17:12.50:0,13,458 0/0:8,4:12:21.04:0,21,247 0/0:16,3:19:8.44:0,8,375 0/0:17,3:20:51.16:0,51,630 0/0:10,5:15:26.82:0,27,313 0/0:32,9:41:58:0,58,1050 0/0:16,7:23:39.12:0,39,480 0/0:5,1:6:15.04:0,15,175 0/1:16,11:27:32.58:33,0,505 0/0:15,5:20:45.10:0,45,521 0/1:9,6:15:30.11:30,0,263 0/0:14,1:15:36.11:0,36,439 0/1:14,6:20:10.15:10,0,433 0/0:15,4:19:10.58:0,11,454 0/0:14,6:20:17.43:0,17,432 0/0:20,3:23:29.47:0,29,572 10 6527143 . G A 60132.93 . AC=27;AF=0.321;AN=84;BaseQRankSum=10.921;DP=5979;DS;Dels=0.00;FS=0.411;HRun=0;HaplotypeScore=6.1564;InbreedingCoeff=-0.1462;MQ=59.27;MQ0=1;MQRankSum=0.348;QD=16.57;ReadPosRankSum=3.502 GT:AD:DP:GQ:PL 0/1:55,62:117:99:1833,0,1485 0/1:49,55:104:99:1601,0,1349 0/1:49,53:102:99:1523,0,1367 0/1:97,109:206:99:3226,0,2803 0/1:125,104:229:99:3078,0,3950 0/1:114,108:223:99:3269,0,3390 1/1:0,229:229:99:8012,614,0 0/0:203,0:204:99:0,554,7109 0/1:58,55:113:99:1500,0,1624 0/0:91,0:91:99:0,247,2873 1/1:2,96:98:99:3286,209,0 0/0:112,0:112:99:0,298,3608 0/0:109,0:109:99:0,295,3545 0/1:56,51:107:99:1406,0,1597 0/1:112,109:221:99:3122,0,3138 0/1:50,40:90:99:1167,0,1362 0/0:115,0:115:99:0,307,3672 0/0:126,0:126:99:0,349,4136 0/0:210,0:211:99:0,539,6469 0/0:204,0:204:99:0,548,6676 0/1:106,98:204:99:2723,0,2841 0/0:110,0:110:99:0,301,3570 0/1:139,89:228:99:2579,0,4101 0/1:99,97:196:99:2975,0,2772 0/0:228,0:228:99:0,605,7870 0/1:110,96:206:99:2844,0,3128 0/0:93,0:93:99:0,256,3029 0/0:96,0:96:99:0,271,3219 0/0:96,0:96:99:0,262,3157 0/1:37,53:90:99:1537,0,1021 0/0:97,0:97:99:0,271,3224 0/1:111,81:192:99:2194,0,2830 0/1:50,67:117:99:2003,0,1309 0/1:58,49:107:99:1437,0,1629 0/1:41,67:108:99:1883,0,1044 0/1:49,47:97:99:1428,0,1355 0/1:74,80:154:99:2253,0,1866 0/0:111,0:111:99:0,304,3591 1/1:0,90:90:99:3254,262,0 0/0:121,0:121:99:0,325,3865 0/0:104,0:104:99:0,292,3453 0/0:122,0:122:99:0,337,4052 10 6540406 . G C 1393.03 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.825;DP=3931;DS;Dels=0.00;FS=6.038;HRun=0;HaplotypeScore=2.4326;InbreedingCoeff=-0.0120;MQ=59.37;MQ0=0;MQRankSum=-0.202;QD=13.79;ReadPosRankSum=0.602 GT:AD:DP:GQ:PL 0/0:82,0:82:99:0,220,2733 0/0:84,0:84:99:0,232,2839 0/0:75,0:75:99:0,205,2483 0/0:151,0:151:99:0,403,5287 0/0:121,0:121:99:0,319,4269 0/0:107,0:107:99:0,292,3856 0/0:103,0:103:99:0,265,3519 0/0:104,0:104:99:0,262,3481 0/0:79,0:79:99:0,226,2783 0/0:69,0:69:99:0,184,2256 0/0:76,0:76:99:0,208,2531 0/0:66,0:67:99:0,184,2264 0/0:70,0:70:99:0,199,2436 0/0:87,0:88:99:0,262,3174 0/0:226,0:226:99:0,617,7557 0/0:79,0:79:99:0,217,2634 0/0:86,0:86:99:0,253,3012 0/0:68,0:68:99:0,202,2431 0/0:120,1:122:99:0,331,4002 0/0:145,0:145:99:0,376,4775 0/0:120,0:120:99:0,325,3994 0/1:54,46:101:99:1439,0,1530 0/0:141,0:141:99:0,373,5018 0/0:81,0:81:99:0,223,2968 0/0:113,0:113:99:0,298,4002 0/0:70,0:70:99:0,193,2555 0/0:48,0:48:99:0,138,1715 0/0:72,0:72:99:0,193,2366 0/0:71,0:71:99:0,199,2447 0/0:85,0:85:99:0,244,3009 0/0:59,0:59:99:0,162,2008 0/0:139,0:140:99:0,358,4539 0/0:66,0:66:99:0,181,2198 0/0:78,0:78:99:0,211,2564 0/0:88,0:88:99:0,247,2957 0/0:81,0:81:99:0,226,2793 0/0:118,0:118:99:0,322,3905 0/0:86,0:86:99:0,241,2959 0/0:81,0:81:99:0,232,2797 0/0:72,0:72:99:0,205,2535 0/0:84,0:84:99:0,232,2872 0/0:74,0:74:99:0,211,2571 10 6557064 . AGTTGGAC A 743.36 . AC=5;AF=0.060;AN=84;BaseQRankSum=-0.468;DP=1525;DS;FS=285.101;HRun=0;HaplotypeScore=221.7919;InbreedingCoeff=-0.0954;MQ=57.46;MQ0=0;MQRankSum=-0.980;QD=3.26;ReadPosRankSum=-16.563 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,111,4373 0/0:38,0:38:74.32:0,74,3731 0/0:24,0:23:60.20:0,60,2351 0/0:56,0:56:30.59:0,31,4124 0/0:34,0:34:1.52:4,0,2474 0/0:30,0:29:56.25:0,56,2589 0/0:31,0:26:69.22:0,69,2625 0/0:34,0:32:71.10:0,71,2947 0/0:28,0:28:13.27:0,13,2308 0/0:38,0:38:59.34:0,59,3226 0/1:27,13:40:99:230,0,2396 0/0:35,0:35:81.27:0,81,3103 0/0:15,0:15:27.07:0,27,973 0/0:28,0:28:54.23:0,54,2500 0/0:85,0:85:0.39:0,0,6298 0/0:28,0:28:39.14:0,39,2039 0/0:30,0:30:71.98:0,72,2697 0/0:22,0:22:1.27:0,1,1836 0/0:36,0:36:59.28:0,59,2867 0/0:65,0:65:99:0,144,6148 0/1:44,12:56:99:260,0,3441 0/0:42,0:42:48.39:0,48,3628 0/1:41,0:41:42.78:43,0,2932 0/0:32,0:31:21.26:0,21,2342 0/0:38,0:37:24.27:0,24,2939 0/0:30,0:28:21.49:0,21,1919 0/0:23,0:23:36.03:0,36,1657 0/1:29,28:57:99:285,0,2698 0/0:22,0:22:40.12:0,40,1691 0/0:30,0:30:55.06:0,55,2476 0/0:28,0:28:44.15:0,44,2609 0/0:68,0:68:99:0,172,6733 0/0:33,0:33:59.27:0,59,3096 0/0:32,0:32:57.90:0,58,2679 0/0:29,0:29:28.27:0,28,2501 0/0:35,0:35:9.54:0,10,2664 0/0:36,0:36:58.08:0,58,3202 0/0:29,0:29:2.68:1,0,1551 0/0:22,0:22:37.95:0,38,1822 0/0:35,0:35:64.21:0,64,2996 0/0:32,0:32:27.25:0,27,2774 0/1:34,0:34:28.73:29,0,2347 10 6557069 . G A 80.59 . AC=4;AF=0.048;AN=84;BaseQRankSum=-5.657;DP=1886;Dels=0.03;FS=100.348;HRun=1;HaplotypeScore=11.0667;InbreedingCoeff=-0.0608;MQ=57.97;MQ0=0;MQRankSum=-1.820;QD=0.43;ReadPosRankSum=-6.612 GT:AD:DP:GQ:PL 0/0:41,1:42:99:0,99,1214 0/0:39,1:40:78.19:0,78,923 0/0:32,1:33:60.18:0,60,742 0/0:46,25:72:84.20:0,84,1046 0/0:31,19:50:54.16:0,54,674 0/0:32,6:38:57.12:0,57,655 0/0:30,9:39:32.46:0,32,649 0/0:36,10:46:66.15:0,66,758 0/0:26,12:38:2.12:2,0,576 0/1:37,10:47:42.48:42,0,789 0/0:27,1:28:57.17:0,57,692 0/0:34,11:45:66.19:0,66,805 0/0:19,3:22:24.06:0,24,266 0/0:29,8:37:33.68:0,34,719 0/0:75,35:112:66.93:0,67,1785 0/0:31,2:36:54.16:0,54,650 0/0:30,13:43:24.88:0,25,612 0/0:24,14:38:48.14:0,48,591 0/0:32,17:51:7.71:0,8,773 0/0:58,12:71:75.27:0,75,1492 0/0:36,3:39:78.20:0,78,904 0/0:39,2:41:78.21:0,78,931 0/0:41,2:43:69.20:0,69,830 0/0:29,7:36:48.14:0,48,605 0/0:36,8:44:66.17:0,66,824 0/0:30,17:47:45.12:0,45,540 0/0:19,2:21:30.09:0,30,360 0/0:30,0:30:54.14:0,54,651 0/0:21,8:29:12.61:0,13,478 0/0:36,9:45:66.16:0,66,789 0/0:28,5:33:60.17:0,60,725 0/0:69,9:79:99:0,113,1665 0/0:40,6:46:78.19:0,78,886 0/0:35,4:40:57.14:0,57,676 0/1:32,18:50:22.32:22,0,639 0/0:34,10:44:39.49:0,39,731 0/0:34,5:39:78.22:0,78,942 0/0:24,11:37:39.09:0,39,445 0/0:29,1:30:45.12:0,45,538 0/1:36,12:48:26.35:26,0,668 0/0:35,7:43:66.16:0,66,783 0/1:27,14:41:75.06:75,0,545 10 6557069 . G GA 21.82 . AC=2;AF=0.024;AN=84;BaseQRankSum=10.380;DP=2012;FS=147.223;HRun=1;HaplotypeScore=228.4616;InbreedingCoeff=-0.0557;MQ=58.44;MQ0=0;MQRankSum=0.779;QD=0.25;ReadPosRankSum=-10.939 GT:AD:DP:GQ:PL 0/0:43,5:48:96:0,96,1223 0/0:39,12:51:76.91:0,77,1004 0/0:31,7:37:62.01:0,62,767 0/0:74,0:74:77.57:0,78,1022 0/0:52,0:52:55.44:0,55,729 0/0:37,0:36:56.63:0,57,678 0/0:39,0:35:62.39:0,62,757 0/0:45,0:43:71.49:0,71,863 0/0:40,0:40:9.68:0,10,627 0/1:46,0:46:35.67:36,0,642 0/0:40,1:41:37.63:0,38,732 0/0:45,0:45:70.64:0,71,872 0/0:24,5:29:23.17:0,23,277 0/0:39,0:39:41.04:0,41,777 0/0:111,0:111:58.49:0,58,1610 0/0:34,7:41:30.94:0,31,686 0/0:43,0:43:31.72:0,32,682 0/0:40,0:40:50.86:0,51,638 0/0:56,0:56:2.82:0,0,647 0/0:71,0:71:98.04:0,98,1728 0/0:50,1:51:50.97:0,51,1005 0/0:40,10:50:83.49:0,83,1043 0/0:43,9:52:29.70:0,30,650 0/0:40,0:39:52.71:0,53,655 0/0:45,0:45:67.92:0,68,823 0/0:47,0:45:39.62:0,40,468 0/0:23,8:31:31.85:0,32,426 0/0:58,0:58:0.40:10,0,724 0/0:28,1:29:16.67:0,17,486 0/0:46,0:46:65.11:0,65,822 0/0:34,0:34:51.59:0,52,731 0/0:78,0:78:99:0,133,1990 0/0:46,0:46:71.22:0,71,890 0/0:35,13:48:5.04:0,5,685 0/0:53,1:54:12.34:0,12,731 0/0:46,0:46:13.82:0,14,707 0/0:42,13:55:44.68:0,45,901 0/0:39,0:39:34.40:0,34,435 0/0:27,10:37:22.27:0,22,532 0/0:51,0:51:2.72:1,0,804 0/0:46,0:46:65.31:0,65,839 0/1:42,0:42:55.05:55,0,598 10 6557071 . C A 9100.29 . AC=39;AF=0.464;AN=84;BaseQRankSum=-19.736;DP=2765;Dels=0.02;FS=1216.313;HRun=2;HaplotypeScore=11.0857;InbreedingCoeff=-0.8589;MQ=58.67;MQ0=0;MQRankSum=2.273;QD=3.59;ReadPosRankSum=-20.138 GT:AD:DP:GQ:PL 0/1:35,24:59:58.25:58,0,1034 0/1:31,31:62:99:208,0,667 0/1:26,30:56:99:143,0,575 0/1:32,69:101:99:475,0,818 0/1:23,54:77:99:428,0,510 0/1:26,35:61:57.01:57,0,504 0/1:28,32:60:85.28:85,0,595 0/1:30,46:76:9.57:10,0,700 0/1:26,39:65:99:238,0,503 0/1:24,37:61:99:252,0,521 0/0:25,17:42:32.47:0,32,614 0/1:31,27:58:99:137,0,666 0/1:13,29:42:99:140,0,167 0/1:26,33:59:99:147,0,661 0/1:67,102:171:99:904,0,1307 0/1:24,31:55:99:110,0,585 0/1:23,37:60:99:229,0,443 0/1:22,29:51:99:339,0,516 0/1:28,50:78:99:453,0,563 0/1:57,49:106:52.46:52,0,1300 0/0:30,29:60:13.24:0,13,778 0/1:30,41:72:99:152,0,733 0/1:29,41:70:99:230,0,620 0/1:25,33:58:99:237,0,508 0/1:26,33:59:99:229,0,701 0/1:19,45:64:99:371,0,355 0/1:14,26:40:99:218,0,299 0/1:25,7:32:6.78:7,0,667 0/1:16,27:43:42.35:42,0,413 0/1:30,26:56:99:173,0,654 0/1:21,22:43:99:180,0,568 0/0:61,43:104:13.92:0,14,1431 0/1:31,35:66:99:166,0,590 0/1:29,40:69:99:250,0,534 0/1:27,38:65:99:426,0,500 0/1:26,34:60:99:324,0,656 0/1:30,44:74:99:410,0,721 0/1:20,31:51:99:270,0,296 0/1:18,32:50:99:219,0,361 0/1:27,33:60:99:288,0,574 0/1:25,35:60:99:129,0,564 0/1:21,35:56:99:314,0,480 10 7285632 . A G 91541.11 . AC=79;AF=0.940;AN=84;BaseQRankSum=7.217;DP=2864;DS;Dels=0.00;FS=6.173;HRun=0;HaplotypeScore=0.8185;InbreedingCoeff=-0.0633;MQ=59.35;MQ0=0;MQRankSum=0.838;QD=31.96;ReadPosRankSum=1.333 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1625,135,0 1/1:0,51:51:99:1749,144,0 1/1:1,49:50:99:1635,101,0 1/1:0,81:81:99:2890,223,0 1/1:0,83:83:99:2927,217,0 1/1:0,69:69:99:2630,199,0 1/1:0,57:57:99:2059,156,0 1/1:0,70:70:99:2545,196,0 1/1:1,70:71:99:2334,166,0 1/1:0,55:55:99:1875,156,0 1/1:0,46:46:99:1621,132,0 0/1:22,32:55:99:910,0,611 1/1:0,53:53:99:1752,147,0 0/1:33,25:58:99:714,0,973 1/1:0,166:166:99:5380,445,0 1/1:0,46:46:99:1570,132,0 0/1:30,32:62:99:858,0,875 1/1:0,63:63:99:2193,184,0 1/1:1,103:105:99:3392,248,0 1/1:0,107:107:99:3509,292,0 1/1:0,93:94:99:3194,259,0 1/1:0,61:62:99:2033,166,0 1/1:0,79:79:99:2881,223,0 1/1:0,52:52:99:2047,157,0 1/1:0,72:74:99:2524,193,0 1/1:0,58:58:99:1885,141,0 0/1:34,24:58:99:667,0,965 1/1:0,60:60:99:2061,175,0 0/1:27,23:50:99:634,0,795 1/1:0,70:70:99:2325,193,0 1/1:0,52:53:99:1807,147,0 1/1:0,93:93:99:3146,259,0 1/1:0,71:71:99:2242,187,0 1/1:0,66:66:99:2286,190,0 1/1:0,47:47:99:1567,126,0 1/1:0,71:71:99:2441,205,0 1/1:1,82:83:99:2561,214,0 1/1:0,71:71:99:2424,205,0 1/1:0,54:54:99:1877,153,0 1/1:0,67:67:99:2259,187,0 1/1:0,72:72:99:2369,196,0 1/1:0,61:61:99:2139,178,0 10 7679393 . C T 29700.02 . AC=28;AF=0.333;AN=84;BaseQRankSum=-5.942;DP=2889;Dels=0.00;FS=4.247;HRun=2;HaplotypeScore=1.4502;InbreedingCoeff=0.1429;MQ=58.57;MQ0=0;MQRankSum=0.293;QD=20.63;ReadPosRankSum=0.773 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2161,172,0 0/1:24,14:38:99:364,0,727 0/0:62,0:62:99:0,178,2252 1/1:0,114:116:99:3855,295,0 1/1:0,101:101:99:3468,268,0 0/0:97,0:97:99:0,250,3331 0/0:82,0:83:99:0,211,2837 0/1:50,28:78:99:641,0,1581 0/1:17,28:45:99:858,0,496 0/1:31,11:42:99:266,0,894 0/0:58,0:58:99:0,147,1868 0/0:53,0:53:99:0,138,1762 0/0:50,0:50:99:0,141,1783 0/0:50,0:50:99:0,144,1804 0/0:207,0:207:99:0,542,6919 0/0:47,0:47:99:0,129,1656 0/0:67,0:67:99:0,187,2382 0/0:49,0:49:99:0,123,1587 0/0:80,0:80:99:0,202,2578 0/0:84,1:85:99:0,191,2849 0/0:95,0:95:99:0,262,3344 0/0:64,0:64:99:0,175,2211 1/1:0,146:146:99:4853,370,0 0/1:36,46:82:99:1354,0,1099 0/1:46,41:87:99:1160,0,1427 0/1:37,39:76:99:1090,0,1028 0/1:14,27:41:99:836,0,388 0/0:56,0:56:99:0,153,1923 0/1:22,17:39:99:463,0,698 0/1:26,24:50:99:672,0,759 0/1:36,23:59:99:620,0,1135 0/0:83,0:83:99:0,226,2858 0/0:51,0:51:99:0,144,1800 0/0:55,0:55:99:0,147,1861 0/1:23,22:45:99:635,0,682 0/0:57,0:57:99:0,157,2011 1/1:0,64:64:99:2071,169,0 0/1:33,23:56:99:656,0,1031 0/1:46,19:65:99:509,0,1390 1/1:0,50:50:99:1815,147,0 0/1:19,28:47:99:774,0,528 0/1:30,21:51:99:580,0,941 10 7749183 . C T 6321.87 . AC=7;AF=0.083;AN=84;BaseQRankSum=3.165;DP=4017;DS;Dels=0.00;FS=2.392;HRun=1;HaplotypeScore=0.9177;InbreedingCoeff=-0.0909;MQ=59.50;MQ0=0;MQRankSum=1.035;QD=12.80;ReadPosRankSum=-2.104 GT:AD:DP:GQ:PL 0/0:88,0:88:99:0,232,2780 0/0:97,0:97:99:0,268,3099 0/0:76,0:76:99:0,190,2275 0/0:144,0:144:99:0,346,4423 0/0:124,0:124:99:0,316,4068 0/0:139,0:139:99:0,364,4696 0/0:133,0:133:99:0,346,4471 0/0:117,0:117:99:0,289,3772 0/0:77,0:77:99:0,199,2367 0/1:42,31:73:99:856,0,1146 0/0:72,0:72:99:0,205,2429 0/0:81,0:81:99:0,205,2477 0/0:84,0:84:99:0,217,2544 0/0:79,0:80:99:0,214,2509 0/0:233,0:234:99:0,599,7125 0/0:55,0:55:99:0,144,1714 0/0:76,0:76:99:0,202,2389 0/0:78,0:78:99:0,211,2449 0/0:136,0:136:99:0,340,4039 0/0:119,0:119:99:0,298,3645 0/0:149,0:149:99:0,358,4399 0/0:74,0:74:99:0,178,2179 0/0:149,0:149:99:0,364,4773 0/0:102,0:102:99:0,259,3342 0/0:133,0:133:99:0,325,4232 0/0:122,0:122:99:0,298,3876 0/0:54,0:54:99:0,144,1738 0/0:76,0:76:99:0,199,2323 0/0:82,0:82:99:0,217,2573 0/0:83,0:83:99:0,214,2539 0/0:57,0:57:99:0,165,1901 0/0:102,0:102:99:0,265,3138 0/1:42,38:80:99:972,0,1100 0/1:24,36:60:99:1097,0,615 0/0:78,0:78:99:0,211,2502 0/1:43,38:81:99:952,0,1204 0/0:105,0:106:99:0,265,3129 0/0:70,0:70:99:0,199,2296 0/0:76,0:76:99:0,208,2421 0/1:32,37:69:99:1064,0,829 0/1:47,24:71:99:587,0,1304 0/1:32,28:60:99:794,0,924 10 7771958 . C T 1064.82 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.941;DP=2916;Dels=0.00;FS=4.050;HRun=0;HaplotypeScore=1.0062;InbreedingCoeff=-0.0244;MQ=59.50;MQ0=0;MQRankSum=0.479;QD=9.51;ReadPosRankSum=-1.274 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,144,1763 0/0:59,0:59:99:0,172,2096 0/0:73,0:73:99:0,208,2595 0/0:101,0:101:99:0,295,3877 0/0:109,0:109:99:0,310,4173 0/0:108,0:108:99:0,298,3995 0/0:97,0:97:99:0,265,3575 0/0:85,0:85:99:0,238,3135 0/0:53,0:53:99:0,141,1784 0/0:53,0:53:99:0,150,1842 0/0:56,0:56:99:0,153,1926 0/0:68,0:68:99:0,193,2389 0/0:62,0:62:99:0,178,2160 0/0:61,0:61:99:0,169,2086 0/0:199,0:199:99:0,524,6556 0/0:51,0:51:99:0,144,1791 0/0:59,0:59:99:0,172,2110 0/0:65,0:65:99:0,175,2206 0/0:72,0:72:99:0,202,2487 0/0:57,0:57:99:0,150,1925 0/0:74,0:74:99:0,205,2527 0/0:41,0:41:99:0,123,1509 0/0:101,0:101:99:0,277,3691 0/0:91,0:91:99:0,244,3215 0/0:90,0:90:99:0,247,3278 0/0:81,0:81:99:0,220,2921 0/0:33,0:33:96.30:0,96,1198 0/0:75,0:75:99:0,214,2615 0/0:56,0:56:99:0,156,1934 0/0:46,0:46:99:0,129,1596 0/0:57,0:57:99:0,165,2018 0/0:64,0:64:99:0,178,2217 0/0:48,0:49:99:0,135,1665 0/0:65,0:65:99:0,187,2249 0/0:62,0:62:99:0,172,2142 0/0:65,0:65:99:0,178,2214 0/1:30,25:55:99:671,0,875 0/0:62,0:62:99:0,175,2146 0/1:39,18:57:99:456,0,1186 0/0:57,0:57:99:0,163,2010 0/0:41,0:41:99:0,117,1432 0/0:56,0:56:99:0,169,2039 10 7772035 . A G 3225.28 . 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T C 352.30 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.608;DP=1184;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3918;InbreedingCoeff=-0.0245;MQ=59.20;MQ0=0;MQRankSum=0.042;QD=8.01;ReadPosRankSum=0.085 GT:AD:DP:GQ:PL 0/1:9,10:19:99:272,0,277 0/1:17,8:25:99:142,0,508 0/0:29,0:29:69.22:0,69,879 0/0:34,0:34:84.26:0,84,1051 0/0:31,0:31:75.24:0,75,962 0/0:32,0:32:93.29:0,93,1164 0/0:42,0:42:99:0,102,1304 0/0:33,0:33:84.26:0,84,1061 0/0:19,0:19:51.16:0,51,621 0/0:25,0:25:66.20:0,66,817 0/0:22,0:22:60.18:0,60,732 0/0:29,0:29:75.24:0,75,944 0/0:37,0:37:93.28:0,93,1150 0/0:16,0:16:42.13:0,42,511 0/0:77,0:77:99:0,193,2379 0/0:7,0:7:21.06:0,21,251 0/0:19,0:19:54.17:0,54,651 0/0:14,0:14:39.12:0,39,472 0/0:48,0:48:99:0,132,1599 0/0:50,0:50:99:0,126,1579 0/0:39,0:39:99:0,99,1221 0/0:25,0:25:63.20:0,63,781 0/0:39,0:39:96.30:0,96,1233 0/0:30,0:30:75.24:0,75,964 0/0:28,0:28:66.21:0,66,861 0/0:26,0:26:63.19:0,63,799 0/0:22,0:22:54.17:0,54,690 0/0:15,0:15:42.13:0,42,509 0/0:17,0:18:45.13:0,45,546 0/0:31,0:31:75.24:0,75,962 0/0:15,0:15:45.14:0,45,544 0/0:51,0:51:99:0,129,1634 0/0:28,0:28:78.24:0,78,945 0/0:18,0:18:54.17:0,54,651 0/0:19,0:19:54.16:0,54,652 0/0:17,0:17:51.16:0,51,613 0/0:39,0:39:99:0,105,1296 0/0:25,0:25:69.21:0,69,840 0/0:24,0:24:69.21:0,69,820 0/0:27,0:27:66.21:0,66,838 0/0:18,0:18:54.16:0,54,642 0/0:22,0:22:57.18:0,57,703 10 11560541 . A C 33.80 . AC=1;AF=0.012;AN=84;BaseQRankSum=-25.738;DP=5050;DS;Dels=0.00;FS=177.057;HRun=2;HaplotypeScore=3.3406;InbreedingCoeff=-0.0120;MQ=59.37;MQ0=0;MQRankSum=-2.170;QD=0.19;ReadPosRankSum=-14.210 GT:AD:DP:GQ:PL 0/0:75,8:83:99:0,192,2217 0/0:90,11:101:99:0,217,2624 0/0:73,7:80:99:0,202,2372 0/0:151,13:165:99:0,361,4423 0/0:143,8:151:99:0,349,4316 0/0:144,4:149:99:0,325,4094 0/0:136,2:138:99:0,319,3911 0/0:115,3:118:99:0,280,3429 0/0:99,13:113:99:0,225,2963 0/0:76,9:86:99:0,193,2343 0/0:96,11:107:99:0,244,2893 0/0:68,5:73:99:0,161,2125 0/0:90,3:93:99:0,229,2729 0/0:95,12:107:99:0,121,2612 0/0:219,31:250:99:0,449,6183 0/0:59,3:62:99:0,144,1749 0/0:75,10:86:99:0,202,2423 0/0:107,9:116:99:0,274,3291 0/1:136,42:179:80.01:80,0,3700 0/0:197,13:210:99:0,463,5735 0/0:152,34:186:99:0,194,4296 0/0:100,3:103:99:0,238,2805 0/0:161,12:173:99:0,397,4933 0/0:104,5:109:99:0,259,3130 0/0:138,9:147:99:0,310,3827 0/0:129,2:131:99:0,301,3728 0/0:78,11:89:99:0,170,2320 0/0:97,10:107:99:0,232,2996 0/0:82,7:89:99:0,202,2433 0/0:86,8:94:99:0,226,2834 0/0:79,8:87:99:0,187,2416 0/0:196,6:202:99:0,466,5629 0/0:125,10:135:99:0,298,3590 0/0:76,6:83:99:0,166,2385 0/0:78,3:81:99:0,159,2100 0/0:112,9:121:99:0,265,3196 0/0:148,46:196:99:0,222,4373 0/0:96,5:101:99:0,246,2881 0/0:73,7:80:99:0,163,2131 0/0:91,10:101:99:0,232,2753 0/0:71,11:82:99:0,163,2172 0/0:76,10:86:99:0,171,2265 10 11784633 . C T 136.03 . AC=10;AF=0.227;AN=44;BaseQRankSum=-0.061;DP=43;Dels=0.00;FS=5.905;HRun=0;HaplotypeScore=0.0394;InbreedingCoeff=0.0371;MQ=56.78;MQ0=0;MQRankSum=-0.644;QD=9.07;ReadPosRankSum=-0.552 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,33 ./. ./. 0/0:3,1:4:9.02:0,9,98 0/0:2,0:2:6.02:0,6,66 0/0:3,0:3:6.01:0,6,61 ./. 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,32 ./. ./. 1/1:0,1:1:3:25,3,0 0/0:1,0:1:3.01:0,3,32 ./. 0/1:2,1:3:27.10:27,0,60 ./. ./. ./. ./. 0/1:3,1:4:15.64:16,0,86 0/0:2,0:2:6.02:0,6,64 0/0:1,0:1:2.99:0,3,23 1/1:0,1:1:3.01:38,3,0 ./. ./. ./. 1/1:0,1:1:3.01:30,3,0 ./. ./. 0/1:1,2:3:25.33:63,0,25 ./. 0/0:3,0:3:9.02:0,9,97 0/0:2,0:2:6.02:0,6,69 ./. 0/0:1,0:1:3.01:0,3,30 0/0:4,0:4:12.03:0,12,131 0/1:1,1:2:24.58:27,0,25 0/0:1,0:1:3.01:0,3,32 ./. ./. ./. 0/0:1,0:1:3.01:0,3,32 10 11797436 . T C 45894.23 . AC=84;AF=1.000;AN=84;DP=1340;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.8293;InbreedingCoeff=-0.0000;MQ=56.91;MQ0=0;QD=34.25 GT:AD:DP:GQ:PL 1/1:0,22:22:63.15:755,63,0 1/1:0,24:24:72.22:882,72,0 1/1:0,24:24:63.19:786,63,0 1/1:0,50:51:99:1800,135,0 1/1:0,56:56:99:2018,150,0 1/1:0,39:39:99:1307,99,0 1/1:0,26:26:75.24:996,75,0 1/1:0,20:20:51.16:672,51,0 1/1:0,24:24:69.20:864,69,0 1/1:0,18:18:48.15:605,48,0 1/1:0,26:26:75.23:927,75,0 1/1:0,22:22:57.15:680,57,0 1/1:0,25:25:66.20:823,66,0 1/1:0,32:32:90.28:1123,90,0 1/1:0,101:104:99:3438,277,0 1/1:0,28:29:75.23:949,75,0 1/1:0,28:28:72.22:892,72,0 1/1:0,33:33:90.28:1132,90,0 1/1:0,40:40:99:1367,111,0 1/1:0,52:52:99:1683,138,0 1/1:0,44:44:99:1525,126,0 1/1:0,32:32:90.27:1121,90,0 1/1:0,42:42:99:1534,117,0 1/1:0,29:29:84.26:1099,84,0 1/1:0,42:42:99:1416,108,0 1/1:0,37:37:99:1287,99,0 1/1:0,19:19:54.17:681,54,0 1/1:0,28:28:84.26:1038,84,0 1/1:0,25:25:72.20:878,72,0 1/1:0,29:29:75.21:943,75,0 1/1:0,29:29:81.23:1002,81,0 1/1:0,39:39:99:1280,105,0 1/1:0,31:31:84.25:1052,84,0 1/1:0,17:17:51.16:641,51,0 1/1:0,26:26:63.20:800,63,0 1/1:0,29:29:75.23:938,75,0 1/1:0,36:36:96.27:1173,96,0 1/1:0,19:19:51.16:648,51,0 1/1:0,21:21:60.16:717,60,0 1/1:0,26:26:66.21:842,66,0 1/1:0,20:20:60.19:751,60,0 1/1:0,24:24:66.20:832,66,0 10 11797467 . G A 25439.35 . AC=84;AF=1.000;AN=84;DP=855;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7677;InbreedingCoeff=-0.0002;MQ=55.39;MQ0=0;QD=29.75 GT:AD:DP:GQ:PL 1/1:0,11:12:30.07:345,30,0 1/1:0,10:10:30.08:343,30,0 1/1:0,19:19:57.15:637,57,0 1/1:0,36:36:99:1155,99,0 1/1:0,34:34:84.22:971,84,0 1/1:0,23:23:63.16:721,63,0 1/1:0,22:22:54.12:613,54,0 1/1:0,9:9:27.08:309,27,0 1/1:0,16:16:45.09:487,45,0 1/1:0,15:15:36.10:402,36,0 1/1:0,19:19:57.13:631,57,0 1/1:0,17:17:51.10:550,51,0 1/1:0,11:12:33.09:377,33,0 1/1:0,12:12:30.09:354,30,0 1/1:0,65:65:99:1680,147,0 1/1:1,16:18:45.12:506,45,0 1/1:0,16:16:45.12:516,45,0 1/1:0,23:23:63.18:722,63,0 1/1:0,23:25:60.14:675,60,0 1/1:0,34:34:93.24:1054,93,0 1/1:0,22:23:51.14:597,51,0 1/1:0,22:22:63.13:685,63,0 1/1:0,29:29:75.20:852,75,0 1/1:0,18:18:45.12:505,45,0 1/1:0,22:22:60.17:681,60,0 1/1:0,25:25:60.15:709,60,0 1/1:0,15:16:45.12:505,45,0 1/1:0,15:15:36.08:402,36,0 1/1:0,20:20:57.16:659,57,0 1/1:0,22:22:54.15:641,54,0 1/1:0,12:12:27.06:316,27,0 1/1:0,29:29:81.23:955,81,0 1/1:0,28:28:75.19:837,75,0 1/1:0,12:12:27.07:306,27,0 1/1:0,17:17:45.13:507,45,0 1/1:0,21:21:57.16:639,57,0 1/1:1,23:24:48.14:573,48,0 1/1:0,9:10:27.06:308,27,0 1/1:0,10:11:30.09:349,30,0 1/1:0,18:18:48.14:568,48,0 1/1:0,12:12:33.10:379,33,0 1/1:0,12:12:36.10:417,36,0 10 11797500 . G A 2507.11 . AC=7;AF=0.083;AN=84;BaseQRankSum=-0.019;DP=885;Dels=0.00;FS=3.944;HRun=1;HaplotypeScore=0.9006;InbreedingCoeff=-0.0911;MQ=56.69;MQ0=1;MQRankSum=1.429;QD=14.58;ReadPosRankSum=1.354 GT:AD:DP:GQ:PL 0/1:6,10:16:99:235,0,149 0/0:10,0:10:27.08:0,27,328 0/0:20,0:20:54.15:0,54,630 0/0:40,0:40:99:0,117,1412 0/1:15,22:37:99:645,0,415 0/0:31,0:31:90.26:0,90,1079 0/0:20,0:20:48.14:0,48,585 0/1:8,13:22:99:392,0,219 0/0:16,0:16:48.12:0,48,541 0/0:8,0:8:24.07:0,24,279 0/0:11,1:12:33.09:0,33,388 0/0:11,0:11:24.07:0,24,278 0/0:12,0:12:36.10:0,36,409 0/0:15,0:15:36.10:0,36,410 0/0:53,0:54:99:0,135,1598 0/0:21,0:21:60.18:0,60,715 0/0:13,0:14:36.09:0,36,416 0/0:21,0:21:54.15:0,54,625 0/0:28,0:28:78.19:0,78,897 0/0:40,0:40:99:0,102,1187 0/0:25,0:26:54.15:0,54,618 0/0:24,0:24:66.16:0,66,745 0/1:17,17:34:99:475,0,494 0/1:12,11:23:99:330,0,299 0/0:26,0:26:78.25:0,78,988 0/1:12,12:24:99:349,0,339 0/0:13,0:13:39.12:0,39,463 0/0:17,0:18:48.12:0,48,556 0/0:22,0:22:60.16:0,60,693 0/0:28,0:28:81.21:0,81,960 0/0:14,0:14:39.09:0,39,443 0/0:29,0:29:78.19:0,78,857 0/1:9,7:16:99:195,0,245 0/0:9,0:10:27.07:0,27,307 0/0:16,0:16:45.11:0,45,504 0/0:13,0:13:39.11:0,39,459 0/0:24,0:25:66.19:0,66,766 0/0:15,0:15:39.08:0,39,433 0/0:18,0:18:48.13:0,48,547 0/0:16,0:16:45.13:0,45,526 0/0:14,1:15:42.11:0,42,477 0/0:12,0:12:33.09:0,33,387 10 11997372 . A G 1475.04 . 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T G 2236.91 . 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G T 730.94 . 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T C 135628.74 . 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T C 35667.17 . 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T G 3348.18 . 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C A 1033.46 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.208;DP=2331;Dels=0.00;FS=2.272;HRun=1;HaplotypeScore=0.4851;InbreedingCoeff=-0.0244;MQ=59.46;MQ0=0;MQRankSum=0.330;QD=12.16;ReadPosRankSum=0.279 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,102,1250 0/0:41,0:41:99:0,111,1382 0/0:30,0:30:84.26:0,84,1055 0/0:84,0:84:99:0,196,2674 0/0:82,0:82:99:0,208,2838 0/0:111,0:111:99:0,286,3872 0/0:95,0:95:99:0,241,3300 0/0:84,0:84:99:0,214,2861 0/0:34,0:34:93.30:0,93,1183 0/0:39,0:39:99:0,105,1310 0/0:40,0:40:99:0,102,1319 0/0:51,0:51:99:0,132,1670 0/0:41,0:41:99:0,114,1440 0/0:33,0:33:87.28:0,87,1111 0/0:162,1:163:99:0,339,4817 0/0:15,0:15:39.12:0,39,494 0/0:44,0:44:99:0,114,1434 0/0:47,0:47:99:0,117,1499 0/0:43,0:43:99:0,108,1393 0/0:58,0:58:99:0,135,1741 0/0:55,0:55:99:0,141,1832 0/0:39,0:39:93.29:0,93,1204 0/0:106,0:106:99:0,247,3427 0/0:105,0:105:99:0,253,3463 0/0:102,0:102:99:0,253,3484 0/0:98,0:98:99:0,241,3309 0/0:25,0:25:66.21:0,66,845 0/0:49,0:49:99:0,123,1558 0/0:29,0:29:78.24:0,78,974 0/0:43,0:43:99:0,99,1278 0/0:26,0:26:72.21:0,72,873 0/0:50,0:50:99:0,123,1593 0/0:42,0:42:96.29:0,96,1246 0/0:30,0:30:78.24:0,78,974 0/0:48,0:48:99:0,117,1497 0/0:50,0:50:99:0,126,1632 0/1:29,21:50:99:582,0,720 0/0:52,0:52:99:0,132,1681 0/1:18,17:35:99:514,0,460 0/0:43,0:43:99:0,114,1449 0/0:40,0:40:99:0,111,1399 0/0:42,0:42:99:0,108,1393 10 14896155 . C G 4376.97 . 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T C 1784.19 . 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A C 40345.62 . AC=61;AF=0.726;AN=84;BaseQRankSum=-3.540;DP=1938;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.3914;InbreedingCoeff=-0.1376;MQ=58.83;MQ0=0;MQRankSum=-0.710;QD=22.40;ReadPosRankSum=-0.246 GT:AD:DP:GQ:PL 1/1:0,31:31:84.24:1031,84,0 1/1:0,42:42:99:1360,111,0 1/1:2,35:37:36.14:1142,36,0 0/0:69,0:69:99:0,178,2278 0/1:28,34:62:99:1051,0,863 0/0:68,0:68:99:0,190,2498 0/1:42,24:66:99:710,0,1235 0/1:23,23:46:99:790,0,683 1/1:0,42:42:99:1494,123,0 1/1:0,51:51:99:1768,147,0 0/1:14,24:38:99:687,0,404 0/1:24,13:37:99:295,0,727 0/1:23,26:49:99:697,0,663 1/1:1,38:39:70.53:1249,71,0 0/1:68,52:120:99:1361,0,1924 0/1:16,18:34:99:467,0,455 1/1:1,44:45:98.38:1526,98,0 1/1:0,41:41:99:1242,105,0 1/1:0,46:46:99:1477,123,0 1/1:0,46:46:99:1576,129,0 0/1:24,16:40:99:346,0,757 0/1:11,22:33:99:628,0,310 0/1:31,32:63:99:904,0,941 1/1:0,56:56:99:1923,147,0 1/1:0,48:48:99:1799,135,0 0/1:34,34:68:99:1026,0,977 1/1:0,25:25:72.18:837,72,0 1/1:0,42:43:99:1308,108,0 0/1:20,16:36:99:456,0,628 0/1:30,22:52:99:569,0,906 0/1:21,19:40:99:533,0,584 1/1:0,47:47:99:1530,120,0 1/1:0,26:26:72.19:859,72,0 1/1:0,29:29:78.22:957,78,0 1/1:0,36:36:99:1197,99,0 1/1:0,35:35:96.28:1152,96,0 0/1:29,18:48:99:416,0,943 1/1:0,39:39:96.30:1206,96,0 0/1:19,17:36:99:521,0,562 0/1:26,22:48:99:552,0,775 1/1:0,40:40:99:1257,102,0 0/1:23,18:41:99:446,0,713 10 15008554 . A G 1212.32 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.525;DP=2915;Dels=0.00;FS=2.660;HRun=1;HaplotypeScore=0.6143;InbreedingCoeff=-0.0244;MQ=59.30;MQ0=0;MQRankSum=-0.122;QD=13.78;ReadPosRankSum=-1.211 GT:AD:DP:GQ:PL 0/1:23,15:38:99:415,0,723 0/0:75,0:75:99:0,190,2440 0/0:48,0:48:99:0,135,1701 0/0:104,0:104:99:0,286,3681 0/0:87,0:87:99:0,247,3235 0/0:110,0:110:99:0,310,4127 0/0:87,0:87:99:0,235,3107 0/0:83,0:83:99:0,232,3035 0/0:63,0:63:99:0,172,2162 0/0:61,0:61:99:0,166,2095 0/0:57,0:57:99:0,166,2084 0/0:64,0:64:99:0,172,2167 0/1:19,31:50:99:860,0,530 0/0:56,0:56:99:0,159,1989 0/0:191,0:191:99:0,512,6502 0/0:31,0:31:93.29:0,93,1149 0/0:51,0:51:99:0,141,1811 0/0:58,0:59:99:0,166,2095 0/0:88,0:89:99:0,235,2973 0/0:72,1:73:99:0,196,2520 0/0:72,0:72:99:0,181,2347 0/0:45,0:45:99:0,111,1424 0/0:96,0:96:99:0,262,3461 0/0:92,0:92:99:0,250,3320 0/0:95,0:95:99:0,253,3365 0/0:110,0:110:99:0,289,3844 0/0:34,0:34:96.30:0,96,1212 0/0:56,0:56:99:0,156,1970 0/0:52,0:52:99:0,141,1788 0/0:53,0:53:99:0,144,1841 0/0:43,0:43:99:0,123,1568 0/0:83,0:83:99:0,220,2826 0/0:55,0:55:99:0,150,1901 0/0:58,0:58:99:0,166,2077 0/0:57,0:58:99:0,157,2001 0/0:72,0:72:99:0,193,2473 0/0:89,0:89:99:0,232,2957 0/0:66,0:66:99:0,175,2237 0/0:47,0:47:99:0,129,1660 0/0:56,0:56:99:0,150,1899 0/0:50,0:50:99:0,147,1834 0/0:56,0:56:99:0,153,1971 10 15106441 . A G 42779.83 . 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T G 17334.31 . AC=6;AF=0.071;AN=84;BaseQRankSum=7.018;DP=8455;DS;Dels=0.00;FS=2.274;HRun=2;HaplotypeScore=2.9982;InbreedingCoeff=-0.0769;MQ=59.65;MQ0=0;MQRankSum=0.802;QD=14.36;ReadPosRankSum=-1.821 GT:AD:DP:GQ:PL 0/0:199,0:199:99:0,554,6894 0/0:213,0:213:99:0,590,7318 0/0:182,0:182:99:0,506,6289 0/0:250,0:250:99:0,728,9094 0/0:205,0:205:99:0,596,7550 0/0:222,0:223:99:0,644,8281 0/0:209,0:209:99:0,608,7693 0/0:189,0:189:99:0,554,6932 0/0:210,0:210:99:0,581,7127 0/0:220,0:220:99:0,596,7413 0/0:180,0:180:99:0,500,6170 0/0:190,0:190:99:0,545,6716 0/0:199,0:199:99:0,554,6844 0/0:188,0:188:99:0,524,6499 0/0:249,1:250:99:0,713,8584 0/0:169,0:169:99:0,475,5850 0/0:205,1:206:99:0,556,7123 0/0:195,0:195:99:0,560,6864 0/0:187,0:190:99:0,530,6509 0/0:192,0:193:99:0,548,6710 0/0:207,0:208:99:0,584,7138 0/0:214,0:214:99:0,584,7159 0/0:250,0:250:99:0,719,9095 0/1:95,88:183:99:2722,0,2900 0/1:103,102:205:99:3227,0,3149 0/1:80,107:187:99:3329,0,2389 0/0:141,0:141:99:0,409,5055 0/0:205,0:205:99:0,569,7000 0/0:213,0:213:99:0,581,7234 0/0:188,0:188:99:0,500,6226 0/0:173,0:173:99:0,488,6038 0/0:183,0:183:99:0,515,6326 0/1:109,102:211:99:2853,0,3117 0/0:223,0:223:99:0,632,7865 0/0:216,0:216:99:0,596,7379 0/0:193,1:194:99:0,563,6910 0/1:119,97:217:99:2471,0,3368 0/0:205,1:207:99:0,566,7018 0/1:105,98:203:99:2732,0,3107 0/0:189,0:189:99:0,542,6680 0/0:194,0:194:99:0,548,6749 0/0:190,0:190:99:0,545,6678 10 16794981 . T C 473.81 . 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G T 3598.68 . 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C T 1160.40 . 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G A 2087.42 . 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T C 15250.21 . 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A G 12077.23 . 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T C 7308.85 . AC=7;AF=0.083;AN=84;BaseQRankSum=14.749;DP=2477;Dels=0.00;FS=1.823;HRun=1;HaplotypeScore=1.4805;InbreedingCoeff=-0.0909;MQ=58.83;MQ0=0;MQRankSum=1.123;QD=14.03;ReadPosRankSum=0.013 GT:AD:DP:GQ:PL 0/0:61,0:61:99:0,159,1945 0/0:46,0:46:99:0,120,1493 0/0:45,0:45:99:0,126,1534 0/0:121,0:121:99:0,322,3997 0/1:52,44:97:99:1172,0,1625 0/1:49,38:87:99:1109,0,1467 0/1:16,29:45:99:958,0,479 0/0:86,0:86:99:0,232,2932 0/0:46,0:46:99:0,126,1566 0/0:30,0:30:78.18:0,78,934 0/0:36,0:36:90.28:0,90,1122 0/0:50,0:50:99:0,141,1710 0/1:18,19:37:99:541,0,478 0/0:38,0:38:99:0,99,1244 0/0:144,0:146:99:0,367,4475 0/0:25,0:25:66.20:0,66,803 0/0:35,0:35:99:0,99,1221 0/0:37,0:37:99:0,108,1324 0/0:67,0:67:99:0,190,2319 0/1:40,45:85:99:1313,0,1163 0/0:83,0:83:99:0,220,2691 0/0:47,0:47:99:0,129,1566 0/0:136,0:136:99:0,382,4758 0/1:32,32:65:99:904,0,931 0/1:56,49:105:99:1312,0,1662 0/0:72,1:73:99:0,187,2341 0/0:36,1:37:99:0,99,1208 0/0:44,0:44:99:0,117,1466 0/0:31,0:31:81.23:0,81,968 0/0:51,0:51:99:0,138,1696 0/0:33,0:33:96.28:0,96,1149 0/0:76,1:77:99:0,208,2564 0/0:61,0:62:99:0,159,1959 0/0:39,0:39:99:0,114,1373 0/0:48,0:48:99:0,138,1679 0/0:36,0:36:96.30:0,96,1198 0/0:81,1:82:99:0,205,2512 0/0:38,2:40:69.57:0,70,1298 0/0:43,0:43:99:0,123,1499 0/0:47,0:47:99:0,129,1516 0/0:37,0:37:99:0,105,1280 0/0:41,0:41:99:0,117,1417 10 16919052 . T C 2539.40 . 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G C 148885.94 . 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C T 1257.60 . 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G A 1629.69 . 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C T 89573.98 . 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T C 2317.33 . 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C G 5636.07 . 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G A 948.93 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.005;DP=2425;Dels=0.00;FS=5.042;HRun=0;HaplotypeScore=0.9032;InbreedingCoeff=-0.0120;MQ=57.60;MQ0=0;MQRankSum=1.680;QD=12.82;ReadPosRankSum=0.871 GT:AD:DP:GQ:PL 0/0:65,0:65:99:0,187,2266 0/0:49,0:49:99:0,132,1625 0/0:51,0:51:99:0,144,1772 0/0:74,0:74:99:0,208,2718 0/1:37,37:74:99:995,0,1153 0/0:62,0:62:99:0,169,2230 0/0:53,0:53:99:0,144,1919 0/0:62,0:62:99:0,175,2302 0/0:70,0:70:99:0,199,2458 0/0:34,0:34:93.29:0,93,1156 0/0:50,0:50:99:0,129,1634 0/0:54,0:54:99:0,159,1953 0/0:57,0:57:99:0,147,1814 0/0:47,0:47:99:0,129,1624 0/0:146,0:146:99:0,385,4718 0/0:47,0:47:99:0,135,1659 0/0:43,0:43:99:0,120,1502 0/0:39,1:40:83.73:0,84,1340 0/0:65,0:66:99:0,187,2281 0/0:54,0:55:99:0,147,1809 0/0:70,0:70:99:0,187,2300 0/0:44,0:44:99:0,114,1434 0/0:88,0:88:99:0,232,3115 0/0:64,0:64:99:0,172,2323 0/0:72,0:72:99:0,184,2449 0/0:60,0:60:99:0,163,2199 0/0:40,0:40:99:0,114,1418 0/0:53,0:53:99:0,150,1859 0/0:59,0:59:99:0,172,2099 0/0:61,0:61:99:0,169,2078 0/0:45,0:45:99:0,132,1637 0/0:62,0:62:99:0,184,2232 0/0:37,0:37:99:0,105,1292 0/0:47,1:48:99:0,132,1642 0/0:55,0:55:99:0,153,1921 0/0:53,0:53:99:0,138,1759 0/0:71,0:71:99:0,178,2217 0/0:50,0:50:99:0,141,1755 0/0:38,0:38:99:0,105,1307 0/0:59,0:59:99:0,162,1981 0/0:49,0:49:99:0,141,1730 0/0:48,0:48:99:0,138,1712 10 16979661 . T C 30184.08 . 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T C 19284.64 . 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C T 6860.51 . 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G A 9093.60 . 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C T 51590.65 . 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G A 17610.24 . 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C A 1421.02 . AC=55;AF=0.982;AN=56;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.1788;InbreedingCoeff=-0.1685;MQ=57.03;MQ0=0;MQRankSum=0.452;QD=30.89;ReadPosRankSum=0.829 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:76,6,0 ./. 1/1:0,1:1:3.01:35,3,0 ./. ./. ./. ./. ./. ./. ./. ./. 1/1:0,2:2:5.99:49,6,0 1/1:0,1:1:3.01:37,3,0 1/1:0,3:3:9.03:107,9,0 1/1:0,1:1:3.01:32,3,0 1/1:0,2:2:3.01:33,3,0 1/1:0,1:1:3.01:38,3,0 1/1:0,1:1:3.01:35,3,0 1/1:0,2:2:6.02:71,6,0 1/1:0,3:3:9.01:90,9,0 1/1:0,2:2:6.01:66,6,0 1/1:0,1:1:3.01:36,3,0 1/1:0,1:1:3:29,3,0 ./. 1/1:0,1:1:3.01:30,3,0 ./. 1/1:0,1:1:3.01:39,3,0 ./. 1/1:0,2:2:6.02:75,6,0 1/1:0,1:1:3.01:37,3,0 1/1:0,1:1:3.01:38,3,0 1/1:0,3:3:9.03:107,9,0 1/1:0,3:3:9.02:97,9,0 1/1:0,2:2:3.01:45,3,0 1/1:0,1:1:2.99:23,3,0 1/1:0,2:2:6.02:73,6,0 0/1:1,1:2:15.67:33,0,16 1/1:0,1:1:3.01:34,3,0 ./. 1/1:0,2:2:6.02:76,6,0 ./. 1/1:0,1:1:3.01:37,3,0 10 17659149 . C T 1831.36 . AC=62;AF=1.000;AN=62;DP=54;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0627;InbreedingCoeff=-0.1439;MQ=56.93;MQ0=0;QD=34.55 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:37,3,0 1/1:0,1:1:3.01:35,3,0 1/1:0,2:2:6.02:69,6,0 ./. ./. ./. ./. ./. ./. ./. ./. 1/1:0,3:3:9.02:101,9,0 1/1:0,1:1:3.01:36,3,0 1/1:0,3:3:9.03:107,9,0 1/1:0,2:2:6.02:69,6,0 1/1:0,1:1:3.01:37,3,0 1/1:0,4:4:12.04:145,12,0 1/1:0,1:1:3.01:36,3,0 1/1:0,3:3:9.02:96,9,0 1/1:0,3:3:9.02:100,9,0 1/1:0,3:3:9.03:110,9,0 1/1:0,1:1:3.01:37,3,0 1/1:0,1:1:3.01:36,3,0 ./. 1/1:0,1:1:3.01:37,3,0 ./. 1/1:0,1:1:3.01:37,3,0 ./. 1/1:0,1:1:3.01:36,3,0 1/1:0,1:1:3.01:38,3,0 1/1:0,1:1:3.01:37,3,0 1/1:0,3:3:9.03:108,9,0 1/1:0,3:3:9.03:111,9,0 1/1:0,1:1:3.01:39,3,0 1/1:0,2:2:6.02:69,6,0 1/1:0,2:2:6.02:67,6,0 1/1:0,2:2:6.02:72,6,0 1/1:0,1:1:3:29,3,0 1/1:0,1:1:3.01:36,3,0 1/1:0,1:1:3.01:36,3,0 1/1:0,1:1:3.01:36,3,0 1/1:0,1:1:3.01:36,3,0 10 17756596 . T C 16972.08 . 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T C 554.63 . AC=13;AF=0.155;AN=84;BaseQRankSum=-20.210;DP=2553;DS;Dels=0.00;FS=1140.600;HRun=2;HaplotypeScore=8.7183;InbreedingCoeff=-0.2027;MQ=57.00;MQ0=0;MQRankSum=-6.930;QD=0.70;ReadPosRankSum=-5.747 GT:AD:DP:GQ:PL 0/1:35,8:44:56.89:57,0,1136 0/0:45,3:48:68.81:0,69,1522 0/0:45,4:49:50.66:0,51,1528 0/0:83,10:93:40.21:0,40,2762 0/0:90,5:95:99:0,114,3201 0/0:57,7:64:67.24:0,67,2044 0/1:47,10:57:21.09:21,0,1568 0/1:67,12:79:47.83:48,0,2225 0/0:36,2:38:99:0,105,1274 0/0:37,3:40:99:0,111,1346 0/0:32,5:37:14.59:0,15,1082 0/1:32,6:38:8.17:8,0,1023 0/0:31,5:36:1.87:3,0,1003 0/0:34,6:40:52.01:0,52,1209 0/0:106,8:114:99:0,242,3715 0/1:42,6:48:11.47:11,0,1333 0/0:48,8:56:20.91:0,21,1530 0/0:34,2:36:72.82:0,73,1210 0/0:87,3:90:99:0,176,3062 0/1:87,19:106:50.70:51,0,2823 0/0:87,9:96:99:0,129,2854 0/0:47,4:51:87.23:0,87,1593 0/0:102,8:111:99:0,155,3589 0/1:46,14:60:99:128,0,1540 0/1:81,17:99:99:113,0,2695 0/1:51,13:65:99:108,0,1699 0/0:27,3:30:57.57:0,58,959 0/0:41,5:46:33.01:0,33,1345 0/0:46,11:57:4.68:0,5,1523 0/1:35,8:43:32.49:32,0,1155 0/0:35,2:37:83.63:0,84,1233 0/0:91,12:103:52.09:0,52,3071 0/0:42,10:52:12.27:0,12,1378 0/0:41,7:48:92.95:0,93,1483 0/1:40,9:49:32.58:33,0,1244 0/0:44,10:54:33.28:0,33,1425 0/0:86,4:90:99:0,190,3005 0/1:45,13:58:7.09:7,0,1500 0/0:45,6:51:18.70:0,19,1516 0/0:52,6:58:2.90:0,0,1690 0/1:36,6:42:78.14:78,0,1194 0/0:40,5:45:36.01:0,36,1387 10 17756630 . A C 291.40 . AC=5;AF=0.060;AN=84;BaseQRankSum=-29.121;DP=3906;Dels=0.00;FS=790.819;HRun=1;HaplotypeScore=1.7773;InbreedingCoeff=-0.0727;MQ=57.34;MQ0=0;MQRankSum=3.493;QD=0.44;ReadPosRankSum=-20.744 GT:AD:DP:GQ:PL 0/0:44,12:57:99:0,123,1435 0/0:49,23:72:62.47:0,62,1496 0/0:47,22:69:99:0,132,1619 0/0:94,49:143:99:0,110,2994 0/0:116,61:178:99:0,278,3960 0/0:71,36:108:99:0,145,2267 0/0:74,27:101:99:0,150,2251 0/0:85,36:121:99:0,178,2897 0/0:46,18:64:99:0,126,1509 0/0:44,30:74:9.02:0,9,1278 0/0:38,22:60:99:0,105,1242 0/0:44,25:69:51.32:0,51,1326 0/0:46,18:64:77.88:0,78,1436 0/0:52,21:73:40.45:0,40,1595 0/1:139,87:226:58.61:59,0,3884 0/0:36,21:57:33.26:0,33,1129 0/0:50,28:78:93.08:0,93,1554 0/0:45,24:69:68.19:0,68,1396 0/1:84,36:120:99:154,0,2465 0/0:107,34:141:99:0,237,3401 0/1:84,41:125:38.75:39,0,2430 0/0:52,32:84:57.29:0,57,1468 0/0:133,54:187:99:0,266,4432 0/0:61,28:89:99:0,144,1935 0/0:91,35:127:99:0,203,3042 0/0:71,34:106:99:0,176,2346 0/0:25,18:43:15.18:0,15,817 0/1:54,23:77:14.07:14,0,1509 0/0:46,16:62:98.17:0,98,1399 0/0:41,22:63:62.98:0,63,1264 0/0:44,22:67:30.62:0,31,1264 0/0:94,46:142:99:0,223,2908 0/0:68,24:92:99:0,142,2215 0/0:52,23:76:99:0,105,1520 0/0:51,19:70:99:0,112,1596 0/0:52,22:74:99:0,138,1601 0/1:69,38:107:99:120,0,2104 0/0:59,27:87:99:0,104,1711 0/0:44,29:73:2.33:1,0,1439 0/0:48,26:74:72.44:0,72,1457 0/0:48,20:68:99:0,108,1586 0/0:46,23:69:52.37:0,52,1323 10 17869577 . C T 105.81 . AC=8;AF=0.500;AN=16;BaseQRankSum=-2.488;DP=5037;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=1.46;MQ0=5015;MQRankSum=0.174;QD=0.17;ReadPosRankSum=0.405 GT:AD:DP:GQ:PL ./. ./. ./. ./. 0/0:125,0:125:3.01:0,3,39 1/1:79,61:140:3.01:33,3,0 ./. ./. 0/1:44,50:95:18.68:19,0,27 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/1:85,66:153:1.76:33,3,0 0/0:60,50:111:3.01:0,3,39 0/0:193,0:194:6:0,6,58 ./. ./. 1/1:45,61:106:3.01:39,3,0 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 1/1:82,61:143:3.01:38,3,0 ./. ./. ./. ./. ./. 10 17891606 . C G 5002.31 . AC=3;AF=0.038;AN=80;BaseQRankSum=13.050;DP=4093;Dels=0.00;FS=2.897;HRun=0;HaplotypeScore=1.4722;InbreedingCoeff=0.6537;MQ=36.73;MQ0=573;MQRankSum=2.268;QD=14.93;ReadPosRankSum=4.096 GT:AD:DP:GQ:PL ./. 0/0:55,0:55:96.27:0,96,1173 0/0:84,0:84:99:0,174,2144 1/1:9,103:112:99:2761,211,0 0/1:128,95:223:99:2242,0,3230 0/0:177,0:177:99:0,397,5051 0/0:161,0:161:99:0,367,4662 0/0:189,0:189:99:0,427,5366 0/0:57,0:57:99:0,120,1412 0/0:71,0:71:99:0,135,1583 0/0:68,0:68:99:0,147,1781 0/0:108,0:108:99:0,241,2887 0/0:81,0:81:99:0,174,2089 0/0:101,0:101:99:0,217,2649 0/0:161,0:161:99:0,343,4149 0/0:85,0:85:99:0,181,2201 0/0:49,0:49:99:0,111,1358 0/0:95,0:95:99:0,202,2395 0/0:108,0:109:99:0,214,2563 0/0:97,0:97:99:0,196,2386 0/0:85,0:86:99:0,181,2179 0/0:50,0:50:93.26:0,93,1142 0/0:116,0:116:99:0,235,3054 0/0:91,0:91:99:0,159,1993 0/0:157,0:157:99:0,337,4307 ./. 0/0:58,0:58:99:0,126,1480 0/0:52,0:52:99:0,102,1226 0/0:92,0:92:99:0,223,2644 0/0:81,0:81:99:0,181,2152 0/0:82,0:82:99:0,183,2158 0/0:96,0:96:99:0,205,2426 0/0:101,0:101:99:0,232,2747 0/0:113,0:113:99:0,247,2953 0/0:93,0:93:99:0,193,2328 0/0:71,0:71:99:0,138,1682 0/0:126,0:126:99:0,283,3301 0/0:96,0:96:99:0,232,2794 0/0:110,0:110:99:0,220,2688 0/0:99,0:99:99:0,226,2676 0/0:101,0:102:99:0,226,2767 0/0:109,0:109:99:0,226,2702 10 17891705 . A G 73981.83 . AC=40;AF=0.488;AN=82;BaseQRankSum=-32.020;DP=6319;DS;Dels=0.00;FS=4.784;HRun=1;HaplotypeScore=3.6505;InbreedingCoeff=0.2030;MQ=49.48;MQ0=165;MQRankSum=-17.499;QD=16.17;ReadPosRankSum=2.273 GT:AD:DP:GQ:PL ./. 1/1:3,69:72:73.81:1535,74,0 0/1:72,75:148:99:1625,0,2130 1/1:0,135:136:99:4056,349,0 0/1:138,109:247:99:2756,0,4045 0/1:120,126:246:99:3041,0,3623 0/1:127,119:247:99:2918,0,3748 0/1:126,117:244:99:2933,0,3595 0/0:92,0:92:99:0,253,3005 0/1:74,67:141:99:1500,0,2025 1/1:1,69:70:99:1874,137,0 1/1:0,149:149:99:3909,352,0 0/1:76,60:137:99:1231,0,2230 0/1:98,71:170:99:1500,0,2948 0/0:241,0:241:99:0,650,7837 0/0:127,1:128:99:0,355,4329 0/0:97,0:97:99:0,259,3153 1/1:2,151:153:99:4010,308,0 1/1:0,127:127:99:3522,322,0 1/1:0,153:153:99:4041,358,0 0/0:130,0:130:99:0,346,4308 0/0:99,0:99:99:0,268,3243 1/1:1,171:172:99:5033,387,0 0/0:134,1:135:99:0,334,4458 0/1:149,100:250:99:2244,0,4477 0/0:1,0:1:3.01:0,3,38 1/1:0,116:117:99:3143,289,0 1/1:0,91:91:99:2374,217,0 0/1:98,65:163:99:1255,0,2843 0/0:168,0:168:99:0,478,5837 0/1:78,67:145:99:1313,0,2207 0/0:174,0:176:99:0,448,5505 0/0:203,1:204:99:0,557,6677 0/0:174,0:174:99:0,499,6038 0/1:95,87:182:99:1772,0,2712 0/0:97,1:98:99:0,227,3120 1/1:0,238:238:99:5995,547,0 0/1:98,91:191:99:1854,0,2803 1/1:0,154:154:99:4169,379,0 0/1:84,75:159:99:1669,0,2351 0/1:68,59:127:99:1108,0,2051 0/1:74,72:146:99:1604,0,2159 10 18116531 . C T 80.33 . AC=8;AF=0.167;AN=48;BaseQRankSum=-2.220;DP=4954;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;InbreedingCoeff=0.0924;MQ=2.69;MQ0=4906;MQRankSum=-2.103;QD=0.10;ReadPosRankSum=1.344 GT:AD:DP:GQ:PL 0/0:58,35:93:3.01:0,3,33 1/1:63,52:115:3:28,3,0 ./. 0/0:174,0:175:2.98:0,3,22 0/0:155,0:155:6.01:0,6,61 ./. ./. 0/0:72,53:126:6.01:0,6,55 ./. 0/0:112,0:113:6.02:0,6,67 0/1:43,42:85:21.65:22,0,33 ./. 0/0:94,0:96:6.01:0,6,55 0/0:58,36:94:2.98:0,3,22 1/1:126,122:249:3:28,3,0 ./. ./. 0/0:120,1:121:6.01:0,6,61 0/0:161,0:164:3:0,3,28 0/0:186,0:187:6.01:0,6,65 0/0:95,73:168:3.01:0,3,39 0/0:56,43:99:6.01:0,6,55 0/0:181,0:182:15.04:0,15,173 0/1:67,43:110:15.65:16,0,77 0/1:0,117:117:1.76:28,3,0 ./. ./. 0/1:55,51:106:27.96:48,0,28 0/0:91,0:91:3:0,3,28 ./. ./. 0/0:85,76:162:6.02:0,6,79 ./. ./. 0/0:114,1:115:12.02:0,12,122 ./. ./. ./. ./. 0/0:114,0:114:3:0,3,28 0/0:49,42:91:3.01:0,3,33 ./. 10 18816565 . G A 2820.09 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.559;DP=4875;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.7755;InbreedingCoeff=-0.0120;MQ=59.48;MQ0=0;MQRankSum=1.051;QD=15.24;ReadPosRankSum=0.671 GT:AD:DP:GQ:PL 0/0:97,1:98:99:0,261,3115 0/0:90,0:90:99:0,241,2865 0/0:79,0:81:99:0,205,2531 0/0:183,0:183:99:0,485,6330 0/0:147,0:147:99:0,373,4917 0/0:139,0:139:99:0,346,4531 0/0:119,0:119:99:0,301,3922 0/0:126,0:126:99:0,331,4273 0/0:125,0:125:99:0,325,3923 0/0:82,0:82:99:0,217,2567 0/0:95,0:95:99:0,244,2933 0/0:93,0:93:99:0,256,3038 0/0:85,0:85:99:0,223,2656 0/0:101,0:101:99:0,268,3226 0/0:240,0:240:99:0,629,7478 0/0:86,0:86:99:0,235,2818 0/0:101,0:101:99:0,280,3332 0/0:85,0:85:99:0,238,2829 0/0:165,0:165:99:0,427,5074 0/0:167,0:168:99:0,436,5344 0/0:171,0:172:99:0,460,5491 0/0:87,0:87:99:0,226,2722 0/0:184,0:184:99:0,439,5814 0/0:118,0:118:99:0,295,3891 0/0:126,0:126:99:0,328,4251 0/0:125,0:125:99:0,316,4077 0/0:70,0:70:99:0,196,2350 0/0:115,0:115:99:0,313,3705 0/0:96,0:96:99:0,256,3073 0/0:71,0:71:99:0,187,2243 0/0:90,0:90:99:0,241,2928 0/1:83,102:185:99:2866,0,1995 0/0:109,0:109:99:0,277,3384 0/0:92,0:92:99:0,250,3000 0/0:104,0:104:99:0,268,3283 0/0:111,0:111:99:0,292,3556 0/0:135,0:135:99:0,361,4219 0/0:118,0:118:99:0,322,3824 0/0:79,0:79:99:0,217,2602 0/0:111,0:111:99:0,295,3583 0/0:87,0:87:99:0,244,2901 0/0:80,0:80:99:0,223,2688 10 18964097 . G A 7686.86 . AC=6;AF=0.071;AN=84;BaseQRankSum=-17.815;DP=4142;Dels=0.00;FS=0.546;HRun=0;HaplotypeScore=1.0072;InbreedingCoeff=-0.0769;MQ=59.45;MQ0=0;MQRankSum=0.102;QD=12.64;ReadPosRankSum=0.739 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,178,2277 0/0:59,0:59:99:0,168,2092 0/0:62,0:62:99:0,172,2190 0/0:198,0:198:99:0,497,6784 0/0:185,0:185:99:0,494,6785 0/0:215,0:215:99:0,551,7534 0/0:143,0:143:99:0,370,5058 0/0:159,0:159:99:0,436,5929 0/0:78,0:78:99:0,202,2597 0/0:54,0:54:99:0,147,1881 0/0:68,0:68:99:0,184,2373 0/0:98,0:98:99:0,265,3391 0/0:67,0:67:99:0,187,2388 0/1:39,36:75:99:1023,0,1188 0/1:98,101:199:99:2652,0,2694 0/0:45,0:45:99:0,129,1643 0/1:33,34:67:99:1032,0,1000 0/0:60,0:60:99:0,156,1978 0/0:104,0:104:99:0,274,3471 0/0:107,0:107:99:0,280,3568 0/0:113,0:113:99:0,289,3702 0/0:54,0:54:99:0,141,1827 0/0:231,0:232:99:0,596,8203 0/0:182,0:182:99:0,476,6498 0/0:201,0:201:99:0,533,7230 0/1:102,57:159:99:1487,0,3160 0/1:21,20:41:99:533,0,656 0/0:64,0:65:99:0,181,2278 0/1:34,33:67:99:960,0,1047 0/0:64,0:64:99:0,166,2127 0/0:50,0:50:99:0,135,1738 0/0:119,0:119:99:0,310,4048 0/0:77,0:77:99:0,205,2641 0/0:64,0:64:99:0,166,2105 0/0:55,0:55:99:0,156,1946 0/0:74,0:74:99:0,199,2523 0/0:106,0:106:99:0,280,3530 0/0:65,0:65:99:0,169,2168 0/0:65,0:65:99:0,175,2239 0/0:59,0:59:99:0,166,2102 0/0:72,0:72:99:0,202,2547 0/0:48,0:48:99:0,132,1702 10 23250811 . A AG 211.38 . 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A G 1475.81 . 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T C 8843.84 . 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G A 52638.53 . 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C T 3199.09 . 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A T 8795.09 . 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C T 408.48 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.972;DP=3083;Dels=0.00;FS=4.499;HRun=0;HaplotypeScore=1.2205;InbreedingCoeff=-0.0120;MQ=59.48;MQ0=0;MQRankSum=0.662;QD=9.73;ReadPosRankSum=1.171 GT:AD:DP:GQ:PL 0/0:56,0:57:99:0,156,1972 0/0:60,0:60:99:0,163,2075 0/1:24,18:42:99:455,0,645 0/0:130,0:130:99:0,346,4699 0/0:118,0:118:99:0,319,4316 0/0:125,0:125:99:0,328,4528 0/0:108,0:108:99:0,274,3763 0/0:109,0:109:99:0,283,3843 0/0:55,0:55:99:0,153,1939 0/0:42,0:43:99:0,105,1367 0/0:41,0:41:99:0,120,1504 0/0:60,0:60:99:0,175,2174 0/0:48,0:48:99:0,135,1697 0/0:50,0:50:99:0,129,1656 0/0:201,0:201:99:0,527,6719 0/0:36,0:36:99:0,99,1251 0/0:64,0:64:99:0,169,2163 0/0:55,0:55:99:0,153,1927 0/0:92,0:92:99:0,232,2970 0/0:68,0:68:99:0,178,2258 0/0:74,0:74:99:0,187,2397 0/0:47,0:47:99:0,126,1614 0/0:156,0:156:99:0,403,5593 0/0:113,0:113:99:0,301,4086 0/0:108,0:108:99:0,271,3743 0/0:116,0:116:99:0,301,4148 0/0:37,0:37:93.30:0,93,1209 0/0:55,0:55:99:0,156,1963 0/0:49,0:49:99:0,138,1746 0/0:51,0:51:99:0,132,1708 0/0:59,0:59:99:0,153,1974 0/0:70,0:71:99:0,187,2387 0/0:36,0:36:99:0,102,1282 0/0:45,0:45:99:0,126,1599 0/0:54,0:54:99:0,147,1879 0/0:80,0:80:99:0,205,2645 0/0:61,0:61:99:0,153,1997 0/0:67,0:67:99:0,160,2090 0/0:65,0:65:99:0,178,2242 0/0:56,0:56:99:0,159,2006 0/0:56,0:56:99:0,159,1983 0/0:65,0:65:99:0,184,2356 10 27322303 . C G 971.84 . 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C T 3042.25 . 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TA T 856.82 . AC=17;AF=0.202;AN=84;BaseQRankSum=9.490;DP=644;FS=2.887;HRun=12;HaplotypeScore=37.2888;InbreedingCoeff=-0.1956;MQ=59.04;MQ0=0;MQRankSum=1.416;QD=3.56;ReadPosRankSum=0.933 GT:AD:DP:GQ:PL 0/1:8,4:12:88.91:129,0,89 0/1:9,1:10:28.45:28,0,102 0/0:11,0:12:17.54:0,18,148 0/0:10,0:10:21.04:0,21,213 0/1:12,3:15:45.99:46,0,154 0/0:8,0:8:15.03:0,15,152 0/0:11,0:11:18.01:0,18,173 0/0:15,0:15:26.89:0,27,256 0/1:16,4:20:53.88:54,0,231 0/0:18,1:19:21.85:0,22,403 0/0:11,0:11:24.04:0,24,239 0/0:14,1:15:9.83:0,10,281 0/0:19,1:20:29.22:0,29,464 0/1:10,2:12:25.44:25,0,131 0/0:45,4:52:35.61:0,36,1020 0/1:6,2:8:31.45:31,0,73 0/1:15,3:18:30.65:31,0,257 0/1:7,5:12:63.11:92,0,63 0/0:13,0:13:21.04:0,21,211 0/0:14,0:17:37.62:0,38,340 0/1:25,6:31:56.09:56,0,389 0/0:9,1:10:0.81:0,1,189 0/1:8,1:9:5.20:5,0,134 0/1:7,1:8:8.21:8,0,107 0/1:6,1:8:15.06:15,0,77 0/0:2,0:2:6.01:0,6,61 0/0:19,0:19:51.10:0,51,514 0/0:16,0:16:27.05:0,27,274 0/0:12,0:12:33.06:0,33,333 0/1:9,4:13:89.04:89,0,95 0/1:9,9:19:99:191,0,99 0/0:20,0:21:41.92:0,42,410 0/0:20,1:21:27.82:0,28,454 0/0:18,3:20:7.63:0,8,441 0/1:9,2:11:16.42:16,0,210 0/0:14,0:16:23.87:0,24,216 0/0:13,2:15:15.67:0,16,326 0/0:10,0:11:14.19:0,14,177 0/0:22,1:23:21.85:0,22,403 0/1:16,3:20:21.73:22,0,325 0/1:7,7:15:2.36:184,1,0 0/0:12,0:11:26.89:0,27,256 10 27356132 . A T 1191.80 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.709;DP=2867;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=1.7113;InbreedingCoeff=-0.0244;MQ=57.65;MQ0=0;MQRankSum=3.147;QD=10.36;ReadPosRankSum=-1.196 GT:AD:DP:GQ:PL 0/0:61,0:61:99:0,172,2079 0/0:64,0:64:99:0,171,2072 0/0:55,0:55:99:0,159,1901 0/0:79,0:79:99:0,226,2737 0/0:75,0:75:99:0,211,2630 0/0:89,0:89:99:0,247,3153 0/0:72,0:72:99:0,202,2522 0/0:80,0:80:99:0,223,2754 0/1:36,24:60:99:621,0,1034 0/0:73,0:73:99:0,202,2432 0/1:33,22:55:99:633,0,977 0/0:67,0:67:99:0,181,2191 0/0:44,0:44:99:0,120,1469 0/0:66,0:66:99:0,184,2244 0/0:162,0:162:99:0,445,5390 0/0:43,0:43:99:0,126,1499 0/0:54,0:54:99:0,150,1824 0/0:69,0:69:99:0,193,2331 0/0:100,0:100:99:0,271,3294 0/0:78,0:78:99:0,217,2652 0/0:95,0:95:99:0,256,3152 0/0:69,0:69:99:0,187,2242 0/0:86,0:86:99:0,244,2979 0/0:69,0:69:99:0,196,2434 0/0:68,0:68:99:0,187,2320 0/0:74,0:74:99:0,202,2521 0/0:49,0:49:99:0,144,1733 0/0:52,0:52:99:0,150,1812 0/0:54,0:54:99:0,150,1826 0/0:72,0:72:99:0,205,2445 0/0:53,0:53:99:0,147,1798 0/0:79,0:79:99:0,217,2682 0/0:58,0:58:99:0,153,1880 0/0:61,0:61:99:0,175,2139 0/0:51,0:51:99:0,153,1830 0/0:59,0:59:99:0,162,1984 0/0:76,0:76:99:0,202,2482 0/0:50,0:50:99:0,138,1666 0/0:58,0:58:99:0,172,2049 0/0:68,0:68:99:0,187,2249 0/0:50,0:50:99:0,135,1670 0/0:70,0:70:99:0,202,2455 10 27356140 . T C 2448.14 . AC=2;AF=0.024;AN=84;BaseQRankSum=10.594;DP=2688;Dels=0.00;FS=11.417;HRun=0;HaplotypeScore=1.3239;InbreedingCoeff=-0.0244;MQ=57.77;MQ0=0;MQRankSum=3.867;QD=15.69;ReadPosRankSum=2.877 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,159,1940 0/0:52,0:52:99:0,147,1782 0/0:55,0:56:99:0,162,1967 0/0:75,0:75:99:0,214,2674 0/0:75,0:75:99:0,214,2738 0/1:44,40:84:99:1318,0,1332 0/0:66,0:66:99:0,184,2393 0/1:37,35:72:99:1193,0,1114 0/0:49,0:49:99:0,141,1710 0/0:68,0:68:99:0,196,2373 0/0:47,0:48:99:0,141,1715 0/0:63,0:63:99:0,172,2138 0/0:41,0:41:99:0,114,1419 0/0:60,0:60:99:0,175,2128 0/0:153,0:153:99:0,418,5195 0/0:45,0:45:99:0,132,1627 0/0:52,0:52:99:0,147,1794 0/0:60,0:60:99:0,172,2128 0/0:80,0:80:99:0,229,2809 0/0:79,0:79:99:0,226,2813 0/0:90,0:91:99:0,244,3070 0/0:55,0:56:99:0,150,1877 0/0:83,0:83:99:0,244,3072 0/0:68,1:69:99:0,193,2499 0/0:69,0:69:99:0,202,2565 0/0:69,0:69:99:0,193,2457 0/0:50,0:50:99:0,147,1810 0/0:46,0:46:99:0,132,1641 0/0:54,0:54:99:0,159,1961 0/0:69,0:69:99:0,202,2439 0/0:50,0:50:99:0,144,1748 0/0:83,0:83:99:0,226,2816 0/0:49,0:49:99:0,132,1651 0/0:62,0:62:99:0,181,2196 0/0:46,0:46:99:0,135,1663 0/0:56,0:56:99:0,160,1993 0/0:73,0:73:99:0,196,2450 0/0:44,1:45:99:0,126,1527 0/0:49,0:50:99:0,144,1746 0/0:67,0:67:99:0,184,2264 0/0:48,0:48:99:0,135,1681 0/0:68,0:68:99:0,202,2499 10 27389197 . T C 59444.99 . 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T C 137870.87 . 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G A 3158.69 . 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G A 1178.12 . 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A G 4417.42 . 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A C 33580.93 . 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A G 38820.47 . 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C T 2146.26 . 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C G 187.79 . AC=6;AF=0.071;AN=84;BaseQRankSum=-19.446;DP=3362;Dels=0.00;FS=901.010;HRun=1;HaplotypeScore=1.9190;InbreedingCoeff=-0.0847;MQ=58.53;MQ0=0;MQRankSum=3.933;QD=0.45;ReadPosRankSum=-16.687 GT:AD:DP:GQ:PL 0/0:49,13:62:99:0,101,1409 0/0:48,15:63:86.72:0,87,1308 0/1:40,11:51:13.99:14,0,987 0/0:93,51:144:99:0,150,3118 0/0:84,30:114:88.78:0,89,2677 0/1:71,22:93:50.58:51,0,1927 0/0:66,16:82:99:0,138,2004 0/0:66,17:83:99:0,168,2097 0/0:51,16:67:17.11:0,17,1395 0/0:40,12:52:90.12:0,90,1053 0/0:56,17:73:83.30:0,83,1543 0/0:57,16:73:89.32:0,89,1636 0/0:40,6:46:29.21:0,29,956 0/0:46,11:57:60.99:0,61,1238 0/0:164,53:217:64.73:0,65,4473 0/1:23,23:46:46.78:47,0,694 0/0:59,20:79:43.79:0,44,1640 0/0:59,18:78:80.61:0,81,1742 0/0:64,26:90:39.85:0,40,1627 0/0:83,20:103:99:0,107,2118 0/1:62,25:87:48.42:48,0,1731 0/0:59,21:81:59.34:0,59,1372 0/0:102,47:149:78.52:0,79,3107 0/0:63,18:81:99:0,128,1892 0/0:77,30:107:80.41:0,80,2184 0/0:48,19:67:99:0,105,1274 0/0:38,14:52:26.85:0,27,834 0/0:52,18:70:19.90:0,20,1346 0/0:37,21:58:15.29:0,15,930 0/0:62,18:81:84.71:0,85,1465 0/0:38,16:54:54.89:0,55,1109 0/0:82,17:99:99:0,165,1919 0/0:71,14:86:99:0,111,1650 0/0:56,15:71:70.64:0,71,1529 0/0:45,13:59:67.73:0,68,1129 0/0:48,21:69:2.91:0,0,1298 0/1:57,22:79:80.99:81,0,1528 0/0:47,18:65:44.54:0,45,1320 0/0:46,20:66:15.81:0,16,1268 0/0:62,18:80:99:0,113,1864 0/1:44,16:60:50.95:51,0,1049 0/0:57,11:68:79.34:0,79,1521 10 28257852 . C T 489.06 . AC=16;AF=0.258;AN=62;BaseQRankSum=-1.637;DP=6322;DS;Dels=0.00;FS=5.328;HRun=0;HaplotypeScore=0.7297;InbreedingCoeff=0.3744;MQ=3.16;MQ0=6158;MQRankSum=3.694;QD=0.32;ReadPosRankSum=-1.149 GT:AD:DP:GQ:PL ./. ./. 0/0:120,0:120:3.01:0,3,30 0/0:250,0:250:6.01:0,6,60 0/0:241,0:241:3.01:0,3,33 0/0:249,1:250:12.02:0,12,126 0/0:213,1:214:6.01:0,6,60 0/0:248,0:250:15:0,15,133 0/0:98,0:98:3.01:0,3,33 1/1:80,25:105:9:80,9,0 0/0:137,1:138:3.01:0,3,33 ./. 1/1:85,19:104:3:27,3,0 0/0:148,0:148:3:0,3,27 0/0:242,0:243:6:0,6,53 0/0:89,0:89:3:0,3,27 1/1:91,32:123:9.01:92,9,0 ./. 0/0:179,0:182:3:0,3,27 0/0:160,0:160:6:0,6,53 0/1:123,42:166:20.61:44,0,21 0/0:96,0:96:3.01:0,3,33 1/1:185,63:248:3:27,3,0 1/1:160,61:221:12.01:119,12,0 0/1:185,65:250:18.41:102,0,18 0/0:213,0:213:3:0,3,27 ./. 0/0:112,0:112:3.01:0,3,33 0/0:101,0:101:6.01:0,6,60 ./. 0/0:96,0:96:15:0,15,133 1/1:134,32:166:6:53,6,0 ./. ./. ./. 1/1:104,29:133:9:80,9,0 0/0:158,0:158:12.02:0,12,120 0/0:133,0:133:3:0,3,27 0/0:124,0:124:12:0,12,107 ./. 0/0:120,0:120:3:0,3,27 ./. 10 28257853 . G C 332.64 . AC=8;AF=0.125;AN=64;BaseQRankSum=5.012;DP=6392;DS;Dels=0.00;FS=2.474;HRun=2;HaplotypeScore=0.7066;InbreedingCoeff=0.2020;MQ=3.20;MQ0=6217;MQRankSum=2.294;QD=0.34;ReadPosRankSum=-1.597 GT:AD:DP:GQ:PL ./. ./. 0/0:120,0:120:3.01:0,3,31 0/0:247,0:250:6.01:0,6,60 0/0:247,0:247:3.01:0,3,33 0/1:183,67:250:21.41:81,0,21 0/0:217,0:218:6.01:0,6,60 1/1:183,66:250:12:107,12,0 0/0:87,11:98:3.01:0,3,32 0/0:75,27:102:9:0,9,80 0/0:141,0:141:3.01:0,3,31 ./. 0/0:104,0:104:3:0,3,27 0/0:146,0:146:3:0,3,27 1/1:196,51:248:6:53,6,0 0/0:74,17:91:3:0,3,27 0/0:122,0:122:9.01:0,9,91 ./. 0/0:186,0:186:3:0,3,27 0/0:162,0:162:6:0,6,53 0/0:137,31:168:9.01:0,9,83 0/0:72,26:98:3.01:0,3,32 0/0:250,0:250:3:0,3,27 0/0:222,0:222:12.01:0,12,119 0/0:250,0:250:15.02:0,15,152 0/0:220,0:220:3:0,3,27 ./. 0/0:112,0:112:3.01:0,3,32 0/0:105,0:105:6.01:0,6,60 ./. 0/1:72,27:99:38.35:65,0,38 0/0:134,35:169:6:0,6,53 ./. ./. ./. 0/0:135,0:135:9:0,9,80 0/0:159,0:160:12.02:0,12,118 0/0:133,0:133:3:0,3,27 1/1:93,32:125:15:133,15,0 ./. 0/0:103,20:123:3:0,3,27 0/0:127,0:127:3:0,3,27 10 28260151 . A G 2178.04 . AC=2;AF=0.024;AN=84;BaseQRankSum=8.092;DP=3326;DS;Dels=0.00;FS=1.676;HRun=0;HaplotypeScore=1.3513;InbreedingCoeff=-0.0244;MQ=55.83;MQ0=36;MQRankSum=3.644;QD=12.89;ReadPosRankSum=-0.864 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,132,1565 0/0:62,0:62:99:0,178,2120 0/1:20,21:41:99:642,0,553 0/0:163,0:163:99:0,469,5639 0/0:158,0:158:99:0,454,5521 0/0:134,0:134:99:0,385,4774 0/1:76,52:128:99:1599,0,2324 0/0:142,0:143:99:0,403,4926 0/0:36,0:36:99:0,105,1251 0/0:41,0:41:99:0,120,1427 0/0:52,0:52:99:0,147,1753 0/0:49,0:49:99:0,141,1694 0/0:54,0:54:99:0,150,1799 0/0:63,0:63:99:0,184,2160 0/0:175,0:178:99:0,484,5688 0/0:47,0:47:99:0,135,1593 0/0:52,0:52:99:0,153,1797 0/0:48,0:48:99:0,141,1678 0/0:81,0:81:99:0,220,2686 0/0:90,0:90:99:0,250,3060 0/0:85,0:85:99:0,232,2771 0/0:43,0:43:99:0,120,1390 0/0:184,0:184:99:0,533,6521 0/0:111,0:111:99:0,331,4054 0/0:153,0:153:99:0,430,5340 0/0:132,0:132:99:0,379,4626 0/0:39,0:39:99:0,117,1398 0/0:64,0:64:99:0,190,2238 0/0:43,0:43:99:0,123,1480 0/0:63,0:63:99:0,172,2063 0/0:48,0:48:99:0,138,1661 0/0:81,0:81:99:0,232,2821 0/0:66,0:66:99:0,190,2290 0/0:54,0:54:99:0,159,1897 0/0:54,0:54:99:0,156,1858 0/0:64,0:64:99:0,174,2080 0/0:82,0:82:99:0,229,2693 0/0:60,0:60:99:0,172,2060 0/0:49,0:49:99:0,147,1747 0/0:64,0:64:99:0,184,2202 0/0:65,0:65:99:0,178,2112 0/0:56,0:56:99:0,162,1934 10 28260162 . G A 477.55 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.082;DP=2999;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.4683;InbreedingCoeff=-0.0120;MQ=55.58;MQ0=61;MQRankSum=2.487;QD=11.65;ReadPosRankSum=-2.391 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,114,1445 0/0:53,0:53:99:0,144,1805 0/0:35,0:35:99:0,102,1285 0/0:145,0:145:99:0,409,5376 0/0:142,0:142:99:0,406,5429 0/0:125,0:125:99:0,349,4611 0/0:115,0:115:99:0,325,4309 0/0:125,0:125:99:0,331,4434 0/0:30,0:30:84.26:0,84,1054 0/1:22,19:41:99:524,0,594 0/0:49,0:49:99:0,126,1575 0/0:40,0:40:99:0,111,1403 0/0:44,0:44:99:0,126,1554 0/0:59,0:59:99:0,168,2096 0/0:153,0:153:99:0,409,5045 0/0:46,0:46:99:0,132,1650 0/0:43,0:43:99:0,120,1496 0/0:42,0:42:99:0,123,1544 0/0:72,0:72:99:0,190,2397 0/0:88,0:88:99:0,235,2985 0/0:76,0:76:99:0,202,2486 0/0:43,0:44:99:0,120,1493 0/0:175,0:175:99:0,497,6665 0/0:105,0:105:99:0,295,3914 0/0:146,0:146:99:0,400,5340 0/0:109,0:109:99:0,307,4068 0/0:32,0:32:90.28:0,90,1138 0/0:59,0:59:99:0,175,2155 0/0:38,0:38:99:0,105,1318 0/0:53,0:53:99:0,147,1841 0/0:52,0:52:99:0,141,1795 0/0:68,0:68:99:0,190,2408 0/0:60,0:60:99:0,169,2147 0/0:45,0:45:99:0,129,1604 0/0:50,0:50:99:0,144,1791 0/0:60,0:60:99:0,172,2173 0/0:71,0:71:99:0,184,2240 0/0:58,0:58:99:0,156,1993 0/0:50,0:50:99:0,135,1691 0/0:53,0:53:99:0,147,1810 0/0:51,0:51:99:0,138,1668 0/0:56,0:56:99:0,147,1846 10 28900770 . T G 3806.91 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.986;DP=4839;DS;Dels=0.00;FS=1.862;HRun=0;HaplotypeScore=1.3663;InbreedingCoeff=-0.0244;MQ=59.57;MQ0=0;MQRankSum=0.824;QD=15.41;ReadPosRankSum=-1.242 GT:AD:DP:GQ:PL 0/0:101,0:101:99:0,280,3514 0/0:86,0:86:99:0,253,3129 0/0:79,0:79:99:0,214,2668 0/0:214,0:214:99:0,599,7493 0/0:209,0:209:99:0,599,7625 0/0:212,0:212:99:0,584,7567 0/0:185,0:185:99:0,518,6646 0/1:85,90:175:99:2800,0,2490 0/0:105,0:105:99:0,295,3649 0/0:66,0:66:99:0,184,2283 0/0:62,0:62:99:0,181,2239 0/0:102,0:102:99:0,274,3438 0/0:81,0:81:99:0,214,2681 0/0:87,0:87:99:0,247,3070 0/0:247,0:248:99:0,686,8500 0/0:60,0:60:99:0,175,2145 0/0:93,0:93:99:0,265,3240 0/0:80,0:81:99:0,235,2925 0/0:123,0:123:99:0,334,4247 0/0:118,0:119:99:0,328,4106 0/0:134,0:134:99:0,355,4503 0/0:68,0:68:99:0,190,2316 0/0:188,0:188:99:0,518,6603 0/0:184,0:184:99:0,509,6479 0/0:211,0:211:99:0,593,7536 0/0:175,0:175:99:0,469,6009 0/0:61,0:61:99:0,178,2170 0/0:84,0:85:99:0,247,2993 0/0:78,0:78:99:0,220,2720 0/0:101,0:101:99:0,280,3511 0/0:79,1:80:99:0,200,2789 0/0:122,0:123:99:0,343,4335 0/1:35,37:72:99:1007,0,1014 0/0:80,0:80:99:0,238,2901 0/0:99,0:99:99:0,286,3580 0/0:106,0:106:99:0,295,3677 0/0:95,0:95:99:0,262,3231 0/0:90,0:90:99:0,262,3225 0/0:71,0:71:99:0,205,2528 0/0:82,0:82:99:0,232,2898 0/0:80,0:80:99:0,232,2867 0/0:87,0:87:99:0,244,3073 10 29581479 . C A 279.73 . AC=11;AF=0.131;AN=84;BaseQRankSum=-11.570;DP=2300;Dels=0.00;FS=259.581;HRun=2;HaplotypeScore=2.3597;InbreedingCoeff=-0.1663;MQ=49.20;MQ0=21;MQRankSum=-3.931;QD=0.44;ReadPosRankSum=-8.173 GT:AD:DP:GQ:PL 0/0:46,4:50:86.57:0,87,1217 0/1:42,13:55:91.79:92,0,841 0/1:24,10:34:34.84:35,0,401 0/0:90,7:99:99:0,121,2186 0/0:76,12:88:73.03:0,73,1938 0/0:82,12:94:99:0,116,2125 0/0:54,7:61:60.39:0,60,1222 0/0:59,5:64:85.05:0,85,1366 0/0:41,7:48:78.20:0,78,903 0/0:31,3:34:33.44:0,33,596 0/0:45,7:52:52.87:0,53,1066 0/1:33,10:43:3.54:4,0,887 0/0:30,10:40:43.46:0,43,711 0/0:36,11:47:18.33:0,18,691 0/1:97,30:127:53.62:54,0,1791 0/0:36,9:45:1.13:0,1,723 0/0:45,5:50:53.53:0,54,870 0/0:27,8:35:2.67:1,0,589 0/1:51,10:61:51.33:51,0,995 0/0:59,6:65:44.92:0,45,1314 0/1:54,12:66:37.35:37,0,994 0/0:32,4:36:66.15:0,66,752 0/0:77,11:88:39.01:0,39,1725 0/1:57,7:65:13.47:13,0,1115 0/0:64,5:69:99:0,129,1517 0/0:46,6:52:72.17:0,72,1258 0/0:26,3:29:29.41:0,29,552 0/0:43,5:48:93.21:0,93,1060 0/0:32,5:37:8.32:0,8,770 0/0:27,7:34:17.48:0,17,448 0/0:28,5:33:7.35:0,7,695 0/0:51,3:54:76.57:0,77,1100 0/0:45,4:49:60.49:0,60,905 0/0:49,9:58:75.62:0,76,1156 0/0:35,4:39:45.55:0,46,817 0/0:48,6:54:11.26:0,11,944 0/1:44,15:59:23.26:23,0,842 0/0:54,7:61:79.89:0,80,1319 0/1:45,10:55:38.35:38,0,870 0/0:44,3:47:49.95:0,50,1086 0/1:27,6:33:15.10:15,0,409 0/1:34,8:42:48.92:49,0,723 10 29581493 . A C 12008.56 . AC=19;AF=0.226;AN=84;BaseQRankSum=-6.145;DP=2070;Dels=0.00;FS=7.793;HRun=3;HaplotypeScore=1.2994;InbreedingCoeff=-0.1563;MQ=49.21;MQ0=36;MQRankSum=0.706;QD=13.15;ReadPosRankSum=-4.854 GT:AD:DP:GQ:PL 0/0:53,1:54:99:0,135,1595 0/1:23,19:42:99:418,0,558 0/1:15,13:28:99:367,0,342 0/1:58,41:99:99:993,0,1358 0/0:78,2:80:99:0,175,2061 0/0:81,2:83:99:0,202,2482 0/0:53,0:53:99:0,135,1558 0/1:28,34:62:99:1007,0,474 0/0:32,0:33:57.15:0,57,657 0/0:37,0:37:90.20:0,90,1002 0/1:28,23:51:99:521,0,631 0/1:22,17:39:99:398,0,587 0/1:19,18:37:99:383,0,497 0/0:38,1:39:87.24:0,87,1015 1/1:2,97:99:99:2729,250,0 0/1:18,25:43:99:655,0,349 0/1:27,22:49:99:448,0,712 0/0:29,1:30:78.21:0,78,896 0/0:47,1:48:96.26:0,96,1131 0/0:55,2:57:99:0,135,1576 0/0:57,0:57:99:0,123,1429 0/0:33,0:33:75.23:0,75,905 0/1:45,41:86:99:1015,0,1017 0/0:49,0:49:96.26:0,96,1148 0/0:69,1:70:99:0,159,1911 0/1:19,25:44:99:633,0,482 0/0:35,0:35:81.24:0,81,970 0/0:45,0:45:93.24:0,93,1095 0/0:40,1:41:96.28:0,96,1160 0/1:18,13:31:99:314,0,413 0/1:21,14:35:99:352,0,622 0/1:28,27:55:99:664,0,738 0/0:44,0:44:99:0,102,1204 0/0:52,0:52:99:0,129,1538 0/0:40,1:41:99:0,105,1229 0/1:25,16:41:99:261,0,696 0/0:46,0:46:84.22:0,84,994 0/0:45,1:46:99:0,102,1233 0/0:36,1:37:48.58:0,49,866 0/0:47,0:47:99:0,126,1484 0/1:17,13:30:99:280,0,257 0/1:21,20:41:99:571,0,434 10 29581527 . C T 4549.91 . AC=5;AF=0.060;AN=84;BaseQRankSum=-13.880;DP=2875;Dels=0.00;FS=0.289;HRun=0;HaplotypeScore=1.6288;InbreedingCoeff=-0.0633;MQ=52.73;MQ0=8;MQRankSum=4.086;QD=12.85;ReadPosRankSum=2.824 GT:AD:DP:GQ:PL 0/0:72,0:72:99:0,199,2371 0/0:57,0:58:99:0,147,1758 0/0:50,0:51:99:0,129,1561 0/0:131,0:131:99:0,382,4848 0/0:100,0:100:99:0,280,3594 0/1:38,46:87:99:1288,0,1080 0/1:34,33:67:99:883,0,1028 0/0:72,0:72:99:0,202,2616 0/0:42,0:42:99:0,120,1467 0/0:48,0:49:99:0,144,1740 0/0:54,0:54:99:0,141,1693 0/0:54,0:54:99:0,141,1699 0/1:28,19:47:99:491,0,824 0/0:58,0:58:99:0,162,1946 0/0:176,0:177:99:0,466,5670 0/0:55,0:56:99:0,159,1880 0/0:74,0:74:99:0,199,2395 0/0:54,0:55:99:0,150,1812 0/0:76,0:76:99:0,202,2482 0/1:40,56:96:99:1437,0,1056 0/0:96,0:99:99:0,259,3227 0/0:42,0:43:99:0,111,1351 0/0:121,0:124:99:0,355,4635 0/0:66,0:67:99:0,190,2468 0/0:73,0:73:99:0,205,2644 0/0:56,0:56:99:0,138,1793 0/0:40,0:40:99:0,111,1364 0/1:37,20:57:99:451,0,1036 0/0:52,0:53:99:0,147,1759 0/0:66,0:66:99:0,190,2301 0/0:51,0:51:99:0,135,1657 0/0:83,0:83:99:0,223,2775 0/0:66,0:66:99:0,181,2212 0/0:67,1:68:99:0,136,1969 0/0:57,1:58:99:0,135,1846 0/0:47,0:48:99:0,135,1629 0/0:82,0:84:99:0,196,2369 0/0:53,0:53:99:0,147,1835 0/0:60,0:61:99:0,175,2202 0/0:54,0:54:99:0,147,1758 0/0:45,1:46:88.08:0,88,1416 0/0:49,0:49:99:0,138,1668 10 29752485 . G A 1304.34 . AC=3;AF=0.036;AN=84;BaseQRankSum=3.968;DP=1555;Dels=0.00;FS=2.560;HRun=0;HaplotypeScore=1.0041;InbreedingCoeff=-0.0375;MQ=58.84;MQ0=1;MQRankSum=-1.428;QD=17.63;ReadPosRankSum=1.701 GT:AD:DP:GQ:PL 0/0:24,0:24:66.14:0,66,718 0/0:27,0:27:72.19:0,72,806 0/0:30,0:30:87.23:0,87,1002 0/0:73,0:73:99:0,202,2428 0/0:64,0:65:99:0,166,2080 0/0:37,1:38:70.50:0,70,1264 0/0:45,0:45:99:0,114,1428 0/0:48,2:50:92.37:0,92,1535 0/0:30,0:30:84.21:0,84,957 0/0:25,0:25:60.16:0,60,709 0/0:24,0:24:66.19:0,66,773 0/1:9,13:22:99:405,0,241 0/0:26,0:26:75.17:0,75,826 0/1:8,22:30:99:657,0,195 0/0:105,0:106:99:0,259,3006 0/0:36,0:36:99:0,102,1170 0/0:32,0:33:90.22:0,90,1000 0/0:30,0:30:87.23:0,87,983 0/0:42,0:42:99:0,117,1352 0/0:53,1:54:99:0,150,1732 0/0:36,0:36:93.27:0,93,1117 0/0:29,0:29:75.19:0,75,872 0/0:67,0:67:99:0,184,2216 0/0:35,0:35:90.27:0,90,1114 0/0:43,0:43:99:0,120,1438 0/0:44,0:44:99:0,111,1367 0/0:26,0:26:75.19:0,75,845 0/1:11,11:22:99:318,0,253 0/0:23,0:23:57.15:0,57,660 0/0:27,0:27:78.20:0,78,871 0/0:34,0:34:99:0,102,1157 0/0:47,0:47:99:0,126,1492 0/0:33,0:33:90.23:0,90,1045 0/0:25,0:25:66.14:0,66,734 0/0:39,0:39:99:0,114,1274 0/0:26,0:26:75.19:0,75,833 0/0:40,0:40:99:0,102,1182 0/0:25,0:25:72.20:0,72,818 0/0:38,0:38:99:0,105,1152 0/0:18,1:19:14.15:0,14,494 0/0:34,0:34:90.21:0,90,1017 0/0:33,0:33:90.24:0,90,1038 10 29759225 . A G 10644.99 . AC=13;AF=0.155;AN=84;BaseQRankSum=-18.615;DP=3220;Dels=0.00;FS=34.109;HRun=1;HaplotypeScore=1.8157;InbreedingCoeff=-0.1831;MQ=58.86;MQ0=0;MQRankSum=2.309;QD=11.15;ReadPosRankSum=-4.408 GT:AD:DP:GQ:PL 0/0:68,0:68:99:0,193,2327 0/0:66,0:66:99:0,172,2105 0/0:51,0:51:99:0,138,1697 0/1:66,76:142:99:1960,0,1789 0/0:148,0:148:99:0,403,5060 0/0:98,0:98:99:0,265,3361 0/0:87,0:87:99:0,226,2848 0/0:110,0:111:99:0,307,3833 0/1:27,21:48:99:477,0,812 0/1:24,19:43:99:481,0,667 0/0:52,0:52:99:0,144,1679 0/0:52,0:52:99:0,135,1683 0/0:57,0:57:99:0,159,1971 0/0:59,0:59:99:0,169,2071 0/0:195,0:195:99:0,509,6288 0/0:57,0:57:99:0,169,2037 0/0:81,0:81:99:0,223,2721 0/0:43,0:43:99:0,120,1457 0/0:96,0:97:99:0,265,3255 0/1:57,32:89:99:770,0,1562 0/1:58,35:94:99:842,0,1590 0/1:35,26:61:99:590,0,1041 0/1:84,60:144:99:1611,0,2517 0/0:102,1:103:99:0,223,3322 0/0:114,1:115:99:0,273,3693 0/0:105,0:105:99:0,271,3443 0/1:21,16:37:99:417,0,601 0/0:59,0:59:99:0,166,2011 0/1:26,24:50:99:586,0,797 0/0:66,0:66:99:0,181,2207 0/0:66,0:66:99:0,184,2272 0/0:86,2:88:99:0,247,3050 0/0:88,0:89:99:0,244,2946 0/1:24,22:47:99:581,0,728 0/0:48,0:48:99:0,141,1728 0/1:43,27:70:99:627,0,1243 0/1:37,42:79:99:1017,0,1032 0/0:61,0:61:99:0,163,2027 0/1:26,25:51:99:686,0,809 0/0:50,0:50:99:0,144,1735 0/0:45,0:45:99:0,123,1488 0/0:48,0:48:99:0,138,1655 10 29759401 . G C 212.73 . AC=10;AF=0.119;AN=84;BaseQRankSum=-8.085;DP=1377;Dels=0.00;FS=76.480;HRun=2;HaplotypeScore=0.6483;InbreedingCoeff=-0.1512;MQ=57.26;MQ0=0;MQRankSum=1.720;QD=0.80;ReadPosRankSum=-6.996 GT:AD:DP:GQ:PL 0/1:16,18:34:99:111,0,344 0/1:15,8:23:5.62:6,0,191 0/0:12,7:19:24.07:0,24,290 0/0:42,21:63:72.23:0,72,912 0/0:37,17:54:63.19:0,63,794 0/0:34,22:57:51.16:0,51,658 0/0:17,11:29:24.07:0,24,300 0/0:25,14:39:42.13:0,42,541 0/0:20,7:27:27.08:0,27,329 0/0:14,7:21:21.06:0,21,255 0/0:12,7:19:18.05:0,18,210 0/0:11,7:18:12.04:0,12,149 0/0:11,10:21:21.06:0,21,255 0/1:13,8:21:29.60:30,0,253 0/0:38,23:64:87.25:0,87,1048 0/0:22,11:33:3.59:0,4,345 0/1:23,12:35:22.82:23,0,395 0/1:11,5:16:34.79:35,0,257 0/0:33,10:43:66.18:0,66,800 0/0:42,8:51:69.21:0,69,853 0/0:20,19:40:12.43:0,12,404 0/0:26,8:34:12.50:0,13,445 0/0:29,17:46:48.16:0,48,629 0/0:22,12:34:30.09:0,30,382 0/0:18,17:35:27.07:0,27,340 0/0:20,10:30:30.10:0,30,399 0/1:13,11:24:54.13:54,0,204 0/0:18,8:26:21.07:0,21,260 0/0:14,12:26:1.55:0,2,334 0/0:15,13:28:5.51:0,6,367 0/1:12,15:27:19.18:19,0,302 0/0:46,13:59:60.18:0,60,728 0/0:22,10:32:18.01:0,18,576 0/1:17,9:26:22.84:23,0,333 0/0:21,10:31:14.46:0,14,457 0/0:17,19:36:24.06:0,24,278 0/0:18,4:23:9.43:0,9,381 0/0:20,11:31:30.08:0,30,343 0/0:17,8:25:27.08:0,27,315 0/1:14,10:24:27.13:27,0,283 0/0:12,4:16:24.07:0,24,290 0/1:22,15:37:13.15:13,0,433 10 29775123 . GCTTCATAGA G 218.67 . AC=8;AF=0.095;AN=84;BaseQRankSum=4.583;DP=3315;DS;FS=1719.216;HRun=0;HaplotypeScore=545.1118;InbreedingCoeff=-0.1202;MQ=51.33;MQ0=17;MQRankSum=-0.091;QD=0.38;ReadPosRankSum=-19.674 GT:AD:DP:GQ:PL 0/0:59,0:57:99:0,105,5555 0/0:62,0:60:85.45:0,85,5232 0/0:59,0:56:56.54:0,57,5022 0/0:152,0:149:85.68:0,86,12746 0/1:107,0:104:65.93:66,0,8574 0/0:143,0:138:99:0,103,12760 0/0:119,0:113:90.87:0,91,9156 0/0:99,0:96:99:0,107,8034 0/0:61,0:59:54.23:0,54,5918 0/0:45,0:44:0.72:7,0,3470 0/1:61,0:61:40.21:40,0,4623 0/1:54,0:49:13.30:13,0,4669 0/0:62,0:59:49.40:0,49,4641 0/0:65,0:62:49.69:0,50,5882 0/0:165,39:200:99:0,220,19748 0/0:60,0:59:92.46:0,92,5672 0/0:77,0:77:43.67:0,44,7367 0/0:53,0:51:18.52:0,19,5012 0/1:83,0:79:11.88:12,0,7309 0/0:91,0:88:59.26:0,59,8868 0/1:93,0:93:77.07:77,0,7988 0/0:41,0:40:31.60:0,32,3508 0/0:144,0:138:81.84:0,82,11530 0/0:100,0:95:99:0,175,8867 0/0:115,0:109:99:0,157,10744 0/0:121,0:117:87.71:0,88,10328 0/0:50,0:47:28.22:0,28,4577 0/0:58,0:58:99:0,113,5847 0/0:60,0:60:58.45:0,58,5940 0/0:55,0:53:62.33:0,62,5723 0/0:60,0:58:99:0,116,5858 0/0:83,0:82:87.51:0,88,7017 0/1:60,0:58:29.32:29,0,5142 0/0:62,0:60:99:0,131,6322 0/0:53,0:49:99:0,101,5526 0/0:55,0:55:39.44:0,39,4632 0/0:79,0:77:4.64:0,5,7126 0/0:80,0:75:94.46:0,94,6636 0/1:49,0:48:75.34:75,0,3704 0/0:60,0:59:99:0,147,6932 0/0:60,0:58:24.75:0,25,6032 0/1:61,0:61:29.99:30,0,6450 10 29775124 . C G 321.71 . AC=8;AF=0.095;AN=84;BaseQRankSum=-21.090;DP=3315;DS;Dels=0.01;FS=1367.379;HRun=1;HaplotypeScore=9.2805;InbreedingCoeff=-0.1086;MQ=51.33;MQ0=17;MQRankSum=0.443;QD=0.58;ReadPosRankSum=-16.220 GT:AD:DP:GQ:PL 0/0:43,16:59:94.51:0,95,1355 0/0:47,15:62:91.73:0,92,1396 0/0:40,19:59:99:0,109,1277 0/0:101,51:152:65.56:0,66,3389 0/1:69,38:107:99:102,0,2230 0/0:95,48:143:99:0,113,3115 0/0:78,39:119:99:0,171,2450 0/0:70,29:99:99:0,114,2118 0/0:48,13:61:99:0,123,1460 0/1:34,11:45:34.57:35,0,916 0/1:39,22:61:37.78:38,0,1102 0/0:39,15:54:13.79:0,14,1172 0/0:42,20:62:59.94:0,60,1210 0/0:48,17:65:78.29:0,78,1593 0/0:152,12:165:99:0,404,5363 0/0:42,18:60:83:0,83,1495 0/0:57,20:77:98.31:0,98,1773 0/0:42,11:53:33.87:0,34,1200 0/1:62,21:83:15.85:16,0,1850 0/0:75,16:91:99:0,155,2200 0/1:64,29:93:99:102,0,1817 0/0:27,14:41:37.42:0,37,844 0/0:95,49:144:99:0,112,2973 0/0:78,22:100:99:0,148,2447 0/0:84,31:115:99:0,129,2837 0/0:82,39:121:88.50:0,88,2705 0/0:38,12:50:12.93:0,13,1109 0/0:47,11:58:99:0,100,1549 0/0:47,13:60:76.45:0,76,1480 0/0:45,10:55:53.31:0,53,1303 0/0:47,13:60:99:0,100,1486 0/0:62,21:83:63.79:0,64,1737 0/1:42,18:60:30.24:30,0,1144 0/0:49,13:62:99:0,129,1518 0/0:46,7:53:93.69:0,94,1454 0/0:39,16:55:76.09:0,76,1192 0/0:53,26:79:52.84:0,53,1627 0/0:57,23:80:99:0,124,1840 0/1:29,19:49:71.76:72,0,787 0/0:51,9:60:99:0,141,1725 0/0:45,15:60:7.09:0,7,1458 0/1:46,15:61:48:48,0,1530 10 29813507 . T TG 138.52 . AC=8;AF=0.095;AN=84;BaseQRankSum=-6.032;DP=4563;DS;FS=1032.965;HRun=3;HaplotypeScore=271.2314;InbreedingCoeff=-0.1340;MQ=58.50;MQ0=0;MQRankSum=1.116;QD=0.13;ReadPosRankSum=-16.646 GT:AD:DP:GQ:PL 0/0:104,0:104:69.73:0,70,2035 0/1:87,0:87:14.73:15,0,1606 0/0:65,0:65:14.08:0,14,1487 0/0:204,0:204:99:0,113,3019 0/0:164,0:164:20.79:0,21,2254 0/0:165,0:162:2.79:0,3,2582 0/0:114,0:111:2.78:0,3,1689 0/0:139,0:138:57.77:0,58,2553 0/0:95,0:95:41.62:0,42,1859 0/0:89,0:89:8.49:0,8,1739 0/0:71,0:71:53.94:0,54,1357 0/0:69,0:69:93.57:0,94,1566 0/0:64,0:64:14.88:0,15,1172 0/0:73,0:73:99:0,111,1276 0/1:248,0:248:9.62:10,0,4140 0/0:86,0:86:96.54:0,97,1582 0/0:77,0:77:8.80:0,9,1429 0/0:84,0:83:48.97:0,49,1601 0/1:137,0:137:11.60:12,0,2213 0/0:165,0:165:99:0,189,3281 0/1:166,1:167:14.47:14,0,2483 0/0:78,1:79:97.35:0,97,1595 0/0:188,0:188:65.88:0,66,2925 0/0:126,0:123:99:0,155,2064 0/0:167,0:165:79.71:0,80,2780 0/0:130,0:126:5.03:0,5,2049 0/0:64,0:64:8.87:0,9,921 0/0:77,0:77:28.59:0,29,1446 0/0:65,0:65:99:0,123,1421 0/0:77,0:77:1.17:5,0,1259 0/1:75,0:75:22.55:23,0,1216 0/0:167,1:168:99:0,140,3405 0/0:109,0:108:69.09:0,69,2114 0/0:69,0:69:32.93:0,33,1399 0/1:100,0:100:20.27:20,0,1678 0/0:75,0:75:13.48:0,13,1516 0/1:145,1:146:80.15:80,0,2004 0/0:69,1:70:51.61:0,52,1134 0/0:86,1:87:59.74:0,60,1600 0/1:76,0:76:86.21:86,0,1024 0/0:68,0:68:37.86:0,38,1426 0/0:80,0:80:31.78:0,32,1368 10 29813510 . GACAATTTGTTAAACAA G 90.63 . 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A G 1265.30 . AC=20;AF=0.238;AN=84;BaseQRankSum=-19.952;DP=4313;DS;Dels=0.00;FS=1344.561;HRun=3;HaplotypeScore=4.8241;InbreedingCoeff=-0.3277;MQ=58.95;MQ0=0;MQRankSum=-0.884;QD=0.60;ReadPosRankSum=-18.151 GT:AD:DP:GQ:PL 0/0:67,32:99:65.36:0,65,1906 0/1:55,30:85:81.62:82,0,1535 0/0:52,14:66:5.24:0,5,1590 0/0:96,93:189:47.48:0,47,2898 0/1:79,82:161:13.75:14,0,2419 0/0:94,64:158:99:0,224,2947 0/1:63,50:113:88.17:88,0,1885 0/0:89,44:133:94.44:0,94,2708 0/1:55,35:90:27.03:27,0,1519 0/1:59,27:86:49.27:49,0,1622 0/0:44,25:69:31.70:0,32,1256 0/0:43,18:61:71.75:0,72,1380 0/1:36,21:57:22.03:22,0,947 0/0:40,30:70:79.61:0,80,1156 0/1:151,81:233:42.75:43,0,4436 0/0:45,30:75:69.15:0,69,1363 0/1:45,29:74:53.34:53,0,1289 0/0:51,27:79:16.33:0,16,1412 0/1:78,43:121:99:122,0,2269 0/0:102,53:155:50.63:0,51,2629 0/1:86,50:137:99:107,0,2669 0/0:50,33:83:91.20:0,91,1606 0/1:97,84:181:38.62:39,0,2821 0/0:70,49:119:99:0,121,1913 0/0:93,66:159:18.98:0,19,2777 0/1:63,60:124:99:101,0,1820 0/1:37,25:62:21.02:21,0,974 0/1:51,21:72:99:124,0,1413 0/0:37,19:56:99:0,102,1161 0/1:42,35:77:63.17:63,0,1199 0/1:43,29:72:47.85:48,0,1262 0/0:108,58:166:99:0,172,2921 0/0:71,39:110:65.01:0,65,1947 0/0:43,22:65:2.37:0,2,1243 0/1:61,35:96:99:133,0,1687 0/1:54,18:72:15.44:15,0,1432 0/1:74,47:121:99:149,0,2041 0/0:34,27:62:33.38:0,33,1020 0/0:57,25:83:72.99:0,73,1669 0/1:41,31:72:99:134,0,1135 0/0:46,20:66:70.70:0,71,1393 0/0:43,31:74:6.51:0,7,1177 10 29843833 . C T 15301.03 . AC=21;AF=0.250;AN=84;BaseQRankSum=-20.526;DP=2394;Dels=0.00;FS=0.975;HRun=1;HaplotypeScore=1.0589;InbreedingCoeff=0.1746;MQ=59.19;MQ0=0;MQRankSum=0.295;QD=17.88;ReadPosRankSum=-1.473 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,129,1638 0/1:19,18:37:99:514,0,577 1/1:0,32:32:96.30:1163,96,0 0/0:102,0:102:99:0,259,3490 0/0:117,0:117:99:0,301,4076 0/1:38,34:72:99:1031,0,1156 0/1:33,31:65:99:895,0,1050 0/1:42,25:67:99:633,0,1265 0/0:43,0:43:99:0,108,1416 0/0:43,0:43:99:0,120,1509 0/1:30,18:48:99:509,0,911 0/0:30,0:30:84.25:0,84,1037 0/1:23,17:40:99:480,0,682 0/0:43,0:43:99:0,120,1534 0/0:170,0:170:99:0,433,5603 0/0:44,0:44:99:0,129,1646 0/0:42,1:43:79.10:0,79,1386 0/1:28,24:52:99:696,0,825 1/1:0,83:83:99:2862,232,0 0/1:44,28:72:99:736,0,1365 0/0:75,0:75:99:0,193,2363 0/0:43,0:43:99:0,105,1337 0/0:111,0:111:99:0,289,3900 0/0:72,0:72:99:0,187,2526 0/0:78,0:78:99:0,208,2787 0/0:75,0:75:99:0,196,2649 0/0:38,0:38:99:0,105,1332 0/0:41,0:41:99:0,117,1487 0/0:33,0:33:96.30:0,96,1212 0/0:39,1:40:81.70:0,82,1312 0/0:41,0:41:99:0,120,1526 0/0:75,0:75:99:0,208,2618 0/1:18,24:42:99:673,0,496 0/1:18,18:36:99:491,0,591 0/0:39,0:39:99:0,117,1483 1/1:0,39:39:99:1307,108,0 1/1:0,63:63:99:2153,178,0 0/1:16,21:37:99:566,0,468 0/1:22,11:34:99:277,0,627 0/0:54,0:54:99:0,147,1893 0/1:24,13:37:99:317,0,680 0/0:42,0:42:99:0,117,1489 10 30901756 . G A 33059.87 . AC=36;AF=0.429;AN=84;BaseQRankSum=-15.775;DP=2666;Dels=0.00;FS=24.835;HRun=1;HaplotypeScore=0.6991;InbreedingCoeff=-0.0694;MQ=58.17;MQ0=1;MQRankSum=3.286;QD=19.05;ReadPosRankSum=-1.475 GT:AD:DP:GQ:PL 0/1:19,20:39:99:622,0,542 1/1:0,61:61:99:2054,163,0 0/1:20,18:38:99:545,0,646 0/0:110,0:110:99:0,283,3842 0/0:98,0:98:99:0,268,3697 1/1:0,79:79:99:2862,217,0 0/1:44,42:86:99:1302,0,1343 1/1:1,71:72:99:2449,158,0 0/1:31,24:55:99:709,0,1009 1/1:1,34:35:63.18:1171,63,0 0/0:70,0:70:99:0,187,2384 0/1:21,18:39:99:542,0,606 0/1:28,17:45:99:450,0,880 0/0:52,0:52:99:0,144,1831 1/1:0,160:160:99:5414,433,0 0/1:17,19:36:99:547,0,551 0/1:36,24:60:99:712,0,1072 0/1:30,17:47:99:468,0,984 0/1:32,21:53:99:608,0,1012 0/1:37,27:64:99:733,0,1075 0/0:69,0:69:99:0,175,2227 0/0:50,0:50:99:0,132,1699 0/0:118,0:118:99:0,331,4529 0/1:43,32:75:99:962,0,1435 0/1:41,41:82:99:1273,0,1350 0/1:48,45:93:99:1278,0,1571 0/1:24,19:43:99:534,0,750 0/0:65,0:65:99:0,178,2263 1/1:0,39:39:99:1364,108,0 0/1:29,24:53:99:706,0,821 0/1:42,26:68:99:744,0,1390 0/1:26,27:53:99:744,0,687 0/1:25,28:53:99:809,0,697 0/0:64,0:64:99:0,184,2333 0/0:56,0:56:99:0,156,1974 0/0:62,0:62:99:0,172,2171 0/0:54,0:54:99:0,141,1786 0/0:63,0:63:99:0,175,2213 0/1:27,28:55:99:786,0,856 0/1:26,24:50:99:693,0,793 1/1:0,45:45:99:1554,123,0 0/1:40,17:57:99:425,0,1233 10 30901825 . C T 1073.68 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.119;DP=3080;Dels=0.00;FS=1.379;HRun=0;HaplotypeScore=0.9350;InbreedingCoeff=-0.0120;MQ=57.55;MQ0=0;MQRankSum=1.196;QD=11.67;ReadPosRankSum=-0.778 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,111,1416 0/0:55,0:56:99:0,156,1984 0/0:46,0:46:99:0,126,1625 0/0:105,0:105:99:0,277,3784 0/0:99,0:99:99:0,274,3762 0/0:117,0:117:99:0,286,3967 0/0:85,0:85:99:0,226,3083 0/1:50,42:92:99:1120,0,1444 0/0:59,0:59:99:0,163,2055 0/0:47,0:47:99:0,126,1633 0/0:61,0:61:99:0,178,2255 0/0:62,0:62:99:0,175,2229 0/0:64,0:64:99:0,178,2250 0/0:61,0:61:99:0,169,2167 0/0:208,1:209:99:0,495,6810 0/0:43,0:43:99:0,120,1517 0/0:63,0:63:99:0,175,2254 0/0:55,0:55:99:0,150,1943 0/0:65,0:66:99:0,166,2124 0/0:67,0:67:99:0,166,2138 0/0:88,0:88:99:0,220,2816 0/0:62,0:62:99:0,162,2094 0/0:130,0:130:99:0,337,4679 0/0:100,0:100:99:0,250,3440 0/0:91,0:91:99:0,247,3359 0/0:115,0:115:99:0,307,4228 0/0:43,0:43:99:0,126,1618 0/0:71,0:71:99:0,178,2304 0/0:55,0:55:99:0,157,2010 0/0:56,0:56:99:0,162,2022 0/0:68,0:68:99:0,193,2477 0/0:89,0:89:99:0,217,2828 0/0:50,0:50:99:0,141,1813 0/0:75,0:75:99:0,202,2578 0/0:69,0:69:99:0,181,2333 0/0:60,0:60:99:0,169,2183 0/0:78,0:78:99:0,205,2625 0/0:75,0:75:99:0,202,2608 0/0:62,0:62:99:0,175,2197 0/0:50,0:50:99:0,129,1671 0/0:45,0:45:99:0,129,1629 0/0:50,0:50:99:0,132,1721 10 30918549 . G C 2415.68 . AC=23;AF=0.274;AN=84;BaseQRankSum=10.667;DP=2045;Dels=0.00;FS=163.187;HRun=2;HaplotypeScore=1.0387;InbreedingCoeff=-0.3736;MQ=48.82;MQ0=18;MQRankSum=-11.454;QD=2.03;ReadPosRankSum=-3.757 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,114,1292 0/0:34,0:34:90.18:0,90,979 0/1:24,7:31:99:99,0,649 0/1:72,16:88:99:216,0,1972 0/0:75,1:76:99:0,162,2317 0/1:52,8:60:99:114,0,1400 0/1:35,9:44:99:140,0,1034 0/1:48,12:60:99:128,0,1284 0/1:33,5:38:45:45,0,892 0/0:39,3:42:19.97:0,20,1101 0/0:37,0:37:99:0,108,1136 0/0:52,2:54:72.31:0,72,1464 0/1:34,7:41:54.63:55,0,901 0/0:28,0:28:81.20:0,81,899 0/1:108,21:129:99:292,0,2758 0/1:39,7:46:59.65:60,0,1080 0/1:37,5:42:3.23:3,0,991 0/0:36,3:39:30.07:0,30,971 0/1:58,9:68:52.85:53,0,1494 0/1:47,8:55:99:103,0,1238 0/0:59,0:59:99:0,144,1682 0/0:38,0:38:99:0,108,1164 0/0:84,8:92:30.66:0,31,2412 0/0:30,0:30:84.21:0,84,1000 0/0:39,0:39:90.22:0,90,1073 0/0:41,5:46:10.41:0,10,1149 0/1:31,5:36:85.38:85,0,802 0/0:48,6:54:36.98:0,37,1265 0/1:20,4:24:54.34:54,0,560 0/0:38,2:40:28.97:0,29,1033 0/0:38,1:39:90.21:0,90,1010 0/1:55,11:67:99:131,0,1471 0/1:44,7:51:30.09:30,0,1169 0/1:24,13:37:99:278,0,658 0/1:29,4:33:41.92:42,0,758 0/1:44,15:59:99:293,0,1135 0/1:50,7:58:57.88:58,0,1085 0/1:26,5:31:96.22:96,0,656 0/0:34,0:34:93.21:0,93,1010 0/1:39,9:48:94.54:95,0,1016 0/0:26,3:29:11.15:0,11,722 0/1:38,7:45:99:121,0,1082 10 30918597 . T C 1866.69 . AC=23;AF=0.274;AN=84;BaseQRankSum=10.831;DP=2018;Dels=0.00;FS=434.386;HRun=1;HaplotypeScore=1.2382;InbreedingCoeff=-0.3843;MQ=38.09;MQ0=118;MQRankSum=-7.914;QD=1.76;ReadPosRankSum=3.793 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1417 0/1:31,6:37:59.48:59,0,637 0/1:27,3:30:28.11:28,0,669 0/1:61,12:73:99:200,0,1817 0/0:62,4:66:99:0,111,2062 0/1:40,13:53:99:183,0,1241 0/0:46,4:50:21.67:0,22,1270 0/1:47,8:55:99:116,0,1343 0/0:33,3:36:32.36:0,32,984 0/1:41,5:46:13.42:13,0,1152 0/0:35,0:35:90.18:0,90,971 0/0:35,3:38:42.18:0,42,1071 0/1:37,8:45:99:114,0,981 0/0:35,0:35:84.25:0,84,1016 0/0:114,12:126:1.11:0,1,3170 0/1:26,7:33:76.95:77,0,751 0/1:44,5:49:28.83:29,0,1287 0/1:38,4:42:1.05:1,0,957 0/1:52,6:58:16.79:17,0,1416 0/0:59,5:64:25.68:0,26,1612 0/0:61,0:61:99:0,156,1843 0/0:31,0:31:81.18:0,81,911 0/0:80,8:88:0.62:0,1,2358 0/0:33,0:33:75.19:0,75,881 0/0:44,0:44:99:0,105,1294 0/0:46,1:48:74.84:0,75,1213 0/1:30,5:35:40.51:41,0,835 0/1:41,5:46:10.58:11,0,1145 0/1:30,5:36:53.04:53,0,782 0/0:35,2:37:32.38:0,32,1032 0/0:38,2:40:65.82:0,66,1081 0/1:73,11:84:72.88:73,0,1853 0/1:44,10:54:31.83:32,0,1248 0/1:25,12:37:99:238,0,690 0/1:40,5:45:22.43:22,0,1050 0/1:40,9:49:99:171,0,1140 0/0:39,2:41:56.78:0,57,953 0/1:30,4:34:52.52:53,0,736 0/0:35,0:35:90.25:0,90,1079 0/1:37,9:46:99:122,0,931 0/1:25,8:33:99:188,0,519 0/1:31,10:41:99:195,0,863 10 32120678 . C T 6281.59 . AC=18;AF=0.214;AN=84;BaseQRankSum=-15.154;DP=1579;Dels=0.00;FS=0.000;HRun=5;HaplotypeScore=0.6447;InbreedingCoeff=-0.2727;MQ=59.28;MQ0=0;MQRankSum=1.268;QD=11.34;ReadPosRankSum=0.773 GT:AD:DP:GQ:PL 0/0:38,0:39:99:0,105,1329 0/0:45,0:45:99:0,111,1449 0/0:30,0:30:84.27:0,84,1085 0/1:6,10:16:99:323,0,186 0/1:10,9:19:99:257,0,329 0/1:13,6:19:99:175,0,424 0/0:23,0:23:57.19:0,57,800 0/1:9,11:20:99:320,0,277 0/1:15,22:37:99:602,0,437 0/1:18,16:34:99:461,0,531 0/1:15,7:22:99:194,0,477 0/0:50,0:50:99:0,141,1814 0/0:32,0:32:84.27:0,84,1073 0/0:40,0:40:99:0,102,1332 0/1:55,38:93:99:945,0,1573 0/1:8,12:20:99:305,0,188 0/1:12,10:22:99:261,0,314 0/0:53,0:53:99:0,144,1847 0/1:36,10:46:99:201,0,1041 0/1:20,21:41:99:494,0,597 0/0:58,0:58:99:0,147,1912 0/0:35,0:35:96.30:0,96,1232 0/1:15,5:20:99:134,0,422 0/1:11,4:15:77.65:78,0,368 0/1:12,5:17:99:148,0,323 0/0:27,0:27:69.21:0,69,922 0/0:26,0:26:72.23:0,72,912 0/0:48,0:48:99:0,126,1614 0/0:30,0:30:78.23:0,78,985 0/0:26,0:26:72.23:0,72,923 0/0:51,0:51:99:0,144,1870 0/0:69,0:69:99:0,163,2161 0/1:14,20:34:99:533,0,380 0/0:40,0:40:99:0,105,1363 0/0:42,0:42:99:0,111,1427 0/1:27,16:43:99:439,0,847 0/0:47,0:47:99:0,108,1424 0/1:19,16:35:99:413,0,516 0/0:55,0:55:99:0,144,1873 0/0:45,0:45:99:0,117,1526 0/0:52,0:52:99:0,129,1669 0/0:62,0:62:99:0,165,2120 10 32141460 . T C 29033.83 . AC=18;AF=0.214;AN=84;BaseQRankSum=27.694;DP=4312;DS;Dels=0.00;FS=0.261;HRun=0;HaplotypeScore=1.0692;InbreedingCoeff=-0.2727;MQ=59.43;MQ0=0;MQRankSum=-0.675;QD=12.96;ReadPosRankSum=2.263 GT:AD:DP:GQ:PL 0/0:104,0:104:99:0,271,3362 0/0:102,0:102:99:0,256,3187 0/0:71,0:71:99:0,190,2329 0/1:98,103:201:99:3063,0,2551 0/1:99,62:161:99:1876,0,2842 0/1:109,63:172:99:1721,0,3036 0/0:158,0:158:99:0,385,5053 0/1:74,80:154:99:2189,0,1974 0/1:41,44:85:99:1197,0,1103 0/1:49,45:94:99:1249,0,1308 0/1:39,22:61:99:565,0,1114 0/0:81,0:81:99:0,202,2531 0/0:80,0:80:99:0,220,2657 0/0:85,0:85:99:0,226,2817 0/1:127,122:249:99:3388,0,3336 0/1:33,23:56:99:587,0,937 0/1:40,43:83:99:1170,0,1119 0/0:103,0:103:99:0,259,3246 0/1:53,40:93:99:1119,0,1453 0/1:70,51:121:99:1368,0,1851 0/0:90,0:90:99:0,229,2869 0/0:65,0:65:99:0,162,2031 0/1:100,98:198:99:2852,0,2676 0/1:73,65:138:99:1798,0,1987 0/1:88,64:152:99:1939,0,2389 0/0:162,3:165:99:0,276,4873 0/0:65,0:65:99:0,166,2092 0/0:66,0:66:99:0,181,2222 0/0:78,0:78:99:0,208,2565 0/0:54,0:54:99:0,144,1775 0/0:57,0:58:99:0,169,2037 0/0:95,0:95:99:0,235,3000 0/1:33,34:67:99:876,0,890 0/0:73,0:73:99:0,193,2395 0/0:72,0:72:99:0,187,2269 0/1:33,34:67:99:932,0,947 0/0:83,0:83:99:0,220,2747 0/1:50,38:88:99:1143,0,1352 0/0:62,0:62:99:0,181,2189 0/0:104,0:104:99:0,280,3467 0/0:75,1:76:99:0,169,2440 0/0:82,0:82:99:0,214,2674 10 32323645 . C A 152.93 . AC=4;AF=0.048;AN=84;BaseQRankSum=-15.780;DP=1957;Dels=0.01;FS=488.951;HRun=2;HaplotypeScore=3.5581;InbreedingCoeff=-0.0781;MQ=58.93;MQ0=0;MQRankSum=-0.702;QD=1.06;ReadPosRankSum=-9.353 GT:AD:DP:GQ:PL 0/0:25,11:36:15.11:0,15,793 0/0:30,8:38:78.16:0,78,946 0/0:30,7:37:60.18:0,60,762 0/0:49,16:65:99:0,117,1530 0/0:47,20:67:78.82:0,79,1553 0/0:57,21:78:99:0,104,1636 0/0:46,15:61:82.64:0,83,1344 0/0:55,20:75:99:0,103,1648 0/0:32,13:46:1.99:2,0,854 0/0:31,8:39:77.70:0,78,914 0/0:22,18:40:60.14:0,60,711 0/1:21,10:31:69.26:69,0,514 0/0:23,11:34:6:0,6,670 0/0:22,7:29:57.17:0,57,713 0/0:87,52:139:82.67:0,83,2344 0/0:21,11:32:23.45:0,23,537 0/0:29,17:46:32.61:0,33,737 0/0:28,16:44:14.79:0,15,846 0/0:27,15:42:42.11:0,42,854 0/0:52,10:62:99:0,114,1453 0/0:30,3:34:78.22:0,78,990 0/0:25,6:31:69.20:0,69,852 0/0:47,31:78:82.72:0,83,1549 0/0:35,18:53:51.22:0,51,908 0/0:40,14:54:35.10:0,35,1105 0/0:50,19:69:99:0,123,1612 0/0:19,8:27:45.13:0,45,562 0/0:27,9:36:75.03:0,75,927 0/0:23,5:28:26.58:0,27,654 0/0:26,12:38:16.80:0,17,656 0/1:18,13:31:88.52:89,0,481 0/0:41,7:49:41.01:0,41,1055 0/0:23,8:31:48.10:0,48,558 0/0:26,13:39:0.82:7,0,580 0/1:27,10:37:15.70:16,0,641 0/0:32,8:40:29.04:0,29,949 0/0:24,4:28:60.16:0,60,730 0/1:22,23:45:62.24:62,0,507 0/0:26,11:37:39.58:0,40,808 0/0:28,14:42:21.47:0,21,836 0/0:19,8:27:2.68:0,3,387 0/0:31,14:45:69.20:0,69,854 10 32323645 . C CA 130.57 . AC=6;AF=0.071;AN=84;BaseQRankSum=10.885;DP=2068;FS=584.937;HRun=2;HaplotypeScore=185.3824;InbreedingCoeff=-0.0860;MQ=58.68;MQ0=0;MQRankSum=0.659;QD=0.37;ReadPosRankSum=-14.811 GT:AD:DP:GQ:PL 0/0:38,0:38:24.41:0,24,839 0/0:38,0:38:49.95:0,50,854 0/0:39,0:39:69.68:0,70,854 0/0:66,0:66:82.44:0,82,1311 0/0:72,0:72:55.39:0,55,1497 0/0:83,0:80:99:0,112,1439 0/0:63,0:62:84.55:0,85,1138 0/0:84,0:83:75.02:0,75,1447 0/1:48,0:48:34.62:35,0,757 0/0:41,0:41:83.66:0,84,964 0/0:41,1:42:50.72:0,51,711 0/1:34,0:34:99:99,0,523 0/0:35,0:35:23.61:0,24,686 0/0:29,0:29:51.15:0,51,627 0/1:150,0:150:26.50:26,0,2292 0/0:32,0:32:37.32:0,37,547 0/0:50,0:50:54.76:0,55,794 0/0:46,0:46:24.15:0,24,872 0/0:49,1:50:9.77:0,10,811 0/0:62,0:62:99:0,137,1694 0/0:53,0:53:16.15:0,16,890 0/0:34,0:34:50.51:0,51,835 0/0:80,0:80:48.54:0,49,1362 0/0:54,0:54:49.65:0,50,981 0/0:54,0:52:77.75:0,78,1111 0/0:72,0:70:99:0,115,1531 0/0:27,0:27:40.29:0,40,550 0/0:37,0:37:59.35:0,59,932 0/0:28,0:28:41.69:0,42,639 0/0:37,0:36:47.34:0,47,659 0/1:33,0:33:43.23:43,0,546 0/0:49,0:49:88.94:0,89,1349 0/0:32,0:32:54.13:0,54,647 0/0:42,0:42:2.71:1,0,526 0/0:39,0:39:35.46:0,35,758 0/0:44,0:44:48.54:0,49,1075 0/1:26,16:42:17.29:17,0,690 0/1:46,0:46:23.08:23,0,493 0/0:41,0:41:52.06:0,52,833 0/0:47,0:47:30.24:0,30,903 0/0:30,0:30:20.22:0,20,439 0/0:45,0:45:69.67:0,70,845 10 32580205 . C T 3882.77 . AC=5;AF=0.060;AN=84;BaseQRankSum=-15.854;DP=3160;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.3120;InbreedingCoeff=-0.0633;MQ=59.34;MQ0=0;MQRankSum=1.029;QD=12.25;ReadPosRankSum=-3.738 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,159,2008 0/0:71,0:71:99:0,190,2446 0/0:85,0:85:99:0,214,2773 0/0:98,0:98:99:0,256,3517 0/0:85,0:85:99:0,217,2977 0/0:116,0:116:99:0,283,3891 0/0:77,0:77:99:0,202,2772 0/0:84,0:84:99:0,220,3020 0/0:52,0:52:99:0,144,1861 0/0:59,0:59:99:0,165,2055 0/0:60,0:60:99:0,153,1960 0/0:71,0:71:99:0,199,2535 0/1:33,29:62:99:830,0,940 0/0:62,0:62:99:0,163,2092 0/0:195,0:195:99:0,536,6876 0/0:45,0:45:99:0,129,1624 0/0:58,1:59:99:0,126,1979 0/0:69,0:69:99:0,193,2457 0/0:65,0:65:99:0,184,2343 0/0:95,0:95:99:0,256,3289 0/0:87,0:87:99:0,244,3117 0/0:45,0:45:99:0,126,1621 0/0:95,0:95:99:0,253,3509 0/0:81,0:81:99:0,202,2799 0/0:79,0:79:99:0,202,2801 0/0:69,1:71:99:0,150,2490 0/1:26,21:47:99:590,0,792 0/1:37,39:76:99:1041,0,1180 0/0:49,0:49:99:0,141,1802 0/0:74,0:74:99:0,196,2532 0/0:64,0:64:99:0,175,2230 0/0:119,0:119:99:0,304,4003 0/0:78,0:78:99:0,190,2442 0/0:53,0:53:99:0,150,1917 0/0:68,0:68:99:0,181,2323 0/1:44,34:78:99:775,0,1267 0/0:78,0:78:99:0,217,2765 0/0:78,0:78:99:0,199,2570 0/1:29,25:54:99:647,0,912 0/0:78,0:78:99:0,220,2822 0/0:62,0:62:99:0,156,2009 0/0:78,0:78:99:0,217,2798 10 32745248 . A C 2991.30 . AC=5;AF=0.060;AN=84;BaseQRankSum=11.407;DP=2350;Dels=0.00;FS=2.591;HRun=0;HaplotypeScore=0.6051;InbreedingCoeff=-0.0633;MQ=59.46;MQ0=0;MQRankSum=-0.157;QD=13.91;ReadPosRankSum=-0.440 GT:AD:DP:GQ:PL 0/1:18,19:37:99:620,0,483 0/0:54,0:54:99:0,156,1901 0/0:40,0:40:96.30:0,96,1223 0/0:103,0:103:99:0,256,3256 0/0:70,0:70:99:0,193,2408 0/0:81,0:81:99:0,223,2845 0/0:73,0:73:99:0,187,2410 0/0:62,0:62:99:0,169,2115 0/0:54,0:54:99:0,144,1751 0/0:24,0:24:72.22:0,72,865 0/0:41,0:41:99:0,111,1365 0/0:41,0:41:99:0,117,1401 0/0:51,0:51:99:0,144,1768 0/0:56,0:56:99:0,150,1862 0/0:179,0:179:99:0,454,5611 0/1:14,8:22:99:244,0,421 0/0:40,0:40:99:0,114,1398 0/1:25,19:44:99:606,0,693 0/0:76,0:76:99:0,208,2556 0/1:33,33:66:99:985,0,939 0/0:66,0:66:99:0,184,2222 0/1:24,22:46:99:634,0,672 0/0:91,0:91:99:0,238,3012 0/0:67,0:67:99:0,169,2163 0/0:90,0:90:99:0,226,2888 0/0:77,0:77:99:0,196,2477 0/0:32,0:32:87.27:0,87,1072 0/0:53,0:53:99:0,150,1820 0/0:31,0:31:87.26:0,87,1055 0/0:49,1:50:99:0,126,1571 0/0:38,0:38:99:0,105,1286 0/0:57,0:57:99:0,147,1815 0/0:47,0:47:99:0,123,1528 0/0:38,0:38:99:0,111,1349 0/0:43,0:43:99:0,117,1450 0/0:37,0:37:99:0,105,1271 0/0:57,0:57:99:0,150,1873 0/0:33,0:33:93.28:0,93,1128 0/0:41,0:41:99:0,117,1419 0/0:54,0:54:99:0,144,1796 0/0:38,0:38:99:0,102,1261 0/0:50,0:50:99:0,141,1741 10 32745262 . T C 3635.04 . AC=7;AF=0.083;AN=84;BaseQRankSum=-9.885;DP=1951;Dels=0.00;FS=6.370;HRun=0;HaplotypeScore=0.3785;InbreedingCoeff=-0.0909;MQ=59.43;MQ0=0;MQRankSum=-0.264;QD=12.08;ReadPosRankSum=-0.847 GT:AD:DP:GQ:PL 0/0:29,0:29:81.25:0,81,1006 0/0:43,0:43:99:0,123,1508 0/0:30,0:30:78.23:0,78,956 0/0:99,0:99:99:0,256,3238 0/0:64,0:64:99:0,184,2304 0/1:29,37:66:99:1156,0,797 0/0:62,0:62:99:0,163,2079 0/1:29,21:50:99:549,0,880 0/0:46,0:46:99:0,126,1574 0/0:25,0:25:72.22:0,72,874 0/0:30,0:30:87.26:0,87,1062 0/0:39,0:39:99:0,111,1359 0/0:37,0:37:99:0,105,1293 0/1:26,24:50:99:592,0,733 0/0:139,0:139:99:0,367,4503 0/0:20,0:20:57.18:0,57,706 0/0:35,0:35:99:0,105,1277 0/0:37,0:37:99:0,108,1322 0/0:64,0:64:99:0,166,2050 0/0:58,0:58:99:0,163,2025 0/0:49,0:49:99:0,132,1609 0/0:36,0:36:99:0,99,1220 0/0:72,0:72:99:0,214,2669 0/0:52,0:52:99:0,141,1769 0/0:71,0:71:99:0,184,2305 0/0:55,0:55:99:0,153,1900 0/0:30,0:30:84.25:0,84,1027 0/0:43,0:43:99:0,120,1472 0/1:15,13:28:99:354,0,436 0/1:29,20:49:99:457,0,840 0/1:17,10:27:99:263,0,460 0/0:49,0:49:99:0,138,1686 0/0:40,0:40:99:0,108,1317 0/0:32,0:32:93.29:0,93,1150 0/0:35,0:35:99:0,99,1236 0/0:30,0:30:84.27:0,84,1056 0/0:51,0:51:99:0,141,1745 0/1:20,11:31:99:263,0,614 0/0:38,0:38:99:0,102,1274 0/0:40,0:40:99:0,114,1407 0/0:29,0:29:84.26:0,84,1010 0/0:40,1:41:76.99:0,77,1314 10 32856746 . A C 3763.70 . AC=5;AF=0.060;AN=84;BaseQRankSum=1.099;DP=2740;Dels=0.00;FS=1.016;HRun=0;HaplotypeScore=0.8016;InbreedingCoeff=-0.0633;MQ=59.12;MQ0=0;MQRankSum=-0.347;QD=13.84;ReadPosRankSum=-0.458 GT:AD:DP:GQ:PL 0/1:36,30:66:99:832,0,1109 0/0:47,0:47:99:0,129,1612 0/0:43,1:44:89.03:0,89,1469 0/0:95,0:95:99:0,256,3287 0/0:101,0:101:99:0,259,3356 0/0:75,0:75:99:0,205,2711 0/0:71,0:71:99:0,175,2299 0/0:82,0:82:99:0,211,2758 0/0:43,0:43:99:0,117,1473 0/0:58,0:58:99:0,153,1924 0/0:56,0:56:99:0,156,1907 0/0:73,0:73:99:0,199,2513 0/0:65,0:65:99:0,178,2205 0/0:48,0:48:99:0,135,1671 0/0:196,0:196:99:0,509,6439 0/1:18,22:40:99:675,0,533 0/0:56,0:56:99:0,159,1982 0/1:28,24:52:99:654,0,837 0/0:73,0:73:99:0,193,2451 0/1:31,34:65:99:988,0,907 0/0:73,0:73:99:0,190,2405 0/1:24,25:49:99:615,0,703 0/0:124,0:124:99:0,307,4032 0/0:88,0:88:99:0,226,2979 0/0:92,0:92:99:0,256,3291 0/0:79,0:79:99:0,202,2619 0/0:36,1:37:93.30:0,93,1186 0/0:49,0:49:99:0,132,1646 0/0:37,0:37:99:0,108,1335 0/0:59,0:59:99:0,156,1982 0/0:46,0:46:99:0,135,1693 0/0:62,0:62:99:0,156,1995 0/0:58,0:58:99:0,144,1835 0/0:55,0:55:99:0,153,1936 0/0:55,0:55:99:0,156,1942 0/0:53,0:53:99:0,147,1837 0/0:48,0:48:99:0,141,1763 0/0:53,0:53:99:0,147,1847 0/0:56,0:56:99:0,166,2032 0/0:66,0:66:99:0,181,2263 0/0:46,0:46:99:0,129,1605 0/0:49,0:49:99:0,141,1757 10 33017895 . CAAAT C 2236.44 . 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G C 56206.36 . 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A G 1169.86 . 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TAA T 2642.65 . 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G T 92786.81 . 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G A 2008.37 . 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G A 16589.15 . 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C T 3067.10 . 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C G 18.96 . AC=2;AF=0.024;AN=84;BaseQRankSum=-20.418;DP=2474;Dels=0.00;FS=1320.098;HRun=2;HaplotypeScore=1.1235;InbreedingCoeff=-0.0642;MQ=59.25;MQ0=0;MQRankSum=-2.305;QD=0.16;ReadPosRankSum=-18.583 GT:AD:DP:GQ:PL 0/0:30,7:37:58.53:0,59,959 0/0:42,10:52:99:0,123,1486 0/0:45,8:53:82:0,82,1306 0/0:72,16:88:99:0,106,2382 0/0:69,19:88:99:0,120,2400 0/0:50,7:57:87.16:0,87,1791 0/0:61,13:74:99:0,167,2165 0/0:50,8:58:99:0,106,1692 0/0:41,8:49:99:0,108,1341 0/0:38,8:46:2.91:0,3,917 0/0:42,13:55:11.83:0,12,1241 0/0:40,9:49:57.03:0,57,1355 0/0:26,10:36:32.09:0,32,872 0/0:38,11:49:33.12:0,33,950 0/0:123,32:155:99:0,136,3856 0/0:31,11:42:0.84:7,0,821 0/0:43,10:53:32.86:0,33,1391 0/0:38,7:45:49.40:0,49,1216 0/0:55,9:64:9.59:0,10,1584 0/0:58,12:70:99:0,123,1784 0/0:62,17:79:50.91:0,51,1871 0/0:34,13:47:65.53:0,66,1017 0/0:59,28:87:56.58:0,57,2013 0/0:55,11:66:58.50:0,59,1883 0/0:53,8:61:99:0,105,1888 0/0:39,12:51:49.52:0,50,1337 0/0:41,10:51:0.38:10,0,1252 0/0:40,11:51:29.50:0,29,1284 0/0:37,6:43:75.42:0,75,1158 0/0:41,12:53:99:0,101,1201 0/0:48,15:63:67.20:0,67,1517 0/0:59,14:73:99:0,108,1808 0/0:37,13:50:25.38:0,25,1071 0/0:40,9:49:71.71:0,72,1194 0/1:36,15:51:57.74:58,0,933 0/1:52,17:69:17.48:17,0,1478 0/0:52,16:68:85.52:0,86,1634 0/0:53,14:67:99:0,117,1662 0/0:39,5:44:74.57:0,75,1120 0/0:28,8:36:27.48:0,27,894 0/0:37,10:47:22.05:0,22,946 0/0:36,12:48:0.79:7,0,1044 10 33552695 . C T 12377.24 . AC=9;AF=0.107;AN=84;BaseQRankSum=-13.480;DP=5467;DS;Dels=0.00;FS=3.028;HRun=0;HaplotypeScore=1.7399;InbreedingCoeff=-0.1200;MQ=59.58;MQ0=0;MQRankSum=-1.521;QD=12.71;ReadPosRankSum=-0.588 GT:AD:DP:GQ:PL 0/0:90,0:90:99:0,259,3122 0/1:55,37:92:99:969,0,1559 0/1:47,39:86:99:1033,0,1295 0/0:250,0:250:99:0,695,9146 0/1:125,125:250:99:3588,0,3961 0/0:250,0:250:99:0,698,9191 0/0:250,0:250:99:0,701,9260 0/0:250,0:250:99:0,704,9271 0/0:96,0:96:99:0,244,3042 0/0:90,0:90:99:0,250,3066 0/0:95,0:95:99:0,262,3141 0/1:46,43:89:99:1274,0,1351 0/0:90,0:90:99:0,253,3002 0/1:53,38:91:99:976,0,1553 0/0:249,0:250:99:0,662,8031 0/0:78,0:78:99:0,220,2594 0/1:56,40:96:99:1098,0,1600 0/0:74,0:74:99:0,202,2464 0/0:155,0:158:99:0,421,5162 0/0:123,0:123:99:0,304,3767 0/0:138,0:139:99:0,376,4567 0/0:78,0:78:99:0,220,2639 0/0:248,0:250:99:0,719,9449 0/0:246,0:246:99:0,695,9186 0/0:250,0:250:99:0,704,9246 0/0:212,1:213:99:0,564,7756 0/0:69,0:69:99:0,199,2430 0/0:93,0:94:99:0,262,3166 0/0:91,0:91:99:0,253,3054 0/0:98,0:98:99:0,280,3419 0/0:69,0:70:99:0,202,2469 0/0:114,0:114:99:0,298,3656 0/0:69,0:69:99:0,202,2442 0/0:90,0:90:99:0,241,2900 0/0:90,0:90:99:0,250,3038 0/0:99,0:99:99:0,277,3376 0/0:111,0:111:99:0,301,3685 0/0:94,1:95:99:0,230,3113 0/0:83,0:83:99:0,235,2869 0/1:55,45:100:99:1277,0,1529 0/1:48,31:79:99:838,0,1341 0/1:46,45:91:99:1325,0,1286 10 33552696 . A G 182737.65 . AC=84;AF=1.000;AN=84;BaseQRankSum=-0.224;DP=5528;DS;Dels=0.00;FS=12.719;HRun=0;HaplotypeScore=1.6117;InbreedingCoeff=0.0000;MQ=59.57;MQ0=0;MQRankSum=0.703;QD=33.06;ReadPosRankSum=-1.134 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2895,226,0 1/1:0,94:94:99:3009,250,0 1/1:0,88:88:99:2891,238,0 1/1:0,250:250:99:8637,710,0 1/1:0,250:250:99:9356,710,0 1/1:0,250:250:99:8561,695,0 1/1:0,249:250:99:8547,695,0 1/1:0,249:249:99:8583,701,0 1/1:0,100:100:99:2956,256,0 1/1:1,88:89:99:2740,211,0 1/1:0,95:95:99:3039,265,0 1/1:0,89:89:99:3177,265,0 1/1:0,90:90:99:2869,256,0 1/1:1,93:94:99:3017,250,0 1/1:2,248:250:99:7569,605,0 1/1:1,78:79:99:2516,195,0 1/1:0,97:97:99:3317,277,0 1/1:0,75:75:99:2389,211,0 1/1:0,157:158:99:4907,433,0 1/1:0,123:123:99:3665,307,0 1/1:0,141:141:99:4392,385,0 1/1:0,79:80:99:2495,226,0 1/1:0,249:250:99:8862,722,0 1/1:1,248:249:99:8676,671,0 1/1:0,250:250:99:8662,701,0 1/1:0,221:221:99:7653,620,0 1/1:0,67:67:99:2133,187,0 1/1:0,98:98:99:3185,283,0 1/1:0,95:95:99:3008,262,0 1/1:0,102:103:99:3249,286,0 1/1:0,71:71:99:2340,211,0 1/1:0,121:121:99:3768,319,0 1/1:0,72:72:99:2385,214,0 1/1:1,93:94:99:2853,216,0 1/1:0,92:92:99:2895,253,0 1/1:1,99:100:99:3152,248,0 1/1:1,114:115:99:3506,279,0 1/1:0,94:95:99:3022,271,0 1/1:0,85:85:99:2725,241,0 1/1:0,98:98:99:3325,280,0 1/1:0,78:78:99:2653,220,0 1/1:0,90:90:99:3154,259,0 10 33552776 . T C 2792.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=-11.042;DP=6206;DS;Dels=0.00;FS=0.378;HRun=0;HaplotypeScore=1.7942;InbreedingCoeff=-0.0244;MQ=59.48;MQ0=0;MQRankSum=0.375;QD=11.17;ReadPosRankSum=-1.648 GT:AD:DP:GQ:PL 0/0:114,0:114:99:0,313,3887 0/0:114,0:114:99:0,304,3804 0/0:98,0:98:99:0,271,3361 0/0:250,0:250:99:0,689,8614 0/0:249,1:250:99:0,682,8697 0/0:246,1:247:99:0,674,8680 0/0:247,0:247:99:0,680,8744 0/0:248,0:248:99:0,680,8635 0/0:123,0:123:99:0,334,4141 0/0:100,0:100:99:0,271,3357 0/0:103,0:103:99:0,271,3369 0/0:124,0:124:99:0,316,3991 0/0:111,0:111:99:0,295,3669 0/0:122,0:122:99:0,331,4120 0/0:250,0:250:99:0,674,8339 0/0:85,0:85:99:0,220,2748 0/0:114,0:114:99:0,310,3861 0/0:116,0:116:99:0,304,3810 0/0:169,0:169:99:0,448,5653 0/0:147,0:147:99:0,388,4849 0/0:161,0:161:99:0,412,5234 0/0:100,0:100:99:0,268,3332 0/0:250,0:250:99:0,701,8817 0/0:231,0:231:99:0,647,8248 0/0:250,0:250:99:0,668,8567 0/0:227,0:227:99:0,626,7895 0/0:91,0:91:99:0,253,3107 0/0:135,0:135:99:0,349,4344 0/0:110,0:110:99:0,292,3677 0/0:123,0:123:99:0,319,4023 0/0:100,0:101:99:0,268,3351 0/0:151,0:151:99:0,385,4893 0/0:94,0:94:99:0,247,3094 0/0:121,0:121:99:0,340,4178 0/0:106,0:106:99:0,271,3363 0/0:159,0:159:99:0,427,5347 0/1:77,64:142:99:1553,0,2142 0/1:55,53:108:99:1302,0,1557 0/0:108,0:108:99:0,289,3591 0/0:108,0:108:99:0,307,3770 0/0:100,0:100:99:0,274,3392 0/0:97,0:97:99:0,265,3285 10 34408592 . T C 238.53 . AC=13;AF=0.155;AN=84;BaseQRankSum=-9.813;DP=510;Dels=0.00;FS=312.681;HRun=2;HaplotypeScore=0.3332;InbreedingCoeff=-0.2189;MQ=58.51;MQ0=0;MQRankSum=1.273;QD=1.66;ReadPosRankSum=-7.715 GT:AD:DP:GQ:PL 0/0:8,2:10:24.07:0,24,291 0/0:13,3:16:7.77:0,8,439 0/0:9,1:10:26.57:0,27,296 0/1:14,8:22:93.12:93,0,446 0/1:21,8:29:4.48:4,0,658 0/1:14,5:19:40.30:40,0,489 0/0:12,3:15:12.42:0,12,424 0/0:11,2:13:33.10:0,33,408 0/0:10,1:11:30.08:0,30,355 0/1:3,2:5:19.54:20,0,85 0/0:8,0:8:24.08:0,24,300 0/1:3,1:4:15.63:16,0,97 0/0:9,2:11:26.45:0,26,311 0/1:4,2:6:44.95:45,0,124 0/0:33,1:34:89.74:0,90,1065 0/0:8,2:10:1.60:4,0,274 0/0:10,2:12:28.90:0,29,347 0/0:6,1:7:18.05:0,18,211 0/0:8,1:9:21.07:0,21,260 0/0:14,4:18:7.55:0,8,397 0/0:13,1:14:36.05:0,36,430 0/1:6,4:10:37.77:38,0,180 0/0:14,4:18:19.45:0,19,505 0/1:7,3:10:45.95:46,0,232 0/0:16,2:18:45.14:0,45,561 0/1:9,5:14:22.95:23,0,295 0/0:11,1:12:33.10:0,33,399 0/0:7,0:8:18.06:0,18,224 0/1:4,1:5:18.39:18,0,133 0/0:8,1:9:24.08:0,24,300 0/0:4,0:4:12.04:0,12,153 0/0:22,3:25:60.19:0,60,744 0/0:12,2:14:33.09:0,33,389 0/0:10,1:11:0.46:0,0,298 0/1:5,2:7:11.57:12,0,168 0/1:6,1:7:5.62:6,0,202 0/0:14,2:16:39.07:0,39,436 0/1:5,1:6:12.54:13,0,170 0/0:7,0:7:21.06:0,21,258 0/0:9,2:11:2.30:2,0,272 0/0:9,1:10:0.47:0,0,312 0/0:5,0:5:15.04:0,15,173 10 34408636 . T C 6754.46 . AC=27;AF=0.321;AN=84;BaseQRankSum=8.121;DP=811;Dels=0.00;FS=16.550;HRun=1;HaplotypeScore=0.4877;InbreedingCoeff=-0.0375;MQ=59.06;MQ0=0;MQRankSum=-1.100;QD=15.67;ReadPosRankSum=-2.835 GT:AD:DP:GQ:PL 1/1:0,20:20:57.17:703,57,0 0/1:8,10:18:99:262,0,190 0/0:16,0:16:45.13:0,45,521 0/0:39,0:39:99:0,105,1201 0/0:38,0:38:99:0,99,1190 0/1:20,19:40:99:463,0,571 0/1:11,8:19:99:218,0,300 1/1:0,26:26:66.19:857,66,0 0/0:20,0:20:57.13:0,57,648 0/0:9,0:9:24.07:0,24,293 0/0:13,0:13:39.10:0,39,437 0/1:5,5:10:99:151,0,133 0/0:19,0:19:48.13:0,48,565 0/1:11,6:17:83.60:84,0,342 0/1:26,25:51:99:669,0,624 0/1:8,7:15:99:201,0,242 0/1:4,8:12:63.33:229,0,63 0/0:12,0:12:30.09:0,30,357 0/0:14,0:14:36.10:0,36,431 0/0:23,0:23:60.17:0,60,702 0/1:10,11:21:99:306,0,242 0/0:22,0:22:60.17:0,60,715 0/0:41,0:42:99:0,108,1284 0/1:6,6:12:99:196,0,153 0/0:25,1:26:38.78:0,39,808 1/1:0,13:13:33.11:450,33,0 0/1:3,3:6:84.05:94,0,84 0/1:10,4:14:99:102,0,306 0/0:8,0:8:24.07:0,24,274 0/1:11,3:14:75.60:76,0,310 0/1:7,3:10:73.37:73,0,216 0/1:16,7:23:99:160,0,411 0/1:10,10:20:99:280,0,256 0/0:22,0:22:63.17:0,63,746 0/0:22,0:22:54.15:0,54,640 0/0:10,0:10:27.08:0,27,328 1/1:0,23:24:63.10:718,63,0 0/1:9,3:12:68.67:69,0,288 0/1:6,10:16:99:255,0,147 0/0:14,0:14:36.11:0,36,437 0/1:12,6:18:99:141,0,322 0/0:11,0:11:33.10:0,33,387 10 35495822 . G C 736.15 . AC=2;AF=0.024;AN=84;BaseQRankSum=-32.781;DP=7647;DS;Dels=0.00;FS=3200.000;HRun=1;HaplotypeScore=5.9558;InbreedingCoeff=-0.0469;MQ=59.19;MQ0=0;MQRankSum=4.026;QD=1.48;ReadPosRankSum=-25.817 GT:AD:DP:GQ:PL 0/0:113,42:155:99:0,124,3674 0/0:110,39:149:99:0,167,3598 0/0:115,46:161:99:0,239,3968 0/0:159,91:250:99:0,249,5585 0/0:161,89:250:99:0,212,5616 0/0:154,96:250:99:0,188,5072 0/0:180,70:250:99:0,391,6427 0/0:154,73:227:99:0,325,5625 0/0:111,32:143:99:0,237,3595 0/0:112,36:149:99:0,144,3576 0/0:99,37:136:61.72:0,62,3257 0/0:107,31:138:99:0,272,3651 0/0:107,34:141:99:0,127,3404 0/0:98,46:144:89.39:0,89,3026 0/1:113,137:250:99:737,0,3283 0/0:82,24:106:78.51:0,79,2535 0/0:118,52:170:99:0,204,3694 0/0:109,36:145:99:0,157,3354 0/1:183,65:249:58.40:58,0,5537 0/0:180,70:250:99:0,184,5320 0/0:175,75:250:0.35:11,0,5432 0/0:124,53:177:99:0,261,3805 0/0:151,99:250:99:0,176,5509 0/0:141,72:213:99:0,229,5083 0/0:166,84:250:99:0,303,5849 0/0:180,70:250:99:0,437,6572 0/0:67,29:96:99:0,148,2259 0/0:127,41:168:99:0,166,4080 0/0:90,41:131:99:0,139,2955 0/0:97,41:138:0.75:7,0,3075 0/0:99,38:137:99:0,164,3309 0/0:188,61:250:99:0,453,5728 0/0:125,50:175:99:0,217,3970 0/0:105,42:147:99:0,206,3554 0/0:105,47:152:99:0,176,3471 0/0:119,47:168:99:0,330,4160 0/0:185,64:250:99:0,175,5975 0/0:127,42:169:99:0,171,4209 0/0:106,34:141:99:0,103,3245 0/0:108,37:145:99:0,207,3668 0/0:99,30:129:99:0,159,3174 0/0:103,45:148:99:0,112,3199 10 37442591 . G T 1049.10 . AC=4;AF=0.048;AN=84;BaseQRankSum=2.199;DP=4402;DS;Dels=0.00;FS=37.997;HRun=1;HaplotypeScore=1.1179;InbreedingCoeff=-0.0500;MQ=40.37;MQ0=119;MQRankSum=-4.910;QD=2.52;ReadPosRankSum=-1.114 GT:AD:DP:GQ:PL 0/0:124,0:124:99:0,349,3741 0/0:96,0:96:99:0,268,2918 0/0:111,0:111:99:0,309,3315 0/1:102,16:118:99:172,0,3152 0/1:93,37:130:99:687,0,2897 0/0:103,0:103:99:0,277,3324 0/0:119,0:119:99:0,322,3893 0/0:125,0:125:99:0,334,3979 0/0:91,0:93:99:0,252,2714 0/0:73,0:73:99:0,207,2134 0/0:81,0:81:99:0,228,2496 0/1:79,11:90:53.37:53,0,2166 0/1:61,17:78:99:224,0,1615 0/0:103,0:103:99:0,276,2901 0/0:190,0:190:99:0,520,5852 0/0:68,0:68:99:0,180,1939 0/0:81,0:81:99:0,219,2437 0/0:88,0:88:99:0,249,2720 0/0:111,1:112:99:0,283,3300 0/0:106,0:106:99:0,286,3263 0/0:135,1:136:99:0,361,4118 0/0:98,0:98:99:0,265,3053 0/0:120,0:120:99:0,328,3940 0/0:124,0:124:99:0,337,3912 0/0:134,0:134:99:0,349,4080 0/0:114,0:114:99:0,307,3632 0/0:77,0:77:99:0,204,2260 0/0:105,0:105:99:0,294,3145 0/0:99,0:99:99:0,255,2799 0/0:88,0:88:99:0,234,2631 0/0:89,0:89:99:0,253,2760 0/0:105,0:105:99:0,280,3181 0/0:128,0:128:99:0,322,3573 0/0:96,0:96:99:0,273,2871 0/0:68,1:69:99:0,189,2068 0/0:123,0:123:99:0,325,3658 0/0:128,0:128:99:0,328,3698 0/0:76,0:76:99:0,204,2304 0/0:92,0:92:99:0,246,2692 0/0:111,0:111:99:0,291,3127 0/0:89,0:89:99:0,249,2766 0/0:112,0:112:99:0,318,3364 10 37478445 . G A 124.19 . AC=5;AF=0.192;AN=26;BaseQRankSum=1.267;DP=2103;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5377;InbreedingCoeff=0.4208;MQ=12.32;MQ0=689;MQRankSum=-21.347;QD=0.70;ReadPosRankSum=1.684 GT:AD:DP:GQ:PL ./. 1/1:2,48:50:3.01:33,3,0 ./. ./. 0/1:2,50:52:7.69:103,0,8 ./. ./. 0/0:3,64:68:2.99:0,3,23 ./. ./. ./. 0/0:1,44:45:2.99:0,3,23 0/0:4,15:19:5.99:0,6,54 0/0:4,38:42:3.01:0,3,45 ./. 0/1:1,30:31:1.76:28,3,0 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/1:3,41:45:1.76:30,3,0 ./. ./. ./. ./. ./. 0/0:68,12:80:99:0,156,1400 ./. 0/0:130,27:157:99:0,305,2698 ./. 0/0:109,28:139:99:0,266,2261 0/0:64,30:94:99:0,161,1357 ./. 0/0:61,47:109:99:0,153,1318 10 37478486 . G T 48.75 . AC=1;AF=0.042;AN=24;BaseQRankSum=4.207;DP=2280;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.3934;InbreedingCoeff=0.4024;MQ=8.23;MQ0=1434;MQRankSum=-4.487;QD=0.89;ReadPosRankSum=2.458 GT:AD:DP:GQ:PL ./. ./. ./. ./. 0/1:16,39:55:0.27:99,12,0 ./. ./. 0/0:66,0:66:2.99:0,3,23 ./. ./. ./. 0/0:35,13:48:2.99:0,3,23 0/0:33,9:42:5.99:0,6,55 ./. ./. 0/0:26,0:26:3:0,3,28 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0:41,0:41:2.99:0,3,23 ./. 0/0:57,0:57:2.99:0,3,23 ./. ./. 0/0:72,0:72:80.85:0,81,742 ./. 0/0:146,0:146:99:0,141,1290 ./. 0/0:116,0:116:99:0,108,995 0/0:68,0:69:65.83:0,66,582 ./. 0/0:68,0:68:53.86:0,54,474 10 43315692 . C T 6744.74 . AC=3;AF=0.036;AN=84;BaseQRankSum=-5.217;DP=4899;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.6109;InbreedingCoeff=-0.0370;MQ=55.19;MQ0=44;MQRankSum=-7.436;QD=11.04;ReadPosRankSum=1.070 GT:AD:DP:GQ:PL 0/0:97,0:97:99:0,241,2955 0/0:98,1:99:99:0,262,3169 0/0:84,0:84:99:0,229,2821 0/0:236,0:238:99:0,614,8055 0/0:213,0:213:99:0,551,7270 0/1:119,100:220:99:2580,0,3229 0/0:190,0:190:99:0,478,6362 0/1:79,73:152:99:1778,0,2173 0/0:85,0:85:99:0,223,2753 0/0:81,0:81:99:0,217,2704 0/0:85,0:85:99:0,223,2737 0/0:99,0:99:99:0,259,3185 0/0:72,0:72:99:0,181,2229 0/0:79,0:79:99:0,217,2613 0/0:248,1:250:99:0,608,7783 0/0:48,0:48:99:0,141,1732 0/0:98,0:98:99:0,253,3140 0/0:94,0:95:99:0,250,3027 0/0:114,0:114:99:0,301,3660 0/0:111,0:111:99:0,289,3581 0/0:105,0:106:99:0,259,3273 0/0:46,0:46:99:0,126,1547 0/1:138,101:239:99:2387,0,3866 0/0:184,0:184:99:0,442,5851 0/0:216,1:217:99:0,542,7201 0/0:170,0:170:99:0,436,5684 0/0:55,1:56:99:0,127,1906 0/0:86,0:86:99:0,223,2749 0/0:70,0:70:99:0,174,2202 0/0:93,0:93:99:0,256,3188 0/0:74,0:74:99:0,208,2532 0/0:115,0:115:99:0,268,3411 0/0:63,0:63:99:0,171,2093 0/0:96,0:96:99:0,253,3119 0/0:106,0:107:99:0,277,3424 0/0:107,0:107:99:0,295,3634 0/0:97,0:98:99:0,259,3190 0/0:106,0:106:99:0,277,3402 0/0:85,0:86:99:0,226,2755 0/0:94,0:94:99:0,268,3254 0/0:73,0:73:99:0,202,2379 0/0:103,0:103:99:0,280,3447 10 43615633 . C G 2325.63 . 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G A 4279.22 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.628;DP=5350;DS;Dels=0.00;FS=3.982;HRun=0;HaplotypeScore=3.2820;InbreedingCoeff=-0.0244;MQ=59.55;MQ0=1;MQRankSum=4.658;QD=10.57;ReadPosRankSum=0.968 GT:AD:DP:GQ:PL 0/0:103,0:103:99:0,268,3222 0/0:87,0:87:99:0,235,2846 0/0:92,0:92:99:0,241,2938 0/0:225,0:225:99:0,545,7091 0/0:218,0:218:99:0,575,7332 0/1:121,83:204:99:2133,0,3255 0/0:208,0:209:99:0,539,7015 0/1:111,90:201:99:2146,0,2889 0/0:88,0:88:99:0,241,3009 0/0:84,0:84:99:0,208,2532 0/0:91,0:91:99:0,253,3228 0/0:85,0:85:99:0,217,2582 0/0:93,0:93:99:0,241,2879 0/0:78,0:78:99:0,205,2457 0/0:249,0:250:99:0,632,7611 0/0:69,0:69:99:0,181,2254 0/0:113,0:114:99:0,289,3522 0/0:99,0:99:99:0,256,3087 0/0:141,0:141:99:0,340,4090 0/0:124,0:125:99:0,313,3923 0/0:112,0:112:99:0,256,3097 0/0:66,1:68:99:0,159,1943 0/0:250,0:250:99:0,626,8055 0/0:249,0:249:99:0,602,7797 0/0:247,0:248:99:0,608,7898 0/0:203,0:203:99:0,496,6368 0/0:76,0:76:99:0,202,2404 0/0:88,0:88:99:0,226,2662 0/0:78,0:78:99:0,208,2559 0/0:118,0:118:99:0,310,3871 0/0:88,0:88:99:0,232,2772 0/0:134,0:134:99:0,325,4207 0/0:95,0:95:99:0,223,2794 0/0:97,0:97:99:0,265,3363 0/0:92,0:92:99:0,247,3086 0/0:98,0:98:99:0,229,2826 0/0:121,1:122:99:0,310,3657 0/0:91,0:91:99:0,226,2732 0/0:83,0:84:99:0,220,2680 0/0:112,0:112:99:0,283,3451 0/0:86,1:87:99:0,220,2703 0/0:103,0:104:99:0,265,3255 10 43696279 . A G 4411.18 . 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T G 2101.57 . AC=27;AF=0.321;AN=84;BaseQRankSum=-31.191;DP=3641;DS;Dels=0.00;FS=3200.000;HRun=2;HaplotypeScore=2.6681;InbreedingCoeff=-0.4698;MQ=58.97;MQ0=0;MQRankSum=0.871;QD=1.02;ReadPosRankSum=-29.362 GT:AD:DP:GQ:PL 0/1:34,24:58:40.80:41,0,971 0/1:42,20:62:25.38:25,0,1307 0/1:37,29:66:99:104,0,935 0/1:124,70:194:71.15:71,0,3440 0/0:109,52:161:36.85:0,37,3447 0/0:90,48:138:32.46:0,32,2945 0/0:74,39:114:12.42:0,12,2399 0/1:69,45:115:28.58:29,0,2054 0/1:40,26:67:26.94:27,0,1142 0/1:30,22:52:21.55:22,0,881 0/1:32,22:54:79.35:79,0,904 0/1:32,19:51:58.01:58,0,1025 0/1:35,19:54:8.22:8,0,1043 0/1:30,20:50:99:136,0,915 0/1:117,78:195:99:317,0,3241 0/0:33,17:50:40.62:0,41,1076 0/0:42,23:65:99:0,103,1408 0/1:38,32:70:36.26:36,0,1058 0/1:57,39:97:99:241,0,1486 0/0:70,46:117:22:0,22,2190 0/1:70,48:118:99:260,0,1964 0/0:51,31:82:28.08:0,28,1442 0/0:123,58:181:32.36:0,32,3767 0/0:64,34:98:18.91:0,19,2092 0/0:83,47:130:49.95:0,50,2731 0/0:67,35:103:38.88:0,39,2157 0/1:30,22:52:15.51:16,0,876 0/1:35,32:67:99:127,0,1091 0/0:37,14:51:43.51:0,44,1204 0/0:37,23:60:27.27:0,27,1178 0/1:45,20:65:17.22:17,0,1355 0/0:99,62:161:84.52:0,85,2997 0/0:51,27:78:16.62:0,17,1505 0/1:38,19:57:93.13:93,0,1021 0/1:33,29:63:99:133,0,919 0/1:46,24:70:39.09:39,0,1371 0/1:64,41:105:99:136,0,1741 0/1:36,21:57:42.70:43,0,949 0/1:31,17:48:63.39:63,0,956 0/1:27,22:49:12.23:12,0,758 0/1:34,27:61:99:119,0,935 0/1:39,16:55:28.54:29,0,1160 10 45485153 . C T 1563.46 . 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G A 510.41 . 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G A 752.46 . 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A G 2869.62 . AC=3;AF=0.036;AN=84;BaseQRankSum=-4.199;DP=4109;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.2883;InbreedingCoeff=-0.0370;MQ=59.49;MQ0=0;MQRankSum=1.280;QD=11.62;ReadPosRankSum=-1.594 GT:AD:DP:GQ:PL 0/0:87,0:88:99:0,244,2862 0/0:83,0:83:99:0,235,2805 0/0:57,0:59:99:0,159,1875 0/0:173,1:175:99:0,450,5796 0/0:161,0:161:99:0,463,5569 0/0:161,0:161:99:0,424,5237 0/0:125,0:125:99:0,337,4091 0/0:129,0:129:99:0,373,4402 0/1:39,38:77:99:998,0,1136 0/0:72,0:72:99:0,202,2366 0/1:39,31:70:99:825,0,1145 0/0:85,0:86:99:0,241,2842 0/0:67,0:68:99:0,190,2246 0/0:81,1:83:99:0,235,2722 0/0:243,0:246:99:0,650,7566 0/0:41,0:41:99:0,123,1452 0/0:83,0:84:99:0,232,2754 0/0:68,0:68:99:0,190,2264 0/0:96,1:99:99:0,277,3273 0/0:122,0:123:99:0,349,4089 0/0:121,0:125:99:0,334,3970 0/0:78,0:78:99:0,223,2626 0/0:182,0:182:99:0,499,6038 0/0:120,0:120:99:0,328,3983 0/0:127,1:128:99:0,352,4267 0/0:109,0:109:99:0,301,3606 0/0:59,0:59:99:0,159,1887 0/0:73,0:73:99:0,211,2486 0/0:67,0:67:99:0,193,2320 0/0:82,0:83:99:0,241,2870 0/0:74,1:75:99:0,214,2527 0/0:100,1:102:99:0,280,3322 0/0:62,0:62:99:0,174,2032 0/0:75,0:77:99:0,223,2626 0/0:80,0:80:99:0,229,2744 0/1:55,45:100:99:1121,0,1588 0/0:90,0:93:99:0,250,3002 0/0:91,1:93:99:0,262,3115 0/0:72,0:72:99:0,208,2463 0/0:80,0:80:99:0,235,2775 0/0:66,0:66:99:0,190,2219 0/0:87,0:87:99:0,241,2847 10 46224381 . C T 4784.09 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.822;DP=7361;DS;Dels=0.00;FS=6.800;HRun=0;HaplotypeScore=2.4966;InbreedingCoeff=-0.0370;MQ=39.25;MQ0=387;MQRankSum=-0.011;QD=10.87;ReadPosRankSum=0.140 GT:AD:DP:GQ:PL 0/0:131,0:131:99:0,346,3802 0/0:163,0:163:99:0,406,4403 0/0:127,0:127:99:0,340,3668 0/0:219,0:219:99:0,553,6479 0/0:204,0:204:99:0,499,5966 0/0:228,0:228:99:0,595,6955 0/0:198,0:198:99:0,523,6164 0/0:204,0:204:99:0,502,5945 0/1:58,83:141:99:2001,0,1196 0/0:145,0:145:99:0,349,3842 0/1:77,62:139:99:1377,0,1755 0/0:163,0:163:99:0,409,4429 0/0:150,0:150:99:0,376,4070 0/0:149,0:149:99:0,361,3980 0/0:249,1:250:99:0,641,7251 0/0:111,0:111:99:0,286,3106 0/0:130,0:130:99:0,340,3746 0/0:154,0:154:99:0,394,4242 0/0:248,1:250:99:0,577,6730 0/0:249,0:249:99:0,574,6440 0/0:248,0:250:99:0,610,6926 0/0:143,0:143:99:0,355,3981 0/0:249,1:250:99:0,605,7283 0/0:176,0:176:99:0,433,5067 0/0:232,0:233:99:0,583,6841 0/0:180,0:180:99:0,448,5206 0/0:107,0:108:99:0,268,2925 0/0:148,0:148:99:0,379,4117 0/0:163,0:163:99:0,409,4457 0/0:151,0:152:99:0,382,4184 0/0:153,0:153:99:0,367,4099 0/0:250,0:250:99:0,625,6982 0/0:179,0:179:99:0,478,5257 0/0:155,0:155:99:0,373,4136 0/0:157,0:157:99:0,382,4136 0/1:90,70:160:99:1406,0,2189 0/0:238,0:239:99:0,574,6386 0/0:140,0:140:99:0,337,3736 0/0:140,1:141:99:0,316,3759 0/0:150,0:150:99:0,361,3966 0/0:137,0:137:99:0,352,3772 0/0:189,2:191:99:0,456,5332 10 46242094 . A G 100.45 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.835;DP=7289;DS;Dels=0.00;FS=27.367;HRun=2;HaplotypeScore=1.6228;InbreedingCoeff=-0.0134;MQ=51.49;MQ0=32;MQRankSum=-11.739;QD=0.68;ReadPosRankSum=-1.155 GT:AD:DP:GQ:PL 0/0:163,0:163:99:0,430,5329 0/0:183,0:183:99:0,493,6175 0/0:134,0:134:99:0,364,4532 0/0:210,0:210:99:0,548,7059 0/0:226,0:226:99:0,587,7768 0/0:218,1:219:99:0,550,7456 0/0:218,0:218:99:0,578,7538 0/0:211,0:211:99:0,563,7330 0/0:96,30:126:75.53:0,76,2979 0/0:138,0:138:99:0,382,4767 0/0:74,26:100:9.23:0,9,2274 0/0:160,0:160:99:0,439,5471 0/0:143,0:143:99:0,376,4747 0/0:146,0:146:99:0,385,4737 0/0:250,0:250:99:0,692,8678 0/0:129,0:129:99:0,349,4293 0/0:165,0:165:99:0,436,5492 0/0:163,0:163:99:0,457,5504 0/0:213,0:213:99:0,569,7109 0/0:216,0:216:99:0,572,7244 0/0:225,0:226:99:0,590,7504 0/0:161,0:161:99:0,421,5322 0/0:212,1:213:99:0,546,7384 0/0:221,0:221:99:0,599,7782 0/0:217,0:217:99:0,560,7399 0/0:179,0:180:99:0,463,6096 0/0:122,0:122:99:0,337,4145 0/0:188,1:189:99:0,476,6193 0/0:133,0:133:99:0,340,4266 0/0:145,0:145:99:0,397,4862 0/0:151,0:151:99:0,403,5103 0/0:198,2:200:99:0,499,6670 0/0:190,0:190:99:0,490,6133 0/0:134,0:134:99:0,367,4545 0/0:123,0:123:99:0,340,4137 0/1:108,40:148:99:147,0,3269 0/0:220,0:221:99:0,578,7334 0/0:187,0:187:99:0,490,6121 0/0:155,0:155:99:0,421,5158 0/0:159,0:159:99:0,430,5385 0/0:144,0:144:99:0,397,4897 0/0:157,0:157:99:0,427,5307 10 46254776 . A C 434.78 . AC=10;AF=0.122;AN=82;BaseQRankSum=10.920;DP=2842;Dels=0.00;FS=2.580;HRun=1;HaplotypeScore=1.9390;InbreedingCoeff=0.3235;MQ=23.32;MQ0=102;MQRankSum=5.475;QD=2.22;ReadPosRankSum=2.037 GT:AD:DP:GQ:PL 0/0:59,1:60:99:0,131,1372 0/1:0,1:1:1.76:33,3,0 0/1:0,2:2:1.76:38,3,0 0/0:102,4:106:99:0,180,2094 0/0:87,5:93:99:0,161,1786 0/0:140,2:142:99:0,305,3003 0/0:71,4:75:99:0,101,1568 0/0:125,2:128:99:0,321,2754 0/1:0,1:1:1.76:33,3,0 0/0:30,2:32:14.69:0,15,592 0/1:31,6:37:34.13:34,0,595 0/0:48,4:52:45.29:0,45,991 0/0:66,1:67:99:0,168,1476 0/0:47,2:49:90.04:0,90,1038 0/0:206,17:223:95.10:0,95,4227 0/1:19,2:21:4.17:4,0,319 0/0:54,0:54:99:0,138,1187 0/0:88,1:89:99:0,215,1966 0/0:171,1:172:99:0,398,3724 0/0:69,4:73:99:0,101,1522 0/0:153,0:153:99:0,369,3295 0/1:25,12:37:99:155,0,476 0/0:180,3:183:99:0,418,4115 0/0:43,5:48:11.28:0,11,886 0/1:50,9:59:99:125,0,971 0/0:77,1:78:99:0,188,1753 ./. 0/0:54,1:55:99:0,156,1341 0/0:23,2:25:32.51:0,33,516 0/0:29,1:30:41.53:0,42,639 0/1:0,3:3:1.76:39,3,0 0/0:111,2:113:99:0,248,2406 0/0:30,2:32:20.04:0,20,620 0/0:83,1:84:99:0,209,1988 0/0:87,2:89:99:0,203,1981 0/0:47,2:49:79.51:0,80,1053 0/0:64,2:66:96.63:0,97,1359 0/1:2,6:8:34.35:85,0,34 0/0:77,1:78:99:0,179,1752 0/0:60,2:62:69.70:0,70,1129 0/0:82,3:85:99:0,210,1782 0/1:24,3:27:26.46:26,0,478 10 46254783 . A G 323.97 . AC=8;AF=0.098;AN=82;BaseQRankSum=5.336;DP=3173;DS;Dels=0.00;FS=23.003;HRun=0;HaplotypeScore=2.1839;InbreedingCoeff=0.4680;MQ=22.23;MQ0=344;MQRankSum=3.682;QD=1.63;ReadPosRankSum=-4.017 GT:AD:DP:GQ:PL 0/0:66,1:67:99:0,134,1441 0/1:3,6:9:0.97:67,6,0 0/1:2,7:9:0.51:111,9,0 0/0:105,8:113:99:0,158,2151 0/0:95,10:105:99:0,113,1753 0/0:157,0:157:99:0,348,3082 0/0:85,0:85:99:0,207,1841 0/0:134,0:134:99:0,324,2814 0/1:3,2:5:1.76:33,3,0 0/0:34,2:36:77.95:0,78,716 0/0:35,4:39:8.18:0,8,665 0/0:50,7:57:38.37:0,38,963 0/0:71,3:74:99:0,171,1523 0/0:54,5:59:90.10:0,90,1078 0/0:239,11:250:99:0,413,4921 0/0:20,3:23:17.50:0,18,362 0/0:60,0:60:99:0,138,1205 0/0:98,0:98:99:0,243,2039 0/0:186,0:186:99:0,441,3941 0/0:75,7:82:99:0,111,1607 0/0:168,0:168:99:0,372,3373 0/1:33,14:47:55.07:55,0,602 0/0:190,5:195:99:0,388,4122 0/0:52,4:56:81.16:0,81,1063 0/1:60,12:72:54.22:54,0,1077 0/0:86,0:86:99:0,207,1803 ./. 0/0:56,4:60:99:0,153,1330 0/0:24,3:27:32.51:0,33,517 0/0:32,4:36:38.55:0,39,633 0/1:2,5:7:1.76:40,3,0 0/0:119,5:124:99:0,221,2410 0/0:32,4:36:20.06:0,20,638 0/0:91,1:92:99:0,218,2030 0/0:92,3:95:99:0,206,2031 0/0:53,0:53:99:0,135,1267 0/0:67,10:77:52.47:0,52,1307 0/1:4,10:14:64.80:73,0,65 0/0:81,1:82:99:0,182,1791 0/0:66,0:66:99:0,153,1359 0/0:89,5:94:99:0,219,1892 0/1:32,4:36:28.34:28,0,480 10 46969312 . G A 1275.77 . AC=11;AF=0.131;AN=84;BaseQRankSum=-8.548;DP=1188;Dels=0.00;FS=8.378;HRun=0;HaplotypeScore=0.7370;InbreedingCoeff=-0.1508;MQ=57.97;MQ0=0;MQRankSum=0.501;QD=4.24;ReadPosRankSum=0.146 GT:AD:DP:GQ:PL 0/0:14,0:16:39.12:0,39,479 0/0:15,0:15:39.11:0,39,465 0/0:26,0:26:66.20:0,66,806 0/0:60,0:60:99:0,178,2285 0/0:25,0:25:72.23:0,72,941 0/0:30,0:30:87.28:0,87,1128 0/0:26,0:26:78.25:0,78,1029 0/0:37,0:37:99:0,102,1341 0/0:19,0:19:48.14:0,48,569 0/0:21,0:21:57.17:0,57,690 0/0:28,0:28:69.21:0,69,844 0/0:17,0:17:45.13:0,45,541 0/0:20,0:20:54.17:0,54,668 0/0:22,0:23:66.20:0,66,793 0/0:54,0:54:99:0,144,1647 0/0:18,0:18:48.15:0,48,586 0/0:17,0:17:45.13:0,45,542 0/0:14,0:14:39.12:0,39,484 0/0:35,0:35:90.24:0,90,1074 0/0:51,0:51:99:0,150,1782 0/1:47,11:58:99:144,0,1345 0/1:28,6:34:99:118,0,749 0/0:79,0:79:99:0,220,2875 0/1:16,5:21:99:117,0,565 0/1:29,6:35:99:114,0,948 0/1:30,8:38:99:130,0,1014 0/1:6,8:14:99:205,0,178 0/0:19,0:20:51.14:0,51,610 0/1:12,3:15:61.89:62,0,319 0/0:25,0:25:69.19:0,69,816 0/0:33,0:33:96.26:0,96,1123 0/0:51,0:51:99:0,144,1697 0/1:23,11:34:99:261,0,664 0/0:12,0:12:33.10:0,33,402 0/0:10,0:10:27.09:0,27,339 0/0:27,0:27:75.23:0,75,930 0/0:37,0:37:93.25:0,93,1096 0/0:28,1:29:40.88:0,41,854 0/1:15,3:18:49.80:50,0,485 0/1:10,3:13:66.90:67,0,288 0/1:13,8:21:99:149,0,354 0/0:12,0:12:27.08:0,27,341 10 49420008 . T C 8851.10 . 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A G 3089.97 . 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C T 846.04 . 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T C 196689.71 . AC=84;AF=1.000;AN=84;BaseQRankSum=1.762;DP=6523;DS;Dels=0.00;FS=3.848;HRun=2;HaplotypeScore=5.4836;InbreedingCoeff=0.0000;MQ=58.83;MQ0=0;MQRankSum=0.989;QD=30.15;ReadPosRankSum=1.144 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3791,349,0 1/1:0,106:106:99:3071,286,0 1/1:0,120:121:99:3657,340,0 1/1:1,249:250:99:8124,678,0 1/1:0,249:250:99:8271,701,0 1/1:0,225:226:99:7163,623,0 1/1:0,178:179:99:5844,502,0 1/1:0,229:231:99:7298,638,0 1/1:0,134:135:99:3858,349,0 1/1:0,123:123:99:3579,334,0 1/1:0,113:113:99:3291,307,0 1/1:0,139:139:99:3814,355,0 1/1:0,104:104:99:2999,286,0 1/1:1,115:116:99:3423,316,0 1/1:0,244:245:99:6798,637,0 1/1:0,139:140:99:4311,394,0 1/1:0,139:140:99:4138,382,0 1/1:0,97:100:99:2746,253,0 1/1:0,197:199:99:5603,526,0 1/1:0,215:216:99:6263,574,0 1/1:0,199:202:99:5801,529,0 1/1:0,150:150:99:4547,421,0 1/1:0,250:250:99:8166,701,0 1/1:0,125:125:99:4159,361,0 1/1:0,209:210:99:6879,590,0 1/1:0,158:158:99:5091,445,0 1/1:0,106:106:99:3255,304,0 1/1:0,121:122:99:3572,331,0 1/1:0,121:121:99:3561,328,0 1/1:0,99:99:99:2904,265,0 1/1:2,124:127:99:3614,294,0 1/1:0,224:224:99:6641,604,0 1/1:0,160:161:99:4767,451,0 1/1:0,129:129:99:3699,343,0 1/1:0,107:108:99:2943,277,0 1/1:0,149:150:99:4629,421,0 1/1:0,200:202:99:5874,541,0 1/1:0,110:110:99:3270,307,0 1/1:0,142:143:99:4225,391,0 1/1:0,129:129:99:3885,358,0 1/1:0,120:120:99:3640,346,0 1/1:0,116:117:99:3524,331,0 10 49667892 . C A 338.39 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.455;DP=2100;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.6530;InbreedingCoeff=-0.0120;MQ=58.11;MQ0=0;MQRankSum=-0.312;QD=10.25;ReadPosRankSum=1.859 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,126,1373 0/0:35,0:35:99:0,102,1122 0/0:39,0:39:99:0,111,1213 0/0:109,0:109:99:0,310,3685 0/0:104,0:104:99:0,295,3574 0/0:63,0:63:99:0,184,2168 0/0:53,0:53:99:0,144,1715 0/0:63,0:63:99:0,184,2260 0/0:59,0:59:99:0,162,1794 0/0:36,0:36:99:0,99,1094 0/1:19,14:33:99:385,0,473 0/0:26,0:26:75.16:0,75,797 0/0:25,0:25:72.15:0,72,761 0/0:26,0:26:78.19:0,78,847 0/0:91,0:92:99:0,253,2838 0/0:39,0:39:99:0,114,1220 0/0:38,0:38:99:0,102,1098 0/0:36,0:36:99:0,108,1195 0/0:56,0:56:99:0,147,1599 0/0:81,0:81:99:0,220,2503 0/0:69,0:69:99:0,199,2204 0/0:41,0:41:99:0,117,1289 0/0:90,1:91:99:0,204,2948 0/0:45,0:45:99:0,120,1456 0/0:53,0:53:99:0,144,1721 0/0:53,0:53:99:0,147,1765 0/0:35,0:35:93.25:0,93,1036 0/0:46,0:46:99:0,138,1495 0/0:32,0:32:93.22:0,93,1020 0/0:35,0:35:99:0,105,1129 0/0:35,0:35:99:0,102,1111 0/0:59,0:59:99:0,171,1896 0/0:60,0:60:99:0,165,1795 0/0:36,0:36:99:0,102,1083 0/0:31,0:31:90.23:0,90,982 0/0:49,0:49:99:0,138,1501 0/0:67,0:67:99:0,174,1932 0/0:38,0:38:99:0,105,1178 0/0:55,0:55:99:0,159,1715 0/0:36,0:36:96.25:0,96,1053 0/0:30,1:31:47.77:0,48,818 0/0:44,0:44:99:0,129,1405 10 50681033 . G A 24245.45 . AC=35;AF=0.417;AN=84;BaseQRankSum=0.628;DP=1828;Dels=0.00;FS=11.383;HRun=0;HaplotypeScore=0.9349;InbreedingCoeff=-0.0286;MQ=59.10;MQ0=0;MQRankSum=0.060;QD=19.18;ReadPosRankSum=0.330 GT:AD:DP:GQ:PL 0/1:19,17:37:99:443,0,474 0/0:49,0:49:99:0,132,1495 0/0:27,0:27:63.16:0,63,712 0/1:23,30:53:99:809,0,685 0/0:67,0:67:99:0,184,2291 0/1:32,17:49:99:476,0,883 0/1:23,24:48:99:663,0,518 0/0:37,0:37:99:0,105,1306 0/1:21,24:45:99:683,0,582 0/1:11,15:26:99:403,0,284 0/1:21,21:42:99:598,0,528 1/1:1,42:43:99:1368,120,0 1/1:0,49:49:99:1601,141,0 0/1:11,14:25:99:420,0,269 0/1:54,72:126:99:1897,0,1384 0/0:28,0:28:81.20:0,81,914 1/1:0,38:38:99:1303,111,0 0/1:16,16:32:99:458,0,375 0/0:47,0:48:99:0,120,1372 0/1:30,22:53:99:603,0,787 0/1:16,25:41:99:723,0,429 0/0:31,0:31:87.23:0,87,1005 1/1:0,63:63:99:2190,187,0 0/0:34,0:35:96.29:0,96,1217 0/0:48,0:49:99:0,120,1511 0/1:29,17:46:99:433,0,889 0/0:27,0:27:81.15:0,81,857 0/1:17,16:33:99:436,0,466 0/0:31,0:31:87.24:0,87,1008 0/1:13,17:30:99:504,0,321 0/0:39,0:39:99:0,105,1237 1/1:0,61:61:99:1930,159,0 0/1:20,21:41:99:576,0,504 0/1:15,19:34:99:527,0,433 1/1:0,32:32:96.25:1100,96,0 0/0:40,0:40:99:0,114,1346 0/0:54,0:56:99:0,141,1580 0/1:22,24:46:99:689,0,553 0/1:21,18:39:99:494,0,549 0/1:13,31:44:99:938,0,315 1/1:0,41:41:99:1320,114,0 0/1:20,27:47:99:661,0,475 10 50824117 . G A 44524.68 . AC=23;AF=0.274;AN=84;BaseQRankSum=-37.398;DP=5609;DS;Dels=0.00;FS=3.888;HRun=1;HaplotypeScore=3.2390;InbreedingCoeff=0.1019;MQ=59.42;MQ0=0;MQRankSum=0.064;QD=17.54;ReadPosRankSum=-3.787 GT:AD:DP:GQ:PL 0/1:76,62:138:99:1678,0,2228 0/1:52,55:107:99:1565,0,1494 0/0:107,0:107:99:0,274,3530 0/0:176,0:176:99:0,412,5698 0/0:147,0:147:99:0,376,5184 0/0:149,0:149:99:0,364,4941 0/0:85,0:85:99:0,226,3067 0/0:124,0:124:99:0,328,4460 0/1:63,74:138:99:1918,0,1771 1/1:0,113:113:99:3627,295,0 0/0:122,0:122:99:0,328,4216 0/0:92,0:93:99:0,244,3124 0/1:54,42:97:99:1133,0,1518 0/0:104,0:104:99:0,274,3535 1/1:0,250:250:99:7896,632,0 1/1:0,115:116:99:3766,304,0 0/1:40,52:92:99:1456,0,1133 0/0:99,0:99:99:0,274,3474 0/0:249,1:250:99:0,629,8097 0/1:117,111:228:99:3046,0,3310 0/1:88,97:186:99:2499,0,2436 0/0:153,0:154:99:0,388,5068 0/0:150,0:150:99:0,373,5120 0/0:79,0:79:99:0,208,2852 0/0:123,0:124:99:0,307,4232 0/0:119,0:119:99:0,292,4011 0/0:102,0:102:99:0,250,3280 0/0:128,0:128:99:0,328,4230 0/0:113,0:113:99:0,298,3799 0/1:70,42:112:99:1080,0,2240 0/1:44,54:98:99:1632,0,1265 0/1:110,105:215:99:2721,0,2902 0/0:143,2:145:99:0,359,4941 0/1:50,54:104:99:1444,0,1514 0/1:57,44:101:99:1216,0,1620 0/0:155,0:155:99:0,412,5279 0/0:215,0:215:99:0,569,7143 0/1:56,64:120:99:1786,0,1503 0/1:66,62:128:99:1704,0,1921 0/1:54,59:113:99:1721,0,1544 1/1:2,81:83:99:2639,149,0 0/0:130,0:130:99:0,346,4474 10 50828626 . G C 998.68 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.912;DP=2968;Dels=0.00;FS=1.536;HRun=1;HaplotypeScore=2.1265;InbreedingCoeff=-0.0120;MQ=58.99;MQ0=0;MQRankSum=1.543;QD=14.91;ReadPosRankSum=-0.033 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,144,1706 0/0:43,0:43:99:0,126,1489 0/0:49,0:49:99:0,132,1596 0/0:135,0:135:99:0,352,4594 0/0:91,0:91:99:0,268,3413 0/0:95,0:95:99:0,268,3377 0/0:63,0:63:99:0,181,2302 0/0:70,0:70:99:0,199,2486 0/0:44,0:44:99:0,120,1461 0/0:41,0:41:99:0,111,1337 0/0:60,0:60:99:0,178,2161 0/0:52,0:52:99:0,147,1757 0/0:55,0:55:99:0,147,1804 0/0:51,0:51:99:0,150,1805 0/0:206,0:207:99:0,526,6473 0/0:54,0:54:99:0,150,1756 0/0:56,0:56:99:0,153,1847 0/0:43,0:43:99:0,120,1446 0/0:101,0:103:99:0,277,3299 0/0:109,0:109:99:0,289,3483 0/0:103,0:105:99:0,268,3272 0/0:66,0:66:99:0,187,2227 0/0:126,0:126:99:0,355,4536 0/0:72,0:73:99:0,211,2657 0/0:74,0:76:99:0,214,2774 0/1:32,35:67:99:1045,0,930 0/0:62,0:62:99:0,177,2117 0/0:52,0:52:99:0,150,1821 0/0:54,0:54:99:0,147,1767 0/0:63,0:63:99:0,171,1977 0/0:50,0:51:99:0,141,1702 0/0:106,0:106:99:0,292,3595 0/0:66,0:66:99:0,193,2322 0/0:64,0:64:99:0,168,2073 0/0:42,0:42:99:0,123,1466 0/0:59,0:59:99:0,150,1798 0/0:93,0:93:99:0,253,3075 0/0:55,0:55:99:0,153,1823 0/0:47,0:47:99:0,135,1622 0/0:54,0:54:99:0,150,1806 0/0:62,0:62:99:0,178,2112 0/0:53,0:53:99:0,153,1801 10 50830155 . C G 4338.26 . 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C T 8500.54 . 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G A 25770.56 . 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C T 1972.80 . 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GTGCAGCCGCT G 9400.82 . 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T G 6246.28 . AC=35;AF=0.417;AN=84;BaseQRankSum=-10.319;DP=2936;DS;Dels=0.01;FS=3200.000;HRun=2;HaplotypeScore=10.8847;InbreedingCoeff=-0.7040;MQ=58.98;MQ0=0;MQRankSum=-1.505;QD=2.38;ReadPosRankSum=-28.210 GT:AD:DP:GQ:PL 0/1:31,13:44:94.13:94,0,724 0/0:25,3:28:6.79:0,7,712 0/1:24,10:34:60.34:60,0,613 0/1:120,74:194:99:619,0,2630 0/1:88,82:171:99:595,0,2039 0/1:71,56:128:99:507,0,1722 0/1:61,36:97:99:385,0,1374 0/1:66,52:118:99:316,0,1348 0/0:24,2:26:57.14:0,57,643 0/1:34,15:49:99:135,0,815 0/1:23,11:34:70.14:70,0,408 0/0:32,2:34:75.16:0,75,818 0/1:29,13:42:45.44:45,0,656 0/1:33,11:46:95.27:95,0,740 0/1:93,36:130:23.89:24,0,1897 0/1:36,11:47:0.35:0,0,967 0/1:29,11:40:99:103,0,709 0/1:26,11:37:99:162,0,586 0/1:42,30:75:99:147,0,808 0/1:75,44:119:99:147,0,1777 0/0:60,3:66:99:0,153,1758 0/1:48,21:69:99:115,0,1163 0/1:105,67:172:99:616,0,2389 0/1:62,39:101:69.67:70,0,1246 0/1:72,49:121:99:362,0,1721 0/1:56,44:100:99:297,0,1296 0/1:23,9:32:70.14:70,0,571 0/1:34,11:46:46.43:46,0,883 0/1:28,15:43:39.59:40,0,729 0/1:28,14:43:99:117,0,635 0/1:30,13:43:99:153,0,781 0/1:68,24:93:64.45:64,0,1729 0/1:55,24:79:71.50:71,0,1348 0/1:24,12:36:99:122,0,630 0/1:27,12:39:99:101,0,606 0/0:36,6:42:17.74:0,18,934 0/1:49,26:76:99:122,0,1176 0/0:30,6:36:41.56:0,42,787 0/1:24,12:36:99:131,0,580 0/0:39,7:46:72.84:0,73,1093 0/1:32,13:45:99:121,0,883 0/1:25,15:40:99:121,0,591 10 50952101 . C G 3018.15 . 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G A 30290.11 . AC=50;AF=0.595;AN=84;BaseQRankSum=-17.898;DP=1798;Dels=0.00;FS=4.416;HRun=1;HaplotypeScore=0.8152;InbreedingCoeff=0.1106;MQ=58.81;MQ0=0;MQRankSum=2.308;QD=21.14;ReadPosRankSum=0.098 GT:AD:DP:GQ:PL 0/1:17,21:38:99:593,0,490 0/0:56,0:56:99:0,163,2027 0/0:34,0:34:96.30:0,96,1222 1/1:1,45:46:82.15:1471,82,0 0/1:28,19:47:99:538,0,873 0/1:14,23:37:99:706,0,392 0/1:24,16:40:99:389,0,716 0/1:22,11:33:99:268,0,779 0/1:20,22:42:99:587,0,626 0/1:12,27:39:99:727,0,287 1/1:0,30:30:84.23:1010,84,0 1/1:0,27:27:75.22:914,75,0 1/1:0,28:28:69.21:868,69,0 1/1:0,40:40:99:1334,108,0 0/1:73,65:138:99:1708,0,1924 0/0:43,0:43:99:0,114,1436 1/1:1,46:47:93.09:1551,93,0 0/1:22,14:36:99:358,0,670 0/0:53,0:53:99:0,135,1745 0/0:62,0:62:99:0,178,2215 0/1:43,35:78:99:947,0,1210 0/0:38,0:38:99:0,99,1269 0/1:24,24:48:99:686,0,844 1/1:1,29:30:38.61:951,39,0 1/1:0,30:30:78.25:1003,78,0 0/1:19,17:36:99:516,0,591 0/1:12,12:24:99:354,0,378 1/1:1,43:44:78.77:1352,79,0 0/1:16,15:31:99:455,0,495 1/1:0,34:34:93.27:1131,93,0 1/1:0,28:28:84.26:1024,84,0 1/1:0,38:38:99:1243,102,0 1/1:0,37:37:99:1199,99,0 0/1:28,18:46:99:450,0,830 0/0:41,0:41:99:0,108,1368 1/1:1,42:43:99:1486,123,0 0/1:36,18:54:99:497,0,1051 0/1:16,26:42:99:741,0,456 1/1:0,42:42:99:1478,120,0 0/1:22,20:42:99:563,0,653 1/1:0,38:38:96.29:1190,96,0 0/0:38,0:38:99:0,111,1407 10 51632855 . A G 8598.28 . 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G A 6553.27 . 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A G 3466.39 . 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G C 1843.89 . 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T C 28419.60 . AC=42;AF=0.500;AN=84;BaseQRankSum=-29.551;DP=2854;Dels=0.00;FS=1.130;HRun=0;HaplotypeScore=0.9119;InbreedingCoeff=-1.0000;MQ=25.90;MQ0=35;MQRankSum=-2.394;QD=9.96;ReadPosRankSum=-0.810 GT:AD:DP:GQ:PL 0/1:35,28:63:99:498,0,794 0/1:28,26:54:99:486,0,600 0/1:33,19:52:99:373,0,724 0/1:34,36:70:99:749,0,713 0/1:37,28:65:99:583,0,819 0/1:32,31:63:99:666,0,691 0/1:34,26:60:99:525,0,733 0/1:33,25:58:99:512,0,706 0/1:34,36:70:99:778,0,718 0/1:33,25:58:99:484,0,740 0/1:19,26:45:99:555,0,389 0/1:33,26:59:99:514,0,689 0/1:26,23:50:99:484,0,553 0/1:39,29:68:99:569,0,842 0/1:57,103:160:99:2204,0,1072 0/1:33,24:57:99:496,0,739 0/1:21,26:47:99:566,0,406 0/1:37,31:68:99:660,0,803 0/1:72,51:123:99:984,0,1564 0/1:31,47:78:99:1048,0,629 0/1:50,54:104:99:1160,0,986 0/1:35,34:69:99:731,0,763 0/1:36,31:67:99:591,0,774 0/1:28,22:50:99:449,0,615 0/1:17,34:51:99:756,0,286 0/1:27,26:53:99:550,0,586 0/1:20,33:53:99:757,0,414 0/1:31,31:62:99:649,0,667 0/1:30,19:49:99:334,0,657 0/1:30,30:60:99:639,0,567 0/1:15,20:35:99:433,0,256 0/1:73,54:127:99:1071,0,1654 0/1:35,32:68:99:644,0,766 0/1:36,33:69:99:678,0,755 0/1:32,28:60:99:592,0,683 0/1:46,33:79:99:665,0,992 0/1:60,50:110:99:998,0,1235 0/1:31,34:65:99:713,0,681 0/1:32,28:60:99:562,0,696 0/1:39,22:61:99:433,0,842 0/1:46,28:74:99:517,0,993 0/1:23,37:60:99:762,0,422 10 51892627 . G A 410.76 . 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C T 523.46 . 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C T 11271.08 . 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C T 1596.66 . 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C A 1904.17 . 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T C 436.64 . 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C T 53370.37 . 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C A 22195.39 . 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G A 4270.66 . 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C T 5000.39 . 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C T 53.68 . 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C G 72802.58 . 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C T 3044.44 . 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G A 70820.56 . 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A G 359.57 . 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T A 886.94 . 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G T 2825.69 . 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C T 63560.91 . 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T G 812.99 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.770;DP=3056;Dels=0.00;FS=4.558;HRun=3;HaplotypeScore=1.1683;InbreedingCoeff=-0.0120;MQ=59.37;MQ0=0;MQRankSum=0.753;QD=13.11;ReadPosRankSum=-1.338 GT:AD:DP:GQ:PL 0/0:65,0:65:99:0,166,2070 0/0:59,0:59:99:0,166,2037 0/0:64,0:64:99:0,159,1978 0/0:145,0:145:99:0,364,4614 0/0:105,1:106:99:0,243,3456 0/0:108,0:108:99:0,283,3666 0/0:84,0:84:99:0,220,2781 0/0:109,1:110:99:0,262,3573 0/0:70,0:70:99:0,187,2299 0/0:57,0:57:99:0,162,1989 0/0:47,0:47:99:0,138,1669 0/0:45,0:45:99:0,123,1522 0/0:36,0:36:96.30:0,96,1211 0/0:44,0:44:99:0,120,1477 0/0:183,0:183:99:0,472,5842 0/0:47,0:47:99:0,132,1621 0/0:68,0:68:99:0,187,2300 0/0:61,0:61:99:0,172,2099 0/0:91,2:93:99:0,235,2961 0/0:103,0:103:99:0,274,3357 0/0:93,1:94:99:0,235,2942 0/0:54,0:54:99:0,147,1808 0/0:147,0:147:99:0,382,4862 0/0:90,1:91:99:0,238,3023 0/0:90,0:90:99:0,232,2941 0/0:83,0:83:99:0,214,2683 0/0:36,0:36:99:0,102,1252 0/0:49,0:49:99:0,132,1641 0/0:49,0:49:99:0,138,1704 0/0:60,0:60:99:0,166,2043 0/0:37,0:37:99:0,105,1298 0/0:107,1:108:99:0,283,3527 0/1:32,30:62:99:859,0,737 0/0:65,0:65:99:0,178,2186 0/0:49,0:49:99:0,138,1692 0/0:64,0:65:99:0,171,2123 0/0:75,0:75:99:0,190,2375 0/0:48,0:48:99:0,141,1722 0/0:58,0:58:99:0,150,1868 0/0:48,0:48:99:0,123,1555 0/0:43,0:43:99:0,120,1472 0/0:50,0:50:99:0,144,1783 10 69571336 . G A 10417.63 . 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G A 21027.41 . 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A G 55838.51 . 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G T 6171.57 . 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C T 3119.65 . 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A G 8671.52 . 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G A 2928.76 . 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T C 82579.04 . 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T C 2303.36 . 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G A 56306.59 . 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C T 3799.10 . 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C T 8.95 . 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G A 2604.08 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.283;DP=4204;DS;Dels=0.00;FS=2.349;HRun=0;HaplotypeScore=2.6336;InbreedingCoeff=-0.0244;MQ=59.33;MQ0=0;MQRankSum=0.551;QD=16.48;ReadPosRankSum=-0.240 GT:AD:DP:GQ:PL 0/0:99,0:99:99:0,274,3229 0/0:78,0:79:99:0,202,2430 0/0:70,0:70:99:0,196,2339 0/0:164,0:164:99:0,421,5426 0/0:142,0:142:99:0,376,4852 0/0:120,0:120:99:0,304,3944 0/0:86,0:86:99:0,238,3020 0/0:105,0:105:99:0,265,3448 0/1:38,48:86:99:1424,0,1038 0/0:76,1:77:99:0,199,2386 0/1:31,40:72:99:1243,0,874 0/0:78,0:78:99:0,198,2326 0/0:79,0:80:99:0,223,2616 0/0:73,0:73:99:0,205,2421 0/0:243,0:243:99:0,644,7619 0/0:72,0:72:99:0,202,2341 0/0:65,0:65:99:0,168,1991 0/0:88,0:88:99:0,241,2837 0/0:136,0:136:99:0,355,4284 0/0:157,0:158:99:0,394,4740 0/0:141,0:141:99:0,373,4351 0/0:75,0:75:99:0,196,2349 0/0:196,0:199:99:0,518,6701 0/0:96,0:96:99:0,253,3249 0/0:115,1:116:99:0,283,3910 0/0:92,0:92:99:0,244,3136 0/0:67,0:67:99:0,187,2243 0/0:84,0:84:99:0,235,2739 0/0:73,0:73:99:0,205,2417 0/0:85,0:85:99:0,232,2775 0/0:73,0:73:99:0,208,2401 0/0:123,0:124:99:0,310,3714 0/0:100,0:100:99:0,286,3349 0/0:101,0:101:99:0,286,3303 0/0:91,1:92:99:0,220,2923 0/0:100,0:100:99:0,268,3224 0/0:112,0:113:99:0,280,3359 0/0:85,0:85:99:0,229,2729 0/0:80,0:80:99:0,235,2799 0/0:82,0:82:99:0,220,2610 0/0:54,0:54:99:0,150,1751 0/0:79,0:79:99:0,217,2594 10 70987060 . A G 1852.86 . 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C G 70.98 . 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C T 1912.34 . 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C A 36521.11 . 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C G 44693.30 . 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A C 423.52 . AC=10;AF=0.119;AN=84;BaseQRankSum=-31.306;DP=3624;DS;Dels=0.00;FS=902.601;HRun=1;HaplotypeScore=1.6693;InbreedingCoeff=-0.1404;MQ=58.86;MQ0=0;MQRankSum=1.191;QD=0.45;ReadPosRankSum=-16.475 GT:AD:DP:GQ:PL 0/0:36,21:57:72.62:0,73,1154 0/1:48,25:73:37.35:37,0,1299 0/0:38,13:51:84.63:0,85,1254 0/1:85,59:144:99:117,0,2471 0/0:75,46:121:60.74:0,61,2317 0/0:82,51:133:97.43:0,97,2674 0/0:49,37:86:99:0,103,1532 0/0:55,38:93:99:0,110,1832 0/0:59,22:81:99:0,168,1954 0/0:37,23:60:74.61:0,75,1142 0/0:41,31:72:32.69:0,33,1231 0/0:55,16:71:56.24:0,56,1729 0/1:44,26:70:73.42:73,0,1291 0/0:50,14:64:87.35:0,87,1681 0/1:120,96:216:99:130,0,3504 0/1:38,20:58:34.54:35,0,1017 0/0:60,28:89:99:0,125,2062 0/0:46,24:70:46.28:0,46,1316 0/1:70,35:105:62.95:63,0,2225 0/0:88,40:128:99:0,121,2541 0/0:78,36:114:47.41:0,47,2347 0/0:54,34:88:88.26:0,88,1584 0/0:66,63:129:52.01:0,52,2087 0/0:60,41:101:45.02:0,45,1770 0/0:76,55:132:80.40:0,80,2261 0/0:63,29:92:99:0,140,2064 0/1:32,17:49:24.92:25,0,949 0/0:46,37:83:84.41:0,84,1489 0/1:24,26:50:13.69:14,0,675 0/0:38,21:59:39.84:0,40,1212 0/0:44,16:60:97.60:0,98,1353 0/0:82,26:108:99:0,190,2498 0/1:50,41:91:21.02:21,0,1457 0/0:42,22:64:57.35:0,57,1247 0/0:44,25:69:64.57:0,65,1371 0/0:44,14:58:8.70:0,9,1257 0/0:63,22:85:4.18:0,4,1906 0/1:45,29:74:41.76:42,0,1313 0/0:43,27:70:97.72:0,98,1451 0/0:40,26:66:69.87:0,70,1307 0/0:44,18:63:68.33:0,68,1428 0/0:54,22:76:99:0,120,1757 10 71164655 . C T 3959.44 . 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T C 4914.96 . AC=16;AF=0.190;AN=84;BaseQRankSum=-3.256;DP=1131;Dels=0.00;FS=1.304;HRun=0;HaplotypeScore=1.0854;InbreedingCoeff=-0.0809;MQ=58.50;MQ0=0;MQRankSum=0.379;QD=13.00;ReadPosRankSum=0.660 GT:AD:DP:GQ:PL 0/1:8,9:17:99:229,0,198 0/1:10,14:24:99:346,0,278 0/0:14,0:14:36.11:0,36,434 0/1:24,16:40:99:379,0,559 0/1:24,12:36:99:297,0,608 0/1:8,15:23:99:329,0,132 0/1:12,12:24:99:355,0,284 0/0:19,0:19:54.17:0,54,662 0/0:15,0:15:42.12:0,42,491 0/0:24,0:24:63.18:0,63,763 0/0:22,0:22:54.15:0,54,642 0/0:26,0:26:72.22:0,72,869 0/0:14,0:14:39.12:0,39,464 0/0:23,0:23:66.18:0,66,766 0/0:90,0:91:99:0,220,2653 0/0:13,0:13:36.10:0,36,421 0/1:7,17:24:99:396,0,185 0/1:6,4:10:99:106,0,178 0/1:17,14:31:99:353,0,439 0/0:56,0:56:99:0,138,1718 0/0:37,0:37:93.26:0,93,1135 0/0:20,0:20:60.18:0,60,710 0/1:19,14:33:99:363,0,470 0/0:26,0:26:60.14:0,60,712 0/0:22,0:22:60.18:0,60,724 0/0:17,0:17:42.12:0,42,522 0/0:24,0:24:69.16:0,69,788 0/0:28,0:28:81.24:0,81,954 0/0:23,0:23:63.19:0,63,767 0/0:26,0:26:72.21:0,72,860 0/1:11,8:19:99:219,0,332 0/0:41,0:41:99:0,105,1264 0/0:29,0:29:81.21:0,81,930 0/0:27,0:27:78.22:0,78,899 0/0:27,0:27:78.23:0,78,922 0/0:23,0:23:60.15:0,60,691 0/1:15,21:36:99:524,0,348 0/0:33,0:33:75.22:0,75,931 1/1:0,22:22:66.14:719,66,0 0/1:10,6:16:92.77:93,0,309 0/1:14,9:23:99:207,0,423 0/0:33,0:33:96.22:0,96,1077 10 71562437 . G A 117680.49 . 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G A 1508.16 . AC=10;AF=0.119;AN=84;BaseQRankSum=1.435;DP=696;Dels=0.00;FS=5.769;HRun=0;HaplotypeScore=0.6103;InbreedingCoeff=-0.1560;MQ=59.02;MQ0=0;MQRankSum=0.376;QD=9.61;ReadPosRankSum=0.472 GT:AD:DP:GQ:PL 0/0:11,0:11:27.06:0,27,302 0/0:7,0:7:18.05:0,18,203 0/0:7,0:7:21.06:0,21,251 0/0:54,0:54:99:0,150,1817 0/1:17,8:25:99:219,0,517 0/0:29,0:29:75.22:0,75,912 0/0:20,1:21:28.63:0,29,668 0/0:28,0:28:69.22:0,69,888 0/1:4,7:11:99:186,0,120 0/0:8,0:8:24.07:0,24,280 0/1:6,6:12:99:161,0,153 0/0:12,0:12:36.10:0,36,421 0/0:13,0:13:33.09:0,33,395 0/0:11,0:11:30.09:0,30,371 0/0:38,0:38:93.24:0,93,1089 0/1:3,2:5:53.90:61,0,54 0/0:11,0:11:27.08:0,27,332 0/1:2,8:10:50.03:227,0,50 0/1:17,12:29:99:355,0,427 0/0:30,0:30:75.19:0,75,861 0/1:13,8:21:99:180,0,363 0/0:17,0:17:39.11:0,39,473 0/0:39,0:39:99:0,111,1362 0/0:24,0:24:66.20:0,66,806 0/0:14,0:14:39.10:0,39,462 0/0:24,0:24:60.18:0,60,725 0/0:6,0:6:15.04:0,15,165 0/0:11,0:11:30.09:0,30,350 0/0:12,0:12:36.10:0,36,417 0/0:10,0:10:24.07:0,24,307 0/0:3,0:3:9.03:0,9,109 0/1:18,9:27:99:222,0,489 0/0:16,0:16:45.13:0,45,523 0/0:5,0:5:12.03:0,12,143 0/0:8,1:9:2.72:1,0,228 0/0:16,0:16:42.11:0,42,486 0/0:21,0:21:54.13:0,54,613 0/1:9,1:10:6.38:6,0,252 0/0:14,0:14:39.11:0,39,471 0/1:6,1:7:15.93:16,0,168 0/0:9,1:10:1.15:5,0,263 0/0:8,0:8:24.06:0,24,270 10 71868934 . C G 422.81 . 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G A 468.03 . AC=3;AF=0.036;AN=84;BaseQRankSum=-4.521;DP=947;Dels=0.00;FS=9.052;HRun=0;HaplotypeScore=1.2039;InbreedingCoeff=-0.0371;MQ=58.95;MQ0=0;MQRankSum=-1.131;QD=11.42;ReadPosRankSum=0.389 GT:AD:DP:GQ:PL 0/0:20,0:21:51.15:0,51,623 0/0:16,0:16:48.14:0,48,571 0/0:15,0:16:39.08:0,39,442 0/0:39,0:39:99:0,99,1264 0/0:43,0:44:99:0,117,1488 0/0:35,0:36:93.27:0,93,1188 0/0:27,1:28:52.50:0,53,873 0/0:25,0:25:63.20:0,63,823 0/0:22,0:22:60.16:0,60,711 0/0:11,0:11:33.09:0,33,374 0/0:22,0:23:60.18:0,60,731 0/0:18,1:19:48.15:0,48,590 0/0:13,0:13:27.09:0,27,348 0/0:17,0:17:45.14:0,45,557 0/0:61,0:61:99:0,144,1792 0/0:20,0:20:57.17:0,57,697 0/0:12,0:12:33.09:0,33,380 0/1:4,3:7:80.15:80,0,117 0/0:21,0:23:48.14:0,48,578 0/0:27,0:27:72.22:0,72,894 0/0:33,0:33:87.26:0,87,1082 0/0:15,0:15:42.13:0,42,528 0/0:42,0:42:99:0,105,1375 0/0:16,0:16:36.10:0,36,451 0/0:18,0:18:45.14:0,45,574 0/0:28,0:29:78.24:0,78,984 0/1:6,5:11:99:140,0,189 0/1:9,13:23:99:324,0,257 0/0:18,0:18:48.14:0,48,582 0/0:23,0:23:54.15:0,54,657 0/0:25,0:25:72.22:0,72,879 0/0:23,0:23:54.17:0,54,685 0/0:24,0:24:66.19:0,66,806 0/0:20,0:21:54.16:0,54,665 0/0:18,0:18:51.11:0,51,590 0/0:21,0:21:57.17:0,57,679 0/0:18,0:20:36.10:0,36,424 0/0:18,0:18:48.14:0,48,586 0/0:17,0:17:48.15:0,48,589 0/0:11,0:11:33.10:0,33,401 0/0:25,0:25:75.21:0,75,901 0/0:16,0:16:45.14:0,45,559 10 71874734 . G A 624.26 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.251;DP=1131;Dels=0.00;FS=9.322;HRun=1;HaplotypeScore=0.5449;InbreedingCoeff=-0.0371;MQ=58.81;MQ0=0;MQRankSum=1.133;QD=13.01;ReadPosRankSum=-1.330 GT:AD:DP:GQ:PL 0/0:30,0:30:81.20:0,81,919 0/0:20,0:20:60.13:0,60,644 0/0:21,1:22:29.74:0,30,668 0/0:53,0:53:99:0,150,1908 0/0:30,0:30:81.26:0,81,1083 0/0:30,0:30:84.26:0,84,1096 0/0:37,0:37:99:0,111,1376 0/0:24,0:24:63.20:0,63,805 0/0:28,0:28:81.24:0,81,976 0/0:19,0:19:54.11:0,54,618 0/0:19,0:19:57.15:0,57,650 0/0:29,0:29:81.23:0,81,949 0/0:19,0:19:51.14:0,51,593 0/0:19,0:19:57.17:0,57,685 0/0:65,0:66:99:0,180,2083 0/0:23,0:23:69.20:0,69,798 0/0:25,0:25:69.19:0,69,799 0/1:6,7:13:99:209,0,176 0/0:29,0:29:81.23:0,81,967 0/0:34,0:35:81.24:0,81,992 0/0:33,0:33:93.28:0,93,1125 0/0:15,0:15:45.12:0,45,506 0/0:46,0:46:99:0,135,1695 0/0:17,0:17:48.15:0,48,603 0/0:20,0:20:57.18:0,57,736 0/0:37,0:37:93.29:0,93,1174 0/1:7,8:15:99:202,0,166 0/1:8,12:20:99:289,0,230 0/0:21,0:21:57.17:0,57,683 0/0:28,0:28:78.23:0,78,927 0/0:26,0:26:69.19:0,69,820 0/0:33,2:35:36.46:0,36,889 0/0:32,0:32:81.20:0,81,929 0/0:21,0:21:48.14:0,48,569 0/0:23,0:23:69.17:0,69,765 0/0:19,0:19:57.15:0,57,656 0/0:33,0:33:81.23:0,81,954 0/0:28,0:28:75.19:0,75,863 0/0:16,0:16:45.13:0,45,525 0/0:17,0:17:48.10:0,48,519 0/0:37,0:37:96.26:0,96,1136 0/0:22,0:22:63.18:0,63,760 10 71874866 . T C 932.79 . AC=3;AF=0.036;AN=84;BaseQRankSum=5.161;DP=1051;Dels=0.00;FS=0.712;HRun=1;HaplotypeScore=0.7330;InbreedingCoeff=-0.0370;MQ=59.27;MQ0=0;MQRankSum=0.247;QD=15.04;ReadPosRankSum=-0.636 GT:AD:DP:GQ:PL 0/0:16,0:16:48.14:0,48,558 0/0:23,0:23:63.19:0,63,755 0/0:20,0:20:54.16:0,54,660 0/0:25,0:25:66.19:0,66,777 0/0:30,0:30:87.26:0,87,1047 0/0:19,0:19:51.16:0,51,641 0/0:28,0:28:75.23:0,75,929 0/0:31,0:31:72.22:0,72,905 0/0:28,0:28:81.25:0,81,992 0/0:25,0:25:72.20:0,72,845 0/0:13,0:13:39.12:0,39,467 0/0:21,0:21:60.18:0,60,718 0/0:17,0:17:51.15:0,51,605 0/0:24,0:24:72.20:0,72,843 0/0:58,0:58:99:0,165,1978 0/0:20,0:20:51.14:0,51,599 0/0:24,0:24:66.20:0,66,796 0/1:9,11:20:99:291,0,275 0/0:33,0:33:81.23:0,81,969 0/0:42,0:42:99:0,117,1413 0/0:25,0:25:72.21:0,72,859 0/0:32,0:32:78.21:0,78,935 0/0:47,0:47:99:0,126,1500 0/0:20,0:20:54.16:0,54,669 0/0:20,0:20:57.17:0,57,683 0/0:23,0:23:69.17:0,69,801 0/1:10,13:23:99:396,0,255 0/1:9,10:19:99:321,0,262 0/0:23,0:23:57.17:0,57,707 0/0:23,0:23:69.21:0,69,837 0/0:19,0:19:51.15:0,51,605 0/0:37,0:37:93.29:0,93,1164 0/0:30,0:30:84.22:0,84,996 0/0:18,0:18:54.15:0,54,628 0/0:25,0:25:66.20:0,66,790 0/0:20,0:20:51.16:0,51,630 0/0:27,0:27:69.18:0,69,817 0/0:17,0:17:48.15:0,48,584 0/0:20,0:20:60.18:0,60,718 0/0:21,0:21:57.18:0,57,702 0/0:23,0:23:60.16:0,60,697 0/0:22,0:22:63.19:0,63,753 10 71876382 . C T 111071.63 . AC=68;AF=0.810;AN=84;BaseQRankSum=10.603;DP=4056;DS;Dels=0.00;FS=7.531;HRun=0;HaplotypeScore=2.0420;InbreedingCoeff=-0.0809;MQ=58.94;MQ0=0;MQRankSum=-0.190;QD=27.82;ReadPosRankSum=1.770 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2052,171,0 1/1:0,47:47:99:1598,135,0 1/1:0,54:54:99:1758,147,0 1/1:0,249:249:99:7914,638,0 1/1:0,230:230:99:7702,623,0 0/1:89,83:172:99:2369,0,2489 0/1:67,84:151:99:2424,0,1795 1/1:1,152:153:99:5060,384,0 1/1:0,57:57:99:1862,156,0 1/1:0,61:61:99:2079,175,0 0/1:40,22:62:99:571,0,1136 1/1:0,46:47:99:1553,129,0 0/1:18,22:40:99:610,0,454 1/1:0,60:60:99:1934,162,0 1/1:0,186:186:99:5815,496,0 0/1:31,37:68:99:1030,0,815 1/1:1,65:66:99:2269,166,0 0/0:63,0:63:99:0,180,2069 0/1:54,60:114:99:1654,0,1214 1/1:0,154:154:99:5028,415,0 1/1:0,140:140:99:4468,376,0 1/1:0,93:94:99:3080,259,0 1/1:0,233:233:99:7499,611,0 1/1:0,128:128:99:4401,355,0 1/1:0,157:157:99:5344,439,0 1/1:0,143:143:99:4902,403,0 0/1:29,37:66:99:1021,0,776 0/1:21,26:47:99:783,0,529 1/1:0,42:42:99:1469,123,0 0/1:26,22:48:99:621,0,688 1/1:0,54:54:99:1926,162,0 1/1:0,140:140:99:4716,394,0 0/1:40,39:79:99:1012,0,1063 1/1:0,68:68:99:2336,196,0 1/1:0,75:75:99:2522,211,0 1/1:0,58:58:99:1830,150,0 0/1:47,60:107:99:1717,0,1132 0/1:20,27:48:99:778,0,487 1/1:0,59:59:99:2053,174,0 0/1:37,25:63:99:638,0,994 0/1:28,29:57:99:737,0,764 1/1:0,56:56:99:1936,162,0 10 71969368 . A C 2593.52 . AC=1;AF=0.012;AN=84;BaseQRankSum=11.035;DP=4941;DS;Dels=0.00;FS=13.149;HRun=0;HaplotypeScore=1.8527;InbreedingCoeff=-0.0120;MQ=58.72;MQ0=52;MQRankSum=0.307;QD=16.41;ReadPosRankSum=0.798 GT:AD:DP:GQ:PL 0/0:78,0:78:99:0,220,2665 0/0:90,0:90:99:0,250,3038 0/0:85,0:85:99:0,232,2868 0/0:196,0:196:99:0,533,6642 0/0:224,0:224:99:0,611,7671 0/0:215,0:215:99:0,563,7238 0/0:171,0:171:99:0,442,5620 0/1:76,82:158:99:2640,0,2201 0/0:102,0:102:99:0,298,3539 0/0:78,0:78:99:0,214,2600 0/0:84,0:84:99:0,217,2718 0/0:83,0:83:99:0,247,2974 0/0:83,0:83:99:0,232,2813 0/0:74,0:74:99:0,199,2440 0/0:246,0:246:99:0,659,7961 0/0:67,0:67:99:0,181,2204 0/0:85,0:85:99:0,241,2959 0/0:89,0:89:99:0,247,3016 0/0:121,1:122:99:0,349,4224 0/0:102,0:102:99:0,289,3528 0/0:115,1:116:99:0,291,3868 0/0:92,0:92:99:0,244,3002 0/0:233,0:233:99:0,623,7708 0/0:178,0:178:99:0,491,6176 0/0:206,0:206:99:0,536,6733 0/0:168,1:169:99:0,460,5715 0/0:63,0:63:99:0,175,2114 0/0:87,0:87:99:0,250,3032 0/0:94,0:94:99:0,262,3175 0/0:95,0:95:99:0,268,3252 0/0:100,0:100:99:0,265,3294 0/0:110,0:110:99:0,292,3634 0/0:95,1:96:99:0,250,3114 0/0:77,0:77:99:0,220,2669 0/0:108,0:108:99:0,289,3556 0/0:102,0:102:99:0,268,3314 0/0:108,0:108:99:0,286,3531 0/0:95,1:96:99:0,262,3215 0/0:84,0:84:99:0,235,2846 0/0:124,0:124:99:0,325,3958 0/0:83,0:83:99:0,238,2853 0/0:87,0:87:99:0,250,3030 10 71974301 . A C 2000.93 . AC=25;AF=0.298;AN=84;BaseQRankSum=-30.319;DP=4096;Dels=0.00;FS=3200.000;HRun=1;HaplotypeScore=2.2686;InbreedingCoeff=-0.4373;MQ=48.03;MQ0=91;MQRankSum=-3.402;QD=0.85;ReadPosRankSum=-30.357 GT:AD:DP:GQ:PL 0/1:37,40:77:89.99:90,0,1006 0/0:51,35:86:99:0,103,1515 0/0:30,25:55:23.78:0,24,812 0/1:111,106:217:99:134,0,3124 0/1:103,97:200:99:149,0,3136 0/0:97,79:177:99:0,130,3014 0/1:80,67:149:53.17:53,0,2428 0/0:93,71:164:52.63:0,53,2754 0/0:41,23:64:7.79:0,8,1168 0/0:31,32:63:50.28:0,50,910 0/1:45,30:75:21.72:22,0,1131 0/1:38,34:72:99:191,0,1007 0/1:46,40:86:77.77:78,0,1284 0/1:22,28:50:99:124,0,572 0/1:130,110:241:99:247,0,3557 0/1:18,20:38:35.38:35,0,467 0/0:45,26:71:15.29:0,15,1325 0/1:32,39:71:57.89:58,0,939 0/0:51,27:78:74.40:0,74,1528 0/0:61,36:98:11.14:0,11,1772 0/1:66,49:115:49.22:49,0,1800 0/0:21,22:43:3.35:0,3,537 0/0:135,109:244:72.03:0,72,4216 0/1:92,85:177:68.57:69,0,2784 0/0:96,77:174:30.42:0,30,2912 0/0:92,76:168:99:0,107,2961 0/1:16,21:37:17.14:17,0,426 0/1:38,39:77:99:203,0,1021 0/1:21,17:38:51.88:52,0,640 0/1:35,33:68:99:130,0,886 0/1:33,26:59:21.04:21,0,955 0/1:53,31:84:33.57:34,0,1544 0/1:28,27:55:34.82:35,0,824 0/0:47,26:73:99:0,107,1567 0/0:43,20:63:34.97:0,35,1338 0/0:41,34:75:14.69:0,15,1177 0/1:52,39:91:99:196,0,1452 0/1:47,34:81:89.59:90,0,1310 0/0:38,21:59:43.27:0,43,1051 0/1:36,24:60:35.51:36,0,1048 0/1:29,26:55:25.06:25,0,904 0/1:41,27:68:41.15:41,0,1193 10 72293713 . C T 5608.43 . AC=12;AF=0.143;AN=84;BaseQRankSum=5.621;DP=1081;Dels=0.00;FS=52.970;HRun=0;HaplotypeScore=1.0241;InbreedingCoeff=0.1959;MQ=59.22;MQ0=0;MQRankSum=1.450;QD=17.53;ReadPosRankSum=2.776 GT:AD:DP:GQ:PL 0/0:12,0:12:27.05:0,27,316 0/0:16,0:16:48.11:0,48,525 0/0:25,0:25:63.18:0,63,757 0/1:25,30:55:99:842,0,594 0/0:54,0:54:99:0,132,1594 0/0:37,0:37:81.24:0,81,1056 0/1:15,11:27:99:321,0,380 0/1:14,22:36:99:538,0,411 0/0:19,0:19:48.13:0,48,558 0/0:21,0:21:51.12:0,51,575 0/0:16,0:16:42.12:0,42,497 0/0:17,0:17:42.13:0,42,513 0/0:17,0:17:39.11:0,39,478 0/0:21,0:21:57.16:0,57,672 0/0:70,0:71:99:0,165,1959 0/0:15,0:15:45.10:0,45,513 0/1:13,15:29:99:447,0,283 0/0:19,0:19:48.12:0,48,554 0/0:28,0:28:72.19:0,72,818 0/0:35,0:35:96.26:0,96,1090 0/0:41,0:41:96.24:0,96,1091 0/0:17,0:17:48.10:0,48,540 1/1:0,54:54:99:1761,144,0 1/1:0,18:18:48.15:595,48,0 0/1:22,20:42:99:515,0,625 0/1:21,9:30:99:222,0,563 0/1:3,7:10:78.81:170,0,79 0/0:18,0:20:42.12:0,42,514 0/1:12,7:19:99:195,0,267 0/0:16,0:16:42.12:0,42,499 0/0:10,0:10:30.07:0,30,338 0/0:35,0:36:78.24:0,78,988 0/0:34,0:34:87.22:0,87,999 0/0:10,0:10:27.08:0,27,324 0/0:21,0:22:54.13:0,54,636 0/0:19,0:19:51.13:0,51,598 0/0:30,0:30:81.19:0,81,905 0/0:20,0:21:54.13:0,54,604 0/0:13,0:13:36.11:0,36,421 0/0:17,0:17:39.09:0,39,426 0/0:11,1:12:2.06:2,0,300 0/0:20,0:20:57.13:0,57,630 10 72307101 . C T 24300.33 . AC=15;AF=0.179;AN=84;BaseQRankSum=18.027;DP=5712;DS;Dels=0.00;FS=21.226;HRun=0;HaplotypeScore=3.5916;InbreedingCoeff=0.1072;MQ=59.34;MQ0=0;MQRankSum=-0.541;QD=15.86;ReadPosRankSum=0.466 GT:AD:DP:GQ:PL 0/1:55,56:111:99:1616,0,1370 1/1:0,119:119:99:3960,325,0 0/1:58,46:104:99:1086,0,1480 0/0:219,0:219:99:0,593,7027 0/0:197,0:197:99:0,548,6555 0/0:213,0:213:99:0,554,6701 0/0:161,0:161:99:0,415,4973 0/0:183,1:184:99:0,454,5899 0/0:101,0:101:99:0,274,3060 0/0:106,0:106:99:0,283,3198 0/0:88,0:88:99:0,229,2569 0/0:97,0:97:99:0,259,2859 0/0:93,0:93:99:0,250,2774 0/1:46,44:90:99:1248,0,1198 0/1:123,126:250:99:3417,0,2727 1/1:0,75:75:99:2550,214,0 0/0:96,0:96:99:0,259,2889 0/0:101,0:101:99:0,259,2902 0/0:192,0:192:99:0,502,5556 0/0:192,0:192:99:0,499,5656 0/0:204,0:204:99:0,547,6042 0/0:129,0:129:99:0,340,3786 0/0:248,0:248:99:0,656,7957 0/0:178,0:178:99:0,445,5499 0/0:219,1:220:99:0,556,7135 0/0:163,0:163:99:0,424,5159 0/0:77,0:77:99:0,207,2295 0/0:92,0:92:99:0,250,2731 0/0:66,0:67:99:0,180,2002 0/1:61,45:106:99:1208,0,1471 0/1:44,34:78:99:1029,0,1106 0/0:214,0:214:99:0,553,6305 0/0:148,0:148:99:0,385,4422 0/0:98,0:98:99:0,259,2886 0/0:90,0:90:99:0,250,2752 0/1:54,52:106:99:1510,0,1375 0/1:99,106:206:99:2792,0,2425 0/1:48,45:93:99:1173,0,1231 0/1:59,55:114:99:1633,0,1494 0/0:110,0:110:99:0,307,3352 0/1:43,37:80:99:1078,0,1054 0/0:102,0:102:99:0,283,3091 10 72326400 . G A 2113.35 . 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G T 5.63 . 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A G 7702.40 . 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C T 48870.04 . 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G T 4100.94 . 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G A 817.48 . 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A G 16539.25 . 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G A 37764.13 . 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G C 2115.42 . 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G C 1499.50 . 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C T 541.18 . 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G A 3891.52 . 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G C 4929.24 . 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G A 18458.98 . 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G A 885.72 . 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G A 18536.60 . 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A C 135146.54 . 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A G 6061.41 . 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G A 7714.14 . 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G A 19311.72 . AC=20;AF=0.238;AN=84;BaseQRankSum=13.693;DP=2464;Dels=0.00;FS=1.583;HRun=0;HaplotypeScore=2.0376;InbreedingCoeff=-0.0500;MQ=58.98;MQ0=0;MQRankSum=-0.320;QD=17.15;ReadPosRankSum=0.467 GT:AD:DP:GQ:PL 0/1:22,19:41:99:486,0,601 0/0:51,0:51:99:0,135,1550 0/0:40,0:40:99:0,108,1246 0/0:85,0:85:99:0,232,2750 0/0:77,0:77:99:0,220,2636 0/1:33,30:63:99:854,0,1047 0/1:29,25:54:99:719,0,843 0/0:49,0:49:99:0,138,1674 0/0:41,1:42:85.54:0,86,1343 0/0:42,0:42:99:0,111,1285 0/0:41,0:41:99:0,114,1316 0/1:24,20:44:99:528,0,600 0/0:48,0:48:99:0,135,1514 0/1:16,20:36:99:580,0,377 1/1:0,170:170:99:5438,445,0 0/1:32,26:58:99:748,0,870 1/1:0,56:56:99:1930,156,0 0/0:48,0:48:99:0,129,1511 0/0:89,0:89:99:0,235,2644 0/0:96,0:97:99:0,274,3071 0/1:39,53:92:99:1506,0,901 0/0:59,0:60:99:0,168,1921 0/0:86,0:86:99:0,244,2952 0/0:39,0:39:99:0,108,1277 0/0:56,0:57:99:0,156,1868 0/0:43,0:43:99:0,117,1392 0/0:48,0:48:99:0,135,1574 0/1:28,26:54:99:719,0,753 0/0:38,0:38:99:0,102,1184 0/1:29,23:52:99:636,0,796 0/1:17,11:28:99:326,0,433 0/1:45,37:82:99:1001,0,1239 0/0:66,0:66:99:0,183,2061 0/1:27,30:57:99:815,0,692 0/1:32,29:61:99:837,0,816 0/1:25,15:40:99:379,0,680 0/1:44,40:85:99:1075,0,1142 0/0:52,0:52:99:0,138,1573 0/1:27,26:53:99:735,0,711 0/0:49,0:50:99:0,132,1529 0/0:37,0:37:99:0,105,1176 0/0:52,0:52:99:0,141,1584 10 73571765 . T C 8102.50 . 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T C 11.04 . 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T C 73.66 . AC=7;AF=0.117;AN=60;BaseQRankSum=-4.413;DP=82;Dels=0.00;FS=58.816;HRun=2;HaplotypeScore=0.0316;InbreedingCoeff=-0.1191;MQ=58.12;MQ0=0;MQRankSum=1.347;QD=4.09;ReadPosRankSum=-2.925 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:31,3,0 0/0:4,0:4:12.04:0,12,147 0/0:2,0:2:6.02:0,6,72 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,37 ./. ./. ./. ./. 0/1:1,1:2:27.42:27,0,32 0/0:1,0:1:3.01:0,3,36 0/1:1,1:2:25.53:26,0,31 0/0:3,1:4:8.52:0,9,82 ./. 0/0:6,0:6:18.06:0,18,228 0/0:1,0:1:3.01:0,3,37 0/1:2,1:3:20.60:21,0,66 0/0:1,0:1:3.01:0,3,39 0/0:3,1:4:6.02:0,6,73 0/0:3,0:3:6.02:0,6,66 0/0:1,1:2:3.01:0,3,33 0/0:1,1:2:3.01:0,3,38 ./. ./. ./. ./. 0/1:3,1:4:10.66:11,0,102 0/0:2,1:3:3.89:0,4,29 ./. 0/0:1,0:1:2.99:0,3,23 0/0:1,0:1:3.01:0,3,35 0/0:2,0:2:3.01:0,3,37 0/0:1,1:2:3.01:0,3,38 0/0:4,0:4:9.03:0,9,115 ./. ./. 0/0:2,0:2:6.02:0,6,73 0/0:2,0:2:3.01:0,3,33 0/1:3,3:6:47.83:48,0,63 0/0:3,0:3:9.03:0,9,110 0/0:5,2:7:11.63:0,12,121 0/0:3,0:3:9.03:0,9,114 10 73822615 . T C 255.84 . 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G T 469.75 . 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C T 1063.97 . 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C T 1164.10 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.325;DP=2411;Dels=0.00;FS=5.287;HRun=1;HaplotypeScore=0.6632;InbreedingCoeff=-0.0244;MQ=59.59;MQ0=0;MQRankSum=-0.146;QD=11.88;ReadPosRankSum=-1.511 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,111,1414 0/0:30,0:30:81.25:0,81,1036 0/0:35,0:35:96.30:0,96,1231 0/0:112,0:112:99:0,319,4238 0/0:95,0:95:99:0,262,3516 0/0:92,0:92:99:0,250,3340 0/0:91,0:93:99:0,256,3430 0/0:96,0:96:99:0,262,3544 0/0:45,0:45:99:0,126,1605 0/0:36,0:36:99:0,105,1310 0/0:36,0:36:96.31:0,96,1232 0/0:47,0:47:99:0,135,1670 0/0:41,0:41:99:0,117,1458 0/0:34,0:34:96.30:0,96,1211 0/0:139,0:139:99:0,352,4498 0/0:29,0:29:84.27:0,84,1065 0/0:56,0:56:99:0,159,2005 0/0:42,0:43:99:0,123,1485 0/0:68,0:68:99:0,190,2399 0/0:66,0:66:99:0,181,2277 0/0:74,0:74:99:0,196,2444 0/0:55,0:55:99:0,147,1858 0/0:99,0:99:99:0,280,3762 0/0:80,0:80:99:0,229,3039 0/0:85,0:85:99:0,232,3096 0/0:84,0:84:99:0,232,3105 0/0:27,0:27:75.22:0,75,925 0/0:38,0:38:99:0,105,1306 0/0:45,0:45:99:0,129,1599 0/0:44,0:44:99:0,126,1560 0/0:32,0:32:90.28:0,90,1128 0/0:66,0:66:99:0,184,2333 0/0:44,0:44:99:0,126,1608 0/0:44,0:44:99:0,129,1620 0/0:45,0:45:99:0,126,1615 0/0:42,0:42:99:0,120,1535 0/1:33,24:58:99:627,0,919 0/1:20,20:40:99:600,0,566 0/0:33,0:33:93.29:0,93,1190 0/0:44,0:44:99:0,126,1587 0/0:57,0:57:99:0,159,2025 0/0:40,0:40:99:0,102,1310 10 74886544 . A G 5307.54 . 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T C 6566.52 . AC=10;AF=0.119;AN=84;BaseQRankSum=11.005;DP=2334;Dels=0.00;FS=3.528;HRun=1;HaplotypeScore=1.0669;InbreedingCoeff=0.0919;MQ=59.16;MQ0=0;MQRankSum=0.456;QD=15.03;ReadPosRankSum=0.153 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,102,1286 0/0:54,0:54:99:0,141,1728 0/0:47,0:47:99:0,123,1514 0/0:112,0:112:99:0,289,3578 0/0:88,0:88:99:0,235,2928 0/1:44,35:79:99:984,0,1341 0/0:87,0:87:99:0,229,2873 0/1:40,45:85:99:1402,0,1059 0/1:19,21:40:99:637,0,527 0/1:14,17:31:99:445,0,380 0/0:41,0:41:99:0,120,1429 0/0:35,0:35:99:0,99,1180 0/0:39,0:39:99:0,111,1332 0/1:20,11:31:99:326,0,566 0/0:121,1:122:99:0,298,3789 0/0:24,0:24:66.20:0,66,803 0/0:45,1:46:99:0,123,1490 0/0:42,0:42:99:0,108,1306 0/0:69,0:69:99:0,166,2072 0/0:55,0:55:99:0,147,1806 0/0:62,0:62:99:0,153,1887 0/0:33,0:33:90.27:0,90,1085 0/0:120,0:120:99:0,322,3967 0/0:78,0:78:99:0,208,2548 0/0:97,0:97:99:0,262,3209 0/0:80,0:81:99:0,205,2527 0/0:28,0:28:84.25:0,84,991 0/0:49,0:49:99:0,132,1597 0/0:43,0:43:99:0,111,1348 0/0:44,0:44:99:0,111,1374 0/0:37,0:37:90.28:0,90,1118 0/0:63,0:63:99:0,166,2034 0/0:39,0:39:99:0,102,1258 0/0:36,0:36:99:0,99,1201 0/0:41,1:42:84.66:0,85,1303 0/0:50,0:50:99:0,135,1643 0/1:26,26:52:99:702,0,683 0/1:25,16:41:99:431,0,687 0/0:53,0:53:99:0,135,1654 0/1:26,24:50:99:662,0,668 0/0:38,0:38:99:0,105,1245 1/1:0,28:28:78.24:977,78,0 10 74894526 . A C 4797.06 . 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G A 7127.89 . AC=10;AF=0.119;AN=84;BaseQRankSum=-21.348;DP=3102;Dels=0.00;FS=14.045;HRun=0;HaplotypeScore=1.1323;InbreedingCoeff=0.0919;MQ=59.38;MQ0=0;MQRankSum=-0.068;QD=11.42;ReadPosRankSum=-0.145 GT:AD:DP:GQ:PL 0/0:61,0:61:99:0,172,2176 0/0:51,0:51:99:0,135,1738 0/0:46,0:46:99:0,129,1631 0/0:119,0:119:99:0,319,4319 0/0:115,0:115:99:0,310,4170 0/1:77,38:115:99:956,0,2353 0/0:106,0:106:99:0,283,3851 0/1:65,38:103:99:970,0,2081 0/1:37,35:73:99:915,0,1078 0/1:36,20:56:99:501,0,997 0/0:60,0:61:99:0,156,2010 0/0:62,0:62:99:0,172,2182 0/0:55,0:55:99:0,147,1885 0/1:40,30:70:99:791,0,1246 0/0:208,0:208:99:0,518,6650 0/0:35,0:35:93.28:0,93,1151 0/0:60,0:60:99:0,172,2188 0/0:51,0:51:99:0,144,1854 0/0:80,0:80:99:0,202,2579 0/0:97,0:97:99:0,232,3035 0/0:91,0:92:99:0,229,2945 0/0:50,0:50:99:0,129,1676 0/0:139,0:139:99:0,376,5160 0/0:114,0:114:99:0,310,4209 0/0:97,0:97:99:0,268,3644 0/0:76,0:76:99:0,208,2840 0/0:61,0:61:99:0,175,2225 0/0:47,0:47:99:0,129,1627 0/0:60,0:60:99:0,166,2116 0/0:68,0:68:99:0,184,2355 0/0:53,0:53:99:0,147,1901 0/0:87,0:87:99:0,220,2850 0/0:58,0:58:99:0,147,1899 0/0:50,0:50:99:0,138,1756 0/0:58,0:58:99:0,160,2043 0/0:61,0:61:99:0,169,2131 0/1:44,25:69:99:599,0,1262 0/1:26,26:52:99:717,0,779 0/0:47,0:47:99:0,135,1700 0/1:31,15:46:99:383,0,993 0/0:53,0:53:99:0,147,1876 1/1:0,40:40:99:1296,108,0 10 75147454 . T C 6453.89 . AC=2;AF=0.024;AN=84;BaseQRankSum=19.690;DP=4695;DS;Dels=0.00;FS=7.172;HRun=0;HaplotypeScore=1.8370;InbreedingCoeff=-0.0244;MQ=57.39;MQ0=0;MQRankSum=1.231;QD=14.67;ReadPosRankSum=-1.012 GT:AD:DP:GQ:PL 0/0:63,0:63:99:0,174,2076 0/0:77,0:77:99:0,211,2500 0/0:70,0:70:99:0,202,2380 0/1:98,98:196:99:2880,0,2718 0/0:178,1:179:99:0,471,6035 0/0:182,0:182:99:0,506,6228 0/0:147,0:147:99:0,415,5077 0/0:123,0:123:99:0,346,4112 0/0:103,0:103:99:0,289,3413 0/0:50,0:50:99:0,144,1684 0/0:78,0:78:99:0,214,2566 0/0:77,0:77:99:0,217,2565 0/0:54,0:54:99:0,156,1835 0/0:81,0:81:99:0,232,2729 0/0:250,0:250:99:0,695,8205 0/0:56,0:56:99:0,168,1972 0/0:82,0:82:99:0,229,2731 0/0:71,0:71:99:0,211,2462 0/0:164,0:165:99:0,460,5493 0/0:170,0:170:99:0,487,5785 0/0:159,0:159:99:0,448,5369 0/0:93,0:93:99:0,250,2983 0/1:126,118:244:99:3574,0,3482 0/0:150,0:151:99:0,427,5176 0/0:165,0:165:99:0,457,5548 0/0:147,0:147:99:0,406,4913 0/0:62,0:62:99:0,174,2063 0/0:102,0:102:99:0,283,3364 0/0:64,0:64:99:0,193,2248 0/0:74,0:74:99:0,202,2427 0/0:78,0:78:99:0,229,2697 0/0:154,0:154:99:0,418,5042 0/0:77,0:77:99:0,220,2592 0/0:86,0:86:99:0,238,2830 0/0:92,2:94:99:0,214,2993 0/0:90,0:90:99:0,253,3023 0/0:142,1:143:99:0,380,4672 0/0:110,0:110:99:0,298,3538 0/0:90,0:90:99:0,259,3063 0/0:80,0:81:99:0,229,2680 0/0:68,0:68:99:0,190,2237 0/0:89,0:89:99:0,244,2942 10 75158036 . G T 369.31 . AC=20;AF=0.238;AN=84;BaseQRankSum=-7.328;DP=1004;Dels=0.00;FS=659.986;HRun=1;HaplotypeScore=0.9213;InbreedingCoeff=-0.3287;MQ=59.52;MQ0=0;MQRankSum=2.126;QD=0.84;ReadPosRankSum=-12.284 GT:AD:DP:GQ:PL 0/0:22,0:22:60.16:0,60,728 0/0:13,1:14:4.33:0,4,439 0/0:14,0:14:36.09:0,36,432 0/0:32,5:37:0.37:0,0,1031 0/1:23,9:33:11.19:11,0,641 0/0:18,4:22:21.47:0,21,564 0/0:21,3:24:36.54:0,37,735 0/1:19,8:27:11.38:11,0,626 0/0:16,3:19:48.15:0,48,605 0/0:18,5:23:21.03:0,21,611 0/0:17,1:18:16.37:0,16,602 0/1:18,4:22:13.21:13,0,554 0/1:11,6:17:67.42:67,0,349 0/1:11,2:13:29.58:30,0,379 0/0:45,10:55:59.10:0,59,1455 0/1:19,4:23:11.05:11,0,598 0/1:23,5:28:27.38:27,0,765 0/0:23,3:26:40.56:0,41,788 0/0:17,2:19:45.12:0,45,508 0/0:23,6:29:1.74:0,2,749 0/0:25,2:27:63.18:0,63,778 0/0:16,2:18:14.17:0,14,548 0/0:35,7:42:58.03:0,58,1159 0/0:25,1:26:72.20:0,72,873 0/0:29,5:34:10.87:0,11,957 0/0:16,4:20:18.65:0,19,567 0/0:11,4:15:2.60:1,0,380 0/1:15,5:20:76.58:77,0,472 0/1:20,6:26:2.73:3,0,604 0/1:11,5:16:63.54:64,0,359 0/1:8,2:10:4.57:5,0,248 0/0:26,5:31:42.98:0,43,889 0/1:17,4:21:9.94:10,0,520 0/1:25,3:28:19.56:20,0,781 0/1:18,2:20:13.75:14,0,587 0/1:12,4:16:29.58:30,0,382 0/0:26,4:30:33.05:0,33,726 0/1:18,2:20:13.60:14,0,542 0/1:18,3:21:15.95:16,0,547 0/1:26,8:34:24.51:25,0,785 0/1:15,3:18:55.73:56,0,443 0/1:21,5:26:25.41:25,0,676 10 75158036 . G GT 1840.37 . AC=31;AF=0.369;AN=84;BaseQRankSum=16.451;DP=1162;FS=1356.646;HRun=1;HaplotypeScore=119.7083;InbreedingCoeff=-0.5820;MQ=58.26;MQ0=0;MQRankSum=3.489;QD=1.97;ReadPosRankSum=-19.392 GT:AD:DP:GQ:PL 0/1:28,0:28:12.45:12,0,569 0/0:15,0:15:5.67:0,6,389 0/0:15,0:15:7.25:0,7,436 0/1:36,12:48:90.97:91,0,1013 0/1:27,23:50:99:370,0,634 0/1:23,5:28:90.32:90,0,547 0/1:24,5:27:17.42:17,0,653 0/1:25,5:30:99:183,0,548 0/1:23,0:23:34.07:34,0,539 0/1:30,0:30:11.91:12,0,545 0/0:21,0:21:20.36:0,20,615 0/0:26,0:26:9.08:0,9,644 0/1:18,0:18:50.67:51,0,351 0/1:15,0:15:52.04:52,0,340 0/1:61,1:62:69.40:69,0,1382 0/1:24,0:24:2.56:3,0,619 0/1:31,0:31:20.47:20,0,710 0/1:27,0:27:15.48:15,0,702 0/1:22,5:27:16.59:17,0,508 0/1:30,2:32:8.01:8,0,737 0/1:25,5:30:34.51:35,0,733 0/0:19,0:19:15.30:0,15,537 0/1:40,12:52:99:255,0,1026 0/1:26,5:31:2.05:0,2,822 0/1:39,7:45:99:124,0,801 0/1:20,9:29:99:165,0,505 0/0:16,0:16:3.27:0,3,396 0/1:24,0:24:99:99,0,478 0/0:26,0:26:3.77:0,4,615 0/1:18,0:18:78.43:78,0,383 0/0:12,0:12:4.48:0,4,289 0/0:34,0:34:20.88:0,21,889 0/0:21,0:21:2.75:0,3,530 0/1:28,0:28:1.35:1,0,835 0/1:19,0:19:11.50:12,0,563 0/1:15,0:15:21.63:22,0,354 0/1:30,5:35:25.18:25,0,810 0/0:22,0:22:11.26:0,11,601 0/1:22,0:22:30.45:30,0,618 0/1:36,0:36:41.30:41,0,816 0/1:20,0:20:71.45:71,0,440 0/1:28,0:28:8.93:9,0,674 10 75526136 . C T 186.34 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.252;DP=2290;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.2568;InbreedingCoeff=-0.0120;MQ=59.18;MQ0=0;MQRankSum=1.127;QD=8.10;ReadPosRankSum=-0.327 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,132,1604 0/0:38,0:38:99:0,105,1182 0/0:39,0:39:99:0,114,1295 0/0:94,0:96:99:0,262,3284 0/0:109,0:109:99:0,286,3666 0/0:71,0:71:99:0,181,2370 0/0:67,0:67:99:0,178,2287 0/0:66,0:66:99:0,175,2224 0/0:32,0:32:96.25:0,96,1063 0/0:44,0:44:99:0,111,1322 0/0:34,0:34:96.27:0,96,1129 0/0:46,0:46:99:0,132,1541 0/0:30,0:30:90.23:0,90,1021 0/0:42,0:42:99:0,105,1232 0/0:150,0:150:99:0,400,4809 0/0:43,0:43:99:0,123,1445 0/0:40,0:40:99:0,114,1320 0/0:42,0:42:99:0,114,1335 0/0:58,0:58:99:0,156,1847 0/0:79,0:79:99:0,211,2498 0/0:92,0:92:99:0,241,2837 0/0:41,0:41:99:0,114,1349 0/0:113,0:113:99:0,295,3800 0/0:51,0:51:99:0,138,1795 0/0:61,0:61:99:0,169,2165 0/0:59,0:60:99:0,153,1986 0/0:37,0:37:90.21:0,90,1038 0/0:45,0:45:99:0,132,1561 0/1:15,8:23:99:233,0,448 0/0:37,0:37:99:0,105,1238 0/0:33,0:33:84.23:0,84,1007 0/0:66,0:67:99:0,172,2086 0/0:40,0:40:99:0,108,1297 0/0:45,0:45:99:0,132,1574 0/0:45,0:45:99:0,126,1436 0/0:47,0:47:99:0,132,1530 0/0:72,0:72:99:0,208,2403 0/0:35,0:35:99:0,105,1244 0/0:45,0:45:99:0,129,1537 0/0:53,0:53:99:0,144,1697 0/0:29,0:29:84.22:0,84,960 0/0:44,0:44:99:0,117,1378 10 75550769 . G C 109.02 . AC=4;AF=0.048;AN=84;BaseQRankSum=-15.919;DP=2386;Dels=0.00;FS=1044.987;HRun=2;HaplotypeScore=0.9416;InbreedingCoeff=-0.0815;MQ=59.07;MQ0=0;MQRankSum=1.533;QD=0.69;ReadPosRankSum=-17.755 GT:AD:DP:GQ:PL 0/0:38,13:51:99:0,100,1089 0/0:32,10:42:15.80:0,16,679 0/0:25,8:33:1.41:4,0,542 0/0:96,40:137:89.23:0,89,2601 0/0:85,41:126:1.65:3,0,2413 0/0:86,32:119:99:0,114,2354 0/0:48,16:64:84.17:0,84,1301 0/0:69,19:88:99:0,148,1962 0/0:27,11:39:48.56:0,49,779 0/0:23,2:25:38.44:0,38,588 0/0:18,12:30:0.60:0,1,386 0/1:27,9:36:64.94:65,0,585 0/0:33,10:43:23.37:0,23,761 0/1:29,14:43:90.91:91,0,653 0/0:74,21:95:20.09:0,20,1795 0/0:33,14:47:9.72:0,10,814 0/0:33,10:43:2.66:0,3,754 0/0:37,4:41:91.41:0,91,940 0/0:44,12:58:84.99:0,85,1152 0/0:52,14:67:86.86:0,87,1243 0/0:49,11:60:23.86:0,24,1082 0/1:33,12:45:16.25:16,0,813 0/0:97,48:145:81.74:0,82,2709 0/0:66,22:88:99:0,118,1641 0/0:72,22:94:99:0,127,1960 0/0:85,20:105:99:0,127,2263 0/0:32,5:37:53.49:0,53,785 0/0:30,10:41:35.77:0,36,623 0/0:25,5:30:34.21:0,34,698 0/0:29,7:36:80.51:0,81,814 0/0:26,6:32:54.73:0,55,547 0/0:36,10:46:43.86:0,44,910 0/0:45,13:58:69.06:0,69,1028 0/0:32,4:36:85.45:0,85,906 0/0:33,5:39:31.29:0,31,662 0/0:31,7:39:80.10:0,80,884 0/0:45,11:56:50.06:0,50,1109 0/0:30,10:40:67.14:0,67,796 0/1:28,7:35:19.46:19,0,609 0/0:26,9:35:33.32:0,33,606 0/0:27,2:29:29.05:0,29,577 0/0:28,5:33:69.14:0,69,738 10 75574874 . T G 549.28 . AC=20;AF=0.238;AN=84;BaseQRankSum=-16.012;DP=1178;Dels=0.00;FS=355.799;HRun=2;HaplotypeScore=1.2886;InbreedingCoeff=-0.3316;MQ=58.26;MQ0=0;MQRankSum=3.975;QD=1.02;ReadPosRankSum=-8.575 GT:AD:DP:GQ:PL 0/0:12,7:19:2.99:0,0,348 0/0:14,4:18:23.44:0,23,472 0/1:9,14:23:99:107,0,250 0/1:37,27:64:27.80:28,0,1107 0/0:35,22:57:20.25:0,20,967 0/0:18,12:30:8.16:0,8,474 0/1:10,13:23:74.21:74,0,295 0/0:19,18:37:0.10:0,0,556 0/1:13,8:21:18.20:18,0,321 0/1:11,7:18:13.80:14,0,232 0/1:14,13:27:2.29:2,0,407 0/1:13,11:24:34.74:35,0,408 0/0:10,9:19:2.50:0,2,308 0/1:17,13:30:10.42:10,0,534 0/1:31,24:55:33.99:34,0,837 0/0:15,5:20:45.11:0,45,516 0/0:12,9:21:33.05:0,33,367 0/0:12,15:27:28.66:0,29,294 0/1:18,9:27:34.65:35,0,517 0/0:43,11:54:72.14:0,72,1360 0/1:18,9:27:7.10:7,0,553 0/0:20,5:26:25.57:0,26,571 0/0:31,22:53:13.07:0,13,887 0/0:11,8:20:3.47:0,3,313 0/0:22,17:39:35.26:0,35,644 0/1:14,15:29:12.23:12,0,384 0/0:7,10:17:18.04:0,18,201 0/1:13,12:25:14.02:14,0,390 0/1:11,5:16:5.49:5,0,306 0/0:14,8:23:12.50:0,12,433 0/1:10,7:17:62.84:63,0,298 0/0:17,10:27:48.07:0,48,526 0/0:18,12:30:54.15:0,54,616 0/0:14,10:24:12.58:0,13,430 0/1:10,9:19:24.97:25,0,261 0/1:19,8:27:1.03:1,0,539 0/1:14,10:24:92.50:92,0,433 0/0:18,11:29:51.59:0,52,569 0/0:10,8:18:2.38:0,2,261 0/1:13,13:26:71.33:71,0,323 0/1:12,7:19:53.64:54,0,303 0/0:18,10:29:54.15:0,54,630 10 75854055 . G C 42.42 . AC=5;AF=0.060;AN=84;BaseQRankSum=-10.699;DP=1542;Dels=0.00;FS=449.420;HRun=1;HaplotypeScore=0.8669;InbreedingCoeff=-0.0951;MQ=58.98;MQ0=0;MQRankSum=-0.262;QD=0.24;ReadPosRankSum=-8.174 GT:AD:DP:GQ:PL 0/0:21,8:29:1.49:4,0,603 0/0:33,7:40:72.22:0,72,886 0/0:16,9:25:35.13:0,35,391 0/0:39,28:67:11.57:0,12,1108 0/1:49,27:76:29.21:29,0,1276 0/0:26,12:38:50.54:0,51,892 0/0:32,10:42:38.06:0,38,837 0/0:37,14:51:52:0,52,1066 0/0:21,7:28:60.19:0,60,754 0/0:21,4:27:54.17:0,54,667 0/0:25,3:29:60.18:0,60,737 0/0:28,5:33:44.78:0,45,855 0/0:21,3:24:26.75:0,27,666 0/1:17,9:26:46.44:46,0,452 0/0:69,27:96:5.39:0,5,2012 0/0:20,14:34:2.49:1,0,509 0/0:22,5:27:54.62:0,55,647 0/0:18,6:24:45.13:0,45,550 0/0:32,12:44:54.60:0,55,924 0/0:46,10:56:69.34:0,69,1219 0/0:27,6:33:38.60:0,39,774 0/0:23,6:29:48.15:0,48,589 0/0:41,21:62:1.48:4,0,1281 0/0:34,7:41:93.29:0,93,1221 0/0:38,16:55:58.73:0,59,1102 0/0:24,8:32:56.51:0,57,682 0/1:17,8:25:19.62:20,0,461 0/0:26,2:28:66.19:0,66,777 0/1:20,11:31:22.21:22,0,647 0/0:20,5:25:45.14:0,45,557 0/0:30,7:37:38.60:0,39,764 0/0:40,11:51:95.49:0,95,1177 0/0:24,4:29:22.82:0,23,642 0/0:19,7:26:15.90:0,16,555 0/0:17,10:27:36.08:0,36,415 0/0:25,13:38:36.55:0,37,725 0/0:23,2:25:54.16:0,54,663 0/0:20,3:23:54.16:0,54,660 0/0:22,10:32:30.69:0,31,716 0/1:15,4:19:17.08:17,0,371 0/0:30,8:38:33.53:0,34,663 0/0:16,4:20:16.49:0,16,485 10 75855541 . C T 1536.37 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.732;DP=4282;DS;Dels=0.00;FS=1.676;HRun=0;HaplotypeScore=2.9885;InbreedingCoeff=-0.0244;MQ=59.36;MQ0=0;MQRankSum=0.550;QD=13.48;ReadPosRankSum=-1.464 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,172,2132 0/0:60,0:60:99:0,153,1916 0/0:55,1:56:99:0,114,1753 0/0:244,1:245:99:0,620,8458 0/0:250,0:250:99:0,671,8695 0/0:227,0:227:99:0,572,7532 0/0:187,0:187:99:0,488,6437 0/0:182,0:183:99:0,466,6119 0/1:28,34:62:99:935,0,782 0/1:28,24:52:99:664,0,763 0/0:54,0:54:99:0,144,1788 0/0:73,0:73:99:0,199,2435 0/0:55,0:55:99:0,138,1732 0/0:64,0:64:99:0,174,2140 0/0:216,0:216:99:0,554,6781 0/0:69,0:69:99:0,187,2302 0/0:61,0:62:99:0,159,1981 0/0:79,0:79:99:0,220,2646 0/0:116,0:116:99:0,304,3608 0/0:111,0:113:99:0,292,3612 0/0:114,0:114:99:0,283,3409 0/0:76,0:76:99:0,202,2513 0/0:245,0:245:99:0,650,8598 0/0:154,0:154:99:0,412,5450 0/0:168,0:168:99:0,436,5782 0/0:161,0:161:99:0,415,5457 0/0:55,0:55:99:0,138,1707 0/0:68,0:69:99:0,187,2285 0/0:55,0:55:99:0,153,1869 0/0:59,0:59:99:0,165,2003 0/0:57,0:57:99:0,147,1826 0/0:130,0:130:99:0,331,4167 0/0:78,0:78:99:0,208,2612 0/0:71,0:71:99:0,193,2338 0/0:60,0:60:99:0,162,2022 0/0:62,0:62:99:0,169,2095 0/0:108,0:108:99:0,280,3395 0/0:58,0:58:99:0,165,2022 0/0:51,0:51:99:0,138,1692 0/0:64,0:64:99:0,175,2153 0/0:42,0:42:99:0,120,1473 0/0:57,0:58:99:0,150,1870 10 75868853 . A C 488.93 . AC=12;AF=0.143;AN=84;BaseQRankSum=-22.134;DP=2475;DS;Dels=0.00;FS=768.414;HRun=2;HaplotypeScore=1.6540;InbreedingCoeff=-0.1781;MQ=59.01;MQ0=0;MQRankSum=-0.989;QD=0.64;ReadPosRankSum=-12.863 GT:AD:DP:GQ:PL 0/1:33,15:48:45.54:46,0,949 0/0:36,19:55:72.18:0,72,1198 0/0:26,18:44:50.56:0,51,879 0/0:62,31:93:73.27:0,73,1998 0/0:44,38:82:47.69:0,48,1571 0/0:43,30:73:71.20:0,71,1524 0/0:33,18:51:59.99:0,60,1173 0/0:39,22:61:72.83:0,73,1249 0/0:28,17:45:54.75:0,55,970 0/0:27,22:49:46.42:0,46,894 0/0:28,17:45:12.32:0,12,771 0/0:27,17:44:46.74:0,47,891 0/1:31,17:48:29.27:29,0,825 0/0:30,16:46:57.74:0,58,1006 0/1:95,85:180:99:154,0,2936 0/1:27,24:51:29.13:29,0,839 0/0:41,21:62:30.82:0,31,1321 0/0:35,25:60:29.37:0,29,1175 0/1:38,28:66:99:149,0,1230 0/0:51,30:81:31.49:0,31,1523 0/0:32,23:55:4.11:0,4,880 0/0:21,21:42:27.45:0,27,568 0/0:53,37:90:61.94:0,62,1820 0/0:29,20:49:51.69:0,52,1034 0/0:41,29:70:60.57:0,61,1421 0/0:33,16:49:68.09:0,68,1175 0/0:19,9:28:1.88:0,2,536 0/0:31,23:54:61.71:0,62,1026 0/0:27,13:40:75.21:0,75,903 0/0:32,29:61:30.91:0,31,1046 0/1:22,25:47:11.57:12,0,730 0/0:54,50:104:73.31:0,73,1736 0/1:28,21:50:20.27:20,0,852 0/1:26,25:51:21.74:22,0,732 0/0:32,20:52:54.98:0,55,995 0/1:33,23:56:16.76:17,0,1081 0/1:43,24:67:33.99:34,0,1240 0/0:26,17:43:11.15:0,11,818 0/1:25,25:50:39.01:39,0,796 0/0:32,14:46:56.31:0,56,979 0/0:23,18:41:45.39:0,45,731 0/1:26,20:46:80.88:81,0,723 10 75896461 . G T 9.90 . AC=3;AF=0.036;AN=84;BaseQRankSum=-12.010;DP=1896;Dels=0.00;FS=219.566;HRun=1;HaplotypeScore=1.1399;InbreedingCoeff=-0.0748;MQ=59.35;MQ0=0;MQRankSum=0.479;QD=0.07;ReadPosRankSum=-7.443 GT:AD:DP:GQ:PL 0/0:39,5:44:93.26:0,93,1117 0/0:39,6:45:47.93:0,48,1185 0/0:30,2:32:69.19:0,69,858 0/0:45,12:57:56.11:0,56,1181 0/0:53,8:61:80.31:0,80,1464 0/0:66,3:69:99:0,147,1773 0/0:33,5:38:11.73:0,12,576 0/0:51,8:59:93.59:0,94,1373 0/0:36,2:38:58.88:0,59,1050 0/0:30,5:35:1.03:6,0,723 0/0:31,5:36:72.20:0,72,861 0/0:40,6:46:25.27:0,25,859 0/1:35,7:42:42.83:43,0,914 0/0:28,5:33:72.14:0,72,835 0/0:97,14:111:99:0,119,2619 0/0:25,2:28:22.38:0,22,661 0/0:33,4:37:58.56:0,59,966 0/1:23,6:29:23.43:23,0,600 0/0:46,9:55:77.86:0,78,1266 0/0:46,5:51:54.69:0,55,1266 0/0:41,10:51:52.86:0,53,1076 0/0:25,4:29:9.34:0,9,695 0/0:57,15:72:13.70:0,14,1319 0/1:56,10:66:8.58:9,0,1305 0/0:43,6:49:85.51:0,86,1179 0/0:51,9:60:80.62:0,81,1261 0/0:22,3:25:7.79:0,8,600 0/0:37,5:42:58.77:0,59,922 0/0:27,3:30:66.18:0,66,810 0/0:34,4:38:81.21:0,81,960 0/0:31,5:36:46.88:0,47,922 0/0:46,8:54:77.69:0,78,1242 0/0:31,5:36:56.71:0,57,988 0/0:41,5:46:53.27:0,53,1003 0/0:27,9:36:8.73:0,9,640 0/0:33,9:42:0.64:8,0,907 0/0:28,9:37:45.51:0,46,783 0/0:33,5:38:87.23:0,87,1045 0/0:36,3:39:53.29:0,53,1022 0/0:32,6:38:0.75:7,0,890 0/0:37,3:40:81.24:0,81,1015 0/0:42,4:46:93.22:0,93,1090 10 76797804 . G A 319.44 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.988;DP=1917;Dels=0.00;FS=5.829;HRun=0;HaplotypeScore=1.8667;InbreedingCoeff=-0.0120;MQ=59.27;MQ0=0;MQRankSum=-0.299;QD=10.30;ReadPosRankSum=-0.238 GT:AD:DP:GQ:PL 0/0:23,0:23:60.19:0,60,775 0/0:31,0:31:78.24:0,78,996 0/0:29,0:29:63.20:0,63,822 0/0:107,0:107:99:0,274,3705 0/0:117,0:118:99:0,304,4120 0/0:93,0:93:99:0,235,3165 0/0:50,0:50:99:0,120,1659 0/0:52,0:52:99:0,141,1880 0/0:45,0:45:99:0,108,1407 0/0:31,0:31:75.24:0,75,952 0/0:35,0:35:87.28:0,87,1121 0/0:40,0:40:99:0,99,1215 0/0:26,0:26:66.21:0,66,851 0/0:28,0:28:75.23:0,75,935 0/0:105,0:105:99:0,286,3573 0/0:30,0:31:81.24:0,81,998 0/0:30,0:30:75.24:0,75,953 0/0:30,0:30:81.25:0,81,1018 0/0:47,0:48:99:0,132,1659 0/0:60,0:60:99:0,147,1864 0/0:56,0:56:99:0,138,1762 0/0:32,0:32:81.25:0,81,1031 0/0:133,0:133:99:0,334,4517 0/0:61,0:61:99:0,160,2167 0/0:81,0:81:99:0,217,2937 0/0:55,0:55:99:0,132,1765 0/0:24,0:24:72.23:0,72,910 0/0:27,0:27:78.25:0,78,976 0/0:23,0:23:60.19:0,60,773 0/0:32,0:32:84.27:0,84,1068 0/0:34,0:34:87.24:0,87,1071 0/0:65,0:65:99:0,166,2127 0/0:26,0:26:69.22:0,69,866 0/0:22,1:23:63.20:0,63,782 0/0:21,0:21:45.14:0,45,579 0/0:27,0:27:72.21:0,72,897 0/0:39,0:39:96.28:0,96,1187 0/0:30,0:30:75.24:0,75,965 0/1:15,15:31:99:366,0,467 0/0:21,0:21:57.18:0,57,724 0/0:30,0:30:78.24:0,78,990 0/0:33,0:33:93.29:0,93,1180 10 78844418 . C T 684.66 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.656;DP=2260;Dels=0.00;FS=1.755;HRun=0;HaplotypeScore=1.0252;InbreedingCoeff=-0.0244;MQ=59.02;MQ0=1;MQRankSum=1.118;QD=9.78;ReadPosRankSum=-0.166 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,138,1652 0/0:42,0:42:99:0,117,1440 0/0:37,0:37:99:0,102,1244 0/0:104,0:104:99:0,262,3438 0/0:89,0:89:99:0,232,3062 0/0:67,0:67:99:0,175,2297 0/0:60,0:60:99:0,153,2021 0/0:58,0:58:99:0,156,2037 0/0:56,0:56:99:0,150,1848 0/0:32,0:32:84.26:0,84,1054 0/0:38,0:38:99:0,108,1300 0/1:18,14:32:99:370,0,494 0/1:25,13:38:99:377,0,666 0/0:41,0:41:99:0,111,1350 0/0:148,0:148:99:0,370,4525 0/0:42,0:42:99:0,114,1382 0/0:39,0:39:99:0,99,1242 0/0:40,0:40:99:0,114,1383 0/0:79,0:79:99:0,205,2487 0/0:66,0:66:99:0,156,1949 0/0:51,0:52:99:0,141,1744 0/0:33,0:33:84.25:0,84,1059 0/0:109,0:109:99:0,268,3583 0/0:55,0:55:99:0,138,1879 0/0:68,0:68:99:0,184,2431 0/0:57,0:57:99:0,147,1967 0/0:32,0:32:81.24:0,81,1004 0/0:43,0:43:99:0,117,1439 0/0:45,0:45:99:0,126,1555 0/0:37,0:37:90.24:0,90,1089 0/0:43,0:43:99:0,126,1565 0/0:44,0:44:99:0,111,1370 0/0:47,0:48:99:0,114,1462 0/0:57,0:57:99:0,156,1912 0/0:54,0:54:99:0,150,1834 0/0:57,0:57:99:0,153,1855 0/0:51,0:51:99:0,141,1747 0/0:45,0:45:99:0,132,1604 0/0:34,0:34:96.28:0,96,1153 0/0:51,0:51:99:0,132,1612 0/0:46,0:46:99:0,129,1576 0/0:38,0:38:99:0,108,1340 10 78944590 . G A 45453.16 . AC=24;AF=0.286;AN=84;BaseQRankSum=18.218;DP=5596;DS;Dels=0.00;FS=2.414;HRun=2;HaplotypeScore=2.7457;InbreedingCoeff=0.1833;MQ=59.46;MQ0=0;MQRankSum=1.389;QD=18.49;ReadPosRankSum=2.701 GT:AD:DP:GQ:PL 0/0:99,0:99:99:0,268,3080 0/0:109,1:111:99:0,266,3367 0/0:133,0:133:99:0,343,4057 0/0:182,0:182:99:0,490,6039 0/1:91,72:163:99:2059,0,2619 0/0:162,2:164:99:0,408,5497 0/0:127,0:127:99:0,343,4264 0/0:146,0:146:99:0,397,4922 0/1:65,53:118:99:1509,0,1660 0/1:51,56:107:99:1622,0,1373 0/0:96,0:96:99:0,256,2968 1/1:1,107:109:99:3673,278,0 1/1:1,109:110:99:3543,261,0 0/1:37,54:91:99:1514,0,916 0/0:250,0:250:99:0,671,7890 0/0:82,0:82:99:0,229,2623 0/0:111,1:112:99:0,279,3519 0/1:67,64:131:99:1783,0,1789 0/1:98,100:198:99:2698,0,2421 0/0:210,0:210:99:0,566,6550 0/0:185,0:185:99:0,481,5675 0/0:101,2:103:99:0,207,3100 0/0:176,0:176:99:0,481,5965 0/1:74,59:133:99:1733,0,1990 1/1:0,148:148:99:5127,406,0 0/0:114,2:116:99:0,252,3888 0/0:95,0:95:99:0,259,3004 0/1:69,56:125:99:1577,0,1754 0/0:102,0:102:99:0,283,3305 0/1:68,55:123:99:1523,0,1762 0/0:98,0:98:99:0,265,3078 0/0:175,0:175:99:0,451,5269 1/1:0,120:120:99:3985,322,0 0/1:57,74:131:99:2031,0,1511 0/1:72,42:114:99:1100,0,1991 0/0:143,0:143:99:0,370,4352 0/1:86,87:173:99:2331,0,2270 1/1:3,135:138:99:4444,301,0 0/0:103,0:103:99:0,292,3308 0/0:130,0:130:99:0,373,4192 0/1:54,53:107:99:1523,0,1443 0/1:60,59:119:99:1676,0,1560 10 79566632 . G A 40750.26 . AC=31;AF=0.369;AN=84;BaseQRankSum=9.192;DP=3991;DS;Dels=0.00;FS=2.493;HRun=0;HaplotypeScore=2.3483;InbreedingCoeff=0.1309;MQ=59.11;MQ0=0;MQRankSum=-1.596;QD=18.99;ReadPosRankSum=-1.234 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2507,211,0 1/1:4,70:74:99:2241,145,0 0/1:42,25:67:99:704,0,1109 0/0:184,0:184:99:0,487,5960 0/1:77,65:142:99:1697,0,2199 0/1:57,46:103:99:1276,0,1709 0/1:43,42:85:99:1128,0,1220 0/1:61,56:117:99:1406,0,1806 0/1:32,39:71:99:1049,0,817 0/0:49,0:49:99:0,132,1506 1/1:1,57:58:99:1857,132,0 0/0:85,0:85:99:0,238,2682 0/0:57,0:57:99:0,153,1720 0/1:26,46:72:99:1240,0,633 1/1:0,205:205:99:6535,542,0 0/1:33,41:74:99:1193,0,907 0/1:31,29:60:99:833,0,817 0/0:75,0:75:99:0,217,2463 0/0:152,0:153:99:0,403,4548 0/0:188,0:188:99:0,481,5680 0/0:138,0:138:99:0,385,4353 0/0:91,0:91:99:0,244,2821 0/1:95,102:197:99:2764,0,2687 0/0:95,0:96:99:0,253,3098 0/0:114,0:114:99:0,310,3786 0/1:42,51:94:99:1509,0,1067 0/0:56,0:56:99:0,147,1657 0/1:31,34:66:99:974,0,777 0/0:60,0:60:99:0,159,1835 0/0:81,0:81:99:0,226,2490 0/0:66,0:66:99:0,183,2042 0/0:161,1:162:99:0,421,4837 0/1:56,50:107:99:1401,0,1398 0/1:40,39:79:99:1025,0,1048 0/1:28,37:65:99:1090,0,636 1/1:0,80:80:99:2703,226,0 0/0:127,1:129:99:0,297,3636 0/1:43,35:78:99:937,0,1207 0/0:61,0:61:99:0,171,1941 1/1:0,60:60:99:2016,171,0 0/1:26,28:54:99:756,0,668 1/1:1,61:62:99:1907,136,0 10 79566664 . C T 388.07 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.418;DP=3223;DS;Dels=0.00;FS=2.036;HRun=1;HaplotypeScore=3.5982;InbreedingCoeff=-0.0120;MQ=58.84;MQ0=0;MQRankSum=0.958;QD=7.32;ReadPosRankSum=-1.028 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,156,1939 0/0:69,0:69:99:0,184,2312 0/0:48,0:48:99:0,126,1568 0/0:138,0:138:99:0,361,4704 0/0:116,0:116:99:0,298,3922 0/0:81,0:81:99:0,217,2835 0/0:65,0:65:99:0,172,2246 0/0:95,0:95:99:0,247,3256 0/0:63,0:63:99:0,159,1990 0/0:42,0:42:99:0,105,1294 0/0:41,0:41:99:0,114,1403 0/0:57,0:57:99:0,147,1817 0/0:46,0:46:99:0,102,1254 0/0:60,0:60:99:0,153,1910 0/0:143,2:146:99:0,364,4629 0/1:35,18:53:99:434,0,930 0/0:60,0:60:99:0,144,1835 0/0:60,0:60:99:0,166,2065 0/0:115,0:115:99:0,295,3653 0/0:143,0:143:99:0,382,4806 0/0:113,0:114:99:0,277,3483 0/0:72,0:72:99:0,169,2114 0/0:170,0:170:99:0,427,5709 0/0:78,0:78:99:0,199,2634 0/0:95,0:95:99:0,259,3375 0/0:80,0:81:99:0,205,2715 0/0:45,0:45:99:0,114,1431 0/0:56,0:56:99:0,147,1837 0/0:56,0:56:99:0,156,1963 0/0:61,0:61:99:0,153,1935 0/0:45,1:46:93.89:0,94,1490 0/0:143,0:144:99:0,367,4611 0/0:92,0:92:99:0,235,2982 0/0:71,0:71:99:0,178,2214 0/0:50,0:50:99:0,135,1710 0/0:57,0:57:99:0,156,1930 0/0:107,0:107:99:0,271,3318 0/0:59,0:59:99:0,150,1880 0/0:60,0:60:99:0,159,1979 0/0:48,0:48:99:0,117,1446 0/0:46,0:46:99:0,120,1465 0/0:58,0:58:99:0,129,1638 10 79576772 . G A 3929.76 . 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C G 1257.17 . 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G A 989.81 . 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T C 36667.15 . AC=73;AF=0.869;AN=84;BaseQRankSum=-5.923;DP=1341;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9778;InbreedingCoeff=0.0580;MQ=58.70;MQ0=0;MQRankSum=0.159;QD=27.78;ReadPosRankSum=1.851 GT:AD:DP:GQ:PL 1/1:0,20:20:57.16:667,57,0 1/1:0,22:22:57.12:621,57,0 1/1:0,27:27:75.18:822,75,0 1/1:0,71:71:99:2297,190,0 1/1:0,66:66:99:2322,187,0 1/1:0,57:57:99:1783,141,0 0/1:23,16:39:99:379,0,696 1/1:0,43:43:99:1420,114,0 1/1:0,26:26:72.17:817,72,0 1/1:0,15:15:42.11:468,42,0 1/1:0,20:20:51.13:596,51,0 0/1:14,8:22:99:172,0,462 1/1:0,19:19:48.11:549,48,0 0/1:10,16:26:99:386,0,272 1/1:0,84:84:99:2559,220,0 1/1:0,22:22:60.16:685,60,0 1/1:0,20:20:54.14:613,54,0 1/1:0,24:24:63.14:699,63,0 1/1:0,34:34:93.24:1044,93,0 1/1:0,40:40:99:1251,105,0 0/1:25,24:49:99:521,0,731 0/1:7,15:22:99:428,0,161 1/1:0,103:104:99:3235,256,0 1/1:0,25:25:72.20:866,72,0 1/1:0,43:43:99:1405,111,0 1/1:0,39:39:99:1256,99,0 1/1:0,15:15:39.10:449,39,0 1/1:0,24:25:63.15:717,63,0 1/1:0,26:26:66.18:768,66,0 0/0:21,0:21:54.17:0,54,680 0/1:11,10:21:99:258,0,351 1/1:0,33:33:81.24:1012,81,0 0/1:11,16:28:99:441,0,226 1/1:0,23:24:66.18:758,66,0 1/1:0,18:18:51.15:596,51,0 1/1:0,18:18:54.15:618,54,0 0/1:11,15:26:99:400,0,284 1/1:0,17:17:51.13:570,51,0 0/1:12,17:29:99:446,0,347 1/1:1,18:19:17.70:524,18,0 1/1:0,22:22:51.14:598,51,0 1/1:0,20:20:57.16:649,57,0 10 79760818 . A G 3756.71 . AC=2;AF=0.024;AN=84;BaseQRankSum=11.569;DP=2751;Dels=0.00;FS=11.063;HRun=0;HaplotypeScore=1.4225;InbreedingCoeff=-0.0244;MQ=59.40;MQ0=0;MQRankSum=2.504;QD=16.70;ReadPosRankSum=2.076 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,135,1623 0/0:57,0:57:99:0,156,1883 0/0:40,0:40:99:0,117,1372 0/1:54,68:122:99:2066,0,1468 0/0:88,0:88:99:0,250,3019 0/0:81,0:81:99:0,220,2713 0/0:71,0:71:99:0,199,2426 0/0:86,0:86:99:0,241,2926 0/0:57,0:57:99:0,159,1873 0/0:48,0:50:99:0,138,1636 0/0:43,0:43:99:0,129,1519 0/0:57,0:57:99:0,162,1940 0/0:37,0:37:99:0,105,1248 0/0:52,0:52:99:0,153,1825 0/0:166,0:166:99:0,445,5365 0/0:57,0:57:99:0,156,1858 0/0:56,1:57:99:0,123,1814 0/0:48,0:48:99:0,144,1669 0/0:78,0:78:99:0,220,2597 0/0:84,1:86:99:0,232,2794 0/0:88,0:88:99:0,247,2915 0/0:46,0:46:99:0,126,1488 0/1:51,52:103:99:1691,0,1422 0/0:86,0:86:99:0,241,2923 0/0:67,0:67:99:0,199,2343 0/0:72,0:72:99:0,199,2442 0/0:45,0:45:99:0,129,1503 0/0:62,0:63:99:0,172,2036 0/0:47,0:47:99:0,132,1528 0/0:38,0:38:99:0,114,1339 0/0:47,0:47:99:0,129,1545 0/0:65,0:65:99:0,178,2147 0/0:51,0:51:99:0,144,1684 0/0:56,0:56:99:0,162,1928 0/0:65,0:65:99:0,193,2329 0/0:53,0:54:99:0,150,1788 0/0:71,0:71:99:0,193,2332 0/0:54,0:54:99:0,153,1799 0/0:71,0:71:99:0,202,2411 0/0:61,1:62:99:0,140,2063 0/0:57,0:57:99:0,165,1928 0/0:61,0:61:99:0,169,2056 10 81053248 . G A 200.99 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.916;DP=2592;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.6254;InbreedingCoeff=-0.0120;MQ=59.07;MQ0=0;MQRankSum=-0.730;QD=4.47;ReadPosRankSum=1.317 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,150,1744 0/0:52,0:52:99:0,144,1704 0/0:39,0:40:99:0,108,1278 0/0:105,0:105:99:0,295,3596 0/0:119,0:119:99:0,328,4033 0/0:92,0:92:99:0,232,2742 0/0:67,0:68:99:0,178,2196 0/0:80,0:80:99:0,211,2569 0/0:41,0:41:99:0,102,1200 0/0:45,0:45:99:0,126,1533 0/1:28,16:45:99:247,0,877 0/0:41,0:41:99:0,114,1367 0/0:40,0:40:99:0,111,1269 0/0:49,0:51:99:0,126,1451 0/0:109,0:109:99:0,289,3343 0/0:71,0:71:99:0,196,2290 0/0:39,0:39:99:0,108,1315 0/0:43,0:44:99:0,117,1329 0/0:71,0:72:99:0,183,2122 0/0:89,0:89:99:0,250,2932 0/0:65,0:65:99:0,171,2026 0/0:62,0:62:99:0,177,2035 0/0:139,0:139:99:0,376,4565 0/0:68,0:69:99:0,190,2343 0/0:78,0:78:99:0,211,2618 0/0:71,0:72:99:0,208,2619 0/0:46,0:46:99:0,126,1494 0/0:37,0:37:99:0,108,1315 0/0:42,0:42:99:0,120,1376 0/0:56,0:56:99:0,156,1845 0/0:52,0:52:99:0,150,1774 0/0:74,0:74:99:0,211,2489 0/0:66,0:66:99:0,193,2281 0/0:55,0:55:99:0,159,1878 0/0:31,0:31:84.24:0,84,1000 0/0:46,0:46:99:0,135,1572 0/0:68,0:68:99:0,178,2124 0/0:38,0:39:99:0,102,1223 0/0:57,0:57:99:0,156,1889 0/0:57,0:57:99:0,162,1908 0/0:37,0:37:99:0,99,1169 0/0:48,0:48:99:0,132,1578 10 81318663 . C G 15752.01 . AC=10;AF=0.119;AN=84;BaseQRankSum=3.807;DP=5216;DS;Dels=0.00;FS=23.870;HRun=1;HaplotypeScore=2.9951;InbreedingCoeff=-0.1351;MQ=56.00;MQ0=23;MQRankSum=2.551;QD=12.05;ReadPosRankSum=4.495 GT:AD:DP:GQ:PL 0/1:33,50:83:99:1354,0,968 0/0:109,0:109:99:0,301,3669 0/0:96,0:96:99:0,271,3316 0/1:144,104:249:99:2668,0,4275 0/0:242,0:242:99:0,671,8931 0/0:186,0:186:99:0,509,6637 0/0:149,0:149:99:0,397,5209 0/1:85,52:137:99:1407,0,2737 0/0:104,1:105:99:0,280,3413 0/0:68,2:70:99:0,167,2339 0/0:88,0:88:99:0,244,2974 0/0:99,0:99:99:0,280,3387 0/1:34,40:74:99:1094,0,922 0/0:107,0:108:99:0,298,3634 0/0:242,0:242:99:0,638,7834 0/0:92,0:93:99:0,256,3133 0/0:88,0:88:99:0,250,3018 0/0:87,0:87:99:0,238,2888 0/1:78,61:139:99:1605,0,2179 0/1:87,66:154:99:1662,0,2554 0/0:207,0:208:99:0,530,6580 0/0:123,0:124:99:0,343,4216 0/1:118,100:218:99:2909,0,3546 0/0:131,0:131:99:0,349,4583 0/0:152,0:152:99:0,412,5290 0/0:151,1:152:99:0,354,4995 0/0:74,0:74:99:0,202,2476 0/0:109,0:109:99:0,301,3718 0/0:79,0:79:99:0,214,2626 0/0:103,0:103:99:0,292,3620 0/0:100,0:100:99:0,265,3299 0/0:164,2:168:99:0,445,5565 0/0:119,0:119:99:0,316,3968 0/1:41,42:83:99:954,0,1234 0/1:37,38:76:99:1076,0,1032 0/0:107,0:107:99:0,298,3619 0/0:152,0:153:99:0,403,4964 0/0:90,0:90:99:0,241,2975 0/0:92,0:92:99:0,265,3217 0/0:88,0:88:99:0,247,2982 0/0:98,0:98:99:0,280,3390 0/1:58,36:94:99:1023,0,1778 10 81318721 . C A 6602.43 . AC=2;AF=0.024;AN=84;BaseQRankSum=-18.548;DP=6478;DS;Dels=0.00;FS=24.411;HRun=0;HaplotypeScore=3.7465;InbreedingCoeff=-0.0244;MQ=54.75;MQ0=21;MQRankSum=12.418;QD=13.26;ReadPosRankSum=1.362 GT:AD:DP:GQ:PL 0/0:134,0:134:99:0,394,4847 0/0:121,0:121:99:0,334,4136 0/0:116,0:117:99:0,316,3943 0/1:123,127:250:99:3379,0,3826 0/0:237,1:238:99:0,651,8823 0/0:243,1:245:99:0,681,9342 0/0:160,0:160:99:0,460,6041 0/0:185,0:187:99:0,506,6688 0/0:130,0:130:99:0,352,4411 0/0:117,0:117:99:0,340,4220 0/0:107,0:107:99:0,298,3714 0/0:99,0:100:99:0,286,3501 0/0:95,1:96:99:0,265,3292 0/0:139,0:140:99:0,385,4796 0/0:250,0:250:99:0,692,8538 0/0:122,0:122:99:0,352,4405 0/0:147,1:148:99:0,384,5136 0/0:104,0:105:99:0,301,3707 0/0:192,1:193:99:0,511,6283 0/0:233,0:233:99:0,611,7733 0/0:208,0:209:99:0,554,6937 0/0:133,0:133:99:0,373,4677 0/1:121,127:248:99:3224,0,3760 0/0:151,0:151:99:0,409,5280 0/0:184,0:184:99:0,518,6790 0/0:168,0:168:99:0,460,6080 0/0:116,0:116:99:0,319,3992 0/0:150,0:150:99:0,409,5056 0/0:102,2:104:99:0,257,3587 0/0:118,0:118:99:0,328,4130 0/0:130,0:131:99:0,355,4400 0/0:227,0:228:99:0,593,7439 0/0:130,0:130:99:0,358,4454 0/0:127,0:127:99:0,349,4378 0/0:111,0:111:99:0,307,3818 0/0:142,1:143:99:0,376,4657 0/0:221,2:223:99:0,535,6841 0/0:129,0:130:99:0,355,4436 0/0:125,0:125:99:0,364,4574 0/0:108,0:108:99:0,307,3849 0/0:121,0:121:99:0,319,3961 0/0:127,0:127:99:0,349,4269 10 81701722 . T C 55305.39 . 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C CT 6682.50 . 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G C 4085.90 . 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G A 964.17 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.601;DP=2999;DS;Dels=0.00;FS=0.734;HRun=0;HaplotypeScore=1.5612;InbreedingCoeff=-0.0120;MQ=59.41;MQ0=0;MQRankSum=-0.228;QD=10.15;ReadPosRankSum=-0.039 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,138,1698 0/0:48,0:48:99:0,135,1631 0/0:44,0:45:99:0,117,1407 0/0:166,0:166:99:0,436,5738 0/0:134,0:136:99:0,364,4837 0/0:118,1:119:99:0,310,4398 0/0:91,0:91:99:0,238,3139 0/0:96,0:96:99:0,256,3401 0/0:45,0:45:99:0,132,1644 0/0:42,0:42:99:0,123,1515 0/0:55,0:55:99:0,159,1935 0/0:46,0:47:99:0,123,1495 0/0:47,0:47:99:0,129,1598 0/0:55,0:55:99:0,159,1890 0/0:156,0:157:99:0,409,4988 0/0:46,0:47:99:0,129,1542 0/0:36,0:36:99:0,99,1237 0/0:53,0:53:99:0,147,1754 0/0:100,0:101:99:0,271,3282 0/0:92,0:92:99:0,256,3041 0/0:94,0:95:99:0,256,3129 0/0:51,0:51:99:0,138,1671 0/0:160,0:160:99:0,427,5703 0/0:71,0:71:99:0,187,2389 0/0:95,0:95:99:0,265,3437 0/0:88,0:88:99:0,247,3239 0/0:48,0:48:99:0,129,1546 0/0:50,0:50:99:0,135,1673 0/0:60,0:60:99:0,171,2047 0/0:45,0:45:99:0,129,1539 0/0:49,0:49:99:0,135,1597 0/1:57,38:95:99:1010,0,1540 0/0:74,0:74:99:0,205,2499 0/0:48,0:48:99:0,126,1523 0/0:48,0:48:99:0,141,1712 0/0:43,0:43:99:0,123,1446 0/0:70,0:70:99:0,187,2288 0/0:59,0:59:99:0,162,1925 0/0:61,0:61:99:0,175,2118 0/0:64,0:64:99:0,181,2167 0/0:49,0:49:99:0,135,1653 0/0:47,0:47:99:0,129,1573 10 85972970 . C T 2121.06 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.041;DP=3968;Dels=0.00;FS=3.256;HRun=0;HaplotypeScore=1.8807;InbreedingCoeff=-0.0244;MQ=59.34;MQ0=1;MQRankSum=1.557;QD=14.33;ReadPosRankSum=-1.278 GT:AD:DP:GQ:PL 0/0:78,0:79:99:0,205,2404 0/0:75,0:76:99:0,199,2339 0/0:62,0:62:99:0,168,2010 0/0:178,0:178:99:0,488,6238 0/0:161,0:161:99:0,457,5893 0/0:125,0:125:99:0,337,4293 0/0:91,0:91:99:0,238,3074 0/0:121,0:121:99:0,337,4324 0/0:78,0:78:99:0,214,2513 0/0:69,0:69:99:0,193,2256 0/0:47,0:47:99:0,126,1501 0/0:82,0:82:99:0,223,2635 0/0:58,2:60:99:0,122,1822 0/0:81,0:81:99:0,232,2670 0/0:231,0:233:99:0,617,7284 0/0:70,0:70:99:0,202,2356 0/0:69,0:69:99:0,202,2350 0/0:72,0:72:99:0,202,2378 0/0:107,0:108:99:0,304,3535 0/0:116,0:117:99:0,316,3773 0/0:130,0:130:99:0,358,4225 0/0:94,0:94:99:0,268,3172 0/0:193,0:193:99:0,539,6905 0/0:74,0:74:99:0,205,2599 0/0:116,0:116:99:0,307,3916 0/0:93,0:93:99:0,256,3194 0/0:65,0:65:99:0,184,2163 0/0:89,0:89:99:0,241,2863 0/0:63,0:63:99:0,177,2122 0/0:63,0:63:99:0,162,1912 0/0:73,0:73:99:0,211,2502 0/0:121,0:121:99:0,352,4182 0/0:92,0:93:99:0,247,2962 0/0:66,0:66:99:0,184,2158 0/0:83,0:83:99:0,232,2714 0/0:72,0:72:99:0,205,2362 0/0:122,0:123:99:0,337,3896 0/0:89,0:89:99:0,247,2900 0/0:61,0:61:99:0,174,2044 0/1:39,40:80:99:1237,0,1080 0/0:80,0:80:99:0,217,2541 0/1:35,33:68:99:947,0,987 10 85985269 . G A 483.30 . AC=17;AF=0.202;AN=84;BaseQRankSum=-12.616;DP=1527;Dels=0.00;FS=181.522;HRun=2;HaplotypeScore=1.1355;InbreedingCoeff=-0.2660;MQ=58.97;MQ0=0;MQRankSum=-0.298;QD=0.73;ReadPosRankSum=-1.445 GT:AD:DP:GQ:PL 0/0:28,9:38:35.41:0,35,611 0/0:21,10:31:51.10:0,51,592 0/1:19,10:29:15.12:15,0,411 0/1:29,14:43:20.48:20,0,561 0/0:26,9:35:54.11:0,54,619 0/0:31,9:40:60.13:0,60,728 0/0:23,8:31:24.41:0,24,544 0/0:26,8:34:1.67:3,0,438 0/1:26,10:36:64.06:64,0,659 0/0:20,5:25:42.08:0,42,478 0/1:18,12:30:12.26:12,0,367 0/0:23,12:35:32.41:0,32,578 0/1:22,12:34:3.84:4,0,564 0/1:24,15:39:48.55:49,0,491 0/1:77,47:124:49.90:50,0,1701 0/0:22,9:31:54.10:0,54,595 0/0:31,9:40:63.14:0,63,733 0/1:25,10:36:33.57:34,0,458 0/0:27,17:45:48.99:0,49,827 0/0:20,6:26:19.40:0,19,446 0/0:25,11:37:38.58:0,39,753 0/0:21,8:29:2.89:0,0,506 0/1:22,17:39:26.97:27,0,409 0/1:20,10:30:8.27:8,0,393 0/0:34,12:47:48.09:0,48,587 0/0:24,9:33:29.44:0,29,584 0/1:26,11:37:43.25:43,0,616 0/0:29,9:38:34.31:0,34,619 0/0:24,7:31:48.05:0,48,522 0/1:26,14:40:38.17:38,0,618 0/0:31,7:38:27.83:0,28,829 0/0:37,6:43:29.15:0,29,686 0/1:17,6:23:8.21:8,0,244 0/1:21,15:36:15.34:15,0,410 0/0:17,11:29:20.42:0,20,489 0/0:25,10:35:17.40:0,17,452 0/1:19,18:37:99:169,0,330 0/0:26,9:35:57.09:0,57,637 0/1:16,9:25:9.54:10,0,414 0/1:11,12:23:69.20:69,0,225 0/0:21,8:29:13.56:0,14,466 0/0:21,10:31:7.75:0,8,537 10 86008695 . CGGA C 118.30 . AC=8;AF=0.095;AN=84;BaseQRankSum=-4.717;DP=1617;FS=589.623;HRun=0;HaplotypeScore=140.0648;InbreedingCoeff=-0.1195;MQ=56.07;MQ0=0;MQRankSum=-1.517;QD=0.60;ReadPosRankSum=-10.630 GT:AD:DP:GQ:PL 0/0:30,0:30:27.35:0,27,1246 0/0:30,0:30:30.21:0,30,1155 0/0:23,0:23:52.93:0,53,1129 0/0:77,15:92:99:0,112,4919 0/0:85,0:85:74.91:0,75,3694 0/0:55,0:52:11.73:0,12,2450 0/0:47,0:46:41.51:0,42,2169 0/0:61,0:57:48.71:0,49,2839 0/0:37,0:37:63.30:0,63,1606 0/0:27,0:27:32.16:0,32,957 0/1:22,0:22:29.33:29,0,769 0/0:30,0:30:10.89:0,11,1320 0/1:18,0:18:50.58:51,0,694 0/0:29,0:29:52.85:0,53,1546 0/0:83,0:83:14.13:0,14,3847 0/0:26,0:26:7.07:0,7,1156 0/1:25,0:25:15.74:16,0,1040 0/0:34,0:34:22.50:0,22,1141 0/0:38,0:38:15.49:0,15,1683 0/0:52,0:52:66.99:0,67,2245 0/0:32,0:32:66.14:0,66,1533 0/0:31,0:31:52.22:0,52,1504 0/0:89,0:89:82.40:0,82,4467 0/0:51,0:50:59.57:0,60,2685 0/0:77,0:72:99:0,142,4027 0/1:34,0:33:8.30:8,0,1565 0/0:17,0:17:32.40:0,32,734 0/1:22,0:22:25.72:26,0,909 0/0:27,0:27:63.21:0,63,1499 0/1:33,0:32:75.51:76,0,1013 0/0:27,0:27:1.26:0,1,1091 0/0:57,0:57:68.19:0,68,2633 0/1:21,0:21:23.16:23,0,526 0/0:26,0:26:4.34:0,4,1256 0/0:31,0:31:57.19:0,57,1359 0/1:21,0:21:14.72:15,0,726 0/0:33,0:33:10.38:0,10,1534 0/0:37,0:36:23.16:0,23,1522 0/0:32,0:32:33.19:0,33,1214 0/0:21,0:21:32.20:0,32,999 0/0:28,0:28:60.19:0,60,1366 0/0:26,0:26:31.25:0,31,1329 10 86008696 . G C 180.72 . AC=7;AF=0.083;AN=84;BaseQRankSum=-9.487;DP=1617;Dels=0.01;FS=475.416;HRun=1;HaplotypeScore=2.0471;InbreedingCoeff=-0.1179;MQ=56.07;MQ0=0;MQRankSum=1.539;QD=1.09;ReadPosRankSum=-10.140 GT:AD:DP:GQ:PL 0/0:21,9:30:25.79:0,26,600 0/0:18,12:30:22.45:0,22,480 0/0:21,1:23:45.11:0,45,520 0/0:73,4:77:99:0,199,2512 0/0:60,25:85:73.07:0,73,1946 0/0:39,16:55:16.33:0,16,1247 0/0:35,12:47:39.39:0,39,1194 0/0:43,18:61:32.46:0,32,1385 0/0:25,12:37:66.19:0,66,782 0/0:16,11:27:42.09:0,42,467 0/0:12,10:22:9.22:0,9,334 0/0:21,9:30:1.99:0,2,596 0/1:12,6:18:63.71:64,0,309 0/0:25,4:29:40.51:0,41,751 0/0:59,24:83:38.45:0,38,1748 0/0:21,5:26:1.45:4,0,528 0/1:19,6:25:16.95:17,0,495 0/0:19,15:34:16.80:0,17,545 0/0:28,10:38:10.34:0,10,748 0/0:39,13:52:69.73:0,70,1134 0/0:26,5:32:63.16:0,63,757 0/0:23,8:31:63.17:0,63,745 0/0:66,23:89:65.24:0,65,2295 0/0:42,9:51:45.66:0,46,1351 0/0:62,15:77:99:0,133,2059 0/0:25,9:34:3.17:0,3,741 0/0:12,5:17:33.10:0,33,393 0/1:16,6:22:42.57:43,0,415 0/0:23,4:27:63.20:0,63,780 0/1:20,13:33:98.16:98,0,473 0/0:17,10:27:18.65:0,19,548 0/0:45,12:57:48.24:0,48,1194 0/1:12,9:21:32.97:33,0,255 0/1:21,5:26:4.58:5,0,603 0/0:21,10:31:57.18:0,57,705 0/1:12,9:21:26.72:27,0,297 0/0:23,9:33:0.87:0,1,698 0/0:25,11:37:36.47:0,36,703 0/0:23,9:32:25.60:0,26,585 0/0:16,4:21:36.11:0,36,435 0/0:21,7:28:57.14:0,57,642 0/0:21,5:26:55.39:0,55,682 10 86012713 . C T 31771.91 . AC=35;AF=0.417;AN=84;BaseQRankSum=21.662;DP=2227;Dels=0.00;FS=2.104;HRun=0;HaplotypeScore=1.6084;InbreedingCoeff=-0.1265;MQ=59.24;MQ0=0;MQRankSum=1.174;QD=21.40;ReadPosRankSum=-0.266 GT:AD:DP:GQ:PL 0/1:14,25:39:99:718,0,351 0/1:24,21:45:99:595,0,622 0/1:25,14:39:99:382,0,637 1/1:0,99:99:99:3470,283,0 1/1:0,100:100:99:3649,298,0 0/0:65,0:65:99:0,184,2243 0/1:30,46:77:99:1317,0,821 0/0:65,0:65:99:0,190,2263 0/1:14,9:23:99:254,0,356 1/1:1,31:32:74.60:1090,75,0 0/0:25,0:25:72.18:0,72,792 0/0:35,0:35:93.23:0,93,1030 0/1:14,17:31:99:520,0,319 0/0:34,0:34:99:0,102,1111 0/0:135,0:136:99:0,388,4299 0/0:37,0:37:99:0,99,1074 0/1:17,25:42:99:782,0,371 0/1:12,19:31:99:524,0,287 0/1:21,48:69:99:1479,0,493 0/0:82,0:82:99:0,229,2513 0/1:37,34:71:99:977,0,941 0/0:49,0:49:99:0,144,1584 1/1:0,129:129:99:4519,370,0 0/0:68,0:68:99:0,193,2337 0/0:64,0:64:99:0,181,2169 0/1:24,29:53:99:863,0,646 0/1:18,21:39:99:638,0,457 0/1:25,24:49:99:699,0,597 0/1:12,16:28:99:470,0,268 0/1:10,24:34:99:701,0,213 0/1:20,21:42:99:606,0,535 0/1:29,38:67:99:986,0,704 0/0:47,0:47:99:0,135,1475 0/1:17,19:36:99:587,0,424 1/1:1,34:35:68.87:1152,69,0 0/1:20,30:50:99:872,0,473 0/1:39,35:74:99:1000,0,985 0/1:22,15:37:99:393,0,570 0/1:18,18:36:99:548,0,441 0/1:16,23:39:99:660,0,393 0/0:35,0:35:93.24:0,93,1046 1/1:1,37:39:78.22:1320,78,0 10 86017740 . C T 3568.50 . AC=6;AF=0.071;AN=84;BaseQRankSum=-7.213;DP=1772;Dels=0.00;FS=15.072;HRun=2;HaplotypeScore=0.8676;InbreedingCoeff=-0.0769;MQ=59.24;MQ0=0;MQRankSum=0.185;QD=13.42;ReadPosRankSum=-0.043 GT:AD:DP:GQ:PL 0/1:11,20:31:99:560,0,261 0/0:37,0:37:99:0,102,1280 0/0:23,0:23:57.17:0,57,720 0/0:100,0:100:99:0,274,3553 0/1:38,33:71:99:937,0,1267 0/0:62,0:62:99:0,166,2172 0/1:30,27:57:99:767,0,818 0/0:62,0:62:99:0,166,2208 0/0:32,0:32:84.25:0,84,1055 0/0:27,0:27:72.23:0,72,928 0/0:27,0:27:72.21:0,72,877 0/0:40,0:40:99:0,108,1389 0/0:34,0:34:90.24:0,90,1105 0/0:19,0:19:54.15:0,54,658 0/0:100,0:100:99:0,250,3175 0/0:25,0:25:72.22:0,72,925 0/0:37,0:37:99:0,99,1224 0/0:33,0:33:84.26:0,84,1055 0/0:48,0:49:99:0,126,1532 0/0:52,0:52:99:0,138,1769 0/0:31,0:31:81.22:0,81,986 0/0:44,0:44:99:0,111,1407 0/0:92,0:92:99:0,262,3480 0/0:59,0:59:99:0,157,2097 0/0:50,0:50:99:0,132,1758 0/0:48,0:48:99:0,126,1691 0/0:39,0:39:99:0,105,1316 0/0:23,0:23:63.17:0,63,774 0/0:40,0:40:99:0,108,1365 0/0:30,0:30:78.23:0,78,963 0/0:34,0:34:99:0,99,1224 0/0:46,0:46:99:0,120,1555 0/0:30,0:30:84.26:0,84,1048 0/0:38,0:38:93.30:0,93,1209 0/0:22,0:22:57.15:0,57,697 0/1:21,12:33:99:336,0,561 0/1:28,18:46:99:430,0,759 0/0:35,0:35:84.25:0,84,1062 0/1:10,18:28:99:538,0,279 0/0:36,0:36:93.27:0,93,1169 0/0:15,0:15:45.13:0,45,549 0/0:35,0:35:96.26:0,96,1177 10 87373325 . T G 471.41 . AC=20;AF=0.238;AN=84;BaseQRankSum=-21.585;DP=2256;Dels=0.00;FS=728.826;HRun=2;HaplotypeScore=2.8888;InbreedingCoeff=-0.3281;MQ=58.17;MQ0=0;MQRankSum=3.674;QD=0.44;ReadPosRankSum=-14.060 GT:AD:DP:GQ:PL 0/0:26,11:37:17.70:0,18,731 0/0:22,9:31:9.96:0,10,651 0/1:17,18:35:68.84:69,0,452 0/1:60,65:125:28.07:28,0,1704 0/1:79,62:141:17.09:17,0,2321 0/0:52,31:83:75.41:0,75,1607 0/0:44,27:71:75.49:0,75,1105 0/0:43,32:75:98.86:0,99,1358 0/0:20,16:36:5.56:0,6,526 0/1:21,17:38:62.64:63,0,596 0/0:25,6:31:70.58:0,71,762 0/1:26,21:47:67.73:68,0,681 0/1:18,15:33:15.80:16,0,572 0/1:25,19:44:4.74:5,0,569 0/0:58,33:91:19.82:0,20,1592 0/0:18,16:34:1.84:3,0,560 0/0:28,23:51:17.88:0,18,757 0/0:28,8:36:61.49:0,61,872 0/1:37,16:53:21.60:22,0,1115 0/0:54,25:80:58.53:0,59,1673 0/1:36,17:53:3.42:3,0,1007 0/0:28,18:46:7.50:0,8,847 0/0:71,48:119:49.37:0,49,2096 0/1:27,21:48:41.04:41,0,785 0/1:40,39:79:32.03:32,0,1157 0/0:45,17:62:96.83:0,97,1448 0/1:18,17:35:13.74:14,0,550 0/0:22,11:33:1.17:0,1,617 0/1:20,13:33:38.73:39,0,539 0/1:23,20:44:22.04:22,0,609 0/1:17,20:37:5.63:6,0,510 0/0:43,27:70:99:0,111,1244 0/1:29,30:59:6.86:7,0,730 0/1:28,18:46:45.88:46,0,782 0/0:20,13:33:20.53:0,21,505 0/0:28,14:42:42.96:0,43,846 0/0:39,13:52:5.90:0,6,1111 0/1:30,18:48:38.83:39,0,764 0/1:20,20:40:18.79:19,0,583 0/1:20,15:35:75.66:76,0,612 0/0:22,9:31:19.91:0,20,697 0/0:26,13:39:69.18:0,69,803 10 88126072 . G A 1081.27 . AC=22;AF=0.306;AN=72;BaseQRankSum=1.675;DP=133;Dels=0.00;FS=3.966;HRun=1;HaplotypeScore=0.1258;InbreedingCoeff=0.0330;MQ=56.72;MQ0=0;MQRankSum=-1.153;QD=14.81;ReadPosRankSum=1.252 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,65 ./. ./. 0/0:4,0:4:12.03:0,12,132 0/1:1,3:4:24.94:96,0,25 ./. 0/0:3,0:3:9.03:0,9,110 0/0:2,0:2:6.02:0,6,69 0/1:2,1:3:27.95:28,0,58 0/0:2,0:2:6.02:0,6,69 ./. 0/0:6,0:6:12.04:0,12,154 0/0:2,0:2:6.02:0,6,67 0/0:4,0:4:9.01:0,9,92 0/1:6,9:16:99:222,0,157 0/1:4,2:6:42.25:42,0,100 0/0:1,0:1:3.01:0,3,39 0/1:2,3:5:60.71:70,0,61 0/0:5,0:5:9.02:0,9,107 0/1:5,5:10:95.11:156,0,95 0/0:9,0:10:21.06:0,21,251 0/0:4,0:4:12.03:0,12,134 0/0:4,0:4:12.04:0,12,146 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.03:0,9,108 ./. 0/0:3,0:3:9.02:0,9,100 0/1:1,4:5:17.46:124,0,17 1/1:0,1:1:3.01:37,3,0 1/1:0,3:3:9.03:112,9,0 0/1:2,1:3:27.95:28,0,57 0/0:2,0:2:6.02:0,6,70 1/1:0,1:1:3.01:35,3,0 0/1:0,1:1:1.76:35,3,0 1/1:0,1:1:3.01:38,3,0 0/1:1,1:2:29.23:29,0,30 1/1:2,3:5:9.03:107,9,0 0/1:2,3:5:46.16:51,0,46 0/0:1,0:1:3.01:0,3,33 0/0:1,0:1:3.01:0,3,32 0/1:1,1:2:27.42:27,0,27 ./. 10 88126125 . G A 125.29 . AC=10;AF=0.139;AN=72;BaseQRankSum=-3.420;DP=148;Dels=0.00;FS=75.555;HRun=2;HaplotypeScore=0.1431;InbreedingCoeff=-0.1045;MQ=58.06;MQ0=0;MQRankSum=-1.207;QD=2.98;ReadPosRankSum=-3.680 GT:AD:DP:GQ:PL 0/0:1,2:3:3.01:0,3,39 0/1:1,1:2:24.58:25,0,29 0/0:2,0:2:6.02:0,6,77 0/1:4,4:8:24.10:24,0,92 0/1:5,2:7:12.66:13,0,114 ./. 0/0:3,0:3:9.03:0,9,118 0/0:3,0:3:3.01:0,3,38 0/0:4,0:4:9.03:0,9,108 0/0:2,0:2:6.02:0,6,74 ./. 0/0:3,0:3:9.03:0,9,115 0/0:2,1:3:3.90:0,4,41 0/0:2,1:3:3.01:0,3,35 0/0:11,3:14:21.06:0,21,252 0/0:2,0:2:3.01:0,3,38 0/0:2,0:2:6.02:0,6,78 0/0:4,0:4:12.04:0,12,155 0/0:7,1:8:12.93:0,13,158 0/0:7,0:7:15.05:0,15,195 0/1:8,3:11:52.06:52,0,148 0/0:6,1:7:9.03:0,9,116 0/0:4,1:5:9.03:0,9,111 0/1:2,1:3:15.68:16,0,56 0/1:2,2:4:21.65:22,0,25 0/1:1,0:1:1.76:0,3,26 ./. 0/0:2,1:3:6.02:0,6,79 ./. 0/0:5,0:5:11.98:0,12,112 1/1:1,3:4:6.02:65,6,0 ./. 0/0:2,0:2:6.02:0,6,75 0/0:2,0:2:3.01:0,3,39 0/0:2,0:2:6:0,6,56 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:6.01:0,6,66 0/0:5,2:7:12.04:0,12,151 0/1:1,1:2:19.67:20,0,31 ./. 0/0:3,0:3:3.01:0,3,45 0/0:1,0:1:3.01:0,3,36 10 88203047 . G A 1140.70 . AC=1;AF=0.012;AN=84;BaseQRankSum=-7.470;DP=3878;DS;Dels=0.00;FS=1.999;HRun=1;HaplotypeScore=1.6362;InbreedingCoeff=-0.0120;MQ=59.35;MQ0=0;MQRankSum=1.506;QD=14.44;ReadPosRankSum=-1.479 GT:AD:DP:GQ:PL 0/0:68,0:68:99:0,187,2392 0/0:60,0:61:99:0,163,2105 0/1:37,42:79:99:1187,0,1039 0/0:196,0:196:99:0,509,6973 0/0:140,0:140:99:0,364,4996 0/0:125,0:125:99:0,328,4532 0/0:129,0:129:99:0,301,4159 0/0:119,0:119:99:0,310,4231 0/0:77,0:77:99:0,208,2703 0/0:61,0:61:99:0,175,2226 0/0:56,0:56:99:0,156,2006 0/0:85,0:85:99:0,220,2866 0/0:77,0:77:99:0,217,2788 0/0:70,0:70:99:0,196,2520 0/0:247,0:247:99:0,614,8030 0/0:64,0:64:99:0,178,2293 0/0:80,0:80:99:0,208,2712 0/0:69,0:69:99:0,196,2531 0/0:87,0:87:99:0,241,3084 0/0:91,0:91:99:0,247,3199 0/0:121,0:121:99:0,325,4169 0/0:64,0:64:99:0,163,2134 0/0:155,0:155:99:0,385,5332 0/0:106,0:106:99:0,262,3645 0/0:142,0:142:99:0,376,5180 0/0:131,0:131:99:0,316,4359 0/0:69,0:69:99:0,190,2440 0/0:65,0:65:99:0,181,2318 0/0:70,0:70:99:0,190,2416 0/0:71,0:71:99:0,199,2549 0/0:74,0:74:99:0,211,2665 0/0:105,0:105:99:0,259,3347 0/0:68,0:69:99:0,196,2507 0/0:85,0:85:99:0,232,2970 0/0:66,0:66:99:0,181,2311 0/0:80,0:80:99:0,223,2870 0/0:84,0:84:99:0,208,2693 0/0:78,0:78:99:0,217,2757 0/0:65,1:66:99:0,147,2282 0/0:64,0:64:99:0,184,2334 0/0:64,0:65:99:0,172,2225 0/0:67,0:67:99:0,184,2363 10 88203068 . T C 114041.23 . AC=75;AF=0.893;AN=84;BaseQRankSum=-5.205;DP=4132;DS;Dels=0.00;FS=1.225;HRun=1;HaplotypeScore=1.4674;InbreedingCoeff=-0.1200;MQ=59.35;MQ0=0;MQRankSum=-0.606;QD=27.60;ReadPosRankSum=-1.135 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2265,196,0 1/1:0,64:64:99:1953,159,0 0/1:37,44:81:99:1186,0,1042 1/1:0,207:207:99:6381,493,0 1/1:1,147:148:99:4674,329,0 1/1:1,128:129:99:4022,277,0 1/1:0,130:130:99:4048,328,0 1/1:0,132:132:99:4230,328,0 1/1:0,83:83:99:2565,214,0 1/1:0,63:63:99:1939,159,0 1/1:0,68:68:99:2180,184,0 0/1:53,38:91:99:898,0,1547 0/1:38,39:77:99:964,0,1061 1/1:0,76:76:99:2316,199,0 1/1:0,234:235:99:6954,587,0 1/1:0,71:71:99:2243,186,0 1/1:0,81:81:99:2582,217,0 1/1:1,68:69:99:2124,147,0 1/1:0,102:102:99:2968,250,0 1/1:0,106:106:99:3272,271,0 0/1:70,60:130:99:1639,0,1860 0/1:41,26:67:99:577,0,1170 1/1:0,180:180:99:5609,424,0 1/1:0,113:113:99:3722,289,0 1/1:0,138:138:99:4456,346,0 1/1:2,139:141:99:4214,258,0 1/1:0,64:64:99:2002,165,0 0/1:37,41:78:99:1073,0,1010 0/1:41,31:72:99:861,0,1156 1/1:0,68:68:99:2210,187,0 1/1:0,82:82:99:2539,211,0 1/1:0,107:107:99:3260,271,0 1/1:0,73:73:99:2379,193,0 1/1:0,93:93:99:2985,256,0 1/1:0,72:72:99:2281,196,0 1/1:0,96:96:99:2909,241,0 0/1:56,48:104:99:1250,0,1467 0/1:40,48:88:99:1329,0,1114 1/1:0,73:73:99:2371,199,0 1/1:0,72:72:99:2281,192,0 1/1:0,70:70:99:2132,180,0 1/1:0,65:66:99:2200,184,0 10 88414569 . C T 13455.42 . AC=14;AF=0.167;AN=84;BaseQRankSum=6.518;DP=3301;Dels=0.00;FS=58.310;HRun=0;HaplotypeScore=13.5046;InbreedingCoeff=-0.0286;MQ=59.20;MQ0=0;MQRankSum=0.638;QD=12.55;ReadPosRankSum=-2.130 GT:AD:DP:GQ:PL 0/0:61,0:61:99:0,156,1792 0/1:18,20:38:99:561,0,515 1/1:0,43:43:99:1426,117,0 0/1:80,69:150:99:1961,0,2159 0/0:132,0:132:99:0,337,4251 0/0:92,0:92:99:0,247,3105 0/0:89,0:89:99:0,235,2924 0/1:55,39:94:99:991,0,1752 0/0:60,0:61:99:0,172,2099 0/0:50,0:50:99:0,120,1467 0/0:60,0:60:99:0,172,2159 0/1:31,28:59:99:851,0,809 0/0:43,0:43:99:0,126,1371 0/1:38,17:55:99:444,0,1100 0/0:204,0:204:99:0,481,5788 0/0:88,0:88:99:0,241,2789 0/0:56,0:56:99:0,153,1776 0/0:43,0:43:99:0,117,1458 0/0:129,0:130:99:0,346,4147 0/0:135,0:135:99:0,346,4105 0/1:80,56:137:99:1552,0,2137 0/1:57,34:91:99:905,0,1645 0/1:77,58:135:99:1630,0,2390 0/0:72,0:72:99:0,193,2487 0/0:93,0:93:99:0,238,3150 0/0:91,1:93:99:0,235,2982 0/0:56,0:56:99:0,147,1686 0/0:55,0:55:99:0,150,1741 0/0:39,0:39:99:0,99,1143 0/0:49,0:49:99:0,135,1633 0/0:67,0:67:99:0,178,2161 0/0:139,2:141:99:0,312,3987 0/0:76,0:76:99:0,199,2306 0/1:27,15:43:99:406,0,756 0/1:33,20:53:99:562,0,1013 0/0:55,0:55:99:0,150,1757 0/1:70,59:130:99:1549,0,1752 0/0:46,0:46:99:0,123,1495 0/1:23,21:44:99:618,0,718 0/0:50,0:50:99:0,138,1606 0/0:43,0:43:99:0,126,1421 0/0:50,0:50:99:0,135,1541 10 88414570 . G A 16944.17 . AC=16;AF=0.190;AN=84;BaseQRankSum=-8.648;DP=3301;Dels=0.00;FS=9.247;HRun=0;HaplotypeScore=13.5015;InbreedingCoeff=-0.0809;MQ=59.22;MQ0=0;MQRankSum=1.672;QD=15.57;ReadPosRankSum=1.274 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,147,1742 0/0:38,0:38:99:0,111,1339 0/0:43,0:44:99:0,120,1500 0/0:149,0:149:99:0,388,5065 0/0:128,1:130:99:0,331,4286 0/0:95,0:97:99:0,238,2958 0/0:91,1:92:99:0,205,2956 0/0:93,0:94:99:0,250,3243 0/1:31,28:63:99:816,0,790 0/0:49,0:49:99:0,123,1486 1/1:0,56:59:99:1807,153,0 0/0:57,0:57:99:0,159,1901 0/0:43,0:43:99:0,123,1422 0/1:15,37:52:99:1042,0,425 0/0:207,0:208:99:0,487,5991 0/0:84,1:86:99:0,209,2632 0/0:54,0:54:99:0,147,1770 0/1:16,28:44:99:736,0,348 0/1:57,72:132:99:1924,0,1221 0/0:133,0:135:99:0,340,4084 0/0:139,0:140:99:0,373,4572 0/1:35,54:90:99:1443,0,990 0/1:58,76:135:99:2055,0,1747 0/1:32,38:70:99:1060,0,861 0/1:42,49:92:99:1246,0,1154 0/1:45,46:92:99:1137,0,1301 0/0:56,0:56:99:0,138,1655 0/0:56,0:56:99:0,147,1718 0/0:38,0:38:96.26:0,96,1152 0/1:24,26:51:99:649,0,648 0/1:31,35:67:99:904,0,793 0/0:138,0:139:99:0,331,4071 0/0:76,0:76:99:0,199,2361 0/0:42,1:43:92.74:0,93,1367 0/1:21,31:53:99:891,0,577 0/0:55,1:56:99:0,110,1686 0/0:127,0:128:99:0,322,3913 0/1:22,21:44:99:581,0,532 0/1:21,23:44:99:653,0,622 0/0:51,0:51:99:0,141,1656 0/0:46,1:47:91.57:0,92,1444 0/0:49,0:49:99:0,129,1520 10 88416964 . T G 2378.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=6.641;DP=3034;Dels=0.00;FS=2.968;HRun=2;HaplotypeScore=1.2151;InbreedingCoeff=-0.0244;MQ=58.93;MQ0=0;MQRankSum=-0.629;QD=12.65;ReadPosRankSum=-0.655 GT:AD:DP:GQ:PL 0/0:71,0:71:99:0,187,2301 0/0:62,0:62:99:0,153,1915 0/0:58,0:58:99:0,165,1976 0/0:130,0:130:99:0,325,4095 0/0:98,0:98:99:0,250,3135 0/0:101,0:101:99:0,244,3145 0/0:72,0:72:99:0,187,2385 0/0:88,0:88:99:0,226,2830 0/0:49,1:50:99:0,138,1644 0/0:64,1:65:99:0,181,2146 0/0:64,0:64:99:0,175,2127 0/0:57,0:57:99:0,153,1857 0/0:48,0:48:99:0,126,1525 0/0:60,0:60:99:0,165,2001 0/0:223,0:223:99:0,569,6930 0/0:42,0:42:99:0,123,1474 0/0:57,0:57:99:0,150,1827 0/0:68,0:68:99:0,181,2209 0/1:62,51:113:99:1372,0,1654 0/1:36,39:75:99:1069,0,981 0/0:96,1:97:99:0,250,3047 0/0:65,0:65:99:0,178,2164 0/0:114,0:115:99:0,289,3619 0/0:77,0:77:99:0,193,2437 0/0:93,0:93:99:0,238,2995 0/0:77,0:78:99:0,184,2348 0/0:41,0:41:99:0,99,1244 0/0:62,0:63:99:0,153,1912 0/0:57,0:57:99:0,150,1833 0/0:51,0:51:99:0,141,1689 0/0:45,0:45:99:0,129,1551 0/0:90,1:91:99:0,237,2907 0/0:74,0:74:99:0,202,2428 0/0:66,0:66:99:0,178,2154 0/0:47,0:47:99:0,135,1618 0/0:47,0:47:99:0,126,1548 0/0:73,1:74:99:0,187,2328 0/0:47,0:47:99:0,126,1531 0/0:46,0:46:99:0,132,1591 0/0:55,0:55:99:0,147,1812 0/0:41,0:41:99:0,114,1366 0/0:62,0:62:99:0,175,2097 10 88419700 . G T 1331.75 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.625;DP=2041;Dels=0.00;FS=5.395;HRun=0;HaplotypeScore=2.3512;InbreedingCoeff=-0.0244;MQ=56.94;MQ0=1;MQRankSum=1.540;QD=13.32;ReadPosRankSum=3.698 GT:AD:DP:GQ:PL 0/0:33,0:33:84.24:0,84,1023 0/0:34,0:34:93.26:0,93,1126 0/0:34,0:34:90.24:0,90,1058 0/0:128,0:128:99:0,349,4405 0/0:76,0:76:99:0,196,2444 0/0:74,0:74:99:0,196,2493 0/0:42,0:42:99:0,114,1456 0/0:67,0:68:99:0,180,2253 0/0:37,0:37:99:0,99,1213 0/0:30,0:30:75.22:0,75,925 0/0:29,0:29:81.24:0,81,983 0/0:33,0:33:99:0,99,1176 0/0:18,0:18:54.16:0,54,655 0/0:34,0:34:96.28:0,96,1171 0/0:108,0:108:99:0,277,3336 0/0:44,0:44:99:0,120,1400 0/0:34,0:34:96.26:0,96,1132 0/0:35,0:35:93.25:0,93,1122 0/0:53,0:54:99:0,126,1495 0/0:72,0:72:99:0,190,2329 0/0:68,0:68:99:0,171,2035 0/0:47,0:47:99:0,129,1584 0/0:100,1:101:99:0,235,3384 0/1:23,23:46:99:610,0,597 0/1:26,28:54:99:784,0,719 0/0:58,0:58:99:0,144,1833 0/0:38,0:38:99:0,105,1311 0/0:27,0:27:63.19:0,63,769 0/0:34,0:34:84.25:0,84,1055 0/0:43,0:43:99:0,111,1310 0/0:39,0:39:99:0,102,1268 0/0:60,0:60:99:0,162,2047 0/0:64,0:64:99:0,165,2049 0/0:29,0:29:75.23:0,75,945 0/0:30,0:31:81.23:0,81,990 0/0:43,0:43:99:0,114,1355 0/0:84,0:85:99:0,217,2590 0/0:31,0:31:84.23:0,84,1038 0/0:32,0:32:90.28:0,90,1107 0/0:36,0:37:99:0,99,1218 0/0:25,0:25:69.21:0,69,842 0/0:31,0:32:90.25:0,90,1069 10 88422028 . C G 512.27 . AC=5;AF=0.060;AN=84;BaseQRankSum=-3.438;DP=592;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4664;InbreedingCoeff=-0.0653;MQ=58.03;MQ0=0;MQRankSum=1.195;QD=7.76;ReadPosRankSum=0.268 GT:AD:DP:GQ:PL 0/0:10,0:10:27.08:0,27,335 0/0:12,0:12:36.11:0,36,455 0/0:9,0:9:24.08:0,24,310 0/0:25,0:25:66.21:0,66,883 0/0:31,0:31:90.29:0,90,1195 0/1:10,3:13:75.19:75,0,281 0/0:16,0:16:39.13:0,39,548 0/1:8,8:16:99:169,0,177 0/0:11,0:11:21.07:0,21,296 0/0:10,0:10:27.09:0,27,341 0/0:4,0:4:12.04:0,12,151 0/1:8,4:12:86.61:87,0,266 0/1:3,4:7:91.47:123,0,91 0/0:11,0:11:30.09:0,30,371 0/0:27,0:27:69.21:0,69,854 0/0:12,0:12:30.09:0,30,381 0/0:11,0:11:27.09:0,27,338 0/0:8,0:8:18.06:0,18,232 0/0:16,0:16:42.12:0,42,504 0/0:12,0:12:36.11:0,36,448 0/0:15,0:15:33.11:0,33,422 0/0:11,0:11:30.09:0,30,383 0/0:23,0:23:60.20:0,60,808 0/0:11,0:11:30.09:0,30,381 0/0:18,0:18:45.14:0,45,578 0/1:11,7:18:99:155,0,362 0/0:15,0:15:42.13:0,42,533 0/0:12,0:12:33.10:0,33,408 0/0:18,0:18:54.17:0,54,675 0/0:9,0:9:24.07:0,24,294 0/0:10,0:10:27.08:0,27,339 0/0:26,0:26:69.21:0,69,889 0/0:16,0:16:39.12:0,39,494 0/0:18,0:18:39.13:0,39,517 0/0:10,0:10:27.08:0,27,334 0/0:16,0:16:39.13:0,39,509 0/0:19,0:19:45.12:0,45,549 0/0:8,0:8:21.06:0,21,257 0/0:15,0:15:42.13:0,42,539 0/0:15,0:15:39.12:0,39,491 0/0:6,0:6:15.05:0,15,197 0/0:10,0:10:27.08:0,27,340 10 88422115 . A C 15.65 . AC=5;AF=0.061;AN=82;BaseQRankSum=-3.945;DP=314;Dels=0.00;FS=17.269;HRun=2;HaplotypeScore=0.6294;InbreedingCoeff=-0.1239;MQ=57.62;MQ0=0;MQRankSum=0.395;QD=0.41;ReadPosRankSum=-4.173 GT:AD:DP:GQ:PL 0/1:1,3:4:26.48:26,0,28 0/0:5,2:7:12.03:0,12,137 0/0:4,0:4:6.02:0,6,66 0/0:9,3:12:27.07:0,27,301 0/0:6,5:12:15.04:0,15,177 0/0:4,3:7:12.03:0,12,136 0/0:2,2:4:6.01:0,6,65 0/0:8,0:8:15.05:0,15,184 0/0:5,0:5:15.04:0,15,174 0/0:8,2:10:21.07:0,21,261 ./. 0/0:9,0:9:21.06:0,21,257 0/0:5,0:5:15.04:0,15,172 0/0:7,0:7:18.05:0,18,213 0/0:18,13:31:3.07:0,3,544 0/0:5,3:8:15.04:0,15,169 0/0:1,4:5:3.01:0,3,37 0/1:6,2:8:21.26:21,0,160 0/1:7,2:9:16.74:17,0,184 0/0:8,4:12:0.61:8,0,243 0/0:5,2:7:12.04:0,12,145 0/0:5,0:5:12.04:0,12,149 0/0:4,0:4:12.03:0,12,138 0/0:1,0:1:3.01:0,3,33 0/1:6,6:12:14.22:14,0,173 0/0:5,0:5:15.04:0,15,161 0/0:2,3:5:6.02:0,6,72 0/0:5,2:7:13.28:0,13,145 0/0:9,2:11:21.06:0,21,258 0/0:9,0:9:24.05:0,24,266 0/0:5,0:5:15.02:0,15,161 0/0:6,3:9:15.05:0,15,187 0/0:7,5:12:18.04:0,18,196 0/0:1,2:3:3.01:0,3,36 0/0:3,0:3:9.03:0,9,104 0/0:6,3:9:18.05:0,18,208 0/0:9,0:9:24.07:0,24,288 0/0:7,0:7:21.06:0,21,247 0/0:7,0:7:15.05:0,15,193 0/0:3,4:7:3.01:0,3,35 0/0:2,3:5:6.02:0,6,72 0/1:3,2:5:25.32:25,0,74 10 88422116 . C T 3981.82 . AC=43;AF=0.524;AN=82;BaseQRankSum=-6.811;DP=356;Dels=0.00;FS=12.713;HRun=0;HaplotypeScore=0.6294;InbreedingCoeff=0.1563;MQ=57.31;MQ0=0;MQRankSum=1.689;QD=16.52;ReadPosRankSum=5.488 GT:AD:DP:GQ:PL 0/1:2,2:4:29.55:61,0,30 0/1:5,3:8:54.20:54,0,130 1/1:0,5:5:9.02:99,9,0 0/1:6,8:14:99:232,0,132 0/0:16,0:16:39.12:0,39,490 0/1:4,3:7:46.23:46,0,98 0/0:4,0:4:9.02:0,9,103 1/1:0,7:7:18.03:203,18,0 1/1:1,7:8:15.03:160,15,0 0/1:6,4:10:78.97:79,0,164 ./. 1/1:1,9:10:21.06:240,21,0 0/1:3,3:6:58.33:97,0,58 1/1:1,9:10:18.05:220,18,0 0/0:34,0:34:87.26:0,87,1063 0/0:8,0:8:21.03:0,21,230 0/0:5,0:5:15.04:0,15,172 0/1:3,6:9:87.93:116,0,88 0/1:8,2:10:32.98:33,0,184 0/0:14,0:14:30.09:0,30,373 0/1:5,3:8:81.88:82,0,117 1/1:0,5:5:12.03:146,12,0 1/1:0,6:6:12.03:130,12,0 0/1:0,1:1:1.76:36,3,0 0/1:7,5:12:99:142,0,180 1/1:0,7:7:12:117,12,0 0/0:6,0:6:15.04:0,15,171 0/1:5,3:8:83.98:84,0,96 0/1:3,9:12:79.80:200,0,80 1/1:0,9:9:24.07:284,24,0 0/1:4,3:7:72.45:72,0,90 0/1:5,5:10:99:128,0,102 0/1:9,4:13:72.03:72,0,186 0/1:4,1:5:27.95:28,0,65 1/1:0,3:3:9.02:100,9,0 0/0:9,0:9:24.08:0,24,308 1/1:1,9:10:24.07:285,24,0 1/1:1,8:9:21.06:248,21,0 1/1:1,7:8:15.05:188,15,0 0/0:7,1:8:15.05:0,15,189 0/0:5,0:5:12.04:0,12,153 0/0:5,0:5:9.03:0,9,122 10 88422151 . C A 1288.63 . AC=14;AF=0.171;AN=82;BaseQRankSum=8.107;DP=306;Dels=0.00;FS=0.698;HRun=1;HaplotypeScore=0.1751;InbreedingCoeff=-0.1098;MQ=58.55;MQ0=0;MQRankSum=0.160;QD=14.32;ReadPosRankSum=1.682 GT:AD:DP:GQ:PL 0/0:5,0:5:15.01:0,15,155 0/0:6,0:6:18.05:0,18,203 0/0:3,0:3:9.02:0,9,92 0/0:13,0:13:39.12:0,39,468 0/0:15,0:15:42.12:0,42,506 0/0:4,0:4:12.04:0,12,146 0/0:5,0:5:15.05:0,15,179 0/0:3,0:3:9.03:0,9,108 0/1:3,2:5:55.28:55,0,67 0/0:6,0:6:12.04:0,12,149 0/1:0,3:3:0.97:82,6,0 0/0:10,0:10:24.06:0,24,267 0/0:2,0:2:6.01:0,6,65 0/1:4,2:6:54.21:54,0,110 0/0:26,0:26:63.17:0,63,736 0/0:9,0:9:27.06:0,27,280 0/0:5,0:5:15.04:0,15,158 0/1:2,4:6:46.94:135,0,47 0/1:6,6:12:99:192,0,143 0/0:12,0:12:33.09:0,33,376 0/0:10,0:10:27.06:0,27,301 0/1:2,7:9:46.22:208,0,46 0/1:3,3:6:66.70:67,0,94 0/1:2,1:3:27.95:28,0,60 0/1:4,7:11:99:206,0,115 0/1:1,4:5:20.21:139,0,20 0/0:8,0:8:24.07:0,24,268 0/0:10,0:10:27.07:0,27,306 0/0:11,0:11:30.07:0,30,340 0/1:3,3:6:53.90:65,0,54 0/1:3,2:5:61.34:61,0,78 0/0:4,0:4:12.02:0,12,123 0/0:9,0:9:27.05:0,27,279 0/0:4,0:4:12.03:0,12,128 ./. 0/0:8,0:8:24.07:0,24,275 0/0:11,0:11:27.07:0,27,307 0/1:5,3:8:90.02:90,0,141 0/1:3,2:5:61.33:61,0,81 0/0:4,0:4:12.03:0,12,128 0/0:5,0:5:12.03:0,12,141 0/0:7,0:7:21.06:0,21,242 10 88446985 . T C 6069.51 . AC=5;AF=0.060;AN=84;BaseQRankSum=-15.991;DP=4742;DS;Dels=0.00;FS=8.485;HRun=0;HaplotypeScore=2.7656;InbreedingCoeff=-0.0633;MQ=59.06;MQ0=0;MQRankSum=0.301;QD=12.39;ReadPosRankSum=-1.142 GT:AD:DP:GQ:PL 0/0:87,0:87:99:0,244,2939 0/0:83,0:83:99:0,226,2748 0/0:79,0:79:99:0,220,2678 0/0:189,0:189:99:0,521,6380 0/0:216,0:216:99:0,599,7387 0/0:152,0:152:99:0,421,5255 0/0:104,0:105:99:0,277,3493 0/0:150,0:151:99:0,397,4932 0/0:88,0:88:99:0,220,2704 0/0:85,0:85:99:0,238,2863 0/0:77,0:77:99:0,202,2454 0/0:61,0:61:99:0,168,2011 0/0:76,0:76:99:0,217,2593 0/0:87,0:87:99:0,232,2852 0/0:219,0:220:99:0,584,6985 0/0:82,0:83:99:0,229,2741 0/0:68,0:68:99:0,181,2212 0/1:28,43:71:99:1107,0,800 0/1:91,86:177:99:2155,0,2582 0/0:167,1:168:99:0,451,5517 0/0:168,1:169:99:0,406,5233 0/0:108,0:108:99:0,289,3526 0/0:205,0:205:99:0,551,6800 0/0:125,0:125:99:0,319,4053 0/0:130,0:130:99:0,340,4204 0/0:121,0:121:99:0,337,4099 0/0:73,0:73:99:0,199,2431 0/0:92,0:92:99:0,256,3084 0/0:70,0:70:99:0,193,2369 0/1:48,41:89:99:1047,0,1404 0/1:41,30:71:99:784,0,1258 0/0:168,0:169:99:0,460,5563 0/0:106,0:106:99:0,280,3442 0/0:84,0:84:99:0,232,2853 0/0:87,0:87:99:0,247,2977 0/0:95,0:95:99:0,256,3102 0/0:179,1:180:99:0,472,5707 0/0:98,0:98:99:0,268,3271 0/0:94,0:94:99:0,268,3203 0/0:92,0:92:99:0,253,3061 0/0:79,0:79:99:0,223,2670 0/1:44,38:82:99:977,0,1263 10 88722398 . A T 5808.05 . AC=21;AF=0.250;AN=84;BaseQRankSum=-7.167;DP=890;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4302;InbreedingCoeff=0.1680;MQ=59.08;MQ0=0;MQRankSum=0.291;QD=15.83;ReadPosRankSum=-0.712 GT:AD:DP:GQ:PL 0/0:16,0:16:45.14:0,45,575 0/0:19,0:19:51.15:0,51,607 0/0:17,1:18:10.36:0,10,535 1/1:1,25:26:36.94:789,37,0 0/1:12,13:25:99:323,0,378 0/0:35,0:35:78.25:0,78,1049 0/1:12,6:18:99:143,0,308 0/1:12,11:23:99:340,0,267 0/0:17,0:17:45.14:0,45,571 0/0:17,0:17:39.12:0,39,499 0/0:16,0:16:42.13:0,42,525 0/0:14,0:14:39.12:0,39,487 0/1:6,6:12:99:182,0,159 0/0:13,0:14:39.12:0,39,477 0/1:34,32:66:99:783,0,769 1/1:0,11:11:30.09:357,30,0 0/1:17,7:24:99:165,0,501 0/1:6,6:12:99:141,0,145 0/0:31,0:31:78.24:0,78,989 0/0:33,0:33:72.23:0,72,936 0/1:11,13:24:99:336,0,283 0/0:17,1:18:11.12:0,11,497 0/1:20,15:35:99:387,0,530 0/0:24,0:24:54.18:0,54,722 0/0:27,0:27:57.18:0,57,755 0/0:24,0:24:60.20:0,60,800 0/1:2,12:14:36.48:357,0,36 0/0:8,0:8:21.07:0,21,258 0/1:9,7:16:99:196,0,259 0/0:17,0:17:51.16:0,51,620 0/0:18,0:18:54.16:0,54,664 0/1:11,6:17:99:126,0,307 0/0:24,0:24:69.21:0,69,840 1/1:0,20:20:57.17:676,57,0 1/1:0,8:8:24.07:275,24,0 0/1:8,8:16:99:232,0,187 0/0:39,0:39:99:0,99,1259 0/0:20,0:20:48.14:0,48,603 0/0:18,0:18:51.15:0,51,632 0/0:13,0:13:39.10:0,39,473 0/0:25,1:26:28.85:0,29,747 0/0:17,0:17:48.15:0,48,601 10 88722731 . G C 193.13 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.443;DP=560;Dels=0.00;FS=1.322;HRun=0;HaplotypeScore=0.5538;InbreedingCoeff=-0.0275;MQ=58.93;MQ0=0;MQRankSum=-0.439;QD=8.40;ReadPosRankSum=0.511 GT:AD:DP:GQ:PL 0/0:6,0:6:15.05:0,15,196 0/0:10,0:10:30.09:0,30,375 0/0:14,0:14:33.09:0,33,417 0/0:29,0:29:81.25:0,81,1052 0/0:32,0:32:81.26:0,81,1098 0/0:15,0:15:27.08:0,27,372 0/0:18,0:18:42.14:0,42,589 0/0:23,0:23:60.18:0,60,810 0/0:7,0:7:21.07:0,21,266 0/0:9,0:9:24.08:0,24,307 0/0:6,0:6:18.06:0,18,223 0/0:11,0:11:30.09:0,30,382 0/0:10,0:10:21.06:0,21,266 0/0:14,0:14:36.11:0,36,455 0/0:42,0:42:99:0,111,1360 0/0:9,0:9:27.08:0,27,335 0/0:14,0:14:33.10:0,33,417 0/0:15,0:15:42.13:0,42,538 0/0:10,0:10:27.07:0,27,313 0/0:22,0:22:63.16:0,63,774 0/0:14,0:14:36.12:0,36,467 0/0:7,0:7:18.06:0,18,238 0/0:19,0:19:54.18:0,54,742 0/1:9,2:11:34.61:35,0,242 0/0:18,0:18:48.15:0,48,632 0/1:5,7:12:99:221,0,116 0/0:5,0:6:12.04:0,12,153 0/0:12,0:12:33.10:0,33,407 0/0:9,0:9:21.07:0,21,269 0/0:12,0:12:33.09:0,33,407 0/0:8,0:8:24.05:0,24,290 0/0:12,0:12:27.09:0,27,360 0/0:13,0:13:36.12:0,36,465 0/0:13,0:13:39.12:0,39,482 0/0:9,0:9:21.07:0,21,276 0/0:5,0:5:15.05:0,15,191 0/0:20,0:20:45.14:0,45,585 0/0:10,0:10:27.09:0,27,347 0/0:8,0:8:24.08:0,24,302 0/0:11,0:11:30.10:0,30,391 0/0:6,0:6:15.05:0,15,199 0/0:9,0:9:21.07:0,21,276 10 88820789 . T C 2937.79 . 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A T 45559.35 . 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C T 1483.11 . 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G A 3537.80 . 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A G 1316.91 . 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C T 772.85 . 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A G 119931.07 . 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T TG 29.48 . 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C G 147.85 . 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T A 26290.45 . 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A T 5991.45 . 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C T 21043.85 . 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C T 2722.13 . 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G A 14.28 . 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A G 3167.19 . 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G A 15855.37 . 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T C 3877.60 . 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A C 62845.86 . 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T C 23617.10 . 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A G 2356.14 . 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G A 13152.26 . AC=6;AF=0.071;AN=84;BaseQRankSum=-18.519;DP=5556;DS;Dels=0.00;FS=30.835;HRun=0;HaplotypeScore=2.5238;InbreedingCoeff=-0.0769;MQ=59.50;MQ0=0;MQRankSum=2.234;QD=13.89;ReadPosRankSum=2.003 GT:AD:DP:GQ:PL 0/0:109,0:109:99:0,304,3763 0/0:102,0:102:99:0,286,3532 0/0:104,0:104:99:0,280,3496 0/1:115,89:204:99:2452,0,3637 0/1:94,101:195:99:3026,0,2909 0/0:205,0:206:99:0,578,7678 0/0:180,0:180:99:0,515,6883 0/0:228,0:229:99:0,632,8397 0/0:130,0:131:99:0,352,4424 0/0:103,0:103:99:0,286,3564 0/1:53,50:103:99:1320,0,1544 0/0:99,0:99:99:0,268,3385 0/0:104,1:106:99:0,250,3449 0/0:107,0:107:99:0,286,3575 0/0:235,0:237:99:0,671,8206 0/0:88,0:88:99:0,247,3051 0/0:132,0:132:99:0,361,4516 0/0:117,0:117:99:0,319,3960 0/0:122,0:122:99:0,343,4152 0/0:140,0:141:99:0,364,4638 0/0:131,0:131:99:0,349,4337 0/0:66,0:66:99:0,175,2213 0/1:106,113:220:99:3342,0,3453 0/0:191,0:191:99:0,536,7148 0/0:200,0:200:99:0,551,7354 0/0:220,1:222:99:0,567,7976 0/0:97,0:97:99:0,265,3331 0/0:115,0:115:99:0,313,3873 0/0:105,0:105:99:0,280,3425 0/0:113,0:113:99:0,295,3681 0/0:99,2:101:99:0,247,3502 0/0:120,0:120:99:0,322,4095 0/0:71,0:71:99:0,196,2384 0/0:102,0:102:99:0,292,3598 0/0:112,1:113:99:0,265,3725 0/0:100,0:100:99:0,280,3483 0/0:125,0:125:99:0,331,4118 0/0:110,0:110:99:0,304,3763 0/0:97,0:97:99:0,274,3396 0/1:51,57:108:99:1600,0,1470 0/1:64,53:117:99:1412,0,1906 0/0:117,0:117:99:0,328,4063 10 97443315 . C CT 2417.95 . AC=31;AF=0.369;AN=84;BaseQRankSum=3.720;DP=3681;DS;FS=2782.326;HRun=2;HaplotypeScore=225.1113;InbreedingCoeff=-0.5688;MQ=59.26;MQ0=0;MQRankSum=1.550;QD=0.87;ReadPosRankSum=-22.591 GT:AD:DP:GQ:PL 0/1:44,0:44:97.76:98,0,689 0/1:55,0:55:23.73:24,0,974 0/0:66,0:66:19.34:0,19,1072 0/1:147,0:147:31.33:31,0,2380 0/1:147,0:146:99:119,0,2441 0/1:127,0:126:99:267,0,2035 0/0:80,40:117:28.90:0,29,2034 0/1:96,0:94:99:147,0,1652 0/1:85,0:85:99:186,0,1482 0/1:65,0:65:11.33:11,0,1200 0/1:66,0:66:16.83:17,0,1140 0/0:73,0:72:8.32:0,8,1293 0/1:68,0:68:29.56:30,0,1122 0/0:63,0:63:24.46:0,24,1373 0/1:233,0:233:99:298,0,3917 0/1:44,0:44:36.32:36,0,602 0/1:66,0:66:34.77:35,0,1213 0/1:53,0:53:99:191,0,708 0/1:127,0:127:99:100,0,2117 0/1:133,0:133:1.78:2,0,2605 0/1:146,0:146:71.40:71,0,2567 0/0:87,0:87:45.49:0,45,1868 0/1:154,0:154:72.35:72,0,2567 0/1:93,0:91:0.44:0,0,1436 0/0:107,0:106:54.77:0,55,1847 0/1:86,0:85:40.33:40,0,1348 0/0:51,1:52:63.86:0,64,1035 0/0:64,0:63:0.40:0,0,1014 0/1:64,0:64:29.92:30,0,1197 0/1:64,0:64:53.26:53,0,1029 0/1:47,0:47:24.24:24,0,932 0/0:137,0:137:99:0,115,2874 0/1:59,24:83:99:119,0,1021 0/1:50,0:50:61.48:61,0,1070 0/0:59,0:59:11.40:0,11,1049 0/1:85,0:85:99:149,0,1321 0/1:97,0:97:40.51:41,0,1737 0/1:70,0:70:4.58:5,0,1314 0/1:59,0:59:51.75:52,0,942 0/1:75,1:76:99:214,0,1120 0/1:54,0:54:73.90:74,0,880 0/0:69,0:69:35.38:0,35,1279 10 97443316 . TTCCCAACTATATAGCCAGGA T 2126.66 . AC=28;AF=0.333;AN=84;BaseQRankSum=-1.013;DP=3636;DS;FS=2738.421;HRun=0;HaplotypeScore=1196.2415;InbreedingCoeff=-0.5042;MQ=59.28;MQ0=0;MQRankSum=-0.509;QD=0.87;ReadPosRankSum=-21.710 GT:AD:DP:GQ:PL 0/1:44,0:44:97.72:98,0,5060 0/1:53,0:53:17.67:18,0,7793 0/0:65,0:65:34.68:0,35,9570 0/1:150,0:150:10.19:10,0,21247 0/1:141,0:140:99:103,0,20278 0/1:126,0:125:99:255,0,17281 0/0:122,0:119:41.97:0,42,16771 0/1:99,0:96:99:132,0,14024 0/1:86,0:86:99:171,0,12731 0/1:64,0:64:8.29:8,0,9512 0/1:64,0:64:7.34:7,0,9347 0/0:68,0:67:22.37:0,22,10685 0/1:50,15:65:20.50:21,0,9385 0/0:61,0:61:24.50:0,25,10275 0/1:227,0:227:99:274,0,31321 0/1:44,0:44:30.28:30,0,5062 0/1:66,0:66:25.69:26,0,10006 0/1:53,0:53:99:182,0,6666 0/1:93,34:127:87.98:88,0,17718 0/0:134,0:134:7.27:0,7,19494 0/1:107,35:142:41.21:41,0,21187 0/0:85,0:85:48.51:0,49,14298 0/1:156,0:156:45.19:45,0,21994 0/0:90,0:88:20.68:0,21,12976 0/0:106,0:105:40:0,40,15408 0/1:84,0:83:37.24:37,0,10859 0/0:50,0:50:66.90:0,67,7108 0/0:65,0:64:9.45:0,9,8489 0/1:63,0:63:56.02:56,0,8991 0/1:62,0:62:50.18:50,0,8443 0/1:46,0:46:20.52:21,0,7329 0/0:137,0:137:99:0,124,20976 0/1:82,0:82:99:104,0,8926 0/1:49,0:49:58.44:58,0,8906 0/0:58,0:58:14.44:0,14,8146 0/1:83,0:83:99:140,0,11117 0/1:96,0:96:28.40:28,0,14228 0/0:71,0:71:4.70:0,5,10390 0/1:57,0:57:42.68:43,0,7844 0/1:74,0:74:99:196,0,9435 0/1:52,0:52:70.86:71,0,6550 0/0:69,0:69:31.43:0,31,10122 10 97443318 . C T 1648.74 . AC=24;AF=0.286;AN=84;BaseQRankSum=-23.294;DP=3415;DS;Dels=0.02;FS=2062.536;HRun=2;HaplotypeScore=25.9204;InbreedingCoeff=-0.4061;MQ=59.34;MQ0=0;MQRankSum=5.068;QD=0.88;ReadPosRankSum=-19.517 GT:AD:DP:GQ:PL 0/1:24,16:40:67.10:67,0,656 0/0:35,13:48:27.93:0,28,1003 0/0:40,24:64:45.06:0,45,1236 0/0:93,52:145:72.82:0,73,2785 0/1:89,48:137:63.51:64,0,2811 0/1:74,46:120:99:177,0,2195 0/0:86,6:92:99:0,199,2612 0/1:57,36:93:73.88:74,0,1903 0/1:56,30:86:94.55:95,0,1663 0/1:40,23:63:2.92:3,0,1218 0/1:42,20:62:29.87:30,0,1200 0/1:47,18:65:42.42:42,0,1335 0/0:44,3:47:99:0,105,1299 0/0:46,16:62:70.47:0,70,1361 0/1:138,78:216:99:265,0,4033 0/1:26,17:43:32.19:32,0,577 0/1:44,19:63:23.90:24,0,1170 0/1:27,20:47:99:172,0,729 0/0:78,7:85:99:0,187,2221 0/0:92,32:125:66.20:0,66,2570 0/0:94,4:99:99:0,239,2754 0/0:59,25:84:99:0,117,1878 0/1:96,54:152:20.31:20,0,2881 0/0:60,25:85:42.25:0,42,1744 0/0:62,35:97:78.50:0,78,2016 0/1:47,29:76:36.19:36,0,1430 0/0:32,13:45:59.57:0,60,1016 0/0:40,16:56:49.44:0,49,1116 0/1:41,18:59:10.18:10,0,1154 0/1:35,23:58:75.44:75,0,1027 0/1:30,17:47:32.71:33,0,865 0/0:97,36:133:84.69:0,85,2621 0/0:58,6:64:96.69:0,97,1465 0/1:39,9:48:65.40:65,0,1098 0/0:39,13:52:12.88:0,13,1109 0/1:46,25:71:99:120,0,1393 0/1:64,25:89:24.16:24,0,1654 0/1:48,20:68:46.93:47,0,1316 0/1:42,16:58:57.30:57,0,1102 0/1:45,26:71:99:227,0,1247 0/1:33,17:50:61.65:62,0,907 0/0:43,22:65:1.84:3,0,1321 10 97599537 . G C 5107.87 . AC=4;AF=0.048;AN=84;BaseQRankSum=-2.802;DP=4890;DS;Dels=0.00;FS=4.002;HRun=1;HaplotypeScore=1.9745;InbreedingCoeff=-0.0500;MQ=59.59;MQ0=0;MQRankSum=0.069;QD=15.16;ReadPosRankSum=-1.042 GT:AD:DP:GQ:PL 0/0:98,0:98:99:0,274,3490 0/0:99,0:100:99:0,286,3598 0/0:93,0:93:99:0,262,3278 0/0:174,0:174:99:0,509,6766 0/0:180,0:180:99:0,536,7232 0/0:134,0:134:99:0,382,5145 0/0:121,0:121:99:0,352,4750 0/0:158,0:158:99:0,466,6213 0/0:114,0:114:99:0,319,4028 0/0:101,0:101:99:0,286,3608 0/0:100,0:100:99:0,283,3551 0/1:32,51:83:99:1585,0,890 0/1:36,35:71:99:1063,0,1090 0/0:102,0:102:99:0,289,3672 0/0:242,1:243:99:0,636,8507 0/0:101,0:101:99:0,286,3568 0/0:111,0:111:99:0,319,4012 0/0:104,0:104:99:0,298,3723 0/0:155,0:156:99:0,427,5307 0/0:124,0:124:99:0,349,4329 0/0:147,0:149:99:0,406,5137 0/0:112,0:112:99:0,322,4079 0/0:189,0:191:99:0,560,7557 0/0:128,1:130:99:0,376,5026 0/0:142,0:142:99:0,427,5711 0/0:123,0:123:99:0,364,4903 0/0:75,0:75:99:0,208,2623 0/0:102,0:102:99:0,286,3569 0/0:92,0:92:99:0,265,3303 0/1:47,45:92:99:1356,0,1499 0/1:50,41:91:99:1104,0,1625 0/0:141,0:141:99:0,391,4970 0/0:108,0:108:99:0,289,3660 0/0:90,0:90:99:0,265,3312 0/0:113,0:113:99:0,334,4153 0/0:102,1:103:99:0,263,3687 0/0:119,0:119:99:0,340,4282 0/0:88,0:88:99:0,253,3182 0/0:102,0:102:99:0,301,3746 0/0:102,0:103:99:0,295,3719 0/0:78,0:78:99:0,235,2902 0/0:78,0:78:99:0,226,2841 10 97607223 . C T 1221.83 . AC=1;AF=0.012;AN=84;BaseQRankSum=-9.973;DP=4824;DS;Dels=0.00;FS=8.585;HRun=1;HaplotypeScore=1.7915;InbreedingCoeff=-0.0120;MQ=59.54;MQ0=0;MQRankSum=0.117;QD=11.31;ReadPosRankSum=-1.941 GT:AD:DP:GQ:PL 0/0:80,0:80:99:0,223,2852 0/0:93,0:93:99:0,250,3186 0/0:85,0:85:99:0,244,3123 0/0:186,0:187:99:0,476,6495 0/0:187,0:187:99:0,485,6719 0/0:169,0:169:99:0,451,6134 0/0:182,0:182:99:0,488,6754 0/0:122,0:122:99:0,319,4425 0/0:81,0:81:99:0,217,2785 0/0:81,1:82:99:0,187,2758 0/0:95,0:95:99:0,256,3290 0/0:110,0:110:99:0,304,3917 0/0:107,0:107:99:0,283,3622 0/0:90,0:90:99:0,247,3173 0/0:249,0:249:99:0,680,8746 0/0:77,0:77:99:0,217,2775 0/0:96,0:96:99:0,262,3344 0/0:91,0:91:99:0,253,3258 0/0:111,0:111:99:0,301,3881 0/0:115,0:115:99:0,301,3886 0/0:137,0:137:99:0,349,4548 0/0:78,0:78:99:0,208,2689 0/0:202,0:202:99:0,521,7266 0/0:142,0:142:99:0,382,5245 0/0:209,0:209:99:0,530,7372 0/0:140,0:140:99:0,361,4928 0/0:63,0:63:99:0,181,2323 0/0:90,0:90:99:0,244,3145 0/0:71,0:71:99:0,196,2513 0/0:107,0:107:99:0,289,3732 0/0:92,0:92:99:0,259,3333 0/0:118,0:118:99:0,310,4048 0/0:87,0:87:99:0,223,2896 0/0:85,0:85:99:0,235,3013 0/0:90,0:90:99:0,241,3131 0/1:62,46:108:99:1268,0,1819 0/0:121,0:121:99:0,319,4138 0/0:80,0:80:99:0,220,2831 0/0:86,0:86:99:0,232,2981 0/0:88,0:88:99:0,247,3136 0/0:95,0:95:99:0,265,3380 0/0:126,0:126:99:0,343,4390 10 97772358 . A G 9944.70 . AC=11;AF=0.131;AN=84;BaseQRankSum=-7.484;DP=3449;Dels=0.00;FS=7.896;HRun=0;HaplotypeScore=1.1493;InbreedingCoeff=-0.1507;MQ=59.49;MQ0=0;MQRankSum=-1.323;QD=11.67;ReadPosRankSum=-0.380 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,138,1698 0/1:29,23:52:99:640,0,853 0/1:20,24:44:99:626,0,607 0/0:138,0:138:99:0,367,4616 0/0:148,0:148:99:0,394,5018 0/0:146,0:146:99:0,397,5160 0/0:144,0:144:99:0,379,4881 0/0:130,0:130:99:0,349,4420 0/0:54,0:54:99:0,156,1898 0/0:63,0:63:99:0,175,2145 0/1:34,32:66:99:824,0,1011 0/0:74,0:74:99:0,214,2624 0/0:57,0:57:99:0,163,2000 0/0:58,0:58:99:0,160,2000 0/1:110,92:202:99:2339,0,3108 0/1:19,13:32:99:343,0,602 0/0:59,0:59:99:0,166,2042 0/0:62,0:62:99:0,181,2205 0/0:81,0:81:99:0,226,2795 0/0:81,0:81:99:0,238,2904 0/0:89,0:90:99:0,244,3016 0/0:51,0:51:99:0,150,1832 0/0:171,0:171:99:0,442,5643 0/1:76,50:127:99:1381,0,2252 0/0:153,0:153:99:0,418,5287 0/1:62,50:112:99:1369,0,1881 0/0:43,0:43:99:0,105,1332 0/0:76,1:77:99:0,186,2521 0/0:34,0:34:96.29:0,96,1173 0/0:54,1:55:99:0,150,1864 0/1:27,14:41:99:369,0,809 0/0:92,0:92:99:0,235,2974 0/0:69,0:69:99:0,190,2332 0/0:62,0:62:99:0,175,2134 0/0:75,0:75:99:0,211,2596 0/0:74,0:74:99:0,202,2515 0/0:83,0:83:99:0,238,2921 0/1:36,27:63:99:763,0,1046 0/0:64,0:64:99:0,187,2278 0/1:37,33:70:99:944,0,1085 0/1:29,14:43:99:348,0,886 0/0:61,0:61:99:0,169,2094 10 97959905 . C T 329.29 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.538;DP=1373;Dels=0.00;FS=1.510;HRun=0;HaplotypeScore=1.0502;InbreedingCoeff=-0.0244;MQ=59.27;MQ0=0;MQRankSum=-0.414;QD=9.68;ReadPosRankSum=-0.071 GT:AD:DP:GQ:PL 0/0:26,0:26:72.17:0,72,763 0/0:24,0:24:66.16:0,66,712 0/0:26,0:26:63.14:0,63,681 0/0:73,0:73:99:0,196,2297 0/0:42,0:42:99:0,117,1380 0/0:49,0:49:99:0,126,1563 0/0:37,0:37:99:0,99,1211 0/0:34,0:34:84.24:0,84,999 0/0:18,0:18:39.11:0,39,430 0/0:34,0:34:90.23:0,90,999 0/0:21,0:21:60.13:0,60,649 0/0:39,0:40:99:0,99,1092 0/0:17,0:17:42.09:0,42,443 0/0:26,0:26:69.17:0,69,749 0/0:101,0:103:99:0,256,2749 0/0:16,0:16:42.08:0,42,445 0/0:24,0:24:63.15:0,63,662 0/0:28,0:28:78.19:0,78,849 0/0:35,0:35:90.21:0,90,970 0/0:41,0:41:99:0,99,1113 0/0:44,0:45:99:0,117,1250 0/0:30,0:31:78.16:0,78,854 0/0:55,0:56:99:0,150,1798 0/0:34,0:34:84.24:0,84,1020 0/0:45,0:45:99:0,126,1517 0/0:29,0:29:81.23:0,81,959 0/1:9,6:15:99:160,0,172 0/0:26,0:26:63.17:0,63,726 0/1:11,8:19:99:232,0,289 0/0:16,0:16:42.08:0,42,440 0/0:26,0:26:78.15:0,78,820 0/0:52,0:52:99:0,138,1532 0/0:30,0:30:84.19:0,84,903 0/0:26,0:27:66.14:0,66,716 0/0:21,0:21:48.13:0,48,534 0/0:34,0:34:87.22:0,87,955 0/0:44,0:44:99:0,114,1193 0/0:27,0:27:69.15:0,69,739 0/0:26,0:26:75.20:0,75,818 0/0:14,0:15:36.09:0,36,383 0/0:20,0:20:54.13:0,54,597 0/0:21,0:21:60.15:0,60,645 10 98380137 . T C 18973.48 . 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A C 5143.86 . AC=37;AF=0.440;AN=84;BaseQRankSum=-33.518;DP=4375;DS;Dels=0.00;FS=2346.876;HRun=1;HaplotypeScore=2.5684;InbreedingCoeff=-0.7685;MQ=57.16;MQ0=0;MQRankSum=2.681;QD=1.41;ReadPosRankSum=-26.993 GT:AD:DP:GQ:PL 0/1:40,34:74:99:191,0,1173 0/1:44,33:77:26.49:26,0,1321 0/1:28,32:60:56.62:57,0,816 0/1:83,91:174:99:333,0,2313 0/1:75,77:152:99:313,0,2257 0/1:92,78:171:63.08:63,0,2572 0/1:59,68:127:95.59:96,0,1792 0/0:73,56:129:5.07:0,5,2109 0/1:47,45:92:99:174,0,1387 0/1:39,30:69:99:105,0,1033 0/1:43,40:83:99:112,0,1096 0/1:44,36:80:58.33:58,0,1304 0/1:44,31:76:58.21:58,0,1207 0/1:48,41:89:99:265,0,1368 0/1:141,109:250:99:607,0,4002 0/1:37,35:72:99:116,0,1109 0/1:41,28:69:51.77:52,0,1256 0/1:42,29:71:99:184,0,1159 0/1:68,42:112:99:306,0,1935 0/0:96,73:171:5.96:0,6,2769 0/1:78,40:118:66.63:67,0,2131 0/1:46,43:89:99:216,0,1239 0/1:81,94:175:99:315,0,2217 0/1:66,61:127:99:173,0,1993 0/0:80,76:156:42.40:0,42,2271 0/0:77,53:130:20.93:0,21,2347 0/1:47,36:83:1.26:0,5,1361 0/1:39,36:75:99:164,0,1064 0/1:43,42:85:78.58:79,0,1131 0/1:50,31:81:99:108,0,1451 0/1:36,30:66:99:104,0,1074 0/0:89,47:137:39.88:0,40,2562 0/1:44,42:86:83.54:84,0,1251 0/1:42,37:79:47.11:47,0,1315 0/1:45,41:86:99:217,0,1263 0/1:56,40:96:29.58:30,0,1620 0/1:65,42:107:99:183,0,2033 0/1:56,30:86:34.64:35,0,1620 0/1:39,32:71:36.12:36,0,1165 0/1:60,40:101:99:128,0,1831 0/1:32,22:54:6.24:6,0,1037 0/1:46,43:89:38.58:39,0,1374 10 98380277 . C T 46428.38 . AC=61;AF=0.726;AN=84;BaseQRankSum=10.207;DP=2015;Dels=0.00;FS=7.668;HRun=1;HaplotypeScore=1.1576;InbreedingCoeff=0.2217;MQ=59.39;MQ0=0;MQRankSum=0.574;QD=26.32;ReadPosRankSum=-0.434 GT:AD:DP:GQ:PL 1/1:0,26:26:78.22:932,78,0 1/1:0,22:23:63.18:738,63,0 1/1:0,30:30:84.26:1026,84,0 1/1:0,74:75:99:2635,217,0 0/1:35,30:65:99:797,0,1041 0/1:35,30:65:99:925,0,920 0/0:50,1:51:99:0,147,1733 1/1:0,61:61:99:2159,178,0 1/1:0,45:45:99:1601,132,0 1/1:0,29:29:84.25:1018,84,0 1/1:0,35:35:96.29:1174,96,0 0/1:24,24:49:99:725,0,628 1/1:0,26:26:75.21:901,75,0 0/0:38,0:39:99:0,105,1192 1/1:0,130:131:99:4130,343,0 1/1:0,36:36:99:1248,105,0 0/1:21,16:37:99:425,0,562 0/1:19,13:32:99:367,0,522 1/1:0,67:68:99:2211,178,0 0/1:35,30:67:99:791,0,941 1/1:0,59:60:99:1944,162,0 0/1:19,23:42:99:673,0,514 1/1:0,76:76:99:2668,220,0 0/0:60,0:60:99:0,165,1980 0/1:34,27:61:99:713,0,998 0/0:55,0:55:99:0,141,1752 1/1:0,25:25:72.20:854,72,0 1/1:0,39:39:99:1393,117,0 0/1:27,15:42:99:363,0,745 1/1:0,35:35:99:1210,99,0 1/1:0,27:27:75.23:914,75,0 1/1:0,75:75:99:2452,205,0 0/1:27,19:47:99:521,0,691 0/1:14,21:35:99:551,0,346 1/1:0,33:33:90.26:1092,90,0 0/0:46,0:46:99:0,129,1439 1/1:1,61:62:99:1980,165,0 1/1:0,32:32:90.27:1087,90,0 1/1:0,46:46:99:1608,135,0 1/1:0,37:37:99:1326,111,0 0/1:15,19:34:99:549,0,377 0/1:27,28:56:99:728,0,745 10 98392816 . T C 1890.27 . AC=6;AF=0.071;AN=84;BaseQRankSum=-9.594;DP=910;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2374;InbreedingCoeff=-0.0774;MQ=59.32;MQ0=0;MQRankSum=1.620;QD=12.86;ReadPosRankSum=-0.968 GT:AD:DP:GQ:PL 0/0:20,0:20:60.18:0,60,724 0/1:15,13:28:99:334,0,424 0/1:10,10:20:99:269,0,296 0/1:7,14:21:99:364,0,195 0/0:16,0:16:45.14:0,45,562 0/0:13,0:13:39.12:0,39,479 0/0:17,0:17:51.15:0,51,620 0/0:15,0:15:45.14:0,45,549 0/0:22,0:22:63.19:0,63,761 0/0:14,0:14:42.13:0,42,509 0/0:25,0:25:66.21:0,66,829 0/0:17,0:17:51.16:0,51,621 0/0:11,0:11:33.10:0,33,396 0/0:17,0:17:51.16:0,51,620 0/0:59,0:59:99:0,172,2047 0/0:18,0:18:54.16:0,54,649 0/0:30,0:30:84.26:0,84,1034 0/0:19,0:19:54.17:0,54,659 0/0:27,0:27:81.25:0,81,1005 0/0:25,0:25:69.21:0,69,843 0/0:31,0:31:93.28:0,93,1137 0/0:30,0:30:87.26:0,87,1047 0/1:11,6:17:99:144,0,353 0/0:5,0:5:15.05:0,15,188 0/0:14,0:14:42.10:0,42,486 0/0:10,0:10:30.09:0,30,371 0/0:20,0:20:60.19:0,60,731 0/1:13,19:32:99:509,0,357 0/0:16,0:16:48.14:0,48,568 0/0:19,0:19:54.15:0,54,646 0/0:21,0:21:63.20:0,63,772 0/0:27,0:27:75.23:0,75,936 0/0:24,0:24:66.21:0,66,819 0/0:20,0:20:60.19:0,60,737 0/0:22,0:22:66.21:0,66,813 0/0:20,0:20:60.18:0,60,723 0/0:30,0:30:87.25:0,87,1049 0/0:27,0:27:78.24:0,78,946 0/1:15,14:29:99:375,0,460 0/0:19,0:19:57.18:0,57,693 0/0:22,0:22:66.20:0,66,791 0/0:21,0:21:60.19:0,60,738 10 98411293 . G A 515.42 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.359;DP=4067;DS;Dels=0.00;FS=2.997;HRun=0;HaplotypeScore=1.6570;InbreedingCoeff=-0.0120;MQ=59.48;MQ0=0;MQRankSum=0.478;QD=9.54;ReadPosRankSum=0.054 GT:AD:DP:GQ:PL 0/0:88,0:88:99:0,244,2867 0/0:73,0:73:99:0,199,2369 0/0:79,0:79:99:0,205,2483 0/0:147,0:147:99:0,382,4927 0/0:134,0:134:99:0,364,4702 0/0:130,0:130:99:0,343,4411 0/0:86,0:86:99:0,226,2925 0/0:113,0:113:99:0,292,3830 0/0:103,0:103:99:0,271,3371 0/0:83,0:83:99:0,220,2662 0/0:92,0:92:99:0,256,2996 0/0:85,0:85:99:0,232,2758 0/0:67,0:67:99:0,187,2235 0/0:85,0:85:99:0,229,2755 0/0:235,0:236:99:0,602,7337 0/0:53,0:53:99:0,144,1708 0/0:86,0:86:99:0,235,2809 0/0:82,0:82:99:0,214,2558 0/0:136,0:138:99:0,352,4348 0/0:157,0:157:99:0,373,4742 0/0:129,0:130:99:0,319,3865 0/0:66,0:66:99:0,168,2055 0/0:151,0:151:99:0,397,5187 0/0:133,0:133:99:0,337,4393 0/0:109,0:109:99:0,280,3614 0/0:96,1:97:99:0,256,3328 0/0:55,0:55:99:0,153,1846 0/0:89,0:89:99:0,238,2851 0/0:69,0:69:99:0,184,2249 0/0:77,0:77:99:0,202,2451 0/0:54,0:54:99:0,156,1873 0/0:133,0:133:99:0,340,4215 0/1:34,20:54:99:562,0,953 0/0:77,0:77:99:0,214,2516 0/0:83,0:83:99:0,238,2788 0/0:94,0:94:99:0,262,3169 0/0:92,0:92:99:0,241,2902 0/0:79,0:79:99:0,220,2659 0/0:81,0:81:99:0,217,2573 0/0:65,0:66:99:0,187,2213 0/0:75,0:76:99:0,211,2458 0/0:85,0:85:99:0,238,2858 10 98762051 . T G 746.77 . 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T G 1542.02 . 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A AG 1871.63 . 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GTGCCCT G 6967.18 . 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T G 15.98 . 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G A 775.96 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.141;DP=1949;Dels=0.00;FS=0.691;HRun=0;HaplotypeScore=1.0778;InbreedingCoeff=-0.0244;MQ=59.12;MQ0=0;MQRankSum=0.359;QD=10.93;ReadPosRankSum=1.734 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,114,1457 0/0:48,0:48:99:0,123,1545 0/0:32,0:32:90.26:0,90,1113 0/0:70,0:70:99:0,199,2614 0/0:58,0:58:99:0,166,2235 0/0:47,0:47:99:0,120,1655 0/0:23,0:23:66.22:0,66,896 0/0:48,0:48:99:0,126,1688 0/0:49,0:49:99:0,132,1634 0/0:43,0:43:99:0,120,1490 0/0:35,0:35:99:0,102,1262 0/0:35,0:35:99:0,105,1274 0/0:32,0:32:81.25:0,81,1020 0/0:54,0:54:99:0,153,1884 0/0:126,0:126:99:0,316,4011 0/0:45,0:45:99:0,123,1521 0/0:36,0:36:99:0,105,1280 0/0:34,0:34:93.29:0,93,1164 0/0:64,0:64:99:0,178,2181 0/0:69,0:69:99:0,190,2378 0/0:47,0:47:99:0,126,1555 0/0:44,0:44:99:0,123,1548 0/0:94,0:94:99:0,241,3252 0/1:14,15:29:99:426,0,404 0/0:56,0:56:99:0,150,2021 0/1:25,17:42:99:412,0,753 0/0:40,0:40:99:0,117,1449 0/0:45,0:45:99:0,135,1652 0/0:40,0:40:99:0,111,1378 0/0:29,0:29:84.21:0,84,1015 0/0:42,0:42:99:0,120,1500 0/0:52,0:52:99:0,129,1641 0/0:38,0:38:99:0,102,1267 0/0:42,0:42:99:0,117,1467 0/0:30,0:30:84.27:0,84,1067 0/0:44,0:45:99:0,126,1571 0/0:54,0:54:99:0,135,1688 0/0:54,0:54:99:0,156,1922 0/0:26,0:26:75.24:0,75,942 0/0:38,0:38:99:0,111,1372 0/0:31,0:31:87.26:0,87,1070 0/0:39,0:39:99:0,108,1319 10 98924600 . G A 4647.62 . AC=5;AF=0.060;AN=84;BaseQRankSum=0.168;DP=4182;DS;Dels=0.00;FS=0.843;HRun=0;HaplotypeScore=3.0657;InbreedingCoeff=-0.0633;MQ=59.19;MQ0=0;MQRankSum=1.235;QD=11.15;ReadPosRankSum=1.871 GT:AD:DP:GQ:PL 0/0:83,1:84:99:0,186,2502 0/0:79,0:79:99:0,214,2526 0/0:65,0:65:99:0,162,1887 0/0:228,5:233:99:0,453,7186 0/0:202,1:203:99:0,481,6677 0/0:148,0:149:99:0,367,4799 0/0:117,3:121:99:0,230,3756 0/0:131,0:131:99:0,325,4221 0/0:77,0:77:99:0,192,2254 0/0:77,0:78:99:0,192,2276 0/0:70,0:71:99:0,177,2040 0/0:69,0:69:99:0,177,2028 0/0:60,0:60:99:0,138,1660 0/0:61,0:62:99:0,165,1915 0/0:249,1:250:99:0,599,7387 0/0:90,2:92:99:0,183,2804 0/0:76,0:76:99:0,196,2247 0/0:64,1:65:99:0,135,1902 0/0:108,0:109:99:0,280,3221 0/0:149,2:151:99:0,340,4400 0/0:114,0:115:99:0,283,3336 0/0:79,0:79:99:0,208,2428 0/0:212,1:214:99:0,503,6945 0/1:56,35:91:99:849,0,1628 0/1:72,64:136:99:1606,0,1940 0/0:131,0:131:99:0,334,4278 0/1:38,18:56:99:482,0,919 0/1:33,28:63:99:743,0,864 0/0:80,0:80:99:0,202,2401 0/0:72,0:72:99:0,180,2106 0/1:33,38:71:99:968,0,885 0/0:124,0:124:99:0,298,3586 0/0:74,0:74:99:0,184,2166 0/0:59,0:62:99:0,159,1831 0/0:75,0:75:99:0,202,2359 0/0:75,0:75:99:0,193,2280 0/0:94,0:95:99:0,244,2729 0/0:74,0:74:99:0,189,2169 0/0:73,0:73:99:0,193,2213 0/0:73,0:73:99:0,202,2328 0/0:60,0:60:99:0,150,1796 0/0:63,0:63:99:0,186,2141 10 99019177 . A G 188592.39 . AC=79;AF=0.940;AN=84;BaseQRankSum=-15.322;DP=6436;DS;Dels=0.00;FS=0.685;HRun=0;HaplotypeScore=3.0946;InbreedingCoeff=-0.0633;MQ=59.55;MQ0=0;MQRankSum=-0.374;QD=29.30;ReadPosRankSum=-1.571 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4562,400,0 1/1:0,131:131:99:4122,364,0 1/1:0,101:101:99:3122,277,0 1/1:0,250:250:99:8251,671,0 1/1:0,250:250:99:8570,689,0 1/1:0,244:244:99:8119,653,0 1/1:0,187:187:99:6071,490,0 1/1:0,191:191:99:6256,506,0 1/1:0,108:108:99:3285,292,0 1/1:0,95:95:99:3030,268,0 1/1:0,136:136:99:4053,355,0 0/1:47,49:96:99:1274,0,1368 0/1:48,45:93:99:1168,0,1364 0/1:63,53:116:99:1344,0,1906 1/1:0,250:250:99:7535,674,0 1/1:0,91:91:99:2872,256,0 1/1:0,137:137:99:4322,388,0 1/1:0,124:124:99:3874,346,0 1/1:0,223:223:99:6645,578,0 1/1:0,220:220:99:6767,590,0 1/1:0,208:209:99:6218,553,0 1/1:2,124:126:99:3691,288,0 1/1:0,250:250:99:8483,683,0 0/1:110,110:220:99:2910,0,3008 1/1:0,189:189:99:6201,502,0 0/1:102,90:192:99:2463,0,2947 1/1:0,110:110:99:3581,316,0 1/1:0,124:124:99:3838,343,0 1/1:0,102:102:99:3184,283,0 1/1:0,107:107:99:3248,289,0 1/1:0,133:133:99:4267,376,0 1/1:0,192:192:99:5877,502,0 1/1:0,100:100:99:3032,265,0 1/1:1,137:138:99:4257,349,0 1/1:0,106:106:99:3233,286,0 1/1:1,121:122:99:3493,272,0 1/1:0,191:191:99:5532,472,0 1/1:0,132:132:99:4064,361,0 1/1:0,125:125:99:3967,358,0 1/1:0,153:153:99:4709,412,0 1/1:0,108:108:99:3370,304,0 1/1:0,119:119:99:3730,334,0 10 99116903 . C T 26203.43 . 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G A 664.52 . 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G A 40947.58 . 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C T 2993.27 . 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T C 1382.05 . 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T G 1667.89 . 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T G 828.04 . AC=24;AF=0.286;AN=84;BaseQRankSum=-15.647;DP=3010;Dels=0.00;FS=1497.576;HRun=2;HaplotypeScore=2.6236;InbreedingCoeff=-0.4048;MQ=58.75;MQ0=1;MQRankSum=1.085;QD=0.45;ReadPosRankSum=-18.400 GT:AD:DP:GQ:PL 0/0:36,25:61:2.29:0,2,964 0/1:34,28:62:10.97:11,0,980 0/0:30,23:53:0.95:0,1,923 0/1:81,86:167:78.29:78,0,2336 0/1:75,74:149:99:116,0,2315 0/0:59,50:111:24.61:0,25,1790 0/1:39,44:83:74.79:75,0,1144 0/0:51,52:103:64.93:0,65,1675 0/1:32,19:51:10.75:11,0,842 0/1:34,16:50:9.01:9,0,931 0/0:28,18:46:80.69:0,81,914 0/0:35,20:55:44.29:0,44,1119 0/0:23,16:39:61.38:0,61,672 0/1:20,25:45:78.25:78,0,628 0/1:96,73:169:67.58:68,0,2700 0/1:25,17:42:46.20:46,0,776 0/1:30,23:53:26.74:27,0,898 0/0:27,19:46:21.01:0,21,782 0/1:55,43:98:55.98:56,0,1549 0/0:65,43:108:13.92:0,14,1785 0/0:56,34:90:4.96:0,5,1569 0/1:26,30:56:63.96:64,0,736 0/1:70,75:145:58.72:59,0,1943 0/1:44,42:86:46.97:47,0,1298 0/1:60,52:112:42.99:43,0,1599 0/0:44,50:94:99:0,99,1352 0/0:23,11:34:34.31:0,34,725 0/0:22,22:44:36.57:0,37,696 0/1:21,13:35:14.23:14,0,582 0/0:27,22:49:4.63:0,5,657 0/0:25,13:38:72.20:0,72,819 0/0:70,35:105:99:0,113,2093 0/1:40,28:68:57.93:58,0,1228 0/1:31,24:55:9.20:9,0,929 0/1:22,19:41:21.99:22,0,684 0/1:32,17:49:1.99:2,0,891 0/1:44,25:69:1.52:2,0,1202 0/0:32,17:49:10.36:0,10,801 0/1:32,20:52:9.18:9,0,888 0/1:31,29:60:33.02:33,0,894 0/0:22,21:44:10.64:0,11,585 0/1:22,22:44:55.87:56,0,591 10 99219885 . G A 47030.27 . AC=47;AF=0.560;AN=84;BaseQRankSum=2.204;DP=2484;Dels=0.00;FS=9.437;HRun=0;HaplotypeScore=1.2679;InbreedingCoeff=-0.0144;MQ=59.31;MQ0=0;MQRankSum=-0.638;QD=22.71;ReadPosRankSum=-0.171 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2079,168,0 1/1:0,56:56:99:1910,153,0 0/1:19,16:35:99:433,0,539 0/1:51,28:79:99:714,0,1699 0/1:28,44:72:99:1414,0,814 0/0:75,0:75:99:0,208,2642 0/0:43,0:43:99:0,126,1597 0/0:73,0:73:99:0,205,2527 0/1:20,26:46:99:829,0,503 1/1:0,42:42:99:1464,120,0 0/0:43,0:43:99:0,117,1392 0/1:24,22:46:99:569,0,629 0/1:13,14:27:99:434,0,328 1/1:0,39:39:99:1325,108,0 1/1:0,146:146:99:4814,388,0 1/1:0,52:52:99:1809,150,0 1/1:0,49:49:99:1682,138,0 1/1:1,35:36:74.90:1266,75,0 1/1:1,74:75:99:2436,166,0 1/1:0,113:113:99:3675,298,0 1/1:0,84:84:99:2997,244,0 0/1:32,27:59:99:816,0,843 0/1:56,37:93:99:1111,0,1683 0/1:28,27:55:99:817,0,862 0/1:29,28:57:99:846,0,855 0/1:26,35:61:99:1067,0,718 0/1:29,21:50:99:525,0,865 1/1:0,69:69:99:2420,199,0 0/1:21,25:46:99:732,0,553 0/0:54,0:54:99:0,144,1725 0/0:39,0:39:99:0,114,1309 0/1:51,44:95:99:1252,0,1355 0/1:29,44:73:99:1249,0,705 0/0:47,0:47:99:0,138,1649 0/0:39,0:39:99:0,108,1262 0/1:26,34:60:99:1011,0,751 0/1:31,35:66:99:1021,0,792 0/1:26,20:46:99:536,0,692 0/1:24,19:43:99:571,0,717 1/1:0,43:43:99:1541,123,0 0/1:21,26:48:99:809,0,580 0/1:24,27:51:99:854,0,638 10 99219987 . G C 566.79 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.006;DP=1940;Dels=0.00;FS=7.154;HRun=0;HaplotypeScore=0.8855;InbreedingCoeff=-0.0120;MQ=59.20;MQ0=0;MQRankSum=-0.008;QD=16.67;ReadPosRankSum=-0.234 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,120,1509 0/0:33,0:33:90.27:0,90,1142 0/0:29,0:29:78.25:0,78,1001 0/0:69,0:69:99:0,190,2537 0/0:58,0:58:99:0,160,2165 0/0:45,0:45:99:0,123,1672 0/0:29,0:29:78.24:0,78,1032 0/0:41,0:41:99:0,114,1551 0/0:52,0:52:99:0,138,1772 0/0:33,0:33:90.27:0,90,1110 0/1:13,21:34:99:613,0,399 0/0:30,0:30:90.27:0,90,1115 0/0:22,0:22:60.19:0,60,770 0/0:27,0:27:78.25:0,78,979 0/0:109,1:110:99:0,295,3797 0/0:36,0:36:99:0,108,1372 0/0:30,0:31:84.26:0,84,1065 0/0:41,0:41:99:0,117,1472 0/0:73,0:73:99:0,196,2515 0/0:82,0:82:99:0,223,2869 0/0:81,0:82:99:0,223,2842 0/0:50,0:50:99:0,138,1762 0/0:69,0:69:99:0,196,2661 0/0:29,0:29:81.27:0,81,1119 0/0:46,0:46:99:0,126,1661 0/0:21,0:21:60.19:0,60,791 0/0:41,0:41:99:0,102,1333 0/0:49,0:49:99:0,141,1775 0/0:36,0:36:99:0,105,1334 0/0:36,0:36:99:0,105,1325 0/0:37,0:37:99:0,102,1295 0/0:70,0:70:99:0,193,2492 0/0:55,0:55:99:0,156,1984 0/0:26,0:26:78.25:0,78,984 0/0:30,0:30:84.27:0,84,1069 0/0:44,0:44:99:0,123,1547 0/0:84,0:84:99:0,229,2914 0/0:41,0:41:99:0,120,1502 0/0:56,0:56:99:0,166,2050 0/0:34,1:35:99:0,99,1241 0/0:36,0:36:99:0,102,1295 0/0:47,0:48:99:0,135,1716 10 99220707 . C T 2826.47 . 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G C 37795.08 . 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G T 894.21 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.665;DP=984;Dels=0.00;FS=2.237;HRun=0;HaplotypeScore=0.3755;InbreedingCoeff=-0.0244;MQ=59.24;MQ0=0;MQRankSum=0.817;QD=11.61;ReadPosRankSum=-0.063 GT:AD:DP:GQ:PL 0/0:21,0:21:63.18:0,63,781 0/0:20,0:20:54.16:0,54,691 0/0:17,0:17:51.16:0,51,645 0/0:25,0:25:66.20:0,66,884 0/0:26,0:26:66.22:0,66,904 0/0:27,0:27:72.23:0,72,945 0/0:16,0:17:39.13:0,39,517 0/0:16,0:16:39.08:0,39,504 0/0:22,0:22:54.17:0,54,707 0/0:22,1:23:62.99:0,63,779 0/0:26,0:26:72.20:0,72,894 0/0:22,0:22:66.21:0,66,851 0/0:14,0:14:33.11:0,33,438 0/0:25,0:26:69.22:0,69,894 0/0:83,0:83:99:0,202,2559 0/0:20,0:20:57.17:0,57,712 0/0:19,0:19:45.15:0,45,591 0/0:15,0:15:45.14:0,45,571 0/0:40,0:40:99:0,105,1334 0/0:37,0:37:99:0,102,1309 0/1:20,23:43:99:626,0,540 0/0:34,0:34:87.28:0,87,1121 0/0:28,0:28:69.22:0,69,938 0/0:12,0:12:36.11:0,36,463 0/0:22,0:22:57.19:0,57,781 0/0:12,0:12:30.10:0,30,417 0/0:15,0:15:42.13:0,42,536 0/0:17,0:17:45.14:0,45,570 0/0:14,0:14:42.11:0,42,489 0/0:21,0:21:63.18:0,63,763 0/0:22,0:22:63.20:0,63,801 0/1:20,14:34:99:331,0,595 0/0:28,0:28:81.25:0,81,1006 0/0:13,0:13:36.10:0,36,432 0/0:25,0:25:72.22:0,72,903 0/0:12,0:12:33.10:0,33,413 0/0:25,0:25:69.19:0,69,838 0/0:20,0:20:51.16:0,51,662 0/0:14,1:15:36.11:0,36,465 0/0:22,0:22:60.19:0,60,764 0/0:19,0:19:57.18:0,57,711 0/0:15,0:15:42.13:0,42,526 10 99358851 . C CA 16.42 . 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G A 2629.47 . AC=4;AF=0.048;AN=84;BaseQRankSum=-3.264;DP=3117;DS;Dels=0.00;FS=1.007;HRun=0;HaplotypeScore=2.5459;InbreedingCoeff=-0.0500;MQ=59.36;MQ0=0;MQRankSum=0.133;QD=12.52;ReadPosRankSum=-1.743 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,129,1562 0/0:40,0:40:99:0,114,1366 0/1:15,19:34:99:509,0,461 0/0:172,0:173:99:0,484,6239 0/0:132,1:133:99:0,323,4675 0/0:123,0:123:99:0,337,4350 0/0:93,0:93:99:0,259,3340 0/0:101,0:101:99:0,280,3654 0/0:49,0:49:99:0,138,1649 0/0:52,0:52:99:0,144,1764 0/0:30,0:30:81.20:0,81,949 0/0:52,0:53:99:0,147,1755 0/0:32,0:33:96.28:0,96,1156 0/0:51,0:51:99:0,147,1746 0/0:158,0:159:99:0,436,5320 0/0:53,0:53:99:0,150,1755 0/0:57,0:57:99:0,159,1890 0/0:42,1:43:81.21:0,81,1339 0/0:117,0:120:99:0,325,3945 0/0:111,0:113:99:0,307,3713 0/0:102,1:105:99:0,259,3468 0/0:67,0:67:99:0,180,2152 0/0:173,0:173:99:0,488,6339 0/0:86,0:86:99:0,244,3190 0/0:95,0:95:99:0,259,3315 0/0:100,0:100:99:0,268,3522 0/0:39,0:39:99:0,114,1387 0/0:58,0:58:99:0,159,1930 0/0:50,0:50:99:0,147,1786 0/1:29,20:49:99:564,0,796 0/0:50,0:51:99:0,141,1677 0/0:110,0:110:99:0,295,3607 0/1:44,35:80:99:1020,0,1187 0/0:51,1:52:99:0,109,1632 0/1:24,22:46:99:623,0,728 0/0:47,0:48:99:0,129,1564 0/0:110,0:110:99:0,313,3743 0/0:42,0:42:99:0,120,1449 0/0:60,0:60:99:0,162,1937 0/0:59,0:59:99:0,162,1972 0/0:40,0:40:99:0,108,1305 0/0:39,0:40:99:0,111,1369 10 99371344 . C A 11285.49 . AC=20;AF=0.238;AN=84;BaseQRankSum=-16.626;DP=1516;Dels=0.00;FS=12.502;HRun=0;HaplotypeScore=2.6293;InbreedingCoeff=0.2124;MQ=59.12;MQ0=0;MQRankSum=1.684;QD=17.31;ReadPosRankSum=3.224 GT:AD:DP:GQ:PL 0/1:15,17:32:99:484,0,401 0/0:24,0:24:72.21:0,72,883 0/1:22,16:38:99:433,0,639 0/1:34,37:71:99:1010,0,1078 0/1:25,36:61:99:1044,0,740 0/0:46,0:47:99:0,138,1750 0/0:40,0:40:99:0,114,1466 0/0:47,0:47:99:0,135,1704 0/0:30,0:30:72.23:0,72,936 0/0:43,0:43:99:0,120,1456 0/0:19,1:20:24.90:0,25,637 0/0:17,0:17:42.12:0,42,505 0/0:26,2:28:47.73:0,48,861 0/1:22,12:34:99:296,0,632 1/1:12,81:94:99:2370,150,0 0/1:14,19:33:99:522,0,333 1/1:0,24:25:72.18:805,72,0 0/0:33,0:33:87.24:0,87,1041 0/0:36,1:37:90.21:0,90,1027 0/0:36,0:36:96.30:0,96,1204 0/0:31,0:31:87.27:0,87,1078 0/1:13,22:35:99:634,0,329 0/1:30,44:74:99:1247,0,877 0/0:46,1:47:99:0,100,1675 0/0:48,0:48:99:0,132,1733 0/0:41,0:41:99:0,120,1585 1/1:0,16:19:45.13:520,45,0 0/1:21,9:30:99:218,0,594 1/1:0,28:28:72.21:833,72,0 0/0:21,0:21:60.16:0,60,733 0/0:23,0:23:69.21:0,69,869 0/0:40,0:40:99:0,99,1259 0/0:23,0:23:69.17:0,69,841 0/0:30,0:30:81.25:0,81,996 0/0:28,0:28:81.24:0,81,1006 0/1:15,11:26:99:274,0,464 0/0:32,0:32:93.25:0,93,1111 0/0:31,0:31:90.25:0,90,1093 0/0:40,0:40:99:0,105,1333 0/1:13,10:23:99:287,0,421 0/1:17,11:29:99:308,0,472 0/0:27,0:27:81.23:0,81,982 10 99376092 . T C 14768.33 . AC=26;AF=0.310;AN=84;BaseQRankSum=17.478;DP=1534;Dels=0.00;FS=2.139;HRun=1;HaplotypeScore=0.7599;InbreedingCoeff=0.1088;MQ=58.98;MQ0=0;MQRankSum=0.564;QD=19.69;ReadPosRankSum=-0.468 GT:AD:DP:GQ:PL 0/1:16,18:34:99:481,0,468 1/1:0,23:23:66.21:834,66,0 0/1:11,18:29:99:603,0,274 0/0:66,0:66:99:0,193,2283 0/0:64,1:65:99:0,190,2268 0/1:22,26:48:99:799,0,659 0/0:42,0:42:99:0,120,1462 1/1:0,31:31:87.27:1123,87,0 0/1:18,21:39:99:546,0,514 1/1:0,17:17:48.15:604,48,0 0/0:22,1:23:63.19:0,63,745 0/1:12,16:28:99:484,0,324 0/0:20,0:20:57.17:0,57,683 0/1:10,17:27:99:579,0,251 0/0:93,0:93:99:0,247,2924 0/0:33,0:33:99:0,99,1164 0/0:26,0:26:78.22:0,78,901 0/1:7,20:27:99:670,0,168 0/1:23,20:43:99:481,0,696 1/1:0,41:41:99:1428,117,0 0/1:25,28:53:99:792,0,668 0/0:33,0:33:93.28:0,93,1125 0/1:26,33:59:99:1067,0,716 0/1:25,12:37:99:361,0,699 0/0:53,0:53:99:0,135,1652 1/1:0,38:38:99:1375,105,0 0/0:26,0:26:78.23:0,78,923 0/0:36,0:36:99:0,102,1195 0/0:24,0:24:69.19:0,69,810 0/0:34,0:34:96.28:0,96,1120 0/1:17,13:30:99:406,0,504 0/1:21,31:52:99:876,0,560 0/0:33,0:33:96.29:0,96,1137 0/0:29,0:29:87.26:0,87,1030 0/0:35,1:36:70.06:0,70,1178 0/0:26,0:26:72.20:0,72,849 0/1:23,24:47:99:732,0,622 0/0:24,0:24:72.21:0,72,850 0/1:13,6:19:99:154,0,384 0/0:26,0:26:78.21:0,78,924 0/1:14,14:28:99:373,0,416 0/0:36,0:36:99:0,105,1249 10 99376152 . A G 16052.65 . AC=26;AF=0.310;AN=84;BaseQRankSum=-5.246;DP=1850;Dels=0.00;FS=10.513;HRun=3;HaplotypeScore=0.7121;InbreedingCoeff=0.1088;MQ=59.45;MQ0=0;MQRankSum=-0.614;QD=18.18;ReadPosRankSum=1.323 GT:AD:DP:GQ:PL 0/1:19,21:40:99:543,0,514 1/1:0,39:39:99:1321,108,0 0/1:14,18:32:99:517,0,307 0/0:67,0:67:99:0,172,2235 0/0:60,0:60:99:0,166,2113 0/1:23,36:59:99:1094,0,677 0/0:54,0:54:99:0,144,1886 1/1:0,43:43:99:1481,114,0 0/1:15,15:30:99:393,0,428 1/1:0,26:26:69.20:819,69,0 0/0:36,0:36:99:0,99,1242 0/1:9,14:23:99:393,0,269 0/0:26,0:26:66.21:0,66,844 0/1:12,13:25:99:366,0,345 0/0:144,0:144:99:0,358,4569 0/0:32,1:33:58.73:0,59,1058 0/0:45,0:45:99:0,117,1489 0/1:17,22:39:99:605,0,482 0/1:38,25:63:99:619,0,1192 1/1:0,55:55:99:1765,147,0 0/1:25,28:53:99:727,0,717 0/0:39,0:39:99:0,99,1251 0/1:40,35:76:99:1016,0,1081 0/1:25,22:47:99:641,0,666 0/0:47,0:47:99:0,126,1664 1/1:0,36:36:96.30:1245,96,0 0/0:37,0:37:99:0,105,1324 0/0:38,0:38:99:0,99,1263 0/0:36,0:36:93.30:0,93,1193 0/0:35,0:35:90.28:0,90,1138 0/1:17,10:27:99:266,0,478 0/1:21,29:50:99:801,0,603 0/0:32,0:32:84.26:0,84,1069 0/0:46,0:47:99:0,126,1593 0/0:43,0:43:99:0,108,1394 0/0:39,0:39:99:0,105,1325 0/1:18,27:45:99:699,0,519 0/0:29,0:29:81.20:0,81,976 0/1:25,14:39:99:363,0,745 0/0:40,0:40:99:0,99,1290 0/1:21,15:36:99:375,0,639 0/0:40,0:40:99:0,111,1397 10 99509251 . G T 3705.68 . AC=3;AF=0.036;AN=84;BaseQRankSum=-11.091;DP=3105;Dels=0.00;FS=0.511;HRun=0;HaplotypeScore=1.6256;InbreedingCoeff=-0.0370;MQ=59.31;MQ0=0;MQRankSum=-0.341;QD=13.93;ReadPosRankSum=-0.992 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,132,1649 0/0:64,0:64:99:0,172,2154 0/1:28,19:47:99:489,0,847 0/0:175,0:176:99:0,478,6232 0/0:170,0:173:99:0,469,6113 0/0:136,0:137:99:0,382,4935 0/0:118,0:118:99:0,325,4335 0/0:103,0:103:99:0,289,3757 0/0:47,0:47:99:0,138,1690 0/0:48,0:48:99:0,126,1584 0/0:61,0:61:99:0,166,2066 0/0:54,0:54:99:0,144,1730 0/0:41,0:41:99:0,117,1422 0/0:41,0:41:99:0,120,1503 0/1:86,89:175:99:2499,0,2520 0/1:20,24:44:99:718,0,594 0/0:53,0:53:99:0,150,1890 0/0:47,0:47:99:0,135,1659 0/0:81,0:82:99:0,238,2822 0/0:72,0:72:99:0,205,2563 0/0:75,0:75:99:0,205,2505 0/0:45,0:45:99:0,126,1545 0/0:184,0:185:99:0,509,6723 0/0:115,0:116:99:0,316,4172 0/0:125,1:126:99:0,324,4615 0/0:110,0:111:99:0,301,3974 0/0:29,0:29:75.19:0,75,902 0/0:48,0:48:99:0,126,1580 0/0:40,0:40:99:0,105,1278 0/0:53,0:54:99:0,147,1855 0/0:52,0:52:99:0,156,1967 0/0:68,0:68:99:0,184,2294 0/0:58,0:58:99:0,150,1889 0/0:45,0:45:99:0,129,1587 0/0:46,0:46:99:0,132,1637 0/0:59,0:59:99:0,171,2097 0/0:72,0:73:99:0,193,2360 0/0:47,0:48:99:0,129,1580 0/0:47,0:47:99:0,135,1671 0/0:58,0:58:99:0,159,1960 0/0:39,0:39:99:0,105,1306 0/0:46,0:46:99:0,132,1662 10 99664456 . T C 5118.29 . AC=4;AF=0.048;AN=84;BaseQRankSum=12.231;DP=4234;Dels=0.00;FS=8.399;HRun=0;HaplotypeScore=2.6124;InbreedingCoeff=-0.0500;MQ=57.87;MQ0=0;MQRankSum=5.833;QD=14.71;ReadPosRankSum=-1.494 GT:AD:DP:GQ:PL 0/1:43,48:91:99:1453,0,1204 0/0:75,0:75:99:0,205,2482 0/0:68,0:68:99:0,184,2197 0/0:236,0:236:99:0,644,7951 0/0:216,0:216:99:0,587,7339 0/0:127,0:127:99:0,349,4469 0/0:121,0:121:99:0,310,3912 0/0:125,0:125:99:0,328,4102 0/0:77,0:78:99:0,208,2521 0/0:69,1:70:99:0,205,2389 0/0:72,0:72:99:0,202,2452 0/0:82,0:82:99:0,223,2708 0/0:73,0:73:99:0,199,2452 0/1:39,35:74:99:1056,0,1041 0/0:225,0:226:99:0,581,7139 0/0:77,0:77:99:0,214,2591 0/0:64,0:64:99:0,178,2126 0/0:67,0:67:99:0,190,2270 0/0:115,0:115:99:0,313,3786 0/0:132,0:132:99:0,364,4468 0/0:88,0:88:99:0,244,2973 0/0:99,0:99:99:0,265,3187 0/0:233,0:233:99:0,614,7718 0/0:116,0:116:99:0,310,3901 0/0:138,0:138:99:0,382,4782 0/1:61,49:110:99:1300,0,1817 0/0:60,0:60:99:0,169,2039 0/0:80,0:80:99:0,220,2686 0/0:60,0:61:99:0,172,2106 0/0:70,0:70:99:0,190,2314 0/1:30,43:73:99:1309,0,706 0/0:121,0:121:99:0,325,4020 0/0:98,0:98:99:0,262,3235 0/0:66,0:66:99:0,193,2329 0/0:74,1:75:99:0,176,2498 0/0:71,0:71:99:0,199,2425 0/0:137,0:137:99:0,373,4566 0/0:74,0:74:99:0,205,2472 0/0:73,0:73:99:0,202,2455 0/0:71,0:71:99:0,187,2315 0/0:54,0:54:99:0,150,1780 0/0:77,0:77:99:0,223,2693 10 99991408 . A G 119023.78 . AC=84;AF=1.000;AN=84;BaseQRankSum=-1.178;DP=3687;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8420;InbreedingCoeff=-0.0000;MQ=59.53;MQ0=0;MQRankSum=1.161;QD=32.28;ReadPosRankSum=0.291 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2294,193,0 1/1:0,92:92:99:2961,253,0 1/1:0,71:71:99:2406,205,0 1/1:0,138:138:99:4554,355,0 1/1:0,115:115:99:3999,310,0 1/1:0,122:122:99:4278,331,0 1/1:0,114:114:99:3889,301,0 1/1:0,107:107:99:3518,280,0 1/1:0,87:87:99:2783,235,0 1/1:0,47:47:99:1463,123,0 1/1:0,76:76:99:2483,214,0 1/1:0,78:78:99:2505,214,0 1/1:0,68:68:99:2116,178,0 1/1:0,62:62:99:1961,165,0 1/1:0,250:250:99:7559,629,0 1/1:0,53:53:99:1661,138,0 1/1:1,74:75:99:2350,170,0 1/1:0,72:72:99:2260,199,0 1/1:0,90:90:99:2915,247,0 1/1:0,101:101:99:2958,244,0 1/1:0,93:93:99:2961,247,0 1/1:0,68:68:99:2270,193,0 1/1:0,150:150:99:5020,382,0 1/1:0,102:102:99:3493,274,0 1/1:1,136:138:99:4533,325,0 1/1:0,99:99:99:3341,259,0 1/1:0,47:47:99:1454,123,0 1/1:0,76:76:99:2455,208,0 1/1:0,56:56:99:1772,153,0 1/1:0,76:76:99:2404,205,0 1/1:0,63:63:99:2065,180,0 1/1:0,94:94:99:2958,247,0 1/1:0,69:70:99:2208,187,0 1/1:0,72:72:99:2319,202,0 1/1:0,71:71:99:2235,187,0 1/1:0,71:71:99:2367,205,0 1/1:0,97:97:99:2998,253,0 1/1:0,68:68:99:2136,184,0 1/1:0,76:76:99:2469,211,0 1/1:0,80:80:99:2506,211,0 1/1:0,64:64:99:2034,171,0 1/1:0,66:66:99:2113,181,0 10 100020694 . T G 130.33 . AC=13;AF=0.155;AN=84;BaseQRankSum=-7.433;DP=540;Dels=0.00;FS=45.490;HRun=1;HaplotypeScore=0.4715;InbreedingCoeff=-0.2291;MQ=57.71;MQ0=0;MQRankSum=-0.291;QD=0.70;ReadPosRankSum=-1.792 GT:AD:DP:GQ:PL 0/0:4,5:9:12.03:0,12,137 0/1:6,5:11:16.51:17,0,119 0/1:3,9:12:13.67:14,0,64 0/0:13,15:28:27.08:0,27,307 0/1:8,12:20:4.47:4,0,255 0/1:6,11:17:50.02:50,0,139 0/0:1,8:9:3.01:0,3,34 0/1:4,3:7:14.59:15,0,115 0/0:2,2:4:6.02:0,6,71 0/0:3,3:6:6:0,6,51 0/1:4,3:7:17.46:17,0,127 0/0:4,2:6:9.03:0,9,106 0/0:5,4:9:15.03:0,15,160 0/0:2,10:12:6:0,6,56 0/1:20,15:35:6.06:6,0,504 0/0:12,6:18:0.41:0,0,252 0/1:4,5:9:19.63:20,0,55 0/0:5,2:7:12.04:0,12,148 0/1:9,5:14:30.86:31,0,252 0/0:13,9:22:21.04:0,21,224 0/1:12,5:17:23.78:24,0,381 0/0:11,4:15:30.08:0,30,340 0/0:10,13:23:21.04:0,21,235 0/0:9,2:11:15.02:0,15,158 0/0:9,7:16:15.04:0,15,178 0/0:2,1:3:3.01:0,3,32 0/0:6,3:9:9:0,9,90 0/0:7,7:14:21.03:0,21,222 0/1:3,9:12:26.24:26,0,48 0/0:4,3:7:9.01:0,9,89 0/0:8,4:12:21.06:0,21,248 0/0:15,8:23:11.44:0,11,393 0/0:13,12:25:30.07:0,30,336 0/0:9,3:12:24.05:0,24,274 0/0:3,2:5:9.03:0,9,104 0/1:6,6:12:31.22:31,0,150 0/0:10,3:13:0.33:0,0,196 0/0:4,6:10:12.03:0,12,133 0/0:8,6:14:12.02:0,12,120 0/0:3,2:5:6.01:0,6,66 0/0:6,2:8:15.03:0,15,163 0/1:7,5:12:10.50:11,0,174 10 100020880 . C T 1679.93 . AC=7;AF=0.083;AN=84;BaseQRankSum=5.334;DP=1188;Dels=0.00;FS=1.878;HRun=0;HaplotypeScore=2.3126;InbreedingCoeff=-0.0910;MQ=58.13;MQ0=0;MQRankSum=-0.055;QD=10.57;ReadPosRankSum=1.308 GT:AD:DP:GQ:PL 0/0:19,0:19:51.12:0,51,572 0/0:21,0:21:57.13:0,57,641 0/1:7,8:15:99:187,0,191 0/0:93,0:93:99:0,238,2867 0/0:63,0:63:99:0,162,1955 0/0:42,0:42:99:0,117,1386 0/0:39,0:39:99:0,102,1231 0/0:44,0:44:99:0,114,1337 0/0:18,0:18:51.13:0,51,565 0/0:15,0:15:39.11:0,39,437 0/1:6,7:13:99:209,0,151 0/0:15,0:15:42.11:0,42,475 0/0:12,0:12:30.07:0,30,321 0/0:23,0:23:60.15:0,60,656 0/0:44,0:44:99:0,111,1229 0/0:26,0:26:75.17:0,75,845 0/0:17,0:17:51.13:0,51,559 0/0:18,0:18:45.12:0,45,511 0/0:26,0:26:69.18:0,69,768 0/0:44,0:44:99:0,117,1323 0/0:33,0:33:90.20:0,90,1003 0/0:25,0:25:66.17:0,66,762 0/0:69,0:69:99:0,193,2329 0/0:31,0:31:78.22:0,78,925 0/0:44,0:44:99:0,111,1355 0/0:32,0:32:84.24:0,84,1000 0/0:10,0:10:30.07:0,30,323 0/0:17,0:17:48.11:0,48,522 0/0:17,0:17:42.10:0,42,476 0/0:20,0:20:48.10:0,48,546 0/0:22,0:22:60.15:0,60,685 0/1:24,25:49:99:629,0,563 0/0:32,0:32:81.21:0,81,923 0/0:10,0:10:30.08:0,30,324 0/0:26,0:27:66.18:0,66,751 0/0:25,0:25:72.18:0,72,792 0/1:12,8:20:99:208,0,292 0/1:9,6:15:99:162,0,234 0/0:21,0:21:57.13:0,57,628 0/1:17,11:28:99:269,0,478 0/0:15,0:15:42.08:0,42,456 0/1:14,5:19:99:129,0,307 10 100183515 . G C 331.40 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.990;DP=2339;Dels=0.00;FS=10.610;HRun=0;HaplotypeScore=1.4211;InbreedingCoeff=-0.0120;MQ=58.45;MQ0=0;MQRankSum=0.971;QD=9.21;ReadPosRankSum=1.471 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,117,1462 0/0:37,0:37:99:0,102,1276 0/1:22,14:36:99:378,0,741 0/0:125,0:125:99:0,346,4599 0/0:127,0:127:99:0,361,4836 0/0:76,0:76:99:0,208,2788 0/0:76,0:76:99:0,208,2773 0/0:73,1:74:99:0,205,2731 0/0:34,0:34:93.30:0,93,1184 0/0:35,0:35:99:0,99,1252 0/0:37,0:37:99:0,105,1316 0/0:38,0:38:99:0,108,1364 0/0:29,0:29:84.26:0,84,1047 0/0:52,0:52:99:0,147,1822 0/0:131,0:131:99:0,352,4413 0/0:49,0:49:99:0,144,1777 0/0:29,0:29:81.26:0,81,1027 0/0:38,0:38:99:0,108,1346 0/0:65,0:67:99:0,178,2233 0/0:94,0:94:99:0,271,3391 0/0:75,0:75:99:0,217,2712 0/0:53,0:53:99:0,147,1851 0/0:119,0:119:99:0,328,4438 0/0:70,0:70:99:0,196,2609 0/0:76,0:76:99:0,202,2695 0/0:68,0:68:99:0,184,2440 0/0:34,0:34:99:0,102,1242 0/0:31,0:31:93.29:0,93,1159 0/0:29,0:29:81.25:0,81,1017 0/0:35,0:35:99:0,102,1281 0/0:29,0:29:87.28:0,87,1101 0/0:59,0:59:99:0,159,2004 0/0:51,0:51:99:0,144,1791 0/0:28,0:28:81.26:0,81,1025 0/0:40,0:40:99:0,108,1363 0/0:38,0:38:99:0,99,1263 0/0:68,0:69:99:0,190,2395 0/0:45,0:45:99:0,132,1666 0/0:48,0:48:99:0,141,1779 0/0:36,0:37:99:0,108,1327 0/0:40,0:40:99:0,117,1471 0/0:41,0:41:99:0,117,1482 10 100183570 . G C 1547.94 . AC=3;AF=0.036;AN=84;BaseQRankSum=-3.184;DP=1388;Dels=0.00;FS=5.620;HRun=0;HaplotypeScore=1.0981;InbreedingCoeff=-0.0370;MQ=58.51;MQ0=0;MQRankSum=1.580;QD=13.34;ReadPosRankSum=0.378 GT:AD:DP:GQ:PL 0/0:15,0:15:45.14:0,45,564 0/0:21,0:21:60.18:0,60,733 0/0:24,0:24:66.19:0,66,804 0/0:65,0:65:99:0,184,2353 0/0:74,0:74:99:0,217,2803 0/0:54,0:54:99:0,147,1940 0/0:32,0:32:84.23:0,84,1077 0/0:32,0:32:87.28:0,87,1138 0/0:22,0:22:63.19:0,63,785 0/0:25,0:25:72.22:0,72,896 0/0:28,0:28:81.23:0,81,967 0/1:10,14:24:99:411,0,285 0/0:21,0:21:60.19:0,60,760 0/1:11,15:26:99:370,0,274 0/0:75,0:76:99:0,211,2570 0/0:41,0:41:99:0,117,1435 0/0:21,0:21:63.15:0,63,758 0/0:19,0:19:57.17:0,57,699 0/0:40,0:41:99:0,108,1316 0/0:43,0:43:99:0,111,1415 0/0:40,0:40:99:0,99,1204 0/0:26,0:26:78.24:0,78,961 0/1:37,29:66:99:843,0,1122 0/0:30,0:30:90.27:0,90,1125 0/0:45,0:45:99:0,129,1654 0/0:36,0:36:99:0,102,1344 0/0:21,0:21:60.18:0,60,718 0/0:22,0:22:66.21:0,66,832 0/0:20,0:20:60.19:0,60,758 0/0:21,0:21:60.17:0,60,748 0/0:28,0:28:81.25:0,81,1025 0/0:55,0:55:99:0,138,1751 0/0:34,0:34:99:0,99,1198 0/0:20,0:20:60.19:0,60,764 0/0:26,0:26:78.24:0,78,967 0/0:30,0:31:90.29:0,90,1147 0/0:42,0:42:99:0,102,1261 0/0:20,0:20:51.16:0,51,625 0/0:27,0:27:75.24:0,75,941 0/0:23,0:23:69.21:0,69,850 0/0:22,0:22:57.16:0,57,703 0/0:29,0:29:81.24:0,81,1001 10 100189568 . C A 6190.44 . AC=8;AF=0.095;AN=84;BaseQRankSum=-17.502;DP=4867;DS;Dels=0.00;FS=8.230;HRun=1;HaplotypeScore=3.7714;InbreedingCoeff=0.1711;MQ=59.37;MQ0=0;MQRankSum=0.947;QD=14.46;ReadPosRankSum=-2.853 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,166,2113 0/0:50,0:50:99:0,129,1637 0/0:60,0:60:99:0,141,1803 0/0:247,1:248:99:0,632,8468 0/0:246,0:246:99:0,620,8471 0/0:245,0:245:99:0,566,7667 0/0:210,0:210:99:0,500,6817 0/0:218,0:218:99:0,524,7141 0/1:31,39:70:99:1021,0,878 0/1:31,25:56:99:668,0,877 0/0:54,0:54:99:0,135,1741 0/0:63,0:64:99:0,165,2066 0/1:36,38:74:99:1025,0,1051 0/0:78,0:78:99:0,196,2504 0/0:217,0:218:99:0,530,6804 0/0:80,0:80:99:0,211,2678 0/0:66,0:66:99:0,175,2198 0/0:63,0:63:99:0,159,2050 0/0:148,1:149:99:0,385,4952 0/0:194,0:195:99:0,466,6036 0/0:197,1:198:99:0,432,5918 0/0:102,0:102:99:0,250,3244 0/0:243,0:243:99:0,587,7996 0/0:169,0:169:99:0,388,5293 0/0:220,0:221:99:0,518,7126 0/0:200,0:200:99:0,451,6171 0/1:39,22:61:99:560,0,1101 0/0:59,0:59:99:0,150,1895 0/1:28,20:48:99:551,0,789 0/1:34,24:58:99:531,0,959 1/1:1,60:61:99:1834,138,0 0/0:197,0:197:99:0,472,6164 0/0:104,0:104:99:0,259,3299 0/0:68,0:68:99:0,178,2229 0/0:84,0:84:99:0,208,2681 0/0:67,0:67:99:0,162,2081 0/0:111,0:111:99:0,268,3407 0/0:62,0:62:99:0,165,2070 0/0:60,0:60:99:0,156,1990 0/0:71,0:71:99:0,178,2247 0/0:57,0:59:99:0,135,1734 0/0:56,0:56:99:0,147,1868 10 100189628 . G A 1229.67 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.285;DP=2604;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.2104;InbreedingCoeff=-0.0244;MQ=59.43;MQ0=0;MQRankSum=1.454;QD=15.97;ReadPosRankSum=-0.013 GT:AD:DP:GQ:PL 0/0:35,0:36:87.27:0,87,1097 0/0:26,0:26:75.23:0,75,939 0/0:43,0:43:99:0,117,1394 0/0:161,0:162:99:0,469,6139 0/0:139,0:141:99:0,406,5353 0/0:131,0:132:99:0,376,4855 0/0:111,0:111:99:0,313,4135 0/0:119,0:119:99:0,337,4334 0/0:37,0:37:99:0,105,1332 0/0:37,0:37:93.27:0,93,1136 0/0:23,0:23:63.17:0,63,754 0/1:21,15:36:99:443,0,653 0/0:42,0:43:99:0,126,1556 0/1:11,29:41:99:849,0,241 0/0:98,1:100:99:0,251,3305 0/0:38,0:38:99:0,102,1250 0/0:47,0:48:99:0,135,1619 0/0:39,0:40:99:0,114,1390 0/0:62,0:65:99:0,168,2026 0/0:94,0:95:99:0,268,3308 0/0:67,0:68:99:0,181,2239 0/0:57,0:58:99:0,159,1942 0/0:168,0:169:99:0,491,6446 0/0:83,1:84:99:0,211,3051 0/0:118,1:120:99:0,313,4396 0/0:100,0:100:99:0,277,3548 0/0:30,0:32:81.25:0,81,1023 0/0:42,0:42:99:0,111,1361 0/0:34,0:35:87.24:0,87,1060 0/0:28,0:29:78.24:0,78,960 0/0:32,0:32:93.29:0,93,1171 0/0:87,0:88:99:0,244,3008 0/0:51,0:51:99:0,141,1682 0/0:31,0:31:84.25:0,84,1039 0/0:40,0:40:99:0,114,1429 0/0:33,0:33:96.27:0,96,1146 0/0:62,0:62:99:0,172,2117 0/0:36,0:37:96.28:0,96,1187 0/0:34,0:34:99:0,99,1224 0/0:29,0:29:75.23:0,75,915 0/0:24,0:24:63.16:0,63,733 0/0:33,0:33:87.28:0,87,1108 10 100219374 . T A 34307.93 . AC=37;AF=0.440;AN=84;BaseQRankSum=26.059;DP=2734;Dels=0.00;FS=1.084;HRun=4;HaplotypeScore=1.1208;InbreedingCoeff=0.0822;MQ=58.62;MQ0=0;MQRankSum=0.882;QD=19.44;ReadPosRankSum=-0.556 GT:AD:DP:GQ:PL 1/1:0,57:57:99:2015,166,0 0/1:21,23:44:99:667,0,600 0/1:26,28:55:99:861,0,673 0/0:129,1:130:99:0,345,4367 0/1:52,50:102:99:1520,0,1529 0/1:45,31:76:99:851,0,1358 0/1:44,21:65:99:594,0,1324 0/1:30,29:59:99:878,0,867 0/0:72,0:72:99:0,208,2394 0/0:50,0:50:99:0,147,1669 0/1:27,20:47:99:549,0,778 0/0:52,0:52:99:0,153,1785 0/0:55,1:56:99:0,156,1810 0/1:22,29:51:99:901,0,598 0/1:98,81:179:99:2322,0,2700 0/1:23,26:49:99:792,0,644 0/0:52,0:54:99:0,153,1780 0/1:22,26:48:99:804,0,595 0/0:100,0:101:99:0,295,3495 0/1:45,54:99:99:1645,0,1278 0/0:100,1:101:99:0,289,3369 0/1:36,24:60:99:627,0,1002 0/1:46,47:93:99:1454,0,1299 1/1:0,51:51:99:1786,144,0 1/1:0,67:67:99:2394,193,0 1/1:0,40:40:99:1442,120,0 0/0:45,0:45:99:0,135,1533 0/0:56,0:56:99:0,168,1949 0/0:69,0:70:99:0,202,2318 0/0:64,0:64:99:0,190,2188 0/0:62,0:62:99:0,178,2076 0/1:34,32:66:99:971,0,994 0/0:56,0:56:99:0,165,1888 1/1:0,41:41:99:1459,120,0 1/1:1,39:40:83.91:1341,84,0 0/1:28,33:61:99:967,0,760 1/1:0,73:73:99:2533,208,0 1/1:1,42:43:84.23:1375,84,0 0/1:30,24:54:99:700,0,866 1/1:0,51:51:99:1816,150,0 0/1:27,19:46:99:548,0,764 0/1:29,18:47:99:495,0,814 10 100219492 . C G 868.43 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.096;DP=861;Dels=0.00;FS=6.897;HRun=0;HaplotypeScore=0.5478;InbreedingCoeff=-0.0245;MQ=57.65;MQ0=0;MQRankSum=1.827;QD=16.08;ReadPosRankSum=1.198 GT:AD:DP:GQ:PL 0/0:15,0:16:42.13:0,42,541 0/0:10,0:10:30.09:0,30,370 0/0:26,0:26:78.24:0,78,981 0/1:11,13:24:99:428,0,361 0/0:18,0:18:51.17:0,51,709 0/0:15,0:16:42.13:0,42,548 0/0:19,0:19:54.18:0,54,725 0/0:15,0:15:45.15:0,45,597 0/0:26,0:26:75.23:0,75,944 0/0:16,0:16:48.15:0,48,594 0/0:8,0:8:24.08:0,24,304 0/0:15,0:15:42.13:0,42,521 0/0:24,0:24:69.19:0,69,863 0/0:16,0:16:45.14:0,45,563 0/0:62,0:62:99:0,175,2184 0/0:18,0:18:51.16:0,51,642 0/0:17,0:17:48.15:0,48,621 0/0:17,0:17:45.11:0,45,541 0/0:35,0:35:93.29:0,93,1160 0/0:26,0:26:72.23:0,72,926 0/0:31,0:31:90.27:0,90,1091 0/0:27,0:27:78.24:0,78,971 0/1:15,15:30:99:503,0,481 0/0:10,0:10:27.09:0,27,370 0/0:21,0:21:63.20:0,63,843 0/0:17,0:17:48.15:0,48,631 0/0:17,0:17:48.14:0,48,585 0/0:15,0:15:45.14:0,45,560 0/0:22,0:22:63.20:0,63,788 0/0:17,0:17:48.15:0,48,590 0/0:20,0:20:60.19:0,60,759 0/0:27,0:27:69.22:0,69,870 0/0:16,0:16:48.15:0,48,599 0/0:18,0:18:51.16:0,51,644 0/0:22,0:22:60.19:0,60,780 0/0:23,0:23:66.21:0,66,831 0/0:19,0:19:48.14:0,48,611 0/0:13,0:13:39.12:0,39,488 0/0:25,0:25:72.22:0,72,890 0/0:15,0:15:42.13:0,42,531 0/0:13,0:13:36.11:0,36,446 0/0:19,0:19:57.18:0,57,725 10 101117360 . T C 500.28 . AC=1;AF=0.012;AN=84;BaseQRankSum=6.343;DP=1653;Dels=0.00;FS=2.957;HRun=0;HaplotypeScore=0.5456;InbreedingCoeff=-0.0120;MQ=59.54;MQ0=0;MQRankSum=0.491;QD=15.63;ReadPosRankSum=-1.040 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,99,1202 0/0:34,0:34:93.27:0,93,1102 0/0:29,0:29:75.20:0,75,888 0/0:39,0:39:99:0,111,1327 0/0:48,0:48:99:0,141,1667 0/0:48,0:48:99:0,138,1719 0/0:26,0:26:75.23:0,75,913 0/0:29,0:29:81.25:0,81,981 0/0:29,0:29:81.24:0,81,959 0/0:27,0:27:78.22:0,78,901 0/0:25,0:25:75.21:0,75,860 0/0:31,0:31:93.28:0,93,1106 0/0:26,0:26:66.20:0,66,807 0/0:21,0:21:63.19:0,63,754 0/0:120,0:120:99:0,325,3851 0/0:30,0:30:84.25:0,84,992 0/0:38,0:38:99:0,108,1274 0/0:20,0:20:60.18:0,60,700 0/0:77,0:77:99:0,214,2538 0/0:67,0:67:99:0,193,2272 0/0:72,0:72:99:0,199,2360 0/0:35,0:35:99:0,99,1175 0/0:62,0:62:99:0,178,2118 0/0:31,0:31:93.28:0,93,1112 0/0:30,0:30:87.26:0,87,1045 0/0:46,0:46:99:0,123,1494 0/0:24,0:24:66.19:0,66,782 0/0:35,0:36:99:0,105,1210 0/1:13,19:32:99:546,0,315 0/0:36,0:36:99:0,99,1152 0/0:32,0:32:93.28:0,93,1115 0/0:65,0:65:99:0,175,2073 0/0:42,0:42:99:0,120,1407 0/0:30,0:30:87.25:0,87,1012 0/0:27,0:27:81.24:0,81,949 0/0:35,0:35:99:0,105,1243 0/0:62,0:62:99:0,165,1985 0/0:24,0:24:69.21:0,69,815 0/0:35,0:35:93.26:0,93,1109 0/0:31,0:31:93.27:0,93,1092 0/0:37,0:37:99:0,105,1230 0/0:27,0:27:81.24:0,81,966 10 101147692 . G A 4303.97 . AC=8;AF=0.095;AN=84;BaseQRankSum=4.267;DP=1388;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.1610;InbreedingCoeff=-0.1053;MQ=58.99;MQ0=0;MQRankSum=0.669;QD=15.26;ReadPosRankSum=0.036 GT:AD:DP:GQ:PL 0/0:27,0:27:75.21:0,75,885 0/0:27,0:27:81.19:0,81,899 0/0:20,0:20:48.14:0,48,566 0/0:60,0:60:99:0,165,2028 0/0:49,0:49:99:0,138,1555 0/0:36,0:36:99:0,102,1213 0/0:54,0:54:99:0,138,1717 0/0:37,0:37:99:0,108,1305 0/0:14,0:14:42.11:0,42,490 0/0:24,0:24:69.17:0,69,798 0/0:37,0:37:99:0,108,1262 0/0:19,0:19:57.16:0,57,669 0/0:20,0:20:60.13:0,60,656 0/1:12,15:27:99:444,0,293 0/0:64,0:65:99:0,159,1885 0/0:31,0:31:93.25:0,93,1075 0/0:27,0:27:75.18:0,75,863 0/0:22,0:22:57.16:0,57,675 0/1:21,24:45:99:740,0,517 0/1:32,31:64:99:958,0,760 0/0:43,0:44:99:0,120,1420 0/0:44,0:44:99:0,123,1398 0/0:53,0:54:99:0,144,1708 0/0:38,1:39:62.97:0,63,1179 0/0:42,0:42:99:0,111,1382 0/0:37,0:37:99:0,99,1208 0/0:22,0:22:63.18:0,63,733 0/0:18,0:18:48.11:0,48,528 0/0:19,0:19:54.13:0,54,608 0/0:16,0:16:45.12:0,45,511 0/0:19,0:19:54.16:0,54,635 0/0:47,0:47:99:0,129,1526 0/0:47,0:47:99:0,126,1506 0/0:21,0:21:60.17:0,60,695 0/0:21,0:21:63.16:0,63,711 0/1:12,15:27:99:397,0,328 0/1:22,17:39:99:496,0,579 0/1:13,13:26:99:369,0,358 0/0:26,0:26:78.20:0,78,875 0/1:11,18:29:99:531,0,205 0/0:20,0:20:57.12:0,57,649 0/1:11,14:25:99:370,0,304 10 101147720 . C T 880.37 . AC=3;AF=0.036;AN=84;BaseQRankSum=-4.743;DP=1452;Dels=0.00;FS=21.316;HRun=0;HaplotypeScore=1.9978;InbreedingCoeff=-0.0377;MQ=58.95;MQ0=0;MQRankSum=0.978;QD=6.62;ReadPosRankSum=1.410 GT:AD:DP:GQ:PL 0/0:27,0:27:69.21:0,69,832 0/0:28,0:28:72.20:0,72,862 0/0:17,1:18:12.89:0,13,506 0/0:70,0:70:99:0,175,2229 0/0:50,0:50:99:0,126,1592 0/0:36,0:36:99:0,99,1244 0/0:58,0:58:99:0,141,1871 0/0:48,0:48:99:0,129,1662 0/0:14,0:14:36.10:0,36,421 0/1:16,9:25:99:217,0,387 0/0:38,0:38:96.28:0,96,1189 0/0:21,0:21:54.17:0,54,655 0/0:20,1:21:25.58:0,26,567 0/0:22,0:22:57.16:0,57,669 0/1:48,24:72:99:435,0,1067 0/1:24,12:36:99:304,0,564 0/0:22,0:22:57.15:0,57,675 0/0:27,0:27:63.15:0,63,738 0/0:47,0:47:99:0,129,1514 0/0:57,0:58:99:0,144,1773 0/0:46,0:46:99:0,111,1360 0/0:40,0:40:99:0,111,1354 0/0:61,0:61:99:0,166,2134 0/0:34,0:34:84.26:0,84,1097 0/0:45,0:46:99:0,114,1504 0/0:39,0:40:99:0,105,1357 0/0:25,0:25:63.16:0,63,751 0/0:23,0:23:57.14:0,57,664 0/0:19,0:19:51.15:0,51,592 0/0:17,0:17:51.15:0,51,618 0/0:27,0:27:75.22:0,75,902 0/0:53,0:53:99:0,132,1670 0/0:42,0:42:99:0,111,1374 0/0:25,0:25:69.21:0,69,839 0/0:22,0:22:60.18:0,60,716 0/0:28,0:28:78.23:0,78,921 0/0:40,0:40:99:0,102,1232 0/0:30,0:30:87.26:0,87,1056 0/0:27,0:27:78.21:0,78,894 0/0:27,0:27:60.18:0,60,719 0/0:16,0:16:30.09:0,30,359 0/0:26,0:26:69.19:0,69,806 10 101165952 . C T 3807.82 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.014;DP=8434;DS;Dels=0.00;FS=1.008;HRun=0;HaplotypeScore=3.1447;InbreedingCoeff=-0.0244;MQ=59.67;MQ0=0;MQRankSum=-0.885;QD=11.57;ReadPosRankSum=-1.023 GT:AD:DP:GQ:PL 0/1:95,73:168:99:1941,0,2558 0/1:92,69:161:99:1866,0,2413 0/0:173,0:173:99:0,463,5385 0/0:247,1:248:99:0,670,8570 0/0:250,0:250:99:0,698,8744 0/0:249,0:249:99:0,698,8707 0/0:225,0:225:99:0,617,7732 0/0:243,0:243:99:0,674,8335 0/0:188,0:188:99:0,517,6048 0/0:161,0:162:99:0,433,5048 0/0:151,0:151:99:0,415,4805 0/0:183,0:183:99:0,499,5779 0/0:171,0:171:99:0,448,5279 0/0:186,0:186:99:0,505,6001 0/0:249,0:249:99:0,707,7977 0/0:138,0:139:99:0,382,4428 0/0:194,0:194:99:0,532,6209 0/0:207,0:207:99:0,548,6428 0/0:242,0:244:99:0,644,7411 0/0:242,0:242:99:0,623,7411 0/0:239,0:239:99:0,647,7487 0/0:178,0:178:99:0,487,5659 0/0:250,0:250:99:0,701,8821 0/0:236,0:236:99:0,644,8073 0/0:221,0:221:99:0,620,7753 0/0:242,0:243:99:0,662,8276 0/0:132,0:132:99:0,373,4297 0/0:199,1:200:99:0,506,6179 0/0:154,0:154:99:0,421,4924 0/0:173,0:173:99:0,457,5404 0/0:140,0:140:99:0,373,4383 0/0:236,0:236:99:0,641,7600 0/0:220,0:222:99:0,557,6589 0/0:183,0:183:99:0,508,5829 0/0:195,0:195:99:0,538,6197 0/0:219,1:220:99:0,550,6730 0/0:247,0:247:99:0,656,7567 0/0:225,0:225:99:0,605,7000 0/0:157,0:157:99:0,430,5086 0/0:192,0:192:99:0,499,5881 0/0:172,0:172:99:0,451,5256 0/0:186,0:186:99:0,487,5790 10 101165971 . T C 1519.83 . AC=1;AF=0.012;AN=84;BaseQRankSum=9.199;DP=7814;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8674;InbreedingCoeff=-0.0120;MQ=59.67;MQ0=0;MQRankSum=0.179;QD=11.26;ReadPosRankSum=-2.041 GT:AD:DP:GQ:PL 0/0:157,0:157:99:0,424,5108 0/0:133,0:133:99:0,364,4334 0/0:148,0:148:99:0,406,4848 0/0:237,0:237:99:0,668,7789 0/0:250,0:250:99:0,692,8364 0/0:234,0:234:99:0,641,7868 0/0:250,0:250:99:0,692,8519 0/0:236,0:236:99:0,656,7866 0/0:163,0:163:99:0,427,5165 0/0:158,0:159:99:0,430,5106 0/0:148,0:148:99:0,406,4796 0/0:150,0:150:99:0,424,5059 0/0:144,0:144:99:0,382,4560 0/0:166,0:166:99:0,457,5461 0/0:239,0:239:99:0,659,7679 0/0:128,0:128:99:0,355,4200 0/0:173,0:173:99:0,481,5706 0/0:177,0:177:99:0,478,5769 0/0:233,0:233:99:0,641,7672 0/0:222,1:223:99:0,575,7202 0/0:238,0:238:99:0,647,7716 0/0:151,0:151:99:0,421,4960 0/0:238,1:239:99:0,657,8170 0/0:226,0:226:99:0,602,7350 0/0:249,0:249:99:0,686,8184 0/0:207,0:207:99:0,566,6799 0/0:119,0:119:99:0,328,3927 0/0:179,0:179:99:0,499,5914 0/1:81,54:135:99:1566,0,2311 0/0:154,0:154:99:0,427,5060 0/0:121,0:122:99:0,337,3997 0/0:213,0:213:99:0,563,6801 0/0:187,0:188:99:0,481,5833 0/0:164,0:164:99:0,466,5531 0/0:184,0:184:99:0,499,5965 0/0:199,0:199:99:0,539,6446 0/0:243,0:243:99:0,659,7911 0/0:190,0:190:99:0,499,6015 0/0:154,0:154:99:0,421,5054 0/0:193,0:193:99:0,527,6315 0/0:146,0:146:99:0,400,4714 0/0:172,0:172:99:0,478,5719 10 101166544 . C T 4085.81 . 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T C 13205.30 . 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A C 159.60 . 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T A 6550.99 . 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C T 64178.29 . 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A C 57.59 . AC=1;AF=0.012;AN=84;BaseQRankSum=-17.457;DP=1551;Dels=0.00;FS=35.037;HRun=1;HaplotypeScore=0.6699;InbreedingCoeff=-0.0469;MQ=59.19;MQ0=0;MQRankSum=-0.100;QD=1.23;ReadPosRankSum=-4.259 GT:AD:DP:GQ:PL 0/0:12,10:22:0.20:13,0,325 0/0:23,12:35:60.13:0,60,660 0/0:17,8:25:14.40:0,14,385 0/0:40,25:65:96.17:0,96,1021 0/0:39,24:63:39.12:0,39,980 0/0:47,14:61:99:0,111,1234 0/0:43,11:54:99:0,105,1160 0/0:37,14:51:84.14:0,84,919 0/0:19,8:27:45.10:0,45,494 0/0:30,5:35:81.17:0,81,885 0/0:26,5:31:40.45:0,40,654 0/0:29,9:38:75.19:0,75,861 0/0:13,6:19:36.09:0,36,390 0/0:16,7:23:42.10:0,42,464 0/0:55,28:83:81.34:0,81,1526 0/0:21,6:27:57.12:0,57,617 0/0:18,7:25:25.40:0,25,464 0/0:25,8:33:59.99:0,60,663 0/0:19,6:25:0.37:10,0,512 0/0:37,8:45:96.21:0,96,1095 0/1:27,20:47:99:100,0,668 0/0:22,7:29:57.12:0,57,618 0/0:45,18:63:81.56:0,82,1168 0/0:48,7:55:99:0,105,1205 0/0:42,17:59:96.17:0,96,1016 0/0:53,16:70:99:0,117,1248 0/0:7,4:11:18.03:0,18,190 0/0:20,9:29:54.12:0,54,594 0/0:20,5:25:45.06:0,45,504 0/0:16,6:22:15.45:0,15,415 0/0:15,4:19:36.08:0,36,392 0/0:29,3:32:45.28:0,45,700 0/0:26,9:35:51.13:0,51,585 0/0:19,10:29:18.42:0,18,443 0/0:22,7:29:38.43:0,38,612 0/0:21,10:31:1.78:3,0,660 0/0:24,16:40:8.20:0,8,685 0/0:26,9:35:66.18:0,66,764 0/0:23,4:27:34.43:0,34,606 0/0:23,7:30:54.15:0,54,625 0/0:16,7:23:42.09:0,42,461 0/0:16,8:24:39.10:0,39,444 10 102048208 . G T 2933 . AC=2;AF=0.024;AN=84;BaseQRankSum=-10.977;DP=6542;DS;Dels=0.00;FS=3.174;HRun=0;HaplotypeScore=2.4509;InbreedingCoeff=-0.0244;MQ=59.60;MQ0=0;MQRankSum=1.851;QD=14.03;ReadPosRankSum=-3.048 GT:AD:DP:GQ:PL 0/0:125,0:125:99:0,328,4143 0/0:166,0:166:99:0,430,5425 0/1:56,52:108:99:1414,0,1566 0/0:250,0:250:99:0,692,9214 0/0:213,0:213:99:0,590,7852 0/0:234,0:234:99:0,650,8604 0/0:189,0:189:99:0,512,6841 0/0:210,0:210:99:0,590,7796 0/0:138,0:138:99:0,379,4812 0/0:116,0:116:99:0,313,3946 0/0:114,0:114:99:0,313,3905 0/0:131,0:131:99:0,352,4471 0/0:119,0:119:99:0,310,3953 0/0:107,0:107:99:0,304,3834 0/0:246,1:248:99:0,656,8179 0/0:88,0:88:99:0,250,3095 0/0:124,1:125:99:0,303,4233 0/0:121,1:122:99:0,325,4104 0/0:214,0:214:99:0,590,7336 0/0:202,0:202:99:0,560,7114 0/0:187,1:188:99:0,472,6206 0/0:156,0:156:99:0,424,5313 0/0:250,0:250:99:0,692,9370 0/0:182,1:183:99:0,518,6867 0/0:202,1:203:99:0,529,7454 0/0:183,1:184:99:0,515,6712 0/0:110,0:110:99:0,301,3780 0/0:118,0:118:99:0,319,3993 0/0:110,1:111:99:0,295,3712 0/0:124,0:124:99:0,358,4438 0/0:117,0:117:99:0,331,4130 0/0:193,0:193:99:0,518,6593 0/0:185,1:186:99:0,497,6262 0/0:115,0:115:99:0,313,3942 0/0:110,0:110:99:0,307,3861 0/0:137,1:138:99:0,380,4710 0/0:209,0:209:99:0,569,6892 0/0:142,0:142:99:0,397,4946 0/1:45,56:101:99:1581,0,1379 0/0:143,0:143:99:0,409,5080 0/0:115,0:115:99:0,313,3909 0/0:127,0:127:99:0,352,4425 10 102050242 . C A 2944.83 . AC=4;AF=0.048;AN=84;BaseQRankSum=5.099;DP=2113;Dels=0.00;FS=5.225;HRun=0;HaplotypeScore=0.9530;InbreedingCoeff=-0.0500;MQ=59.17;MQ0=0;MQRankSum=1.429;QD=13.33;ReadPosRankSum=-1.790 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,132,1530 0/0:43,0:43:99:0,123,1365 0/1:17,19:36:99:583,0,428 0/0:77,0:77:99:0,208,2571 0/0:58,1:59:99:0,132,2077 0/0:47,0:47:99:0,132,1596 0/0:56,0:56:99:0,156,1945 0/0:52,0:52:99:0,150,1814 0/0:39,0:39:99:0,105,1240 0/0:26,0:26:75.20:0,75,850 0/0:33,0:33:96.28:0,96,1150 0/0:53,0:53:99:0,153,1719 0/0:32,0:32:93.25:0,93,1103 0/0:45,0:45:99:0,132,1488 0/0:132,0:132:99:0,349,4116 0/0:42,0:42:99:0,117,1351 0/0:43,0:43:99:0,120,1401 0/0:40,0:40:99:0,117,1319 0/0:69,1:70:99:0,193,2212 0/0:62,0:63:99:0,165,1951 0/0:87,0:88:99:0,238,2768 0/0:43,0:43:99:0,123,1362 0/0:67,0:67:99:0,187,2315 0/0:45,1:46:99:0,129,1578 0/0:50,0:50:99:0,147,1845 0/0:50,0:50:99:0,144,1783 0/0:31,0:31:93.25:0,93,1038 0/0:47,0:47:99:0,135,1560 0/0:38,0:38:99:0,111,1233 0/0:20,0:20:51.13:0,51,569 0/0:33,0:33:96.27:0,96,1117 0/0:73,0:74:99:0,202,2376 0/0:57,0:57:99:0,159,1825 0/0:58,0:58:99:0,171,1963 0/0:40,0:40:99:0,114,1288 0/0:43,0:43:99:0,117,1335 0/1:40,35:75:99:997,0,1120 0/1:37,25:62:99:682,0,955 0/1:23,25:48:99:771,0,564 0/0:39,0:39:99:0,111,1278 0/0:35,1:36:70.93:0,71,1117 0/0:32,0:32:96.25:0,96,1062 10 102054823 . G A 2022.73 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.959;DP=4623;DS;Dels=0.00;FS=0.998;HRun=0;HaplotypeScore=2.4399;InbreedingCoeff=-0.0244;MQ=59.41;MQ0=1;MQRankSum=1.168;QD=12.80;ReadPosRankSum=-1.580 GT:AD:DP:GQ:PL 0/0:79,0:79:99:0,223,2557 0/0:69,0:69:99:0,196,2214 0/0:78,0:78:99:0,223,2425 0/0:249,0:250:99:0,647,7980 0/0:218,0:218:99:0,569,7124 0/0:197,0:197:99:0,511,6307 0/0:155,0:155:99:0,394,4866 0/0:171,0:171:99:0,457,5564 0/0:93,0:93:99:0,250,2865 0/0:71,0:71:99:0,192,2143 0/0:73,0:73:99:0,208,2331 0/0:86,0:86:99:0,250,2788 0/0:70,0:70:99:0,186,2020 0/0:67,0:67:99:0,195,2191 0/0:250,0:250:99:0,653,7481 0/0:74,0:74:99:0,198,2225 0/0:110,0:110:99:0,310,3523 0/0:79,0:80:99:0,211,2409 0/0:114,0:115:99:0,301,3407 0/0:159,0:159:99:0,436,5028 0/0:132,0:132:99:0,352,4009 0/0:83,0:83:99:0,229,2654 0/0:219,0:219:99:0,581,7231 0/0:141,0:141:99:0,352,4393 0/0:178,0:178:99:0,472,5850 0/0:145,0:145:99:0,364,4548 0/0:60,0:60:99:0,165,1869 0/0:71,0:71:99:0,198,2228 0/0:46,0:46:99:0,135,1493 0/1:37,41:78:99:1127,0,939 0/0:57,0:57:99:0,159,1780 0/0:134,0:134:99:0,340,3930 0/1:44,36:80:99:958,0,1163 0/0:84,0:84:99:0,247,2735 0/0:80,0:80:99:0,220,2445 0/0:68,0:68:99:0,183,2077 0/0:106,0:106:99:0,280,3155 0/0:87,0:87:99:0,235,2636 0/0:68,1:69:99:0,161,2105 0/0:77,0:77:99:0,217,2392 0/0:62,0:62:99:0,177,1989 0/0:101,0:101:99:0,274,3107 10 102057334 . CCCAACTCATCCTGCGAGTGGTATGTCCA C 654.12 . AC=4;AF=0.048;AN=84;BaseQRankSum=11.261;DP=1241;FS=91.568;HRun=0;HaplotypeScore=559.7902;InbreedingCoeff=-0.0500;MQ=58.39;MQ0=0;MQRankSum=8.463;QD=4.01;ReadPosRankSum=-10.855 GT:AD:DP:GQ:PL 0/0:20,0:20:57.18:0,57,4972 0/0:23,0:23:66.23:0,66,4742 0/1:15,9:24:99:118,0,3741 0/1:59,26:85:99:322,0,12370 0/0:46,0:46:99:0,132,10420 0/0:28,0:28:72.23:0,72,5324 0/0:29,0:29:87.25:0,87,6416 0/0:31,0:30:81.28:0,81,5707 0/0:23,0:23:63.22:0,63,4870 0/0:16,0:16:42.13:0,42,2743 0/0:21,0:21:60.20:0,60,4720 0/0:28,0:28:69.23:0,69,5511 0/0:22,0:22:63.21:0,63,4542 0/1:18,9:27:99:104,0,4730 0/0:71,0:71:99:0,193,17577 0/0:26,0:26:75.25:0,75,6468 0/0:27,0:27:78.26:0,78,5023 0/0:28,0:28:81.28:0,81,4973 0/0:33,0:33:99:0,99,5974 0/0:32,0:32:90.30:0,90,7045 0/0:41,0:41:99:0,120,9935 0/0:23,0:23:69.23:0,69,5508 0/0:52,0:52:99:0,141,10937 0/0:27,0:26:72.18:0,72,5359 0/0:34,0:33:99:0,99,6318 0/0:34,0:31:93.32:0,93,7845 0/0:16,0:16:42.14:0,42,3766 0/0:25,0:25:63.69:0,64,5344 0/0:15,0:15:39.13:0,39,3397 0/0:21,0:21:60.21:0,60,5532 0/0:19,0:19:57.20:0,57,4708 0/0:53,0:53:99:0,141,11766 0/0:28,0:28:75.25:0,75,5639 0/0:12,0:12:36.12:0,36,2514 0/1:16,11:27:99:205,0,3651 0/0:32,0:32:90.31:0,90,7154 0/0:41,0:41:99:0,99,7239 0/0:24,0:24:69.23:0,69,4950 0/0:16,0:16:45.15:0,45,3763 0/0:19,0:19:48.14:0,48,3212 0/0:25,0:24:66.21:0,66,4508 0/0:17,0:17:51.17:0,51,3975 10 102258991 . C T 289.14 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.043;DP=1250;Dels=0.00;FS=6.570;HRun=0;HaplotypeScore=0.6140;InbreedingCoeff=-0.0121;MQ=59.22;MQ0=0;MQRankSum=-0.069;QD=12.05;ReadPosRankSum=-1.677 GT:AD:DP:GQ:PL 0/0:32,0:32:87.23:0,87,981 0/0:32,0:32:84.23:0,84,966 0/0:18,0:18:48.12:0,48,544 0/0:37,0:37:93.28:0,93,1150 0/0:39,0:39:99:0,105,1291 0/0:36,0:36:99:0,105,1241 0/0:25,0:25:69.20:0,69,852 0/0:16,0:16:39.11:0,39,483 0/0:22,0:22:60.17:0,60,692 0/0:20,0:20:57.15:0,57,636 0/0:23,0:23:66.15:0,66,715 0/0:21,0:21:60.17:0,60,696 0/0:18,0:18:51.13:0,51,576 0/0:28,0:28:72.21:0,72,865 0/0:68,0:68:99:0,171,1975 0/0:21,0:21:60.15:0,60,658 0/0:27,0:27:81.21:0,81,885 0/0:21,0:21:54.15:0,54,630 0/0:53,0:53:99:0,141,1584 0/0:51,0:51:99:0,138,1564 0/0:39,0:39:99:0,99,1177 0/0:35,0:35:93.27:0,93,1089 0/0:43,0:43:99:0,114,1423 0/0:34,0:34:96.28:0,96,1144 0/0:27,0:27:69.21:0,69,866 0/0:19,0:19:48.15:0,48,599 0/0:17,0:17:42.12:0,42,502 0/0:29,0:29:81.19:0,81,902 0/0:18,0:18:54.14:0,54,594 0/0:15,0:15:42.12:0,42,477 0/0:33,0:33:90.24:0,90,1031 0/0:55,0:55:99:0,135,1581 0/0:27,0:27:75.18:0,75,833 0/0:33,0:33:93.22:0,93,1022 0/0:20,0:20:57.15:0,57,634 0/0:19,0:19:54.14:0,54,604 0/0:49,0:49:99:0,135,1529 0/0:26,0:26:72.19:0,72,816 0/1:10,14:24:99:335,0,272 0/0:26,0:26:72.18:0,72,803 0/0:23,0:23:69.15:0,69,734 0/0:31,0:31:90.24:0,90,1019 10 102265183 . G A 30823.26 . AC=15;AF=0.179;AN=84;BaseQRankSum=-24.723;DP=6635;DS;Dels=0.00;FS=2.118;HRun=0;HaplotypeScore=2.9685;InbreedingCoeff=0.1072;MQ=59.11;MQ0=0;MQRankSum=0.955;QD=15.61;ReadPosRankSum=-0.566 GT:AD:DP:GQ:PL 1/1:1,136:137:99:4469,344,0 0/1:74,59:133:99:1576,0,2019 0/0:126,0:126:99:0,331,4135 0/0:210,0:211:99:0,590,7713 0/0:244,1:245:99:0,622,8797 0/0:209,0:209:99:0,581,7662 0/1:98,94:192:99:2604,0,2936 0/0:236,0:237:99:0,626,8184 0/0:133,0:133:99:0,367,4516 0/0:125,0:125:99:0,322,4018 0/0:132,1:133:99:0,349,4334 0/0:134,0:134:99:0,355,4409 0/0:106,0:106:99:0,274,3410 0/0:138,0:138:99:0,358,4433 0/1:143,107:250:99:2826,0,4068 0/0:129,0:129:99:0,364,4463 0/1:73,59:132:99:1611,0,2213 0/0:119,0:119:99:0,328,4026 0/0:187,0:187:99:0,484,5914 0/0:217,0:217:99:0,527,6655 0/0:208,0:210:99:0,563,6835 0/0:153,0:153:99:0,397,4994 0/0:244,0:244:99:0,680,9035 0/1:90,89:180:99:2446,0,2689 0/1:109,105:214:99:2898,0,3183 0/0:194,0:194:99:0,530,7071 0/1:46,39:85:99:1094,0,1418 0/1:59,61:120:99:1652,0,1668 0/0:122,0:122:99:0,325,4029 1/1:0,137:137:99:4379,364,0 0/1:61,64:125:99:1770,0,1782 0/0:168,0:168:99:0,445,5569 0/1:74,65:139:99:1707,0,2174 0/0:123,0:123:99:0,340,4188 0/0:116,0:116:99:0,301,3783 0/0:123,0:123:99:0,343,4203 0/0:203,0:203:99:0,517,6292 0/0:164,1:165:99:0,416,5480 0/1:68,63:131:99:1792,0,1849 0/0:129,0:129:99:0,352,4316 0/0:118,1:120:99:0,290,3902 0/0:141,0:141:99:0,385,4790 10 102734778 . C G 11562.93 . AC=21;AF=0.250;AN=84;BaseQRankSum=10.782;DP=1531;Dels=0.00;FS=5.063;HRun=0;HaplotypeScore=0.7784;InbreedingCoeff=0.1745;MQ=59.18;MQ0=0;MQRankSum=6.884;QD=17.39;ReadPosRankSum=1.455 GT:AD:DP:GQ:PL 0/1:14,7:21:99:208,0,357 0/1:13,10:23:99:324,0,356 0/1:14,5:19:99:117,0,394 1/1:0,60:60:99:2064,150,0 1/1:0,51:51:99:1850,132,0 0/1:32,21:53:99:646,0,924 1/1:0,33:33:81.26:1107,81,0 0/0:67,0:67:99:0,166,2214 0/0:33,0:33:84.27:0,84,1106 0/1:13,7:20:99:171,0,403 0/0:33,0:33:81.25:0,81,1042 0/1:6,10:16:99:263,0,188 0/0:27,0:27:72.23:0,72,919 1/1:0,23:23:63.20:815,63,0 0/1:65,56:122:99:1514,0,1632 0/1:9,5:14:99:154,0,263 0/0:36,0:36:90.29:0,90,1170 0/1:20,14:34:99:381,0,546 0/1:20,14:35:99:412,0,539 0/0:47,0:47:99:0,129,1638 0/0:42,0:42:99:0,102,1294 0/0:27,0:27:69.22:0,69,880 0/1:47,24:71:99:658,0,1459 0/0:47,0:47:99:0,108,1505 0/0:61,0:61:99:0,147,2029 0/1:31,20:51:99:534,0,992 0/0:19,0:19:51.16:0,51,655 0/0:36,0:36:93.29:0,93,1168 0/0:36,0:36:87.28:0,87,1141 0/0:27,0:27:66.21:0,66,866 0/0:20,0:20:60.19:0,60,767 0/0:43,0:43:99:0,111,1448 0/0:25,0:25:60.18:0,60,782 0/0:27,0:27:78.23:0,78,980 0/0:29,0:29:75.24:0,75,959 0/0:25,0:25:63.20:0,63,827 0/0:39,0:39:99:0,99,1260 0/0:23,1:24:26.22:0,26,733 0/0:25,0:25:72.23:0,72,923 0/0:36,0:36:99:0,102,1267 0/0:35,0:35:87.27:0,87,1119 0/1:8,11:19:99:347,0,185 10 102795430 . T G 118.17 . 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T TG 23.45 . 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G T 4876.41 . 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G A 22433.27 . 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A G 25949.68 . AC=21;AF=0.250;AN=84;BaseQRankSum=0.703;DP=3714;DS;Dels=0.00;FS=4.708;HRun=1;HaplotypeScore=1.8784;InbreedingCoeff=0.0476;MQ=59.29;MQ0=0;MQRankSum=0.530;QD=16.33;ReadPosRankSum=-0.065 GT:AD:DP:GQ:PL 0/1:24,25:49:99:670,0,615 0/1:38,41:79:99:1123,0,1031 0/0:59,0:60:99:0,159,1978 0/0:145,0:145:99:0,379,4828 0/0:124,0:124:99:0,334,4279 0/0:109,0:109:99:0,280,3604 0/0:71,0:71:99:0,181,2305 0/1:41,50:91:99:1533,0,1209 0/0:67,0:69:99:0,184,2286 0/1:34,33:67:99:875,0,863 0/0:69,0:69:99:0,199,2450 0/0:68,0:68:99:0,172,2194 0/0:66,0:66:99:0,153,1969 0/1:37,36:74:99:911,0,1068 0/1:96,93:191:99:2614,0,2377 0/1:48,34:82:99:951,0,1301 0/0:46,0:46:99:0,126,1590 0/0:62,0:62:99:0,169,2119 0/0:165,1:167:99:0,371,5020 0/0:170,0:170:99:0,421,5363 0/1:73,84:158:99:2121,0,2080 1/1:1,92:93:99:2922,205,0 0/1:66,74:140:99:2087,0,1940 0/1:39,45:84:99:1296,0,1075 0/1:55,39:94:99:1077,0,1633 0/1:43,35:78:99:1023,0,1216 0/0:44,0:44:99:0,129,1547 0/0:74,0:74:99:0,205,2522 0/0:59,0:59:99:0,156,1930 0/0:56,0:56:99:0,159,1978 0/0:73,0:73:99:0,193,2357 0/0:132,0:132:99:0,358,4461 0/0:105,0:105:99:0,286,3587 0/0:69,1:71:99:0,190,2373 0/1:22,28:50:99:792,0,643 0/1:20,31:51:99:830,0,576 0/0:133,0:133:99:0,340,4263 0/0:79,0:79:99:0,214,2646 0/0:73,0:73:99:0,202,2481 1/1:0,68:68:99:2204,181,0 1/1:4,59:63:52.04:1855,52,0 0/1:41,36:77:99:1065,0,1120 10 103361088 . C T 26536.12 . 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T C 52105.05 . 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G T 26.84 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.202;DP=147;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1988;InbreedingCoeff=0.1014;MQ=59.11;MQ0=0;MQRankSum=-0.610;QD=13.42;ReadPosRankSum=-0.946 GT:AD:DP:GQ:PL 0/0:6,0:6:12.03:0,12,136 0/0:1,0:1:3.01:0,3,38 0/0:3,0:3:9.02:0,9,98 0/0:6,0:6:18.05:0,18,209 0/0:8,0:8:24.07:0,24,283 0/0:1,0:1:3.01:0,3,32 0/1:0,2:2:0.97:78,6,0 0/0:3,0:3:9.03:0,9,107 0/0:2,0:2:3.01:0,3,39 0/0:2,0:2:3.01:0,3,37 0/0:2,0:2:6.02:0,6,68 0/0:1,0:1:3.01:0,3,32 0/0:3,0:3:9.03:0,9,103 0/0:5,0:5:15.04:0,15,172 0/0:8,0:8:21.05:0,21,220 0/0:5,0:5:15.04:0,15,162 0/0:3,0:3:6.01:0,6,62 0/0:3,0:3:6.02:0,6,71 0/0:7,0:7:21.06:0,21,239 0/0:4,0:4:12.02:0,12,122 0/0:7,0:7:18.05:0,18,198 0/0:3,0:3:6.02:0,6,76 0/0:7,0:7:18.05:0,18,206 0/0:1,0:1:3.01:0,3,34 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,32 0/0:1,0:1:3.01:0,3,38 0/0:5,0:5:12.03:0,12,139 0/0:3,0:3:6.02:0,6,77 0/0:4,0:4:12.03:0,12,132 0/0:4,0:4:12.03:0,12,134 0/0:5,0:5:15.04:0,15,169 0/0:3,0:3:9.03:0,9,107 0/0:1,0:1:3.01:0,3,31 0/0:3,0:3:9.03:0,9,105 0/0:2,0:2:6.02:0,6,70 0/0:8,0:8:24.06:0,24,260 0/0:3,0:3:6.01:0,6,64 0/0:2,0:2:3.01:0,3,35 0/0:2,0:2:6.02:0,6,71 0/0:3,0:3:9.02:0,9,96 0/0:3,0:3:6.02:0,6,65 10 104159196 . A G 2465.32 . AC=68;AF=1.000;AN=68;DP=82;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0544;InbreedingCoeff=-0.1150;MQ=56.50;MQ0=0;QD=30.82 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:65,6,0 1/1:0,1:1:3.01:32,3,0 1/1:0,3:3:9.03:104,9,0 1/1:0,3:3:9.02:105,9,0 1/1:0,3:3:9.03:121,9,0 1/1:0,3:3:9.03:116,9,0 ./. 1/1:0,1:1:3:26,3,0 1/1:0,1:1:3.01:32,3,0 ./. 1/1:0,3:3:9.03:103,9,0 1/1:0,2:2:6.01:60,6,0 ./. 1/1:0,3:3:5.99:54,6,0 1/1:0,8:8:21.06:252,21,0 1/1:0,3:3:9.03:107,9,0 ./. ./. 1/1:0,1:1:3.01:32,3,0 1/1:0,3:3:9.03:104,9,0 1/1:0,4:4:6.02:77,6,0 1/1:0,3:3:9.02:102,9,0 1/1:0,2:2:6.02:74,6,0 1/1:0,1:1:3.01:37,3,0 1/1:0,1:1:3.01:39,3,0 1/1:0,1:1:2.98:22,3,0 1/1:0,1:1:3.01:33,3,0 1/1:0,2:2:3.01:33,3,0 1/1:0,1:1:3.01:32,3,0 1/1:0,2:2:6.01:62,6,0 1/1:0,3:3:6.01:62,6,0 1/1:0,5:5:15.05:182,15,0 1/1:0,1:1:3.01:36,3,0 ./. 1/1:0,1:1:3.01:32,3,0 ./. 1/1:0,3:3:9.02:90,9,0 1/1:0,3:3:9.02:102,9,0 1/1:0,2:2:6.02:67,6,0 1/1:0,2:2:6.01:63,6,0 ./. 1/1:0,2:2:5.99:52,6,0 10 104164354 . T G 21.12 . AC=1;AF=0.012;AN=84;BaseQRankSum=-16.296;DP=2650;Dels=0.00;FS=163.923;HRun=3;HaplotypeScore=1.4450;InbreedingCoeff=-0.0192;MQ=57.85;MQ0=0;MQRankSum=-0.336;QD=0.32;ReadPosRankSum=-6.038 GT:AD:DP:GQ:PL 0/0:28,19:47:81.14:0,81,885 0/0:24,21:46:63.15:0,63,723 0/0:28,15:44:78.14:0,78,842 0/0:85,63:152:99:0,123,2473 0/0:65,54:119:78.77:0,79,1917 0/0:65,41:106:67.99:0,68,1818 0/0:50,39:92:99:0,100,1347 0/0:57,40:98:99:0,120,1675 0/0:32,21:53:65.57:0,66,1001 0/0:22,13:35:2.25:0,2,453 0/0:21,21:44:63.14:0,63,701 0/0:20,17:37:60.16:0,60,686 0/0:13,7:20:33.09:0,33,384 0/0:12,15:27:33.05:0,33,356 0/0:88,48:136:99:0,150,2607 0/0:25,18:43:63.16:0,63,695 0/0:37,20:58:80.68:0,81,1208 0/0:20,19:40:20.73:0,21,584 0/1:40,25:65:67.21:67,0,1084 0/0:58,32:91:99:0,108,1656 0/0:49,33:82:99:0,129,1489 0/0:46,26:72:92.16:0,92,1267 0/0:78,81:161:99:0,116,2133 0/0:41,32:74:23.48:0,23,1116 0/0:58,32:91:99:0,159,1773 0/0:48,37:85:99:0,126,1422 0/0:14,16:30:18.41:0,18,419 0/0:26,26:52:46.46:0,46,755 0/0:23,14:37:57.14:0,57,634 0/0:21,23:44:28.52:0,29,613 0/0:14,21:35:6.62:0,7,396 0/0:58,35:93:99:0,129,1690 0/0:31,24:56:75.14:0,75,824 0/0:23,20:44:37.41:0,37,602 0/0:22,15:38:35.45:0,35,601 0/0:24,20:47:57.12:0,57,634 0/0:47,24:71:85.16:0,85,1546 0/0:22,10:32:38.50:0,38,678 0/0:27,15:42:44.74:0,45,823 0/0:29,13:42:81.17:0,81,891 0/0:16,15:31:26.42:0,26,502 0/0:28,9:38:72.19:0,72,842 10 104172267 . G C 106.32 . AC=7;AF=0.083;AN=84;BaseQRankSum=-9.231;DP=932;Dels=0.00;FS=97.586;HRun=2;HaplotypeScore=0.6849;InbreedingCoeff=-0.1354;MQ=58.63;MQ0=0;MQRankSum=0.013;QD=0.71;ReadPosRankSum=-6.373 GT:AD:DP:GQ:PL 0/0:17,6:23:36.07:0,36,414 0/0:11,4:15:30.07:0,30,337 0/0:15,2:17:27.07:0,27,314 0/1:28,10:38:15.57:16,0,626 0/0:36,1:37:84.24:0,84,1061 0/0:16,5:21:14.46:0,14,464 0/0:25,5:30:60.05:0,60,684 0/0:22,9:31:57.14:0,57,723 0/0:17,10:27:17.40:0,17,431 0/0:16,2:18:15.44:0,15,433 0/0:8,5:13:24.06:0,24,268 0/0:19,8:27:9.63:0,10,446 0/0:6,2:8:2.71:1,0,192 0/1:18,6:24:12.88:13,0,502 0/0:39,15:54:68.53:0,69,1030 0/1:11,8:19:30.23:30,0,232 0/0:11,7:18:0.47:0,0,309 0/0:15,3:18:6.59:0,7,382 0/0:17,5:22:10.50:0,10,518 0/0:25,8:33:34.42:0,34,595 0/1:14,9:23:68.03:68,0,394 0/0:20,0:20:54.14:0,54,627 0/0:37,9:46:52.69:0,53,981 0/1:11,4:15:26.04:26,0,281 0/0:16,3:19:14.41:0,14,402 0/0:17,6:23:39.11:0,39,491 0/0:13,1:14:33.10:0,33,397 0/0:21,5:26:42.10:0,42,517 0/0:14,2:16:4.42:0,4,324 0/0:16,3:19:33.08:0,33,394 0/0:15,6:21:39.10:0,39,451 0/0:19,1:20:51.11:0,51,593 0/0:13,4:17:27.07:0,27,332 0/0:12,5:17:2.76:1,0,292 0/0:14,2:16:0.58:0,1,330 0/0:21,3:24:39.07:0,39,453 0/0:20,2:22:42.10:0,42,488 0/0:10,4:14:21.03:0,21,235 0/1:10,8:18:44.76:45,0,267 0/0:16,5:21:2.64:0,3,343 0/1:10,2:12:15.92:16,0,200 0/0:11,5:16:24.07:0,24,284 10 104172267 . G GC 89.37 . AC=6;AF=0.071;AN=84;BaseQRankSum=3.934;DP=978;FS=192.282;HRun=2;HaplotypeScore=81.0867;InbreedingCoeff=-0.1221;MQ=58.54;MQ0=0;MQRankSum=-0.333;QD=0.74;ReadPosRankSum=-11.687 GT:AD:DP:GQ:PL 0/0:24,0:24:22.60:0,23,421 0/0:17,0:17:19.29:0,19,261 0/0:18,0:18:35.16:0,35,362 0/0:38,0:38:47.56:0,48,797 0/0:36,6:42:2.59:0,3,743 0/0:20,0:20:14.20:0,14,351 0/0:30,0:29:36.19:0,36,646 0/0:32,0:30:63.02:0,63,696 0/0:27,0:27:4.77:0,5,427 0/0:18,0:18:38.97:0,39,442 0/0:14,0:14:27.07:0,27,316 0/0:28,0:28:9.73:0,10,578 0/0:8,0:8:3.05:0,3,205 0/1:25,0:25:21.68:22,0,440 0/0:57,0:57:55.74:0,56,1071 0/1:20,0:20:27.16:27,0,266 0/0:17,0:17:1.08:5,0,207 0/0:20,0:20:10.35:0,10,357 0/0:23,0:23:6.18:0,6,448 0/0:36,0:36:45.03:0,45,758 0/1:26,0:26:91.10:91,0,347 0/0:18,3:21:10.19:0,10,405 0/0:47,0:47:50.05:0,50,884 0/1:17,0:17:13.78:14,0,291 0/0:18,0:18:18.71:0,19,358 0/0:23,0:23:46.17:0,46,581 0/0:12,6:18:10.05:0,10,310 0/0:26,0:26:33.15:0,33,555 0/0:19,0:19:8.87:0,9,312 0/0:20,0:20:36.55:0,37,433 0/0:20,0:20:18.08:0,18,487 0/0:23,0:23:51.55:0,52,586 0/0:18,0:18:21.06:0,21,260 0/0:17,0:17:1.96:2,0,341 0/0:16,0:16:34.63:0,35,386 0/0:27,0:27:50.50:0,51,582 0/0:21,0:21:44.90:0,45,507 0/0:15,0:15:22.31:0,22,267 0/1:19,0:19:33.80:34,0,271 0/0:21,0:21:4.20:0,4,323 0/1:14,0:14:5.62:6,0,242 0/0:18,0:18:20.11:0,20,250 10 104233412 . G A 1216.61 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.652;DP=2998;DS;Dels=0.00;FS=1.349;HRun=0;HaplotypeScore=2.2478;InbreedingCoeff=-0.0244;MQ=59.17;MQ0=0;MQRankSum=0.199;QD=14.31;ReadPosRankSum=0.029 GT:AD:DP:GQ:PL 0/1:19,23:44:99:677,0,520 0/1:18,23:41:99:602,0,392 0/0:33,0:33:90.24:0,90,1102 0/0:168,0:168:99:0,457,5900 0/0:182,0:184:99:0,493,6301 0/0:143,1:144:99:0,352,4702 0/0:93,0:95:99:0,244,3097 0/0:129,0:129:99:0,328,4166 0/0:52,0:52:99:0,138,1676 0/0:50,0:50:99:0,141,1694 0/0:47,0:47:99:0,135,1624 0/0:38,0:39:99:0,108,1262 0/0:39,0:39:99:0,108,1293 0/0:54,0:54:99:0,141,1735 0/0:144,0:145:99:0,352,4250 0/0:52,0:52:99:0,132,1608 0/0:52,0:52:99:0,147,1795 0/0:49,0:50:99:0,138,1646 0/0:79,0:80:99:0,204,2402 0/0:102,0:103:99:0,280,3382 0/0:72,0:74:99:0,187,2251 0/0:60,0:60:99:0,165,1945 0/0:161,0:164:99:0,442,5735 0/0:84,0:84:99:0,232,2928 0/0:128,0:128:99:0,352,4494 0/0:108,0:108:99:0,280,3615 0/0:43,0:43:99:0,117,1437 0/0:35,0:35:93.25:0,93,1121 0/0:39,0:40:99:0,111,1367 0/0:44,0:44:99:0,126,1490 0/0:43,0:43:99:0,117,1390 0/0:81,0:81:99:0,226,2751 0/0:69,0:69:99:0,190,2350 0/0:39,1:40:99:0,111,1357 0/0:46,0:46:99:0,126,1530 0/0:43,0:43:99:0,117,1367 0/0:62,0:63:99:0,168,2001 0/0:65,0:65:99:0,177,2138 0/0:38,0:38:99:0,102,1188 0/0:46,0:46:99:0,114,1343 0/0:41,0:41:99:0,108,1281 0/0:41,0:41:99:0,111,1350 10 104386934 . T C 11847.18 . AC=5;AF=0.060;AN=84;BaseQRankSum=21.319;DP=6736;DS;Dels=0.00;FS=0.203;HRun=1;HaplotypeScore=2.0469;InbreedingCoeff=-0.0633;MQ=59.50;MQ0=0;MQRankSum=4.260;QD=13.99;ReadPosRankSum=-1.160 GT:AD:DP:GQ:PL 0/0:116,1:117:99:0,295,3995 0/0:123,0:123:99:0,322,4002 0/0:113,0:113:99:0,307,3773 0/0:250,0:250:99:0,677,8440 0/0:250,0:250:99:0,680,8621 0/0:250,0:250:99:0,686,8891 0/1:126,108:235:99:3285,0,3695 0/0:250,0:250:99:0,659,8339 0/0:146,0:146:99:0,409,4998 0/0:113,2:115:99:0,262,3662 0/0:146,0:146:99:0,394,4867 0/0:133,0:133:99:0,373,4589 0/0:122,0:122:99:0,337,4153 0/0:112,0:112:99:0,316,3895 0/0:249,0:250:99:0,689,8398 0/0:107,0:107:99:0,307,3734 0/0:133,0:133:99:0,376,4620 0/1:64,46:110:99:1304,0,1911 0/1:118,115:233:99:3322,0,3202 0/0:213,0:214:99:0,569,7148 0/0:167,0:167:99:0,430,5419 0/0:111,0:111:99:0,298,3686 0/0:250,0:250:99:0,668,8440 0/0:243,0:243:99:0,638,8106 0/0:248,0:248:99:0,662,8439 0/0:248,0:248:99:0,650,8280 0/0:96,0:96:99:0,268,3282 0/0:131,0:131:99:0,361,4454 0/0:93,0:93:99:0,262,3197 0/0:114,2:116:99:0,274,3832 0/0:111,0:111:99:0,322,3944 0/0:187,0:187:99:0,485,6117 0/1:81,72:153:99:2120,0,2280 0/0:109,0:109:99:0,310,3785 0/0:111,0:111:99:0,310,3811 0/0:122,0:122:99:0,331,4116 0/0:172,0:172:99:0,439,5511 0/0:151,0:151:99:0,382,4776 0/1:57,59:116:99:1817,0,1588 0/0:131,0:131:99:0,367,4521 0/0:132,2:134:99:0,295,4428 0/0:127,0:127:99:0,349,4336 10 104414441 . A G 134.47 . AC=1;AF=0.012;AN=84;BaseQRankSum=-34.464;DP=6525;DS;Dels=0.00;FS=1730.430;HRun=2;HaplotypeScore=3.6396;InbreedingCoeff=-0.0120;MQ=59.12;MQ0=0;MQRankSum=-0.673;QD=0.64;ReadPosRankSum=-26.548 GT:AD:DP:GQ:PL 0/0:85,16:101:99:0,177,2653 0/0:92,30:122:99:0,139,2788 0/0:78,23:102:99:0,150,2374 0/0:173,51:224:99:0,304,5477 0/0:168,57:225:99:0,286,5548 0/0:165,57:223:99:0,359,5436 0/0:163,71:234:99:0,347,4951 0/0:163,59:224:99:0,310,4911 0/0:100,25:126:99:0,178,3015 0/0:92,18:110:99:0,161,2739 0/0:99,28:127:82.02:0,82,2977 0/0:95,24:119:92.30:0,92,2687 0/0:74,16:90:99:0,127,2371 0/0:102,17:120:99:0,172,3000 0/0:182,46:228:99:0,267,5650 0/0:104,21:125:99:0,135,3188 0/0:110,20:130:99:0,230,3394 0/0:84,18:102:84.70:0,85,2445 0/1:161,50:211:99:181,0,4680 0/0:202,31:233:99:0,479,6011 0/0:155,47:203:99:0,169,4610 0/0:134,20:154:99:0,321,4032 0/0:190,46:236:99:0,413,6236 0/0:165,58:224:99:0,284,5059 0/0:159,58:217:99:0,372,4867 0/0:172,53:225:99:0,322,5214 0/0:78,15:93:99:0,134,2477 0/0:92,23:115:99:0,167,2846 0/0:93,25:118:99:0,191,2970 0/0:91,27:118:99:0,131,2836 0/0:81,18:99:99:0,99,2477 0/0:183,36:220:99:0,437,5538 0/0:133,33:167:99:0,291,4067 0/0:99,24:124:99:0,165,3011 0/0:86,17:103:99:0,147,2554 0/0:117,15:133:99:0,247,3713 0/0:159,51:211:99:0,121,4621 0/0:104,28:133:66.71:0,67,3108 0/0:97,25:122:99:0,115,2847 0/0:103,20:123:99:0,204,3298 0/0:78,19:97:83.49:0,83,2243 0/0:92,22:114:99:0,119,2686 10 104488200 . G A 2054.62 . 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C T 1351.63 . 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T G 43.87 . 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T C 32227.78 . 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C T 37353.96 . 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G A 29 . 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A G 5480.76 . AC=4;AF=0.048;AN=84;BaseQRankSum=19.271;DP=4215;DS;Dels=0.00;FS=6.947;HRun=0;HaplotypeScore=1.4760;InbreedingCoeff=-0.0500;MQ=59.54;MQ0=0;MQRankSum=1.193;QD=13.88;ReadPosRankSum=-0.191 GT:AD:DP:GQ:PL 0/0:87,0:87:99:0,238,2825 0/0:99,1:100:99:0,239,3200 0/0:87,0:87:99:0,235,2776 0/0:127,0:127:99:0,358,4245 0/0:136,0:136:99:0,370,4486 0/1:79,57:136:99:1863,0,2240 0/1:52,54:106:99:1745,0,1511 0/0:138,0:138:99:0,367,4453 0/0:90,0:90:99:0,253,2953 0/0:74,1:75:99:0,205,2417 0/0:94,0:94:99:0,262,3073 0/0:81,0:81:99:0,226,2663 0/0:71,0:71:99:0,196,2305 0/1:33,31:64:99:861,0,933 0/0:250,0:250:99:0,692,8106 0/0:80,1:81:99:0,220,2591 0/0:113,1:114:99:0,316,3785 0/0:67,0:67:99:0,190,2199 0/0:106,0:109:99:0,292,3443 0/0:121,0:122:99:0,319,3869 0/0:120,0:120:99:0,322,3848 0/0:69,0:69:99:0,199,2307 0/0:130,0:130:99:0,358,4293 0/0:116,0:116:99:0,304,3748 0/0:123,0:123:99:0,331,4013 0/0:137,0:137:99:0,364,4419 0/0:61,0:61:99:0,165,1989 0/0:87,0:88:99:0,247,2900 0/0:70,0:70:99:0,199,2345 0/0:80,0:80:99:0,226,2661 0/0:76,0:77:99:0,211,2512 0/0:99,0:99:99:0,268,3245 0/0:64,0:64:99:0,174,2056 0/0:86,0:86:99:0,235,2837 0/0:97,0:97:99:0,256,3114 0/0:93,0:93:99:0,262,3077 0/0:95,0:95:99:0,232,2867 0/0:95,0:95:99:0,268,3132 0/1:52,37:89:99:1011,0,1535 0/0:101,0:101:99:0,286,3390 0/0:99,0:99:99:0,274,3240 0/0:89,0:90:99:0,250,2954 10 105798252 . C T 2802.48 . 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T C 132641.09 . AC=75;AF=0.893;AN=84;BaseQRankSum=12.419;DP=4577;DS;Dels=0.00;FS=0.828;HRun=0;HaplotypeScore=2.3039;InbreedingCoeff=-0.1200;MQ=59.34;MQ0=0;MQRankSum=1.656;QD=28.98;ReadPosRankSum=-2.592 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2508,199,0 1/1:0,85:85:99:3016,241,0 1/1:2,89:91:99:2970,173,0 0/1:98,87:185:99:2573,0,2708 0/1:86,91:178:99:2655,0,2287 1/1:0,119:119:99:4213,310,0 1/1:0,110:110:99:3760,280,0 1/1:0,127:127:99:4371,322,0 1/1:0,74:74:99:2525,199,0 1/1:0,90:90:99:3091,244,0 1/1:0,96:96:99:3133,244,0 1/1:0,93:93:99:3176,253,0 0/1:42,39:81:99:1151,0,1142 1/1:0,82:82:99:2765,217,0 1/1:1,224:225:99:7612,579,0 1/1:0,71:71:99:2418,193,0 1/1:0,107:107:99:3820,301,0 1/1:0,91:93:99:3225,256,0 0/1:81,78:159:99:2302,0,2381 0/1:79,79:158:99:2192,0,2188 1/1:0,151:151:99:5043,403,0 1/1:0,92:92:99:3141,247,0 1/1:1,161:162:99:5785,393,0 1/1:0,97:97:99:3463,259,0 0/1:77,63:140:99:1780,0,2131 1/1:0,113:113:99:3945,292,0 1/1:0,82:82:99:2712,214,0 1/1:0,104:104:99:3563,283,0 1/1:0,93:93:99:3136,247,0 1/1:0,87:87:99:3105,250,0 1/1:0,94:94:99:3243,256,0 0/1:71,64:135:99:1725,0,1989 0/1:48,49:97:99:1301,0,1320 1/1:0,86:86:99:3030,241,0 1/1:0,72:72:99:2569,205,0 1/1:0,82:82:99:2877,229,0 1/1:0,136:136:99:4548,364,0 1/1:0,97:97:99:3332,265,0 0/1:37,34:71:99:1011,0,1014 1/1:0,117:117:99:4110,325,0 1/1:1,86:87:99:2787,191,0 1/1:0,83:83:99:2958,232,0 10 105819956 . G A 78358.62 . 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C T 1987.65 . AC=3;AF=0.036;AN=84;BaseQRankSum=-3.039;DP=1026;Dels=0.00;FS=20.252;HRun=1;HaplotypeScore=0.4292;InbreedingCoeff=-0.0371;MQ=59.37;MQ0=0;MQRankSum=1.429;QD=17.75;ReadPosRankSum=0.191 GT:AD:DP:GQ:PL 0/0:23,0:23:69.22:0,69,881 0/0:23,0:23:63.20:0,63,810 0/0:12,0:12:33.10:0,33,420 0/1:9,26:35:99:835,0,262 0/0:32,0:32:96.32:0,96,1331 0/0:35,0:35:99:0,99,1354 0/0:28,0:28:78.26:0,78,1081 0/0:37,0:37:99:0,111,1534 0/0:19,0:19:57.18:0,57,733 0/0:19,0:19:57.18:0,57,725 0/0:19,0:19:51.17:0,51,666 0/0:27,0:27:75.24:0,75,959 0/0:19,0:19:57.18:0,57,722 0/0:16,0:16:48.15:0,48,601 0/0:67,0:67:99:0,175,2243 0/0:21,0:21:57.18:0,57,734 0/0:33,0:33:84.27:0,84,1096 0/0:33,0:33:87.28:0,87,1136 0/0:33,1:34:90.25:0,90,1130 0/0:31,0:31:81.26:0,81,1048 0/0:23,0:23:66.21:0,66,848 0/0:14,0:14:39.12:0,39,503 0/1:31,26:57:99:825,0,965 0/0:28,0:28:75.25:0,75,1053 0/0:29,0:29:81.27:0,81,1138 0/0:33,0:33:96.32:0,96,1328 0/0:9,0:9:27.09:0,27,351 0/1:7,13:20:99:402,0,200 0/0:18,0:18:54.17:0,54,694 0/0:21,0:21:60.19:0,60,763 0/0:15,0:15:45.14:0,45,577 0/0:30,0:30:81.26:0,81,1058 0/0:15,0:15:33.11:0,33,444 0/0:19,0:19:54.17:0,54,695 0/0:18,0:18:54.17:0,54,675 0/0:14,0:14:42.13:0,42,522 0/0:15,0:15:36.11:0,36,455 0/0:20,0:20:57.17:0,57,721 0/0:14,0:14:42.13:0,42,526 0/0:15,0:15:45.15:0,45,579 0/0:18,0:18:51.16:0,51,645 0/0:18,0:18:54.17:0,54,695 10 105939643 . G A 2201.89 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.999;DP=5592;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.5056;InbreedingCoeff=-0.0244;MQ=59.62;MQ0=0;MQRankSum=-1.718;QD=10.95;ReadPosRankSum=-1.054 GT:AD:DP:GQ:PL 0/0:86,0:86:99:0,226,2687 0/0:123,0:123:99:0,337,3945 0/0:85,2:87:99:0,158,2618 0/0:234,0:234:99:0,602,7735 0/0:232,0:232:99:0,617,7956 0/0:235,0:236:99:0,602,7744 0/0:205,1:207:99:0,542,7013 0/0:247,0:248:99:0,593,7754 0/0:105,0:105:99:0,265,3186 0/0:93,0:93:99:0,241,2880 0/0:98,0:98:99:0,247,2989 0/0:110,0:110:99:0,283,3374 0/0:77,0:77:99:0,202,2365 0/0:87,0:87:99:0,241,2813 0/0:250,0:250:99:0,647,7728 0/0:53,0:53:99:0,156,1828 0/0:102,0:102:99:0,280,3298 0/0:104,0:104:99:0,277,3314 0/0:156,0:156:99:0,415,4889 0/0:142,0:142:99:0,349,4316 0/0:154,0:154:99:0,394,4805 0/0:71,0:71:99:0,181,2174 0/0:250,0:250:99:0,662,8534 0/0:206,0:206:99:0,545,6951 0/0:242,0:242:99:0,620,8055 0/0:216,0:217:99:0,533,6904 0/0:98,0:98:99:0,250,3001 0/0:92,0:92:99:0,256,3010 0/0:86,0:86:99:0,238,2781 0/0:113,0:113:99:0,289,3454 0/0:78,0:78:99:0,211,2528 0/0:159,0:159:99:0,397,4846 0/0:117,0:118:99:0,307,3651 0/1:66,39:105:99:1108,0,1731 0/0:77,0:77:99:0,202,2403 0/1:52,43:96:99:1156,0,1395 0/0:139,0:140:99:0,364,4337 0/0:99,0:99:99:0,265,3153 0/0:74,0:74:99:0,205,2392 0/0:96,0:96:99:0,259,3066 0/0:100,0:100:99:0,268,3195 0/0:91,0:91:99:0,247,2957 10 106014706 . G A 311.66 . 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C A 19115.22 . 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A G 697.85 . 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A C 99.24 . AC=5;AF=0.060;AN=84;BaseQRankSum=-18.399;DP=2914;Dels=0.00;FS=688.099;HRun=2;HaplotypeScore=1.5779;InbreedingCoeff=-0.0633;MQ=58.96;MQ0=0;MQRankSum=-0.713;QD=0.31;ReadPosRankSum=-11.045 GT:AD:DP:GQ:PL 0/0:42,25:67:72.08:0,72,1374 0/0:27,20:47:59.55:0,60,928 0/0:34,24:58:39.22:0,39,1034 0/0:68,52:120:42.47:0,42,1947 0/0:52,55:107:69.29:0,69,1582 0/0:67,44:111:99:0,195,2330 0/0:40,28:68:83.36:0,83,1379 0/0:51,44:95:82.46:0,82,1593 0/0:36,28:64:49.90:0,50,1184 0/1:28,25:54:41.98:42,0,806 0/0:21,18:40:35.48:0,35,656 0/0:30,27:58:65.50:0,66,1020 0/0:41,27:68:53.03:0,53,1257 0/0:37,28:66:30.05:0,30,1207 0/0:109,78:188:54.45:0,54,3360 0/0:33,15:48:68.81:0,69,1102 0/1:34,25:59:50.37:50,0,1051 0/1:34,26:60:42.53:43,0,1000 0/1:49,31:80:16.52:17,0,1551 0/0:52,33:85:99:0,120,1685 0/0:41,19:60:53.28:0,53,1291 0/0:33,23:56:99:0,99,1158 0/0:55,60:115:20.21:0,20,1818 0/0:46,32:78:78.19:0,78,1555 0/0:64,30:94:99:0,190,2307 0/0:37,27:65:77.38:0,77,1328 0/0:25,16:41:51.55:0,52,872 0/0:27,33:60:21.05:0,21,817 0/0:34,23:57:42.96:0,43,1037 0/0:27,17:44:39.65:0,40,862 0/0:25,12:37:72.22:0,72,877 0/0:43,27:70:52.76:0,53,1268 0/0:28,22:50:43.87:0,44,842 0/0:41,17:58:27.95:0,28,1322 0/0:33,23:56:71.49:0,71,1117 0/0:37,31:68:97.28:0,97,1249 0/0:38,28:66:49.47:0,49,1185 0/0:38,26:64:99:0,105,1256 0/1:41,29:70:43.77:44,0,1298 0/0:32,21:53:93.23:0,93,1072 0/0:33,19:52:70.59:0,71,1080 0/0:35,22:57:70.95:0,71,1173 10 106039185 . A G 35691.55 . 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G T 2104.25 . AC=2;AF=0.024;AN=84;BaseQRankSum=6.561;DP=2804;Dels=0.00;FS=9.145;HRun=0;HaplotypeScore=1.4892;InbreedingCoeff=-0.0244;MQ=59.34;MQ0=0;MQRankSum=1.249;QD=10.90;ReadPosRankSum=-1.598 GT:AD:DP:GQ:PL 0/0:36,0:36:96.24:0,96,1064 0/0:65,0:66:99:0,171,1946 0/0:43,0:43:99:0,102,1142 0/0:145,2:149:99:0,316,4396 0/0:119,1:120:99:0,295,3905 0/0:80,0:80:99:0,211,2467 0/0:91,0:91:99:0,235,2810 0/0:103,0:103:99:0,274,3324 0/0:51,0:51:99:0,141,1552 0/0:57,0:57:99:0,141,1612 0/0:43,0:44:99:0,120,1330 0/0:44,0:44:99:0,123,1346 0/0:35,0:35:93.22:0,93,1028 0/0:43,0:43:99:0,120,1326 0/0:161,0:161:99:0,409,4539 0/0:46,0:46:99:0,120,1344 0/0:53,0:53:99:0,132,1481 0/0:44,0:44:99:0,114,1261 0/1:57,39:97:99:983,0,1457 0/1:48,46:96:99:1183,0,1189 0/0:65,0:65:99:0,168,1881 0/0:47,0:47:99:0,129,1421 0/0:131,0:131:99:0,349,4178 0/0:81,0:81:99:0,211,2514 0/0:95,0:96:99:0,241,2888 0/0:93,0:93:99:0,232,2737 0/0:44,0:44:99:0,129,1431 0/0:57,0:57:99:0,147,1648 0/0:27,0:28:75.15:0,75,811 0/0:51,0:51:99:0,141,1506 0/0:39,0:39:99:0,111,1235 0/0:99,0:99:99:0,247,2847 0/0:48,1:50:99:0,117,1276 0/0:46,0:46:99:0,129,1401 0/0:51,0:52:99:0,147,1589 0/0:51,0:51:99:0,120,1342 0/0:75,0:76:99:0,199,2225 0/0:54,0:55:99:0,147,1674 0/0:44,0:44:99:0,123,1372 0/0:47,0:48:99:0,126,1393 0/0:37,0:37:99:0,108,1202 0/0:55,0:55:99:0,150,1682 10 106139955 . C A 10.73 . 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C T 68074.57 . AC=46;AF=0.548;AN=84;BaseQRankSum=6.277;DP=3964;DS;Dels=0.00;FS=18.589;HRun=0;HaplotypeScore=1.9677;InbreedingCoeff=0.2311;MQ=59.31;MQ0=0;MQRankSum=-1.173;QD=23.22;ReadPosRankSum=0.376 GT:AD:DP:GQ:PL 0/1:53,50:103:99:1408,0,1427 0/1:57,46:103:99:1290,0,1420 0/0:86,0:86:99:0,238,2749 0/1:57,78:135:99:2264,0,1535 0/0:97,0:97:99:0,262,3313 0/1:53,43:96:99:1218,0,1505 1/1:0,89:89:99:2867,226,0 0/0:85,0:85:99:0,223,2820 0/1:37,46:83:99:1245,0,954 0/0:72,0:72:99:0,187,2161 1/1:1,78:79:99:2662,194,0 0/1:47,36:84:99:1002,0,1307 0/0:75,0:75:99:0,202,2342 1/1:0,75:75:99:2614,217,0 1/1:1,228:229:99:7107,587,0 0/1:35,30:65:99:839,0,930 1/1:0,91:91:99:3116,256,0 0/0:81,1:82:99:0,201,2612 0/0:122,0:124:99:0,325,3735 0/0:121,0:121:99:0,337,3939 1/1:0,105:105:99:3464,286,0 0/1:46,46:92:99:1177,0,1232 0/1:66,61:127:99:1750,0,1955 0/0:101,0:101:99:0,259,3276 0/1:46,52:98:99:1523,0,1282 0/0:98,0:98:99:0,265,3292 0/1:37,37:74:99:970,0,959 0/1:43,26:70:99:671,0,1195 0/1:51,35:86:99:960,0,1308 1/1:0,78:78:99:2594,217,0 0/1:40,40:80:99:1130,0,1031 1/1:0,101:101:99:3296,268,0 1/1:0,74:74:99:2359,199,0 0/1:42,39:81:99:1077,0,1171 1/1:0,92:92:99:3112,259,0 0/0:91,0:91:99:0,256,2960 1/1:0,122:123:99:3942,322,0 0/1:38,34:72:99:947,0,1041 1/1:0,95:95:99:3158,256,0 1/1:0,97:97:99:3126,256,0 1/1:1,67:68:99:2290,166,0 1/1:1,86:87:99:2897,241,0 10 108367020 . C T 2445.17 . 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G A 810.23 . 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A G 4745.46 . 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A C 1031.18 . 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G A 1480.86 . 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C A 658.86 . 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G A 270253.46 . AC=82;AF=0.976;AN=84;BaseQRankSum=7.704;DP=8154;DS;Dels=0.00;FS=6.049;HRun=0;HaplotypeScore=4.5080;InbreedingCoeff=-0.0244;MQ=58.96;MQ0=0;MQRankSum=0.730;QD=33.14;ReadPosRankSum=2.877 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5721,475,0 1/1:1,191:192:99:6381,536,0 1/1:0,159:160:99:5301,451,0 1/1:0,244:244:99:8465,710,0 1/1:0,247:247:99:8547,713,0 1/1:0,239:239:99:8561,698,0 1/1:0,194:194:99:6642,545,0 1/1:0,178:178:99:6231,517,0 1/1:0,197:198:99:6688,569,0 1/1:0,158:158:99:5185,436,0 1/1:0,171:171:99:5824,490,0 1/1:0,158:159:99:5289,448,0 1/1:0,123:123:99:4179,355,0 1/1:0,189:189:99:6370,530,0 1/1:0,249:249:99:8582,731,0 1/1:1,181:182:99:6163,518,0 1/1:0,165:165:99:5611,475,0 1/1:0,160:160:99:5555,466,0 1/1:0,229:230:99:7714,647,0 1/1:0,248:248:99:8491,716,0 1/1:0,245:245:99:8084,686,0 1/1:0,228:229:99:7496,626,0 1/1:0,240:240:99:8221,680,0 1/1:0,178:178:99:6219,515,0 1/1:1,215:216:99:7460,620,0 1/1:0,194:195:99:6553,542,0 1/1:0,138:138:99:4601,385,0 1/1:0,192:192:99:6420,539,0 1/1:0,185:186:99:6270,527,0 1/1:0,179:179:99:6126,520,0 1/1:0,161:161:99:5483,454,0 1/1:0,250:250:99:8382,695,0 1/1:0,216:216:99:7265,620,0 1/1:0,194:194:99:6719,563,0 1/1:1,176:177:99:6067,511,0 1/1:1,168:172:99:5674,454,0 1/1:0,225:225:99:7568,638,0 1/1:0,190:190:99:6476,548,0 1/1:0,195:196:99:6708,569,0 0/1:104,105:209:99:3029,0,2635 0/1:62,85:147:99:2424,0,1523 1/1:0,161:162:99:5512,463,0 10 112266823 . C T 265580.58 . AC=82;AF=0.976;AN=84;BaseQRankSum=5.875;DP=8063;DS;Dels=0.00;FS=4.224;HRun=0;HaplotypeScore=4.5706;InbreedingCoeff=-0.0244;MQ=58.96;MQ0=0;MQRankSum=-0.249;QD=32.94;ReadPosRankSum=3.359 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5574,469,0 1/1:0,191:191:99:6393,539,0 1/1:0,157:157:99:5288,448,0 1/1:0,243:243:99:8456,710,0 1/1:0,243:243:99:8355,698,0 1/1:0,239:239:99:8379,686,0 1/1:0,191:192:99:6586,542,0 1/1:0,176:176:99:6110,511,0 1/1:0,193:194:99:6459,548,0 1/1:0,155:155:99:5075,427,0 1/1:0,171:171:99:5680,481,0 1/1:0,161:161:99:5138,436,0 1/1:1,121:122:99:3925,337,0 1/1:0,185:185:99:6133,514,0 1/1:1,245:246:99:8264,684,0 1/1:0,179:179:99:6016,505,0 1/1:0,159:159:99:5323,448,0 1/1:1,158:159:99:5404,460,0 1/1:0,226:227:99:7650,641,0 1/1:0,248:248:99:8606,728,0 1/1:0,239:242:99:8067,686,0 1/1:0,222:223:99:7184,602,0 1/1:0,239:239:99:8113,674,0 1/1:0,177:177:99:6227,512,0 1/1:0,217:218:99:7475,623,0 1/1:0,194:194:99:6640,551,0 1/1:0,134:134:99:4432,373,0 1/1:0,188:189:99:6357,539,0 1/1:0,183:184:99:6029,508,0 1/1:0,178:178:99:5983,508,0 1/1:0,155:155:99:5235,442,0 1/1:0,249:249:99:8370,698,0 1/1:0,210:211:99:6981,593,0 1/1:0,194:194:99:6601,557,0 1/1:0,175:175:99:6141,518,0 1/1:1,165:166:99:5521,466,0 1/1:0,221:221:99:7440,632,0 1/1:0,188:188:99:6400,548,0 1/1:0,194:194:99:6672,566,0 0/1:102,103:206:99:2861,0,2656 0/1:64,85:149:99:2435,0,1640 1/1:0,161:161:99:5600,475,0 10 113921443 . G A 31.67 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.946;DP=1353;Dels=0.00;FS=160.800;HRun=1;HaplotypeScore=1.8344;InbreedingCoeff=-0.0244;MQ=58.95;MQ0=0;MQRankSum=5.970;QD=0.43;ReadPosRankSum=-5.534 GT:AD:DP:GQ:PL 0/0:33,0:33:96.27:0,96,1150 0/0:25,0:25:69.21:0,69,863 0/0:26,0:26:75.24:0,75,957 0/0:59,0:59:99:0,175,2292 0/0:30,0:30:84.24:0,84,1066 0/0:31,0:31:90.27:0,90,1162 0/0:17,0:17:45.15:0,45,606 0/0:34,0:34:99:0,102,1349 0/0:29,0:29:87.26:0,87,1092 0/0:28,0:28:84.26:0,84,1048 0/0:24,0:24:69.18:0,69,855 0/0:29,0:29:87.26:0,87,1072 0/0:27,0:27:75.21:0,75,907 0/0:19,0:19:54.16:0,54,677 0/0:93,0:93:99:0,262,3182 0/0:10,0:10:30.09:0,30,375 0/0:22,1:23:63.19:0,63,775 0/0:26,0:26:75.21:0,75,896 0/0:50,0:50:99:0,138,1565 0/0:48,0:48:99:0,135,1692 0/0:34,0:34:93.27:0,93,1105 0/0:27,0:27:81.23:0,81,1009 0/0:56,0:56:99:0,165,2185 0/0:31,0:31:90.29:0,90,1194 0/0:31,0:31:93.30:0,93,1238 0/0:23,0:23:66.21:0,66,885 0/0:22,0:22:63.15:0,63,765 0/1:24,6:30:26.94:27,0,733 0/0:24,0:24:72.23:0,72,915 0/1:33,10:43:66.76:67,0,1000 0/0:24,0:24:72.21:0,72,889 0/0:47,0:47:99:0,129,1667 0/0:31,0:31:87.24:0,87,1048 0/0:21,0:21:60.19:0,60,757 0/0:36,0:36:99:0,102,1270 0/0:31,0:31:90.28:0,90,1128 0/0:47,0:47:99:0,129,1509 0/0:27,1:29:78.24:0,78,980 0/0:17,0:17:51.16:0,51,639 0/0:26,0:26:78.21:0,78,956 0/0:31,0:31:81.24:0,81,1017 0/0:31,0:31:90.27:0,90,1105 10 113921444 . AGCAGGC A 484.17 . AC=9;AF=0.107;AN=84;BaseQRankSum=13.489;DP=1391;FS=863.724;HRun=0;HaplotypeScore=181.5760;InbreedingCoeff=-0.1198;MQ=59.44;MQ0=0;MQRankSum=13.446;QD=1.67;ReadPosRankSum=-13.379 GT:AD:DP:GQ:PL 0/1:38,0:38:19.98:20,0,3205 0/0:27,0:27:47.29:0,47,2543 0/1:32,0:32:42.67:43,0,2763 0/0:58,0:58:99:0,175,6151 0/0:30,0:30:90.31:0,90,3276 0/0:31,0:31:90.31:0,90,3146 0/0:17,0:17:48.16:0,48,1651 0/0:34,0:34:99:0,102,3717 0/0:29,0:29:87.30:0,87,3203 0/0:27,0:27:81.27:0,81,2843 0/0:22,0:22:66.23:0,66,2386 0/0:31,0:31:93.30:0,93,3223 0/0:26,0:26:78.27:0,78,2880 0/0:18,0:18:51.17:0,51,1919 0/0:93,0:93:99:0,274,9730 0/0:9,0:9:27.09:0,27,939 0/1:26,0:25:45.34:45,0,2192 0/0:26,0:26:75.26:0,75,2797 0/0:49,0:49:99:0,144,4960 0/0:46,0:46:99:0,138,4951 0/0:35,0:35:99:0,102,3658 0/0:28,0:28:84.28:0,84,2971 0/0:57,0:57:99:0,172,6367 0/0:31,0:31:93.32:0,93,3394 0/0:30,0:30:90.31:0,90,3246 0/0:23,0:23:69.24:0,69,2491 0/0:22,0:22:63.22:0,63,2321 0/1:22,9:31:97.06:97,0,2024 0/1:28,0:28:24.99:25,0,2274 0/1:33,14:47:99:157,0,3295 0/0:23,0:23:69.23:0,69,2419 0/0:47,0:47:99:0,135,4731 0/0:28,0:28:84.29:0,84,2994 0/1:30,0:30:92.30:92,0,2007 0/0:35,0:35:99:0,105,3773 0/0:33,0:33:99:0,99,3571 0/0:51,0:50:99:0,103,4894 0/1:37,0:37:99:114,0,2773 0/1:21,0:21:27.77:28,0,1765 0/0:25,0:25:75.26:0,75,2619 0/0:30,0:30:90.31:0,90,3386 0/0:30,0:30:90.31:0,90,3364 10 113921445 . G A 28.21 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.264;DP=1391;Dels=0.02;FS=332.402;HRun=1;HaplotypeScore=2.3191;InbreedingCoeff=-0.0284;MQ=59.44;MQ0=0;MQRankSum=8.337;QD=0.42;ReadPosRankSum=-7.882 GT:AD:DP:GQ:PL 0/0:32,6:38:60.44:0,60,1051 0/0:27,0:27:75.23:0,75,939 0/0:27,5:32:42.59:0,43,927 0/0:58,0:58:99:0,175,2334 0/0:30,0:30:87.28:0,87,1166 0/0:31,0:31:90.29:0,90,1200 0/0:17,0:17:48.15:0,48,632 0/0:34,0:34:99:0,102,1363 0/0:29,0:29:87.28:0,87,1119 0/0:27,0:27:81.26:0,81,1027 0/0:22,0:22:63.20:0,63,806 0/0:31,0:31:93.29:0,93,1163 0/0:26,0:26:75.23:0,75,938 0/0:18,0:18:51.17:0,51,660 0/0:93,0:93:99:0,271,3335 0/0:9,0:9:27.09:0,27,341 0/0:21,5:26:31.80:0,32,726 0/0:26,0:26:75.24:0,75,948 0/0:48,1:49:99:0,103,1595 0/0:46,0:46:99:0,135,1719 0/0:35,0:35:99:0,99,1215 0/0:28,0:28:84.26:0,84,1055 0/0:57,0:57:99:0,172,2323 0/0:31,0:31:90.29:0,90,1216 0/0:30,0:30:90.30:0,90,1240 0/0:23,0:23:69.23:0,69,936 0/0:22,0:22:63.20:0,63,805 0/0:22,0:22:66.20:0,66,819 0/0:23,5:28:3.47:0,3,766 0/0:33,0:33:96.30:0,96,1205 0/0:23,0:23:69.22:0,69,881 0/0:47,0:47:99:0,135,1683 0/0:28,0:28:84.27:0,84,1063 0/1:22,8:30:41.29:41,0,666 0/0:35,0:35:99:0,105,1303 0/0:33,0:33:99:0,99,1268 0/0:48,3:51:71.96:0,72,1623 0/1:28,9:37:49.19:49,0,831 0/0:17,4:21:20.74:0,21,625 0/0:25,0:25:75.23:0,75,933 0/0:30,0:30:90.28:0,90,1138 0/0:30,0:30:90.29:0,90,1151 10 113921446 . C A 485.45 . AC=7;AF=0.083;AN=84;BaseQRankSum=-8.749;DP=1429;Dels=0.02;FS=612.305;HRun=1;HaplotypeScore=9.1032;InbreedingCoeff=-0.0909;MQ=59.64;MQ0=0;MQRankSum=11.278;QD=2.11;ReadPosRankSum=-10.489 GT:AD:DP:GQ:PL 0/1:32,11:43:74.35:74,0,875 0/0:27,0:27:75.19:0,75,894 0/1:26,9:35:45.96:46,0,831 0/0:55,0:55:99:0,166,2190 0/0:30,0:30:90.29:0,90,1190 0/0:31,1:32:90.27:0,90,1152 0/0:17,0:17:48.13:0,48,615 0/0:34,0:34:99:0,99,1299 0/0:29,0:29:84.26:0,84,1059 0/0:26,1:27:45.99:0,46,929 0/0:23,0:23:66.20:0,66,818 0/0:29,2:31:87.27:0,87,1084 0/0:26,1:27:75.20:0,75,911 0/0:18,0:18:51.16:0,51,644 0/0:94,1:96:99:0,242,3275 0/0:11,0:11:33.10:0,33,402 0/1:21,6:28:70.65:71,0,632 0/0:26,0:26:75.19:0,75,900 0/0:50,1:51:99:0,141,1696 0/0:46,0:46:99:0,135,1704 0/0:34,1:35:96.28:0,96,1178 0/0:27,0:27:78.22:0,78,967 0/0:57,0:57:99:0,172,2299 0/0:31,0:31:90.28:0,90,1188 0/0:30,1:31:87.29:0,87,1177 0/0:24,0:24:69.21:0,69,902 0/0:22,0:22:63.19:0,63,774 0/0:21,0:21:63.19:0,63,766 0/1:23,6:29:35.95:36,0,670 0/0:34,0:34:99:0,99,1214 0/0:24,1:25:66.20:0,66,816 0/0:48,1:49:99:0,135,1700 0/0:28,0:28:81.24:0,81,997 0/1:20,12:32:99:157,0,628 0/0:35,0:35:99:0,105,1302 0/0:33,0:33:99:0,99,1228 0/0:47,11:58:29.72:0,30,1434 0/1:27,13:40:99:140,0,850 0/1:17,6:23:75.85:76,0,574 0/0:25,0:25:66.18:0,66,818 0/0:30,0:30:90.26:0,90,1101 0/0:30,1:31:87.27:0,87,1092 10 113921447 . AGGC A 1273.04 . AC=17;AF=0.202;AN=84;BaseQRankSum=21.825;DP=1519;FS=2163.743;HRun=0;HaplotypeScore=143.1269;InbreedingCoeff=-0.2700;MQ=59.93;MQ0=0;MQRankSum=6.519;QD=2.05;ReadPosRankSum=-21.762 GT:AD:DP:GQ:PL 0/1:33,15:48:99:175,0,2197 0/0:28,0:28:15.12:0,15,1665 0/1:25,10:35:99:99,0,1743 0/1:61,0:61:22.15:22,0,3702 0/1:36,0:36:10.77:11,0,2083 0/0:34,0:34:10.67:0,11,2021 0/1:18,0:18:27.56:28,0,959 0/0:36,0:36:70.30:0,70,2462 0/0:31,0:31:56.17:0,56,2053 0/0:29,0:29:43.82:0,44,1924 0/0:25,0:25:31.32:0,31,1591 0/1:34,0:34:40.02:40,0,1999 0/0:27,0:27:44.13:0,44,1811 0/0:22,0:22:2.35:0,2,1266 0/0:96,0:96:99:0,177,6362 0/0:11,0:11:7.49:0,7,708 0/1:21,9:29:94.21:94,0,1394 0/0:27,0:27:75.26:0,75,1837 0/0:53,0:53:65.03:0,65,3294 0/0:50,0:50:34:0,34,3189 0/0:37,0:37:63.46:0,63,2419 0/1:32,0:32:19.45:19,0,1846 0/0:63,0:63:92.67:0,93,4176 0/0:32,0:32:68.81:0,69,2172 0/0:34,0:34:2.63:1,0,1986 0/0:26,0:26:59.18:0,59,1665 0/0:21,0:21:60.21:0,60,1480 0/1:27,0:27:99:109,0,1166 0/1:22,10:32:75.72:76,0,1536 0/1:45,0:45:99:166,0,2041 0/1:28,0:28:47.44:47,0,1609 0/0:50,0:50:27.74:0,28,2944 0/1:32,0:32:5.03:5,0,1822 0/1:20,15:35:99:176,0,1230 0/0:41,0:41:17.64:0,18,2364 0/0:33,0:33:78.88:0,79,2341 0/1:45,17:62:90.43:90,0,3006 0/1:25,17:42:99:196,0,1732 0/1:16,9:25:86.38:86,0,1094 0/0:25,0:25:38.21:0,38,1655 0/0:31,0:31:83.32:0,83,2206 0/0:35,0:35:28.31:0,28,2208 10 113921449 . G GA 168.29 . 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T C 2362.03 . 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C G 58298.30 . 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A G 15244.07 . AC=16;AF=0.190;AN=84;BaseQRankSum=-9.546;DP=3291;Dels=0.00;FS=9.019;HRun=0;HaplotypeScore=1.0845;InbreedingCoeff=-0.2353;MQ=59.41;MQ0=0;MQRankSum=1.733;QD=12.95;ReadPosRankSum=-4.212 GT:AD:DP:GQ:PL 0/0:65,0:65:99:0,172,2117 0/0:64,0:64:99:0,178,2155 0/0:59,0:59:99:0,156,1917 0/0:162,0:162:99:0,397,4950 0/0:138,0:138:99:0,337,4262 0/0:127,0:127:99:0,334,4222 0/0:90,0:90:99:0,232,2949 0/0:102,0:102:99:0,280,3430 0/1:39,29:68:99:711,0,1105 0/1:29,22:51:99:567,0,787 0/1:31,29:60:99:810,0,855 0/0:57,0:57:99:0,162,1962 0/1:24,37:61:99:994,0,656 0/1:26,21:47:99:559,0,711 0/1:103,115:219:99:2923,0,2643 0/1:28,18:46:99:487,0,808 0/1:29,21:50:99:563,0,849 0/1:34,37:71:99:1000,0,850 0/1:50,53:103:99:1329,0,1339 0/0:97,0:97:99:0,262,3192 0/0:82,0:82:99:0,202,2491 0/1:33,24:57:99:585,0,931 0/0:153,0:153:99:0,400,4951 0/0:114,0:114:99:0,289,3623 0/0:115,0:115:99:0,298,3702 0/0:94,0:94:99:0,244,3065 0/0:47,0:47:99:0,120,1487 0/0:61,0:62:99:0,171,2046 0/0:34,0:34:96.29:0,96,1160 0/0:60,0:60:99:0,156,1890 0/0:55,0:55:99:0,150,1835 0/1:46,37:83:99:1008,0,1308 0/0:54,0:54:99:0,135,1659 0/0:62,1:63:99:0,169,2060 0/0:56,0:57:99:0,135,1712 0/0:50,0:50:99:0,132,1629 0/1:45,43:88:99:1038,0,1214 0/0:55,0:55:99:0,153,1870 0/1:25,34:59:99:924,0,674 0/1:28,36:64:99:926,0,748 0/1:19,31:50:99:821,0,496 0/0:58,0:58:99:0,156,1907 10 115375528 . C A 13245.23 . AC=27;AF=0.321;AN=84;BaseQRankSum=12.466;DP=1786;Dels=0.00;FS=3.371;HRun=0;HaplotypeScore=0.9636;InbreedingCoeff=-0.1398;MQ=59.37;MQ0=0;MQRankSum=0.424;QD=14.23;ReadPosRankSum=1.807 GT:AD:DP:GQ:PL 0/0:23,0:23:66.17:0,66,733 0/0:43,0:43:99:0,117,1371 0/0:37,0:37:99:0,99,1108 0/1:39,17:56:99:465,0,1140 0/1:40,33:73:99:900,0,1095 1/1:2,46:48:99:1477,114,0 0/1:35,12:47:99:307,0,931 1/1:0,41:41:99:1368,105,0 0/0:35,0:35:99:0,102,1152 0/0:31,0:31:87.24:0,87,1017 0/1:23,14:37:99:417,0,593 1/1:0,27:27:69.22:878,69,0 0/1:10,12:22:99:378,0,218 0/1:16,17:33:99:526,0,410 0/0:137,0:138:99:0,337,4049 0/0:35,0:35:90.24:0,90,1047 0/0:33,0:34:90.23:0,90,1040 0/1:20,19:39:99:534,0,501 0/0:49,0:49:99:0,123,1473 0/1:24,16:40:99:393,0,679 0/1:29,17:46:99:437,0,686 0/1:17,10:27:99:250,0,405 0/0:85,0:85:99:0,217,2774 0/1:23,21:44:99:590,0,548 0/0:58,0:58:99:0,144,1831 0/1:29,19:48:99:438,0,778 0/1:14,8:22:99:218,0,349 0/1:20,24:44:99:688,0,516 0/1:15,16:31:99:447,0,407 0/0:32,0:32:84.20:0,84,988 0/1:18,13:31:99:366,0,505 0/0:48,0:49:99:0,123,1480 0/0:39,0:39:99:0,102,1179 0/1:14,16:30:99:502,0,356 0/0:31,0:31:78.20:0,78,892 0/1:18,26:44:99:767,0,441 0/0:46,0:46:99:0,126,1458 0/0:51,0:51:99:0,123,1460 0/0:39,0:39:99:0,114,1291 0/1:26,16:42:99:449,0,681 0/1:20,2:22:6.10:6,0,594 0/1:20,17:37:99:443,0,535 10 115377290 . T C 21477.30 . AC=10;AF=0.119;AN=84;BaseQRankSum=25.833;DP=5125;DS;Dels=0.00;FS=0.157;HRun=1;HaplotypeScore=1.4777;InbreedingCoeff=-0.1351;MQ=59.65;MQ0=0;MQRankSum=0.254;QD=14.95;ReadPosRankSum=0.552 GT:AD:DP:GQ:PL 0/0:97,0:97:99:0,262,3193 0/1:51,47:99:99:1229,0,1473 0/1:42,58:100:99:1702,0,1156 0/0:209,1:210:99:0,560,6942 0/1:92,104:196:99:3163,0,2557 0/0:186,0:186:99:0,497,6320 0/0:196,0:196:99:0,521,6572 0/0:174,1:175:99:0,475,5883 0/0:101,0:101:99:0,271,3265 0/0:82,0:82:99:0,217,2664 0/0:83,0:84:99:0,244,2932 0/0:82,0:82:99:0,235,2860 0/0:78,0:78:99:0,205,2464 0/0:89,0:89:99:0,247,2995 0/0:241,0:242:99:0,644,7784 0/0:74,0:75:99:0,205,2488 0/0:90,0:90:99:0,250,3047 0/0:110,0:110:99:0,304,3736 0/1:80,80:160:99:2236,0,2192 0/1:66,75:142:99:2157,0,1705 0/0:156,0:156:99:0,391,4862 0/0:82,0:83:99:0,223,2714 0/1:102,97:200:99:2989,0,2971 0/1:97,100:197:99:2937,0,2743 0/1:83,94:177:99:2789,0,2441 0/0:197,0:197:99:0,512,6451 0/0:60,0:60:99:0,169,2054 0/0:93,0:93:99:0,259,3190 0/1:35,41:77:99:1189,0,967 0/0:96,0:96:99:0,265,3228 0/0:83,0:83:99:0,235,2904 0/0:141,0:141:99:0,367,4539 0/0:90,0:90:99:0,244,2989 0/0:75,0:75:99:0,208,2528 0/0:109,0:109:99:0,307,3775 0/1:48,40:89:99:1087,0,1407 0/0:139,0:139:99:0,337,4224 0/0:80,0:80:99:0,223,2736 0/0:103,0:103:99:0,268,3349 0/0:98,0:98:99:0,265,3256 0/0:82,0:82:99:0,223,2688 0/0:105,0:106:99:0,292,3532 10 115400044 . T G 8970.98 . 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A G 212.89 . AC=6;AF=0.071;AN=84;BaseQRankSum=-26.433;DP=4760;DS;Dels=0.00;FS=3200.000;HRun=1;HaplotypeScore=1.8985;InbreedingCoeff=-0.0900;MQ=59.22;MQ0=0;MQRankSum=1.466;QD=0.45;ReadPosRankSum=-30.622 GT:AD:DP:GQ:PL 0/0:68,15:83:45.96:0,46,2381 0/0:74,24:98:67.20:0,67,2332 0/0:75,20:95:47.39:0,47,2379 0/0:156,52:208:99:0,159,5294 0/0:156,40:196:99:0,148,5502 0/0:154,29:183:99:0,338,5731 0/0:148,35:183:99:0,242,5278 0/0:148,48:196:99:0,168,5186 0/0:71,12:83:94.44:0,94,2351 0/0:70,19:89:79.83:0,80,2221 0/0:50,20:70:49.83:0,50,1625 0/1:65,20:85:75.84:76,0,2169 0/1:55,19:75:55.29:55,0,1663 0/0:76,16:92:9.72:0,10,2445 0/0:134,28:162:70.47:0,70,4093 0/0:55,13:69:15.07:0,15,1752 0/0:81,19:100:99:0,142,2752 0/1:61,18:80:21.76:22,0,1959 0/0:95,18:113:99:0,119,3144 0/0:106,18:124:99:0,260,3579 0/0:105,32:137:99:0,179,3492 0/0:60,8:68:99:0,163,2013 0/0:157,34:193:99:0,281,5692 0/0:167,36:203:99:0,407,6061 0/0:156,40:197:99:0,175,5447 0/0:154,46:200:99:0,330,5495 0/0:42,12:54:9.07:0,9,1333 0/0:70,18:88:99:0,124,2457 0/1:52,14:66:34.07:34,0,1642 0/1:65,22:87:56.16:56,0,1923 0/0:68,12:80:99:0,133,2438 0/0:90,16:106:99:0,239,3239 0/0:77,17:94:99:0,186,2671 0/0:62,14:76:32.94:0,33,2021 0/0:56,17:73:23.40:0,23,1763 0/1:60,22:82:73.82:74,0,2061 0/0:97,19:116:99:0,197,3128 0/0:67,18:85:80:0,80,2182 0/0:65,23:88:1.53:4,0,2030 0/0:81,19:100:99:0,111,2692 0/0:64,17:81:99:0,149,2169 0/0:79,23:102:99:0,107,2611 10 115400076 . A G 1616.51 . 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T A 30050.13 . AC=15;AF=0.179;AN=84;BaseQRankSum=-23.398;DP=5634;DS;Dels=0.00;FS=0.781;HRun=0;HaplotypeScore=2.3532;InbreedingCoeff=-0.2174;MQ=59.34;MQ0=0;MQRankSum=0.967;QD=14.57;ReadPosRankSum=0.965 GT:AD:DP:GQ:PL 0/1:57,57:114:99:1617,0,1704 0/1:51,60:111:99:1735,0,1533 0/0:106,0:106:99:0,298,3719 0/0:241,0:241:99:0,665,8520 0/0:198,0:198:99:0,554,7145 0/1:105,102:207:99:3026,0,3093 0/0:200,0:200:99:0,542,7112 0/1:85,93:178:99:2806,0,2537 0/0:104,0:104:99:0,283,3534 0/0:73,0:73:99:0,205,2558 0/0:107,0:107:99:0,313,3885 0/0:111,0:111:99:0,307,3864 0/0:101,0:101:99:0,277,3431 0/0:101,0:101:99:0,295,3663 0/0:248,0:248:99:0,701,8718 0/1:32,43:75:99:1324,0,900 0/0:105,0:105:99:0,298,3697 0/0:94,1:95:99:0,233,3315 0/0:180,0:181:99:0,491,6198 0/0:188,0:188:99:0,500,6267 0/1:87,85:172:99:2259,0,2435 0/0:99,0:99:99:0,289,3609 0/0:237,1:238:99:0,665,8603 0/1:82,87:169:99:2496,0,2529 0/1:105,93:198:99:2594,0,3342 0/1:97,98:195:99:2782,0,2846 0/0:67,0:67:99:0,190,2380 0/0:91,0:91:99:0,265,3266 0/0:79,0:79:99:0,223,2776 0/1:44,57:101:99:1681,0,1304 0/1:42,52:94:99:1474,0,1248 0/1:90,73:163:99:2114,0,2652 0/0:104,0:104:99:0,295,3696 0/0:108,0:108:99:0,322,3996 0/0:119,2:121:99:0,275,4202 0/0:116,0:116:99:0,331,4152 0/0:158,0:158:99:0,427,5403 0/0:118,1:119:99:0,293,4075 0/0:112,0:112:99:0,325,4070 0/1:51,45:96:99:1292,0,1565 0/1:40,54:94:99:1567,0,1111 0/1:50,46:96:99:1282,0,1581 10 115534690 . A G 1724.83 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.032;DP=3126;DS;Dels=0.00;FS=11.643;HRun=2;HaplotypeScore=1.4427;InbreedingCoeff=-0.0120;MQ=59.48;MQ0=0;MQRankSum=-0.512;QD=14.02;ReadPosRankSum=0.949 GT:AD:DP:GQ:PL 0/0:63,0:63:99:0,178,2172 0/0:63,0:63:99:0,184,2248 0/0:60,0:60:99:0,172,2046 0/0:114,0:114:99:0,331,4039 0/0:105,0:105:99:0,304,3753 0/0:82,0:82:99:0,241,2992 0/0:85,0:85:99:0,241,3024 0/0:94,0:94:99:0,277,3441 0/0:54,0:54:99:0,147,1798 0/0:52,0:52:99:0,147,1814 0/0:62,0:62:99:0,172,2104 0/0:53,0:53:99:0,159,1923 0/0:55,0:55:99:0,159,1933 0/0:45,0:45:99:0,129,1569 0/0:182,0:182:99:0,506,6151 0/0:51,0:51:99:0,141,1726 0/0:44,0:44:99:0,126,1554 0/0:66,0:66:99:0,184,2213 0/0:94,1:95:99:0,268,3276 0/1:57,65:123:99:1771,0,1567 0/0:119,0:119:99:0,331,4089 0/0:63,0:63:99:0,181,2204 0/0:101,1:102:99:0,289,3584 0/0:73,0:73:99:0,208,2586 0/0:78,0:78:99:0,232,2896 0/0:60,0:60:99:0,175,2164 0/0:42,0:42:99:0,117,1431 0/0:57,0:57:99:0,159,1947 0/0:58,0:58:99:0,175,2106 0/0:57,0:57:99:0,165,1967 0/0:56,0:56:99:0,169,2053 0/0:103,0:103:99:0,289,3544 0/0:93,2:95:99:0,268,3219 0/0:58,0:58:99:0,162,1985 0/0:61,0:61:99:0,172,2085 0/0:53,1:54:99:0,153,1853 0/0:116,0:116:99:0,319,3915 0/0:68,0:68:99:0,196,2372 0/0:80,0:80:99:0,229,2812 0/0:63,0:63:99:0,165,2018 0/0:49,0:49:99:0,147,1774 0/0:66,0:66:99:0,187,2285 10 115534709 . T C 320.24 . AC=7;AF=0.083;AN=84;BaseQRankSum=-19.664;DP=3412;Dels=0.00;FS=527.969;HRun=4;HaplotypeScore=1.8233;InbreedingCoeff=-0.0976;MQ=59.17;MQ0=0;MQRankSum=-1.828;QD=0.42;ReadPosRankSum=-11.589 GT:AD:DP:GQ:PL 0/0:42,26:68:8.67:0,9,1100 0/0:54,10:64:99:0,116,1566 0/0:48,14:62:3.29:0,3,1219 0/0:86,33:119:99:0,108,2359 0/0:85,22:107:99:0,155,2645 0/0:56,14:70:99:0,113,1799 0/0:75,11:86:99:0,202,2460 0/0:67,22:89:99:0,105,1840 0/1:45,19:64:17.19:17,0,1189 0/0:40,28:68:8.46:0,8,1146 0/0:54,14:68:86.96:0,87,1441 0/0:53,20:74:82.87:0,83,1480 0/0:46,17:63:78.15:0,78,1385 0/0:38,17:56:29.38:0,29,959 0/1:135,86:223:71.27:71,0,3218 0/1:48,23:72:10.68:11,0,1027 0/0:35,18:53:23.26:0,23,884 0/0:52,32:84:98.61:0,99,1310 0/1:70,44:114:24.61:25,0,2148 0/0:89,21:110:99:0,175,2204 0/1:67,47:114:99:168,0,1695 0/0:54,15:69:75.09:0,75,1368 0/0:76,30:106:99:0,115,2297 0/0:53,14:67:99:0,126,1474 0/0:65,13:78:99:0,141,2008 0/0:55,24:79:99:0,100,1704 0/1:31,19:50:39.78:40,0,732 0/0:41,17:58:51.92:0,52,1071 0/0:40,15:57:54.99:0,55,1161 0/0:48,19:67:87.80:0,88,1312 0/0:47,20:67:99:0,117,1328 0/0:91,30:121:99:0,105,2288 0/0:62,21:83:99:0,116,1594 0/0:47,16:64:85.74:0,86,1289 0/0:45,17:63:30.52:0,31,1165 0/0:39,23:62:44.52:0,45,991 0/1:80,53:133:99:99,0,2074 0/0:46,18:65:99:0,117,1335 0/0:63,23:86:99:0,129,1825 0/0:56,20:76:86.71:0,87,1276 0/0:42,19:61:68.04:0,68,1272 0/0:50,22:72:26.82:0,27,1267 10 115639395 . G T 3096.12 . AC=36;AF=0.429;AN=84;BaseQRankSum=-17.540;DP=1543;Dels=0.00;FS=1210.954;HRun=1;HaplotypeScore=1.5761;InbreedingCoeff=-0.7443;MQ=58.90;MQ0=0;MQRankSum=-1.369;QD=2.35;ReadPosRankSum=-15.335 GT:AD:DP:GQ:PL 0/1:23,5:28:1.87:2,0,610 0/1:20,13:33:45.01:45,0,547 0/1:26,7:33:17.65:18,0,680 0/1:22,22:44:99:222,0,566 0/1:30,22:52:99:233,0,930 0/0:44,10:54:10.05:0,10,1136 0/0:32,12:44:25.24:0,25,854 0/1:22,13:35:23.73:24,0,628 0/1:19,10:29:99:137,0,430 0/1:22,6:28:90.14:90,0,617 0/1:20,10:30:32.19:32,0,588 0/1:18,10:28:99:156,0,464 0/1:27,12:39:54.87:55,0,632 0/0:23,6:29:9.82:0,10,688 0/1:62,36:98:99:251,0,1592 0/1:19,5:24:38.10:38,0,576 0/1:22,14:36:99:117,0,682 0/1:20,12:32:37.58:38,0,538 0/1:29,10:39:57.94:58,0,831 0/1:35,20:55:99:163,0,865 0/1:21,13:34:21.09:21,0,611 0/1:13,16:30:49.27:49,0,435 0/1:34,18:52:99:224,0,987 0/1:29,16:45:99:158,0,796 0/1:31,19:50:33.81:34,0,810 0/1:30,17:47:99:155,0,695 0/1:15,8:23:78.55:79,0,394 0/0:25,2:27:3.54:0,4,772 0/1:13,12:25:18.47:18,0,362 0/1:17,12:29:99:179,0,445 0/1:13,9:22:47.77:48,0,312 0/1:36,19:55:99:164,0,878 0/0:26,9:35:27.35:0,27,593 0/0:30,7:37:24.83:0,25,810 0/1:16,9:25:99:121,0,534 0/1:22,12:34:37.69:38,0,495 0/1:27,15:42:37.77:38,0,794 0/1:17,6:23:5.61:6,0,539 0/1:15,9:24:91.29:91,0,277 0/1:18,13:31:74.98:75,0,468 0/1:27,11:38:33.30:33,0,654 0/1:16,9:25:57.13:57,0,339 10 115644040 . G A 38997.34 . AC=28;AF=0.333;AN=84;BaseQRankSum=-40.342;DP=4037;DS;Dels=0.00;FS=4.154;HRun=0;HaplotypeScore=1.4457;InbreedingCoeff=0.0357;MQ=59.50;MQ0=0;MQRankSum=-0.377;QD=17.20;ReadPosRankSum=-0.604 GT:AD:DP:GQ:PL 0/0:68,0:68:99:0,184,2321 0/0:75,0:75:99:0,205,2624 0/0:73,0:73:99:0,199,2498 0/1:87,80:167:99:2021,0,2500 0/1:88,63:151:99:1585,0,2745 0/0:146,0:146:99:0,376,5160 0/0:138,0:138:99:0,358,4927 0/0:133,0:133:99:0,346,4650 0/1:47,39:86:99:985,0,1420 0/0:71,0:71:99:0,184,2347 0/1:31,34:65:99:915,0,935 0/0:85,0:85:99:0,229,2885 0/1:30,35:65:99:955,0,841 0/0:74,0:74:99:0,190,2458 1/1:0,242:243:99:7575,623,0 1/1:0,56:56:99:1799,147,0 1/1:0,78:78:99:2579,217,0 1/1:0,71:71:99:2427,205,0 1/1:0,99:99:99:3278,271,0 0/1:63,42:105:99:1087,0,1759 0/1:61,51:112:99:1402,0,1753 0/0:76,0:76:99:0,211,2637 0/1:99,77:177:99:1946,0,2978 0/0:149,0:149:99:0,394,5449 0/0:128,0:128:99:0,355,4833 0/1:63,71:134:99:1948,0,1850 0/1:31,23:54:99:660,0,953 0/0:74,0:74:99:0,208,2626 0/1:23,27:50:99:754,0,662 0/1:41,36:77:99:975,0,1199 0/1:31,35:66:99:991,0,833 0/1:64,46:110:99:1247,0,1785 0/0:77,0:77:99:0,187,2403 0/0:80,0:80:99:0,217,2739 0/1:30,24:54:99:598,0,902 0/1:43,39:82:99:1092,0,1240 0/1:48,44:92:99:1122,0,1347 0/1:35,38:73:99:1056,0,954 0/0:87,0:87:99:0,232,2962 0/0:91,0:91:99:0,250,3183 0/0:59,2:61:99:0,105,2068 0/0:84,0:84:99:0,232,2937 10 115663348 . T C 5178.32 . AC=2;AF=0.024;AN=84;BaseQRankSum=13.897;DP=8870;DS;Dels=0.00;FS=0.302;HRun=0;HaplotypeScore=3.1224;InbreedingCoeff=-0.0244;MQ=59.69;MQ0=0;MQRankSum=-0.307;QD=14.51;ReadPosRankSum=-0.471 GT:AD:DP:GQ:PL 0/0:179,0:179:99:0,502,5983 0/1:90,98:188:99:2850,0,2525 0/1:88,80:169:99:2328,0,2297 0/0:250,0:250:99:0,686,8258 0/0:250,0:250:99:0,701,8523 0/0:250,0:250:99:0,668,8430 0/0:250,0:250:99:0,683,8498 0/0:249,0:249:99:0,686,8373 0/0:192,0:192:99:0,524,6240 0/0:176,0:176:99:0,475,5702 0/0:195,0:195:99:0,530,6367 0/0:186,0:186:99:0,493,5994 0/0:167,0:167:99:0,436,5324 0/0:193,0:193:99:0,515,6216 0/0:250,0:250:99:0,710,8289 0/0:123,0:124:99:0,328,3945 0/0:200,0:200:99:0,557,6667 0/0:211,0:211:99:0,581,6961 0/0:250,0:250:99:0,656,7912 0/0:249,0:250:99:0,686,8298 0/0:245,0:245:99:0,635,7722 0/0:204,0:205:99:0,505,6182 0/0:250,0:250:99:0,692,8378 0/0:250,0:250:99:0,680,8349 0/0:250,0:250:99:0,683,8400 0/0:239,0:240:99:0,662,8045 0/0:152,0:152:99:0,412,4932 0/0:214,0:214:99:0,581,6986 0/0:194,0:194:99:0,554,6575 0/0:194,0:194:99:0,530,6346 0/0:177,0:177:99:0,502,5964 0/0:250,0:250:99:0,701,8439 0/0:225,0:225:99:0,608,7271 0/0:214,0:214:99:0,590,7149 0/0:214,0:214:99:0,575,6956 0/0:225,1:226:99:0,593,7211 0/0:250,0:250:99:0,677,8158 0/0:200,0:201:99:0,551,6588 0/0:192,0:192:99:0,521,6228 0/0:221,0:221:99:0,593,7194 0/0:161,0:161:99:0,430,5197 0/0:166,0:166:99:0,478,5674 10 115663471 . T C 1886.32 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.390;DP=6412;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.4757;InbreedingCoeff=-0.0120;MQ=59.62;MQ0=0;MQRankSum=-0.581;QD=15.09;ReadPosRankSum=0.433 GT:AD:DP:GQ:PL 0/0:132,0:132:99:0,376,4707 0/0:144,0:144:99:0,409,5063 0/0:132,0:132:99:0,385,4779 0/0:173,0:173:99:0,506,6454 0/0:188,0:188:99:0,542,7032 0/0:212,0:212:99:0,602,7896 0/0:191,0:191:99:0,542,7081 0/0:211,0:211:99:0,599,7739 0/0:115,0:115:99:0,331,4106 0/0:113,0:113:99:0,331,4081 0/0:130,0:130:99:0,382,4713 0/0:119,0:119:99:0,334,4162 0/0:105,0:105:99:0,295,3675 0/0:148,0:148:99:0,421,5269 0/0:217,0:217:99:0,629,7804 0/0:85,0:85:99:0,241,2936 0/0:127,0:127:99:0,367,4570 0/0:158,0:158:99:0,451,5598 0/0:216,0:217:99:0,623,7812 0/0:193,0:193:99:0,554,6946 0/0:193,0:193:99:0,542,6779 0/0:116,0:116:99:0,334,4121 0/0:192,0:192:99:0,554,7151 0/0:192,0:192:99:0,539,6976 0/0:204,0:204:99:0,575,7488 0/0:207,0:207:99:0,569,7404 0/0:85,0:85:99:0,244,3028 0/0:128,0:128:99:0,358,4483 0/0:114,1:115:99:0,308,4059 0/0:130,0:130:99:0,379,4693 0/0:120,0:120:99:0,352,4310 0/0:218,0:218:99:0,620,7738 0/1:64,61:125:99:1933,0,2010 0/0:152,0:153:99:0,436,5435 0/0:131,0:131:99:0,382,4714 0/0:155,0:155:99:0,445,5499 0/0:165,0:165:99:0,472,5878 0/0:125,0:126:99:0,358,4441 0/0:152,0:152:99:0,427,5359 0/0:141,0:141:99:0,412,5121 0/0:135,0:135:99:0,361,4574 0/0:118,0:118:99:0,343,4286 10 115966046 . G T 13.32 . 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G A 1506.37 . 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G C 1355.75 . 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G A 1041.16 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.803;DP=2829;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.0016;InbreedingCoeff=-0.0244;MQ=58.63;MQ0=0;MQRankSum=1.753;QD=12.39;ReadPosRankSum=-0.487 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,120,1394 0/0:56,0:56:99:0,162,1849 0/0:48,0:48:99:0,129,1528 0/0:144,0:144:99:0,388,4762 0/0:135,0:135:99:0,370,4608 0/0:105,1:106:99:0,261,3540 0/0:77,0:77:99:0,220,2694 0/0:113,0:113:99:0,295,3726 0/0:47,0:47:99:0,138,1595 0/0:44,0:44:99:0,123,1429 0/0:46,0:46:99:0,132,1530 0/1:23,18:42:99:480,0,645 0/1:20,22:42:99:624,0,507 0/0:50,0:50:99:0,135,1575 0/0:148,0:148:99:0,385,4570 0/0:62,0:62:99:0,180,2088 0/0:50,0:50:99:0,141,1610 0/0:42,0:42:99:0,126,1453 0/0:82,0:82:99:0,211,2422 0/0:64,0:64:99:0,177,2043 0/0:66,0:66:99:0,180,2065 0/0:56,0:56:99:0,159,1876 0/0:141,0:141:99:0,391,4871 0/0:72,0:72:99:0,193,2423 0/0:96,0:96:99:0,265,3345 0/0:90,0:90:99:0,247,3032 0/0:55,0:55:99:0,147,1763 0/0:47,0:47:99:0,135,1521 0/0:36,0:36:96.26:0,96,1090 0/0:57,0:57:99:0,168,1936 0/0:45,0:45:99:0,132,1487 0/0:81,0:81:99:0,205,2424 0/0:62,0:62:99:0,162,1906 0/0:49,0:49:99:0,135,1524 0/0:50,0:50:99:0,129,1524 0/0:49,0:49:99:0,138,1645 0/0:84,0:85:99:0,226,2613 0/0:44,0:44:99:0,126,1440 0/0:50,0:51:99:0,138,1626 0/0:59,0:59:99:0,162,1819 0/0:46,0:47:99:0,126,1453 0/0:47,0:48:99:0,138,1636 10 116059095 . C T 402.98 . 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T C 72434.96 . 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G C 1779.73 . AC=3;AF=0.036;AN=84;BaseQRankSum=-0.599;DP=2772;Dels=0.00;FS=1.577;HRun=0;HaplotypeScore=1.3846;InbreedingCoeff=-0.0370;MQ=59.25;MQ0=0;MQRankSum=0.642;QD=14.12;ReadPosRankSum=-0.537 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,114,1429 0/0:42,0:42:99:0,105,1316 0/0:33,0:33:87.27:0,87,1095 0/0:163,0:163:99:0,421,5608 0/0:118,0:118:99:0,313,4131 0/0:106,0:106:99:0,277,3737 0/0:79,0:79:99:0,205,2744 0/0:106,0:106:99:0,271,3558 0/1:21,25:46:99:782,0,601 0/0:54,0:54:99:0,153,1886 0/1:23,22:45:99:679,0,679 0/0:42,0:42:99:0,108,1375 0/0:52,0:52:99:0,132,1611 0/0:48,0:48:99:0,123,1527 0/0:154,0:154:99:0,376,4687 0/0:42,0:42:99:0,114,1373 0/0:55,0:55:99:0,156,1889 0/0:42,0:42:99:0,123,1519 0/0:58,0:58:99:0,153,1870 0/0:89,0:89:99:0,232,2923 0/0:68,0:68:99:0,174,2107 0/0:66,0:66:99:0,187,2286 0/0:179,0:179:99:0,442,5961 0/0:69,0:69:99:0,187,2469 0/0:91,0:92:99:0,238,3167 0/0:80,0:80:99:0,208,2747 0/0:37,0:37:93.28:0,93,1145 0/0:40,0:40:99:0,111,1375 0/0:42,0:42:99:0,120,1435 0/0:39,0:39:99:0,105,1291 0/0:39,0:39:99:0,108,1350 0/0:104,0:104:99:0,259,3318 0/0:56,0:56:99:0,150,1875 0/0:38,0:38:99:0,105,1298 0/0:55,0:55:99:0,141,1768 0/0:48,0:48:99:0,138,1681 0/0:74,0:75:99:0,187,2277 0/0:47,0:47:99:0,123,1510 0/0:38,0:38:99:0,108,1341 0/0:64,0:64:99:0,169,2100 0/1:21,14:35:99:394,0,632 0/0:43,0:43:99:0,120,1487 10 116073696 . C T 61997.45 . 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T C 8769.79 . 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T C 77.59 . 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C A 4.58 . 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T C 16091.85 . 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A AG 111795.28 . AC=84;AF=1.000;AN=84;BaseQRankSum=-1.657;DP=2616;FS=0.000;HRun=1;HaplotypeScore=128.3377;InbreedingCoeff=-0.0000;MQ=60.43;MQ0=0;MQRankSum=1.681;QD=42.74;ReadPosRankSum=1.574 GT:AD:DP:GQ:PL 1/1:3,50:53:99:2228,154,0 1/1:1,38:40:99:1728,117,0 1/1:0,62:63:99:2777,190,0 1/1:1,96:97:99:4310,289,0 1/1:4,81:85:99:3607,247,0 1/1:4,56:60:99:2519,169,0 1/1:0,54:55:99:2458,166,0 1/1:1,82:84:99:3697,250,0 1/1:0,31:31:93.31:1382,93,0 1/1:1,33:34:99:1484,99,0 1/1:1,40:41:99:1795,120,0 1/1:3,49:52:99:2117,144,0 1/1:1,44:45:99:1920,132,0 1/1:3,46:49:99:2048,138,0 1/1:6,168:174:99:7335,503,0 1/1:1,41:42:99:1784,123,0 1/1:0,47:47:99:2073,141,0 1/1:3,53:56:99:2408,166,0 1/1:6,97:103:99:4303,291,0 1/1:3,93:96:99:4085,277,0 1/1:2,84:87:99:3679,250,0 1/1:2,48:50:99:2154,144,0 1/1:0,96:96:99:4292,289,0 1/1:1,59:59:99:2592,175,0 1/1:1,57:58:99:2560,172,0 1/1:1,58:59:99:2577,175,0 1/1:2,39:41:99:1681,117,0 1/1:5,51:53:99:2183,150,0 1/1:2,41:43:99:1829,123,0 1/1:4,53:57:99:2314,157,0 1/1:2,40:42:99:1757,120,0 1/1:1,107:108:99:4746,322,0 1/1:3,73:76:99:3190,217,0 1/1:2,41:43:99:1828,123,0 1/1:2,38:40:99:1646,111,0 1/1:0,60:60:99:2604,178,0 1/1:5,82:87:99:3582,244,0 1/1:1,54:55:99:2384,160,0 1/1:2,41:44:99:1786,123,0 1/1:2,53:55:99:2414,163,0 1/1:1,44:45:99:1977,135,0 1/1:3,44:47:99:1962,135,0 10 118383557 . G C 734.95 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.040;DP=4086;DS;Dels=0.00;FS=0.726;HRun=0;HaplotypeScore=2.0319;InbreedingCoeff=-0.0120;MQ=59.20;MQ0=0;MQRankSum=-0.292;QD=12.46;ReadPosRankSum=-0.154 GT:AD:DP:GQ:PL 0/0:74,0:74:99:0,211,2652 0/0:72,0:72:99:0,193,2446 0/0:87,0:87:99:0,244,3020 0/0:131,1:134:99:0,361,4839 0/0:118,0:118:99:0,304,4131 0/0:121,0:121:99:0,319,4263 0/0:97,0:97:99:0,247,3316 0/0:123,0:123:99:0,331,4397 0/0:80,0:80:99:0,211,2673 0/0:62,0:62:99:0,172,2156 0/0:80,0:80:99:0,214,2753 0/0:82,0:82:99:0,220,2798 0/0:58,0:58:99:0,150,1919 0/0:92,0:92:99:0,250,3113 0/0:249,0:250:99:0,650,8236 0/1:33,26:59:99:781,0,1001 0/0:72,0:72:99:0,199,2520 0/0:80,0:80:99:0,226,2815 0/0:172,0:173:99:0,445,5570 0/0:152,0:152:99:0,409,5177 0/0:165,0:165:99:0,409,5204 0/0:97,0:97:99:0,268,3433 0/0:151,0:151:99:0,400,5371 0/0:90,0:90:99:0,232,3116 0/0:87,0:87:99:0,229,3109 0/0:83,0:83:99:0,226,3061 0/0:50,0:50:99:0,135,1706 0/0:73,0:73:99:0,202,2527 0/0:55,0:55:99:0,147,1898 0/0:58,0:58:99:0,162,2051 0/0:74,0:74:99:0,208,2632 0/0:156,0:156:99:0,412,5246 0/0:113,0:113:99:0,313,3995 0/0:82,0:82:99:0,226,2853 0/0:76,0:76:99:0,208,2592 0/0:74,0:74:99:0,205,2579 0/0:150,0:150:99:0,388,4815 0/0:83,0:83:99:0,211,2658 0/0:68,0:68:99:0,196,2437 0/0:91,0:91:99:0,253,3229 0/0:64,0:64:99:0,178,2214 0/0:80,0:80:99:0,226,2869 10 118440736 . A C 174.97 . AC=8;AF=0.095;AN=84;BaseQRankSum=-15.824;DP=2343;Dels=0.00;FS=1016.471;HRun=2;HaplotypeScore=1.6942;InbreedingCoeff=-0.1338;MQ=58.86;MQ0=0;MQRankSum=0.463;QD=0.45;ReadPosRankSum=-16.551 GT:AD:DP:GQ:PL 0/0:31,11:42:6.64:0,7,938 0/0:48,18:66:99:0,126,1497 0/0:28,12:40:46.67:0,47,847 0/0:52,40:93:90.18:0,90,1660 0/0:32,36:68:43.20:0,43,1045 0/0:37,34:72:1.16:5,0,1123 0/1:29,22:52:32.05:32,0,848 0/0:24,29:53:68.85:0,69,791 0/1:33,18:51:56.19:56,0,1036 0/0:23,18:41:19.87:0,20,712 0/0:18,17:35:1.28:5,0,476 0/0:37,20:57:51.21:0,51,1193 0/0:27,13:40:19.71:0,20,821 0/1:32,24:56:26.21:26,0,839 0/0:95,40:135:99:0,221,2848 0/0:27,12:39:20.94:0,21,794 0/0:21,14:35:31.61:0,32,672 0/1:27,23:50:5.78:6,0,755 0/0:34,10:44:34.12:0,34,1013 0/0:65,26:91:99:0,147,1983 0/0:41,13:54:34.67:0,35,1067 0/0:33,18:51:63.29:0,63,984 0/0:53,34:87:50.93:0,51,1675 0/0:25,27:52:51.38:0,51,796 0/0:42,37:79:92.90:0,93,1367 0/0:30,23:53:83.08:0,83,919 0/1:27,11:38:9.18:9,0,716 0/0:29,19:48:6.45:0,6,881 0/1:25,22:47:41.45:41,0,685 0/0:39,20:59:6.94:0,7,1231 0/0:29,14:43:42.68:0,43,796 0/0:48,29:77:62.79:0,63,1576 0/0:35,12:47:68.84:0,69,1106 0/1:27,17:44:95.61:96,0,789 0/0:46,18:64:26.06:0,26,1352 0/0:32,16:48:63.15:0,63,1070 0/0:36,12:48:70.63:0,71,1113 0/0:28,22:50:6.81:0,7,704 0/0:32,12:44:30.57:0,31,997 0/0:40,16:56:28.86:0,29,1282 0/0:27,15:42:45.83:0,46,827 0/1:35,17:52:18.55:19,0,1017 10 120828969 . A G 45141.81 . AC=79;AF=0.940;AN=84;BaseQRankSum=-9.708;DP=1495;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3576;InbreedingCoeff=-0.0633;MQ=59.24;MQ0=0;MQRankSum=1.323;QD=30.20;ReadPosRankSum=-0.363 GT:AD:DP:GQ:PL 0/1:19,15:34:99:391,0,519 0/1:18,17:35:99:432,0,565 1/1:0,29:29:84.22:919,84,0 1/1:0,53:53:99:1827,150,0 1/1:0,55:55:99:1861,153,0 1/1:0,55:55:99:1904,156,0 1/1:0,54:54:99:1906,162,0 1/1:0,32:32:93.28:1107,93,0 1/1:0,26:26:78.18:825,78,0 1/1:0,33:33:90.22:983,90,0 1/1:0,32:32:96.26:1057,96,0 1/1:0,27:27:78.20:862,78,0 1/1:0,27:28:75.19:823,75,0 0/1:15,14:29:99:375,0,461 1/1:0,105:105:99:3151,283,0 1/1:0,22:22:63.16:701,63,0 1/1:0,37:37:99:1121,99,0 1/1:0,28:28:81.20:896,81,0 1/1:0,39:39:96.26:1105,96,0 1/1:0,33:33:93.24:1032,93,0 1/1:0,32:32:93.24:1013,93,0 1/1:0,24:24:72.19:785,72,0 1/1:0,52:52:99:1816,150,0 1/1:0,45:45:99:1545,126,0 1/1:1,54:55:99:1842,133,0 1/1:0,36:36:99:1266,105,0 1/1:0,18:19:48.13:548,48,0 1/1:0,39:39:99:1159,105,0 1/1:0,42:42:99:1323,123,0 1/1:0,28:28:84.20:900,84,0 1/1:0,18:18:54.14:591,54,0 1/1:0,29:29:75.20:865,75,0 1/1:0,23:23:63.16:699,63,0 0/1:15,10:25:99:260,0,431 0/1:11,10:21:99:265,0,339 1/1:0,28:28:75.20:859,75,0 1/1:0,29:29:84.20:915,84,0 1/1:0,34:34:96.26:1076,96,0 1/1:0,36:36:99:1174,108,0 1/1:0,39:39:99:1165,102,0 1/1:0,30:30:90.22:963,90,0 1/1:0,25:25:75.21:836,75,0 10 120933324 . G A 147325.40 . AC=84;AF=1.000;AN=84;BaseQRankSum=1.729;DP=4345;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.2835;InbreedingCoeff=0.0000;MQ=59.27;MQ0=1;MQRankSum=-1.407;QD=33.91;ReadPosRankSum=-0.479 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3802,316,0 1/1:0,86:86:99:2868,238,0 1/1:0,77:77:99:2597,217,0 1/1:0,172:172:99:5687,466,0 1/1:0,106:106:99:3735,307,0 1/1:1,145:146:99:5158,409,0 1/1:0,143:143:99:4977,400,0 1/1:0,127:127:99:4397,358,0 1/1:0,93:93:99:3074,256,0 1/1:0,73:73:99:2478,208,0 1/1:0,87:87:99:3014,253,0 1/1:0,79:79:99:2622,217,0 1/1:0,69:69:99:2364,196,0 1/1:0,97:97:99:3408,283,0 1/1:0,250:250:99:8104,671,0 1/1:0,70:70:99:2377,199,0 1/1:0,94:94:99:3090,253,0 1/1:0,75:75:99:2604,220,0 1/1:0,126:126:99:4200,346,0 1/1:0,125:125:99:4206,343,0 1/1:0,123:123:99:4068,334,0 1/1:0,67:67:99:2243,187,0 1/1:0,149:149:99:5062,415,0 1/1:0,127:127:99:4412,355,0 1/1:0,127:127:99:4260,343,0 1/1:0,115:116:99:3969,325,0 1/1:0,69:69:99:2325,190,0 1/1:0,91:91:99:3068,253,0 1/1:0,90:90:99:3072,253,0 1/1:0,94:94:99:3265,271,0 1/1:0,70:70:99:2451,205,0 1/1:0,95:95:99:3177,256,0 1/1:0,79:79:99:2586,214,0 1/1:0,90:90:99:3050,250,0 1/1:0,82:82:99:2877,238,0 1/1:0,92:92:99:3217,268,0 1/1:0,121:121:99:4041,328,0 1/1:0,75:75:99:2642,223,0 1/1:0,90:90:99:2948,241,0 1/1:0,94:94:99:3182,262,0 1/1:0,99:99:99:3264,271,0 1/1:0,100:100:99:3388,280,0 10 121086097 . A T 598.68 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.853;DP=1947;Dels=0.00;FS=3.855;HRun=0;HaplotypeScore=0.6757;InbreedingCoeff=-0.0244;MQ=59.02;MQ0=0;MQRankSum=0.629;QD=10.50;ReadPosRankSum=-1.638 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,111,1424 0/0:34,0:34:93.29:0,93,1159 0/0:29,0:29:78.25:0,78,989 0/0:65,0:65:99:0,178,2284 0/0:44,0:44:99:0,117,1493 0/0:36,0:36:87.27:0,87,1145 0/0:40,0:40:99:0,111,1442 0/0:30,0:30:78.25:0,78,1018 0/0:38,0:38:99:0,99,1270 0/0:43,0:43:99:0,111,1408 0/0:40,0:40:99:0,111,1389 0/0:46,0:46:99:0,117,1510 0/0:42,0:42:99:0,99,1290 0/1:21,14:35:99:362,0,640 0/0:156,0:156:99:0,394,4959 0/0:38,0:38:99:0,108,1348 0/0:52,0:52:99:0,138,1748 0/0:40,0:40:99:0,111,1400 0/0:50,0:50:99:0,126,1615 0/0:64,0:64:99:0,150,1945 0/0:85,0:85:99:0,208,2658 0/0:35,0:35:93.30:0,93,1179 0/0:61,0:61:99:0,166,2125 0/0:31,0:31:78.25:0,78,1027 0/0:57,0:57:99:0,138,1830 0/0:41,0:41:99:0,105,1389 0/0:38,0:38:99:0,105,1318 0/0:48,0:48:99:0,117,1498 0/0:35,0:35:87.28:0,87,1121 0/0:50,0:50:99:0,135,1673 0/0:45,0:45:99:0,114,1470 0/0:58,0:58:99:0,153,1934 0/0:37,0:37:99:0,99,1249 0/0:40,0:40:99:0,99,1270 0/0:33,0:33:99:0,99,1225 0/0:43,0:43:99:0,117,1473 0/0:57,0:57:99:0,144,1837 0/0:43,0:44:99:0,111,1390 0/0:42,0:42:99:0,114,1420 0/0:47,0:47:99:0,132,1618 0/1:12,10:22:99:299,0,375 0/0:32,0:32:93.29:0,93,1159 10 121557064 . C T 166.32 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.082;DP=968;Dels=0.00;FS=3.449;HRun=0;HaplotypeScore=0.4750;InbreedingCoeff=-0.0121;MQ=59.40;MQ0=0;MQRankSum=1.251;QD=9.78;ReadPosRankSum=1.243 GT:AD:DP:GQ:PL 0/0:11,0:11:33.11:0,33,423 0/0:15,0:15:45.14:0,45,567 0/0:9,0:9:24.08:0,24,310 0/0:60,0:60:99:0,156,2091 0/0:29,0:29:78.25:0,78,1045 0/0:37,0:37:96.32:0,96,1324 0/0:26,0:26:72.24:0,72,986 0/0:24,0:24:63.20:0,63,858 0/0:12,0:12:36.11:0,36,464 0/0:16,0:16:45.14:0,45,566 0/0:14,0:14:36.11:0,36,458 0/0:19,0:19:54.16:0,54,661 0/0:17,0:17:51.16:0,51,658 0/0:14,0:14:39.11:0,39,486 0/0:60,0:61:99:0,168,2097 0/0:14,0:14:36.10:0,36,455 0/0:12,0:12:33.11:0,33,424 0/0:17,0:17:45.14:0,45,583 0/0:30,0:30:84.26:0,84,1064 0/0:32,0:32:81.25:0,81,1040 0/0:16,0:16:45.14:0,45,567 0/1:10,7:17:99:213,0,318 0/0:44,0:44:99:0,111,1511 0/0:34,0:34:96.31:0,96,1300 0/0:36,0:36:96.31:0,96,1310 0/0:24,0:24:69.22:0,69,926 0/0:18,0:18:51.16:0,51,655 0/0:22,0:22:66.21:0,66,826 0/0:22,0:22:57.17:0,57,733 0/0:10,0:10:30.09:0,30,373 0/0:13,0:13:39.13:0,39,509 0/0:20,0:20:60.19:0,60,782 0/0:20,0:20:54.17:0,54,682 0/0:24,0:24:69.20:0,69,860 0/0:13,0:13:36.11:0,36,449 0/0:34,0:34:87.26:0,87,1075 0/0:33,0:33:93.28:0,93,1157 0/0:13,0:13:33.07:0,33,394 0/0:22,0:22:60.19:0,60,768 0/0:16,0:16:45.14:0,45,572 0/0:15,0:15:45.14:0,45,556 0/0:33,0:33:93.30:0,93,1185 10 121579040 . T C 240.60 . 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C T 17494.71 . 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G C 1189.73 . 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T G 61928.68 . 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G A 4990.07 . 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G A 11593.76 . 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C T 1242.51 . 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T C 20036.44 . 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G T 1104.72 . 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G A 31835.28 . 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G A 14154.05 . 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A C 1098.87 . 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T G 10810.38 . 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G A 67532.75 . 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C T 1067.21 . 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G T 1639.95 . 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G A 3072.07 . 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G A 1160.81 . 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C G 136572.73 . AC=60;AF=0.714;AN=84;BaseQRankSum=-32.344;DP=6870;DS;Dels=0.00;FS=12.011;HRun=0;HaplotypeScore=3.6892;InbreedingCoeff=-0.2833;MQ=59.52;MQ0=0;MQRankSum=-1.064;QD=20.39;ReadPosRankSum=-0.320 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3726,274,0 1/1:1,134:135:99:4308,326,0 1/1:0,136:136:99:4412,361,0 0/1:168,82:250:99:2212,0,5174 0/1:147,86:233:99:2459,0,4772 1/1:0,182:182:99:6147,469,0 1/1:1,168:169:99:5782,404,0 0/1:132,97:230:99:2604,0,3772 0/1:88,58:146:99:1546,0,2556 0/1:71,66:137:99:1760,0,1984 0/1:65,54:119:99:1349,0,1932 1/1:0,109:109:99:3640,310,0 0/1:68,55:123:99:1453,0,1834 1/1:0,135:135:99:4325,361,0 1/1:0,250:250:99:8406,704,0 0/1:65,38:103:99:891,0,1932 0/1:88,72:160:99:1962,0,2583 0/1:70,83:153:99:2148,0,1998 0/1:131,102:234:99:2619,0,3700 0/1:116,119:235:99:3197,0,3442 1/1:0,244:244:99:7544,614,0 1/1:0,125:125:99:4037,331,0 1/1:0,250:250:99:8380,626,0 0/1:110,78:188:99:2017,0,3175 0/1:129,82:211:99:2158,0,4109 0/1:137,92:229:99:2447,0,4137 1/1:0,83:83:99:2625,220,0 0/1:89,59:151:99:1518,0,2616 1/1:0,102:102:99:3306,277,0 1/1:0,113:113:99:3691,304,0 1/1:0,101:101:99:3319,277,0 1/1:0,232:232:99:7421,608,0 1/1:0,163:163:99:5229,430,0 0/1:81,48:129:99:1244,0,2473 1/1:2,129:131:99:4180,313,0 0/0:172,0:172:99:0,433,5640 0/1:150,90:242:99:2253,0,4266 0/1:74,68:142:99:1825,0,2223 0/1:72,68:140:99:1901,0,2238 0/1:79,59:138:99:1657,0,2308 1/1:5,107:112:98.36:3198,98,0 0/1:51,60:111:99:1677,0,1520 10 128147658 . A G 35.73 . 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T C 106361.96 . AC=67;AF=0.798;AN=84;BaseQRankSum=12.494;DP=4272;Dels=0.00;FS=3.077;HRun=0;HaplotypeScore=1.2685;InbreedingCoeff=-0.1062;MQ=59.58;MQ0=0;MQRankSum=0.120;QD=25.38;ReadPosRankSum=-0.002 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2298,184,0 1/1:0,61:61:99:2076,169,0 1/1:0,59:59:99:2103,171,0 0/1:124,96:220:99:2640,0,3378 1/1:0,197:197:99:6808,506,0 0/1:107,96:203:99:2755,0,3257 0/1:91,104:195:99:2855,0,2639 1/1:0,180:180:99:6229,467,0 1/1:0,78:78:99:2566,205,0 0/1:26,29:55:99:841,0,744 1/1:0,60:60:99:2086,169,0 1/1:0,48:48:99:1701,138,0 1/1:0,61:61:99:2092,169,0 1/1:0,60:60:99:2086,169,0 0/1:120,109:229:99:2923,0,3241 0/1:20,22:42:99:597,0,576 0/1:43,32:75:99:865,0,1245 1/1:0,62:62:99:2199,181,0 0/1:45,48:93:99:1246,0,1288 0/1:51,49:100:99:1437,0,1405 1/1:0,113:113:99:3655,289,0 1/1:0,70:70:99:2312,190,0 0/1:102,114:216:99:3307,0,2680 1/1:0,172:174:99:6090,454,0 1/1:0,204:204:99:6796,500,0 1/1:0,189:189:99:6827,518,0 0/1:25,25:50:99:676,0,713 0/1:25,37:62:99:1081,0,660 0/1:35,27:62:99:792,0,1051 1/1:0,80:80:99:2695,217,0 1/1:0,57:57:99:2015,162,0 0/1:56,59:115:99:1670,0,1607 1/1:0,58:58:99:1890,150,0 0/1:38,39:77:99:1123,0,1089 1/1:0,59:59:99:2009,165,0 0/0:81,0:81:99:0,214,2653 1/1:0,90:90:99:2932,235,0 1/1:1,81:82:99:2636,186,0 1/1:1,70:71:99:2127,141,0 1/1:0,72:72:99:2536,205,0 1/1:0,70:70:99:2366,190,0 1/1:0,72:72:99:2426,190,0 10 128788734 . A G 602.09 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.900;DP=1234;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.3481;InbreedingCoeff=-0.0244;MQ=59.24;MQ0=0;MQRankSum=0.280;QD=13.09;ReadPosRankSum=1.831 GT:AD:DP:GQ:PL 0/0:26,0:26:69.20:0,69,842 0/0:23,0:23:66.20:0,66,802 0/0:18,0:18:54.17:0,54,659 0/0:24,0:24:69.21:0,69,842 0/0:24,0:24:66.21:0,66,835 0/0:25,0:25:69.22:0,69,899 0/0:17,0:17:45.14:0,45,564 0/0:26,1:27:32.91:0,33,829 0/0:21,0:21:63.19:0,63,756 0/0:24,0:24:69.20:0,69,821 0/0:24,0:24:63.17:0,63,766 0/0:31,0:31:87.27:0,87,1081 0/0:17,0:17:45.14:0,45,559 0/0:26,0:26:75.23:0,75,921 0/0:76,0:76:99:0,217,2583 0/0:16,0:16:42.13:0,42,526 0/0:22,0:22:66.20:0,66,789 0/0:22,0:22:60.19:0,60,741 0/0:61,0:61:99:0,169,2077 0/0:43,0:43:99:0,123,1491 0/0:45,0:45:99:0,123,1501 0/0:30,0:30:87.26:0,87,1045 0/0:28,0:28:75.24:0,75,955 0/1:11,9:20:99:291,0,354 0/1:15,11:26:99:373,0,391 0/0:17,0:17:48.15:0,48,602 0/0:19,0:19:57.16:0,57,675 0/0:38,0:38:96.30:0,96,1193 0/0:27,0:27:78.24:0,78,951 0/0:19,0:20:54.16:0,54,652 0/0:29,0:29:84.26:0,84,1030 0/0:45,0:45:99:0,123,1486 0/0:41,0:41:99:0,108,1348 0/0:41,0:41:99:0,111,1364 0/0:18,0:18:48.15:0,48,599 0/0:30,0:30:81.25:0,81,1010 0/0:52,1:53:99:0,141,1736 0/0:27,0:27:78.24:0,78,961 0/0:30,0:30:84.26:0,84,1041 0/0:35,0:35:99:0,105,1272 0/0:26,0:26:72.22:0,72,893 0/0:22,0:22:60.18:0,60,718 10 128807018 . A C 853.84 . AC=7;AF=0.083;AN=84;BaseQRankSum=7.729;DP=657;Dels=0.00;FS=7.527;HRun=0;HaplotypeScore=0.1542;InbreedingCoeff=-0.0926;MQ=59.02;MQ0=0;MQRankSum=0.315;QD=11.09;ReadPosRankSum=-0.634 GT:AD:DP:GQ:PL 0/1:6,5:11:99:162,0,155 0/0:11,0:11:27.08:0,27,329 0/0:5,0:5:12.04:0,12,150 0/0:22,0:22:57.18:0,57,709 0/0:25,0:25:60.19:0,60,771 0/0:27,0:27:66.21:0,66,858 0/0:20,0:20:48.15:0,48,617 0/0:16,0:16:42.13:0,42,526 0/0:12,0:12:30.09:0,30,371 0/0:8,0:8:24.06:0,24,266 0/0:16,0:16:39.11:0,39,480 0/0:20,0:21:45.14:0,45,582 0/0:13,0:13:36.10:0,36,421 0/0:15,0:15:39.12:0,39,488 0/0:46,0:46:99:0,114,1401 0/0:8,0:8:24.07:0,24,288 0/0:12,0:12:36.11:0,36,428 0/1:10,7:17:99:212,0,294 0/0:26,0:26:69.21:0,69,844 0/0:21,0:21:57.16:0,57,684 0/0:13,0:13:36.11:0,36,444 0/0:8,0:8:18.05:0,18,219 0/0:15,0:15:42.13:0,42,520 0/0:26,0:26:69.21:0,69,853 0/0:20,0:20:51.16:0,51,633 0/0:19,0:19:48.14:0,48,593 0/1:3,2:5:62.11:62,0,92 0/0:15,0:15:42.10:0,42,474 0/1:3,2:5:63.31:65,0,63 0/0:20,0:20:54.16:0,54,659 0/0:6,0:6:18.06:0,18,220 0/0:16,0:16:42.13:0,42,519 0/0:23,0:23:57.17:0,57,702 0/0:13,0:13:33.10:0,33,409 0/0:7,0:7:18.06:0,18,216 0/0:15,0:15:39.12:0,39,479 0/0:20,0:20:48.13:0,48,578 0/0:10,0:10:30.09:0,30,357 0/0:10,0:10:30.09:0,30,352 0/1:6,6:12:99:192,0,180 0/1:13,4:17:99:110,0,367 0/1:5,5:10:99:164,0,141 10 128944203 . AG A 227.96 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.321;DP=693;FS=0.000;HRun=2;HaplotypeScore=38.9024;InbreedingCoeff=-0.0252;MQ=59.25;MQ0=0;MQRankSum=0.469;QD=7.35;ReadPosRankSum=-0.882 GT:AD:DP:GQ:PL 0/0:10,0:10:30.10:0,30,450 0/0:8,0:8:24.07:0,24,329 0/0:11,0:11:33.11:0,33,478 0/0:22,0:22:63.21:0,63,935 0/0:23,0:23:69.21:0,69,1013 0/1:11,3:14:74.78:75,0,453 0/1:10,7:17:99:225,0,348 0/0:17,0:17:51.17:0,51,755 0/0:15,0:14:45.15:0,45,673 0/0:10,0:10:30.10:0,30,438 0/0:8,0:8:24.08:0,24,358 0/0:7,0:7:21.07:0,21,315 0/0:13,0:13:39.13:0,39,585 0/0:7,0:6:18.06:0,18,270 0/0:53,0:53:99:0,160,2355 0/0:16,0:16:48.16:0,48,720 0/0:13,0:13:39.13:0,39,568 0/0:18,0:18:51.17:0,51,752 0/0:33,0:33:93.31:0,93,1365 0/0:36,0:36:99:0,108,1582 0/0:31,0:31:90.30:0,90,1348 0/0:10,0:10:30.10:0,30,450 0/0:22,0:22:63.21:0,63,945 0/0:9,0:9:27.09:0,27,405 0/0:13,0:12:39.13:0,39,585 0/0:9,0:9:27.09:0,27,405 0/0:12,0:12:36.12:0,36,540 0/0:14,0:14:39.13:0,39,585 0/0:8,0:8:24.08:0,24,360 0/0:12,0:12:33.11:0,33,495 0/0:17,0:17:51.17:0,51,750 0/0:26,0:26:75.25:0,75,1111 0/0:22,0:22:63.21:0,63,945 0/0:9,0:9:27.09:0,27,405 0/0:6,0:6:18.06:0,18,270 0/0:18,0:18:54.18:0,54,809 0/0:29,0:29:87.29:0,87,1283 0/0:17,0:17:51.17:0,51,765 0/0:16,0:16:48.16:0,48,719 0/0:18,0:18:54.17:0,54,776 0/0:11,0:11:33.11:0,33,495 0/0:13,0:13:39.11:0,39,564 10 129200964 . G A 107960.94 . AC=28;AF=0.333;AN=84;BaseQRankSum=-36.469;DP=10500;DS;Dels=0.00;FS=7.474;HRun=0;HaplotypeScore=6.4593;InbreedingCoeff=0.2500;MQ=59.55;MQ0=1;MQRankSum=0.738;QD=20.56;ReadPosRankSum=1.718 GT:AD:DP:GQ:PL 1/1:0,250:250:99:8600,725,0 0/1:112,138:250:99:3865,0,3296 0/0:250,0:250:99:0,713,8780 1/1:0,250:250:99:8389,728,0 0/1:121,129:250:99:3742,0,3787 0/1:133,116:250:99:3238,0,3987 0/0:248,1:250:99:0,689,9265 0/1:125,125:250:99:3573,0,3909 1/1:0,249:250:99:8240,692,0 0/1:125,125:250:99:3512,0,3493 0/1:123,127:250:99:3683,0,3455 0/0:250,0:250:99:0,695,8526 0/1:133,117:250:99:3221,0,3788 0/0:250,0:250:99:0,707,8601 0/0:249,0:250:99:0,686,8166 0/0:249,0:250:99:0,698,8596 0/1:131,118:250:99:3262,0,3888 0/0:250,0:250:99:0,719,8844 0/0:249,0:250:99:0,698,8143 0/0:249,1:250:99:0,667,8302 0/0:248,0:250:99:0,695,8257 0/0:250,0:250:99:0,695,8710 0/1:124,126:250:99:3411,0,3865 0/0:248,2:250:99:0,655,9130 0/0:249,0:250:99:0,728,9317 0/1:115,134:250:99:3703,0,3598 1/1:0,250:250:99:8343,704,0 1/1:1,249:250:99:8426,707,0 0/1:127,123:250:99:3396,0,3708 0/1:110,140:250:99:4025,0,3147 0/0:249,0:250:99:0,698,8588 0/1:125,125:250:99:3396,0,3452 1/1:3,247:250:99:8070,585,0 0/0:249,0:250:99:0,710,8730 0/0:250,0:250:99:0,722,8801 0/0:250,0:250:99:0,704,8645 0/1:125,125:250:99:3610,0,3314 1/1:1,249:250:99:8253,668,0 0/0:248,2:250:99:0,629,8517 0/0:250,0:250:99:0,704,8632 0/0:243,7:250:99:0,451,7995 0/0:250,0:250:99:0,707,8701 10 129347785 . C T 12960.14 . AC=8;AF=0.095;AN=84;BaseQRankSum=-0.162;DP=4952;DS;Dels=0.00;FS=1.161;HRun=1;HaplotypeScore=1.7349;InbreedingCoeff=0.1711;MQ=59.49;MQ0=0;MQRankSum=-0.724;QD=14.53;ReadPosRankSum=0.889 GT:AD:DP:GQ:PL 0/0:62,0:62:99:0,159,1983 0/0:104,0:104:99:0,274,3330 0/0:80,0:80:99:0,211,2633 0/0:248,0:248:99:0,638,8278 0/0:219,0:219:99:0,560,7392 0/1:120,105:225:99:2873,0,3501 0/1:93,86:179:99:2306,0,2695 0/0:183,0:183:99:0,454,5997 0/0:84,0:84:99:0,229,2811 0/0:86,0:86:99:0,226,2688 0/0:75,1:76:99:0,152,2327 0/0:91,0:91:99:0,256,3144 0/0:81,1:82:99:0,188,2520 0/1:29,31:60:99:911,0,824 0/1:132,114:246:99:3102,0,3623 0/0:65,0:65:99:0,174,2148 1/1:0,64:64:99:2204,178,0 0/0:98,0:98:99:0,247,3045 0/0:119,0:119:99:0,310,3751 0/0:128,0:128:99:0,328,4028 0/0:100,0:100:99:0,259,3149 0/0:83,0:83:99:0,214,2619 0/0:250,0:250:99:0,653,8664 0/0:222,1:223:99:0,506,7166 0/0:201,0:203:99:0,497,6615 0/0:216,1:219:99:0,516,7119 0/1:30,31:61:99:854,0,817 0/0:86,0:86:99:0,223,2781 0/1:33,24:57:99:710,0,910 0/0:88,0:88:99:0,232,2822 0/0:62,1:63:99:0,141,2051 0/0:116,0:116:99:0,280,3532 0/0:80,0:80:99:0,205,2495 0/0:81,0:81:99:0,208,2527 0/0:93,0:93:99:0,247,3033 0/0:102,0:102:99:0,277,3359 0/0:120,0:120:99:0,289,3600 0/0:85,0:85:99:0,238,2834 0/0:85,0:85:99:0,229,2760 0/0:78,0:78:99:0,214,2580 0/0:80,0:80:99:0,205,2496 0/0:100,0:100:99:0,271,3256 10 129845924 . G A 1219.63 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.828;DP=3266;Dels=0.00;FS=1.750;HRun=1;HaplotypeScore=1.6293;InbreedingCoeff=-0.0244;MQ=58.96;MQ0=0;MQRankSum=0.716;QD=11.84;ReadPosRankSum=-0.324 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,144,1813 0/0:43,0:43:99:0,108,1388 0/0:47,0:47:99:0,129,1609 0/0:150,0:150:99:0,427,5584 0/0:119,0:119:99:0,328,4398 0/0:102,0:102:99:0,277,3702 0/0:85,0:85:99:0,238,3144 0/0:112,0:112:99:0,307,4038 0/1:37,28:65:99:684,0,1117 0/0:53,0:53:99:0,141,1780 0/1:17,21:38:99:598,0,488 0/0:62,0:62:99:0,178,2237 0/0:49,0:49:99:0,135,1713 0/0:59,0:59:99:0,166,2088 0/0:203,0:204:99:0,533,6800 0/0:72,0:72:99:0,202,2550 0/0:62,0:62:99:0,175,2215 0/0:50,0:50:99:0,138,1744 0/0:101,0:102:99:0,280,3464 0/0:107,0:107:99:0,274,3521 0/0:97,0:97:99:0,250,3144 0/0:80,0:80:99:0,214,2708 0/0:153,0:153:99:0,418,5607 0/0:102,0:102:99:0,277,3767 0/0:112,0:112:99:0,307,4104 0/0:84,0:84:99:0,226,3025 0/0:57,0:57:99:0,153,1931 0/0:69,0:69:99:0,202,2475 0/0:44,0:44:99:0,114,1466 0/0:55,0:55:99:0,159,2010 0/0:56,0:56:99:0,153,1891 0/0:112,0:112:99:0,298,3811 0/0:76,0:76:99:0,205,2610 0/0:46,0:46:99:0,135,1710 0/0:48,0:48:99:0,141,1747 0/0:56,0:56:99:0,147,1840 0/0:105,0:105:99:0,268,3348 0/0:65,0:65:99:0,165,2095 0/0:59,0:59:99:0,169,2086 0/0:56,0:57:99:0,153,1919 0/0:51,0:51:99:0,141,1725 0/0:47,0:47:99:0,129,1636 10 129866449 . C G 5444.18 . AC=8;AF=0.095;AN=84;BaseQRankSum=-2.417;DP=2150;Dels=0.00;FS=13.343;HRun=1;HaplotypeScore=1.3942;InbreedingCoeff=0.1710;MQ=59.22;MQ0=1;MQRankSum=-0.940;QD=15.34;ReadPosRankSum=-1.944 GT:AD:DP:GQ:PL 1/1:1,36:37:99:1143,99,0 0/1:16,24:40:99:633,0,408 0/0:34,0:34:96.27:0,96,1125 0/0:117,0:117:99:0,328,3986 0/0:95,0:95:99:0,250,3089 0/1:37,33:70:99:901,0,1045 0/0:67,0:67:99:0,184,2280 0/1:37,23:61:99:582,0,1068 0/0:36,0:36:99:0,99,1093 0/1:11,12:23:99:337,0,222 0/0:36,0:36:90.25:0,90,1095 0/0:36,0:36:96.25:0,96,1147 0/0:38,0:38:93.26:0,93,1104 0/0:27,0:27:72.20:0,72,841 0/0:114,0:114:99:0,280,3365 0/1:11,19:31:99:488,0,277 0/0:32,0:32:96.27:0,96,1100 0/0:23,0:23:63.18:0,63,759 0/0:72,0:72:99:0,190,2163 0/1:39,54:93:99:1359,0,1017 0/0:75,0:76:99:0,196,2296 0/0:61,1:62:99:0,140,1958 0/0:118,0:118:99:0,316,3919 0/0:59,0:59:99:0,150,1905 0/0:68,0:68:99:0,178,2240 0/0:63,0:63:99:0,175,2144 0/0:30,0:30:90.25:0,90,1049 0/0:35,0:35:93.26:0,93,1115 0/0:28,0:28:75.21:0,75,877 0/0:36,0:36:99:0,99,1135 0/0:29,0:29:84.24:0,84,986 0/0:94,0:94:99:0,247,2967 0/0:65,0:65:99:0,171,2053 0/0:26,0:26:72.20:0,72,847 0/0:36,1:37:79.76:0,80,1232 0/0:33,0:33:90.25:0,90,1078 0/0:81,0:82:99:0,220,2524 0/0:24,0:24:60.17:0,60,693 0/0:35,0:35:99:0,99,1176 0/0:21,0:21:57.12:0,57,645 0/0:13,0:13:33.09:0,33,379 0/0:34,0:34:93.27:0,93,1113 10 129911856 . C G 17762.17 . 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G A 733.04 . 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A T 10970.12 . 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G C 24.99 . AC=4;AF=0.083;AN=48;BaseQRankSum=0.830;DP=44;Dels=0.00;FS=2.551;HRun=0;HaplotypeScore=0.0277;InbreedingCoeff=-0.0575;MQ=57.97;MQ0=0;MQRankSum=-0.049;QD=3.12;ReadPosRankSum=0.098 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6:0,6,61 ./. ./. 0/0:1,0:1:3.01:0,3,42 ./. ./. ./. 0/0:1,0:1:3.01:0,3,36 0/0:1,0:1:3.01:0,3,38 0/0:1,0:1:3.01:0,3,33 ./. ./. ./. 0/0:4,0:4:9.02:0,9,97 ./. 0/0:2,0:2:6.02:0,6,64 0/0:2,0:2:6.02:0,6,75 0/0:1,0:1:3.01:0,3,36 ./. 0/0:4,0:4:12.04:0,12,146 0/0:1,0:1:3.01:0,3,37 ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,73 0/0:2,0:2:6.02:0,6,70 0/0:1,0:1:3.01:0,3,33 0/0:1,0:1:3.01:0,3,32 0/1:4,1:5:21.94:22,0,121 0/0:1,0:1:3.01:0,3,31 ./. ./. 0/0:4,0:4:12.04:0,12,145 1/1:0,1:1:3.01:36,3,0 ./. 0/1:1,1:2:23.61:32,0,24 ./. 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,38 10 132961454 . C T 701.42 . 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T C 44463.21 . 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C T 2528.86 . 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G A 43.64 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.969;DP=534;Dels=0.00;FS=5.240;HRun=1;HaplotypeScore=0.6271;InbreedingCoeff=-0.0184;MQ=58.66;MQ0=0;MQRankSum=0.322;QD=8.73;ReadPosRankSum=0.553 GT:AD:DP:GQ:PL 0/1:2,3:5:57.70:90,0,58 0/0:9,0:9:24.08:0,24,305 0/0:4,0:4:9.03:0,9,119 0/0:44,0:44:99:0,111,1438 0/0:30,0:30:84.27:0,84,1096 0/0:25,0:25:69.19:0,69,884 0/0:12,0:12:30.09:0,30,384 0/0:18,0:18:48.12:0,48,599 0/0:5,0:5:12.04:0,12,156 0/0:9,0:9:24.07:0,24,302 0/0:5,0:5:15.05:0,15,184 0/0:4,0:4:12.04:0,12,149 0/0:8,0:8:21.07:0,21,268 0/0:9,0:9:21.07:0,21,270 0/0:20,0:20:57.17:0,57,703 0/0:7,0:7:18.06:0,18,233 0/0:10,0:10:30.10:0,30,379 0/0:12,0:12:36.11:0,36,446 0/0:8,0:8:21.06:0,21,254 0/0:19,0:19:51.14:0,51,634 0/0:19,0:20:45.14:0,45,576 0/0:15,0:15:36.11:0,36,463 0/0:36,0:36:87.26:0,87,1160 0/0:11,0:11:33.08:0,33,403 0/0:17,0:17:48.15:0,48,632 0/0:17,0:17:39.11:0,39,499 0/0:7,0:7:21.06:0,21,256 0/0:4,0:4:12.04:0,12,146 0/0:7,0:7:21.07:0,21,262 0/0:9,0:9:24.07:0,24,301 0/0:6,0:6:18.05:0,18,203 0/0:24,0:24:66.21:0,66,846 0/0:12,0:12:24.08:0,24,312 0/0:7,0:7:21.07:0,21,259 0/0:12,0:12:36.11:0,36,436 0/0:4,0:4:12.04:0,12,143 0/0:15,0:15:36.11:0,36,451 0/0:7,0:7:21.07:0,21,260 0/0:9,0:9:24.08:0,24,308 0/0:8,0:8:24.08:0,24,304 0/0:5,0:5:15.05:0,15,184 0/0:19,0:19:51.14:0,51,613 10 134015547 . T G 45.09 . AC=3;AF=0.036;AN=84;BaseQRankSum=-33.711;DP=3695;Dels=0.00;FS=444.919;HRun=3;HaplotypeScore=2.0926;InbreedingCoeff=-0.0454;MQ=59.06;MQ0=0;MQRankSum=-2.694;QD=0.20;ReadPosRankSum=-14.346 GT:AD:DP:GQ:PL 0/0:62,20:82:99:0,102,1754 0/0:51,16:68:99:0,119,1335 0/0:40,11:51:52.27:0,52,1172 0/0:153,74:227:99:0,278,4540 0/0:110,59:169:99:0,114,3204 0/0:99,41:140:99:0,120,2628 0/0:88,36:124:99:0,142,2585 0/0:83,27:111:99:0,155,2163 0/0:32,13:45:89.74:0,90,1010 0/0:38,16:54:52.75:0,53,999 0/0:35,13:48:1.97:2,0,961 0/0:43,15:58:70.13:0,70,1240 0/0:44,11:56:99:0,108,1197 0/0:36,8:44:69.60:0,70,1053 0/0:143,46:190:99:0,127,3929 0/0:58,23:81:97.12:0,97,1659 0/1:38,13:52:36.22:36,0,1002 0/0:37,15:52:44.99:0,45,1061 0/0:75,37:112:20.95:0,21,2188 0/0:107,13:120:99:0,264,3454 0/1:85,36:121:51.47:51,0,2373 0/0:68,17:85:99:0,161,2010 0/0:137,66:203:99:0,294,3947 0/0:72,31:103:99:0,151,1966 0/0:107,46:153:99:0,253,3097 0/0:67,29:96:99:0,136,2094 0/0:45,12:58:99:0,104,1371 0/0:26,9:35:33.04:0,33,712 0/0:43,8:51:69.06:0,69,1281 0/0:50,14:64:35.02:0,35,1396 0/0:41,14:57:84.55:0,85,1204 0/0:91,15:106:99:0,235,2711 0/0:70,13:83:99:0,165,2051 0/0:47,11:58:73.26:0,73,1480 0/1:32,19:51:32.30:32,0,771 0/0:48,14:63:82.06:0,82,1373 0/0:71,24:95:25.06:0,25,2047 0/0:55,17:72:85.16:0,85,1475 0/0:46,18:64:45.67:0,46,1380 0/0:58,19:77:65.38:0,65,1772 0/0:35,16:51:87.19:0,87,971 0/0:49,16:65:56.35:0,56,1374 10 134017295 . A G 47539.70 . AC=76;AF=0.905;AN=84;BaseQRankSum=7.565;DP=1508;Dels=0.00;FS=0.565;HRun=2;HaplotypeScore=1.7846;InbreedingCoeff=-0.1053;MQ=59.19;MQ0=0;MQRankSum=0.911;QD=31.53;ReadPosRankSum=0.682 GT:AD:DP:GQ:PL 1/1:0,12:13:30.09:383,30,0 1/1:0,17:17:51.15:627,51,0 1/1:0,15:15:45.14:572,45,0 1/1:0,94:94:99:3360,265,0 1/1:0,115:115:99:4173,328,0 1/1:0,72:72:99:2533,199,0 1/1:0,64:64:99:2330,181,0 0/1:32,23:56:99:640,0,886 0/1:8,10:18:99:263,0,229 1/1:0,13:13:33.09:401,33,0 0/1:8,8:16:99:252,0,241 1/1:0,19:19:57.18:713,57,0 1/1:0,16:16:42.12:500,42,0 1/1:0,19:19:51.15:628,51,0 1/1:0,66:66:99:2236,189,0 1/1:0,24:24:72.21:868,72,0 1/1:0,31:31:87.25:1038,87,0 1/1:0,18:18:54.15:657,54,0 1/1:0,29:29:78.17:916,78,0 1/1:0,47:47:99:1518,126,0 1/1:0,33:33:90.21:1037,90,0 1/1:0,21:21:63.20:801,63,0 1/1:0,110:110:99:3891,307,0 1/1:0,73:73:99:2714,214,0 1/1:0,66:67:99:2251,180,0 0/1:31,36:68:99:999,0,842 0/1:5,8:13:99:195,0,150 1/1:0,19:19:54.14:644,54,0 0/1:11,7:18:99:171,0,308 1/1:0,26:26:75.20:889,75,0 1/1:0,16:16:48.15:595,48,0 1/1:0,39:39:99:1268,102,0 1/1:0,32:32:96.29:1191,96,0 1/1:0,24:24:69.22:861,69,0 1/1:0,16:16:45.14:558,45,0 1/1:0,25:25:72.21:872,72,0 0/1:10,16:26:99:461,0,243 1/1:0,31:31:90.25:1072,90,0 0/1:12,8:20:99:200,0,347 1/1:0,17:18:48.10:545,48,0 1/1:0,22:22:63.16:724,63,0 1/1:0,29:29:84.21:989,84,0 10 134017388 . C G 7756.16 . AC=9;AF=0.107;AN=84;BaseQRankSum=-4.008;DP=3384;Dels=0.00;FS=29.983;HRun=0;HaplotypeScore=2.6911;InbreedingCoeff=0.1289;MQ=59.21;MQ0=0;MQRankSum=0.102;QD=16.47;ReadPosRankSum=-1.313 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1965,153,0 0/1:22,25:47:99:729,0,510 0/0:39,0:39:99:0,117,1458 0/0:190,0:190:99:0,454,5942 0/0:180,0:180:99:0,472,6200 0/0:158,0:158:99:0,391,5129 0/0:97,0:98:99:0,241,3070 0/0:125,0:125:99:0,304,4017 0/0:40,0:41:99:0,114,1402 0/0:42,0:42:99:0,108,1362 0/0:35,0:35:90.28:0,90,1141 0/1:25,29:54:99:790,0,682 0/0:42,0:42:99:0,105,1374 0/1:18,19:37:99:588,0,482 0/0:192,0:193:99:0,472,5772 0/0:54,0:54:99:0,147,1850 0/0:53,1:54:99:0,118,1843 0/0:30,0:30:81.21:0,81,987 0/0:116,1:117:99:0,247,3464 0/0:123,0:123:99:0,307,3908 0/0:94,0:94:99:0,241,2992 0/1:29,38:67:99:989,0,776 0/0:226,0:226:99:0,566,7464 0/0:112,0:112:99:0,301,3932 0/0:137,1:138:99:0,304,4368 0/0:110,0:110:99:0,280,3601 0/0:37,0:37:99:0,102,1275 0/0:38,0:38:99:0,105,1314 0/0:35,0:35:90.28:0,90,1150 0/0:51,0:51:99:0,138,1739 0/1:28,23:51:99:713,0,758 0/1:66,51:117:99:1410,0,1861 0/0:85,0:85:99:0,214,2700 0/0:62,0:62:99:0,171,2097 0/0:36,0:36:99:0,102,1272 0/0:49,0:49:99:0,132,1661 0/0:87,0:88:99:0,226,2835 0/0:66,0:66:99:0,175,2164 0/0:53,0:53:99:0,144,1783 0/0:58,0:58:99:0,153,1887 0/0:53,0:53:99:0,141,1761 0/1:17,20:37:99:572,0,461 10 134017415 . G A 1169.09 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.052;DP=3213;Dels=0.00;FS=19.715;HRun=0;HaplotypeScore=2.9637;InbreedingCoeff=-0.0120;MQ=59.17;MQ0=0;MQRankSum=-0.781;QD=14.26;ReadPosRankSum=0.066 GT:AD:DP:GQ:PL 0/0:66,1:67:99:0,153,1869 0/0:53,0:53:99:0,147,1707 0/0:39,0:39:99:0,111,1238 0/0:156,0:156:99:0,409,5331 0/0:153,0:153:99:0,418,5511 0/0:135,0:135:99:0,364,4703 0/1:40,42:82:99:1215,0,1079 0/0:110,0:110:99:0,298,3870 0/0:48,0:48:99:0,120,1490 0/0:49,0:49:99:0,105,1311 0/0:39,0:39:96.28:0,96,1169 0/0:59,0:59:99:0,159,1901 0/0:41,0:41:99:0,114,1335 0/0:48,0:48:99:0,129,1580 0/0:189,0:190:99:0,436,5375 0/0:69,0:69:99:0,174,2043 0/0:55,0:55:99:0,138,1668 0/0:34,0:36:96.25:0,96,1123 0/0:107,0:108:99:0,262,3139 0/0:122,0:123:99:0,301,3598 0/0:86,0:86:99:0,223,2614 0/0:69,0:69:99:0,168,2046 0/0:169,0:169:99:0,436,5689 0/0:89,0:89:99:0,238,3071 0/0:108,0:109:99:0,307,3904 0/0:92,0:93:99:0,244,3118 0/0:35,0:35:99:0,99,1126 0/0:40,0:40:99:0,108,1238 0/0:34,0:35:87.26:0,87,1069 0/0:53,0:53:99:0,141,1627 0/0:57,0:57:99:0,153,1848 0/0:108,0:108:99:0,271,3204 0/0:83,0:83:99:0,220,2594 0/0:59,0:59:99:0,153,1775 0/0:42,0:42:99:0,111,1323 0/0:53,0:53:99:0,141,1689 0/0:106,1:107:99:0,247,2991 0/0:60,0:60:99:0,153,1806 0/0:53,0:53:99:0,141,1662 0/0:61,0:61:99:0,159,1888 0/0:54,0:54:99:0,135,1661 0/0:37,1:38:80.64:0,81,1229 10 134040319 . G A 513.48 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.630;DP=1603;Dels=0.00;FS=1.906;HRun=0;HaplotypeScore=2.1251;InbreedingCoeff=-0.0120;MQ=58.87;MQ0=0;MQRankSum=0.489;QD=11.16;ReadPosRankSum=0.706 GT:AD:DP:GQ:PL 0/0:28,0:29:78.18:0,78,829 0/0:31,0:31:81.17:0,81,880 0/0:33,0:33:90.22:0,90,1025 0/0:84,0:84:99:0,235,2861 0/0:54,0:54:99:0,147,1867 0/0:43,0:43:99:0,111,1354 0/1:24,22:46:99:560,0,658 0/0:49,0:49:99:0,123,1559 0/0:29,0:30:78.22:0,78,892 0/0:31,0:31:78.18:0,78,880 0/0:31,0:31:87.22:0,87,983 0/0:30,0:30:87.22:0,87,970 0/0:33,0:33:87.21:0,87,976 0/0:27,0:27:78.20:0,78,858 0/0:88,0:88:99:0,223,2519 0/0:37,0:37:96.26:0,96,1100 0/0:35,0:35:87.22:0,87,975 0/0:29,0:29:84.20:0,84,926 0/0:29,0:30:78.21:0,78,905 0/0:55,0:55:99:0,144,1609 0/0:48,0:48:99:0,138,1542 0/0:30,0:30:84.21:0,84,924 0/0:65,0:65:99:0,159,2046 0/0:35,0:35:84.21:0,84,1007 0/0:53,0:53:99:0,135,1697 0/0:48,0:48:99:0,114,1423 0/0:16,0:16:42.09:0,42,455 0/0:21,0:21:57.14:0,57,654 0/0:27,0:27:78.20:0,78,880 0/0:24,0:24:72.18:0,72,793 0/0:25,0:25:69.09:0,69,713 0/0:54,0:54:99:0,135,1582 0/0:48,0:48:99:0,126,1427 0/0:36,0:36:99:0,102,1131 0/0:33,0:33:87.22:0,87,956 0/0:33,0:33:93.22:0,93,1038 0/0:51,0:51:99:0,132,1468 0/0:28,0:28:75.20:0,75,842 0/0:25,0:26:69.15:0,69,751 0/0:24,0:24:66.17:0,66,729 0/0:22,0:22:63.12:0,63,659 0/0:31,0:31:78.21:0,78,898 10 134040367 . C T 3849.19 . AC=6;AF=0.071;AN=84;BaseQRankSum=2.852;DP=2002;Dels=0.00;FS=21.720;HRun=0;HaplotypeScore=1.2515;InbreedingCoeff=-0.0769;MQ=58.83;MQ0=0;MQRankSum=-0.458;QD=13.27;ReadPosRankSum=0.923 GT:AD:DP:GQ:PL 0/1:15,26:41:99:751,0,395 0/1:24,25:49:99:669,0,629 0/0:47,0:47:99:0,135,1583 0/0:102,0:102:99:0,277,3423 0/0:59,0:59:99:0,172,2136 0/0:42,0:42:99:0,123,1520 0/0:50,0:50:99:0,132,1668 0/0:52,0:52:99:0,141,1785 0/0:35,0:35:93.27:0,93,1126 0/0:39,0:39:99:0,105,1275 0/0:38,0:38:99:0,105,1238 0/0:32,0:32:96.28:0,96,1134 0/0:37,0:37:99:0,108,1264 0/0:42,0:42:99:0,111,1335 0/0:131,0:132:99:0,325,3992 0/0:53,0:53:99:0,144,1685 0/0:50,0:50:99:0,126,1537 0/0:37,0:37:99:0,102,1197 0/0:49,0:50:99:0,132,1561 0/1:41,39:80:99:1040,0,1051 0/0:71,0:71:99:0,187,2244 0/1:34,10:44:99:227,0,921 0/0:65,0:66:99:0,190,2327 0/0:35,0:35:84.26:0,84,1069 0/0:47,0:47:99:0,126,1611 0/0:47,0:47:99:0,132,1639 0/0:24,0:24:69.21:0,69,841 0/1:20,19:39:99:563,0,527 0/0:31,0:31:87.26:0,87,1060 0/0:38,0:38:99:0,108,1283 0/0:30,0:30:87.25:0,87,1022 0/0:58,0:58:99:0,150,1786 0/0:44,0:44:99:0,123,1428 0/0:43,0:43:99:0,105,1282 0/0:44,0:44:99:0,123,1477 0/0:44,0:44:99:0,123,1459 0/0:60,0:60:99:0,168,1954 0/0:35,0:35:87.24:0,87,1036 0/0:35,0:35:96.29:0,96,1192 0/0:31,0:31:87.23:0,87,1005 0/0:32,0:32:84.24:0,84,1004 0/1:17,19:37:99:600,0,368 10 134151131 . G T 1263.37 . 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G A 3042.13 . 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C T 855.41 . 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T C 3639.96 . AC=2;AF=0.024;AN=84;BaseQRankSum=8.303;DP=3999;Dels=0.00;FS=4.395;HRun=0;HaplotypeScore=1.8564;InbreedingCoeff=-0.0244;MQ=59.44;MQ0=0;MQRankSum=0.169;QD=11.86;ReadPosRankSum=1.903 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,150,1856 0/0:78,0:78:99:0,214,2600 0/0:66,0:66:99:0,178,2182 0/0:210,0:210:99:0,506,6448 0/0:145,0:145:99:0,379,4818 0/1:104,82:186:99:2111,0,3067 0/1:68,53:121:99:1529,0,1950 0/0:165,0:165:99:0,412,5267 0/0:66,0:66:99:0,193,2297 0/0:80,0:80:99:0,208,2558 0/0:65,0:65:99:0,181,2186 0/0:82,0:82:99:0,232,2857 0/0:43,0:43:99:0,114,1419 0/0:61,0:61:99:0,181,2184 0/0:236,0:236:99:0,584,7290 0/0:68,0:68:99:0,190,2299 0/0:76,0:76:99:0,211,2584 0/0:65,0:65:99:0,178,2191 0/0:97,0:97:99:0,256,3148 0/0:125,0:125:99:0,325,4059 0/0:108,0:108:99:0,301,3734 0/0:82,1:83:99:0,211,2637 0/0:211,0:211:99:0,545,6973 0/0:153,0:153:99:0,406,5164 0/0:143,0:143:99:0,361,4634 0/0:146,0:146:99:0,391,4925 0/0:37,0:37:99:0,102,1247 0/0:75,0:75:99:0,196,2424 0/0:59,0:59:99:0,166,2023 0/0:69,0:69:99:0,193,2347 0/0:63,0:63:99:0,175,2169 0/0:92,0:92:99:0,244,3058 0/0:75,0:75:99:0,208,2531 0/0:58,0:58:99:0,159,1956 0/0:60,0:60:99:0,159,1969 0/0:76,0:76:99:0,205,2522 0/0:112,0:112:99:0,292,3639 0/0:56,0:57:99:0,153,1865 0/0:47,0:48:99:0,132,1633 0/0:66,0:66:99:0,187,2302 0/0:49,0:49:99:0,135,1632 0/0:68,0:69:99:0,190,2330 10 134540400 . C T 5844.01 . 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T G 247.53 . 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A G 24400.13 . 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C A 5378.32 . 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C T 1949.10 . AC=8;AF=0.095;AN=84;BaseQRankSum=-7.232;DP=782;Dels=0.00;FS=10.583;HRun=2;HaplotypeScore=0.6848;InbreedingCoeff=0.1681;MQ=58.35;MQ0=0;MQRankSum=0.128;QD=12.99;ReadPosRankSum=1.588 GT:AD:DP:GQ:PL 0/1:13,4:17:74.03:74,0,364 0/0:19,0:19:54.16:0,54,674 0/0:10,0:10:27.09:0,27,345 0/0:34,0:34:87.27:0,87,1126 0/0:29,0:29:72.23:0,72,974 0/0:18,0:18:45.14:0,45,584 0/0:30,0:30:60.20:0,60,835 0/0:27,0:27:75.24:0,75,1007 0/0:10,0:10:30.09:0,30,372 0/0:14,0:14:36.11:0,36,455 0/0:6,0:6:15.05:0,15,189 0/0:17,0:17:39.12:0,39,512 0/0:11,0:11:33.10:0,33,409 0/0:13,0:13:33.11:0,33,431 0/0:67,0:67:99:0,156,1982 0/0:12,0:12:33.09:0,33,389 0/0:13,0:13:33.10:0,33,411 0/1:10,6:16:99:137,0,295 1/1:1,26:27:60.15:741,60,0 0/1:17,17:34:99:435,0,391 0/0:23,0:23:60.17:0,60,737 0/0:15,0:15:33.11:0,33,438 0/0:53,0:53:99:0,132,1794 0/0:13,0:13:33.11:0,33,434 0/1:4,12:16:99:321,0,118 0/0:22,0:22:54.18:0,54,733 0/0:9,0:9:24.05:0,24,296 0/0:12,0:12:33.09:0,33,411 0/0:11,0:11:30.09:0,30,376 0/0:14,0:14:39.12:0,39,492 0/0:9,0:9:27.06:0,27,315 0/0:21,0:21:57.18:0,57,739 0/0:13,0:13:33.10:0,33,422 0/0:12,0:12:30.10:0,30,389 0/0:17,0:17:45.14:0,45,571 0/0:20,0:20:51.16:0,51,664 0/1:22,5:27:87.31:87,0,616 0/0:9,0:9:21.07:0,21,278 0/1:3,10:13:76.45:281,0,76 0/0:8,0:8:24.07:0,24,281 0/0:7,0:7:21.07:0,21,257 0/0:14,0:14:42.13:0,42,517 10 134649709 . C T 672.78 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.911;DP=1378;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.0388;InbreedingCoeff=-0.0244;MQ=58.38;MQ0=0;MQRankSum=-0.281;QD=16.41;ReadPosRankSum=0.281 GT:AD:DP:GQ:PL 0/0:33,0:33:96.24:0,96,1093 0/0:34,0:34:93.23:0,93,1084 0/0:29,0:29:78.23:0,78,937 0/0:65,0:65:99:0,166,2092 0/0:52,0:52:99:0,138,1724 0/0:49,0:49:99:0,135,1704 0/0:34,0:34:84.26:0,84,1103 0/0:40,0:40:99:0,102,1316 0/0:34,0:34:90.24:0,90,1043 0/0:26,0:26:57.16:0,57,714 0/0:23,0:23:69.15:0,69,779 0/1:11,15:26:99:457,0,252 0/1:4,11:15:99:278,0,100 0/0:29,0:29:84.22:0,84,975 0/0:100,0:100:99:0,256,3038 0/0:33,0:33:87.24:0,87,1019 0/0:34,0:34:90.22:0,90,1054 0/0:27,0:27:72.16:0,72,838 0/0:40,0:40:96.24:0,96,1123 0/0:49,0:49:99:0,132,1549 0/0:37,0:37:93.27:0,93,1094 0/0:27,0:27:72.18:0,72,822 0/0:56,0:56:99:0,144,1834 0/0:18,0:18:45.14:0,45,599 0/0:35,0:35:90.29:0,90,1165 0/0:26,0:26:78.23:0,78,966 0/0:20,0:20:54.15:0,54,626 0/0:21,0:21:60.16:0,60,694 0/0:22,0:22:57.17:0,57,705 0/0:24,0:24:69.19:0,69,807 0/0:26,0:26:78.22:0,78,905 0/0:41,0:41:99:0,108,1267 0/0:23,0:23:63.18:0,63,736 0/0:13,0:13:39.11:0,39,459 0/0:29,0:29:78.23:0,78,938 0/0:27,0:27:78.22:0,78,902 0/0:49,0:49:99:0,138,1550 0/0:28,0:28:81.19:0,81,930 0/0:14,0:14:42.11:0,42,488 0/0:27,0:27:75.18:0,75,836 0/0:21,0:21:57.14:0,57,649 0/0:22,0:22:60.16:0,60,682 10 134659573 . G A 69.77 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.573;DP=417;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5671;InbreedingCoeff=-0.0491;MQ=53.47;MQ0=1;MQRankSum=1.759;QD=4.65;ReadPosRankSum=2.052 GT:AD:DP:GQ:PL 0/0:10,0:10:15.04:0,15,166 0/0:10,0:10:30.07:0,30,325 0/0:6,0:6:15.04:0,15,178 0/0:31,0:31:84.23:0,84,962 0/0:23,0:23:60.12:0,60,687 0/0:16,0:16:39.11:0,39,468 0/1:4,2:6:26.23:26,0,59 0/0:9,0:9:27.08:0,27,326 0/1:2,2:4:52.91:59,0,53 0/1:2,3:5:43.26:59,0,43 0/0:5,0:5:9.02:0,9,96 0/0:4,0:4:12.02:0,12,124 0/0:6,0:6:18.04:0,18,194 0/0:8,0:8:24.07:0,24,274 0/0:21,0:22:48.12:0,48,554 0/0:9,0:9:24.06:0,24,265 0/0:10,0:10:30.07:0,30,335 0/0:9,0:9:27.07:0,27,302 0/0:13,0:13:21.06:0,21,252 0/0:13,0:13:30.09:0,30,352 0/0:11,0:11:21.05:0,21,227 0/0:9,0:9:24.06:0,24,272 0/0:24,0:24:60.17:0,60,696 0/0:7,0:7:18.05:0,18,198 0/0:20,0:20:54.15:0,54,625 0/0:11,0:11:27.07:0,27,313 0/0:9,0:9:21.06:0,21,245 0/0:10,0:10:27.08:0,27,329 0/0:4,0:4:12.02:0,12,126 0/0:9,0:9:27.07:0,27,294 0/0:6,0:6:15.04:0,15,177 0/0:2,0:2:6.01:0,6,63 0/0:15,0:15:42.06:0,42,429 0/0:9,0:9:27.07:0,27,301 0/0:4,0:4:12.03:0,12,133 0/0:6,0:6:12.02:0,12,119 0/0:4,0:4:9.02:0,9,102 0/0:10,0:10:24.04:0,24,275 0/0:7,0:7:21.06:0,21,233 0/0:8,0:8:15.04:0,15,181 0/0:7,0:7:15.03:0,15,156 0/0:6,0:6:15.04:0,15,172 10 134659575 . C G 340.77 . AC=18;AF=0.214;AN=84;BaseQRankSum=-5.711;DP=361;Dels=0.00;FS=226.640;HRun=2;HaplotypeScore=0.5034;InbreedingCoeff=-0.3152;MQ=57.16;MQ0=1;MQRankSum=0.168;QD=2.13;ReadPosRankSum=-6.675 GT:AD:DP:GQ:PL 0/1:4,1:5:19.31:19,0,127 0/0:4,2:6:9.02:0,9,100 0/0:5,0:5:12.04:0,12,147 0/0:20,13:33:49.39:0,49,557 0/0:10,9:19:2.77:1,0,313 0/0:8,4:12:18.94:0,19,229 0/0:4,2:6:12.03:0,12,125 0/0:6,4:10:15.05:0,15,206 0/1:2,1:3:15.67:16,0,62 0/0:2,2:4:3:0,3,29 0/0:3,2:5:3.01:0,3,35 0/0:2,1:3:6.01:0,6,64 0/1:3,1:4:24.09:24,0,95 0/1:3,4:7:81.23:81,0,92 0/0:17,4:21:12.63:0,13,470 0/1:8,3:11:4.47:4,0,267 0/0:3,1:4:9.03:0,9,115 0/0:4,2:6:12.04:0,12,147 0/1:10,2:12:6.04:6,0,294 0/1:9,3:12:10.28:10,0,237 0/0:8,2:10:15.04:0,15,177 0/0:7,1:8:21.06:0,21,245 0/1:20,8:28:17.79:18,0,499 0/1:1,3:4:25.53:26,0,32 0/1:13,4:17:29.70:30,0,416 0/0:7,3:10:15.05:0,15,193 0/0:6,0:6:15.04:0,15,185 0/1:6,2:8:18.20:18,0,149 0/1:1,2:3:28.33:28,0,32 0/1:6,2:8:8.56:9,0,198 0/1:3,2:5:17.58:18,0,72 0/0:1,0:1:3.01:0,3,42 0/1:6,6:12:36.13:36,0,189 0/1:5,3:8:18.92:19,0,167 0/0:3,0:3:6.01:0,6,64 0/1:2,4:6:46.23:46,0,53 0/0:5,0:5:9.02:0,9,100 0/0:7,2:9:21.03:0,21,231 0/0:3,3:6:9.03:0,9,113 0/0:4,0:4:9.03:0,9,113 0/1:2,5:7:54.52:85,0,55 0/0:4,1:5:12.04:0,12,145 10 134659612 . G A 191.22 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.037;DP=544;Dels=0.00;FS=3.179;HRun=0;HaplotypeScore=0.6577;InbreedingCoeff=-0.0185;MQ=57.03;MQ0=0;MQRankSum=0.968;QD=8.31;ReadPosRankSum=-0.836 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,77 0/0:9,0:10:27.07:0,27,324 0/0:11,0:11:30.08:0,30,354 0/0:37,0:37:99:0,105,1334 0/0:27,0:27:72.23:0,72,946 0/0:18,0:18:51.17:0,51,674 0/0:7,0:7:21.06:0,21,262 0/0:13,0:13:39.13:0,39,504 0/0:5,0:5:15.05:0,15,194 0/0:5,0:5:12.03:0,12,137 0/0:7,0:7:21.06:0,21,260 0/0:5,0:5:15.04:0,15,175 0/0:3,0:3:9.03:0,9,111 0/0:8,0:8:24.08:0,24,303 0/0:27,0:28:72.21:0,72,874 0/0:10,0:10:24.07:0,24,287 0/0:6,0:6:18.06:0,18,222 0/0:9,0:9:27.08:0,27,327 0/0:16,0:16:45.14:0,45,555 0/1:12,11:23:99:237,0,283 0/0:20,0:21:39.12:0,39,478 0/0:13,0:13:39.12:0,39,474 0/0:39,0:39:99:0,114,1477 0/0:14,0:14:39.12:0,39,507 0/0:22,0:22:63.20:0,63,804 0/0:15,0:15:42.12:0,42,529 0/0:7,0:8:21.07:0,21,267 0/0:9,0:9:27.09:0,27,342 0/0:9,0:9:24.07:0,24,295 0/0:15,0:15:42.12:0,42,510 0/0:12,0:12:33.08:0,33,387 0/0:14,0:14:36.12:0,36,462 0/0:8,0:8:24.07:0,24,287 0/0:16,0:16:42.13:0,42,526 0/0:6,0:6:18.05:0,18,217 0/0:11,0:11:33.11:0,33,420 0/0:10,0:10:30.09:0,30,372 0/0:9,0:9:27.07:0,27,319 0/0:13,0:13:36.11:0,36,446 0/0:14,0:14:39.10:0,39,451 0/0:9,0:9:27.06:0,27,314 0/0:7,0:7:21.07:0,21,263 10 134659626 . A G 248.17 . AC=5;AF=0.060;AN=84;BaseQRankSum=0.619;DP=554;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5361;InbreedingCoeff=-0.0843;MQ=57.13;MQ0=0;MQRankSum=1.037;QD=6.53;ReadPosRankSum=2.412 GT:AD:DP:GQ:PL 0/0:3,0:3:9.03:0,9,107 0/0:8,0:8:24.05:0,24,260 0/0:11,0:11:27.07:0,27,319 0/0:32,1:34:96.26:0,96,1094 0/0:30,0:30:81.20:0,81,944 0/0:16,0:16:39.09:0,39,441 0/1:6,2:8:51.49:51,0,187 0/1:8,4:12:99:107,0,248 0/1:4,2:6:52.24:52,0,131 0/1:3,1:4:20.47:20,0,92 0/0:5,0:6:15.04:0,15,171 0/0:5,1:6:15.04:0,15,173 0/0:2,0:2:5.99:0,6,58 0/0:9,0:9:27.03:0,27,275 0/0:21,0:21:57.14:0,57,645 0/0:10,0:10:30.08:0,30,343 0/0:6,0:6:15.05:0,15,186 0/0:8,0:8:21.06:0,21,252 0/0:13,0:13:39.12:0,39,468 0/0:22,0:22:57.12:0,57,660 0/0:19,0:19:48.12:0,48,552 0/0:12,0:12:33.07:0,33,380 0/0:48,0:48:99:0,144,1654 0/0:17,0:17:42.11:0,42,490 0/0:29,0:29:84.21:0,84,943 0/0:13,1:14:2.96:0,3,366 0/0:7,0:7:21.06:0,21,242 0/1:4,4:8:99:111,0,116 0/0:12,0:12:33.07:0,33,384 0/0:16,0:16:42.09:0,42,476 0/0:11,0:11:30.07:0,30,328 0/0:14,0:14:36.09:0,36,433 0/0:9,0:9:24.06:0,24,275 0/0:17,0:17:39.10:0,39,450 0/0:7,0:7:21.06:0,21,245 0/0:17,0:17:48.13:0,48,561 0/0:8,0:9:24.07:0,24,282 0/0:8,0:8:24.07:0,24,279 0/0:13,0:13:39.10:0,39,441 0/0:14,0:14:39.07:0,39,419 0/0:10,1:11:1.27:5,0,320 0/0:7,0:7:21.04:0,21,243 10 134996869 . G T 83.13 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.999;DP=327;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0827;InbreedingCoeff=-0.0386;MQ=58.59;MQ0=0;MQRankSum=-0.613;QD=11.88;ReadPosRankSum=2.094 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,184 0/0:7,0:7:21.05:0,21,251 0/0:4,0:4:12.04:0,12,156 0/0:12,0:12:33.10:0,33,427 0/0:18,0:18:51.15:0,51,664 0/0:8,0:8:21.06:0,21,271 0/0:9,0:9:21.07:0,21,281 0/0:12,0:12:36.11:0,36,457 0/0:8,0:8:18.06:0,18,232 0/0:4,0:4:9.02:0,9,99 0/0:3,0:3:9.02:0,9,99 0/0:4,0:4:12.04:0,12,153 0/0:7,0:7:18.05:0,18,215 0/0:6,0:6:12.04:0,12,158 0/0:17,0:17:45.13:0,45,557 0/0:8,0:8:21.06:0,21,256 0/0:10,0:10:27.08:0,27,340 0/1:3,4:7:66.03:129,0,66 0/0:3,0:3:9.03:0,9,112 0/0:15,0:15:39.12:0,39,481 0/0:10,0:10:30.09:0,30,368 0/0:6,0:6:18.06:0,18,223 0/0:10,0:10:27.09:0,27,372 0/0:8,0:8:21.03:0,21,223 0/0:12,0:12:33.11:0,33,430 0/0:10,0:10:24.08:0,24,320 0/0:8,0:8:24.04:0,24,263 0/0:8,0:8:18.06:0,18,238 0/0:6,0:6:18.05:0,18,217 0/0:3,0:3:9.02:0,9,102 0/0:5,0:5:15.03:0,15,171 0/0:6,0:6:18.06:0,18,222 0/0:10,1:11:0.62:8,0,261 0/0:5,0:5:12.04:0,12,159 0/0:7,0:7:21.06:0,21,254 0/0:7,0:7:21.07:0,21,264 0/0:10,0:10:24.08:0,24,315 0/0:6,0:6:18.06:0,18,227 0/0:3,0:3:9.03:0,9,111 0/0:8,0:8:21.06:0,21,262 0/0:2,0:2:6.02:0,6,75 0/0:9,0:9:18.03:0,18,216 10 134996883 . C A 8.94 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.260;DP=341;Dels=0.00;FS=2.978;HRun=0;HaplotypeScore=0.3231;InbreedingCoeff=-0.0251;MQ=58.61;MQ0=0;MQRankSum=-1.615;QD=1.79;ReadPosRankSum=-0.428 GT:AD:DP:GQ:PL 0/0:8,0:8:24.03:0,24,249 0/0:6,0:6:18.05:0,18,210 0/0:5,0:5:15.05:0,15,185 0/0:16,0:16:42.13:0,42,528 0/0:17,0:17:45.14:0,45,557 0/0:11,0:11:30.09:0,30,372 0/0:5,0:5:15.05:0,15,196 0/0:12,0:12:36.11:0,36,439 0/0:10,0:10:27.07:0,27,307 0/0:2,0:2:6.02:0,6,72 0/0:3,0:3:9.03:0,9,109 0/0:4,0:4:12.03:0,12,137 0/0:5,0:5:15.04:0,15,176 0/0:6,0:6:15.04:0,15,180 0/0:16,0:16:42.12:0,42,505 0/0:7,0:7:18.06:0,18,229 0/0:8,0:8:21.06:0,21,249 0/0:7,0:8:18.05:0,18,217 0/1:3,2:5:54.44:54,0,81 0/0:14,0:14:39.11:0,39,467 0/0:11,0:11:33.09:0,33,377 0/0:7,0:7:21.06:0,21,246 0/0:12,0:12:36.11:0,36,453 0/0:6,0:6:15.05:0,15,194 0/0:13,0:13:30.09:0,30,377 0/0:9,0:9:27.08:0,27,319 0/0:11,0:11:27.07:0,27,300 0/0:9,0:9:24.07:0,24,288 0/0:3,0:3:9.02:0,9,97 0/0:6,0:6:18.05:0,18,204 0/0:3,0:3:9.03:0,9,105 0/0:5,0:5:12.02:0,12,125 0/0:14,0:14:33.10:0,33,403 0/0:5,0:5:15.05:0,15,182 0/0:8,0:8:24.06:0,24,265 0/0:6,0:6:18.05:0,18,202 0/0:11,0:11:27.05:0,27,325 0/0:8,0:8:24.06:0,24,271 0/0:6,0:6:15.05:0,15,184 0/0:9,0:9:27.08:0,27,320 0/0:4,0:4:12.02:0,12,125 0/0:7,0:7:21.03:0,21,224 10 134996950 . A G 18.17 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.011;DP=525;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.4619;InbreedingCoeff=-0.0183;MQ=59.09;MQ0=0;MQRankSum=-0.246;QD=3.03;ReadPosRankSum=0.131 GT:AD:DP:GQ:PL 0/0:12,0:12:27.09:0,27,350 0/0:7,0:7:21.06:0,21,255 0/0:7,0:7:18.05:0,18,208 0/0:24,0:24:57.18:0,57,730 0/0:31,0:31:81.26:0,81,1041 0/0:23,0:23:57.18:0,57,730 0/0:7,0:7:21.06:0,21,256 0/0:14,0:14:36.11:0,36,461 0/0:10,0:10:27.09:0,27,338 0/0:12,0:12:30.09:0,30,382 0/0:3,0:3:9.02:0,9,103 0/0:7,0:7:15.05:0,15,192 0/0:11,0:11:27.08:0,27,344 0/0:14,0:15:42.13:0,42,517 0/0:33,0:33:78.25:0,78,1013 0/0:13,0:13:39.11:0,39,467 0/0:13,0:13:30.09:0,30,388 0/1:4,2:6:64.26:64,0,64 0/0:11,0:11:30.09:0,30,369 0/0:32,0:32:72.23:0,72,922 0/0:11,0:11:30.09:0,30,363 0/0:10,0:10:24.08:0,24,309 0/0:19,0:19:51.15:0,51,622 0/0:15,0:15:39.12:0,39,489 0/0:26,0:26:63.20:0,63,808 0/0:13,0:13:36.11:0,36,443 0/0:4,0:4:12.04:0,12,141 0/0:8,0:8:18.05:0,18,218 0/0:8,0:8:21.07:0,21,271 0/0:6,0:6:18.05:0,18,211 0/0:5,0:5:15.05:0,15,186 0/0:14,0:14:33.10:0,33,417 0/0:13,0:13:36.10:0,36,434 0/0:4,0:4:9.03:0,9,118 0/0:5,0:5:15.05:0,15,183 0/0:9,0:9:21.07:0,21,267 0/0:16,0:16:36.11:0,36,465 0/0:14,0:14:36.11:0,36,458 0/0:7,0:7:21.07:0,21,258 0/0:10,0:10:27.08:0,27,331 0/0:7,0:7:15.05:0,15,201 0/0:10,0:10:27.09:0,27,343 10 134996954 . G A 11.66 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.490;DP=527;Dels=0.00;FS=2.349;HRun=0;HaplotypeScore=0.4863;InbreedingCoeff=-0.0181;MQ=59.12;MQ0=0;MQRankSum=-0.110;QD=1.94;ReadPosRankSum=-0.936 GT:AD:DP:GQ:PL 0/0:10,0:10:21.07:0,21,275 0/0:6,0:6:15.05:0,15,188 0/0:8,0:8:24.06:0,24,273 0/0:26,0:26:66.20:0,66,819 0/0:31,0:31:78.25:0,78,1024 0/0:21,1:22:21.92:0,22,658 0/0:8,0:8:21.06:0,21,259 0/0:14,0:14:36.11:0,36,467 0/0:10,0:10:27.08:0,27,316 0/0:12,0:12:30.08:0,30,363 0/0:5,0:5:15.04:0,15,165 0/0:7,0:7:15.03:0,15,180 0/0:10,0:10:27.08:0,27,334 0/0:16,0:16:39.12:0,39,482 0/0:30,0:30:69.21:0,69,881 0/0:14,0:14:42.11:0,42,480 0/0:13,0:13:33.10:0,33,402 0/1:4,2:6:57.51:58,0,118 0/0:11,0:11:27.08:0,27,331 0/0:31,0:32:72.23:0,72,932 0/0:11,0:11:27.06:0,27,319 0/0:10,0:10:24.07:0,24,306 0/0:20,0:20:54.17:0,54,688 0/0:16,0:16:42.13:0,42,540 0/0:29,0:29:75.22:0,75,937 0/0:14,0:14:39.12:0,39,481 0/0:3,0:3:9.03:0,9,107 0/0:7,0:7:21.06:0,21,240 0/0:7,0:7:18.06:0,18,226 0/0:5,0:5:15.04:0,15,170 0/0:5,0:5:15.04:0,15,170 0/0:13,0:13:30.08:0,30,364 0/0:10,0:10:27.08:0,27,320 0/0:4,0:4:9.03:0,9,112 0/0:6,0:6:18.05:0,18,219 0/0:9,0:9:18.05:0,18,227 0/0:18,0:18:45.13:0,45,549 0/0:14,0:14:36.10:0,36,439 0/0:8,0:8:24.05:0,24,253 0/0:9,0:9:24.07:0,24,286 0/0:8,0:8:18.06:0,18,233 0/0:10,0:10:27.08:0,27,332 10 135020835 . C G 266.46 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.917;DP=814;Dels=0.00;FS=1.239;HRun=0;HaplotypeScore=0.4887;InbreedingCoeff=-0.0132;MQ=59.26;MQ0=0;MQRankSum=1.670;QD=15.67;ReadPosRankSum=-2.193 GT:AD:DP:GQ:PL 0/0:11,0:11:33.10:0,33,414 0/0:19,0:19:51.15:0,51,641 0/0:10,0:10:24.07:0,24,300 0/0:68,0:68:99:0,187,2537 0/0:57,0:57:99:0,160,2150 0/0:34,0:34:93.29:0,93,1227 0/0:26,0:26:69.23:0,69,955 0/0:35,0:35:99:0,105,1407 0/0:14,0:14:42.13:0,42,521 0/0:8,0:8:24.08:0,24,301 0/0:17,0:17:48.15:0,48,601 0/0:16,0:16:39.11:0,39,497 0/0:7,0:7:21.05:0,21,258 0/0:10,0:10:30.10:0,30,384 0/0:36,0:36:96.30:0,96,1209 0/0:16,0:16:48.14:0,48,587 0/0:9,0:9:27.09:0,27,350 0/1:6,11:17:99:313,0,177 0/0:23,0:23:57.18:0,57,731 0/0:18,0:18:42.14:0,42,568 0/0:16,0:16:42.13:0,42,531 0/0:17,0:17:48.15:0,48,615 0/0:46,1:47:90.85:0,91,1700 0/0:30,0:30:87.28:0,87,1161 0/0:33,0:33:90.28:0,90,1196 0/0:22,0:22:63.21:0,63,860 0/0:7,0:7:21.07:0,21,262 0/0:12,0:12:33.10:0,33,412 0/0:13,0:13:39.12:0,39,489 0/0:10,0:10:24.08:0,24,307 0/0:10,0:10:30.10:0,30,380 0/0:20,0:20:51.16:0,51,652 0/0:14,0:14:39.12:0,39,493 0/0:6,0:6:12.04:0,12,160 0/0:11,0:11:33.10:0,33,409 0/0:15,0:15:42.13:0,42,530 0/0:20,0:20:57.17:0,57,692 0/0:16,0:16:42.12:0,42,525 0/0:11,0:11:30.09:0,30,365 0/0:15,0:15:42.13:0,42,531 0/0:9,0:9:27.09:0,27,339 0/0:9,0:9:27.08:0,27,330 10 135051425 . C T 255.66 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.311;DP=455;Dels=0.00;FS=7.390;HRun=1;HaplotypeScore=0.4111;InbreedingCoeff=-0.0344;MQ=58.12;MQ0=0;MQRankSum=1.949;QD=17.04;ReadPosRankSum=-0.649 GT:AD:DP:GQ:PL 0/0:7,0:7:18.06:0,18,227 0/0:6,0:6:15.05:0,15,193 0/0:3,0:3:9.03:0,9,116 0/0:31,0:31:72.22:0,72,966 0/0:25,0:25:63.19:0,63,821 0/1:3,6:9:65.46:183,0,65 0/1:2,4:6:60.30:135,0,60 0/0:16,0:16:45.13:0,45,554 0/0:7,0:7:18.06:0,18,223 0/0:4,0:4:9.03:0,9,113 0/0:8,0:8:21.07:0,21,264 0/0:7,0:7:18.06:0,18,234 0/0:6,0:6:12.04:0,12,151 0/0:7,0:7:21.06:0,21,247 0/0:36,0:36:93.27:0,93,1174 0/0:12,0:12:33.10:0,33,415 0/0:8,0:8:21.07:0,21,274 0/0:6,0:6:15.05:0,15,187 0/0:21,0:21:45.15:0,45,604 0/0:12,0:12:27.08:0,27,346 0/0:13,0:13:33.08:0,33,391 0/0:10,0:10:24.07:0,24,296 0/0:24,0:24:54.18:0,54,743 0/0:10,0:10:21.07:0,21,293 0/0:13,0:13:30.10:0,30,414 0/0:17,0:17:45.13:0,45,564 0/0:4,0:4:12.03:0,12,145 0/0:6,0:6:15.05:0,15,188 0/0:5,0:5:12.04:0,12,150 0/0:8,0:8:21.07:0,21,269 0/0:11,0:11:30.09:0,30,377 0/0:12,0:12:33.07:0,33,379 0/0:14,0:14:36.11:0,36,459 0/0:11,0:11:33.10:0,33,395 0/0:3,0:3:9.03:0,9,108 0/0:7,0:7:18.06:0,18,233 0/0:11,0:11:33.10:0,33,413 0/0:9,0:9:24.08:0,24,305 0/0:12,0:12:30.09:0,30,371 0/0:6,0:6:18.05:0,18,217 0/0:4,0:4:12.04:0,12,148 0/0:8,0:8:24.08:0,24,304 10 135051519 . C G 44.18 . AC=1;AF=0.013;AN=80;BaseQRankSum=-0.384;DP=336;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3411;InbreedingCoeff=-0.0357;MQ=56.55;MQ0=1;MQRankSum=-0.906;QD=6.31;ReadPosRankSum=-0.254 GT:AD:DP:GQ:PL 0/0:6,0:6:15.05:0,15,185 0/1:3,4:7:89.95:90,0,97 ./. 0/0:20,0:20:48.15:0,48,614 0/0:24,0:24:69.17:0,69,847 0/0:11,0:11:30.10:0,30,401 0/0:10,0:10:27.09:0,27,357 0/0:14,0:14:33.10:0,33,424 0/0:4,0:4:12.04:0,12,147 0/0:2,0:2:6.01:0,6,62 0/0:2,0:2:6.02:0,6,70 0/0:8,0:8:21.06:0,21,253 0/0:3,0:3:6.01:0,6,66 0/0:3,0:3:9.03:0,9,105 0/0:21,0:22:54.15:0,54,634 0/0:8,0:8:21.06:0,21,251 0/0:4,0:4:12.04:0,12,144 ./. 0/0:6,0:6:15.03:0,15,173 0/0:5,0:5:12.04:0,12,148 0/0:16,0:16:42.13:0,42,509 0/0:10,0:10:27.09:0,27,349 0/0:16,0:16:45.12:0,45,565 0/0:8,0:8:21.07:0,21,280 0/0:6,0:6:15.04:0,15,184 0/0:6,0:6:15.03:0,15,179 0/0:4,0:4:9.03:0,9,121 0/0:7,0:7:15.05:0,15,193 0/0:5,0:5:12.03:0,12,144 0/0:9,0:9:21.06:0,21,258 0/0:6,0:6:18.05:0,18,217 0/0:6,0:6:18.06:0,18,227 0/0:11,0:11:30.09:0,30,372 0/0:13,0:13:36.11:0,36,443 0/0:2,0:2:6.01:0,6,66 0/0:5,0:5:15.05:0,15,187 0/0:15,0:15:36.09:0,36,422 0/0:3,0:3:9.02:0,9,101 0/0:7,0:7:18.05:0,18,212 0/0:10,0:10:27.08:0,27,321 0/0:3,0:3:9.03:0,9,106 0/0:8,0:8:21.06:0,21,258 10 135051543 . T C 367.57 . AC=5;AF=0.061;AN=82;BaseQRankSum=-1.789;DP=338;Dels=0.00;FS=4.985;HRun=3;HaplotypeScore=0.4051;InbreedingCoeff=-0.0835;MQ=57.43;MQ0=0;MQRankSum=-2.759;QD=9.42;ReadPosRankSum=-0.289 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,288 0/0:10,0:10:27.05:0,27,306 0/0:4,0:4:9.01:0,9,98 0/0:20,0:20:54.16:0,54,650 0/0:26,0:26:72.18:0,72,857 0/0:10,0:10:30.09:0,30,377 0/0:12,0:12:30.09:0,30,384 0/0:12,0:12:33.10:0,33,401 0/0:5,0:5:15.05:0,15,179 0/0:1,0:1:3.01:0,3,37 0/0:4,0:4:12.03:0,12,140 0/0:5,0:5:12.04:0,12,145 ./. 0/0:6,0:6:18.05:0,18,213 0/1:11,10:21:99:208,0,329 0/0:8,1:9:21.06:0,21,253 0/1:2,1:3:12.67:13,0,57 0/0:4,0:4:12.04:0,12,146 0/0:5,1:7:12.04:0,12,145 0/0:4,0:4:12.03:0,12,134 0/0:9,0:10:24.08:0,24,312 0/0:8,0:8:18.05:0,18,207 0/0:17,0:17:45.12:0,45,548 0/0:5,0:5:12.04:0,12,153 0/0:9,0:9:21.06:0,21,248 0/0:4,0:4:12.04:0,12,148 0/0:2,0:2:6.01:0,6,64 0/1:1,4:5:26.54:95,0,27 0/0:6,0:6:18.03:0,18,199 0/0:6,0:6:18.05:0,18,219 0/0:8,0:8:21.06:0,21,257 0/0:9,0:9:21.04:0,21,242 0/0:8,0:8:24.07:0,24,292 0/0:14,0:14:42.10:0,42,482 0/0:3,0:3:6.02:0,6,68 0/0:6,0:6:18.05:0,18,214 0/0:17,0:17:39.10:0,39,474 0/0:5,0:5:12.03:0,12,137 0/0:6,0:6:15.04:0,15,176 0/0:9,0:9:24.07:0,24,293 0/1:2,2:4:24.41:63,0,24 0/1:3,3:6:82.25:82,0,92 10 135051562 . A G 4809.41 . AC=53;AF=0.631;AN=84;BaseQRankSum=-4.054;DP=298;Dels=0.00;FS=14.130;HRun=2;HaplotypeScore=0.2544;InbreedingCoeff=-0.0166;MQ=57.46;MQ0=0;MQRankSum=-0.848;QD=19.55;ReadPosRankSum=-0.914 GT:AD:DP:GQ:PL 1/1:0,8:8:24.07:278,24,0 1/1:0,6:6:18.05:205,18,0 0/1:1,3:4:27.97:100,0,28 0/1:15,6:21:99:161,0,464 0/0:18,0:18:51.16:0,51,640 0/1:3,9:12:45.19:278,0,45 0/1:7,4:11:99:109,0,195 0/1:4,4:8:99:109,0,99 1/1:0,5:5:12.03:136,12,0 0/1:0,1:1:1.76:36,3,0 0/1:2,2:4:55.54:56,0,56 1/1:0,4:4:12.03:128,12,0 1/1:0,2:2:6.02:64,6,0 0/1:4,2:6:49.94:50,0,94 0/1:8,10:19:99:212,0,244 0/1:5,3:8:68.63:69,0,161 1/1:0,3:3:9.02:106,9,0 1/1:0,3:3:9.02:98,9,0 1/1:0,8:8:18.04:204,18,0 0/1:2,4:6:58.32:125,0,58 1/1:0,7:7:18.05:211,18,0 0/1:2,3:5:18.56:101,0,19 0/1:9,10:19:99:207,0,263 1/1:0,5:5:12.04:139,12,0 0/1:5,4:9:84.63:123,0,85 0/0:3,0:3:9.03:0,9,116 1/1:0,5:5:15.04:172,15,0 1/1:0,2:2:3.01:37,3,0 0/1:4,1:5:21.40:21,0,91 1/1:0,5:5:15.03:166,15,0 1/1:0,3:3:9.03:101,9,0 1/1:0,11:11:33.09:365,33,0 1/1:0,3:3:9:91,9,0 0/0:9,0:9:27.08:0,27,329 0/1:3,1:4:20.46:20,0,99 0/0:4,0:4:12.03:0,12,131 0/0:14,0:14:36.11:0,36,439 0/0:2,2:4:6.02:0,6,66 0/1:3,2:5:43.16:43,0,83 0/1:2,6:8:36.76:181,0,37 0/1:2,2:4:24.41:61,0,24 1/1:0,7:7:21.06:246,21,0 10 135051653 . A G 325.30 . 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G A 57.03 . AC=1;AF=0.014;AN=72;BaseQRankSum=1.579;DP=99;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3027;InbreedingCoeff=-0.1103;MQ=57.13;MQ0=0;MQRankSum=-1.579;QD=14.26;ReadPosRankSum=2.022 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,69 0/0:4,0:4:9.03:0,9,121 0/0:3,0:3:9.03:0,9,105 0/0:3,0:3:6.02:0,6,80 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,34 ./. 0/0:3,0:3:6.01:0,6,64 0/0:2,0:2:3.01:0,3,38 0/0:4,0:4:12.03:0,12,133 0/0:3,0:3:6.02:0,6,83 0/0:3,0:3:9.02:0,9,99 0/0:1,0:1:3.01:0,3,36 0/0:2,0:2:6.02:0,6,72 0/0:3,0:3:6.02:0,6,76 0/0:5,0:5:15.03:0,15,161 0/0:4,0:4:9.03:0,9,114 0/0:3,0:3:9.03:0,9,106 0/0:3,0:3:9.02:0,9,100 0/0:3,0:3:9.02:0,9,103 0/0:4,0:4:12.03:0,12,134 0/0:5,0:5:15.04:0,15,173 ./. ./. ./. ./. 0/0:3,0:3:9.02:0,9,95 0/0:2,0:2:6.02:0,6,68 0/0:3,0:3:6.01:0,6,57 0/0:2,0:2:3.01:0,3,39 0/0:4,0:4:12.03:0,12,132 0/0:2,0:2:6.02:0,6,76 0/0:3,0:3:6.02:0,6,64 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:3.01:0,3,37 0/0:2,0:2:6.02:0,6,76 0/1:1,3:4:15.63:101,0,16 0/0:2,0:2:3.01:0,3,45 ./. 0/0:3,0:3:6.02:0,6,76 0/0:2,0:2:6.02:0,6,73 0/0:2,0:2:6.01:0,6,60 10 135061112 . C T 1393.71 . AC=47;AF=0.810;AN=58;BaseQRankSum=3.944;DP=76;Dels=0.00;FS=4.844;HRun=0;HaplotypeScore=0.4472;InbreedingCoeff=0.3143;MQ=57.77;MQ0=0;MQRankSum=1.921;QD=22.48;ReadPosRankSum=0.625 GT:AD:DP:GQ:PL 1/1:0,1:2:3.01:31,3,0 1/1:0,3:3:9.03:113,9,0 ./. 1/1:0,1:2:3.01:38,3,0 1/1:0,1:1:3.01:35,3,0 ./. ./. 1/1:0,1:1:3.01:35,3,0 1/1:0,1:1:3.01:34,3,0 ./. 1/1:0,3:4:9.03:107,9,0 1/1:0,1:2:3.01:36,3,0 ./. 1/1:0,1:1:3.01:37,3,0 0/1:2,2:4:50.05:58,0,50 0/1:1,0:5:1.76:0,3,30 1/1:0,2:3:6.02:70,6,0 1/1:0,3:4:9.03:103,9,0 0/0:3,0:3:9.02:0,9,94 0/0:1,0:2:3.01:0,3,32 1/1:0,2:3:6.02:73,6,0 1/1:0,5:6:15.02:171,15,0 ./. ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,32 0/1:1,0:1:1.76:0,3,32 1/1:0,3:3:9.03:105,9,0 1/1:0,1:3:3.01:36,3,0 1/1:0,1:1:3.01:38,3,0 ./. 1/1:0,2:2:6.02:68,6,0 0/0:1,0:2:3.01:0,3,33 1/1:0,2:2:6.02:70,6,0 1/1:0,4:4:12.04:140,12,0 1/1:0,1:1:3.01:37,3,0 ./. 1/1:0,1:2:3.01:38,3,0 1/1:0,1:1:3.01:37,3,0 ./. 10 135084005 . CAT C 822.38 . AC=1;AF=0.012;AN=84;BaseQRankSum=6.319;DP=2559;FS=1.732;HRun=0;HaplotypeScore=184.5757;InbreedingCoeff=-0.0120;MQ=58.93;MQ0=0;MQRankSum=3.787;QD=13.94;ReadPosRankSum=-0.340 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,162,3131 0/0:51,0:51:99:0,150,2900 0/0:46,0:45:99:0,135,2573 0/0:140,0:139:99:0,415,8179 0/0:123,0:123:99:0,367,7219 0/0:86,0:85:99:0,256,5136 0/0:73,0:69:99:0,220,4244 0/0:66,0:65:99:0,193,3841 0/0:52,0:52:99:0,157,2961 0/0:49,0:49:99:0,144,2843 0/0:39,0:39:99:0,117,2228 0/0:43,0:43:99:0,129,2467 0/0:36,0:36:99:0,105,2070 0/0:46,0:46:99:0,138,2713 0/0:128,0:128:99:0,382,7522 0/0:65,0:65:99:0,193,3645 0/0:43,0:43:99:0,126,2375 0/0:34,0:34:99:0,102,1940 0/0:80,0:80:99:0,235,4577 0/0:95,0:95:99:0,278,5286 0/0:73,0:73:99:0,217,4208 0/1:35,24:59:99:878,0,1857 0/0:137,0:137:99:0,409,7965 0/0:58,0:55:99:0,175,3460 0/0:79,0:79:99:0,232,4529 0/0:60,0:60:99:0,178,3532 0/0:28,0:28:84.29:0,84,1706 0/0:46,0:46:99:0,138,2646 0/0:32,0:32:87.30:0,87,1768 0/0:46,0:46:99:0,135,2712 0/0:47,0:47:99:0,141,2796 0/0:87,0:87:99:0,256,5086 0/0:58,0:58:99:0,169,3298 0/0:32,0:32:96.28:0,96,1847 0/0:46,0:46:99:0,138,2713 0/0:38,0:38:99:0,108,2128 0/0:81,0:81:99:0,229,4497 0/0:59,0:59:99:0,178,3436 0/0:43,0:43:99:0,129,2531 0/0:35,0:35:99:0,105,2047 0/0:30,0:30:90.28:0,90,1644 0/0:35,0:35:99:0,105,2073 10 135086766 . G A 547.08 . 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A G 105033.51 . 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G A 925.99 . 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GCCTCCCCTGCACC G 8127.10 . 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A G 1789.99 . AC=44;AF=0.688;AN=64;BaseQRankSum=4.401;DP=85;Dels=0.00;FS=1.077;HRun=2;HaplotypeScore=0.0598;InbreedingCoeff=0.3309;MQ=57.68;MQ0=0;MQRankSum=-0.239;QD=25.57;ReadPosRankSum=-0.111 GT:AD:DP:GQ:PL 1/1:0,3:3:6.02:80,6,0 1/1:0,1:1:3.01:39,3,0 1/1:0,2:2:3.01:45,3,0 1/1:0,4:4:12.04:159,12,0 ./. 1/1:0,2:2:6.02:68,6,0 1/1:0,3:3:6.02:85,6,0 1/1:0,2:2:6.02:72,6,0 ./. ./. 1/1:0,2:2:6.02:76,6,0 0/1:1,1:2:19.67:31,0,20 ./. ./. 0/0:2,1:3:6.02:0,6,67 0/1:1,2:3:29.55:56,0,30 1/1:0,3:3:6.02:72,6,0 0/0:3,0:3:6.02:0,6,77 0/0:3,0:3:9.02:0,9,101 0/0:3,0:3:9.03:0,9,102 1/1:0,3:3:9.03:117,9,0 1/1:0,7:7:18.05:204,18,0 1/1:0,4:4:12.04:155,12,0 0/1:1,0:1:1.76:0,3,30 1/1:0,2:2:6:65,6,0 0/0:1,0:1:3.01:0,3,35 ./. 0/1:2,0:2:1.76:0,3,27 0/0:1,0:1:3.01:0,3,35 1/1:0,2:2:6.02:78,6,0 ./. 0/1:3,6:9:72.20:140,0,72 1/1:0,1:1:3.01:33,3,0 0/1:1,2:3:27.10:66,0,27 0/0:1,0:1:3.01:0,3,33 1/1:0,2:2:6.02:78,6,0 1/1:0,2:2:6.02:76,6,0 1/1:0,3:3:6.02:82,6,0 ./. ./. 1/1:0,2:2:6.01:63,6,0 ./. 10 135209241 . T A 301.79 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.926;DP=1424;Dels=0.00;FS=5.497;HRun=0;HaplotypeScore=1.0139;InbreedingCoeff=-0.0244;MQ=59.11;MQ0=0;MQRankSum=-0.301;QD=6.42;ReadPosRankSum=0.484 GT:AD:DP:GQ:PL 0/0:29,0:29:81.26:0,81,1022 0/0:50,0:50:99:0,123,1563 0/0:24,0:24:69.22:0,69,868 0/0:72,0:72:99:0,178,2276 0/0:50,0:50:99:0,126,1641 0/0:36,0:36:96.31:0,96,1268 0/0:48,0:48:99:0,126,1658 0/0:40,0:40:99:0,99,1314 0/1:22,9:31:99:248,0,617 0/1:11,5:16:99:116,0,307 0/0:24,0:24:69.21:0,69,857 0/0:28,0:28:84.26:0,84,1031 0/0:28,0:28:75.23:0,75,946 0/0:21,0:21:60.19:0,60,751 0/0:92,0:92:99:0,241,3008 0/0:20,0:20:54.17:0,54,670 0/0:33,0:33:84.25:0,84,1064 0/0:20,0:20:54.17:0,54,678 0/0:39,0:39:99:0,105,1296 0/0:42,0:42:99:0,108,1380 0/0:34,0:34:90.28:0,90,1130 0/0:22,0:22:57.15:0,57,696 0/0:47,0:47:99:0,120,1554 0/0:35,0:35:99:0,99,1256 0/0:35,0:35:96.31:0,96,1246 0/0:34,0:34:84.27:0,84,1102 0/0:17,0:17:48.15:0,48,604 0/0:23,0:23:63.20:0,63,793 0/0:23,0:23:63.20:0,63,791 0/0:34,0:34:84.27:0,84,1071 0/0:30,0:31:81.26:0,81,1023 0/0:51,0:51:99:0,120,1564 0/0:42,0:42:99:0,114,1424 0/0:23,0:23:63.20:0,63,794 0/0:27,0:27:69.22:0,69,882 0/0:31,0:31:81.25:0,81,1023 0/0:41,0:42:99:0,102,1284 0/0:29,0:29:72.22:0,72,896 0/0:28,0:28:75.23:0,75,931 0/0:25,0:25:72.22:0,72,902 0/0:26,0:26:69.21:0,69,859 0/0:22,0:22:60.19:0,60,758 10 135233541 . A G 109187.60 . AC=84;AF=1.000;AN=84;BaseQRankSum=1.541;DP=3661;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.3632;InbreedingCoeff=-0.0000;MQ=59.12;MQ0=1;MQRankSum=0.656;QD=29.82;ReadPosRankSum=-0.061 GT:AD:DP:GQ:PL 1/1:0,53:56:99:1528,135,0 1/1:0,79:79:99:2274,205,0 1/1:0,58:58:99:1614,147,0 1/1:0,154:155:99:4985,421,0 1/1:0,124:124:99:4167,349,0 1/1:0,122:123:99:3924,334,0 1/1:0,83:83:99:2563,217,0 1/1:0,88:88:99:2867,244,0 1/1:0,71:72:99:2064,183,0 1/1:0,69:69:99:2056,183,0 1/1:0,68:70:99:2016,183,0 1/1:0,80:80:99:2259,210,0 1/1:0,59:62:99:1697,153,0 1/1:1,71:73:99:2082,176,0 1/1:0,212:216:99:6373,580,0 1/1:0,77:77:99:2426,220,0 1/1:0,73:74:99:2274,205,0 1/1:0,63:63:99:1820,165,0 1/1:0,97:99:99:2771,256,0 1/1:0,113:114:99:3347,301,0 1/1:0,121:122:99:3640,331,0 1/1:0,64:65:99:1857,168,0 1/1:0,153:155:99:4760,400,0 1/1:0,85:85:99:2743,229,0 1/1:0,113:115:99:3650,298,0 1/1:0,83:83:99:2410,205,0 1/1:0,69:69:99:1974,183,0 1/1:0,72:72:99:2210,201,0 1/1:0,63:65:99:1846,168,0 1/1:0,76:77:99:2088,192,0 1/1:0,79:79:99:2279,205,0 1/1:0,99:99:99:2910,259,0 1/1:0,84:84:99:2548,235,0 1/1:0,72:73:99:2085,189,0 1/1:0,59:59:99:1790,165,0 1/1:0,82:82:99:2457,220,0 1/1:0,101:101:99:2917,262,0 1/1:0,81:81:99:2322,211,0 1/1:0,70:73:99:2074,189,0 1/1:0,76:76:99:2276,210,0 1/1:0,47:47:99:1433,132,0 1/1:0,63:64:99:1813,168,0 10 135347397 . T C 88112 . AC=84;AF=1.000;AN=84;DP=2756;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.5255;InbreedingCoeff=-0.0000;MQ=59.35;MQ0=0;QD=31.97 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1679,150,0 1/1:0,55:55:99:1714,153,0 1/1:0,48:48:99:1466,129,0 1/1:0,95:95:99:3262,274,0 1/1:0,70:71:99:2410,199,0 1/1:0,54:54:99:1811,150,0 1/1:0,50:50:99:1710,141,0 1/1:0,58:58:99:1878,153,0 1/1:0,70:70:99:2252,199,0 1/1:0,44:44:99:1443,129,0 1/1:0,65:65:99:2113,184,0 1/1:0,71:71:99:2204,196,0 1/1:0,46:46:99:1481,135,0 1/1:0,55:55:99:1770,156,0 1/1:0,161:162:99:5084,451,0 1/1:0,46:46:99:1495,135,0 1/1:0,64:64:99:1939,174,0 1/1:0,55:55:99:1712,156,0 1/1:0,101:101:99:3115,274,0 1/1:0,92:92:99:2669,229,0 1/1:0,87:87:99:2756,244,0 1/1:0,74:74:99:2276,202,0 1/1:0,110:110:99:3735,304,0 1/1:0,46:46:99:1604,135,0 1/1:0,43:43:99:1443,120,0 1/1:0,57:57:99:1952,159,0 1/1:0,41:41:99:1267,114,0 1/1:0,57:57:99:1808,162,0 1/1:0,55:55:99:1721,153,0 1/1:0,81:81:99:2626,232,0 1/1:0,51:51:99:1623,147,0 1/1:0,100:100:99:3199,289,0 1/1:0,57:57:99:1703,153,0 1/1:0,52:52:99:1641,147,0 1/1:0,49:49:99:1534,138,0 1/1:0,73:73:99:2249,201,0 1/1:0,79:79:99:2475,223,0 1/1:0,69:69:99:2177,196,0 1/1:0,63:63:99:1988,183,0 1/1:0,48:48:99:1605,144,0 1/1:0,46:46:99:1455,132,0 1/1:0,63:63:99:2070,189,0 10 135351362 . T C 59421.11 . AC=68;AF=0.810;AN=84;BaseQRankSum=19.081;DP=2230;Dels=0.00;FS=7.560;HRun=0;HaplotypeScore=1.4555;InbreedingCoeff=-0.0809;MQ=59.13;MQ0=0;MQRankSum=1.709;QD=27.11;ReadPosRankSum=-1.026 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1511,120,0 1/1:0,34:34:96.29:1199,96,0 1/1:0,45:45:99:1597,129,0 1/1:0,66:66:99:2294,175,0 1/1:0,56:56:99:1999,153,0 0/1:31,32:63:99:900,0,858 0/1:32,32:64:99:1062,0,863 1/1:0,56:56:99:2020,153,0 1/1:0,39:40:99:1265,102,0 1/1:0,40:40:99:1390,111,0 1/1:0,36:36:99:1266,102,0 0/1:20,27:48:99:779,0,544 0/1:26,16:42:99:424,0,696 1/1:0,53:53:99:1777,141,0 0/1:75,81:156:99:2196,0,2022 0/1:17,18:35:99:548,0,447 1/1:0,58:58:99:1923,153,0 0/1:19,19:38:99:592,0,517 0/1:44,43:88:99:1153,0,1132 1/1:0,77:77:99:2498,199,0 0/1:30,40:70:99:1157,0,845 0/1:27,25:53:99:695,0,726 1/1:0,75:75:99:2722,208,0 1/1:0,48:48:99:1698,126,0 1/1:0,48:48:99:1879,141,0 1/1:0,48:48:99:1617,120,0 0/1:21,15:36:99:415,0,579 1/1:0,42:42:99:1435,117,0 0/0:38,0:38:99:0,102,1208 1/1:0,48:48:99:1661,135,0 1/1:0,46:46:99:1623,129,0 1/1:0,63:63:99:2179,172,0 1/1:0,50:50:99:1795,144,0 1/1:0,45:45:99:1507,123,0 0/1:21,15:37:99:448,0,489 1/1:0,46:46:99:1643,132,0 1/1:0,54:54:99:1825,144,0 1/1:0,49:49:99:1687,132,0 0/1:20,25:46:99:706,0,535 1/1:0,51:51:99:1658,132,0 0/1:21,20:41:99:598,0,526 1/1:0,58:58:99:2079,166,0 10 135369163 . A C 208.63 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.741;DP=985;Dels=0.00;FS=10.605;HRun=1;HaplotypeScore=1.0085;InbreedingCoeff=-0.0249;MQ=58.81;MQ0=0;MQRankSum=0.029;QD=7.45;ReadPosRankSum=-2.592 GT:AD:DP:GQ:PL 0/0:16,0:16:48.12:0,48,554 0/0:10,0:10:24.05:0,24,273 0/0:14,0:14:30.09:0,30,369 0/0:69,1:70:99:0,193,2316 0/0:45,0:45:99:0,132,1536 0/0:35,0:35:90.25:0,90,1048 0/0:36,0:36:90.24:0,90,1054 0/0:33,1:34:90.27:0,90,1085 0/0:20,0:20:48.14:0,48,574 0/0:15,0:15:42.12:0,42,493 0/0:14,0:14:36.11:0,36,436 0/1:5,4:9:94.45:94,0,142 0/0:15,0:15:33.10:0,33,391 0/1:11,8:19:99:177,0,305 0/0:61,0:61:99:0,150,1798 0/0:14,0:14:42.13:0,42,520 0/0:17,0:17:48.12:0,48,558 0/0:12,0:12:33.09:0,33,386 0/0:21,0:21:45.14:0,45,556 0/0:24,0:24:72.21:0,72,853 0/0:23,1:25:60.18:0,60,738 0/0:26,0:26:72.19:0,72,843 0/0:78,0:78:99:0,217,2594 0/0:30,0:30:72.22:0,72,877 0/0:46,0:46:99:0,120,1444 0/0:37,0:37:96.29:0,96,1171 0/0:10,0:10:24.07:0,24,291 0/0:12,0:12:30.09:0,30,355 0/0:15,0:15:42.13:0,42,516 0/0:6,0:6:18.06:0,18,223 0/0:19,0:19:48.14:0,48,569 0/0:40,0:40:99:0,111,1360 0/0:12,0:12:33.10:0,33,387 0/0:8,0:8:21.06:0,21,263 0/0:18,0:18:51.14:0,51,590 0/0:18,0:18:39.11:0,39,470 0/0:10,0:10:27.04:0,27,293 0/0:14,0:14:39.09:0,39,452 0/0:15,0:15:39.12:0,39,472 0/0:17,0:17:45.13:0,45,537 0/0:17,0:17:48.14:0,48,562 0/0:11,0:11:27.08:0,27,333 10 135369532 . T C 4735.18 . AC=10;AF=0.119;AN=84;BaseQRankSum=-0.029;DP=1854;Dels=0.00;FS=56.685;HRun=2;HaplotypeScore=2.9823;InbreedingCoeff=0.3189;MQ=58.16;MQ0=0;MQRankSum=0.381;QD=12.66;ReadPosRankSum=-1.562 GT:AD:DP:GQ:PL 0/0:32,0:32:75.23:0,75,911 0/0:38,0:39:90.27:0,90,1086 0/0:24,0:24:48.15:0,48,590 0/0:101,0:101:99:0,238,2976 0/0:79,0:79:99:0,178,2196 0/0:62,0:62:99:0,141,1813 0/1:20,20:40:99:512,0,612 0/0:46,0:46:99:0,102,1285 0/0:41,0:41:93.28:0,93,1133 0/0:34,0:34:84.26:0,84,1027 0/0:30,0:30:69.22:0,69,852 0/0:34,0:34:93.29:0,93,1149 0/0:39,0:39:99:0,105,1291 0/0:34,0:34:78.23:0,78,956 0/0:123,0:123:99:0,325,3972 0/0:30,0:30:72.21:0,72,861 0/0:23,0:23:54.15:0,54,646 0/0:40,0:40:75.22:0,75,906 0/1:34,19:53:99:340,0,923 0/1:49,33:82:99:707,0,1255 0/1:35,18:53:99:445,0,969 0/0:40,0:40:99:0,111,1340 0/0:77,0:77:99:0,144,1813 0/0:32,0:32:69.21:0,69,868 0/0:74,0:74:99:0,162,2054 0/0:38,0:38:69.22:0,69,892 0/0:27,0:27:75.22:0,75,897 0/0:37,1:38:96.29:0,96,1156 0/0:28,0:28:66.19:0,66,798 0/0:41,0:41:99:0,105,1282 0/0:29,0:29:69.21:0,69,840 0/1:32,23:55:99:688,0,796 0/0:41,0:41:96.29:0,96,1167 0/0:39,0:39:81.25:0,81,990 0/0:41,0:41:99:0,102,1265 0/0:37,0:37:87.27:0,87,1092 1/1:0,35:35:90.24:1087,90,0 0/1:17,10:27:99:148,0,346 1/1:1,28:29:69.19:809,69,0 0/0:27,0:27:57.18:0,57,708 0/0:20,0:20:51.15:0,51,601 0/0:39,1:40:62.32:0,62,1132 10 135369535 . G C 47.08 . AC=4;AF=0.048;AN=84;BaseQRankSum=-13.265;DP=2422;Dels=0.00;FS=302.892;HRun=2;HaplotypeScore=4.7843;InbreedingCoeff=-0.0904;MQ=58.46;MQ0=0;MQRankSum=-0.135;QD=0.30;ReadPosRankSum=-11.296 GT:AD:DP:GQ:PL 0/0:24,15:39:2.33:1,0,622 0/0:32,15:47:14.93:0,15,749 0/0:23,8:31:45.13:0,45,540 0/0:84,57:141:55.19:0,55,2265 0/0:55,49:104:1.67:0,2,1540 0/0:61,27:88:1.94:0,2,1248 0/0:43,14:57:87.25:0,87,1124 0/0:45,21:66:89.82:0,90,1093 0/0:35,16:51:78.25:0,78,994 0/0:27,14:41:50.49:0,50,845 0/1:23,15:38:35.02:35,0,607 0/1:31,19:50:11.63:12,0,849 0/0:36,13:49:71.58:0,72,1061 0/0:31,10:41:33.96:0,34,788 0/0:117,49:167:93.69:0,94,3259 0/0:21,17:39:22.59:0,23,572 0/1:18,12:30:26.69:27,0,502 0/0:21,25:46:23.49:0,23,574 0/0:47,21:69:18.86:0,19,1181 0/0:85,18:103:99:0,157,2100 0/0:48,13:61:80.86:0,81,1277 0/0:39,13:52:56.66:0,57,988 0/0:60,45:105:87.15:0,87,1469 0/0:33,15:48:3.14:0,3,656 0/0:58,38:96:0.72:0,1,1580 0/0:37,15:52:2.31:0,2,724 0/1:25,12:37:55.43:55,0,664 0/0:38,2:40:90.20:0,90,1036 0/0:21,14:35:52.94:0,53,633 0/0:40,21:61:68.31:0,68,1122 0/0:25,10:35:54.13:0,54,647 0/0:43,13:57:81.57:0,82,1203 0/0:37,22:59:54.42:0,54,869 0/0:35,13:48:50.59:0,51,866 0/0:38,15:53:87.22:0,87,1049 0/0:37,20:57:9.30:0,9,729 0/0:34,14:48:17.17:0,17,800 0/0:22,8:30:17.51:0,18,481 0/0:30,4:34:54.11:0,54,622 0/0:26,12:38:54.06:0,54,630 0/0:15,12:27:3.68:0,4,393 0/0:34,18:52:26.09:0,26,943 10 135369535 . G GC 173.94 . AC=11;AF=0.131;AN=84;BaseQRankSum=8.048;DP=2517;FS=333.603;HRun=2;HaplotypeScore=257.7175;InbreedingCoeff=-0.1816;MQ=58.11;MQ0=0;MQRankSum=-0.857;QD=0.28;ReadPosRankSum=-16.378 GT:AD:DP:GQ:PL 0/0:42,0:42:2.50:1,0,587 0/0:50,0:50:74.24:0,74,873 0/0:32,0:32:45.10:0,45,525 0/0:145,0:145:1.40:4,0,1901 0/1:104,0:104:20.17:20,0,1372 0/1:92,0:89:8.62:9,0,1476 0/0:59,0:57:81.68:0,82,973 0/0:69,0:68:54.12:0,54,923 0/0:54,0:54:71.22:0,71,966 0/0:44,0:44:58.85:0,59,898 0/1:40,0:40:41.67:42,0,594 0/0:53,0:52:12.68:0,13,924 0/0:49,1:50:89.05:0,89,993 0/0:41,0:41:35.37:0,35,739 0/0:179,0:179:58.40:0,58,3002 0/0:38,0:38:30.45:0,30,572 0/1:30,0:30:41.76:42,0,458 0/0:45,0:45:20.58:0,21,586 0/1:80,0:80:53.23:53,0,1052 0/0:105,0:105:99:0,180,2227 0/0:66,0:66:40.52:0,41,1060 0/0:51,0:51:45.69:0,46,823 0/0:108,0:108:53.02:0,53,1286 0/0:50,0:45:2:2,0,612 0/0:99,0:96:69.79:0,70,1330 0/1:58,0:55:16.41:16,0,679 0/1:38,0:38:54.64:55,0,558 0/0:37,7:44:39.43:0,39,972 0/1:38,0:38:20.04:20,0,674 0/0:63,0:63:42.84:0,43,1059 0/0:37,0:37:56.97:0,57,697 0/0:60,0:60:87.86:0,88,1121 0/0:59,0:59:16.88:0,17,817 0/0:48,0:48:43.12:0,43,746 0/0:51,0:51:84.19:0,84,977 0/1:57,0:57:12.70:13,0,718 0/1:50,0:50:7.88:8,0,728 0/0:29,0:29:7.99:0,8,391 0/0:37,0:37:54.15:0,54,650 0/0:40,0:40:41.15:0,41,647 0/1:29,0:29:34.45:34,0,454 0/0:53,0:53:8.35:0,8,807 10 135372841 . C G 740.99 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.007;DP=3289;Dels=0.00;FS=1.583;HRun=0;HaplotypeScore=1.8352;InbreedingCoeff=-0.0120;MQ=59.21;MQ0=1;MQRankSum=1.284;QD=10.59;ReadPosRankSum=-1.101 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,169,2125 0/0:52,0:52:99:0,135,1736 0/0:68,0:68:99:0,184,2318 0/0:114,0:114:99:0,310,4194 0/0:110,0:111:99:0,304,4128 0/0:70,0:70:99:0,190,2515 0/0:69,0:69:99:0,172,2313 0/0:72,0:72:99:0,178,2425 0/0:50,0:50:99:0,135,1695 0/0:54,0:54:99:0,147,1877 0/0:63,0:64:99:0,169,2154 0/0:51,0:51:99:0,135,1742 0/0:52,0:52:99:0,144,1801 0/0:56,0:56:99:0,153,1931 0/0:203,0:203:99:0,512,6619 0/0:55,0:55:99:0,144,1836 0/0:63,0:63:99:0,175,2207 0/0:52,0:52:99:0,138,1766 0/0:140,0:140:99:0,358,4612 0/0:139,0:139:99:0,355,4595 0/0:141,0:143:99:0,367,4704 0/0:84,0:84:99:0,220,2835 0/0:115,0:115:99:0,292,4005 0/0:64,0:64:99:0,166,2264 0/0:87,0:87:99:0,214,2967 0/1:42,28:70:99:787,0,1273 0/0:53,0:53:99:0,135,1738 0/0:63,0:63:99:0,166,2133 0/0:53,0:53:99:0,144,1859 0/0:76,0:77:99:0,202,2594 0/0:57,0:57:99:0,160,2044 0/0:129,0:129:99:0,319,4090 0/0:84,0:84:99:0,235,2983 0/0:58,0:58:99:0,147,1910 0/0:63,0:63:99:0,169,2150 0/0:67,0:67:99:0,178,2292 0/0:124,0:124:99:0,310,3990 0/0:52,0:53:99:0,147,1852 0/0:56,0:56:99:0,150,1927 0/0:81,0:81:99:0,214,2728 0/0:61,0:61:99:0,172,2169 0/0:52,0:52:99:0,147,1896 10 135439445 . G A 58.47 . AC=7;AF=0.125;AN=56;BaseQRankSum=-5.048;DP=3238;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3987;InbreedingCoeff=0.1437;MQ=3.25;MQ0=3088;MQRankSum=-2.008;QD=0.17;ReadPosRankSum=-1.932 GT:AD:DP:GQ:PL ./. 0/0:67,5:72:5.98:0,6,47 0/0:40,5:45:2.99:0,3,24 ./. ./. 0/0:94,8:103:5.98:0,6,47 ./. 0/0:110,5:115:5.98:0,6,47 ./. ./. 0/0:62,5:67:2.99:0,3,24 ./. 0/1:33,7:40:17.68:24,0,18 ./. 0/0:169,15:184:5.98:0,6,47 0/0:47,12:59:2.99:0,3,24 0/0:70,8:78:2.99:0,3,24 0/0:60,5:65:2.99:0,3,24 0/0:66,8:75:5.99:0,6,48 0/0:58,13:73:2.99:0,3,24 0/1:76,16:92:12.70:13,0,38 0/0:67,8:75:2.99:0,3,24 0/0:133,11:144:17.95:0,18,143 1/1:76,14:90:3.01:30,3,0 ./. 0/0:89,17:107:2.99:0,3,24 ./. 0/0:42,7:49:2.99:0,3,24 0/0:41,10:51:5.98:0,6,47 0/0:56,6:63:5.98:0,6,47 0/0:55,11:67:5.98:0,6,46 0/0:80,10:90:11.96:0,12,93 0/1:42,12:54:1.76:22,3,0 0/0:45,9:54:2.99:0,3,24 1/1:55,11:66:6.01:59,6,0 0/0:57,2:59:2.99:0,3,24 ./. 0/0:47,9:57:8.98:0,9,71 ./. 0/0:66,9:75:5.98:0,6,47 ./. ./. 10 135439457 . C G 96.58 . AC=8;AF=0.143;AN=56;BaseQRankSum=-2.716;DP=4065;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1293;InbreedingCoeff=0.1205;MQ=3.05;MQ0=3898;MQRankSum=-1.545;QD=0.14;ReadPosRankSum=0.281 GT:AD:DP:GQ:PL ./. 0/0:65,8:73:5.98:0,6,47 0/0:49,14:63:2.99:0,3,24 ./. ./. 0/0:113,21:134:8.98:0,9,71 ./. 0/0:139,24:163:5.98:0,6,47 ./. ./. 0/0:77,8:85:2.99:0,3,24 ./. 0/1:36,12:48:14.68:50,0,15 ./. 0/1:191,34:226:14.71:15,0,38 ./. 0/0:81,15:96:2.99:0,3,24 0/0:65,17:82:2.99:0,3,24 0/0:67,23:90:2.99:0,3,24 0/0:77,25:103:2.99:0,3,24 0/1:95,31:127:15.71:16,0,38 0/0:69,15:84:2.99:0,3,24 0/0:150,26:176:14.96:0,15,119 1/1:92,30:122:3.01:30,3,0 ./. 0/0:100,26:127:2.99:0,3,24 ./. 0/0:52,15:67:5.98:0,6,47 0/0:55,17:72:5.98:0,6,47 0/0:66,6:72:8.98:0,9,71 0/0:74,15:90:2.99:0,3,24 0/0:103,19:122:14.96:0,15,118 0/1:55,21:76:1.76:22,3,0 0/0:49,12:61:2.99:0,3,24 1/1:65,16:81:6.01:59,6,0 0/0:68,7:75:5.98:0,6,47 0/0:79,27:107:5.98:0,6,47 0/0:60,15:75:8.98:0,9,71 ./. 0/0:70,12:82:5.98:0,6,47 ./. ./. 10 135439803 . C T 96.53 . AC=15;AF=0.341;AN=44;BaseQRankSum=-0.198;DP=7615;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1524;InbreedingCoeff=0.3326;MQ=1.54;MQ0=7528;MQRankSum=0.261;QD=0.07;ReadPosRankSum=2.791 GT:AD:DP:GQ:PL ./. 1/1:127,43:172:2.99:24,3,0 1/1:115,20:135:2.99:24,3,0 ./. 0/0:184,45:229:3.01:0,3,30 0/0:148,70:218:2.99:0,3,23 ./. ./. ./. ./. 0/0:98,48:146:5.98:0,6,47 0/1:110,52:163:1.76:22,3,0 ./. 0/0:116,22:138:2.98:0,3,22 0/0:209,40:250:2.99:0,3,24 0/0:132,23:155:2.99:0,3,24 ./. 0/0:158,27:185:2.99:0,3,23 1/1:184,40:224:2.99:24,3,0 ./. ./. 0/0:197,1:198:5.98:0,6,47 ./. ./. ./. ./. 1/1:70,57:127:2.99:24,3,0 0/0:98,61:159:2.99:0,3,24 1/1:105,52:158:2.99:24,3,0 ./. 0/0:120,20:141:2.98:0,3,22 1/1:146,83:229:2.99:24,3,0 0/0:171,44:215:2.99:0,3,24 0/0:145,24:169:2.99:0,3,24 ./. ./. ./. ./. 0/0:95,54:150:2.99:0,3,24 0/0:183,0:184:2.99:0,3,23 ./. 1/1:143,41:184:3:28,3,0 11 193722 . A G 3800.48 . AC=14;AF=0.167;AN=84;BaseQRankSum=-8.592;DP=2639;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=1.4437;InbreedingCoeff=-0.2071;MQ=58.93;MQ0=0;MQRankSum=1.848;QD=4.09;ReadPosRankSum=-2.159 GT:AD:DP:GQ:PL 0/0:57,0:58:99:0,156,1906 0/0:44,0:44:99:0,117,1441 0/1:44,9:53:99:119,0,1429 0/0:111,0:111:99:0,298,3690 0/0:115,0:115:99:0,319,3986 0/1:81,15:96:99:255,0,2482 0/1:50,17:67:99:341,0,1470 0/0:71,0:71:99:0,199,2446 0/0:52,0:52:99:0,138,1719 0/0:43,0:44:99:0,114,1373 0/0:51,0:51:99:0,144,1779 0/0:46,0:46:99:0,126,1553 0/0:46,0:46:99:0,126,1535 0/0:45,0:45:99:0,126,1518 0/0:190,0:190:99:0,469,5856 0/0:42,0:42:99:0,123,1495 0/0:44,0:44:99:0,120,1488 0/0:35,0:35:90.27:0,90,1109 0/0:75,2:77:99:0,205,2459 0/1:62,29:91:99:652,0,1783 0/1:67,13:80:99:191,0,1832 0/0:36,0:36:99:0,105,1264 0/0:110,0:110:99:0,295,3691 0/0:66,0:66:99:0,171,2139 0/1:58,11:69:99:191,0,1752 0/0:64,0:64:99:0,165,2075 0/1:29,6:35:99:104,0,924 0/1:34,15:49:99:341,0,970 0/0:48,0:48:99:0,132,1611 0/0:50,0:50:99:0,144,1733 0/0:46,0:47:99:0,126,1567 0/1:80,18:98:99:311,0,2360 0/1:34,17:51:99:307,0,1024 0/1:36,14:50:99:266,0,1083 0/1:45,11:56:99:181,0,1249 0/1:47,7:54:71.29:71,0,1389 0/1:59,21:80:99:470,0,1636 0/0:35,0:35:99:0,105,1270 0/0:37,4:41:1.54:0,2,1197 0/0:45,1:46:85.59:0,86,1462 0/0:35,0:35:99:0,102,1240 0/0:61,0:61:99:0,171,2100 11 193797 . G C 945.33 . AC=4;AF=0.048;AN=84;BaseQRankSum=-8.500;DP=3231;Dels=0.00;FS=1.056;HRun=0;HaplotypeScore=1.4637;InbreedingCoeff=-0.0500;MQ=59.22;MQ0=0;MQRankSum=-0.316;QD=3.62;ReadPosRankSum=0.232 GT:AD:DP:GQ:PL 0/0:66,0:66:99:0,181,2280 0/0:52,0:52:99:0,144,1800 0/0:62,0:62:99:0,172,2182 0/0:155,0:156:99:0,418,5587 0/0:125,0:125:99:0,340,4619 0/0:98,0:98:99:0,277,3657 0/0:86,1:87:99:0,235,3086 0/0:98,0:98:99:0,271,3628 0/0:79,0:79:99:0,217,2780 0/0:62,0:62:99:0,169,2128 0/0:61,0:61:99:0,177,2213 0/0:51,0:51:99:0,135,1742 0/0:41,0:41:99:0,117,1483 0/0:69,0:69:99:0,181,2299 0/0:209,0:209:99:0,557,7091 0/0:67,0:67:99:0,172,2152 0/0:67,0:67:99:0,181,2341 0/0:70,0:70:99:0,190,2404 0/0:77,0:77:99:0,211,2649 0/0:85,0:85:99:0,226,2859 0/0:97,0:97:99:0,247,3170 0/0:57,0:57:99:0,162,2026 0/0:149,0:150:99:0,400,5419 0/0:66,0:66:99:0,184,2456 0/0:83,0:83:99:0,226,3040 0/1:60,12:72:99:228,0,2051 0/0:60,0:60:99:0,163,2073 0/1:44,17:61:99:302,0,1490 0/0:73,0:73:99:0,199,2514 0/0:64,0:65:99:0,181,2274 0/0:55,0:55:99:0,159,2020 0/0:80,0:80:99:0,217,2784 0/0:65,0:65:99:0,178,2236 0/0:58,0:58:99:0,159,1998 0/0:52,0:52:99:0,144,1826 0/0:60,0:60:99:0,160,2061 0/0:79,0:81:99:0,220,2741 0/0:56,0:56:99:0,144,1838 0/0:66,0:66:99:0,184,2329 0/1:52,18:70:99:355,0,1702 0/1:48,10:58:99:146,0,1556 0/0:64,0:64:99:0,169,2173 11 193808 . G T 528.34 . 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T C 39300.34 . 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T G 25762.72 . 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A C 180.25 . AC=9;AF=0.107;AN=84;BaseQRankSum=-18.200;DP=1354;Dels=0.00;FS=627.077;HRun=3;HaplotypeScore=0.8883;InbreedingCoeff=-0.1450;MQ=58.72;MQ0=0;MQRankSum=0.811;QD=0.66;ReadPosRankSum=-12.443 GT:AD:DP:GQ:PL 0/0:18,12:30:29.46:0,29,568 0/0:16,12:28:17.46:0,17,475 0/0:19,4:23:54.12:0,54,625 0/0:24,18:42:7.28:0,7,628 0/0:28,12:40:56.61:0,57,953 0/1:17,9:26:15.95:16,0,490 0/0:18,8:26:51.14:0,51,622 0/0:20,11:31:29.16:0,29,612 0/1:15,10:25:21.85:22,0,406 0/0:16,11:27:47.18:0,47,547 0/0:13,8:21:39.10:0,39,461 0/1:17,12:29:35.81:36,0,501 0/0:15,6:23:11.54:0,12,454 0/0:24,16:40:15.01:0,15,765 0/0:50,34:85:5.36:0,5,1324 0/0:19,9:28:31.68:0,32,592 0/1:15,9:24:42.92:43,0,423 0/0:20,14:34:57.06:0,57,659 0/1:27,6:33:41.82:42,0,724 0/1:25,14:39:34.06:34,0,744 0/0:37,13:50:43.78:0,44,1090 0/0:22,5:28:5.25:0,5,648 0/0:30,14:44:1.87:3,0,880 0/0:8,8:16:24.07:0,24,295 0/0:18,11:29:13.63:0,14,585 0/0:24,15:39:42.02:0,42,774 0/0:16,14:30:19.12:0,19,454 0/0:15,10:25:39.10:0,39,464 0/0:19,17:36:10.64:0,11,562 0/1:10,12:22:58.55:59,0,262 0/0:17,12:29:48.14:0,48,572 0/0:27,16:43:39.05:0,39,821 0/0:21,9:30:10.79:0,11,588 0/0:19,9:28:31.51:0,32,652 0/0:22,7:29:41.36:0,41,709 0/1:15,14:29:37.73:38,0,424 0/1:35,9:45:15.49:15,0,1087 0/0:23,11:35:23.91:0,24,780 0/0:18,7:25:9.79:0,10,575 0/0:23,12:35:45.76:0,46,733 0/0:20,8:28:57.14:0,57,651 0/0:20,4:24:60.18:0,60,729 11 213377 . C T 395.62 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.330;DP=584;Dels=0.00;FS=2.553;HRun=0;HaplotypeScore=0.1616;InbreedingCoeff=-0.0255;MQ=59.19;MQ0=0;MQRankSum=1.082;QD=10.99;ReadPosRankSum=0.977 GT:AD:DP:GQ:PL 0/0:21,0:21:60.16:0,60,681 0/0:11,0:11:30.08:0,30,339 0/0:14,0:15:39.11:0,39,456 0/0:18,0:18:48.14:0,48,575 0/0:13,0:13:39.10:0,39,449 0/0:15,0:15:45.08:0,45,507 0/0:17,0:17:48.14:0,48,567 0/0:16,0:16:45.13:0,45,547 0/0:19,0:19:57.12:0,57,619 0/0:7,0:7:21.05:0,21,234 0/0:11,0:11:33.08:0,33,360 0/0:10,0:10:30.07:0,30,325 0/0:7,0:7:18.05:0,18,210 0/0:11,0:11:30.09:0,30,355 0/0:42,0:42:99:0,108,1240 0/0:9,0:9:21.04:0,21,232 0/0:14,0:14:39.11:0,39,437 0/0:11,0:11:33.08:0,33,352 0/0:22,0:22:54.13:0,54,603 0/0:9,0:9:27.07:0,27,299 0/0:15,0:15:42.11:0,42,461 0/0:16,0:16:45.12:0,45,505 0/0:15,0:15:42.12:0,42,494 0/0:11,0:11:30.09:0,30,355 0/0:12,0:12:36.11:0,36,427 0/0:12,0:12:36.10:0,36,420 0/0:17,0:17:42.10:0,42,487 0/0:10,0:10:30.07:0,30,321 0/0:16,0:16:48.12:0,48,527 0/0:10,0:10:27.07:0,27,312 0/0:10,0:10:30.06:0,30,318 0/0:16,0:16:42.11:0,42,495 0/0:11,0:11:27.07:0,27,305 0/0:7,0:7:18.05:0,18,198 0/0:7,0:7:18.05:0,18,197 0/0:14,0:14:39.11:0,39,457 0/1:15,7:22:99:170,0,424 0/1:5,9:14:95.06:288,0,95 0/0:12,0:12:33.09:0,33,369 0/0:19,0:19:57.15:0,57,622 0/0:13,0:13:36.09:0,36,406 0/0:7,0:7:18.04:0,18,193 11 230474 . G T 1350.45 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.489;DP=2679;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.6216;InbreedingCoeff=-0.0244;MQ=59.17;MQ0=0;MQRankSum=1.247;QD=9.51;ReadPosRankSum=0.708 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,135,1670 0/0:47,0:47:99:0,123,1572 0/0:31,0:31:87.26:0,87,1079 0/0:127,0:127:99:0,325,4318 0/0:123,0:123:99:0,313,4169 0/1:43,31:74:99:774,0,1363 0/0:72,0:73:99:0,196,2538 0/1:42,26:68:99:639,0,1245 0/0:50,0:50:99:0,141,1781 0/0:55,0:55:99:0,138,1752 0/0:41,0:41:99:0,108,1370 0/0:52,0:52:99:0,132,1688 0/0:40,0:40:99:0,111,1362 0/0:45,0:45:99:0,114,1481 0/0:172,0:172:99:0,439,5632 0/0:41,0:41:99:0,108,1372 0/0:49,0:49:99:0,135,1723 0/0:50,0:50:99:0,132,1718 0/0:81,0:81:99:0,211,2540 0/0:113,0:113:99:0,283,3658 0/0:83,1:84:99:0,204,2527 0/0:63,0:63:99:0,169,2159 0/0:150,0:150:99:0,361,4843 0/0:68,0:68:99:0,178,2403 0/0:81,0:81:99:0,205,2688 0/0:75,0:75:99:0,190,2536 0/0:37,0:37:93.25:0,93,1182 0/0:45,0:45:99:0,132,1641 0/0:34,0:34:90.28:0,90,1130 0/0:55,0:55:99:0,144,1832 0/0:39,0:39:99:0,105,1304 0/0:83,0:83:99:0,205,2645 0/0:42,0:42:99:0,114,1433 0/0:47,0:47:99:0,129,1629 0/0:46,0:46:99:0,126,1614 0/0:58,0:58:99:0,166,2103 0/0:65,0:65:99:0,168,2042 0/0:56,0:56:99:0,153,1936 0/0:44,0:45:99:0,111,1382 0/0:43,0:43:99:0,123,1568 0/0:32,0:32:87.27:0,87,1105 0/0:48,0:48:99:0,132,1658 11 233067 . C T 20125.85 . 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C A 10602.48 . 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C T 47305.73 . AC=62;AF=0.738;AN=84;BaseQRankSum=-13.861;DP=2441;Dels=0.00;FS=0.478;HRun=0;HaplotypeScore=0.9061;InbreedingCoeff=-0.1103;MQ=53.03;MQ0=0;MQRankSum=-16.873;QD=20.31;ReadPosRankSum=3.160 GT:AD:DP:GQ:PL 0/1:39,20:59:99:525,0,1133 0/1:24,18:42:99:461,0,727 0/1:25,16:41:99:410,0,715 1/1:0,85:85:99:2734,238,0 0/1:88,39:127:99:931,0,2712 1/1:0,92:92:99:3125,271,0 1/1:0,63:63:99:2068,183,0 1/1:0,74:74:99:2438,211,0 0/0:55,0:55:99:0,144,1800 0/0:56,1:57:99:0,128,1924 0/1:35,20:55:99:547,0,951 1/1:0,40:40:99:1307,114,0 1/1:0,33:33:93.12:1025,93,0 0/1:24,13:37:99:334,0,790 0/1:99,76:175:99:1834,0,2733 0/1:22,14:36:99:378,0,674 0/1:36,17:53:99:436,0,1105 0/1:36,15:51:99:367,0,1118 1/1:0,51:51:99:1650,147,0 1/1:0,48:48:99:1620,141,0 1/1:0,65:65:99:2048,183,0 0/1:29,12:41:99:293,0,787 0/1:89,49:138:99:1259,0,2686 0/1:66,33:99:99:800,0,1967 1/1:0,82:82:99:2745,238,0 0/1:59,45:104:99:1179,0,1661 1/1:0,22:22:63.16:735,63,0 1/1:0,47:47:99:1506,129,0 1/1:0,29:29:87.19:971,87,0 1/1:0,49:49:99:1537,132,0 1/1:0,40:40:99:1301,114,0 1/1:0,51:51:99:1679,147,0 1/1:0,32:32:93.18:1034,93,0 0/1:24,19:43:99:537,0,636 0/1:20,23:43:99:603,0,600 0/1:23,16:39:99:411,0,660 1/1:0,53:53:99:1574,141,0 0/1:33,19:52:99:468,0,940 1/1:0,35:35:99:1223,105,0 1/1:0,31:31:90.14:972,90,0 1/1:2,24:26:11.95:637,12,0 1/1:0,46:46:99:1606,135,0 11 244171 . T C 53375.98 . 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T C 52497.31 . AC=62;AF=0.738;AN=84;BaseQRankSum=-13.275;DP=2689;Dels=0.00;FS=5.374;HRun=0;HaplotypeScore=0.7712;InbreedingCoeff=-0.1208;MQ=54.58;MQ0=0;MQRankSum=-6.629;QD=20.34;ReadPosRankSum=0.880 GT:AD:DP:GQ:PL 0/1:37,28:65:99:724,0,1107 0/1:24,22:46:99:538,0,738 0/1:20,18:39:99:424,0,558 1/1:0,106:106:99:3381,283,0 0/1:76,48:124:99:1216,0,2220 1/1:0,100:100:99:3313,277,0 1/1:0,76:76:99:2543,214,0 1/1:0,86:86:99:2774,229,0 0/0:53,0:53:99:0,138,1723 0/0:54,1:55:99:0,116,1759 0/1:35,22:57:99:536,0,1000 1/1:0,48:48:99:1443,126,0 1/1:0,44:44:99:1253,111,0 0/1:24,8:32:99:152,0,733 0/1:113,85:199:99:2086,0,3012 0/1:27,15:42:99:352,0,829 0/1:33,25:58:99:594,0,903 0/1:40,18:58:99:468,0,1153 1/1:0,69:69:99:2106,186,0 1/1:0,49:49:99:1491,132,0 1/1:0,73:74:99:2224,201,0 0/1:33,12:45:99:265,0,886 0/1:89,61:150:99:1599,0,2473 0/1:63,46:109:99:1053,0,1986 1/1:0,95:95:99:3105,253,0 0/1:72,46:119:99:1226,0,1944 1/1:0,23:23:69.15:738,69,0 1/1:0,50:50:99:1471,126,0 1/1:0,37:37:99:1199,108,0 1/1:0,54:54:99:1660,144,0 1/1:0,51:51:99:1615,144,0 1/1:0,54:54:99:1652,144,0 1/1:0,29:29:78.14:867,78,0 0/1:22,27:49:99:726,0,633 0/1:27,17:44:99:422,0,755 0/1:24,18:42:99:469,0,676 1/1:0,52:52:99:1480,138,0 0/1:28,20:48:99:509,0,804 1/1:0,42:42:99:1266,114,0 1/1:0,38:38:99:1194,111,0 1/1:2,23:25:1.32:616,1,0 1/1:0,53:53:99:1750,156,0 11 284528 . G A 45.08 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.736;DP=1002;Dels=0.00;FS=2.047;HRun=0;HaplotypeScore=0.7981;InbreedingCoeff=-0.0129;MQ=58.61;MQ0=1;MQRankSum=-0.809;QD=2.37;ReadPosRankSum=-0.360 GT:AD:DP:GQ:PL 0/0:23,0:23:57.16:0,57,673 0/0:22,0:22:57.15:0,57,653 0/1:14,5:19:91.29:91,0,402 0/0:45,0:45:99:0,117,1504 0/0:49,0:49:99:0,132,1697 0/0:25,0:25:75.19:0,75,908 0/0:23,0:23:60.18:0,60,771 0/0:27,0:27:75.22:0,75,940 0/0:23,0:23:63.18:0,63,747 0/0:14,0:14:42.11:0,42,477 0/0:24,0:24:54.15:0,54,652 0/0:22,0:22:54.16:0,54,641 0/0:17,0:17:51.13:0,51,574 0/0:23,0:23:63.17:0,63,731 0/0:56,0:56:99:0,147,1712 0/0:22,0:22:60.15:0,60,702 0/0:18,0:18:45.11:0,45,512 0/0:5,0:5:12.03:0,12,134 0/0:16,0:16:39.11:0,39,464 0/0:39,0:39:99:0,99,1148 0/0:31,0:32:84.21:0,84,962 0/0:19,0:19:54.14:0,54,618 0/0:56,0:56:99:0,141,1845 0/0:21,0:21:54.17:0,54,699 0/0:30,0:30:72.21:0,72,917 0/0:22,0:22:57.17:0,57,731 0/0:14,0:14:39.10:0,39,437 0/0:15,0:15:45.11:0,45,488 0/0:17,0:17:45.12:0,45,513 0/0:17,0:17:45.10:0,45,516 0/0:15,1:16:39.08:0,39,443 0/0:37,0:37:90.26:0,90,1073 0/0:22,0:22:63.16:0,63,723 0/0:17,0:17:48.10:0,48,530 0/0:29,0:29:72.17:0,72,846 0/0:30,0:30:84.22:0,84,984 0/0:27,0:28:69.20:0,69,822 0/0:16,0:16:42.12:0,42,495 0/0:15,0:15:45.13:0,45,532 0/0:17,0:17:48.13:0,48,560 0/0:8,0:8:21.06:0,21,260 0/0:12,0:12:33.09:0,33,376 11 284538 . T C 18090.80 . AC=59;AF=0.702;AN=84;BaseQRankSum=-6.423;DP=960;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.9649;InbreedingCoeff=0.2588;MQ=58.63;MQ0=1;MQRankSum=-1.910;QD=22.84;ReadPosRankSum=-2.395 GT:AD:DP:GQ:PL 1/1:0,26:26:66.18:791,66,0 0/1:7,13:20:99:387,0,203 0/0:22,0:22:54.17:0,54,692 0/1:26,19:45:99:504,0,713 1/1:0,40:41:99:1342,111,0 0/1:21,8:29:99:201,0,576 0/1:12,9:21:99:244,0,315 0/1:18,7:25:99:162,0,552 1/1:0,23:23:66.18:782,66,0 1/1:0,16:16:42.12:489,42,0 1/1:0,22:22:57.15:651,57,0 0/0:17,0:17:39.11:0,39,470 0/1:6,9:15:99:275,0,174 0/1:9,14:23:99:381,0,272 0/1:26,29:55:99:661,0,710 1/1:1,19:20:20.19:602,20,0 0/1:8,7:15:99:210,0,255 1/1:0,8:8:21.05:237,21,0 1/1:0,16:16:45.12:510,45,0 1/1:0,34:34:84.20:1016,84,0 0/1:14,15:29:99:320,0,396 1/1:0,17:17:42.12:507,42,0 0/0:50,0:50:99:0,135,1694 1/1:0,20:20:51.14:617,51,0 1/1:0,24:24:63.16:763,63,0 1/1:0,24:24:60.17:730,60,0 0/1:12,5:17:99:133,0,281 0/1:6,9:15:99:260,0,162 1/1:0,18:18:48.14:585,48,0 1/1:0,16:16:39.10:464,39,0 1/1:0,14:14:30.09:371,30,0 0/0:36,0:36:90.28:0,90,1130 1/1:0,22:22:60.11:667,60,0 0/0:17,0:17:48.14:0,48,579 0/0:26,0:26:66.21:0,66,842 0/1:16,9:25:99:220,0,481 1/1:0,24:24:57.16:681,57,0 1/1:0,19:19:48.11:581,48,0 1/1:0,14:14:42.11:475,42,0 1/1:0,17:17:51.12:559,51,0 1/1:0,10:10:27.08:319,27,0 1/1:0,13:13:33.09:395,33,0 11 400024 . C T 295.11 . AC=3;AF=0.036;AN=84;BaseQRankSum=-0.381;DP=588;Dels=0.00;FS=2.225;HRun=0;HaplotypeScore=0.3208;InbreedingCoeff=-0.0383;MQ=58.44;MQ0=0;MQRankSum=0.667;QD=6.71;ReadPosRankSum=-0.258 GT:AD:DP:GQ:PL 0/0:14,0:14:39.11:0,39,457 0/0:13,0:13:36.11:0,36,433 0/0:12,0:12:30.08:0,30,356 0/0:29,0:29:78.25:0,78,1007 0/0:12,0:12:33.10:0,33,418 0/0:17,0:17:45.14:0,45,573 0/0:13,0:13:39.11:0,39,465 0/0:20,0:20:54.16:0,54,673 0/0:14,0:14:36.11:0,36,433 0/0:10,0:10:27.07:0,27,307 0/0:12,0:12:27.08:0,27,336 0/0:8,0:8:24.07:0,24,282 0/0:9,0:9:24.07:0,24,285 0/0:8,0:8:24.07:0,24,281 0/1:21,10:31:99:231,0,513 0/1:4,1:5:15.55:16,0,122 0/0:14,0:14:39.11:0,39,467 0/0:9,0:9:21.06:0,21,238 0/0:29,0:29:66.16:0,66,781 0/0:31,0:31:78.23:0,78,951 0/0:18,0:18:48.13:0,48,568 0/0:13,0:13:30.08:0,30,369 0/0:27,0:27:75.24:0,75,968 0/0:9,0:9:27.08:0,27,327 0/0:7,0:7:21.05:0,21,256 0/0:13,0:13:33.10:0,33,422 0/0:15,0:15:36.10:0,36,439 0/0:12,0:12:33.06:0,33,368 0/0:10,0:10:27.08:0,27,325 0/0:12,0:12:33.09:0,33,386 0/0:8,0:8:24.06:0,24,268 0/0:22,0:22:54.12:0,54,636 0/0:14,0:14:39.10:0,39,456 0/0:11,0:11:27.07:0,27,314 0/0:8,0:8:24.07:0,24,285 0/1:4,4:8:78.98:123,0,79 0/0:23,0:23:63.18:0,63,743 0/0:11,0:11:30.08:0,30,345 0/0:11,0:11:27.08:0,27,328 0/0:15,0:15:45.11:0,45,495 0/0:4,0:4:12.03:0,12,134 0/0:7,0:7:18.05:0,18,206 11 400040 . A G 1727.97 . AC=14;AF=0.167;AN=84;BaseQRankSum=-0.818;DP=548;Dels=0.00;FS=16.766;HRun=1;HaplotypeScore=0.4225;InbreedingCoeff=0.2514;MQ=58.40;MQ0=0;MQRankSum=0.731;QD=14.90;ReadPosRankSum=-2.127 GT:AD:DP:GQ:PL 0/1:8,8:16:99:167,0,261 0/0:16,0:16:36.11:0,36,469 0/0:9,0:9:21.07:0,21,266 0/0:31,0:31:75.21:0,75,923 0/1:5,7:12:99:233,0,148 0/0:20,0:20:45.13:0,45,594 0/0:10,0:10:30.09:0,30,368 0/0:17,0:18:45.14:0,45,571 0/0:13,0:13:27.06:0,27,339 0/0:8,0:8:18.06:0,18,227 0/0:13,0:13:33.09:0,33,392 0/0:8,0:8:24.07:0,24,289 0/0:10,0:10:27.09:0,27,341 0/0:10,0:10:24.08:0,24,305 0/0:31,0:31:78.22:0,78,958 0/0:9,0:9:27.08:0,27,330 0/0:13,0:13:36.11:0,36,444 0/0:6,0:6:18.05:0,18,218 0/0:22,0:22:51.16:0,51,633 0/0:26,0:26:66.18:0,66,819 0/0:17,0:17:45.14:0,45,570 0/0:13,0:13:33.10:0,33,405 0/0:25,0:25:72.20:0,72,871 0/0:6,0:6:15.04:0,15,181 0/0:10,0:10:24.07:0,24,295 0/1:3,7:10:86.61:209,0,87 0/0:12,0:12:30.09:0,30,374 0/0:12,0:12:30.09:0,30,366 0/0:11,0:11:33.10:0,33,401 0/1:6,7:13:99:156,0,157 0/0:9,0:9:24.07:0,24,294 0/0:16,0:16:45.14:0,45,561 0/1:6,7:13:99:172,0,148 0/1:5,1:6:21.94:22,0,127 0/1:7,2:9:50.03:50,0,227 1/1:0,7:7:21.06:236,21,0 0/0:17,0:17:48.15:0,48,582 0/0:10,0:11:27.08:0,27,333 0/1:5,4:9:98.57:99,0,162 1/1:0,12:12:33.10:403,33,0 0/1:0,3:3:0.51:101,9,0 0/1:4,2:6:52.24:52,0,122 11 400109 . A G 10415.77 . 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G A 19954.70 . 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A C 61970.92 . 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T C 53047.97 . 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C G 271.16 . 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A G 100350.42 . 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T G 180.22 . AC=13;AF=0.155;AN=84;BaseQRankSum=-10.350;DP=455;Dels=0.00;FS=34.360;HRun=2;HaplotypeScore=0.3680;InbreedingCoeff=-0.2376;MQ=57.30;MQ0=0;MQRankSum=1.019;QD=1.18;ReadPosRankSum=-3.427 GT:AD:DP:GQ:PL 0/1:3,5:8:19.68:20,0,28 0/0:8,1:9:18.04:0,18,201 0/0:5,1:6:12:0,12,120 0/1:4,9:13:19.31:19,0,125 0/1:7,9:16:7.61:8,0,161 0/0:3,4:7:9:0,9,80 0/0:6,4:10:12.04:0,12,143 0/0:7,7:14:18.01:0,18,182 0/1:4,3:7:30.36:30,0,102 0/0:5,2:7:15.04:0,15,173 0/0:9,7:16:3.36:0,3,252 0/0:5,3:8:15.01:0,15,158 0/1:7,4:11:7.98:8,0,176 0/1:4,7:11:34.23:34,0,119 0/0:18,14:32:27.40:0,27,482 0/1:8,5:13:37.89:38,0,208 0/0:3,4:7:9.02:0,9,97 0/0:7,0:7:18.02:0,18,186 0/0:5,5:10:9.03:0,9,106 0/0:13,4:17:27.06:0,27,302 0/1:6,2:8:9.62:10,0,151 0/0:8,2:10:18.04:0,18,202 0/1:7,10:17:22.32:22,0,196 0/1:6,4:10:9.58:10,0,163 0/0:6,2:9:15.02:0,15,146 0/0:3,2:5:6:0,6,55 0/1:5,4:9:10.61:11,0,149 0/0:9,3:12:1.90:3,0,208 0/0:1,4:5:2.98:0,3,22 0/0:6,3:9:12.03:0,12,133 0/0:11,3:14:27.07:0,27,307 0/0:5,9:14:12.02:0,12,125 0/1:9,4:13:38.09:38,0,164 0/0:4,3:7:12.03:0,12,126 0/0:6,5:11:15.04:0,15,166 0/0:3,0:3:6:0,6,54 0/1:10,7:17:66.30:66,0,190 0/0:10,2:12:30.09:0,30,346 0/0:7,4:11:1.88:3,0,195 0/0:8,6:14:2.34:0,2,195 0/0:3,5:8:9.02:0,9,94 0/0:3,3:6:9.02:0,9,101 11 490035 . C T 4576.06 . 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G A 3426.05 . 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C T 3907.55 . AC=8;AF=0.095;AN=84;BaseQRankSum=-8.634;DP=1334;Dels=0.00;FS=2.381;HRun=0;HaplotypeScore=2.4809;InbreedingCoeff=0.4472;MQ=58.72;MQ0=0;MQRankSum=1.175;QD=19.74;ReadPosRankSum=-1.172 GT:AD:DP:GQ:PL 0/0:24,0:24:72.20:0,72,873 0/0:22,0:22:60.18:0,60,721 0/0:16,0:16:45.14:0,45,545 0/0:64,0:64:99:0,178,2238 0/0:71,0:71:99:0,187,2392 0/0:43,0:43:99:0,126,1632 0/0:32,0:32:81.27:0,81,1097 0/0:35,0:35:99:0,99,1289 0/0:28,0:28:75.21:0,75,893 0/0:19,0:19:54.13:0,54,612 0/0:23,0:23:63.18:0,63,747 0/0:13,0:13:36.11:0,36,440 0/0:20,0:20:57.16:0,57,678 0/0:23,0:23:63.19:0,63,756 0/0:98,0:98:99:0,259,3110 0/0:26,0:26:75.20:0,75,871 0/1:10,3:13:61.08:61,0,299 0/0:11,0:11:30.09:0,30,369 0/0:29,0:29:75.22:0,75,908 0/0:62,0:63:99:0,153,1915 0/1:22,27:49:99:772,0,550 1/1:0,47:47:99:1485,129,0 0/0:74,0:74:99:0,208,2650 0/0:32,0:32:96.30:0,96,1224 0/0:49,0:49:99:0,135,1719 0/0:32,0:32:87.27:0,87,1098 0/0:22,0:22:63.17:0,63,736 0/0:13,0:13:36.08:0,36,421 0/0:17,0:17:48.13:0,48,570 0/0:27,0:27:69.21:0,69,850 0/0:20,0:20:57.18:0,57,722 0/1:22,24:46:99:664,0,637 0/0:35,0:35:99:0,99,1161 0/0:15,0:15:42.13:0,42,515 0/0:14,0:14:36.10:0,36,432 0/0:24,0:24:66.16:0,66,786 0/0:39,0:39:99:0,102,1245 0/0:19,0:19:54.16:0,54,651 0/0:27,0:27:78.24:0,78,943 0/1:13,8:21:99:219,0,398 0/0:17,0:17:51.14:0,51,585 1/1:0,22:22:60.17:706,60,0 11 499066 . C T 1204.52 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.486;DP=1394;Dels=0.00;FS=0.671;HRun=0;HaplotypeScore=2.5542;InbreedingCoeff=-0.0244;MQ=58.85;MQ0=0;MQRankSum=0.473;QD=12.81;ReadPosRankSum=0.394 GT:AD:DP:GQ:PL 0/0:26,0:26:63.19:0,63,761 0/0:25,0:25:66.20:0,66,808 0/0:15,0:16:39.12:0,39,490 0/0:67,0:67:99:0,187,2249 0/0:72,1:73:99:0,171,2345 0/0:48,0:48:99:0,135,1731 0/0:34,0:34:78.22:0,78,993 0/0:40,0:40:99:0,111,1372 0/0:30,0:30:84.24:0,84,987 0/0:21,0:21:63.15:0,63,702 0/0:25,0:25:63.18:0,63,738 0/0:12,0:12:36.11:0,36,426 0/0:22,0:22:57.17:0,57,680 0/0:29,0:29:69.20:0,69,816 0/0:95,0:95:99:0,250,2948 0/0:24,0:25:57.17:0,57,673 0/0:16,0:16:42.09:0,42,479 0/0:10,0:10:27.08:0,27,321 0/0:31,0:31:78.21:0,78,899 0/0:64,0:65:99:0,150,1808 0/1:21,26:47:99:674,0,556 0/1:25,22:47:99:593,0,705 0/0:69,1:72:99:0,165,2438 0/0:35,0:35:96.27:0,96,1187 0/0:49,0:49:99:0,135,1655 0/0:32,0:33:87.26:0,87,1071 0/0:22,0:22:57.17:0,57,680 0/0:14,0:14:42.11:0,42,494 0/0:18,0:18:48.12:0,48,551 0/0:26,0:26:69.18:0,69,805 0/0:20,0:20:54.16:0,54,644 0/0:47,0:47:99:0,120,1452 0/0:37,0:37:99:0,102,1212 0/0:18,0:18:51.13:0,51,579 0/0:17,0:17:45.12:0,45,521 0/0:28,0:28:75.21:0,75,882 0/0:40,0:41:99:0,108,1268 0/0:21,0:21:60.17:0,60,715 0/0:29,0:29:75.22:0,75,882 0/0:24,0:24:69.19:0,69,813 0/0:19,0:19:54.15:0,54,625 0/0:20,0:20:48.15:0,48,598 11 499120 . G A 2535.76 . AC=7;AF=0.083;AN=84;BaseQRankSum=3.659;DP=1743;Dels=0.00;FS=1.295;HRun=0;HaplotypeScore=1.3852;InbreedingCoeff=0.2208;MQ=58.89;MQ0=0;MQRankSum=-0.313;QD=15.46;ReadPosRankSum=1.206 GT:AD:DP:GQ:PL 0/0:23,0:23:60.17:0,60,723 0/0:34,0:34:84.22:0,84,994 0/0:21,0:21:57.14:0,57,639 0/0:96,0:96:99:0,250,3120 0/0:81,0:81:99:0,217,2674 0/0:71,0:71:99:0,181,2242 0/0:54,0:54:99:0,153,1812 0/0:56,0:56:99:0,147,1801 0/0:24,0:24:66.19:0,66,794 0/0:27,0:27:72.17:0,72,828 0/0:25,0:25:66.20:0,66,811 0/0:14,0:14:42.11:0,42,465 0/0:24,0:24:63.18:0,63,767 0/0:33,0:33:84.22:0,84,1002 0/0:104,0:104:99:0,280,3352 0/0:36,0:36:99:0,99,1121 0/0:25,0:25:69.18:0,69,794 0/1:6,11:17:99:306,0,156 0/1:32,23:55:99:670,0,809 0/0:64,0:65:99:0,165,1973 0/0:71,0:72:99:0,199,2325 0/0:43,0:43:99:0,117,1396 0/0:100,0:101:99:0,259,3214 0/0:59,0:59:99:0,159,1960 0/0:61,0:61:99:0,159,1929 0/0:56,0:56:99:0,147,1884 0/0:22,0:23:54.16:0,54,667 0/0:25,0:25:63.17:0,63,749 0/0:14,0:14:42.11:0,42,475 0/1:12,10:22:99:286,0,314 1/1:0,21:21:57.17:707,57,0 0/0:58,1:59:99:0,122,1870 0/0:45,0:45:99:0,111,1333 0/0:27,0:27:72.19:0,72,824 0/0:25,0:25:66.19:0,66,790 0/0:26,0:26:72.19:0,72,847 0/0:47,0:47:99:0,129,1481 0/0:29,0:29:81.22:0,81,935 0/0:33,0:33:90.24:0,90,1066 0/1:14,9:23:99:269,0,371 0/1:12,14:26:99:417,0,321 0/0:21,0:21:57.14:0,57,641 11 534242 . A G 11244.50 . AC=23;AF=0.274;AN=84;BaseQRankSum=11.155;DP=1715;Dels=0.00;FS=0.427;HRun=0;HaplotypeScore=1.2269;InbreedingCoeff=-0.0178;MQ=58.42;MQ0=0;MQRankSum=5.033;QD=14.43;ReadPosRankSum=0.249 GT:AD:DP:GQ:PL 0/0:35,0:35:96.30:0,96,1181 0/0:39,0:39:99:0,108,1274 0/0:35,0:35:84.26:0,84,1080 0/1:31,25:56:99:756,0,926 0/1:46,25:71:99:740,0,1348 0/0:53,0:53:99:0,132,1708 0/0:48,0:48:99:0,129,1560 0/1:25,21:46:99:538,0,702 0/0:28,0:28:69.22:0,69,869 0/1:13,11:24:99:294,0,358 0/0:26,0:26:75.23:0,75,910 0/1:15,5:20:99:105,0,461 1/1:0,28:28:69.22:895,69,0 0/0:38,0:38:90.27:0,90,1114 0/0:118,0:118:99:0,295,3586 0/1:16,16:32:99:426,0,460 0/1:20,16:36:99:463,0,538 0/0:32,0:32:87.27:0,87,1064 0/1:19,25:44:99:671,0,509 0/1:37,35:72:99:939,0,953 0/1:23,25:48:99:649,0,687 1/1:0,28:28:75.22:914,75,0 0/0:86,0:87:99:0,226,2827 0/0:28,0:28:72.22:0,72,902 0/0:36,0:36:96.30:0,96,1216 0/0:38,0:38:99:0,99,1236 0/0:26,0:26:66.20:0,66,814 0/1:14,9:24:99:256,0,412 0/0:33,0:33:87.27:0,87,1056 0/0:38,0:38:99:0,114,1324 0/0:33,0:33:99:0,99,1179 0/1:31,28:59:99:752,0,759 0/1:17,22:39:99:627,0,417 0/1:14,20:34:99:516,0,417 0/1:23,11:34:99:315,0,666 0/0:31,0:31:87.25:0,87,1038 0/0:55,0:55:99:0,156,1889 0/0:46,0:46:99:0,120,1490 0/0:33,0:33:93.29:0,93,1142 0/1:23,15:38:99:369,0,663 0/1:12,13:25:99:347,0,332 1/1:0,21:21:54.14:673,54,0 11 540719 . G A 535.01 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.463;DP=1003;Dels=0.00;FS=3.887;HRun=0;HaplotypeScore=0.8016;InbreedingCoeff=-0.0245;MQ=59.11;MQ0=0;MQRankSum=-0.880;QD=8.23;ReadPosRankSum=0.738 GT:AD:DP:GQ:PL 0/0:12,0:12:36.10:0,36,422 0/0:19,0:19:45.13:0,45,549 0/0:17,0:17:48.13:0,48,571 0/0:49,0:49:99:0,117,1518 0/0:50,0:50:99:0,132,1704 0/1:23,17:41:99:459,0,616 0/1:17,7:24:99:138,0,456 0/0:36,0:36:96.29:0,96,1233 0/0:15,0:15:42.12:0,42,497 0/0:22,0:22:54.15:0,54,665 0/0:18,0:18:51.13:0,51,590 0/0:13,0:13:36.06:0,36,415 0/0:9,0:9:24.07:0,24,283 0/0:15,0:15:45.13:0,45,527 0/0:58,0:60:99:0,141,1717 0/0:20,0:20:54.16:0,54,653 0/0:12,0:12:36.09:0,36,407 0/0:21,0:21:57.15:0,57,655 0/0:25,0:25:75.20:0,75,872 0/0:25,0:25:57.17:0,57,710 0/0:30,0:30:81.19:0,81,941 0/0:14,0:14:39.12:0,39,484 0/0:70,0:70:99:0,175,2286 0/0:38,0:38:87.28:0,87,1140 0/0:35,0:35:99:0,99,1223 0/0:31,2:33:33.45:0,33,884 0/0:16,0:16:45.13:0,45,537 0/0:16,0:16:45.14:0,45,561 0/0:14,0:14:33.10:0,33,415 0/0:13,0:13:39.11:0,39,457 0/0:12,0:12:30.06:0,30,348 0/0:29,0:29:75.23:0,75,925 0/0:20,0:20:54.15:0,54,627 0/0:16,0:17:48.14:0,48,571 0/0:12,0:12:33.09:0,33,391 0/0:27,0:27:72.21:0,72,861 0/0:18,0:18:51.14:0,51,602 0/0:21,0:21:51.14:0,51,600 0/0:12,0:12:36.11:0,36,427 0/0:21,0:21:54.16:0,54,671 0/0:11,0:11:33.10:0,33,391 0/0:21,0:21:48.13:0,48,576 11 549946 . C T 2166.51 . AC=3;AF=0.036;AN=84;BaseQRankSum=0.259;DP=1891;Dels=0.00;FS=15.040;HRun=1;HaplotypeScore=2.5784;InbreedingCoeff=-0.0371;MQ=58.87;MQ0=0;MQRankSum=0.808;QD=8.53;ReadPosRankSum=2.783 GT:AD:DP:GQ:PL 0/0:22,0:24:57.16:0,57,703 0/0:31,0:37:63.16:0,63,763 0/1:4,5:19:99:152,0,113 0/1:62,46:127:99:1367,0,1517 0/0:96,0:110:99:0,211,2775 0/0:68,0:75:99:0,163,2086 0/0:45,0:47:99:0,108,1406 0/0:53,0:56:99:0,120,1561 0/0:23,0:24:54.16:0,54,649 0/0:22,0:27:54.13:0,54,638 0/0:32,0:35:75.21:0,75,936 0/0:32,0:33:78.24:0,78,969 0/0:31,0:32:75.23:0,75,938 0/0:35,0:39:81.24:0,81,1019 0/0:94,0:101:99:0,226,2777 0/0:29,0:32:66.20:0,66,828 0/0:26,0:28:60.16:0,60,704 0/0:21,0:22:51.15:0,51,629 0/0:47,0:51:99:0,135,1690 0/0:74,0:75:99:0,162,2029 0/0:57,0:67:99:0,153,1935 0/0:31,0:33:72.18:0,72,864 0/1:59,25:108:99:723,0,1425 0/0:52,0:58:99:0,108,1424 0/0:65,0:70:99:0,129,1685 0/0:38,0:45:87.26:0,87,1144 0/0:19,0:20:48.14:0,48,582 0/0:16,0:19:36.12:0,36,464 0/0:16,0:17:27.08:0,27,335 0/0:30,0:33:75.18:0,75,895 0/0:36,0:38:87.24:0,87,1046 0/0:58,0:62:99:0,126,1596 0/0:48,0:51:99:0,111,1380 0/0:31,0:34:78.22:0,78,963 0/0:20,0:20:42.13:0,42,539 0/0:38,0:39:81.25:0,81,1009 0/0:41,0:45:99:0,102,1271 0/0:26,0:30:60.17:0,60,742 0/0:18,0:19:45.14:0,45,549 0/0:26,0:26:54.12:0,54,638 0/0:27,0:28:57.15:0,57,690 0/0:34,0:35:69.22:0,69,885 11 549959 . C T 48227.81 . AC=75;AF=0.893;AN=84;BaseQRankSum=12.855;DP=1586;Dels=0.00;FS=0.817;HRun=1;HaplotypeScore=1.1171;InbreedingCoeff=0.1289;MQ=59.12;MQ0=0;MQRankSum=-0.843;QD=31.13;ReadPosRankSum=2.143 GT:AD:DP:GQ:PL 1/1:0,22:22:63.19:751,63,0 1/1:0,30:30:84.23:1009,84,0 1/1:0,19:19:57.16:662,57,0 1/1:0,98:99:99:3475,286,0 1/1:0,81:81:99:2844,235,0 1/1:0,62:62:99:2273,181,0 1/1:0,44:44:99:1560,129,0 1/1:0,45:45:99:1541,126,0 1/1:0,19:19:57.15:657,57,0 1/1:0,26:26:66.20:801,66,0 1/1:0,26:26:75.21:896,75,0 1/1:0,31:31:87.27:1068,87,0 1/1:0,22:22:60.18:725,60,0 1/1:0,36:36:99:1316,108,0 1/1:0,87:88:99:3022,256,0 1/1:0,29:29:87.25:1040,87,0 1/1:0,31:31:90.27:1081,90,0 0/1:12,6:18:99:137,0,269 0/1:25,30:55:99:824,0,646 1/1:0,55:55:99:1973,162,0 0/1:34,27:61:99:737,0,891 0/0:35,2:37:59.23:0,59,966 1/1:0,75:75:99:2619,217,0 1/1:0,46:46:99:1554,126,0 1/1:0,54:54:99:1842,150,0 1/1:0,32:32:93.28:1136,93,0 1/1:0,16:16:45.11:522,45,0 1/1:0,24:24:66.21:816,66,0 1/1:0,12:12:36.11:433,36,0 1/1:0,30:30:81.24:960,81,0 0/1:14,20:34:99:622,0,335 0/1:28,28:56:99:780,0,651 1/1:0,36:36:99:1272,105,0 1/1:0,30:30:84.26:1036,84,0 1/1:0,18:18:54.16:647,54,0 1/1:0,33:33:93.29:1144,93,0 1/1:0,41:41:99:1368,117,0 1/1:1,29:30:59.56:948,60,0 1/1:0,16:16:39.12:468,39,0 0/1:4,11:15:89.98:359,0,90 0/1:11,8:19:99:190,0,302 1/1:0,32:32:93.28:1122,93,0 11 563257 . G A 2088.55 . AC=7;AF=0.083;AN=84;BaseQRankSum=-8.660;DP=853;Dels=0.00;FS=1.728;HRun=1;HaplotypeScore=0.5209;InbreedingCoeff=-0.0911;MQ=58.75;MQ0=0;MQRankSum=-0.308;QD=12.97;ReadPosRankSum=-0.950 GT:AD:DP:GQ:PL 0/0:16,0:16:45.13:0,45,532 0/0:11,0:11:30.10:0,30,382 0/0:11,0:11:33.10:0,33,399 0/0:39,0:39:99:0,114,1430 0/0:38,0:38:99:0,111,1429 0/0:23,0:23:69.20:0,69,887 0/0:14,0:14:42.14:0,42,552 0/0:25,0:25:69.22:0,69,914 0/0:19,0:19:57.15:0,57,678 0/0:16,0:16:42.13:0,42,537 0/0:11,0:11:33.09:0,33,395 0/0:13,0:13:39.12:0,39,482 0/0:12,0:12:36.12:0,36,456 0/0:19,0:19:51.14:0,51,595 0/1:31,24:55:99:648,0,872 0/1:9,10:19:99:293,0,227 0/0:16,0:16:42.13:0,42,532 0/1:6,11:17:99:301,0,111 0/0:26,0:26:69.21:0,69,861 0/0:35,0:35:96.29:0,96,1195 0/1:7,11:18:99:345,0,212 0/0:22,0:22:63.18:0,63,768 0/0:42,1:43:96.76:0,97,1544 0/0:17,0:17:48.15:0,48,630 0/0:20,0:20:60.19:0,60,788 0/0:24,0:24:66.21:0,66,853 0/0:24,0:24:63.18:0,63,758 0/0:19,0:19:57.18:0,57,709 0/1:7,5:12:99:119,0,213 0/0:15,0:15:45.14:0,45,549 0/0:13,0:13:36.11:0,36,454 0/1:13,12:25:99:343,0,291 0/0:22,0:22:60.19:0,60,751 0/0:13,0:13:36.11:0,36,450 0/0:15,0:15:45.14:0,45,548 0/1:8,6:15:99:153,0,219 0/0:19,0:20:48.15:0,48,599 0/0:18,0:18:42.10:0,42,497 0/0:16,0:16:42.13:0,42,521 0/0:11,0:11:21.07:0,21,258 0/0:15,0:16:39.13:0,39,498 0/0:20,0:20:51.16:0,51,640 11 610277 . T C 6749.10 . AC=77;AF=0.963;AN=80;BaseQRankSum=2.857;DP=237;Dels=0.00;FS=13.677;HRun=0;HaplotypeScore=0.1368;InbreedingCoeff=0.2137;MQ=58.66;MQ0=0;MQRankSum=1.730;QD=29.47;ReadPosRankSum=0.417 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:32,3,0 1/1:0,7:7:15.05:186,15,0 1/1:0,3:3:9.02:107,9,0 1/1:0,7:7:15.05:197,15,0 ./. 1/1:0,4:4:12.04:152,12,0 1/1:0,4:4:12.04:146,12,0 1/1:0,2:2:6.02:71,6,0 1/1:0,2:2:6.02:70,6,0 1/1:0,7:7:15.05:195,15,0 1/1:0,3:3:6.02:70,6,0 1/1:0,5:5:12.04:153,12,0 1/1:1,7:8:18.06:222,18,0 1/1:0,5:5:15.04:175,15,0 1/1:0,20:20:48.11:554,48,0 1/1:0,9:9:27.08:310,27,0 1/1:0,4:4:12.03:139,12,0 1/1:0,2:2:6.02:67,6,0 1/1:0,11:11:33.09:371,33,0 1/1:0,12:12:33.09:378,33,0 0/1:9,2:13:30.19:30,0,246 0/0:8,0:8:24.05:0,24,248 1/1:0,2:2:6.02:76,6,0 1/1:0,6:6:18.06:227,18,0 1/1:0,2:2:6.02:75,6,0 1/1:0,2:2:3.01:45,3,0 1/1:0,2:2:3.01:45,3,0 1/1:0,4:4:12.04:143,12,0 1/1:0,2:2:6.01:63,6,0 1/1:0,3:3:9.03:110,9,0 1/1:0,1:1:3.01:33,3,0 1/1:0,19:19:39.12:512,39,0 1/1:0,13:13:33.10:405,33,0 1/1:0,5:5:15.04:163,15,0 1/1:0,5:5:12.04:152,12,0 1/1:0,6:6:18.04:198,18,0 1/1:0,15:15:39.11:463,39,0 1/1:0,2:2:6.02:71,6,0 1/1:0,2:2:6.02:70,6,0 1/1:0,5:5:15.03:156,15,0 ./. 1/1:0,4:4:9.03:115,9,0 11 614864 . C T 7280.23 . AC=79;AF=0.940;AN=84;BaseQRankSum=-1.069;DP=235;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1298;InbreedingCoeff=0.1288;MQ=57.80;MQ0=0;MQRankSum=-0.251;QD=31.65;ReadPosRankSum=-0.263 GT:AD:DP:GQ:PL 1/1:0,7:7:21.07:262,21,0 1/1:0,4:4:12.04:149,12,0 1/1:0,2:2:6.02:76,6,0 1/1:0,13:13:36.11:452,36,0 1/1:0,15:15:45.14:566,45,0 1/1:0,9:9:24.08:309,24,0 1/1:0,2:2:6.02:82,6,0 1/1:0,9:9:21.06:265,21,0 1/1:0,5:5:15.05:185,15,0 1/1:0,2:2:6.02:72,6,0 1/1:0,6:6:15.02:163,15,0 1/1:0,5:5:15.05:183,15,0 0/1:2,2:4:35.73:36,0,68 1/1:0,1:1:3.01:37,3,0 1/1:0,13:13:36.11:450,36,0 1/1:0,11:11:33.10:397,33,0 1/1:0,4:4:9.02:100,9,0 1/1:0,2:2:3.01:37,3,0 1/1:0,8:8:24.08:298,24,0 1/1:0,8:8:18.05:225,18,0 0/1:5,8:13:99:198,0,121 0/0:5,0:5:15.05:0,15,190 1/1:0,7:7:21.06:255,21,0 1/1:0,5:5:15.05:198,15,0 1/1:0,7:7:18.03:199,18,0 1/1:0,9:9:24.08:319,24,0 1/1:0,2:2:6.02:69,6,0 1/1:0,6:6:15.04:180,15,0 1/1:0,3:3:9.03:111,9,0 1/1:0,2:2:6.02:72,6,0 1/1:0,2:2:6.02:76,6,0 1/1:0,4:5:12.03:132,12,0 0/1:4,3:7:87.81:95,0,88 1/1:0,2:2:6.01:64,6,0 1/1:0,7:7:18.06:224,18,0 1/1:0,7:7:18.06:231,18,0 1/1:0,4:4:12.04:146,12,0 1/1:0,1:1:3.01:37,3,0 1/1:0,2:2:6.02:76,6,0 1/1:0,1:1:3.01:36,3,0 1/1:0,5:5:12.04:147,12,0 1/1:0,3:3:6.02:69,6,0 11 614983 . A C 25.30 . AC=7;AF=0.088;AN=80;BaseQRankSum=-6.943;DP=208;Dels=0.00;FS=30.606;HRun=2;HaplotypeScore=0.1914;InbreedingCoeff=-0.2040;MQ=57.74;MQ0=0;MQRankSum=0.036;QD=0.62;ReadPosRankSum=-4.651 GT:AD:DP:GQ:PL ./. 0/0:3,0:3:6.02:0,6,72 0/0:1,0:2:3.01:0,3,32 0/0:13,4:17:16.42:0,16,400 0/0:10,6:16:6.36:0,6,276 0/1:4,1:5:7.66:8,0,115 0/0:1,4:5:3.01:0,3,38 0/0:7,3:10:1.28:5,0,166 0/0:2,0:2:6.02:0,6,65 0/0:2,1:3:3:0,3,29 0/0:1,3:4:3.01:0,3,31 0/0:5,0:5:12.02:0,12,122 0/0:1,1:2:3.01:0,3,33 ./. 0/0:8,3:11:24.07:0,24,284 0/0:5,1:6:12.01:0,12,121 0/0:1,1:2:3.01:0,3,35 0/0:1,0:1:3.01:0,3,36 0/1:3,2:5:23.22:23,0,95 0/0:10,1:11:24.08:0,24,309 0/1:3,4:7:13.66:14,0,93 0/1:3,1:4:21.57:22,0,62 0/0:9,6:15:24.06:0,24,276 0/0:5,2:7:15.04:0,15,176 0/0:3,1:4:9:0,9,90 0/1:4,5:9:7.66:8,0,122 0/0:1,0:1:3.01:0,3,32 0/0:2,2:4:6.02:0,6,73 0/0:2,1:3:3.01:0,3,37 0/0:1,0:1:3.01:0,3,33 0/0:1,0:1:3.01:0,3,30 0/1:1,2:3:27.42:32,0,27 0/0:5,0:5:15.01:0,15,139 0/0:3,0:3:9.02:0,9,102 0/0:1,1:2:3.01:0,3,38 0/1:5,3:8:14.79:15,0,98 0/0:3,0:3:9.03:0,9,111 0/0:1,0:1:3:0,3,26 0/0:4,1:5:9.02:0,9,108 0/0:3,0:3:9.03:0,9,108 0/0:1,1:2:3.01:0,3,35 0/0:5,1:6:15.05:0,15,186 11 617967 . C G 28582.37 . AC=84;AF=1.000;AN=84;DP=816;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3411;InbreedingCoeff=-0.0010;MQ=58.13;MQ0=0;QD=35.03 GT:AD:DP:GQ:PL 1/1:0,12:12:36.11:456,36,0 1/1:0,21:21:48.15:628,48,0 1/1:0,16:16:42.13:532,42,0 1/1:0,37:37:99:1291,102,0 1/1:0,23:23:69.22:914,69,0 1/1:0,21:21:60.17:809,60,0 1/1:0,24:24:63.21:858,63,0 1/1:0,30:30:81.26:1064,81,0 1/1:0,16:16:45.14:557,45,0 1/1:0,10:11:27.09:341,27,0 1/1:0,13:13:39.09:469,39,0 1/1:0,14:14:36.12:477,36,0 1/1:0,15:15:42.13:525,42,0 1/1:0,17:17:48.15:607,48,0 1/1:0,61:61:99:2006,156,0 1/1:0,12:12:30.10:395,30,0 1/1:0,19:19:54.16:659,54,0 1/1:0,9:9:27.09:345,27,0 1/1:0,23:24:66.17:803,66,0 1/1:0,28:28:81.25:1011,81,0 1/1:0,29:29:78.25:1016,78,0 1/1:0,18:18:51.16:636,51,0 1/1:0,23:23:66.22:891,66,0 1/1:0,19:19:51.17:688,51,0 1/1:0,32:32:87.28:1192,87,0 1/1:0,20:20:51.17:685,51,0 1/1:0,5:5:12.04:157,12,0 1/1:0,17:17:45.13:565,45,0 1/1:0,15:15:42.14:549,42,0 1/1:0,15:15:45.14:568,45,0 1/1:0,15:15:45.13:556,45,0 1/1:0,20:20:51.16:634,51,0 1/1:0,25:25:66.20:823,66,0 1/1:0,7:7:18.06:237,18,0 1/1:0,15:15:39.13:511,39,0 1/1:0,12:12:36.11:450,36,0 1/1:0,26:26:72.21:893,72,0 1/1:0,18:18:45.14:563,45,0 1/1:0,17:17:48.15:619,48,0 1/1:0,17:17:48.15:586,48,0 1/1:0,17:17:48.15:602,48,0 1/1:0,11:11:33.10:414,33,0 11 618013 . C T 4455.13 . AC=19;AF=0.226;AN=84;BaseQRankSum=-6.883;DP=855;Dels=0.00;FS=1.241;HRun=0;HaplotypeScore=0.9749;InbreedingCoeff=-0.1535;MQ=58.59;MQ0=0;MQRankSum=2.835;QD=13.42;ReadPosRankSum=0.479 GT:AD:DP:GQ:PL 0/0:10,0:10:30.08:0,30,361 0/0:17,0:17:48.13:0,48,562 0/0:16,0:16:48.12:0,48,561 0/1:23,17:40:99:460,0,676 0/1:13,16:29:99:419,0,384 0/0:30,0:30:90.25:0,90,1122 0/0:37,0:37:99:0,108,1324 0/1:16,15:31:99:346,0,519 0/0:19,0:19:51.14:0,51,610 0/1:4,5:9:69.73:127,0,70 0/0:14,0:14:36.07:0,36,402 0/1:8,5:13:99:129,0,228 0/1:5,8:13:99:216,0,148 0/0:12,0:12:33.07:0,33,367 0/0:57,0:57:99:0,147,1745 0/1:6,8:14:99:174,0,145 0/1:6,9:15:99:236,0,164 0/0:7,0:7:21.06:0,21,254 0/1:11,16:27:99:442,0,293 0/1:14,13:27:99:335,0,350 0/0:17,0:17:45.12:0,45,521 0/0:24,0:24:66.19:0,66,784 0/0:37,1:38:82.81:0,83,1402 0/0:25,0:25:72.16:0,72,860 0/0:31,0:31:84.26:0,84,1072 0/0:25,0:25:72.22:0,72,912 0/1:4,4:9:99:113,0,107 0/1:9,11:20:99:284,0,243 0/1:4,6:10:99:176,0,102 0/0:16,0:16:48.14:0,48,567 0/0:12,0:12:36.10:0,36,429 0/0:24,0:24:69.18:0,69,788 0/0:26,0:26:69.15:0,69,806 0/1:6,9:15:99:205,0,138 0/1:13,7:20:99:193,0,338 0/0:9,0:9:27.09:0,27,344 0/0:33,0:33:84.25:0,84,1047 0/0:13,0:13:39.07:0,39,429 0/0:11,0:11:33.08:0,33,375 0/1:9,7:17:99:203,0,227 0/1:9,1:10:8.49:8,0,281 1/1:0,13:13:36.08:390,36,0 11 618063 . G C 41.16 . AC=4;AF=0.048;AN=84;BaseQRankSum=-7.773;DP=893;Dels=0.00;FS=162.414;HRun=2;HaplotypeScore=1.5886;InbreedingCoeff=-0.0983;MQ=58.99;MQ0=0;MQRankSum=0.306;QD=0.78;ReadPosRankSum=-7.029 GT:AD:DP:GQ:PL 0/1:7,6:13:12.90:13,0,250 0/0:11,1:12:30.09:0,30,358 0/0:11,5:16:24.07:0,24,289 0/0:52,13:65:99:0,123,1724 0/0:34,12:46:70.57:0,71,1111 0/0:24,7:31:41.55:0,42,827 0/0:30,8:38:84.25:0,84,1075 0/0:15,4:20:39.11:0,39,492 0/0:8,2:10:2.28:2,0,235 0/0:8,3:11:21.06:0,21,255 0/0:13,1:14:33.08:0,33,396 0/0:8,2:10:1.89:3,0,211 0/1:9,3:12:34.19:34,0,208 0/0:11,3:14:33.10:0,33,413 0/0:43,9:52:99:0,114,1396 0/0:9,4:13:27.09:0,27,345 0/0:14,0:14:33.10:0,33,398 0/0:7,3:10:18.05:0,18,217 0/0:18,0:18:51.14:0,51,619 0/0:31,4:36:69.18:0,69,831 0/0:22,0:22:60.14:0,60,692 0/0:14,2:16:39.08:0,39,459 0/0:30,11:41:78.23:0,78,992 0/0:32,6:38:87.27:0,87,1129 0/0:22,7:29:51.16:0,51,671 0/0:32,6:38:84.24:0,84,1053 0/0:2,1:3:6.02:0,6,72 0/0:12,0:12:30.09:0,30,371 0/1:10,7:17:36.93:37,0,329 0/0:12,4:16:33.09:0,33,396 0/0:3,0:3:6.02:0,6,73 0/0:17,4:22:51.12:0,51,598 0/0:19,5:24:0.79:7,0,534 0/0:13,3:16:7.46:0,7,391 0/0:12,5:17:33.10:0,33,404 0/1:9,2:11:37.59:38,0,259 0/0:23,3:26:54.14:0,54,622 0/0:16,4:21:48.13:0,48,577 0/0:12,2:14:3.46:0,3,338 0/0:18,4:22:22.43:0,22,491 0/0:12,3:15:33.07:0,33,381 0/0:8,3:11:2.30:2,0,284 11 618063 . G GC 32.95 . 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C T 238.38 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.259;DP=1268;Dels=0.00;FS=7.719;HRun=1;HaplotypeScore=0.7857;InbreedingCoeff=-0.0121;MQ=59.04;MQ0=0;MQRankSum=0.926;QD=14.02;ReadPosRankSum=-0.019 GT:AD:DP:GQ:PL 0/0:28,0:28:72.23:0,72,923 0/0:21,0:21:57.17:0,57,717 0/0:23,0:23:57.17:0,57,707 0/0:60,0:60:99:0,153,2017 0/0:85,0:85:99:0,217,2924 0/0:46,0:46:99:0,111,1506 0/0:50,0:50:99:0,111,1508 0/0:32,0:32:75.25:0,75,1030 0/0:26,0:26:69.22:0,69,891 0/0:15,0:15:42.13:0,42,523 0/0:15,0:15:42.13:0,42,535 0/0:17,0:17:45.14:0,45,572 0/0:21,0:21:60.17:0,60,744 0/0:34,0:34:84.27:0,84,1102 0/0:62,0:62:99:0,156,2002 0/0:23,0:23:57.14:0,57,695 0/0:23,0:23:66.19:0,66,814 0/0:17,0:17:48.15:0,48,611 0/0:32,0:32:75.23:0,75,945 0/0:37,0:37:99:0,99,1257 0/0:30,0:30:84.26:0,84,1054 0/0:20,0:20:54.17:0,54,700 0/0:67,0:67:99:0,175,2343 0/0:21,0:21:48.15:0,48,636 0/0:56,0:56:99:0,150,2010 0/0:37,0:37:99:0,102,1348 0/0:9,0:9:21.07:0,21,270 0/0:18,0:18:48.15:0,48,607 0/0:28,0:28:69.21:0,69,863 0/0:28,0:28:69.21:0,69,889 0/1:8,9:17:99:285,0,227 0/0:35,0:35:87.27:0,87,1112 0/0:18,0:18:51.16:0,51,639 0/0:23,0:23:57.18:0,57,740 0/0:23,0:23:60.19:0,60,762 0/0:26,0:26:66.18:0,66,834 0/0:31,0:32:84.26:0,84,1047 0/0:30,0:30:75.24:0,75,966 0/0:27,0:27:66.21:0,66,844 0/0:20,0:20:54.17:0,54,687 0/0:19,0:19:57.17:0,57,700 0/0:17,0:17:51.15:0,51,634 11 619789 . T G 12310.98 . AC=60;AF=0.714;AN=84;BaseQRankSum=8.457;DP=542;Dels=0.00;FS=9.936;HRun=1;HaplotypeScore=0.2522;InbreedingCoeff=-0.0525;MQ=58.50;MQ0=0;MQRankSum=0.636;QD=24.19;ReadPosRankSum=0.358 GT:AD:DP:GQ:PL 1/1:0,4:4:9.03:119,9,0 1/1:0,14:14:39.12:487,39,0 1/1:0,14:14:36.11:456,36,0 0/1:16,9:25:99:234,0,459 0/1:12,15:27:99:499,0,347 1/1:0,14:14:42.14:565,42,0 1/1:0,13:13:39.12:500,39,0 0/1:8,10:18:99:304,0,234 1/1:0,4:4:12.04:153,12,0 0/1:6,5:11:99:135,0,183 1/1:0,10:10:24.07:304,24,0 0/1:1,8:9:7.27:265,0,7 0/0:15,0:15:45.13:0,45,529 1/1:0,12:12:33.09:388,33,0 1/1:1,35:36:93.26:1124,93,0 0/1:4,5:9:99:149,0,115 0/1:7,3:10:65.55:66,0,201 1/1:0,9:9:27.08:320,27,0 0/1:13,8:21:99:213,0,344 0/1:10,7:17:99:217,0,283 0/1:8,7:15:99:211,0,229 0/0:8,0:8:24.07:0,24,280 1/1:0,25:26:75.21:959,75,0 1/1:0,9:9:27.08:344,27,0 1/1:0,12:12:33.10:436,33,0 1/1:0,8:8:24.08:323,24,0 0/1:3,3:6:92:93,0,92 0/1:6,5:11:99:155,0,183 0/1:11,7:18:99:200,0,322 1/1:0,12:12:33.10:413,33,0 1/1:0,9:9:24.08:302,24,0 1/1:0,17:17:48.14:585,48,0 0/1:7,4:11:81.49:81,0,158 0/1:8,2:10:47.02:47,0,259 0/1:4,2:6:59.75:60,0,130 1/1:0,5:5:15.04:179,15,0 1/1:0,17:18:42.12:498,42,0 1/1:0,15:15:39.12:479,39,0 1/1:0,9:9:24.08:299,24,0 0/1:8,2:10:50.83:51,0,210 0/1:1,4:5:24.94:98,0,25 0/0:10,0:10:27.08:0,27,318 11 653968 . T C 9739.28 . AC=13;AF=0.155;AN=84;BaseQRankSum=11.068;DP=2696;Dels=0.00;FS=0.656;HRun=0;HaplotypeScore=1.8276;InbreedingCoeff=-0.0011;MQ=58.94;MQ0=0;MQRankSum=-0.494;QD=14.76;ReadPosRankSum=-0.287 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,114,1408 0/0:58,0:58:99:0,141,1758 0/0:39,0:39:99:0,108,1320 0/0:149,0:149:99:0,373,4728 0/0:124,0:124:99:0,331,4135 0/0:85,0:85:99:0,223,2892 0/0:74,0:74:99:0,172,2247 0/0:96,0:96:99:0,238,3076 0/0:53,0:53:99:0,126,1612 0/0:47,0:47:99:0,126,1528 0/1:25,26:51:99:701,0,711 0/0:36,0:36:93.26:0,93,1111 0/0:31,0:31:87.26:0,87,1044 0/0:45,0:45:99:0,126,1531 0/1:70,76:146:99:1988,0,1848 0/1:19,21:40:99:588,0,543 0/1:29,17:46:99:477,0,824 0/0:26,0:26:69.20:0,69,841 0/0:82,0:82:99:0,217,2662 0/0:120,0:120:99:0,316,3900 0/0:84,1:85:99:0,220,2698 0/0:69,0:69:99:0,175,2146 0/0:172,0:172:99:0,430,5421 0/0:81,0:81:99:0,196,2503 0/0:90,0:90:99:0,226,2843 0/0:69,0:70:99:0,169,2122 0/1:20,10:30:99:289,0,606 0/0:36,0:36:99:0,99,1188 0/1:26,25:52:99:696,0,716 0/1:18,28:46:99:816,0,429 0/0:41,0:41:99:0,111,1348 0/0:108,1:109:99:0,271,3376 0/1:31,28:59:99:771,0,821 0/0:30,0:30:81.24:0,81,983 0/0:40,0:40:99:0,114,1390 0/0:43,0:43:99:0,120,1457 0/1:41,41:82:99:1229,0,1026 0/1:23,14:37:99:420,0,634 0/0:35,0:35:99:0,99,1184 0/1:19,18:37:99:533,0,501 0/0:27,0:27:72.21:0,72,867 1/1:0,34:34:96.31:1232,96,0 11 695835 . C T 38.38 . AC=2;AF=0.056;AN=36;BaseQRankSum=-0.182;DP=38;Dels=0.00;FS=2.706;HRun=0;HaplotypeScore=0.3027;InbreedingCoeff=0.0474;MQ=55.32;MQ0=0;MQRankSum=-0.607;QD=7.68;ReadPosRankSum=0.729 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,37 ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,42 ./. ./. 0/0:2,0:2:6.02:0,6,77 ./. ./. 0/0:1,0:1:3.01:0,3,34 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.03:0,9,103 0/1:2,1:3:23.47:23,0,60 0/1:0,2:2:0.97:71,6,0 ./. 0/0:1,0:1:3.01:0,3,38 0/0:1,0:2:3.01:0,3,39 0/0:3,0:3:6:0,6,56 0/0:2,0:2:3.01:0,3,30 ./. ./. ./. ./. ./. ./. ./. ./. 0/0:5,0:5:15.04:0,15,175 0/0:1,0:1:3.01:0,3,36 0/0:1,0:1:3.01:0,3,31 ./. ./. ./. 0/0:2,0:2:6.02:0,6,67 0/0:2,0:3:6.02:0,6,68 ./. ./. 0/0:2,0:2:6.02:0,6,72 ./. ./. 11 695842 . G A 217.41 . AC=7;AF=0.175;AN=40;BaseQRankSum=-1.758;DP=36;Dels=0.00;FS=4.159;HRun=0;HaplotypeScore=0.1914;InbreedingCoeff=0.0981;MQ=55.05;MQ0=0;MQRankSum=1.516;QD=15.53;ReadPosRankSum=0.384 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,35 ./. 0/0:1,0:1:3.01:0,3,39 ./. ./. 0/0:1,0:1:3.01:0,3,41 ./. ./. 0/0:1,0:1:3.01:0,3,34 ./. ./. 0/0:1,0:1:3.01:0,3,31 ./. 0/0:2,0:2:3.01:0,3,39 0/1:2,1:3:18.64:19,0,60 1/1:0,2:2:6.02:71,6,0 ./. 0/0:1,0:1:3.01:0,3,39 0/1:2,0:2:1.76:0,3,26 0/0:4,0:4:12.03:0,12,139 0/0:1,0:1:3.01:0,3,35 ./. ./. ./. ./. ./. ./. ./. ./. 1/1:0,5:5:15.05:177,15,0 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,76 ./. ./. 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.02:0,6,72 0/0:2,0:2:3.01:0,3,33 ./. 0/0:1,0:1:3.01:0,3,35 0/1:1,1:2:30.11:30,0,33 ./. ./. 11 720127 . G A 690.15 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.939;DP=1526;Dels=0.00;FS=1.637;HRun=2;HaplotypeScore=0.9696;InbreedingCoeff=-0.0244;MQ=59.27;MQ0=0;MQRankSum=0.547;QD=10.95;ReadPosRankSum=0.475 GT:AD:DP:GQ:PL 0/0:37,0:37:96.30:0,96,1224 0/0:35,0:35:93.30:0,93,1203 0/0:29,0:29:78.24:0,78,1003 0/0:75,0:75:99:0,205,2746 0/0:51,0:51:99:0,135,1838 0/0:40,0:40:99:0,99,1354 0/0:31,0:31:93.30:0,93,1227 0/0:35,0:35:96.31:0,96,1272 0/0:32,0:32:87.28:0,87,1110 0/0:35,0:35:93.29:0,93,1171 0/0:22,0:22:63.20:0,63,798 0/0:24,0:24:69.21:0,69,862 0/0:33,0:33:84.25:0,84,1071 0/0:26,0:26:69.19:0,69,881 0/0:90,0:90:99:0,223,2869 0/0:39,0:39:99:0,105,1338 0/0:31,0:31:78.25:0,78,1002 0/0:21,0:21:54.17:0,54,692 0/0:40,1:41:99:0,111,1396 0/0:59,0:59:99:0,153,1983 0/0:55,0:55:99:0,147,1869 0/0:56,0:56:99:0,144,1835 0/0:57,0:57:99:0,163,2183 0/0:28,0:28:75.23:0,75,979 0/0:39,0:39:99:0,114,1484 0/0:24,0:24:66.20:0,66,852 0/0:15,0:15:45.14:0,45,562 0/0:24,0:24:63.20:0,63,791 0/0:23,0:23:63.20:0,63,790 0/0:24,0:24:69.17:0,69,841 0/0:30,0:30:72.23:0,72,941 0/0:62,0:62:99:0,132,1763 0/0:48,0:49:99:0,123,1576 0/0:27,0:27:69.22:0,69,881 0/0:25,0:25:72.22:0,72,900 0/0:37,0:37:93.30:0,93,1219 0/1:27,16:43:99:413,0,793 0/0:27,0:27:72.23:0,72,918 0/1:9,11:20:99:339,0,278 0/0:36,0:36:99:0,102,1263 0/0:18,0:18:51.16:0,51,644 0/0:21,0:21:51.16:0,51,650 11 720197 . C T 18569.13 . AC=41;AF=0.488;AN=84;BaseQRankSum=-14.745;DP=1372;Dels=0.00;FS=1.500;HRun=1;HaplotypeScore=1.1941;InbreedingCoeff=-0.1874;MQ=58.74;MQ0=0;MQRankSum=-0.840;QD=18.70;ReadPosRankSum=1.799 GT:AD:DP:GQ:PL 0/0:20,1:21:26.22:0,26,733 0/1:13,16:29:99:490,0,312 0/1:13,6:19:99:166,0,403 0/0:75,0:75:99:0,199,2631 0/1:23,20:43:99:559,0,738 0/1:15,21:36:99:563,0,446 0/1:21,9:30:99:200,0,656 1/1:0,39:39:96.29:1195,96,0 1/1:0,25:25:72.22:863,72,0 0/1:13,14:27:99:393,0,347 0/1:11,13:24:99:401,0,285 0/1:2,20:22:10.64:627,0,11 1/1:0,29:29:78.24:950,78,0 1/1:0,19:19:51.12:604,51,0 0/0:67,0:67:99:0,184,2315 0/1:15,14:29:99:412,0,451 0/0:32,0:32:90.28:0,90,1110 0/1:16,8:24:99:224,0,465 0/1:18,25:43:99:673,0,547 0/1:22,35:57:99:918,0,588 0/1:19,25:44:99:751,0,469 0/1:24,11:35:99:300,0,708 0/0:64,0:64:99:0,169,2296 1/1:0,38:38:99:1303,102,0 0/1:18,23:42:99:606,0,585 0/1:16,12:28:99:298,0,483 0/1:8,5:13:99:112,0,268 1/1:0,23:23:63.19:757,63,0 0/1:10,10:20:99:251,0,307 1/1:0,23:24:57.16:695,57,0 0/1:16,8:24:99:226,0,541 0/1:19,31:50:99:894,0,481 1/1:0,47:47:99:1575,132,0 0/1:12,13:25:99:375,0,385 0/1:8,15:23:99:422,0,223 0/1:11,8:19:99:202,0,364 0/0:44,0:44:99:0,123,1564 0/1:14,9:23:99:258,0,423 0/0:25,0:25:69.21:0,69,866 0/0:31,0:31:87.28:0,87,1101 0/1:8,12:20:99:306,0,250 0/0:20,0:20:60.18:0,60,731 11 721931 . C T 2210.77 . AC=13;AF=0.155;AN=84;BaseQRankSum=-1.666;DP=381;Dels=0.00;FS=4.521;HRun=0;HaplotypeScore=0.4734;InbreedingCoeff=0.3149;MQ=57.83;MQ0=0;MQRankSum=2.133;QD=20.66;ReadPosRankSum=-1.271 GT:AD:DP:GQ:PL 0/1:4,4:8:91.30:122,0,91 0/0:5,0:5:12.04:0,12,154 0/1:4,1:5:21.93:22,0,134 0/0:13,0:13:30.10:0,30,399 0/0:12,0:12:27.08:0,27,348 0/0:12,0:12:30.07:0,30,369 0/0:10,0:11:24.03:0,24,272 0/0:10,0:10:21.06:0,21,271 0/0:10,0:10:27.09:0,27,345 0/0:5,0:5:12.03:0,12,140 0/0:4,0:4:12.04:0,12,145 0/0:12,0:12:36.11:0,36,452 0/0:3,0:3:9.03:0,9,116 0/0:13,0:13:36.11:0,36,448 0/0:27,0:27:60.16:0,60,715 0/0:7,0:7:15.05:0,15,180 0/0:5,0:5:15.05:0,15,188 0/0:7,0:7:18.05:0,18,219 0/0:8,0:9:24.04:0,24,276 0/0:15,0:15:36.11:0,36,457 0/0:3,0:3:9.02:0,9,99 0/0:8,0:8:21.06:0,21,261 0/0:11,0:11:24.07:0,24,315 0/0:6,0:6:18.06:0,18,230 0/0:5,0:5:15.04:0,15,172 0/0:8,0:8:18.04:0,18,227 0/1:4,5:9:99:153,0,124 0/0:7,0:7:18.05:0,18,219 0/1:2,3:6:64.95:71,0,65 0/0:8,0:8:21.07:0,21,262 0/0:6,0:6:12.03:0,12,142 0/0:10,0:10:24.07:0,24,289 0/0:8,0:8:18.02:0,18,200 0/0:5,0:5:12.04:0,12,158 0/0:6,0:6:12.04:0,12,149 0/0:3,0:3:6.02:0,6,77 1/1:0,14:14:39.12:484,39,0 0/1:4,7:11:99:220,0,110 0/1:6,10:16:99:269,0,127 1/1:0,18:18:42.13:525,42,0 0/1:4,4:8:91:121,0,91 1/1:0,12:12:30.10:389,30,0 11 726471 . G T 26.80 . AC=6;AF=0.073;AN=82;BaseQRankSum=-1.916;DP=261;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2350;InbreedingCoeff=-0.1245;MQ=57.91;MQ0=0;MQRankSum=2.205;QD=0.72;ReadPosRankSum=-0.010 GT:AD:DP:GQ:PL 0/1:3,1:4:16.62:17,0,91 0/0:7,0:7:15.03:0,15,163 0/0:4,0:4:6:0,6,67 0/0:8,0:8:21.04:0,21,229 0/0:7,0:7:15.05:0,15,183 0/0:3,0:3:9.02:0,9,96 ./. 0/0:6,0:6:15.03:0,15,157 0/0:2,0:2:6.02:0,6,75 0/0:8,0:8:14.99:0,15,145 0/0:7,0:7:18.04:0,18,189 0/1:5,3:8:37.10:37,0,105 0/1:6,1:7:10.67:11,0,112 0/0:5,0:5:14.97:0,15,133 0/0:11,0:11:21.04:0,21,237 0/0:9,0:9:21.05:0,21,232 0/0:3,0:3:6.02:0,6,68 0/0:2,0:2:6.02:0,6,66 0/0:12,0:12:27.07:0,27,299 0/0:6,0:6:9.01:0,9,97 0/0:8,0:8:21.02:0,21,221 0/0:8,1:9:21.04:0,21,221 0/1:5,1:6:16.52:17,0,115 0/0:4,0:4:8.98:0,9,77 0/0:2,0:2:6.02:0,6,66 0/0:7,0:7:21.05:0,21,248 0/0:7,1:8:18.04:0,18,192 0/0:4,0:4:6.02:0,6,68 0/0:4,0:4:12.03:0,12,140 0/0:5,0:5:12.03:0,12,130 0/0:5,0:5:12.01:0,12,119 0/0:12,2:14:1.57:4,0,202 0/0:9,2:11:18.03:0,18,188 0/0:3,0:4:9.03:0,9,115 0/1:4,1:5:13.67:14,0,66 0/0:9,0:10:11.99:0,12,117 0/1:6,1:7:29.19:29,0,97 0/0:3,0:3:6.01:0,6,66 0/0:7,0:7:15.02:0,15,157 0/0:4,0:4:12.01:0,12,121 0/0:9,0:9:18.04:0,18,197 0/0:4,0:4:9.02:0,9,103 11 764414 . A G 1868.67 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.780;DP=1569;Dels=0.00;FS=3.529;HRun=1;HaplotypeScore=0.7883;InbreedingCoeff=-0.0244;MQ=59.22;MQ0=0;MQRankSum=0.344;QD=13.54;ReadPosRankSum=-2.236 GT:AD:DP:GQ:PL 0/0:21,0:21:60.19:0,60,757 0/0:29,0:29:87.26:0,87,1058 0/0:19,0:19:45.14:0,45,578 0/0:70,0:70:99:0,199,2510 0/0:53,0:53:99:0,150,1884 0/0:46,0:46:99:0,129,1639 0/0:33,0:33:96.28:0,96,1208 0/0:38,0:38:99:0,99,1285 0/0:33,0:33:93.27:0,93,1139 0/0:36,0:36:99:0,102,1239 0/0:29,0:29:81.25:0,81,1000 0/0:31,0:31:87.21:0,87,1036 0/0:22,0:22:66.20:0,66,812 0/0:33,0:33:96.30:0,96,1193 0/1:54,64:118:99:1738,0,1498 0/1:13,7:20:99:193,0,396 0/0:32,0:32:90.28:0,90,1104 0/0:28,0:28:78.24:0,78,974 0/0:55,0:55:99:0,153,1905 0/0:56,0:56:99:0,159,1971 0/0:60,0:60:99:0,165,2039 0/0:47,0:47:99:0,132,1612 0/0:66,0:66:99:0,181,2305 0/0:39,0:39:99:0,111,1412 0/0:44,0:44:99:0,120,1540 0/0:45,0:45:99:0,114,1492 0/0:25,0:25:75.23:0,75,930 0/0:20,0:20:60.19:0,60,749 0/0:20,1:21:27.69:0,28,693 0/0:33,0:33:87.27:0,87,1107 0/0:28,0:28:81.25:0,81,1006 0/0:49,0:49:99:0,135,1713 0/0:28,0:28:84.25:0,84,1027 0/0:27,0:27:75.21:0,75,927 0/0:20,0:20:60.18:0,60,732 0/0:40,0:40:99:0,120,1464 0/0:48,0:48:99:0,135,1665 0/0:22,0:22:66.20:0,66,798 0/0:34,0:34:96.30:0,96,1206 0/0:27,0:27:78.25:0,78,992 0/0:21,0:21:54.16:0,54,676 0/0:22,1:23:60.17:0,60,752 11 799369 . G A 547.54 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.990;DP=2566;Dels=0.00;FS=2.858;HRun=0;HaplotypeScore=2.7665;InbreedingCoeff=-0.0244;MQ=58.88;MQ0=0;MQRankSum=-0.941;QD=7.94;ReadPosRankSum=-0.238 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,117,1472 0/0:41,0:41:99:0,117,1422 0/0:36,0:36:99:0,99,1179 0/0:139,0:139:99:0,343,4480 0/0:145,0:145:99:0,367,4937 0/0:72,0:74:99:0,199,2465 0/0:62,0:62:99:0,165,2112 0/0:90,0:90:99:0,238,3070 0/0:37,0:37:99:0,102,1242 0/0:41,0:41:99:0,105,1296 0/0:45,0:45:99:0,117,1485 0/0:33,0:33:96.29:0,96,1187 0/0:32,0:32:81.25:0,81,1035 0/0:48,0:48:99:0,126,1579 0/0:145,0:146:99:0,352,4370 0/0:48,0:48:99:0,138,1703 0/0:35,0:35:93.25:0,93,1138 0/0:40,0:40:99:0,105,1303 0/0:83,0:84:99:0,217,2599 0/0:114,0:114:99:0,298,3731 0/0:71,0:71:99:0,202,2443 0/0:53,0:53:99:0,135,1709 0/0:134,0:134:99:0,358,4652 0/0:58,0:58:99:0,150,1947 0/0:96,0:96:99:0,229,3035 0/0:58,0:58:99:0,150,1962 0/1:18,11:29:99:306,0,506 0/0:44,0:44:99:0,126,1508 0/1:26,14:40:99:304,0,778 0/0:32,0:32:78.22:0,78,970 0/0:42,0:42:99:0,120,1489 0/0:101,0:102:99:0,247,3206 0/0:64,0:64:99:0,165,2008 0/0:49,0:49:99:0,132,1644 0/0:39,0:39:90.26:0,90,1135 0/0:34,0:34:93.27:0,93,1135 0/0:75,0:76:99:0,178,2225 0/0:36,0:36:93.29:0,93,1183 0/0:40,0:40:96.30:0,96,1233 0/0:51,0:52:99:0,126,1594 0/0:35,0:35:96.28:0,96,1207 0/0:46,0:46:99:0,126,1534 11 801092 . G A 1413.51 . AC=8;AF=0.095;AN=84;BaseQRankSum=-5.204;DP=510;Dels=0.00;FS=6.939;HRun=0;HaplotypeScore=0.3248;InbreedingCoeff=-0.1109;MQ=58.83;MQ0=0;MQRankSum=-0.918;QD=10.79;ReadPosRankSum=-1.781 GT:AD:DP:GQ:PL 0/0:13,0:13:30.10:0,30,390 0/0:11,0:11:27.09:0,27,355 0/0:12,0:12:33.10:0,33,390 0/1:12,17:29:99:430,0,329 0/1:11,12:23:99:309,0,333 0/0:14,0:14:33.10:0,33,430 0/0:18,0:18:45.14:0,45,588 0/0:5,0:5:12.04:0,12,158 0/0:5,0:5:15.05:0,15,188 0/1:3,5:8:88.06:129,0,88 0/0:11,0:11:30.09:0,30,377 0/0:6,0:6:15.05:0,15,185 0/0:7,0:7:18.06:0,18,230 0/0:9,0:9:24.07:0,24,294 0/1:21,12:34:99:266,0,597 0/0:15,0:15:42.11:0,42,518 0/1:2,6:8:37.60:193,0,38 0/0:10,0:10:27.09:0,27,344 0/0:18,0:18:51.15:0,51,609 0/0:13,0:13:33.10:0,33,423 0/0:15,0:15:42.11:0,42,483 0/0:12,0:12:27.08:0,27,328 0/0:25,0:25:69.23:0,69,924 0/0:10,0:10:27.08:0,27,344 0/0:16,0:16:45.10:0,45,525 0/0:6,0:6:15.05:0,15,210 0/0:5,0:5:15.04:0,15,163 0/0:5,0:5:12.04:0,12,152 0/0:7,0:7:15.05:0,15,198 0/0:4,0:4:12.04:0,12,146 0/0:16,0:16:48.15:0,48,587 0/0:21,0:21:60.18:0,60,737 0/0:12,0:12:33.10:0,33,417 0/1:6,2:8:53.33:53,0,135 0/1:7,5:12:99:114,0,214 0/0:7,0:7:21.05:0,21,246 0/0:10,0:10:30.08:0,30,350 0/0:7,0:7:18.04:0,18,212 0/0:12,0:12:36.10:0,36,420 0/0:11,0:11:30.07:0,30,356 0/1:7,2:9:37.95:38,0,197 0/0:11,0:11:30.10:0,30,387 11 802591 . G C 33.36 . AC=5;AF=0.060;AN=84;BaseQRankSum=-12.638;DP=1056;Dels=0.00;FS=307.947;HRun=1;HaplotypeScore=0.9192;InbreedingCoeff=-0.0998;MQ=57.89;MQ0=1;MQRankSum=0.020;QD=0.25;ReadPosRankSum=-9.649 GT:AD:DP:GQ:PL 0/0:17,6:23:21.43:0,21,483 0/0:30,3:33:69.20:0,69,837 0/0:13,6:19:36.07:0,36,427 0/0:24,11:35:28.53:0,29,654 0/0:23,12:35:50.62:0,51,600 0/0:20,6:27:2.79:0,3,515 0/0:17,2:19:39.11:0,39,475 0/0:8,1:9:21.07:0,21,280 0/0:10,3:13:27.08:0,27,339 0/0:18,11:29:13.78:0,14,508 0/0:13,4:17:33.10:0,33,404 0/1:11,7:18:28.54:29,0,341 0/0:17,7:24:41.61:0,42,490 0/0:14,4:18:2.65:0,3,360 0/0:57,28:85:73.49:0,73,1618 0/0:21,6:27:49.94:0,50,554 0/0:21,4:25:29.44:0,29,583 0/0:13,4:17:18.05:0,18,224 0/0:30,11:41:14.67:0,15,722 0/0:36,6:42:65.14:0,65,1015 0/0:29,7:36:42.50:0,43,728 0/0:14,4:18:2.41:0,2,295 0/1:26,10:36:23.47:23,0,768 0/0:13,2:15:6.40:0,6,343 0/0:12,7:19:27.08:0,27,340 0/0:19,4:23:48.14:0,48,605 0/0:16,7:23:7.72:0,8,401 0/0:19,7:26:8.65:0,9,423 0/0:12,1:13:18.58:0,19,240 0/0:13,5:18:5.83:0,6,390 0/0:18,6:24:40.35:0,40,491 0/0:33,2:36:74.02:0,74,883 0/0:14,4:18:33.08:0,33,399 0/0:14,6:20:5.81:0,6,363 0/0:10,4:14:2.70:1,0,202 0/0:11,7:18:30.06:0,30,341 0/1:20,15:36:46.26:46,0,626 0/0:13,8:21:7.36:0,7,400 0/0:18,6:24:51.15:0,51,611 0/1:19,4:23:9.89:10,0,522 0/0:17,4:21:23.43:0,23,493 0/1:9,9:18:15.29:15,0,281 11 804212 . C A 18942.32 . AC=46;AF=0.548;AN=84;BaseQRankSum=-13.126;DP=1162;Dels=0.00;FS=2.382;HRun=1;HaplotypeScore=1.4130;InbreedingCoeff=0.0389;MQ=58.01;MQ0=0;MQRankSum=-0.242;QD=22.23;ReadPosRankSum=2.168 GT:AD:DP:GQ:PL 0/1:14,5:20:99:134,0,362 1/1:0,18:18:51.15:614,51,0 0/1:9,10:19:99:269,0,232 0/0:65,0:65:99:0,172,2200 0/0:61,0:61:99:0,144,1907 1/1:0,43:43:99:1463,120,0 1/1:0,23:23:57.18:730,57,0 1/1:0,34:34:87.25:1050,87,0 0/1:9,6:15:99:131,0,291 0/1:4,3:7:83.55:84,0,118 0/1:3,5:8:92.18:119,0,92 1/1:0,24:24:66.20:807,66,0 1/1:1,24:25:66.20:784,66,0 0/1:12,12:24:99:313,0,301 0/0:53,0:53:99:0,150,1814 0/1:9,13:22:99:364,0,254 0/1:11,8:19:99:238,0,260 1/1:0,19:19:54.16:637,54,0 1/1:0,47:47:99:1482,123,0 0/1:10,10:20:99:280,0,293 1/1:0,43:43:96.29:1188,96,0 0/1:17,6:23:99:141,0,542 0/1:31,34:65:99:1006,0,796 0/1:13,5:18:99:134,0,414 1/1:0,39:39:99:1257,102,0 0/0:30,0:30:72.22:0,72,935 0/0:15,0:15:42.13:0,42,528 0/1:10,10:20:99:274,0,255 0/0:18,0:18:51.15:0,51,623 0/1:8,13:21:99:406,0,222 0/1:10,9:19:99:265,0,325 1/1:0,49:49:99:1533,123,0 0/1:19,15:34:99:356,0,544 0/1:14,8:22:99:202,0,420 0/0:12,0:12:33.10:0,33,411 1/1:0,29:29:87.27:1059,87,0 0/0:31,1:32:66.20:0,66,810 0/1:14,3:17:52.97:53,0,441 0/1:10,13:23:99:413,0,259 0/1:8,17:25:99:507,0,194 1/1:0,18:18:54.16:649,54,0 0/0:24,0:24:60.19:0,60,748 11 804221 . C G 8.86 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.496;DP=981;Dels=0.00;FS=32.123;HRun=1;HaplotypeScore=2.2251;InbreedingCoeff=-0.0136;MQ=57.96;MQ0=0;MQRankSum=1.819;QD=0.55;ReadPosRankSum=-4.508 GT:AD:DP:GQ:PL 0/0:16,1:17:36.10:0,36,432 0/0:14,1:15:33.10:0,33,402 0/0:13,5:18:24.08:0,24,307 0/0:34,12:47:45.54:0,46,835 0/0:37,11:48:87.26:0,87,1100 0/0:32,4:36:24.44:0,24,523 0/0:26,3:29:57.15:0,57,683 0/0:28,2:30:48.12:0,48,578 0/0:10,1:12:18.06:0,18,231 0/0:8,0:8:21.06:0,21,250 0/0:5,3:8:12.03:0,12,137 0/0:17,0:17:36.08:0,36,425 0/0:18,1:19:42.10:0,42,501 0/0:16,4:20:33.10:0,33,399 0/0:40,7:47:93.24:0,93,1091 0/0:19,3:22:19.48:0,19,506 0/0:14,0:14:33.11:0,33,419 0/0:14,2:16:30.09:0,30,367 0/0:34,3:38:63.19:0,63,764 0/0:18,2:20:54.14:0,54,644 0/0:28,8:36:62.55:0,63,747 0/0:20,0:22:48.14:0,48,570 0/0:42,9:51:90.25:0,90,1109 0/0:20,2:23:33.08:0,33,383 0/0:31,2:36:51.12:0,51,601 0/0:24,1:26:39.10:0,39,473 0/0:13,0:13:21.07:0,21,268 0/0:12,1:13:30.10:0,30,382 0/1:13,3:16:54.45:54,0,325 0/0:12,1:13:18.06:0,18,228 0/0:14,2:16:39.08:0,39,455 0/0:35,1:36:72.18:0,72,844 0/0:25,5:31:48.15:0,48,582 0/0:16,0:16:42.11:0,42,489 0/0:12,0:12:36.10:0,36,415 0/0:25,2:27:66.18:0,66,787 0/0:19,3:22:48.12:0,48,574 0/0:13,0:13:36.10:0,36,429 0/0:17,3:20:42.13:0,42,511 0/0:14,3:17:33.09:0,33,383 0/0:15,1:16:36.08:0,36,417 0/0:19,2:21:39.11:0,39,456 11 822588 . C T 4622.46 . AC=3;AF=0.036;AN=84;BaseQRankSum=-5.823;DP=3618;DS;Dels=0.00;FS=5.651;HRun=2;HaplotypeScore=2.0947;InbreedingCoeff=-0.0370;MQ=58.23;MQ0=0;MQRankSum=0.371;QD=12.73;ReadPosRankSum=1.499 GT:AD:DP:GQ:PL 0/0:77,0:77:99:0,223,2687 0/0:70,0:70:99:0,184,2328 0/0:67,0:67:99:0,178,2199 0/0:140,0:140:99:0,382,4902 0/1:62,48:110:99:1391,0,1987 0/0:91,0:91:99:0,259,3369 0/0:77,0:77:99:0,217,2816 0/0:108,0:108:99:0,304,3945 0/0:83,0:83:99:0,235,2895 0/0:80,0:80:99:0,199,2442 0/0:60,0:60:99:0,169,2053 0/0:66,0:66:99:0,184,2249 0/0:68,0:68:99:0,168,2099 0/0:81,0:81:99:0,226,2754 0/1:114,91:205:99:2536,0,3145 0/1:24,24:48:99:696,0,639 0/0:61,0:61:99:0,169,2092 0/0:80,0:80:99:0,214,2643 0/0:133,1:134:99:0,334,4045 0/0:136,0:136:99:0,358,4461 0/0:123,0:123:99:0,301,3684 0/0:80,0:80:99:0,229,2795 0/0:136,0:136:99:0,373,4838 0/0:59,0:59:99:0,159,2087 0/0:82,0:82:99:0,217,2796 0/0:67,0:67:99:0,181,2339 0/0:44,0:44:99:0,111,1400 0/0:71,1:72:99:0,199,2466 0/0:66,0:66:99:0,181,2207 0/0:75,0:75:99:0,211,2603 0/0:73,0:73:99:0,193,2421 0/0:110,0:111:99:0,307,3779 0/0:82,0:82:99:0,226,2779 0/0:70,0:70:99:0,199,2424 0/0:83,0:83:99:0,229,2849 0/0:74,0:74:99:0,208,2528 0/0:115,1:116:99:0,316,3856 0/0:64,0:64:99:0,172,2131 0/0:67,0:67:99:0,175,2162 0/0:68,0:68:99:0,193,2359 0/0:84,0:84:99:0,238,2920 0/0:79,1:80:99:0,194,2701 11 830670 . G T 1628.39 . AC=49;AF=0.700;AN=70;BaseQRankSum=-4.707;DP=92;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1860;InbreedingCoeff=-0.0318;MQ=56.80;MQ0=0;MQRankSum=1.612;QD=20.88;ReadPosRankSum=1.235 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:35,3,0 1/1:0,1:1:3.01:36,3,0 0/1:2,1:3:29.23:29,0,33 0/1:2,1:3:30.11:30,0,39 0/1:1,1:2:25.53:26,0,31 ./. ./. ./. 0/1:0,1:1:1.76:31,3,0 1/1:0,5:5:12.03:134,12,0 1/1:0,3:3:9.03:102,9,0 1/1:0,1:1:3.01:34,3,0 ./. 0/0:4,0:4:6.02:0,6,83 1/1:0,7:7:18.05:204,18,0 0/1:1,1:2:27.42:27,0,32 0/1:3,1:4:21.40:21,0,105 1/1:0,2:2:6.02:73,6,0 1/1:0,1:1:3.01:36,3,0 1/1:0,2:2:6.02:76,6,0 1/1:0,3:3:9.02:95,9,0 0/1:1,2:3:28.77:58,0,29 ./. 1/1:0,1:1:3.01:34,3,0 ./. 1/1:0,1:1:3.01:37,3,0 0/0:1,0:1:3.01:0,3,33 0/0:6,0:6:15.04:0,15,176 0/0:3,0:3:9.03:0,9,113 ./. 1/1:0,1:1:3.01:36,3,0 1/1:0,3:3:9.03:107,9,0 1/1:0,1:1:3.01:34,3,0 0/1:1,2:3:30.29:61,0,30 1/1:0,4:4:12.03:131,12,0 0/1:4,2:6:52.43:52,0,120 0/1:4,2:6:38.20:38,0,124 1/1:0,1:1:3.01:34,3,0 0/1:1,1:2:25.53:26,0,33 1/1:0,2:3:6.02:70,6,0 0/1:0,1:1:1.76:33,3,0 0/1:0,1:1:1.76:34,3,0 11 836406 . C T 185.79 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.933;DP=856;Dels=0.00;FS=1.629;HRun=0;HaplotypeScore=0.9740;InbreedingCoeff=-0.0122;MQ=58.77;MQ0=0;MQRankSum=-0.071;QD=10.93;ReadPosRankSum=-0.490 GT:AD:DP:GQ:PL 0/0:15,0:15:42.10:0,42,456 0/0:11,0:11:30.08:0,30,343 0/1:9,8:17:99:232,0,193 0/0:49,0:50:99:0,129,1538 0/0:39,0:39:99:0,105,1255 0/0:26,0:26:72.21:0,72,850 0/0:24,0:24:69.19:0,69,808 0/0:21,0:21:57.15:0,57,646 0/0:14,0:14:39.11:0,39,449 0/0:9,0:9:27.08:0,27,310 0/0:12,0:12:33.02:0,33,337 0/0:17,0:17:48.13:0,48,549 0/0:9,0:9:27.05:0,27,290 0/0:16,0:16:45.11:0,45,496 0/0:42,0:42:99:0,114,1263 0/0:20,0:20:57.15:0,57,624 0/0:14,0:14:39.07:0,39,402 0/0:18,0:18:54.13:0,54,595 0/0:26,0:26:72.16:0,72,789 0/0:30,0:30:84.20:0,84,938 0/0:25,0:25:72.19:0,72,812 0/0:26,0:27:72.19:0,72,815 0/0:34,0:34:93.26:0,93,1150 0/0:24,0:25:54.14:0,54,640 0/0:21,0:21:60.18:0,60,725 0/0:18,0:19:51.14:0,51,608 0/0:20,0:20:54.15:0,54,617 0/0:13,0:13:36.10:0,36,421 0/0:14,0:14:36.09:0,36,409 0/0:19,0:19:54.13:0,54,602 0/0:17,0:17:48.11:0,48,517 0/0:39,0:39:99:0,102,1146 0/0:11,0:11:33.06:0,33,354 0/0:8,0:8:24.06:0,24,269 0/0:16,0:16:45.10:0,45,496 0/0:12,0:12:33.07:0,33,366 0/0:32,0:32:81.22:0,81,929 0/0:18,0:18:45.12:0,45,519 0/0:16,0:16:45.08:0,45,484 0/0:16,0:17:45.11:0,45,484 0/0:10,0:10:30.08:0,30,330 0/0:13,0:13:36.10:0,36,420 11 840477 . A G 69094.08 . AC=61;AF=0.726;AN=84;BaseQRankSum=19.776;DP=2813;Dels=0.00;FS=6.356;HRun=0;HaplotypeScore=1.4567;InbreedingCoeff=0.1019;MQ=59.12;MQ0=0;MQRankSum=0.773;QD=26.27;ReadPosRankSum=-0.646 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1474,123,0 1/1:0,40:40:99:1410,117,0 0/1:24,24:48:99:688,0,609 0/1:80,67:147:99:2025,0,2239 1/1:2,123:125:99:4588,298,0 1/1:1,103:104:99:3699,286,0 0/1:48,42:90:99:1286,0,1443 1/1:0,93:93:99:3448,268,0 1/1:0,44:44:99:1424,120,0 1/1:0,39:39:99:1386,117,0 1/1:0,32:32:93.28:1138,93,0 0/1:27,26:53:99:756,0,737 1/1:0,42:42:99:1423,120,0 0/0:45,0:45:99:0,126,1456 1/1:0,113:113:99:3664,313,0 0/1:26,28:54:99:844,0,604 0/1:25,33:59:99:974,0,675 1/1:0,46:46:99:1636,135,0 1/1:0,74:76:99:2547,217,0 1/1:0,120:121:99:3990,334,0 1/1:0,89:90:99:3080,262,0 0/1:41,27:69:99:723,0,1198 0/1:73,77:151:99:2469,0,2008 0/1:35,40:75:99:1315,0,995 1/1:0,92:94:99:3510,268,0 0/1:34,43:78:99:1399,0,839 0/0:42,0:42:99:0,117,1369 0/0:58,0:58:99:0,168,1986 0/0:38,0:38:99:0,102,1200 1/1:0,47:47:99:1684,138,0 1/1:0,50:50:99:1716,144,0 1/1:0,82:84:99:2676,223,0 1/1:0,63:63:99:2232,187,0 0/1:29,22:51:99:610,0,745 0/1:30,21:51:99:606,0,877 0/1:27,26:53:99:726,0,760 0/1:42,26:68:99:731,0,1187 1/1:0,45:45:99:1555,129,0 0/1:27,28:55:99:799,0,797 1/1:0,55:56:99:1943,165,0 1/1:0,41:41:99:1437,120,0 1/1:0,42:42:99:1482,123,0 11 850314 . G C 146.45 . AC=14;AF=0.167;AN=84;BaseQRankSum=-4.990;DP=542;Dels=0.00;FS=430.142;HRun=2;HaplotypeScore=0.4703;InbreedingCoeff=-0.2251;MQ=58.37;MQ0=0;MQRankSum=0.342;QD=1.05;ReadPosRankSum=-9.801 GT:AD:DP:GQ:PL 0/0:7,2:9:21.01:0,21,212 0/1:4,2:6:23.22:23,0,84 0/1:2,2:4:27.95:30,0,28 0/0:24,11:35:72.19:0,72,829 0/0:23,4:27:56.53:0,57,649 0/0:10,5:15:27.05:0,27,297 0/0:18,5:23:44.70:0,45,479 0/0:14,6:20:38.33:0,38,442 0/0:7,5:12:21.02:0,21,209 0/1:10,6:16:37.74:38,0,224 0/0:4,3:7:9.01:0,9,91 0/1:7,2:9:12.07:12,0,200 0/0:8,2:10:10.24:0,10,141 0/1:5,3:8:16.52:17,0,110 0/0:20,4:24:54.67:0,55,602 0/1:7,6:13:29.23:29,0,190 0/0:5,2:7:15.04:0,15,159 0/0:6,2:8:16.28:0,16,162 0/0:10,4:14:2.52:1,0,255 0/0:15,3:18:40.34:0,40,417 0/0:10,1:11:24.06:0,24,258 0/0:7,3:10:18.02:0,18,192 0/0:30,12:42:75.66:0,76,866 0/1:6,4:10:14.45:14,0,159 0/0:17,8:25:9.75:0,10,507 0/1:10,5:15:23.14:23,0,313 0/1:6,3:9:12.12:12,0,107 0/1:6,5:11:41.88:42,0,163 0/0:6,3:9:11.49:0,11,120 0/0:9,5:14:26.26:0,26,256 0/0:7,3:10:16.93:0,17,193 0/1:12,6:18:3.36:3,0,263 0/0:6,3:9:18.04:0,18,190 0/0:3,2:5:9.02:0,9,96 0/0:4,4:8:5.83:0,6,91 0/0:4,0:4:6.01:0,6,62 0/0:9,4:13:0.92:0,1,237 0/1:5,2:7:21.94:22,0,115 0/1:4,1:5:8.66:9,0,109 0/0:5,2:7:15.02:0,15,156 0/0:5,2:7:11.40:0,11,103 0/1:6,2:8:14.20:14,0,175 11 862652 . T C 54005.03 . AC=84;AF=1.000;AN=84;DP=1543;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.2686;InbreedingCoeff=-0.0000;MQ=59.16;MQ0=0;QD=35.00 GT:AD:DP:GQ:PL 1/1:0,28:28:81.25:1011,81,0 1/1:0,27:28:72.23:914,72,0 1/1:0,28:28:78.24:969,78,0 1/1:0,88:88:99:3198,244,0 1/1:0,53:53:99:2043,153,0 1/1:0,44:44:99:1638,123,0 1/1:0,45:45:99:1670,129,0 1/1:0,46:46:99:1637,123,0 1/1:0,35:35:99:1223,99,0 1/1:0,22:22:60.18:749,60,0 1/1:0,26:26:72.22:904,72,0 1/1:0,22:22:60.19:750,60,0 1/1:0,33:33:84.24:1055,84,0 1/1:0,27:27:78.24:976,78,0 1/1:0,100:101:99:3153,253,0 1/1:0,32:33:93.29:1163,93,0 1/1:0,25:25:69.17:832,69,0 1/1:0,26:26:72.22:901,72,0 1/1:0,41:41:99:1340,108,0 1/1:0,60:60:99:2080,166,0 1/1:0,45:45:99:1546,123,0 1/1:0,35:35:99:1225,99,0 1/1:0,74:74:99:2896,220,0 1/1:0,37:37:99:1329,99,0 1/1:0,37:37:99:1313,99,0 1/1:0,44:44:99:1505,114,0 1/1:0,20:20:57.15:700,57,0 1/1:0,27:27:75.17:893,75,0 1/1:0,27:27:75.23:943,75,0 1/1:0,23:23:54.17:699,54,0 1/1:0,30:30:87.26:1096,87,0 1/1:0,41:41:99:1270,99,0 1/1:0,32:32:93.28:1157,93,0 1/1:0,17:17:51.16:636,51,0 1/1:0,24:24:72.22:890,72,0 1/1:0,32:32:93.28:1126,93,0 1/1:0,41:41:99:1270,102,0 1/1:0,30:30:90.27:1109,90,0 1/1:0,31:31:87.27:1099,87,0 1/1:0,25:25:72.22:887,72,0 1/1:0,22:22:63.20:804,63,0 1/1:0,38:38:99:1405,111,0 11 862715 . AAGG A 257.90 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.498;DP=1263;FS=0.000;HRun=0;HaplotypeScore=113.6898;InbreedingCoeff=-0.0120;MQ=58.59;MQ0=0;MQRankSum=-1.359;QD=16.12;ReadPosRankSum=1.061 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,102,2336 0/0:24,0:24:63.21:0,63,1400 0/0:20,0:20:60.21:0,60,1379 0/0:57,0:57:99:0,166,3771 0/0:53,0:53:99:0,154,3456 0/0:27,0:27:75.26:0,75,1696 0/0:37,0:36:99:0,108,2474 0/0:37,0:34:99:0,105,2387 0/0:25,0:25:75.21:0,75,1623 0/0:18,0:18:51.17:0,51,1128 0/0:25,0:25:72.25:0,72,1629 0/0:21,0:21:60.21:0,60,1385 0/0:23,0:23:66.23:0,66,1522 0/0:30,0:30:90.31:0,90,2068 0/0:85,0:85:99:0,238,5336 0/0:31,0:31:87.29:0,87,1911 0/0:20,0:20:60.20:0,60,1320 0/0:26,0:26:72.25:0,72,1650 0/0:44,0:44:99:0,123,2720 0/0:37,0:37:99:0,111,2459 0/0:36,0:36:99:0,108,2426 0/0:24,0:24:66.22:0,66,1486 0/0:49,0:48:99:0,141,3189 0/0:31,0:31:90.31:0,90,2057 0/0:25,0:23:72.24:0,72,1608 0/0:25,0:24:72.25:0,72,1649 0/0:19,0:19:54.19:0,54,1243 0/1:9,7:16:99:313,0,503 0/0:22,0:22:63.22:0,63,1438 0/0:26,0:26:75.26:0,75,1722 0/0:14,0:14:42.14:0,42,969 0/0:40,0:40:99:0,114,2572 0/0:26,0:26:75.25:0,75,1607 0/0:20,0:20:60.21:0,60,1376 0/0:26,0:26:72.23:0,72,1571 0/0:22,0:22:63.22:0,63,1454 0/0:42,0:42:99:0,126,2787 0/0:29,0:29:84.28:0,84,1894 0/0:25,0:24:72.25:0,72,1641 0/0:25,0:25:75.25:0,75,1677 0/0:18,0:18:54.19:0,54,1237 0/0:28,0:28:81.26:0,81,1774 11 866612 . A G 378.90 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.887;DP=1496;Dels=0.00;FS=3.240;HRun=1;HaplotypeScore=1.1544;InbreedingCoeff=-0.0120;MQ=58.79;MQ0=0;MQRankSum=1.578;QD=7.02;ReadPosRankSum=-0.060 GT:AD:DP:GQ:PL 0/0:32,0:32:90.27:0,90,1111 0/0:24,0:25:54.17:0,54,684 0/0:20,0:20:57.17:0,57,703 0/0:90,0:90:99:0,217,2770 0/1:34,20:54:99:425,0,987 0/0:38,0:38:99:0,99,1247 0/0:32,0:32:81.26:0,81,1055 0/0:51,0:51:99:0,126,1618 0/0:19,0:19:54.17:0,54,663 0/0:25,0:25:69.16:0,69,803 0/0:27,0:27:72.22:0,72,896 0/0:33,0:33:81.25:0,81,1028 0/0:22,0:22:54.16:0,54,666 0/0:29,0:29:81.25:0,81,1001 0/0:98,0:98:99:0,253,3150 0/0:31,0:31:90.28:0,90,1119 0/0:27,0:27:69.21:0,69,869 0/0:24,0:24:69.19:0,69,837 0/0:43,0:43:99:0,105,1330 0/0:43,0:43:99:0,111,1368 0/0:48,1:49:99:0,110,1639 0/0:39,0:39:99:0,99,1241 0/0:71,0:71:99:0,175,2241 0/0:35,0:35:87.26:0,87,1065 0/0:46,0:46:99:0,114,1474 0/0:25,0:25:60.19:0,60,776 0/0:19,0:19:54.17:0,54,669 0/0:26,0:26:72.20:0,72,880 0/0:22,1:23:63.20:0,63,779 0/0:23,0:23:63.19:0,63,774 0/0:36,0:36:93.28:0,93,1160 0/0:45,0:45:99:0,117,1481 0/0:30,0:30:78.23:0,78,951 0/0:32,0:32:87.27:0,87,1074 0/0:27,0:27:78.23:0,78,941 0/0:29,1:31:72.22:0,72,912 0/0:38,0:38:99:0,99,1244 0/0:27,0:27:69.20:0,69,837 0/0:35,0:35:93.27:0,93,1125 0/0:25,0:25:72.22:0,72,893 0/0:22,0:22:54.17:0,54,682 0/0:29,0:29:66.20:0,66,840 11 972143 . G GC 28.26 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.602;DP=1406;FS=305.517;HRun=2;HaplotypeScore=127.7176;InbreedingCoeff=-0.0596;MQ=56.68;MQ0=6;MQRankSum=1.509;QD=0.17;ReadPosRankSum=-12.492 GT:AD:DP:GQ:PL 0/0:27,0:27:1.90:3,0,507 0/0:38,0:38:51.12:0,51,850 0/0:23,0:23:0.37:11,0,412 0/0:31,0:31:3.04:0,3,457 0/0:26,0:26:42.66:0,43,514 0/0:16,0:15:36.11:0,36,446 0/0:23,0:22:45.05:0,45,502 0/0:23,0:23:42.11:0,42,499 0/0:26,0:26:19.12:0,19,492 0/0:27,0:26:33.19:0,33,601 0/0:24,0:24:41.09:0,41,453 0/0:23,13:36:17.21:0,17,437 0/0:14,0:14:29.29:0,29,342 0/0:29,0:29:48.15:0,48,595 0/1:109,0:109:15.81:16,0,2089 0/0:45,0:45:59.86:0,60,1027 0/0:23,0:23:19.51:0,20,426 0/0:24,0:24:40.67:0,41,487 0/0:51,0:51:6.54:0,7,932 0/0:69,0:68:99:0,131,1614 0/0:51,0:50:3.31:0,3,999 0/0:42,0:42:57.88:0,58,699 0/0:33,11:44:36.51:0,37,615 0/0:20,0:20:30.06:0,30,347 0/0:18,0:18:5.05:0,5,322 0/0:26,0:26:33.10:0,33,409 0/0:27,0:27:20.16:0,20,462 0/0:22,0:22:26.93:0,27,306 0/0:15,0:15:23.43:0,23,269 0/0:30,0:29:62.41:0,62,751 0/0:27,0:27:57.07:0,57,654 0/0:63,0:62:72.72:0,73,1382 0/0:50,0:49:13.29:0,13,765 0/0:29,0:29:38.16:0,38,522 0/0:36,0:36:60.12:0,60,716 0/0:37,0:36:25.56:0,26,590 0/1:59,0:58:78.52:79,0,925 0/0:26,0:26:47.50:0,48,554 0/0:23,0:23:32.10:0,32,444 0/0:18,0:18:25.06:0,25,364 0/0:30,0:30:56.78:0,57,649 0/0:29,0:29:59.74:0,60,682 11 988619 . A G 2318.33 . AC=2;AF=0.024;AN=84;BaseQRankSum=7.864;DP=4425;DS;Dels=0.00;FS=11.174;HRun=0;HaplotypeScore=3.0734;InbreedingCoeff=-0.0244;MQ=59.00;MQ0=0;MQRankSum=-0.430;QD=17.05;ReadPosRankSum=0.499 GT:AD:DP:GQ:PL 0/0:92,0:92:99:0,256,3008 0/0:66,0:66:99:0,184,2205 0/0:75,0:75:99:0,202,2394 0/0:183,0:184:99:0,532,6210 0/0:170,0:170:99:0,484,5759 0/0:171,0:171:99:0,475,5825 0/0:120,0:120:99:0,346,4038 0/0:140,0:140:99:0,397,4723 0/1:35,41:76:99:1271,0,944 0/1:25,35:60:99:1110,0,671 0/0:86,0:86:99:0,241,2881 0/0:72,0:73:99:0,205,2380 0/0:76,0:76:99:0,208,2455 0/0:98,0:101:99:0,277,3315 0/0:229,0:229:99:0,641,7541 0/0:87,0:87:99:0,247,2926 0/0:90,0:90:99:0,259,3020 0/0:78,0:78:99:0,223,2641 0/0:138,0:138:99:0,385,4557 0/0:155,0:155:99:0,418,5099 0/0:154,0:154:99:0,418,5052 0/0:127,0:127:99:0,355,4179 0/0:195,0:196:99:0,562,6457 0/0:102,0:102:99:0,286,3404 0/0:138,0:139:99:0,394,4650 0/0:112,0:112:99:0,304,3665 0/0:68,0:68:99:0,199,2339 0/0:71,1:72:99:0,208,2446 0/0:49,1:50:99:0,138,1645 0/0:65,0:66:99:0,181,2142 0/0:75,0:75:99:0,211,2444 0/0:143,0:143:99:0,388,4609 0/0:118,0:118:99:0,340,4001 0/0:75,0:75:99:0,220,2604 0/0:87,0:88:99:0,253,2969 0/0:69,0:70:99:0,208,2425 0/0:155,0:157:99:0,439,5141 0/0:90,0:90:99:0,250,2957 0/0:75,0:75:99:0,217,2490 0/0:59,0:60:99:0,175,2081 0/0:60,0:60:99:0,171,2013 0/0:61,0:61:99:0,168,2042 11 1009101 . T G 60.13 . AC=8;AF=0.095;AN=84;BaseQRankSum=-11.053;DP=659;Dels=0.00;FS=27.424;HRun=2;HaplotypeScore=0.5948;InbreedingCoeff=-0.1438;MQ=57.76;MQ0=0;MQRankSum=-0.749;QD=0.34;ReadPosRankSum=-0.130 GT:AD:DP:GQ:PL 0/0:6,3:9:18.05:0,18,213 0/0:6,4:10:18.05:0,18,194 0/0:9,9:18:27.02:0,27,280 0/1:12,19:31:28.59:29,0,305 0/1:9,5:14:31.96:32,0,214 0/0:15,8:23:19.39:0,19,403 0/0:7,3:10:21.05:0,21,229 0/1:7,12:19:31.27:31,0,138 0/0:4,4:8:12.03:0,12,128 0/0:6,4:10:18.05:0,18,207 0/1:4,6:10:15.55:16,0,116 0/0:9,6:15:1.31:5,0,225 0/0:4,7:11:12.03:0,12,128 0/0:6,2:8:12.02:0,12,117 0/1:21,19:40:8.96:9,0,471 0/0:8,5:13:18.05:0,18,211 0/0:6,5:11:18.05:0,18,206 0/0:7,6:13:18.01:0,18,184 0/1:11,15:27:25:25,0,307 0/0:18,7:25:54.12:0,54,593 0/0:14,6:20:39.11:0,39,443 0/0:13,8:21:18.37:0,18,376 0/0:12,16:28:30.05:0,30,306 0/0:9,6:15:27.06:0,27,295 0/0:14,11:25:39.08:0,39,416 0/0:6,10:16:15.04:0,15,173 0/0:4,3:7:12.02:0,12,123 0/0:2,3:5:3.01:0,3,33 0/0:8,7:15:1.35:0,1,223 0/0:6,8:14:18.05:0,18,199 0/0:7,5:12:18.04:0,18,194 0/1:16,9:25:9.83:10,0,412 0/0:7,8:15:0.87:7,0,204 0/0:8,8:16:24.06:0,24,267 0/0:7,4:11:21.06:0,21,235 0/0:7,4:11:18.05:0,18,207 0/0:6,8:14:17.27:0,17,186 0/1:5,7:12:18.56:19,0,88 0/0:9,3:12:27.06:0,27,291 0/0:7,8:15:21.05:0,21,235 0/0:7,5:12:18.05:0,18,206 0/0:10,2:13:24.07:0,24,275 11 1026048 . G A 2245.91 . AC=17;AF=0.202;AN=84;BaseQRankSum=0.900;DP=382;Dels=0.00;FS=2.137;HRun=0;HaplotypeScore=0.3726;InbreedingCoeff=0.0065;MQ=58.53;MQ0=0;MQRankSum=-0.145;QD=15.49;ReadPosRankSum=0.680 GT:AD:DP:GQ:PL 0/0:11,0:11:30.08:0,30,340 0/1:3,4:8:81.82:115,0,82 0/1:1,1:2:27.42:27,0,32 0/0:17,0:17:42.12:0,42,521 0/0:15,0:15:39.12:0,39,496 0/0:7,0:7:18.05:0,18,220 0/0:7,0:7:21.06:0,21,251 0/0:6,0:6:18.05:0,18,217 0/1:2,7:9:34.11:222,0,34 0/1:5,2:7:51.17:51,0,152 0/1:6,3:9:76.86:77,0,180 0/0:11,0:11:30.09:0,30,351 0/0:3,0:3:3.01:0,3,37 0/0:12,0:12:30.09:0,30,367 1/1:0,20:20:57.16:659,57,0 0/1:4,4:8:84.67:85,0,119 0/1:5,3:8:60.16:60,0,112 0/1:4,1:5:21.94:22,0,121 0/1:9,4:13:99:110,0,205 0/1:9,16:25:99:337,0,207 0/0:15,0:15:36.09:0,36,406 0/0:14,0:14:42.12:0,42,487 0/0:11,0:11:33.04:0,33,369 0/1:1,5:6:21.93:139,0,22 0/1:2,3:5:51.76:95,0,52 0/0:3,0:3:9.03:0,9,108 0/0:5,0:5:12.04:0,12,142 0/0:4,0:4:12.03:0,12,140 0/0:3,0:3:9.02:0,9,101 0/1:7,8:15:99:242,0,130 1/1:0,5:5:15.04:179,15,0 0/0:16,0:16:39.10:0,39,451 0/0:12,0:12:33.09:0,33,372 0/0:5,0:5:9.02:0,9,101 0/0:5,0:5:15.02:0,15,165 0/0:13,0:13:30.09:0,30,376 0/0:11,0:11:30.07:0,30,335 0/0:9,0:9:27.08:0,27,311 0/0:5,0:5:15.04:0,15,179 0/0:9,0:9:21.06:0,21,251 0/0:3,0:3:9.03:0,9,106 0/0:5,0:5:15.02:0,15,158 11 1026084 . G A 760.21 . AC=10;AF=0.119;AN=84;BaseQRankSum=-6.453;DP=341;Dels=0.00;FS=1.489;HRun=0;HaplotypeScore=0.3907;InbreedingCoeff=-0.1506;MQ=58.02;MQ0=0;MQRankSum=-1.040;QD=9.05;ReadPosRankSum=-0.262 GT:AD:DP:GQ:PL 0/1:5,5:10:99:125,0,113 0/0:8,0:8:18.05:0,18,225 0/0:2,0:2:6.02:0,6,75 0/0:19,0:19:48.15:0,48,624 0/1:5,5:10:99:144,0,170 0/1:4,3:7:92.03:92,0,95 0/1:4,3:7:85.55:86,0,144 0/1:6,4:10:75.79:76,0,185 0/0:11,0:11:30.09:0,30,376 0/0:11,0:11:33.10:0,33,402 0/0:5,0:5:15.05:0,15,182 0/0:5,0:5:15.05:0,15,187 0/1:5,1:6:13.61:14,0,135 0/0:6,0:6:15.04:0,15,180 0/0:16,0:16:42.13:0,42,526 0/0:8,0:8:21.07:0,21,274 0/0:6,0:6:15.05:0,15,192 0/0:7,0:7:18.03:0,18,212 0/0:11,0:11:33.10:0,33,415 0/0:14,0:14:42.13:0,42,531 0/1:8,6:14:99:132,0,210 0/1:6,2:8:45.53:46,0,199 0/0:14,0:14:42.14:0,42,571 0/0:5,0:5:12.04:0,12,165 0/0:12,0:12:33.11:0,33,446 0/1:2,1:3:28.33:28,0,35 0/0:5,0:5:12.04:0,12,143 0/0:4,0:4:12.04:0,12,152 0/0:4,0:4:12.04:0,12,149 0/0:11,0:11:33.10:0,33,410 0/0:5,0:5:12.04:0,12,156 0/0:15,0:15:39.11:0,39,492 0/0:6,0:6:15.05:0,15,184 0/0:7,0:7:21.07:0,21,264 0/0:6,0:6:18.05:0,18,215 0/0:11,0:11:30.09:0,30,383 0/1:4,5:9:99:151,0,121 0/0:4,0:4:9.02:0,9,108 0/0:5,0:5:15.05:0,15,182 0/0:6,0:6:18.06:0,18,229 0/0:5,0:5:12.04:0,12,160 0/0:3,0:3:9.03:0,9,109 11 1029105 . TGTC T 462.59 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.613;DP=903;FS=2.592;HRun=0;HaplotypeScore=79.2414;InbreedingCoeff=-0.0129;MQ=58.54;MQ0=0;MQRankSum=-0.378;QD=14.02;ReadPosRankSum=1.785 GT:AD:DP:GQ:PL 0/0:11,0:11:33.11:0,33,763 0/0:5,0:5:12.04:0,12,277 0/0:14,0:14:30.10:0,30,691 0/0:36,0:36:96.31:0,96,2121 0/1:21,12:33:99:518,0,1281 0/0:20,0:20:57.20:0,57,1315 0/0:27,0:27:75.25:0,75,1692 0/0:26,0:26:66.22:0,66,1485 0/0:12,0:12:36.12:0,36,823 0/0:17,0:17:51.17:0,51,1099 0/0:13,0:13:36.12:0,36,793 0/0:26,0:26:69.23:0,69,1550 0/0:14,0:14:42.14:0,42,921 0/0:27,0:27:81.26:0,81,1770 0/0:68,0:68:99:0,190,4259 0/0:25,0:25:69.24:0,69,1594 0/0:13,0:13:33.10:0,33,716 0/0:15,0:15:45.15:0,45,943 0/0:36,0:36:84.28:0,84,1848 0/0:23,0:23:69.17:0,69,1417 0/0:32,0:32:87.30:0,87,1956 0/0:26,0:26:72.25:0,72,1660 0/0:42,0:42:99:0,123,2792 0/0:17,0:17:48.16:0,48,1109 0/0:23,0:23:66.23:0,66,1494 0/0:16,0:15:48.08:0,48,875 0/0:14,0:14:39.13:0,39,900 0/0:17,0:17:45.15:0,45,996 0/0:11,0:11:27.09:0,27,611 0/0:13,0:13:36.10:0,36,699 0/0:20,0:20:60.21:0,60,1384 0/0:29,0:29:87.29:0,87,1961 0/0:23,0:23:66.23:0,66,1489 0/0:16,0:16:45.15:0,45,1041 0/0:19,0:19:57.20:0,57,1315 0/0:19,0:19:54.18:0,54,1210 0/0:20,0:20:60.20:0,60,1317 0/0:19,0:19:54.12:0,54,1067 0/0:25,0:25:72.24:0,72,1572 0/0:13,0:13:39.13:0,39,876 0/0:9,0:9:24.08:0,24,496 0/0:19,0:19:57.19:0,57,1278 11 1029113 . A C 3.61 . AC=1;AF=0.012;AN=84;BaseQRankSum=-8.403;DP=907;Dels=0.00;FS=10.567;HRun=1;HaplotypeScore=1.2335;InbreedingCoeff=-0.0184;MQ=58.52;MQ0=0;MQRankSum=-0.847;QD=0.11;ReadPosRankSum=-1.544 GT:AD:DP:GQ:PL 0/0:7,1:8:2.38:0,2,221 0/0:5,0:5:15.04:0,15,176 0/0:12,0:12:27.08:0,27,315 0/0:31,0:31:81.20:0,81,922 0/0:31,1:33:81.22:0,81,967 0/0:24,0:25:60.14:0,60,693 0/0:26,1:27:66.19:0,66,786 0/0:25,2:27:60.17:0,60,700 0/0:11,0:11:33.08:0,33,374 0/0:16,1:17:42.12:0,42,497 0/0:13,1:14:33.09:0,33,384 0/0:24,0:26:69.18:0,69,770 0/0:11,1:12:30.09:0,30,347 0/0:29,1:30:75.19:0,75,856 0/0:65,4:69:99:0,156,1767 0/0:25,1:26:69.16:0,69,779 0/0:11,1:12:11.41:0,11,361 0/0:13,1:14:39.12:0,39,465 0/1:24,9:33:47.25:47,0,615 0/0:23,1:24:60.16:0,60,700 0/0:25,4:29:75.20:0,75,858 0/0:23,0:23:54.14:0,54,618 0/0:40,4:44:72.76:0,73,1144 0/0:17,2:20:42.12:0,42,504 0/0:26,1:27:51.12:0,51,607 0/0:13,0:14:33.08:0,33,370 0/0:14,0:14:36.09:0,36,413 0/0:18,0:18:48.14:0,48,571 0/0:11,0:11:33.09:0,33,372 0/0:5,0:5:15.04:0,15,162 0/0:24,1:25:63.19:0,63,767 0/0:29,0:30:81.23:0,81,964 0/0:23,0:23:57.17:0,57,689 0/0:14,2:16:33.10:0,33,391 0/0:20,0:20:51.16:0,51,613 0/0:20,1:21:51.14:0,51,579 0/0:22,4:26:30.48:0,30,615 0/0:17,1:18:45.08:0,45,487 0/0:20,5:25:54.14:0,54,618 0/0:15,1:16:36.09:0,36,392 0/0:9,1:10:18.05:0,18,216 0/0:16,0:16:45.10:0,45,500 11 1029135 . C T 674.65 . AC=4;AF=0.048;AN=84;BaseQRankSum=2.269;DP=758;Dels=0.00;FS=0.790;HRun=1;HaplotypeScore=0.5482;InbreedingCoeff=-0.0515;MQ=58.50;MQ0=0;MQRankSum=0.797;QD=10.07;ReadPosRankSum=-0.912 GT:AD:DP:GQ:PL 0/0:7,0:7:15.04:0,15,181 0/0:11,0:11:27.08:0,27,328 0/0:11,0:11:30.08:0,30,328 0/0:34,0:34:93.28:0,93,1145 0/0:31,0:31:90.26:0,90,1072 0/0:20,0:20:57.16:0,57,680 0/0:23,0:23:60.19:0,60,763 0/0:23,0:23:66.19:0,66,781 0/0:10,0:10:24.06:0,24,272 0/0:17,0:17:45.12:0,45,513 0/0:14,0:14:39.11:0,39,455 0/1:7,9:16:99:252,0,189 0/0:6,0:6:18.05:0,18,205 0/1:11,7:18:99:166,0,314 0/0:69,0:69:99:0,174,1929 0/0:19,0:19:51.14:0,51,570 0/0:9,0:9:24.06:0,24,269 0/0:15,0:15:39.07:0,39,440 0/0:26,0:26:66.19:0,66,787 0/0:22,0:22:48.13:0,48,567 0/0:22,0:22:60.17:0,60,688 0/0:17,0:17:48.13:0,48,535 0/0:34,0:34:93.26:0,93,1125 0/0:16,0:16:45.13:0,45,543 0/0:19,0:19:51.16:0,51,638 0/0:11,0:11:33.07:0,33,373 0/0:12,0:12:33.09:0,33,371 0/0:16,0:16:39.12:0,39,485 0/0:8,0:8:18.05:0,18,217 0/0:5,0:5:15.04:0,15,161 0/0:22,0:22:54.15:0,54,651 0/0:25,0:25:66.18:0,66,775 0/0:19,0:19:54.15:0,54,624 0/1:9,5:14:99:139,0,235 0/0:14,0:14:36.11:0,36,440 0/1:10,9:19:99:203,0,281 0/0:19,0:20:42.10:0,42,481 0/0:13,0:13:39.10:0,39,424 0/0:21,0:21:57.15:0,57,657 0/0:11,0:11:33.08:0,33,356 0/0:11,0:11:30.07:0,30,335 0/0:8,0:8:21.05:0,21,239 11 1030228 . A C 420.63 . AC=19;AF=0.271;AN=70;BaseQRankSum=-1.024;DP=91;Dels=0.00;FS=134.679;HRun=3;HaplotypeScore=0.2519;InbreedingCoeff=-0.0619;MQ=56.93;MQ0=0;MQRankSum=0.978;QD=9.14;ReadPosRankSum=-4.341 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,74 ./. 0/1:1,1:2:25.53:26,0,33 0/1:1,1:2:28.34:28,0,29 0/1:1,4:5:23.22:93,0,23 0/0:2,2:4:3.01:0,3,35 0/1:2,3:5:53.90:54,0,55 0/0:1,0:1:3.01:0,3,38 0/1:3,1:4:14.65:15,0,86 0/0:2,0:2:6.02:0,6,73 1/1:0,1:1:3.01:39,3,0 ./. 0/0:1,0:1:3.01:0,3,37 0/0:1,1:2:3.01:0,3,37 0/0:5,0:5:15.05:0,15,180 0/0:1,0:1:3.01:0,3,33 1/1:0,2:2:3:27,3,0 ./. 0/0:2,1:3:6.02:0,6,73 0/1:2,1:3:27.42:27,0,31 0/0:1,0:1:3.01:0,3,37 1/1:0,1:1:3.01:30,3,0 1/1:0,3:3:9.02:106,9,0 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:3.01:0,3,38 0/0:1,1:2:3.01:0,3,34 ./. 0/0:2,0:2:6.02:0,6,71 ./. 0/0:3,0:3:9.03:0,9,111 0/1:1,2:3:30.11:30,0,33 0/1:3,2:5:23.47:23,0,64 0/1:3,1:4:2.10:0,2,67 ./. 0/0:3,0:3:6.01:0,6,60 0/1:2,3:5:44.28:55,0,44 0/0:3,1:4:9.02:0,9,101 ./. 0/0:1,0:1:3.01:0,3,37 0/1:1,0:1:1.76:0,3,32 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.02:0,6,74 11 1030611 . C G 39.53 . AC=7;AF=0.097;AN=72;BaseQRankSum=-3.655;DP=154;Dels=0.00;FS=49.350;HRun=2;HaplotypeScore=0.2250;InbreedingCoeff=0.0744;MQ=57.56;MQ0=0;MQRankSum=0.196;QD=1.88;ReadPosRankSum=-0.588 GT:AD:DP:GQ:PL 1/1:0,1:1:3:29,3,0 ./. 0/1:2,1:3:17.66:18,0,67 0/0:2,0:2:6.02:0,6,81 0/0:3,0:3:6.02:0,6,65 0/0:5,0:5:15.02:0,15,163 ./. 0/0:2,0:2:6.02:0,6,73 0/0:4,0:4:12.03:0,12,143 0/0:2,0:2:6.02:0,6,68 0/0:5,1:6:15.04:0,15,179 ./. 0/0:2,0:2:6.02:0,6,77 0/1:2,2:4:28.33:28,0,33 0/0:15,2:17:13.45:0,13,391 0/0:2,0:2:6.02:0,6,71 ./. 0/0:1,1:2:3.01:0,3,34 0/0:2,1:3:6.02:0,6,79 0/0:5,3:8:9.03:0,9,115 0/0:6,1:7:15.02:0,15,161 0/1:2,2:4:1.76:26,3,0 0/0:2,0:2:6.02:0,6,83 0/0:4,0:4:9.02:0,9,103 0/1:2,1:3:19.63:20,0,53 0/0:3,0:3:6.02:0,6,80 ./. 0/0:2,1:3:6.02:0,6,73 ./. 0/0:4,1:5:6.02:0,6,75 0/0:2,0:2:6.02:0,6,74 0/1:4,2:6:20.46:20,0,99 0/0:6,1:7:18.03:0,18,208 0/0:3,0:3:6.02:0,6,73 0/0:3,1:4:9.03:0,9,109 0/0:2,0:2:3.01:0,3,39 0/0:4,0:4:6.01:0,6,61 0/0:4,0:4:9.03:0,9,108 0/0:2,2:4:6.02:0,6,71 0/0:4,0:4:12.02:0,12,142 0/0:4,0:4:9.03:0,9,111 0/0:8,2:10:24.05:0,24,292 11 1078456 . C T 541.24 . AC=3;AF=0.036;AN=84;BaseQRankSum=3.110;DP=507;Dels=0.00;FS=4.738;HRun=0;HaplotypeScore=0.3410;InbreedingCoeff=-0.0393;MQ=58.27;MQ0=0;MQRankSum=1.267;QD=12.59;ReadPosRankSum=-1.837 GT:AD:DP:GQ:PL 0/0:9,0:9:24.06:0,24,262 0/0:7,0:7:21.04:0,21,213 0/0:9,0:9:24.06:0,24,263 0/1:10,7:17:99:157,0,301 0/1:8,9:17:99:276,0,235 0/0:11,0:11:33.09:0,33,380 0/0:11,0:11:30.09:0,30,356 0/0:14,0:14:42.12:0,42,479 0/0:11,0:11:33.06:0,33,340 0/0:12,0:12:36.09:0,36,389 0/0:16,0:16:45.10:0,45,494 0/0:10,0:10:30.07:0,30,320 0/0:13,0:13:36.09:0,36,410 0/0:6,0:6:18.04:0,18,186 0/0:26,0:26:72.17:0,72,781 0/0:14,0:14:39.09:0,39,424 0/0:9,0:9:24.05:0,24,253 0/0:10,0:10:24.04:0,24,252 0/0:14,0:14:36.09:0,36,392 0/0:19,0:19:51.13:0,51,551 0/0:24,0:24:66.16:0,66,719 0/0:11,0:11:33.08:0,33,354 0/0:26,0:26:72.18:0,72,831 0/0:10,0:10:30.08:0,30,337 0/0:12,0:12:30.07:0,30,334 0/0:6,0:6:18.05:0,18,211 0/0:10,0:10:30.08:0,30,330 0/0:6,0:6:18.03:0,18,182 0/0:13,0:13:27.06:0,27,295 0/0:9,0:9:27.07:0,27,291 0/0:11,0:11:33.08:0,33,354 0/0:19,0:19:57.13:0,57,612 0/0:5,0:5:15.03:0,15,157 0/0:5,0:5:15.04:0,15,174 0/0:8,0:8:18.04:0,18,188 0/0:15,0:15:42.11:0,42,464 0/0:18,0:18:42.08:0,42,444 0/1:3,6:9:63.70:184,0,64 0/0:7,0:7:21.04:0,21,214 0/0:7,0:7:21.04:0,21,224 0/0:11,0:11:33.08:0,33,354 0/0:10,0:10:24.05:0,24,261 11 1078536 . C T 29.25 . AC=2;AF=0.025;AN=80;BaseQRankSum=0.326;DP=152;Dels=0.00;FS=2.181;HRun=0;HaplotypeScore=0.3950;InbreedingCoeff=0.0765;MQ=54.74;MQ0=0;MQRankSum=0.220;QD=7.31;ReadPosRankSum=-0.917 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,180 0/0:4,0:4:12.03:0,12,124 0/0:3,0:3:6.02:0,6,68 0/0:4,0:4:9.02:0,9,101 0/0:3,0:3:9.02:0,9,98 0/0:2,0:2:3:0,3,25 0/0:2,0:2:6.01:0,6,61 ./. 0/0:1,0:1:3.01:0,3,40 0/0:4,0:4:9.03:0,9,109 0/0:3,0:3:9.02:0,9,94 0/0:8,0:8:18.05:0,18,203 0/0:3,0:3:9.02:0,9,100 0/0:6,0:7:18.05:0,18,205 0/0:6,0:6:18.05:0,18,210 ./. 0/0:4,0:4:9.02:0,9,91 0/0:5,0:5:12.03:0,12,134 0/0:1,0:1:3.01:0,3,32 0/0:4,0:4:12.03:0,12,129 0/0:4,0:4:12.02:0,12,121 0/0:1,0:1:3:0,3,28 0/0:6,0:6:12.03:0,12,136 0/1:0,1:1:1.76:33,3,0 0/1:1,2:3:19.63:59,0,20 0/0:3,0:3:9.03:0,9,116 0/0:4,0:4:12.03:0,12,140 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:3.01:0,3,32 0/0:4,0:4:12.04:0,12,150 0/0:6,0:6:15.04:0,15,163 0/0:11,0:12:27.06:0,27,308 0/0:7,0:7:21.05:0,21,237 0/0:1,0:1:3.01:0,3,33 0/0:6,0:6:12.04:0,12,142 0/0:4,0:4:12.03:0,12,138 0/0:2,0:2:3.01:0,3,38 0/0:3,0:3:9.02:0,9,101 0/0:5,0:5:15.03:0,15,151 0/0:1,0:1:3.01:0,3,31 0/0:2,0:2:6.01:0,6,57 0/0:3,0:3:6.02:0,6,72 11 1078538 . C T 112.72 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.833;DP=160;Dels=0.00;FS=4.329;HRun=0;HaplotypeScore=0.3780;InbreedingCoeff=-0.0818;MQ=55.60;MQ0=0;MQRankSum=-1.277;QD=18.79;ReadPosRankSum=1.550 GT:AD:DP:GQ:PL 0/0:6,0:6:18.06:0,18,224 0/0:4,0:4:12.03:0,12,134 0/0:2,0:2:3.01:0,3,39 0/0:4,0:4:9.03:0,9,121 0/0:3,0:3:9.03:0,9,105 0/0:2,0:2:3.01:0,3,42 0/0:2,0:2:6.02:0,6,80 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,40 0/0:4,0:4:9.03:0,9,112 0/0:3,0:3:6.02:0,6,76 0/0:8,0:8:21.04:0,21,243 0/0:3,0:3:9:0,9,99 0/0:5,0:5:12.03:0,12,135 0/0:7,0:7:18.06:0,18,226 0/0:3,0:3:9.03:0,9,114 0/0:4,0:4:9.03:0,9,114 0/0:5,0:5:12.04:0,12,152 0/0:2,0:2:6.02:0,6,67 0/0:4,0:4:9.03:0,9,112 0/0:3,0:3:9.02:0,9,103 0/0:1,0:1:3.01:0,3,39 0/0:6,0:6:12.04:0,12,147 0/0:2,0:2:6.02:0,6,70 0/0:3,0:3:9.03:0,9,111 0/0:3,0:3:9.03:0,9,110 0/0:6,0:6:18.05:0,18,215 0/0:1,0:1:3.01:0,3,38 0/0:4,0:4:9.02:0,9,100 0/0:4,0:4:12.02:0,12,136 0/0:5,0:5:15.05:0,15,193 0/0:10,0:11:24.08:0,24,302 0/1:1,5:6:19.74:158,0,20 0/0:2,0:2:6.02:0,6,76 0/0:6,0:6:18.06:0,18,228 0/0:4,0:4:12.04:0,12,142 0/0:2,0:2:3.01:0,3,38 0/0:3,0:3:9.02:0,9,102 0/0:6,0:6:18.04:0,18,211 0/0:3,0:3:6.02:0,6,75 0/0:2,0:2:6.02:0,6,76 0/0:4,0:4:12.04:0,12,144 11 1080576 . G A 2705.31 . AC=7;AF=0.083;AN=84;BaseQRankSum=9.025;DP=1013;Dels=0.00;FS=3.536;HRun=0;HaplotypeScore=0.9660;InbreedingCoeff=-0.0910;MQ=58.97;MQ0=0;MQRankSum=0.135;QD=13.46;ReadPosRankSum=2.194 GT:AD:DP:GQ:PL 0/0:25,0:25:63.17:0,63,735 0/0:14,0:14:33.07:0,33,356 0/0:21,0:21:54.12:0,54,613 0/0:54,0:54:99:0,147,1765 0/0:44,0:44:99:0,123,1507 0/1:15,10:25:99:244,0,477 0/1:6,19:25:99:552,0,116 0/0:24,0:24:63.14:0,63,706 0/0:20,0:20:51.14:0,51,581 0/1:11,8:19:99:211,0,263 0/0:19,0:19:51.10:0,51,558 0/0:13,0:13:33.09:0,33,378 0/0:16,0:16:45.10:0,45,484 0/0:18,0:18:48.10:0,48,507 0/0:44,0:44:99:0,126,1371 0/0:33,0:33:99:0,99,1083 0/0:11,0:11:27.07:0,27,292 0/0:9,0:9:24.03:0,24,253 0/0:25,0:25:51.13:0,51,564 0/0:43,0:43:99:0,105,1253 0/0:28,0:28:63.17:0,63,729 0/1:18,13:31:99:351,0,461 0/1:27,23:50:99:593,0,700 0/0:19,0:19:48.14:0,48,593 0/0:26,0:26:75.21:0,75,890 0/0:22,0:22:57.16:0,57,692 0/0:14,0:14:39.10:0,39,437 0/0:20,0:20:51.13:0,51,581 0/0:17,0:17:48.12:0,48,536 0/0:28,0:28:78.19:0,78,860 0/0:18,0:18:48.10:0,48,513 0/0:35,0:35:84.22:0,84,993 0/1:15,19:34:99:515,0,368 0/0:15,0:15:42.10:0,42,459 0/0:13,0:13:36.09:0,36,399 0/0:23,0:23:66.11:0,66,676 0/0:39,0:39:99:0,108,1160 0/0:14,0:15:42.11:0,42,461 0/0:21,0:21:51.13:0,51,561 0/0:12,0:12:27.04:0,27,268 0/1:4,13:17:79.06:353,0,79 0/0:14,0:14:36.10:0,36,407 11 1081074 . T C 6129.76 . AC=14;AF=0.167;AN=84;BaseQRankSum=3.177;DP=1636;Dels=0.00;FS=6.986;HRun=0;HaplotypeScore=1.1447;InbreedingCoeff=-0.2000;MQ=58.83;MQ0=0;MQRankSum=1.133;QD=9.62;ReadPosRankSum=0.260 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,114,1298 0/0:39,0:39:99:0,108,1293 0/0:30,0:30:84.25:0,84,1012 0/0:47,0:47:99:0,126,1480 0/0:60,0:60:99:0,159,1912 0/1:29,19:48:99:510,0,756 0/1:20,11:31:99:306,0,543 0/0:46,0:46:99:0,123,1464 0/0:39,0:39:99:0,108,1240 0/1:17,10:27:99:276,0,463 0/0:28,1:29:75.19:0,75,870 0/0:25,0:25:72.20:0,72,840 0/1:20,16:36:99:322,0,590 0/0:49,0:49:99:0,138,1623 0/1:61,38:99:99:895,0,1652 0/1:20,18:38:99:461,0,548 0/0:32,0:32:90.26:0,90,1072 0/1:16,10:26:99:239,0,459 0/1:36,15:51:99:354,0,971 0/1:29,25:54:99:646,0,707 0/1:42,18:61:99:381,0,1126 0/1:16,16:32:99:322,0,369 0/1:34,21:55:99:624,0,888 0/0:30,1:31:72.19:0,72,850 0/0:46,0:46:99:0,129,1545 0/0:32,0:33:75.22:0,75,892 0/0:31,0:31:84.25:0,84,1008 0/0:35,0:35:90.27:0,90,1083 0/0:19,0:20:54.16:0,54,647 0/0:14,0:14:42.12:0,42,489 0/0:30,0:30:81.23:0,81,968 0/1:16,16:32:99:447,0,411 0/1:33,14:47:99:347,0,910 0/0:40,0:40:99:0,114,1343 0/0:41,0:42:99:0,111,1323 0/0:33,0:33:93.24:0,93,1090 0/0:53,0:56:99:0,147,1763 0/0:20,0:20:54.15:0,54,637 0/0:33,1:34:64.71:0,65,1052 0/0:31,0:32:93.27:0,93,1101 0/0:27,0:27:78.22:0,78,915 0/0:40,0:41:99:0,108,1308 11 1081112 . G C 6447.42 . AC=14;AF=0.167;AN=84;BaseQRankSum=10.324;DP=1469;Dels=0.00;FS=4.677;HRun=1;HaplotypeScore=1.1476;InbreedingCoeff=-0.2000;MQ=58.93;MQ0=0;MQRankSum=0.262;QD=10.78;ReadPosRankSum=0.355 GT:AD:DP:GQ:PL 0/0:31,0:31:75.20:0,75,907 0/0:33,0:33:75.21:0,75,958 0/0:24,0:24:69.19:0,69,821 0/0:50,0:50:99:0,123,1586 0/0:49,0:49:99:0,132,1681 0/1:22,21:43:99:586,0,598 0/1:16,17:33:99:449,0,434 0/0:36,0:36:90.28:0,90,1136 0/0:37,0:37:90.22:0,90,1066 0/1:15,18:33:99:557,0,403 0/0:29,0:29:78.23:0,78,936 0/0:21,0:21:63.14:0,63,693 0/1:24,12:36:99:339,0,568 0/0:28,0:28:84.23:0,84,998 0/1:43,35:78:99:902,0,1101 0/1:21,12:33:99:327,0,629 0/0:27,0:27:72.22:0,72,893 0/1:19,8:27:99:212,0,575 0/1:33,10:43:99:250,0,852 0/1:28,15:43:99:383,0,839 0/1:47,19:66:99:473,0,1224 0/1:18,18:36:99:541,0,440 0/1:26,23:49:99:653,0,825 0/0:40,0:40:96.28:0,96,1238 0/0:47,0:47:99:0,126,1576 0/0:36,0:36:78.24:0,78,1021 0/0:16,0:16:39.11:0,39,484 0/0:28,0:28:78.23:0,78,952 0/0:20,0:20:54.14:0,54,622 0/0:23,0:23:66.20:0,66,809 0/0:28,0:28:81.23:0,81,960 0/1:16,15:31:99:389,0,465 0/1:30,16:47:99:387,0,845 0/0:38,0:38:99:0,102,1231 0/0:31,0:31:87.25:0,87,1037 0/0:22,0:22:60.17:0,60,724 0/0:37,0:39:96.23:0,96,1114 0/0:28,0:28:72.21:0,72,879 0/0:31,0:31:78.23:0,78,948 0/0:30,0:30:78.20:0,78,904 0/0:24,0:24:69.21:0,69,843 0/0:25,0:25:72.21:0,72,864 11 1081141 . C T 2944.98 . AC=8;AF=0.095;AN=84;BaseQRankSum=6.729;DP=1309;Dels=0.00;FS=31.747;HRun=0;HaplotypeScore=2.8938;InbreedingCoeff=-0.1053;MQ=58.78;MQ0=0;MQRankSum=-2.671;QD=8.92;ReadPosRankSum=-1.230 GT:AD:DP:GQ:PL 0/0:30,0:30:78.20:0,78,877 0/0:24,0:24:63.17:0,63,741 0/0:23,0:23:63.18:0,63,732 0/0:52,0:53:99:0,135,1672 0/0:42,0:42:99:0,123,1511 0/0:38,0:38:93.24:0,93,1126 0/0:31,0:31:84.23:0,84,1023 0/0:41,0:41:99:0,108,1285 0/0:26,0:26:75.20:0,75,827 0/0:31,0:31:90.25:0,90,1031 0/0:21,0:21:57.15:0,57,658 0/0:14,0:14:39.11:0,39,450 0/1:21,8:29:99:186,0,598 0/0:22,0:22:60.17:0,60,684 0/1:43,28:71:99:762,0,1048 0/1:19,5:24:99:113,0,558 0/0:22,0:22:66.17:0,66,737 0/1:19,8:27:99:209,0,523 0/1:27,11:38:99:293,0,698 0/1:26,17:43:99:451,0,687 0/1:38,26:64:99:690,0,973 0/0:38,0:38:99:0,99,1144 0/0:40,0:40:99:0,114,1393 0/0:39,0:39:93.29:0,93,1187 0/0:41,0:41:99:0,108,1323 0/0:29,0:29:81.23:0,81,975 0/0:15,0:15:39.10:0,39,416 0/0:30,0:30:78.21:0,78,905 0/0:21,0:21:51.13:0,51,590 0/0:20,0:20:60.17:0,60,679 0/0:25,0:25:69.17:0,69,777 0/1:21,13:34:99:361,0,567 0/0:30,0:30:81.21:0,81,927 0/0:30,0:30:75.20:0,75,857 0/0:23,0:23:69.19:0,69,781 0/0:23,0:23:63.16:0,63,712 0/0:42,0:42:99:0,111,1264 0/0:23,0:23:63.17:0,63,731 0/0:27,0:27:75.21:0,75,867 0/0:21,0:21:57.16:0,57,660 0/0:21,0:21:57.15:0,57,626 0/0:23,0:23:66.17:0,66,727 11 1084801 . G A 318.49 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.745;DP=630;Dels=0.00;FS=6.114;HRun=0;HaplotypeScore=1.0317;InbreedingCoeff=-0.0253;MQ=58.49;MQ0=0;MQRankSum=1.802;QD=9.95;ReadPosRankSum=0.595 GT:AD:DP:GQ:PL 0/0:17,0:17:45.14:0,45,583 0/0:14,0:14:36.11:0,36,454 0/0:18,0:18:48.15:0,48,610 0/0:19,0:19:48.16:0,48,644 0/0:17,0:17:48.14:0,48,617 0/0:9,0:9:24.07:0,24,309 0/0:15,0:15:30.10:0,30,417 0/0:15,0:15:45.15:0,45,612 0/0:10,0:10:27.08:0,27,343 0/0:16,0:16:48.15:0,48,600 0/0:23,0:23:63.17:0,63,788 0/0:6,0:6:18.06:0,18,220 0/0:8,0:8:21.07:0,21,266 0/0:17,0:17:42.12:0,42,533 0/0:42,0:42:99:0,108,1379 0/0:12,0:12:36.11:0,36,449 0/0:13,0:13:36.11:0,36,454 0/0:11,0:11:27.08:0,27,346 0/0:14,0:14:33.10:0,33,415 0/0:21,0:21:60.19:0,60,763 0/0:14,0:15:39.12:0,39,489 0/0:19,0:19:51.16:0,51,649 0/0:18,0:18:48.16:0,48,658 0/0:12,0:12:36.11:0,36,455 0/0:14,0:14:39.13:0,39,532 0/0:9,0:9:21.06:0,21,277 0/0:14,0:14:42.12:0,42,504 0/0:15,0:15:42.13:0,42,528 0/0:11,0:11:21.07:0,21,285 0/0:12,0:12:30.09:0,30,377 0/0:9,0:9:21.07:0,21,278 0/0:17,0:17:45.14:0,45,580 0/0:18,0:18:51.13:0,51,616 0/0:13,0:13:39.13:0,39,500 0/0:12,0:12:30.08:0,30,376 0/0:15,0:15:39.12:0,39,485 0/0:19,0:19:48.15:0,48,611 0/0:23,0:23:54.17:0,54,701 0/0:6,0:6:18.06:0,18,227 0/1:5,8:13:99:233,0,146 0/0:10,0:10:30.09:0,30,370 0/1:13,6:19:99:148,0,367 11 1084821 . T C 2674 . AC=13;AF=0.155;AN=84;BaseQRankSum=-4.633;DP=638;Dels=0.00;FS=16.050;HRun=0;HaplotypeScore=0.6085;InbreedingCoeff=-0.1928;MQ=58.84;MQ0=0;MQRankSum=1.684;QD=11.10;ReadPosRankSum=-2.171 GT:AD:DP:GQ:PL 0/0:11,0:11:33.10:0,33,404 0/0:11,0:11:30.09:0,30,359 0/0:15,0:15:36.11:0,36,455 0/0:21,0:21:57.17:0,57,697 0/0:17,0:17:45.13:0,45,542 0/1:6,8:14:99:231,0,117 0/1:8,8:16:99:202,0,230 0/0:15,0:15:42.13:0,42,508 0/0:10,0:10:24.07:0,24,296 0/1:8,3:11:76.37:76,0,218 0/0:15,0:15:45.13:0,45,533 0/0:8,0:8:24.07:0,24,283 0/1:6,7:13:99:182,0,158 0/0:15,0:15:42.13:0,42,515 0/1:27,20:47:99:462,0,698 0/1:6,3:9:77.90:78,0,169 0/0:14,0:14:42.13:0,42,499 0/1:9,6:15:99:164,0,177 0/0:7,1:8:18.05:0,18,216 0/1:16,7:23:97.33:97,0,485 0/1:4,11:15:92.01:317,0,92 0/1:17,6:23:99:131,0,477 0/1:11,9:20:99:257,0,307 0/0:13,0:13:36.10:0,36,434 0/0:17,0:17:45.13:0,45,531 0/0:8,0:8:21.06:0,21,256 0/0:11,0:11:33.10:0,33,394 0/0:15,0:15:39.11:0,39,471 0/0:9,0:9:21.06:0,21,265 0/0:17,0:17:51.14:0,51,589 0/0:8,0:8:21.06:0,21,251 0/1:6,11:17:99:306,0,170 0/1:7,11:18:99:318,0,163 0/0:18,0:18:51.15:0,51,598 0/0:11,0:11:33.10:0,33,393 0/0:14,0:14:36.11:0,36,431 0/0:20,0:20:51.16:0,51,624 0/0:20,0:20:54.17:0,54,666 0/0:7,0:7:21.06:0,21,242 0/0:22,0:22:63.19:0,63,753 0/0:11,1:12:2.84:0,0,323 0/0:15,0:15:42.09:0,42,470 11 1090343 . T C 1797.14 . AC=10;AF=0.119;AN=84;BaseQRankSum=9.802;DP=656;Dels=0.00;FS=4.208;HRun=0;HaplotypeScore=0.4952;InbreedingCoeff=-0.1405;MQ=58.99;MQ0=0;MQRankSum=-0.502;QD=10.63;ReadPosRankSum=1.288 GT:AD:DP:GQ:PL 0/0:18,0:18:42.10:0,42,523 0/0:13,0:13:36.07:0,36,396 0/0:10,0:10:27.08:0,27,313 0/0:33,0:33:81.23:0,81,996 0/0:23,0:23:57.16:0,57,690 0/0:14,0:14:33.10:0,33,425 0/1:9,5:14:99:146,0,259 0/0:16,0:16:36.11:0,36,453 0/0:14,0:14:36.11:0,36,440 0/0:14,0:14:36.11:0,36,436 0/0:14,0:14:33.10:0,33,398 0/0:16,0:16:42.12:0,42,502 0/1:2,4:6:41.13:134,0,41 0/0:20,0:20:48.14:0,48,591 0/1:26,18:44:99:513,0,586 0/1:10,4:14:85.81:86,0,292 0/0:16,2:18:3.48:0,3,478 0/1:4,5:9:99:140,0,115 0/1:9,8:18:99:208,0,252 0/1:15,10:25:99:285,0,370 0/1:8,6:14:99:190,0,231 0/0:16,0:16:42.13:0,42,511 0/0:31,0:31:72.22:0,72,908 0/0:10,0:10:24.07:0,24,298 0/0:14,0:14:33.09:0,33,409 0/0:9,0:9:24.07:0,24,297 0/0:6,0:6:18.05:0,18,211 0/0:10,0:10:30.09:0,30,353 0/0:18,0:18:42.13:0,42,531 0/0:18,0:18:51.15:0,51,599 0/0:17,0:17:45.14:0,45,549 0/1:8,10:18:99:211,0,237 0/0:24,0:24:63.18:0,63,758 0/0:11,0:11:27.08:0,27,332 0/0:10,0:10:24.07:0,24,301 0/0:8,0:8:18.05:0,18,221 0/0:17,0:17:48.13:0,48,568 0/0:9,0:9:27.06:0,27,291 0/0:15,0:15:45.12:0,45,512 0/0:9,0:9:24.07:0,24,296 0/1:6,1:7:17.54:18,0,170 0/0:12,0:12:33.09:0,33,386 11 1095145 . A G 478.11 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.327;DP=1185;Dels=0.00;FS=6.174;HRun=0;HaplotypeScore=0.7346;InbreedingCoeff=-0.0244;MQ=58.47;MQ0=0;MQRankSum=0.934;QD=11.66;ReadPosRankSum=-0.688 GT:AD:DP:GQ:PL 0/0:24,0:24:60.19:0,60,752 0/0:26,0:26:63.19:0,63,788 0/0:34,0:34:96.28:0,96,1154 0/0:34,0:34:87.27:0,87,1096 0/0:30,0:30:81.24:0,81,995 0/1:9,14:23:99:393,0,219 0/1:11,7:18:99:147,0,311 0/0:19,0:19:57.17:0,57,693 0/0:26,0:26:66.20:0,66,807 0/0:30,0:30:75.23:0,75,935 0/0:23,0:23:69.17:0,69,790 0/0:19,0:19:51.15:0,51,622 0/0:18,0:18:48.13:0,48,586 0/0:25,0:25:69.21:0,69,835 0/0:91,0:91:99:0,238,2857 0/0:25,0:25:72.21:0,72,855 0/0:24,0:24:72.21:0,72,858 0/0:21,0:21:63.18:0,63,747 0/0:50,0:51:99:0,132,1599 0/0:52,0:52:99:0,147,1794 0/0:41,0:41:99:0,120,1441 0/0:39,0:39:96.28:0,96,1203 0/0:27,0:27:69.20:0,69,844 0/0:16,0:16:42.13:0,42,529 0/0:13,0:13:39.12:0,39,482 0/0:18,0:18:45.14:0,45,579 0/0:12,0:12:33.09:0,33,386 0/0:33,0:33:78.24:0,78,990 0/0:17,0:17:48.15:0,48,594 0/0:28,0:28:78.24:0,78,948 0/0:21,0:21:57.16:0,57,681 0/0:54,0:54:99:0,135,1700 0/0:28,0:28:72.22:0,72,904 0/0:24,0:24:63.19:0,63,781 0/0:25,0:25:75.21:0,75,892 0/0:16,0:16:45.13:0,45,536 0/0:41,0:41:99:0,105,1285 0/0:17,0:17:42.12:0,42,493 0/0:23,0:23:63.20:0,63,777 0/0:34,0:34:96.29:0,96,1175 0/0:24,0:24:69.19:0,69,817 0/0:21,0:21:60.18:0,60,730 11 1096494 . T C 75356.23 . AC=56;AF=0.667;AN=84;BaseQRankSum=19.335;DP=3660;DS;Dels=0.00;FS=9.476;HRun=4;HaplotypeScore=3.1900;InbreedingCoeff=0.0357;MQ=59.22;MQ0=0;MQRankSum=-0.973;QD=22.94;ReadPosRankSum=-0.695 GT:AD:DP:GQ:PL 0/1:51,32:83:99:794,0,1452 0/0:95,0:95:99:0,247,2985 0/0:69,1:71:99:0,155,2246 1/1:1,88:89:99:2816,189,0 1/1:0,69:69:99:2555,193,0 1/1:0,66:66:99:2338,178,0 1/1:0,57:57:99:1979,147,0 0/1:33,36:69:99:1145,0,919 1/1:0,98:98:99:3062,250,0 1/1:0,58:59:99:1906,159,0 1/1:0,82:82:99:2512,202,0 0/1:28,29:57:99:861,0,712 0/1:30,22:53:99:569,0,850 0/1:47,35:82:99:738,0,1387 0/1:106,120:226:99:3252,0,2802 0/1:31,35:66:99:932,0,854 1/1:0,69:69:99:2170,175,0 1/1:0,80:80:99:2699,220,0 1/1:0,136:137:99:4174,340,0 1/1:0,166:166:99:5351,418,0 0/1:76,80:157:99:2218,0,2045 0/1:51,47:98:99:1293,0,1289 1/1:0,98:98:99:3370,259,0 0/0:42,0:42:99:0,117,1395 0/0:75,0:75:99:0,196,2373 0/1:30,19:49:99:547,0,817 1/1:0,67:67:99:2178,178,0 1/1:0,75:75:99:2385,193,0 1/1:1,71:72:99:2257,160,0 0/1:46,57:103:99:1518,0,1145 0/1:36,29:65:99:698,0,1045 1/1:0,162:163:99:5252,412,0 0/1:36,55:91:99:1565,0,929 0/1:31,45:76:99:1220,0,881 0/1:41,44:85:99:1074,0,1142 0/1:53,35:88:99:800,0,1557 0/1:63,61:125:99:1595,0,1559 1/1:0,70:70:99:2360,196,0 0/0:92,0:92:99:0,259,3079 1/1:0,60:60:99:1929,159,0 0/1:27,32:59:99:949,0,718 1/1:0,71:72:99:2297,184,0 11 1101649 . T C 45329.10 . AC=38;AF=0.452;AN=84;BaseQRankSum=17.482;DP=3388;DS;Dels=0.00;FS=9.557;HRun=2;HaplotypeScore=2.2465;InbreedingCoeff=-0.1533;MQ=59.29;MQ0=0;MQRankSum=0.616;QD=17.31;ReadPosRankSum=0.442 GT:AD:DP:GQ:PL 0/0:69,0:69:99:0,196,2419 0/0:75,0:75:99:0,193,2447 0/1:36,31:67:99:854,0,1000 0/1:90,73:163:99:2247,0,2580 0/1:49,61:111:99:1892,0,1379 0/1:39,39:78:99:1140,0,1164 1/1:0,74:74:99:2646,196,0 0/1:48,48:96:99:1474,0,1454 1/1:1,73:74:99:2479,165,0 0/1:29,35:64:99:923,0,766 1/1:1,54:55:99:1881,115,0 0/1:35,31:66:99:909,0,997 1/1:1,38:39:67.53:1270,68,0 0/1:39,33:72:99:995,0,1149 0/1:87,76:163:99:2224,0,2327 0/1:33,18:51:99:519,0,1002 0/0:68,0:68:99:0,169,2146 0/1:31,20:51:99:556,0,881 0/1:68,54:122:99:1443,0,1759 0/1:66,65:131:99:1823,0,1876 0/1:58,55:113:99:1570,0,1610 0/0:89,1:90:99:0,204,2902 0/1:68,70:138:99:2116,0,1974 0/0:57,0:57:99:0,147,1884 0/0:78,0:78:99:0,208,2688 0/0:69,0:69:99:0,184,2366 0/1:25,31:56:99:950,0,737 0/0:83,0:84:99:0,226,2760 0/1:29,31:60:99:967,0,865 0/1:42,21:63:99:597,0,1251 0/0:61,0:61:99:0,153,1931 0/1:65,61:126:99:1831,0,1650 1/1:0,78:80:99:2607,205,0 0/1:32,27:59:99:774,0,887 0/1:31,35:66:99:1008,0,877 1/1:0,61:61:99:2062,160,0 0/1:64,61:125:99:1573,0,1776 0/1:21,40:61:99:1110,0,565 1/1:0,62:62:99:2165,172,0 0/0:68,0:68:99:0,187,2297 0/0:50,1:51:99:0,111,1710 0/1:37,24:61:99:723,0,1112 11 1103192 . G A 797.52 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.227;DP=3037;Dels=0.00;FS=4.811;HRun=0;HaplotypeScore=1.9877;InbreedingCoeff=-0.0120;MQ=59.33;MQ0=1;MQRankSum=0.128;QD=15.95;ReadPosRankSum=0.787 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,111,1294 0/0:36,0:36:96.24:0,96,1083 0/0:48,0:48:99:0,123,1405 0/0:153,0:154:99:0,346,4456 0/0:139,0:139:99:0,343,4310 0/0:90,0:90:99:0,223,2816 0/0:63,0:63:99:0,147,1892 0/0:65,1:66:99:0,137,2081 0/0:51,0:51:99:0,126,1469 0/0:64,0:65:99:0,156,1780 0/0:54,0:54:99:0,153,1688 0/0:44,0:44:99:0,111,1290 0/0:37,0:37:96.23:0,96,1063 0/0:48,0:48:99:0,123,1438 0/0:201,0:203:99:0,484,5628 0/0:65,0:65:99:0,168,1948 0/0:52,0:52:99:0,138,1548 0/0:55,0:55:99:0,147,1700 0/0:94,0:95:99:0,256,2860 0/0:92,0:92:99:0,253,2837 0/0:92,0:92:99:0,229,2639 0/0:71,0:72:99:0,192,2149 0/0:138,0:138:99:0,328,4253 0/0:78,0:78:99:0,202,2521 0/0:99,0:99:99:0,247,3083 0/0:102,0:102:99:0,235,2955 0/0:40,0:40:99:0,111,1238 0/0:47,0:47:99:0,132,1459 0/0:51,0:51:99:0,147,1646 0/0:50,0:50:99:0,135,1521 0/0:40,0:40:99:0,102,1150 0/0:131,0:131:99:0,343,3925 0/0:91,0:91:99:0,226,2580 0/0:54,0:54:99:0,150,1691 0/0:59,0:60:99:0,150,1745 0/1:21,29:50:99:844,0,520 0/0:91,0:93:99:0,244,2723 0/0:49,0:49:99:0,135,1473 0/0:50,0:50:99:0,138,1567 0/0:39,0:39:99:0,108,1205 0/0:43,0:43:99:0,114,1322 0/0:67,0:67:99:0,180,2112 11 1103296 . T C 3658.71 . AC=5;AF=0.060;AN=84;BaseQRankSum=-8.988;DP=2566;Dels=0.00;FS=2.061;HRun=0;HaplotypeScore=0.7486;InbreedingCoeff=-0.0633;MQ=59.22;MQ0=0;MQRankSum=0.940;QD=10.86;ReadPosRankSum=0.796 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,108,1324 0/0:42,0:42:99:0,114,1403 0/0:39,0:39:99:0,111,1335 0/0:81,0:82:99:0,220,2702 0/0:96,0:96:99:0,262,3235 0/0:55,0:55:99:0,153,1934 0/1:29,21:50:99:572,0,835 0/0:77,0:77:99:0,202,2533 0/0:45,0:45:99:0,126,1556 0/0:38,0:38:99:0,105,1266 0/0:58,0:58:99:0,156,1880 0/0:32,0:32:96.29:0,96,1163 0/0:35,0:35:99:0,102,1210 0/0:43,0:43:99:0,120,1460 0/0:174,0:174:99:0,460,5643 0/0:57,0:57:99:0,159,1937 0/0:46,0:46:99:0,123,1499 0/1:30,22:52:99:531,0,876 0/1:47,46:93:99:1143,0,1378 0/1:51,29:80:99:716,0,1366 0/0:101,0:101:99:0,265,3271 0/0:70,0:70:99:0,193,2332 0/0:114,0:114:99:0,298,3748 0/0:62,0:62:99:0,165,2093 0/0:64,0:64:99:0,184,2268 0/0:62,0:62:99:0,166,2055 0/0:42,0:42:99:0,123,1490 0/0:45,1:46:97.83:0,98,1498 0/0:47,0:47:99:0,126,1535 0/0:51,0:51:99:0,144,1767 0/0:40,0:40:99:0,105,1282 0/0:116,0:116:99:0,322,3954 0/0:78,0:78:99:0,211,2569 0/0:43,0:44:99:0,129,1575 0/0:44,0:44:99:0,129,1565 0/0:41,0:41:99:0,108,1365 0/0:78,0:78:99:0,229,2782 0/0:41,0:42:99:0,111,1333 0/0:44,0:44:99:0,129,1569 0/0:40,0:40:99:0,120,1445 0/0:45,1:46:87.86:0,88,1429 0/1:35,27:62:99:697,0,971 11 1103313 . T G 1003.02 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.007;DP=1985;Dels=0.00;FS=0.764;HRun=0;HaplotypeScore=1.2444;InbreedingCoeff=-0.0244;MQ=59.31;MQ0=0;MQRankSum=1.375;QD=19.29;ReadPosRankSum=-0.735 GT:AD:DP:GQ:PL 0/0:28,0:28:78.23:0,78,938 0/0:26,0:26:72.20:0,72,864 0/0:29,0:29:84.26:0,84,1022 0/0:65,0:65:99:0,175,2116 0/0:81,1:82:99:0,214,2624 0/0:52,0:52:99:0,141,1701 0/0:36,0:36:93.29:0,93,1166 0/0:63,0:63:99:0,166,2049 0/0:39,0:39:99:0,108,1286 0/0:26,0:26:72.19:0,72,845 0/0:46,0:46:99:0,120,1471 0/1:8,10:18:99:325,0,239 0/0:34,0:34:87.26:0,87,1058 0/1:11,23:34:99:740,0,251 0/0:129,1:130:99:0,361,4293 0/0:49,0:49:99:0,141,1649 0/0:41,0:41:99:0,111,1334 0/0:36,0:36:99:0,105,1246 0/0:81,0:81:99:0,220,2652 0/0:59,0:59:99:0,165,1968 0/0:76,0:77:99:0,190,2287 0/0:57,0:57:99:0,159,1869 0/0:88,0:89:99:0,244,2947 0/0:54,0:54:99:0,132,1655 0/0:49,0:49:99:0,123,1494 0/0:54,0:54:99:0,138,1724 0/0:33,0:33:93.27:0,93,1111 0/0:31,0:31:90.25:0,90,1064 0/0:35,0:35:93.28:0,93,1121 0/0:34,0:34:90.27:0,90,1090 0/0:31,0:31:87.26:0,87,1051 0/0:88,0:88:99:0,247,2945 0/0:46,2:48:99:0,129,1519 0/0:32,0:33:96.30:0,96,1169 0/0:32,0:32:90.25:0,90,1083 0/0:29,0:29:81.24:0,81,973 0/0:60,0:61:99:0,171,2032 0/0:33,0:33:84.25:0,84,1004 0/0:34,0:34:99:0,99,1180 0/0:29,0:29:84.25:0,84,1003 0/0:34,0:34:90.26:0,90,1080 0/0:46,0:46:99:0,132,1604 11 1103853 . G A 53.45 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.170;DP=250;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1656;InbreedingCoeff=-0.0460;MQ=58.25;MQ0=0;MQRankSum=0.921;QD=6.68;ReadPosRankSum=0.166 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,278 0/0:2,0:2:6.02:0,6,69 0/0:7,0:7:18.05:0,18,215 0/0:12,0:12:30.09:0,30,368 0/0:7,0:7:21.06:0,21,255 0/0:2,0:2:5.99:0,6,59 0/0:1,0:1:3.01:0,3,41 0/0:6,0:6:15.05:0,15,182 0/0:5,0:5:15.04:0,15,178 0/0:5,0:5:15.04:0,15,172 0/0:5,0:5:15.04:0,15,172 0/0:5,0:5:12.03:0,12,145 0/0:5,0:5:15.04:0,15,169 0/0:3,0:3:9.02:0,9,100 0/0:16,0:16:42.10:0,42,462 0/0:9,0:9:24.05:0,24,264 0/0:7,0:7:18.05:0,18,210 0/0:4,0:4:12.03:0,12,130 0/0:9,0:9:27.08:0,27,316 0/0:9,0:9:27.07:0,27,294 0/0:11,0:11:27.04:0,27,279 0/0:4,0:4:12.04:0,12,140 0/0:9,0:9:27.08:0,27,322 0/0:2,0:2:6.02:0,6,69 0/0:5,0:5:15.02:0,15,171 0/0:2,0:2:3.01:0,3,45 0/0:4,0:4:12.03:0,12,136 0/0:4,0:4:12.04:0,12,141 0/0:4,0:4:12.03:0,12,136 0/0:4,0:4:12.02:0,12,122 0/0:4,0:4:12.03:0,12,135 0/0:7,0:7:18.05:0,18,212 0/0:2,0:3:6.01:0,6,62 0/0:8,0:8:21.06:0,21,247 0/0:6,0:6:15.04:0,15,160 0/0:5,0:5:15.04:0,15,172 0/0:13,0:13:27.08:0,27,336 0/0:2,0:2:6.02:0,6,72 0/0:10,0:10:21.06:0,21,267 0/0:4,0:4:12.03:0,12,134 0/0:4,0:4:12.03:0,12,139 0/1:4,4:8:99:99,0,107 11 1103873 . C T 394.63 . AC=4;AF=0.049;AN=82;BaseQRankSum=0.632;DP=308;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.6098;InbreedingCoeff=-0.0767;MQ=58.68;MQ0=0;MQRankSum=0.503;QD=10.67;ReadPosRankSum=-0.472 GT:AD:DP:GQ:PL 0/0:12,0:12:36.09:0,36,395 0/0:2,0:2:6.02:0,6,69 0/0:9,0:9:24.06:0,24,273 0/0:12,0:12:33.10:0,33,414 0/0:8,0:8:24.08:0,24,321 0/0:4,0:4:12.03:0,12,149 ./. 0/0:7,0:7:15.05:0,15,188 0/0:8,0:8:21.06:0,21,247 0/0:7,0:7:18.05:0,18,221 0/0:4,0:4:12.04:0,12,142 0/0:4,0:4:12.04:0,12,142 0/0:7,0:7:18.03:0,18,208 0/0:6,0:6:12.04:0,12,154 0/0:21,0:21:51.13:0,51,594 0/0:11,0:11:24.07:0,24,290 0/0:10,0:10:27.07:0,27,311 0/1:3,2:5:58.06:58,0,96 0/1:4,6:10:99:176,0,107 0/1:10,6:16:99:155,0,284 0/0:12,0:12:36.09:0,36,398 0/0:7,0:7:12.03:0,12,144 0/0:9,0:9:27.08:0,27,337 0/0:1,0:1:3.01:0,3,41 0/0:3,0:3:9.03:0,9,116 0/0:4,0:4:9.02:0,9,110 0/0:5,0:5:12.03:0,12,137 0/0:1,0:1:3.01:0,3,33 0/0:9,0:9:24.06:0,24,268 0/0:6,0:6:18.05:0,18,210 0/0:5,0:5:12.03:0,12,147 0/0:11,0:11:27.07:0,27,318 0/0:3,0:3:9.02:0,9,101 0/0:6,0:6:15.04:0,15,184 0/0:7,0:7:18.06:0,18,219 0/0:8,0:8:21.06:0,21,250 0/0:14,0:14:36.10:0,36,423 0/0:5,0:5:15.04:0,15,173 0/0:11,0:11:27.08:0,27,331 0/0:7,0:7:18.01:0,18,183 0/0:5,0:5:15.03:0,15,162 0/1:3,3:6:82.55:90,0,83 11 1103876 . C T 482.83 . AC=6;AF=0.073;AN=82;BaseQRankSum=1.881;DP=323;Dels=0.00;FS=7.753;HRun=0;HaplotypeScore=0.6269;InbreedingCoeff=-0.1153;MQ=58.48;MQ0=0;MQRankSum=0.001;QD=9.85;ReadPosRankSum=1.701 GT:AD:DP:GQ:PL 0/0:12,0:12:36.09:0,36,407 0/0:2,0:2:6.02:0,6,69 0/0:9,0:9:24.05:0,24,273 0/1:7,6:13:99:183,0,186 0/1:5,3:8:91.61:92,0,181 0/0:4,0:4:12.02:0,12,142 ./. 0/0:7,0:7:15.04:0,15,183 0/0:8,0:8:18.05:0,18,215 0/0:8,0:8:21.06:0,21,255 0/0:4,0:4:12.04:0,12,145 0/0:5,0:5:12.04:0,12,149 0/1:3,3:6:61.89:62,0,67 0/0:6,0:6:15.04:0,15,189 0/0:21,0:21:51.14:0,51,602 0/0:11,0:11:27.08:0,27,320 0/0:10,0:10:27.08:0,27,329 0/0:7,0:7:21.07:0,21,266 0/0:10,0:10:27.07:0,27,311 0/0:18,0:18:45.14:0,45,577 0/0:12,0:12:33.09:0,33,369 0/0:7,0:7:15.04:0,15,179 0/0:12,0:12:36.11:0,36,444 0/0:1,0:1:3.01:0,3,42 0/0:3,0:3:9.03:0,9,116 0/0:4,0:4:9.03:0,9,121 0/0:5,0:5:15.03:0,15,170 0/0:1,0:1:3.01:0,3,32 0/0:9,0:9:24.07:0,24,295 0/0:6,0:6:15.05:0,15,182 0/0:7,0:7:18.05:0,18,216 0/0:10,1:11:0.81:7,0,287 0/0:3,0:3:9.02:0,9,103 0/0:7,0:7:18.05:0,18,215 0/1:7,1:8:12.91:13,0,227 0/1:3,6:9:72.51:136,0,73 0/0:14,0:14:36.11:0,36,441 0/1:2,3:5:54.43:97,0,54 0/0:12,0:12:30.08:0,30,363 0/0:6,0:6:15.04:0,15,174 0/0:5,0:5:12.03:0,12,138 0/0:7,0:7:21.05:0,21,234 11 1151695 . C T 1881.23 . AC=17;AF=0.202;AN=84;BaseQRankSum=-9.147;DP=394;Dels=0.00;FS=1.578;HRun=0;HaplotypeScore=0.1591;InbreedingCoeff=-0.0310;MQ=58.49;MQ0=0;MQRankSum=-0.097;QD=11.91;ReadPosRankSum=0.243 GT:AD:DP:GQ:PL 0/0:7,0:7:18.06:0,18,224 0/0:10,0:10:24.07:0,24,294 0/0:8,0:8:24.07:0,24,283 0/1:18,14:32:99:337,0,537 0/0:12,0:12:30.10:0,30,411 0/1:4,4:8:94.56:96,0,95 1/1:0,8:8:21.06:242,21,0 0/0:6,0:6:15.05:0,15,193 0/0:8,0:8:18.06:0,18,234 0/0:3,0:3:9.03:0,9,115 0/0:8,0:8:21.07:0,21,267 0/1:3,3:6:69.04:87,0,69 0/1:0,2:2:0.97:66,6,0 0/1:3,1:4:24.41:24,0,72 0/0:38,0:38:90.28:0,90,1160 0/0:11,0:11:27.09:0,27,353 0/0:6,0:6:18.05:0,18,210 0/1:1,3:4:24.09:91,0,24 0/1:5,8:13:99:212,0,143 0/1:9,7:16:99:203,0,196 0/1:4,5:9:99:102,0,112 0/0:4,0:4:12.03:0,12,144 0/1:11,4:15:90.15:90,0,394 0/0:15,0:15:36.12:0,36,503 0/0:8,0:8:24.08:0,24,323 0/0:15,0:15:33.11:0,33,466 0/0:6,0:6:18.05:0,18,219 0/0:3,0:3:9.02:0,9,102 0/0:6,0:6:15.05:0,15,200 0/0:12,0:12:30.09:0,30,386 0/0:9,0:9:21.07:0,21,276 0/1:8,7:15:99:181,0,225 0/0:8,0:8:24.08:0,24,307 0/1:4,3:7:83.69:84,0,130 0/1:5,3:8:61.05:61,0,138 0/1:1,5:6:21.95:158,0,22 0/0:13,0:13:33.10:0,33,412 0/0:4,0:4:12.03:0,12,136 0/0:3,0:3:9.03:0,9,110 0/0:7,0:7:18.06:0,18,232 0/0:6,0:6:15.04:0,15,186 0/1:4,1:5:21.08:21,0,135 11 1155597 . C T 144.77 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.159;DP=776;Dels=0.00;FS=1.519;HRun=0;HaplotypeScore=0.4981;InbreedingCoeff=-0.0133;MQ=57.91;MQ0=1;MQRankSum=0.938;QD=9.05;ReadPosRankSum=-0.741 GT:AD:DP:GQ:PL 0/0:16,0:16:48.13:0,48,549 0/0:17,0:17:48.11:0,48,527 0/0:8,0:8:21.05:0,21,226 0/0:25,0:25:69.19:0,69,839 0/0:18,0:18:48.14:0,48,587 0/0:12,0:12:33.10:0,33,401 0/0:14,0:14:39.12:0,39,475 0/0:4,0:4:12.04:0,12,146 0/0:19,0:19:48.09:0,48,515 0/0:12,0:12:36.09:0,36,396 0/0:12,0:12:33.08:0,33,355 0/0:20,0:20:51.14:0,51,588 0/0:10,0:10:27.08:0,27,324 0/0:18,0:18:48.13:0,48,566 0/0:66,0:66:99:0,177,2035 0/0:13,0:13:36.09:0,36,391 0/0:20,0:20:57.16:0,57,655 0/0:11,0:11:33.08:0,33,365 0/0:17,0:17:42.11:0,42,467 0/0:35,0:35:84.20:0,84,975 0/0:36,0:36:84.22:0,84,972 0/0:20,0:20:57.15:0,57,655 0/0:35,0:35:96.28:0,96,1153 0/0:16,0:16:45.11:0,45,498 0/0:6,0:6:18.04:0,18,214 0/0:18,0:18:42.14:0,42,549 0/0:6,0:6:18.04:0,18,189 0/0:23,0:23:60.12:0,60,637 0/0:12,0:12:33.07:0,33,367 0/0:13,0:13:36.10:0,36,423 0/0:14,0:14:39.10:0,39,439 0/0:33,0:33:87.22:0,87,1018 0/0:17,0:18:48.14:0,48,565 0/0:10,0:10:30.08:0,30,337 0/0:15,0:15:42.10:0,42,464 0/1:9,7:16:99:191,0,251 0/0:26,0:26:69.19:0,69,800 0/0:19,0:19:48.11:0,48,554 0/0:17,0:17:48.13:0,48,543 0/0:24,0:24:69.17:0,69,762 0/0:11,0:11:30.09:0,30,364 0/0:21,0:21:57.12:0,57,615 11 1158073 . T C 21352.09 . AC=70;AF=0.833;AN=84;BaseQRankSum=-0.421;DP=892;Dels=0.00;FS=1.313;HRun=0;HaplotypeScore=0.8250;InbreedingCoeff=0.1416;MQ=58.36;MQ0=0;MQRankSum=0.744;QD=24.86;ReadPosRankSum=-0.191 GT:AD:DP:GQ:PL 0/1:13,5:18:99:102,0,414 0/0:17,0:17:51.14:0,51,589 0/1:8,9:17:99:237,0,230 1/1:0,38:38:99:1398,114,0 1/1:0,16:16:48.14:587,48,0 1/1:0,20:20:57.16:694,57,0 1/1:0,14:14:39.11:492,39,0 0/1:8,7:15:99:201,0,216 1/1:0,17:17:45.13:529,45,0 1/1:0,14:14:39.11:463,39,0 1/1:0,22:22:63.17:732,63,0 1/1:0,17:17:51.15:600,51,0 1/1:0,13:13:36.10:409,36,0 1/1:0,12:12:30.09:376,30,0 0/1:35,49:84:99:1294,0,888 0/1:12,11:23:99:247,0,320 1/1:0,16:16:36.11:440,36,0 1/1:0,11:11:33.08:384,33,0 1/1:0,38:38:99:1261,111,0 1/1:0,31:31:78.20:905,78,0 1/1:0,34:35:81.22:957,81,0 1/1:0,19:19:51.14:599,51,0 0/1:17,16:33:99:480,0,474 0/1:12,6:19:99:147,0,339 0/1:14,6:20:99:171,0,411 1/1:0,15:15:42.14:556,42,0 1/1:0,12:12:36.06:380,36,0 1/1:0,22:22:63.17:712,63,0 1/1:0,6:6:15.04:182,15,0 1/1:0,12:12:33.09:375,33,0 1/1:0,19:20:51.14:594,51,0 1/1:0,41:41:87.25:1069,87,0 1/1:0,20:20:48.14:564,48,0 1/1:0,14:14:36.09:417,36,0 1/1:0,23:23:60.16:694,60,0 1/1:0,19:19:42.11:523,42,0 0/1:21,14:35:99:336,0,562 1/1:0,12:12:30.07:331,30,0 0/0:16,0:16:42.12:0,42,511 1/1:0,14:14:39.11:446,39,0 0/1:14,3:17:66.75:67,0,366 1/1:0,15:15:33.09:402,33,0 11 1158092 . C G 372.48 . AC=3;AF=0.036;AN=84;BaseQRankSum=-3.742;DP=809;Dels=0.00;FS=1.982;HRun=0;HaplotypeScore=0.3936;InbreedingCoeff=-0.0386;MQ=58.35;MQ0=0;MQRankSum=1.269;QD=10.07;ReadPosRankSum=1.683 GT:AD:DP:GQ:PL 0/0:15,0:15:42.13:0,42,534 0/0:11,0:11:33.09:0,33,403 0/0:14,0:14:36.11:0,36,460 0/0:33,0:33:96.31:0,96,1272 0/0:17,0:17:51.16:0,51,672 0/0:18,0:18:51.16:0,51,679 0/0:17,0:17:45.14:0,45,583 0/0:18,0:18:45.15:0,45,601 0/0:12,0:12:36.11:0,36,446 0/0:12,0:12:30.10:0,30,393 0/0:20,0:20:57.17:0,57,716 0/0:18,0:18:51.16:0,51,646 0/0:8,0:8:24.08:0,24,308 0/0:11,0:11:27.08:0,27,350 0/0:75,0:75:99:0,193,2445 0/0:21,0:21:54.17:0,54,699 0/0:16,0:16:42.13:0,42,533 0/1:3,4:7:58.32:121,0,58 0/0:32,0:32:87.26:0,87,1075 0/0:33,0:33:81.26:0,81,1047 0/0:30,0:30:87.24:0,87,1067 0/0:20,0:20:51.16:0,51,647 0/0:34,0:34:96.31:0,96,1291 0/0:23,0:23:57.17:0,57,756 0/0:21,0:21:60.20:0,60,807 0/0:12,0:12:33.11:0,33,445 0/0:12,0:12:33.10:0,33,413 0/0:16,0:16:45.13:0,45,546 0/0:3,0:3:9.03:0,9,108 0/0:16,0:16:42.13:0,42,528 0/0:18,0:18:48.14:0,48,606 0/0:36,0:36:90.29:0,90,1170 0/0:16,0:16:42.13:0,42,531 0/1:7,7:14:99:196,0,164 0/1:10,6:16:99:131,0,335 0/0:19,0:19:45.15:0,45,588 0/0:29,0:30:75.22:0,75,934 0/0:11,0:11:30.09:0,30,371 0/0:11,0:11:30.09:0,30,373 0/0:16,0:16:39.12:0,39,498 0/0:13,0:13:36.11:0,36,455 0/0:13,0:14:36.11:0,36,456 11 1162017 . C T 745.99 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.506;DP=1818;Dels=0.00;FS=0.690;HRun=1;HaplotypeScore=1.6548;InbreedingCoeff=-0.0244;MQ=58.74;MQ0=0;MQRankSum=0.227;QD=12.03;ReadPosRankSum=-0.185 GT:AD:DP:GQ:PL 0/0:32,0:32:93.25:0,93,1070 0/0:38,0:38:99:0,99,1159 0/0:33,0:33:87.25:0,87,1025 0/0:62,0:62:99:0,162,1998 0/0:52,0:52:99:0,147,1782 0/0:44,0:44:99:0,111,1368 0/0:32,0:32:90.27:0,90,1114 0/0:46,0:46:99:0,120,1480 0/0:34,0:34:90.26:0,90,1082 0/0:35,0:35:96.26:0,96,1113 0/0:28,0:28:78.19:0,78,862 0/1:18,14:32:99:395,0,513 0/1:15,15:30:99:414,0,369 0/0:31,0:31:90.25:0,90,1047 0/0:114,0:116:99:0,304,3582 0/0:38,0:38:99:0,102,1212 0/0:41,0:41:99:0,111,1328 0/0:32,0:32:93.25:0,93,1067 0/0:80,0:80:99:0,213,2397 0/0:82,0:82:99:0,217,2537 0/0:72,0:72:99:0,189,2146 0/0:43,0:43:99:0,117,1353 0/0:74,0:75:99:0,205,2594 0/0:38,0:38:99:0,108,1327 0/0:40,0:40:99:0,111,1379 0/0:39,0:39:99:0,108,1320 0/0:27,0:27:81.22:0,81,935 0/0:22,0:22:57.15:0,57,643 0/0:35,0:35:99:0,102,1145 0/0:45,0:45:99:0,117,1432 0/0:21,0:21:63.14:0,63,715 0/0:84,0:84:99:0,223,2590 0/0:42,0:43:99:0,120,1381 0/0:37,0:37:99:0,108,1246 0/0:25,0:25:75.18:0,75,836 0/0:35,0:35:87.23:0,87,1008 0/0:79,0:79:99:0,214,2469 0/0:17,0:17:48.13:0,48,543 0/0:39,1:40:74.31:0,74,1196 0/0:31,0:31:87.22:0,87,976 0/0:26,0:26:66.18:0,66,747 0/0:26,0:26:69.15:0,69,793 11 1216316 . G C 172.05 . AC=11;AF=0.141;AN=78;BaseQRankSum=-1.576;DP=146;Dels=0.00;FS=14.792;HRun=1;HaplotypeScore=2.9884;InbreedingCoeff=-0.2120;MQ=52.64;MQ0=0;MQRankSum=0.643;QD=3.58;ReadPosRankSum=-5.277 GT:AD:DP:GQ:PL 0/1:3,1:4:23.22:23,0,94 0/0:4,0:4:9.02:0,9,103 0/1:1,0:1:1.76:0,3,39 0/0:4,0:4:12.03:0,12,137 0/0:8,0:8:24.07:0,24,304 0/0:2,0:2:6.02:0,6,73 0/0:5,0:5:15.03:0,15,167 0/0:2,0:2:6.01:0,6,60 0/0:2,0:2:6.02:0,6,78 0/0:2,0:2:6.02:0,6,73 0/0:4,0:4:12.04:0,12,149 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.01:0,9,97 ./. 0/1:7,1:8:16.75:17,0,190 0/0:4,0:4:12.03:0,12,142 0/0:3,0:3:9.03:0,9,108 0/1:2,1:3:25.33:25,0,66 0/0:2,0:2:6.01:0,6,64 0/1:2,1:3:25.32:25,0,68 0/0:3,0:3:9.03:0,9,103 0/0:2,0:2:6.02:0,6,70 0/0:3,0:3:9.03:0,9,108 0/1:5,1:6:18.92:19,0,180 0/1:4,1:5:24.96:25,0,133 0/1:1,2:3:30.29:66,0,30 0/0:2,0:2:6.01:0,6,62 0/0:2,0:2:6.01:0,6,63 0/0:6,0:6:15.03:0,15,174 ./. 0/0:3,0:3:9:0,9,100 0/0:5,0:5:12.04:0,12,146 0/1:5,2:7:51.19:51,0,170 0/0:3,0:3:9.03:0,9,111 ./. 0/0:5,0:5:12.04:0,12,147 0/0:4,0:4:9.03:0,9,101 0/1:4,1:5:24.94:25,0,97 0/0:4,0:4:12.03:0,12,137 0/0:5,0:5:12.03:0,12,142 0/0:4,1:5:10.84:0,11,111 0/1:2,1:3:19.62:20,0,62 11 1216316 . G GC 6518.21 . AC=78;AF=1.000;AN=78;DP=173;FS=0.000;HRun=1;HaplotypeScore=19.4492;InbreedingCoeff=-0.0502;MQ=50.68;MQ0=0;QD=37.68 GT:AD:DP:GQ:PL 1/1:1,3:4:12.04:166,12,0 1/1:1,3:3:9.03:135,9,0 1/1:0,1:1:3.01:45,3,0 1/1:1,3:4:9.03:134,9,0 1/1:0,7:7:21.07:301,21,0 1/1:2,1:3:6.02:90,6,0 1/1:1,5:6:18.06:270,18,0 1/1:2,2:4:9.03:135,9,0 1/1:0,2:2:6.02:90,6,0 1/1:0,2:2:6.02:90,6,0 1/1:1,2:3:9.03:123,9,0 1/1:2,1:3:9.03:135,9,0 1/1:0,3:3:9.03:135,9,0 ./. 1/1:5,6:11:33.11:480,33,0 1/1:0,4:4:12.04:180,12,0 1/1:1,3:4:9.03:135,9,0 1/1:1,2:3:9.03:120,9,0 1/1:3,1:4:9.03:135,9,0 1/1:3,2:5:9.03:120,9,0 1/1:0,2:2:6.02:90,6,0 1/1:4,2:6:15.05:224,15,0 1/1:5,2:7:12.04:169,12,0 1/1:2,4:6:15.05:213,15,0 1/1:1,4:5:15.05:216,15,0 1/1:2,1:3:9.03:111,9,0 1/1:0,2:2:3.01:45,3,0 1/1:2,2:4:12.04:179,12,0 1/1:0,6:6:18.06:265,18,0 ./.:.:1:.:0,0,0 1/1:2,2:4:9.03:135,9,0 1/1:0,5:5:12.04:180,12,0 1/1:5,3:8:21.07:284,21,0 1/1:0,3:3:9.03:135,9,0 ./. 1/1:2,2:5:15.04:192,15,0 1/1:1,3:4:9.03:134,9,0 1/1:1,4:5:15.04:195,15,0 1/1:3,2:5:12.04:180,12,0 1/1:2,4:6:18.03:231,18,0 1/1:3,2:5:15.04:207,15,0 1/1:2,2:4:9.01:114,9,0 11 1216318 . T C 62.22 . AC=7;AF=0.088;AN=80;BaseQRankSum=-0.472;DP=175;Dels=0.01;FS=0.000;HRun=1;HaplotypeScore=2.8399;InbreedingCoeff=-0.1432;MQ=50.96;MQ0=0;MQRankSum=0.768;QD=1.64;ReadPosRankSum=-3.416 GT:AD:DP:GQ:PL 0/0:4,0:4:12.04:0,12,143 0/0:4,0:4:9.03:0,9,105 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.03:0,9,103 0/0:6,0:6:18.06:0,18,229 0/0:2,1:3:5.99:0,6,59 0/0:6,0:6:18.04:0,18,207 0/0:5,0:5:15.05:0,15,182 0/0:2,0:2:6.02:0,6,74 0/0:2,0:2:6.02:0,6,71 0/1:2,1:3:28.77:29,0,65 0/0:3,0:3:9.03:0,9,103 0/0:3,0:3:9.03:0,9,103 ./. 0/0:10,0:10:27.08:0,27,328 0/0:4,0:4:12.04:0,12,145 0/0:4,0:4:12.04:0,12,142 0/0:3,0:3:9.03:0,9,105 0/1:3,1:4:11.67:12,0,88 0/0:5,0:5:15.03:0,15,167 0/0:2,0:2:6.02:0,6,67 0/0:7,0:7:21.05:0,21,223 0/1:6,1:7:15.38:15,0,156 0/0:6,1:7:18.06:0,18,228 0/0:5,0:5:15.05:0,15,182 0/0:3,0:3:9.03:0,9,112 0/0:1,0:1:3.01:0,3,33 0/0:5,0:5:15.01:0,15,160 0/0:6,0:6:18.05:0,18,216 0/0:2,0:2:6.02:0,6,72 0/0:3,1:4:9.03:0,9,109 0/0:5,0:5:12.04:0,12,147 0/1:6,1:7:15.91:16,0,200 0/0:3,0:3:9.03:0,9,109 ./. 0/1:4,2:6:54.21:54,0,116 0/0:4,0:4:12.03:0,12,133 0/0:5,0:5:12.04:0,12,144 0/1:4,1:5:14.58:15,0,122 0/0:6,0:6:18.05:0,18,201 0/1:3,2:5:27.13:27,0,51 0/0:4,0:4:12.04:0,12,144 11 1216333 . TA T 7254.50 . AC=78;AF=1.000;AN=78;DP=192;FS=0.000;HRun=1;HaplotypeScore=17.0916;InbreedingCoeff=-0.0470;MQ=53.78;MQ0=0;QD=37.78 GT:AD:DP:GQ:PL 1/1:0,3:3:9.02:109,9,0 1/1:0,4:3:6.02:84,6,0 ./. 1/1:0,5:5:9.03:126,9,0 1/1:0,5:5:15.05:210,15,0 1/1:0,4:4:12.04:167,12,0 1/1:0,1:1:3.01:42,3,0 1/1:0,9:9:27.09:378,27,0 1/1:0,1:1:3.01:42,3,0 ./. 1/1:1,4:5:12.04:158,12,0 1/1:0,5:5:15.05:210,15,0 1/1:0,3:3:6.02:84,6,0 1/1:0,2:2:6.02:84,6,0 1/1:1,12:13:33.09:444,33,0 1/1:1,5:6:18.06:241,18,0 1/1:2,4:6:18.06:240,18,0 1/1:0,3:3:9.03:126,9,0 1/1:0,6:6:18.05:239,18,0 1/1:0,10:10:27.09:377,27,0 1/1:0,3:3:9.03:126,9,0 1/1:0,7:7:21.07:294,21,0 1/1:0,10:10:30.09:402,30,0 1/1:2,4:6:18.06:244,18,0 1/1:1,2:3:9.03:120,9,0 1/1:0,3:3:9.03:125,9,0 1/1:0,1:1:3.01:42,3,0 1/1:1,5:6:18.06:240,18,0 ./. 1/1:0,4:4:12.04:168,12,0 1/1:1,6:7:21.07:294,21,0 1/1:0,6:6:15.02:190,15,0 1/1:1,7:8:24.08:324,24,0 1/1:1,1:2:6.02:75,6,0 1/1:0,3:3:9.03:126,9,0 1/1:0,6:6:18.06:238,18,0 1/1:0,5:5:15.04:186,15,0 1/1:3,2:5:9.03:115,9,0 1/1:0,3:3:9.03:126,9,0 1/1:0,5:5:12.04:167,12,0 1/1:0,2:2:6.02:84,6,0 1/1:0,6:6:15.05:209,15,0 11 1216440 . G C 15712.78 . AC=51;AF=0.607;AN=84;BaseQRankSum=16.932;DP=916;Dels=0.00;FS=0.920;HRun=1;HaplotypeScore=1.0110;InbreedingCoeff=-0.1487;MQ=57.19;MQ0=12;MQRankSum=2.480;QD=19.71;ReadPosRankSum=-0.230 GT:AD:DP:GQ:PL 0/1:11,7:18:99:194,0,301 0/0:18,0:18:48.11:0,48,516 0/1:8,9:17:99:286,0,208 0/1:28,22:50:99:725,0,771 1/1:1,35:36:99:1337,102,0 0/1:13,5:18:99:140,0,356 0/0:23,0:23:57.13:0,57,635 0/1:19,17:36:99:500,0,457 1/1:1,13:14:39.13:500,39,0 1/1:0,10:10:30.07:346,30,0 1/1:1,14:15:30.09:375,30,0 0/1:6,7:13:99:210,0,138 0/1:6,7:13:99:226,0,157 0/1:5,10:15:96.36:309,0,96 0/1:31,21:53:99:569,0,722 0/1:10,9:19:99:244,0,234 1/1:1,14:15:39.12:475,39,0 0/0:20,0:20:51.10:0,51,533 0/1:13,15:28:99:447,0,317 0/1:11,19:30:99:599,0,213 0/1:12,19:32:99:482,0,232 1/1:0,19:20:54.16:666,54,0 0/0:44,0:44:99:0,123,1429 0/1:13,7:20:99:230,0,335 0/1:12,17:29:99:549,0,343 1/1:2,15:17:42.13:543,42,0 1/1:0,16:16:45.14:554,45,0 1/1:0,26:26:72.21:888,72,0 1/1:0,12:12:33.10:406,33,0 1/1:0,17:17:48.14:580,48,0 1/1:1,13:14:39.12:486,39,0 0/1:18,13:31:99:369,0,432 0/1:19,7:26:99:178,0,445 0/1:7,5:12:99:155,0,154 0/1:10,8:18:99:219,0,263 0/1:5,9:14:88.98:289,0,89 0/1:19,17:36:99:491,0,472 1/1:0,8:8:18.05:218,18,0 0/0:14,0:14:39.09:0,39,410 1/1:2,16:18:48.12:579,48,0 0/1:6,5:11:99:126,0,169 0/1:12,8:20:99:223,0,292 11 1216491 . G C 23346.44 . 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T C 17489.17 . AC=49;AF=0.583;AN=84;BaseQRankSum=-5.882;DP=1141;Dels=0.00;FS=1.764;HRun=0;HaplotypeScore=0.6712;InbreedingCoeff=0.1508;MQ=58.77;MQ0=0;MQRankSum=-0.596;QD=18.83;ReadPosRankSum=-0.303 GT:AD:DP:GQ:PL 1/1:0,13:13:39.10:430,39,0 1/1:1,28:29:49.85:874,50,0 1/1:0,27:27:72.20:839,72,0 0/1:33,24:57:99:660,0,954 0/0:39,0:39:99:0,105,1292 0/1:16,11:27:99:336,0,438 1/1:0,23:23:63.19:783,63,0 0/1:17,12:29:99:374,0,461 0/0:25,0:25:75.19:0,75,861 0/0:16,1:17:45.14:0,45,544 0/0:21,0:21:54.13:0,54,635 1/1:0,19:19:51.12:585,51,0 1/1:0,17:17:51.09:547,51,0 1/1:1,22:23:28.36:682,28,0 0/1:40,35:77:99:890,0,1010 0/1:17,15:32:99:406,0,497 0/0:21,0:21:63.18:0,63,736 1/1:1,13:14:5.64:361,6,0 0/1:17,23:40:99:618,0,446 0/1:27,20:47:99:529,0,778 0/1:21,30:52:99:848,0,562 0/1:13,12:25:99:273,0,363 1/1:0,25:25:66.21:854,66,0 0/1:12,8:20:99:214,0,378 0/1:23,3:27:37.37:37,0,674 0/0:13,0:13:33.10:0,33,400 0/1:10,7:17:99:193,0,289 0/0:24,1:25:42.53:0,43,783 0/1:11,9:20:99:227,0,276 1/1:0,22:22:63.14:696,63,0 1/1:1,15:16:7.76:411,8,0 0/1:21,18:39:99:437,0,547 1/1:0,35:35:96.26:1106,96,0 1/1:0,22:22:63.15:689,63,0 1/1:1,18:19:14.98:494,15,0 1/1:0,20:20:60.13:631,60,0 0/1:23,23:46:99:596,0,599 0/0:20,0:20:54.16:0,54,661 1/1:0,13:13:36.08:399,36,0 0/0:31,0:31:90.27:0,90,1078 0/1:7,7:14:99:197,0,206 0/1:13,10:23:99:274,0,396 11 1218708 . C T 1143.55 . AC=14;AF=0.171;AN=82;BaseQRankSum=0.239;DP=229;Dels=0.00;FS=2.272;HRun=1;HaplotypeScore=0.3400;InbreedingCoeff=0.1762;MQ=58.01;MQ0=0;MQRankSum=0.001;QD=15.25;ReadPosRankSum=1.357 GT:AD:DP:GQ:PL 0/0:5,0:5:12.02:0,12,140 1/1:0,6:7:18.06:219,18,0 0/1:3,3:6:54.13:86,0,54 0/0:5,0:5:15.05:0,15,195 0/0:6,0:6:15.05:0,15,192 0/0:3,0:3:9.03:0,9,112 0/0:2,0:2:6.01:0,6,65 0/1:1,1:2:30.11:30,0,33 0/0:8,0:8:24.06:0,24,274 0/0:2,0:2:6.01:0,6,59 0/0:11,0:11:30.09:0,30,372 0/0:4,0:4:12.03:0,12,130 0/0:4,0:4:9.03:0,9,120 0/0:9,0:9:24.07:0,24,295 0/1:13,15:28:99:341,0,367 0/1:3,1:4:24.09:24,0,101 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.02:0,9,100 0/0:9,0:9:18.06:0,18,244 0/0:8,0:8:18.05:0,18,221 0/0:5,0:5:12.03:0,12,138 0/0:4,0:4:9.03:0,9,118 0/1:4,2:6:55.05:55,0,126 ./. 0/1:1,1:2:31.78:32,0,34 0/0:6,0:6:18.05:0,18,217 0/0:6,0:6:15.04:0,15,182 0/0:6,0:6:18.04:0,18,205 0/0:2,0:2:6.02:0,6,76 0/0:2,0:2:3.01:0,3,37 0/0:5,0:5:12.03:0,12,142 0/0:3,0:3:9.03:0,9,108 0/1:1,1:2:27.42:27,0,32 0/0:1,0:1:2.99:0,3,23 0/0:10,0:10:27.08:0,27,317 0/0:7,0:7:21.06:0,21,237 0/1:4,3:7:86.33:86,0,122 0/0:2,0:2:6.02:0,6,69 1/1:0,8:8:24.07:292,24,0 0/0:6,0:6:12.04:0,12,147 1/1:0,3:3:9.03:110,9,0 0/0:8,0:9:18.06:0,18,237 11 1220923 . C T 315.44 . AC=8;AF=0.095;AN=84;BaseQRankSum=-0.259;DP=163;Dels=0.00;FS=1.196;HRun=0;HaplotypeScore=0.2830;InbreedingCoeff=0.1200;MQ=57.80;MQ0=0;MQRankSum=0.565;QD=12.13;ReadPosRankSum=-0.122 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,72 0/0:4,0:4:12.03:0,12,134 0/0:6,0:6:15.04:0,15,176 1/1:0,3:3:9.03:105,9,0 0/0:4,0:4:9.03:0,9,117 0/0:3,0:3:9.01:0,9,103 0/0:1,0:1:3.01:0,3,41 0/0:2,0:2:6.02:0,6,76 0/0:4,0:4:12.03:0,12,139 0/0:2,0:2:6.02:0,6,71 0/0:4,0:4:9.03:0,9,103 0/1:3,1:4:23.22:23,0,100 0/1:2,2:4:57.31:59,0,57 0/1:1,1:2:25.54:26,0,26 0/0:11,0:11:30.09:0,30,368 0/0:7,0:7:21.06:0,21,241 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.03:0,9,102 0/0:11,0:11:33.07:0,33,355 0/0:4,0:4:12.02:0,12,133 0/0:6,0:6:18.03:0,18,198 0/0:5,0:5:15.04:0,15,172 0/1:1,4:5:18.39:127,0,18 0/0:2,0:2:6.02:0,6,79 0/0:4,0:4:12.04:0,12,161 0/0:2,0:2:6.02:0,6,76 0/0:4,0:4:12.04:0,12,143 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:3.01:0,3,33 0/0:3,0:3:9.02:0,9,99 0/0:1,0:1:3.01:0,3,32 0/0:5,0:5:15.04:0,15,174 0/0:7,0:7:15.05:0,15,179 0/1:1,2:4:0.97:74,6,0 0/1:3,1:4:23.22:23,0,94 0/0:3,0:3:9.03:0,9,104 0/0:6,0:6:15.04:0,15,166 0/0:2,0:2:6.01:0,6,59 0/0:7,0:7:21.06:0,21,252 0/0:4,0:4:12.03:0,12,136 0/0:1,0:1:3.01:0,3,30 0/0:3,0:3:9.02:0,9,102 11 1220967 . C T 2977.89 . AC=48;AF=0.571;AN=84;BaseQRankSum=1.814;DP=195;Dels=0.00;FS=3.771;HRun=0;HaplotypeScore=0.1945;InbreedingCoeff=0.0072;MQ=57.19;MQ0=0;MQRankSum=1.016;QD=17.94;ReadPosRankSum=-1.480 GT:AD:DP:GQ:PL 0/1:2,1:3:30.11:30,0,39 0/0:2,0:2:6.02:0,6,72 0/0:1,0:1:3.01:0,3,36 0/1:3,2:5:10.68:11,0,75 1/1:0,7:7:21.05:236,21,0 0/1:1,1:2:26.48:26,0,34 0/0:2,0:2:6.02:0,6,73 0/1:4,1:5:23.53:24,0,126 1/1:1,4:5:6.02:81,6,0 1/1:0,4:4:12:118,12,0 1/1:0,4:4:12.03:140,12,0 0/1:1,1:2:30.96:32,0,31 0/1:1,3:4:19.52:87,0,20 0/1:5,2:7:53.64:54,0,158 0/1:9,11:20:99:250,0,202 0/1:2,1:3:27.10:27,0,60 1/1:0,1:1:3.01:35,3,0 0/0:3,0:3:6:0,6,61 0/1:3,8:11:72.32:223,0,72 0/1:4,2:7:55.39:55,0,74 0/1:3,2:5:61.89:62,0,66 1/1:0,9:9:24.07:297,24,0 0/0:5,0:5:15.02:0,15,154 0/0:5,1:6:12.01:0,12,130 0/1:2,1:3:25.32:25,0,70 1/1:0,3:3:9.03:111,9,0 1/1:0,5:5:15.05:182,15,0 1/1:0,1:1:3.01:35,3,0 1/1:0,1:1:3.01:37,3,0 1/1:0,4:4:12.04:143,12,0 1/1:0,5:5:15.04:179,15,0 0/1:2,3:6:60.51:98,0,61 0/1:6,4:10:82.09:82,0,153 0/0:3,0:3:9.02:0,9,103 1/1:1,5:6:12.04:144,12,0 0/1:1,3:4:19.52:96,0,20 0/0:1,0:1:3.01:0,3,37 1/1:0,5:5:15.04:167,15,0 0/0:6,0:6:15.03:0,15,163 1/1:0,2:2:6.01:67,6,0 0/1:1,0:1:1.76:0,3,32 0/1:5,1:6:24.96:25,0,71 11 1246941 . A G 2057.46 . AC=17;AF=0.202;AN=84;BaseQRankSum=3.713;DP=543;Dels=0.00;FS=4.922;HRun=3;HaplotypeScore=0.2241;InbreedingCoeff=-0.1109;MQ=58.36;MQ0=0;MQRankSum=-0.100;QD=13.19;ReadPosRankSum=-0.068 GT:AD:DP:GQ:PL 0/1:8,7:15:99:124,0,238 0/1:4,3:7:93.65:94,0,128 0/0:6,0:6:15.05:0,15,194 0/0:25,0:25:66.20:0,66,823 0/0:18,0:18:45.14:0,45,586 0/0:19,0:19:48.15:0,48,628 0/0:13,0:13:27.09:0,27,367 0/0:21,0:21:51.16:0,51,661 0/1:7,5:12:99:150,0,221 0/1:5,4:9:99:121,0,132 0/1:3,7:10:77.18:229,0,77 0/0:11,0:11:30.09:0,30,373 0/1:1,2:3:28.77:66,0,29 0/0:7,0:7:21.07:0,21,259 0/0:44,0:44:99:0,105,1292 0/0:11,0:11:33.10:0,33,393 0/0:10,0:10:27.09:0,27,346 0/1:3,1:4:27.28:27,0,96 0/0:11,0:11:33.10:0,33,407 0/0:29,0:29:66.16:0,66,809 0/0:17,0:17:42.13:0,42,534 0/0:14,0:14:39.12:0,39,485 0/0:23,0:23:57.18:0,57,745 0/0:11,0:11:21.07:0,21,288 1/1:0,10:11:24.08:329,24,0 0/0:7,0:7:21.06:0,21,252 0/0:10,0:10:24.08:0,24,312 0/0:7,0:7:15.05:0,15,201 0/0:6,0:7:18.06:0,18,227 0/1:3,8:11:81.28:197,0,81 0/1:11,3:14:55.50:55,0,361 0/0:19,0:19:45.14:0,45,571 0/1:6,8:14:99:206,0,186 0/1:5,6:11:99:198,0,147 0/1:8,5:13:99:147,0,229 0/1:5,2:7:53.71:54,0,153 0/0:21,0:21:54.17:0,54,670 0/0:11,0:11:30.09:0,30,363 0/1:3,6:9:88.46:164,0,88 0/0:5,0:6:12.04:0,12,153 0/1:3,3:6:67.51:68,0,98 0/0:9,0:9:24.07:0,24,292 11 1247458 . C T 149.16 . AC=5;AF=0.064;AN=78;BaseQRankSum=0.208;DP=136;Dels=0.00;FS=1.600;HRun=0;HaplotypeScore=0.1155;InbreedingCoeff=-0.1445;MQ=57.64;MQ0=0;MQRankSum=0.780;QD=9.32;ReadPosRankSum=0.063 GT:AD:DP:GQ:PL 0/1:1,1:2:25.53:32,0,26 0/1:1,1:2:27.42:27,0,28 ./. 0/0:4,0:4:9.03:0,9,118 0/0:3,0:3:9.03:0,9,116 0/0:3,0:3:6.02:0,6,87 0/0:2,0:2:6.01:0,6,56 0/0:2,0:2:6.02:0,6,81 0/0:3,0:3:6.02:0,6,77 0/0:3,0:3:9.03:0,9,113 0/1:3,1:4:21.40:21,0,92 0/0:4,0:4:12.03:0,12,135 0/0:3,0:3:9.02:0,9,106 0/0:3,0:3:9.03:0,9,105 0/0:14,0:14:33.06:0,33,352 ./. 0/0:7,0:7:21.06:0,21,255 0/0:2,0:2:6:0,6,52 0/0:3,0:3:6.02:0,6,69 0/0:7,0:7:18.05:0,18,210 0/0:3,0:4:9.02:0,9,97 0/0:4,0:4:9.02:0,9,108 0/0:3,0:3:6.02:0,6,80 0/0:2,0:2:6.02:0,6,79 0/0:1,0:1:3:0,3,25 0/0:1,0:1:3.01:0,3,32 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.03:0,9,107 0/0:2,0:2:3.01:0,3,45 ./. 0/0:4,0:4:12.04:0,12,146 0/0:6,0:6:15.04:0,15,190 0/1:2,3:5:32.62:100,0,33 0/0:4,0:4:12.03:0,12,138 0/0:3,0:3:9.03:0,9,110 0/0:3,0:3:9.03:0,9,106 0/0:6,0:6:15.04:0,15,190 0/0:2,0:2:6.02:0,6,76 0/0:3,0:3:9.03:0,9,107 0/0:1,0:1:3.01:0,3,33 0/1:1,2:3:23.47:60,0,23 0/0:4,0:4:12.04:0,12,156 11 1250488 . C T 3660.48 . AC=32;AF=0.381;AN=84;BaseQRankSum=3.422;DP=345;Dels=0.00;FS=2.538;HRun=0;HaplotypeScore=0.2804;InbreedingCoeff=-0.1461;MQ=58.58;MQ0=0;MQRankSum=0.774;QD=16.34;ReadPosRankSum=0.517 GT:AD:DP:GQ:PL 0/1:4,5:9:99:126,0,111 0/1:3,1:4:26.24:26,0,44 0/0:6,0:6:15.04:0,15,178 0/0:12,0:12:33.10:0,33,412 0/1:6,3:9:85.42:85,0,192 1/1:0,5:5:15.02:171,15,0 0/1:1,1:2:30.11:33,0,30 0/0:7,0:7:18.06:0,18,226 0/0:7,0:7:9.03:0,9,112 0/0:2,0:2:6.01:0,6,63 1/1:0,4:4:9.03:108,9,0 0/1:2,1:3:24.41:24,0,58 0/1:1,2:3:28.77:62,0,29 0/0:8,0:8:18.03:0,18,219 0/1:11,19:30:99:521,0,277 0/1:3,2:5:54.52:55,0,94 0/1:5,7:12:98.77:213,0,99 0/0:9,0:9:21.06:0,21,248 0/1:8,4:12:73.17:73,0,232 0/1:6,10:16:99:260,0,111 0/1:8,1:9:12.07:12,0,211 0/0:8,0:8:21.06:0,21,256 0/1:4,2:6:56.28:56,0,104 0/1:6,1:7:20.52:21,0,176 1/1:0,4:4:12.04:147,12,0 0/0:9,0:9:18.05:0,18,234 0/1:4,5:9:99:148,0,106 0/1:1,7:8:10.50:193,0,10 0/0:8,0:8:24.06:0,24,268 0/1:2,1:3:27.95:28,0,63 0/0:6,0:6:15.05:0,15,182 1/1:0,19:19:45.14:566,45,0 0/1:5,3:8:40.08:40,0,134 0/0:2,0:2:6.02:0,6,70 0/1:2,4:6:46.93:122,0,47 0/0:10,0:10:30.08:0,30,331 0/0:18,0:18:48.10:0,48,511 0/1:3,5:8:72.45:156,0,72 0/0:9,0:9:27.08:0,27,315 0/1:6,5:11:99:144,0,126 0/1:3,5:8:57.13:158,0,57 1/1:1,3:4:9.03:112,9,0 11 1253942 . T C 12516.13 . AC=53;AF=0.631;AN=84;BaseQRankSum=-3.519;DP=618;Dels=0.00;FS=0.685;HRun=0;HaplotypeScore=0.3248;InbreedingCoeff=-0.4953;MQ=51.67;MQ0=0;MQRankSum=-6.420;QD=20.35;ReadPosRankSum=-0.128 GT:AD:DP:GQ:PL 0/1:7,13:20:99:347,0,169 0/1:5,8:13:99:220,0,114 0/1:4,9:13:99:221,0,99 0/1:10,8:18:99:180,0,295 0/1:6,16:22:99:415,0,158 1/1:0,10:10:27.08:340,27,0 0/1:5,8:13:99:200,0,154 0/1:7,3:10:65.09:65,0,203 1/1:0,7:7:21.06:249,21,0 0/1:6,9:15:99:268,0,165 1/1:0,9:9:24.06:273,24,0 1/1:1,16:17:10.74:446,11,0 1/1:0,16:16:39.09:437,39,0 0/1:6,10:16:99:279,0,134 0/1:14,29:43:99:707,0,359 0/1:5,12:17:99:323,0,135 0/1:7,7:14:99:179,0,172 0/1:4,3:7:72.54:73,0,124 0/1:7,12:19:99:285,0,135 1/1:0,27:27:60.15:738,60,0 0/1:9,24:33:99:631,0,180 0/1:5,7:12:99:178,0,107 0/1:6,11:17:99:331,0,143 0/1:7,4:11:99:120,0,224 1/1:0,14:14:42.11:485,42,0 0/0:3,0:3:9.03:0,9,105 1/1:0,15:15:45.11:489,45,0 1/1:0,12:12:33.08:357,33,0 0/1:2,4:6:53.33:125,0,53 0/1:5,8:13:99:195,0,134 0/1:4,6:10:87.71:167,0,88 1/1:0,28:28:75.21:891,75,0 0/1:4,16:20:84.96:443,0,85 0/1:3,5:8:74.84:140,0,75 1/1:0,11:11:33.10:390,33,0 0/1:7,5:12:99:121,0,179 0/1:7,3:10:71.88:72,0,212 0/1:4,4:8:88.18:106,0,88 0/1:5,8:13:99:177,0,117 1/1:1,16:17:12.01:490,12,0 0/1:2,5:7:52.05:153,0,52 0/1:4,8:12:99:212,0,110 11 1253969 . A G 2376.94 . AC=39;AF=0.464;AN=84;BaseQRankSum=13.508;DP=545;Dels=0.00;FS=45.441;HRun=0;HaplotypeScore=0.4111;InbreedingCoeff=-0.8376;MQ=54.18;MQ0=0;MQRankSum=-12.775;QD=4.62;ReadPosRankSum=-4.702 GT:AD:DP:GQ:PL 0/1:13,5:18:99:122,0,364 0/1:11,3:14:60.39:60,0,287 0/1:4,1:5:18.40:18,0,115 0/1:17,3:20:51.16:51,0,510 0/0:20,1:21:17.72:0,18,562 0/1:12,3:15:50.57:51,0,350 0/0:8,1:9:5.39:0,5,268 0/1:8,1:9:1.98:0,2,238 0/1:5,1:6:18.39:18,0,128 0/1:8,2:10:43.05:43,0,225 0/1:5,4:9:96.25:96,0,143 0/1:6,7:13:99:192,0,168 0/1:9,4:13:99:100,0,268 0/1:8,3:11:62.59:63,0,229 0/1:28,9:37:99:188,0,738 0/1:10,6:16:99:148,0,270 0/1:13,2:15:9.22:9,0,353 0/1:6,2:8:35.18:35,0,178 0/1:12,3:15:64.69:65,0,359 0/1:13,6:19:99:110,0,384 0/1:18,6:25:99:132,0,548 0/1:12,4:16:80.58:81,0,333 0/1:9,3:12:64.20:64,0,270 0/1:11,2:13:35.93:36,0,314 0/1:10,2:12:22.17:22,0,316 0/0:1,0:1:3.01:0,3,36 0/1:6,4:10:99:103,0,158 0/1:10,2:12:26.96:27,0,309 0/1:4,1:5:21.93:22,0,125 0/1:9,2:12:25.06:25,0,238 0/1:6,2:8:31.06:31,0,183 0/1:18,5:23:99:117,0,523 0/1:13,5:18:99:124,0,350 0/1:9,3:12:59.28:59,0,271 0/1:8,1:9:5.42:5,0,249 0/1:10,1:11:6.35:6,0,260 0/1:9,2:11:24.23:24,0,230 0/1:6,1:7:12.37:12,0,188 0/1:5,1:6:15.38:15,0,151 0/1:10,5:15:99:112,0,306 0/1:9,5:14:99:108,0,211 0/1:7,3:10:43.16:43,0,194 11 1253976 . A G 1227.84 . AC=30;AF=0.357;AN=84;BaseQRankSum=-0.105;DP=516;Dels=0.00;FS=42.467;HRun=1;HaplotypeScore=0.5124;InbreedingCoeff=-0.5460;MQ=55.29;MQ0=0;MQRankSum=-11.431;QD=3.02;ReadPosRankSum=-2.136 GT:AD:DP:GQ:PL 0/1:13,3:16:63.31:63,0,378 0/1:9,2:11:35.98:36,0,238 0/0:5,0:5:15.04:0,15,172 0/0:20,0:20:54.17:0,54,683 0/0:21,1:22:17.73:0,18,586 0/1:13,3:16:50.55:51,0,388 0/1:8,2:10:13.29:13,0,265 0/0:8,1:9:2.35:0,2,227 0/0:5,0:5:12.03:0,12,148 0/0:7,0:7:21.06:0,21,252 0/1:7,3:10:50.85:51,0,226 0/1:6,5:11:99:116,0,188 0/1:9,1:10:3.34:3,0,307 0/1:8,2:10:34.02:34,0,243 0/1:27,5:32:33.94:34,0,786 0/1:11,4:15:88.01:88,0,300 0/1:12,2:14:9.19:9,0,383 0/1:5,2:7:38.19:38,0,170 0/1:14,2:16:2.76:0,1,393 0/1:15,4:19:64.66:65,0,467 0/1:21,6:27:99:132,0,552 0/0:12,1:13:2.67:0,3,365 0/1:10,2:12:30.76:31,0,340 0/1:11,2:14:39.64:40,0,316 0/1:9,2:11:28.18:28,0,282 0/0:1,0:1:3.01:0,3,37 0/1:6,2:8:45:45,0,137 0/0:9,0:9:27.08:0,27,321 0/0:3,0:3:9.03:0,9,107 0/1:14,2:16:19.04:19,0,339 0/1:6,1:7:0.63:1,0,201 0/1:21,6:27:99:128,0,584 0/1:12,4:16:89.88:90,0,331 0/1:7,3:10:57.82:58,0,218 0/1:8,1:9:9.89:10,0,271 0/1:5,2:7:45.81:46,0,158 0/1:10,2:12:21.22:21,0,275 0/0:7,0:7:21.06:0,21,249 0/1:6,1:7:12.37:12,0,195 0/1:10,2:12:28.37:28,0,332 0/1:9,5:14:99:105,0,263 0/0:8,1:9:18.05:0,18,234 11 1253980 . A G 769.18 . AC=22;AF=0.262;AN=84;BaseQRankSum=6.495;DP=489;Dels=0.00;FS=41.927;HRun=1;HaplotypeScore=0.4669;InbreedingCoeff=-0.3757;MQ=56.14;MQ0=0;MQRankSum=-9.906;QD=2.84;ReadPosRankSum=0.326 GT:AD:DP:GQ:PL 0/1:13,3:16:63.32:63,0,359 0/1:8,2:10:35.98:36,0,232 0/0:5,0:5:15.04:0,15,167 0/0:20,0:20:51.15:0,51,620 0/0:21,1:22:20.73:0,21,587 0/1:12,3:15:49.62:50,0,365 0/0:8,1:9:5.39:0,5,274 0/0:7,0:7:18.05:0,18,211 0/0:5,1:6:12.04:0,12,150 0/0:10,0:10:27.07:0,27,323 0/1:6,2:8:12.37:12,0,189 0/1:7,4:11:86.69:87,0,213 0/0:9,0:9:27.08:0,27,323 0/1:9,2:11:6.35:6,0,264 0/0:25,2:27:6.12:0,6,656 0/1:8,4:12:94.03:94,0,231 0/0:12,1:13:17.42:0,17,394 0/1:5,2:7:38.19:38,0,153 0/1:12,2:14:41.04:41,0,331 0/1:14,3:17:33.81:34,0,421 0/1:21,5:26:89.37:89,0,594 0/0:11,1:12:2.84:0,0,321 0/0:11,1:12:2.68:0,3,364 0/0:14,0:14:33.09:0,33,398 0/1:8,2:10:33.13:33,0,239 0/0:1,0:1:3.01:0,3,37 0/1:6,1:7:18.39:18,0,140 0/0:8,0:8:24.07:0,24,281 0/0:4,0:4:12.04:0,12,142 0/1:13,1:14:3.34:3,0,309 0/1:6,1:7:0.63:1,0,187 0/1:22,4:26:74.74:75,0,621 0/1:12,4:16:92.14:92,0,301 0/1:7,1:8:5.55:6,0,230 0/1:8,1:9:11.49:11,0,264 0/1:6,2:8:42.80:43,0,192 0/0:12,2:14:0.47:0,0,298 0/0:7,0:7:21.06:0,21,240 0/1:6,1:7:12.37:12,0,192 0/0:10,0:10:27.08:0,27,330 0/1:8,4:12:81.28:81,0,219 0/0:8,0:8:18.06:0,18,231 11 1255773 . C T 3139.22 . AC=32;AF=0.381;AN=84;BaseQRankSum=-0.085;DP=311;Dels=0.00;FS=1.422;HRun=0;HaplotypeScore=0.3987;InbreedingCoeff=-0.1381;MQ=58.85;MQ0=0;MQRankSum=-0.151;QD=15.02;ReadPosRankSum=-0.870 GT:AD:DP:GQ:PL 0/0:5,0:5:12.04:0,12,152 0/1:7,2:9:38.82:39,0,224 0/0:10,0:10:24.07:0,24,294 0/0:10,0:10:27.08:0,27,340 0/1:4,4:8:51.45:51,0,117 0/1:4,3:7:90.22:90,0,104 0/0:7,0:7:21.06:0,21,262 0/1:4,2:6:58.88:59,0,102 0/1:2,7:9:33.04:224,0,33 0/0:5,0:5:15.03:0,15,175 1/1:0,4:4:12.03:135,12,0 0/0:2,0:2:6.01:0,6,60 0/1:1,2:3:24.41:66,0,24 0/0:10,0:10:27.07:0,27,309 0/1:14,21:35:99:584,0,313 0/1:4,3:7:66.55:67,0,106 0/1:3,2:5:54.56:55,0,96 0/0:5,0:5:12.04:0,12,153 0/1:6,1:7:14.19:14,0,192 0/1:6,7:13:99:179,0,129 0/1:1,4:5:23.53:125,0,24 0/1:3,1:4:22.32:22,0,92 0/1:7,4:11:99:113,0,189 0/1:3,4:7:93.56:94,0,98 1/1:0,11:11:30.08:347,30,0 0/0:5,0:5:9.03:0,9,127 0/1:3,1:4:24.12:24,0,80 1/1:0,8:8:24.07:283,24,0 0/0:7,0:7:18.05:0,18,210 0/1:4,3:7:87.24:87,0,126 0/0:6,0:6:15.04:0,15,181 1/1:0,8:8:18.06:235,18,0 0/1:4,2:6:50.64:51,0,116 0/0:4,0:4:12.03:0,12,129 0/1:2,1:3:27.10:27,0,63 0/0:7,0:7:15.05:0,15,196 0/0:11,0:11:30.06:0,30,335 0/1:5,2:7:55.08:55,0,99 0/0:8,0:8:24.07:0,24,269 1/1:0,6:6:15.05:191,15,0 0/1:2,2:4:35.74:36,0,60 0/1:2,3:5:51.82:94,0,52 11 1260193 . T C 15.71 . AC=5;AF=0.060;AN=84;BaseQRankSum=-3.477;DP=183;Dels=0.00;FS=2.551;HRun=1;HaplotypeScore=0.1863;InbreedingCoeff=-0.1393;MQ=56.02;MQ0=0;MQRankSum=-3.927;QD=0.79;ReadPosRankSum=2.796 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,69 0/0:3,0:3:9.03:0,9,113 0/1:2,1:3:14.67:15,0,63 0/0:3,0:3:6.02:0,6,72 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.03:0,9,116 0/0:2,0:2:6.02:0,6,69 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6.02:0,6,72 0/0:4,0:4:6.02:0,6,74 0/0:3,0:3:9.03:0,9,110 0/1:2,1:3:23.47:23,0,64 0/0:2,0:2:3.01:0,3,38 0/0:1,0:1:3.01:0,3,37 0/0:11,0:11:24.07:0,24,279 0/0:6,0:6:12.04:0,12,148 0/0:8,0:8:12.03:0,12,137 0/0:3,0:3:9.03:0,9,105 0/1:4,1:6:14.60:15,0,109 0/0:14,0:14:39.12:0,39,481 0/0:6,0:6:12.01:0,12,136 0/1:2,1:3:15.67:16,0,27 0/0:2,0:2:3.01:0,3,37 0/0:1,0:1:3.01:0,3,37 0/0:5,0:5:15.05:0,15,184 0/0:1,0:1:3.01:0,3,39 0/0:4,0:4:12.03:0,12,140 0/0:4,0:4:9.03:0,9,108 0/0:4,0:4:6.02:0,6,75 0/1:3,2:5:36.28:36,0,84 0/0:3,0:3:6.02:0,6,70 0/0:4,0:4:9.03:0,9,112 0/0:10,0:10:21.06:0,21,249 0/0:2,0:2:6.02:0,6,74 0/0:6,0:6:15.05:0,15,180 0/0:5,0:5:12.04:0,12,142 0/0:12,0:12:27.06:0,27,316 0/0:4,0:4:9.03:0,9,113 0/0:2,0:2:6.02:0,6,71 0/0:3,0:3:9.03:0,9,111 0/0:9,0:9:21.06:0,21,253 0/0:7,0:7:21.03:0,21,225 11 1260251 . A C 79.31 . AC=8;AF=0.100;AN=80;BaseQRankSum=-6.683;DP=199;Dels=0.00;FS=54.815;HRun=2;HaplotypeScore=0.1526;InbreedingCoeff=-0.1795;MQ=57.53;MQ0=0;MQRankSum=0.564;QD=1.44;ReadPosRankSum=-4.731 GT:AD:DP:GQ:PL 0/0:5,2:7:15.04:0,15,179 0/0:2,0:2:6.02:0,6,75 0/0:2,2:4:6.02:0,6,72 0/0:6,1:7:18.05:0,18,211 0/0:2,0:2:6.02:0,6,73 0/1:1,3:4:23.61:27,0,24 0/0:1,2:3:3.01:0,3,36 0/0:1,0:1:3.01:0,3,35 0/0:2,1:3:6.02:0,6,74 0/0:1,2:3:3.01:0,3,36 0/1:4,3:7:12.63:13,0,124 0/1:1,2:3:23.61:24,0,28 0/0:2,1:3:6.02:0,6,68 0/0:2,1:3:6.02:0,6,69 0/1:8,9:18:40.93:41,0,204 0/0:2,5:7:6.02:0,6,69 0/0:3,3:6:6.02:0,6,73 0/0:2,1:3:6.01:0,6,61 0/0:4,1:5:9.02:0,9,102 0/0:9,0:10:27.05:0,27,300 0/0:6,2:8:12.04:0,12,149 ./. 0/0:3,2:5:9.03:0,9,110 0/0:2,0:2:6.01:0,6,66 ./. 0/0:2,0:2:6.02:0,6,77 0/0:4,2:6:12.03:0,12,136 0/1:1,1:2:1.76:0,3,29 0/0:3,1:4:6.01:0,6,63 0/0:2,3:5:6.02:0,6,71 0/0:4,0:4:9.03:0,9,108 0/0:3,0:3:9.03:0,9,110 0/0:1,1:2:3.01:0,3,37 0/0:6,0:6:18.06:0,18,225 0/0:4,1:5:12.04:0,12,142 0/0:5,2:7:12.01:0,12,115 0/0:5,2:7:12.03:0,12,140 0/0:4,1:5:12.03:0,12,131 0/1:6,6:12:41.86:42,0,154 0/0:2,1:3:6.02:0,6,70 0/1:2,2:4:17.66:18,0,62 0/1:3,2:5:19.51:20,0,99 11 1275988 . T C 317.92 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.893;DP=1608;Dels=0.00;FS=0.990;HRun=1;HaplotypeScore=1.2739;InbreedingCoeff=-0.0120;MQ=58.88;MQ0=0;MQRankSum=-0.309;QD=13.25;ReadPosRankSum=-1.205 GT:AD:DP:GQ:PL 0/0:32,1:33:43.45:0,43,937 0/0:41,0:41:99:0,117,1432 0/0:30,0:30:81.22:0,81,972 0/0:54,1:56:99:0,147,1738 0/0:61,0:61:99:0,162,1943 0/0:31,0:31:81.25:0,81,1032 0/0:34,0:34:81.25:0,81,1032 0/0:42,0:42:99:0,108,1320 0/0:35,0:35:96.28:0,96,1164 0/0:19,0:19:51.14:0,51,600 0/0:19,0:19:57.15:0,57,658 0/0:21,0:21:63.19:0,63,772 0/1:11,13:24:99:364,0,234 0/0:29,0:29:84.23:0,84,1006 0/0:97,1:99:99:0,241,2948 0/0:26,0:26:78.20:0,78,906 0/0:25,0:26:69.19:0,69,821 0/0:36,0:36:96.29:0,96,1175 0/0:51,0:51:99:0,135,1591 0/0:63,1:64:99:0,165,2073 0/0:72,0:72:99:0,174,2136 0/0:39,1:40:99:0,99,1182 0/0:61,0:61:99:0,162,1987 0/0:39,0:39:99:0,105,1252 0/0:41,0:41:99:0,114,1416 0/0:29,0:29:78.21:0,78,945 0/0:28,0:28:84.25:0,84,1009 0/0:27,0:27:75.22:0,75,900 0/0:28,0:28:75.23:0,75,921 0/0:27,0:27:78.22:0,78,929 0/0:31,0:31:90.24:0,90,1075 0/0:51,0:51:99:0,135,1672 0/0:50,0:50:99:0,129,1604 0/0:24,0:25:66.20:0,66,795 0/0:33,0:33:84.25:0,84,1016 0/0:31,0:33:87.22:0,87,1018 0/0:43,1:45:99:0,114,1358 0/0:33,0:33:93.29:0,93,1141 0/0:35,1:37:81.25:0,81,1019 0/0:27,0:27:75.21:0,75,889 0/0:29,1:30:54.59:0,55,930 0/0:43,1:44:99:0,114,1399 11 1276467 . A C 58.11 . AC=10;AF=0.125;AN=80;BaseQRankSum=-6.270;DP=158;Dels=0.00;FS=61.407;HRun=2;HaplotypeScore=0.2980;InbreedingCoeff=-0.1142;MQ=56.55;MQ0=0;MQRankSum=-1.829;QD=1.42;ReadPosRankSum=-3.913 GT:AD:DP:GQ:PL 0/0:2,3:5:3.89:0,4,35 0/0:2,0:2:6.02:0,6,71 0/1:2,1:3:25.53:26,0,31 0/0:1,1:2:2.88:0,3,15 0/1:6,3:9:9.53:10,0,192 0/0:1,2:3:3.01:0,3,39 0/0:3,0:3:9.03:0,9,106 0/0:2,1:3:3.01:0,3,33 0/0:2,1:3:6.02:0,6,65 0/0:5,0:5:15.02:0,15,169 ./. 0/1:2,3:5:15.67:16,0,30 0/0:3,0:3:9.01:0,9,98 0/0:5,1:6:15.04:0,15,173 0/0:6,1:7:18.06:0,18,217 0/0:2,0:2:6.02:0,6,68 0/0:3,0:3:9.03:0,9,107 0/0:1,1:2:3.01:0,3,37 0/1:2,2:4:15.67:16,0,69 0/1:4,1:5:19.62:20,0,62 0/0:8,2:10:24.07:0,24,279 0/0:2,0:2:6.02:0,6,71 0/0:3,1:4:6.01:0,6,62 0/0:2,2:4:6.02:0,6,73 ./. 0/0:2,0:2:6.02:0,6,72 0/0:5,0:5:15.04:0,15,176 0/1:2,2:4:21.57:22,0,54 0/0:1,0:1:3.01:0,3,38 0/0:5,0:5:12.01:0,12,141 0/0:1,1:2:3.01:0,3,38 0/0:9,3:12:19.31:0,19,228 0/0:2,0:2:6:0,6,57 0/0:1,0:1:3.01:0,3,32 1/1:1,2:3:3.01:36,3,0 0/0:3,0:3:9.02:0,9,98 0/1:5,1:6:10.60:11,0,155 0/0:2,0:2:6.02:0,6,74 0/0:3,0:3:9.03:0,9,111 0/1:1,1:2:19.67:20,0,29 0/0:5,0:5:12.03:0,12,140 0/0:2,0:2:6.01:0,6,67 11 1278796 . G A 37.85 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.086;DP=1187;Dels=0.00;FS=4.676;HRun=0;HaplotypeScore=0.9239;InbreedingCoeff=-0.0121;MQ=58.31;MQ0=0;MQRankSum=0.396;QD=1.89;ReadPosRankSum=0.369 GT:AD:DP:GQ:PL 0/0:19,0:19:48.13:0,48,553 0/0:18,0:18:45.13:0,45,531 0/0:15,0:15:36.10:0,36,423 0/0:49,0:49:99:0,129,1589 0/0:44,0:44:99:0,117,1410 0/0:21,0:21:54.17:0,54,695 0/0:29,0:29:78.24:0,78,1018 0/0:26,0:26:66.18:0,66,806 0/0:25,0:25:66.17:0,66,766 0/0:23,0:23:63.13:0,63,682 0/0:26,0:26:63.17:0,63,731 0/0:19,0:19:54.10:0,54,577 0/1:16,4:20:84.06:84,0,424 0/0:33,0:33:78.23:0,78,931 0/0:59,0:59:99:0,159,1792 0/0:26,0:26:66.19:0,66,787 0/0:21,0:21:60.12:0,60,673 0/0:15,0:15:33.10:0,33,392 0/0:36,0:36:84.24:0,84,1014 0/0:54,0:54:99:0,138,1628 0/0:36,0:36:90.22:0,90,1035 0/0:30,0:30:75.17:0,75,842 0/0:61,0:61:99:0,156,2031 0/0:28,0:28:60.19:0,60,802 0/0:33,0:36:75.23:0,75,961 0/0:29,0:29:75.21:0,75,922 0/0:14,0:14:33.08:0,33,367 0/0:14,0:15:39.10:0,39,435 0/0:27,0:27:78.20:0,78,875 0/0:20,0:20:57.13:0,57,639 0/0:25,0:25:69.18:0,69,812 0/0:51,0:51:99:0,135,1562 0/0:40,0:40:99:0,102,1211 0/0:20,0:20:54.15:0,54,639 0/0:13,0:13:39.10:0,39,431 0/0:23,0:23:63.16:0,63,714 0/0:38,0:38:90.24:0,90,1064 0/0:30,0:30:78.19:0,78,910 0/0:19,0:19:54.13:0,54,594 0/0:21,0:21:57.13:0,57,649 0/0:18,0:18:45.09:0,45,509 0/0:15,0:15:45.11:0,45,504 11 1280214 . A C 9.66 . AC=5;AF=0.063;AN=80;BaseQRankSum=-4.851;DP=232;Dels=0.00;FS=54.768;HRun=2;HaplotypeScore=0.0940;InbreedingCoeff=0.0084;MQ=57.67;MQ0=0;MQRankSum=0.927;QD=0.48;ReadPosRankSum=-1.781 GT:AD:DP:GQ:PL 0/0:7,2:9:21.06:0,21,244 0/0:4,2:6:12.04:0,12,144 0/0:4,2:6:12.03:0,12,136 ./. 0/0:2,0:2:6.02:0,6,68 0/0:3,3:6:9.03:0,9,108 0/0:2,0:2:6.02:0,6,73 0/0:2,1:3:6.02:0,6,70 0/1:4,2:6:15.55:16,0,119 0/0:5,4:9:15.05:0,15,179 0/0:5,0:5:15.02:0,15,162 0/1:1,2:3:20.67:21,0,27 0/1:0,1:1:1.76:29,3,0 0/0:8,0:8:24.07:0,24,286 0/0:17,10:27:17.44:0,17,428 0/0:7,0:7:15.02:0,15,163 0/0:1,1:2:3.01:0,3,33 0/0:3,0:3:9.03:0,9,105 0/0:3,2:5:9.03:0,9,105 0/0:9,6:15:27.07:0,27,303 0/0:1,0:1:3.01:0,3,36 0/0:1,6:7:3.01:0,3,36 0/0:2,1:3:6.02:0,6,70 0/0:1,1:2:3.01:0,3,39 ./. 0/0:1,0:1:3.01:0,3,35 0/0:2,2:4:3.01:0,3,32 0/0:2,2:4:6.02:0,6,71 0/0:4,0:4:9.03:0,9,102 0/0:3,1:4:9.03:0,9,105 0/0:5,0:5:15.04:0,15,169 0/0:5,4:9:12.03:0,12,145 0/0:7,2:9:18.05:0,18,205 0/1:2,2:4:22.63:23,0,29 0/0:2,0:2:6.02:0,6,70 0/0:7,3:10:19.30:0,19,215 0/0:7,3:10:18.04:0,18,204 0/0:2,0:2:6.02:0,6,72 0/1:5,1:6:13.50:13,0,159 0/0:5,1:6:15.05:0,15,181 0/0:4,2:6:12.04:0,12,141 0/0:5,3:8:12.03:0,12,137 11 1280238 . G A 120.74 . AC=4;AF=0.049;AN=82;BaseQRankSum=-2.654;DP=288;Dels=0.00;FS=8.312;HRun=1;HaplotypeScore=0.3091;InbreedingCoeff=-0.0843;MQ=58.87;MQ0=0;MQRankSum=-0.822;QD=4.64;ReadPosRankSum=-0.870 GT:AD:DP:GQ:PL 0/0:11,0:11:30.06:0,30,337 0/0:7,0:7:18.05:0,18,225 0/0:9,0:9:21.07:0,21,269 0/0:1,0:1:3.01:0,3,38 0/0:3,0:3:9.03:0,9,113 0/0:5,0:5:15.05:0,15,193 0/0:5,0:5:9.03:0,9,130 0/0:4,0:4:9.03:0,9,117 0/0:8,0:8:24.08:0,24,312 0/0:7,0:7:18.05:0,18,217 0/0:5,0:5:9.03:0,9,128 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.03:0,9,112 0/0:13,0:13:30.09:0,30,388 0/0:24,0:24:57.16:0,57,689 0/0:11,0:11:30.10:0,30,387 0/0:4,0:4:12.03:0,12,139 0/0:4,0:4:12.04:0,12,155 0/0:6,0:7:15.04:0,15,171 0/0:15,0:15:39.12:0,39,492 0/0:7,0:7:18.06:0,18,235 0/0:10,0:10:27.09:0,27,352 0/0:4,0:4:6.02:0,6,90 0/0:4,0:4:12.04:0,12,160 ./. 0/0:1,0:1:3.01:0,3,32 0/1:3,2:5:53.66:54,0,93 0/0:8,0:8:18.06:0,18,245 0/1:2,2:4:58.38:58,0,63 0/0:4,0:4:9.03:0,9,122 0/0:4,0:4:12.04:0,12,146 0/0:7,0:7:12.04:0,12,171 0/0:8,0:8:24.08:0,24,308 0/0:7,0:7:18.06:0,18,238 0/0:7,0:7:21.06:0,21,246 0/1:7,3:10:76.62:77,0,204 0/0:12,0:12:27.09:0,27,357 0/0:5,0:5:12.04:0,12,161 0/0:9,0:9:24.06:0,24,295 0/1:6,1:7:15.91:16,0,209 0/0:8,0:8:18.06:0,18,240 0/0:10,0:10:21.07:0,21,282 11 1309956 . C T 27934.59 . AC=31;AF=0.369;AN=84;BaseQRankSum=11.052;DP=2472;Dels=0.00;FS=5.895;HRun=0;HaplotypeScore=0.9706;InbreedingCoeff=-0.2781;MQ=58.39;MQ0=0;MQRankSum=1.628;QD=16.15;ReadPosRankSum=1.223 GT:AD:DP:GQ:PL 0/1:31,15:46:99:354,0,833 0/1:27,22:49:99:595,0,725 0/1:21,19:40:99:544,0,563 1/1:0,132:132:99:4359,337,0 0/1:69,43:112:99:1157,0,1942 0/0:94,0:94:99:0,223,2849 0/1:37,30:67:99:825,0,1032 0/1:47,36:83:99:979,0,1296 0/0:31,0:31:87.23:0,87,984 0/1:19,21:40:99:539,0,525 0/0:30,0:30:84.23:0,84,959 0/1:20,21:41:99:601,0,505 0/0:35,0:35:87.25:0,87,1052 1/1:0,37:37:99:1319,108,0 0/1:61,75:136:99:2136,0,1472 0/1:25,21:46:99:621,0,646 0/1:22,16:38:99:467,0,574 0/1:23,7:30:99:169,0,673 0/1:50,38:88:99:986,0,1224 0/1:41,34:75:99:976,0,1115 0/0:92,0:93:99:0,214,2634 0/1:32,32:64:99:856,0,786 0/1:61,53:114:99:1497,0,1686 0/1:30,25:55:99:698,0,809 0/0:90,0:90:99:0,229,2935 0/1:18,29:48:99:879,0,461 0/0:35,0:35:87.22:0,87,1000 0/0:37,0:37:96.28:0,96,1142 0/0:37,0:37:99:0,102,1149 0/1:23,17:40:99:376,0,634 0/1:15,23:38:99:690,0,380 0/0:81,0:81:99:0,199,2453 0/0:64,0:64:99:0,177,2052 0/1:15,20:35:99:575,0,423 0/0:40,0:40:99:0,105,1233 0/1:22,28:50:99:833,0,539 1/1:0,88:89:99:3006,241,0 0/1:26,30:56:99:767,0,694 0/1:23,23:46:99:675,0,626 0/0:44,0:44:99:0,126,1466 0/0:31,0:31:90.22:0,90,1036 0/1:19,16:35:99:456,0,509 11 1316953 . CAGCTGGA C 206.46 . AC=3;AF=0.036;AN=84;BaseQRankSum=4.020;DP=372;FS=11.432;HRun=0;HaplotypeScore=54.1394;InbreedingCoeff=-0.0613;MQ=56.45;MQ0=0;MQRankSum=4.642;QD=5.29;ReadPosRankSum=-4.581 GT:AD:DP:GQ:PL 0/0:4,0:4:12.04:0,12,393 0/0:3,0:3:6.02:0,6,252 0/0:3,0:3:9.03:0,9,378 0/0:22,0:22:60.19:0,60,1735 0/0:22,0:22:57.17:0,57,1824 0/0:20,0:20:50.90:0,51,1527 0/0:11,0:10:27.07:0,27,975 0/0:13,0:13:27.06:0,27,819 0/0:6,0:6:18.05:0,18,545 0/0:3,0:3:9.03:0,9,378 0/0:4,0:4:12.04:0,12,366 0/0:6,0:6:18.06:0,18,639 0/0:2,0:2:3.01:0,3,77 0/0:9,0:9:24.08:0,24,962 0/0:16,0:16:48.14:0,48,1720 0/0:9,0:9:21.07:0,21,831 0/0:3,0:3:9.03:0,9,313 0/0:8,0:8:24.08:0,24,821 0/1:11,2:13:56.38:56,0,741 0/0:17,0:17:48.04:0,48,1364 0/0:16,0:16:39.05:0,39,1252 0/0:9,0:9:18.06:0,18,621 0/0:15,0:15:42.14:0,42,1257 0/1:11,5:16:98.73:99,0,861 0/0:5,0:5:15.05:0,15,534 0/0:9,0:9:20.43:0,20,634 0/0:2,0:2:6.01:0,6,98 0/0:6,0:6:15.05:0,15,540 0/0:6,0:6:15.05:0,15,558 0/1:6,4:10:99:135,0,459 0/0:7,0:7:21.06:0,21,724 0/0:4,0:4:9.03:0,9,279 0/0:11,0:11:7.61:0,8,924 0/0:7,0:7:21.07:0,21,693 0/0:12,0:12:36.12:0,36,1259 0/0:6,0:6:15.05:0,15,516 0/0:6,0:6:15.05:0,15,614 0/0:5,0:5:15.05:0,15,572 0/0:6,0:6:18.06:0,18,690 0/0:4,0:4:12.04:0,12,457 0/0:12,0:12:27.09:0,27,866 0/0:4,0:4:12.04:0,12,417 11 1316959 . G C 32.28 . AC=5;AF=0.061;AN=82;BaseQRankSum=-2.770;DP=324;Dels=0.03;FS=9.930;HRun=0;HaplotypeScore=2.2818;InbreedingCoeff=-0.1120;MQ=55.65;MQ0=0;MQRankSum=1.257;QD=0.92;ReadPosRankSum=-4.020 GT:AD:DP:GQ:PL 0/0:2,2:4:6.02:0,6,69 0/0:3,0:3:6.02:0,6,78 0/1:3,1:4:18.56:19,0,100 0/0:12,3:15:30.10:0,30,385 0/0:18,0:18:36.09:0,36,437 0/0:13,0:13:27.07:0,27,332 0/0:11,1:12:21.07:0,21,281 0/0:8,3:11:12.04:0,12,162 0/1:5,2:7:50.71:51,0,97 0/0:3,1:4:9.03:0,9,114 0/0:2,0:2:6.02:0,6,76 0/0:4,0:4:12.03:0,12,137 ./. 0/0:9,1:10:21.07:0,21,262 0/0:14,3:18:39.09:0,39,467 0/0:7,0:7:18.05:0,18,217 0/0:3,1:4:6.02:0,6,76 0/0:7,0:7:21.06:0,21,245 0/0:6,0:7:9.03:0,9,112 0/0:10,1:12:24.07:0,24,280 0/0:11,1:13:21.06:0,21,251 0/1:7,2:9:18.39:18,0,133 0/0:8,1:9:15.05:0,15,186 0/0:8,0:8:15.04:0,15,185 0/0:5,0:5:12.04:0,12,156 0/0:10,0:10:12.04:0,12,144 0/0:1,0:1:3.01:0,3,33 0/1:6,1:7:18.10:18,0,144 0/0:5,0:5:12.03:0,12,146 0/0:4,0:4:9.03:0,9,112 0/0:7,0:7:18.05:0,18,216 0/0:3,0:3:6.02:0,6,80 0/0:12,2:14:0.87:7,0,247 0/0:5,1:6:12.04:0,12,149 0/0:9,0:9:27.07:0,27,306 0/1:7,1:8:16.52:17,0,115 0/0:6,1:7:15.03:0,15,162 0/0:4,0:4:12.04:0,12,147 0/0:5,0:5:15.04:0,15,178 0/0:3,1:4:9.01:0,9,98 0/0:9,0:9:18.05:0,18,202 0/0:3,0:3:9.03:0,9,112 11 1316960 . A C 487.11 . AC=24;AF=0.300;AN=80;BaseQRankSum=-4.443;DP=412;Dels=0.03;FS=45.115;HRun=2;HaplotypeScore=2.3180;InbreedingCoeff=-0.4433;MQ=56.50;MQ0=0;MQRankSum=-1.472;QD=1.78;ReadPosRankSum=-4.245 GT:AD:DP:GQ:PL 0/1:2,4:6:25.33:25,0,55 0/0:2,2:4:6.02:0,6,71 0/1:3,3:6:15.64:16,0,91 0/1:10,12:22:37.22:37,0,264 0/0:9,11:20:1.65:3,0,274 0/1:8,9:17:4.59:5,0,210 0/1:7,6:13:12.06:12,0,214 0/1:5,8:13:18.08:18,0,154 0/1:4,2:7:14.65:15,0,88 0/1:3,4:7:24.09:24,0,92 0/0:2,1:3:6.02:0,6,72 0/0:4,1:5:12.04:0,12,144 ./. 0/1:8,6:14:9.53:10,0,189 0/1:14,9:23:23.50:23,0,405 0/0:6,3:9:18.05:0,18,210 0/1:2,4:6:26.23:26,0,58 0/0:5,1:7:15.04:0,15,169 0/0:4,1:5:12.03:0,12,137 0/1:8,6:15:4.59:5,0,219 0/1:8,9:17:3.64:4,0,182 0/1:3,7:10:56.34:56,0,79 0/1:5,11:16:7.66:8,0,136 0/0:5,3:8:15.04:0,15,172 0/1:3,3:6:19.52:20,0,94 0/1:4,8:12:79.74:80,0,106 ./. 0/1:4,3:7:23.54:24,0,119 0/1:3,3:6:12.66:13,0,95 0/0:3,1:4:9.02:0,9,100 0/0:5,2:7:15.04:0,15,172 0/0:2,9:11:6.02:0,6,75 0/1:7,9:16:91.17:91,0,174 0/1:5,3:8:13.52:14,0,131 0/0:7,3:10:18.04:0,18,205 0/1:4,6:10:51.82:52,0,92 0/1:4,7:11:48.67:49,0,118 0/0:3,1:4:9.02:0,9,97 0/0:5,3:8:15.04:0,15,172 0/1:3,3:6:19.52:20,0,94 0/0:6,3:9:18.03:0,18,190 0/0:4,3:7:9.03:0,9,104 11 1316977 . T C 164.39 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.822;DP=470;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2142;InbreedingCoeff=-0.0265;MQ=55.19;MQ0=0;MQRankSum=1.284;QD=14.94;ReadPosRankSum=0.657 GT:AD:DP:GQ:PL 0/0:8,0:8:24.06:0,24,288 0/0:10,0:10:27.08:0,27,312 0/0:7,0:7:21.06:0,21,250 0/0:20,0:20:57.17:0,57,695 0/0:18,0:18:51.15:0,51,620 0/0:17,0:17:48.12:0,48,564 0/0:12,0:12:33.10:0,33,397 0/0:17,0:17:48.14:0,48,591 0/0:11,0:11:30.09:0,30,362 0/0:7,0:7:21.06:0,21,251 0/0:4,0:4:12.04:0,12,142 0/0:8,0:8:21.06:0,21,250 0/0:4,0:4:12.04:0,12,146 0/0:10,0:10:30.09:0,30,369 0/0:27,0:27:69.21:0,69,837 0/0:15,0:15:45.12:0,45,520 0/0:6,0:6:18.06:0,18,222 0/0:8,0:8:24.07:0,24,279 0/0:13,0:13:36.11:0,36,426 0/0:12,0:12:33.10:0,33,398 0/0:20,0:20:54.16:0,54,643 0/0:15,0:15:42.13:0,42,500 0/0:19,0:19:54.17:0,54,674 0/0:14,0:14:39.11:0,39,461 0/0:8,0:8:21.06:0,21,252 0/0:10,0:10:30.09:0,30,357 0/1:1,3:4:26.54:85,0,27 0/1:2,5:7:51.69:141,0,52 0/0:5,0:5:15.05:0,15,181 0/0:10,0:10:30.09:0,30,366 0/0:9,0:9:27.06:0,27,311 0/0:16,0:16:45.14:0,45,558 0/0:21,0:21:54.16:0,54,651 0/0:11,0:11:33.10:0,33,392 0/0:10,0:10:27.08:0,27,332 0/0:9,0:9:27.08:0,27,323 0/0:12,0:12:36.11:0,36,435 0/0:4,0:4:12.04:0,12,142 0/0:13,0:13:39.11:0,39,460 0/0:6,0:6:18.05:0,18,211 0/0:5,0:5:15.04:0,15,167 0/0:8,0:8:24.05:0,24,272 11 1317004 . C T 325.44 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.265;DP=347;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3045;InbreedingCoeff=-0.0384;MQ=59.02;MQ0=0;MQRankSum=-0.187;QD=14.15;ReadPosRankSum=0.516 GT:AD:DP:GQ:PL 0/0:8,0:8:24.04:0,24,240 0/0:4,0:4:12.02:0,12,122 0/0:5,0:5:12.03:0,12,123 0/0:16,0:16:45.12:0,45,513 0/0:6,0:6:18.05:0,18,215 0/1:2,7:9:51.17:160,0,51 0/0:9,0:9:24.06:0,24,278 0/1:5,9:14:99:227,0,145 0/0:6,0:6:18.05:0,18,192 0/0:5,0:5:15.04:0,15,169 0/0:2,0:2:6.02:0,6,70 0/0:8,0:8:24.05:0,24,249 0/0:4,0:4:12.03:0,12,131 0/0:10,0:10:30.08:0,30,332 0/0:19,0:19:51.12:0,51,576 0/0:12,0:12:33.09:0,33,380 0/0:4,0:4:12.03:0,12,136 0/0:7,0:7:21.05:0,21,225 0/0:6,0:6:18.04:0,18,193 0/0:14,0:14:39.09:0,39,422 0/0:12,0:12:33.08:0,33,354 0/0:12,0:12:33.09:0,33,381 0/0:15,0:15:39.11:0,39,463 0/0:10,0:10:30.08:0,30,346 0/0:5,0:5:12.03:0,12,141 0/0:6,0:6:18.04:0,18,195 0/0:5,0:5:12.03:0,12,134 0/0:5,0:5:15.04:0,15,166 0/0:6,0:6:15.04:0,15,176 0/0:8,0:8:24.07:0,24,279 0/0:6,0:6:18.05:0,18,193 0/0:18,0:18:51.14:0,51,575 0/0:11,0:11:27.07:0,27,309 0/0:7,0:7:21.04:0,21,221 0/0:11,0:11:27.07:0,27,314 0/0:6,0:6:18.05:0,18,193 0/0:8,0:8:24.06:0,24,260 0/0:2,0:2:5.99:0,6,52 0/0:10,0:10:30.07:0,30,317 0/0:8,0:8:21.05:0,21,228 0/0:4,0:4:12.03:0,12,136 0/0:4,0:4:12.03:0,12,129 11 1501963 . G C 39.05 . AC=8;AF=0.095;AN=84;BaseQRankSum=-5.387;DP=389;Dels=0.00;FS=121.121;HRun=2;HaplotypeScore=0.4365;InbreedingCoeff=-0.1590;MQ=58.41;MQ0=0;MQRankSum=-0.225;QD=0.61;ReadPosRankSum=-5.916 GT:AD:DP:GQ:PL 0/0:3,2:5:9.03:0,9,117 0/0:8,0:8:21.06:0,21,250 0/0:4,1:5:9.02:0,9,98 0/0:16,7:23:7.57:0,8,449 0/0:11,1:12:33.11:0,33,436 0/0:16,0:16:39.11:0,39,476 0/0:11,1:12:2.60:1,0,372 0/0:5,1:6:12.04:0,12,155 0/0:6,1:7:15.04:0,15,177 0/1:9,1:10:14.50:14,0,244 0/1:11,1:12:7.72:8,0,300 0/0:11,1:12:33.10:0,33,392 0/0:6,0:6:18.05:0,18,208 0/0:6,3:9:18.05:0,18,216 0/0:21,1:22:30.50:0,30,654 0/0:9,1:10:27.07:0,27,331 0/0:11,1:12:21.07:0,21,273 0/0:2,0:2:6.01:0,6,64 0/0:8,2:10:24.07:0,24,288 0/0:10,1:11:24.05:0,24,284 0/0:7,5:12:15.05:0,15,181 0/1:7,1:8:15.24:15,0,250 0/0:14,2:16:38.71:0,39,485 0/0:5,0:5:12.04:0,12,153 0/1:12,2:14:8.48:8,0,315 0/0:8,2:10:24.06:0,24,304 0/0:4,0:4:12.04:0,12,153 0/1:1,2:3:23.61:25,0,24 0/0:3,1:4:9.03:0,9,108 0/0:6,0:6:15.05:0,15,190 0/0:6,2:8:18.03:0,18,210 0/0:9,3:12:1.38:4,0,274 0/0:8,1:9:1.55:4,0,139 0/1:5,2:7:41.11:41,0,140 0/0:6,1:7:12.01:0,12,139 0/0:8,2:10:24.07:0,24,287 0/0:11,2:13:1.49:4,0,338 0/1:6,1:7:7.67:8,0,148 0/0:7,1:8:18.03:0,18,208 0/0:3,0:3:9.03:0,9,110 0/0:9,1:10:7.38:0,7,296 0/1:2,1:3:23.47:23,0,70 11 1502097 . A G 8149.75 . AC=71;AF=0.845;AN=84;BaseQRankSum=3.961;DP=285;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.1507;InbreedingCoeff=0.2143;MQ=58.77;MQ0=0;MQRankSum=1.387;QD=29.74;ReadPosRankSum=0.728 GT:AD:DP:GQ:PL 0/1:5,2:7:58.32:58,0,134 0/1:4,4:8:99:99,0,131 1/1:0,3:3:9.03:116,9,0 1/1:0,7:7:18.05:226,18,0 1/1:0,5:5:15.05:203,15,0 1/1:0,2:2:6.02:80,6,0 1/1:0,4:4:12.04:152,12,0 1/1:0,7:7:21.07:272,21,0 1/1:0,5:5:12.04:153,12,0 1/1:0,4:4:12.04:145,12,0 0/1:2,2:4:64.33:64,0,65 1/1:0,6:6:15.05:201,15,0 1/1:0,5:5:15.05:187,15,0 1/1:0,6:6:18.06:228,18,0 1/1:0,26:26:69.22:885,69,0 1/1:0,5:5:15.05:192,15,0 1/1:0,8:8:21.07:274,21,0 1/1:0,3:3:9.03:114,9,0 1/1:0,8:8:21.07:270,21,0 1/1:0,11:11:27.09:353,27,0 1/1:0,16:16:39.11:503,39,0 1/1:0,7:7:18.06:234,18,0 1/1:0,6:6:18.06:233,18,0 1/1:0,2:2:6.02:81,6,0 1/1:0,9:9:27.09:355,27,0 1/1:0,5:5:15.05:203,15,0 1/1:0,4:4:12.04:153,12,0 1/1:0,2:2:6.02:76,6,0 1/1:0,11:11:27.08:333,27,0 0/1:3,1:4:24.94:25,0,99 0/1:3,4:7:92.95:129,0,93 1/1:0,17:17:42.14:546,42,0 1/1:0,6:6:12.04:164,12,0 1/1:0,4:4:12.04:153,12,0 0/1:3,1:4:21.40:21,0,95 0/1:3,2:5:67.28:67,0,70 0/0:8,0:8:24.08:0,24,306 0/1:3,1:4:0.97:0,6,73 0/1:8,2:10:42.41:42,0,214 1/1:0,11:11:30.09:374,30,0 0/0:3,0:3:9.03:0,9,110 1/1:0,6:6:15.04:184,15,0 11 1778619 . G C 298.74 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.674;DP=1497;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.1846;InbreedingCoeff=-0.0120;MQ=58.85;MQ0=0;MQRankSum=-0.865;QD=11.49;ReadPosRankSum=-1.833 GT:AD:DP:GQ:PL 0/0:23,0:23:63.18:0,63,758 0/0:28,0:28:78.18:0,78,889 0/0:26,0:26:75.17:0,75,857 0/0:77,0:77:99:0,193,2401 0/0:43,1:44:99:0,114,1429 0/0:36,0:36:99:0,99,1219 0/0:34,0:34:87.24:0,87,1084 0/0:42,0:42:99:0,108,1387 0/0:29,0:29:84.22:0,84,951 0/0:28,0:28:78.23:0,78,952 0/0:22,0:22:63.17:0,63,718 0/0:28,0:28:75.22:0,75,885 0/1:12,14:26:99:345,0,348 0/0:30,0:30:84.21:0,84,974 0/0:92,0:92:99:0,238,2847 0/0:34,0:34:96.23:0,96,1091 0/0:36,0:36:99:0,99,1139 0/0:24,1:25:69.15:0,69,765 0/0:52,0:52:99:0,144,1672 0/0:44,0:44:99:0,114,1357 0/0:55,0:55:99:0,129,1519 0/0:33,0:33:87.26:0,87,1067 0/0:62,0:63:99:0,156,1991 0/0:24,0:24:72.20:0,72,864 0/0:35,0:35:87.25:0,87,1083 0/0:44,0:44:93.30:0,93,1227 0/0:32,0:32:87.24:0,87,1009 0/0:29,0:29:78.21:0,78,902 0/0:22,0:22:57.16:0,57,661 0/0:26,0:26:66.18:0,66,784 0/0:25,0:25:72.20:0,72,858 0/0:47,0:47:99:0,108,1268 0/0:35,0:35:81.14:0,81,931 0/0:23,0:23:66.14:0,66,746 0/0:24,0:24:69.20:0,69,815 0/0:35,0:35:87.23:0,87,1050 0/0:39,0:39:99:0,105,1218 0/0:27,0:27:75.20:0,75,879 0/0:28,0:28:78.20:0,78,893 0/0:35,0:35:99:0,99,1139 0/0:23,0:23:54.16:0,54,671 0/0:37,0:37:96.25:0,96,1150 11 1778725 . A C 287.34 . AC=15;AF=0.179;AN=84;BaseQRankSum=-14.506;DP=1062;Dels=0.00;FS=257.337;HRun=2;HaplotypeScore=1.5263;InbreedingCoeff=-0.2435;MQ=58.43;MQ0=0;MQRankSum=3.260;QD=0.91;ReadPosRankSum=-5.571 GT:AD:DP:GQ:PL 0/1:6,5:11:30.27:30,0,188 0/1:7,9:16:9.37:9,0,222 0/0:14,9:23:39.11:0,39,453 0/0:34,23:57:63.65:0,64,1052 0/0:30,18:48:26.05:0,26,870 0/0:22,13:35:66.18:0,66,777 0/0:17,9:26:26.46:0,26,563 0/0:19,16:36:54.13:0,54,622 0/0:8,10:18:2.27:2,0,212 0/0:19,6:25:51.15:0,51,612 0/0:4,7:11:9.03:0,9,122 0/0:13,8:22:6.48:0,6,367 0/1:9,6:15:25.30:25,0,216 0/1:10,9:19:26.11:26,0,266 0/0:34,23:57:59.66:0,60,994 0/1:9,4:13:35.19:35,0,228 0/0:14,10:24:42.07:0,42,470 0/0:7,10:17:18.94:0,19,220 0/0:21,7:28:3.13:0,3,646 0/0:22,15:37:34.30:0,34,637 0/1:14,14:29:22.17:22,0,317 0/0:9,12:22:1.43:0,1,275 0/1:28,27:55:73.86:74,0,817 0/0:19,16:35:48.12:0,48,567 0/0:24,15:39:42.35:0,42,730 0/0:31,15:46:16.94:0,17,877 0/0:10,6:17:30.09:0,30,360 0/0:16,11:27:21.51:0,22,516 0/1:8,7:15:52.91:53,0,231 0/0:7,6:13:21.05:0,21,236 0/0:10,5:15:24.06:0,24,276 0/1:15,15:30:11.06:11,0,420 0/1:9,11:20:8.43:8,0,235 0/0:6,9:15:18.04:0,18,203 0/1:6,7:13:3.99:4,0,154 0/0:7,5:12:21.04:0,21,232 0/1:18,14:32:90.52:91,0,508 0/1:7,4:11:11.18:11,0,230 0/0:11,10:21:4.36:0,4,266 0/1:10,8:18:19.25:19,0,280 0/1:7,11:18:12.38:12,0,182 0/0:13,8:21:5.96:0,6,325 11 1780205 . A G 6412.72 . AC=4;AF=0.048;AN=84;BaseQRankSum=-5.461;DP=4169;Dels=0.00;FS=1.490;HRun=1;HaplotypeScore=2.2802;InbreedingCoeff=-0.0500;MQ=58.61;MQ0=0;MQRankSum=-0.694;QD=13.73;ReadPosRankSum=1.850 GT:AD:DP:GQ:PL 0/0:82,0:82:99:0,241,2935 0/0:79,0:79:99:0,232,2798 0/0:72,0:72:99:0,208,2535 0/0:194,1:196:99:0,542,6856 0/1:97,83:180:99:2399,0,2992 0/0:169,0:169:99:0,469,5943 0/0:148,1:149:99:0,430,5375 0/1:69,72:141:99:2122,0,1962 0/0:70,0:70:99:0,196,2372 0/0:59,0:59:99:0,172,2099 0/0:70,0:70:99:0,211,2540 0/0:58,0:58:99:0,172,2074 0/0:49,0:49:99:0,147,1803 0/0:70,1:71:99:0,205,2500 0/0:211,1:213:99:0,596,7199 0/0:58,0:58:99:0,172,2070 0/0:67,0:67:99:0,196,2386 0/0:64,0:64:99:0,190,2304 0/0:119,1:120:99:0,309,3939 0/0:156,0:156:99:0,454,5499 0/0:119,0:120:99:0,340,4152 0/0:84,0:84:99:0,241,2916 0/0:230,0:230:99:0,671,8259 0/0:129,0:129:99:0,370,4632 0/0:152,0:152:99:0,442,5498 0/0:107,0:107:99:0,310,3784 0/0:59,0:60:99:0,178,2137 0/0:76,0:76:99:0,223,2722 0/0:61,0:61:99:0,175,2105 0/1:42,36:78:99:904,0,1256 0/1:33,35:68:99:988,0,894 0/0:127,1:128:99:0,367,4415 0/0:91,0:91:99:0,265,3165 0/0:57,0:57:99:0,169,2073 0/0:73,0:73:99:0,205,2480 0/0:79,0:79:99:0,232,2825 0/0:104,0:105:99:0,304,3709 0/0:70,0:70:99:0,208,2480 0/0:81,0:81:99:0,232,2782 0/0:71,1:72:99:0,180,2514 0/0:62,0:62:99:0,184,2210 0/0:62,0:63:99:0,175,2099 11 1780234 . T TG 73.20 . 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GCCC G 53.82 . 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C G 42.79 . 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C G 190.09 . AC=6;AF=0.071;AN=84;BaseQRankSum=-23.843;DP=4477;DS;Dels=0.02;FS=1582.732;HRun=1;HaplotypeScore=20.2848;InbreedingCoeff=-0.0952;MQ=58.30;MQ0=2;MQRankSum=0.603;QD=0.38;ReadPosRankSum=-9.049 GT:AD:DP:GQ:PL 0/0:52,20:73:22.04:0,22,1396 0/0:64,26:90:99:0,104,1827 0/0:61,7:68:99:0,153,1800 0/0:171,78:249:87.57:0,88,4814 0/0:136,64:200:1.13:5,0,3594 0/0:100,34:134:99:0,136,3064 0/0:127,41:168:99:0,104,3414 0/0:104,39:143:25.55:0,26,2740 0/0:49,17:66:2.15:2,0,1251 0/0:55,22:77:83.73:0,84,1554 0/0:48,16:64:28.95:0,29,1419 0/0:58,17:75:57.44:0,57,1477 0/0:44,13:57:73.74:0,74,1194 0/0:63,25:88:90.63:0,91,1884 0/0:164,83:250:55.10:0,55,4148 0/0:58,17:76:45.82:0,46,1461 0/1:54,21:75:68.20:68,0,1388 0/1:47,27:74:58.08:58,0,1098 0/0:80,23:105:99:0,151,2013 0/0:116,44:160:99:0,136,3040 0/1:72,39:112:86.23:86,0,1534 0/0:65,1:66:99:0,159,1867 0/0:176,74:250:99:0,168,4932 0/0:103,38:141:99:0,233,3065 0/0:117,38:156:99:0,122,3381 0/0:109,31:140:99:0,193,3376 0/0:45,21:66:34.05:0,34,1223 0/0:59,27:87:99:0,116,1650 0/0:48,19:67:29.14:0,29,1316 0/1:58,29:88:45.51:46,0,1699 0/0:49,4:53:99:0,123,1472 0/0:118,35:153:99:0,191,2943 0/0:60,29:89:38.28:0,38,1480 0/0:55,20:75:23.17:0,23,1550 0/0:53,19:73:45.39:0,45,1359 0/0:44,26:70:25.26:0,25,943 0/0:58,7:66:99:0,105,1402 0/0:57,21:78:27.41:0,27,1539 0/0:51,16:67:66.12:0,66,1330 0/1:46,19:66:9.68:10,0,1029 0/0:47,19:66:75.65:0,76,1155 0/1:58,22:80:22.72:23,0,1522 11 1780238 . C CG 1137.73 . 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T C 446.91 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.436;DP=1460;Dels=0.00;FS=14.974;HRun=0;HaplotypeScore=0.8724;InbreedingCoeff=-0.0244;MQ=59.01;MQ0=0;MQRankSum=2.773;QD=8.28;ReadPosRankSum=1.499 GT:AD:DP:GQ:PL 0/0:25,0:25:60.15:0,60,697 0/0:17,0:17:51.12:0,51,565 0/0:25,1:27:72.17:0,72,823 0/0:63,0:64:99:0,174,1963 0/0:72,1:74:99:0,198,2194 0/0:45,1:46:99:0,132,1501 0/0:35,0:35:99:0,102,1098 0/0:26,1:27:75.17:0,75,836 0/0:25,0:25:69.17:0,69,764 0/0:32,0:32:87.24:0,87,992 0/0:18,0:19:45.13:0,45,520 0/0:30,0:30:84.15:0,84,928 0/0:15,0:16:39.08:0,39,430 0/0:24,0:24:72.19:0,72,816 0/0:61,0:62:99:0,165,1894 0/0:22,0:23:60.13:0,60,645 0/0:20,0:20:57.12:0,57,615 0/0:22,0:22:60.15:0,60,689 0/0:48,0:48:99:0,126,1421 0/0:71,0:73:99:0,180,2068 0/0:52,1:56:99:0,144,1651 0/0:48,0:49:99:0,126,1412 0/0:64,1:67:99:0,189,2069 0/0:25,0:25:69.19:0,69,810 0/0:51,0:51:99:0,141,1609 0/0:37,0:37:99:0,105,1136 0/0:22,0:23:57.12:0,57,618 0/0:25,0:25:69.18:0,69,785 0/0:22,1:23:63.15:0,63,693 0/0:25,1:27:72.15:0,72,801 0/0:28,0:28:81.19:0,81,894 0/0:49,0:51:99:0,135,1490 0/0:32,0:33:90.16:0,90,960 0/1:15,11:27:99:350,0,351 0/0:25,0:25:63.10:0,63,704 0/1:18,8:27:99:160,0,508 0/0:46,0:48:99:0,129,1500 0/0:28,0:28:84.22:0,84,940 0/0:24,1:25:69.15:0,69,738 0/0:24,1:25:66.16:0,66,730 0/0:13,0:13:39.11:0,39,446 0/0:38,0:38:99:0,108,1226 11 1856344 . C A 2049.97 . AC=5;AF=0.060;AN=84;BaseQRankSum=-0.962;DP=1595;Dels=0.00;FS=6.051;HRun=1;HaplotypeScore=2.0112;InbreedingCoeff=-0.0633;MQ=58.69;MQ0=0;MQRankSum=1.206;QD=10.25;ReadPosRankSum=2.132 GT:AD:DP:GQ:PL 0/1:17,10:27:99:215,0,358 0/0:17,0:17:42.12:0,42,502 0/0:23,0:23:60.15:0,60,694 0/0:84,0:84:99:0,196,2492 0/0:80,0:80:99:0,190,2422 0/0:57,0:57:99:0,144,1859 0/0:42,0:42:99:0,105,1320 0/0:41,0:41:99:0,99,1254 0/0:25,0:25:63.20:0,63,789 0/0:37,0:37:93.27:0,93,1108 0/0:21,0:21:54.15:0,54,650 0/0:32,0:32:78.23:0,78,947 0/1:9,6:15:99:138,0,227 0/0:23,0:23:66.19:0,66,777 0/0:73,0:73:99:0,181,2181 0/0:25,0:25:66.16:0,66,761 0/0:27,0:27:72.20:0,72,867 0/0:23,0:23:63.17:0,63,746 0/0:52,1:53:99:0,129,1511 0/1:32,42:74:99:1015,0,784 0/0:63,0:63:99:0,171,2002 0/0:46,0:46:99:0,117,1376 0/0:78,0:79:99:0,184,2336 0/1:22,6:28:99:113,0,496 0/1:32,24:56:99:665,0,706 0/0:44,0:44:99:0,114,1453 0/0:21,0:21:54.16:0,54,656 0/0:29,0:29:69.18:0,69,823 0/0:25,0:25:66.19:0,66,789 0/0:19,0:19:48.15:0,48,597 0/0:24,1:25:45.53:0,46,804 0/0:53,0:53:99:0,132,1606 0/0:38,0:38:96.28:0,96,1168 0/0:25,0:25:69.20:0,69,827 0/0:25,0:25:60.19:0,60,769 0/0:28,0:28:66.19:0,66,784 0/0:52,1:53:99:0,141,1664 0/0:27,0:27:72.20:0,72,853 0/0:28,0:28:72.20:0,72,856 0/0:26,0:27:63.18:0,63,771 0/0:20,0:20:51.16:0,51,629 0/0:37,0:37:99:0,99,1194 11 1857173 . T C 49423.80 . AC=84;AF=1.000;AN=84;DP=1678;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.1404;InbreedingCoeff=-0.0000;MQ=58.80;MQ0=0;QD=29.45 GT:AD:DP:GQ:PL 1/1:0,23:23:66.13:728,66,0 1/1:0,27:27:69.18:805,69,0 1/1:0,27:27:75.20:889,75,0 1/1:0,118:121:99:3601,304,0 1/1:0,96:97:99:2781,232,0 1/1:0,47:49:99:1456,120,0 1/1:0,56:56:99:1573,129,0 1/1:0,59:61:99:1793,141,0 1/1:0,31:31:84.19:937,84,0 1/1:0,27:27:72.18:818,72,0 1/1:0,28:28:69.16:763,69,0 1/1:0,29:29:75.20:865,75,0 1/1:0,24:24:66.14:707,66,0 1/1:0,28:29:75.15:842,75,0 1/1:0,81:81:99:2384,213,0 1/1:0,36:37:90.24:1053,90,0 1/1:0,28:28:75.13:818,75,0 1/1:0,30:32:78.19:887,78,0 1/1:0,55:55:99:1583,144,0 1/1:0,53:53:99:1472,123,0 1/1:0,34:34:90.26:1079,90,0 1/1:0,29:29:78.20:871,78,0 1/1:0,94:94:99:2705,223,0 1/1:0,28:28:69.16:846,69,0 1/1:0,49:49:99:1464,120,0 1/1:0,44:44:99:1266,102,0 1/1:0,19:19:45.07:498,45,0 1/1:0,32:32:96.21:1064,96,0 1/1:0,18:18:45.10:525,45,0 1/1:0,29:30:69.16:791,69,0 1/1:0,28:28:75.21:876,75,0 1/1:0,53:54:99:1590,141,0 1/1:0,34:34:87.22:992,87,0 1/1:0,25:25:66.16:749,66,0 1/1:0,30:30:87.19:970,87,0 1/1:0,36:36:93.20:1032,93,0 1/1:0,43:43:99:1260,108,0 1/1:0,26:26:66.17:766,66,0 1/1:0,26:26:66.18:763,66,0 1/1:0,23:23:60.13:686,60,0 1/1:0,36:37:96.24:1122,96,0 1/1:0,24:24:66.14:753,66,0 11 1857747 . T C 10570.35 . AC=30;AF=0.357;AN=84;BaseQRankSum=16.593;DP=1195;Dels=0.00;FS=340.253;HRun=1;HaplotypeScore=1.1523;InbreedingCoeff=-0.3412;MQ=57.89;MQ0=0;MQRankSum=7.178;QD=14.64;ReadPosRankSum=-2.019 GT:AD:DP:GQ:PL 0/1:6,22:28:70.18:598,0,70 0/1:11,12:23:99:314,0,316 0/1:12,14:26:99:291,0,314 0/0:71,2:74:99:0,211,2423 0/0:58,5:63:99:0,140,1957 0/1:15,11:26:99:344,0,426 0/1:23,18:41:99:459,0,715 0/0:30,2:32:84.25:0,84,999 0/1:8,11:19:99:261,0,234 0/1:9,13:22:99:337,0,250 0/0:17,1:18:51.15:0,51,596 0/1:11,3:14:5.48:5,0,309 0/1:7,5:12:90.88:91,0,153 0/1:14,13:27:99:330,0,415 0/1:25,25:50:99:542,0,711 0/1:10,13:23:99:242,0,268 0/0:26,3:29:75.22:0,75,873 0/0:21,4:25:54.16:0,54,636 0/1:19,20:40:99:526,0,521 1/1:0,35:35:93.30:1208,93,0 0/0:30,4:35:87.26:0,87,1039 0/0:21,1:22:57.16:0,57,662 0/0:53,4:57:99:0,153,1797 0/1:18,15:33:99:426,0,524 0/1:18,30:48:99:780,0,406 0/1:16,10:26:99:197,0,490 0/1:7,2:9:49.30:49,0,211 0/0:17,4:21:26.44:0,26,485 0/1:10,12:22:99:359,0,255 0/1:16,12:28:99:301,0,476 0/1:8,12:20:99:290,0,225 0/0:26,4:30:72.21:0,72,847 0/0:28,6:34:69.18:0,69,779 1/1:0,23:23:57.17:712,57,0 0/1:5,12:17:99:289,0,128 0/1:7,17:24:99:448,0,185 0/0:20,0:20:57.16:0,57,664 0/1:8,14:22:99:373,0,158 0/0:11,2:13:33.10:0,33,386 0/1:13,15:28:99:330,0,347 0/1:8,7:15:99:220,0,223 0/1:11,10:21:99:248,0,335 11 1857751 . C G 10897.63 . AC=30;AF=0.357;AN=84;BaseQRankSum=-1.704;DP=1292;Dels=0.00;FS=4.149;HRun=1;HaplotypeScore=1.1489;InbreedingCoeff=-0.3481;MQ=57.89;MQ0=0;MQRankSum=2.421;QD=13.95;ReadPosRankSum=2.502 GT:AD:DP:GQ:PL 0/1:11,18:29:99:577,0,291 0/1:13,9:22:99:286,0,377 0/1:15,11:26:99:281,0,446 0/0:82,0:82:99:0,235,3050 0/0:58,1:60:99:0,139,2213 0/1:18,17:35:99:549,0,564 0/1:25,19:44:99:544,0,797 0/0:34,0:34:90.29:0,90,1191 0/1:10,9:19:99:228,0,274 0/1:11,11:22:99:311,0,321 0/0:18,0:18:54.17:0,54,686 0/1:15,2:17:30.48:30,0,425 0/1:11,3:14:74.27:74,0,323 0/1:17,14:31:99:399,0,472 0/1:31,29:60:99:753,0,795 0/1:17,10:27:99:255,0,512 0/0:29,0:29:75.22:0,75,929 0/0:29,0:29:72.23:0,72,917 0/1:24,20:44:99:468,0,684 1/1:1,35:36:90.28:1170,90,0 0/0:43,0:43:99:0,120,1467 0/0:23,0:23:63.19:0,63,783 0/0:58,0:58:99:0,150,2033 0/1:21,14:35:99:406,0,700 0/1:22,27:49:99:733,0,560 0/1:19,9:28:99:231,0,641 0/1:8,3:11:62.52:63,0,269 0/0:22,0:22:57.17:0,57,700 0/1:11,13:24:99:397,0,291 0/1:21,9:30:99:257,0,654 0/1:9,11:20:99:308,0,283 0/0:34,0:34:87.26:0,87,1096 0/0:37,0:37:99:0,99,1232 1/1:0,22:22:51.12:623,51,0 0/1:8,9:17:99:239,0,205 0/1:9,16:25:99:448,0,236 0/0:27,0:27:69.21:0,69,852 0/1:11,12:23:99:346,0,272 0/0:15,0:15:45.14:0,45,556 0/1:17,14:31:99:389,0,439 0/1:7,8:15:99:249,0,222 0/1:15,10:25:99:283,0,426 11 1857762 . C T 3039.15 . AC=9;AF=0.107;AN=84;BaseQRankSum=-2.710;DP=1364;Dels=0.00;FS=2.105;HRun=0;HaplotypeScore=1.0050;InbreedingCoeff=-0.1200;MQ=58.03;MQ0=0;MQRankSum=0.560;QD=14.20;ReadPosRankSum=-0.949 GT:AD:DP:GQ:PL 0/0:31,1:32:62.55:0,63,968 0/1:10,13:23:99:412,0,290 0/1:12,15:27:99:450,0,289 0/0:79,0:79:99:0,223,2903 0/0:66,0:66:99:0,193,2512 0/0:45,0:45:99:0,129,1679 0/0:45,0:45:99:0,126,1657 0/0:38,0:38:99:0,102,1348 0/0:20,0:20:51.13:0,51,611 0/1:11,12:23:99:347,0,339 0/0:23,0:23:63.19:0,63,770 0/0:19,0:19:54.16:0,54,639 0/0:16,0:16:45.13:0,45,529 0/0:32,0:32:87.27:0,87,1089 0/0:61,0:61:99:0,150,1892 0/0:29,0:29:81.23:0,81,989 0/0:30,0:30:75.21:0,75,943 0/0:30,0:30:81.24:0,81,978 0/0:44,0:44:99:0,117,1426 0/0:37,0:37:93.28:0,93,1170 0/0:45,0:46:99:0,126,1465 0/0:21,0:21:60.18:0,60,737 0/0:63,0:63:99:0,178,2374 0/0:38,0:38:99:0,108,1364 0/0:50,0:50:99:0,120,1610 0/0:30,0:30:87.24:0,87,1110 0/0:14,0:14:42.13:0,42,521 0/0:24,0:24:54.17:0,54,676 0/1:12,10:22:99:274,0,350 0/0:32,0:32:90.26:0,90,1078 0/0:21,0:23:54.17:0,54,685 0/0:35,0:36:96.28:0,96,1189 0/0:41,0:41:99:0,111,1318 0/0:20,0:20:57.13:0,57,653 0/0:16,0:16:39.12:0,39,476 0/0:28,0:28:81.22:0,81,966 0/1:17,14:31:99:388,0,420 0/0:22,0:22:63.18:0,63,762 0/1:10,6:16:99:179,0,270 0/1:16,17:33:99:482,0,395 0/1:9,6:15:99:177,0,274 0/1:10,14:24:99:459,0,269 11 1857811 . G C 507.86 . AC=17;AF=0.202;AN=84;BaseQRankSum=-12.100;DP=1142;Dels=0.00;FS=537.357;HRun=1;HaplotypeScore=1.0493;InbreedingCoeff=-0.2796;MQ=58.15;MQ0=0;MQRankSum=-0.373;QD=1.09;ReadPosRankSum=-9.782 GT:AD:DP:GQ:PL 0/1:9,10:19:24.25:24,0,265 0/1:7,9:16:43.82:44,0,156 0/1:12,6:18:88.36:88,0,297 0/1:40,32:72:87.85:88,0,1109 0/0:39,31:70:5.32:0,5,1165 0/0:31,13:44:27.32:0,27,964 0/0:38,15:53:77.91:0,78,973 0/1:17,15:32:88.18:88,0,553 0/0:11,4:15:30.06:0,30,341 0/0:12,4:16:30.07:0,30,355 0/0:9,6:15:24.07:0,24,286 0/0:9,7:16:21.06:0,21,261 0/0:4,2:6:12.04:0,12,149 0/0:19,11:30:25.46:0,25,555 0/0:32,18:50:31.09:0,31,825 0/0:15,3:18:7.77:0,8,434 0/1:16,6:22:24.06:24,0,323 0/1:12,6:18:35.84:36,0,233 0/1:11,6:17:12.23:12,0,263 0/0:24,13:37:10.91:0,11,695 0/1:22,9:31:33.27:33,0,541 0/0:15,4:20:36.11:0,36,454 0/1:35,36:72:13.89:14,0,945 0/0:18,12:30:43.68:0,44,488 0/0:24,15:39:54.18:0,54,728 0/1:17,9:26:9.05:9,0,507 0/1:11,5:17:7.49:7,0,225 0/1:17,3:20:21.75:22,0,410 0/1:6,11:17:60.60:61,0,190 0/1:13,9:22:7.15:7,0,429 0/0:16,4:20:45.14:0,45,562 0/0:28,6:34:40.48:0,40,748 0/0:19,6:25:54.16:0,54,662 0/0:11,7:18:2.38:0,2,246 0/0:9,7:16:0.87:7,0,234 0/1:14,7:21:29.58:30,0,285 0/0:23,5:28:55.68:0,56,616 0/1:18,8:26:72.85:73,0,438 0/0:12,6:18:30.09:0,30,373 0/0:14,7:21:39.12:0,39,471 0/0:8,10:18:15.05:0,15,190 0/0:14,5:19:7.56:0,8,405 11 1858479 . G A 291.18 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.047;DP=880;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7175;InbreedingCoeff=-0.0245;MQ=58.58;MQ0=0;MQRankSum=0.806;QD=8.56;ReadPosRankSum=1.186 GT:AD:DP:GQ:PL 0/0:22,0:22:66.16:0,66,759 0/0:18,0:19:54.15:0,54,627 0/0:16,0:16:48.13:0,48,558 0/0:30,0:30:87.28:0,87,1121 0/0:42,0:42:99:0,114,1487 0/0:32,0:32:90.27:0,90,1130 0/0:32,0:32:90.28:0,90,1175 0/0:14,0:14:39.13:0,39,506 0/1:13,8:21:99:219,0,402 0/1:7,6:13:99:135,0,191 0/0:14,0:14:42.10:0,42,474 0/0:17,0:17:51.14:0,51,601 0/0:17,0:17:48.15:0,48,581 0/0:28,0:28:72.21:0,72,861 0/0:49,0:50:99:0,129,1527 0/0:15,0:15:42.10:0,42,476 0/0:16,0:16:48.14:0,48,569 0/0:18,0:18:54.14:0,54,633 0/0:27,0:27:81.22:0,81,958 0/0:20,0:20:57.17:0,57,682 0/0:26,0:26:75.22:0,75,885 0/0:20,0:20:60.17:0,60,697 0/0:40,1:41:84.26:0,84,1518 0/0:17,0:17:45.14:0,45,591 0/0:25,0:25:69.22:0,69,914 0/0:24,0:24:72.23:0,72,935 0/0:8,0:8:24.06:0,24,272 0/0:19,0:19:54.16:0,54,651 0/0:16,0:16:48.14:0,48,573 0/0:16,0:16:48.11:0,48,528 0/0:16,0:16:48.14:0,48,562 0/0:22,0:22:57.13:0,57,662 0/0:12,0:12:36.11:0,36,437 0/0:19,0:19:57.16:0,57,679 0/0:21,0:21:63.17:0,63,732 0/0:17,0:17:51.15:0,51,614 0/0:27,0:27:69.21:0,69,836 0/0:17,0:17:48.14:0,48,564 0/0:12,0:12:33.07:0,33,386 0/0:16,0:16:45.12:0,45,520 0/0:12,0:12:33.10:0,33,393 0/0:14,0:14:39.12:0,39,485 11 1858572 . C T 6318.04 . AC=40;AF=0.476;AN=84;BaseQRankSum=-4.111;DP=507;Dels=0.00;FS=0.757;HRun=0;HaplotypeScore=0.6313;InbreedingCoeff=0.0391;MQ=57.91;MQ0=0;MQRankSum=-0.996;QD=18.64;ReadPosRankSum=-0.835 GT:AD:DP:GQ:PL 0/1:2,1:4:24.58:29,0,25 1/1:0,7:8:21.06:248,21,0 1/1:0,12:12:33.08:375,33,0 0/0:31,0:31:90.24:0,90,1101 0/0:16,0:16:42.11:0,42,507 0/1:8,8:16:99:218,0,242 0/1:6,4:10:99:117,0,182 0/0:11,1:12:33.10:0,33,419 0/1:3,3:8:77.54:81,0,78 1/1:0,9:9:27.07:302,27,0 0/0:10,0:11:27.08:0,27,315 0/1:3,9:12:58.49:271,0,58 0/1:6,2:8:46.73:47,0,157 0/1:7,4:11:75.67:76,0,211 0/1:13,18:31:99:494,0,321 0/1:12,10:23:99:270,0,348 0/0:6,0:6:15.04:0,15,173 0/0:7,0:7:18.05:0,18,204 0/1:9,14:23:99:397,0,220 1/1:0,11:12:30.09:353,30,0 0/0:7,0:7:21.05:0,21,238 0/0:14,0:14:36.10:0,36,420 0/0:23,0:23:66.21:0,66,834 0/1:6,4:10:99:114,0,187 0/1:5,5:11:99:143,0,161 0/1:6,5:11:99:137,0,165 0/1:2,5:7:58.32:114,0,58 0/0:11,0:11:33.09:0,33,385 1/1:0,6:6:18.05:209,18,0 0/1:5,7:12:81.98:191,0,82 0/1:5,6:11:99:166,0,127 0/0:17,0:17:48.13:0,48,554 0/0:13,0:13:36.09:0,36,408 1/1:0,8:8:24.07:275,24,0 0/1:4,4:8:99:116,0,110 1/1:1,5:6:15.04:172,15,0 0/1:7,8:16:99:237,0,172 0/1:3,4:7:86.69:108,0,87 0/1:4,4:9:99:106,0,120 1/1:0,10:10:24.06:272,24,0 1/1:0,6:6:18.05:211,18,0 1/1:0,14:14:42.11:468,42,0 11 1908481 . A G 67.10 . 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T C 3452.16 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.279;DP=6425;DS;Dels=0.00;FS=61.364;HRun=0;HaplotypeScore=3.4313;InbreedingCoeff=-0.0120;MQ=59.34;MQ0=0;MQRankSum=0.025;QD=14.38;ReadPosRankSum=5.697 GT:AD:DP:GQ:PL 0/0:137,0:137:99:0,361,4465 0/0:122,2:124:99:0,262,3755 0/0:115,0:115:99:0,301,3746 0/0:243,0:243:99:0,671,8340 0/0:217,0:217:99:0,563,7148 0/0:200,0:200:99:0,539,6914 0/0:232,0:232:99:0,605,7613 0/0:209,1:210:99:0,522,6926 0/0:108,0:108:99:0,262,3287 0/0:103,0:103:99:0,256,3150 0/0:121,0:121:99:0,307,3828 0/0:116,0:116:99:0,292,3674 0/0:104,0:104:99:0,277,3359 0/0:115,0:115:99:0,304,3744 0/0:232,0:232:99:0,617,7520 0/0:109,0:109:99:0,292,3553 0/0:120,0:120:99:0,313,3853 0/0:117,0:117:99:0,301,3735 0/0:235,0:236:99:0,605,7504 0/0:235,0:235:99:0,587,7384 0/0:219,0:220:99:0,545,6866 0/0:121,0:122:99:0,322,3964 0/1:121,119:240:99:3452,0,3667 0/0:211,0:212:99:0,539,6890 0/0:211,0:212:99:0,554,7008 0/0:215,0:215:99:0,539,6841 0/0:88,0:88:99:0,229,2799 0/0:107,0:107:99:0,283,3480 0/0:110,0:110:99:0,286,3579 0/0:123,0:123:99:0,319,3921 0/0:103,0:103:99:0,274,3387 0/0:229,0:229:99:0,557,7098 0/0:150,0:150:99:0,379,4752 0/0:122,0:122:99:0,316,3932 0/0:92,0:92:99:0,241,3005 0/0:134,0:134:99:0,337,4247 0/0:229,0:229:99:0,527,6751 0/0:117,0:117:99:0,310,3765 0/0:82,0:83:99:0,226,2747 0/0:119,0:120:99:0,298,3727 0/0:98,0:98:99:0,259,3177 0/0:105,0:105:99:0,280,3470 11 1977552 . G A 14066.47 . AC=12;AF=0.143;AN=84;BaseQRankSum=-5.620;DP=3345;DS;Dels=0.00;FS=3.451;HRun=0;HaplotypeScore=2.9455;InbreedingCoeff=0.0278;MQ=59.42;MQ0=0;MQRankSum=1.317;QD=16.61;ReadPosRankSum=-1.065 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,144,1700 0/0:61,0:64:99:0,153,1850 0/0:53,0:53:99:0,147,1658 0/0:135,0:135:99:0,358,4469 0/0:132,0:133:99:0,334,4230 0/0:106,0:106:99:0,289,3539 0/0:80,0:80:99:0,220,2721 0/0:119,0:120:99:0,325,4033 0/0:61,0:63:99:0,144,1700 0/0:55,0:55:99:0,147,1718 0/0:68,0:68:99:0,174,2046 0/0:46,0:46:99:0,123,1441 0/0:46,1:48:73.92:0,74,1182 0/0:51,0:51:99:0,138,1567 0/0:177,0:179:99:0,418,4986 0/0:51,0:51:99:0,129,1517 0/0:53,0:54:99:0,126,1528 0/0:61,0:63:99:0,162,1883 0/0:97,0:109:99:0,222,2544 0/0:134,0:136:99:0,352,4163 1/1:1,131:137:99:4125,355,0 0/1:43,41:86:99:1067,0,1133 0/0:130,0:131:99:0,340,4276 0/0:92,0:92:99:0,238,2918 0/0:101,0:102:99:0,274,3329 0/1:49,41:93:99:1117,0,1329 0/0:37,0:38:99:0,99,1147 0/1:25,33:58:99:900,0,608 0/1:20,24:44:99:668,0,511 0/0:53,0:54:99:0,132,1569 0/0:50,0:51:99:0,123,1437 0/1:53,80:135:99:2135,0,1232 0/0:76,0:76:99:0,187,2198 0/1:28,38:66:99:1091,0,737 0/1:22,20:43:99:546,0,490 0/0:55,0:56:99:0,132,1528 0/0:100,0:104:99:0,217,2500 0/0:58,0:59:99:0,156,1846 0/0:61,0:61:99:0,162,1865 0/1:28,30:60:99:774,0,714 0/1:36,24:61:99:610,0,922 0/1:27,36:64:99:1035,0,658 11 1977651 . C A 406.64 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.231;DP=695;Dels=0.00;FS=6.907;HRun=1;HaplotypeScore=0.6298;InbreedingCoeff=0.9551;MQ=59.06;MQ0=0;MQRankSum=0.489;QD=25.42;ReadPosRankSum=-2.202 GT:AD:DP:GQ:PL 0/0:14,0:15:42.04:0,42,419 0/0:12,0:12:33.06:0,33,359 0/0:7,0:7:21.05:0,21,222 0/0:26,0:26:72.20:0,72,826 0/0:27,0:27:81.23:0,81,954 0/0:19,0:19:57.10:0,57,629 0/0:14,0:15:39.07:0,39,428 0/0:26,0:26:69.17:0,69,777 0/0:13,0:13:30.05:0,30,309 0/0:8,0:8:24.03:0,24,242 0/0:10,0:10:27.05:0,27,276 0/0:14,0:14:39.08:0,39,404 0/0:7,0:7:18.03:0,18,188 0/0:14,0:14:42.11:0,42,457 0/0:30,0:30:84.14:0,84,864 0/0:29,0:29:87.16:0,87,910 0/0:13,0:13:33.06:0,33,339 0/0:16,0:16:45.09:0,45,464 0/0:26,0:26:75.17:0,75,800 0/0:23,0:23:69.16:0,69,737 0/0:18,0:18:51.12:0,51,539 0/0:17,0:17:45.10:0,45,472 0/0:34,0:34:99:0,99,1138 0/0:14,0:15:42.10:0,42,485 0/0:15,0:15:42.11:0,42,481 0/0:14,0:14:36.10:0,36,408 0/0:11,0:11:30.05:0,30,314 0/0:14,0:14:42.07:0,42,428 0/0:12,0:12:36.09:0,36,385 0/0:14,0:14:39.09:0,39,418 0/0:15,0:15:42.06:0,42,432 0/0:21,0:21:63.10:0,63,648 0/0:22,1:23:25.35:0,25,596 0/0:7,0:7:21.04:0,21,217 0/0:11,0:11:33.07:0,33,350 0/0:10,0:10:24.04:0,24,244 0/0:15,0:16:39.09:0,39,413 0/1:1,15:16:0.15:467,15,0 0/0:23,0:23:63.15:0,63,675 0/0:11,0:11:27.06:0,27,288 0/0:8,0:8:24.03:0,24,239 0/0:20,0:20:57.11:0,57,592 11 2167543 . T G 56794.34 . AC=38;AF=0.452;AN=84;BaseQRankSum=16.171;DP=4298;DS;Dels=0.00;FS=57.434;HRun=0;HaplotypeScore=3.0327;InbreedingCoeff=-0.1533;MQ=58.84;MQ0=0;MQRankSum=1.735;QD=17.30;ReadPosRankSum=0.814 GT:AD:DP:GQ:PL 0/1:27,40:67:99:1140,0,702 0/1:48,40:88:99:1047,0,1337 0/0:74,0:74:99:0,193,2376 0/1:96,91:188:99:2839,0,2696 1/1:0,172:172:99:6335,485,0 0/1:101,63:164:99:1817,0,2898 0/1:75,75:150:99:2084,0,2172 0/0:163,0:163:99:0,454,5721 0/0:67,0:67:99:0,178,2173 0/1:35,29:64:99:821,0,972 0/1:25,26:51:99:664,0,731 0/1:28,28:56:99:811,0,783 0/1:36,31:67:99:828,0,949 1/1:1,67:68:99:2268,156,0 0/1:124,94:218:99:2472,0,3104 0/1:46,28:74:99:803,0,1266 0/1:39,28:67:99:751,0,1136 1/1:0,50:50:99:1779,144,0 0/1:87,84:171:99:2228,0,2500 0/1:88,89:177:99:2258,0,2344 0/1:82,66:148:99:1772,0,2268 0/0:109,0:109:99:0,289,3512 0/0:183,0:183:99:0,509,6274 1/1:0,117:117:99:4257,322,0 0/1:89,68:158:99:1972,0,2544 1/1:1,130:131:99:4383,295,0 1/1:0,40:40:99:1307,105,0 0/1:25,30:55:99:886,0,678 1/1:0,56:56:99:1877,150,0 0/0:55,0:55:99:0,147,1824 0/1:37,24:61:99:680,0,1031 0/1:95,100:195:99:2674,0,2424 0/0:93,1:94:99:0,244,2979 0/0:68,0:68:99:0,190,2323 0/1:28,33:61:99:866,0,758 0/0:81,0:81:99:0,232,2828 0/1:70,82:152:99:2128,0,1952 0/1:29,39:68:99:1102,0,731 0/1:42,35:77:99:1043,0,1221 0/0:69,0:69:99:0,196,2360 0/0:53,0:53:99:0,138,1701 0/1:36,35:71:99:905,0,1023 11 2167572 . G A 655.11 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.071;DP=2950;DS;Dels=0.00;FS=2.055;HRun=0;HaplotypeScore=2.8260;InbreedingCoeff=-0.0120;MQ=58.95;MQ0=0;MQRankSum=-0.833;QD=14.56;ReadPosRankSum=0.258 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,117,1401 0/0:59,0:59:99:0,159,1907 0/0:49,0:49:99:0,132,1555 0/0:156,0:156:99:0,436,5489 0/0:123,0:123:99:0,343,4315 0/0:100,0:100:99:0,274,3447 0/0:87,0:87:99:0,247,3119 0/0:104,0:104:99:0,274,3461 0/0:32,0:32:93.26:0,93,1086 0/0:47,0:48:99:0,138,1590 0/0:40,0:40:99:0,114,1340 0/0:36,0:36:96.25:0,96,1108 0/0:39,1:40:88.64:0,89,1277 0/0:48,0:48:99:0,129,1544 0/0:140,0:141:99:0,382,4520 0/0:67,0:67:99:0,168,2050 0/1:20,25:45:99:701,0,541 0/0:39,0:39:99:0,105,1256 0/0:125,0:128:99:0,325,3842 0/0:117,0:117:99:0,304,3655 0/0:96,0:98:99:0,259,3031 0/0:86,0:86:99:0,238,2754 0/0:156,1:157:99:0,410,5549 0/0:80,0:80:99:0,229,2858 0/0:101,0:101:99:0,280,3496 0/0:75,0:75:99:0,199,2520 0/0:28,0:28:69.21:0,69,832 0/0:30,0:30:87.26:0,87,1031 0/0:39,0:39:99:0,105,1281 0/0:36,0:36:99:0,99,1169 0/0:40,0:40:99:0,108,1241 0/0:130,0:130:99:0,343,4115 0/0:69,0:69:99:0,184,2177 0/0:42,0:42:99:0,120,1392 0/0:49,0:49:99:0,135,1594 0/0:48,0:48:99:0,126,1490 0/0:100,0:102:99:0,256,2992 0/0:51,0:51:99:0,138,1584 0/0:61,0:61:99:0,171,1972 0/0:50,0:50:99:0,138,1606 0/0:34,0:34:87.23:0,87,1027 0/0:41,0:41:99:0,114,1303 11 2167618 . A G 31491.03 . AC=57;AF=0.679;AN=84;BaseQRankSum=15.281;DP=1488;Dels=0.00;FS=6.287;HRun=0;HaplotypeScore=0.8095;InbreedingCoeff=-0.3646;MQ=58.84;MQ0=0;MQRankSum=1.265;QD=21.51;ReadPosRankSum=-1.024 GT:AD:DP:GQ:PL 0/1:15,12:28:99:225,0,376 0/1:15,11:26:99:329,0,397 0/0:23,1:24:28.35:0,28,660 0/1:42,32:74:99:978,0,1134 1/1:0,70:70:99:2505,196,0 1/1:0,34:34:96.30:1242,96,0 0/1:17,12:29:99:365,0,405 0/1:27,36:63:99:1097,0,626 0/1:7,14:24:99:364,0,146 1/1:0,31:31:93.26:1108,93,0 0/1:10,11:21:99:288,0,271 0/1:10,7:17:99:215,0,241 0/1:9,5:15:99:135,0,250 1/1:0,18:18:48.14:582,48,0 1/1:0,73:74:99:2428,199,0 1/1:0,35:35:99:1231,102,0 0/1:16,12:28:99:355,0,445 1/1:0,18:18:51.14:621,51,0 0/1:33,35:69:99:870,0,778 0/1:36,23:59:99:575,0,1015 0/1:34,24:59:99:664,0,911 0/1:14,27:41:99:742,0,346 0/1:36,44:80:99:1268,0,871 1/1:0,41:41:99:1400,111,0 0/1:25,25:52:99:673,0,637 1/1:0,32:32:93.29:1175,93,0 1/1:1,15:16:45.14:549,45,0 0/1:8,10:18:99:305,0,213 1/1:0,19:19:57.15:664,57,0 0/1:11,9:20:99:263,0,303 0/1:11,6:17:99:182,0,303 1/1:0,59:59:99:1856,156,0 1/1:0,42:42:99:1353,114,0 0/1:9,11:20:99:304,0,227 1/1:0,23:23:60.18:735,60,0 0/1:7,22:29:99:624,0,161 1/1:0,46:46:99:1528,132,0 0/1:10,8:18:99:198,0,240 1/1:0,22:22:60.17:725,60,0 0/1:17,12:29:99:374,0,456 0/1:16,6:22:99:135,0,437 0/1:16,10:26:99:260,0,436 11 2167641 . C T 555.66 . AC=4;AF=0.048;AN=84;BaseQRankSum=-6.275;DP=1058;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8173;InbreedingCoeff=-0.0500;MQ=58.81;MQ0=0;MQRankSum=1.636;QD=7.94;ReadPosRankSum=-0.988 GT:AD:DP:GQ:PL 0/0:21,0:22:57.18:0,57,722 0/0:16,0:16:42.13:0,42,523 0/0:18,0:18:54.17:0,54,676 0/0:48,0:48:99:0,129,1687 0/0:49,0:49:99:0,141,1873 0/0:17,0:17:48.14:0,48,620 0/0:21,0:21:60.19:0,60,789 0/0:41,0:41:99:0,117,1553 0/1:15,5:20:99:99,0,508 0/0:25,0:25:75.24:0,75,941 0/1:8,7:15:99:202,0,230 0/0:16,0:16:48.15:0,48,591 0/0:13,0:13:36.10:0,36,431 0/0:14,0:14:39.11:0,39,473 0/0:50,0:50:99:0,144,1788 0/0:20,0:20:57.17:0,57,710 0/0:18,0:18:54.17:0,54,673 0/0:20,0:20:60.17:0,60,737 0/0:50,0:50:99:0,132,1629 0/0:48,0:48:99:0,141,1747 0/0:35,0:35:99:0,105,1283 0/0:31,0:31:87.26:0,87,1073 0/0:60,0:60:99:0,163,2169 0/0:28,0:28:78.26:0,78,1058 0/0:32,0:32:90.30:0,90,1215 0/0:19,0:19:57.18:0,57,749 0/0:13,0:13:39.12:0,39,479 0/0:10,0:10:30.09:0,30,363 0/0:13,0:13:36.11:0,36,453 0/0:14,0:14:42.13:0,42,516 0/0:12,0:12:36.12:0,36,459 0/0:43,0:43:99:0,117,1480 0/0:32,0:32:84.25:0,84,1069 0/1:9,7:16:99:191,0,234 0/0:17,0:17:48.15:0,48,602 0/1:13,6:19:99:151,0,411 0/0:33,0:33:99:0,99,1212 0/0:14,0:14:39.12:0,39,475 0/0:20,0:20:60.19:0,60,744 0/0:22,0:22:66.20:0,66,818 0/0:18,0:18:54.16:0,54,655 0/0:16,0:16:45.14:0,45,557 11 2188166 . G T 61.96 . AC=8;AF=0.100;AN=80;BaseQRankSum=-5.634;DP=345;Dels=0.00;FS=57.346;HRun=1;HaplotypeScore=0.2917;InbreedingCoeff=-0.1653;MQ=58.93;MQ0=0;MQRankSum=0.220;QD=0.91;ReadPosRankSum=-3.245 GT:AD:DP:GQ:PL 0/1:9,2:11:29.86:30,0,238 0/0:5,1:6:8.50:0,8,112 0/0:4,0:4:12.03:0,12,145 0/0:22,5:27:37.44:0,37,659 0/0:13,1:14:2.48:0,2,322 0/0:13,1:14:27.07:0,27,315 0/0:8,0:8:18.05:0,18,215 0/0:10,0:10:18.05:0,18,212 0/1:8,1:9:6.65:7,0,141 0/0:2,1:3:6.01:0,6,63 0/0:2,1:3:3.01:0,3,38 ./. 0/0:5,0:5:3.01:0,3,39 0/0:4,1:5:6.02:0,6,83 0/1:18,4:22:12.08:12,0,460 0/0:12,1:13:1.37:4,0,289 0/0:2,2:4:5.91:0,6,50 0/0:2,1:3:6:0,6,59 0/0:12,2:14:25.61:0,26,274 0/0:12,2:14:3.39:0,3,278 0/0:5,0:5:12.03:0,12,135 0/0:5,1:6:12.02:0,12,140 0/0:13,2:15:30.06:0,30,362 0/0:7,0:7:12.03:0,12,131 0/0:13,0:13:36.09:0,36,433 0/1:6,1:7:19.75:20,0,157 0/0:5,1:6:12.03:0,12,129 0/1:2,1:3:17.66:18,0,60 0/0:6,0:6:15.01:0,15,153 0/0:7,0:7:18.06:0,18,226 0/0:7,0:7:15.03:0,15,166 0/0:7,1:8:18.06:0,18,232 0/0:9,1:10:27.08:0,27,322 0/0:10,1:11:27.08:0,27,328 0/0:5,1:6:15.04:0,15,186 0/0:5,1:6:6.02:0,6,70 0/1:9,2:11:47.63:48,0,152 0/1:1,1:2:20.67:21,0,24 0/0:8,2:10:21.06:0,21,259 ./. 0/1:2,1:3:15.69:16,0,52 0/0:5,0:5:15.05:0,15,185 11 2188238 . C T 3190.54 . AC=29;AF=0.354;AN=82;BaseQRankSum=-5.973;DP=333;Dels=0.00;FS=2.546;HRun=2;HaplotypeScore=0.5390;InbreedingCoeff=0.0190;MQ=58.59;MQ0=0;MQRankSum=0.577;QD=15.64;ReadPosRankSum=-0.167 GT:AD:DP:GQ:PL 0/1:5,3:8:87.55:88,0,171 0/1:4,2:6:57.54:58,0,130 0/0:7,0:7:21.07:0,21,268 0/0:24,0:24:54.18:0,54,744 0/0:12,0:12:33.10:0,33,435 0/0:5,0:5:15.05:0,15,204 0/0:10,0:10:24.08:0,24,315 0/0:5,0:5:12.04:0,12,165 ./. 1/1:0,3:3:9.03:113,9,0 0/0:2,0:2:6.02:0,6,74 0/0:6,0:6:18.06:0,18,225 0/1:3,2:5:62.11:62,0,99 0/0:5,0:5:12.04:0,12,160 0/1:18,18:36:99:495,0,485 0/1:6,6:12:99:166,0,166 0/0:8,0:8:24.08:0,24,298 1/1:0,1:1:3.01:30,3,0 1/1:0,14:14:30.09:377,30,0 1/1:0,10:10:24.07:311,24,0 0/0:14,0:14:33.10:0,33,416 0/1:6,4:10:99:111,0,158 0/1:6,7:13:99:167,0,171 0/0:7,0:7:18.06:0,18,237 0/0:7,0:7:18.06:0,18,245 0/1:6,2:8:57.52:58,0,178 0/0:3,0:3:9.03:0,9,115 0/0:2,0:2:6.02:0,6,77 0/0:1,0:1:3.01:0,3,38 0/1:2,1:3:30.96:32,0,31 0/1:7,1:8:13.72:14,0,239 0/1:4,4:8:94.12:122,0,94 1/1:0,10:10:24.08:309,24,0 0/1:3,3:6:90.82:91,0,98 1/1:0,9:9:24.07:300,24,0 0/1:2,3:5:61.25:96,0,61 0/1:4,5:10:99:154,0,128 0/0:3,0:3:9.03:0,9,113 0/1:3,4:7:82.36:127,0,82 0/0:8,0:8:21.07:0,21,262 0/1:6,1:7:17.52:18,0,195 0/1:2,3:5:61.09:96,0,61 11 2189806 . G A 125.36 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.379;DP=558;Dels=0.00;FS=3.861;HRun=1;HaplotypeScore=0.4931;InbreedingCoeff=-0.0196;MQ=58.93;MQ0=0;MQRankSum=0.361;QD=10.45;ReadPosRankSum=1.015 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,279 0/0:12,0:12:36.08:0,36,392 0/0:6,0:6:18.05:0,18,202 0/0:38,0:38:96.30:0,96,1209 0/0:43,0:43:99:0,120,1481 0/0:13,0:13:39.11:0,39,461 0/0:16,0:16:48.15:0,48,594 0/0:20,0:20:48.14:0,48,603 0/0:8,0:8:21.06:0,21,248 0/0:12,0:12:33.09:0,33,378 0/0:6,0:6:18.05:0,18,203 0/0:8,0:8:24.07:0,24,275 0/0:4,0:4:12.02:0,12,129 0/0:7,0:7:21.06:0,21,248 0/0:27,1:28:69.17:0,69,803 0/0:7,0:7:21.06:0,21,240 0/0:14,0:14:39.11:0,39,463 0/0:2,0:2:3.01:0,3,36 0/0:10,0:10:30.08:0,30,334 0/0:12,0:12:33.09:0,33,379 0/0:10,0:10:24.05:0,24,265 0/0:11,0:11:27.08:0,27,327 0/0:49,0:49:99:0,141,1711 0/0:16,0:16:39.11:0,39,467 0/0:38,0:38:99:0,102,1239 0/0:18,0:18:45.12:0,45,538 0/0:7,0:7:18.05:0,18,216 0/0:7,0:7:21.05:0,21,234 0/0:7,0:7:18.05:0,18,217 0/0:9,0:9:27.07:0,27,305 0/0:8,0:8:24.06:0,24,268 0/0:14,0:14:39.11:0,39,457 0/1:6,6:12:99:171,0,170 0/0:9,0:9:21.06:0,21,265 0/0:10,0:10:24.07:0,24,291 0/0:8,0:8:21.06:0,21,244 0/0:8,0:8:21.06:0,21,246 0/0:14,0:14:42.07:0,42,442 0/0:11,0:11:30.09:0,30,366 0/0:9,0:9:27.08:0,27,322 0/0:4,0:4:12.03:0,12,135 0/0:5,0:5:15.03:0,15,163 11 2323291 . G T 4.29 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.241;DP=436;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.3741;InbreedingCoeff=-0.0189;MQ=58.61;MQ0=0;MQRankSum=0.622;QD=0.54;ReadPosRankSum=0.268 GT:AD:DP:GQ:PL 0/0:11,0:11:30.08:0,30,354 0/0:10,0:10:27.06:0,27,318 0/1:6,2:8:48.42:48,0,165 0/0:11,0:11:33.10:0,33,417 0/0:20,0:20:51.16:0,51,666 0/0:2,0:2:6.01:0,6,62 0/0:10,0:10:24.07:0,24,312 0/0:8,0:8:21.07:0,21,287 0/0:9,0:9:27.06:0,27,329 0/0:11,0:11:33.09:0,33,383 0/0:12,0:12:33.10:0,33,406 0/0:9,0:9:24.08:0,24,297 0/0:10,0:10:30.09:0,30,365 0/0:7,0:7:21.06:0,21,256 0/0:22,0:22:57.18:0,57,718 0/0:11,0:11:30.09:0,30,367 0/0:11,0:11:33.10:0,33,409 0/0:13,0:13:33.10:0,33,403 0/0:14,0:14:36.10:0,36,423 0/0:20,0:20:54.16:0,54,668 0/0:13,0:14:39.12:0,39,481 0/0:12,0:12:36.12:0,36,462 0/0:8,0:8:24.07:0,24,302 0/0:5,0:5:15.03:0,15,185 0/0:3,0:3:9.03:0,9,115 0/0:5,0:5:15.05:0,15,197 0/0:10,0:10:27.08:0,27,334 0/0:11,0:11:30.08:0,30,367 0/0:10,0:10:21.07:0,21,269 0/0:7,0:7:21.06:0,21,247 0/0:7,0:7:15.05:0,15,185 0/0:21,0:21:48.15:0,48,632 0/0:9,0:9:27.07:0,27,311 0/0:4,1:5:12.04:0,12,151 0/0:6,0:6:18.05:0,18,216 0/0:13,0:13:24.08:0,24,327 0/0:13,0:13:36.11:0,36,449 0/0:10,0:10:27.08:0,27,342 0/0:10,0:10:30.09:0,30,371 0/0:13,0:13:36.05:0,36,400 0/0:7,0:7:21.07:0,21,259 0/0:8,0:8:21.06:0,21,253 11 2432964 . T C 15607.66 . AC=30;AF=0.357;AN=84;BaseQRankSum=-13.528;DP=1595;Dels=0.00;FS=2.822;HRun=1;HaplotypeScore=2.0638;InbreedingCoeff=0.1704;MQ=58.91;MQ0=0;MQRankSum=0.078;QD=17.25;ReadPosRankSum=1.070 GT:AD:DP:GQ:PL 0/1:14,14:28:99:324,0,366 0/0:29,0:29:78.21:0,78,914 0/0:31,0:32:81.24:0,81,967 1/1:0,77:77:99:2185,195,0 1/1:0,53:53:99:1534,141,0 1/1:0,37:38:93.24:1087,93,0 1/1:0,33:33:87.18:937,87,0 0/1:24,20:44:99:369,0,677 1/1:0,33:33:84.15:903,84,0 1/1:0,22:22:60.13:627,60,0 1/1:1,36:37:63.59:961,64,0 0/1:16,19:36:99:480,0,439 0/0:31,0:31:78.23:0,78,932 0/1:10,11:21:99:260,0,255 0/0:87,0:87:99:0,235,2764 0/0:26,0:26:63.17:0,63,744 0/0:32,0:32:87.27:0,87,1067 0/1:19,20:40:99:507,0,514 0/1:16,28:44:99:604,0,397 0/0:66,0:67:99:0,159,1880 0/1:33,29:62:99:741,0,752 0/1:18,24:42:99:554,0,434 0/1:42,36:78:99:902,0,1144 0/0:47,0:47:99:0,126,1522 0/0:32,0:33:81.23:0,81,963 0/0:42,0:43:99:0,102,1196 0/0:15,0:15:42.11:0,42,488 0/1:20,14:34:99:357,0,500 0/1:12,14:26:99:350,0,317 0/0:24,0:24:72.19:0,72,832 0/1:13,19:33:99:453,0,301 0/1:18,26:44:99:618,0,503 0/0:41,0:41:99:0,105,1258 0/0:27,0:27:78.22:0,78,921 0/0:19,0:21:48.15:0,48,583 0/0:33,0:33:93.26:0,93,1076 0/0:45,0:46:99:0,108,1277 0/1:16,10:26:99:258,0,430 0/1:10,12:22:99:274,0,287 0/0:28,0:29:78.19:0,78,908 0/0:27,0:27:72.19:0,72,836 0/1:16,15:32:99:323,0,488 11 2435946 . A G 1947.74 . AC=54;AF=0.818;AN=66;BaseQRankSum=-1.622;DP=83;Dels=0.00;FS=1.447;HRun=0;HaplotypeScore=0.3906;InbreedingCoeff=0.1181;MQ=54.73;MQ0=0;MQRankSum=0.373;QD=24.97;ReadPosRankSum=-2.053 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:0,1:1:3.01:33,3,0 1/1:0,4:4:9.03:103,9,0 1/1:0,1:1:3.01:33,3,0 1/1:0,1:1:3.01:37,3,0 1/1:0,2:2:3.01:34,3,0 1/1:0,2:2:6.01:62,6,0 ./. 1/1:0,2:2:6.01:60,6,0 0/1:1,1:2:1.76:0,3,28 ./. 1/1:0,3:3:9.02:95,9,0 1/1:0,1:1:3.01:33,3,0 0/1:1,1:2:27.42:27,0,31 0/1:2,1:3:22.53:23,0,60 1/1:0,5:5:15.04:167,15,0 1/1:0,2:2:6.02:64,6,0 1/1:0,3:3:9.01:92,9,0 1/1:0,2:2:3.01:32,3,0 0/1:1,2:3:27.95:57,0,28 1/1:0,1:1:3.01:32,3,0 ./. 0/0:1,0:1:3.01:0,3,37 ./. 1/1:0,4:4:12.03:124,12,0 1/1:0,1:1:3.01:39,3,0 1/1:0,3:3:6.02:76,6,0 ./. ./. 1/1:0,6:6:18.04:196,18,0 1/1:0,3:3:8.98:78,9,0 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.02:0,6,69 1/1:0,5:5:15.02:151,15,0 1/1:0,3:3:9.02:102,9,0 1/1:0,2:2:6.02:67,6,0 1/1:0,4:4:12.03:135,12,0 0/1:1,1:2:27.42:27,0,32 1/1:0,1:1:3.01:30,3,0 0/1:2,2:4:28.77:63,0,29 11 2435956 . C T 1443.56 . AC=33;AF=0.516;AN=64;BaseQRankSum=1.319;DP=88;Dels=0.00;FS=3.183;HRun=0;HaplotypeScore=0.3730;InbreedingCoeff=0.1138;MQ=55.50;MQ0=0;MQRankSum=-0.781;QD=22.91;ReadPosRankSum=0.602 GT:AD:DP:GQ:PL ./. 0/0:2,0:2:6.02:0,6,69 ./. 0/1:1,0:1:1.76:0,3,27 0/0:4,0:4:9.03:0,9,121 0/0:1,0:1:3.01:0,3,36 1/1:0,1:1:3.01:40,3,0 0/1:1,1:2:30.11:33,0,30 0/0:3,0:3:6.02:0,6,76 ./. ./. 0/0:1,0:1:3.01:0,3,32 ./. 1/1:0,3:3:9.03:109,9,0 0/1:1,1:2:25.53:27,0,26 0/0:4,0:4:12.03:0,12,137 0/1:3,2:5:60.51:61,0,89 0/1:1,4:5:21.93:131,0,22 0/1:1,1:2:31.78:32,0,33 1/1:0,1:1:3.01:38,3,0 0/0:2,0:2:6.02:0,6,73 0/0:4,0:4:12.04:0,12,152 0/1:1,2:3:32.20:69,0,32 ./. 0/0:2,0:2:6.02:0,6,77 ./. 1/1:0,4:4:12.03:135,12,0 1/1:0,1:1:3.01:38,3,0 0/1:1,2:3:22.52:66,0,23 ./. ./. 1/1:0,5:5:12.04:146,12,0 1/1:0,3:3:9:98,9,0 ./. 0/0:2,0:2:6.01:0,6,60 1/1:0,5:5:15.05:185,15,0 1/1:0,2:2:6.02:75,6,0 1/1:0,2:2:6.01:64,6,0 0/1:2,2:4:62.74:63,0,65 0/1:1,1:2:27.42:27,0,31 1/1:0,2:2:6.02:70,6,0 0/1:2,3:5:56.96:97,0,57 11 2435984 . G C 20.86 . AC=5;AF=0.100;AN=50;BaseQRankSum=-2.202;DP=92;Dels=0.00;FS=9.507;HRun=1;HaplotypeScore=0.0897;InbreedingCoeff=-0.0496;MQ=56.39;MQ0=0;MQRankSum=0.156;QD=1.30;ReadPosRankSum=-0.311 GT:AD:DP:GQ:PL 0/0:3,0:3:9.01:0,9,91 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:3.01:0,3,31 ./. 0/0:2,2:4:6.02:0,6,71 ./. ./. ./. ./. ./. ./. 0/0:2,0:2:3.01:0,3,36 ./. ./. 0/0:2,0:2:6.02:0,6,70 0/0:4,2:6:12.03:0,12,140 0/0:2,3:5:6.02:0,6,75 ./. 0/1:2,1:3:18.64:19,0,58 0/0:4,0:4:12.02:0,12,122 1/1:0,2:2:3.01:38,3,0 0/0:5,1:6:9.01:0,9,99 0/0:3,2:5:3.01:0,3,33 0/0:1,0:1:3.01:0,3,31 0/0:3,0:3:3:0,3,29 ./. 0/1:3,2:5:16.62:17,0,91 0/0:1,0:1:3.01:0,3,33 ./. ./. 0/0:2,0:2:3.01:0,3,32 0/0:6,1:7:18.02:0,18,194 0/0:3,0:3:5.99:0,6,51 ./. ./. 0/0:2,3:5:6.02:0,6,75 0/0:3,0:3:6.02:0,6,64 0/0:2,0:2:6.01:0,6,64 0/1:3,3:6:21.40:21,0,89 ./. ./. 0/0:2,1:3:6.02:0,6,70 11 2436049 . G C 14.56 . AC=4;AF=0.051;AN=78;BaseQRankSum=-2.400;DP=197;Dels=0.00;FS=62.517;HRun=1;HaplotypeScore=0.3287;InbreedingCoeff=-0.1130;MQ=57.93;MQ0=0;MQRankSum=-1.237;QD=0.81;ReadPosRankSum=-3.632 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,74 ./. 0/0:3,1:4:9.03:0,9,105 0/0:7,2:9:21.07:0,21,279 0/0:14,3:17:42.05:0,42,515 0/0:4,1:5:12.04:0,12,151 0/0:5,0:5:12.04:0,12,158 0/0:2,1:3:3.01:0,3,39 0/0:4,1:5:12.04:0,12,145 0/0:3,0:3:9.03:0,9,110 0/1:3,1:4:20.46:20,0,103 0/0:3,1:4:9.03:0,9,111 0/0:1,2:3:3.01:0,3,31 0/0:9,1:10:24.07:0,24,286 0/0:6,1:7:15.05:0,15,184 0/0:5,0:5:15.05:0,15,193 0/0:2,0:2:5.99:0,6,55 0/0:2,1:3:6.01:0,6,66 0/0:3,1:4:9.02:0,9,96 0/0:4,3:7:9.03:0,9,116 0/0:2,0:2:6.01:0,6,63 0/0:7,2:9:21.03:0,21,235 0/0:6,0:6:15.03:0,15,172 0/1:5,1:6:12.55:13,0,160 0/1:2,3:5:32.56:33,0,34 0/0:2,0:2:6.02:0,6,82 0/0:4,2:6:9.03:0,9,112 ./. 0/1:2,1:3:29.23:29,0,30 0/0:2,1:3:6.02:0,6,73 ./. 0/0:5,4:9:15.04:0,15,183 0/0:6,0:6:18.03:0,18,188 0/0:3,0:3:9.03:0,9,113 0/0:4,1:5:10.27:0,10,116 0/0:5,2:7:15.04:0,15,177 0/0:4,1:5:12.04:0,12,149 0/0:1,1:2:3.01:0,3,39 0/0:5,0:5:15.04:0,15,178 0/0:1,0:1:3.01:0,3,35 0/0:3,0:3:9.03:0,9,110 0/0:4,1:5:12.03:0,12,142 11 2438963 . C A 1398.95 . AC=8;AF=0.095;AN=84;BaseQRankSum=-1.793;DP=572;Dels=0.00;FS=22.379;HRun=1;HaplotypeScore=0.5962;InbreedingCoeff=-0.1086;MQ=58.93;MQ0=0;MQRankSum=2.219;QD=12.95;ReadPosRankSum=-0.420 GT:AD:DP:GQ:PL 0/0:13,0:13:39.12:0,39,486 0/0:12,0:12:27.09:0,27,356 0/0:8,0:8:21.07:0,21,274 0/0:11,0:11:21.07:0,21,295 0/0:20,0:20:54.17:0,54,704 0/1:2,7:9:62.39:186,0,62 0/0:6,0:6:15.05:0,15,208 0/1:7,5:12:99:130,0,212 0/0:11,0:11:30.10:0,30,382 0/0:14,0:14:36.12:0,36,468 0/0:14,0:14:39.11:0,39,469 0/0:16,0:16:42.13:0,42,526 0/0:20,0:20:51.16:0,51,642 0/0:13,0:13:24.07:0,24,309 0/0:44,0:44:99:0,105,1350 0/0:12,0:12:33.06:0,33,378 0/0:6,0:6:18.06:0,18,223 0/0:7,0:7:18.05:0,18,219 0/0:21,0:21:57.15:0,57,673 0/0:23,0:23:57.18:0,57,712 0/1:20,7:27:99:184,0,444 0/1:5,10:15:99:281,0,118 0/0:10,0:10:24.08:0,24,333 0/0:7,0:7:15.04:0,15,196 0/0:9,0:9:24.08:0,24,323 0/0:5,0:5:12.04:0,12,165 0/0:18,0:18:45.14:0,45,586 0/0:15,0:15:36.12:0,36,466 0/1:7,6:13:99:150,0,201 0/0:6,0:6:18.06:0,18,222 0/0:12,0:12:33.10:0,33,416 0/0:16,0:16:39.12:0,39,508 0/0:13,0:13:36.11:0,36,456 0/1:4,9:13:79.42:266,0,79 0/1:3,3:6:96.89:97,0,98 0/0:14,0:14:39.11:0,39,477 0/0:12,0:12:27.09:0,27,352 0/0:19,0:19:42.12:0,42,528 0/1:5,8:13:99:227,0,114 0/0:14,0:14:39.12:0,39,494 0/0:6,0:6:15.05:0,15,186 0/0:17,0:17:45.13:0,45,547 11 2439767 . T C 7922.50 . AC=34;AF=0.405;AN=84;BaseQRankSum=9.820;DP=698;Dels=0.00;FS=1.301;HRun=0;HaplotypeScore=0.6176;InbreedingCoeff=-0.0001;MQ=58.89;MQ0=0;MQRankSum=0.040;QD=17.80;ReadPosRankSum=-1.373 GT:AD:DP:GQ:PL 0/1:6,6:12:99:158,0,159 0/1:7,5:12:99:148,0,214 0/0:19,0:19:45.14:0,45,562 0/0:35,0:35:90.26:0,90,1084 0/0:30,0:30:90.25:0,90,1070 0/0:12,0:12:33.09:0,33,408 0/1:5,6:11:99:173,0,150 0/0:27,0:27:66.19:0,66,818 0/0:8,0:8:24.07:0,24,283 0/0:12,0:12:30.09:0,30,362 0/0:12,0:12:27.08:0,27,340 0/0:14,0:14:42.13:0,42,502 0/0:10,0:10:27.08:0,27,331 0/1:9,3:12:75.40:75,0,281 0/1:22,9:31:99:165,0,640 0/0:13,0:13:33.10:0,33,412 0/1:8,10:18:99:289,0,215 0/1:6,11:17:99:282,0,165 0/1:7,12:20:99:369,0,174 0/1:11,6:17:99:165,0,291 0/1:13,10:24:99:254,0,411 0/0:20,0:20:48.14:0,48,579 0/1:17,27:44:99:802,0,484 0/1:11,5:16:99:129,0,305 0/0:18,0:18:45.13:0,45,546 1/1:0,16:16:36.11:483,36,0 0/1:8,3:11:73.44:73,0,258 1/1:0,7:7:21.07:266,21,0 0/0:13,0:13:33.10:0,33,407 1/1:0,11:11:27.09:349,27,0 0/1:10,9:19:99:186,0,285 1/1:0,26:26:63.20:827,63,0 1/1:1,14:15:6.62:417,7,0 0/1:9,6:15:99:188,0,264 0/0:10,0:10:27.08:0,27,323 0/1:4,5:9:99:163,0,118 1/1:0,24:24:72.18:846,72,0 1/1:0,8:8:24.07:294,24,0 0/1:5,4:9:99:125,0,121 0/1:3,11:14:68.71:307,0,69 0/1:6,9:15:99:227,0,178 0/1:6,6:12:99:161,0,159 11 3111116 . C G 59.35 . AC=5;AF=0.086;AN=58;BaseQRankSum=-2.968;DP=139;Dels=0.00;FS=22.595;HRun=2;HaplotypeScore=0.1088;InbreedingCoeff=-0.0373;MQ=57.46;MQ0=0;MQRankSum=-1.036;QD=1.85;ReadPosRankSum=-2.202 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:1,7:8:6:61,6,0 0/0:3,1:4:6.02:0,6,80 ./. 0/0:1,2:3:3.01:0,3,41 0/0:1,2:3:3:0,3,27 0/0:2,0:2:3.01:0,3,32 0/0:1,0:1:3.01:0,3,36 ./. 0/0:3,3:6:6.02:0,6,71 ./. 0/0:1,0:1:3.01:0,3,31 0/1:6,5:11:42.75:43,0,179 0/1:3,3:6:14.65:15,0,99 ./. ./. 0/0:2,2:4:6.02:0,6,79 0/0:4,3:7:12.02:0,12,137 0/0:3,3:6:9.03:0,9,111 ./. ./. 0/0:1,1:2:3.01:0,3,42 ./. 0/0:1,4:5:3.01:0,3,42 0/0:2,0:2:6.01:0,6,64 0/0:1,0:1:3.01:0,3,38 0/0:4,0:4:9.03:0,9,118 0/0:4,0:4:9.01:0,9,96 0/0:1,0:1:3.01:0,3,31 0/0:8,1:9:18.06:0,18,232 0/1:4,3:7:18.64:19,0,70 0/0:1,1:2:3.01:0,3,34 ./. 0/0:2,0:2:3.01:0,3,35 0/0:8,1:9:18.05:0,18,207 0/0:3,1:4:6.02:0,6,76 0/0:3,2:5:6.02:0,6,78 ./. 0/0:1,0:1:3:0,3,25 0/0:2,1:3:6.01:0,6,68 11 3129027 . G A 24068.98 . AC=42;AF=0.500;AN=84;BaseQRankSum=5.524;DP=1695;Dels=0.00;FS=3.430;HRun=0;HaplotypeScore=1.6027;InbreedingCoeff=-0.2381;MQ=58.16;MQ0=0;MQRankSum=-2.689;QD=17.33;ReadPosRankSum=-6.194 GT:AD:DP:GQ:PL 0/1:14,20:34:99:586,0,371 0/0:24,0:24:69.19:0,69,799 0/1:7,17:24:99:490,0,177 0/0:91,0:91:99:0,229,2907 0/1:37,34:71:99:981,0,1075 0/1:44,23:67:99:630,0,1223 0/1:23,23:46:99:702,0,552 1/1:0,46:47:99:1547,120,0 0/1:21,19:40:99:584,0,517 0/1:9,8:17:99:244,0,221 0/0:22,0:22:57.14:0,57,674 0/1:14,10:24:99:299,0,372 0/1:13,11:24:99:331,0,372 1/1:0,24:24:69.18:820,69,0 0/1:40,33:73:99:845,0,991 0/0:21,0:21:63.18:0,63,732 1/1:0,40:40:99:1309,108,0 0/0:21,0:21:60.17:0,60,706 0/0:58,0:59:99:0,141,1719 0/1:33,31:64:99:811,0,878 0/1:24,36:60:99:973,0,531 0/1:17,16:33:99:448,0,417 0/1:45,44:89:99:1227,0,1292 0/1:29,19:48:99:435,0,804 0/1:33,22:55:99:589,0,860 1/1:0,40:40:93.29:1194,93,0 1/1:0,37:37:93.28:1150,93,0 0/1:11,20:31:99:605,0,268 0/1:7,12:19:99:285,0,176 0/1:18,17:35:99:520,0,465 0/1:16,13:29:99:371,0,458 0/1:35,31:66:99:799,0,932 1/1:0,42:42:99:1323,105,0 0/0:24,0:24:60.17:0,60,728 0/1:9,11:20:99:321,0,263 0/0:44,0:44:99:0,117,1396 1/1:1,50:51:99:1660,135,0 0/1:15,7:22:99:193,0,419 0/1:13,19:32:99:516,0,308 0/1:24,11:35:99:285,0,695 1/1:1,24:25:30.61:758,31,0 0/1:14,11:25:99:240,0,377 11 3690532 . A C 294.56 . AC=11;AF=0.131;AN=84;BaseQRankSum=-20.122;DP=2380;Dels=0.00;FS=1693.573;HRun=2;HaplotypeScore=1.3846;InbreedingCoeff=-0.1726;MQ=58.87;MQ0=0;MQRankSum=-0.478;QD=0.54;ReadPosRankSum=-21.487 GT:AD:DP:GQ:PL 0/0:37,10:47:52.89:0,53,1212 0/0:44,14:58:59.50:0,59,1535 0/1:32,12:44:75.42:75,0,942 0/0:99,31:130:99:0,249,3467 0/1:63,22:85:26.91:27,0,2063 0/0:57,8:65:99:0,141,2076 0/0:52,13:65:99:0,101,1812 0/0:41,9:50:91.77:0,92,1454 0/1:35,14:49:54.57:55,0,1092 0/1:36,14:50:68.98:69,0,1121 0/0:32,4:36:68.70:0,69,1115 0/0:30,9:39:26.85:0,27,976 0/1:23,11:34:51.32:51,0,667 0/0:30,8:38:3.92:0,4,967 0/0:131,36:167:99:0,115,4177 0/1:33,10:43:30.51:31,0,1047 0/0:49,10:59:88.34:0,88,1635 0/0:38,11:49:24.36:0,24,1265 0/0:45,8:54:70.76:0,71,1496 0/0:54,14:68:99:0,101,1859 0/1:36,10:46:42.96:43,0,1118 0/0:37,14:51:78.23:0,78,1184 0/0:85,23:108:99:0,125,2893 0/0:46,10:56:99:0,104,1627 0/0:42,9:51:26.47:0,26,1454 0/0:54,9:63:99:0,126,1920 0/0:36,4:40:74.36:0,74,1283 0/1:45,12:57:17.39:17,0,1445 0/0:38,11:49:34.63:0,35,1170 0/0:37,11:48:4.38:0,4,1163 0/1:25,8:33:28.75:29,0,793 0/0:27,12:39:1.66:3,0,838 0/0:47,13:60:99:0,139,1656 0/0:43,11:54:31.88:0,32,1448 0/0:35,10:45:3.79:0,4,1132 0/0:52,18:70:33.41:0,33,1683 0/1:54,14:68:24.45:24,0,1612 0/1:29,11:40:6.96:7,0,807 0/0:33,8:41:17.62:0,18,1093 0/0:29,9:38:56.84:0,57,1011 0/0:32,5:37:66.30:0,66,1037 0/0:46,10:56:49:0,49,1514 11 3690534 . T C 3575.88 . AC=36;AF=0.429;AN=84;BaseQRankSum=-29.066;DP=2699;Dels=0.00;FS=3200.000;HRun=2;HaplotypeScore=1.5348;InbreedingCoeff=-0.7473;MQ=58.89;MQ0=0;MQRankSum=1.750;QD=1.49;ReadPosRankSum=-29.129 GT:AD:DP:GQ:PL 0/1:39,14:53:37.72:38,0,1141 0/1:46,21:67:57.56:58,0,1363 0/1:31,16:47:99:147,0,892 0/1:97,55:152:99:128,0,2869 0/1:61,33:94:99:260,0,1901 0/1:52,18:70:39.55:40,0,1767 0/1:52,26:78:99:100,0,1702 0/1:39,15:54:47.97:48,0,1317 0/1:31,22:53:99:279,0,941 0/1:36,17:53:99:133,0,1047 0/0:30,8:38:7.98:0,8,980 0/0:30,11:41:0.59:0,1,865 0/1:22,16:38:99:128,0,637 0/1:29,17:46:99:130,0,873 0/1:129,68:197:99:115,0,3860 0/1:32,17:49:99:185,0,946 0/1:47,18:65:16.29:16,0,1367 0/1:38,14:52:99:163,0,1251 0/1:44,21:65:21.15:21,0,1403 0/1:59,19:78:1.95:2,0,1749 0/1:37,21:59:51.24:51,0,1133 0/0:36,19:55:23.57:0,24,1092 0/1:84,38:122:99:164,0,2751 0/1:45,16:61:53.40:53,0,1420 0/1:44,19:63:60.94:61,0,1485 0/0:55,14:69:67.42:0,67,1790 0/0:36,11:47:42.11:0,42,1100 0/1:42,16:58:97.88:98,0,1332 0/1:40,15:55:60.61:61,0,1254 0/1:37,22:59:44.56:45,0,1196 0/1:26,15:41:74.40:74,0,808 0/1:28,22:50:4.54:5,0,844 0/1:46,26:72:34.84:35,0,1350 0/1:38,20:59:99:220,0,1202 0/1:33,17:50:99:195,0,1093 0/1:52,25:77:99:206,0,1677 0/1:54,20:74:99:115,0,1616 0/1:27,20:47:77.72:78,0,737 0/0:35,14:49:22.03:0,22,1085 0/1:28,14:42:30.53:31,0,881 0/1:30,11:41:22.50:23,0,880 0/1:45,14:59:70.43:70,0,1395 11 3690558 . G T 1359.77 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.919;DP=3456;DS;Dels=0.00;FS=0.495;HRun=1;HaplotypeScore=1.6124;InbreedingCoeff=-0.0244;MQ=58.57;MQ0=0;MQRankSum=1.045;QD=9.31;ReadPosRankSum=-1.281 GT:AD:DP:GQ:PL 0/0:71,1:72:99:0,153,2229 0/0:75,0:76:99:0,208,2555 0/0:61,0:61:99:0,165,2067 0/0:162,0:162:99:0,412,5484 0/0:125,0:125:99:0,331,4427 0/1:44,35:79:99:940,0,1274 0/0:91,0:91:99:0,244,3308 0/1:47,20:67:99:482,0,1436 0/0:70,0:70:99:0,202,2481 0/0:66,0:66:99:0,168,2105 0/0:47,0:48:99:0,123,1526 0/0:54,0:54:99:0,135,1654 0/0:49,0:49:99:0,126,1603 0/0:61,0:61:99:0,175,2136 0/0:244,0:244:99:0,590,7463 0/0:58,0:58:99:0,165,1981 0/0:64,0:64:99:0,168,2081 0/0:72,0:72:99:0,196,2448 0/0:105,0:105:99:0,262,3191 0/0:115,0:115:99:0,298,3718 0/0:104,0:105:99:0,262,3217 0/0:60,0:60:99:0,159,1971 0/0:158,0:158:99:0,385,5242 0/0:73,0:73:99:0,178,2336 0/0:89,0:89:99:0,211,2831 0/0:83,1:84:99:0,166,2594 0/0:59,0:59:99:0,138,1756 0/0:68,0:68:99:0,190,2332 0/0:71,0:71:99:0,184,2315 0/0:66,0:66:99:0,181,2226 0/0:56,0:56:99:0,153,1929 0/0:66,0:66:99:0,169,2119 0/0:80,0:80:99:0,211,2632 0/0:75,0:75:99:0,208,2573 0/0:67,0:67:99:0,193,2378 0/0:83,0:83:99:0,226,2790 0/0:106,0:106:99:0,259,3165 0/0:84,0:84:99:0,226,2772 0/0:59,1:60:99:0,159,1959 0/0:69,0:69:99:0,190,2348 0/0:58,0:58:99:0,163,2026 0/0:80,0:80:99:0,217,2661 11 3700876 . C T 1003.21 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.854;DP=1905;Dels=0.00;FS=5.317;HRun=1;HaplotypeScore=0.7701;InbreedingCoeff=-0.0244;MQ=59.04;MQ0=0;MQRankSum=-0.123;QD=14.33;ReadPosRankSum=-0.899 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,105,1323 0/0:38,0:38:99:0,102,1335 0/0:39,0:39:99:0,111,1424 0/0:78,0:78:99:0,223,3006 0/0:74,0:74:99:0,208,2775 0/0:62,0:63:99:0,166,2256 0/0:58,0:58:99:0,175,2368 0/0:60,0:60:99:0,172,2332 0/0:32,0:32:81.26:0,81,1080 0/0:28,0:28:81.26:0,81,1039 0/0:29,0:29:78.25:0,78,1002 0/0:40,0:40:99:0,111,1409 0/0:29,0:29:84.25:0,84,1058 0/0:22,0:22:66.20:0,66,826 0/0:105,0:105:99:0,289,3726 0/0:36,0:36:99:0,108,1377 0/0:36,0:36:99:0,108,1377 0/0:33,0:33:93.30:0,93,1178 0/0:56,0:56:99:0,156,1983 0/0:60,0:60:99:0,169,2121 0/0:58,0:58:99:0,172,2192 0/0:33,0:33:87.28:0,87,1138 0/0:77,0:77:99:0,214,2893 0/0:67,0:67:99:0,187,2527 0/0:69,0:69:99:0,193,2604 0/0:43,0:43:99:0,126,1719 0/0:35,0:35:99:0,102,1305 0/0:38,0:38:99:0,105,1335 0/0:33,0:33:93.29:0,93,1176 0/1:14,20:34:99:608,0,423 0/1:19,16:36:99:458,0,632 0/0:54,0:54:99:0,147,1906 0/0:51,0:51:99:0,141,1807 0/0:32,0:32:87.28:0,87,1114 0/0:29,0:29:81.25:0,81,1006 0/0:35,0:35:96.30:0,96,1228 0/0:51,0:52:99:0,141,1797 0/0:33,0:33:93.29:0,93,1177 0/0:40,0:40:99:0,114,1455 0/0:29,0:30:84.26:0,84,1052 0/0:38,0:38:99:0,108,1368 0/0:37,0:37:99:0,108,1385 11 4592706 . T TAC 4690.39 . AC=56;AF=0.667;AN=84;BaseQRankSum=1.598;DP=240;FS=0.713;HRun=0;HaplotypeScore=21.8023;InbreedingCoeff=0.0551;MQ=58.40;MQ0=0;MQRankSum=1.930;QD=22.23;ReadPosRankSum=-0.346 GT:AD:DP:GQ:PL 1/1:2,2:5:9.03:140,9,0 0/1:4,4:8:99:196,0,148 1/1:0,6:6:18.06:330,18,0 1/1:6,0:6:17.67:112,18,0 0/1:8,0:8:7.75:8,0,194 1/1:2,2:4:11.70:139,12,0 1/1:0,1:1:3.01:55,3,0 0/1:3,0:3:44.88:45,0,77 0/1:4,0:4:42.97:43,0,117 0/0:2,0:2:3.01:0,3,43 0/0:5,0:5:15.05:0,15,215 1/1:1,5:6:18.06:328,18,0 0/1:2,1:3:46.01:46,0,77 1/1:3,0:3:8.95:97,9,0 0/1:24,0:24:61.28:61,0,573 0/0:9,0:9:24.07:0,24,329 1/1:2,0:2:5.94:41,6,0 0/0:5,0:5:15.05:0,15,215 0/1:9,0:9:78.60:79,0,107 1/1:5,0:5:11.87:81,12,0 1/1:0,10:10:30.10:526,30,0 0/1:3,2:5:73.97:98,0,74 0/1:3,0:3:13.28:13,0,37 1/1:4,2:6:17.51:171,18,0 1/1:6,0:6:17.27:94,17,0 0/1:1,2:3:33.98:100,0,34 1/1:1,2:3:9:131,9,0 1/1:0,3:3:9.03:165,9,0 0/1:7,0:7:37.70:38,0,151 1/1:3,0:3:8.92:64,9,0 0/1:6,0:6:42.64:43,0,111 1/1:0,1:1:3.01:55,3,0 0/1:3,3:6:99:147,0,100 1/1:2,3:6:15.47:213,15,0 0/1:5,4:9:99:196,0,148 1/1:5,0:5:14.27:93,14,0 1/1:4,6:10:29.95:363,30,0 0/1:1,3:4:23.17:153,0,23 1/1:11,0:11:27.97:205,28,0 0/0:5,0:5:15.04:0,15,188 0/0:3,0:3:9.02:0,9,112 0/1:7,0:7:22.41:22,0,178 11 4592708 . C CAG 5236.16 . AC=53;AF=0.631;AN=84;BaseQRankSum=-1.150;DP=251;FS=0.695;HRun=0;HaplotypeScore=21.2252;InbreedingCoeff=-0.0097;MQ=58.37;MQ0=0;MQRankSum=1.591;QD=23.59;ReadPosRankSum=0.654 GT:AD:DP:GQ:PL 1/1:6,0:6:3.39:41,3,0 0/1:8,0:8:63.22:63,0,153 1/1:6,0:6:17.88:129,18,0 1/1:1,6:7:18.06:337,18,0 0/1:7,2:9:88.41:88,0,230 1/1:2,2:4:11.83:145,12,0 0/1:2,0:2:1.76:17,3,0 0/1:3,0:3:16.89:17,0,79 0/1:4,0:4:26.06:26,0,121 0/0:2,0:2:6.02:0,6,74 0/0:5,0:5:15.05:0,15,221 1/1:6,0:6:17.88:131,18,0 0/1:3,0:3:12.05:12,0,79 1/1:0,2:3:9:134,9,0 0/1:16,7:23:99:277,0,550 0/0:9,0:9:24.08:0,24,353 0/1:1,2:3:15.92:103,0,16 0/0:5,0:5:15.05:0,15,221 0/1:4,5:9:99:254,0,141 1/1:1,4:5:12.04:225,12,0 0/1:12,0:12:24.36:162,0,24 0/1:4,0:4:29.12:29,0,76 0/1:2,1:3:38.18:50,0,38 0/1:3,4:7:3.94:249,0,4 1/1:1,6:7:18.06:337,18,0 0/1:3,0:3:29.65:30,0,35 1/1:2,1:3:8.99:102,9,0 1/1:3,0:3:8.93:63,9,0 0/1:4,3:7:99:148,0,156 1/1:0,3:4:12.04:198,12,0 0/1:3,3:6:99:150,0,115 1/1:1,0:1:2.98:21,3,0 0/1:6,0:6:47.16:47,0,115 1/1:4,1:6:12.47:160,12,0 0/1:9,0:9:62.19:62,0,180 1/1:0,5:6:18.06:299,18,0 1/1:6,4:10:26.98:372,27,0 1/1:4,0:4:8.97:73,9,0 1/1:0,11:11:33.11:593,33,0 0/0:5,0:5:12.04:0,12,177 0/0:3,0:3:9.03:0,9,132 0/1:7,2:9:91.34:91,0,200 11 4592812 . T TAAT 231.45 . AC=16;AF=0.190;AN=84;BaseQRankSum=2.071;DP=860;FS=42.909;HRun=0;HaplotypeScore=97.4508;InbreedingCoeff=-0.2738;MQ=56.31;MQ0=0;MQRankSum=1.442;QD=0.79;ReadPosRankSum=-5.566 GT:AD:DP:GQ:PL 0/1:18,0:18:18.04:18,0,242 0/0:15,0:15:17.62:0,18,147 0/1:24,0:24:9.23:9,0,447 0/1:18,1:21:45:45,0,205 0/0:17,0:17:2.98:0,0,333 0/0:23,0:23:35.91:0,36,496 0/0:23,0:23:47.87:0,48,649 0/0:23,0:23:18.38:0,18,331 0/0:14,0:14:4.99:0,5,307 0/1:20,0:20:5.36:5,0,280 0/0:15,0:15:15.03:0,15,208 0/1:25,0:25:22.79:23,0,609 0/1:11,0:11:56.82:57,0,106 0/0:14,0:14:6.96:0,7,183 0/0:52,1:56:30.89:0,31,1013 0/0:28,0:28:24.79:0,25,428 0/0:19,0:19:15.03:0,15,534 0/0:16,0:16:30.07:0,30,458 0/1:10,0:14:50.72:51,0,90 0/0:17,0:17:12.10:0,12,375 0/1:8,0:13:5.89:6,0,286 0/1:19,0:19:10.86:11,0,185 0/0:27,0:29:1.43:4,0,292 0/0:29,0:29:9.15:0,9,534 0/0:23,0:23:37.65:0,38,552 0/1:12,0:12:13.15:13,0,92 0/1:21,0:21:16.95:17,0,228 0/0:22,0:22:2.82:0,3,206 0/1:19,0:19:10.68:11,0,186 0/0:17,0:17:26.88:0,27,382 0/1:19,0:19:21.80:22,0,325 0/0:14,0:14:24.05:0,24,338 0/0:18,0:18:6.95:0,7,277 0/1:18,0:18:14.19:14,0,206 0/0:27,0:27:17.08:0,17,398 0/0:22,0:22:4.02:0,4,379 0/1:12,1:17:42.77:43,0,200 0/0:18,0:18:9.93:0,10,361 0/0:14,0:14:12.04:0,12,205 0/1:23,0:23:40.76:41,0,457 0/0:18,0:18:23.99:0,24,325 0/0:34,0:34:22.57:0,23,578 11 4592814 . T A 89.40 . AC=11;AF=0.131;AN=84;BaseQRankSum=-7.396;DP=785;Dels=0.00;FS=28.446;HRun=1;HaplotypeScore=0.2948;InbreedingCoeff=-0.2120;MQ=56.29;MQ0=0;MQRankSum=3.525;QD=0.43;ReadPosRankSum=-5.530 GT:AD:DP:GQ:PL 0/1:9,5:14:27.33:27,0,187 0/0:10,3:13:15.01:0,15,153 0/1:19,5:24:18.21:18,0,326 0/1:14,3:17:24.25:24,0,217 0/1:13,4:17:7.30:7,0,234 0/0:18,3:21:33.08:0,33,376 0/0:24,1:25:48.10:0,48,516 0/0:17,5:22:39.08:0,39,436 0/0:10,3:13:1.89:3,0,207 0/0:12,9:21:2.29:2,0,227 0/0:13,2:15:18.05:0,18,205 0/1:20,5:25:30.51:31,0,456 0/1:6,3:9:42.26:42,0,83 0/0:7,4:11:12.02:0,12,123 0/0:37,11:48:51.55:0,52,827 0/0:17,8:25:39.06:0,39,406 0/0:16,3:19:7.44:0,7,334 0/0:15,3:18:33.09:0,33,374 0/0:6,3:9:15.03:0,15,173 0/0:14,3:17:30.08:0,30,348 0/0:8,0:8:21.03:0,21,228 0/1:11,5:16:3.39:3,0,253 0/1:17,10:27:6.32:6,0,334 0/0:20,6:26:8.42:0,8,331 0/0:21,1:22:33.03:0,33,333 0/0:9,3:12:12.02:0,12,123 0/1:13,7:20:13.30:13,0,170 0/0:10,6:17:21.04:0,21,227 0/1:12,5:17:8.57:9,0,185 0/0:14,3:17:27.07:0,27,302 0/0:12,6:18:1.65:3,0,278 0/0:13,1:14:30.07:0,30,340 0/0:9,8:17:2.37:0,2,235 0/0:13,2:15:2.76:1,0,259 0/0:20,5:25:11.48:0,11,380 0/0:12,9:21:2.76:1,0,265 0/0:9,3:12:12:0,12,122 0/0:14,2:16:2.72:1,0,244 0/0:9,4:13:15.02:0,15,164 0/1:17,4:21:24.94:25,0,313 0/0:14,2:16:33.06:0,33,342 0/0:27,5:32:19.39:0,19,413 11 4594545 . A G 17855.36 . AC=13;AF=0.155;AN=84;BaseQRankSum=20.780;DP=4382;DS;Dels=0.00;FS=15.394;HRun=0;HaplotypeScore=1.6319;InbreedingCoeff=-0.0011;MQ=59.47;MQ0=0;MQRankSum=0.366;QD=15.25;ReadPosRankSum=0.554 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,181,2253 0/0:82,0:82:99:0,214,2660 0/1:41,40:81:99:1124,0,1200 0/0:177,0:177:99:0,457,5865 0/0:186,0:186:99:0,476,6216 0/1:56,74:130:99:2306,0,1685 0/1:74,72:146:99:2183,0,2073 0/1:72,70:142:99:2103,0,2112 0/0:106,0:106:99:0,292,3600 0/0:66,0:66:99:0,187,2277 0/0:65,0:65:99:0,187,2297 1/1:0,68:68:99:2453,190,0 0/1:46,28:74:99:777,0,1278 0/1:43,35:78:99:976,0,1290 0/0:250,0:250:99:0,653,8118 0/0:62,0:62:99:0,184,2245 0/0:89,0:89:99:0,247,3036 0/0:91,0:91:99:0,253,3158 0/0:131,0:131:99:0,343,4328 0/0:157,0:157:99:0,406,5115 0/1:55,59:114:99:1770,0,1569 0/1:40,32:72:99:908,0,1093 0/0:196,0:197:99:0,515,6651 0/0:146,0:146:99:0,376,4833 0/0:145,0:145:99:0,373,4899 0/0:137,0:137:99:0,352,4570 0/0:88,0:88:99:0,244,3038 0/0:66,0:66:99:0,187,2293 0/0:56,0:56:99:0,150,1861 0/0:78,0:78:99:0,217,2693 0/0:79,0:79:99:0,226,2787 0/0:143,0:143:99:0,364,4618 0/1:50,26:76:99:789,0,1467 0/0:75,0:75:99:0,205,2548 0/0:82,0:82:99:0,226,2810 0/0:78,0:78:99:0,214,2660 0/1:68,46:114:99:1290,0,2043 0/1:35,41:76:99:1176,0,935 0/0:92,0:92:99:0,259,3178 0/0:85,0:85:99:0,238,2937 0/0:66,0:66:99:0,190,2313 0/0:69,0:69:99:0,196,2402 11 4594558 . T TG 3938.69 . AC=3;AF=0.036;AN=84;BaseQRankSum=-14.901;DP=4205;DS;FS=2.055;HRun=1;HaplotypeScore=277.0253;InbreedingCoeff=-0.0370;MQ=59.43;MQ0=0;MQRankSum=2.567;QD=18.07;ReadPosRankSum=-0.982 GT:AD:DP:GQ:PL 0/1:42,26:68:99:933,0,1245 0/1:38,43:81:99:1659,0,1159 0/0:76,0:76:99:0,220,2779 0/0:175,0:175:99:0,527,6704 0/0:175,0:175:99:0,518,6597 0/0:135,0:134:99:0,397,5043 0/0:135,0:134:99:0,379,4909 0/0:120,0:118:99:0,343,4442 0/0:109,0:109:99:0,322,4079 0/1:32,37:69:99:1347,0,996 0/0:68,0:68:99:0,199,2516 0/0:74,0:74:99:0,191,2654 0/0:67,0:67:99:0,199,2527 0/0:73,0:73:99:0,217,2797 0/0:231,0:231:99:0,665,8469 0/0:62,0:62:99:0,178,2271 0/0:87,0:87:99:0,259,3288 0/0:85,0:85:99:0,250,3199 0/0:128,0:128:99:0,367,4691 0/0:149,0:149:99:0,433,5488 0/0:110,0:110:99:0,315,4023 0/0:74,0:74:99:0,220,2768 0/0:185,0:185:99:0,545,6909 0/0:127,0:126:99:0,382,4847 0/0:130,0:127:99:0,388,4985 0/0:129,0:127:99:0,367,4698 0/0:86,0:85:99:0,253,3196 0/0:69,0:69:99:0,208,2610 0/0:58,1:59:99:0,124,2054 0/0:72,0:72:99:0,214,2735 0/0:78,0:78:99:0,229,2886 0/0:140,0:140:99:0,403,5124 0/0:72,0:72:99:0,210,2661 0/0:77,0:77:99:0,226,2895 0/0:73,0:73:99:0,208,2645 0/0:79,0:79:99:0,232,2929 0/0:113,0:113:99:0,279,4044 0/0:69,0:69:99:0,205,2626 0/0:81,0:81:99:0,241,3049 0/0:79,0:78:99:0,226,2894 0/0:63,0:63:99:0,175,2227 0/0:73,0:73:99:0,214,2720 11 4598956 . C T 708.64 . 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C A 1745.22 . 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G C 376.74 . 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G A 15766.87 . 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G A 20743.72 . 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T C 16338.75 . AC=22;AF=0.262;AN=84;BaseQRankSum=21.784;DP=2153;DS;Dels=0.00;FS=9.668;HRun=0;HaplotypeScore=2.0037;InbreedingCoeff=0.1378;MQ=59.28;MQ0=0;MQRankSum=-0.735;QD=17.72;ReadPosRankSum=-0.589 GT:AD:DP:GQ:PL 0/0:49,0:50:99:0,138,1578 0/1:22,13:35:99:313,0,586 1/1:1,41:42:91.77:1389,92,0 0/1:37,33:70:99:1054,0,1029 0/0:66,0:66:99:0,196,2221 0/1:35,21:56:99:678,0,990 0/1:21,22:43:99:746,0,566 0/0:48,0:48:99:0,135,1562 0/0:33,0:33:84.25:0,84,997 0/0:43,0:43:99:0,117,1367 0/0:29,0:29:81.24:0,81,968 0/0:50,0:50:99:0,138,1566 0/0:39,0:39:99:0,114,1295 0/0:45,0:45:99:0,123,1446 0/0:143,0:143:99:0,388,4458 0/0:32,0:32:93.27:0,93,1087 0/0:51,0:51:99:0,147,1699 0/0:47,0:47:99:0,132,1529 0/1:34,27:62:99:756,0,923 0/1:44,36:80:99:1012,0,1170 0/1:39,38:78:99:1086,0,1060 1/1:0,54:54:99:1940,159,0 0/1:43,33:76:99:1094,0,1157 0/0:49,0:49:99:0,132,1548 0/0:67,0:67:99:0,190,2212 0/1:22,26:48:99:900,0,600 0/1:14,14:28:99:338,0,350 0/0:38,0:38:99:0,105,1217 1/1:0,39:39:99:1324,108,0 0/1:21,26:47:99:790,0,560 0/0:40,0:40:99:0,108,1265 0/0:77,0:77:99:0,208,2451 0/1:33,28:61:99:759,0,946 1/1:0,28:28:78.24:958,78,0 0/1:15,20:35:99:609,0,358 0/1:21,19:40:99:594,0,543 0/0:69,0:70:99:0,193,2253 0/0:43,0:43:99:0,120,1378 0/0:51,0:51:99:0,141,1649 0/0:42,0:42:99:0,123,1426 0/0:26,0:26:69.20:0,69,811 0/0:52,0:52:99:0,147,1667 11 5719750 . G C 20026.58 . AC=43;AF=0.512;AN=84;BaseQRankSum=-25.392;DP=1289;Dels=0.00;FS=19.109;HRun=0;HaplotypeScore=1.1363;InbreedingCoeff=-0.0959;MQ=59.04;MQ0=0;MQRankSum=2.501;QD=19.71;ReadPosRankSum=-1.336 GT:AD:DP:GQ:PL 1/1:0,34:34:99:1085,99,0 0/1:7,10:17:99:199,0,182 0/0:23,1:24:40.68:0,41,848 1/1:0,43:43:99:1456,123,0 1/1:0,39:39:99:1368,117,0 0/1:10,19:29:99:551,0,324 0/1:9,12:21:99:347,0,259 0/1:7,6:13:99:178,0,251 0/1:13,13:26:99:333,0,409 0/1:8,9:17:99:238,0,258 1/1:0,24:24:69.18:776,69,0 0/1:11,17:28:99:434,0,334 1/1:0,19:19:54.13:583,54,0 0/0:21,0:21:63.20:0,63,788 1/1:0,84:85:99:2606,241,0 0/1:9,16:25:99:446,0,235 0/1:19,18:37:99:442,0,606 0/0:26,0:27:75.24:0,75,956 0/0:38,0:38:99:0,111,1386 0/1:33,10:43:99:203,0,1050 0/1:20,25:45:99:628,0,634 0/0:29,0:29:84.27:0,84,1071 1/1:0,39:39:99:1397,117,0 0/1:12,15:27:99:436,0,407 0/1:10,11:21:99:317,0,308 0/1:16,9:25:99:241,0,491 1/1:0,19:19:57.15:631,57,0 1/1:0,33:33:96.24:1043,96,0 0/1:9,8:17:99:212,0,284 0/1:15,12:27:99:315,0,396 1/1:0,28:28:81.17:878,81,0 0/1:32,22:54:99:536,0,890 0/0:33,0:33:87.27:0,87,1098 0/0:21,0:21:63.20:0,63,806 0/1:13,11:24:99:275,0,359 0/1:16,18:34:99:487,0,466 0/0:52,0:52:99:0,144,1808 0/1:14,10:24:99:247,0,449 0/0:28,0:28:84.27:0,84,1074 0/1:24,19:43:99:489,0,672 0/1:15,13:29:99:307,0,452 0/1:13,14:27:99:343,0,406 11 6243804 . A G 92056.31 . AC=70;AF=0.833;AN=84;BaseQRankSum=11.366;DP=3230;DS;Dels=0.00;FS=0.765;HRun=1;HaplotypeScore=1.9612;InbreedingCoeff=-0.0286;MQ=59.31;MQ0=0;MQRankSum=-1.454;QD=29.17;ReadPosRankSum=0.656 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2610,211,0 0/1:36,31:67:99:826,0,1050 0/0:74,0:74:99:0,214,2551 1/1:0,88:88:99:3202,244,0 1/1:0,81:81:99:3010,229,0 0/1:44,43:87:99:1351,0,1357 1/1:0,60:60:99:2183,166,0 0/1:34,25:59:99:796,0,1007 1/1:0,67:67:99:2301,187,0 1/1:0,62:62:99:1934,156,0 0/1:21,35:56:99:1052,0,592 1/1:0,65:65:99:2297,190,0 1/1:0,56:56:99:1793,144,0 0/1:45,43:88:99:1247,0,1305 1/1:0,216:217:99:7180,578,0 1/1:0,63:63:99:2091,174,0 1/1:0,79:79:99:2700,223,0 0/1:32,34:66:99:1043,0,910 1/1:0,113:114:99:3970,340,0 1/1:0,107:107:99:3810,310,0 1/1:0,113:113:99:3692,304,0 1/1:0,63:63:99:2215,181,0 0/1:50,50:100:99:1480,0,1407 1/1:0,46:46:99:1752,132,0 1/1:0,55:55:99:2094,159,0 0/1:28,26:54:99:845,0,804 0/1:24,29:53:99:841,0,684 1/1:0,85:85:99:2867,232,0 0/1:42,20:62:99:542,0,1315 1/1:0,73:73:99:2506,208,0 1/1:0,62:62:99:2167,175,0 1/1:0,103:103:99:3487,280,0 1/1:0,69:69:99:2348,193,0 0/1:29,28:57:99:824,0,800 1/1:0,56:56:99:1930,159,0 0/1:41,32:73:99:919,0,1083 1/1:0,121:122:99:3941,325,0 1/1:0,71:71:99:2409,196,0 1/1:0,67:67:99:2299,193,0 1/1:0,74:74:99:2573,205,0 1/1:1,57:58:99:2011,134,0 1/1:0,82:82:99:2919,235,0 11 6458839 . C T 2097.99 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.140;DP=1972;Dels=0.00;FS=32.704;HRun=2;HaplotypeScore=1.3315;InbreedingCoeff=-0.0244;MQ=59.34;MQ0=0;MQRankSum=0.171;QD=14.77;ReadPosRankSum=1.626 GT:AD:DP:GQ:PL 0/0:38,0:38:96.30:0,96,1219 0/0:28,0:28:81.25:0,81,1015 0/0:32,0:33:96.30:0,96,1197 0/0:95,0:95:99:0,256,3312 0/0:92,0:92:99:0,259,3379 0/1:28,33:61:99:985,0,839 0/0:51,1:52:99:0,129,1755 0/1:42,38:81:99:1175,0,1358 0/0:37,0:37:96.30:0,96,1208 0/0:31,0:31:78.25:0,78,991 0/0:28,0:28:78.24:0,78,986 0/0:32,0:32:84.27:0,84,1076 0/0:35,0:35:96.30:0,96,1217 0/0:38,0:38:99:0,102,1267 0/0:139,0:140:99:0,367,4536 0/0:32,0:32:90.27:0,90,1109 0/0:36,0:37:99:0,102,1248 0/0:34,0:34:93.28:0,93,1168 0/0:57,0:57:99:0,153,1915 0/0:59,0:59:99:0,147,1855 0/0:54,1:55:99:0,132,1878 0/0:38,0:38:99:0,105,1288 0/0:91,0:91:99:0,253,3325 0/0:42,0:42:99:0,111,1479 0/0:56,0:56:99:0,150,2015 0/0:56,0:56:99:0,150,1981 0/0:31,0:31:90.27:0,90,1129 0/0:30,0:30:84.26:0,84,1044 0/0:28,0:28:75.24:0,75,951 0/0:44,0:44:99:0,120,1491 0/0:32,0:32:96.30:0,96,1214 0/0:54,0:54:99:0,156,1968 0/0:39,0:39:99:0,105,1313 0/0:44,0:44:99:0,123,1542 0/0:44,0:44:99:0,123,1532 0/0:29,0:30:84.27:0,84,1064 0/0:74,1:77:99:0,196,2463 0/0:27,0:27:78.24:0,78,968 0/0:27,0:27:72.18:0,72,848 0/0:36,0:36:99:0,105,1312 0/0:21,0:21:54.17:0,54,682 0/0:30,0:30:87.27:0,87,1096 11 6479328 . G C 1002.90 . AC=18;AF=0.214;AN=84;BaseQRankSum=-1.215;DP=1671;Dels=0.00;FS=1545.926;HRun=2;HaplotypeScore=2.0013;InbreedingCoeff=-0.2765;MQ=58.89;MQ0=0;MQRankSum=0.485;QD=1.14;ReadPosRankSum=-16.479 GT:AD:DP:GQ:PL 0/1:21,6:27:18.19:18,0,497 0/0:20,1:21:57.17:0,57,687 0/0:15,3:18:11.67:0,12,457 0/1:92,28:120:34.30:34,0,2407 0/1:79,22:101:99:133,0,2208 0/0:55,16:72:74.28:0,74,1518 0/0:55,12:67:26.26:0,26,1577 0/1:55,13:68:61.86:62,0,1542 0/1:17,5:22:28.30:28,0,380 0/1:17,7:24:69.87:70,0,398 0/1:18,4:22:13.65:14,0,605 0/0:20,3:23:20.99:0,21,494 0/1:10,1:11:8.50:8,0,285 0/1:20,6:26:76.24:76,0,576 0/1:53,15:68:99:100,0,1260 0/1:27,5:32:33.68:34,0,697 0/1:17,4:21:18.02:18,0,498 0/0:15,1:16:36.10:0,36,412 0/0:36,5:41:51.54:0,52,929 0/0:42,8:51:22.16:0,22,1273 0/0:27,4:31:36.09:0,36,806 0/1:24,6:30:66.63:67,0,698 0/1:115,31:147:99:252,0,2980 0/1:45,15:60:99:152,0,1062 0/0:50,6:56:76.90:0,77,1517 0/0:46,16:62:37.01:0,37,1417 0/0:21,1:22:26.21:0,26,699 0/0:24,2:26:3.09:0,3,660 0/1:19,3:22:11.33:11,0,506 0/0:19,2:21:51.13:0,51,613 0/1:20,5:25:13.63:14,0,484 0/1:39,16:55:76.15:76,0,1029 0/0:30,4:34:42.08:0,42,810 0/0:26,5:31:36.56:0,37,721 0/0:19,1:20:54.14:0,54,621 0/0:22,3:25:28.47:0,28,599 0/0:30,6:36:24.08:0,24,837 0/0:15,5:20:42.11:0,42,478 0/0:18,4:22:10.34:0,10,481 0/0:19,0:19:54.17:0,54,662 0/0:27,2:29:72.13:0,72,803 0/0:24,3:27:63.17:0,63,744 11 6502754 . GGCA G 39.01 . AC=5;AF=0.060;AN=84;BaseQRankSum=1.566;DP=789;FS=0.000;HRun=0;HaplotypeScore=76.8628;InbreedingCoeff=-0.0833;MQ=58.52;MQ0=0;MQRankSum=0.155;QD=0.47;ReadPosRankSum=-0.069 GT:AD:DP:GQ:PL 0/0:18,0:18:15.05:0,15,268 0/1:16,1:17:15.40:15,0,442 0/0:13,0:13:18.06:0,18,343 0/0:25,0:25:0.39:0,0,733 0/0:23,0:23:33.11:0,33,595 0/0:24,0:24:39.13:0,39,781 0/0:16,0:14:18.06:0,18,370 0/0:30,0:30:42.06:0,42,733 0/0:20,0:20:30.09:0,30,530 0/0:8,0:8:12.02:0,12,150 0/0:11,0:11:12.04:0,12,252 0/0:13,0:13:18.06:0,18,317 0/0:14,0:14:21.07:0,21,431 0/0:12,0:12:9.03:0,9,185 0/0:54,0:54:61.41:0,61,1095 0/1:21,2:23:50.57:51,0,607 0/0:20,0:20:39.12:0,39,732 0/0:11,0:11:6.02:0,6,95 0/0:19,0:19:15.03:0,15,247 0/0:28,0:28:36.12:0,36,683 0/0:19,0:19:18.06:0,18,365 0/0:24,0:24:39.13:0,39,757 0/0:40,0:40:30.45:0,30,999 0/1:9,1:9:35.84:36,0,87 0/0:21,0:21:24.08:0,24,489 0/0:17,0:16:21.07:0,21,366 0/0:14,0:14:30.09:0,30,590 0/1:14,0:14:15.86:16,0,182 0/0:16,0:16:21.06:0,21,362 0/0:10,0:10:9.03:0,9,189 0/0:12,0:12:21.07:0,21,440 0/0:29,0:29:51.17:0,51,997 0/0:15,0:15:9.03:0,9,171 0/0:14,0:14:12.03:0,12,205 0/0:21,0:21:30.08:0,30,499 0/1:18,1:19:23.79:24,0,322 0/0:19,0:19:21.07:0,21,437 0/0:15,0:15:15.04:0,15,276 0/0:18,0:18:21.07:0,21,427 0/0:17,0:17:24.08:0,24,466 0/0:13,0:13:9.03:0,9,188 0/0:13,0:13:24.08:0,24,495 11 6502780 . C A 3094.88 . AC=14;AF=0.167;AN=84;BaseQRankSum=13.496;DP=776;Dels=0.00;FS=12.646;HRun=0;HaplotypeScore=0.3888;InbreedingCoeff=0.3140;MQ=58.36;MQ0=0;MQRankSum=1.159;QD=19.71;ReadPosRankSum=1.142 GT:AD:DP:GQ:PL 0/0:16,0:16:42.09:0,42,441 0/0:16,0:16:42.11:0,42,453 0/0:13,0:13:36.08:0,36,389 0/0:22,0:22:66.17:0,66,741 0/0:31,0:31:93.26:0,93,1073 0/0:18,0:18:51.15:0,51,599 0/0:16,0:16:48.12:0,48,558 0/0:20,0:20:60.18:0,60,710 0/0:14,0:14:39.10:0,39,424 0/0:12,0:12:30.07:0,30,314 0/0:12,0:12:33.06:0,33,340 0/1:7,4:11:99:119,0,150 0/0:12,0:12:33.06:0,33,338 1/1:0,11:11:33.11:416,33,0 0/0:50,0:50:99:0,138,1494 0/1:11,13:24:99:413,0,269 0/0:20,0:20:57.13:0,57,602 0/0:17,0:17:51.14:0,51,561 0/0:30,0:30:90.22:0,90,965 0/0:27,0:27:75.15:0,75,792 0/0:27,0:27:78.21:0,78,866 0/0:23,0:23:60.11:0,60,618 0/0:29,0:29:84.22:0,84,977 0/1:10,3:13:75.26:75,0,306 0/0:13,0:13:33.08:0,33,384 0/1:6,6:12:99:198,0,160 0/1:3,7:10:67.05:236,0,67 0/0:14,0:14:42.07:0,42,433 0/1:7,7:14:99:206,0,203 1/1:0,16:16:48.15:603,48,0 1/1:0,13:13:36.11:441,36,0 0/0:24,0:24:72.17:0,72,778 0/1:9,9:18:99:280,0,223 0/0:14,0:14:42.11:0,42,456 0/0:19,0:19:54.09:0,54,558 0/0:16,0:16:45.09:0,45,467 0/0:21,0:21:51.13:0,51,566 0/1:6,9:15:99:280,0,147 0/0:21,0:21:63.15:0,63,672 0/0:18,0:18:54.13:0,54,582 0/0:16,0:16:48.12:0,48,512 0/0:18,0:18:51.13:0,51,549 11 6532519 . C T 18943.38 . AC=16;AF=0.190;AN=84;BaseQRankSum=-23.164;DP=3306;Dels=0.00;FS=11.023;HRun=0;HaplotypeScore=1.4659;InbreedingCoeff=-0.0809;MQ=59.33;MQ0=1;MQRankSum=2.323;QD=15.06;ReadPosRankSum=0.137 GT:AD:DP:GQ:PL 0/1:41,39:80:99:1070,0,1200 0/0:52,0:52:99:0,147,1834 0/1:23,32:55:99:883,0,614 0/1:66,78:144:99:2080,0,1921 0/0:106,1:107:99:0,246,3692 0/1:44,52:96:99:1514,0,1357 0/1:34,37:71:99:1107,0,1050 1/1:0,86:86:99:2951,247,0 0/1:34,18:52:99:471,0,1073 0/0:48,0:48:99:0,135,1658 0/1:25,32:57:99:895,0,710 0/0:50,0:50:99:0,129,1616 0/0:43,0:43:99:0,117,1429 0/0:57,0:57:99:0,153,1857 0/0:190,0:191:99:0,499,6161 0/0:67,2:69:99:0,145,2270 0/0:56,0:56:99:0,162,1979 0/1:32,32:64:99:930,0,981 0/0:98,1:101:99:0,229,3163 0/0:123,1:124:99:0,292,4057 0/0:111,0:111:99:0,283,3554 0/0:66,1:67:99:0,159,2289 0/1:84,54:138:99:1433,0,2698 0/0:75,0:75:99:0,205,2716 0/0:102,0:102:99:0,274,3676 0/0:73,1:74:99:0,184,2471 0/0:47,0:47:99:0,129,1596 0/1:34,25:59:99:681,0,1013 0/1:23,24:47:99:654,0,691 0/0:65,0:65:99:0,184,2267 0/0:51,0:51:99:0,144,1781 0/1:57,68:125:99:1853,0,1583 0/0:109,1:110:99:0,266,3700 0/0:77,0:77:99:0,220,2728 0/0:60,0:60:99:0,172,2094 0/0:62,0:62:99:0,169,2073 0/1:57,56:113:99:1401,0,1589 0/1:34,37:71:99:1020,0,945 0/0:67,0:67:99:0,187,2316 0/0:51,0:51:99:0,150,1841 0/0:61,0:61:99:0,181,2232 0/0:70,0:70:99:0,205,2522 11 6625566 . A G 210.23 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.625;DP=584;Dels=0.00;FS=2.007;HRun=0;HaplotypeScore=0.6574;InbreedingCoeff=-0.0148;MQ=58.38;MQ0=0;MQRankSum=0.032;QD=12.37;ReadPosRankSum=-0.020 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,280 0/0:17,0:17:51.15:0,51,599 0/0:15,0:15:42.13:0,42,497 0/0:23,0:23:69.21:0,69,818 0/0:24,0:24:69.21:0,69,832 0/0:16,0:16:42.12:0,42,515 0/0:13,0:13:33.10:0,33,421 0/0:19,0:19:54.16:0,54,637 0/0:20,0:20:51.15:0,51,595 0/0:10,0:10:27.08:0,27,329 0/0:10,0:10:24.07:0,24,293 0/0:4,0:4:12.04:0,12,141 0/0:9,0:9:21.07:0,21,267 0/0:12,0:12:33.10:0,33,383 0/0:37,0:37:99:0,102,1166 0/0:10,0:10:30.08:0,30,338 0/0:11,0:11:33.09:0,33,377 0/0:20,0:20:60.18:0,60,715 0/0:14,0:14:39.12:0,39,467 0/0:27,0:27:75.23:0,75,910 0/0:12,0:12:36.11:0,36,422 0/0:14,0:14:39.11:0,39,463 0/0:18,0:18:54.16:0,54,637 0/0:15,0:15:45.14:0,45,550 0/0:16,0:16:45.13:0,45,534 0/0:11,0:11:33.10:0,33,397 0/0:4,0:4:9.01:0,9,98 0/0:9,0:9:24.07:0,24,280 0/0:8,0:8:24.07:0,24,289 0/0:11,0:11:30.09:0,30,358 0/0:8,0:8:24.07:0,24,289 0/1:8,9:17:99:256,0,209 0/0:15,0:15:39.11:0,39,457 0/0:17,0:17:48.13:0,48,549 0/0:9,0:9:27.08:0,27,315 0/0:8,0:8:21.06:0,21,252 0/0:16,0:16:48.15:0,48,571 0/0:12,0:12:33.10:0,33,390 0/0:16,0:16:45.13:0,45,528 0/0:9,0:9:27.08:0,27,322 0/0:9,0:9:24.06:0,24,276 0/0:11,0:11:30.09:0,30,355 11 6630833 . G A 45418.40 . 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C T 40672.53 . 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C T 20420.51 . 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G A 854.70 . 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G A 32138.08 . 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C T 7538.81 . 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T A 6678.95 . 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T C 6468.48 . 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G A 824.82 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.639;DP=3994;DS;Dels=0.00;FS=19.646;HRun=0;HaplotypeScore=3.4598;InbreedingCoeff=-0.0120;MQ=59.49;MQ0=0;MQRankSum=-0.543;QD=10.85;ReadPosRankSum=0.524 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,168,2047 0/0:63,0:63:99:0,156,1938 0/0:68,0:69:99:0,178,2169 0/0:182,0:182:99:0,482,6342 0/0:189,0:189:99:0,512,6762 0/0:183,0:183:99:0,500,6645 0/0:135,0:135:99:0,367,4820 0/0:164,0:164:99:0,445,5855 0/0:53,0:53:99:0,132,1658 0/0:64,0:64:99:0,187,2239 0/1:44,32:76:99:871,0,1264 0/0:73,0:73:99:0,190,2312 0/0:58,0:58:99:0,159,1946 0/0:61,0:61:99:0,172,2079 0/0:194,0:194:99:0,515,6279 0/0:53,0:53:99:0,147,1758 0/0:71,0:71:99:0,199,2415 0/0:87,0:87:99:0,247,3017 0/0:80,0:80:99:0,211,2464 0/0:87,0:87:99:0,241,3010 0/0:94,0:95:99:0,265,3188 0/0:62,0:62:99:0,153,1937 0/0:219,1:220:99:0,550,7725 0/0:175,0:175:99:0,463,6128 0/0:172,1:173:99:0,444,6391 0/0:144,0:144:99:0,394,5262 0/0:45,1:46:89.02:0,89,1418 0/0:69,0:69:99:0,190,2311 0/0:66,0:66:99:0,184,2222 0/0:75,0:75:99:0,214,2571 0/0:56,0:56:99:0,166,2014 0/0:97,0:97:99:0,262,3254 0/0:56,0:56:99:0,150,1862 0/0:63,0:63:99:0,184,2239 0/0:72,0:72:99:0,205,2502 0/0:80,0:80:99:0,217,2621 0/0:83,0:83:99:0,232,2824 0/0:79,0:79:99:0,220,2652 0/0:70,0:70:99:0,202,2424 0/0:82,0:82:99:0,223,2699 0/0:60,0:60:99:0,172,2088 0/0:69,0:69:99:0,202,2446 11 7661047 . TCTC T 857.41 . 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A G 87249.94 . AC=84;AF=1.000;AN=84;BaseQRankSum=1.531;DP=2672;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.0316;InbreedingCoeff=-0.0000;MQ=59.31;MQ0=0;MQRankSum=0.846;QD=32.65;ReadPosRankSum=1.711 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1815,147,0 1/1:0,52:52:99:1562,129,0 1/1:0,57:57:99:1739,144,0 1/1:1,112:113:99:3749,262,0 1/1:0,104:104:99:3527,265,0 1/1:0,95:95:99:3193,244,0 1/1:0,85:85:99:2882,217,0 1/1:0,74:74:99:2536,196,0 1/1:0,58:58:99:1976,162,0 1/1:0,57:57:99:1849,156,0 1/1:0,56:56:99:1835,153,0 1/1:1,49:50:99:1557,126,0 1/1:0,55:55:99:1700,138,0 1/1:0,52:52:99:1754,147,0 1/1:0,193:193:99:5895,472,0 1/1:0,44:44:99:1492,123,0 1/1:0,63:63:99:2123,172,0 1/1:0,55:55:99:1779,147,0 1/1:0,55:55:99:1693,138,0 1/1:0,66:66:99:1997,159,0 1/1:0,58:58:99:1860,153,0 1/1:0,36:36:99:1188,99,0 1/1:0,115:115:99:3812,289,0 1/1:0,74:74:99:2705,208,0 1/1:0,82:82:99:2946,223,0 1/1:0,62:62:99:2044,156,0 1/1:0,51:51:99:1692,138,0 1/1:0,63:63:99:1952,162,0 1/1:0,45:45:99:1495,123,0 1/1:0,52:52:99:1699,144,0 1/1:0,45:45:99:1421,117,0 1/1:0,60:60:99:1850,147,0 1/1:0,28:28:75.23:942,75,0 1/1:0,47:47:99:1593,132,0 1/1:0,52:52:99:1723,138,0 1/1:0,67:67:99:2231,181,0 1/1:0,36:37:87.26:1082,87,0 1/1:0,64:64:99:2090,172,0 1/1:0,45:45:99:1457,120,0 1/1:0,46:46:99:1588,132,0 1/1:0,44:44:99:1433,117,0 1/1:0,59:59:99:1796,147,0 11 7673015 . G A 84900.93 . 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T C 2923.52 . AC=5;AF=0.060;AN=84;BaseQRankSum=0.096;DP=3285;DS;Dels=0.00;FS=20.062;HRun=0;HaplotypeScore=2.9642;InbreedingCoeff=-0.0633;MQ=59.12;MQ0=0;MQRankSum=-0.885;QD=9.37;ReadPosRankSum=-0.877 GT:AD:DP:GQ:PL 0/0:78,0:78:99:0,208,2468 0/0:80,0:81:99:0,202,2400 0/0:56,0:56:99:0,138,1645 0/0:104,0:106:99:0,256,2959 0/0:78,0:78:99:0,199,2375 0/1:56,22:78:99:530,0,1524 0/0:58,0:58:99:0,150,1794 0/1:33,18:51:99:446,0,805 0/0:68,0:69:99:0,178,2144 0/0:50,0:50:99:0,132,1609 0/0:68,0:68:99:0,177,2099 0/0:55,0:55:99:0,144,1741 0/0:61,0:61:99:0,156,1834 0/0:71,0:71:99:0,196,2319 0/0:245,0:245:99:0,589,6926 0/0:59,0:59:99:0,150,1826 0/0:71,0:72:99:0,199,2342 0/0:69,0:70:99:0,178,2119 0/0:92,0:92:99:0,247,2885 0/0:118,0:119:99:0,304,3617 0/0:114,0:115:99:0,304,3589 0/0:80,0:80:99:0,199,2372 0/0:123,0:124:99:0,313,3683 0/0:44,0:44:99:0,120,1402 0/0:53,0:54:99:0,135,1620 0/0:67,0:69:99:0,162,1965 0/0:49,0:49:99:0,126,1520 0/0:82,0:84:99:0,217,2599 0/0:56,0:56:99:0,135,1668 0/1:29,23:53:99:594,0,724 0/0:57,0:57:99:0,156,1847 0/0:126,0:127:99:0,322,3887 0/1:39,32:71:99:815,0,1005 0/0:84,0:84:99:0,217,2589 0/0:62,0:62:99:0,159,1936 0/0:91,1:93:99:0,244,2870 0/0:104,0:105:99:0,283,3354 0/0:69,0:69:99:0,174,2075 0/0:53,0:54:99:0,141,1633 0/0:89,0:90:99:0,223,2699 0/0:69,0:69:99:0,187,2197 0/1:35,24:59:99:635,0,975 11 7673049 . C G 2616.70 . AC=5;AF=0.060;AN=84;BaseQRankSum=3.578;DP=3049;DS;Dels=0.00;FS=15.486;HRun=0;HaplotypeScore=3.4358;InbreedingCoeff=-0.0633;MQ=58.92;MQ0=0;MQRankSum=-1.221;QD=9.55;ReadPosRankSum=-0.749 GT:AD:DP:GQ:PL 0/0:75,0:75:99:0,196,2404 0/0:80,0:80:99:0,214,2546 0/0:45,0:45:99:0,117,1427 0/0:92,0:92:99:0,226,2855 0/0:69,0:69:99:0,196,2498 0/1:43,17:61:99:471,0,1259 0/0:54,0:54:99:0,129,1736 0/1:31,11:42:99:275,0,756 0/0:66,0:66:99:0,175,2150 0/0:53,0:53:99:0,147,1781 0/0:56,0:56:99:0,153,1868 0/0:42,0:64:99:0,102,1219 0/0:61,0:61:99:0,171,2059 0/0:29,1:60:81.23:0,81,954 0/0:212,0:214:99:0,518,6423 0/0:66,0:66:99:0,180,2133 0/0:69,0:70:99:0,193,2310 0/0:71,0:71:99:0,184,2207 0/0:83,0:83:99:0,211,2518 0/0:100,0:100:99:0,262,3212 0/0:105,0:105:99:0,259,3049 0/0:67,0:67:99:0,190,2307 0/0:123,0:123:99:0,316,4063 0/0:37,0:37:99:0,99,1248 0/0:52,0:52:99:0,141,1823 0/0:64,0:64:99:0,163,2144 0/0:54,0:54:99:0,147,1805 0/0:74,0:74:99:0,193,2330 0/0:59,0:59:99:0,153,1885 0/1:25,21:46:99:573,0,719 0/0:52,0:52:99:0,132,1610 0/0:110,0:110:99:0,268,3379 0/1:39,35:75:99:958,0,920 0/0:75,0:75:99:0,199,2405 0/0:62,0:62:99:0,159,1997 0/0:87,0:87:99:0,241,2892 0/0:92,0:92:99:0,217,2561 0/0:70,0:70:99:0,181,2171 0/0:57,0:57:99:0,144,1753 0/0:85,0:85:99:0,226,2706 0/0:70,0:71:99:0,187,2231 0/1:33,17:50:99:437,0,966 11 7690873 . C T 2642.30 . AC=5;AF=0.060;AN=84;BaseQRankSum=-7.266;DP=1839;Dels=0.00;FS=3.384;HRun=0;HaplotypeScore=0.6092;InbreedingCoeff=-0.0633;MQ=59.28;MQ0=0;MQRankSum=1.583;QD=11.59;ReadPosRankSum=0.606 GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,99,1181 0/0:33,0:33:93.29:0,93,1160 0/0:34,0:34:90.28:0,90,1129 0/0:74,0:75:99:0,208,2728 0/0:74,0:74:99:0,211,2750 0/1:35,24:59:99:684,0,969 0/0:61,0:61:99:0,166,2205 0/1:26,30:56:99:824,0,709 0/0:32,0:32:87.24:0,87,1082 0/0:31,0:31:90.28:0,90,1100 0/0:36,0:36:99:0,105,1272 0/0:46,0:46:99:0,126,1531 0/0:35,0:35:93.28:0,93,1157 0/0:32,0:32:93.25:0,93,1124 0/0:128,0:128:99:0,346,4272 0/0:34,0:34:96.28:0,96,1164 0/0:34,0:34:99:0,99,1213 0/0:34,0:34:99:0,99,1205 0/0:41,0:41:99:0,114,1386 0/0:40,0:40:99:0,111,1364 0/0:36,0:37:99:0,99,1171 0/0:21,0:21:57.17:0,57,707 0/0:86,0:86:99:0,226,2978 0/0:48,0:48:99:0,129,1706 0/0:62,0:62:99:0,165,2132 0/0:73,0:73:99:0,190,2519 0/0:20,0:20:57.18:0,57,697 0/0:35,0:35:96.29:0,96,1177 0/0:42,0:42:99:0,120,1456 0/1:21,17:38:99:436,0,631 0/0:30,0:30:84.27:0,84,1055 0/0:25,0:25:75.21:0,75,905 0/1:17,14:31:99:308,0,549 0/0:32,0:32:93.27:0,93,1106 0/0:36,0:36:99:0,102,1270 0/0:36,0:36:99:0,105,1271 0/0:39,0:39:96.30:0,96,1211 0/0:37,0:37:99:0,102,1272 0/0:44,0:44:99:0,120,1510 0/0:41,0:41:99:0,120,1447 0/0:33,0:33:93.29:0,93,1152 0/1:26,17:44:99:488,0,774 11 7694002 . G A 7815.04 . AC=11;AF=0.131;AN=84;BaseQRankSum=-10.814;DP=2722;Dels=0.00;FS=2.484;HRun=0;HaplotypeScore=1.6731;InbreedingCoeff=-0.1507;MQ=58.20;MQ0=0;MQRankSum=1.106;QD=12.42;ReadPosRankSum=1.724 GT:AD:DP:GQ:PL 0/1:28,24:52:99:636,0,793 0/1:33,23:56:99:547,0,958 0/0:53,0:53:99:0,144,1822 0/1:61,32:93:99:827,0,1807 0/1:36,45:81:99:1199,0,1026 0/0:114,0:114:99:0,283,3766 0/0:76,0:76:99:0,172,2357 0/0:66,0:66:99:0,150,2083 0/1:36,20:56:99:540,0,1034 0/0:48,0:48:99:0,126,1617 0/1:17,17:35:99:479,0,495 0/0:37,0:37:99:0,102,1289 0/0:41,0:41:99:0,111,1402 0/0:54,0:54:99:0,147,1849 0/0:164,0:165:99:0,385,4937 0/0:53,0:53:99:0,150,1880 0/1:32,30:62:99:895,0,913 0/0:53,0:54:99:0,141,1755 0/0:76,0:76:99:0,193,2394 0/0:103,0:103:99:0,256,3289 0/0:99,0:99:99:0,235,2964 0/0:64,0:64:99:0,166,2114 0/0:126,0:126:99:0,310,4168 0/0:76,0:76:99:0,181,2472 0/0:70,0:70:99:0,178,2319 0/0:85,0:85:99:0,205,2752 0/0:36,0:36:93.30:0,93,1200 0/0:41,0:41:99:0,123,1500 0/0:47,0:47:99:0,129,1588 0/1:17,35:52:99:1062,0,432 0/1:24,15:39:99:409,0,623 0/0:80,1:81:99:0,168,2592 0/1:32,25:57:99:644,0,906 0/0:41,0:41:99:0,102,1299 0/0:43,0:43:99:0,120,1502 0/1:25,21:46:99:577,0,720 0/0:79,0:81:99:0,199,2457 0/0:57,0:57:99:0,150,1859 0/0:56,0:56:99:0,156,1945 0/0:60,0:60:99:0,166,2087 0/0:38,0:38:99:0,99,1233 0/0:52,0:52:99:0,144,1855 11 7694013 . T G 1293.87 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.632;DP=2647;Dels=0.00;FS=5.276;HRun=0;HaplotypeScore=2.4166;InbreedingCoeff=-0.0244;MQ=58.19;MQ0=0;MQRankSum=0.896;QD=13.34;ReadPosRankSum=-0.579 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,120,1498 0/0:53,0:53:99:0,144,1753 0/0:50,0:50:99:0,129,1613 0/0:91,0:91:99:0,232,2899 0/0:82,0:82:99:0,208,2595 0/0:109,0:109:99:0,283,3627 0/0:70,0:70:99:0,178,2286 0/0:63,0:63:99:0,160,2036 0/0:57,0:57:99:0,147,1811 0/0:53,0:53:99:0,138,1676 0/0:43,0:43:99:0,105,1296 0/0:41,0:41:99:0,108,1342 0/0:39,0:39:99:0,108,1312 0/0:53,0:53:99:0,147,1812 0/0:156,1:157:99:0,388,4794 0/0:54,0:54:99:0,147,1768 0/0:68,0:69:99:0,175,2128 0/0:52,0:52:99:0,141,1691 0/0:68,0:68:99:0,181,2215 0/0:104,0:105:99:0,256,3209 0/0:91,0:91:99:0,217,2755 0/0:64,0:64:99:0,171,2074 0/0:118,0:118:99:0,295,3701 0/0:72,0:72:99:0,184,2346 0/0:63,0:63:99:0,169,2126 0/0:78,0:78:99:0,205,2519 0/0:33,0:33:90.24:0,90,1069 0/0:45,0:45:99:0,117,1434 0/0:45,0:45:99:0,120,1474 0/0:50,0:50:99:0,135,1669 0/0:42,0:42:99:0,108,1362 0/0:69,0:69:99:0,187,2277 0/0:55,0:55:99:0,147,1794 0/0:37,0:37:99:0,99,1186 0/0:46,0:46:99:0,123,1520 0/0:44,0:44:99:0,117,1415 0/0:79,0:79:99:0,214,2593 0/0:52,0:52:99:0,141,1709 0/0:56,0:56:99:0,144,1739 0/1:32,28:60:99:855,0,873 0/1:20,17:37:99:501,0,508 0/0:55,0:55:99:0,159,1898 11 7712471 . C T 7078.07 . AC=47;AF=0.560;AN=84;BaseQRankSum=-9.229;DP=410;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7149;InbreedingCoeff=-0.1954;MQ=58.72;MQ0=0;MQRankSum=0.196;QD=20.28;ReadPosRankSum=0.447 GT:AD:DP:GQ:PL 1/1:0,5:5:15.04:168,15,0 1/1:0,5:5:15.04:173,15,0 0/1:3,2:5:51.82:52,0,99 0/1:5,7:12:99:214,0,156 1/1:0,30:30:90.27:1083,90,0 0/0:12,0:12:36.11:0,36,471 0/1:8,8:16:99:231,0,267 0/0:14,0:14:42.13:0,42,550 1/1:0,2:3:6.02:72,6,0 0/1:7,6:13:99:174,0,206 0/1:5,3:8:88.17:88,0,128 0/1:5,1:6:18.07:18,0,169 0/1:0,1:1:1.76:36,3,0 0/1:6,4:10:90.80:91,0,176 0/1:13,7:20:99:162,0,348 0/1:4,5:9:99:147,0,116 0/1:1,4:5:22.75:123,0,23 1/1:0,7:7:21.06:251,21,0 1/1:0,22:22:66.20:798,66,0 0/1:8,5:13:99:115,0,260 0/1:6,3:9:82.16:82,0,189 0/0:9,0:9:27.08:0,27,329 0/1:5,8:13:99:245,0,158 1/1:0,8:8:24.07:290,24,0 0/1:7,2:9:44.26:44,0,243 0/1:1,4:5:26.18:131,0,26 1/1:0,3:3:9.03:107,9,0 1/1:0,12:12:33.10:400,33,0 0/1:3,3:6:88.53:89,0,94 0/0:7,0:7:21.07:0,21,260 0/0:7,0:7:21.07:0,21,259 1/1:0,15:15:42.13:516,42,0 0/0:12,0:12:33.10:0,33,411 0/1:6,3:9:82.54:83,0,166 0/1:3,3:6:83.92:84,0,92 0/1:5,5:10:93.74:156,0,94 0/1:5,9:14:99:275,0,145 1/1:0,9:9:27.08:310,27,0 0/1:6,4:10:48.51:49,0,161 0/1:4,3:7:81.85:82,0,131 0/1:4,1:5:21.08:21,0,131 0/1:5,4:9:99:118,0,132 11 7712475 . AGAGTT A 357.81 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.820;DP=465;FS=3.050;HRun=0;HaplotypeScore=70.0756;InbreedingCoeff=-0.0308;MQ=58.81;MQ0=0;MQRankSum=-1.198;QD=29.82;ReadPosRankSum=-0.566 GT:AD:DP:GQ:PL 0/0:7,0:7:21.07:0,21,608 0/1:1,4:5:81.97:231,0,82 0/1:3,4:7:99:199,0,270 0/0:15,0:15:45.15:0,45,1454 0/0:34,0:34:99:0,102,3275 0/0:11,0:11:33.11:0,33,1067 0/0:17,0:17:51.18:0,51,1646 0/0:16,0:16:42.14:0,42,1332 0/0:5,0:5:12.04:0,12,387 0/0:13,0:13:39.13:0,39,1251 0/0:9,0:9:27.09:0,27,873 0/0:8,0:8:24.08:0,24,773 0/0:2,0:2:6.02:0,6,194 0/0:10,0:10:27.09:0,27,873 0/0:26,0:26:72.25:0,72,2237 0/0:11,0:11:33.11:0,33,1016 0/0:6,0:6:18.06:0,18,573 0/0:8,0:8:24.08:0,24,776 0/0:32,0:32:93.32:0,93,2936 0/0:12,0:12:36.12:0,36,1164 0/0:13,0:13:39.13:0,39,1193 0/0:9,0:9:27.09:0,27,873 0/0:14,0:14:42.14:0,42,1359 0/0:9,0:9:27.09:0,27,873 0/0:12,0:12:36.12:0,36,1161 0/0:6,0:6:18.06:0,18,582 0/0:3,0:3:9.03:0,9,192 0/0:13,0:13:39.13:0,39,1242 0/0:7,0:7:21.07:0,21,629 0/0:8,0:8:24.08:0,24,725 0/0:7,0:7:21.07:0,21,679 0/0:15,0:15:45.15:0,45,1455 0/0:13,0:13:39.13:0,39,1206 0/0:10,0:10:30.10:0,30,970 0/0:6,0:6:18.06:0,18,580 0/0:10,0:10:27.09:0,27,805 0/0:14,0:14:39.13:0,39,1200 0/0:9,0:9:27.09:0,27,810 0/0:12,0:12:33.11:0,33,1067 0/0:6,0:6:18.06:0,18,539 0/0:5,0:5:15.05:0,15,485 0/0:10,0:10:30.10:0,30,970 11 7712523 . G A 5163.27 . AC=16;AF=0.190;AN=84;BaseQRankSum=-16.975;DP=975;Dels=0.00;FS=3.087;HRun=0;HaplotypeScore=0.5087;InbreedingCoeff=-0.0811;MQ=59.12;MQ0=0;MQRankSum=1.514;QD=15.28;ReadPosRankSum=-0.019 GT:AD:DP:GQ:PL 0/0:13,0:13:39.12:0,39,480 0/0:8,0:8:24.07:0,24,290 0/0:16,0:16:48.15:0,48,618 0/1:17,15:32:99:398,0,598 0/0:57,0:57:99:0,163,2222 0/0:31,0:31:90.30:0,90,1232 0/0:37,0:37:99:0,99,1375 0/0:44,0:44:99:0,126,1751 0/0:20,0:20:54.17:0,54,692 0/0:14,0:14:42.13:0,42,530 0/1:6,9:15:99:257,0,157 0/0:23,0:23:66.21:0,66,835 0/0:10,0:10:27.09:0,27,351 0/0:23,0:23:69.22:0,69,873 0/0:59,0:59:99:0,160,2058 0/1:5,10:15:99:306,0,142 0/0:20,0:20:60.19:0,60,758 0/0:14,0:14:42.13:0,42,533 0/0:41,0:41:99:0,117,1467 0/1:12,17:29:99:450,0,329 0/0:27,0:27:72.22:0,72,911 0/1:12,12:24:99:344,0,358 0/1:27,27:54:99:784,0,949 0/0:24,0:24:72.23:0,72,974 0/1:15,17:32:99:467,0,524 0/1:12,10:22:99:286,0,344 0/0:18,0:18:54.15:0,54,663 0/0:12,0:12:36.12:0,36,458 0/0:15,0:15:45.14:0,45,574 0/1:7,6:13:99:171,0,192 1/1:0,17:17:51.15:594,51,0 0/0:25,0:25:69.22:0,69,899 0/1:11,8:19:99:213,0,352 0/1:8,11:19:99:339,0,242 0/0:17,0:17:51.16:0,51,647 0/1:4,5:9:99:156,0,99 0/1:15,14:29:99:355,0,458 0/0:20,0:20:54.17:0,54,696 0/1:7,2:9:42.52:43,0,244 0/0:13,0:13:36.12:0,36,457 0/0:15,0:15:45.14:0,45,557 0/0:21,0:21:60.16:0,60,736 11 7712561 . T A 9460.08 . AC=16;AF=0.190;AN=84;BaseQRankSum=8.229;DP=1691;Dels=0.00;FS=2.450;HRun=1;HaplotypeScore=0.7811;InbreedingCoeff=-0.0809;MQ=59.19;MQ0=0;MQRankSum=-1.843;QD=14.99;ReadPosRankSum=0.654 GT:AD:DP:GQ:PL 0/0:26,0:26:72.21:0,72,863 0/0:21,0:21:51.16:0,51,645 0/0:22,0:22:63.18:0,63,746 0/1:37,34:71:99:962,0,1055 0/0:89,0:89:99:0,244,3000 0/0:55,0:55:99:0,141,1821 0/0:54,0:54:99:0,138,1777 0/0:66,0:66:99:0,169,2132 0/0:30,0:30:81.24:0,81,967 0/0:24,0:24:69.21:0,69,817 0/1:13,10:23:99:249,0,378 0/0:37,0:37:99:0,102,1228 0/0:19,0:19:51.16:0,51,624 0/0:34,0:34:90.28:0,90,1120 0/0:121,0:121:99:0,316,3852 0/1:10,15:25:99:459,0,251 0/0:29,0:29:78.23:0,78,954 0/0:23,0:23:66.20:0,66,805 0/0:63,0:63:99:0,156,1951 0/1:26,36:62:99:940,0,633 0/0:52,0:52:99:0,141,1732 0/1:20,17:37:99:453,0,501 0/1:50,45:95:99:1263,0,1474 0/0:48,0:48:99:0,129,1610 0/1:24,32:56:99:958,0,634 0/1:30,22:52:99:628,0,903 0/0:19,0:19:54.17:0,54,656 0/0:11,0:11:30.09:0,30,357 0/0:24,0:24:66.20:0,66,809 0/1:11,12:23:99:369,0,325 1/1:0,34:34:96.27:1133,96,0 0/0:52,0:52:99:0,141,1739 0/1:18,18:36:99:468,0,501 0/1:15,21:36:99:609,0,422 0/0:31,0:31:81.25:0,81,1002 0/1:18,8:26:99:198,0,508 0/1:19,18:37:99:475,0,557 0/0:34,0:34:99:0,99,1181 0/1:8,10:18:99:298,0,222 0/0:23,0:23:60.19:0,60,747 0/0:24,0:24:69.21:0,69,832 0/0:29,0:29:78.24:0,78,953 11 7721870 . G A 54293.73 . AC=73;AF=0.869;AN=84;BaseQRankSum=-15.096;DP=1957;Dels=0.00;FS=1.306;HRun=2;HaplotypeScore=0.8386;InbreedingCoeff=0.0585;MQ=59.00;MQ0=0;MQRankSum=4.052;QD=28.15;ReadPosRankSum=-1.106 GT:AD:DP:GQ:PL 1/1:0,36:36:96.27:1168,96,0 1/1:0,35:35:96.26:1158,96,0 1/1:0,25:25:72.22:876,72,0 1/1:0,53:53:99:1801,147,0 1/1:0,66:66:99:2218,178,0 0/1:27,29:56:99:836,0,774 1/1:0,53:53:99:1729,138,0 0/1:31,25:56:99:623,0,946 1/1:0,31:31:93.28:1106,93,0 1/1:0,35:35:93.28:1132,93,0 0/1:16,14:30:99:402,0,455 1/1:0,35:35:99:1201,99,0 1/1:0,28:28:72.23:907,72,0 0/1:16,17:33:99:495,0,502 1/1:0,108:109:99:3259,262,0 1/1:0,25:25:75.23:906,75,0 1/1:0,32:32:84.26:1038,84,0 1/1:0,34:34:96.29:1166,96,0 1/1:0,60:60:99:2053,166,0 1/1:0,72:72:99:2414,196,0 0/1:44,43:87:99:1155,0,1220 0/1:28,24:52:99:600,0,822 1/1:0,86:86:99:2666,208,0 1/1:0,47:47:99:1530,117,0 0/1:36,26:62:99:693,0,1005 1/1:0,53:53:99:1632,126,0 1/1:0,27:27:72.23:900,72,0 1/1:0,31:31:84.24:1034,84,0 1/1:0,31:31:90.27:1083,90,0 0/0:28,0:28:78.21:0,78,971 0/1:21,15:36:99:445,0,564 1/1:0,66:66:99:2193,178,0 0/1:28,32:60:99:906,0,777 1/1:0,35:35:96.29:1181,96,0 1/1:0,45:45:99:1539,126,0 1/1:1,32:33:87.27:1073,87,0 1/1:1,67:68:99:2344,196,0 1/1:0,35:35:93.29:1159,93,0 1/1:0,45:45:99:1520,123,0 1/1:0,47:47:99:1551,126,0 1/1:0,42:42:99:1318,105,0 1/1:0,37:37:99:1285,105,0 11 7727872 . T C 3452.57 . AC=16;AF=0.190;AN=84;BaseQRankSum=8.726;DP=683;Dels=0.00;FS=1.231;HRun=0;HaplotypeScore=0.2476;InbreedingCoeff=-0.0766;MQ=59.08;MQ0=0;MQRankSum=1.248;QD=14.21;ReadPosRankSum=-0.161 GT:AD:DP:GQ:PL 0/0:12,0:12:33.10:0,33,409 0/0:16,0:18:42.12:0,42,513 0/1:7,3:10:75.59:76,0,198 0/0:15,0:15:30.09:0,30,392 0/0:11,0:11:27.08:0,27,348 0/0:11,0:11:27.09:0,27,354 0/0:12,0:12:30.10:0,30,396 0/0:14,0:14:27.09:0,27,365 0/1:8,8:16:99:222,0,204 0/0:16,0:16:36.12:0,36,471 0/1:7,7:14:99:230,0,185 0/0:15,0:15:39.12:0,39,496 0/1:13,1:14:6.21:6,0,357 0/0:12,0:12:36.11:0,36,438 0/1:22,25:47:99:798,0,552 0/1:3,8:11:75.17:274,0,75 0/1:6,4:10:99:129,0,162 0/1:4,2:6:48.40:48,0,121 0/0:25,0:26:66.19:0,66,809 0/0:25,0:25:66.20:0,66,815 0/0:28,0:29:75.23:0,75,914 0/0:18,0:18:42.13:0,42,534 0/0:9,0:9:27.08:0,27,318 0/0:10,0:10:27.09:0,27,348 0/0:20,0:20:48.15:0,48,631 0/1:6,11:17:99:362,0,178 0/0:18,0:18:51.15:0,51,612 0/0:17,0:18:48.12:0,48,567 0/0:15,0:15:39.12:0,39,474 0/0:20,0:20:57.13:0,57,664 0/0:17,0:17:45.14:0,45,572 0/1:15,8:23:99:207,0,327 0/0:26,0:26:66.21:0,66,842 0/1:6,4:10:99:121,0,161 0/1:6,8:14:99:235,0,176 0/1:9,7:16:99:215,0,234 0/1:18,8:26:99:186,0,400 0/0:13,0:13:39.12:0,39,483 1/1:0,9:9:27.09:343,27,0 0/0:11,0:11:33.10:0,33,395 0/0:10,0:10:30.09:0,30,351 0/0:19,0:19:54.15:0,54,643 11 7727886 . C T 8803.52 . 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C T 102769.08 . 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T C 7085.34 . 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A G 13301.41 . 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G T 38.47 . 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G C 32772.59 . 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G T 655.02 . 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G T 4025.85 . 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T C 952.65 . 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C T 182.65 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.288;DP=709;Dels=0.00;FS=4.803;HRun=0;HaplotypeScore=0.4225;InbreedingCoeff=-0.0257;MQ=59.18;MQ0=0;MQRankSum=-0.539;QD=5.89;ReadPosRankSum=-0.064 GT:AD:DP:GQ:PL 0/0:23,0:23:51.14:0,51,662 0/0:10,0:10:27.08:0,27,339 0/0:13,0:13:39.12:0,39,496 0/0:12,0:12:30.10:0,30,403 0/0:19,0:19:48.16:0,48,660 0/0:22,0:22:57.18:0,57,760 0/0:10,0:10:27.07:0,27,337 0/0:10,0:10:21.07:0,21,296 0/0:12,0:12:36.11:0,36,454 0/0:20,0:20:54.15:0,54,672 0/0:16,0:16:42.13:0,42,538 0/0:8,0:8:18.05:0,18,225 0/0:11,0:11:33.11:0,33,422 0/0:20,0:20:60.19:0,60,747 0/0:40,0:40:99:0,99,1271 0/0:9,0:9:24.07:0,24,290 0/0:20,0:20:57.18:0,57,728 0/0:15,0:15:45.14:0,45,559 0/0:20,0:21:51.16:0,51,638 0/0:24,0:24:63.20:0,63,809 0/0:27,0:27:78.23:0,78,967 0/0:25,0:25:66.20:0,66,828 0/0:21,0:21:57.15:0,57,735 0/0:6,0:6:15.05:0,15,209 0/0:30,0:30:78.26:0,78,1070 0/0:6,0:6:15.05:0,15,205 0/0:11,0:11:27.09:0,27,348 0/0:20,0:20:54.17:0,54,672 0/0:11,0:11:30.10:0,30,392 0/0:14,0:14:33.07:0,33,393 0/0:16,0:16:39.13:0,39,515 0/0:28,0:28:72.23:0,72,947 0/0:25,0:25:69.22:0,69,873 0/0:10,0:10:27.09:0,27,355 0/0:9,0:9:27.09:0,27,344 0/0:23,0:23:57.18:0,57,734 0/1:14,7:21:99:190,0,380 0/1:7,3:10:54.66:55,0,234 0/0:16,0:16:33.10:0,33,438 0/0:19,0:19:48.15:0,48,601 0/0:14,0:14:42.13:0,42,520 0/0:12,0:12:33.11:0,33,431 11 10655609 . C T 28336.76 . 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T C 17412.51 . 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C T 123227.01 . 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C G 1482.12 . 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G A 3171.91 . 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T C 2647.52 . 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G C 2396.46 . 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T C 107046.15 . AC=59;AF=0.702;AN=84;BaseQRankSum=28.978;DP=4719;DS;Dels=0.00;FS=9.638;HRun=3;HaplotypeScore=1.5995;InbreedingCoeff=0.2597;MQ=58.14;MQ0=2;MQRankSum=0.231;QD=26.93;ReadPosRankSum=-4.713 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2449,196,0 1/1:0,66:66:99:2445,199,0 1/1:0,59:59:99:2097,169,0 1/1:0,250:250:99:9918,743,0 1/1:0,249:249:99:9817,737,0 0/1:136,105:241:99:3287,0,4325 0/1:105,75:181:99:2418,0,3289 0/1:129,106:235:99:3365,0,3989 1/1:1,60:61:99:2128,172,0 0/1:28,37:65:99:1136,0,781 0/1:43,25:68:99:697,0,1291 0/1:35,33:68:99:1029,0,1016 0/1:30,24:54:99:671,0,881 0/0:78,4:82:99:0,235,2829 1/1:0,243:243:99:8792,719,0 1/1:0,65:65:99:2388,193,0 1/1:0,79:79:99:2739,220,0 0/0:62,0:62:99:0,181,2173 0/0:145,3:148:99:0,418,5001 0/1:55,74:129:99:2147,0,1591 0/1:85,62:147:99:1720,0,2461 1/1:2,76:78:99:2762,192,0 0/1:132,118:250:99:3868,0,4038 0/1:107,101:208:99:3182,0,3184 0/0:249,1:250:99:0,687,8943 1/1:1,200:201:99:7677,553,0 1/1:0,55:55:99:1940,156,0 1/1:0,52:52:99:1894,153,0 1/1:0,65:65:99:2390,193,0 1/1:0,68:68:99:2333,190,0 1/1:0,72:72:99:2655,214,0 0/0:131,2:134:99:0,382,4600 1/1:0,75:75:99:2771,220,0 0/1:28,21:49:99:580,0,852 0/0:68,0:68:99:0,205,2473 1/1:0,76:76:99:2630,214,0 1/1:0,107:107:99:3843,319,0 1/1:0,63:63:99:2120,175,0 0/1:30,21:51:99:610,0,911 1/1:0,65:66:99:2390,196,0 1/1:0,39:39:99:1453,117,0 1/1:0,72:72:99:2707,217,0 11 11986113 . C T 3338.52 . 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C CTT 12107.53 . 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TGCGCACTGCCA T 7849.38 . 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T G 57937.84 . 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A G 604.67 . 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G C 10457.37 . 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G A 573.07 . 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C G 976.65 . 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T C 1059.14 . 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T TC 2158.42 . 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T C 721.31 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.335;DP=3712;Dels=0.00;FS=5.694;HRun=1;HaplotypeScore=1.7301;InbreedingCoeff=-0.0120;MQ=59.30;MQ0=0;MQRankSum=1.262;QD=11.27;ReadPosRankSum=-1.658 GT:AD:DP:GQ:PL 0/0:79,0:79:99:0,220,2707 0/0:82,0:82:99:0,217,2704 0/0:52,0:52:99:0,141,1734 0/0:171,0:171:99:0,448,5801 0/0:136,0:136:99:0,349,4559 0/0:124,0:124:99:0,316,4185 0/0:114,0:114:99:0,280,3743 0/0:110,0:110:99:0,277,3667 0/0:74,0:75:99:0,199,2497 0/0:75,0:75:99:0,208,2582 0/0:71,0:71:99:0,202,2504 0/0:92,0:92:99:0,244,3091 0/0:55,0:55:99:0,150,1909 0/1:37,27:64:99:768,0,1066 0/0:245,0:245:99:0,626,7890 0/0:60,0:60:99:0,163,2015 0/0:76,3:80:99:0,184,2665 0/0:73,0:73:99:0,205,2532 0/0:98,2:100:99:0,220,3272 0/0:111,0:111:99:0,295,3744 0/0:86,0:88:99:0,241,2982 0/0:58,0:58:99:0,156,1953 0/0:133,0:133:99:0,337,4408 0/0:93,0:93:99:0,247,3252 0/0:119,0:119:99:0,307,4051 0/0:120,0:120:99:0,286,3839 0/0:61,0:61:99:0,178,2199 0/0:82,0:82:99:0,235,2905 0/0:69,0:69:99:0,187,2323 0/0:68,1:69:99:0,156,2290 0/0:57,0:57:99:0,156,1983 0/0:93,0:93:99:0,256,3261 0/0:56,0:57:99:0,150,1865 0/0:69,0:69:99:0,184,2295 0/0:71,0:71:99:0,184,2330 0/0:76,0:76:99:0,211,2630 0/0:82,0:82:99:0,220,2728 0/0:56,0:56:99:0,153,1911 0/0:78,0:78:99:0,223,2761 0/0:69,0:69:99:0,196,2416 0/0:67,0:67:99:0,172,2176 0/0:76,0:76:99:0,211,2647 11 12277195 . G A 676.05 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.800;DP=1366;Dels=0.00;FS=6.563;HRun=0;HaplotypeScore=0.6126;InbreedingCoeff=-0.0244;MQ=59.07;MQ0=0;MQRankSum=0.454;QD=10.09;ReadPosRankSum=0.686 GT:AD:DP:GQ:PL 0/0:21,0:21:57.16:0,57,673 0/0:33,0:33:93.23:0,93,1048 0/0:35,0:35:90.23:0,90,1030 0/0:62,0:62:99:0,147,1875 0/0:45,0:45:99:0,120,1485 0/1:20,13:33:99:308,0,536 0/0:36,0:36:87.26:0,87,1063 0/1:16,18:34:99:430,0,411 0/0:37,0:37:90.26:0,90,1085 0/0:23,0:23:63.19:0,63,759 0/0:29,0:29:72.19:0,72,857 0/0:24,0:24:69.19:0,69,793 0/0:22,0:22:57.13:0,57,635 0/0:22,0:22:57.16:0,57,666 0/0:78,0:78:99:0,196,2322 0/0:35,0:35:99:0,99,1097 0/0:33,0:33:93.26:0,93,1072 0/0:34,0:34:78.20:0,78,885 0/0:35,0:35:93.24:0,93,1037 0/0:42,0:42:99:0,108,1296 0/0:39,0:39:99:0,99,1155 0/0:15,0:15:39.11:0,39,466 0/0:34,0:34:99:0,99,1203 0/0:29,0:29:75.23:0,75,948 0/0:38,0:38:99:0,111,1374 0/0:26,0:26:63.18:0,63,771 0/0:13,0:13:39.10:0,39,442 0/0:37,0:37:93.26:0,93,1096 0/0:29,0:29:78.22:0,78,916 0/0:43,0:43:99:0,108,1288 0/0:35,0:35:99:0,102,1157 0/0:35,0:35:99:0,105,1207 0/0:27,0:27:75.19:0,75,862 0/0:20,0:20:54.15:0,54,638 0/0:27,0:27:78.20:0,78,893 0/0:28,0:28:78.21:0,78,903 0/0:26,0:26:72.20:0,72,838 0/0:35,0:35:93.26:0,93,1097 0/0:27,0:27:72.20:0,72,840 0/0:32,0:32:87.24:0,87,1011 0/0:27,0:27:69.18:0,69,798 0/0:31,0:31:78.22:0,78,928 11 12281438 . C T 1028.75 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.304;DP=1087;Dels=0.00;FS=15.834;HRun=0;HaplotypeScore=0.6009;InbreedingCoeff=-0.0245;MQ=58.76;MQ0=0;MQRankSum=0.562;QD=17.44;ReadPosRankSum=1.514 GT:AD:DP:GQ:PL 0/0:19,0:20:54.16:0,54,660 0/0:21,0:21:54.17:0,54,694 0/0:8,0:8:24.07:0,24,297 0/0:48,0:48:99:0,135,1772 0/0:38,0:38:99:0,105,1389 0/1:9,17:26:99:498,0,287 0/0:27,0:27:81.26:0,81,1063 0/1:14,19:33:99:594,0,455 0/0:30,0:30:84.24:0,84,1044 0/0:24,0:24:63.16:0,63,758 0/0:14,0:14:42.13:0,42,513 0/0:16,0:16:48.13:0,48,577 0/0:13,0:13:36.11:0,36,448 0/0:23,0:23:63.19:0,63,787 0/0:65,0:65:99:0,181,2236 0/0:15,0:15:42.10:0,42,519 0/0:14,0:14:42.13:0,42,530 0/0:15,0:15:42.12:0,42,506 0/0:37,0:37:99:0,99,1218 0/0:40,0:40:99:0,114,1452 0/0:44,0:44:99:0,123,1471 0/0:31,0:31:84.27:0,84,1075 0/0:68,0:68:99:0,193,2517 0/0:25,0:25:75.24:0,75,1003 0/0:41,0:41:99:0,117,1521 0/0:21,0:21:63.18:0,63,815 0/0:14,0:14:27.08:0,27,344 0/0:22,0:22:60.17:0,60,712 0/0:23,0:23:60.19:0,60,765 0/0:20,0:21:57.18:0,57,705 0/0:18,0:18:54.17:0,54,680 0/0:36,0:36:99:0,105,1318 0/0:32,0:32:87.27:0,87,1116 0/0:15,0:15:45.14:0,45,568 0/0:21,0:21:48.15:0,48,623 0/0:12,0:12:36.10:0,36,439 0/0:23,0:23:60.17:0,60,719 0/0:17,0:17:51.15:0,51,626 0/0:24,0:24:66.20:0,66,807 0/0:15,0:15:42.14:0,42,553 0/0:18,0:18:51.15:0,51,636 0/0:19,0:19:51.16:0,51,663 11 12379949 . C T 2845.25 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.071;DP=10101;DS;Dels=0.00;FS=9.816;HRun=0;HaplotypeScore=4.1141;InbreedingCoeff=-0.0120;MQ=59.50;MQ0=0;MQRankSum=0.994;QD=11.57;ReadPosRankSum=-0.319 GT:AD:DP:GQ:PL 0/0:243,0:243:99:0,677,7723 0/0:250,0:250:99:0,653,7714 0/0:214,0:214:99:0,581,6725 0/0:249,0:250:99:0,686,8608 0/0:250,0:250:99:0,692,8804 0/0:249,1:250:99:0,657,8606 0/0:238,1:239:99:0,615,8152 0/0:250,0:250:99:0,683,8641 0/0:230,0:231:99:0,623,7290 0/0:227,1:228:99:0,567,7043 0/0:243,0:244:99:0,644,7565 0/0:241,0:242:99:0,680,7833 0/0:210,0:210:99:0,545,6444 0/0:228,0:228:99:0,635,7246 0/0:247,0:250:99:0,683,7750 0/0:235,0:235:99:0,632,7353 0/0:245,0:245:99:0,692,7945 0/0:247,0:247:99:0,677,7790 0/0:250,0:250:99:0,695,7993 0/0:249,0:250:99:0,695,8061 0/0:248,0:250:99:0,668,7745 0/0:240,0:240:99:0,641,7402 0/0:249,0:250:99:0,692,8883 0/0:243,0:243:99:0,656,8397 0/0:249,0:250:99:0,665,8491 0/0:243,0:243:99:0,632,8090 0/0:193,1:194:99:0,521,6165 0/0:243,0:243:99:0,671,7773 0/0:245,0:245:99:0,635,7567 0/0:240,0:241:99:0,626,7362 0/0:239,0:239:99:0,662,7687 0/0:249,0:250:99:0,686,7934 0/0:248,0:248:99:0,674,7841 0/0:219,1:220:99:0,560,6836 0/0:249,0:249:99:0,671,7876 0/0:242,0:243:99:0,665,7813 0/0:250,0:250:99:0,692,7903 0/0:233,0:235:99:0,641,7318 0/0:241,0:241:99:0,668,7819 0/0:242,0:242:99:0,662,7670 0/0:231,1:233:99:0,611,7117 0/1:135,109:246:99:2891,0,3563 11 12525925 . C T 3847.27 . AC=7;AF=0.083;AN=84;BaseQRankSum=0.050;DP=2033;Dels=0.00;FS=6.054;HRun=0;HaplotypeScore=1.0741;InbreedingCoeff=-0.0909;MQ=59.27;MQ0=0;MQRankSum=0.537;QD=13.22;ReadPosRankSum=-0.867 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,102,1178 0/0:38,0:38:99:0,102,1184 0/0:47,0:47:99:0,123,1459 0/0:72,0:72:99:0,184,2350 0/0:69,0:69:99:0,178,2295 0/0:73,0:73:99:0,178,2268 0/0:53,0:53:99:0,123,1628 0/0:61,0:61:99:0,150,2000 0/0:33,0:33:90.24:0,90,1036 0/0:41,0:41:99:0,114,1322 0/0:33,0:33:81.21:0,81,974 0/0:40,0:40:99:0,108,1277 0/1:8,13:21:99:338,0,216 0/0:35,0:35:84.24:0,84,1033 0/0:131,0:131:99:0,322,3905 0/0:35,0:35:99:0,99,1172 0/0:32,0:32:84.24:0,84,995 0/0:45,0:45:99:0,126,1478 0/0:70,0:71:99:0,193,2225 0/0:73,0:73:99:0,187,2222 0/1:37,36:74:99:1046,0,873 0/1:20,16:36:99:404,0,527 0/0:69,0:71:99:0,172,2261 0/0:45,0:45:99:0,111,1387 0/0:54,0:54:99:0,132,1690 0/0:54,0:54:99:0,141,1786 0/0:28,0:28:63.19:0,63,787 0/0:43,0:43:99:0,111,1342 0/0:31,0:31:87.22:0,87,997 0/1:18,21:39:99:558,0,427 0/0:31,0:31:87.22:0,87,1024 0/0:83,0:84:99:0,211,2568 0/1:29,18:47:99:439,0,757 0/0:26,0:26:69.16:0,69,812 0/0:38,0:38:99:0,105,1195 0/0:37,0:37:96.27:0,96,1149 0/0:69,0:69:99:0,162,1956 0/0:31,0:31:81.23:0,81,942 0/0:47,0:47:99:0,120,1462 0/1:17,14:31:99:395,0,407 0/0:33,0:33:87.23:0,87,1026 0/1:18,25:43:99:668,0,480 11 12535573 . G A 151.97 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.540;DP=2099;Dels=0.00;FS=1.205;HRun=2;HaplotypeScore=0.9217;InbreedingCoeff=-0.0120;MQ=55.61;MQ0=1;MQRankSum=1.560;QD=4.00;ReadPosRankSum=-1.246 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,135,1702 0/0:51,0:51:99:0,126,1616 0/0:53,0:53:99:0,144,1814 0/0:61,0:61:99:0,160,2095 0/0:36,0:36:93.30:0,93,1234 0/0:35,0:35:87.28:0,87,1176 0/0:42,0:42:99:0,102,1352 0/0:38,0:38:99:0,102,1327 0/0:36,0:36:99:0,102,1259 0/0:34,0:34:99:0,102,1249 0/0:38,0:38:99:0,108,1332 0/0:38,0:39:99:0,111,1388 0/0:50,0:50:99:0,129,1664 0/1:28,10:38:99:198,0,820 0/0:143,0:143:99:0,358,4586 0/0:46,0:46:99:0,123,1584 0/0:40,0:41:99:0,105,1320 0/0:48,0:48:99:0,135,1667 0/0:75,0:75:99:0,190,2373 0/0:100,0:102:99:0,232,2978 0/0:87,0:87:99:0,229,2889 0/0:53,0:53:99:0,129,1692 0/0:54,0:54:99:0,138,1905 0/0:35,0:35:90.29:0,90,1215 0/0:33,0:33:81.26:0,81,1064 0/0:27,0:27:72.22:0,72,933 0/0:29,0:29:81.25:0,81,1007 0/0:36,0:36:96.30:0,96,1211 0/0:37,0:37:96.27:0,96,1220 0/0:40,0:40:99:0,105,1344 0/0:36,0:36:99:0,102,1283 0/0:81,0:81:99:0,208,2639 0/0:57,0:57:99:0,147,1870 0/0:47,0:47:99:0,126,1592 0/0:37,0:37:99:0,105,1319 0/0:51,0:51:99:0,123,1619 0/0:61,0:61:99:0,153,1951 0/0:39,0:39:99:0,111,1380 0/0:43,0:43:99:0,120,1517 0/0:49,0:49:99:0,126,1604 0/0:59,0:59:99:0,144,1891 0/0:53,0:53:99:0,132,1727 11 13441126 . A G 18548.94 . 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G T 17151.83 . AC=16;AF=0.190;AN=84;BaseQRankSum=7.811;DP=3407;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.3953;InbreedingCoeff=0.2279;MQ=59.15;MQ0=0;MQRankSum=-0.136;QD=18.34;ReadPosRankSum=0.901 GT:AD:DP:GQ:PL 0/0:76,0:76:99:0,205,2383 0/0:53,0:53:99:0,141,1660 0/0:41,0:41:99:0,111,1286 0/0:165,0:165:99:0,439,5364 0/0:144,0:144:99:0,409,5120 0/0:131,0:131:99:0,352,4383 0/0:103,0:103:99:0,283,3495 0/0:137,0:137:99:0,364,4468 1/1:0,66:66:99:2186,178,0 0/1:33,21:54:99:610,0,945 0/1:33,29:62:99:746,0,873 0/0:60,0:60:99:0,174,1964 0/0:37,0:37:99:0,111,1244 0/1:21,29:50:99:866,0,558 0/1:93,88:181:99:2332,0,2427 0/0:43,0:43:99:0,129,1433 0/1:36,40:76:99:1201,0,924 0/0:55,0:55:99:0,150,1732 0/0:90,1:91:99:0,238,2762 0/0:92,0:92:99:0,259,2942 0/0:104,2:106:99:0,253,3226 0/1:34,35:69:99:1008,0,874 0/0:176,0:176:99:0,475,5920 0/1:55,35:90:99:1024,0,1589 0/0:147,0:147:99:0,397,5011 1/1:0,98:98:99:3290,259,0 0/0:46,0:46:99:0,132,1539 0/0:81,0:81:99:0,229,2655 0/0:46,0:46:99:0,129,1490 0/0:48,0:48:99:0,126,1487 0/1:20,18:38:99:526,0,497 0/0:88,0:88:99:0,247,2878 0/0:71,0:71:99:0,205,2401 0/0:75,0:75:99:0,208,2368 0/0:52,0:52:99:0,138,1630 0/0:76,0:76:99:0,217,2528 0/0:92,0:92:99:0,253,2928 0/0:51,0:51:99:0,144,1654 0/0:88,0:88:99:0,256,2951 1/1:1,49:50:99:1571,126,0 0/1:20,33:53:99:987,0,435 0/1:21,27:48:99:804,0,546 11 13716324 . C T 1918.38 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.918;DP=2778;Dels=0.00;FS=2.969;HRun=1;HaplotypeScore=0.9425;InbreedingCoeff=-0.0244;MQ=59.40;MQ0=0;MQRankSum=-0.058;QD=11.28;ReadPosRankSum=1.275 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,126,1573 0/0:45,0:45:99:0,108,1412 0/0:48,0:48:99:0,123,1588 0/0:108,0:108:99:0,286,3884 0/0:107,0:107:99:0,292,3936 0/0:79,0:80:99:0,223,3007 0/1:44,31:75:99:886,0,1336 0/1:55,40:95:99:1095,0,1694 0/0:46,0:46:99:0,126,1636 0/0:49,0:49:99:0,132,1668 0/0:66,0:66:99:0,181,2311 0/0:54,0:54:99:0,141,1832 0/0:44,0:44:99:0,117,1493 0/0:51,0:51:99:0,141,1808 0/0:239,0:240:99:0,602,7822 0/0:46,0:46:99:0,120,1537 0/0:51,0:51:99:0,141,1748 0/0:43,0:43:99:0,120,1540 0/0:84,0:84:99:0,232,2948 0/0:59,0:59:99:0,163,2066 0/0:60,0:60:99:0,172,2164 0/0:45,0:45:99:0,129,1628 0/0:127,0:127:99:0,340,4635 0/0:96,0:96:99:0,253,3405 0/0:94,0:94:99:0,253,3427 0/0:112,0:112:99:0,283,3894 0/0:46,0:46:99:0,129,1641 0/0:60,0:60:99:0,166,2063 0/0:48,0:48:99:0,126,1651 0/0:47,0:47:99:0,126,1628 0/0:48,0:48:99:0,138,1754 0/0:50,0:50:99:0,117,1547 0/0:36,0:36:99:0,99,1284 0/0:58,0:58:99:0,160,2033 0/0:56,0:56:99:0,162,2055 0/0:65,0:65:99:0,181,2333 0/0:43,0:43:99:0,111,1447 0/0:58,0:58:99:0,153,1963 0/0:51,0:51:99:0,135,1753 0/0:39,0:39:99:0,117,1488 0/0:58,0:58:99:0,157,2014 0/0:43,0:43:99:0,123,1547 11 14380365 . C G 13.93 . 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G A 14025.69 . AC=35;AF=0.417;AN=84;BaseQRankSum=7.089;DP=1151;Dels=0.00;FS=0.681;HRun=0;HaplotypeScore=0.9554;InbreedingCoeff=0.0693;MQ=58.52;MQ0=0;MQRankSum=1.306;QD=18.45;ReadPosRankSum=0.955 GT:AD:DP:GQ:PL 0/1:13,19:32:99:474,0,331 0/1:10,16:26:99:405,0,260 0/0:22,0:22:57.15:0,57,666 1/1:0,45:45:99:1436,114,0 0/1:19,16:35:99:394,0,496 0/0:37,0:37:90.28:0,90,1144 0/0:26,0:26:72.18:0,72,868 0/1:14,14:28:99:443,0,403 0/1:13,20:33:99:524,0,336 0/0:24,0:24:57.14:0,57,671 1/1:0,21:21:60.19:747,60,0 0/1:12,13:25:99:385,0,271 0/1:8,7:15:99:189,0,225 0/1:16,9:25:99:215,0,421 0/1:40,34:74:99:824,0,1054 0/1:16,17:33:99:499,0,441 0/1:12,10:22:99:284,0,313 0/0:25,0:25:66.18:0,66,788 0/0:32,0:32:78.20:0,78,906 0/0:40,0:40:93.27:0,93,1171 0/1:18,12:30:99:290,0,456 1/1:0,19:19:54.14:644,54,0 0/1:39,22:61:99:604,0,1134 1/1:0,18:18:48.15:616,48,0 1/1:0,26:26:69.20:868,69,0 1/1:1,25:26:27.46:803,27,0 0/1:8,10:18:99:313,0,227 1/1:0,22:22:63.19:766,63,0 0/0:20,0:20:45.13:0,45,563 0/1:10,6:16:99:132,0,279 0/1:12,8:20:99:229,0,382 0/0:31,1:32:69.20:0,69,849 1/1:0,24:24:66.17:795,66,0 0/0:18,0:18:51.15:0,51,626 0/1:11,16:27:99:456,0,302 0/1:8,10:18:99:290,0,235 0/0:26,0:26:72.20:0,72,833 0/0:23,0:23:60.16:0,60,702 0/0:23,0:23:60.17:0,60,712 0/0:26,0:26:72.20:0,72,846 0/0:17,0:17:42.12:0,42,514 0/1:7,14:21:99:401,0,172 11 17035706 . C T 298.30 . 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A G 9111.73 . 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T C 8370.34 . AC=9;AF=0.107;AN=84;BaseQRankSum=11.350;DP=3269;Dels=0.00;FS=11.879;HRun=0;HaplotypeScore=1.2345;InbreedingCoeff=0.1289;MQ=59.57;MQ0=0;MQRankSum=-0.195;QD=16.04;ReadPosRankSum=1.637 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,144,1795 0/0:64,0:64:99:0,175,2141 0/0:60,0:60:99:0,171,2075 0/0:137,0:137:99:0,367,4565 0/0:116,0:116:99:0,313,3957 0/0:128,0:128:99:0,361,4556 0/0:116,0:116:99:0,322,4047 0/0:101,0:101:99:0,277,3438 0/1:27,24:52:99:751,0,781 1/1:1,50:51:99:1805,144,0 0/0:57,0:57:99:0,159,1920 0/0:63,0:63:99:0,178,2125 0/0:62,0:62:99:0,172,2117 0/0:51,0:51:99:0,144,1750 0/0:210,1:211:99:0,521,6627 0/0:49,0:49:99:0,132,1621 0/0:49,0:49:99:0,144,1753 0/0:59,0:59:99:0,168,2009 0/1:52,33:85:99:884,0,1419 0/1:42,49:91:99:1495,0,1172 0/0:92,0:93:99:0,253,3090 0/0:45,0:45:99:0,126,1536 0/0:154,0:154:99:0,415,5222 0/0:101,0:101:99:0,289,3620 0/0:128,0:128:99:0,358,4454 0/0:110,0:110:99:0,304,3809 0/0:45,0:45:99:0,123,1544 0/0:65,0:65:99:0,175,2114 0/0:66,0:66:99:0,187,2239 0/1:26,37:63:99:1134,0,754 0/0:53,0:53:99:0,150,1816 0/0:81,0:81:99:0,208,2601 0/1:29,23:52:99:657,0,849 0/0:61,0:61:99:0,178,2159 0/0:62,0:63:99:0,166,2043 0/0:65,0:65:99:0,187,2271 0/1:30,35:65:99:1009,0,850 0/0:63,0:63:99:0,169,2051 0/1:39,24:63:99:635,0,1184 0/0:64,0:64:99:0,187,2259 0/0:54,0:54:99:0,147,1790 0/0:58,0:58:99:0,162,1993 11 17118730 . A G 2651.54 . 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T C 143657.46 . AC=83;AF=0.988;AN=84;BaseQRankSum=-3.939;DP=4450;DS;Dels=0.00;FS=12.885;HRun=0;HaplotypeScore=1.5488;InbreedingCoeff=-0.0120;MQ=59.46;MQ0=0;MQRankSum=-1.348;QD=32.28;ReadPosRankSum=-1.642 GT:AD:DP:GQ:PL 1/1:0,95:95:99:3075,268,0 1/1:0,85:85:99:2718,235,0 1/1:0,64:64:99:2107,183,0 1/1:0,202:202:99:6988,551,0 1/1:0,187:187:99:6399,503,0 1/1:0,198:198:99:7031,551,0 1/1:1,167:168:99:5713,414,0 1/1:0,183:183:99:6219,487,0 1/1:0,86:86:99:2743,238,0 1/1:0,77:77:99:2405,205,0 1/1:0,69:69:99:2369,205,0 1/1:0,87:87:99:2782,238,0 1/1:0,57:57:99:1770,156,0 1/1:0,80:80:99:2523,217,0 1/1:0,240:240:99:7724,665,0 1/1:0,53:53:99:1759,153,0 1/1:0,98:98:99:3073,256,0 1/1:0,81:81:99:2600,223,0 1/1:0,99:99:99:3136,265,0 1/1:0,93:93:99:2991,256,0 1/1:0,105:105:99:3460,301,0 1/1:0,52:52:99:1763,150,0 1/1:0,231:231:99:8316,644,0 1/1:0,187:187:99:6626,515,0 0/1:107,91:198:99:2691,0,3054 1/1:0,220:221:99:7447,578,0 1/1:0,57:57:99:1912,165,0 1/1:0,89:89:99:2926,256,0 1/1:0,62:62:99:2025,177,0 1/1:0,68:69:99:2230,193,0 1/1:0,64:64:99:2209,187,0 1/1:0,87:87:99:2844,244,0 1/1:0,88:88:99:2691,229,0 1/1:0,63:64:99:1951,171,0 1/1:0,65:65:99:2052,171,0 1/1:0,69:69:99:2303,196,0 1/1:0,86:86:99:2696,235,0 1/1:1,86:87:99:2792,208,0 1/1:0,62:62:99:2055,180,0 1/1:0,76:76:99:2354,205,0 1/1:0,46:47:99:1506,132,0 1/1:1,81:82:99:2686,200,0 11 17177089 . A C 2019.16 . AC=1;AF=0.012;AN=84;BaseQRankSum=11.460;DP=3160;Dels=0.00;FS=1.939;HRun=1;HaplotypeScore=0.7713;InbreedingCoeff=-0.0120;MQ=59.51;MQ0=1;MQRankSum=1.306;QD=14.63;ReadPosRankSum=0.022 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,168,2079 0/0:55,0:55:99:0,147,1851 0/0:40,0:40:99:0,111,1359 0/0:186,0:186:99:0,482,6111 0/0:174,0:174:99:0,469,5985 0/0:160,0:160:99:0,433,5570 0/0:142,0:142:99:0,376,4831 0/0:155,0:155:99:0,409,5172 0/0:61,0:61:99:0,162,2007 0/0:41,0:41:99:0,111,1375 0/0:46,0:46:99:0,129,1582 0/0:46,0:46:99:0,123,1535 0/0:48,0:48:99:0,138,1714 0/0:37,0:37:99:0,102,1273 0/0:195,0:195:99:0,503,6254 0/0:24,0:24:66.21:0,66,816 0/0:59,0:59:99:0,156,1960 0/0:45,0:45:99:0,126,1548 0/0:62,0:62:99:0,156,1976 0/0:41,0:41:99:0,99,1276 0/0:45,0:45:99:0,114,1428 0/0:36,0:36:99:0,99,1236 0/0:189,0:189:99:0,506,6390 0/0:167,0:167:99:0,454,5767 0/1:73,65:138:99:2065,0,2135 0/0:149,0:149:99:0,391,5003 0/0:35,0:36:93.26:0,93,1150 0/0:57,0:57:99:0,153,1873 0/0:31,0:31:84.27:0,84,1062 0/0:44,0:44:99:0,123,1503 0/0:49,0:49:99:0,132,1642 0/0:53,0:53:99:0,138,1737 0/0:25,0:25:63.20:0,63,792 0/0:55,0:55:99:0,156,1947 0/0:43,0:43:99:0,111,1419 0/0:52,0:52:99:0,147,1834 0/0:46,0:46:99:0,126,1555 0/0:58,0:58:99:0,165,1997 0/0:47,0:48:99:0,123,1523 0/0:50,0:50:99:0,138,1702 0/0:43,0:43:99:0,108,1361 0/0:65,0:65:99:0,175,2182 11 17352477 . TACA T 17040 . AC=19;AF=0.226;AN=84;BaseQRankSum=27.194;DP=1800;FS=1.893;HRun=0;HaplotypeScore=157.7709;InbreedingCoeff=-0.0202;MQ=59.07;MQ0=0;MQRankSum=-0.673;QD=19.36;ReadPosRankSum=2.178 GT:AD:DP:GQ:PL 1/1:3,34:37:99:1650,102,0 0/1:17,27:44:99:1126,0,812 0/0:42,0:42:99:0,114,2511 0/1:45,34:79:99:1434,0,2522 0/0:70,0:70:99:0,202,4461 0/1:43,32:75:99:1310,0,2208 0/1:29,28:57:99:1171,0,1579 0/1:31,27:56:99:1189,0,1522 0/0:35,0:35:96.33:0,96,2071 0/0:30,0:30:87.30:0,87,1935 0/0:24,0:24:69.23:0,69,1496 0/0:50,0:50:99:0,135,2974 0/1:19,10:29:99:412,0,995 0/0:24,0:24:69.24:0,69,1512 0/1:75,59:134:99:2462,0,4137 0/0:21,0:21:60.20:0,60,1287 1/1:5,24:29:72.25:1176,72,0 0/0:32,0:32:93.32:0,93,2063 0/0:54,0:54:99:0,160,3446 0/1:33,12:45:99:456,0,2006 0/1:23,21:44:99:907,0,1075 0/0:17,0:17:51.18:0,51,1140 0/1:34,32:66:99:1337,0,1972 0/0:49,0:47:99:0,135,3016 0/1:43,17:60:99:662,0,2436 0/0:61,0:59:99:0,166,3678 0/0:28,0:28:81.28:0,81,1808 0/0:51,0:51:99:0,141,3143 0/0:27,0:27:78.27:0,78,1731 0/0:40,0:40:99:0,117,2611 0/1:15,14:29:99:586,0,756 0/1:26,12:37:99:480,0,1490 0/0:19,0:19:57.20:0,57,1267 0/0:27,0:27:78.27:0,78,1743 0/0:48,0:48:99:0,138,3072 0/1:25,12:37:99:531,0,1283 0/0:38,0:38:99:0,114,2549 0/0:37,0:37:99:0,111,2481 0/0:30,0:30:81.28:0,81,1805 0/0:38,0:38:99:0,105,2344 0/1:15,4:19:99:151,0,684 0/0:28,0:28:84.28:0,84,1828 11 17417164 . T G 10.52 . AC=5;AF=0.064;AN=78;BaseQRankSum=-7.243;DP=184;Dels=0.00;FS=34.117;HRun=2;HaplotypeScore=0.0973;InbreedingCoeff=-0.0144;MQ=59.18;MQ0=0;MQRankSum=-0.221;QD=0.40;ReadPosRankSum=-2.337 GT:AD:DP:GQ:PL ./. 0/0:3,1:4:9.03:0,9,109 ./. 0/0:5,2:7:12.02:0,12,133 0/0:3,4:7:9.03:0,9,105 0/1:3,1:5:11.66:12,0,97 0/0:1,1:2:3.01:0,3,39 0/0:1,0:1:3.01:0,3,32 0/0:6,0:6:12.03:0,12,139 0/0:1,0:1:3.01:0,3,37 0/0:4,2:6:12.04:0,12,146 0/0:5,0:5:12.04:0,12,156 0/0:5,1:6:15.04:0,15,172 0/0:4,0:4:9.03:0,9,120 0/0:7,3:10:21.06:0,21,244 0/0:4,5:9:12.04:0,12,143 0/0:1,2:3:3.01:0,3,37 0/0:2,4:6:6.02:0,6,67 0/0:6,2:8:15.05:0,15,180 0/0:3,2:5:6.01:0,6,63 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:6.02:0,6,69 0/1:0,4:4:1.76:32,3,0 0/0:1,1:2:2.60:0,3,10 0/1:2,3:5:27.10:27,0,68 0/0:2,1:3:6.02:0,6,75 0/0:1,2:3:3.01:0,3,39 0/0:2,1:3:6.02:0,6,73 0/0:1,1:2:3.01:0,3,32 0/0:2,1:3:6.02:0,6,71 0/0:3,0:3:9.02:0,9,104 0/1:5,2:7:9.62:10,0,158 0/0:3,2:5:6.01:0,6,67 0/0:4,1:5:12.03:0,12,135 0/0:5,4:9:15.04:0,15,175 ./. 0/0:7,1:8:17.06:0,17,178 0/0:1,0:1:3.01:0,3,36 0/0:4,1:5:12.02:0,12,129 0/0:3,0:3:9.03:0,9,106 0/1:3,2:5:16.61:17,0,99 0/0:5,1:6:12.03:0,12,134 11 17418477 . C A 29677.36 . AC=57;AF=0.679;AN=84;BaseQRankSum=-1.718;DP=1572;Dels=0.00;FS=4.826;HRun=0;HaplotypeScore=1.0907;InbreedingCoeff=-0.2554;MQ=59.06;MQ0=0;MQRankSum=-0.062;QD=19.55;ReadPosRankSum=1.209 GT:AD:DP:GQ:PL 0/1:17,18:35:99:517,0,416 1/1:0,32:32:78.24:978,78,0 1/1:1,31:32:84.26:1038,84,0 0/1:32,31:63:99:842,0,984 0/1:31,33:64:99:924,0,956 1/1:0,40:41:99:1286,102,0 0/1:21,10:31:99:228,0,622 1/1:1,30:31:69.21:875,69,0 1/1:1,33:34:64.61:1067,65,0 1/1:0,29:29:72.21:891,72,0 0/1:16,13:29:99:306,0,445 0/1:17,11:28:99:291,0,459 0/1:18,10:28:99:223,0,503 0/1:21,15:36:99:392,0,603 0/1:45,56:101:99:1402,0,1264 0/1:18,12:30:99:322,0,538 1/1:0,22:22:54.13:637,54,0 0/1:29,7:36:99:145,0,858 0/1:23,26:49:99:698,0,643 1/1:0,41:41:99:1381,114,0 1/1:1,47:48:99:1443,114,0 1/1:0,43:43:99:1302,105,0 0/1:39,19:59:99:491,0,1105 0/1:24,17:41:99:434,0,672 0/1:23,27:51:99:784,0,652 1/1:2,39:41:30.97:1093,31,0 0/1:10,8:18:99:236,0,280 0/0:21,0:21:54.15:0,54,624 0/1:13,10:23:99:269,0,345 1/1:0,24:25:69.20:830,69,0 1/1:1,36:37:99:1259,102,0 0/1:24,24:48:99:605,0,596 1/1:0,29:29:81.22:956,81,0 0/1:21,18:39:99:498,0,567 1/1:0,28:28:72.22:899,72,0 0/1:10,18:28:99:485,0,266 1/1:0,49:49:99:1567,129,0 0/1:17,16:33:99:370,0,377 1/1:0,26:27:69.19:831,69,0 0/0:33,0:33:90.26:0,90,1091 0/1:15,13:28:99:364,0,378 0/1:14,17:31:99:516,0,355 11 17424246 . G A 2298.37 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.485;DP=4878;DS;Dels=0.00;FS=3.503;HRun=0;HaplotypeScore=2.6210;InbreedingCoeff=-0.0244;MQ=59.38;MQ0=0;MQRankSum=2.048;QD=12.23;ReadPosRankSum=-1.180 GT:AD:DP:GQ:PL 0/0:101,0:101:99:0,268,3132 0/0:86,0:86:99:0,235,2732 0/0:98,0:98:99:0,265,3153 0/0:232,1:233:99:0,552,7355 0/0:224,0:224:99:0,548,7099 0/0:151,0:151:99:0,385,4884 0/0:129,0:129:99:0,325,4115 0/0:136,0:137:99:0,346,4393 0/0:72,0:72:99:0,193,2323 0/0:90,0:90:99:0,232,2819 0/0:101,0:101:99:0,286,3322 0/0:93,0:93:99:0,256,3024 0/0:83,0:83:99:0,220,2571 0/0:109,0:109:99:0,286,3428 0/0:248,0:250:99:0,611,7325 0/0:94,0:94:99:0,256,2973 0/0:106,0:106:99:0,277,3314 0/0:96,0:96:99:0,256,3061 0/0:147,1:148:99:0,356,4562 0/0:128,0:128:99:0,322,3894 0/0:123,0:124:99:0,301,3589 0/0:87,0:88:99:0,220,2621 0/0:237,0:237:99:0,569,7432 0/0:128,0:128:99:0,322,4151 0/0:158,0:158:99:0,403,5276 0/0:99,0:99:99:0,235,3055 0/0:80,0:80:99:0,223,2658 0/0:107,0:107:99:0,268,3143 0/0:79,0:79:99:0,211,2481 0/0:86,0:86:99:0,223,2660 0/0:81,0:81:99:0,214,2537 0/0:132,0:132:99:0,331,4046 0/0:97,0:97:99:0,250,2957 0/0:78,0:78:99:0,223,2644 0/0:116,0:116:99:0,298,3574 0/0:104,0:104:99:0,265,3196 0/1:54,46:100:99:1123,0,1338 0/1:44,44:88:99:1238,0,1246 0/0:103,0:103:99:0,277,3293 0/0:95,0:95:99:0,253,3005 0/0:95,0:95:99:0,241,2885 0/0:74,0:74:99:0,214,2523 11 17449929 . C T 3737.90 . AC=4;AF=0.048;AN=84;BaseQRankSum=-11.841;DP=2291;Dels=0.00;FS=1.165;HRun=2;HaplotypeScore=1.6179;InbreedingCoeff=-0.0500;MQ=59.22;MQ0=0;MQRankSum=-0.124;QD=12.89;ReadPosRankSum=1.656 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,117,1487 0/0:25,0:25:72.23:0,72,908 0/0:33,0:33:90.27:0,90,1134 0/0:141,0:141:99:0,388,5188 0/0:119,0:119:99:0,328,4487 0/0:81,1:82:99:0,214,2862 0/0:62,1:63:99:0,141,2324 0/0:88,0:88:99:0,238,3171 0/0:34,0:34:99:0,99,1268 0/0:26,0:26:72.23:0,72,918 0/0:35,0:35:99:0,99,1243 0/0:29,0:29:84.24:0,84,1024 0/0:32,0:32:90.29:0,90,1156 0/0:33,0:33:90.27:0,90,1144 0/1:73,58:133:99:1534,0,2181 0/0:41,0:42:99:0,117,1458 0/1:23,22:45:99:653,0,680 0/0:39,0:39:99:0,117,1488 0/0:68,0:69:99:0,181,2291 0/0:88,0:90:99:0,235,2991 0/0:70,0:71:99:0,202,2531 0/0:32,1:33:58.72:0,59,1063 0/0:143,0:143:99:0,382,5123 0/0:70,0:70:99:0,199,2657 0/0:87,0:88:99:0,241,3264 0/0:67,0:67:99:0,190,2521 0/0:31,0:31:90.29:0,90,1147 0/0:31,0:31:90.29:0,90,1149 0/0:33,0:33:90.26:0,90,1105 0/0:29,0:29:81.26:0,81,1036 0/0:34,0:34:93.28:0,93,1157 0/0:65,0:65:99:0,187,2332 0/0:50,0:50:99:0,135,1702 0/0:31,0:31:93.29:0,93,1169 0/0:36,2:38:35.72:0,36,1212 0/0:31,0:31:90.28:0,90,1142 0/1:40,34:75:99:951,0,1190 0/0:35,0:35:90.28:0,90,1140 0/1:17,20:37:99:600,0,536 0/0:40,0:40:99:0,114,1412 0/0:30,0:30:84.25:0,84,1056 0/0:29,0:29:87.28:0,87,1103 11 17491730 . G A 778.76 . 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A G 31238.66 . 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C G 93068.51 . 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T C 16587.01 . 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T C 5957.10 . 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C A 145.80 . AC=6;AF=0.071;AN=84;BaseQRankSum=-20.460;DP=3335;Dels=0.00;FS=1230.526;HRun=2;HaplotypeScore=1.5677;InbreedingCoeff=-0.0874;MQ=59.16;MQ0=1;MQRankSum=0.105;QD=0.31;ReadPosRankSum=-16.362 GT:AD:DP:GQ:PL 0/0:41,24:65:2.49:1,0,1123 0/0:38,12:50:26.44:0,26,968 0/0:48,21:69:58.86:0,59,1297 0/1:97,51:148:21.55:22,0,2850 0/0:87,42:129:85.90:0,86,2665 0/0:65,24:89:60.81:0,61,1780 0/0:73,29:102:88.55:0,89,2308 0/0:62,33:95:79.68:0,80,1916 0/0:37,22:60:7.73:0,8,984 0/0:42,15:57:64.95:0,65,1254 0/1:38,19:57:82.04:82,0,1001 0/0:59,22:81:96.93:0,97,1920 0/0:52,17:69:72.35:0,72,1571 0/0:43,15:58:24.18:0,24,1111 0/0:160,64:224:99:0,128,4436 0/0:47,8:55:74.05:0,74,1349 0/1:54,25:79:25.36:25,0,1414 0/0:44,16:60:77.11:0,77,1185 0/0:64,14:78:76.87:0,77,1739 0/0:79,19:98:99:0,178,2350 0/0:56,19:75:21.38:0,21,1388 0/0:54,8:62:99:0,123,1503 0/0:115,46:161:50.67:0,51,3394 0/0:81,18:99:86.35:0,86,2318 0/0:84,25:109:99:0,126,2269 0/0:64,20:84:99:0,118,1833 0/0:45,15:60:72.02:0,72,1345 0/0:40,16:56:78.90:0,79,1138 0/0:33,8:41:36.27:0,36,940 0/0:39,15:54:10.74:0,11,1146 0/1:27,13:40:12.80:13,0,638 0/0:90,17:107:99:0,195,2237 0/0:45,15:60:49.97:0,50,1304 0/0:51,19:70:52.35:0,52,1390 0/0:50,15:65:95.89:0,96,1338 0/1:52,21:73:89.16:89,0,1228 0/0:60,19:79:45.89:0,46,1762 0/0:51,15:67:40.66:0,41,1320 0/1:46,22:68:17.24:17,0,1155 0/0:44,18:62:15.29:0,15,1127 0/0:57,13:70:88.45:0,88,1601 0/0:35,15:50:24.78:0,25,1052 11 18253176 . C T 88840.73 . AC=80;AF=0.952;AN=84;BaseQRankSum=-15.901;DP=2863;Dels=0.00;FS=1.469;HRun=0;HaplotypeScore=0.8757;InbreedingCoeff=-0.0500;MQ=59.18;MQ0=0;MQRankSum=-0.492;QD=31.03;ReadPosRankSum=0.923 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1598,132,0 1/1:0,59:59:99:2008,171,0 1/1:0,59:59:99:1976,168,0 1/1:0,96:96:99:3141,265,0 1/1:0,80:80:99:2688,226,0 1/1:0,72:72:99:2431,199,0 1/1:0,70:70:99:2350,193,0 1/1:0,63:63:99:2093,178,0 1/1:0,52:52:99:1671,141,0 1/1:0,46:46:99:1470,126,0 1/1:0,59:59:99:1965,165,0 1/1:0,45:45:99:1470,126,0 1/1:0,38:38:99:1216,102,0 0/1:42,24:66:99:564,0,1231 1/1:0,184:185:99:5769,481,0 1/1:0,60:60:99:2001,174,0 1/1:0,50:50:99:1656,141,0 1/1:0,55:56:99:1824,156,0 1/1:0,80:80:99:2695,229,0 1/1:0,115:116:99:3813,322,0 1/1:0,103:103:99:3359,280,0 1/1:0,73:73:99:2413,205,0 1/1:0,90:90:99:3002,250,0 1/1:0,79:79:99:2586,214,0 1/1:0,80:80:99:2626,220,0 1/1:0,77:77:99:2435,199,0 1/1:0,42:42:99:1370,114,0 1/1:0,69:69:99:2202,190,0 1/1:0,52:52:99:1686,144,0 1/1:0,53:53:99:1788,153,0 1/1:0,49:49:99:1582,132,0 1/1:0,95:95:99:3224,274,0 0/1:26,29:55:99:768,0,771 1/1:0,54:54:99:1856,156,0 1/1:0,59:59:99:1904,159,0 1/1:0,69:69:99:2255,190,0 1/1:0,76:76:99:2457,205,0 1/1:0,55:55:99:1801,153,0 1/1:0,60:60:99:1993,168,0 0/1:34,21:55:99:581,0,1018 1/1:0,51:51:99:1731,147,0 0/1:32,30:63:99:824,0,1011 11 18266961 . T C 915.10 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.733;DP=2649;Dels=0.00;FS=5.475;HRun=0;HaplotypeScore=3.0767;InbreedingCoeff=-0.0120;MQ=56.79;MQ0=10;MQRankSum=2.444;QD=16.05;ReadPosRankSum=-0.646 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,150,1737 0/0:59,0:59:99:0,162,1923 0/0:51,0:51:99:0,147,1713 0/0:89,0:89:99:0,253,3054 0/0:86,0:86:99:0,253,3054 0/0:85,0:85:99:0,226,2868 0/0:53,0:53:99:0,147,1789 0/0:65,0:65:99:0,190,2261 0/0:43,0:43:99:0,123,1464 0/0:58,0:58:99:0,165,1948 0/0:46,0:46:99:0,129,1558 0/0:46,0:46:99:0,132,1543 0/0:46,0:46:99:0,123,1476 0/0:52,0:52:99:0,147,1751 0/0:202,0:203:99:0,557,6613 0/0:47,0:47:99:0,129,1533 0/1:24,32:57:99:961,0,685 0/0:62,0:62:99:0,169,2023 0/0:71,0:71:99:0,199,2387 0/0:82,0:82:99:0,226,2710 0/0:57,0:57:99:0,153,1846 0/0:65,0:65:99:0,181,2140 0/0:86,0:86:99:0,241,2929 0/0:63,0:63:99:0,162,2017 0/0:80,0:80:99:0,202,2533 0/0:48,0:48:99:0,129,1618 0/0:48,0:48:99:0,117,1428 0/0:50,0:50:99:0,135,1586 0/0:50,0:50:99:0,126,1509 0/0:53,0:53:99:0,150,1790 0/0:52,0:52:99:0,147,1757 0/0:83,0:83:99:0,232,2794 0/0:52,0:52:99:0,147,1767 0/0:55,0:55:99:0,153,1834 0/0:61,0:61:99:0,165,1962 0/0:58,0:58:99:0,165,1953 0/0:70,0:70:99:0,190,2225 0/0:44,0:44:99:0,126,1477 0/0:52,0:52:99:0,150,1756 0/0:51,0:51:99:0,147,1734 0/0:60,0:60:99:0,156,1871 0/0:58,0:58:99:0,153,1866 11 18267020 . C T 1472.11 . 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C T 61245.30 . 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A G 24685.08 . 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T TGGAAA 580.38 . 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C T 1131.96 . 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T C 26874.06 . 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A G 1112.27 . 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T G 982.27 . 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G T 62793.92 . AC=57;AF=0.679;AN=84;BaseQRankSum=-38.301;DP=3205;Dels=0.00;FS=3.433;HRun=1;HaplotypeScore=1.3298;InbreedingCoeff=-0.1462;MQ=59.33;MQ0=0;MQRankSum=0.876;QD=21.09;ReadPosRankSum=-1.342 GT:AD:DP:GQ:PL 0/1:32,31:63:99:876,0,942 1/1:2,45:47:65.42:1447,65,0 0/1:24,29:53:99:826,0,742 0/1:61,64:125:99:1835,0,1998 0/1:49,57:106:99:1632,0,1602 0/0:98,1:99:99:0,223,3534 0/1:43,42:85:99:1225,0,1315 0/1:58,29:87:99:805,0,1896 1/1:1,61:62:99:1958,136,0 1/1:0,52:52:99:1675,135,0 1/1:0,51:51:99:1813,150,0 0/0:59,1:60:99:0,122,1987 0/1:28,23:51:99:647,0,860 0/1:25,36:61:99:920,0,779 0/1:141,103:244:99:2532,0,3951 0/1:19,16:35:99:430,0,588 0/1:43,38:81:99:1071,0,1288 0/1:42,16:58:99:417,0,1234 1/1:0,125:125:99:3956,310,0 1/1:0,111:111:99:3595,289,0 0/1:51,61:112:99:1630,0,1489 0/0:69,0:69:99:0,181,2347 0/1:72,59:131:99:1661,0,2265 0/1:49,34:83:99:926,0,1582 0/1:54,45:99:99:1264,0,1737 1/1:1,72:73:99:2436,163,0 1/1:0,42:42:99:1420,117,0 1/1:0,68:68:99:2393,199,0 1/1:0,55:55:99:1749,147,0 0/1:29,28:57:99:811,0,881 1/1:0,55:55:99:1864,153,0 1/1:0,106:106:99:3557,292,0 0/1:32,23:55:99:586,0,1014 1/1:0,56:56:99:1969,162,0 0/1:39,23:62:99:645,0,1163 1/1:0,67:68:99:2134,177,0 1/1:0,93:93:99:2977,238,0 1/1:0,69:69:99:2250,184,0 0/1:29,35:64:99:1049,0,878 1/1:1,50:51:99:1739,114,0 0/1:18,16:34:99:471,0,556 1/1:0,47:47:99:1604,132,0 11 18379577 . C A 107.15 . AC=11;AF=0.131;AN=84;BaseQRankSum=-12.006;DP=1321;Dels=0.00;FS=353.230;HRun=2;HaplotypeScore=0.4155;InbreedingCoeff=-0.1835;MQ=59.03;MQ0=0;MQRankSum=-0.644;QD=0.31;ReadPosRankSum=-8.939 GT:AD:DP:GQ:PL 0/1:19,15:34:19.85:20,0,497 0/1:20,10:30:10.05:10,0,469 0/0:13,4:17:12.41:0,12,386 0/1:34,35:69:21.17:21,0,996 0/0:28,30:58:6.90:0,7,697 0/0:26,14:41:60.16:0,60,769 0/0:12,12:24:18.06:0,18,246 0/0:26,26:52:50.54:0,51,899 0/0:26,10:36:29.47:0,29,608 0/0:17,10:27:45.14:0,45,545 0/0:20,5:26:28.48:0,28,621 0/0:15,10:25:36.11:0,36,443 0/0:12,9:21:2.34:1,0,288 0/0:11,14:25:2.77:0,0,311 0/0:60,38:98:75.55:0,76,1894 0/1:10,10:20:7.48:7,0,235 0/1:21,10:31:6.06:6,0,534 0/0:12,4:16:2.60:1,0,368 0/0:30,12:42:81.24:0,81,986 0/0:25,10:35:48.11:0,48,562 0/1:18,11:29:59.56:60,0,457 0/0:19,10:30:42.13:0,42,521 0/1:31,28:59:36.88:37,0,986 0/1:11,12:23:13.30:13,0,343 0/0:20,14:34:19.61:0,20,598 0/0:18,21:39:28.21:0,28,591 0/1:13,7:21:30.61:31,0,342 0/0:19,7:26:38.13:0,38,436 0/0:9,4:13:24.08:0,24,304 0/0:19,11:30:51.16:0,51,632 0/0:14,8:22:15.45:0,15,467 0/0:21,9:30:23.06:0,23,519 0/0:13,7:20:32.99:0,33,388 0/0:18,3:21:42.12:0,42,516 0/1:9,4:13:10.72:11,0,257 0/0:17,7:24:45.14:0,45,574 0/0:29,10:39:9.83:0,10,877 0/1:15,7:22:16.14:16,0,361 0/0:19,14:33:25.94:0,26,533 0/0:18,8:26:38.78:0,39,448 0/0:11,4:15:21.07:0,21,268 0/0:13,12:25:2.43:1,0,337 11 18422487 . C A 9498.95 . AC=12;AF=0.143;AN=84;BaseQRankSum=-24.001;DP=2737;Dels=0.00;FS=4.958;HRun=0;HaplotypeScore=0.7501;InbreedingCoeff=0.0278;MQ=55.92;MQ0=16;MQRankSum=3.427;QD=14.52;ReadPosRankSum=-1.454 GT:AD:DP:GQ:PL 0/1:20,23:43:99:642,0,619 0/1:24,21:45:99:557,0,723 0/1:13,17:30:99:489,0,331 0/0:120,0:120:99:0,346,4541 0/0:95,0:95:99:0,277,3722 0/0:112,0:112:99:0,304,4084 0/1:59,39:98:99:1071,0,1736 0/0:84,0:84:99:0,226,3052 0/0:60,0:60:99:0,166,2089 0/0:42,0:42:99:0,120,1526 0/0:39,0:39:99:0,99,1286 0/1:21,16:37:99:455,0,617 0/0:56,0:56:99:0,159,2009 1/1:0,50:50:99:1634,135,0 0/0:165,0:165:99:0,448,5790 0/0:49,0:49:99:0,126,1632 0/0:58,0:58:99:0,166,2084 0/0:54,0:54:99:0,150,1917 0/0:70,0:70:99:0,187,2378 0/0:74,0:74:99:0,202,2590 0/0:88,0:88:99:0,217,2757 0/0:43,0:43:99:0,114,1463 0/0:137,0:137:99:0,388,5227 0/1:43,40:83:99:1169,0,1356 0/1:43,63:106:99:1837,0,1296 0/0:100,0:100:99:0,289,3812 0/0:24,1:25:72.21:0,72,880 0/0:51,0:51:99:0,141,1769 0/0:46,0:46:99:0,126,1607 0/0:56,2:58:96.57:0,97,1919 0/0:28,0:28:84.27:0,84,1078 0/0:100,0:100:99:0,265,3417 0/0:33,0:33:93.30:0,93,1190 0/0:54,0:54:99:0,147,1851 0/1:38,24:62:99:641,0,1045 0/0:49,0:49:99:0,123,1593 0/0:56,1:57:99:0,150,1910 0/0:48,0:48:99:0,129,1645 0/1:34,24:58:99:597,0,1044 0/0:52,0:52:99:0,144,1837 0/1:27,15:42:99:406,0,807 0/0:36,0:36:99:0,105,1335 11 18422526 . G A 1889.20 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.237;DP=3059;Dels=0.00;FS=6.571;HRun=2;HaplotypeScore=0.7943;InbreedingCoeff=-0.0244;MQ=55.92;MQ0=14;MQRankSum=5.006;QD=13.40;ReadPosRankSum=0.106 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,129,1573 0/0:53,0:53:99:0,135,1659 0/0:30,0:30:81.23:0,81,1003 0/0:148,0:148:99:0,364,4811 0/0:115,0:115:99:0,274,3684 0/0:118,1:119:99:0,265,3959 0/0:116,0:116:99:0,280,3729 0/1:38,54:92:99:1495,0,993 0/0:62,0:62:99:0,159,2007 0/1:31,18:49:99:456,0,910 0/0:49,0:49:99:0,132,1608 0/0:42,0:42:99:0,114,1409 0/0:52,0:52:99:0,144,1719 0/0:69,0:69:99:0,162,2013 0/0:177,0:178:99:0,436,5445 0/0:37,0:37:96.29:0,96,1204 0/0:61,0:61:99:0,159,1960 0/0:50,0:50:99:0,138,1670 0/0:73,0:73:99:0,184,2273 0/0:80,0:80:99:0,193,2476 0/0:83,0:83:99:0,196,2444 0/0:49,0:49:99:0,120,1505 0/0:176,0:176:99:0,406,5502 0/0:102,0:102:99:0,247,3315 0/0:119,2:121:99:0,244,3836 0/0:132,0:132:99:0,292,3885 0/0:34,0:34:93.24:0,93,1110 0/0:60,0:60:99:0,162,1978 0/0:59,0:59:99:0,156,1896 0/0:54,0:54:99:0,144,1796 0/0:32,0:32:90.27:0,90,1112 0/0:95,0:95:99:0,241,3025 0/0:41,0:41:99:0,108,1322 0/0:58,0:58:99:0,156,1899 0/0:62,0:62:99:0,144,1806 0/0:70,0:70:99:0,172,2130 0/0:70,0:70:99:0,168,2083 0/0:51,0:51:99:0,120,1507 0/0:49,0:49:99:0,132,1625 0/0:53,0:53:99:0,138,1709 0/0:42,0:42:99:0,114,1366 0/0:42,0:42:99:0,114,1418 11 18451402 . T C 6.97 . AC=1;AF=0.012;AN=84;BaseQRankSum=-22.151;DP=4064;Dels=0.00;FS=1777.269;HRun=2;HaplotypeScore=1.8397;InbreedingCoeff=-0.0325;MQ=59.29;MQ0=0;MQRankSum=0.107;QD=0.13;ReadPosRankSum=-18.485 GT:AD:DP:GQ:PL 0/0:46,25:71:99:0,100,1545 0/0:60,23:84:99:0,114,1982 0/0:46,20:66:88.09:0,88,1572 0/0:115,52:167:99:0,157,3889 0/0:141,50:191:99:0,321,4968 0/0:97,37:135:99:0,217,3419 0/0:85,38:123:99:0,190,2914 0/0:114,61:175:99:0,197,3849 0/0:43,26:70:92.03:0,92,1438 0/0:42,14:56:48.58:0,49,1410 0/0:39,17:56:68.08:0,68,1354 0/0:50,20:70:98.56:0,99,1576 0/0:47,19:66:42.12:0,42,1475 0/0:59,32:91:32.67:0,33,1710 0/0:155,85:241:99:0,250,5067 0/1:33,20:53:50.35:50,0,983 0/0:51,21:73:58.93:0,59,1649 0/0:43,20:63:37.84:0,38,1342 0/0:85,46:131:0.21:13,0,2761 0/0:86,42:128:99:0,151,2734 0/0:74,28:102:1.30:0,1,2184 0/0:54,27:81:89.05:0,89,1768 0/0:137,70:208:99:0,219,4564 0/0:95,43:138:99:0,161,3130 0/0:110,33:143:99:0,201,3701 0/0:66,35:102:99:0,112,2233 0/0:41,22:63:99:0,113,1337 0/0:52,26:78:8.21:0,8,1618 0/0:36,24:60:20.68:0,21,1090 0/0:44,29:73:42.85:0,43,1256 0/0:45,24:69:79.29:0,79,1524 0/0:83,38:121:99:0,215,2825 0/0:58,21:79:99:0,128,1843 0/0:38,21:59:12.30:0,12,1144 0/0:53,19:72:99:0,99,1733 0/0:47,22:69:92.16:0,92,1627 0/0:57,36:93:12.04:0,12,1753 0/0:52,25:77:19.42:0,19,1632 0/0:43,17:60:99:0,126,1470 0/0:51,30:81:85.39:0,85,1730 0/0:33,25:58:38.11:0,38,1047 0/0:46,22:68:99:0,107,1591 11 18555901 . C G 7119.79 . AC=15;AF=0.179;AN=84;BaseQRankSum=4.424;DP=1573;Dels=0.00;FS=9.836;HRun=1;HaplotypeScore=0.6232;InbreedingCoeff=-0.0551;MQ=59.42;MQ0=0;MQRankSum=0.298;QD=15.61;ReadPosRankSum=-0.440 GT:AD:DP:GQ:PL 0/1:19,11:30:99:289,0,540 0/1:11,11:22:99:356,0,331 0/0:30,0:30:75.24:0,75,996 0/0:49,0:49:99:0,135,1818 0/0:52,0:52:99:0,150,2034 0/0:65,0:65:99:0,181,2455 0/0:44,1:45:88.62:0,89,1621 0/0:42,0:42:99:0,120,1608 0/1:22,11:33:99:298,0,698 0/1:11,8:19:99:207,0,304 0/0:25,0:25:69.22:0,69,879 0/0:34,0:34:99:0,99,1240 0/0:40,0:40:99:0,114,1457 0/0:38,0:38:99:0,99,1277 0/0:97,0:97:99:0,262,3361 0/0:28,0:28:75.23:0,75,943 0/0:30,0:30:87.28:0,87,1103 0/1:16,11:27:99:319,0,532 0/0:45,0:45:99:0,117,1487 0/0:28,0:28:78.24:0,78,990 0/0:44,0:44:99:0,120,1514 0/0:24,0:24:69.21:0,69,864 0/1:36,26:62:99:819,0,1178 0/1:25,18:43:99:587,0,743 1/1:0,43:43:99:1663,123,0 0/0:48,0:48:99:0,132,1750 0/0:19,0:19:42.13:0,42,543 0/0:35,0:35:99:0,102,1273 0/0:26,0:26:78.25:0,78,986 0/0:38,0:38:99:0,102,1293 0/0:38,0:38:99:0,111,1404 0/0:56,0:58:99:0,150,1945 0/0:27,0:27:78.25:0,78,989 0/1:21,14:35:99:413,0,668 0/0:43,0:43:99:0,120,1531 0/1:13,18:31:99:544,0,373 0/0:37,0:38:99:0,99,1248 0/0:31,0:31:93.27:0,93,1151 0/1:14,20:34:99:568,0,436 0/1:18,11:29:99:308,0,570 0/1:12,10:22:99:315,0,362 0/1:11,15:26:99:434,0,346 11 18555949 . T C 12180.60 . AC=15;AF=0.179;AN=84;BaseQRankSum=20.032;DP=2297;Dels=0.00;FS=24.793;HRun=0;HaplotypeScore=0.7544;InbreedingCoeff=-0.0551;MQ=59.44;MQ0=0;MQRankSum=1.918;QD=17.11;ReadPosRankSum=1.441 GT:AD:DP:GQ:PL 0/1:19,28:47:99:814,0,508 0/1:18,30:48:99:899,0,465 0/0:40,0:40:99:0,99,1226 0/0:77,0:77:99:0,199,2427 0/0:85,0:85:99:0,226,2762 0/0:114,0:114:99:0,295,3731 0/0:65,0:65:99:0,172,2158 0/0:83,0:83:99:0,223,2728 0/1:20,15:35:99:460,0,545 0/1:17,12:29:99:358,0,486 0/0:41,0:41:99:0,108,1280 0/0:51,0:51:99:0,147,1755 0/0:54,0:54:99:0,153,1816 0/0:41,0:41:99:0,114,1365 0/0:136,0:136:99:0,343,4101 0/0:25,0:25:72.22:0,72,854 0/0:45,0:45:99:0,111,1348 0/1:18,14:32:99:396,0,504 0/0:54,0:54:99:0,141,1733 0/0:52,0:52:99:0,132,1635 0/0:69,0:69:99:0,175,2140 0/0:31,0:31:84.25:0,84,1004 0/1:53,43:96:99:1314,0,1515 0/1:56,39:95:99:1166,0,1553 1/1:0,81:81:99:2817,208,0 0/0:78,0:78:99:0,196,2429 0/0:21,0:21:57.16:0,57,669 0/0:36,0:36:99:0,99,1176 0/0:43,0:43:99:0,114,1366 0/0:54,0:54:99:0,153,1812 0/0:43,0:43:99:0,123,1442 0/0:74,0:74:99:0,184,2267 0/0:34,0:34:90.26:0,90,1086 0/1:26,27:53:99:748,0,740 0/0:40,0:40:99:0,108,1310 0/1:17,18:35:99:535,0,475 0/0:56,0:56:99:0,132,1655 0/0:42,0:42:99:0,120,1413 0/1:16,23:39:99:645,0,454 0/1:19,19:38:99:565,0,536 0/1:19,19:38:99:537,0,548 0/1:16,30:46:99:925,0,381 11 18587921 . G A 3.62 . AC=1;AF=0.012;AN=84;BaseQRankSum=-9.427;DP=2678;Dels=0.00;FS=39.927;HRun=1;HaplotypeScore=2.7616;InbreedingCoeff=-0.0215;MQ=58.87;MQ0=0;MQRankSum=5.472;QD=0.07;ReadPosRankSum=-4.079 GT:AD:DP:GQ:PL 0/0:41,2:43:81.18:0,81,922 0/0:42,4:46:80.54:0,81,1148 0/0:33,1:34:63.14:0,63,724 0/0:124,2:126:99:0,247,2863 0/0:114,4:118:99:0,238,2797 0/0:116,3:119:99:0,262,2967 0/0:101,4:106:99:0,154,2701 0/0:93,2:95:99:0,210,2364 0/0:48,2:50:99:0,111,1233 0/0:37,0:37:90.21:0,90,1030 0/0:42,4:46:78.16:0,78,887 0/0:42,1:43:90.19:0,90,989 0/0:41,0:41:93.14:0,93,1000 0/0:39,4:43:75.12:0,75,812 0/0:142,17:159:99:0,174,3009 0/0:39,2:41:74.59:0,75,1075 0/0:36,4:41:90.16:0,90,979 0/0:44,1:45:93.21:0,93,1036 0/1:38,15:53:47.03:47,0,647 0/0:64,1:65:99:0,153,1745 0/0:41,8:49:1.16:5,0,868 0/0:49,2:51:99:0,111,1275 0/0:120,7:127:99:0,256,3034 0/0:88,3:91:99:0,183,2097 0/0:102,3:105:99:0,212,2723 0/0:103,3:107:99:0,214,2500 0/0:44,1:45:93.15:0,93,976 0/0:63,3:66:99:0,135,1571 0/0:37,2:39:81.19:0,81,930 0/0:53,2:56:76.90:0,77,1189 0/0:33,0:33:51.12:0,51,588 0/0:63,3:68:99:0,159,1800 0/0:51,2:53:99:0,102,1189 0/0:51,1:52:99:0,99,1079 0/0:44,1:45:90.25:0,90,1080 0/0:49,6:55:93.18:0,93,1030 0/0:43,7:50:45.97:0,46,897 0/0:32,1:34:69.14:0,69,749 0/0:48,1:49:93.20:0,93,1055 0/0:49,2:51:77.53:0,78,1090 0/0:40,3:43:69.47:0,69,978 0/0:49,8:58:99:0,126,1452 11 18587929 . A C 105.42 . AC=6;AF=0.071;AN=84;BaseQRankSum=-20.876;DP=3145;Dels=0.00;FS=395.616;HRun=2;HaplotypeScore=2.1256;InbreedingCoeff=-0.0862;MQ=59.04;MQ0=0;MQRankSum=-0.047;QD=0.24;ReadPosRankSum=-6.922 GT:AD:DP:GQ:PL 0/0:26,24:51:36.55:0,37,683 0/0:32,26:58:78.15:0,78,818 0/0:26,15:41:7.99:0,8,642 0/0:74,77:151:99:0,162,1966 0/0:80,55:136:99:0,121,2115 0/0:77,69:146:99:0,154,2066 0/0:72,47:119:99:0,113,1787 0/0:69,50:119:99:0,171,1764 0/0:42,17:59:99:0,102,1081 0/0:26,19:45:66.15:0,66,714 0/0:30,15:45:66.15:0,66,726 0/0:23,20:43:9.71:0,10,510 0/1:25,19:44:23.88:24,0,603 0/0:29,20:49:21.86:0,22,704 0/1:96,97:196:12.93:13,0,1917 0/0:32,18:50:81.18:0,81,883 0/1:26,23:49:25.24:25,0,579 0/0:30,20:50:41.83:0,42,844 0/1:28,26:54:60.96:61,0,620 0/0:51,25:76:99:0,106,1313 0/0:32,31:63:19.78:0,20,856 0/0:38,19:57:99:0,99,1051 0/0:88,79:168:26.35:0,26,1915 0/0:59,44:103:99:0,138,1430 0/0:65,53:118:99:0,133,1542 0/0:65,56:122:99:0,101,1676 0/1:21,32:55:25.58:26,0,482 0/0:36,33:69:20.85:0,21,913 0/0:28,22:50:65.02:0,65,705 0/0:41,28:69:69.83:0,70,1068 0/1:22,25:47:60.23:60,0,471 0/0:51,25:77:83.77:0,84,1364 0/0:37,23:60:90.11:0,90,916 0/0:31,27:58:4.92:0,5,781 0/0:36,25:61:32.09:0,32,875 0/0:35,33:68:35.11:0,35,907 0/0:26,25:51:17.09:0,17,744 0/0:26,22:48:63.11:0,63,663 0/0:35,21:56:38.20:0,38,690 0/0:32,29:61:50.50:0,50,773 0/0:32,18:50:18.92:0,19,750 0/0:33,20:53:6.46:0,6,780 11 18600322 . T G 9323.41 . AC=12;AF=0.143;AN=84;BaseQRankSum=-10.603;DP=2708;Dels=0.00;FS=6.234;HRun=0;HaplotypeScore=0.6762;InbreedingCoeff=0.0278;MQ=59.15;MQ0=0;MQRankSum=-0.553;QD=14.48;ReadPosRankSum=-0.988 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,159,2058 0/0:70,0:70:99:0,178,2276 0/0:47,0:47:99:0,126,1615 0/0:106,0:106:99:0,280,3656 0/0:99,0:99:99:0,274,3598 0/0:102,0:102:99:0,265,3523 0/0:93,0:93:99:0,244,3249 0/0:97,0:97:99:0,244,3222 0/1:26,28:54:99:729,0,701 0/1:23,20:43:99:478,0,681 0/0:36,0:36:93.29:0,93,1190 0/0:45,0:45:99:0,117,1509 0/0:53,0:53:99:0,147,1864 0/0:45,0:45:99:0,123,1571 0/0:165,0:165:99:0,403,5226 0/0:43,0:43:99:0,114,1467 0/0:46,0:46:99:0,129,1627 0/1:22,21:43:99:512,0,671 0/0:58,0:58:99:0,156,1974 0/0:65,0:65:99:0,169,2182 0/0:55,0:55:99:0,141,1793 0/0:46,0:46:99:0,126,1600 0/0:125,0:125:99:0,301,4014 0/1:49,42:91:99:1134,0,1406 1/1:4,93:97:99:3071,157,0 0/0:94,1:95:99:0,204,3179 0/0:37,0:37:99:0,99,1250 0/0:63,0:63:99:0,166,2103 0/0:47,0:47:99:0,135,1707 0/0:48,0:48:99:0,132,1679 0/0:56,1:57:99:0,144,1862 0/0:56,0:56:99:0,138,1788 0/0:42,0:42:99:0,111,1423 0/1:33,17:50:99:425,0,948 0/0:50,0:50:99:0,141,1794 0/1:32,18:50:99:491,0,923 0/0:56,0:56:99:0,144,1860 0/0:51,0:51:99:0,132,1698 0/1:27,33:61:99:884,0,763 0/1:41,21:62:99:520,0,1304 0/1:29,17:46:99:408,0,825 0/1:22,25:47:99:672,0,644 11 18739568 . G A 2702.85 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.627;DP=3480;DS;Dels=0.00;FS=4.543;HRun=1;HaplotypeScore=1.4504;InbreedingCoeff=-0.0244;MQ=59.36;MQ0=0;MQRankSum=0.440;QD=13.18;ReadPosRankSum=0.714 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,166,2110 0/0:66,0:66:99:0,181,2305 0/0:65,0:65:99:0,190,2349 0/0:142,1:143:99:0,400,5357 0/0:149,0:149:99:0,418,5698 0/0:124,0:124:99:0,337,4560 0/0:110,0:110:99:0,307,4156 0/0:98,0:98:99:0,265,3598 0/0:65,0:65:99:0,190,2411 0/0:53,0:53:99:0,147,1886 0/0:69,0:69:99:0,187,2396 0/0:62,0:62:99:0,169,2148 0/0:47,0:47:99:0,132,1684 0/0:63,0:63:99:0,178,2251 0/0:248,0:248:99:0,665,8511 0/0:56,0:56:99:0,156,1982 0/0:68,0:69:99:0,199,2524 0/0:42,0:42:99:0,120,1508 0/0:90,0:90:99:0,256,3230 0/0:105,0:105:99:0,274,3479 0/0:101,0:101:99:0,289,3671 0/0:50,0:50:99:0,141,1780 0/0:155,0:156:99:0,430,5798 0/1:57,36:93:99:982,0,1965 0/1:51,61:112:99:1783,0,1626 0/0:83,0:83:99:0,232,3144 0/0:52,0:52:99:0,150,1880 0/0:70,0:70:99:0,193,2432 0/0:69,0:69:99:0,196,2481 0/0:72,0:72:99:0,208,2626 0/0:57,0:57:99:0,172,2168 0/0:70,0:70:99:0,187,2428 0/0:72,0:72:99:0,193,2431 0/0:70,0:70:99:0,196,2501 0/0:74,0:74:99:0,208,2608 0/0:71,0:71:99:0,205,2608 0/0:102,0:102:99:0,280,3538 0/0:48,0:48:99:0,135,1692 0/0:75,0:75:99:0,217,2723 0/0:66,0:66:99:0,196,2473 0/0:57,0:57:99:0,156,2007 0/0:76,0:76:99:0,211,2677 11 18740268 . C T 3795.33 . AC=3;AF=0.036;AN=84;BaseQRankSum=9.748;DP=5461;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8519;InbreedingCoeff=-0.0370;MQ=59.63;MQ0=0;MQRankSum=1.569;QD=12.01;ReadPosRankSum=1.359 GT:AD:DP:GQ:PL 0/0:123,0:123:99:0,334,3796 0/1:66,41:107:99:1052,0,1769 0/1:66,51:117:99:1449,0,1706 0/0:229,0:229:99:0,638,7711 0/0:177,0:177:99:0,511,6145 0/0:197,0:197:99:0,545,6705 0/0:157,0:157:99:0,445,5369 0/0:185,0:185:99:0,490,6039 0/0:115,0:115:99:0,328,3611 0/0:102,0:102:99:0,277,3093 0/1:49,43:92:99:1294,0,1324 0/0:96,1:97:99:0,242,2921 0/0:92,0:92:99:0,247,2796 0/0:89,0:89:99:0,247,2803 0/0:235,1:236:99:0,625,7329 0/0:88,0:88:99:0,244,2703 0/0:104,0:104:99:0,298,3313 0/0:117,0:117:99:0,328,3702 0/0:180,0:181:99:0,490,5559 0/0:183,1:184:99:0,461,5600 0/0:164,0:165:99:0,430,4953 0/0:93,0:93:99:0,259,2934 0/0:196,0:196:99:0,545,6581 0/0:169,0:169:99:0,460,5649 0/0:168,0:168:99:0,481,5852 0/0:177,1:178:99:0,433,5697 0/0:84,1:85:99:0,203,2591 0/0:101,0:101:99:0,292,3231 0/0:109,0:109:99:0,304,3440 0/0:86,0:86:99:0,241,2683 0/0:90,0:90:99:0,259,2910 0/0:173,0:173:99:0,463,5386 0/0:120,0:120:99:0,328,3653 0/0:93,2:95:99:0,259,2925 0/0:96,0:96:99:0,271,3021 0/0:99,0:99:99:0,277,3103 0/0:148,0:148:99:0,403,4590 0/0:121,0:122:99:0,334,3695 0/0:81,0:81:99:0,229,2563 0/0:94,0:94:99:0,274,3050 0/0:90,0:90:99:0,253,2857 0/0:114,0:114:99:0,319,3591 11 18754831 . T C 963.52 . AC=20;AF=0.238;AN=84;BaseQRankSum=-31.943;DP=4106;DS;Dels=0.00;FS=2315.683;HRun=2;HaplotypeScore=2.4989;InbreedingCoeff=-0.3349;MQ=58.91;MQ0=0;MQRankSum=-0.686;QD=0.49;ReadPosRankSum=-24.464 GT:AD:DP:GQ:PL 0/0:53,23:76:7.68:0,8,1604 0/1:50,42:92:38.88:39,0,1433 0/1:41,26:67:99:116,0,1168 0/0:123,68:191:34.18:0,34,4017 0/0:100,73:173:19.75:0,20,3167 0/0:90,39:129:99:0,156,3047 0/0:56,41:97:19.74:0,20,1852 0/0:63,27:90:51.44:0,51,1672 0/1:53,28:81:15.31:15,0,1473 0/0:53,22:75:17.24:0,17,1597 0/1:47,27:74:86.42:86,0,1389 0/0:48,26:74:16.87:0,17,1372 0/1:43,17:60:1.58:2,0,1271 0/0:62,34:96:31.31:0,31,1783 0/1:154,96:250:99:233,0,4505 0/1:50,29:79:63.39:63,0,1265 0/0:74,25:99:99:0,142,2303 0/1:45,26:71:47.32:47,0,1406 0/1:80,38:118:38.70:39,0,2419 0/0:85,35:120:99:0,130,2432 0/1:82,35:117:13.43:13,0,2333 0/0:57,25:82:44.62:0,45,1613 0/1:114,81:195:18.25:18,0,3614 0/0:46,32:79:66.88:0,67,1413 0/0:79,45:124:57.34:0,57,2600 0/0:55,38:93:99:0,110,1796 0/0:44,15:59:34.75:0,35,1315 0/1:46,24:70:37.54:38,0,1358 0/0:46,20:66:2.63:0,3,1247 0/1:61,35:96:58.90:59,0,1663 0/1:40,31:73:65.49:65,0,1093 0/0:81,32:113:17.20:0,17,2100 0/1:62,33:96:14.57:15,0,1694 0/1:50,21:71:16.34:16,0,1524 0/0:55,23:78:2.89:0,0,1696 0/0:54,27:81:67.94:0,68,1568 0/1:61,38:99:38.84:39,0,1691 0/1:52,33:86:99:151,0,1475 0/1:55,27:82:40.96:41,0,1548 0/1:42,30:72:29.31:29,0,1177 0/0:49,21:70:2.70:1,0,1357 0/0:63,28:92:63.18:0,63,1962 11 18763941 . T C 103.57 . 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G C 14714.49 . 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G A 71171.69 . 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C T 584.04 . 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A G 40606.84 . 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C T 47535.15 . 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T G 23.99 . AC=4;AF=0.048;AN=84;BaseQRankSum=-31.374;DP=2829;Dels=0.00;FS=285.668;HRun=1;HaplotypeScore=1.1652;InbreedingCoeff=-0.0800;MQ=59.24;MQ0=0;MQRankSum=-0.338;QD=0.13;ReadPosRankSum=-12.919 GT:AD:DP:GQ:PL 0/0:32,16:49:84.23:0,84,995 0/1:26,21:47:25.55:26,0,685 0/0:23,17:40:8.86:0,9,607 0/0:83,92:175:21.06:0,21,2332 0/0:74,74:148:18.99:0,19,1999 0/0:77,48:126:99:0,122,1932 0/0:66,49:115:99:0,129,1986 0/0:80,53:133:99:0,156,2120 0/0:24,16:40:36.48:0,36,647 0/0:26,16:42:63.13:0,63,724 0/1:35,19:54:14.52:15,0,781 0/0:25,14:40:38.56:0,39,711 0/0:24,13:37:46.83:0,47,681 0/0:32,18:50:13.21:0,13,831 0/0:77,71:148:99:0,130,2327 0/0:16,14:31:45.12:0,45,519 0/0:38,20:58:62.28:0,62,1133 0/0:30,21:51:81.07:0,81,943 0/1:22,20:42:51.10:51,0,495 0/0:32,15:47:65.46:0,65,887 0/0:32,20:52:52.74:0,53,900 0/0:16,10:26:43.99:0,44,523 0/0:88,89:177:99:0,170,2737 0/0:76,46:123:99:0,156,2089 0/0:79,54:133:66.59:0,67,2137 0/0:82,50:133:99:0,150,2248 0/0:19,14:33:48.12:0,48,541 0/0:37,15:52:51.81:0,52,1045 0/0:20,12:32:20.73:0,21,592 0/0:27,14:41:77.41:0,77,877 0/0:33,23:56:0.30:0,0,812 0/1:29,10:39:10.69:11,0,665 0/0:17,14:31:51.15:0,51,610 0/0:27,18:45:48.62:0,49,847 0/0:30,20:50:22.19:0,22,811 0/0:39,20:59:52.32:0,52,1216 0/0:19,15:34:27.35:0,27,545 0/0:27,24:51:50.50:0,50,785 0/0:19,23:42:0.65:8,0,480 0/0:28,27:55:22.41:0,22,850 0/0:24,18:42:57.16:0,57,672 0/0:28,22:50:1:6,0,696 11 26677947 . C T 117564.71 . AC=60;AF=0.714;AN=84;BaseQRankSum=-18.841;DP=5385;DS;Dels=0.00;FS=17.857;HRun=1;HaplotypeScore=2.3983;InbreedingCoeff=0.1833;MQ=59.49;MQ0=0;MQRankSum=2.002;QD=25.84;ReadPosRankSum=-3.244 GT:AD:DP:GQ:PL 1/1:1,96:97:99:3177,250,0 1/1:0,102:102:99:3246,256,0 1/1:0,95:95:99:3299,262,0 1/1:2,204:206:99:6868,481,0 1/1:1,196:197:99:6754,487,0 0/1:92,118:210:99:3345,0,2654 0/0:201,0:201:99:0,533,7175 1/1:0,195:195:99:6875,536,0 1/1:1,93:94:99:3183,253,0 1/1:1,90:91:99:2996,238,0 1/1:1,86:87:99:2817,223,0 1/1:0,98:99:99:3162,247,0 0/1:51,42:93:99:1217,0,1493 0/1:55,43:98:99:1099,0,1641 1/1:1,248:250:99:8077,647,0 1/1:0,80:80:99:2895,232,0 1/1:0,112:112:99:3768,301,0 0/1:65,47:112:99:1228,0,1889 0/1:69,68:137:99:1771,0,1841 0/0:173,0:174:99:0,436,5641 1/1:0,136:136:99:4585,367,0 0/1:54,42:96:99:1120,0,1555 1/1:0,234:234:99:8017,620,0 0/0:180,0:180:99:0,482,6472 0/1:93,101:194:99:2793,0,2726 0/1:94,91:185:99:2486,0,2628 0/1:41,32:73:99:766,0,1186 0/1:64,45:109:99:1218,0,1690 1/1:1,92:93:99:3181,253,0 1/1:1,81:82:99:2613,175,0 1/1:0,77:77:99:2710,217,0 1/1:0,123:123:99:4079,319,0 1/1:0,93:93:99:3089,244,0 0/0:107,1:108:99:0,263,3736 0/1:49,34:83:99:919,0,1463 0/1:66,65:131:99:1802,0,1853 0/0:171,1:172:99:0,424,5466 0/1:54,44:98:99:1223,0,1689 0/1:52,35:87:99:1032,0,1488 1/1:1,86:87:99:3004,238,0 1/1:0,100:100:99:3359,268,0 1/1:0,114:114:99:3789,298,0 11 26692733 . T C 43645.69 . AC=22;AF=0.262;AN=84;BaseQRankSum=36.137;DP=5999;DS;Dels=0.00;FS=4.356;HRun=1;HaplotypeScore=1.9335;InbreedingCoeff=-0.1085;MQ=58.63;MQ0=0;MQRankSum=-6.745;QD=15.48;ReadPosRankSum=-0.714 GT:AD:DP:GQ:PL 0/0:112,0:112:99:0,313,3824 0/1:57,42:99:99:1282,0,1661 0/1:51,54:105:99:1560,0,1480 0/1:140,106:246:99:2994,0,4134 0/1:125,110:236:99:3446,0,3797 0/0:246,0:246:99:0,692,8752 0/1:101,74:175:99:2334,0,3078 0/1:119,111:230:99:3381,0,3620 0/0:94,0:95:99:0,271,3267 0/0:100,1:101:99:0,271,3320 0/1:51,54:105:99:1639,0,1337 0/0:122,0:122:99:0,331,4022 0/1:46,49:95:99:1508,0,1289 0/0:123,0:123:99:0,349,4259 0/0:229,0:230:99:0,620,7509 0/0:109,0:109:99:0,295,3613 0/0:136,0:136:99:0,376,4598 0/0:122,0:122:99:0,352,4209 0/1:80,68:148:99:1962,0,2215 0/1:84,68:152:99:1947,0,2388 0/1:95,85:180:99:2307,0,2733 0/0:85,0:85:99:0,241,2888 0/0:249,0:250:99:0,701,8640 0/0:229,0:229:99:0,641,7965 0/0:230,1:231:99:0,615,7999 0/0:238,0:238:99:0,671,8328 0/0:87,0:87:99:0,256,3096 0/0:117,1:118:99:0,331,4020 0/0:100,0:101:99:0,283,3432 0/0:115,0:115:99:0,331,4022 0/0:97,0:97:99:0,280,3361 0/1:62,60:122:99:1771,0,1660 0/1:57,52:109:99:1531,0,1631 1/1:0,106:106:99:3686,301,0 0/1:56,51:107:99:1429,0,1733 0/1:69,57:126:99:1716,0,1978 1/1:0,126:126:99:4242,340,0 0/1:63,73:136:99:2155,0,1750 0/1:65,46:112:99:1326,0,1856 0/0:118,2:120:99:0,283,3954 0/0:110,3:113:99:0,240,3738 0/1:57,47:104:99:1429,0,1630 11 26692742 . G A 39587.79 . 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C T 64485.31 . 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AGGCAC A 9415.14 . 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C CA 24.23 . 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G A 31272.68 . AC=17;AF=0.202;AN=84;BaseQRankSum=-43.663;DP=6138;DS;Dels=0.00;FS=11.987;HRun=0;HaplotypeScore=2.0709;InbreedingCoeff=-0.2537;MQ=59.37;MQ0=0;MQRankSum=1.162;QD=12.70;ReadPosRankSum=0.631 GT:AD:DP:GQ:PL 0/0:115,0:115:99:0,295,3803 0/0:131,0:131:99:0,361,4639 0/0:102,0:102:99:0,274,3496 0/0:228,0:229:99:0,593,8093 0/0:217,1:218:99:0,527,7701 0/0:211,0:213:99:0,539,7426 0/1:87,86:173:99:2260,0,2701 0/1:97,73:171:99:1823,0,2996 0/0:129,2:131:99:0,256,4080 0/0:124,0:124:99:0,334,4293 0/1:40,48:88:99:1321,0,1118 0/1:63,39:102:99:1038,0,1804 0/0:94,0:94:99:0,250,3170 0/1:54,73:127:99:1996,0,1585 0/1:114,112:228:99:3003,0,3443 0/1:63,35:98:99:895,0,1877 0/0:133,0:133:99:0,355,4591 0/0:108,0:108:99:0,295,3775 0/0:171,0:171:99:0,445,5669 0/0:210,0:211:99:0,521,6771 0/0:218,0:218:99:0,530,6890 0/0:149,1:151:99:0,352,4898 0/1:97,119:216:99:3180,0,2925 0/1:96,65:161:99:1711,0,2925 0/1:92,97:189:99:2504,0,2729 0/0:153,0:153:99:0,400,5463 0/1:34,43:77:99:1198,0,986 0/1:69,70:139:99:1957,0,2091 0/0:116,0:116:99:0,316,4063 0/0:126,0:126:99:0,334,4290 0/1:51,68:120:99:1874,0,1453 0/1:103,83:187:99:1974,0,2976 0/1:61,58:119:99:1492,0,1701 0/0:119,1:120:99:0,286,4015 0/1:78,45:124:99:1149,0,2308 0/1:72,71:144:99:1898,0,1987 0/0:198,0:198:99:0,494,6389 0/0:130,3:133:99:0,278,4343 0/0:119,0:119:99:0,316,4079 0/0:112,0:112:99:0,310,3941 0/0:121,1:122:99:0,291,4119 0/0:127,0:127:99:0,355,4555 11 27406935 . T C 24.85 . AC=1;AF=0.012;AN=84;BaseQRankSum=-10.853;DP=2604;DS;Dels=0.00;FS=139.011;HRun=2;HaplotypeScore=1.2846;InbreedingCoeff=-0.0122;MQ=58.98;MQ0=0;MQRankSum=0.396;QD=0.47;ReadPosRankSum=-10.838 GT:AD:DP:GQ:PL 0/0:46,9:55:99:0,105,1208 0/0:50,20:71:60:0,60,1197 0/0:37,15:52:78.23:0,78,911 0/0:51,30:81:99:0,117,1278 0/0:64,27:91:99:0,134,1819 0/0:57,27:84:53.09:0,53,1378 0/0:47,13:60:99:0,105,1198 0/0:54,19:73:99:0,117,1348 0/0:37,14:51:87.23:0,87,993 0/0:39,12:51:41.61:0,42,774 0/0:34,16:50:89.07:0,89,1022 0/0:33,13:46:41.23:0,41,788 0/0:33,12:45:93.27:0,93,1088 0/0:40,12:52:79.44:0,79,901 0/0:110,43:153:82.22:0,82,2578 0/0:39,17:56:69.78:0,70,1090 0/0:39,15:54:93.53:0,94,1041 0/0:22,11:33:45.10:0,45,507 0/0:49,17:66:22.47:0,22,1157 0/0:78,20:98:99:0,162,1848 0/0:55,16:71:99:0,132,1535 0/0:46,11:57:96.20:0,96,1054 0/0:65,25:90:99:0,144,1678 0/0:47,18:65:59.83:0,60,1024 0/0:50,13:64:99:0,114,1331 0/0:42,16:58:81.23:0,81,947 0/0:38,7:45:81.20:0,81,913 0/0:31,18:49:84.20:0,84,949 0/0:40,17:57:93.24:0,93,1052 0/0:42,7:49:62.54:0,63,937 0/0:27,12:39:40.51:0,41,720 0/0:60,9:69:99:0,132,1527 0/0:42,22:64:96.23:0,96,1071 0/0:32,11:44:72.15:0,72,809 0/0:34,15:49:58.47:0,58,868 0/0:47,19:66:96.07:0,96,1091 0/1:33,20:53:71.05:71,0,694 0/0:41,19:60:24.86:0,25,920 0/0:40,16:56:68.65:0,69,1047 0/0:33,23:57:74.40:0,74,832 0/0:46,22:68:27.49:0,27,1150 0/0:38,14:52:75.19:0,75,855 11 28134890 . G T 47.65 . AC=6;AF=0.071;AN=84;BaseQRankSum=-12.508;DP=2105;Dels=0.00;FS=1158.592;HRun=1;HaplotypeScore=0.4910;InbreedingCoeff=-0.1023;MQ=37.96;MQ0=187;MQRankSum=-4.289;QD=0.16;ReadPosRankSum=-12.659 GT:AD:DP:GQ:PL 0/0:47,12:59:99:0,99,1227 0/1:39,14:53:21.57:22,0,608 0/0:38,5:43:80.71:0,81,966 0/0:33,13:46:44.02:0,44,860 0/0:41,8:49:65.05:0,65,1150 0/1:26,11:37:8.77:9,0,568 0/0:51,16:67:99:0,118,1461 0/0:42,5:47:99:0,105,1297 0/1:30,5:35:12.71:13,0,546 0/0:29,1:30:48.15:0,48,615 0/0:40,7:47:19.20:0,19,915 0/0:51,6:57:40.34:0,40,833 0/0:33,12:45:1.04:6,0,577 0/0:46,10:56:43.55:0,44,825 0/0:110,29:139:99:0,190,2360 0/0:33,4:38:14.16:0,14,535 0/0:36,8:44:83.94:0,84,1012 0/0:34,8:42:28.42:0,28,567 0/1:50,11:61:40.26:40,0,958 0/0:44,6:50:81.24:0,81,1009 0/0:65,10:75:99:0,100,1434 0/0:45,7:53:81.23:0,81,976 0/0:48,10:58:98.35:0,98,1284 0/0:45,6:51:83.63:0,84,1064 0/1:46,21:67:39.71:40,0,1076 0/0:37,9:46:81.21:0,81,1024 0/0:26,5:31:24.53:0,25,594 0/0:44,11:55:29.20:0,29,903 0/0:38,4:42:8:0,8,713 0/0:33,14:47:37.44:0,37,749 0/0:28,4:32:45.14:0,45,575 0/0:49,8:58:92.64:0,93,1128 0/0:33,6:39:18.20:0,18,593 0/1:32,8:40:22.15:22,0,649 0/0:30,4:34:40.86:0,41,598 0/0:35,8:43:36.38:0,36,781 0/0:34,6:40:2.41:1,0,662 0/0:48,8:56:37.03:0,37,826 0/0:38,4:42:1.66:0,2,640 0/0:46,5:51:90.29:0,90,1142 0/0:40,6:46:45.99:0,46,874 0/0:46,8:54:58.58:0,59,999 11 28134974 . C A 11927.50 . AC=34;AF=0.405;AN=84;BaseQRankSum=-12.056;DP=1976;Dels=0.00;FS=34.791;HRun=3;HaplotypeScore=0.7249;InbreedingCoeff=0.0118;MQ=43.46;MQ0=65;MQRankSum=-14.232;QD=10.34;ReadPosRankSum=-1.276 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,159,1845 0/1:35,9:44:99:165,0,1008 0/1:31,7:38:87.82:88,0,907 1/1:0,46:46:99:1228,111,0 0/1:35,25:60:99:601,0,1181 1/1:0,33:33:78.22:877,78,0 0/1:39,21:61:99:503,0,1317 1/1:0,34:34:96.26:1079,96,0 0/0:34,0:34:99:0,99,1114 0/0:31,0:31:90.21:0,90,1017 0/1:22,14:36:99:333,0,635 0/0:56,0:56:99:0,159,1802 0/1:25,7:32:99:144,0,651 0/0:60,0:60:99:0,162,1862 0/1:101,36:137:99:549,0,2904 0/0:37,0:37:99:0,108,1225 1/1:0,29:29:75.21:836,75,0 0/0:39,0:39:99:0,105,1203 0/0:72,0:72:99:0,195,2251 0/1:45,13:58:99:272,0,1273 0/0:87,0:87:99:0,235,2772 0/0:53,2:55:85.97:0,86,1654 0/1:36,25:61:99:544,0,1109 0/0:63,0:63:99:0,171,2190 0/1:27,23:50:99:419,0,895 0/0:64,0:64:99:0,181,2330 0/1:16,9:25:99:232,0,459 0/0:44,0:44:99:0,123,1360 0/1:27,14:41:99:348,0,745 1/1:0,22:22:57.15:628,57,0 1/1:0,24:24:72.19:795,72,0 0/1:33,15:48:99:213,0,847 0/1:28,8:36:99:167,0,735 0/1:23,9:32:99:208,0,613 0/1:26,10:36:99:199,0,745 0/1:29,8:37:70.91:71,0,877 0/1:25,11:36:99:176,0,662 0/0:63,0:63:99:0,177,1969 0/1:13,13:26:99:326,0,387 0/1:34,14:48:99:293,0,1021 1/1:0,23:23:57.16:634,57,0 0/0:61,0:61:99:0,177,2084 11 31327244 . G C 4673.56 . AC=3;AF=0.036;AN=84;BaseQRankSum=3.073;DP=5386;DS;Dels=0.00;FS=2.133;HRun=1;HaplotypeScore=3.0793;InbreedingCoeff=-0.0370;MQ=59.46;MQ0=0;MQRankSum=0.656;QD=16.63;ReadPosRankSum=-1.400 GT:AD:DP:GQ:PL 0/0:100,1:101:99:0,277,3268 0/0:106,0:106:99:0,277,3326 0/0:92,0:92:99:0,247,2901 0/0:208,0:208:99:0,566,7015 0/0:222,0:222:99:0,593,7489 0/0:212,0:212:99:0,551,6924 0/0:177,0:177:99:0,463,5944 0/0:202,0:203:99:0,536,6716 0/0:106,0:107:99:0,277,3305 0/0:87,0:87:99:0,217,2614 0/0:95,0:95:99:0,262,2972 0/0:92,0:92:99:0,250,2937 0/0:91,0:91:99:0,235,2859 0/1:36,50:86:99:1476,0,847 0/0:250,0:250:99:0,650,7588 0/0:89,0:89:99:0,238,2808 0/0:83,0:83:99:0,223,2603 0/0:80,0:80:99:0,220,2554 0/0:168,0:168:99:0,457,5328 0/0:173,0:173:99:0,457,5504 0/0:155,0:156:99:0,406,4819 0/0:112,0:112:99:0,280,3369 0/0:209,0:209:99:0,572,7120 0/0:187,1:188:99:0,496,6243 0/0:224,0:224:99:0,584,7289 0/0:199,0:199:99:0,517,6482 0/0:70,0:70:99:0,186,2178 0/1:52,50:102:99:1490,0,1304 0/0:87,0:87:99:0,232,2645 0/0:105,0:105:99:0,271,3258 0/0:84,0:84:99:0,229,2707 0/0:176,0:176:99:0,445,5247 0/0:94,0:94:99:0,247,2941 0/0:87,0:87:99:0,235,2726 0/0:80,0:80:99:0,217,2579 0/1:36,57:93:99:1707,0,879 0/0:136,1:137:99:0,373,4360 0/0:96,0:97:99:0,259,2965 0/0:88,0:88:99:0,220,2606 0/0:100,1:101:99:0,274,3244 0/0:72,0:72:99:0,189,2193 0/0:102,0:102:99:0,280,3292 11 31327316 . C T 70612.57 . AC=50;AF=0.595;AN=84;BaseQRankSum=-20.332;DP=3751;DS;Dels=0.00;FS=5.266;HRun=1;HaplotypeScore=1.7376;InbreedingCoeff=0.1106;MQ=59.34;MQ0=0;MQRankSum=-0.336;QD=22.85;ReadPosRankSum=1.484 GT:AD:DP:GQ:PL 0/0:62,0:62:99:0,181,2289 0/0:65,0:65:99:0,178,2272 0/0:84,0:84:99:0,226,2865 1/1:0,169:169:99:5790,451,0 1/1:0,146:146:99:5180,403,0 0/0:149,0:149:99:0,415,5557 0/1:45,56:101:99:1693,0,1491 0/1:62,63:125:99:1861,0,2019 0/1:37,32:69:99:870,0,1160 0/1:26,31:57:99:853,0,811 1/1:0,50:50:99:1768,141,0 0/1:39,30:69:99:836,0,1197 1/1:0,56:56:99:1861,150,0 0/0:69,0:69:99:0,190,2452 0/1:111,87:198:99:2405,0,3173 1/1:0,48:48:99:1684,138,0 0/0:61,0:62:99:0,175,2239 1/1:0,66:66:99:2314,187,0 1/1:0,123:123:99:4187,334,0 0/1:60,73:133:99:2181,0,1626 1/1:1,112:113:99:3906,310,0 1/1:0,71:71:99:2377,190,0 0/1:70,93:163:99:2908,0,2100 0/1:70,67:137:99:1876,0,2177 1/1:0,134:134:99:4761,367,0 0/0:108,1:109:99:0,276,4094 0/1:36,20:56:99:549,0,1160 0/1:37,30:67:99:905,0,1146 0/0:61,0:61:99:0,169,2144 1/1:0,61:61:99:2139,172,0 1/1:0,50:50:99:1734,138,0 0/1:71,54:125:99:1515,0,2008 0/1:33,34:67:99:989,0,967 1/1:0,69:69:99:2441,196,0 1/1:1,56:57:99:1980,131,0 0/1:37,35:72:99:989,0,1062 0/1:58,50:108:99:1344,0,1747 1/1:0,62:62:99:2100,172,0 0/1:36,29:65:99:835,0,1101 0/1:34,26:60:99:658,0,1127 1/1:3,55:58:46.38:1765,46,0 0/1:39,46:85:99:1360,0,1168 11 32125961 . C T 21311.07 . 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T C 29105.71 . 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T C 2714.62 . 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C T 7775.24 . 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T C 4319.37 . 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A G 1642.44 . 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C T 24201.92 . 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C T 96510.86 . 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C T 3022.83 . 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G C 125.34 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.750;DP=644;Dels=0.00;FS=1.636;HRun=0;HaplotypeScore=1.0848;InbreedingCoeff=-0.0128;MQ=58.98;MQ0=0;MQRankSum=-0.105;QD=7.37;ReadPosRankSum=0.093 GT:AD:DP:GQ:PL 0/0:16,0:16:42.13:0,42,544 0/0:12,0:12:36.10:0,36,431 0/0:10,0:10:27.09:0,27,345 0/0:17,0:17:39.13:0,39,527 0/1:11,6:17:99:172,0,400 0/0:14,0:14:27.08:0,27,360 0/0:11,0:11:30.10:0,30,395 0/0:15,0:15:42.11:0,42,537 0/0:12,0:12:36.12:0,36,459 0/0:11,0:11:27.09:0,27,350 0/0:8,0:9:24.08:0,24,309 0/0:16,0:16:42.11:0,42,528 0/0:16,0:16:39.12:0,39,503 0/0:9,0:9:24.08:0,24,305 0/0:40,0:40:99:0,105,1328 0/0:11,0:11:33.08:0,33,390 0/0:13,0:14:33.11:0,33,431 0/0:14,0:14:36.08:0,36,437 0/0:15,0:15:36.11:0,36,445 0/0:21,0:21:54.17:0,54,689 0/0:19,0:21:54.16:0,54,665 0/0:18,0:18:48.13:0,48,603 0/0:33,0:33:90.29:0,90,1204 0/0:6,0:6:18.03:0,18,216 0/0:8,0:8:21.07:0,21,287 0/0:7,1:8:21.06:0,21,269 0/0:16,0:16:39.13:0,39,511 0/0:10,0:10:27.09:0,27,348 0/0:15,0:15:45.14:0,45,548 0/0:22,0:22:60.19:0,60,767 0/0:14,0:14:39.10:0,39,482 0/0:28,0:28:69.20:0,69,888 0/0:19,0:19:54.14:0,54,665 0/0:13,0:13:39.11:0,39,480 0/0:13,0:13:36.11:0,36,460 0/0:13,0:13:36.12:0,36,468 0/0:26,0:27:66.18:0,66,810 0/0:8,0:8:21.07:0,21,265 0/0:17,0:17:48.15:0,48,596 0/0:11,0:11:30.09:0,30,371 0/0:11,0:11:33.09:0,33,402 0/0:13,0:13:39.12:0,39,493 11 33604960 . C T 3690.74 . AC=18;AF=0.214;AN=84;BaseQRankSum=-13.306;DP=626;Dels=0.00;FS=2.085;HRun=1;HaplotypeScore=0.9186;InbreedingCoeff=-0.1326;MQ=59.02;MQ0=0;MQRankSum=-1.332;QD=15.98;ReadPosRankSum=-0.950 GT:AD:DP:GQ:PL 0/0:16,0:16:39.12:0,39,501 0/0:17,0:17:48.15:0,48,599 0/0:8,0:8:21.07:0,21,278 0/1:7,9:16:99:248,0,204 0/1:5,13:18:99:422,0,155 0/0:13,0:14:24.08:0,24,341 0/0:11,0:11:30.10:0,30,410 0/0:16,0:16:45.15:0,45,604 1/1:0,9:9:24.07:290,24,0 0/1:5,4:9:99:119,0,137 0/1:4,8:12:99:239,0,117 0/1:5,12:17:99:332,0,144 0/1:9,7:16:99:200,0,231 0/0:8,0:8:24.08:0,24,301 0/0:40,0:40:99:0,105,1351 0/0:10,0:10:27.09:0,27,349 0/1:9,9:18:99:180,0,273 0/1:7,7:14:99:180,0,193 0/1:10,7:17:99:189,0,298 0/0:25,0:25:69.22:0,69,892 0/0:23,0:23:66.21:0,66,838 0/0:16,0:16:39.13:0,39,503 0/0:25,0:25:69.23:0,69,948 0/1:4,3:7:86.99:87,0,144 0/1:3,5:8:95.52:163,0,96 0/1:8,4:12:99:110,0,253 0/1:8,4:12:99:114,0,213 0/0:8,0:8:21.07:0,21,273 0/1:8,11:19:99:337,0,241 0/0:20,0:20:54.17:0,54,688 0/0:12,0:12:33.11:0,33,424 0/0:22,0:22:57.17:0,57,717 0/1:6,12:18:99:330,0,124 0/0:11,0:11:33.11:0,33,420 0/0:14,0:14:42.13:0,42,534 0/0:10,0:10:30.09:0,30,376 0/0:16,0:16:45.14:0,45,561 0/1:4,5:9:96.83:151,0,97 0/0:16,0:16:48.15:0,48,614 0/0:10,0:10:24.08:0,24,307 0/0:12,0:12:36.11:0,36,454 0/0:15,0:15:45.14:0,45,569 11 33605028 . A C 347.14 . AC=23;AF=0.274;AN=84;BaseQRankSum=-11.268;DP=474;Dels=0.00;FS=163.478;HRun=2;HaplotypeScore=0.3429;InbreedingCoeff=-0.3975;MQ=58.33;MQ0=0;MQRankSum=1.058;QD=1.48;ReadPosRankSum=-5.346 GT:AD:DP:GQ:PL 0/0:7,4:11:18.06:0,18,226 0/1:8,5:13:35.66:36,0,264 0/0:9,5:14:2.40:0,2,272 0/1:7,4:11:7.48:7,0,236 0/0:7,6:13:15.05:0,15,191 0/0:2,3:5:6.02:0,6,81 0/1:5,6:11:31.26:31,0,172 0/1:4,2:6:58.93:59,0,129 0/1:7,6:13:12.37:12,0,196 0/1:5,7:12:11.64:12,0,129 0/1:7,7:14:6.68:7,0,190 0/1:4,7:11:21.11:21,0,113 0/0:3,2:5:9.03:0,9,107 0/1:5,4:9:24.90:25,0,133 0/0:21,11:32:10.87:0,11,671 0/1:3,3:6:20.60:21,0,61 0/1:4,3:7:17.46:17,0,119 0/1:6,6:12:13.29:13,0,191 0/0:13,7:20:39.12:0,39,481 0/1:8,9:17:4.48:4,0,240 0/1:9,3:12:37.19:37,0,299 0/0:7,9:16:18.05:0,18,201 0/1:5,6:12:5.64:6,0,170 0/1:2,3:5:24.58:27,0,25 0/0:1,5:6:3:0,3,28 0/0:5,0:5:15.05:0,15,183 0/0:2,6:8:6.02:0,6,76 0/1:3,1:4:18.56:19,0,87 0/0:2,4:6:6.02:0,6,72 0/0:7,7:14:21.05:0,21,245 0/1:6,2:8:6.62:7,0,183 0/0:8,7:15:24.06:0,24,279 0/1:4,8:12:17.97:18,0,101 0/0:9,8:17:24.07:0,24,273 0/0:9,6:15:27.08:0,27,320 0/0:9,4:13:27.08:0,27,312 0/0:8,7:15:1.92:3,0,261 0/1:5,6:11:16.51:17,0,132 0/1:7,6:13:9.66:10,0,126 0/0:7,3:10:21.06:0,21,243 0/1:4,3:7:50.58:51,0,95 0/1:3,5:8:51.02:51,0,61 11 33631423 . G A 41973.79 . AC=39;AF=0.464;AN=84;BaseQRankSum=-24.350;DP=3269;Dels=0.00;FS=0.543;HRun=3;HaplotypeScore=1.3086;InbreedingCoeff=-0.1966;MQ=59.35;MQ0=0;MQRankSum=-2.420;QD=16.94;ReadPosRankSum=0.350 GT:AD:DP:GQ:PL 0/1:34,35:69:99:945,0,1024 1/1:0,53:53:99:1756,141,0 0/1:26,33:59:99:927,0,740 0/0:93,0:93:99:0,232,3174 0/1:49,30:79:99:773,0,1452 1/1:0,71:71:99:2547,199,0 0/1:43,30:74:99:821,0,1239 0/1:32,30:62:99:867,0,1019 0/0:57,0:57:99:0,150,1935 0/0:71,2:73:99:0,145,2327 0/1:39,36:75:99:1020,0,1218 0/0:68,0:68:99:0,190,2403 0/0:69,0:69:99:0,190,2427 0/0:68,0:68:99:0,187,2370 1/1:0,200:200:99:6291,500,0 0/1:31,27:58:99:640,0,999 0/1:38,25:63:99:690,0,1150 0/1:31,27:58:99:724,0,918 0/0:151,0:151:99:0,379,4912 0/1:63,58:122:99:1588,0,1864 0/1:95,49:145:99:1158,0,2764 1/1:2,79:81:99:2428,132,0 0/1:40,55:95:99:1602,0,1270 0/1:27,26:53:99:795,0,852 0/1:40,45:85:99:1293,0,1246 0/1:28,31:59:99:766,0,943 0/1:25,22:47:99:623,0,825 0/1:36,35:72:99:923,0,1053 0/1:24,31:55:99:861,0,673 1/1:1,54:55:99:1686,106,0 1/1:0,43:43:99:1479,120,0 0/1:71,57:128:99:1419,0,2075 0/1:47,48:95:99:1360,0,1467 0/1:44,29:73:99:747,0,1389 1/1:2,62:64:95.91:1936,96,0 0/0:78,1:79:99:0,172,2627 0/1:60,37:97:99:995,0,1731 0/1:42,31:73:99:808,0,1301 0/0:64,1:65:99:0,151,2348 0/1:32,24:56:99:679,0,932 0/1:28,31:59:99:826,0,829 0/0:68,0:68:99:0,199,2537 11 33640104 . A C 20947.71 . AC=60;AF=0.714;AN=84;BaseQRankSum=-10.775;DP=1055;Dels=0.00;FS=6.528;HRun=1;HaplotypeScore=0.5596;InbreedingCoeff=-0.1112;MQ=59.05;MQ0=0;MQRankSum=-0.049;QD=20.66;ReadPosRankSum=0.678 GT:AD:DP:GQ:PL 0/1:13,16:29:99:388,0,387 1/1:0,23:23:60.15:678,60,0 0/1:10,13:23:99:249,0,216 0/1:19,12:31:99:269,0,524 1/1:0,32:32:87.22:1000,87,0 1/1:0,28:28:72.20:871,72,0 1/1:1,24:25:63.17:755,63,0 0/1:13,16:29:99:429,0,350 0/1:8,10:18:99:269,0,212 0/1:9,11:20:99:259,0,267 0/1:8,10:18:99:258,0,187 1/1:0,19:19:51.12:550,51,0 0/1:9,8:17:99:176,0,271 0/1:12,6:18:99:159,0,329 1/1:0,72:72:99:2100,177,0 1/1:0,15:15:42.11:480,42,0 1/1:0,18:18:54.12:580,54,0 1/1:0,18:18:48.11:562,48,0 0/1:20,27:47:99:700,0,457 0/1:20,13:33:99:285,0,595 0/1:13,18:32:99:437,0,265 1/1:0,22:22:60.12:665,60,0 0/1:19,8:27:99:184,0,574 1/1:1,23:24:60.17:730,60,0 1/1:0,25:25:66.20:814,66,0 1/1:0,26:26:69.21:857,69,0 1/1:0,22:22:48.13:552,48,0 0/1:9,10:19:99:235,0,280 1/1:0,23:23:66.11:693,66,0 1/1:0,29:29:75.18:853,75,0 1/1:0,10:11:27.06:308,27,0 0/1:19,17:36:99:437,0,531 1/1:0,23:24:66.14:715,66,0 0/1:9,11:20:99:329,0,220 1/1:0,22:22:60.16:704,60,0 0/1:12,1:13:1.88:0,3,363 0/1:22,21:43:99:497,0,618 1/1:0,13:13:39.08:442,39,0 0/0:19,0:19:54.17:0,54,659 0/1:18,10:28:99:238,0,503 0/1:12,10:22:99:238,0,312 0/0:22,0:22:66.19:0,66,784 11 33680371 . C T 2649.81 . AC=26;AF=0.317;AN=82;BaseQRankSum=2.583;DP=306;Dels=0.00;FS=2.122;HRun=0;HaplotypeScore=0.3152;InbreedingCoeff=-0.1691;MQ=58.67;MQ0=1;MQRankSum=-0.515;QD=14.56;ReadPosRankSum=-0.268 GT:AD:DP:GQ:PL 0/1:5,1:6:19.31:19,0,125 0/1:5,3:8:84.67:85,0,121 0/0:6,0:6:15.04:0,15,171 0/0:11,0:11:27.08:0,27,343 0/0:7,0:7:21.06:0,21,248 0/1:2,3:5:61.32:100,0,61 0/0:1,0:1:3.01:0,3,37 0/1:3,3:6:59.52:88,0,60 0/1:6,1:7:8.56:9,0,191 0/0:7,0:7:18.05:0,18,205 0/0:6,0:6:18.05:0,18,210 0/0:13,0:13:36.08:0,36,397 0/0:2,0:2:6.02:0,6,72 0/0:7,0:7:18.03:0,18,192 0/1:4,7:11:99:206,0,112 0/0:5,0:5:12.04:0,12,143 0/0:2,0:2:6.02:0,6,67 0/1:4,6:10:98.47:186,0,98 0/1:1,7:8:20.53:158,0,21 0/1:5,5:10:99:144,0,144 0/0:14,0:15:36.09:0,36,426 0/1:8,4:12:99:102,0,206 0/1:3,5:8:42.28:160,0,42 ./. 1/1:0,4:4:9.03:111,9,0 0/0:9,0:9:27.08:0,27,328 0/0:2,0:2:6.02:0,6,68 0/0:10,0:10:24.06:0,24,273 0/1:1,1:2:26.48:29,0,26 1/1:0,7:7:18.04:208,18,0 1/1:0,8:8:24.07:285,24,0 0/1:4,9:13:97.63:250,0,98 0/1:5,3:8:80.75:81,0,141 0/0:8,0:8:24.05:0,24,260 0/1:2,7:9:46.34:200,0,46 0/0:8,0:8:18.05:0,18,210 0/1:12,3:15:59.91:60,0,349 0/1:5,2:7:54.53:55,0,154 0/1:5,1:6:18.93:19,0,146 0/1:2,8:10:42.84:253,0,43 0/1:1,1:2:26.48:29,0,26 0/0:5,0:5:12.04:0,12,148 11 34130342 . A G 3890.17 . AC=6;AF=0.071;AN=84;BaseQRankSum=-5.161;DP=2669;Dels=0.00;FS=4.023;HRun=1;HaplotypeScore=1.2410;InbreedingCoeff=-0.0769;MQ=59.41;MQ0=0;MQRankSum=-0.390;QD=13.55;ReadPosRankSum=-2.326 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,114,1396 0/0:49,0:49:99:0,123,1562 0/1:22,21:43:99:523,0,610 0/0:92,0:92:99:0,250,3208 0/0:121,0:122:99:0,316,4026 0/0:103,1:104:99:0,265,3435 0/0:78,0:78:99:0,205,2655 0/0:99,0:99:99:0,253,3237 0/0:54,0:54:99:0,147,1840 0/0:44,0:45:99:0,117,1458 0/0:47,0:47:99:0,129,1591 0/0:51,0:52:99:0,150,1809 0/0:37,0:37:99:0,105,1291 0/0:39,0:40:99:0,117,1422 0/0:147,0:148:99:0,406,4964 0/0:41,0:41:99:0,117,1432 0/0:58,0:58:99:0,159,1971 0/1:24,17:41:99:484,0,698 0/1:27,37:64:99:959,0,740 0/0:72,0:73:99:0,196,2410 0/0:82,0:82:99:0,205,2568 0/0:55,0:55:99:0,147,1840 0/0:128,0:128:99:0,337,4307 0/0:102,0:102:99:0,259,3341 0/0:92,0:92:99:0,253,3262 0/0:90,0:90:99:0,223,2906 0/0:37,0:37:99:0,105,1303 0/1:15,24:39:99:684,0,443 0/0:33,0:33:84.26:0,84,1064 0/0:54,0:54:99:0,153,1876 0/0:54,0:54:99:0,138,1739 0/0:66,0:66:99:0,178,2192 0/0:49,0:49:99:0,123,1541 0/0:50,0:50:99:0,135,1693 0/0:45,0:45:99:0,117,1452 0/0:57,0:57:99:0,153,1929 0/1:23,20:43:99:472,0,622 0/0:54,0:54:99:0,150,1857 0/1:28,29:57:99:767,0,884 0/0:64,0:64:99:0,172,2132 0/0:47,0:47:99:0,135,1647 0/0:43,0:43:99:0,123,1518 11 34152939 . T C 116182.02 . AC=84;AF=1.000;AN=84;BaseQRankSum=2.136;DP=3281;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8007;InbreedingCoeff=-0.0000;MQ=59.24;MQ0=0;MQRankSum=0.449;QD=35.41;ReadPosRankSum=2.369 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2269,181,0 1/1:0,61:61:99:2127,166,0 1/1:0,52:52:99:1790,144,0 1/1:0,146:147:99:5136,382,0 1/1:0,139:139:99:5030,373,0 1/1:0,106:106:99:3845,286,0 1/1:0,108:108:99:3838,283,0 1/1:0,79:79:99:2883,220,0 1/1:0,55:55:99:1976,156,0 1/1:0,45:45:99:1652,132,0 1/1:0,65:65:99:2256,181,0 1/1:0,57:57:99:2077,166,0 1/1:0,36:36:99:1244,99,0 1/1:0,50:50:99:1833,150,0 1/1:0,206:206:99:7253,572,0 1/1:0,50:50:99:1780,144,0 1/1:0,60:60:99:1978,156,0 1/1:0,57:57:99:2025,160,0 1/1:0,103:103:99:3679,292,0 1/1:0,138:138:99:4862,382,0 1/1:0,119:119:99:4224,334,0 1/1:1,69:70:99:2498,175,0 1/1:1,149:150:99:5367,371,0 1/1:0,90:90:99:3129,238,0 1/1:0,88:88:99:3000,220,0 1/1:0,73:74:99:2769,208,0 1/1:0,33:33:90.27:1118,90,0 1/1:0,54:54:99:1953,159,0 1/1:0,50:50:99:1728,138,0 1/1:0,73:73:99:2477,196,0 1/1:0,70:70:99:2584,205,0 1/1:0,102:102:99:3676,289,0 1/1:0,74:74:99:2535,205,0 1/1:0,51:51:99:1813,144,0 1/1:0,48:49:99:1697,135,0 1/1:0,57:57:99:2039,160,0 1/1:0,107:108:99:3665,304,0 1/1:0,59:59:99:2023,160,0 1/1:0,55:55:99:1955,156,0 1/1:0,58:58:99:2081,166,0 1/1:0,60:60:99:2141,172,0 1/1:0,60:60:99:2176,175,0 11 34194817 . G C 3.71 . 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C A 590.77 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.159;DP=2519;Dels=0.00;FS=2.716;HRun=0;HaplotypeScore=1.6832;InbreedingCoeff=-0.0120;MQ=59.33;MQ0=0;MQRankSum=1.868;QD=10.94;ReadPosRankSum=0.621 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,117,1467 0/0:32,0:32:90.28:0,90,1145 0/0:50,0:50:99:0,126,1623 0/0:161,0:161:99:0,409,5544 0/0:116,0:116:99:0,295,4030 0/0:95,0:95:99:0,247,3331 0/0:58,0:58:99:0,144,1949 0/0:74,0:74:99:0,193,2614 0/0:34,0:34:96.31:0,96,1241 0/0:44,0:44:99:0,108,1399 0/0:39,0:39:99:0,105,1319 0/0:36,0:36:99:0,105,1323 0/0:30,0:30:81.26:0,81,1037 0/0:46,0:46:99:0,132,1680 0/0:150,0:150:99:0,382,4910 0/0:46,0:46:99:0,126,1571 0/0:32,0:32:93.27:0,93,1166 0/0:41,0:41:99:0,120,1513 0/0:58,0:58:99:0,138,1804 0/0:83,0:83:99:0,214,2743 0/0:67,0:67:99:0,163,2094 0/0:51,0:51:99:0,141,1788 0/0:140,0:140:99:0,358,4881 0/0:60,0:60:99:0,153,2084 0/0:77,0:78:99:0,184,2513 0/1:29,25:54:99:637,0,898 0/0:26,0:26:75.23:0,75,928 0/0:30,0:30:90.28:0,90,1135 0/0:44,0:44:99:0,120,1540 0/0:57,0:58:99:0,150,1918 0/0:37,0:37:99:0,102,1299 0/0:91,0:91:99:0,247,3174 0/0:63,0:63:99:0,160,2053 0/0:44,0:44:99:0,120,1532 0/0:41,0:41:99:0,99,1288 0/0:49,0:49:99:0,138,1731 0/0:81,0:81:99:0,214,2743 0/0:43,0:43:99:0,117,1502 0/0:35,0:35:93.30:0,93,1198 0/0:52,0:52:99:0,132,1700 0/0:45,0:45:99:0,123,1560 0/0:63,0:63:99:0,166,2143 11 34668143 . C T 42103.61 . 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T A 5356.54 . 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G C 1061.19 . AC=28;AF=0.333;AN=84;BaseQRankSum=-13.472;DP=1521;Dels=0.00;FS=337.845;HRun=1;HaplotypeScore=1.5682;InbreedingCoeff=-0.5044;MQ=58.56;MQ0=0;MQRankSum=-0.972;QD=1.03;ReadPosRankSum=-8.300 GT:AD:DP:GQ:PL 0/1:11,16:27:3.43:3,0,267 0/0:20,16:36:8.51:0,9,390 0/1:14,11:25:13.78:14,0,411 0/0:28,20:48:7.81:0,8,627 0/1:18,38:56:47.45:47,0,539 0/0:24,23:47:22.43:0,22,524 0/0:19,23:42:1.72:0,2,459 0/0:26,19:45:1.10:0,1,610 0/1:15,9:25:40.63:41,0,427 0/1:10,11:21:10.49:10,0,205 0/0:18,14:32:11.03:0,11,437 0/1:19,14:33:8.05:8,0,494 0/1:22,12:34:73.71:74,0,500 0/1:13,13:26:57.63:58,0,267 0/1:51,47:98:99:240,0,1349 0/0:12,10:22:5.39:0,5,268 0/1:19,19:38:17.14:17,0,406 0/1:17,11:28:6.03:6,0,327 0/1:14,21:35:21.13:21,0,362 0/0:45,14:59:84.21:0,84,1005 0/1:25,18:43:99:115,0,611 0/1:19,17:36:57.50:58,0,383 0/1:27,26:53:57.82:58,0,718 0/1:25,25:50:15.36:15,0,508 0/1:30,33:64:77.04:77,0,750 0/1:16,39:55:88.86:89,0,299 0/0:6,14:20:15.03:0,15,176 0/1:11,17:28:63.60:64,0,228 0/1:13,19:33:43.36:43,0,381 0/0:16,15:31:33.10:0,33,414 0/0:13,9:22:36.06:0,36,427 0/0:16,14:30:33.07:0,33,381 0/0:20,10:30:12.64:0,13,489 0/1:11,11:22:2.54:3,0,276 0/1:17,16:33:22.15:22,0,326 0/0:18,9:27:11.98:0,12,400 0/1:18,7:25:15.90:16,0,437 0/1:18,13:31:43.22:43,0,391 0/1:12,15:27:17.18:17,0,340 0/1:19,18:37:37.52:38,0,502 0/1:9,13:22:7.50:8,0,228 0/1:12,13:25:24.07:24,0,329 11 34910397 . C T 26968.56 . AC=37;AF=0.440;AN=84;BaseQRankSum=-32.637;DP=2490;Dels=0.00;FS=9.516;HRun=0;HaplotypeScore=0.6644;InbreedingCoeff=-0.1110;MQ=59.25;MQ0=3;MQRankSum=0.293;QD=15.77;ReadPosRankSum=-0.894 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,141,1772 0/0:58,0:58:99:0,159,2002 0/1:24,22:46:99:599,0,692 0/1:38,40:78:99:1101,0,1245 0/1:52,55:107:99:1588,0,1523 0/1:52,59:111:99:1576,0,1651 0/1:54,39:93:99:1084,0,1705 0/0:82,0:82:99:0,229,3085 1/1:1,53:54:98.39:1553,98,0 0/1:19,18:37:99:394,0,544 1/1:1,40:41:72.71:1228,73,0 0/1:32,23:55:99:597,0,904 0/1:23,12:35:99:301,0,678 0/0:47,0:47:99:0,126,1627 0/1:93,78:171:99:2051,0,2634 0/1:16,13:29:99:366,0,506 0/1:34,18:52:99:458,0,1024 1/1:0,37:37:99:1258,111,0 0/1:24,26:50:99:702,0,686 0/0:50,0:50:99:0,117,1517 1/1:0,49:49:99:1568,132,0 1/1:0,30:30:81.24:965,81,0 1/1:2,73:75:99:2380,160,0 0/0:86,1:87:99:0,198,3128 0/0:115,0:115:99:0,304,4158 0/0:83,0:83:99:0,226,3026 0/0:56,0:56:99:0,156,1983 0/1:25,22:47:99:635,0,731 0/1:25,13:38:99:322,0,716 0/0:39,0:39:99:0,102,1290 0/1:23,21:44:99:613,0,742 0/1:29,25:54:99:641,0,835 0/1:35,17:52:99:393,0,1001 0/1:24,20:44:99:554,0,732 0/1:33,20:53:99:487,0,983 1/1:0,49:49:99:1616,138,0 0/0:51,0:51:99:0,135,1744 0/1:25,20:45:99:513,0,746 0/1:20,22:43:99:577,0,591 0/1:37,19:56:99:444,0,1144 0/1:19,16:35:99:407,0,553 0/0:60,0:60:99:0,159,2036 11 34937813 . G A 7022.07 . AC=37;AF=0.440;AN=84;BaseQRankSum=1.034;DP=558;Dels=0.00;FS=0.657;HRun=1;HaplotypeScore=0.4332;InbreedingCoeff=-0.1133;MQ=58.82;MQ0=0;MQRankSum=-0.131;QD=18.43;ReadPosRankSum=0.654 GT:AD:DP:GQ:PL 0/0:12,0:12:30.08:0,30,345 0/0:11,0:11:27.08:0,27,328 0/1:7,7:14:99:191,0,181 0/1:9,18:28:99:471,0,260 0/1:16,17:33:99:439,0,413 0/1:8,9:17:99:249,0,181 0/1:10,5:15:99:146,0,265 0/0:21,0:21:51.16:0,51,655 1/1:0,12:12:30.09:367,30,0 0/1:3,3:6:56.19:56,0,80 1/1:0,11:11:27.08:333,27,0 0/1:7,7:14:99:184,0,173 0/1:6,3:9:74.73:75,0,153 0/0:16,0:16:39.11:0,39,466 0/1:10,16:26:99:417,0,226 0/1:3,6:9:72.61:142,0,73 0/1:5,5:10:99:108,0,132 1/1:0,7:7:18.06:217,18,0 0/1:3,9:12:28.10:257,0,28 0/0:16,0:16:39.12:0,39,487 1/1:0,23:23:54.17:685,54,0 1/1:0,7:7:18.03:205,18,0 1/1:0,30:30:69.21:883,69,0 0/0:18,0:18:42.13:0,42,548 0/0:17,0:17:42.11:0,42,526 0/0:18,0:18:45.13:0,45,560 0/0:14,0:14:39.10:0,39,450 0/1:7,4:11:99:119,0,183 0/1:3,5:8:88.59:135,0,89 0/0:8,0:8:21.02:0,21,217 0/1:3,2:5:49.64:50,0,59 0/1:4,7:11:99:198,0,110 0/1:3,9:12:55.47:238,0,55 0/1:3,3:6:67.49:89,0,67 0/1:3,2:5:32.72:33,0,94 1/1:0,10:10:27.08:332,27,0 0/0:22,0:22:54.14:0,54,622 0/1:2,5:7:14.45:160,0,14 0/1:8,4:12:99:106,0,195 0/1:1,3:4:19.54:78,0,20 0/1:5,2:7:58.91:59,0,97 0/0:4,0:4:12.03:0,12,134 11 34988256 . CA C 2078.03 . 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A C 6615.02 . 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A ACCTCCAGCCCCCC 18498.86 . 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T C 4166.18 . 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T C 59959.33 . AC=59;AF=0.702;AN=84;BaseQRankSum=29.141;DP=2415;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.0340;InbreedingCoeff=-0.0820;MQ=59.49;MQ0=0;MQRankSum=-0.397;QD=26.48;ReadPosRankSum=1.106 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,126,1513 0/1:16,20:36:99:625,0,396 1/1:0,35:35:93.30:1221,93,0 1/1:0,111:111:99:4129,304,0 1/1:0,111:111:99:4381,319,0 0/1:48,41:89:99:1288,0,1411 0/1:45,44:89:99:1341,0,1281 0/1:45,39:84:99:1251,0,1319 1/1:0,46:46:99:1601,126,0 1/1:0,39:39:99:1349,105,0 0/1:17,25:42:99:707,0,491 1/1:0,44:44:99:1587,123,0 0/1:15,19:34:99:631,0,391 0/1:21,18:39:99:474,0,618 1/1:0,165:165:99:5475,418,0 1/1:1,27:28:48.14:983,48,0 1/1:1,38:39:76.57:1374,77,0 1/1:0,36:36:99:1279,99,0 1/1:0,50:50:99:1713,135,0 1/1:0,60:60:99:1996,153,0 1/1:0,63:63:99:2226,172,0 1/1:0,23:23:63.20:807,63,0 1/1:0,127:127:99:4801,349,0 0/1:39,43:82:99:1393,0,1056 0/1:51,59:110:99:1857,0,1450 1/1:0,64:65:99:2386,175,0 0/1:18,16:34:99:477,0,518 1/1:0,48:48:99:1726,135,0 0/1:29,31:60:99:908,0,775 0/0:46,0:46:99:0,126,1501 0/1:16,17:33:99:498,0,477 1/1:0,51:51:99:1775,138,0 0/1:23,17:40:99:492,0,624 0/1:23,30:53:99:970,0,642 0/1:21,22:43:99:679,0,598 1/1:0,41:41:99:1466,114,0 0/0:57,0:58:99:0,153,1869 0/1:21,24:45:99:730,0,568 0/1:14,13:27:99:417,0,424 1/1:0,46:46:99:1666,132,0 0/1:25,18:43:99:532,0,766 0/1:28,25:53:99:748,0,808 11 34999682 . G C 960.73 . 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T G 3220.76 . AC=32;AF=0.381;AN=84;BaseQRankSum=-41.693;DP=3954;Dels=0.00;FS=1128.264;HRun=2;HaplotypeScore=3.1949;InbreedingCoeff=-0.5996;MQ=59.07;MQ0=0;MQRankSum=-0.181;QD=0.99;ReadPosRankSum=-15.038 GT:AD:DP:GQ:PL 0/1:36,33:69:39.33:39,0,971 0/0:43,27:71:30.25:0,30,1272 0/1:31,24:55:99:133,0,925 0/1:86,103:189:99:319,0,2424 0/1:88,99:187:99:119,0,2641 0/1:67,78:145:99:99,0,1807 0/1:62,72:134:22.92:23,0,1599 0/1:68,81:149:52.83:53,0,1783 0/1:39,27:66:73.78:74,0,1099 0/1:31,39:70:99:127,0,871 0/1:42,31:74:51.13:51,0,1174 0/0:55,20:75:97.15:0,97,1643 0/1:40,29:69:70.94:71,0,1087 0/1:32,25:57:99:144,0,925 0/1:113,119:232:99:246,0,3044 0/1:33,23:56:6.37:6,0,927 0/1:43,31:74:5.55:6,0,1277 0/1:38,27:66:18.90:19,0,1070 0/1:55,47:102:99:248,0,1546 0/0:54,39:94:47.77:0,48,1511 0/1:46,48:94:99:325,0,1295 0/0:44,18:62:47.52:0,48,1346 0/1:80,114:194:99:338,0,2301 0/1:67,86:153:67.67:68,0,1799 0/1:81,69:151:99:109,0,2234 0/1:71,61:132:35.40:35,0,2003 0/0:25,17:42:75.21:0,75,878 0/0:30,30:60:34.76:0,35,890 0/1:36,25:61:43.34:43,0,959 0/1:30,27:57:99:100,0,929 0/1:34,33:67:73.64:74,0,982 0/0:70,36:106:99:0,118,2047 0/0:48,29:77:41.71:0,42,1410 0/1:36,24:60:16.53:17,0,1077 0/1:49,32:81:2.40:2,0,1463 0/1:50,33:83:6.04:6,0,1283 0/1:47,34:81:99:245,0,1294 0/1:45,38:83:99:134,0,1258 0/0:36,27:63:30.24:0,30,1077 0/1:45,31:76:90.80:91,0,1210 0/0:34,28:62:0.10:0,0,1011 0/1:43,32:75:29.97:30,0,1183 11 35006196 . C G 15.66 . AC=1;AF=0.012;AN=84;BaseQRankSum=-9.232;DP=3443;Dels=0.00;FS=206.087;HRun=2;HaplotypeScore=3.0510;InbreedingCoeff=-0.0200;MQ=59.01;MQ0=0;MQRankSum=0.030;QD=0.21;ReadPosRankSum=-9.814 GT:AD:DP:GQ:PL 0/0:54,12:66:89.65:0,90,1301 0/0:53,7:60:99:0,138,1648 0/0:42,11:53:99:0,105,1296 0/0:131,40:171:99:0,150,3280 0/0:127,42:169:99:0,197,3584 0/0:104,15:119:99:0,179,2596 0/0:97,19:116:99:0,190,2400 0/0:99,17:116:99:0,146,2472 0/0:49,5:54:99:0,117,1421 0/0:46,10:56:66.61:0,67,1117 0/0:63,4:67:99:0,107,1519 0/0:58,7:65:99:0,138,1664 0/0:48,12:60:84.80:0,85,1339 0/0:42,13:55:47.98:0,48,1080 0/0:151,41:193:99:0,296,4255 0/0:38,5:43:93.23:0,93,1112 0/0:61,9:70:94.84:0,95,1497 0/0:53,5:59:99:0,102,1442 0/0:67,20:87:1.91:3,0,1830 0/0:82,9:91:99:0,159,1839 0/0:67,20:87:58.09:0,58,1713 0/0:53,5:58:99:0,101,1500 0/0:129,35:164:99:0,157,3084 0/0:115,16:131:99:0,202,2560 0/0:110,19:129:99:0,214,2733 0/0:99,10:110:99:0,170,2415 0/0:33,3:36:75.23:0,75,920 0/0:46,7:53:93.27:0,93,1129 0/0:47,7:54:99:0,102,1199 0/0:43,11:54:99:0,99,1215 0/0:46,14:60:68.72:0,69,1188 0/0:82,11:93:99:0,180,2378 0/0:58,10:68:78.60:0,79,1496 0/0:44,7:51:85.61:0,86,1245 0/0:65,8:73:99:0,110,1694 0/0:60,10:70:63.73:0,64,1373 0/1:56,17:73:61.56:62,0,1624 0/0:62,10:73:99:0,126,1512 0/0:43,10:53:96.27:0,96,1171 0/0:53,9:62:35.97:0,36,1379 0/0:50,10:60:99:0,105,1216 0/0:48,13:61:78.77:0,79,1274 11 35229673 . T C 127546.31 . 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T C 26324.72 . 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T C 20316.57 . 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A C 4965.45 . 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T C 97163.58 . 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G A 308.73 . 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C T 5665.44 . 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G A 8554.71 . AC=12;AF=0.143;AN=84;BaseQRankSum=-11.654;DP=2003;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=8.1118;InbreedingCoeff=0.0278;MQ=58.96;MQ0=0;MQRankSum=0.038;QD=15.28;ReadPosRankSum=-1.018 GT:AD:DP:GQ:PL 0/0:31,0:31:81.26:0,81,1045 0/0:37,0:37:99:0,105,1331 0/0:35,0:36:96.30:0,96,1227 0/1:49,50:99:99:1343,0,1531 0/1:30,32:62:99:872,0,798 0/1:28,25:53:99:637,0,798 0/1:13,18:32:99:562,0,397 0/0:52,0:52:99:0,132,1797 1/1:0,31:31:84.25:1033,84,0 0/1:10,12:22:99:302,0,256 0/1:19,22:41:99:658,0,542 0/0:31,0:31:84.27:0,84,1074 0/0:34,0:34:87.27:0,87,1119 0/0:36,0:36:96.31:0,96,1248 0/0:130,0:130:99:0,328,4270 0/0:33,0:33:90.28:0,90,1138 0/1:11,15:26:99:399,0,343 0/0:36,0:36:99:0,99,1256 0/0:70,0:70:99:0,190,2412 0/0:74,0:74:99:0,193,2486 0/1:36,47:83:99:1358,0,1053 0/0:54,0:54:99:0,141,1831 0/0:107,0:107:99:0,268,3664 0/0:31,0:31:78.25:0,78,1069 0/0:45,0:45:99:0,102,1419 0/0:45,0:45:99:0,120,1647 0/0:30,0:30:84.25:0,84,1059 0/0:36,0:36:99:0,102,1278 0/1:12,11:23:99:323,0,389 0/0:46,0:46:99:0,126,1616 0/0:30,0:30:78.25:0,78,1019 0/1:49,39:88:99:1066,0,1330 0/0:57,0:57:99:0,156,2006 0/0:30,0:30:81.25:0,81,1029 0/0:33,0:33:93.30:0,93,1211 0/0:42,0:42:99:0,114,1460 0/0:70,0:70:99:0,187,2375 0/0:36,0:36:99:0,105,1330 0/0:43,0:43:99:0,108,1398 0/0:46,0:46:99:0,123,1587 0/0:41,0:41:99:0,108,1388 0/0:21,0:21:57.18:0,57,740 11 44636839 . C T 17949.76 . AC=29;AF=0.345;AN=84;BaseQRankSum=-6.531;DP=2032;Dels=0.00;FS=9.477;HRun=0;HaplotypeScore=7.9782;InbreedingCoeff=-0.0006;MQ=58.94;MQ0=0;MQRankSum=1.099;QD=15.79;ReadPosRankSum=0.124 GT:AD:DP:GQ:PL 0/1:14,17:31:99:484,0,359 0/1:21,17:38:99:447,0,529 0/0:33,1:34:90.26:0,90,1064 0/0:101,0:101:99:0,262,3337 0/0:61,0:61:99:0,150,1950 0/0:52,0:52:99:0,126,1647 0/1:18,13:31:99:306,0,570 0/0:56,0:56:99:0,138,1744 0/0:31,0:31:90.22:0,90,1032 0/1:14,10:24:99:235,0,328 0/0:40,0:40:99:0,108,1316 0/1:13,15:28:99:398,0,360 0/0:35,0:35:90.27:0,90,1117 0/1:13,18:32:99:484,0,356 0/1:61,71:133:99:1777,0,1473 1/1:0,31:31:81.24:972,81,0 0/0:24,0:24:63.17:0,63,751 0/1:15,26:41:99:649,0,403 0/0:62,0:64:99:0,174,2038 0/1:44,34:79:99:831,0,1197 0/0:83,0:83:99:0,223,2637 0/1:28,23:51:99:555,0,775 0/0:112,0:112:99:0,271,3502 1/1:0,34:34:87.23:1051,87,0 1/1:0,46:47:99:1294,102,0 0/1:34,15:49:99:360,0,981 0/1:19,11:30:99:300,0,513 0/1:19,20:39:99:551,0,464 0/0:24,0:24:63.15:0,63,726 0/1:20,25:45:99:670,0,478 0/0:32,1:33:87.24:0,87,1051 0/1:47,52:100:99:1247,0,1238 1/1:1,51:52:99:1698,147,0 0/0:33,0:33:90.24:0,90,1052 0/1:20,16:36:99:443,0,521 0/0:42,0:42:99:0,111,1340 0/1:32,35:68:99:928,0,818 1/1:1,33:34:74.58:1063,75,0 0/0:45,0:45:99:0,111,1337 0/1:19,26:45:99:747,0,467 0/1:21,17:39:99:461,0,561 0/0:25,0:25:66.16:0,66,773 11 44640225 . G A 1911.56 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.996;DP=2713;Dels=0.00;FS=8.055;HRun=2;HaplotypeScore=3.0969;InbreedingCoeff=-0.0244;MQ=58.94;MQ0=0;MQRankSum=-0.270;QD=12.02;ReadPosRankSum=-0.076 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,99,1219 0/0:41,0:41:99:0,111,1382 0/0:42,0:42:99:0,120,1488 0/0:165,0:165:99:0,439,5796 0/0:162,0:162:99:0,454,6003 0/1:44,31:75:99:894,0,1412 0/0:78,0:78:99:0,214,2824 0/1:44,40:84:99:1080,0,1223 0/0:52,0:53:99:0,147,1836 0/0:41,0:41:99:0,117,1410 0/0:31,0:31:87.27:0,87,1083 0/0:43,0:43:99:0,120,1533 0/0:34,0:34:96.27:0,96,1172 0/0:38,0:38:99:0,102,1277 0/0:112,0:112:99:0,301,3714 0/0:55,0:55:99:0,153,1873 0/0:51,0:51:99:0,141,1786 0/0:34,0:34:93.28:0,93,1150 0/0:73,0:73:99:0,208,2511 0/0:98,0:98:99:0,271,3378 0/0:79,0:79:99:0,217,2661 0/0:45,0:45:99:0,120,1520 0/0:165,0:165:99:0,463,6071 0/0:70,0:70:99:0,190,2463 0/0:103,0:103:99:0,298,3959 0/0:97,0:97:99:0,253,3293 0/0:37,0:37:99:0,102,1268 0/0:49,0:49:99:0,135,1664 0/0:39,0:39:99:0,105,1307 0/0:49,0:49:99:0,135,1666 0/0:52,0:52:99:0,153,1900 0/0:75,0:75:99:0,211,2611 0/0:57,0:57:99:0,162,1988 0/0:42,0:42:99:0,117,1413 0/0:35,0:35:99:0,102,1253 0/0:63,0:63:99:0,172,2142 0/0:77,0:77:99:0,220,2709 0/0:45,0:45:99:0,129,1586 0/0:54,0:54:99:0,147,1812 0/0:42,0:42:99:0,120,1485 0/0:37,0:37:99:0,108,1325 0/0:54,0:54:99:0,153,1874 11 44640268 . A G 31972.19 . AC=54;AF=0.643;AN=84;BaseQRankSum=13.406;DP=1727;Dels=0.00;FS=0.337;HRun=0;HaplotypeScore=1.2096;InbreedingCoeff=-0.2444;MQ=58.82;MQ0=0;MQRankSum=0.463;QD=19.90;ReadPosRankSum=-2.907 GT:AD:DP:GQ:PL 1/1:0,30:30:87.24:1002,87,0 0/1:8,14:22:99:428,0,207 0/0:33,0:33:93.26:0,93,1071 0/1:59,39:98:99:1180,0,1741 0/1:52,51:103:99:1668,0,1493 0/1:21,32:53:99:1112,0,603 1/1:0,48:48:99:1848,144,0 0/0:54,1:55:99:0,162,1911 1/1:0,34:34:96.29:1153,96,0 1/1:0,22:22:66.17:760,66,0 0/1:12,6:18:99:165,0,337 1/1:0,27:27:78.22:912,78,0 1/1:0,23:23:66.18:774,66,0 0/1:18,17:35:99:446,0,536 0/1:52,28:80:99:706,0,1543 1/1:0,33:33:96.28:1133,96,0 0/1:13,16:29:99:419,0,383 0/1:9,16:25:99:412,0,242 0/1:28,22:50:99:553,0,770 1/1:0,50:50:99:1675,141,0 0/1:29,17:47:99:430,0,863 0/1:16,15:31:99:451,0,425 0/1:53,38:91:99:1210,0,1545 1/1:0,34:34:99:1319,102,0 1/1:0,47:47:99:1844,141,0 0/1:37,27:64:99:807,0,1011 0/1:12,14:26:99:413,0,339 0/1:15,19:34:99:573,0,363 0/1:19,9:28:99:154,0,588 0/1:28,16:44:99:429,0,710 0/1:18,24:42:99:732,0,463 1/1:2,44:46:76.48:1513,76,0 1/1:0,32:32:87.25:1026,87,0 0/1:20,14:34:99:385,0,554 1/1:0,21:21:63.18:731,63,0 0/1:19,17:36:99:466,0,550 0/1:29,29:58:99:822,0,803 1/1:0,23:23:63.18:746,63,0 0/0:32,0:32:96.27:0,96,1100 1/1:0,22:22:63.19:750,63,0 0/1:18,16:34:99:408,0,515 0/1:18,15:33:99:418,0,508 11 44950703 . A G 2920.40 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.830;DP=4527;DS;Dels=0.00;FS=2.383;HRun=0;HaplotypeScore=2.3231;InbreedingCoeff=-0.0244;MQ=59.14;MQ0=0;MQRankSum=1.256;QD=9.93;ReadPosRankSum=-3.041 GT:AD:DP:GQ:PL 0/0:80,0:80:99:0,217,2592 0/0:103,0:103:99:0,280,3342 0/0:75,0:75:99:0,208,2508 0/0:214,0:214:99:0,560,6803 0/0:152,0:152:99:0,403,4879 0/0:151,0:152:99:0,391,4858 0/0:132,0:132:99:0,355,4375 0/0:142,0:142:99:0,376,4568 0/0:83,0:83:99:0,235,2792 0/0:68,1:70:99:0,168,1986 0/0:82,0:82:99:0,223,2670 0/0:76,0:76:99:0,214,2587 0/0:75,0:75:99:0,199,2441 0/0:94,0:95:99:0,250,2952 0/1:134,91:225:99:2131,0,3504 0/1:35,34:69:99:851,0,942 0/0:101,0:101:99:0,277,3314 0/0:79,0:79:99:0,232,2724 0/0:154,0:156:99:0,424,5163 0/0:179,0:179:99:0,478,5753 0/0:131,0:131:99:0,346,4205 0/0:86,0:86:99:0,229,2751 0/0:176,0:177:99:0,493,5980 0/0:136,0:137:99:0,352,4408 0/0:155,0:155:99:0,403,4982 0/0:126,0:126:99:0,334,4122 0/0:55,0:55:99:0,147,1759 0/0:73,0:73:99:0,196,2362 0/0:72,0:72:99:0,184,2210 0/0:68,0:68:99:0,184,2199 0/0:79,0:79:99:0,223,2653 0/0:131,0:132:99:0,364,4381 0/0:94,0:94:99:0,250,3020 0/0:82,0:82:99:0,229,2760 0/0:86,0:87:99:0,241,2859 0/0:84,0:84:99:0,229,2785 0/0:111,0:111:99:0,298,3554 0/0:80,0:80:99:0,202,2471 0/0:97,0:97:99:0,265,3183 0/0:103,0:103:99:0,271,3310 0/0:65,0:65:99:0,181,2143 0/0:93,0:93:99:0,253,3044 11 44956459 . G A 723.83 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.599;DP=2897;Dels=0.00;FS=7.967;HRun=1;HaplotypeScore=1.8800;InbreedingCoeff=-0.0120;MQ=59.31;MQ0=0;MQRankSum=-1.071;QD=12.06;ReadPosRankSum=-1.213 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,135,1475 0/0:36,0:36:96.24:0,96,1103 0/0:32,0:32:81.23:0,81,952 0/0:165,1:166:99:0,472,5574 0/0:155,0:155:99:0,442,5276 0/0:112,0:112:99:0,316,3837 0/0:105,0:105:99:0,301,3605 0/0:107,0:107:99:0,310,3675 0/0:53,0:54:99:0,141,1620 0/0:40,0:40:99:0,117,1299 0/0:44,0:45:99:0,123,1382 0/0:42,0:42:99:0,111,1245 0/0:30,0:30:72.18:0,72,822 0/0:33,0:33:90.25:0,90,1020 0/0:129,0:129:99:0,340,3857 0/1:32,28:60:99:770,0,852 0/0:38,0:38:99:0,108,1211 0/0:50,1:52:99:0,109,1558 0/0:92,0:92:99:0,244,2716 0/0:102,0:102:99:0,253,2824 0/0:90,0:90:99:0,247,2775 0/0:75,1:77:99:0,201,2224 0/0:187,1:188:99:0,487,6245 0/0:100,0:101:99:0,280,3332 0/0:111,0:112:99:0,313,3760 0/0:93,0:93:99:0,253,3067 0/0:27,0:27:78.20:0,78,872 0/0:47,0:47:99:0,135,1480 0/0:36,0:36:99:0,102,1175 0/0:55,0:55:99:0,150,1705 0/0:43,0:43:99:0,120,1318 0/0:81,0:81:99:0,214,2492 0/0:64,0:64:99:0,174,1990 0/0:47,0:47:99:0,135,1489 0/0:39,0:39:99:0,108,1189 0/0:46,0:46:99:0,126,1405 0/0:64,0:64:99:0,162,1884 0/0:56,0:56:99:0,150,1687 0/0:34,1:35:99:0,99,1093 0/0:39,0:39:99:0,108,1169 0/0:38,0:38:99:0,102,1161 0/0:42,0:42:99:0,123,1357 11 45935384 . A G 47424.88 . AC=73;AF=0.869;AN=84;BaseQRankSum=0.587;DP=1751;Dels=0.00;FS=1.404;HRun=0;HaplotypeScore=1.0302;InbreedingCoeff=0.0585;MQ=58.37;MQ0=0;MQRankSum=-0.188;QD=27.57;ReadPosRankSum=-1.417 GT:AD:DP:GQ:PL 1/1:0,30:30:75.21:890,75,0 0/1:19,15:34:99:386,0,524 0/1:26,8:34:99:150,0,772 1/1:0,94:94:99:3227,259,0 1/1:0,83:84:99:3046,238,0 1/1:0,54:54:99:1990,156,0 1/1:0,36:36:99:1310,102,0 1/1:0,44:44:99:1653,129,0 1/1:0,37:37:99:1190,102,0 1/1:0,32:32:96.26:1101,96,0 1/1:0,27:27:69.19:805,69,0 0/1:9,15:24:99:452,0,221 0/1:12,15:28:99:368,0,341 1/1:0,32:33:84.23:984,84,0 1/1:0,95:95:99:2735,235,0 1/1:0,23:23:63.14:704,63,0 1/1:0,17:17:48.14:557,48,0 1/1:0,22:22:54.14:656,54,0 1/1:0,46:46:99:1413,123,0 1/1:0,58:58:99:1853,159,0 0/1:39,31:70:99:722,0,1105 0/0:29,1:31:44.23:0,44,890 0/1:64,34:98:99:998,0,1904 1/1:0,31:31:87.27:1096,87,0 1/1:0,66:66:99:2294,184,0 1/1:0,51:51:99:1820,144,0 1/1:0,31:31:81.22:952,81,0 1/1:0,29:29:69.18:812,69,0 1/1:0,28:28:78.21:894,78,0 0/1:14,15:29:99:380,0,406 0/1:14,10:24:99:278,0,384 1/1:0,47:47:99:1439,120,0 0/1:29,20:49:99:541,0,771 1/1:0,37:37:99:1211,99,0 1/1:0,38:38:99:1213,102,0 1/1:0,40:40:99:1250,108,0 1/1:0,57:58:99:1688,144,0 1/1:0,33:33:93.25:1066,93,0 1/1:0,27:27:75.20:865,75,0 1/1:0,25:25:66.17:744,66,0 1/1:0,28:29:78.20:900,78,0 1/1:0,28:28:69.18:791,69,0 11 45935439 . T C 43.21 . AC=7;AF=0.083;AN=84;BaseQRankSum=-9.533;DP=862;Dels=0.00;FS=121.056;HRun=3;HaplotypeScore=0.5332;InbreedingCoeff=-0.1252;MQ=57.63;MQ0=1;MQRankSum=1.257;QD=0.29;ReadPosRankSum=-6.910 GT:AD:DP:GQ:PL 0/0:16,3:19:42.12:0,42,496 0/0:6,5:11:9.03:0,9,105 0/0:6,3:9:18.05:0,18,215 0/0:30,14:44:87.25:0,87,1023 0/0:29,19:48:46.89:0,47,914 0/0:21,5:26:51.16:0,51,632 0/0:16,3:19:39.11:0,39,463 0/0:14,9:23:3.60:0,4,359 0/1:16,6:22:16.76:17,0,429 0/0:9,7:17:24.07:0,24,287 0/0:13,8:21:13.39:0,13,384 0/1:8,8:16:23.30:23,0,215 0/0:6,8:14:15.01:0,15,159 0/0:11,2:13:33.10:0,33,394 0/1:29,24:53:33.09:33,0,768 0/0:11,5:16:33.08:0,33,381 0/1:4,2:6:14.58:15,0,133 0/0:4,3:7:9.03:0,9,107 0/0:15,9:24:9.41:0,9,366 0/0:16,11:27:36.05:0,36,382 0/1:13,11:24:21.25:21,0,300 0/0:12,10:22:27.05:0,27,299 0/0:40,10:51:78.31:0,78,1291 0/1:8,7:15:11.18:11,0,226 0/0:21,9:30:54.16:0,54,662 0/0:13,8:21:18.40:0,18,428 0/0:8,10:18:1.38:0,1,252 0/0:7,4:11:0.86:7,0,185 0/0:14,6:20:33.07:0,33,373 0/0:13,8:21:2.50:0,2,325 0/0:10,4:14:24.07:0,24,285 0/0:13,7:20:33.10:0,33,405 0/0:11,10:21:9.40:0,9,343 0/0:7,6:14:21.06:0,21,244 0/0:8,5:13:18.04:0,18,202 0/0:11,3:15:30.09:0,30,351 0/1:9,4:13:29.05:29,0,292 0/0:9,8:17:24.07:0,24,294 0/0:10,8:18:24.07:0,24,285 0/0:11,8:19:30.09:0,30,357 0/0:11,5:16:33.09:0,33,381 0/0:9,5:14:24.05:0,24,273 11 45937058 . T C 707.80 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.958;DP=2337;Dels=0.00;FS=9.250;HRun=0;HaplotypeScore=1.3621;InbreedingCoeff=-0.0244;MQ=59.34;MQ0=0;MQRankSum=-0.779;QD=12.42;ReadPosRankSum=-2.294 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,99,1167 0/0:43,0:43:99:0,117,1390 0/0:35,0:35:96.28:0,96,1123 0/0:164,0:164:99:0,427,5075 0/0:124,0:124:99:0,328,3973 0/0:88,0:88:99:0,226,2818 0/0:71,0:71:99:0,193,2279 0/0:86,0:86:99:0,229,2758 0/1:13,12:25:99:339,0,307 0/0:32,0:32:93.25:0,93,1048 0/1:17,15:32:99:431,0,448 0/0:34,0:34:93.27:0,93,1095 0/0:30,0:30:90.20:0,90,1006 0/0:35,0:35:96.25:0,96,1105 0/0:135,0:135:99:0,364,4317 0/0:38,0:38:99:0,114,1299 0/0:46,0:46:99:0,117,1414 0/0:31,0:31:84.26:0,84,1022 0/0:61,0:61:99:0,165,1968 0/0:65,0:65:99:0,178,2116 0/0:62,0:62:99:0,175,2075 0/0:33,0:33:78.22:0,78,939 0/0:142,0:142:99:0,367,4423 0/0:58,0:58:99:0,135,1671 0/0:74,0:74:99:0,199,2406 0/0:57,0:57:99:0,159,1867 0/0:41,0:41:99:0,111,1325 0/0:29,0:29:87.25:0,87,1016 0/0:25,0:25:69.20:0,69,813 0/0:35,0:35:99:0,102,1207 0/0:32,0:32:90.25:0,90,1057 0/0:80,0:80:99:0,217,2620 0/0:65,0:65:99:0,168,2004 0/0:39,0:39:99:0,108,1283 0/0:42,0:42:99:0,117,1371 0/0:44,0:44:99:0,120,1430 0/0:81,0:82:99:0,223,2659 0/0:50,0:50:99:0,135,1591 0/0:46,0:46:99:0,129,1520 0/0:31,0:31:90.26:0,90,1055 0/0:27,0:27:81.20:0,81,916 0/0:32,0:32:93.28:0,93,1107 11 45950259 . C T 662.56 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.443;DP=3379;Dels=0.00;FS=1.694;HRun=0;HaplotypeScore=3.1623;InbreedingCoeff=-0.0120;MQ=58.67;MQ0=0;MQRankSum=2.066;QD=12.99;ReadPosRankSum=-0.485 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,159,1868 0/0:57,0:58:99:0,141,1655 0/1:27,24:51:99:709,0,692 0/0:182,0:182:99:0,469,5823 0/0:145,0:145:99:0,397,4934 0/0:99,0:99:99:0,271,3381 0/0:82,0:82:99:0,214,2623 0/0:87,0:88:99:0,220,2747 0/0:52,0:52:99:0,141,1641 0/0:66,0:67:99:0,180,2135 0/0:50,0:50:99:0,135,1604 0/0:59,0:59:99:0,156,1855 0/0:55,0:55:99:0,144,1665 0/0:50,0:51:99:0,132,1607 0/0:211,1:213:99:0,544,6462 0/0:77,0:77:99:0,202,2346 0/0:52,0:52:99:0,135,1561 0/0:49,0:49:99:0,120,1410 0/0:99,0:100:99:0,274,3201 0/0:111,0:111:99:0,307,3650 0/0:101,0:104:99:0,268,3163 0/0:86,0:87:99:0,223,2698 0/0:177,0:177:99:0,454,5724 0/0:71,0:71:99:0,187,2325 0/0:101,0:101:99:0,259,3274 0/0:77,0:77:99:0,202,2481 0/0:40,0:40:99:0,120,1418 0/0:50,0:50:99:0,123,1499 0/0:50,0:50:99:0,129,1551 0/0:54,0:54:99:0,144,1715 0/0:73,0:73:99:0,198,2295 0/0:128,0:128:99:0,310,3769 0/0:83,0:84:99:0,220,2607 0/0:54,0:54:99:0,141,1682 0/0:63,0:63:99:0,162,1963 0/0:60,0:60:99:0,162,1897 0/0:115,0:116:99:0,316,3693 0/0:64,0:64:99:0,159,1877 0/0:62,0:62:99:0,177,2003 0/0:50,0:50:99:0,138,1623 0/0:54,0:54:99:0,141,1640 0/0:60,0:60:99:0,156,1839 11 45957292 . TA T 32.03 . AC=33;AF=0.393;AN=84;BaseQRankSum=5.568;DP=797;FS=0.000;HRun=23;HaplotypeScore=46.4527;InbreedingCoeff=0.2629;MQ=55.90;MQ0=0;MQRankSum=4.849;QD=0.08;ReadPosRankSum=5.465 GT:AD:DP:GQ:PL 1/1:15,1:16:2.13:6,2,0 1/1:12,0:13:1.15:5,1,0 0/0:14,0:14:5.20:0,5,23 1/1:32,3:35:8:33,8,0 0/0:36,0:35:1.18:0,1,13 0/1:32,1:28:11.26:12,0,11 1/1:41,0:40:1.28:8,1,0 0/0:38,1:37:0.94:0,1,2 0/0:18,0:18:0.94:0,1,2 0/0:13,0:13:0.94:0,1,3 0/0:16,0:16:5.33:0,5,27 0/0:15,0:16:0.47:0,0,1 0/0:13,0:14:0.47:0,0,1 0/0:14,0:13:0.94:0,1,2 0/0:35,0:34:0.31:0,0,17 1/1:11,1:12:0.95:4,1,0 0/0:16,0:16:0.47:0,0,1 0/0:15,0:15:3.95:0,4,13 0/0:13,0:13:0.47:0,0,1 0/1:17,0:17:0.51:1,0,15 0/1:17,0:17:0:0,0,1 0/0:7,0:7:0.80:0,1,26 0/1:31,1:35:5.40:5,0,13 0/1:24,0:23:4.81:5,0,45 0/1:32,0:28:0.39:2,0,0 0/0:29,0:27:2.48:0,2,35 0/0:12,1:13:0.47:0,0,1 0/0:8,1:9:0.94:0,1,2 0/0:13,1:14:3.84:0,4,21 1/1:13,0:14:2.05:6,2,0 0/1:14,1:14:0:0,0,0 0/0:8,0:8:2.96:0,3,19 1/1:10,0:10:1.75:0,0,0 1/1:12,1:14:4.38:13,4,0 1/1:9,0:9:2.37:8,2,0 1/1:10,0:11:4.12:12,4,0 0/0:12,0:12:3.43:0,3,19 1/1:16,0:17:1.73:5,2,0 1/1:16,0:17:4.83:20,5,0 1/1:16,1:17:1.74:0,0,0 0/0:13,0:13:0.94:0,1,2 0/0:23,0:23:0.89:0,1,2 11 45975130 . C T 1385.69 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.616;DP=2098;Dels=0.00;FS=1.770;HRun=0;HaplotypeScore=1.0033;InbreedingCoeff=-0.0244;MQ=59.45;MQ0=0;MQRankSum=0.328;QD=10.26;ReadPosRankSum=0.633 GT:AD:DP:GQ:PL 0/0:34,0:34:87.21:0,87,991 0/0:36,1:37:70.68:0,71,1074 0/0:18,0:18:51.12:0,51,584 0/0:100,1:101:99:0,223,3139 0/0:110,0:110:99:0,295,3659 0/0:85,0:85:99:0,214,2656 0/0:65,0:65:99:0,166,2070 0/0:71,0:71:99:0,175,2197 0/0:38,0:38:99:0,99,1136 0/0:33,0:33:93.25:0,93,1046 0/0:34,0:34:93.25:0,93,1059 0/0:31,0:31:78.19:0,78,877 0/0:31,0:31:84.22:0,84,938 0/0:34,0:34:90.25:0,90,1040 0/0:125,0:125:99:0,298,3497 0/0:28,0:28:69.19:0,69,808 0/0:42,0:42:99:0,114,1268 0/0:33,0:33:81.22:0,81,953 0/0:51,0:52:99:0,126,1489 0/0:38,0:38:99:0,102,1185 0/0:51,0:51:99:0,132,1535 0/0:23,1:24:24.02:0,24,626 0/0:154,0:155:99:0,364,4725 0/1:48,27:75:99:660,0,1278 0/0:83,0:83:99:0,196,2473 0/1:30,30:60:99:788,0,833 0/0:34,0:34:96.26:0,96,1088 0/0:35,0:35:96.23:0,96,1054 0/0:26,0:26:75.20:0,75,847 0/0:31,0:31:84.23:0,84,966 0/0:39,0:39:99:0,99,1153 0/0:71,0:73:99:0,174,2061 0/0:39,0:39:84.24:0,84,1046 0/0:27,0:27:75.20:0,75,846 0/0:43,0:43:99:0,108,1262 0/0:46,0:46:99:0,117,1341 0/0:36,0:37:90.22:0,90,997 0/0:35,0:35:96.21:0,96,1045 0/0:33,0:33:81.23:0,81,964 0/0:26,0:26:63.17:0,63,723 0/0:43,0:43:99:0,108,1238 0/0:43,0:43:99:0,105,1201 11 45986887 . G T 798.59 . AC=21;AF=0.250;AN=84;BaseQRankSum=-11.550;DP=1151;Dels=0.00;FS=459.250;HRun=2;HaplotypeScore=0.8823;InbreedingCoeff=-0.3559;MQ=58.56;MQ0=0;MQRankSum=1.710;QD=1.33;ReadPosRankSum=-9.318 GT:AD:DP:GQ:PL 0/0:10,15:25:20.72:0,21,222 0/1:12,9:21:22.02:22,0,325 0/0:12,12:24:12.42:0,12,395 0/1:22,22:44:91.56:92,0,524 0/0:22,15:37:2.60:1,0,693 0/1:19,16:36:10.71:11,0,572 0/0:12,11:23:33.11:0,33,436 0/1:19,15:34:1.45:1,0,513 0/0:11,9:20:2.67:0,3,366 0/1:7,16:23:97.88:98,0,154 0/0:10,5:15:21.06:0,21,254 0/0:14,11:25:42.13:0,42,524 0/0:17,10:27:9.62:0,10,427 0/1:11,11:22:76.28:76,0,307 0/1:39,29:68:43.77:44,0,1126 0/1:15,11:26:27.94:28,0,340 0/0:19,10:29:7.78:0,8,448 0/1:9,13:22:9.36:9,0,237 0/1:12,8:20:86.68:87,0,320 0/0:28,20:48:43.17:0,43,770 0/1:25,15:40:2.17:2,0,575 0/0:12,11:23:14.41:0,14,405 0/1:16,23:39:66.94:67,0,535 0/0:13,12:25:39.12:0,39,501 0/0:22,16:38:56.82:0,57,685 0/0:14,19:33:6.24:0,6,435 0/1:9,15:24:3.51:4,0,268 0/0:10,10:20:3.67:0,4,135 0/1:12,12:24:51.55:52,0,326 0/1:13,9:22:3.35:3,0,294 0/0:11,10:21:24.06:0,24,277 0/0:14,15:29:4.54:0,5,351 0/0:9,11:20:8.39:0,8,298 0/1:15,10:25:24.38:24,0,329 0/0:10,12:22:2.72:1,0,261 0/1:9,9:18:5.17:5,0,285 0/1:12,8:20:99:126,0,387 0/1:10,15:25:99:118,0,264 0/1:13,16:29:65.17:65,0,398 0/0:13,9:22:33.09:0,33,389 0/1:9,10:19:14.19:14,0,192 0/0:12,11:24:4.40:0,4,305 11 45987091 . A T 329.77 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.817;DP=1298;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.6824;InbreedingCoeff=-0.0120;MQ=58.84;MQ0=0;MQRankSum=0.145;QD=17.36;ReadPosRankSum=0.485 GT:AD:DP:GQ:PL 0/0:25,0:25:69.21:0,69,838 0/0:23,0:23:63.19:0,63,779 0/0:20,0:20:57.18:0,57,720 0/0:65,0:65:99:0,184,2252 0/0:50,0:50:99:0,141,1802 0/0:36,0:36:99:0,105,1337 0/0:33,0:33:90.29:0,90,1165 0/0:28,0:28:84.26:0,84,1061 0/0:20,0:20:54.17:0,54,690 0/0:22,0:22:63.19:0,63,765 0/0:15,0:15:42.13:0,42,518 0/0:27,0:27:78.23:0,78,956 0/0:18,0:18:48.15:0,48,595 0/1:7,12:19:99:376,0,126 0/0:82,0:82:99:0,229,2792 0/0:20,0:20:51.15:0,51,628 0/0:20,0:20:54.16:0,54,658 0/0:21,0:21:60.18:0,60,728 0/0:36,0:36:96.28:0,96,1165 0/0:42,0:42:99:0,114,1385 0/0:42,0:43:99:0,111,1393 0/0:34,0:34:93.27:0,93,1135 0/0:46,0:46:99:0,123,1564 0/0:19,0:20:57.16:0,57,695 0/0:35,0:35:96.30:0,96,1208 0/0:37,0:38:99:0,99,1199 0/0:23,0:23:63.20:0,63,788 0/0:29,0:29:81.25:0,81,1006 0/0:29,0:29:75.23:0,75,934 0/0:17,0:17:48.10:0,48,571 0/0:23,0:23:69.21:0,69,854 0/0:39,0:39:99:0,105,1298 0/0:35,0:35:96.30:0,96,1187 0/0:24,0:24:63.20:0,63,793 0/0:25,0:25:69.22:0,69,866 0/0:16,0:16:45.14:0,45,563 0/0:43,0:43:99:0,123,1468 0/0:35,0:35:96.30:0,96,1197 0/0:29,0:29:87.25:0,87,1042 0/0:29,0:29:84.24:0,84,1024 0/0:34,0:34:96.30:0,96,1182 0/0:30,0:30:84.25:0,84,1029 11 46456444 . G A 552.41 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.982;DP=1506;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.5722;InbreedingCoeff=-0.0244;MQ=59.26;MQ0=0;MQRankSum=-0.358;QD=10.62;ReadPosRankSum=0.598 GT:AD:DP:GQ:PL 0/0:33,0:33:84.27:0,84,1105 0/0:34,0:34:90.29:0,90,1174 0/0:26,0:26:75.24:0,75,972 0/0:70,0:70:99:0,166,2281 0/0:58,0:58:99:0,147,2024 0/0:38,0:38:93.29:0,93,1246 0/0:41,0:41:99:0,99,1398 0/0:43,0:43:99:0,102,1417 0/0:33,0:33:93.30:0,93,1209 0/0:21,0:21:57.17:0,57,727 0/0:26,0:26:78.24:0,78,961 0/0:28,0:28:81.26:0,81,1025 0/0:19,0:19:54.17:0,54,685 0/0:27,0:27:72.22:0,72,918 0/0:105,0:105:99:0,265,3459 0/1:10,10:20:99:308,0,324 0/0:37,0:37:93.30:0,93,1217 0/0:26,0:26:75.24:0,75,967 0/0:42,0:42:99:0,108,1419 0/0:50,0:50:99:0,132,1693 0/0:52,0:52:99:0,135,1749 0/0:28,0:28:78.25:0,78,996 0/0:69,0:69:99:0,172,2371 0/0:25,0:25:69.23:0,69,930 0/0:33,0:33:78.22:0,78,1045 0/0:29,0:29:69.20:0,69,929 0/0:18,0:18:54.17:0,54,687 0/0:28,0:28:84.25:0,84,1042 0/0:33,0:34:93.28:0,93,1178 0/0:33,0:33:84.25:0,84,1079 0/0:35,0:35:99:0,99,1275 0/0:48,0:48:99:0,126,1601 0/0:30,0:30:81.25:0,81,1030 0/0:29,0:29:84.27:0,84,1065 0/0:23,0:24:63.20:0,63,806 0/0:31,0:31:93.30:0,93,1185 0/0:47,0:48:99:0,126,1603 0/0:37,0:37:96.31:0,96,1242 0/0:26,0:26:75.23:0,75,951 0/0:22,0:22:57.18:0,57,747 0/0:18,0:18:51.16:0,51,634 0/1:21,11:32:99:307,0,681 11 46671800 . A G 2206.44 . AC=2;AF=0.024;AN=84;BaseQRankSum=10.382;DP=4139;DS;Dels=0.00;FS=8.780;HRun=0;HaplotypeScore=1.4185;InbreedingCoeff=-0.0244;MQ=59.36;MQ0=0;MQRankSum=-0.788;QD=16.34;ReadPosRankSum=-0.399 GT:AD:DP:GQ:PL 0/0:74,0:74:99:0,211,2427 0/1:39,35:74:99:1053,0,1028 0/1:24,37:61:99:1216,0,595 0/0:208,0:208:99:0,617,7126 0/0:173,0:173:99:0,499,5815 0/0:150,0:150:99:0,430,5230 0/0:141,0:141:99:0,418,4896 0/0:137,0:137:99:0,391,4572 0/0:72,0:72:99:0,214,2453 0/0:80,0:80:99:0,223,2537 0/0:75,0:75:99:0,208,2390 0/0:75,0:75:99:0,220,2536 0/0:68,1:69:99:0,196,2246 0/0:75,0:75:99:0,214,2494 0/0:212,0:212:99:0,590,6848 0/0:62,0:62:99:0,175,2059 0/0:82,0:82:99:0,244,2802 0/0:81,0:81:99:0,235,2735 0/0:103,0:104:99:0,301,3552 0/0:95,0:95:99:0,259,3080 0/0:110,1:111:99:0,279,3560 0/0:67,0:67:99:0,187,2134 0/0:210,0:210:99:0,617,7220 0/0:138,0:138:99:0,397,4687 0/0:170,0:170:99:0,478,5613 0/0:144,0:144:99:0,427,5045 0/0:65,0:65:99:0,190,2211 0/0:68,0:68:99:0,190,2201 0/0:65,0:65:99:0,193,2213 0/0:77,0:77:99:0,229,2692 0/0:76,0:76:99:0,214,2518 0/0:104,0:105:99:0,289,3407 0/0:55,0:55:99:0,165,1902 0/0:90,0:90:99:0,262,3022 0/0:76,0:76:99:0,220,2534 0/0:77,0:77:99:0,232,2680 0/0:81,0:82:99:0,238,2814 0/0:67,0:67:99:0,202,2342 0/0:69,0:69:99:0,205,2366 0/0:85,0:85:99:0,253,2946 0/0:60,0:60:99:0,177,2028 0/0:82,0:82:99:0,235,2745 11 46671814 . A C 34.56 . AC=2;AF=0.024;AN=84;BaseQRankSum=-34.699;DP=5327;DS;Dels=0.00;FS=2142.347;HRun=2;HaplotypeScore=2.1972;InbreedingCoeff=-0.0251;MQ=59.45;MQ0=0;MQRankSum=-0.671;QD=0.16;ReadPosRankSum=-23.870 GT:AD:DP:GQ:PL 0/0:73,30:103:99:0,126,2382 0/1:70,36:106:29.04:29,0,2262 0/0:61,22:84:99:0,118,2069 0/0:194,56:250:99:0,379,6858 0/0:155,47:202:99:0,250,5440 0/0:161,55:216:99:0,338,5610 0/0:132,46:179:99:0,365,4757 0/0:138,50:188:99:0,287,4787 0/0:67,23:90:99:0,137,2185 0/0:75,23:98:99:0,219,2565 0/0:72,32:104:99:0,140,2363 0/0:69,33:102:23.84:0,24,2282 0/0:73,17:90:99:0,137,2376 0/0:69,23:92:99:0,129,2251 0/0:160,88:250:12.24:0,12,4841 0/0:57,24:81:64.03:0,64,1921 0/0:70,29:99:99:0,150,2346 0/0:72,33:105:99:0,157,2447 0/0:82,31:113:99:0,115,2727 0/0:89,31:120:99:0,194,2972 0/0:101,44:145:99:0,153,3309 0/0:56,23:79:99:0,117,1868 0/0:188,61:250:99:0,417,6594 0/0:132,51:183:99:0,311,4696 0/0:182,53:235:99:0,415,6291 0/0:146,46:192:99:0,430,5268 0/0:70,22:92:72.02:0,72,2323 0/0:68,25:94:99:0,134,2178 0/0:50,26:76:99:0,129,1782 0/0:75,18:93:99:0,139,2599 0/0:69,38:108:62.83:0,63,2233 0/0:86,46:132:99:0,190,2917 0/0:53,32:85:99:0,101,1741 0/0:77,22:100:99:0,106,2585 0/0:74,32:106:99:0,102,2459 0/0:69,29:98:99:0,124,2281 0/0:80,28:108:99:0,115,2448 0/1:65,39:104:67.67:68,0,1984 0/0:63,32:96:28.38:0,28,2002 0/0:65,29:94:78.19:0,78,2139 0/0:54,21:76:99:0,137,1905 0/0:80,29:109:85.64:0,86,2686 11 46702920 . T C 154079.99 . AC=84;AF=1.000;AN=84;DP=4444;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.1954;InbreedingCoeff=0.0000;MQ=59.28;MQ0=0;QD=34.67 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2779,214,0 1/1:0,75:75:99:2459,193,0 1/1:0,79:79:99:2703,211,0 1/1:0,227:228:99:7832,575,0 1/1:0,175:175:99:6350,463,0 1/1:0,163:163:99:5630,412,0 1/1:0,134:134:99:4818,355,0 1/1:0,147:147:99:5204,379,0 1/1:0,80:80:99:2775,217,0 1/1:0,79:79:99:2693,211,0 1/1:0,84:84:99:2986,232,0 1/1:0,82:82:99:2833,220,0 1/1:0,82:82:99:2735,211,0 1/1:0,78:78:99:2769,220,0 1/1:0,219:219:99:7661,596,0 1/1:0,71:72:99:2444,190,0 1/1:0,105:105:99:3494,271,0 1/1:0,80:80:99:2940,229,0 1/1:0,101:101:99:3443,268,0 1/1:1,109:110:99:3587,274,0 1/1:0,117:117:99:3985,310,0 1/1:0,74:74:99:2602,202,0 1/1:0,208:208:99:7141,515,0 1/1:0,146:146:99:4935,364,0 1/1:0,157:157:99:5401,394,0 1/1:0,131:131:99:4654,340,0 1/1:0,68:68:99:2406,190,0 1/1:0,68:68:99:2422,190,0 1/1:0,71:71:99:2536,199,0 1/1:0,92:92:99:3332,265,0 1/1:0,77:77:99:2760,217,0 1/1:0,90:90:99:2924,226,0 1/1:0,89:90:99:3072,238,0 1/1:0,90:90:99:3132,247,0 1/1:1,70:71:99:2413,187,0 1/1:0,96:96:99:3358,262,0 1/1:0,92:93:99:3106,241,0 1/1:0,90:90:99:3114,244,0 1/1:0,101:101:99:3515,277,0 1/1:0,90:90:99:3170,250,0 1/1:0,72:72:99:2598,205,0 1/1:0,94:94:99:3365,262,0 11 46745003 . C T 2138.14 . AC=4;AF=0.048;AN=84;BaseQRankSum=7.257;DP=2044;Dels=0.00;FS=7.337;HRun=0;HaplotypeScore=3.1679;InbreedingCoeff=-0.0500;MQ=59.13;MQ0=0;MQRankSum=0.862;QD=12.80;ReadPosRankSum=1.346 GT:AD:DP:GQ:PL 0/0:42,0:43:99:0,117,1302 0/0:37,1:38:68.28:0,68,1094 0/0:35,0:35:96.25:0,96,1061 0/0:74,0:74:99:0,202,2384 0/0:65,0:65:99:0,177,2113 0/0:41,0:41:99:0,111,1354 0/0:46,0:46:99:0,129,1552 0/0:39,0:39:99:0,117,1358 0/0:41,0:41:99:0,111,1240 0/0:37,0:37:93.24:0,93,1050 0/0:37,0:37:99:0,99,1103 0/0:38,0:38:99:0,102,1133 0/1:28,20:48:99:542,0,670 0/0:50,0:50:99:0,141,1567 0/0:176,0:176:99:0,457,5513 0/0:48,0:48:99:0,138,1486 0/0:33,0:33:90.26:0,90,1056 0/0:38,0:38:99:0,99,1084 0/0:53,0:53:99:0,144,1629 0/0:77,0:77:99:0,199,2258 0/0:68,0:68:99:0,180,2008 0/0:47,0:47:99:0,126,1399 0/0:64,0:64:99:0,184,2201 0/1:17,15:32:99:398,0,472 0/1:24,21:45:99:653,0,618 0/0:31,0:31:84.23:0,84,1000 0/0:42,0:42:99:0,123,1302 0/0:39,0:39:99:0,108,1171 0/0:30,0:30:81.19:0,81,878 0/0:41,0:41:99:0,114,1237 0/0:44,0:44:99:0,123,1356 0/0:77,0:77:99:0,208,2374 0/0:49,0:49:99:0,129,1470 0/0:42,0:42:99:0,114,1263 0/0:38,0:38:99:0,105,1157 0/1:19,23:42:99:633,0,429 0/0:52,0:52:99:0,141,1580 0/0:41,0:41:99:0,105,1208 0/0:44,0:44:99:0,123,1359 0/0:42,0:42:99:0,120,1330 0/0:46,1:47:95.36:0,95,1393 0/0:30,0:30:84.20:0,84,918 11 46745004 . G A 2578.26 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.700;DP=1983;Dels=0.00;FS=11.034;HRun=0;HaplotypeScore=3.1650;InbreedingCoeff=-0.0244;MQ=59.13;MQ0=0;MQRankSum=-0.523;QD=12.52;ReadPosRankSum=2.592 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,102,1260 0/0:38,0:38:99:0,99,1226 0/0:33,0:33:93.26:0,93,1120 0/0:74,0:74:99:0,196,2543 0/0:64,1:65:99:0,169,2242 0/0:42,0:42:99:0,111,1472 0/0:44,0:44:99:0,120,1580 0/0:37,0:37:99:0,111,1405 0/0:41,0:41:99:0,117,1452 0/0:33,0:33:87.27:0,87,1080 0/0:34,0:34:96.27:0,96,1166 0/0:37,0:37:99:0,99,1206 0/0:46,0:46:99:0,126,1578 0/0:50,0:50:99:0,141,1757 0/1:89,84:173:99:2328,0,2378 0/0:44,0:44:99:0,123,1478 0/1:22,11:33:99:313,0,641 0/0:36,0:36:99:0,102,1237 0/0:50,0:50:99:0,138,1685 0/0:75,0:75:99:0,196,2434 0/0:67,0:68:99:0,178,2180 0/0:44,0:44:99:0,117,1492 0/0:60,0:62:99:0,175,2292 0/0:29,0:29:84.25:0,84,1093 0/0:43,0:44:99:0,123,1624 0/0:30,0:30:81.23:0,81,1035 0/0:39,0:39:99:0,114,1367 0/0:39,0:39:99:0,114,1357 0/0:28,0:28:75.20:0,75,887 0/0:40,0:40:99:0,108,1300 0/0:43,0:43:99:0,123,1529 0/0:73,0:73:99:0,196,2373 0/0:49,0:49:99:0,129,1622 0/0:41,1:42:80.36:0,80,1366 0/0:36,0:36:96.29:0,96,1176 0/0:41,0:41:99:0,111,1377 0/0:53,0:53:99:0,138,1676 0/0:40,0:40:99:0,102,1293 0/0:41,0:41:99:0,111,1390 0/0:40,0:40:99:0,114,1346 0/0:46,0:46:99:0,123,1522 0/0:30,0:30:81.25:0,81,997 11 46748178 . T G 998.02 . AC=20;AF=0.238;AN=84;BaseQRankSum=-21.006;DP=2275;Dels=0.00;FS=2094.121;HRun=2;HaplotypeScore=1.8285;InbreedingCoeff=-0.3282;MQ=58.79;MQ0=0;MQRankSum=1.836;QD=0.89;ReadPosRankSum=-23.451 GT:AD:DP:GQ:PL 0/0:23,5:28:35.59:0,36,718 0/1:27,11:38:31.67:32,0,812 0/0:26,6:32:7.36:0,7,836 0/0:77,27:104:82.29:0,82,2484 0/1:62,39:101:99:159,0,1751 0/1:54,22:76:99:132,0,1702 0/0:51,20:71:37.02:0,37,1560 0/0:55,23:78:41.50:0,42,1679 0/0:36,7:43:99:0,105,1215 0/1:29,15:44:67.33:67,0,844 0/1:27,13:40:17.76:18,0,761 0/0:33,5:38:38.09:0,38,1022 0/0:28,8:36:34.82:0,35,834 0/1:21,15:36:28.27:28,0,628 0/1:87,26:113:13.38:13,0,2430 0/1:29,13:42:81.14:81,0,844 0/0:31,8:39:23.68:0,24,987 0/1:29,8:37:6.68:7,0,837 0/1:32,14:46:11.28:11,0,968 0/0:79,20:99:99:0,157,2579 0/0:42,18:60:26.22:0,26,1211 0/1:27,15:42:99:104,0,698 0/1:92,44:136:64.15:64,0,2786 0/0:42,16:58:13.49:0,13,1251 0/0:55,20:75:99:0,100,1685 0/1:44,11:55:23.84:24,0,1333 0/0:26,5:31:14.37:0,14,831 0/0:36,14:50:29.88:0,30,1148 0/0:24,3:27:72.05:0,72,849 0/0:31,12:43:24.31:0,24,922 0/1:26,9:35:30.10:30,0,828 0/1:57,24:81:99:208,0,1656 0/1:47,23:70:66.47:66,0,1382 0/1:20,8:28:29.45:29,0,580 0/1:25,11:36:26.44:26,0,754 0/1:22,8:30:57.21:57,0,668 0/0:50,14:64:2.27:2,0,1407 0/0:29,12:41:79.78:0,80,922 0/0:36,16:52:31.25:0,31,1141 0/0:34,7:41:11.39:0,11,1057 0/1:29,11:40:3.57:4,0,810 0/0:31,8:39:0.44:0,0,871 11 46785058 . A G 709.73 . AC=1;AF=0.012;AN=84;BaseQRankSum=5.778;DP=1827;Dels=0.00;FS=5.733;HRun=0;HaplotypeScore=0.6802;InbreedingCoeff=-0.0120;MQ=59.24;MQ0=0;MQRankSum=-0.589;QD=16.51;ReadPosRankSum=0.521 GT:AD:DP:GQ:PL 0/1:17,26:43:99:756,0,477 0/0:31,0:31:87.24:0,87,1022 0/0:38,0:38:99:0,111,1311 0/0:64,0:64:99:0,174,2077 0/0:60,0:60:99:0,172,2075 0/0:59,0:59:99:0,147,1876 0/0:63,0:63:99:0,165,2045 0/0:53,0:53:99:0,138,1710 0/0:37,0:37:99:0,102,1211 0/0:29,0:29:84.25:0,84,983 0/0:36,0:36:99:0,105,1235 0/0:37,0:37:99:0,108,1267 0/0:26,0:26:66.19:0,66,793 0/0:38,0:38:99:0,108,1278 0/0:103,0:103:99:0,274,3261 0/0:28,0:28:78.22:0,78,922 0/0:36,0:36:99:0,99,1197 0/0:30,0:30:90.27:0,90,1057 0/0:53,0:53:99:0,144,1708 0/0:45,0:45:99:0,117,1413 0/0:55,0:55:99:0,147,1755 0/0:34,0:34:87.26:0,87,1043 0/0:88,0:88:99:0,223,2743 0/0:37,0:37:99:0,99,1201 0/0:50,0:50:99:0,129,1607 0/0:61,0:61:99:0,159,1925 0/0:36,0:36:96.28:0,96,1149 0/0:39,0:39:99:0,105,1246 0/0:32,0:32:90.26:0,90,1071 0/0:37,0:37:99:0,102,1208 0/0:30,0:30:90.25:0,90,1044 0/0:50,0:50:99:0,138,1654 0/0:37,0:37:99:0,102,1233 0/0:34,0:34:99:0,102,1194 0/0:40,0:40:99:0,108,1300 0/0:29,0:29:87.26:0,87,1025 0/0:42,0:42:99:0,120,1428 0/0:43,0:43:99:0,126,1499 0/0:31,0:31:93.28:0,93,1102 0/0:38,0:38:99:0,105,1240 0/0:32,0:32:78.23:0,78,943 0/0:43,0:43:99:0,126,1490 11 46886077 . A T 1601.20 . AC=1;AF=0.012;AN=84;BaseQRankSum=-7.624;DP=5256;DS;Dels=0.00;FS=4.738;HRun=0;HaplotypeScore=2.4100;InbreedingCoeff=-0.0120;MQ=59.56;MQ0=1;MQRankSum=1.484;QD=12.81;ReadPosRankSum=0.178 GT:AD:DP:GQ:PL 0/0:123,0:123:99:0,346,4330 0/0:106,0:106:99:0,304,3798 0/0:110,0:110:99:0,301,3796 0/0:127,0:127:99:0,361,4643 0/0:138,0:139:99:0,397,5153 0/0:123,0:123:99:0,343,4531 0/0:113,0:113:99:0,313,4128 0/0:92,0:92:99:0,262,3406 0/0:116,0:116:99:0,328,4138 0/0:120,0:120:99:0,331,4109 0/0:112,0:112:99:0,328,4103 0/0:129,0:129:99:0,358,4510 0/0:88,0:88:99:0,247,3100 0/0:135,0:135:99:0,382,4820 0/0:215,0:217:99:0,587,7317 0/0:108,0:108:99:0,310,3881 0/0:112,0:112:99:0,328,4082 0/0:104,0:104:99:0,310,3848 0/0:187,0:187:99:0,530,6687 0/0:156,0:156:99:0,442,5554 0/0:183,0:183:99:0,506,6380 0/0:141,0:141:99:0,385,4780 0/0:140,0:141:99:0,394,5102 0/0:92,0:92:99:0,268,3489 0/0:120,0:120:99:0,346,4463 0/0:85,0:85:99:0,244,3146 0/0:93,0:93:99:0,271,3373 0/0:111,0:111:99:0,325,4029 0/0:126,0:126:99:0,340,4301 0/0:137,0:137:99:0,388,4853 0/0:110,0:110:99:0,313,3970 0/0:149,0:150:99:0,403,5086 0/0:138,0:138:99:0,376,4712 0/0:118,0:118:99:0,340,4267 0/0:121,0:121:99:0,343,4294 0/0:132,0:132:99:0,382,4770 0/0:152,0:152:99:0,415,5200 0/0:111,0:111:99:0,310,3910 0/1:67,57:125:99:1647,0,2074 0/0:108,0:108:99:0,307,3862 0/0:114,0:114:99:0,322,4045 0/0:131,0:131:99:0,370,4654 11 46889607 . C T 1256.37 . AC=2;AF=0.024;AN=84;BaseQRankSum=-9.053;DP=3690;Dels=0.00;FS=3.081;HRun=0;HaplotypeScore=1.8898;InbreedingCoeff=-0.0244;MQ=59.29;MQ0=0;MQRankSum=0.904;QD=11.42;ReadPosRankSum=-0.898 GT:AD:DP:GQ:PL 0/0:72,0:72:99:0,187,2339 0/0:71,0:71:99:0,202,2528 0/0:60,0:60:99:0,156,1955 0/0:171,0:171:99:0,442,5946 0/0:170,0:170:99:0,442,5975 0/0:123,0:123:99:0,334,4496 0/0:100,2:102:99:0,229,3587 0/0:124,0:124:99:0,331,4405 0/0:78,0:78:99:0,211,2660 0/0:56,0:56:99:0,150,1907 0/0:89,0:89:99:0,241,3026 0/0:65,0:65:99:0,178,2231 0/0:67,0:68:99:0,163,2104 0/0:72,0:72:99:0,193,2415 0/0:209,0:210:99:0,512,6539 0/0:61,0:61:99:0,175,2196 0/0:56,0:56:99:0,150,1932 0/0:61,0:61:99:0,160,2044 0/0:73,0:73:99:0,184,2332 0/0:97,0:98:99:0,238,3099 0/0:96,0:96:99:0,244,3092 0/0:71,0:71:99:0,178,2265 0/0:206,0:206:99:0,521,7083 0/0:88,1:89:99:0,207,3182 0/0:127,0:127:99:0,328,4316 0/0:105,0:105:99:0,271,3664 0/1:30,23:53:99:582,0,858 0/0:80,0:80:99:0,214,2714 0/1:30,27:57:99:737,0,837 0/0:79,0:79:99:0,199,2545 0/0:51,0:51:99:0,138,1749 0/0:106,0:106:99:0,274,3507 0/0:46,0:47:99:0,120,1511 0/0:72,0:72:99:0,205,2553 0/0:66,0:67:99:0,172,2171 0/0:83,0:83:99:0,223,2785 0/0:87,0:88:99:0,214,2740 0/0:60,0:61:99:0,172,2109 0/0:70,0:70:99:0,199,2470 0/0:70,0:70:99:0,193,2374 0/0:70,0:70:99:0,184,2311 0/0:62,0:62:99:0,178,2202 11 46895008 . T G 724.12 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.682;DP=1561;Dels=0.00;FS=2.384;HRun=2;HaplotypeScore=1.5397;InbreedingCoeff=-0.0244;MQ=58.84;MQ0=0;MQRankSum=0.866;QD=10.34;ReadPosRankSum=-1.107 GT:AD:DP:GQ:PL 0/0:28,0:28:69.20:0,69,829 0/0:27,0:27:75.23:0,75,921 0/0:27,0:27:72.22:0,72,877 0/0:56,0:60:99:0,162,1960 0/0:63,0:68:99:0,174,2112 0/0:40,0:43:99:0,111,1363 0/0:36,0:36:96.26:0,96,1143 0/0:44,0:45:99:0,123,1501 0/0:39,0:39:99:0,111,1319 0/0:25,0:25:69.20:0,69,825 0/0:29,0:29:87.26:0,87,1046 0/0:39,0:39:99:0,105,1284 0/0:21,0:22:54.17:0,54,669 0/0:31,0:31:87.26:0,87,1052 0/0:100,0:100:99:0,274,3305 0/0:29,0:29:84.24:0,84,988 0/0:28,0:28:78.22:0,78,940 0/0:21,0:22:57.17:0,57,692 0/0:46,0:47:99:0,126,1528 0/0:52,0:52:99:0,135,1601 0/1:19,12:31:99:335,0,569 0/1:19,20:39:99:452,0,532 0/0:61,0:63:99:0,174,2079 0/0:49,0:51:99:0,123,1493 0/0:55,0:58:99:0,144,1762 0/0:38,0:39:99:0,105,1261 0/0:13,0:13:39.12:0,39,470 0/0:30,0:31:84.24:0,84,1023 0/0:22,0:22:60.14:0,60,689 0/0:29,0:29:84.24:0,84,1012 0/0:28,0:30:78.24:0,78,960 0/0:60,0:60:99:0,171,2032 0/0:27,0:28:66.18:0,66,772 0/0:41,0:42:99:0,117,1440 0/0:26,0:27:72.23:0,72,891 0/0:29,1:30:60.63:0,61,1019 0/0:31,0:31:81.26:0,81,1010 0/0:28,0:28:81.24:0,81,961 0/0:25,0:26:75.22:0,75,899 0/0:24,0:24:69.19:0,69,828 0/0:35,0:35:93.24:0,93,1115 0/0:26,0:27:75.21:0,75,891 11 46905499 . T C 1796.76 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.405;DP=3780;DS;Dels=0.00;FS=0.443;HRun=1;HaplotypeScore=1.8972;InbreedingCoeff=-0.0244;MQ=59.42;MQ0=0;MQRankSum=0.859;QD=11.98;ReadPosRankSum=1.261 GT:AD:DP:GQ:PL 0/0:81,0:81:99:0,208,2639 0/0:70,0:70:99:0,187,2333 0/0:67,0:67:99:0,184,2271 0/0:160,0:160:99:0,373,4886 0/0:116,0:116:99:0,310,3982 0/0:100,0:100:99:0,250,3268 0/0:94,0:94:99:0,247,3163 0/0:133,0:134:99:0,328,4264 0/0:73,0:73:99:0,199,2479 0/0:53,0:53:99:0,138,1738 0/0:71,0:71:99:0,199,2491 0/0:68,0:68:99:0,181,2252 0/0:51,0:51:99:0,138,1748 0/0:87,0:87:99:0,226,2853 0/0:234,0:236:99:0,563,7171 0/0:58,0:58:99:0,156,1958 0/0:81,0:81:99:0,217,2710 0/0:56,0:56:99:0,156,1934 0/0:125,0:125:99:0,325,4126 0/0:122,0:122:99:0,298,3816 0/0:134,0:135:99:0,343,4300 0/0:91,0:91:99:0,235,2933 0/0:147,0:147:99:0,385,4961 0/0:100,0:100:99:0,238,3117 0/0:124,0:125:99:0,310,4037 0/0:115,0:115:99:0,295,3813 0/0:68,0:68:99:0,163,2091 0/0:60,0:60:99:0,162,1941 0/0:71,1:72:99:0,149,2227 0/1:41,29:70:99:694,0,1180 0/0:71,0:71:99:0,196,2469 0/0:93,0:93:99:0,244,3092 0/1:37,43:80:99:1166,0,1010 0/0:56,0:56:99:0,141,1791 0/0:70,0:70:99:0,187,2357 0/0:97,0:97:99:0,250,3173 0/0:114,0:114:99:0,277,3532 0/0:56,0:56:99:0,156,1937 0/0:57,0:58:99:0,165,2001 0/0:75,0:75:99:0,202,2542 0/0:57,0:57:99:0,147,1870 0/0:67,0:67:99:0,178,2207 11 47185680 . G A 10288.71 . AC=18;AF=0.214;AN=84;BaseQRankSum=-19.826;DP=2186;Dels=0.00;FS=7.759;HRun=1;HaplotypeScore=1.4691;InbreedingCoeff=0.0101;MQ=59.16;MQ0=0;MQRankSum=-0.585;QD=14.25;ReadPosRankSum=-0.186 GT:AD:DP:GQ:PL 0/0:33,0:33:93.30:0,93,1177 0/0:40,0:40:99:0,108,1364 0/0:34,0:34:96.27:0,96,1175 0/0:149,0:149:99:0,421,5543 0/0:108,0:108:99:0,310,4076 0/1:33,23:56:99:684,0,1074 0/0:79,0:79:99:0,217,2848 1/1:0,45:45:99:1468,126,0 0/0:44,0:45:99:0,126,1599 0/0:30,0:30:87.26:0,87,1064 0/0:39,0:39:99:0,111,1410 0/1:19,13:32:99:368,0,587 0/0:16,0:16:48.15:0,48,606 0/1:19,10:29:99:265,0,570 0/0:109,0:109:99:0,295,3692 0/0:30,0:30:87.22:0,87,1050 0/0:52,0:52:99:0,141,1783 0/0:30,0:31:78.25:0,78,1002 0/0:65,1:66:99:0,184,2270 0/1:37,40:77:99:1144,0,1075 0/1:34,31:65:99:773,0,802 0/1:31,22:53:99:539,0,888 0/0:134,1:135:99:0,339,4930 0/1:46,20:66:99:438,0,1495 0/0:71,0:71:99:0,205,2620 0/1:33,30:63:99:825,0,1071 0/1:13,15:28:99:393,0,378 1/1:0,28:28:84.25:987,84,0 0/0:36,0:36:99:0,105,1332 0/0:50,0:50:99:0,144,1815 0/1:14,16:30:99:448,0,436 0/0:57,0:57:99:0,153,1910 0/1:24,31:55:99:831,0,768 0/0:37,0:37:99:0,102,1255 0/1:23,11:34:99:278,0,725 0/0:42,0:42:99:0,105,1369 0/0:61,0:61:99:0,153,1892 0/0:43,0:43:99:0,123,1506 0/0:36,0:36:99:0,99,1223 0/1:17,17:34:99:501,0,465 0/1:14,13:27:99:347,0,389 0/0:35,0:35:99:0,102,1269 11 47189690 . C T 1281.06 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.894;DP=4821;DS;Dels=0.00;FS=2.468;HRun=0;HaplotypeScore=2.4603;InbreedingCoeff=-0.0120;MQ=59.42;MQ0=0;MQRankSum=-1.129;QD=13.48;ReadPosRankSum=-1.447 GT:AD:DP:GQ:PL 0/0:97,0:97:99:0,268,3086 0/0:92,0:92:99:0,253,2913 0/0:79,0:79:99:0,214,2466 0/0:133,0:133:99:0,352,4433 0/0:120,0:120:99:0,334,4167 0/0:111,0:111:99:0,301,3812 0/0:92,0:93:99:0,241,2980 0/0:110,0:110:99:0,298,3722 0/0:107,0:107:99:0,301,3474 0/0:92,0:92:99:0,259,2912 0/0:101,0:101:99:0,274,3176 0/0:105,0:105:99:0,295,3375 0/0:81,1:82:99:0,209,2615 0/0:97,0:97:99:0,271,3064 0/0:220,1:221:99:0,565,6760 0/0:90,0:90:99:0,247,2854 0/0:110,0:110:99:0,301,3468 0/0:104,0:104:99:0,289,3255 0/0:176,1:178:99:0,447,5592 0/0:173,0:174:99:0,466,5457 0/0:178,1:180:99:0,445,5501 0/0:123,0:123:99:0,337,3816 0/0:166,0:166:99:0,454,5677 0/0:96,0:96:99:0,259,3268 0/0:101,0:101:99:0,283,3463 0/0:85,0:85:99:0,235,2931 0/0:89,0:89:99:0,238,2782 0/1:49,46:95:99:1327,0,1265 0/0:89,0:89:99:0,253,2881 0/0:106,0:106:99:0,301,3446 0/0:83,0:83:99:0,247,2853 0/0:182,0:182:99:0,475,5563 0/0:131,1:132:99:0,330,4045 0/0:100,0:100:99:0,274,3205 0/0:100,0:100:99:0,274,3155 0/0:114,0:114:99:0,319,3677 0/0:189,0:190:99:0,508,5872 0/0:101,0:101:99:0,271,3134 0/0:82,0:82:99:0,238,2764 0/0:93,0:93:99:0,262,2920 0/0:89,0:89:99:0,256,2952 0/0:126,1:129:99:0,314,3954 11 47238522 . T C 76032.59 . AC=84;AF=1.000;AN=84;BaseQRankSum=0.923;DP=2324;Dels=0.00;FS=8.112;HRun=1;HaplotypeScore=1.4271;InbreedingCoeff=-0.0000;MQ=58.54;MQ0=0;MQRankSum=0.058;QD=32.72;ReadPosRankSum=-0.196 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1334,114,0 1/1:0,41:41:99:1261,111,0 1/1:0,34:34:93.27:1120,93,0 1/1:0,109:109:99:3679,307,0 1/1:0,66:66:99:2488,199,0 1/1:0,69:69:99:2374,196,0 1/1:0,60:60:99:2017,165,0 1/1:0,70:70:99:2357,196,0 1/1:0,52:52:99:1710,144,0 1/1:0,39:39:99:1269,111,0 1/1:0,46:46:99:1539,132,0 1/1:0,35:35:99:1164,99,0 1/1:1,40:41:86.88:1307,87,0 1/1:0,56:56:99:1775,150,0 1/1:0,170:170:99:5444,469,0 1/1:0,38:38:99:1165,105,0 1/1:0,49:49:99:1605,141,0 1/1:0,43:43:99:1392,123,0 1/1:0,59:60:99:1839,165,0 1/1:0,70:70:99:2152,184,0 1/1:0,81:81:99:2460,208,0 1/1:0,52:52:99:1663,141,0 1/1:1,72:73:99:2557,205,0 1/1:0,54:54:99:1752,144,0 1/1:0,67:67:99:2192,178,0 1/1:0,52:52:99:1739,138,0 1/1:0,31:31:93.26:1088,93,0 1/1:0,40:40:99:1292,117,0 1/1:0,38:38:99:1264,108,0 1/1:1,43:44:93.23:1433,93,0 1/1:0,49:50:99:1609,141,0 1/1:0,52:52:99:1711,147,0 1/1:0,46:46:99:1552,135,0 1/1:0,49:49:99:1583,135,0 1/1:0,52:52:99:1668,144,0 1/1:0,58:58:99:1866,165,0 1/1:0,56:56:99:1811,156,0 1/1:0,45:45:99:1450,123,0 1/1:0,45:45:99:1518,135,0 1/1:0,53:53:99:1708,153,0 1/1:0,48:48:99:1614,141,0 1/1:0,47:47:99:1511,132,0 11 47261784 . C T 864.57 . AC=1;AF=0.012;AN=84;BaseQRankSum=-8.006;DP=2074;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.1833;InbreedingCoeff=-0.0120;MQ=58.89;MQ0=0;MQRankSum=0.448;QD=12.53;ReadPosRankSum=1.486 GT:AD:DP:GQ:PL 0/0:33,0:33:87.28:0,87,1130 0/0:29,0:29:81.23:0,81,1019 0/0:30,0:30:81.26:0,81,1059 0/0:109,0:109:99:0,298,4056 0/0:100,0:100:99:0,283,3878 0/0:81,0:81:99:0,226,3047 0/0:78,0:78:99:0,214,2966 0/0:73,0:73:99:0,202,2768 0/0:35,0:35:90.29:0,90,1180 0/0:28,0:28:78.24:0,78,988 0/0:33,0:33:87.27:0,87,1104 0/0:33,0:33:93.30:0,93,1192 0/0:29,0:29:81.25:0,81,1018 0/0:43,0:43:99:0,117,1491 0/0:135,0:135:99:0,334,4312 0/0:42,0:42:99:0,123,1562 0/0:36,0:36:99:0,102,1308 0/0:25,0:25:69.22:0,69,879 0/0:66,0:66:99:0,181,2268 0/0:82,0:82:99:0,217,2807 0/0:55,0:55:99:0,138,1815 0/0:29,1:30:53.56:0,54,932 0/0:128,0:128:99:0,346,4805 0/0:50,0:50:99:0,144,1967 0/0:69,0:69:99:0,196,2689 0/0:69,0:69:99:0,184,2516 0/0:26,0:26:69.21:0,69,888 0/0:40,0:40:93.30:0,93,1229 0/0:22,0:22:63.20:0,63,812 0/0:28,0:28:75.23:0,75,951 0/0:27,0:27:72.23:0,72,932 0/1:35,34:69:99:911,0,1004 0/0:47,0:47:99:0,123,1598 0/0:35,0:35:99:0,99,1256 0/0:23,0:23:60.19:0,60,786 0/0:33,0:33:96.28:0,96,1200 0/0:57,0:57:99:0,160,2018 0/0:30,0:30:84.27:0,84,1071 0/0:30,0:30:87.28:0,87,1108 0/0:25,0:25:63.20:0,63,808 0/0:32,0:32:90.27:0,90,1122 0/0:29,0:29:78.25:0,78,1015 11 47270255 . C T 4917.65 . AC=25;AF=0.298;AN=84;BaseQRankSum=4.784;DP=570;Dels=0.00;FS=3.966;HRun=0;HaplotypeScore=0.4302;InbreedingCoeff=0.0258;MQ=58.32;MQ0=0;MQRankSum=0.667;QD=17.08;ReadPosRankSum=0.110 GT:AD:DP:GQ:PL 0/0:7,0:7:18.05:0,18,196 0/0:15,0:15:36.04:0,36,387 0/0:5,0:5:15.04:0,15,165 0/1:14,20:35:99:525,0,349 0/1:22,8:30:99:172,0,550 0/0:29,0:29:63.18:0,63,824 0/0:13,0:13:30.09:0,30,373 0/0:14,0:14:33.07:0,33,380 0/1:5,5:10:96.26:133,0,96 0/0:14,0:14:36.06:0,36,407 0/1:2,6:8:43.92:172,0,44 0/1:3,3:6:83.40:95,0,83 0/1:2,2:4:52.02:60,0,52 1/1:0,6:6:18.06:221,18,0 1/1:0,32:32:72.22:920,72,0 0/1:3,4:7:75.49:121,0,75 0/1:6,5:11:88.12:88,0,150 0/0:10,0:10:27.06:0,27,300 0/0:12,0:12:27.08:0,27,335 0/1:5,9:14:99:238,0,133 0/0:23,0:23:54.16:0,54,653 0/0:13,0:13:36.10:0,36,429 0/0:40,0:41:96.30:0,96,1249 1/1:0,16:16:45.13:574,45,0 1/1:0,15:15:33.10:439,33,0 0/1:20,11:32:99:172,0,477 0/1:2,3:5:49.01:94,0,49 0/0:10,0:10:30.09:0,30,348 0/1:4,2:6:56.72:57,0,128 0/0:10,0:10:30.07:0,30,341 0/1:4,1:5:24.96:25,0,91 0/1:8,9:17:99:269,0,159 0/0:12,0:12:24.04:0,24,274 0/0:8,0:8:21.03:0,21,227 0/0:7,0:7:18.04:0,18,189 0/1:5,7:12:99:211,0,106 0/0:17,0:17:48.14:0,48,576 0/0:6,0:6:15.05:0,15,181 0/0:9,0:9:18.04:0,18,211 0/1:2,5:7:50.63:140,0,51 0/1:4,6:10:99:191,0,113 0/0:7,0:7:18.05:0,18,214 11 47270313 . G A 115.59 . AC=3;AF=0.037;AN=82;BaseQRankSum=0.829;DP=230;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2981;InbreedingCoeff=-0.0935;MQ=57.73;MQ0=0;MQRankSum=-0.033;QD=5.50;ReadPosRankSum=-0.809 GT:AD:DP:GQ:PL 0/0:6,0:6:15.03:0,15,158 0/0:5,0:5:12.03:0,12,136 0/0:3,0:3:9.03:0,9,109 0/0:12,0:12:36.11:0,36,452 0/0:12,0:12:33.10:0,33,409 0/1:6,5:11:99:145,0,136 0/0:7,0:7:12.04:0,12,162 0/1:3,1:4:24.41:24,0,74 0/0:2,0:2:6.02:0,6,76 0/0:4,0:5:12.04:0,12,150 0/0:3,0:3:6.02:0,6,65 0/0:2,0:2:6.02:0,6,69 ./. 0/0:3,0:3:9.02:0,9,95 0/0:17,0:17:42.10:0,42,458 0/0:3,0:3:6:0,6,60 0/0:6,0:6:18.04:0,18,191 0/0:3,0:3:9.01:0,9,93 0/0:6,0:6:15.02:0,15,166 0/0:10,0:10:27.03:0,27,284 0/0:6,0:6:9.02:0,9,112 0/0:6,0:6:18.04:0,18,200 0/0:10,0:10:24.08:0,24,310 0/0:10,0:10:21.06:0,21,255 0/0:6,0:6:15.03:0,15,179 0/0:13,0:13:33.10:0,33,402 0/0:3,0:3:6.02:0,6,68 0/0:2,0:2:6.01:0,6,58 0/0:1,0:1:2.98:0,3,22 0/0:5,0:5:15.04:0,15,166 0/0:5,0:5:9.03:0,9,110 0/1:5,1:6:18.39:18,0,120 0/0:6,0:6:15.05:0,15,196 0/0:2,0:2:3.01:0,3,33 0/0:5,0:5:12.03:0,12,137 0/0:6,0:6:18.04:0,18,195 0/0:7,0:7:15.04:0,15,173 0/0:2,0:2:6.02:0,6,72 0/0:2,0:2:3.01:0,3,39 0/0:1,0:1:2.98:0,3,22 0/0:1,0:1:3.01:0,3,32 0/0:4,0:4:9.02:0,9,93 11 47280781 . T TG 3.69 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.633;DP=5806;DS;FS=2342.303;HRun=5;HaplotypeScore=385.0166;InbreedingCoeff=-0.0230;MQ=59.63;MQ0=0;MQRankSum=3.599;QD=0.02;ReadPosRankSum=-18.565 GT:AD:DP:GQ:PL 0/0:103,0:104:79.32:0,79,1850 0/0:103,0:103:48.99:0,49,1965 0/0:95,0:95:99:0,149,1943 0/0:185,48:233:99:0,142,3869 0/0:234,0:234:99:0,170,4136 0/0:237,0:233:99:0,330,4823 0/0:214,0:208:99:0,354,4533 0/0:240,0:235:99:0,354,4589 0/0:112,0:112:68.93:0,69,2024 0/0:90,0:90:99:0,110,1520 0/0:112,0:112:99:0,175,2148 0/0:90,0:90:99:0,117,1697 0/0:84,0:84:99:0,124,1613 0/0:100,0:100:59.57:0,60,1945 0/0:190,29:219:99:0,186,3953 0/0:78,0:78:13.44:0,13,1262 0/0:106,0:106:45.79:0,46,1797 0/0:102,0:102:39.99:0,40,1922 0/0:178,0:178:99:0,108,2792 0/0:218,0:218:99:0,287,4474 0/0:162,34:197:99:0,127,3525 0/0:132,0:132:99:0,168,2576 0/0:223,0:223:99:0,140,3607 0/0:168,35:201:99:0,256,3765 0/0:220,0:216:99:0,217,4283 0/0:214,0:211:99:0,216,3878 0/0:74,0:74:64.15:0,64,1375 0/0:70,17:87:0.92:6,0,1314 0/0:57,16:73:74.20:0,74,1375 0/0:111,0:111:31:0,31,1681 0/0:78,0:78:96.75:0,97,1699 0/0:178,0:178:99:0,133,3061 0/0:144,0:144:99:0,174,2800 0/0:88,0:88:56.77:0,57,1698 0/0:92,0:92:43.23:0,43,1527 0/0:117,0:117:99:0,203,2181 0/1:155,36:191:56.09:56,0,3060 0/0:93,0:93:99:0,120,1815 0/0:88,0:88:60.09:0,60,1469 0/0:88,0:88:23:0,23,1348 0/0:85,0:85:15.18:0,15,1514 0/0:81,0:81:99:0,159,1677 11 47282024 . C T 13933.54 . AC=11;AF=0.131;AN=84;BaseQRankSum=8.891;DP=3162;DS;Dels=0.00;FS=1.242;HRun=0;HaplotypeScore=2.3901;InbreedingCoeff=0.0585;MQ=59.01;MQ0=0;MQRankSum=0.181;QD=15.03;ReadPosRankSum=4.499 GT:AD:DP:GQ:PL 0/0:61,0:62:99:0,171,1937 0/0:65,0:65:99:0,186,2057 0/0:55,0:55:99:0,153,1659 0/1:61,71:132:99:2001,0,1757 0/1:48,45:93:99:1326,0,1361 0/0:81,0:82:99:0,229,2722 0/0:57,0:58:99:0,165,1984 0/0:61,0:61:99:0,171,2001 0/0:70,0:70:99:0,199,2257 0/0:39,0:39:99:0,111,1231 0/0:61,0:61:99:0,165,1805 0/0:63,0:63:99:0,174,1935 0/1:26,24:51:99:623,0,719 0/0:60,0:60:99:0,165,1817 0/1:103,88:191:99:2220,0,2533 0/1:38,33:71:99:881,0,988 0/0:63,0:64:99:0,177,1956 0/0:63,0:63:99:0,174,2000 0/0:111,0:111:99:0,301,3317 0/1:64,67:132:99:1838,0,1682 0/0:126,0:127:99:0,337,3840 0/0:74,1:76:99:0,177,2293 0/0:103,0:103:99:0,289,3412 1/1:0,59:59:99:2002,165,0 0/1:41,48:89:99:1381,0,1057 0/1:29,31:61:99:864,0,794 0/0:49,0:50:99:0,132,1537 0/0:63,0:63:99:0,171,1914 0/0:54,0:54:99:0,156,1730 0/0:70,0:70:99:0,198,2202 0/0:52,0:52:99:0,132,1492 0/0:121,0:121:99:0,343,3769 0/0:77,0:77:99:0,210,2302 0/0:60,0:60:99:0,156,1775 0/0:57,1:58:99:0,135,1820 0/1:22,26:48:99:797,0,531 0/0:107,0:107:99:0,295,3298 0/0:69,0:69:99:0,192,2129 0/0:73,0:73:99:0,201,2205 0/0:58,0:58:99:0,171,1897 0/0:46,1:47:91.09:0,91,1374 0/0:56,0:56:99:0,159,1826 11 47303275 . T C 19387.79 . AC=29;AF=0.345;AN=84;BaseQRankSum=-15.322;DP=2223;Dels=0.00;FS=0.171;HRun=0;HaplotypeScore=0.9756;InbreedingCoeff=-0.1060;MQ=58.62;MQ0=0;MQRankSum=2.118;QD=15.33;ReadPosRankSum=-2.684 GT:AD:DP:GQ:PL 0/0:32,0:32:84.26:0,84,1055 0/0:58,0:58:99:0,162,1966 0/0:41,1:42:82.68:0,83,1284 0/0:77,0:77:99:0,181,2291 0/0:82,0:82:99:0,208,2663 0/1:22,33:55:99:993,0,543 0/1:26,22:48:99:627,0,771 0/0:73,0:73:99:0,187,2387 0/1:27,29:56:99:763,0,701 0/1:25,30:55:99:781,0,642 0/0:46,1:47:88.58:0,89,1458 0/0:44,0:44:99:0,120,1476 0/0:43,0:43:99:0,120,1435 0/0:38,0:38:99:0,108,1306 0/0:150,0:150:99:0,397,4842 0/0:37,0:37:99:0,105,1248 0/1:24,23:47:99:564,0,679 1/1:0,35:35:99:1114,99,0 1/1:0,72:72:99:2177,189,0 0/1:36,38:74:99:921,0,1000 0/1:33,33:66:99:842,0,887 0/1:19,24:43:99:638,0,501 0/1:49,53:102:99:1363,0,1408 0/0:45,0:45:99:0,108,1375 0/0:63,0:63:99:0,175,2137 0/1:25,16:41:99:440,0,697 0/0:38,0:38:99:0,102,1249 0/1:18,23:41:99:620,0,444 0/1:18,21:39:99:562,0,484 1/1:0,37:37:99:1153,99,0 0/1:20,13:33:99:269,0,566 0/1:45,40:85:99:916,0,1264 0/1:31,23:54:99:529,0,857 1/1:0,39:39:99:1185,105,0 0/1:26,12:39:99:292,0,730 0/1:17,24:41:99:614,0,472 0/1:26,23:49:99:558,0,622 0/1:25,18:43:99:433,0,694 0/1:16,17:33:99:450,0,438 0/0:43,0:43:99:0,117,1389 0/0:46,0:46:99:0,117,1445 0/1:16,22:38:99:583,0,473 11 47356628 . G C 114.61 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.202;DP=641;Dels=0.00;FS=13.484;HRun=0;HaplotypeScore=0.5859;InbreedingCoeff=-0.0140;MQ=56.47;MQ0=0;MQRankSum=1.441;QD=12.73;ReadPosRankSum=1.079 GT:AD:DP:GQ:PL 0/0:10,0:10:27.08:0,27,321 0/0:7,0:7:15.04:0,15,175 0/0:10,0:10:30.07:0,30,348 0/0:29,0:29:81.24:0,81,985 0/0:25,0:25:66.20:0,66,819 0/0:18,0:18:48.15:0,48,618 0/0:21,0:21:51.16:0,51,663 0/0:13,0:13:36.11:0,36,450 0/0:10,0:10:27.07:0,27,314 0/0:10,0:10:30.08:0,30,348 0/0:14,0:14:36.10:0,36,427 0/0:10,0:10:27.08:0,27,327 0/0:9,0:9:27.07:0,27,313 0/0:7,0:7:18.05:0,18,209 0/0:45,0:45:99:0,117,1400 0/0:9,0:9:27.08:0,27,318 0/0:7,0:7:15.04:0,15,173 0/1:4,5:9:89.17:161,0,89 0/0:31,0:31:87.19:0,87,981 0/0:27,0:27:72.21:0,72,880 0/0:14,0:14:33.09:0,33,388 0/0:23,0:24:66.19:0,66,797 0/0:34,0:34:90.24:0,90,1102 0/0:17,0:17:48.14:0,48,605 0/0:16,0:16:45.14:0,45,580 0/0:17,0:17:45.12:0,45,551 0/0:6,0:6:15.05:0,15,185 0/0:14,0:15:39.11:0,39,452 0/0:14,0:14:39.12:0,39,470 0/0:18,0:18:48.14:0,48,577 0/0:6,0:6:18.05:0,18,203 0/0:21,0:21:57.17:0,57,710 0/0:18,0:18:42.10:0,42,487 0/0:11,0:11:33.08:0,33,374 0/0:10,0:10:24.07:0,24,293 0/0:7,0:7:21.03:0,21,224 0/0:12,0:12:27.08:0,27,331 0/0:7,0:7:21.05:0,21,241 0/0:13,0:13:36.06:0,36,391 0/0:13,0:13:33.10:0,33,407 0/0:9,0:9:27.08:0,27,329 0/0:18,0:18:54.15:0,54,649 11 47356641 . CAGG C 99.34 . AC=6;AF=0.071;AN=84;BaseQRankSum=0.296;DP=567;FS=28.522;HRun=0;HaplotypeScore=51.5405;InbreedingCoeff=-0.1050;MQ=56.38;MQ0=0;MQRankSum=0.291;QD=1.03;ReadPosRankSum=-3.556 GT:AD:DP:GQ:PL 0/0:9,0:9:18:0,18,430 0/0:8,0:8:15.05:0,15,274 0/0:8,0:8:12.04:0,12,271 0/0:35,0:35:13.95:0,14,744 0/1:21,11:32:88.11:88,0,580 0/0:19,0:19:21.06:0,21,456 0/0:17,0:16:29.96:0,30,602 0/0:16,0:16:27.06:0,27,511 0/0:8,0:8:9.03:0,9,210 0/1:7,0:7:18.60:19,0,116 0/0:14,0:14:18.04:0,18,340 0/0:6,0:6:12.04:0,12,271 0/0:9,0:9:14.94:0,15,282 0/0:9,0:9:15.05:0,15,328 0/1:32,0:32:40.04:40,0,870 0/0:7,0:7:15.01:0,15,241 0/1:4,0:4:18.91:19,0,66 0/0:11,0:11:21.07:0,21,458 0/0:21,0:21:8.79:0,9,768 0/0:18,0:18:20.83:0,21,792 0/1:11,0:11:29.68:30,0,437 0/0:17,0:17:11.23:0,11,807 0/0:34,0:34:15.31:0,15,917 0/0:18,0:16:21.06:0,21,414 0/0:18,0:18:39.12:0,39,816 0/0:13,0:13:1.84:3,0,382 0/0:6,0:6:12.04:0,12,266 0/0:11,0:11:9.02:0,9,187 0/0:12,0:12:18.06:0,18,432 0/0:13,0:13:32.99:0,33,599 0/0:7,0:7:12.01:0,12,204 0/0:16,0:16:33.05:0,33,683 0/0:22,0:22:55.79:0,56,1078 0/0:9,0:9:8.97:0,9,127 0/0:8,0:8:18.06:0,18,409 0/0:7,0:7:12.04:0,12,282 0/0:8,0:8:9.03:0,9,209 0/0:8,0:8:8.05:0,8,152 0/0:11,0:11:24.08:0,24,485 0/0:10,0:10:24.06:0,24,492 0/0:8,0:8:15.05:0,15,300 0/1:10,0:10:14.89:15,0,175 11 47356642 . A C 90.62 . AC=10;AF=0.119;AN=84;BaseQRankSum=-3.608;DP=567;Dels=0.02;FS=47.923;HRun=2;HaplotypeScore=1.8720;InbreedingCoeff=-0.0803;MQ=56.38;MQ0=0;MQRankSum=1.505;QD=0.52;ReadPosRankSum=-2.198 GT:AD:DP:GQ:PL 0/0:7,2:9:18.04:0,18,204 0/0:7,1:8:6.02:0,6,68 0/0:7,1:8:9.02:0,9,100 0/0:23,11:35:1.97:2,0,279 0/1:13,8:21:8.17:8,0,258 0/1:16,3:19:10.60:11,0,161 0/0:12,4:17:15.05:0,15,193 0/0:12,3:16:15.05:0,15,181 0/0:5,1:8:9.03:0,9,111 0/1:2,3:7:1.76:34,3,0 0/0:7,5:14:12.04:0,12,145 0/0:4,2:6:9.02:0,9,99 0/0:6,3:9:12.03:0,12,136 0/0:6,2:9:12.03:0,12,138 0/1:22,7:32:53.07:53,0,328 0/0:6,0:7:9.03:0,9,107 0/0:1,2:4:3.01:0,3,33 0/0:9,2:11:18.05:0,18,210 0/0:15,5:21:2.64:0,3,335 0/0:11,5:18:18.05:0,18,214 0/1:8,3:11:16.30:16,0,166 0/0:14,3:17:3.57:0,4,338 0/1:19,13:34:6.89:7,0,290 0/0:13,4:18:18.05:0,18,212 0/0:14,3:18:27.06:0,27,297 0/1:8,3:13:16.31:16,0,153 0/0:4,1:6:9.01:0,9,90 0/0:8,3:11:6.02:0,6,74 0/0:9,3:12:18.05:0,18,212 0/0:11,0:13:18.04:0,18,200 0/0:5,2:7:9.02:0,9,89 0/0:13,3:16:5.39:0,5,298 0/0:19,0:22:36.08:0,36,401 0/1:6,3:9:15.67:16,0,29 0/0:6,2:8:15.05:0,15,177 0/0:7,0:7:12.02:0,12,132 0/0:3,3:8:9:0,9,94 0/1:4,3:8:30.11:30,0,31 0/0:9,2:11:20.98:0,21,199 0/0:9,1:10:21.05:0,21,229 0/0:5,2:8:9.02:0,9,93 0/1:4,6:10:22.52:23,0,65 11 47356644 . G C 212.70 . AC=15;AF=0.179;AN=84;BaseQRankSum=-5.111;DP=619;Dels=0.02;FS=76.454;HRun=3;HaplotypeScore=1.5481;InbreedingCoeff=-0.2545;MQ=56.12;MQ0=0;MQRankSum=0.471;QD=0.95;ReadPosRankSum=-3.380 GT:AD:DP:GQ:PL 0/0:6,4:10:18.05:0,18,209 0/1:5,4:9:21.58:22,0,54 0/1:7,5:12:22.34:22,0,85 0/0:17,17:34:2.27:2,0,227 0/0:21,1:22:27.09:0,27,352 0/0:9,6:15:15.05:0,15,187 0/0:13,7:20:24.07:0,24,294 0/1:12,12:24:7.29:7,0,260 0/0:5,5:10:6.02:0,6,79 0/1:3,2:5:20.64:21,0,38 0/1:9,4:13:23.47:23,0,65 0/0:5,1:6:12.03:0,12,131 0/0:8,2:10:12.03:0,12,137 0/1:6,3:9:17.45:17,0,130 0/0:18,15:33:14.40:0,14,345 0/0:3,5:8:3.01:0,3,34 0/1:3,5:8:15.67:16,0,31 0/0:9,2:11:18.05:0,18,218 0/1:14,8:22:30.78:31,0,309 0/0:13,8:21:0.84:0,1,232 0/0:11,2:13:21.06:0,21,258 0/0:14,4:18:27.04:0,27,289 0/1:19,14:33:54.38:54,0,416 0/1:9,5:14:5.64:6,0,166 0/0:16,10:26:27.08:0,27,331 0/1:8,3:11:19.51:20,0,101 0/0:7,2:9:9.03:0,9,110 0/0:7,3:10:6.02:0,6,72 0/0:9,4:13:18:0,18,192 0/0:9,7:16:18.04:0,18,207 0/1:3,4:7:16.68:31,0,17 0/1:14,9:23:9.90:10,0,259 0/1:16,9:25:69.52:70,0,295 0/0:6,3:9:9:0,9,93 0/0:8,2:10:12.01:0,12,134 0/0:5,3:8:9.03:0,9,109 0/0:7,5:12:9.01:0,9,96 0/0:3,6:9:9.03:0,9,106 0/1:8,2:10:6.68:7,0,107 0/0:5,7:12:10.28:0,10,145 0/0:5,5:10:12.02:0,12,128 0/0:4,4:8:9.03:0,9,110 11 47356644 . G GC 233.67 . AC=18;AF=0.214;AN=84;BaseQRankSum=4.467;DP=660;FS=97.545;HRun=3;HaplotypeScore=77.9554;InbreedingCoeff=-0.3016;MQ=55.55;MQ0=0;MQRankSum=-1.309;QD=0.69;ReadPosRankSum=-8.900 GT:AD:DP:GQ:PL 0/0:11,0:11:18.05:0,18,215 0/1:10,0:10:8.94:9,0,93 0/1:13,0:13:14.74:15,0,121 0/0:34,0:34:2.66:0,3,205 0/1:35,0:35:66.84:67,0,188 0/0:15,0:15:11.95:0,12,116 0/0:22,0:21:19.29:0,19,193 0/1:27,0:26:14.76:15,0,189 0/0:13,0:13:9.02:0,9,100 0/1:5,0:5:15.92:16,0,48 0/1:12,0:12:16.15:16,0,101 0/0:6,0:6:6.01:0,6,66 0/1:6,5:11:66.24:66,0,111 0/1:9,0:9:10.99:11,0,132 0/1:36,0:36:14.81:15,0,268 0/1:10,0:10:4.95:5,0,29 0/1:9,0:9:15.90:16,0,58 0/0:11,0:11:17.06:0,17,161 0/1:25,0:25:24.52:25,0,272 0/1:22,0:22:17.91:18,0,209 0/1:15,0:15:5.73:6,0,209 0/0:18,0:18:27.02:0,27,285 0/1:34,0:34:46.74:47,0,284 0/0:14,0:12:10.22:0,10,95 0/0:27,0:26:28.20:0,28,318 0/0:14,0:13:10.20:0,10,106 0/0:9,0:9:15.04:0,15,175 0/0:12,0:12:8.38:0,8,80 0/0:15,0:15:15.03:0,15,168 0/0:14,0:14:0.99:0,1,131 0/0:8,0:8:8.94:0,9,79 0/1:24,0:24:5.47:5,0,260 0/1:28,0:28:33.13:33,0,319 0/0:9,0:9:5.95:0,6,48 0/0:10,0:10:17.97:0,18,195 0/0:8,0:8:12.03:0,12,143 0/0:13,0:13:6.01:0,6,71 0/0:9,0:9:6:0,6,60 0/0:12,0:12:17.23:0,17,172 0/1:12,0:12:9.74:10,0,161 0/0:11,0:11:15.01:0,15,159 0/0:8,0:8:6.01:0,6,72 11 47358997 . G A 2862.09 . AC=6;AF=0.071;AN=84;BaseQRankSum=-11.583;DP=1848;Dels=0.00;FS=28.011;HRun=1;HaplotypeScore=1.0604;InbreedingCoeff=-0.0769;MQ=58.86;MQ0=0;MQRankSum=0.407;QD=13.69;ReadPosRankSum=-1.844 GT:AD:DP:GQ:PL 0/0:24,0:24:69.19:0,69,832 0/0:34,0:34:93.29:0,93,1173 0/0:31,0:31:90.28:0,90,1134 0/0:86,0:87:99:0,244,3197 0/0:90,0:91:99:0,250,3272 0/0:49,0:49:99:0,135,1765 0/0:46,0:46:99:0,114,1539 0/0:59,0:59:99:0,157,2093 0/0:25,0:25:75.18:0,75,903 0/0:22,0:22:63.18:0,63,757 0/0:25,0:25:72.23:0,72,923 0/1:13,17:30:99:503,0,325 0/0:29,0:29:81.22:0,81,994 0/1:17,9:26:99:201,0,539 0/0:113,0:114:99:0,316,3963 0/0:40,0:40:99:0,108,1335 0/0:28,0:28:81.25:0,81,1016 0/0:21,0:21:57.16:0,57,680 0/0:69,0:69:99:0,196,2441 0/0:88,0:89:99:0,235,2948 0/0:67,0:68:99:0,181,2266 0/0:44,0:45:99:0,123,1531 0/0:103,0:103:99:0,262,3548 0/0:32,0:32:93.30:0,93,1250 0/0:51,0:52:99:0,138,1789 0/0:43,0:43:99:0,117,1505 0/0:26,0:26:72.20:0,72,881 0/0:41,0:41:99:0,114,1422 0/0:20,0:20:60.19:0,60,745 0/0:25,0:25:66.20:0,66,808 0/1:13,15:28:99:446,0,374 0/1:32,32:64:99:860,0,906 0/0:59,0:59:99:0,166,2091 0/0:26,0:26:78.24:0,78,958 0/0:45,0:45:99:0,126,1585 0/0:32,0:32:90.27:0,90,1108 0/0:43,0:43:99:0,123,1555 0/0:28,0:28:81.24:0,81,1004 0/0:37,0:37:99:0,108,1325 0/1:11,18:29:99:538,0,299 0/1:16,16:32:99:420,0,451 0/0:31,0:31:90.28:0,90,1122 11 47364145 . A T 168.83 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.578;DP=1024;Dels=0.00;FS=4.171;HRun=0;HaplotypeScore=0.4770;InbreedingCoeff=-0.0121;MQ=59.15;MQ0=0;MQRankSum=1.324;QD=12.99;ReadPosRankSum=-1.125 GT:AD:DP:GQ:PL 0/0:18,0:18:51.15:0,51,617 0/0:15,0:15:45.14:0,45,547 0/0:16,0:16:45.14:0,45,560 0/0:42,0:42:99:0,123,1473 0/0:33,0:33:96.26:0,96,1155 0/0:35,0:35:99:0,105,1310 0/0:15,0:15:45.14:0,45,567 0/0:30,0:30:90.26:0,90,1091 0/0:25,0:25:69.21:0,69,836 0/0:22,0:22:57.16:0,57,700 0/0:20,0:20:57.17:0,57,682 0/0:25,0:25:72.22:0,72,875 0/1:6,7:13:99:215,0,183 0/0:17,0:17:48.15:0,48,600 0/0:48,0:48:99:0,138,1677 0/0:24,0:24:72.22:0,72,869 0/0:21,0:21:63.19:0,63,760 0/0:18,0:18:54.15:0,54,641 0/0:42,0:42:99:0,111,1364 0/0:44,0:44:99:0,123,1472 0/0:44,0:44:99:0,126,1511 0/0:32,0:32:93.28:0,93,1111 0/0:37,0:37:99:0,108,1308 0/0:23,0:23:69.21:0,69,848 0/0:28,0:28:84.26:0,84,1029 0/0:12,0:12:33.11:0,33,420 0/0:20,0:20:57.18:0,57,697 0/0:14,0:14:42.13:0,42,502 0/0:18,0:18:54.16:0,54,657 0/0:16,0:16:45.14:0,45,549 0/0:14,0:14:39.12:0,39,474 0/0:33,0:33:93.29:0,93,1143 0/0:28,0:28:84.25:0,84,1011 0/0:19,0:19:57.18:0,57,700 0/0:16,0:16:48.15:0,48,592 0/0:26,0:26:72.19:0,72,853 0/0:37,0:37:96.30:0,96,1179 0/0:15,0:15:45.13:0,45,535 0/0:21,0:21:60.18:0,60,738 0/0:15,0:15:45.13:0,45,541 0/0:21,0:21:60.17:0,60,718 0/0:12,0:12:36.11:0,36,442 11 47367871 . C T 354.11 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.323;DP=807;Dels=0.00;FS=1.247;HRun=0;HaplotypeScore=1.0209;InbreedingCoeff=-0.0121;MQ=58.83;MQ0=0;MQRankSum=1.240;QD=10.12;ReadPosRankSum=3.099 GT:AD:DP:GQ:PL 0/0:20,0:20:57.15:0,57,630 0/0:14,0:14:39.07:0,39,420 0/0:15,0:15:39.10:0,39,425 0/0:27,0:27:75.22:0,75,884 0/0:30,0:30:81.23:0,81,963 0/0:13,0:13:36.11:0,36,428 0/0:18,0:18:51.15:0,51,622 0/0:13,0:13:39.11:0,39,458 0/0:15,0:15:45.11:0,45,488 0/0:20,0:20:54.14:0,54,620 0/0:19,0:19:54.14:0,54,588 0/0:10,0:10:30.08:0,30,331 0/0:12,0:12:33.09:0,33,369 0/0:20,0:20:51.13:0,51,569 0/0:52,0:52:99:0,135,1546 0/0:23,0:23:63.17:0,63,721 0/0:12,0:12:33.07:0,33,349 0/0:11,0:11:33.09:0,33,365 0/0:27,0:27:75.16:0,75,810 0/0:37,0:37:99:0,102,1182 0/0:16,0:16:45.10:0,45,478 0/0:31,0:31:87.20:0,87,956 0/0:19,0:19:54.16:0,54,648 0/0:13,0:13:36.11:0,36,455 0/0:31,0:31:87.23:0,87,1035 0/0:10,0:10:30.08:0,30,344 0/0:10,0:10:30.08:0,30,334 0/0:18,0:18:54.15:0,54,612 0/0:11,0:11:33.10:0,33,384 0/0:19,0:19:57.13:0,57,611 0/0:16,0:16:45.12:0,45,501 0/1:20,15:35:99:400,0,555 0/0:24,0:24:69.18:0,69,766 0/0:21,0:21:57.13:0,57,620 0/0:14,0:14:42.11:0,42,469 0/0:17,0:17:51.12:0,51,556 0/0:20,0:20:60.16:0,60,659 0/0:15,0:15:39.11:0,39,449 0/0:16,0:16:45.11:0,45,492 0/0:19,0:19:48.12:0,48,537 0/0:13,0:13:39.06:0,39,403 0/0:11,0:11:30.07:0,30,327 11 47369443 . G A 223.10 . AC=6;AF=0.071;AN=84;BaseQRankSum=0.218;DP=297;Dels=0.00;FS=1.140;HRun=0;HaplotypeScore=0.2507;InbreedingCoeff=-0.0930;MQ=58.73;MQ0=0;MQRankSum=0.619;QD=7.20;ReadPosRankSum=-0.973 GT:AD:DP:GQ:PL 0/0:10,0:10:24.04:0,24,272 0/0:5,0:5:12.04:0,12,157 0/0:6,0:6:15.05:0,15,190 0/0:7,0:7:18.06:0,18,233 0/0:8,0:8:18.06:0,18,243 0/0:6,0:6:12.04:0,12,165 0/0:4,0:4:12.04:0,12,156 0/0:4,0:4:9.01:0,9,101 0/1:3,1:4:24.13:24,0,73 0/0:9,0:9:21.06:0,21,269 0/1:2,2:4:24.41:24,0,58 0/0:9,0:9:21.05:0,21,239 0/0:4,0:4:12.03:0,12,134 0/1:3,3:6:90.61:94,0,91 0/0:23,0:23:51.14:0,51,622 0/0:7,0:7:18.05:0,18,214 0/0:5,0:5:15.04:0,15,184 0/0:10,0:10:24.07:0,24,301 0/0:12,0:12:36.10:0,36,424 0/0:18,0:18:48.15:0,48,598 0/0:6,0:6:15.03:0,15,165 0/0:5,0:6:9.03:0,9,119 0/0:6,0:6:18.06:0,18,234 0/0:2,0:2:6.01:0,6,63 0/1:3,1:4:21.65:29,0,22 0/0:5,0:5:9.03:0,9,127 0/1:3,1:4:24.94:25,0,101 0/0:5,0:5:12.03:0,12,138 0/1:4,5:9:78.04:131,0,78 0/0:9,0:9:24.07:0,24,278 0/0:7,0:7:18.04:0,18,216 0/0:8,0:8:21.06:0,21,243 0/0:11,0:11:27.07:0,27,304 0/0:5,0:5:12.04:0,12,161 0/0:6,0:6:18.04:0,18,205 0/0:9,0:9:21.06:0,21,255 0/0:7,0:7:18.05:0,18,217 0/0:6,0:6:15.05:0,15,189 0/0:5,0:5:15.04:0,15,169 0/0:4,0:4:12.03:0,12,133 0/0:5,0:5:15.05:0,15,181 0/0:7,0:7:18.05:0,18,226 11 47370041 . T C 1615.06 . AC=6;AF=0.071;AN=84;BaseQRankSum=-2.118;DP=1084;Dels=0.00;FS=6.308;HRun=1;HaplotypeScore=0.8715;InbreedingCoeff=-0.0770;MQ=58.72;MQ0=0;MQRankSum=0.268;QD=13.57;ReadPosRankSum=-0.803 GT:AD:DP:GQ:PL 0/0:16,0:16:42.12:0,42,495 0/0:26,0:26:69.21:0,69,846 0/0:21,1:22:54.17:0,54,672 0/0:43,0:43:99:0,102,1317 0/0:40,1:41:90.29:0,90,1173 0/0:38,1:39:93.28:0,93,1186 0/0:17,0:17:42.13:0,42,540 0/0:26,0:26:66.21:0,66,844 0/1:14,12:26:99:288,0,394 0/0:18,0:18:45.14:0,45,553 0/1:9,11:20:99:316,0,222 0/0:20,0:20:48.13:0,48,586 0/0:9,0:9:24.05:0,24,286 0/1:7,10:18:99:260,0,174 0/0:68,0:68:99:0,168,2023 0/0:15,0:15:42.12:0,42,503 0/0:13,0:13:36.11:0,36,443 0/0:24,0:24:66.20:0,66,811 0/0:41,0:41:99:0,99,1245 0/0:41,0:41:96.30:0,96,1238 0/0:34,0:34:90.28:0,90,1119 0/0:32,0:32:81.21:0,81,978 0/0:32,0:32:81.26:0,81,1032 0/0:27,0:27:63.20:0,63,813 0/1:12,6:18:99:143,0,298 0/0:26,0:26:63.20:0,63,798 0/1:8,14:22:99:395,0,195 0/0:11,0:11:33.10:0,33,405 0/1:4,11:15:72.37:319,0,72 0/0:24,0:24:72.22:0,72,878 0/0:22,0:22:57.17:0,57,702 0/0:37,0:37:90.26:0,90,1135 0/0:37,0:37:90.24:0,90,1097 0/0:13,0:13:33.11:0,33,428 0/0:26,0:26:72.22:0,72,885 0/0:23,0:23:63.20:0,63,789 0/0:44,1:45:99:0,99,1196 0/0:29,0:29:69.21:0,69,870 0/0:14,0:14:42.13:0,42,509 0/0:17,0:17:45.13:0,45,535 0/0:18,0:18:51.15:0,51,604 0/0:19,0:19:48.14:0,48,593 11 47434986 . G A 11362.23 . AC=28;AF=0.333;AN=84;BaseQRankSum=4.958;DP=1272;Dels=0.00;FS=20.437;HRun=0;HaplotypeScore=0.9228;InbreedingCoeff=-0.3976;MQ=58.09;MQ0=0;MQRankSum=-1.351;QD=14.31;ReadPosRankSum=-2.492 GT:AD:DP:GQ:PL 0/1:4,10:15:96.83:301,0,97 0/1:13,11:24:99:286,0,326 0/0:22,0:22:54.14:0,54,618 0/1:34,28:62:99:740,0,838 0/1:23,38:62:99:1055,0,567 0/1:25,19:44:99:428,0,622 0/1:23,19:42:99:550,0,616 1/1:0,43:44:99:1406,120,0 0/1:4,11:15:79.13:326,0,79 0/1:8,9:17:99:257,0,218 0/1:15,10:25:99:255,0,407 0/1:10,8:18:99:184,0,232 0/1:8,11:19:99:332,0,198 0/1:14,12:26:99:275,0,324 0/0:65,0:65:99:0,174,2015 0/0:25,0:25:75.18:0,75,820 0/0:11,0:11:21.06:0,21,242 0/0:23,0:23:57.12:0,57,624 0/0:39,0:39:96.24:0,96,1071 0/0:45,0:45:99:0,114,1344 0/1:22,15:37:99:390,0,509 0/1:24,13:38:99:254,0,585 0/1:22,38:61:99:1116,0,580 0/0:24,0:24:69.21:0,69,842 0/0:58,0:58:99:0,138,1732 0/0:44,0:44:99:0,111,1335 0/1:7,7:14:99:200,0,207 0/1:7,9:16:99:255,0,197 0/0:16,1:17:7.31:0,7,421 0/1:11,13:24:99:359,0,295 0/1:5,12:17:99:340,0,122 0/0:27,0:27:72.17:0,72,808 0/1:16,9:25:99:227,0,381 0/0:27,0:28:75.18:0,75,840 0/1:8,9:17:99:237,0,179 0/0:29,0:29:81.23:0,81,947 0/1:16,22:38:99:595,0,380 0/1:14,10:24:99:287,0,340 0/1:16,13:29:99:363,0,388 0/1:17,7:24:99:176,0,474 0/1:10,7:17:99:169,0,256 0/0:21,0:21:57.13:0,57,627 11 47460306 . A G 5363.98 . AC=61;AF=0.763;AN=80;BaseQRankSum=4.497;DP=241;Dels=0.00;FS=2.740;HRun=2;HaplotypeScore=0.2856;InbreedingCoeff=0.2651;MQ=57.96;MQ0=0;MQRankSum=-0.496;QD=27.23;ReadPosRankSum=-2.546 GT:AD:DP:GQ:PL 0/1:6,4:10:99:124,0,165 1/1:0,4:4:9.03:123,9,0 1/1:0,3:3:9.02:105,9,0 1/1:0,8:8:18.06:256,18,0 1/1:0,6:6:12.04:170,12,0 1/1:0,2:2:6.02:83,6,0 1/1:0,5:5:9.03:131,9,0 1/1:0,3:3:9.03:125,9,0 0/1:3,3:6:93.57:94,0,95 0/1:3,4:7:90.22:101,0,90 0/1:3,4:7:74.49:74,0,94 1/1:0,3:3:6.02:76,6,0 1/1:0,4:4:12.04:152,12,0 1/1:0,6:6:12.04:161,12,0 0/0:18,1:19:42.13:0,42,519 0/1:2,2:4:58.45:58,0,63 0/1:2,1:3:29.55:30,0,65 1/1:0,3:3:6.02:80,6,0 1/1:0,5:5:15.05:190,15,0 0/1:6,4:11:99:122,0,160 1/1:0,13:13:30.09:381,30,0 1/1:0,7:7:21.07:270,21,0 1/1:0,3:3:9.03:126,9,0 0/0:6,0:6:18.06:0,18,240 0/0:2,0:2:6.02:0,6,80 0/0:10,0:10:24.06:0,24,299 0/1:1,2:3:19.62:67,0,20 1/1:0,7:7:18.03:201,18,0 0/0:6,0:6:15.04:0,15,185 1/1:0,2:2:6.02:77,6,0 1/1:0,7:7:18.05:225,18,0 1/1:0,8:8:21.07:270,21,0 1/1:0,9:9:27.07:319,27,0 1/1:0,1:1:3.01:39,3,0 1/1:0,5:5:15.05:191,15,0 0/1:3,1:4:17.66:18,0,70 1/1:0,11:11:30.07:369,30,0 1/1:0,4:4:12.04:146,12,0 ./. 1/1:0,4:4:12.03:143,12,0 ./. 1/1:0,9:9:21.07:266,21,0 11 47591284 . G A 1245.78 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.877;DP=2359;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.5559;InbreedingCoeff=-0.0244;MQ=59.17;MQ0=0;MQRankSum=0.838;QD=12.46;ReadPosRankSum=-0.759 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,144,1809 0/0:50,0:50:99:0,138,1712 0/0:35,0:35:99:0,102,1279 0/0:112,0:112:99:0,307,4040 0/0:90,0:90:99:0,250,3357 0/0:61,0:61:99:0,153,2014 0/0:75,0:75:99:0,199,2678 0/0:66,0:66:99:0,181,2410 0/0:41,0:41:99:0,105,1306 0/0:46,0:46:99:0,117,1463 0/0:50,0:50:99:0,135,1715 0/0:37,0:37:96.26:0,96,1191 0/0:26,0:26:72.23:0,72,905 0/0:45,0:45:99:0,129,1587 0/0:147,0:147:99:0,367,4637 0/0:52,0:52:99:0,150,1870 0/0:58,0:58:99:0,147,1866 0/0:44,0:44:99:0,123,1555 0/0:62,0:63:99:0,165,1993 0/0:56,0:56:99:0,141,1795 0/0:57,0:57:99:0,150,1881 0/0:47,0:47:99:0,126,1545 0/0:86,0:86:99:0,244,3234 0/0:55,2:57:99:0,109,1908 0/0:62,0:62:99:0,169,2266 0/0:63,0:63:99:0,163,2165 0/0:33,0:33:87.27:0,87,1118 0/0:46,0:46:99:0,138,1702 0/0:36,0:36:99:0,108,1348 0/1:22,25:47:99:663,0,576 0/0:42,0:42:99:0,120,1533 0/0:77,0:77:99:0,196,2551 0/1:27,26:53:99:645,0,763 0/0:46,0:46:99:0,126,1578 0/0:48,0:48:99:0,123,1534 0/0:58,0:58:99:0,159,1921 0/0:55,1:56:99:0,104,1649 0/0:61,0:61:99:0,171,2099 0/0:47,0:47:99:0,123,1567 0/0:41,0:41:99:0,108,1376 0/0:34,0:34:93.29:0,93,1174 0/0:52,0:52:99:0,141,1769 11 47788663 . CGGTGGT C 507.34 . AC=12;AF=0.240;AN=50;BaseQRankSum=2.919;DP=62;FS=5.331;HRun=0;HaplotypeScore=12.9697;InbreedingCoeff=0.1934;MQ=53.87;MQ0=0;MQRankSum=-3.115;QD=21.14;ReadPosRankSum=0.613 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,105 ./. ./. ./.:.:1:.:0,0,0 0/1:4,1:5:59.53:60,0,198 1/1:0,2:2:6.02:137,6,0 0/0:2,0:2:3.01:0,3,63 0/0:1,0:1:3.01:0,3,104 ./. 0/0:1,0:1:3.01:0,3,105 ./.:.:1:.:0,0,0 ./. 1/1:0,1:1:3.01:69,3,0 ./. 0/1:2,2:4:99:106,0,197 ./. ./. ./. 0/0:3,0:3:9.03:0,9,275 0/0:4,0:4:6.01:0,6,61 0/0:3,0:3:6.02:0,6,209 0/0:2,0:2:3.01:0,3,104 0/1:3,2:5:81.52:82,0,197 0/0:1,0:1:3.01:0,3,105 0/0:3,0:3:9.03:0,9,312 0/0:2,0:2:6.02:0,6,209 1/1:1,1:2:3.01:69,3,0 ./. 0/0:1,0:1:3.01:0,3,105 0/0:2,0:2:6.02:0,6,209 0/0:2,0:2:6.02:0,6,190 ./. 1/1:0,1:1:3.01:69,3,0 ./. 0/0:2,0:2:3.01:0,3,105 ./. 0/0:6,0:6:15.05:0,15,405 0/0:2,0:2:6.02:0,6,206 ./. ./. 0/1:1,0:1:1.76:30,3,0 ./.:.:1:.:0,0,0 11 47788731 . G C 69.99 . AC=3;AF=0.041;AN=74;BaseQRankSum=-1.519;DP=108;Dels=0.00;FS=4.446;HRun=0;HaplotypeScore=0.3288;InbreedingCoeff=0.0371;MQ=57.27;MQ0=0;MQRankSum=0.456;QD=8.75;ReadPosRankSum=0.289 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,74 0/0:4,0:4:12.04:0,12,148 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.03:0,9,119 0/0:6,0:6:18.05:0,18,228 0/0:4,0:4:12.04:0,12,151 0/0:3,0:3:9:0,9,96 0/0:7,0:7:21.07:0,21,282 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6.02:0,6,74 0/0:1,0:1:3.01:0,3,36 ./. ./. 0/0:4,0:4:12.04:0,12,155 0/0:5,0:5:12.04:0,12,148 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.02:0,9,104 0/0:5,0:5:12.04:0,12,155 0/1:2,2:4:57.44:57,0,63 0/0:6,0:6:15.02:0,15,168 0/0:4,0:4:12.04:0,12,152 0/0:3,0:3:9.01:0,9,101 0/1:1,1:2:28.33:28,0,34 0/0:3,0:3:9.03:0,9,121 0/1:0,2:2:0.97:60,6,0 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,77 ./. 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,33 0/0:3,0:4:6.02:0,6,82 0/0:6,0:6:18.06:0,18,222 ./. 0/0:2,0:2:6.02:0,6,73 0/0:4,0:4:12.04:0,12,154 0/0:2,0:2:6.02:0,6,70 0/0:3,0:3:6.02:0,6,71 ./. 0/0:2,0:2:6.02:0,6,70 0/0:1,0:1:3:0,3,27 0/0:1,0:1:3.01:0,3,36 11 47833936 . C T 2663.96 . AC=2;AF=0.024;AN=84;BaseQRankSum=-11.115;DP=4115;DS;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=1.2578;InbreedingCoeff=-0.0244;MQ=59.54;MQ0=0;MQRankSum=1.477;QD=16.86;ReadPosRankSum=0.795 GT:AD:DP:GQ:PL 0/1:33,49:82:99:1435,0,956 0/0:86,0:86:99:0,244,3077 0/0:70,0:70:99:0,199,2499 0/0:169,0:169:99:0,494,6629 0/0:161,0:161:99:0,476,6462 0/0:141,0:141:99:0,397,5369 0/0:144,0:144:99:0,418,5686 0/0:156,0:156:99:0,451,6024 0/0:82,0:82:99:0,241,3054 0/1:34,42:76:99:1291,0,1014 0/0:87,0:87:99:0,235,3000 0/0:66,0:66:99:0,184,2352 0/0:53,0:54:99:0,153,1947 0/0:58,0:58:99:0,163,2075 0/0:213,0:213:99:0,593,7548 0/0:86,0:86:99:0,247,3059 0/0:72,0:72:99:0,208,2579 0/0:75,0:75:99:0,217,2756 0/0:109,0:109:99:0,304,3768 0/0:93,0:93:99:0,265,3372 0/0:118,0:118:99:0,307,3923 0/0:74,0:74:99:0,220,2808 0/0:164,0:164:99:0,464,6335 0/0:150,0:150:99:0,427,5727 0/0:167,0:167:99:0,482,6514 0/0:120,0:121:99:0,355,4786 0/0:58,0:58:99:0,169,2145 0/0:78,0:78:99:0,217,2762 0/0:55,0:55:99:0,153,1961 0/0:79,1:81:99:0,190,2812 0/0:86,1:88:99:0,233,3159 0/0:96,0:96:99:0,277,3523 0/0:72,0:72:99:0,196,2495 0/0:58,0:58:99:0,163,2053 0/0:84,0:84:99:0,241,3042 0/0:78,0:78:99:0,223,2790 0/0:97,0:97:99:0,277,3443 0/0:77,0:77:99:0,220,2760 0/0:68,0:68:99:0,202,2529 0/0:89,0:89:99:0,262,3287 0/0:73,1:74:99:0,180,2668 0/0:87,0:88:99:0,253,3237 11 47869489 . G C 215.32 . AC=10;AF=0.119;AN=84;BaseQRankSum=-11.520;DP=2060;Dels=0.00;FS=325.771;HRun=2;HaplotypeScore=1.7942;InbreedingCoeff=-0.1739;MQ=58.33;MQ0=0;MQRankSum=-0.615;QD=0.55;ReadPosRankSum=-10.037 GT:AD:DP:GQ:PL 0/0:27,11:38:6.90:0,7,546 0/0:18,4:22:39.09:0,39,422 0/0:18,5:23:1.13:5,0,361 0/0:68,30:98:7.18:0,7,1296 0/0:58,26:84:44.72:0,45,1024 0/0:52,16:70:13.61:0,14,970 0/0:32,9:41:28.34:0,28,572 0/0:45,16:61:50.88:0,51,860 0/0:34,7:41:57.29:0,57,808 0/0:30,9:39:4.88:0,5,571 0/1:23,13:36:33.89:34,0,351 0/0:25,2:28:60.11:0,60,657 0/0:26,5:31:23.49:0,23,509 0/0:27,9:36:1.84:3,0,536 0/0:91,43:134:70.76:0,71,2035 0/0:18,8:26:13.51:0,14,392 0/1:27,11:39:8.73:9,0,610 0/0:37,9:46:56.59:0,57,882 0/1:49,21:70:60.65:61,0,1043 0/0:73,18:93:99:0,147,1542 0/0:48,16:65:39.22:0,39,944 0/1:34,9:44:7.19:7,0,785 0/0:74,39:113:43.55:0,44,1405 0/0:38,12:50:69.14:0,69,764 0/0:36,17:54:60.11:0,60,680 0/0:34,8:42:34.76:0,35,670 0/1:18,12:30:66.50:66,0,312 0/0:32,10:43:1.46:4,0,476 0/1:23,8:31:6.26:6,0,512 0/1:21,10:31:13.72:14,0,448 0/1:27,12:39:34.39:34,0,644 0/0:54,16:70:96.54:0,97,1245 0/0:43,6:49:99:0,105,1144 0/0:23,10:33:48.06:0,48,489 0/1:26,8:36:64.61:65,0,480 0/0:28,10:38:17.26:0,17,482 0/0:49,11:60:11.71:0,12,1009 0/0:27,13:40:13.80:0,14,571 0/0:24,7:31:31.37:0,31,493 0/0:22,4:26:16.31:0,16,479 0/0:32,11:43:25.78:0,26,625 0/1:27,9:36:37.75:38,0,510 11 48146622 . G A 21517.23 . AC=16;AF=0.190;AN=84;BaseQRankSum=-15.093;DP=4217;DS;Dels=0.00;FS=35.231;HRun=1;HaplotypeScore=2.2376;InbreedingCoeff=-0.0809;MQ=59.43;MQ0=0;MQRankSum=-1.316;QD=15.95;ReadPosRankSum=-0.738 GT:AD:DP:GQ:PL 0/1:29,39:68:99:1158,0,741 0/0:47,1:48:94.08:0,94,1434 0/0:68,0:68:99:0,199,2361 0/0:246,0:246:99:0,719,9058 0/0:224,1:225:99:0,631,8391 0/0:174,0:174:99:0,493,6319 0/0:173,0:174:99:0,503,6453 0/0:192,0:193:99:0,554,7087 0/0:71,1:72:99:0,188,2482 0/0:54,2:56:99:0,124,1870 0/1:32,33:65:99:965,0,927 0/1:35,30:65:99:828,0,1061 0/1:25,23:48:99:698,0,701 0/1:30,36:66:99:1031,0,833 0/1:90,106:198:99:3039,0,2400 0/1:45,42:87:99:1213,0,1278 0/1:50,39:89:99:1135,0,1477 0/0:47,0:47:99:0,141,1660 0/1:59,54:113:99:1545,0,1695 0/1:50,58:108:99:1716,0,1405 0/0:86,1:87:99:0,211,2886 0/0:80,1:82:99:0,189,2651 0/0:245,0:245:99:0,719,9355 0/0:134,0:134:99:0,394,5088 0/0:149,0:149:99:0,436,5583 0/1:77,74:152:99:2100,0,2414 0/0:54,0:54:99:0,156,1899 0/0:66,0:66:99:0,193,2272 0/1:30,34:64:99:987,0,799 0/1:27,30:57:99:903,0,702 0/0:56,0:56:99:0,156,1891 0/0:104,0:104:99:0,295,3529 1/1:0,87:87:99:3048,256,0 0/0:52,0:52:99:0,144,1741 0/1:42,40:82:99:1152,0,1210 0/0:73,0:73:99:0,211,2532 0/0:96,0:97:99:0,280,3271 0/0:81,0:81:99:0,241,2850 0/0:72,0:72:99:0,211,2512 0/0:76,2:78:99:0,157,2602 0/0:67,0:67:99:0,193,2317 0/0:68,0:68:99:0,189,2224 11 48149478 . G A 3331.70 . 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C T 2286 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.190;DP=4880;DS;Dels=0.00;FS=3.674;HRun=1;HaplotypeScore=2.2683;InbreedingCoeff=-0.0244;MQ=59.30;MQ0=0;MQRankSum=1.523;QD=12.92;ReadPosRankSum=0.730 GT:AD:DP:GQ:PL 0/0:84,0:84:99:0,244,3032 0/0:112,0:112:99:0,301,3858 0/0:72,0:72:99:0,202,2582 0/0:208,0:208:99:0,584,7856 0/0:166,0:167:99:0,482,6509 0/0:170,0:170:99:0,467,6318 0/0:134,1:135:99:0,385,5221 0/0:131,0:131:99:0,382,5131 0/0:105,0:105:99:0,292,3758 0/0:86,0:86:99:0,247,3155 0/0:99,0:99:99:0,259,3345 0/0:90,0:90:99:0,247,3140 0/0:95,0:95:99:0,262,3373 0/0:93,1:94:99:0,265,3354 0/0:239,0:239:99:0,662,8436 0/0:79,0:79:99:0,223,2843 0/0:98,0:98:99:0,274,3494 0/0:95,0:95:99:0,271,3423 0/0:134,0:134:99:0,361,4626 0/0:136,0:136:99:0,373,4769 0/0:136,0:136:99:0,355,4551 0/0:87,1:88:99:0,244,3119 0/0:244,0:244:99:0,665,9101 0/0:149,0:149:99:0,406,5476 0/0:148,0:148:99:0,391,5361 0/1:56,47:103:99:1311,0,1806 0/0:80,0:80:99:0,220,2786 0/0:100,0:100:99:0,289,3651 0/1:39,35:74:99:1037,0,1169 0/0:85,0:85:99:0,235,2977 0/0:100,0:100:99:0,283,3583 0/0:141,0:141:99:0,388,4983 0/0:87,0:87:99:0,238,3054 0/0:101,0:101:99:0,289,3671 0/0:101,0:101:99:0,292,3736 0/0:106,0:106:99:0,283,3595 0/0:144,0:144:99:0,391,4985 0/0:100,0:101:99:0,280,3559 0/0:76,0:76:99:0,217,2722 0/0:93,0:93:99:0,259,3245 0/0:80,0:80:99:0,235,2970 0/0:114,0:114:99:0,313,3986 11 49204709 . C G 860.78 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.138;DP=2752;Dels=0.00;FS=3.315;HRun=1;HaplotypeScore=0.5275;InbreedingCoeff=-0.0244;MQ=54.01;MQ0=58;MQRankSum=-0.991;QD=8.04;ReadPosRankSum=-1.314 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,156,1961 0/0:45,0:45:99:0,126,1570 0/0:52,0:52:99:0,144,1790 0/0:101,0:101:99:0,277,3677 0/0:80,0:80:99:0,223,3017 0/0:81,0:81:99:0,232,3101 0/0:74,0:74:99:0,211,2784 0/0:91,0:91:99:0,265,3505 0/1:30,13:43:99:348,0,933 0/0:42,0:42:99:0,111,1407 0/1:40,24:64:99:575,0,1295 0/0:59,0:59:99:0,168,2068 0/0:50,0:50:99:0,132,1663 0/0:52,0:52:99:0,132,1646 0/0:173,0:173:99:0,454,5723 0/0:40,0:40:99:0,111,1390 0/0:58,0:58:99:0,159,1990 0/0:51,0:51:99:0,141,1764 0/0:77,0:77:99:0,205,2508 0/0:75,0:75:99:0,196,2461 0/0:80,0:80:99:0,214,2684 0/0:47,0:47:99:0,126,1578 0/0:96,0:97:99:0,262,3491 0/0:91,0:91:99:0,241,3218 0/0:86,0:86:99:0,226,2968 0/0:79,0:79:99:0,217,2894 0/0:37,0:37:99:0,102,1296 0/0:59,0:59:99:0,165,2047 0/0:36,0:36:99:0,108,1341 0/0:55,0:55:99:0,153,1918 0/0:43,0:43:99:0,120,1461 0/0:86,1:87:99:0,223,2815 0/0:63,0:63:99:0,181,2254 0/0:58,0:58:99:0,163,2029 0/0:51,0:51:99:0,144,1778 0/0:74,0:74:99:0,205,2520 0/0:72,0:72:99:0,184,2251 0/0:58,0:58:99:0,156,1965 0/0:60,1:61:99:0,145,2001 0/0:56,0:56:99:0,150,1872 0/0:43,0:43:99:0,123,1542 0/0:54,0:54:99:0,156,1926 11 49204779 . C T 134.76 . AC=6;AF=0.071;AN=84;BaseQRankSum=8.597;DP=3341;DS;Dels=0.00;FS=0.752;HRun=0;HaplotypeScore=0.8284;InbreedingCoeff=-0.0893;MQ=55.54;MQ0=57;MQRankSum=-13.148;QD=0.30;ReadPosRankSum=7.315 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,150,1663 0/0:75,1:76:99:0,183,2137 0/0:45,4:49:16.63:0,17,1292 0/0:133,7:140:99:0,232,4100 0/0:90,1:91:99:0,213,3003 0/0:101,0:101:99:0,274,3364 0/0:85,1:86:99:0,199,2864 0/0:98,0:98:99:0,268,3212 0/0:68,0:68:99:0,180,2036 0/0:64,0:64:99:0,165,1902 0/0:59,3:63:74.57:0,75,1783 0/1:63,7:71:13.79:14,0,1831 0/0:62,4:66:72.02:0,72,1751 0/1:62,11:73:21.48:21,0,1678 0/0:211,23:234:54.14:0,54,5750 0/0:42,0:42:99:0,117,1273 0/0:70,2:72:99:0,150,2005 0/0:49,0:49:99:0,129,1467 0/0:96,3:99:99:0,188,2811 0/1:89,15:104:94.35:94,0,2446 0/0:86,10:96:85.90:0,86,2500 0/0:54,3:57:54.17:0,54,1524 0/0:121,9:130:94.41:0,94,3597 0/0:97,6:103:99:0,144,2994 0/0:101,5:106:99:0,181,3390 0/0:85,6:91:99:0,124,2672 0/0:50,2:52:99:0,138,1585 0/0:59,1:60:99:0,159,1793 0/1:60,8:68:22.61:23,0,1610 0/0:56,1:57:99:0,131,1765 0/0:50,3:53:53.25:0,53,1487 0/0:87,13:100:0.55:9,0,2390 0/0:59,3:62:99:0,113,1637 0/0:51,8:59:13.49:0,13,1431 0/0:53,3:56:52.24:0,52,1498 0/1:62,8:70:22.46:22,0,1658 0/0:87,10:97:67.92:0,68,2507 0/0:60,3:63:78.45:0,78,1756 0/1:60,8:68:60.75:61,0,1652 0/0:63,3:66:96.19:0,96,1787 0/0:54,0:54:99:0,144,1646 0/0:69,4:73:99:0,103,2107 11 49204790 . A G 777.89 . AC=12;AF=0.143;AN=84;BaseQRankSum=2.294;DP=2927;DS;Dels=0.00;FS=0.758;HRun=0;HaplotypeScore=1.4126;InbreedingCoeff=-0.1668;MQ=55.68;MQ0=76;MQRankSum=-16.237;QD=0.79;ReadPosRankSum=7.386 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,111,1315 0/0:58,1:59:99:0,153,1867 0/1:44,7:52:47.85:48,0,1312 0/0:118,8:126:99:0,181,3552 0/0:82,1:83:99:0,193,2673 0/0:82,0:82:99:0,229,2831 0/0:77,0:77:99:0,214,2617 0/0:77,0:77:99:0,220,2670 0/0:58,0:58:99:0,159,1877 0/0:51,0:51:99:0,126,1552 0/0:57,6:63:21.30:0,21,1723 0/1:61,10:71:84.41:84,0,1863 0/0:50,5:55:39.33:0,39,1546 0/1:52,11:63:41.46:41,0,1533 0/1:184,27:212:99:118,0,5111 0/0:36,0:36:99:0,102,1189 0/0:49,2:51:73.29:0,73,1479 0/0:45,0:45:99:0,126,1510 0/0:83,8:91:51.13:0,51,2466 0/1:73,19:93:99:155,0,2117 0/0:71,11:82:43.82:0,44,2170 0/0:49,4:53:43.94:0,44,1421 0/1:99,16:115:71.49:71,0,2916 0/0:75,9:84:97.22:0,97,2330 0/0:84,9:94:99:0,100,2733 0/0:77,7:84:99:0,106,2454 0/0:40,1:41:99:0,114,1335 0/0:56,1:57:99:0,156,1886 0/1:52,9:61:88.18:88,0,1491 0/0:56,1:57:99:0,122,1823 0/0:42,5:47:33.50:0,33,1369 0/1:75,16:91:57.72:58,0,2100 0/0:46,4:50:95.41:0,95,1485 0/1:45,10:55:47.59:48,0,1290 0/1:41,7:48:99:100,0,1221 0/1:51,9:60:41.78:42,0,1575 0/0:70,9:79:27.95:0,28,2134 0/0:49,3:52:77.62:0,78,1558 0/1:54,9:63:69.81:70,0,1586 0/0:50,4:55:39.57:0,40,1505 0/0:50,0:50:99:0,132,1597 0/0:59,5:64:43.80:0,44,1875 11 49207315 . A G 9903.14 . AC=30;AF=0.357;AN=84;BaseQRankSum=3.886;DP=2652;Dels=0.00;FS=29.569;HRun=0;HaplotypeScore=0.8557;InbreedingCoeff=0.0667;MQ=45.26;MQ0=219;MQRankSum=-25.710;QD=7.61;ReadPosRankSum=-2.355 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,162,1924 0/0:67,1:68:99:0,187,2222 0/0:43,0:43:99:0,117,1350 0/0:137,0:137:99:0,388,4638 0/0:126,0:126:99:0,358,4295 1/1:0,66:66:99:1185,111,0 0/1:43,25:68:99:309,0,1225 0/1:46,26:72:99:337,0,1359 0/1:25,14:39:99:153,0,694 1/1:0,21:21:36.09:390,36,0 0/0:58,0:58:99:0,156,1812 1/1:0,30:30:60.15:651,60,0 0/1:23,15:38:99:162,0,648 0/1:28,24:52:99:334,0,749 0/1:103,62:166:99:729,0,2725 1/1:0,22:22:57.13:609,57,0 0/0:53,0:53:99:0,144,1687 0/0:47,1:48:99:0,123,1454 0/0:90,0:90:99:0,226,2710 0/1:49,25:74:99:271,0,1442 0/1:46,23:69:99:370,0,1226 0/0:64,0:64:99:0,156,1916 0/0:127,0:127:99:0,364,4362 1/1:0,58:58:99:1148,105,0 0/1:36,28:65:99:408,0,1026 1/1:0,41:41:84.18:894,84,0 0/1:18,9:27:91.26:91,0,505 0/1:40,24:64:99:340,0,1117 0/1:15,10:25:71.91:72,0,436 0/0:58,0:58:99:0,153,1787 0/1:32,19:51:99:272,0,829 0/1:53,31:84:99:320,0,1419 0/1:27,11:38:75.99:76,0,790 0/0:61,1:62:99:0,171,1990 0/0:69,0:69:99:0,183,2168 0/1:20,23:43:99:276,0,571 0/0:90,0:90:99:0,238,2814 0/0:69,1:70:99:0,189,2184 0/0:54,0:54:99:0,141,1689 0/1:27,19:46:99:241,0,683 0/1:23,20:43:99:263,0,662 0/0:73,0:73:99:0,199,2328 11 49221885 . T A 10595.94 . AC=30;AF=0.357;AN=84;BaseQRankSum=17.064;DP=1404;Dels=0.00;FS=94.054;HRun=0;HaplotypeScore=0.5277;InbreedingCoeff=0.0666;MQ=47.89;MQ0=114;MQRankSum=-21.796;QD=13.24;ReadPosRankSum=1.367 GT:AD:DP:GQ:PL 0/0:27,0:27:75.21:0,75,870 0/0:28,1:29:84.25:0,84,989 0/0:29,1:30:84.25:0,84,994 0/0:68,0:68:99:0,202,2377 0/0:58,0:58:99:0,165,1978 1/1:0,60:60:99:1794,156,0 0/1:20,15:35:99:305,0,623 0/1:20,27:47:99:371,0,599 0/1:12,15:27:99:121,0,335 1/1:0,15:15:36.09:412,36,0 0/0:22,0:22:63.19:0,63,740 1/1:0,20:20:45.10:500,45,0 0/1:10,9:19:99:163,0,307 0/1:16,11:27:99:173,0,476 0/1:49,39:88:99:579,0,1432 1/1:0,21:21:45.08:473,45,0 0/0:24,1:25:69.20:0,69,811 0/0:24,5:29:66.20:0,66,794 0/0:45,6:51:99:0,126,1538 0/1:23,15:38:99:274,0,677 0/1:35,15:50:99:278,0,1014 0/0:20,0:20:57.17:0,57,674 0/0:62,0:62:99:0,181,2124 1/1:0,51:51:99:1331,117,0 0/1:25,25:50:99:463,0,731 1/1:1,52:53:94.02:1382,94,0 0/1:12,7:20:99:140,0,364 0/1:10,11:21:99:226,0,280 0/1:11,8:19:99:200,0,333 0/0:26,3:29:51.55:0,52,866 0/1:9,5:14:90.01:90,0,288 0/1:18,17:35:99:303,0,431 0/1:8,12:20:99:277,0,205 0/0:19,0:19:51.15:0,51,608 0/0:25,2:27:72.22:0,72,861 0/1:8,12:20:99:179,0,229 0/0:26,0:26:72.20:0,72,851 0/0:29,4:33:87.26:0,87,1015 0/0:19,0:19:51.15:0,51,616 0/1:7,18:25:99:414,0,160 0/1:13,12:25:99:148,0,394 0/0:30,0:30:84.26:0,84,1021 11 57069375 . A G 3892.39 . AC=5;AF=0.060;AN=84;BaseQRankSum=2.225;DP=2539;Dels=0.00;FS=3.935;HRun=0;HaplotypeScore=2.5686;InbreedingCoeff=0.3620;MQ=59.25;MQ0=0;MQRankSum=0.677;QD=18.45;ReadPosRankSum=-1.749 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,135,1542 0/0:52,0:52:99:0,150,1739 0/0:48,0:48:99:0,132,1515 0/0:86,0:86:99:0,244,2884 0/0:104,0:106:99:0,295,3478 0/0:64,1:65:99:0,186,2209 0/0:58,0:58:99:0,153,1812 0/0:81,0:82:99:0,235,2720 0/0:48,0:49:99:0,117,1345 0/0:51,0:51:99:0,144,1648 0/0:43,0:43:99:0,120,1396 0/0:44,0:44:99:0,117,1344 0/0:37,0:37:99:0,108,1262 0/0:38,0:38:99:0,111,1277 0/0:138,0:140:99:0,364,4228 0/0:51,0:53:99:0,144,1709 0/0:45,0:46:99:0,123,1411 0/0:43,0:43:99:0,129,1500 0/0:74,0:76:99:0,205,2373 0/0:84,0:85:99:0,226,2700 0/0:81,0:87:99:0,226,2637 0/0:61,0:61:99:0,174,2044 0/0:116,0:116:99:0,337,3956 1/1:0,50:50:99:1674,135,0 0/1:34,27:61:99:756,0,971 0/1:26,26:52:99:721,0,732 0/0:39,0:39:99:0,108,1261 0/0:58,0:58:99:0,165,1954 0/0:41,0:41:99:0,114,1356 0/0:48,0:50:99:0,132,1550 0/0:42,0:43:99:0,120,1431 0/0:86,0:87:99:0,229,2681 0/0:60,0:60:99:0,162,1934 0/0:51,0:51:99:0,135,1604 0/0:44,0:45:99:0,129,1447 0/1:19,29:48:99:741,0,429 0/0:97,0:98:99:0,256,2965 0/0:49,0:49:99:0,135,1574 0/0:49,0:49:99:0,135,1568 0/0:59,0:61:99:0,159,1855 0/0:38,0:39:99:0,105,1227 0/0:43,0:45:99:0,126,1439 11 57069568 . T C 10076.40 . AC=5;AF=0.060;AN=84;BaseQRankSum=0.846;DP=5901;DS;Dels=0.00;FS=9.432;HRun=0;HaplotypeScore=4.7770;InbreedingCoeff=0.3620;MQ=59.42;MQ0=1;MQRankSum=1.146;QD=16.79;ReadPosRankSum=2.948 GT:AD:DP:GQ:PL 0/0:134,1:135:99:0,340,4047 0/0:114,0:114:99:0,319,3786 0/0:126,0:128:99:0,337,3949 0/0:199,1:200:99:0,494,6225 0/0:206,1:207:99:0,545,6522 0/0:192,0:195:99:0,505,6200 0/0:158,0:158:99:0,406,4928 0/0:154,0:157:99:0,406,4867 0/0:121,0:121:99:0,322,3795 0/0:109,1:112:99:0,289,3348 0/0:109,1:112:99:0,304,3565 0/0:134,0:134:99:0,349,4133 0/0:97,0:98:99:0,271,3212 0/0:136,0:136:99:0,367,4305 0/0:180,0:186:99:0,457,5067 0/0:119,0:119:99:0,319,3768 0/0:97,0:98:99:0,265,3116 0/0:97,0:98:99:0,265,3125 0/0:178,1:182:99:0,454,5382 0/0:211,0:215:99:0,532,6384 0/0:187,1:188:99:0,490,5800 0/0:125,0:125:99:0,346,3960 0/0:195,0:195:99:0,530,6320 1/1:0,154:154:99:4771,397,0 0/1:97,90:189:99:2429,0,2573 0/1:79,50:130:99:1274,0,2228 0/0:93,0:94:99:0,259,3014 0/0:127,0:127:99:0,352,4156 0/0:125,0:126:99:0,334,4009 0/0:130,0:130:99:0,343,4040 0/0:117,2:119:99:0,295,3790 0/0:199,1:203:99:0,514,6189 0/0:147,0:148:99:0,397,4642 0/0:126,0:126:99:0,328,3946 0/0:106,0:106:99:0,286,3370 0/1:62,64:127:99:1603,0,1670 0/0:156,1:157:99:0,353,4552 0/0:132,0:135:99:0,355,4178 0/0:97,0:99:99:0,250,2975 0/0:115,0:116:99:0,322,3747 0/0:106,0:107:99:0,298,3549 0/0:95,0:95:99:0,268,3134 11 57177593 . A G 949.91 . AC=5;AF=0.060;AN=84;BaseQRankSum=7.590;DP=621;Dels=0.00;FS=3.041;HRun=0;HaplotypeScore=0.4124;InbreedingCoeff=-0.0601;MQ=58.60;MQ0=0;MQRankSum=-0.524;QD=16.10;ReadPosRankSum=1.128 GT:AD:DP:GQ:PL 0/0:11,1:12:1.95:2,0,351 0/1:3,3:7:89.46:92,0,89 0/0:11,0:11:27.08:0,27,330 0/1:10,12:22:99:417,0,282 0/1:8,3:11:89.37:89,0,247 0/0:14,0:14:42.13:0,42,523 0/0:17,0:17:42.13:0,42,513 0/0:12,0:12:36.10:0,36,417 0/0:14,0:14:39.11:0,39,454 0/0:10,0:10:30.09:0,30,351 0/0:7,0:7:21.06:0,21,245 0/0:14,0:14:39.11:0,39,456 0/0:14,0:14:42.12:0,42,486 0/0:22,0:22:57.17:0,57,703 0/0:49,0:49:99:0,132,1586 0/0:9,0:9:24.07:0,24,297 0/0:13,0:13:39.11:0,39,449 0/0:10,0:10:30.08:0,30,345 0/0:19,0:20:54.16:0,54,636 0/0:33,0:33:87.26:0,87,1051 0/0:15,0:15:45.14:0,45,536 0/0:15,0:15:45.14:0,45,535 0/0:12,0:12:33.10:0,33,398 0/0:13,0:13:33.09:0,33,399 0/0:12,0:12:33.10:0,33,406 0/0:13,0:13:36.11:0,36,441 0/0:14,0:14:36.10:0,36,440 0/0:11,0:11:30.09:0,30,364 0/0:17,0:17:51.15:0,51,594 0/0:16,0:16:42.13:0,42,515 0/0:13,0:13:39.11:0,39,453 0/0:21,1:22:57.17:0,57,692 0/1:1,8:9:14.50:248,0,14 0/0:17,0:17:48.14:0,48,570 0/0:17,0:17:51.15:0,51,602 0/0:15,0:15:42.13:0,42,501 0/0:20,0:20:57.13:0,57,659 0/0:9,0:9:24.06:0,24,277 0/1:4,6:10:99:199,0,112 0/0:14,0:14:42.12:0,42,489 0/0:6,0:6:18.05:0,18,211 0/0:10,0:10:30.09:0,30,350 11 57254619 . C G 39.88 . AC=5;AF=0.060;AN=84;BaseQRankSum=-10.215;DP=1344;Dels=0.00;FS=365.493;HRun=1;HaplotypeScore=0.6983;InbreedingCoeff=-0.0933;MQ=57.63;MQ0=0;MQRankSum=0.990;QD=0.33;ReadPosRankSum=-8.775 GT:AD:DP:GQ:PL 0/0:11,16:27:29.76:0,30,331 0/0:16,10:26:5.52:0,6,383 0/0:15,4:19:39.11:0,39,480 0/0:38,16:55:47.30:0,47,1320 0/0:41,20:61:99:0,117,1572 0/0:28,8:36:69.22:0,69,924 0/0:21,12:33:57.16:0,57,737 0/0:23,10:33:27.94:0,28,730 0/0:23,8:32:60.16:0,60,729 0/0:20,7:27:54.16:0,54,664 0/1:19,6:25:13.44:13,0,450 0/0:20,9:29:48.15:0,48,606 0/0:19,8:27:0.20:0,0,582 0/0:18,1:19:39.12:0,39,498 0/0:67,24:91:99:0,131,2293 0/0:21,6:27:27.54:0,28,640 0/0:23,9:32:33.44:0,33,694 0/1:14,11:25:27.95:28,0,307 0/1:24,8:32:26.27:26,0,713 0/0:38,9:47:93.26:0,93,1141 0/0:25,5:30:33.16:0,33,729 0/0:15,3:18:36.12:0,36,466 0/0:40,15:55:86.66:0,87,1401 0/0:27,11:38:71.59:0,72,926 0/0:20,11:31:48.09:0,48,636 0/0:18,8:26:40.67:0,41,514 0/0:9,4:13:21.07:0,21,267 0/0:15,4:19:39.12:0,39,484 0/1:15,4:19:33.02:33,0,386 0/0:14,8:22:12.50:0,12,440 0/1:10,11:21:31.09:31,0,264 0/0:53,9:62:99:0,102,1508 0/0:21,8:29:36.52:0,37,739 0/0:21,11:32:2.20:2,0,632 0/0:13,2:15:36.11:0,36,437 0/0:27,10:37:75.23:0,75,946 0/0:34,14:48:38.03:0,38,1075 0/0:21,9:30:22.80:0,23,617 0/0:16,4:20:39.12:0,39,486 0/0:15,7:22:39.12:0,39,494 0/0:14,13:27:12.28:0,12,379 0/0:22,5:27:1.07:6,0,630 11 57268686 . T G 728.22 . AC=18;AF=0.214;AN=84;BaseQRankSum=-26.038;DP=3219;Dels=0.00;FS=737.279;HRun=3;HaplotypeScore=2.6728;InbreedingCoeff=-0.2795;MQ=58.65;MQ0=0;MQRankSum=-1.041;QD=0.55;ReadPosRankSum=-13.161 GT:AD:DP:GQ:PL 0/1:41,29:70:99:114,0,1183 0/0:40,25:65:50.88:0,51,1089 0/0:42,25:70:41.54:0,42,1201 0/1:83,64:147:21.76:22,0,2126 0/1:70,62:134:37.11:37,0,1834 0/1:45,33:80:45.34:45,0,1247 0/0:49,37:86:60.09:0,60,1428 0/0:49,46:97:12.18:0,12,1280 0/1:29,25:54:51.97:52,0,655 0/0:45,18:63:47.93:0,48,1242 0/1:28,11:39:17.14:17,0,792 0/0:35,17:52:36.17:0,36,969 0/0:27,12:39:45.22:0,45,773 0/0:32,29:62:34.74:0,35,927 0/0:110,61:173:99:0,164,3013 0/1:37,33:70:11.68:12,0,996 0/0:44,23:68:64.27:0,64,1239 0/1:30,16:46:19.66:20,0,933 0/1:49,39:88:99:166,0,1293 0/0:85,38:124:99:0,170,2362 0/1:73,61:135:44.57:45,0,1889 0/0:46,25:71:99:0,101,1403 0/0:90,78:170:81.77:0,82,2490 0/0:38,31:69:18.14:0,18,1023 0/0:48,33:82:59.78:0,60,1379 0/0:38,30:69:72.62:0,73,1132 0/0:24,12:36:24.80:0,25,732 0/0:27,19:46:27.84:0,28,731 0/1:26,19:45:13.90:14,0,765 0/0:39,16:55:35.26:0,35,1110 0/1:28,22:51:11.56:12,0,740 0/0:87,31:120:99:0,200,2651 0/0:46,46:92:12.89:0,13,1170 0/0:28,18:47:1.87:3,0,730 0/1:20,19:39:48.05:48,0,427 0/1:38,38:76:34.52:35,0,974 0/1:57,43:100:65.85:66,0,1593 0/1:29,30:59:99:162,0,866 0/0:37,33:71:24.24:0,24,967 0/1:32,22:54:17.69:18,0,875 0/1:27,21:49:5.65:6,0,788 0/0:29,26:56:23.91:0,24,818 11 57381989 . G A 9019.75 . AC=16;AF=0.190;AN=84;BaseQRankSum=-0.268;DP=1498;Dels=0.00;FS=3.369;HRun=0;HaplotypeScore=0.5464;InbreedingCoeff=0.0734;MQ=59.04;MQ0=0;MQRankSum=-0.128;QD=15.44;ReadPosRankSum=-0.745 GT:AD:DP:GQ:PL 0/0:23,1:24:28.39:0,28,717 0/0:21,0:21:57.16:0,57,660 0/1:9,14:23:99:431,0,246 0/1:33,33:66:99:929,0,1032 0/0:53,0:53:99:0,153,1955 0/1:25,27:52:99:814,0,769 1/1:0,48:48:99:1707,141,0 0/0:49,0:49:99:0,138,1754 0/1:8,13:21:99:378,0,229 0/0:28,0:28:78.22:0,78,928 1/1:0,14:14:39.12:469,39,0 0/0:17,0:17:51.14:0,51,585 0/0:26,0:26:75.17:0,75,849 0/1:24,10:34:99:213,0,699 0/1:54,39:93:99:1037,0,1338 0/1:14,23:37:99:675,0,384 0/0:20,1:21:24.53:0,25,573 0/0:32,0:32:90.23:0,90,1024 0/0:36,0:36:99:0,102,1197 0/1:26,16:42:99:425,0,744 0/0:42,1:43:99:0,108,1275 0/0:26,0:26:69.19:0,69,801 0/1:46,33:79:99:886,0,1401 0/0:47,0:47:99:0,132,1707 0/0:50,0:50:99:0,141,1809 0/0:41,0:41:99:0,114,1463 0/0:24,0:24:72.18:0,72,819 0/0:29,0:29:81.24:0,81,962 0/0:19,0:19:54.16:0,54,644 0/0:37,0:37:96.28:0,96,1157 0/0:31,0:31:93.24:0,93,1070 0/0:65,0:65:99:0,168,2028 0/0:32,0:32:84.24:0,84,998 0/0:21,0:21:60.18:0,60,710 0/0:28,0:28:81.20:0,81,910 0/1:12,5:17:99:133,0,331 0/1:16,19:35:99:532,0,435 0/0:26,0:26:72.20:0,72,842 0/1:10,13:23:99:388,0,229 0/0:32,0:32:93.27:0,93,1092 0/0:19,0:19:51.13:0,51,558 0/0:37,0:37:99:0,105,1234 11 57449922 . C G 3822.38 . AC=2;AF=0.024;AN=84;BaseQRankSum=11.179;DP=3136;Dels=0.00;FS=6.752;HRun=0;HaplotypeScore=1.3229;InbreedingCoeff=-0.0244;MQ=59.32;MQ0=0;MQRankSum=1.213;QD=16.33;ReadPosRankSum=1.099 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,147,1825 0/0:52,0:52:99:0,147,1799 0/0:58,0:58:99:0,166,2095 0/0:133,0:133:99:0,370,4869 0/0:133,0:133:99:0,373,4937 0/0:149,0:149:99:0,412,5431 0/0:103,0:103:99:0,286,3795 0/0:112,0:112:99:0,307,4056 0/0:50,0:50:99:0,138,1716 0/0:53,0:53:99:0,150,1876 0/0:57,0:57:99:0,165,2044 0/0:56,0:56:99:0,159,1968 0/0:35,0:35:90.28:0,90,1119 0/0:52,0:52:99:0,144,1810 0/0:217,0:217:99:0,581,7187 0/0:45,0:45:99:0,126,1591 0/0:58,0:58:99:0,172,2099 0/0:45,0:46:99:0,123,1524 0/0:89,0:89:99:0,253,3066 0/0:77,0:77:99:0,217,2695 0/0:81,0:81:99:0,223,2725 0/0:38,0:38:99:0,105,1320 0/0:162,0:162:99:0,454,5997 0/1:60,61:121:99:1876,0,1762 0/0:126,0:126:99:0,340,4607 0/1:53,60:113:99:1946,0,1548 0/0:35,0:35:99:0,99,1239 0/0:56,0:56:99:0,156,1937 0/0:49,0:49:99:0,135,1736 0/0:48,0:48:99:0,132,1600 0/0:47,0:47:99:0,129,1605 0/0:73,0:73:99:0,208,2554 0/0:43,0:43:99:0,123,1533 0/0:70,0:70:99:0,202,2497 0/0:48,0:48:99:0,144,1778 0/0:58,0:58:99:0,159,1952 0/0:62,0:62:99:0,175,2116 0/0:78,0:78:99:0,214,2673 0/0:36,0:36:99:0,105,1305 0/0:58,0:58:99:0,168,2024 0/0:54,0:54:99:0,156,1932 0/0:52,0:52:99:0,135,1732 11 57464253 . G A 1007.50 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.366;DP=2449;Dels=0.00;FS=18.191;HRun=1;HaplotypeScore=1.6888;InbreedingCoeff=-0.0244;MQ=58.60;MQ0=0;MQRankSum=0.944;QD=13.26;ReadPosRankSum=-1.793 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,114,1394 0/0:36,0:36:96.29:0,96,1189 0/0:41,0:41:99:0,102,1339 0/0:98,0:99:99:0,256,3349 0/0:85,0:85:99:0,229,2976 0/0:67,0:67:99:0,168,2184 0/0:62,0:62:99:0,175,2314 0/0:74,0:74:99:0,184,2436 0/0:41,0:41:99:0,108,1360 0/0:37,0:37:93.29:0,93,1202 0/0:48,0:48:99:0,123,1590 0/1:22,18:40:99:453,0,625 0/1:13,23:36:99:617,0,336 0/0:46,0:46:99:0,117,1480 0/0:162,0:162:99:0,391,4953 0/0:47,0:47:99:0,117,1453 0/0:55,0:55:99:0,147,1849 0/0:65,0:65:99:0,178,2255 0/0:97,0:97:99:0,247,3026 0/0:84,0:84:99:0,208,2699 0/0:75,0:75:99:0,184,2274 0/0:65,0:65:99:0,168,2123 0/0:93,0:93:99:0,253,3381 0/0:43,0:43:99:0,105,1380 0/0:59,0:59:99:0,163,2196 0/0:74,0:74:99:0,190,2529 0/0:39,0:39:96.28:0,96,1185 0/0:48,0:48:99:0,132,1636 0/0:47,0:47:99:0,120,1559 0/0:48,0:48:99:0,135,1676 0/0:43,0:43:99:0,120,1505 0/0:76,0:76:99:0,184,2381 0/0:51,0:51:99:0,132,1696 0/0:36,0:36:99:0,105,1288 0/0:39,0:39:99:0,105,1291 0/0:51,0:51:99:0,138,1745 0/0:58,0:59:99:0,162,1978 0/0:42,0:42:99:0,108,1369 0/0:55,0:55:99:0,141,1758 0/0:51,0:51:99:0,141,1768 0/0:41,0:41:99:0,105,1344 0/0:47,0:47:99:0,126,1541 11 57480270 . C G 924.21 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.873;DP=1865;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.5198;InbreedingCoeff=-0.0244;MQ=58.94;MQ0=0;MQRankSum=0.924;QD=14.44;ReadPosRankSum=0.649 GT:AD:DP:GQ:PL 0/0:32,0:32:93.28:0,93,1147 0/0:27,0:27:72.23:0,72,924 0/0:25,0:25:75.24:0,75,950 0/0:80,0:80:99:0,217,2885 0/0:63,0:63:99:0,175,2319 0/0:57,0:57:99:0,157,2102 0/0:38,0:38:99:0,108,1429 0/0:41,0:41:99:0,105,1405 0/0:49,0:49:99:0,135,1695 0/0:24,0:24:69.21:0,69,860 0/0:23,0:23:69.21:0,69,848 0/0:26,0:26:75.23:0,75,934 0/0:24,1:25:66.20:0,66,832 0/0:32,0:32:93.30:0,93,1186 0/0:129,0:129:99:0,331,4138 0/0:28,0:28:81.26:0,81,1021 0/0:44,0:44:99:0,126,1570 0/0:30,0:30:90.28:0,90,1121 0/0:66,0:66:99:0,169,2118 0/0:76,0:76:99:0,214,2665 0/0:66,0:66:99:0,184,2265 0/0:43,0:43:99:0,114,1425 0/0:92,0:92:99:0,247,3319 0/0:32,0:32:96.28:0,96,1269 0/0:40,0:40:99:0,111,1476 0/0:42,0:42:99:0,120,1612 0/1:11,18:29:99:567,0,330 0/1:18,17:35:99:419,0,547 0/0:33,0:33:93.27:0,93,1175 0/0:35,0:35:99:0,99,1228 0/0:30,0:30:90.24:0,90,1085 0/0:81,0:81:99:0,205,2651 0/0:43,0:43:99:0,126,1582 0/0:37,0:37:96.30:0,96,1200 0/0:42,0:42:99:0,111,1386 0/0:47,0:47:99:0,126,1594 0/0:58,0:58:99:0,156,1947 0/0:31,0:31:90.26:0,90,1094 0/0:27,0:27:72.23:0,72,911 0/0:44,0:44:99:0,126,1559 0/0:26,0:26:66.21:0,66,845 0/0:36,0:37:96.26:0,96,1178 11 57509599 . C T 82.52 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.763;DP=818;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.4025;InbreedingCoeff=-0.0137;MQ=59.19;MQ0=0;MQRankSum=0.893;QD=5.16;ReadPosRankSum=-1.405 GT:AD:DP:GQ:PL 0/0:18,0:18:51.16:0,51,656 0/0:16,0:16:45.14:0,45,574 0/1:11,5:16:99:129,0,364 0/0:24,0:24:60.20:0,60,816 0/0:19,0:19:57.19:0,57,769 0/0:20,0:20:48.16:0,48,668 0/0:17,0:17:42.13:0,42,556 0/0:12,0:12:30.10:0,30,422 0/0:18,0:18:51.15:0,51,632 0/0:15,0:15:42.11:0,42,505 0/0:15,0:15:42.12:0,42,521 0/0:12,0:12:33.10:0,33,420 0/0:8,0:8:24.07:0,24,300 0/0:12,0:12:36.10:0,36,443 0/0:57,0:57:99:0,147,1906 0/0:10,0:10:27.09:0,27,341 0/0:16,0:16:45.14:0,45,572 0/0:20,0:20:54.17:0,54,680 0/0:35,0:36:87.25:0,87,1106 0/0:40,0:40:96.31:0,96,1281 0/0:22,0:22:57.16:0,57,713 0/0:26,0:26:66.21:0,66,854 0/0:21,0:21:60.20:0,60,813 0/0:13,0:13:39.13:0,39,535 0/0:16,0:16:42.14:0,42,574 0/0:4,0:4:9.03:0,9,127 0/0:6,0:6:18.05:0,18,218 0/0:15,0:15:45.14:0,45,553 0/0:16,0:16:48.14:0,48,600 0/0:16,0:16:42.13:0,42,542 0/0:12,0:12:33.11:0,33,430 0/0:30,0:30:75.24:0,75,986 0/0:33,0:33:87.28:0,87,1121 0/0:18,0:18:45.13:0,45,572 0/0:13,0:13:39.12:0,39,494 0/0:25,0:25:72.23:0,72,913 0/0:35,0:35:87.26:0,87,1106 0/0:11,0:11:33.10:0,33,416 0/0:21,0:21:54.17:0,54,690 0/0:15,0:15:45.13:0,45,549 0/0:23,0:23:63.20:0,63,815 0/0:26,0:26:78.25:0,78,990 11 58378422 . G A 510.26 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.663;DP=2341;Dels=0.00;FS=1.383;HRun=1;HaplotypeScore=1.0812;InbreedingCoeff=-0.0120;MQ=59.36;MQ0=0;MQRankSum=-0.463;QD=15.46;ReadPosRankSum=-0.784 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,126,1604 0/0:44,0:44:99:0,132,1672 0/0:45,0:46:99:0,129,1665 0/0:77,0:77:99:0,217,2969 0/0:63,0:63:99:0,181,2489 0/0:78,0:78:99:0,220,3032 0/0:78,0:79:99:0,217,2976 0/0:55,0:55:99:0,163,2224 0/0:34,0:34:99:0,99,1278 0/0:50,0:50:99:0,132,1700 0/0:48,0:48:99:0,135,1731 0/0:40,0:40:99:0,120,1515 0/0:57,0:57:99:0,166,2133 0/0:39,0:39:99:0,117,1495 0/0:175,0:175:99:0,469,6098 0/0:34,0:34:99:0,99,1266 0/0:50,0:50:99:0,147,1884 0/0:64,0:65:99:0,184,2343 0/0:70,0:70:99:0,196,2517 0/0:63,0:63:99:0,181,2318 0/0:58,0:58:99:0,160,2045 0/1:13,20:33:99:556,0,417 0/0:78,0:78:99:0,229,3162 0/0:73,0:73:99:0,199,2747 0/0:62,0:62:99:0,175,2398 0/0:60,0:60:99:0,172,2325 0/0:34,0:34:99:0,99,1272 0/0:56,0:56:99:0,163,2082 0/0:51,0:51:99:0,144,1786 0/0:42,0:42:99:0,120,1538 0/0:47,0:47:99:0,132,1717 0/0:75,0:75:99:0,208,2676 0/0:39,0:39:99:0,114,1454 0/0:58,0:58:99:0,169,2164 0/0:30,0:30:78.25:0,78,1016 0/0:43,0:43:99:0,129,1663 0/0:65,0:65:99:0,187,2361 0/0:47,0:47:99:0,129,1675 0/0:41,0:41:99:0,123,1568 0/0:51,0:51:99:0,144,1827 0/0:41,0:41:99:0,117,1496 0/0:48,0:48:99:0,138,1787 11 58378424 . A G 27193.16 . AC=27;AF=0.321;AN=84;BaseQRankSum=31.288;DP=2434;Dels=0.00;FS=19.936;HRun=1;HaplotypeScore=1.1054;InbreedingCoeff=-0.0370;MQ=59.39;MQ0=0;MQRankSum=0.986;QD=20.42;ReadPosRankSum=-0.799 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,129,1513 0/0:45,0:45:99:0,135,1573 0/0:47,0:47:99:0,135,1596 0/0:82,0:83:99:0,232,2780 0/1:30,32:62:99:1065,0,842 0/0:83,0:83:99:0,229,2812 0/0:79,0:79:99:0,220,2701 0/0:57,0:57:99:0,169,2011 0/1:20,14:34:99:440,0,586 0/1:24,30:54:99:927,0,631 0/1:26,22:49:99:605,0,774 0/0:39,0:39:99:0,117,1374 0/0:58,0:58:99:0,169,2002 0/0:41,0:41:99:0,123,1462 1/1:0,180:180:99:6204,476,0 0/1:17,20:37:99:660,0,447 0/1:27,24:51:99:741,0,789 0/1:32,34:66:99:1073,0,865 0/1:36,39:75:99:1225,0,982 0/0:66,0:66:99:0,190,2262 0/1:38,27:65:99:796,0,1079 0/0:34,0:34:93.26:0,93,1101 0/0:85,0:85:99:0,244,2915 0/0:77,0:77:99:0,208,2530 0/1:32,33:65:99:1167,0,873 0/0:58,0:58:99:0,168,2011 0/1:17,18:35:99:589,0,484 0/0:57,1:58:99:0,128,1881 0/1:23,31:54:99:961,0,577 1/1:0,45:45:99:1651,129,0 0/1:27,20:47:99:647,0,745 0/1:41,36:77:99:1047,0,1204 0/1:25,15:40:99:455,0,725 1/1:1,60:61:99:2224,175,0 0/1:17,16:33:99:473,0,452 1/1:0,44:44:99:1699,132,0 0/1:35,30:65:99:890,0,1020 0/0:50,0:50:99:0,135,1627 0/1:20,24:44:99:781,0,564 0/0:53,0:53:99:0,150,1771 0/0:45,0:45:99:0,129,1505 0/1:21,28:49:99:873,0,593 11 58379197 . G A 372.62 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.470;DP=1620;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.4524;InbreedingCoeff=-0.0120;MQ=59.27;MQ0=0;MQRankSum=1.785;QD=14.90;ReadPosRankSum=-2.092 GT:AD:DP:GQ:PL 0/0:31,0:31:87.26:0,87,1105 0/0:35,0:35:99:0,99,1252 0/0:36,0:36:99:0,102,1288 0/0:61,0:61:99:0,181,2418 0/0:43,0:43:99:0,129,1754 0/0:66,0:66:99:0,184,2478 0/0:38,0:38:99:0,111,1523 0/0:42,0:42:99:0,120,1640 0/0:38,0:38:99:0,108,1396 0/0:25,0:25:72.23:0,72,933 0/0:20,0:20:60.19:0,60,754 0/0:37,0:37:99:0,105,1311 0/0:20,0:20:60.18:0,60,741 0/1:10,15:25:99:419,0,322 0/0:114,0:114:99:0,316,3997 0/0:31,0:31:84.27:0,84,1060 0/0:35,0:35:99:0,105,1333 0/0:33,0:33:90.29:0,90,1169 0/0:48,0:48:99:0,141,1774 0/0:50,0:50:99:0,138,1757 0/0:46,0:46:99:0,135,1709 0/0:26,0:26:72.23:0,72,926 0/0:48,0:48:99:0,135,1851 0/0:50,0:50:99:0,135,1854 0/0:50,0:50:99:0,144,1984 0/0:43,0:43:99:0,120,1655 0/0:30,0:30:87.25:0,87,1099 0/0:43,0:43:99:0,123,1573 0/0:37,0:37:99:0,102,1312 0/0:27,0:27:78.24:0,78,978 0/0:29,0:29:84.25:0,84,1077 0/0:30,0:30:87.27:0,87,1092 0/0:20,0:20:54.17:0,54,685 0/0:30,0:30:87.28:0,87,1118 0/0:34,0:34:93.30:0,93,1195 0/0:43,0:43:99:0,114,1488 0/0:37,0:37:96.29:0,96,1217 0/0:25,0:25:75.23:0,75,945 0/0:31,0:31:90.28:0,90,1143 0/0:37,0:37:99:0,111,1417 0/0:35,0:35:93.30:0,93,1211 0/0:41,0:41:99:0,117,1474 11 58940278 . G T 979.34 . AC=8;AF=0.095;AN=84;BaseQRankSum=2.318;DP=511;Dels=0.00;FS=1.378;HRun=0;HaplotypeScore=0.6777;InbreedingCoeff=0.1647;MQ=58.46;MQ0=0;MQRankSum=-0.031;QD=14.40;ReadPosRankSum=-0.403 GT:AD:DP:GQ:PL 0/1:10,3:13:81.60:82,0,213 0/0:8,0:8:21.04:0,21,228 0/0:8,0:8:18.05:0,18,210 0/0:17,0:17:45.13:0,45,546 0/0:9,0:9:24.08:0,24,306 0/0:9,0:9:27.09:0,27,356 0/0:5,0:5:15.05:0,15,189 0/1:7,6:13:99:182,0,153 0/0:12,0:12:36.10:0,36,420 0/1:4,8:12:66.46:225,0,66 0/0:9,0:9:21.06:0,21,261 0/0:13,0:13:33.06:0,33,359 0/0:11,0:11:24.07:0,24,284 0/0:10,0:10:30.09:0,30,351 0/0:42,0:42:99:0,117,1304 0/0:8,0:8:21.04:0,21,249 0/0:11,0:11:30.08:0,30,335 0/0:6,0:6:15.04:0,15,175 0/0:16,0:16:42.11:0,42,483 0/0:22,0:22:63.18:0,63,733 0/0:20,0:20:57.14:0,57,646 0/0:15,0:15:39.10:0,39,444 0/0:11,0:11:30.08:0,30,344 0/0:12,0:12:30.09:0,30,379 0/0:7,0:7:18.05:0,18,224 0/1:5,1:6:21.93:22,0,135 0/1:4,5:9:18.39:129,0,18 0/0:6,0:6:12.04:0,12,145 1/1:0,10:10:30.09:368,30,0 0/0:9,0:9:24.05:0,24,271 0/0:16,0:16:42.11:0,42,470 0/0:21,0:21:51.09:0,51,545 0/0:17,0:17:42.12:0,42,474 0/0:8,0:8:21.05:0,21,228 0/1:2,3:5:55.25:100,0,55 0/0:18,0:18:45.10:0,45,495 0/0:9,0:10:24.07:0,24,289 0/0:15,0:16:45.12:0,45,498 0/0:14,0:14:36.08:0,36,379 0/0:11,0:11:33.10:0,33,394 0/0:9,0:9:27.04:0,27,288 0/0:7,0:7:21.02:0,21,219 11 58956735 . A T 207.92 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.458;DP=523;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.4008;InbreedingCoeff=-0.0141;MQ=57.58;MQ0=0;MQRankSum=1.469;QD=18.90;ReadPosRankSum=-0.580 GT:AD:DP:GQ:PL 0/0:9,0:9:27.08:0,27,328 0/0:10,0:10:30.09:0,30,357 0/0:6,0:6:18.05:0,18,215 0/0:14,0:14:39.12:0,39,475 0/0:17,0:17:51.16:0,51,618 0/0:15,0:15:45.13:0,45,549 0/0:11,0:11:33.10:0,33,396 0/0:9,0:9:27.08:0,27,327 0/0:6,0:6:15.03:0,15,164 0/0:9,0:9:27.06:0,27,300 0/0:7,0:7:21.06:0,21,249 0/0:11,0:11:33.10:0,33,398 0/0:15,0:15:45.14:0,45,538 0/0:12,0:12:36.11:0,36,432 0/0:37,0:37:99:0,99,1194 0/0:9,0:9:21.06:0,21,238 0/0:13,0:13:39.12:0,39,465 0/0:9,0:9:27.08:0,27,311 0/0:22,0:22:60.19:0,60,743 0/0:25,0:25:72.19:0,72,853 0/0:28,0:28:81.24:0,81,964 0/0:13,0:13:39.12:0,39,461 0/0:10,0:10:27.08:0,27,315 0/0:7,0:7:21.06:0,21,255 0/0:11,0:11:30.09:0,30,360 0/0:8,0:8:24.07:0,24,288 0/0:7,0:7:21.06:0,21,239 0/0:10,0:10:30.06:0,30,331 0/0:8,0:8:24.07:0,24,285 0/0:7,0:7:18.05:0,18,212 0/0:6,0:6:18.05:0,18,213 0/0:22,0:22:63.19:0,63,762 0/0:19,0:19:54.16:0,54,646 0/0:7,0:7:21.06:0,21,246 0/0:12,0:12:36.11:0,36,422 0/0:9,0:9:27.08:0,27,324 0/0:23,0:23:57.17:0,57,689 0/0:5,0:5:15.05:0,15,179 0/0:16,0:16:48.14:0,48,566 0/0:11,0:11:33.10:0,33,386 0/0:7,0:7:21.06:0,21,247 0/1:2,9:11:43.03:254,0,43 11 58956761 . C A 314.75 . AC=17;AF=0.213;AN=80;BaseQRankSum=-7.827;DP=328;Dels=0.00;FS=79.528;HRun=2;HaplotypeScore=0.2647;InbreedingCoeff=-0.0403;MQ=56.42;MQ0=0;MQRankSum=-1.389;QD=2.97;ReadPosRankSum=-2.238 GT:AD:DP:GQ:PL 0/0:4,0:4:12.03:0,12,141 0/1:7,2:9:36.94:37,0,232 0/1:4,2:6:21.08:21,0,137 0/1:4,7:11:19.52:20,0,97 0/1:2,2:4:18.64:19,0,72 ./. 0/0:5,2:7:15.03:0,15,176 0/0:3,2:5:9.03:0,9,113 0/1:3,3:6:52.74:53,0,96 0/0:2,2:4:3.01:0,3,37 0/0:4,2:6:12.04:0,12,152 0/0:7,0:7:18.05:0,18,216 0/1:5,2:7:11.57:12,0,170 0/0:7,2:9:18.06:0,18,224 0/0:14,4:18:36.11:0,36,436 0/0:5,1:6:12.03:0,12,135 0/0:5,3:8:15.05:0,15,183 0/1:3,1:4:25.33:25,0,67 0/1:3,5:8:27.42:27,0,33 0/0:16,5:21:7.56:0,8,398 0/0:11,2:13:4.45:0,4,334 0/0:8,4:12:18.06:0,18,220 1/1:0,3:3:6.01:63,6,0 0/1:0,2:2:1.76:29,3,0 0/1:4,3:7:46.89:47,0,108 0/0:4,2:6:9.03:0,9,110 0/0:4,3:7:12.03:0,12,141 0/0:7,1:8:21.05:0,21,244 0/0:2,2:4:6.02:0,6,77 0/1:6,4:10:22.32:22,0,103 0/0:3,1:4:6.02:0,6,70 0/0:12,9:21:9.76:0,10,305 0/1:9,4:13:3.63:4,0,196 0/1:5,1:6:21.40:21,0,91 0/0:5,1:6:12.04:0,12,153 0/0:6,2:8:18.05:0,18,214 0/0:13,2:15:33.10:0,33,403 0/0:5,2:7:12.04:0,12,147 0/1:3,3:6:47.21:47,0,71 ./. 0/0:4,1:5:12.03:0,12,141 0/1:0,4:4:1.76:26,3,0 11 59540697 . A G 1296.40 . 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C T 3372.16 . 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A G 66217.93 . 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G T 30868.94 . 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T A 126929.95 . 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G A 55625.50 . 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ATT A 92114.98 . 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C T 65828.59 . 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C T 3008.58 . 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C T 41534.46 . 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A G 848.34 . 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T C 37226.67 . 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A G 37148.06 . 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G A 476.95 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.270;DP=1886;Dels=0.00;FS=4.699;HRun=0;HaplotypeScore=0.9057;InbreedingCoeff=-0.0120;MQ=59.28;MQ0=0;MQRankSum=-0.595;QD=15.39;ReadPosRankSum=0.687 GT:AD:DP:GQ:PL 0/0:30,0:30:90.22:0,90,984 0/0:31,0:31:87.23:0,87,984 0/0:34,0:34:99:0,99,1149 0/0:99,0:99:99:0,283,3528 0/0:86,0:86:99:0,250,3138 0/0:54,0:54:99:0,156,1971 0/0:48,0:48:99:0,138,1705 0/0:55,0:55:99:0,159,1964 0/0:38,0:38:99:0,99,1161 0/0:29,0:29:84.23:0,84,961 0/0:36,0:36:99:0,99,1147 0/0:32,0:32:90.26:0,90,1055 0/0:26,0:26:75.19:0,75,853 0/0:32,0:33:87.20:0,87,975 0/0:107,0:107:99:0,286,3390 0/0:30,0:30:75.22:0,75,903 0/0:33,0:33:93.26:0,93,1063 0/0:34,0:34:99:0,99,1141 0/0:68,0:70:99:0,189,2172 0/0:57,0:57:99:0,159,1870 0/0:53,0:53:99:0,147,1730 0/0:46,0:46:99:0,126,1444 0/0:86,0:86:99:0,247,3105 0/0:53,0:53:99:0,150,1911 0/0:54,0:54:99:0,150,1924 0/0:39,0:39:99:0,108,1378 0/0:31,0:31:93.25:0,93,1062 0/0:40,0:40:99:0,108,1257 0/0:30,0:30:84.24:0,84,988 0/0:33,0:33:87.25:0,87,1000 0/1:14,17:31:99:523,0,390 0/0:56,0:56:99:0,144,1714 0/0:32,0:32:87.24:0,87,1015 0/0:38,0:38:99:0,108,1231 0/0:29,0:29:78.18:0,78,883 0/0:44,0:44:99:0,117,1377 0/0:57,0:57:99:0,159,1823 0/0:35,0:35:99:0,99,1122 0/0:33,0:33:93.26:0,93,1073 0/0:39,0:39:99:0,111,1282 0/0:26,0:26:78.20:0,78,872 0/0:39,0:39:99:0,111,1291 11 60709520 . C A 4121.77 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.820;DP=6839;DS;Dels=0.00;FS=1.609;HRun=0;HaplotypeScore=4.4634;InbreedingCoeff=-0.0244;MQ=59.45;MQ0=1;MQRankSum=-0.330;QD=11.91;ReadPosRankSum=1.106 GT:AD:DP:GQ:PL 0/0:134,0:135:99:0,343,4221 0/0:112,0:113:99:0,277,3446 0/0:98,0:99:99:0,259,3223 0/0:243,0:245:99:0,584,7464 0/0:243,0:247:99:0,641,8263 0/0:234,1:238:99:0,596,7577 0/0:209,0:212:99:0,509,6626 0/0:243,1:245:99:0,589,7887 0/0:138,0:140:99:0,352,4440 0/0:133,0:134:99:0,337,4158 0/0:153,0:155:99:0,391,4909 0/0:113,0:114:99:0,310,3781 0/0:110,0:111:99:0,292,3590 0/0:141,0:141:99:0,382,4713 0/0:219,0:225:99:0,584,7074 0/0:136,0:138:99:0,364,4436 0/0:133,0:134:99:0,364,4462 0/0:110,0:110:99:0,286,3508 0/0:189,0:190:99:0,493,5926 0/0:238,1:240:99:0,602,7519 0/0:210,1:213:99:0,544,6423 0/0:140,0:140:99:0,364,4501 0/0:238,1:244:99:0,567,7657 0/0:199,0:200:99:0,487,6297 0/0:249,0:250:99:0,653,8397 0/1:118,109:228:99:2808,0,3159 0/0:91,2:93:99:0,209,2862 0/0:134,0:134:99:0,367,4445 0/1:65,53:118:99:1313,0,1790 0/0:136,0:138:99:0,361,4475 0/0:115,0:116:99:0,322,3944 0/0:246,0:247:99:0,599,7523 0/0:179,0:181:99:0,448,5641 0/0:115,0:118:99:0,301,3788 0/0:111,0:111:99:0,298,3655 0/0:142,0:142:99:0,364,4486 0/0:201,0:203:99:0,511,6161 0/0:127,0:130:99:0,331,4057 0/0:120,0:120:99:0,322,3937 0/0:130,0:133:99:0,337,4123 0/0:105,0:105:99:0,274,3341 0/0:107,1:108:99:0,295,3549 11 60781419 . C A 1400 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.882;DP=1734;Dels=0.00;FS=11.344;HRun=1;HaplotypeScore=1.4162;InbreedingCoeff=-0.0247;MQ=59.07;MQ0=0;MQRankSum=0.662;QD=13.59;ReadPosRankSum=0.166 GT:AD:DP:GQ:PL 0/0:25,0:25:72.21:0,72,862 0/0:50,0:50:99:0,126,1582 0/0:25,0:25:66.19:0,66,817 0/0:70,0:70:99:0,166,2191 0/0:67,0:67:99:0,172,2307 0/0:40,0:41:99:0,105,1408 0/0:42,0:42:99:0,114,1488 0/0:39,0:39:90.28:0,90,1230 0/0:38,0:38:99:0,105,1309 0/0:20,0:20:54.16:0,54,659 0/0:31,0:31:90.28:0,90,1127 0/0:26,0:26:75.23:0,75,925 0/0:29,0:29:75.24:0,75,964 0/0:36,0:36:93.28:0,93,1153 0/0:139,0:139:99:0,352,4414 0/0:30,0:30:78.21:0,78,917 0/0:30,0:30:84.24:0,84,1011 0/0:32,0:32:93.26:0,93,1152 0/0:49,0:49:99:0,129,1563 0/0:65,0:65:99:0,166,2091 0/0:68,0:68:99:0,184,2200 0/0:40,0:40:99:0,117,1430 0/0:69,0:69:99:0,178,2338 0/0:30,0:30:72.23:0,72,971 0/0:44,0:44:99:0,114,1535 0/0:43,0:43:99:0,108,1425 0/0:16,1:17:15.52:0,16,508 0/0:31,0:31:90.27:0,90,1083 0/0:30,0:30:84.24:0,84,1003 0/0:31,0:31:78.24:0,78,987 0/0:31,0:31:81.24:0,81,1015 0/0:61,0:61:99:0,159,1975 0/0:28,0:28:66.15:0,66,790 0/0:15,0:15:45.14:0,45,558 0/0:36,0:36:96.26:0,96,1157 0/0:34,0:34:99:0,99,1206 0/1:24,36:60:99:986,0,560 0/1:25,18:43:99:477,0,706 0/0:29,0:29:87.26:0,87,1068 0/0:44,0:44:99:0,108,1361 0/0:32,0:32:84.24:0,84,1034 0/0:34,0:34:96.30:0,96,1190 11 60785263 . A G 4842.81 . 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A G 103963.74 . 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C T 12087.42 . 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G A 20145.63 . 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C T 335.52 . 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A G 51826.57 . 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C T 24818.02 . 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A G 597.26 . 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C G 5.96 . 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A G 2275.88 . 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G A 2742.56 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.107;DP=6864;DS;Dels=0.00;FS=1.181;HRun=1;HaplotypeScore=4.4369;InbreedingCoeff=-0.0244;MQ=34.66;MQ0=599;MQRankSum=-0.207;QD=9.90;ReadPosRankSum=-0.961 GT:AD:DP:GQ:PL 0/0:136,0:136:99:0,327,3568 0/1:77,65:142:99:1398,0,1471 0/1:71,64:135:99:1407,0,1202 0/0:238,0:238:99:0,577,6947 0/0:213,1:214:99:0,472,5409 0/0:174,0:174:99:0,397,4652 0/0:156,0:159:99:0,343,4000 0/0:161,0:161:99:0,364,4389 0/0:160,2:162:99:0,355,3943 0/0:153,0:153:99:0,342,3754 0/0:139,0:139:99:0,315,3390 0/0:135,0:135:99:0,327,3504 0/0:113,0:113:99:0,243,2786 0/0:169,0:170:99:0,381,4068 0/0:246,0:246:99:0,532,5743 0/0:145,0:145:99:0,327,3590 0/0:171,0:172:99:0,372,4061 0/0:138,0:138:99:0,325,3639 0/0:220,1:222:99:0,487,5418 0/0:238,0:238:99:0,535,5999 0/0:244,0:246:99:0,502,5572 0/0:175,0:175:99:0,388,4381 0/0:242,0:242:99:0,523,6219 0/0:120,0:121:99:0,261,3090 0/0:171,0:171:99:0,400,4704 0/0:113,0:113:99:0,258,2965 0/0:114,0:114:99:0,282,3195 0/0:132,0:132:99:0,324,3440 0/0:138,0:138:99:0,345,3754 0/0:141,0:141:99:0,339,3602 0/0:143,0:143:99:0,316,3546 0/0:246,0:246:99:0,547,6301 0/0:134,0:134:99:0,321,3553 0/0:129,0:129:99:0,303,3314 0/0:129,0:129:99:0,321,3445 0/0:140,0:140:99:0,297,3315 0/0:240,0:241:99:0,502,5444 0/0:154,0:154:99:0,361,4027 0/0:154,0:155:99:0,363,3903 0/0:149,0:149:99:0,328,3715 0/0:132,0:132:99:0,279,3157 0/0:127,0:127:99:0,294,3219 11 61106892 . G C 59682.74 . AC=84;AF=1.000;AN=84;BaseQRankSum=3.427;DP=1969;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.8983;InbreedingCoeff=-0.0000;MQ=58.95;MQ0=0;MQRankSum=0.034;QD=30.31;ReadPosRankSum=0.909 GT:AD:DP:GQ:PL 1/1:0,33:33:90.16:970,90,0 1/1:0,34:34:96.25:1050,96,0 1/1:1,30:31:81.19:891,81,0 1/1:1,145:146:99:4584,397,0 1/1:0,124:124:99:3859,334,0 1/1:0,76:76:99:2293,196,0 1/1:0,71:71:99:2333,205,0 1/1:1,67:68:99:2183,195,0 1/1:0,26:26:75.18:803,75,0 1/1:1,21:22:54.13:582,54,0 1/1:0,19:19:57.13:601,57,0 1/1:0,21:21:63.08:650,63,0 1/1:0,23:23:63.14:687,63,0 1/1:0,30:30:90.22:970,90,0 1/1:0,86:86:99:2509,235,0 1/1:0,36:37:99:1136,105,0 1/1:0,28:28:84.13:864,84,0 1/1:0,21:21:57.13:619,57,0 1/1:0,49:49:99:1339,126,0 1/1:1,62:63:99:1989,180,0 1/1:0,45:45:99:1234,114,0 1/1:0,33:33:96.17:999,96,0 1/1:0,140:140:99:4467,391,0 1/1:0,63:64:99:2059,180,0 1/1:0,66:68:99:2062,180,0 1/1:0,61:61:99:1951,168,0 1/1:0,20:20:51.14:580,51,0 1/1:0,37:37:99:1074,99,0 1/1:0,28:28:78.19:842,78,0 1/1:0,32:32:81.18:877,81,0 1/1:0,30:30:81.17:862,81,0 1/1:0,57:57:99:1502,138,0 1/1:0,40:40:99:1258,117,0 1/1:0,33:33:90.19:949,90,0 1/1:0,27:27:81.19:865,81,0 1/1:0,26:26:72.17:780,72,0 1/1:0,45:45:99:1291,123,0 1/1:0,32:32:90.18:960,90,0 1/1:0,37:37:99:1135,105,0 1/1:0,31:32:93.22:1004,93,0 1/1:0,30:30:75.14:805,75,0 1/1:0,44:44:99:1213,114,0 11 61179285 . G A 77013.68 . AC=74;AF=0.881;AN=84;BaseQRankSum=7.041;DP=2694;Dels=0.00;FS=2.059;HRun=1;HaplotypeScore=1.2896;InbreedingCoeff=-0.1351;MQ=59.35;MQ0=0;MQRankSum=-0.810;QD=28.59;ReadPosRankSum=-0.106 GT:AD:DP:GQ:PL 1/1:0,78:79:99:2648,220,0 1/1:0,66:66:99:2155,178,0 1/1:0,53:53:99:1755,144,0 1/1:0,91:91:99:3172,262,0 0/1:24,43:67:99:1309,0,618 1/1:0,59:59:99:1974,153,0 1/1:0,55:55:99:1973,159,0 1/1:0,64:64:99:2191,178,0 1/1:0,46:46:99:1656,138,0 0/1:22,28:50:99:756,0,557 0/1:30,28:58:99:819,0,849 0/1:29,28:57:99:793,0,802 0/1:30,17:47:99:451,0,716 1/1:0,58:59:99:1849,153,0 1/1:0,177:179:99:5634,466,0 1/1:0,62:63:99:2049,169,0 1/1:0,52:52:99:1679,135,0 1/1:0,56:56:99:1944,162,0 0/1:50,42:92:99:1168,0,1168 0/1:54,46:100:99:1110,0,1415 1/1:0,90:90:99:3088,253,0 1/1:0,43:43:99:1445,123,0 0/1:49,46:95:99:1362,0,1428 1/1:0,52:52:99:1838,150,0 1/1:0,59:59:99:1899,153,0 1/1:0,44:44:99:1522,126,0 1/1:0,38:38:99:1332,111,0 1/1:0,55:55:99:1877,159,0 1/1:0,38:38:99:1266,105,0 1/1:0,55:55:99:1834,150,0 1/1:0,44:44:99:1472,120,0 1/1:0,107:108:99:3414,274,0 1/1:0,69:69:99:2308,190,0 0/1:18,41:59:99:1270,0,394 0/1:27,25:52:99:612,0,650 1/1:0,67:67:99:2195,178,0 1/1:0,79:79:99:2522,205,0 1/1:0,62:62:99:2030,168,0 1/1:0,48:48:99:1651,138,0 1/1:0,43:43:99:1538,129,0 1/1:0,46:46:99:1579,132,0 1/1:0,54:55:99:1874,156,0 11 61539020 . C G 38630.19 . AC=25;AF=0.298;AN=84;BaseQRankSum=-34.593;DP=5731;DS;Dels=0.00;FS=33.284;HRun=0;HaplotypeScore=4.8834;InbreedingCoeff=-0.3098;MQ=58.90;MQ0=0;MQRankSum=1.120;QD=12.93;ReadPosRankSum=-0.977 GT:AD:DP:GQ:PL 0/1:56,48:104:99:1171,0,1577 0/1:45,53:98:99:1157,0,1314 0/1:46,43:89:99:1077,0,1380 0/1:128,119:248:99:3017,0,3891 0/0:227,0:229:99:0,650,8648 0/0:166,1:167:99:0,429,5970 0/0:148,0:149:99:0,403,5204 0/1:96,96:192:99:2621,0,2923 0/1:44,53:97:99:1241,0,1242 0/1:50,40:91:99:929,0,1318 1/1:0,90:90:99:2753,244,0 0/0:85,0:85:99:0,220,2681 0/1:42,41:83:99:954,0,1232 0/0:113,0:113:99:0,298,3706 0/1:124,124:250:99:2908,0,3411 0/1:52,56:108:99:1341,0,1308 0/1:43,38:81:99:921,0,1306 0/1:43,48:91:99:1154,0,1176 0/0:242,0:243:99:0,632,7833 0/0:211,0:211:99:0,548,7017 0/1:106,117:225:99:2738,0,2732 0/1:66,47:113:99:1197,0,1881 0/1:114,136:250:99:3851,0,3500 0/0:177,0:177:99:0,478,6270 0/0:183,0:183:99:0,506,6683 0/1:69,83:153:99:2103,0,2077 0/1:46,31:77:99:713,0,1333 0/1:50,57:107:99:1416,0,1284 0/1:47,35:82:99:907,0,1324 0/1:47,45:93:99:1158,0,1341 0/1:44,45:89:99:1151,0,1191 0/0:238,0:238:99:0,593,7672 0/0:163,0:163:99:0,415,5313 0/1:44,38:82:99:904,0,1231 0/0:89,1:90:99:0,226,3003 0/1:48,47:95:99:1247,0,1321 0/0:215,0:217:99:0,545,6681 0/0:94,0:94:99:0,250,3070 0/0:98,0:99:99:0,262,3299 0/0:105,0:105:99:0,280,3486 0/0:73,1:74:99:0,165,2357 0/0:105,0:106:99:0,274,3466 11 61545252 . T G 68.96 . AC=8;AF=0.118;AN=68;BaseQRankSum=-5.207;DP=136;Dels=0.00;FS=53.528;HRun=2;HaplotypeScore=0.2062;InbreedingCoeff=0.0109;MQ=58.48;MQ0=0;MQRankSum=-0.196;QD=2.87;ReadPosRankSum=-4.198 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.02:0,9,99 0/0:1,1:2:3.01:0,3,35 0/0:3,2:5:6.01:0,6,58 ./. 0/1:1,1:2:24.57:25,0,31 0/0:1,0:1:3.01:0,3,39 ./. 0/0:1,2:3:3.01:0,3,38 ./. ./. ./. 0/0:3,0:3:9:0,9,95 0/0:2,1:3:6.02:0,6,76 0/0:7,3:10:21.06:0,21,250 0/1:8,2:10:10.82:11,0,209 0/0:6,2:8:18.03:0,18,196 ./. 0/0:4,2:6:9.50:0,9,111 0/0:4,1:5:12.04:0,12,145 0/0:4,0:4:12.04:0,12,144 0/0:1,1:2:3.01:0,3,38 0/1:0,1:1:1.76:31,3,0 ./. 0/0:3,2:5:9.02:0,9,100 1/1:0,2:2:3.01:32,3,0 0/0:2,1:3:3.01:0,3,37 0/0:2,2:4:5.05:0,5,41 0/0:1,1:2:3.01:0,3,38 0/1:2,2:4:16.68:27,0,17 0/0:1,1:2:3.01:0,3,37 0/0:2,3:5:6.02:0,6,72 0/0:2,2:4:6:0,6,54 ./. 0/1:2,1:3:19.68:20,0,26 0/0:2,0:2:6.02:0,6,70 0/0:6,1:7:18.04:0,18,203 0/0:3,1:4:9.03:0,9,107 0/0:3,5:8:9.03:0,9,107 0/0:3,0:3:9.03:0,9,106 0/1:1,1:2:26.48:26,0,32 0/0:2,0:2:5.99:0,6,59 11 61547382 . G C 384.32 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.714;DP=1154;Dels=0.00;FS=1.025;HRun=0;HaplotypeScore=0.6076;InbreedingCoeff=-0.0121;MQ=59.28;MQ0=0;MQRankSum=-0.035;QD=13.25;ReadPosRankSum=-1.795 GT:AD:DP:GQ:PL 0/0:21,0:21:60.19:0,60,761 0/0:22,0:22:60.19:0,60,753 0/0:19,0:19:48.15:0,48,624 0/0:49,0:49:99:0,132,1783 0/0:42,0:42:99:0,117,1587 0/0:29,0:29:75.24:0,75,1027 0/0:33,0:33:84.27:0,84,1154 0/0:31,0:31:78.24:0,78,1045 0/0:24,0:24:63.20:0,63,821 0/0:15,0:15:42.14:0,42,543 0/0:26,0:26:66.20:0,66,846 0/0:13,0:13:39.12:0,39,485 0/0:14,0:14:36.12:0,36,472 0/0:26,0:26:69.22:0,69,897 0/0:78,0:78:99:0,199,2541 0/1:14,15:29:99:431,0,356 0/0:28,0:28:75.24:0,75,969 0/0:23,0:23:57.18:0,57,744 0/0:30,0:30:75.24:0,75,984 0/0:42,0:42:99:0,108,1400 0/0:34,0:34:75.22:0,75,973 0/0:21,0:21:45.15:0,45,609 0/0:54,1:55:99:0,135,1857 0/0:20,0:20:54.17:0,54,713 0/0:25,0:25:72.22:0,72,947 0/0:28,0:28:69.23:0,69,969 0/0:29,0:29:78.25:0,78,1015 0/0:22,0:22:60.18:0,60,746 0/0:19,0:19:54.15:0,54,671 0/0:17,0:17:48.15:0,48,621 0/0:25,0:25:63.19:0,63,813 0/0:27,0:27:75.24:0,75,972 0/0:26,0:26:72.23:0,72,919 0/0:19,0:19:48.15:0,48,614 0/0:23,0:23:63.20:0,63,815 0/0:20,0:20:51.16:0,51,667 0/0:40,0:40:99:0,102,1304 0/0:23,0:23:63.20:0,63,801 0/0:22,0:22:60.19:0,60,766 0/0:28,0:28:78.25:0,78,999 0/0:18,0:18:54.17:0,54,691 0/0:19,0:19:51.16:0,51,662 11 61658800 . C T 2277.70 . AC=59;AF=0.819;AN=72;BaseQRankSum=0.975;DP=89;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1753;InbreedingCoeff=0.1832;MQ=55.23;MQ0=0;MQRankSum=-0.576;QD=27.44;ReadPosRankSum=0.029 GT:AD:DP:GQ:PL 1/1:0,3:3:9.03:107,9,0 1/1:0,2:2:6.02:71,6,0 1/1:0,1:1:3.01:32,3,0 1/1:0,5:5:9.03:123,9,0 1/1:0,5:5:15.05:182,15,0 ./. 1/1:0,1:1:3.01:30,3,0 0/1:1,0:1:1.76:0,3,34 1/1:0,2:2:6.02:70,6,0 0/0:1,0:1:3.01:0,3,38 1/1:0,2:2:6.01:61,6,0 0/0:1,0:1:3.01:0,3,35 ./. 1/1:0,3:3:9.01:94,9,0 1/1:0,4:4:12.03:132,12,0 1/1:0,2:2:6.02:70,6,0 1/1:0,3:3:6.02:78,6,0 1/1:0,1:1:3.01:38,3,0 1/1:0,2:2:6.02:71,6,0 ./. 0/0:2,0:2:5.98:0,6,49 0/0:2,0:2:3.01:0,3,45 0/1:2,2:4:35.74:60,0,36 ./. 0/1:1,2:3:17.66:68,0,18 1/1:0,1:1:3.01:32,3,0 1/1:0,1:1:3.01:34,3,0 1/1:0,1:1:3.01:30,3,0 1/1:0,1:1:3.01:36,3,0 1/1:0,2:2:6.02:70,6,0 1/1:0,3:3:9.03:108,9,0 0/1:2,5:7:29.72:126,0,30 1/1:0,2:2:6.02:70,6,0 1/1:0,4:4:12.04:148,12,0 0/1:2,2:4:47.22:57,0,47 1/1:0,3:3:6.02:83,6,0 1/1:0,2:2:6.02:70,6,0 1/1:0,4:4:9.03:118,9,0 ./. 1/1:0,1:1:3.01:37,3,0 1/1:0,3:3:9.02:101,9,0 ./. 11 61674100 . T G 483.90 . AC=22;AF=0.262;AN=84;BaseQRankSum=-11.429;DP=632;Dels=0.00;FS=457.086;HRun=2;HaplotypeScore=0.5152;InbreedingCoeff=-0.3661;MQ=58.03;MQ0=0;MQRankSum=0.886;QD=1.44;ReadPosRankSum=-11.560 GT:AD:DP:GQ:PL 0/1:11,5:16:22.83:23,0,346 0/1:6,8:14:36.05:36,0,119 0/1:5,7:12:12.54:13,0,157 0/1:19,19:38:17.55:18,0,532 0/0:22,12:34:19.31:0,19,709 0/1:9,10:19:5.37:5,0,278 0/0:9,6:15:27.08:0,27,326 0/1:5,5:10:44.93:45,0,168 0/0:10,7:17:4.44:0,4,325 0/0:7,5:12:2.27:2,0,226 0/1:2,3:5:16.66:17,0,67 0/0:8,4:12:24.07:0,24,277 0/1:4,2:6:10.65:11,0,123 0/1:7,5:12:14.51:15,0,209 0/1:25,14:39:23.62:24,0,751 0/1:8,3:11:3.64:4,0,186 0/1:8,5:13:31.06:31,0,256 0/0:7,4:11:20.80:0,21,221 0/0:9,4:13:0.47:0,0,298 0/0:15,10:25:44.70:0,45,491 0/0:15,5:20:25:0,25,493 0/0:8,6:14:24.04:0,24,265 0/1:18,14:32:54.07:54,0,555 0/1:8,8:16:88.84:89,0,190 0/1:10,10:20:20.41:20,0,300 0/1:9,6:15:2.64:3,0,210 0/0:8,2:10:15.52:0,16,192 0/1:7,4:11:40.08:40,0,156 0/1:5,4:9:33.29:33,0,136 0/1:4,3:7:10.65:11,0,128 0/0:8,2:10:16.24:0,16,226 0/0:9,5:14:24.07:0,24,303 0/0:9,5:14:27.08:0,27,326 0/1:6,4:10:45.27:45,0,102 0/0:3,7:10:9.03:0,9,108 0/0:8,2:10:24.07:0,24,292 0/1:10,5:15:60.26:60,0,313 0/0:13,8:21:39.09:0,39,434 0/0:11,7:18:32.45:0,32,352 0/0:5,2:7:9.50:0,10,114 0/1:3,4:7:50.31:50,0,68 0/0:4,4:8:12.03:0,12,136 11 61674118 . C T 5636.38 . AC=35;AF=0.417;AN=84;BaseQRankSum=5.592;DP=509;Dels=0.00;FS=27.634;HRun=0;HaplotypeScore=0.4666;InbreedingCoeff=0.0677;MQ=58.10;MQ0=0;MQRankSum=-0.090;QD=19.11;ReadPosRankSum=-2.058 GT:AD:DP:GQ:PL 1/1:0,12:13:36.11:433,36,0 1/1:0,7:7:18.05:213,18,0 0/1:5,6:11:99:149,0,136 0/0:29,0:29:87.23:0,87,988 0/0:29,0:29:84.26:0,84,1009 0/0:13,0:13:36.08:0,36,417 0/1:4,6:10:99:161,0,119 0/1:5,2:7:49.23:49,0,157 0/1:12,6:18:99:128,0,344 0/1:5,2:7:52.05:52,0,140 0/1:2,3:5:57.88:94,0,58 0/0:10,0:10:27.08:0,27,320 0/1:5,3:8:83.21:83,0,146 0/0:9,0:9:27.07:0,27,311 1/1:0,41:42:99:1329,111,0 1/1:0,9:9:27.07:314,27,0 1/1:0,9:9:27.08:318,27,0 0/1:3,2:5:58.06:58,0,89 0/1:6,3:9:83.44:83,0,149 0/1:12,9:21:99:252,0,300 0/0:15,0:15:42.11:0,42,470 0/0:8,0:8:24.04:0,24,251 0/0:25,0:26:69.20:0,69,821 0/1:8,4:12:78.89:79,0,261 0/0:13,0:13:36.10:0,36,420 1/1:0,11:11:30.09:364,30,0 0/1:4,5:9:99:155,0,107 0/0:8,0:8:21.04:0,21,217 1/1:0,7:7:18.06:217,18,0 0/1:6,1:7:10.49:10,0,183 0/1:3,6:9:72.27:186,0,72 0/1:9,6:15:99:165,0,244 0/1:8,4:12:96.44:96,0,212 1/1:0,7:7:21.06:253,21,0 0/1:2,4:6:45.04:132,0,45 0/1:6,7:13:99:207,0,154 0/0:11,0:11:30.08:0,30,332 0/0:17,0:17:48.13:0,48,540 0/0:14,0:14:42.11:0,42,460 0/0:7,0:7:18.04:0,18,192 0/0:5,0:5:15.04:0,15,164 0/1:4,2:6:51.81:52,0,100 11 61675644 . T C 1607.25 . AC=13;AF=0.155;AN=84;BaseQRankSum=-6.265;DP=305;Dels=0.00;FS=14.182;HRun=0;HaplotypeScore=0.2365;InbreedingCoeff=0.1083;MQ=59.10;MQ0=0;MQRankSum=0.064;QD=16.57;ReadPosRankSum=-0.927 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,290 0/0:7,0:7:21.07:0,21,256 0/0:3,0:3:9.03:0,9,109 0/0:20,0:20:48.15:0,48,600 0/0:11,0:11:33.08:0,33,380 0/1:2,5:7:56.31:121,0,56 0/1:4,6:10:99:180,0,116 0/0:6,0:6:18.06:0,18,220 0/1:5,3:8:79.78:80,0,144 0/1:2,2:4:54.69:55,0,61 0/0:4,0:4:12.04:0,12,151 0/0:3,0:3:9.03:0,9,110 0/0:2,0:2:6.02:0,6,70 0/0:5,0:5:15.04:0,15,179 0/0:19,0:20:48.14:0,48,580 0/0:5,0:5:15.05:0,15,181 0/0:6,0:6:18.05:0,18,211 0/0:1,0:1:3.01:0,3,34 0/0:10,0:10:27.08:0,27,324 0/0:11,0:11:33.10:0,33,391 1/1:0,11:11:30.08:334,30,0 1/1:0,11:11:27.04:297,27,0 0/0:15,0:15:45.12:0,45,522 0/0:7,0:7:18.06:0,18,229 0/0:6,0:6:18.06:0,18,219 0/0:8,0:8:24.07:0,24,295 0/0:2,0:2:6.02:0,6,73 0/0:6,0:6:18.06:0,18,221 0/0:4,0:4:12.04:0,12,142 0/1:2,4:6:55.93:102,0,56 0/0:3,0:3:9.02:0,9,104 0/1:6,6:12:99:149,0,185 0/1:2,4:6:55.47:82,0,55 0/0:7,0:7:18.06:0,18,229 0/0:3,0:3:9.03:0,9,106 0/0:4,0:4:12.03:0,12,138 0/1:6,10:16:99:278,0,139 0/0:11,0:11:27.09:0,27,343 0/1:2,4:6:58.91:88,0,59 0/0:2,0:2:6.02:0,6,73 0/0:2,0:2:6.02:0,6,71 0/0:6,0:6:15.04:0,15,178 11 61675714 . T C 407.29 . AC=5;AF=0.061;AN=82;BaseQRankSum=-0.619;DP=244;Dels=0.00;FS=3.415;HRun=0;HaplotypeScore=0.3009;InbreedingCoeff=-0.0951;MQ=58.68;MQ0=0;MQRankSum=-0.525;QD=11.31;ReadPosRankSum=0.222 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,170 0/0:4,0:4:9.03:0,9,120 0/0:3,0:3:9.03:0,9,110 0/0:17,0:18:48.09:0,48,535 0/0:8,0:8:21.06:0,21,240 0/0:3,0:3:9.03:0,9,105 0/0:10,0:10:30.09:0,30,354 0/0:5,0:5:15.05:0,15,182 0/0:3,0:3:9.03:0,9,105 0/0:1,0:1:3.01:0,3,34 0/0:5,0:5:12.03:0,12,142 0/0:4,0:4:12.02:0,12,134 0/0:4,0:4:12.03:0,12,135 0/0:6,0:6:15.04:0,15,180 0/0:11,0:12:33.08:0,33,375 0/0:5,0:5:15.04:0,15,174 0/0:4,0:4:12.04:0,12,146 0/1:1,3:4:29.23:39,0,29 0/1:4,8:12:76.49:203,0,76 0/0:9,0:9:27.08:0,27,318 0/0:7,0:7:21.06:0,21,242 0/0:7,0:7:15.05:0,15,194 0/1:4,4:8:99:120,0,118 0/0:8,0:8:21.06:0,21,255 0/1:5,4:9:99:124,0,114 0/0:5,0:5:15.02:0,15,158 ./. 0/0:4,0:4:12.03:0,12,137 0/0:2,0:2:6.02:0,6,71 0/0:9,0:9:21.06:0,21,259 0/0:4,0:4:12.04:0,12,145 0/0:9,0:9:24.06:0,24,280 0/0:5,0:5:15.04:0,15,178 0/0:3,0:3:6.02:0,6,71 0/0:4,0:4:9.03:0,9,114 0/1:1,2:3:15.67:16,0,28 0/0:6,0:6:18.05:0,18,216 0/0:4,0:4:12.01:0,12,125 0/0:9,0:9:21.06:0,21,258 0/0:3,0:3:9.03:0,9,105 0/0:3,0:3:9.03:0,9,109 0/0:7,0:7:21.04:0,21,227 11 61675751 . C T 584.65 . AC=6;AF=0.073;AN=82;BaseQRankSum=-1.034;DP=274;Dels=0.00;FS=2.838;HRun=0;HaplotypeScore=0.2484;InbreedingCoeff=-0.1157;MQ=58.27;MQ0=0;MQRankSum=0.661;QD=9.14;ReadPosRankSum=1.268 GT:AD:DP:GQ:PL 0/0:4,0:4:12.03:0,12,131 0/0:4,0:4:12.01:0,12,129 0/0:4,0:4:12.03:0,12,144 0/0:25,0:26:60.19:0,60,765 0/0:11,0:11:33.10:0,33,400 0/0:5,0:5:15.04:0,15,184 0/0:10,0:10:21.07:0,21,274 0/0:10,0:10:21.07:0,21,281 0/0:5,0:5:12.04:0,12,157 0/0:3,0:3:9.02:0,9,100 0/0:4,0:4:9.02:0,9,97 0/0:3,0:3:6.02:0,6,78 0/0:5,0:5:15.02:0,15,147 0/0:5,0:5:9.02:0,9,97 0/0:12,0:12:30.09:0,30,361 0/0:6,0:6:15.04:0,15,180 0/0:4,0:4:12.03:0,12,137 0/1:3,1:4:27.95:28,0,69 0/1:3,9:14:29.11:251,0,29 0/0:7,0:7:21.03:0,21,228 0/1:9,1:10:7.30:7,0,241 0/0:3,0:3:9.01:0,9,87 0/1:7,10:17:99:255,0,172 0/0:11,0:11:27.09:0,27,353 0/1:7,5:13:99:119,0,160 0/0:6,0:6:15.04:0,15,188 0/0:2,0:2:6.02:0,6,66 0/0:3,0:3:6.01:0,6,63 ./. 0/0:8,0:8:24.06:0,24,268 0/0:2,0:2:6.01:0,6,64 0/0:11,0:11:27.07:0,27,308 0/0:3,0:3:9.02:0,9,97 0/0:5,0:5:9.03:0,9,127 0/0:4,0:4:9.03:0,9,119 0/1:3,2:6:23.22:23,0,87 0/0:3,0:3:9.03:0,9,113 0/0:4,0:4:12:0,12,116 0/0:6,0:6:18.05:0,18,202 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.02:0,9,100 0/0:6,0:7:15.04:0,15,171 11 61722627 . G C 1673.40 . AC=3;AF=0.036;AN=84;BaseQRankSum=-0.396;DP=2667;Dels=0.00;FS=0.481;HRun=0;HaplotypeScore=2.0728;InbreedingCoeff=-0.0370;MQ=59.03;MQ0=0;MQRankSum=-0.002;QD=12.13;ReadPosRankSum=0.223 GT:AD:DP:GQ:PL 0/0:60,0:61:99:0,153,1974 0/0:58,0:58:99:0,156,1947 0/0:51,0:51:99:0,135,1723 0/0:124,0:124:99:0,307,4150 0/0:86,0:86:99:0,217,2964 0/0:86,0:86:99:0,223,3012 0/0:74,0:74:99:0,199,2625 0/0:77,0:77:99:0,190,2614 0/1:32,20:52:99:593,0,895 0/0:53,0:53:99:0,135,1725 0/1:27,19:46:99:503,0,750 0/0:64,0:64:99:0,169,2180 0/0:52,0:52:99:0,138,1707 0/0:46,0:46:99:0,117,1497 0/0:173,0:173:99:0,442,5547 0/0:49,0:49:99:0,129,1635 0/0:61,0:61:99:0,160,2038 0/0:41,0:41:99:0,114,1418 0/0:53,0:53:99:0,144,1768 0/0:70,0:70:99:0,178,2233 0/0:75,0:75:99:0,190,2394 0/0:44,0:44:99:0,108,1355 0/0:96,0:96:99:0,247,3363 0/0:72,0:72:99:0,190,2513 0/0:86,0:86:99:0,208,2879 0/0:91,0:91:99:0,220,2998 0/0:37,0:37:99:0,102,1274 0/0:62,0:62:99:0,159,2004 0/0:47,0:47:99:0,117,1496 0/0:56,0:56:99:0,135,1729 0/0:43,0:43:99:0,114,1415 0/0:64,0:64:99:0,150,1910 0/0:59,0:59:99:0,150,1850 0/0:45,0:45:99:0,114,1474 0/0:63,0:63:99:0,153,1937 0/0:62,0:62:99:0,163,2041 0/0:63,0:65:99:0,169,2098 0/0:58,0:58:99:0,163,2026 0/0:44,0:44:99:0,120,1523 0/0:40,0:40:99:0,108,1347 0/0:41,0:41:99:0,105,1321 0/1:19,21:40:99:653,0,581 11 61722645 . C A 3182.13 . 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T C 9534.37 . AC=18;AF=0.214;AN=84;BaseQRankSum=-14.062;DP=2252;Dels=0.00;FS=3.309;HRun=0;HaplotypeScore=1.5879;InbreedingCoeff=0.0101;MQ=59.20;MQ0=0;MQRankSum=0.670;QD=14.65;ReadPosRankSum=-2.358 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,141,1713 0/0:35,0:35:90.27:0,90,1110 0/0:36,1:37:72.66:0,73,1167 0/0:109,0:109:99:0,283,3527 0/0:93,0:93:99:0,253,3131 0/1:23,24:47:99:643,0,603 1/1:0,48:48:99:1568,129,0 0/0:63,0:63:99:0,178,2198 0/0:42,0:42:99:0,114,1362 0/0:38,0:38:99:0,105,1238 0/1:26,17:43:99:401,0,700 1/1:0,32:33:84.21:929,84,0 0/1:15,11:26:99:271,0,467 0/1:14,19:33:99:513,0,370 0/0:146,0:146:99:0,379,4628 0/1:30,26:56:99:642,0,837 0/0:47,1:48:99:0,100,1530 0/0:42,0:42:99:0,114,1366 0/0:72,0:72:99:0,186,2236 0/0:77,0:77:99:0,196,2443 0/0:57,0:57:99:0,159,1922 0/0:44,0:44:99:0,117,1424 0/0:109,1:110:99:0,269,3623 0/0:59,0:59:99:0,160,2027 0/0:57,0:58:99:0,168,2056 0/0:48,0:48:99:0,120,1508 0/0:42,0:42:99:0,120,1441 0/1:17,18:35:99:460,0,491 0/0:38,0:38:99:0,108,1290 0/0:38,2:40:66.91:0,67,1255 0/1:19,23:42:99:513,0,556 0/0:71,0:71:99:0,184,2260 0/0:49,0:49:99:0,123,1514 0/1:35,26:61:99:649,0,963 0/1:21,10:31:99:229,0,518 0/0:41,0:41:99:0,111,1361 0/0:90,0:90:99:0,235,2886 0/1:19,13:32:99:334,0,542 0/1:19,26:45:99:670,0,527 0/1:18,27:45:99:685,0,454 0/1:13,25:38:99:580,0,333 0/1:19,17:36:99:447,0,521 11 61957809 . G A 841.54 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.095;DP=2573;Dels=0.00;FS=12.027;HRun=0;HaplotypeScore=2.9633;InbreedingCoeff=-0.0120;MQ=59.19;MQ0=0;MQRankSum=0.802;QD=11.69;ReadPosRankSum=0.249 GT:AD:DP:GQ:PL 0/1:39,32:72:99:888,0,995 0/0:55,0:55:99:0,150,1800 0/0:65,0:65:99:0,174,2098 0/0:102,1:103:99:0,227,3334 0/0:65,0:66:99:0,178,2277 0/0:75,0:75:99:0,190,2482 0/0:62,0:62:99:0,165,2108 0/0:70,0:72:99:0,187,2370 0/0:62,0:62:99:0,171,2030 0/0:48,0:48:99:0,120,1411 0/0:61,0:63:99:0,168,2014 0/0:61,0:61:99:0,165,1946 0/0:39,0:39:99:0,105,1225 0/0:51,0:51:99:0,132,1615 0/0:154,0:154:99:0,391,4593 0/0:52,1:53:99:0,104,1572 0/0:53,0:53:99:0,132,1603 0/0:49,0:49:99:0,129,1569 0/0:79,0:79:99:0,214,2459 0/0:76,0:78:99:0,208,2405 0/0:68,0:70:99:0,171,2004 0/0:39,0:39:99:0,105,1248 0/0:92,0:92:99:0,223,2865 0/0:36,0:36:96.31:0,96,1284 0/0:77,0:78:99:0,187,2416 0/0:56,0:56:99:0,159,2027 0/0:46,0:46:99:0,132,1529 0/0:53,0:53:99:0,147,1737 0/0:52,0:53:99:0,147,1792 0/0:47,0:47:99:0,126,1520 0/0:55,0:55:99:0,144,1729 0/0:70,0:71:99:0,183,2119 0/0:62,0:62:99:0,159,1889 0/0:49,0:49:99:0,138,1594 0/0:47,0:47:99:0,126,1504 0/0:53,0:53:99:0,150,1767 0/0:61,0:61:99:0,162,1906 0/0:55,0:55:99:0,150,1768 0/0:35,0:35:93.27:0,93,1125 0/0:43,0:43:99:0,120,1339 0/0:50,0:50:99:0,135,1605 0/0:61,0:61:99:0,168,1949 11 62334908 . G C 10292.14 . AC=25;AF=0.298;AN=84;BaseQRankSum=11.049;DP=1369;Dels=0.00;FS=0.226;HRun=3;HaplotypeScore=0.3791;InbreedingCoeff=0.0318;MQ=55.87;MQ0=15;MQRankSum=-10.476;QD=14.87;ReadPosRankSum=1.063 GT:AD:DP:GQ:PL 0/0:22,0:22:54.15:0,54,657 0/0:40,0:40:99:0,105,1245 0/0:17,0:17:48.14:0,48,568 0/0:24,0:24:66.20:0,66,825 0/0:33,0:33:87.28:0,87,1143 0/1:25,13:38:99:264,0,790 0/1:9,7:16:99:180,0,301 0/0:36,0:36:96.31:0,96,1250 0/1:14,19:33:99:542,0,406 1/1:0,30:30:84.26:1038,84,0 0/0:21,1:22:25.39:0,25,701 0/1:15,12:27:99:307,0,398 1/1:0,17:17:51.15:612,51,0 0/0:35,0:35:99:0,102,1176 0/1:42,47:89:99:1182,0,1106 0/1:13,20:33:99:518,0,338 0/0:39,0:39:99:0,114,1341 0/1:19,16:35:99:411,0,529 0/0:57,0:58:99:0,147,1774 0/1:34,18:52:99:365,0,936 0/1:25,29:54:99:753,0,645 0/1:17,8:25:99:155,0,442 0/0:44,0:44:99:0,120,1537 0/0:16,0:16:45.13:0,45,560 0/1:13,13:26:99:405,0,380 0/0:21,0:21:54.17:0,54,705 1/1:0,18:18:48.15:598,48,0 1/1:0,25:25:66.20:815,66,0 0/1:13,7:20:99:202,0,375 0/1:17,14:31:99:292,0,465 0/0:22,0:22:60.18:0,60,734 0/0:58,0:58:99:0,156,1854 0/1:25,22:47:99:620,0,706 0/0:27,0:27:75.21:0,75,877 0/1:15,10:25:99:278,0,434 0/0:25,0:25:72.21:0,72,861 0/0:50,0:51:99:0,138,1664 0/0:32,0:32:78.24:0,78,990 0/0:27,0:27:78.20:0,78,895 0/1:10,12:22:99:343,0,254 0/0:28,0:28:75.22:0,75,909 0/1:14,15:29:99:412,0,329 11 62364262 . G T 3527.81 . AC=36;AF=0.429;AN=84;BaseQRankSum=10.663;DP=2721;Dels=0.00;FS=2238.063;HRun=1;HaplotypeScore=1.8745;InbreedingCoeff=-0.7234;MQ=58.15;MQ0=0;MQRankSum=1.945;QD=1.49;ReadPosRankSum=-22.721 GT:AD:DP:GQ:PL 0/1:36,21:57:2.30:0,2,896 0/0:39,24:63:23.48:0,23,1000 0/1:31,18:49:68.28:68,0,869 0/1:92,58:151:99:136,0,2364 0/1:70,57:127:99:173,0,1722 0/0:53,24:77:26.79:0,27,1343 0/1:38,23:61:79.42:79,0,888 0/1:54,24:78:7.79:8,0,1342 0/0:34,11:45:2.67:0,3,959 0/1:35,15:50:63.91:64,0,924 0/1:22,11:33:99:106,0,548 0/1:27,15:43:5:5,0,644 0/1:35,18:53:99:118,0,769 0/1:30,17:47:92.48:92,0,784 0/1:134,53:187:99:173,0,3242 0/1:33,23:56:99:246,0,827 0/1:42,14:56:15.14:15,0,865 0/1:42,21:63:99:178,0,993 0/1:42,17:59:99:193,0,1033 0/1:54,30:84:21.38:21,0,1327 0/1:52,25:77:99:134,0,1300 0/0:40,18:58:8.71:0,9,998 0/1:61,39:100:99:389,0,1715 0/1:33,18:51:35.48:35,0,937 0/1:45,35:80:99:104,0,1290 0/1:43,35:78:24.76:25,0,1169 0/1:37,14:52:6.19:6,0,925 0/1:38,17:55:22.15:22,0,1004 0/1:35,10:45:35.08:35,0,843 0/1:27,14:41:54.89:55,0,692 0/1:32,19:51:99:110,0,823 0/0:46,16:62:33.08:0,33,1056 0/1:27,22:49:99:122,0,626 0/1:41,16:57:99:143,0,1054 0/1:42,21:63:22.99:23,0,1053 0/1:39,15:54:99:135,0,986 0/1:50,14:64:76.99:77,0,1236 0/0:40,12:52:99:0,102,1117 0/1:30,18:48:99:164,0,715 0/1:39,17:56:99:116,0,1068 0/1:30,11:41:29.52:30,0,719 0/1:32,16:48:99:126,0,853 11 62378559 . G A 201.21 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.077;DP=539;Dels=0.00;FS=1.234;HRun=0;HaplotypeScore=0.4049;InbreedingCoeff=-0.0248;MQ=58.24;MQ0=0;MQRankSum=-1.016;QD=10.59;ReadPosRankSum=0.162 GT:AD:DP:GQ:PL 0/0:8,1:9:0.51:9,0,257 0/0:8,0:8:21.06:0,21,239 0/0:7,0:7:18.04:0,18,193 0/0:17,0:17:51.16:0,51,624 0/0:20,0:20:54.17:0,54,703 0/0:8,0:8:24.08:0,24,310 0/0:10,0:10:27.07:0,27,328 0/0:11,0:11:33.10:0,33,394 0/0:9,0:9:27.08:0,27,309 0/0:11,0:11:24.07:0,24,306 0/0:17,0:17:45.12:0,45,529 0/0:11,0:11:30.09:0,30,363 0/0:9,0:9:21.05:0,21,240 0/0:18,0:18:45.12:0,45,524 0/0:39,0:39:99:0,114,1309 0/0:17,0:17:42.12:0,42,515 0/0:11,0:11:33.08:0,33,357 0/0:12,0:12:33.09:0,33,375 0/0:23,0:23:66.16:0,66,729 0/0:17,0:17:45.13:0,45,548 0/0:29,0:29:75.22:0,75,891 0/0:13,0:13:36.10:0,36,424 0/0:15,0:15:45.13:0,45,550 0/0:7,0:7:18.05:0,18,215 0/0:13,0:13:36.11:0,36,437 0/0:10,0:10:27.09:0,27,347 0/0:7,0:7:18.06:0,18,230 0/0:10,0:10:27.05:0,27,284 0/0:11,0:11:30.09:0,30,347 0/0:9,0:9:27.08:0,27,312 0/0:11,0:11:30.09:0,30,370 0/1:9,10:19:99:247,0,218 0/0:17,0:17:42.09:0,42,486 0/0:6,0:6:18.05:0,18,200 0/0:9,0:9:27.08:0,27,316 0/0:9,0:9:24.07:0,24,295 0/0:12,0:12:30.09:0,30,354 0/0:8,0:8:24.07:0,24,272 0/0:9,0:9:27.06:0,27,286 0/0:16,0:16:45.13:0,45,533 0/0:5,0:5:15.04:0,15,167 0/0:10,0:10:30.08:0,30,340 11 62378660 . G A 5069.97 . AC=26;AF=0.310;AN=84;BaseQRankSum=6.548;DP=672;Dels=0.00;FS=0.736;HRun=0;HaplotypeScore=0.4570;InbreedingCoeff=-0.0421;MQ=58.82;MQ0=0;MQRankSum=-0.099;QD=15.94;ReadPosRankSum=0.323 GT:AD:DP:GQ:PL 0/0:15,0:15:39.11:0,39,454 0/0:14,0:14:42.09:0,42,461 0/0:9,0:10:27.07:0,27,294 0/0:35,0:35:93.26:0,93,1117 0/1:20,11:31:99:300,0,578 0/1:9,10:19:99:279,0,251 0/1:3,10:13:29.80:326,0,30 0/0:26,0:26:75.20:0,75,898 0/1:5,7:12:99:196,0,150 1/1:0,4:4:12.04:147,12,0 0/0:12,0:12:36.08:0,36,390 0/1:5,3:8:89:89,0,113 1/1:1,12:13:30.09:381,30,0 0/0:14,0:14:39.10:0,39,433 0/1:20,12:32:99:292,0,558 0/1:6,11:17:99:323,0,151 0/0:7,0:7:18.05:0,18,208 0/1:3,8:11:36.36:252,0,36 0/0:26,0:26:69.16:0,69,784 0/1:11,9:20:99:252,0,304 0/1:11,8:19:99:199,0,332 0/1:6,4:10:99:110,0,171 0/0:37,0:37:99:0,111,1295 0/0:22,0:22:57.17:0,57,692 0/1:10,10:20:99:299,0,283 0/0:17,0:18:48.13:0,48,565 1/1:0,7:7:21.07:261,21,0 1/1:1,12:13:8.51:389,9,0 0/1:5,5:10:99:116,0,122 0/1:7,6:13:99:177,0,188 0/0:11,0:11:33.09:0,33,382 0/0:22,0:22:57.13:0,57,636 0/1:8,8:16:99:245,0,210 0/0:11,0:11:33.08:0,33,346 0/1:9,6:15:99:170,0,219 0/0:11,0:11:30.08:0,30,343 0/0:20,0:20:51.14:0,51,601 0/0:18,0:18:51.09:0,51,542 0/0:14,0:14:42.09:0,42,466 0/1:3,6:9:65.84:177,0,66 0/0:10,1:11:1.49:4,0,296 0/1:3,3:6:80.85:88,0,81 11 62378801 . T C 12542.56 . AC=26;AF=0.310;AN=84;BaseQRankSum=-3.913;DP=1811;Dels=0.00;FS=10.313;HRun=2;HaplotypeScore=1.6536;InbreedingCoeff=-0.0027;MQ=59.11;MQ0=0;MQRankSum=-0.772;QD=13.68;ReadPosRankSum=-1.482 GT:AD:DP:GQ:PL 0/0:26,0:26:78.22:0,78,927 0/0:33,0:33:84.25:0,84,1042 0/0:21,0:21:48.09:0,48,568 0/0:98,0:98:99:0,265,3315 0/1:61,51:113:99:1514,0,1731 0/1:44,37:81:99:983,0,1253 0/1:35,27:62:99:698,0,1089 0/0:72,0:72:99:0,187,2317 0/1:12,14:26:99:375,0,334 1/1:0,19:19:48.13:547,48,0 0/0:25,0:25:75.22:0,75,906 0/1:11,15:26:99:330,0,283 1/1:0,18:18:45.12:544,45,0 0/0:39,1:40:99:0,111,1328 0/1:55,39:94:99:878,0,1516 0/1:18,17:35:99:515,0,522 0/0:30,0:30:87.26:0,87,1055 0/1:14,14:28:99:381,0,381 0/0:33,0:33:93.28:0,93,1131 0/1:40,26:66:99:616,0,1181 0/1:19,30:50:99:812,0,524 0/1:9,20:30:99:540,0,237 0/0:117,0:117:99:0,328,4052 0/0:64,0:64:99:0,169,2127 0/1:52,26:78:99:635,0,1534 0/0:51,2:53:74.11:0,74,1616 1/1:0,29:29:84.19:955,84,0 1/1:0,21:21:57.16:695,57,0 0/1:12,8:20:99:188,0,344 0/1:14,10:26:99:183,0,443 0/0:28,0:28:75.23:0,75,941 0/0:68,0:68:99:0,172,2161 0/1:23,14:38:99:346,0,650 0/0:27,0:27:75.23:0,75,937 0/1:8,11:19:99:309,0,217 0/0:31,0:31:87.23:0,87,1025 0/0:41,1:42:76.57:0,77,1171 0/0:33,0:33:87.24:0,87,1054 0/0:31,0:31:93.28:0,93,1129 0/1:12,13:25:99:338,0,327 0/0:21,0:22:51.11:0,51,584 0/1:7,6:13:99:164,0,221 11 62394354 . T G 127.59 . AC=13;AF=0.155;AN=84;BaseQRankSum=-13.225;DP=942;Dels=0.00;FS=164.107;HRun=2;HaplotypeScore=0.8608;InbreedingCoeff=-0.2223;MQ=58.56;MQ0=0;MQRankSum=-0.257;QD=0.50;ReadPosRankSum=-4.435 GT:AD:DP:GQ:PL 0/0:7,2:9:21.06:0,21,238 0/0:15,6:21:45.12:0,45,512 0/0:10,6:16:1.65:3,0,273 0/0:16,20:36:15.89:0,16,520 0/1:12,16:28:19.57:20,0,365 0/0:8,11:19:0.40:0,0,259 0/0:16,10:26:48.14:0,48,559 0/1:7,9:16:36.07:36,0,158 0/0:14,8:23:18.19:0,18,432 0/0:14,7:21:15.50:0,15,440 0/1:10,11:21:24.94:25,0,306 0/1:4,5:9:36.27:36,0,124 0/1:5,5:10:12.63:13,0,120 0/1:9,13:22:11.31:11,0,266 0/0:39,25:64:40.31:0,40,1202 0/1:9,16:25:20.27:20,0,271 0/0:9,12:21:27.06:0,27,300 0/0:9,8:17:1.56:4,0,154 0/0:21,9:30:21.80:0,22,686 0/0:20,14:34:55.37:0,55,607 0/0:16,10:26:11.16:0,11,490 0/0:17,10:27:29.45:0,29,558 0/0:15,9:24:44.79:0,45,475 0/0:8,14:22:21.05:0,21,226 0/0:9,12:21:1.65:3,0,283 0/0:10,14:24:27.05:0,27,311 0/0:12,7:19:36.09:0,36,405 0/1:13,10:23:15.01:15,0,386 0/0:12,6:18:33.09:0,33,377 0/0:11,11:22:27.07:0,27,304 0/0:9,7:16:27.08:0,27,313 0/0:18,13:31:50.01:0,50,583 0/1:9,5:14:8.18:8,0,241 0/1:15,6:21:10.98:11,0,467 0/0:16,7:24:8.15:0,8,450 0/0:15,6:21:42.12:0,42,483 0/1:17,11:28:33.59:34,0,485 0/0:13,5:18:39.06:0,39,418 0/0:8,7:15:24.05:0,24,264 0/1:8,14:22:6.36:6,0,244 0/1:10,8:18:25.79:26,0,220 0/0:13,6:20:39.08:0,39,426 11 62397114 . T C 4159.03 . AC=10;AF=0.119;AN=84;BaseQRankSum=-4.992;DP=1713;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.2529;InbreedingCoeff=-0.1351;MQ=58.36;MQ0=0;MQRankSum=4.988;QD=12.64;ReadPosRankSum=0.211 GT:AD:DP:GQ:PL 0/0:24,0:24:66.20:0,66,811 0/0:25,0:25:69.18:0,69,826 0/0:25,0:25:72.22:0,72,861 0/0:81,0:81:99:0,223,2688 0/0:75,0:75:99:0,205,2497 0/1:47,22:69:99:547,0,1419 0/1:26,29:55:99:756,0,650 0/0:55,0:56:99:0,147,1800 0/1:12,16:28:99:372,0,294 0/1:4,13:17:92.12:339,0,92 0/0:31,0:31:84.23:0,84,1007 0/0:42,0:42:99:0,108,1336 0/0:23,0:23:63.19:0,63,765 0/0:24,0:24:69.21:0,69,834 0/0:110,0:110:99:0,280,3346 0/0:37,0:37:99:0,111,1301 0/0:25,0:25:72.17:0,72,822 0/0:24,0:25:69.20:0,69,820 0/0:59,0:59:99:0,153,1832 0/0:60,0:60:99:0,144,1794 0/0:39,0:39:99:0,108,1285 0/0:48,0:48:99:0,126,1516 0/0:92,0:92:99:0,241,2936 0/0:40,0:40:99:0,108,1330 0/0:54,0:54:99:0,147,1806 0/0:47,0:47:99:0,123,1548 0/1:8,9:17:99:225,0,243 0/1:15,17:32:99:495,0,408 0/0:25,0:25:66.20:0,66,802 0/1:11,13:24:99:360,0,323 0/0:24,0:24:72.22:0,72,862 0/0:46,0:46:99:0,135,1614 0/1:16,17:33:99:450,0,421 0/0:28,0:28:81.24:0,81,973 0/0:21,0:21:57.16:0,57,682 0/0:36,0:36:99:0,105,1250 0/0:76,0:76:99:0,196,2369 0/0:26,0:26:72.22:0,72,857 0/0:28,0:28:78.22:0,78,916 0/1:14,10:24:99:269,0,433 0/0:32,0:32:90.27:0,90,1075 0/1:17,13:30:99:345,0,479 11 62564811 . G T 1047.24 . AC=1;AF=0.012;AN=84;BaseQRankSum=-8.036;DP=3938;DS;Dels=0.00;FS=2.898;HRun=1;HaplotypeScore=2.4348;InbreedingCoeff=-0.0120;MQ=59.16;MQ0=0;MQRankSum=0.808;QD=13.60;ReadPosRankSum=-1.582 GT:AD:DP:GQ:PL 0/0:74,0:75:99:0,205,2596 0/0:77,0:78:99:0,208,2643 0/0:68,0:68:99:0,181,2336 0/0:199,0:199:99:0,497,6710 0/0:190,0:190:99:0,476,6570 0/0:144,0:144:99:0,358,4878 0/0:113,0:113:99:0,298,4041 0/0:138,1:139:99:0,358,4861 0/0:72,0:72:99:0,193,2498 0/0:73,0:73:99:0,199,2528 0/0:74,0:74:99:0,202,2604 0/0:67,0:67:99:0,181,2322 0/0:72,1:73:99:0,196,2495 0/0:65,0:65:99:0,175,2207 0/0:250,0:250:99:0,641,8278 0/0:55,0:55:99:0,147,1892 0/1:38,39:77:99:1093,0,1056 0/0:72,0:72:99:0,199,2526 0/0:88,0:88:99:0,235,2984 0/0:92,0:92:99:0,244,3115 0/0:97,0:98:99:0,253,3229 0/0:58,0:58:99:0,156,2016 0/0:205,0:205:99:0,506,6989 0/0:96,0:97:99:0,244,3337 0/0:139,0:139:99:0,337,4579 0/0:97,0:97:99:0,247,3326 0/0:55,0:55:99:0,144,1850 0/0:73,0:73:99:0,205,2574 0/0:65,0:65:99:0,175,2218 0/0:92,0:92:99:0,229,2985 0/0:57,0:57:99:0,150,1966 0/0:98,0:98:99:0,265,3356 0/0:66,0:66:99:0,169,2186 0/0:69,0:69:99:0,196,2488 0/0:62,0:62:99:0,169,2158 0/0:72,0:72:99:0,184,2385 0/0:91,1:92:99:0,231,3137 0/0:79,0:79:99:0,205,2640 0/0:67,0:67:99:0,190,2402 0/0:80,0:80:99:0,211,2720 0/0:72,0:72:99:0,193,2485 0/0:80,0:81:99:0,217,2767 11 62569105 . T TAC 9210.52 . AC=3;AF=0.036;AN=84;BaseQRankSum=-19.655;DP=5017;DS;FS=0.000;HRun=0;HaplotypeScore=355.6495;InbreedingCoeff=-0.0370;MQ=59.41;MQ0=0;MQRankSum=0.639;QD=19.85;ReadPosRankSum=0.014 GT:AD:DP:GQ:PL 0/0:83,0:83:99:0,241,3578 0/0:94,0:94:99:0,280,4158 0/0:84,1:85:99:0,195,3718 0/1:102,62:165:99:3019,0,3988 0/0:194,0:194:99:0,569,8526 0/0:174,0:171:99:0,509,7704 0/0:144,0:144:99:0,430,6364 0/0:149,0:148:99:0,439,6570 0/0:97,0:97:99:0,280,4219 0/0:90,0:90:99:0,256,3767 0/0:96,0:96:99:0,271,4024 0/0:90,0:90:99:0,262,3900 0/0:68,0:67:99:0,196,2912 0/0:75,0:75:99:0,214,3229 0/0:246,0:246:99:0,716,10605 0/0:85,0:85:99:0,244,3614 0/0:98,0:98:99:0,280,4118 0/0:108,0:108:99:0,307,4601 0/0:144,0:144:99:0,418,6223 0/0:160,0:160:99:0,452,6716 0/0:153,0:153:99:0,445,6607 0/0:119,0:119:99:0,355,5285 0/1:122,91:213:99:4431,0,4629 0/0:136,0:134:99:0,400,5915 0/0:193,0:190:99:0,563,8505 0/0:157,0:151:99:0,461,6919 0/0:77,0:77:99:0,223,3346 0/1:51,35:86:99:1761,0,1793 0/0:88,0:88:99:0,259,3893 0/0:91,0:91:99:0,271,4067 0/0:116,0:116:99:0,343,5067 0/0:136,0:136:99:0,400,5933 0/0:128,0:128:99:0,367,5429 0/0:86,0:86:99:0,250,3764 0/0:76,0:76:99:0,217,3267 0/0:94,0:94:99:0,268,3983 0/0:152,0:152:99:0,436,6505 0/0:91,0:91:99:0,271,4071 0/0:110,0:110:99:0,325,4781 0/0:93,0:93:99:0,274,4065 0/0:70,0:70:99:0,205,3058 0/0:107,0:107:99:0,313,4711 11 62623051 . T C 496.09 . AC=3;AF=0.036;AN=84;BaseQRankSum=5.730;DP=738;Dels=0.00;FS=12.122;HRun=0;HaplotypeScore=0.3589;InbreedingCoeff=-0.0378;MQ=59.11;MQ0=0;MQRankSum=0.314;QD=8.27;ReadPosRankSum=2.647 GT:AD:DP:GQ:PL 0/0:25,0:25:63.19:0,63,775 0/0:14,0:14:36.11:0,36,454 0/0:15,0:15:45.14:0,45,557 0/1:13,6:19:99:193,0,309 0/0:19,0:19:57.18:0,57,702 0/0:14,0:14:36.11:0,36,466 0/0:7,0:7:15.05:0,15,192 0/0:8,0:8:18.06:0,18,230 0/0:20,0:20:54.17:0,54,665 0/0:20,0:20:48.15:0,48,594 0/0:13,0:13:36.11:0,36,450 0/0:19,0:19:54.17:0,54,661 0/0:11,0:11:30.09:0,30,364 0/0:13,0:13:39.12:0,39,467 0/0:42,0:42:99:0,114,1412 0/0:7,0:7:21.06:0,21,233 0/0:15,0:15:42.13:0,42,515 0/0:11,0:11:27.08:0,27,341 0/0:17,0:17:51.16:0,51,636 0/0:27,0:27:69.22:0,69,879 0/0:20,0:20:57.18:0,57,716 0/0:23,0:23:54.17:0,54,711 0/1:14,12:26:99:313,0,398 0/0:13,0:13:33.11:0,33,429 0/0:14,0:14:33.11:0,33,438 0/0:11,0:11:30.09:0,30,368 0/0:12,0:12:33.10:0,33,394 0/1:12,3:15:66.10:66,0,343 0/0:22,0:22:54.17:0,54,672 0/0:13,0:13:39.12:0,39,469 0/0:14,0:14:39.12:0,39,474 0/0:29,0:29:81.24:0,81,996 0/0:20,0:20:60.19:0,60,735 0/0:17,0:17:48.15:0,48,596 0/0:19,0:19:45.13:0,45,562 0/0:14,0:14:39.11:0,39,471 0/0:26,0:27:63.19:0,63,794 0/0:18,0:18:48.15:0,48,599 0/0:17,0:17:42.13:0,42,539 0/0:23,0:23:60.19:0,60,756 0/0:18,0:18:51.16:0,51,629 0/0:16,0:16:48.13:0,48,567 11 62761320 . A C 424.25 . AC=4;AF=0.048;AN=84;BaseQRankSum=-23.664;DP=2047;Dels=0.00;FS=158.907;HRun=1;HaplotypeScore=1.9663;InbreedingCoeff=-0.0594;MQ=58.89;MQ0=0;MQRankSum=-0.331;QD=2.15;ReadPosRankSum=-9.097 GT:AD:DP:GQ:PL 0/0:26,13:39:2.87:0,0,682 0/0:39,11:50:54.96:0,55,1148 0/0:31,9:40:72.14:0,72,795 0/0:32,33:65:62.48:0,62,869 0/0:28,30:58:47.43:0,47,732 0/0:37,10:48:87.10:0,87,911 0/0:20,3:23:45.12:0,45,516 0/0:31,11:42:84.11:0,84,880 0/0:32,12:44:57.47:0,57,843 0/0:21,17:38:54.12:0,54,605 0/0:34,12:47:41.07:0,41,1003 0/0:38,7:45:90.21:0,90,1033 0/0:35,11:46:73.54:0,74,1035 0/0:36,17:53:59.81:0,60,983 0/0:93,47:140:19.75:0,20,2682 0/0:26,10:37:7.87:0,8,597 0/0:28,7:35:51.54:0,52,822 0/0:22,17:39:13.75:0,14,565 0/1:28,22:50:86:86,0,816 0/0:76,8:84:99:0,186,2106 0/1:25,26:51:99:144,0,655 0/0:35,8:43:74.56:0,75,1045 0/0:39,32:71:68.24:0,68,949 0/0:34,4:38:81.14:0,81,893 0/0:39,9:49:54.61:0,55,876 0/0:29,6:36:69.11:0,69,742 0/0:28,4:32:60.52:0,61,885 0/0:39,15:54:68.73:0,69,1182 0/1:26,17:43:64.88:65,0,651 0/0:29,9:38:31.08:0,31,800 0/0:23,8:32:40.59:0,41,731 0/0:45,12:57:88.93:0,89,1315 0/0:39,9:48:81.56:0,82,1152 0/0:32,6:38:62.50:0,63,871 0/0:32,15:47:44.94:0,45,967 0/0:41,9:50:85.50:0,85,1122 0/1:27,26:53:99:216,0,700 0/0:32,15:47:81.14:0,81,881 0/0:40,13:53:80.49:0,80,1078 0/0:38,13:52:80.54:0,81,1103 0/0:39,10:49:43.23:0,43,1069 0/0:32,9:42:41.89:0,42,915 11 62768233 . A C 133.28 . AC=5;AF=0.060;AN=84;BaseQRankSum=-13.537;DP=2351;Dels=0.00;FS=1297.305;HRun=2;HaplotypeScore=1.3920;InbreedingCoeff=-0.0894;MQ=58.86;MQ0=0;MQRankSum=-0.086;QD=0.55;ReadPosRankSum=-13.496 GT:AD:DP:GQ:PL 0/0:41,16:57:24.72:0,25,1201 0/0:43,18:61:99:0,123,1394 0/0:27,18:45:14.21:0,14,885 0/0:50,27:77:99:0,114,1599 0/0:35,26:61:46.02:0,46,1144 0/0:30,17:47:90.28:0,90,1108 0/0:40,24:64:99:0,115,1292 0/0:31,11:42:93.27:0,93,1095 0/0:44,14:58:77.07:0,77,1393 0/0:29,15:44:64.57:0,65,980 0/0:38,15:53:99:0,111,1273 0/0:34,13:47:96.27:0,96,1108 0/0:27,18:45:0.42:0,0,815 0/0:35,20:55:15.08:0,15,1050 0/0:111,58:170:99:0,123,3387 0/0:38,13:51:99:0,110,1270 0/1:29,21:50:27.01:27,0,817 0/0:18,13:31:21.91:0,22,578 0/0:55,25:80:58.80:0,59,1610 0/0:55,27:84:99:0,120,1710 0/0:50,20:70:99:0,117,1669 0/0:39,15:54:87.68:0,88,1283 0/0:40,25:65:89.76:0,90,1340 0/0:20,11:31:24.92:0,25,621 0/0:33,25:58:39.36:0,39,1078 0/1:29,19:48:40.37:40,0,932 0/0:28,10:38:25.48:0,25,860 0/0:38,21:59:0.64:8,0,1068 0/0:30,12:43:2.75:1,0,855 0/0:34,15:49:36.78:0,37,988 0/1:29,13:42:95.42:95,0,886 0/0:56,21:77:99:0,121,1752 0/0:42,15:57:99:0,123,1388 0/0:35,11:46:45.43:0,45,1174 0/1:41,20:61:12.25:12,0,1188 0/0:36,10:47:73.06:0,73,1192 0/0:42,15:57:85.19:0,85,1331 0/0:40,19:59:88.79:0,89,1318 0/0:28,7:35:28.21:0,28,884 0/0:29,17:46:53.16:0,53,891 0/1:26,16:42:49.36:49,0,813 0/0:29,16:45:60.57:0,61,956 11 63065056 . T A 2256.91 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.930;DP=4865;DS;Dels=0.00;FS=2.970;HRun=3;HaplotypeScore=2.3589;InbreedingCoeff=-0.0120;MQ=59.46;MQ0=0;MQRankSum=1.378;QD=11.75;ReadPosRankSum=1.233 GT:AD:DP:GQ:PL 0/0:65,0:65:99:0,175,2130 0/0:84,0:84:99:0,232,2858 0/0:79,0:79:99:0,220,2722 0/0:242,0:242:99:0,650,8139 0/0:235,0:235:99:0,650,8177 0/0:198,0:200:99:0,533,6763 0/0:174,0:174:99:0,457,5794 0/1:110,82:192:99:2303,0,3054 0/0:74,0:74:99:0,214,2544 0/0:85,0:85:99:0,235,2817 0/0:62,1:63:99:0,135,2029 0/0:95,0:95:99:0,265,3184 0/0:68,0:68:99:0,193,2323 0/0:73,0:74:99:0,193,2388 0/0:250,0:250:99:0,689,8415 0/0:53,0:53:99:0,153,1883 0/0:79,0:79:99:0,232,2824 0/0:80,0:80:99:0,223,2706 0/0:105,1:106:99:0,292,3570 0/0:108,0:108:99:0,298,3681 0/0:125,0:125:99:0,316,3907 0/0:73,0:73:99:0,199,2445 0/0:245,0:245:99:0,629,7972 0/0:194,0:195:99:0,524,6680 0/0:227,0:227:99:0,581,7356 0/0:186,0:186:99:0,478,6039 0/0:82,0:82:99:0,229,2775 0/0:84,0:84:99:0,229,2821 0/0:89,0:89:99:0,244,2959 0/0:86,0:86:99:0,235,2908 0/0:83,0:83:99:0,220,2740 0/0:83,0:84:99:0,211,2636 0/0:79,0:80:99:0,199,2469 0/0:94,0:94:99:0,265,3182 0/0:84,0:84:99:0,232,2836 0/0:98,0:98:99:0,259,3236 0/0:111,0:111:99:0,292,3606 0/0:92,0:92:99:0,259,3165 0/0:79,0:79:99:0,226,2735 0/0:94,0:94:99:0,247,3048 0/0:74,0:74:99:0,214,2569 0/0:94,0:94:99:0,265,3260 11 63138668 . GAAT G 158.39 . AC=5;AF=0.060;AN=84;BaseQRankSum=0.548;DP=2900;FS=1714.046;HRun=0;HaplotypeScore=241.8291;InbreedingCoeff=-0.0663;MQ=59.20;MQ0=0;MQRankSum=2.109;QD=0.42;ReadPosRankSum=-19.196 GT:AD:DP:GQ:PL 0/0:62,0:62:69.74:0,70,3124 0/0:60,0:60:99:0,125,3593 0/0:57,0:56:95.53:0,96,2954 0/1:131,0:131:99:100,0,5583 0/0:124,0:124:99:0,106,5917 0/0:112,0:111:46.10:0,46,4779 0/0:73,0:71:99:0,118,4015 0/1:92,0:91:37.37:37,0,4437 0/0:55,0:55:41.18:0,41,2500 0/0:68,0:68:92.82:0,93,3494 0/0:55,0:55:43.10:0,43,2591 0/0:49,0:49:19.43:0,19,2099 0/0:50,0:50:73.38:0,73,2666 0/0:44,0:44:18.50:0,18,1861 0/0:157,0:157:99:0,151,8963 0/0:43,0:43:66.53:0,67,2484 0/0:50,0:50:67.69:0,68,2842 0/0:50,0:50:99:0,100,2777 0/0:65,9:74:89.99:0,90,4246 0/0:88,0:88:61.49:0,61,4113 0/0:76,0:75:99:0,148,4380 0/0:50,0:50:58.52:0,59,2451 0/0:129,0:129:20.57:0,21,6665 0/0:88,0:87:27.11:0,27,4233 0/0:91,0:87:68.57:0,69,4507 0/0:96,0:95:99:0,149,4776 0/0:37,0:37:14.72:0,15,1643 0/0:48,0:48:56.81:0,57,2519 0/0:54,0:54:99:0,112,3082 0/0:66,0:66:99:0,108,3635 0/0:47,0:47:12.75:0,13,2094 0/0:94,0:94:72.25:0,72,4934 0/0:51,0:51:57.60:0,58,2581 0/0:54,0:54:27.88:0,28,2769 0/1:49,0:49:30.10:30,0,2296 0/1:61,0:61:22.27:22,0,2894 0/1:47,0:47:74.01:74,0,2379 0/0:62,0:62:9.16:0,9,3268 0/0:60,0:60:99:0,123,3551 0/0:51,0:51:99:0,126,3034 0/0:39,0:39:34.40:0,34,2016 0/0:56,0:56:73.91:0,74,2906 11 63175593 . C T 1617.08 . AC=3;AF=0.036;AN=84;BaseQRankSum=-3.937;DP=1695;Dels=0.00;FS=8.375;HRun=0;HaplotypeScore=1.5153;InbreedingCoeff=-0.0370;MQ=59.37;MQ0=0;MQRankSum=-0.764;QD=13.25;ReadPosRankSum=-1.085 GT:AD:DP:GQ:PL 0/0:35,0:35:93.29:0,93,1150 0/0:30,0:30:84.25:0,84,1024 0/0:29,0:29:81.25:0,81,994 0/0:77,0:77:99:0,208,2729 0/0:77,0:77:99:0,226,2984 0/0:41,0:41:99:0,120,1599 0/1:15,27:42:99:837,0,440 0/0:56,0:56:99:0,163,2145 0/0:32,0:32:90.27:0,90,1093 0/0:28,0:28:81.25:0,81,1000 0/0:33,0:33:99:0,99,1189 0/0:26,0:26:75.24:0,75,937 0/0:27,0:27:72.22:0,72,887 0/0:31,0:31:87.27:0,87,1060 0/0:121,0:121:99:0,319,3893 0/0:21,0:21:60.18:0,60,708 0/0:38,0:38:99:0,105,1292 0/0:38,0:38:99:0,102,1263 0/0:62,0:62:99:0,171,2071 0/0:55,0:55:99:0,159,1942 0/0:45,0:45:99:0,132,1597 0/0:17,0:17:51.14:0,51,591 0/0:79,0:80:99:0,220,2913 0/0:51,0:51:99:0,141,1838 0/0:63,0:63:99:0,172,2274 0/0:48,0:48:99:0,132,1753 0/0:15,0:15:45.13:0,45,523 0/0:23,0:23:69.21:0,69,832 0/0:21,0:21:63.18:0,63,744 0/1:25,10:35:99:246,0,755 0/0:32,0:32:87.26:0,87,1055 0/0:47,0:47:99:0,129,1590 0/1:24,21:45:99:610,0,721 0/0:21,0:21:63.19:0,63,763 0/0:23,0:23:63.19:0,63,767 0/0:31,0:31:93.26:0,93,1093 0/0:49,0:49:99:0,126,1534 0/0:34,0:34:96.28:0,96,1158 0/0:24,0:24:69.21:0,69,845 0/0:29,0:29:87.21:0,87,996 0/0:29,0:29:78.23:0,78,951 0/0:34,0:34:96.29:0,96,1178 11 63175599 . G A 1317.38 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.969;DP=1898;Dels=0.00;FS=0.735;HRun=0;HaplotypeScore=1.9016;InbreedingCoeff=-0.0244;MQ=59.37;MQ0=0;MQRankSum=0.664;QD=16.26;ReadPosRankSum=-0.787 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,111,1238 0/0:35,0:35:96.24:0,96,1048 0/0:31,0:31:90.24:0,90,1005 0/0:81,0:81:99:0,214,2615 0/0:83,0:83:99:0,235,2866 0/0:47,0:47:99:0,138,1671 0/0:46,0:46:99:0,138,1667 0/0:67,0:67:99:0,190,2265 0/0:36,0:36:99:0,102,1148 0/0:31,0:31:90.22:0,90,974 0/0:37,0:37:99:0,108,1216 0/0:31,0:31:81.23:0,81,940 0/0:29,0:29:84.21:0,84,916 0/0:36,0:36:99:0,99,1075 0/0:133,0:134:99:0,355,3968 0/0:21,0:21:54.14:0,54,593 0/0:43,0:43:99:0,114,1299 0/0:38,0:38:99:0,105,1196 0/0:67,0:67:99:0,183,2022 0/0:57,0:57:99:0,159,1792 0/1:25,36:61:99:1083,0,595 0/1:10,10:20:99:296,0,259 0/0:86,0:86:99:0,238,2930 0/0:58,0:58:99:0,162,1950 0/0:80,0:80:99:0,220,2683 0/0:53,0:53:99:0,147,1789 0/0:20,0:20:60.15:0,60,667 0/0:27,0:27:78.19:0,78,849 0/0:21,0:21:63.16:0,63,694 0/0:40,0:40:99:0,111,1247 0/0:38,0:38:99:0,108,1222 0/0:49,0:49:99:0,138,1562 0/0:48,0:48:99:0,138,1489 0/0:30,0:30:87.24:0,87,983 0/0:29,0:29:84.18:0,84,885 0/0:30,0:30:84.23:0,84,947 0/0:52,0:52:99:0,144,1582 0/0:38,0:38:99:0,105,1192 0/0:26,0:26:72.17:0,72,790 0/0:30,0:30:90.24:0,90,994 0/0:34,0:34:90.24:0,90,1030 0/0:36,0:37:99:0,99,1100 11 63681513 . T C 162641.55 . AC=84;AF=1.000;AN=84;DP=4555;DS;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=2.9148;InbreedingCoeff=0.0000;MQ=59.32;MQ0=0;QD=35.71 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2265,184,0 1/1:0,67:67:99:2297,187,0 1/1:0,62:62:99:2263,184,0 1/1:0,243:243:99:9110,689,0 1/1:0,223:224:99:8475,635,0 1/1:0,169:169:99:6282,484,0 1/1:0,126:127:99:4551,352,0 1/1:0,168:168:99:6183,475,0 1/1:0,72:72:99:2497,199,0 1/1:0,59:59:99:2114,169,0 1/1:0,63:64:99:2192,178,0 1/1:0,63:63:99:2235,181,0 1/1:0,56:56:99:2042,163,0 1/1:0,78:78:99:2766,223,0 1/1:0,237:237:99:7825,623,0 1/1:0,87:88:99:3061,247,0 1/1:0,82:84:99:2837,226,0 1/1:0,83:83:99:3031,244,0 1/1:0,144:144:99:5037,406,0 1/1:0,170:170:99:5667,454,0 1/1:0,148:148:99:5041,397,0 1/1:0,113:113:99:3932,316,0 1/1:0,246:247:99:8997,689,0 1/1:0,109:109:99:4141,319,0 1/1:0,153:153:99:5737,442,0 1/1:0,125:125:99:4757,361,0 1/1:0,65:65:99:2262,184,0 1/1:0,88:88:99:3264,262,0 1/1:0,71:71:99:2461,205,0 1/1:0,73:73:99:2550,205,0 1/1:0,62:62:99:2218,181,0 1/1:0,114:114:99:3959,319,0 1/1:0,125:126:99:4317,343,0 1/1:0,67:67:99:2430,193,0 1/1:0,72:72:99:2581,208,0 1/1:0,75:75:99:2618,211,0 1/1:0,142:142:99:4923,400,0 1/1:0,100:100:99:3611,292,0 1/1:0,73:73:99:2617,214,0 1/1:0,78:78:99:2804,229,0 1/1:0,61:61:99:2201,181,0 1/1:0,69:69:99:2490,199,0 11 63721941 . G C 239.78 . AC=13;AF=0.155;AN=84;BaseQRankSum=-10.854;DP=1481;Dels=0.00;FS=422.878;HRun=1;HaplotypeScore=0.9533;InbreedingCoeff=-0.2152;MQ=58.25;MQ0=2;MQRankSum=0.653;QD=0.59;ReadPosRankSum=-9.340 GT:AD:DP:GQ:PL 0/0:27,10:37:33.50:0,33,662 0/0:18,7:25:6:0,6,443 0/0:16,7:23:11.45:0,11,426 0/0:47,35:82:48.51:0,49,1314 0/0:41,36:77:20.36:0,20,1059 0/0:28,14:42:47.17:0,47,576 0/0:24,10:34:42.13:0,42,538 0/0:26,17:43:45.12:0,45,557 0/0:13,10:23:27.08:0,27,335 0/0:21,6:27:10.58:0,11,449 0/0:11,4:15:18.05:0,18,207 0/1:13,7:20:4.50:4,0,250 0/1:10,5:15:24.41:24,0,67 0/0:19,9:28:2.93:0,0,508 0/0:43,15:58:11.29:0,11,1039 0/0:18,11:29:39.12:0,39,477 0/0:30,7:37:38.74:0,39,782 0/1:16,9:25:27.87:28,0,330 0/1:32,10:42:34.32:34,0,733 0/0:44,14:58:76.99:0,77,1289 0/0:35,10:46:30.57:0,31,699 0/0:32,9:42:43.53:0,44,746 0/1:39,24:63:18.98:19,0,1043 0/1:20,17:37:23.53:24,0,461 0/0:25,12:37:3.75:0,4,516 0/0:21,11:32:0.03:0,0,380 0/0:17,10:27:16.48:0,16,482 0/1:14,8:22:35:35,0,262 0/0:21,11:32:51.16:0,51,626 0/0:16,4:20:45.14:0,45,549 0/1:13,7:20:15.09:15,0,178 0/0:43,19:62:37.15:0,37,1077 0/0:20,10:31:27.09:0,27,341 0/0:15,6:21:1.42:0,1,284 0/1:16,6:22:24.93:25,0,350 0/1:14,5:19:31.99:32,0,272 0/1:29,14:43:66:66,0,638 0/0:21,6:27:45.14:0,45,553 0/0:22,7:29:51.14:0,51,624 0/0:21,10:31:23.49:0,23,565 0/1:27,11:38:30.45:30,0,564 0/1:26,13:39:43.48:43,0,564 11 63967443 . T TG 60.03 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.514;DP=2432;FS=305.948;HRun=2;HaplotypeScore=149.4529;InbreedingCoeff=-0.0193;MQ=58.19;MQ0=0;MQRankSum=0.213;QD=1.02;ReadPosRankSum=-11.194 GT:AD:DP:GQ:PL 0/0:44,0:44:45.93:0,46,747 0/0:37,9:45:20.76:0,21,819 0/0:28,0:28:51.22:0,51,633 0/0:111,0:111:99:0,138,2052 0/0:85,0:85:81.34:0,81,1705 0/0:70,0:70:99:0,110,1280 0/0:54,0:54:77.81:0,78,890 0/0:71,0:71:99:0,114,1354 0/0:51,0:51:0.80:0,1,822 0/0:63,0:63:80.92:0,81,1109 0/0:47,0:47:34.17:0,34,701 0/0:40,0:39:39.82:0,40,708 0/0:41,0:41:72.71:0,73,926 0/0:51,0:51:84.77:0,85,1048 0/0:138,0:137:99:0,136,2581 0/0:44,0:44:60.60:0,61,855 0/0:48,0:48:84.92:0,85,1124 0/0:39,0:39:15.66:0,16,649 0/0:55,13:66:31.88:0,32,1236 0/0:82,0:82:99:0,180,2265 0/1:59,0:59:99:115,0,635 0/0:40,0:40:45.73:0,46,891 0/0:107,0:107:97.90:0,98,1974 0/0:55,0:55:85.36:0,85,927 0/0:70,0:70:99:0,104,1435 0/0:71,0:70:65.13:0,65,1433 0/0:40,0:40:55.17:0,55,791 0/0:49,0:48:11.03:0,11,919 0/0:46,0:46:39.48:0,39,746 0/0:50,0:50:39.35:0,39,1009 0/0:30,1:31:35.61:0,36,441 0/0:70,0:69:99:0,130,1509 0/0:34,0:34:31.41:0,31,649 0/0:59,0:59:66.03:0,66,1089 0/0:54,0:53:65.51:0,66,1091 0/0:50,0:50:65.74:0,66,1141 0/0:55,0:54:84.15:0,84,1070 0/0:61,0:61:47.44:0,47,1237 0/0:58,0:56:44.78:0,45,1031 0/0:51,0:51:60.90:0,61,940 0/0:54,0:54:15.31:0,15,923 0/0:47,0:47:49.13:0,49,778 11 63967446 . C G 108.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=-14.977;DP=2303;Dels=0.00;FS=337.340;HRun=2;HaplotypeScore=3.1913;InbreedingCoeff=-0.0297;MQ=58.35;MQ0=0;MQRankSum=2.592;QD=1.06;ReadPosRankSum=-9.056 GT:AD:DP:GQ:PL 0/0:30,11:41:60.12:0,60,698 0/0:38,2:40:72.15:0,72,836 0/0:22,7:29:57.12:0,57,634 0/0:73,34:107:99:0,101,1825 0/0:54,25:79:6.02:0,6,1447 0/0:51,16:67:78.54:0,79,1164 0/0:41,8:49:78.19:0,78,951 0/0:47,19:66:93.06:0,93,1108 0/1:28,17:45:37.02:37,0,772 0/0:42,16:58:75.24:0,75,996 0/0:29,10:39:51.06:0,51,590 0/0:27,7:34:32.58:0,33,717 0/0:29,9:38:34.62:0,35,740 0/0:30,19:49:69.05:0,69,773 0/0:86,48:134:99:0,112,2233 0/0:36,6:42:71.63:0,72,788 0/0:35,10:46:42.49:0,42,765 0/0:29,11:40:10.88:0,11,676 0/0:50,2:53:99:0,108,1204 0/0:71,10:82:99:0,140,1814 0/1:34,23:58:99:134,0,794 0/0:29,11:40:32.75:0,33,791 0/0:66,40:106:75.02:0,75,1762 0/0:30,18:48:39.57:0,40,816 0/0:48,20:68:74.42:0,74,1299 0/0:49,21:71:49.56:0,50,1174 0/0:29,7:36:50.15:0,50,566 0/0:34,10:44:9.82:0,10,898 0/0:31,11:43:30.02:0,30,705 0/0:32,17:49:18.90:0,19,732 0/0:15,11:27:36.07:0,36,418 0/0:58,15:73:92.59:0,93,1331 0/0:25,8:33:20.44:0,20,505 0/0:38,21:59:59.83:0,60,1059 0/0:34,20:54:39.13:0,39,719 0/0:38,12:51:56.63:0,57,978 0/0:37,13:50:81.18:0,81,937 0/0:39,20:59:21.37:0,21,1046 0/0:33,19:52:18.96:0,19,780 0/0:37,11:48:37.85:0,38,895 0/0:35,16:51:20.80:0,21,807 0/0:32,13:45:29.78:0,30,809 11 63970997 . C G 179.24 . AC=6;AF=0.071;AN=84;BaseQRankSum=-5.038;DP=1373;Dels=0.00;FS=667.196;HRun=1;HaplotypeScore=0.8350;InbreedingCoeff=-0.0987;MQ=58.44;MQ0=0;MQRankSum=2.480;QD=0.83;ReadPosRankSum=-11.209 GT:AD:DP:GQ:PL 0/0:37,4:41:79.77:0,80,1250 0/0:25,3:28:69.05:0,69,769 0/0:19,4:23:48.14:0,48,571 0/1:34,13:47:42.99:43,0,1046 0/0:40,11:51:2.31:2,0,1195 0/0:36,6:42:96.27:0,96,1223 0/1:18,10:28:85.36:85,0,556 0/0:27,2:29:72.20:0,72,890 0/0:20,4:24:29.58:0,30,653 0/0:22,7:29:63.19:0,63,759 0/1:24,5:29:26.41:26,0,683 0/0:18,2:20:51.15:0,51,612 0/0:27,1:28:47.63:0,48,855 0/0:15,2:17:42.12:0,42,494 0/0:78,8:86:99:0,114,2445 0/0:23,4:28:3.58:0,4,717 0/0:28,6:34:21.80:0,22,814 0/0:17,3:20:18.01:0,18,545 0/0:38,4:42:25.13:0,25,1040 0/0:53,10:63:12.55:0,13,1457 0/1:32,9:41:11.22:11,0,958 0/0:27,5:32:17.64:0,18,874 0/0:45,10:55:99:0,132,1706 0/0:30,5:35:60.57:0,61,1034 0/0:31,2:33:58.04:0,58,1128 0/0:22,5:27:23.21:0,23,708 0/0:19,0:19:48.15:0,48,582 0/0:17,1:18:48.14:0,48,574 0/0:25,3:28:14.19:0,14,779 0/0:19,3:22:21.91:0,22,606 0/0:22,5:27:63.18:0,63,749 0/0:37,5:43:9.15:0,9,1079 0/0:32,6:38:60.16:0,60,1079 0/0:21,4:25:27.92:0,28,660 0/0:18,1:19:22.60:0,23,582 0/0:21,5:26:2:0,2,605 0/1:40,7:48:56.79:57,0,1173 0/0:32,4:36:96.28:0,96,1140 0/0:14,3:18:10.57:0,11,431 0/0:20,1:21:57.17:0,57,684 0/1:18,5:23:58.44:58,0,585 0/0:27,2:29:26.99:0,27,852 11 63979162 . C T 2302.88 . AC=5;AF=0.060;AN=84;BaseQRankSum=1.008;DP=2208;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.7320;InbreedingCoeff=-0.0633;MQ=59.12;MQ0=0;MQRankSum=2.012;QD=11.63;ReadPosRankSum=-1.413 GT:AD:DP:GQ:PL 0/0:34,0:34:87.25:0,87,1072 0/0:44,0:44:99:0,108,1343 0/0:30,0:30:78.23:0,78,944 0/0:111,0:111:99:0,268,3509 0/0:106,0:106:99:0,241,3198 0/0:78,0:78:99:0,181,2433 0/1:34,23:57:99:575,0,1058 0/0:82,0:83:99:0,193,2535 0/0:39,0:39:96.30:0,96,1218 0/0:40,0:40:99:0,105,1296 0/0:39,0:39:99:0,99,1201 0/0:37,0:37:99:0,105,1248 0/0:37,0:37:99:0,99,1234 0/0:34,0:34:87.23:0,87,1068 0/0:146,0:147:99:0,331,4300 0/0:34,0:34:90.24:0,90,1107 0/0:42,0:42:87.27:0,87,1137 0/0:38,0:38:96.26:0,96,1172 0/0:53,0:53:99:0,141,1741 0/0:80,0:80:99:0,196,2471 0/0:56,0:56:99:0,138,1705 0/0:38,0:39:90.28:0,90,1130 0/0:122,0:122:99:0,301,3904 0/0:64,0:64:99:0,141,1892 0/0:102,0:102:99:0,250,3235 0/0:76,0:76:99:0,175,2329 0/0:24,0:24:60.19:0,60,768 0/0:35,0:35:87.25:0,87,1030 0/0:32,0:32:87.24:0,87,1048 0/0:38,0:38:99:0,102,1238 0/1:16,12:28:99:272,0,472 0/0:73,0:73:99:0,184,2274 0/0:35,0:35:87.26:0,87,1087 0/0:28,0:30:78.24:0,78,950 0/0:30,0:30:81.24:0,81,992 0/0:39,0:39:99:0,105,1285 0/1:32,28:61:99:791,0,879 0/0:40,1:41:99:0,102,1272 0/1:11,13:24:99:388,0,307 0/0:38,0:38:93.25:0,93,1139 0/0:30,0:30:75.22:0,75,931 0/1:15,13:28:99:373,0,462 11 63993287 . C T 246.18 . 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T C 182419.68 . 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G C 56590.71 . AC=84;AF=1.000;AN=84;DP=2524;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=1.2377;InbreedingCoeff=-0.0000;MQ=27.76;MQ0=560;QD=22.42 GT:AD:DP:GQ:PL 1/1:0,39:40:63.18:749,63,0 1/1:0,50:50:99:1271,111,0 1/1:0,41:41:81.23:938,81,0 1/1:0,158:158:99:3398,280,0 1/1:0,95:95:99:1998,168,0 1/1:0,85:87:99:1874,156,0 1/1:0,73:73:99:1743,144,0 1/1:0,70:70:99:1384,114,0 1/1:0,24:24:39.11:451,39,0 1/1:0,39:39:72.19:824,72,0 1/1:0,44:44:84.18:927,84,0 1/1:0,35:35:63.18:736,63,0 1/1:0,35:35:69.19:800,69,0 1/1:0,50:50:84.24:978,84,0 1/1:0,142:142:99:2626,232,0 1/1:0,29:29:60.17:709,60,0 1/1:0,48:48:93.24:1028,93,0 1/1:0,43:43:90.21:971,90,0 1/1:0,71:73:99:1616,147,0 1/1:0,113:113:99:2416,208,0 1/1:0,84:85:99:2053,180,0 1/1:0,54:54:99:1430,123,0 1/1:0,132:132:99:3001,253,0 1/1:0,74:74:99:1888,156,0 1/1:0,92:93:99:2222,190,0 1/1:0,70:71:99:1331,108,0 1/1:0,43:43:72.21:849,72,0 1/1:0,35:35:72.21:857,72,0 1/1:0,40:40:75.22:890,75,0 1/1:0,32:32:63.15:719,63,0 1/1:0,32:32:72.19:809,72,0 1/1:0,93:94:99:2246,195,0 1/1:0,62:62:99:1536,129,0 1/1:0,38:38:78.22:926,78,0 1/1:0,38:38:87.23:978,87,0 1/1:0,34:34:84.22:958,84,0 1/1:0,71:72:99:1920,168,0 1/1:0,38:38:72.21:861,72,0 1/1:0,45:45:99:1158,99,0 1/1:0,41:41:75.21:864,75,0 1/1:0,40:40:69.20:825,69,0 1/1:1,41:42:72.21:834,72,0 11 64026634 . C T 780.69 . AC=4;AF=0.048;AN=84;BaseQRankSum=4.324;DP=444;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.1032;InbreedingCoeff=-0.0639;MQ=58.56;MQ0=0;MQRankSum=0.298;QD=11.65;ReadPosRankSum=1.990 GT:AD:DP:GQ:PL 0/0:12,0:12:33.08:0,33,367 0/0:10,0:10:27.08:0,27,318 0/0:3,0:3:6.02:0,6,67 0/0:15,0:15:36.11:0,36,428 0/0:24,0:24:60.18:0,60,725 0/0:7,0:7:21.06:0,21,246 0/0:9,0:9:18.06:0,18,231 0/0:16,0:16:42.12:0,42,508 0/0:7,0:8:18.06:0,18,228 0/1:6,4:10:99:121,0,118 0/0:7,0:7:18.05:0,18,208 0/0:7,0:7:15.04:0,15,180 0/0:11,0:11:24.04:0,24,253 0/0:6,0:6:18.04:0,18,193 0/1:13,8:21:99:225,0,279 0/1:4,8:12:99:230,0,99 0/0:9,0:9:24.06:0,24,256 0/0:5,0:5:12.03:0,12,139 0/0:20,0:20:51.12:0,51,598 0/0:13,0:13:33.07:0,33,358 0/0:10,0:10:21.05:0,21,239 0/0:4,0:4:9.02:0,9,97 0/1:14,10:24:99:290,0,406 0/0:7,0:7:21.06:0,21,253 0/0:13,0:13:33.09:0,33,394 0/0:10,0:10:27.07:0,27,316 0/0:5,0:5:15.03:0,15,162 0/0:2,0:2:3.01:0,3,36 0/0:10,0:10:27.06:0,27,299 0/0:6,0:6:9.02:0,9,95 0/0:11,0:11:33.09:0,33,375 0/0:8,1:9:21.06:0,21,251 0/0:10,0:10:27.07:0,27,302 0/0:6,0:6:15.04:0,15,177 0/0:8,0:8:24.06:0,24,252 0/0:10,0:10:27.08:0,27,327 0/0:22,0:22:60.15:0,60,671 0/0:7,0:7:21.04:0,21,217 0/0:14,0:14:39.11:0,39,453 0/0:8,0:8:21.04:0,21,215 0/0:9,0:9:21.06:0,21,253 0/0:14,0:14:36.10:0,36,407 11 64026639 . G A 2898.90 . AC=16;AF=0.190;AN=84;BaseQRankSum=-5.229;DP=422;Dels=0.00;FS=1.019;HRun=0;HaplotypeScore=1.0042;InbreedingCoeff=0.0482;MQ=58.66;MQ0=0;MQRankSum=0.364;QD=16.29;ReadPosRankSum=1.337 GT:AD:DP:GQ:PL 0/0:12,0:12:33.10:0,33,401 0/0:7,0:7:18.05:0,18,219 0/0:3,0:3:6.02:0,6,70 0/0:13,0:13:33.11:0,33,432 0/0:23,0:23:60.19:0,60,804 0/1:2,5:7:54.49:161,0,54 0/0:8,0:8:18.06:0,18,252 1/1:0,17:17:39.11:461,39,0 0/0:7,0:7:21.04:0,21,225 0/1:5,5:10:99:112,0,131 0/0:7,0:7:21.06:0,21,249 0/0:7,0:7:15.04:0,15,183 0/1:6,4:10:96.84:97,0,150 0/0:6,0:6:18.06:0,18,229 0/1:13,8:21:99:215,0,339 0/1:4,7:11:99:188,0,107 0/0:8,0:8:12.04:0,12,152 0/1:2,3:5:54.77:68,0,55 0/1:7,12:19:99:369,0,106 0/0:15,0:15:39.11:0,39,455 0/0:10,0:10:27.08:0,27,328 0/0:4,0:4:9.03:0,9,120 0/1:14,9:24:99:244,0,394 0/0:7,0:7:21.07:0,21,271 0/0:14,0:14:36.11:0,36,475 0/0:6,0:6:15.05:0,15,195 0/0:6,0:6:15.05:0,15,182 0/0:2,0:2:5.99:0,6,54 0/0:10,0:10:27.08:0,27,338 0/0:5,0:6:12.04:0,12,154 0/0:8,0:8:24.07:0,24,295 0/0:8,0:8:24.06:0,24,278 0/0:9,0:9:24.07:0,24,298 0/0:6,0:6:18.04:0,18,193 0/1:3,5:8:85.06:152,0,85 0/0:10,0:10:30.09:0,30,362 1/1:0,21:21:54.14:633,54,0 0/1:2,3:5:60.51:83,0,61 0/1:3,9:12:69.08:272,0,69 0/0:9,0:9:27.08:0,27,326 0/1:7,1:8:13.30:13,0,189 0/0:13,0:13:36.09:0,36,431 11 64026685 . C T 1000.40 . AC=17;AF=0.202;AN=84;BaseQRankSum=3.456;DP=229;Dels=0.00;FS=4.603;HRun=0;HaplotypeScore=0.1935;InbreedingCoeff=0.1176;MQ=57.79;MQ0=0;MQRankSum=0.381;QD=14.50;ReadPosRankSum=-0.149 GT:AD:DP:GQ:PL 1/1:0,3:3:9.03:104,9,0 0/1:4,1:5:24.09:24,0,104 0/0:3,0:3:9.02:0,9,103 0/0:6,0:6:15.02:0,15,156 0/0:6,0:7:18.05:0,18,210 0/0:3,0:3:9.01:0,9,91 0/0:5,0:5:12.03:0,12,138 0/0:8,0:8:18.05:0,18,207 0/1:4,5:9:99:119,0,104 0/1:0,3:3:0.97:72,6,0 0/0:9,0:9:24.07:0,24,293 0/0:4,0:4:12.03:0,12,124 0/0:2,0:2:6.02:0,6,65 0/0:5,0:5:15.04:0,15,172 0/0:14,0:14:42.11:0,42,468 0/0:9,0:10:27.07:0,27,298 0/0:2,0:2:6.02:0,6,69 0/1:2,1:3:28.77:29,0,56 0/0:12,0:12:27.08:0,27,317 0/1:4,5:9:99:109,0,103 0/1:0,5:5:0.97:76,6,0 0/1:2,1:3:26.23:26,0,59 0/0:6,0:6:18.05:0,18,206 0/0:6,0:6:15.04:0,15,174 0/0:5,0:5:12.03:0,12,135 0/0:4,0:4:12.02:0,12,126 0/1:1,3:4:23.47:64,0,23 1/1:0,2:2:6.02:76,6,0 0/0:7,0:7:21.06:0,21,240 0/0:1,0:1:3.01:0,3,32 0/0:8,0:8:21.06:0,21,238 0/1:1,4:5:22.75:128,0,23 0/1:2,4:6:28.37:113,0,28 0/1:1,4:5:17.45:134,0,17 0/1:2,2:4:58.26:67,0,58 0/0:7,0:7:21.03:0,21,222 0/0:11,0:11:33.05:0,33,349 0/1:2,1:3:32.56:33,0,33 0/0:4,0:4:9.03:0,9,105 0/0:4,0:4:12.03:0,12,139 0/0:5,0:5:9.03:0,9,109 0/0:2,0:2:6.02:0,6,73 11 64027666 . A C 483.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.260;DP=516;Dels=0.00;FS=6.709;HRun=0;HaplotypeScore=0.1642;InbreedingCoeff=-0.0260;MQ=59.08;MQ0=0;MQRankSum=1.456;QD=9.88;ReadPosRankSum=0.457 GT:AD:DP:GQ:PL 0/0:17,0:17:45.14:0,45,565 0/0:7,0:7:21.07:0,21,259 0/0:8,0:8:18.06:0,18,238 0/0:17,0:17:51.16:0,51,658 0/0:14,0:14:42.13:0,42,531 0/0:11,0:11:30.09:0,30,386 0/0:7,0:7:18.06:0,18,246 0/0:12,0:12:36.12:0,36,459 0/0:9,0:9:24.07:0,24,295 0/0:7,0:7:21.06:0,21,253 0/0:13,0:13:36.11:0,36,447 0/0:14,0:14:39.12:0,39,480 0/0:6,0:6:15.05:0,15,188 0/0:11,0:11:33.11:0,33,419 0/1:22,14:36:99:336,0,599 0/1:5,8:13:99:211,0,154 0/0:12,0:12:33.10:0,33,408 0/0:8,0:8:24.07:0,24,288 0/0:24,0:24:69.21:0,69,853 0/0:19,0:19:51.16:0,51,638 0/0:15,0:15:45.14:0,45,565 0/0:11,0:11:27.09:0,27,356 0/0:13,0:13:39.13:0,39,504 0/0:8,0:8:21.07:0,21,278 0/0:9,0:9:24.08:0,24,316 0/0:10,0:10:30.10:0,30,387 0/0:9,0:9:27.09:0,27,339 0/0:10,0:10:30.09:0,30,370 0/0:12,0:12:33.10:0,33,416 0/0:9,0:9:24.07:0,24,301 0/0:16,0:16:42.14:0,42,543 0/0:20,0:20:48.16:0,48,631 0/0:14,0:14:36.11:0,36,460 0/0:7,0:7:21.07:0,21,263 0/0:8,0:8:24.08:0,24,304 0/0:13,0:13:36.10:0,36,432 0/0:16,0:16:45.12:0,45,557 0/0:10,0:10:30.09:0,30,371 0/0:9,0:9:27.09:0,27,340 0/0:11,0:11:27.09:0,27,357 0/0:9,0:9:24.08:0,24,304 0/0:12,0:12:36.11:0,36,445 11 64034823 . A G 22.84 . AC=1;AF=0.013;AN=80;BaseQRankSum=1.483;DP=154;Dels=0.00;FS=8.589;HRun=1;HaplotypeScore=0.0944;InbreedingCoeff=-0.0790;MQ=57.89;MQ0=0;MQRankSum=-2.269;QD=4.57;ReadPosRankSum=1.663 GT:AD:DP:GQ:PL 0/0:4,0:4:9.03:0,9,117 0/0:3,0:3:9.03:0,9,112 0/0:2,0:2:6.02:0,6,76 0/0:9,0:9:27.08:0,27,333 0/0:2,0:2:6.02:0,6,76 0/0:4,0:4:12.02:0,12,137 0/0:3,0:3:9.03:0,9,118 0/0:3,0:3:6.02:0,6,82 0/0:1,0:1:3.01:0,3,38 0/0:4,0:4:12.04:0,12,146 0/0:3,0:3:9.03:0,9,108 0/0:2,0:2:6.02:0,6,72 0/0:2,0:2:3.01:0,3,33 0/0:7,0:7:18.06:0,18,232 0/0:8,0:8:21.07:0,21,262 0/0:4,0:4:12.04:0,12,149 0/0:5,0:5:15.04:0,15,175 0/0:3,0:3:9.03:0,9,104 0/0:7,0:7:18.04:0,18,218 0/0:3,0:3:6.02:0,6,80 ./. 0/0:6,0:6:18.06:0,18,221 0/0:4,0:4:9.03:0,9,111 0/0:1,0:1:3.01:0,3,37 0/0:5,0:5:12.03:0,12,144 0/0:3,0:3:9.02:0,9,103 0/0:5,0:5:12.04:0,12,146 0/0:2,0:2:6.02:0,6,76 ./. 0/0:5,0:5:15.05:0,15,187 0/0:3,0:3:9.03:0,9,113 0/1:3,2:5:35.72:68,0,36 0/0:4,0:4:9.03:0,9,120 0/0:2,0:2:6.02:0,6,74 0/0:2,0:2:6.02:0,6,66 0/0:2,0:2:6.02:0,6,73 0/0:5,0:5:12.03:0,12,132 0/0:1,0:1:3.01:0,3,37 0/0:7,0:7:18.06:0,18,228 0/0:5,0:5:15.05:0,15,180 0/0:5,0:5:15.04:0,15,176 0/0:2,0:2:6.02:0,6,71 11 64034866 . G A 383 . AC=13;AF=0.167;AN=78;BaseQRankSum=-0.298;DP=136;Dels=0.00;FS=1.030;HRun=1;HaplotypeScore=0.1467;InbreedingCoeff=0.0628;MQ=58.28;MQ0=0;MQRankSum=0.247;QD=11.61;ReadPosRankSum=0.668 GT:AD:DP:GQ:PL 0/0:4,0:4:12.04:0,12,142 0/0:3,0:3:3.01:0,3,32 0/0:2,0:2:6.01:0,6,67 0/0:6,0:6:18.05:0,18,226 0/0:2,0:2:3.01:0,3,38 0/1:2,1:3:28.79:29,0,43 0/1:3,2:5:30.98:60,0,31 0/0:3,0:3:6:0,6,59 0/0:4,0:4:6.02:0,6,78 0/0:3,0:3:6.02:0,6,64 0/0:1,0:1:3.01:0,3,32 0/0:3,0:3:9.03:0,9,104 ./. 0/1:3,2:5:51.94:61,0,52 0/0:12,0:12:30.08:0,30,345 0/0:3,0:3:9.03:0,9,104 0/0:3,0:3:9.02:0,9,103 0/0:4,0:4:12.04:0,12,154 0/0:5,0:5:15.03:0,15,167 0/0:5,0:5:15.03:0,15,168 0/0:1,0:1:3.01:0,3,31 0/1:1,2:3:28.77:56,0,29 0/0:7,0:7:21.06:0,21,256 1/1:0,2:2:6.02:67,6,0 0/0:5,0:5:15.05:0,15,188 0/1:0,1:1:1.76:30,3,0 0/0:2,0:2:6.02:0,6,71 0/0:2,0:2:6.02:0,6,69 ./. 0/1:1,1:2:17.68:30,0,18 0/1:2,1:3:24.41:24,0,66 0/0:4,0:4:12.03:0,12,141 0/0:1,0:1:3.01:0,3,34 ./. 0/0:2,0:2:6.02:0,6,69 0/0:5,0:5:15.04:0,15,169 0/0:5,0:5:9.03:0,9,101 0/0:4,0:4:12.03:0,12,139 0/0:2,0:2:6.02:0,6,76 1/1:0,4:4:9.03:104,9,0 0/1:1,1:2:31.78:32,0,33 0/1:1,2:3:21.65:32,0,22 11 64034911 . G A 11.38 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.021;DP=178;Dels=0.00;FS=2.584;HRun=0;HaplotypeScore=0.2641;InbreedingCoeff=-0.0693;MQ=58.71;MQ0=0;MQRankSum=-0.450;QD=2.84;ReadPosRankSum=-0.236 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,69 0/0:5,0:5:9.03:0,9,110 0/0:3,0:3:9.02:0,9,95 0/0:10,0:10:30.07:0,30,343 0/0:8,0:8:21.06:0,21,260 0/0:4,0:4:12.03:0,12,137 0/0:3,0:3:9.03:0,9,116 0/0:5,0:5:15.04:0,15,176 0/0:2,0:2:6.02:0,6,71 0/0:5,0:5:12.03:0,12,140 0/0:3,0:3:9.03:0,9,109 0/0:2,0:2:6.02:0,6,71 0/0:2,0:3:6.01:0,6,62 0/0:2,0:2:6.01:0,6,66 0/0:15,0:15:42.11:0,42,466 0/0:4,0:4:12.03:0,12,132 0/0:3,0:3:9.02:0,9,102 0/0:3,0:3:9.01:0,9,93 0/0:7,0:7:21.06:0,21,243 0/0:6,0:6:15.04:0,15,163 0/0:2,0:2:6.01:0,6,64 0/0:4,0:4:12.03:0,12,141 0/0:10,0:10:30.09:0,30,363 0/0:1,0:1:3.01:0,3,37 0/0:4,0:4:12.04:0,12,151 0/1:2,2:4:53.90:57,0,54 0/0:2,0:2:6.01:0,6,60 0/0:3,0:3:9.02:0,9,97 0/0:3,0:3:9.02:0,9,97 0/0:7,0:7:21.03:0,21,221 0/0:3,0:3:9.02:0,9,94 0/0:2,0:2:3.01:0,3,45 0/0:5,0:5:12.03:0,12,138 0/0:2,0:2:6.02:0,6,69 0/0:6,0:6:18.04:0,18,192 0/0:4,0:4:12.03:0,12,124 0/0:6,0:6:9.03:0,9,106 0/0:3,0:3:9.02:0,9,101 0/0:3,0:3:9.02:0,9,97 0/0:3,0:3:9.02:0,9,100 0/0:3,0:3:9.02:0,9,96 0/0:3,0:3:9.02:0,9,93 11 64071272 . G C 933.82 . AC=4;AF=0.048;AN=84;BaseQRankSum=-1.261;DP=754;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3935;InbreedingCoeff=0.4668;MQ=58.96;MQ0=0;MQRankSum=2.696;QD=19.87;ReadPosRankSum=0.401 GT:AD:DP:GQ:PL 0/0:14,0:14:33.11:0,33,434 0/0:17,0:17:39.11:0,39,495 0/0:9,0:9:24.08:0,24,308 0/0:16,0:16:45.15:0,45,602 0/0:13,0:13:27.09:0,27,370 0/0:14,0:14:33.11:0,33,444 0/0:9,0:9:24.08:0,24,312 0/0:7,0:7:18.06:0,18,242 0/0:16,0:16:42.13:0,42,519 0/0:19,0:19:51.16:0,51,645 0/0:14,0:14:39.13:0,39,506 0/0:20,0:20:54.17:0,54,692 0/0:12,0:12:36.11:0,36,458 0/0:13,0:13:39.11:0,39,475 0/0:59,0:59:99:0,153,1925 0/0:8,0:8:24.08:0,24,300 0/0:12,0:12:30.10:0,30,392 0/0:16,0:16:39.13:0,39,516 0/0:38,0:38:99:0,99,1190 0/0:63,0:63:99:0,159,2044 0/0:34,0:34:93.25:0,93,1149 0/0:23,0:23:54.17:0,54,718 0/0:18,0:18:45.15:0,45,627 0/0:14,0:14:36.12:0,36,490 0/0:14,0:14:27.09:0,27,383 0/0:9,0:9:18.06:0,18,252 0/0:16,0:16:39.12:0,39,481 0/0:14,0:14:33.10:0,33,438 0/0:12,0:12:33.08:0,33,405 0/0:12,0:12:33.10:0,33,423 0/0:8,0:8:21.07:0,21,264 0/0:40,2:42:63.58:0,64,1315 0/0:17,0:17:36.12:0,36,481 0/0:15,0:15:45.12:0,45,534 0/0:17,0:17:45.13:0,45,574 0/0:15,0:15:42.13:0,42,535 1/1:0,21:21:54.16:685,54,0 0/1:7,2:9:44.73:45,0,244 0/1:7,10:17:99:297,0,184 0/0:13,0:13:39.12:0,39,496 0/0:14,0:14:36.10:0,36,442 0/0:11,0:11:30.10:0,30,395 11 64081445 . G A 960.14 . AC=11;AF=0.134;AN=82;BaseQRankSum=3.645;DP=295;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3788;InbreedingCoeff=0.0187;MQ=58.23;MQ0=1;MQRankSum=0.687;QD=17.46;ReadPosRankSum=-0.430 GT:AD:DP:GQ:PL 0/0:7,0:7:18.04:0,18,193 0/0:8,0:8:24.06:0,24,277 0/0:7,0:7:21.05:0,21,230 0/0:10,0:10:30.08:0,30,336 0/0:7,0:7:21.06:0,21,247 ./. 0/1:1,5:6:17.20:168,0,17 0/0:6,0:6:18.05:0,18,217 0/0:5,0:5:15.03:0,15,154 0/0:3,0:3:9.02:0,9,93 0/0:5,0:5:15.04:0,15,166 0/0:4,0:4:9.02:0,9,103 0/0:3,0:3:9.02:0,9,96 0/1:4,2:6:55.92:56,0,104 0/0:15,0:15:42.10:0,42,476 0/0:7,0:7:21.06:0,21,242 0/0:9,0:9:27.08:0,27,313 0/0:2,0:2:3.01:0,3,45 0/0:9,0:9:27.07:0,27,298 0/0:14,0:14:42.09:0,42,468 0/0:10,0:10:30.07:0,30,337 0/1:4,7:11:91.81:220,0,92 0/0:9,0:9:27.07:0,27,318 0/1:1,1:2:22.63:32,0,23 0/0:6,0:6:15.05:0,15,184 0/1:2,3:5:32.73:72,0,33 0/0:6,0:6:18.04:0,18,192 0/0:8,0:8:21.06:0,21,248 0/0:2,0:2:3.01:0,3,32 0/1:1,2:3:22.52:62,0,23 0/1:3,2:5:58.88:59,0,87 0/0:11,0:11:33.09:0,33,380 0/0:11,0:11:27.07:0,27,307 0/0:5,0:5:12.03:0,12,144 0/0:11,0:11:30.09:0,30,364 0/0:11,0:11:30.07:0,30,343 0/0:13,0:13:30.08:0,30,329 0/0:8,0:8:24.04:0,24,256 0/0:8,0:8:24.06:0,24,269 1/1:0,6:6:18.06:220,18,0 0/1:2,2:4:51.06:54,0,51 0/1:2,5:7:51.68:160,0,52 11 64127744 . A G 2882.85 . AC=45;AF=0.625;AN=72;BaseQRankSum=2.948;DP=141;Dels=0.00;FS=0.708;HRun=1;HaplotypeScore=0.1206;InbreedingCoeff=0.1530;MQ=58.16;MQ0=0;MQRankSum=0.830;QD=23.63;ReadPosRankSum=-0.552 GT:AD:DP:GQ:PL 0/0:4,0:4:9.03:0,9,114 ./. ./. 1/1:0,1:1:3.01:41,3,0 0/0:2,0:2:6.02:0,6,75 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,73 1/1:0,1:1:3.01:42,3,0 0/1:2,1:3:30.29:30,0,66 1/1:0,1:1:3.01:40,3,0 1/1:0,2:2:6.02:77,6,0 1/1:0,8:8:24.07:296,24,0 1/1:0,1:1:3.01:39,3,0 0/1:2,3:5:58.91:94,0,59 1/1:0,8:8:24.05:292,24,0 1/1:0,7:7:18.06:235,18,0 1/1:0,3:3:9.03:113,9,0 0/1:2,0:2:1.76:0,3,28 1/1:0,5:5:12.03:142,12,0 1/1:0,11:11:30.08:367,30,0 0/1:4,2:6:54.88:55,0,127 0/1:4,1:5:24.98:25,0,113 1/1:0,1:1:3.01:33,3,0 ./. 1/1:0,2:2:6.02:73,6,0 ./. 1/1:0,4:4:12.01:140,12,0 1/1:0,4:4:9.03:122,9,0 0/1:1,2:3:28.77:63,0,29 0/0:3,0:3:6.02:0,6,75 0/0:4,0:4:12.03:0,12,135 0/1:1,3:4:27.95:70,0,28 0/0:1,0:1:3.01:0,3,36 0/1:5,2:7:55.07:55,0,166 1/1:0,4:4:9.03:108,9,0 0/1:1,1:2:30.11:30,0,31 1/1:0,3:3:9.02:104,9,0 0/1:2,7:9:45.49:212,0,45 0/1:5,5:10:99:155,0,158 0/0:2,0:2:6.02:0,6,72 ./. ./. 11 64496357 . G T 4047.68 . AC=13;AF=0.155;AN=84;BaseQRankSum=-14.204;DP=1078;Dels=0.00;FS=5.750;HRun=1;HaplotypeScore=0.8766;InbreedingCoeff=-0.0012;MQ=58.55;MQ0=0;MQRankSum=-1.669;QD=15.27;ReadPosRankSum=0.540 GT:AD:DP:GQ:PL 0/1:9,13:22:99:392,0,238 0/0:19,0:19:54.17:0,54,673 0/0:11,0:11:30.10:0,30,384 0/0:72,0:72:99:0,196,2626 0/0:72,0:72:99:0,175,2416 0/0:46,0:46:99:0,114,1542 0/0:32,0:32:84.28:0,84,1151 0/0:30,0:30:72.24:0,72,1005 0/1:13,8:22:99:190,0,413 0/0:13,0:13:33.11:0,33,437 0/1:8,7:15:99:198,0,226 0/1:14,9:23:99:217,0,429 0/1:9,10:19:99:289,0,284 0/0:21,0:21:60.19:0,60,768 0/0:57,0:57:99:0,138,1768 0/0:15,0:15:42.13:0,42,537 0/0:17,0:17:48.15:0,48,616 0/0:11,0:11:33.10:0,33,405 0/1:9,13:22:99:407,0,214 1/1:0,37:37:93.29:1173,93,0 0/0:25,0:25:69.20:0,69,859 0/0:24,0:24:60.19:0,60,769 0/0:65,0:65:99:0,175,2400 0/1:7,8:15:99:207,0,180 0/1:21,13:34:99:340,0,586 0/0:37,0:37:93.28:0,93,1251 0/1:11,9:20:99:217,0,354 0/0:12,0:12:36.11:0,36,442 0/1:12,6:18:96.20:96,0,386 0/0:20,0:20:51.16:0,51,655 0/0:13,0:13:33.11:0,33,440 0/0:41,0:41:99:0,114,1442 0/1:7,11:18:99:322,0,177 0/0:17,0:17:48.15:0,48,620 0/0:10,0:10:30.10:0,30,384 0/0:20,0:20:51.16:0,51,655 0/0:24,0:24:60.19:0,60,783 0/0:20,0:20:51.16:0,51,631 0/0:18,0:18:48.15:0,48,598 0/0:19,0:19:54.17:0,54,693 0/0:17,0:17:48.15:0,48,601 0/0:15,0:15:45.14:0,45,568 11 64521406 . G A 249.41 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.817;DP=438;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4248;InbreedingCoeff=-0.0182;MQ=58.95;MQ0=0;MQRankSum=-0.495;QD=15.59;ReadPosRankSum=-0.173 GT:AD:DP:GQ:PL 0/0:15,0:15:39.06:0,39,396 0/0:7,0:7:18.04:0,18,197 0/0:5,0:5:15.04:0,15,167 0/0:12,0:12:30.09:0,30,371 0/0:11,0:11:33.09:0,33,389 0/0:7,0:7:18.04:0,18,202 0/0:8,0:8:21.06:0,21,251 0/0:8,0:8:21.06:0,21,262 0/0:11,0:11:27.06:0,27,303 0/0:10,0:10:30.07:0,30,321 0/0:6,0:6:18.05:0,18,196 0/0:8,0:8:24.06:0,24,262 0/0:14,0:14:39.10:0,39,443 0/0:9,0:9:24.06:0,24,257 0/0:30,0:30:78.17:0,78,829 0/0:17,0:17:42.11:0,42,476 0/0:12,0:12:27.06:0,27,282 0/0:11,0:11:30.06:0,30,316 0/0:8,0:8:21.05:0,21,224 0/0:19,0:19:48.13:0,48,555 0/0:11,0:11:33.08:0,33,355 0/0:13,1:14:36.10:0,36,409 0/0:15,0:15:42.12:0,42,497 0/0:7,0:7:21.06:0,21,236 0/0:13,0:13:33.09:0,33,379 0/0:8,0:8:24.06:0,24,276 0/0:9,0:9:27.07:0,27,295 0/0:12,0:12:36.05:0,36,369 0/0:8,0:8:18.03:0,18,180 0/0:8,0:8:24.03:0,24,242 0/0:6,0:6:12.02:0,12,123 0/0:16,0:16:42.10:0,42,463 0/1:6,10:16:99:296,0,141 0/0:3,0:3:9.02:0,9,92 0/0:5,0:5:9.02:0,9,96 0/0:8,0:8:18.04:0,18,204 0/0:7,0:7:18.05:0,18,203 0/0:11,0:11:33.07:0,33,343 0/0:7,0:7:21.05:0,21,230 0/0:6,0:6:18.05:0,18,200 0/0:9,0:9:18.04:0,18,212 0/0:11,0:11:27.08:0,27,305 11 64666179 . A G 281.62 . AC=5;AF=0.060;AN=84;BaseQRankSum=-13.748;DP=2105;Dels=0.00;FS=541.304;HRun=2;HaplotypeScore=1.5135;InbreedingCoeff=-0.0845;MQ=57.66;MQ0=0;MQRankSum=3.610;QD=0.79;ReadPosRankSum=-12.851 GT:AD:DP:GQ:PL 0/0:40,24:64:56.93:0,57,1229 0/0:37,14:51:99:0,102,1212 0/0:22,8:30:24.59:0,25,640 0/1:63,31:94:99:147,0,1629 0/1:61,21:82:99:100,0,1764 0/0:56,10:66:99:0,149,1717 0/0:65,20:85:99:0,112,1906 0/0:46,9:56:99:0,109,1414 0/0:20,18:38:6.94:0,7,641 0/0:26,10:36:44.50:0,45,752 0/0:20,6:26:41.49:0,41,689 0/0:29,16:45:87.24:0,87,1021 0/0:32,9:42:93.13:0,93,1063 0/0:35,15:51:50.99:0,51,1100 0/0:89,15:104:99:0,183,2661 0/0:26,17:43:48.54:0,49,816 0/0:28,13:41:48.74:0,49,901 0/1:20,15:35:25.22:25,0,572 0/1:33,8:41:24.18:24,0,809 0/0:44,9:53:84.54:0,85,1233 0/0:36,8:44:40.28:0,40,1005 0/0:27,8:35:63.18:0,63,737 0/1:66,40:106:80.55:81,0,1959 0/0:47,14:61:10.69:0,11,1346 0/0:55,16:71:27.95:0,28,1499 0/0:42,16:59:99:0,112,1274 0/0:20,12:32:1.49:4,0,577 0/0:31,12:43:48.27:0,48,897 0/0:25,17:42:36.29:0,36,810 0/0:22,14:36:63.16:0,63,718 0/0:21,8:29:57.17:0,57,690 0/0:32,13:45:58.60:0,59,935 0/0:30,12:42:80.78:0,81,898 0/0:27,11:38:72.20:0,72,844 0/0:29,12:44:72.22:0,72,877 0/0:22,12:34:19.89:0,20,673 0/0:34,8:43:77.93:0,78,877 0/0:22,9:32:60.18:0,60,711 0/0:29,11:41:81.23:0,81,958 0/0:33,13:46:93.27:0,93,1102 0/0:28,20:48:2.38:1,0,771 0/0:39,11:50:55.56:0,56,1159 11 64666182 . C G 11228.38 . 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G A 101.32 . 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C T 331.35 . 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G C 39571.06 . AC=84;AF=1.000;AN=84;DP=1203;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.9275;InbreedingCoeff=-0.0000;MQ=58.84;MQ0=0;QD=32.89 GT:AD:DP:GQ:PL 1/1:0,23:23:63.16:714,63,0 1/1:0,19:19:45.13:546,45,0 1/1:0,15:15:45.12:518,45,0 1/1:0,99:99:99:3503,283,0 1/1:0,81:81:99:2998,241,0 1/1:0,35:35:99:1231,99,0 1/1:0,29:29:84.23:1017,84,0 1/1:0,51:51:99:1731,144,0 1/1:0,16:16:45.12:509,45,0 1/1:0,14:14:42.11:478,42,0 1/1:0,16:16:45.12:511,45,0 1/1:0,19:19:54.14:614,54,0 1/1:0,16:16:45.10:501,45,0 1/1:0,19:19:54.15:621,54,0 1/1:0,46:46:99:1380,120,0 1/1:0,30:30:78.20:877,78,0 1/1:0,14:14:39.10:439,39,0 1/1:1,14:15:36.07:397,36,0 1/1:1,31:32:90.19:993,90,0 1/1:0,32:32:93.26:1090,93,0 1/1:0,36:36:96.25:1129,96,0 1/1:0,28:28:78.13:881,78,0 1/1:0,77:78:99:2671,214,0 1/1:0,38:38:99:1350,111,0 1/1:0,45:45:99:1606,126,0 1/1:0,33:33:87.24:1089,87,0 1/1:0,17:17:48.10:524,48,0 1/1:0,14:15:36.08:395,36,0 1/1:0,15:15:45.13:528,45,0 1/1:0,16:16:48.09:516,48,0 1/1:0,15:15:42.11:473,42,0 1/1:0,35:35:96.24:1114,96,0 1/1:0,28:28:69.17:793,69,0 1/1:0,16:16:39.10:449,39,0 1/1:0,26:26:78.18:880,78,0 1/1:0,12:12:33.10:413,33,0 1/1:0,29:29:81.22:980,81,0 1/1:0,20:20:57.14:629,57,0 1/1:0,31:31:84.20:931,84,0 1/1:0,15:15:39.11:452,39,0 1/1:0,21:21:63.13:704,63,0 1/1:0,12:12:36.08:398,36,0 11 64764371 . C T 355.17 . 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T C 15577.13 . AC=59;AF=0.702;AN=84;BaseQRankSum=11.852;DP=695;Dels=0.00;FS=11.832;HRun=2;HaplotypeScore=0.4024;InbreedingCoeff=0.1791;MQ=58.74;MQ0=0;MQRankSum=-0.754;QD=26.36;ReadPosRankSum=-0.877 GT:AD:DP:GQ:PL 0/1:10,4:15:99:111,0,302 0/1:12,1:13:2.07:0,2,376 0/1:7,8:15:99:238,0,207 1/1:0,24:24:72.24:961,72,0 0/1:15,12:27:99:394,0,403 0/0:26,0:26:78.21:0,78,913 0/0:26,0:26:75.19:0,75,868 0/0:20,0:20:54.16:0,54,629 0/0:15,0:15:45.08:0,45,494 0/1:4,7:11:99:199,0,101 0/0:17,0:17:45.13:0,45,542 1/1:0,16:16:45.13:552,45,0 0/1:7,2:9:47.69:48,0,219 1/1:0,13:13:39.09:468,39,0 1/1:0,36:37:99:1226,102,0 0/1:11,7:18:99:205,0,303 1/1:0,9:9:27.07:322,27,0 0/1:7,3:10:49.32:49,0,198 0/1:15,10:25:99:252,0,410 1/1:0,24:24:66.17:798,66,0 1/1:0,13:13:39.12:477,39,0 1/1:0,17:17:48.15:586,48,0 1/1:0,27:27:81.26:1079,81,0 1/1:0,14:14:42.13:550,42,0 0/1:9,10:19:99:303,0,261 1/1:0,13:13:39.12:507,39,0 1/1:0,16:16:42.12:509,42,0 0/1:4,6:10:99:199,0,110 0/1:7,5:12:99:115,0,157 1/1:0,14:14:42.12:499,42,0 0/1:8,7:15:99:217,0,205 1/1:0,18:18:48.15:603,48,0 1/1:0,12:12:30.08:357,30,0 1/1:0,15:15:42.10:513,42,0 1/1:1,13:14:2.99:408,3,0 1/1:0,10:10:30.09:370,30,0 1/1:0,26:26:72.21:874,72,0 0/1:7,7:14:99:224,0,201 0/1:5,7:12:99:211,0,134 1/1:0,9:9:24.08:302,24,0 1/1:0,17:17:51.06:562,51,0 1/1:0,8:8:24.07:291,24,0 11 64789222 . C T 762.81 . AC=3;AF=0.036;AN=84;BaseQRankSum=-4.706;DP=1022;Dels=0.00;FS=0.865;HRun=0;HaplotypeScore=0.9075;InbreedingCoeff=-0.0371;MQ=58.51;MQ0=0;MQRankSum=0.046;QD=12.93;ReadPosRankSum=-0.898 GT:AD:DP:GQ:PL 0/0:21,0:21:60.18:0,60,727 0/0:17,0:17:48.15:0,48,588 0/0:12,0:12:33.09:0,33,393 0/0:56,0:56:99:0,147,1921 0/0:49,0:49:99:0,135,1760 0/0:38,0:38:99:0,105,1345 0/0:32,0:32:93.29:0,93,1203 0/0:26,0:26:75.23:0,75,949 0/0:18,0:18:51.14:0,51,611 0/0:13,0:13:39.12:0,39,474 0/1:10,9:19:99:259,0,318 0/0:14,0:14:42.10:0,42,485 0/0:10,0:10:30.09:0,30,363 0/0:23,0:23:63.18:0,63,755 0/0:50,0:50:99:0,132,1630 0/0:20,0:20:51.16:0,51,622 0/0:11,0:11:30.06:0,30,348 0/0:14,0:14:36.11:0,36,438 0/0:33,0:33:90.27:0,90,1095 0/0:34,0:34:90.27:0,90,1109 0/0:23,0:23:63.16:0,63,749 0/0:24,0:24:72.17:0,72,831 0/0:52,0:52:99:0,150,1898 0/0:26,0:26:75.24:0,75,968 0/0:31,0:31:84.27:0,84,1107 0/0:28,0:28:81.23:0,81,1047 0/0:15,0:15:39.11:0,39,458 0/0:15,0:15:42.10:0,42,502 0/1:10,13:23:99:383,0,253 0/0:25,0:25:69.18:0,69,841 0/0:18,0:18:45.13:0,45,537 0/0:29,0:29:75.22:0,75,901 0/0:16,0:16:45.14:0,45,553 0/0:18,0:18:54.17:0,54,659 0/0:24,0:24:69.20:0,69,822 0/0:22,0:22:60.15:0,60,698 0/0:32,0:34:87.23:0,87,1023 0/0:25,0:25:63.16:0,63,764 0/1:10,7:17:99:196,0,245 0/0:14,0:14:36.11:0,36,444 0/0:18,0:18:54.15:0,54,635 0/0:15,0:15:42.13:0,42,512 11 64806138 . G A 206.74 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.941;DP=904;Dels=0.00;FS=4.866;HRun=0;HaplotypeScore=0.5075;InbreedingCoeff=-0.0244;MQ=58.93;MQ0=0;MQRankSum=-0.407;QD=6.89;ReadPosRankSum=-0.288 GT:AD:DP:GQ:PL 0/1:13,7:20:99:158,0,371 0/1:6,4:10:99:111,0,197 0/0:18,0:18:48.15:0,48,596 0/0:26,0:26:75.24:0,75,970 0/0:32,0:32:93.29:0,93,1207 0/0:19,0:19:57.18:0,57,748 0/0:11,0:11:27.08:0,27,359 0/0:19,0:19:54.17:0,54,719 0/0:26,0:26:72.22:0,72,897 0/0:14,0:14:42.13:0,42,517 0/0:23,0:23:60.19:0,60,772 0/0:14,0:14:36.10:0,36,458 0/0:18,0:18:51.16:0,51,651 0/0:23,0:23:66.20:0,66,813 0/0:65,0:66:99:0,178,2180 0/0:20,0:20:54.14:0,54,659 0/0:18,0:18:54.15:0,54,667 0/0:13,0:13:39.09:0,39,454 0/0:32,0:32:75.23:0,75,962 0/0:39,0:39:99:0,111,1363 0/0:34,0:34:99:0,99,1245 0/0:13,0:13:39.12:0,39,494 0/0:31,0:31:93.30:0,93,1225 0/0:24,0:24:72.23:0,72,955 0/0:18,0:18:51.16:0,51,682 0/0:18,0:18:54.17:0,54,705 0/0:11,0:11:33.10:0,33,411 0/0:25,0:25:69.22:0,69,864 0/0:16,0:16:48.14:0,48,591 0/0:28,0:28:75.19:0,75,925 0/0:15,0:15:45.13:0,45,543 0/0:29,0:29:84.27:0,84,1057 0/0:23,0:23:63.20:0,63,800 0/0:15,0:15:45.11:0,45,544 0/0:15,0:15:42.13:0,42,534 0/0:13,0:13:39.12:0,39,483 0/0:23,0:23:66.18:0,66,790 0/0:16,0:16:45.14:0,45,558 0/0:19,0:19:57.15:0,57,685 0/0:22,0:22:57.18:0,57,725 0/0:20,0:20:60.16:0,60,719 0/0:15,0:15:42.11:0,42,526 11 64806270 . C T 388.72 . AC=3;AF=0.036;AN=84;BaseQRankSum=0.384;DP=552;Dels=0.00;FS=6.851;HRun=0;HaplotypeScore=0.2284;InbreedingCoeff=-0.0395;MQ=59.12;MQ0=1;MQRankSum=0.345;QD=10.80;ReadPosRankSum=0.336 GT:AD:DP:GQ:PL 0/1:4,6:10:84.32:151,0,84 0/1:3,5:8:76.96:158,0,77 0/0:11,0:11:24.07:0,24,286 0/0:28,0:28:69.22:0,69,896 0/0:20,0:20:54.17:0,54,699 0/0:15,0:15:36.11:0,36,462 0/0:16,0:16:42.13:0,42,520 0/0:15,0:15:33.10:0,33,429 0/0:6,0:6:18.05:0,18,208 0/0:10,0:10:30.08:0,30,339 0/0:19,0:19:51.13:0,51,584 0/0:7,0:7:21.04:0,21,223 0/0:4,0:4:12.03:0,12,139 0/0:13,0:13:39.11:0,39,440 0/0:35,0:35:99:0,99,1116 0/0:10,0:10:30.06:0,30,333 0/0:9,0:9:24.06:0,24,276 0/0:10,0:10:27.07:0,27,315 0/0:23,0:23:60.17:0,60,718 0/0:18,0:18:48.14:0,48,584 0/0:21,0:22:57.16:0,57,656 0/0:21,0:21:54.15:0,54,633 0/1:12,6:18:99:155,0,405 0/0:6,0:6:18.05:0,18,231 0/0:9,0:9:24.08:0,24,312 0/0:12,0:12:33.11:0,33,424 0/0:6,0:6:18.05:0,18,205 0/0:12,0:12:30.09:0,30,373 0/0:9,0:9:21.06:0,21,254 0/0:12,0:12:33.09:0,33,367 0/0:10,0:10:27.07:0,27,310 0/0:19,0:19:48.12:0,48,543 0/0:12,0:12:36.09:0,36,394 0/0:11,0:11:33.09:0,33,365 0/0:15,0:15:42.11:0,42,476 0/0:11,0:11:30.09:0,30,354 0/0:18,0:18:48.10:0,48,522 0/0:9,0:9:24.07:0,24,288 0/0:12,0:12:33.08:0,33,367 0/0:6,0:6:18.05:0,18,210 0/0:10,0:10:27.07:0,27,317 0/0:5,0:5:15.04:0,15,176 11 64812857 . G A 898.13 . AC=3;AF=0.036;AN=84;BaseQRankSum=-4.909;DP=832;Dels=0.00;FS=1.419;HRun=0;HaplotypeScore=0.5622;InbreedingCoeff=-0.0484;MQ=58.98;MQ0=1;MQRankSum=2.121;QD=13.21;ReadPosRankSum=-1.274 GT:AD:DP:GQ:PL 0/1:13,4:17:99:100,0,400 0/1:6,10:16:99:290,0,164 0/0:14,0:14:42.10:0,42,506 0/0:41,0:41:99:0,108,1473 0/0:30,0:30:81.27:0,81,1102 0/0:30,0:30:84.24:0,84,1097 0/0:19,0:19:45.15:0,45,614 0/0:23,0:23:60.19:0,60,810 0/0:16,0:16:48.11:0,48,572 0/0:16,0:16:48.15:0,48,608 0/0:19,1:20:54.17:0,54,698 0/0:12,0:12:30.10:0,30,390 0/0:11,0:11:33.11:0,33,426 0/0:14,0:14:39.12:0,39,494 0/0:67,0:67:99:0,169,2132 0/0:23,0:23:66.18:0,66,834 0/0:19,0:19:45.14:0,45,575 0/0:13,0:13:39.12:0,39,485 0/0:25,0:25:60.18:0,60,771 0/0:20,0:20:51.16:0,51,661 0/0:29,0:29:75.24:0,75,948 0/0:30,0:30:75.24:0,75,978 0/1:16,19:35:99:582,0,495 0/0:17,0:17:48.16:0,48,642 0/0:21,0:21:57.19:0,57,787 0/0:16,0:16:39.13:0,39,529 0/0:14,0:14:39.12:0,39,492 0/0:13,0:13:39.12:0,39,469 0/0:13,0:13:36.11:0,36,460 0/0:15,0:15:45.14:0,45,568 0/0:12,0:12:30.09:0,30,371 0/0:24,0:24:72.22:0,72,887 0/0:15,0:15:39.12:0,39,496 0/0:10,0:10:30.09:0,30,370 0/0:26,0:26:72.21:0,72,895 0/0:17,0:17:48.15:0,48,618 0/0:14,0:14:36.11:0,36,458 0/0:10,0:10:27.09:0,27,341 0/0:18,0:18:54.17:0,54,688 0/0:9,1:10:0.62:8,0,280 0/0:11,0:11:33.11:0,33,421 0/0:15,0:16:36.12:0,36,472 11 64813685 . G C 1848.64 . AC=3;AF=0.036;AN=84;BaseQRankSum=-5.847;DP=2265;Dels=0.00;FS=3.316;HRun=1;HaplotypeScore=1.8680;InbreedingCoeff=-0.0370;MQ=59.34;MQ0=0;MQRankSum=0.509;QD=12.93;ReadPosRankSum=0.115 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,114,1421 0/0:42,0:42:99:0,117,1497 0/0:28,0:28:78.24:0,78,978 0/0:115,0:115:99:0,292,3912 0/0:95,0:95:99:0,250,3418 0/0:62,0:62:99:0,175,2315 0/0:65,0:65:99:0,175,2292 0/0:75,0:75:99:0,193,2549 0/0:44,0:44:99:0,120,1527 0/0:53,0:53:99:0,141,1768 0/0:25,0:25:72.23:0,72,909 0/1:13,20:33:99:567,0,365 0/0:23,0:24:66.18:0,66,801 0/1:31,21:52:99:616,0,904 0/0:133,0:134:99:0,349,4401 0/0:50,0:50:99:0,135,1742 0/0:46,0:46:99:0,132,1630 0/0:45,0:45:99:0,126,1606 0/0:72,0:72:99:0,199,2456 0/0:89,0:89:99:0,238,3041 0/0:54,0:54:99:0,156,1961 0/1:30,28:58:99:741,0,927 0/0:123,0:123:99:0,319,4367 0/0:52,0:52:99:0,135,1841 0/0:73,0:73:99:0,196,2650 0/0:38,0:38:99:0,102,1343 0/0:28,0:28:78.25:0,78,997 0/0:38,0:38:99:0,111,1356 0/0:32,0:32:84.26:0,84,1060 0/0:41,0:41:99:0,114,1433 0/0:25,0:25:72.20:0,72,886 0/0:65,0:65:99:0,174,2194 0/0:59,0:59:99:0,160,2033 0/0:51,0:51:99:0,144,1805 0/0:43,0:44:99:0,108,1376 0/0:35,1:36:79.59:0,80,1200 0/0:65,0:66:99:0,178,2246 0/0:40,0:40:99:0,120,1502 0/0:36,0:36:99:0,99,1221 0/0:35,0:35:93.28:0,93,1171 0/0:39,0:39:99:0,111,1369 0/0:43,0:43:99:0,120,1526 11 64877197 . C T 709.32 . AC=5;AF=0.060;AN=84;BaseQRankSum=0.369;DP=378;Dels=0.00;FS=2.589;HRun=0;HaplotypeScore=0.3843;InbreedingCoeff=-0.0773;MQ=58.89;MQ0=0;MQRankSum=1.610;QD=11.63;ReadPosRankSum=0.481 GT:AD:DP:GQ:PL 0/0:11,0:11:33.09:0,33,395 0/0:10,0:10:27.08:0,27,327 0/0:9,0:9:27.07:0,27,294 0/0:10,0:10:24.06:0,24,311 0/0:15,0:15:42.13:0,42,537 0/0:10,0:10:24.08:0,24,316 0/0:3,0:3:9.03:0,9,118 0/0:4,0:4:9.03:0,9,116 0/0:4,0:4:12.03:0,12,136 0/0:9,0:9:27.08:0,27,322 0/1:6,2:8:44.34:44,0,170 0/0:7,0:7:21.06:0,21,240 0/0:4,0:4:12.03:0,12,139 0/0:13,0:14:39.11:0,39,449 0/1:15,18:33:99:485,0,386 0/0:11,0:11:33.09:0,33,382 0/1:2,2:4:52.96:63,0,53 0/0:2,0:2:6.02:0,6,65 0/0:13,0:13:30.07:0,30,344 0/0:8,0:8:24.06:0,24,279 0/0:16,0:17:39.12:0,39,488 0/0:7,0:7:15.05:0,15,197 0/0:8,0:8:24.08:0,24,307 0/0:3,0:3:9.01:0,9,102 0/0:5,0:5:15.05:0,15,195 0/0:4,0:4:12.04:0,12,157 0/0:10,0:10:24.07:0,24,302 0/0:10,0:10:30.08:0,30,350 0/1:5,4:9:93.75:94,0,148 0/0:8,0:8:24.06:0,24,263 0/0:4,0:4:12.04:0,12,153 0/0:10,0:10:27.08:0,27,335 0/0:7,0:7:21.06:0,21,234 0/0:9,0:9:27.08:0,27,324 0/0:11,0:11:30.08:0,30,358 0/0:13,0:13:30.09:0,30,364 0/0:14,0:14:42.13:0,42,510 0/0:9,0:9:27.07:0,27,311 0/1:3,4:7:92.29:120,0,92 0/0:16,0:16:42.12:0,42,504 0/0:3,0:3:9.03:0,9,104 0/0:5,0:5:15.05:0,15,183 11 64880743 . C T 1739.42 . AC=5;AF=0.060;AN=84;BaseQRankSum=-5.487;DP=990;Dels=0.00;FS=1.722;HRun=0;HaplotypeScore=1.1730;InbreedingCoeff=-0.0635;MQ=58.95;MQ0=0;MQRankSum=0.659;QD=13.48;ReadPosRankSum=-1.220 GT:AD:DP:GQ:PL 0/0:12,0:13:36.11:0,36,430 0/0:7,0:8:18.05:0,18,216 0/0:12,0:13:36.10:0,36,427 0/0:50,0:50:99:0,138,1737 0/0:57,0:57:99:0,138,1704 0/0:59,0:59:99:0,150,1829 0/0:24,0:25:57.18:0,57,732 0/0:31,0:31:87.25:0,87,1105 0/0:11,0:11:27.08:0,27,321 0/0:15,0:15:39.12:0,39,466 0/1:8,7:15:99:185,0,247 0/0:18,0:18:48.13:0,48,581 0/0:10,0:10:30.08:0,30,353 0/0:17,0:17:45.13:0,45,536 0/1:28,45:76:99:1244,0,622 0/0:20,0:20:54.15:0,54,636 0/1:4,6:10:99:145,0,125 0/0:20,0:20:54.13:0,54,616 0/0:23,0:25:54.14:0,54,633 0/0:30,0:30:72.21:0,72,881 0/0:29,0:29:78.20:0,78,920 0/0:9,0:9:24.07:0,24,283 0/0:67,1:68:99:0,141,2074 0/0:29,0:30:81.23:0,81,1022 0/0:30,0:31:78.25:0,78,1002 0/0:25,0:25:66.19:0,66,809 0/0:11,0:11:27.07:0,27,316 0/0:13,0:13:39.10:0,39,451 0/1:5,1:7:19.31:19,0,120 0/0:12,0:12:36.09:0,36,419 0/0:26,0:26:75.20:0,75,873 0/0:30,0:31:84.18:0,84,953 0/0:26,0:26:57.12:0,57,646 0/0:19,0:19:48.11:0,48,562 0/0:13,0:13:36.10:0,36,436 0/0:12,0:12:33.01:0,33,341 0/0:17,0:17:42.12:0,42,502 0/0:10,0:11:30.09:0,30,364 0/1:12,9:21:99:243,0,321 0/0:24,0:24:66.18:0,66,766 0/0:16,0:16:36.10:0,36,418 0/0:16,0:16:45.09:0,45,509 11 64950970 . C T 10167.95 . AC=26;AF=0.310;AN=84;BaseQRankSum=4.076;DP=1209;Dels=0.00;FS=12.518;HRun=1;HaplotypeScore=0.9908;InbreedingCoeff=-0.3369;MQ=58.78;MQ0=0;MQRankSum=1.266;QD=13.99;ReadPosRankSum=1.387 GT:AD:DP:GQ:PL 0/0:29,0:29:78.15:0,78,846 0/1:20,7:27:99:183,0,493 0/1:10,15:25:99:464,0,202 0/0:40,0:40:99:0,108,1353 0/1:17,15:32:99:441,0,433 0/1:17,18:35:99:535,0,499 0/1:12,18:30:99:491,0,310 0/1:12,12:24:99:348,0,368 0/1:7,13:21:99:306,0,177 0/1:13,7:20:99:192,0,340 0/1:14,12:27:99:321,0,393 0/0:19,1:20:54.15:0,54,626 0/1:19,8:27:99:193,0,515 0/0:26,0:26:66.18:0,66,761 0/1:34,44:78:99:1051,0,848 0/1:15,8:23:99:197,0,349 0/1:12,13:25:99:371,0,325 0/1:6,11:17:99:335,0,154 0/1:28,21:50:99:572,0,502 0/0:50,0:50:99:0,144,1732 0/1:21,21:44:99:494,0,537 1/1:1,37:38:54.71:1075,55,0 0/0:44,0:44:99:0,111,1406 0/0:21,0:21:51.16:0,51,660 0/0:25,0:25:75.19:0,75,903 0/1:6,14:20:99:426,0,170 0/1:10,6:16:99:139,0,275 0/1:5,12:17:99:350,0,120 0/1:12,8:20:99:227,0,341 0/1:10,7:17:99:158,0,220 0/1:13,14:27:99:337,0,341 0/1:23,26:49:99:702,0,577 0/0:37,0:37:96.26:0,96,1128 0/0:26,0:26:54.14:0,54,641 0/0:20,0:20:57.15:0,57,646 0/0:14,0:14:36.09:0,36,402 0/0:38,0:38:81.21:0,81,939 0/0:24,0:24:54.12:0,54,602 0/1:9,9:18:99:261,0,243 0/0:18,0:18:48.07:0,48,502 0/0:18,0:18:39.11:0,39,448 0/0:32,0:32:87.26:0,87,1057 11 64956204 . C T 18.18 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.578;DP=277;Dels=0.00;FS=7.286;HRun=0;HaplotypeScore=0.3585;InbreedingCoeff=-0.0405;MQ=58.02;MQ0=0;MQRankSum=0.804;QD=4.55;ReadPosRankSum=1.500 GT:AD:DP:GQ:PL 0/0:5,0:5:15.03:0,15,177 0/0:3,0:3:9.03:0,9,115 0/0:4,0:4:6.02:0,6,70 0/0:11,0:11:30.10:0,30,401 0/0:5,0:5:15.05:0,15,191 0/0:6,0:6:15.05:0,15,195 0/0:2,0:2:6.02:0,6,83 0/0:7,0:7:21.07:0,21,273 0/0:5,0:5:15.04:0,15,166 0/0:3,0:3:6.01:0,6,62 0/0:8,0:8:21.07:0,21,260 0/0:6,0:6:12.03:0,12,142 0/0:5,0:5:12.03:0,12,138 0/0:7,0:7:21.07:0,21,263 0/0:21,0:21:60.19:0,60,746 0/0:12,0:12:33.10:0,33,402 0/0:6,0:6:18.06:0,18,231 0/0:5,0:5:12.03:0,12,134 0/0:10,0:10:27.08:0,27,316 0/0:12,0:13:30.07:0,30,349 0/0:19,0:19:54.16:0,54,642 0/0:9,0:9:27.08:0,27,325 0/0:5,0:5:15.04:0,15,184 0/0:4,0:4:12.04:0,12,156 0/0:2,0:2:6.02:0,6,81 0/0:6,0:6:18.06:0,18,244 0/0:3,0:3:9.03:0,9,116 0/1:2,2:4:30.29:64,0,30 0/0:1,0:1:3.01:0,3,39 0/0:7,0:7:21.06:0,21,257 0/0:5,0:5:15.04:0,15,174 0/0:10,0:10:27.09:0,27,354 0/0:5,0:5:15.05:0,15,184 0/0:7,0:7:12.03:0,12,142 0/0:5,0:5:12.03:0,12,141 0/0:8,0:8:24.07:0,24,290 0/0:5,0:5:15.04:0,15,173 0/0:10,0:10:27.09:0,27,340 0/0:7,0:7:21.06:0,21,248 0/0:3,0:3:9.03:0,9,110 0/0:4,0:4:9.03:0,9,113 0/0:4,0:4:12.04:0,12,157 11 64985069 . A G 301.69 . AC=3;AF=0.036;AN=84;BaseQRankSum=-3.607;DP=827;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.9344;InbreedingCoeff=-0.0377;MQ=59.03;MQ0=0;MQRankSum=-0.068;QD=10.06;ReadPosRankSum=0.310 GT:AD:DP:GQ:PL 0/0:11,0:11:33.10:0,33,404 0/0:12,0:12:27.06:0,27,298 0/0:9,0:9:27.06:0,27,318 0/0:46,0:46:99:0,120,1475 0/0:46,0:46:99:0,129,1586 0/0:18,0:18:51.16:0,51,650 0/0:21,1:22:60.19:0,60,756 0/0:21,0:21:57.14:0,57,688 0/1:3,6:9:75.84:178,0,76 0/1:4,3:7:76.43:76,0,114 0/0:22,0:22:54.16:0,54,675 0/0:6,0:6:18.06:0,18,219 0/0:16,0:17:42.13:0,42,528 0/0:11,0:11:30.06:0,30,347 0/0:51,0:51:99:0,141,1683 0/0:13,0:13:39.10:0,39,463 0/0:9,0:9:27.08:0,27,331 0/0:14,0:14:33.10:0,33,416 0/0:24,0:24:69.20:0,69,842 0/0:28,1:29:72.22:0,72,900 0/0:26,0:27:66.20:0,66,811 0/0:17,0:17:51.14:0,51,595 0/0:49,0:49:99:0,138,1715 0/0:28,0:28:69.22:0,69,897 0/0:31,0:31:84.22:0,84,1010 0/0:22,0:22:57.18:0,57,713 0/0:22,0:22:60.16:0,60,723 0/0:12,0:12:33.10:0,33,397 0/0:9,0:9:21.06:0,21,252 0/0:14,0:14:39.12:0,39,488 0/0:7,0:7:18.04:0,18,193 0/0:26,0:26:69.21:0,69,858 0/0:23,0:24:54.16:0,54,652 0/0:12,0:12:36.10:0,36,416 0/0:14,0:14:39.12:0,39,485 0/1:9,5:14:99:123,0,267 0/0:31,0:31:66.17:0,66,807 0/0:17,0:17:51.11:0,51,582 0/0:16,0:16:39.12:0,39,479 0/0:10,0:11:30.09:0,30,370 0/0:15,0:15:39.11:0,39,472 0/0:12,0:12:36.11:0,36,433 11 64985072 . G A 1183.34 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.724;DP=868;Dels=0.00;FS=2.716;HRun=0;HaplotypeScore=0.8288;InbreedingCoeff=-0.0274;MQ=59.03;MQ0=0;MQRankSum=0.368;QD=11.72;ReadPosRankSum=-0.209 GT:AD:DP:GQ:PL 0/0:11,0:11:33.09:0,33,363 0/0:13,0:13:36.09:0,36,388 0/0:9,0:9:27.07:0,27,300 0/1:26,23:49:99:662,0,629 0/0:47,0:47:99:0,132,1622 0/0:21,0:21:60.18:0,60,739 0/0:22,0:22:66.20:0,66,819 0/0:23,0:23:63.14:0,63,716 0/0:10,0:10:30.08:0,30,333 0/0:8,0:8:24.04:0,24,246 0/0:22,0:22:54.15:0,54,630 0/0:6,0:6:18.04:0,18,196 0/0:17,0:17:42.11:0,42,484 0/0:11,0:11:30.07:0,30,328 0/0:54,0:54:99:0,153,1728 0/0:13,0:13:39.10:0,39,437 0/0:11,0:11:30.08:0,30,325 0/0:15,0:15:39.09:0,39,450 0/0:27,0:27:75.19:0,75,857 0/0:29,0:30:75.18:0,75,862 0/0:30,0:30:75.20:0,75,859 0/0:19,0:19:54.13:0,54,587 0/1:30,22:52:99:583,0,901 0/0:28,0:29:69.22:0,69,885 0/0:31,0:31:81.20:0,81,968 0/0:26,0:26:72.21:0,72,881 0/0:21,0:21:60.16:0,60,691 0/0:11,0:11:30.08:0,30,340 0/0:8,0:8:21.06:0,21,243 0/0:17,0:17:48.12:0,48,530 0/0:7,0:7:15.03:0,15,153 0/0:29,0:29:78.20:0,78,880 0/0:24,0:24:69.17:0,69,760 0/0:12,0:12:36.09:0,36,385 0/0:16,0:16:42.10:0,42,467 0/0:15,0:15:42.11:0,42,477 0/0:29,0:29:69.20:0,69,819 0/0:18,0:18:54.13:0,54,595 0/0:17,0:17:48.12:0,48,539 0/0:11,0:11:30.07:0,30,343 0/0:14,1:15:6.84:0,7,407 0/0:12,0:12:36.09:0,36,398 11 64990041 . G C 62417.80 . AC=65;AF=0.774;AN=84;BaseQRankSum=1.034;DP=2417;Dels=0.00;FS=2.940;HRun=0;HaplotypeScore=1.0879;InbreedingCoeff=0.1158;MQ=59.30;MQ0=0;MQRankSum=-1.275;QD=28.27;ReadPosRankSum=-1.567 GT:AD:DP:GQ:PL 0/0:27,0:27:72.23:0,72,919 0/1:24,13:37:99:380,0,766 1/1:0,37:37:99:1377,108,0 0/1:52,66:118:99:2151,0,1370 1/1:0,100:100:99:3789,283,0 1/1:0,59:59:99:2278,172,0 1/1:0,68:68:99:2444,181,0 0/1:42,22:64:99:606,0,1377 0/1:20,12:32:99:367,0,578 1/1:0,35:35:99:1235,99,0 0/1:18,11:29:99:323,0,592 1/1:0,35:35:99:1245,99,0 1/1:0,50:50:99:1731,135,0 1/1:0,41:42:99:1540,123,0 0/1:101,73:175:99:2083,0,2787 0/1:15,15:30:99:469,0,478 1/1:0,42:42:99:1391,111,0 1/1:0,41:41:99:1416,111,0 1/1:0,111:112:99:3900,310,0 1/1:0,87:87:99:3132,247,0 1/1:0,92:94:99:3283,262,0 1/1:0,55:55:99:1856,144,0 0/0:132,0:133:99:0,349,4690 1/1:0,51:51:99:1858,144,0 1/1:0,80:80:99:2981,220,0 1/1:0,61:61:99:2142,157,0 1/1:0,20:20:54.17:684,54,0 0/1:16,21:37:99:658,0,424 1/1:0,41:41:99:1413,111,0 1/1:0,46:46:99:1657,132,0 0/1:12,14:26:99:421,0,360 1/1:0,103:103:99:3629,283,0 0/1:29,23:52:99:729,0,826 1/1:1,32:33:93.29:1171,93,0 0/1:15,17:32:99:532,0,407 1/1:0,40:40:99:1456,114,0 0/1:45,49:94:99:1444,0,1308 0/0:49,0:49:99:0,132,1654 1/1:0,40:40:99:1401,108,0 1/1:0,47:47:99:1658,129,0 1/1:0,35:35:99:1250,102,0 0/1:17,11:28:99:336,0,559 11 65004301 . G T 67450.79 . AC=74;AF=0.881;AN=84;BaseQRankSum=9.184;DP=2280;Dels=0.00;FS=10.600;HRun=1;HaplotypeScore=8.0131;InbreedingCoeff=0.3189;MQ=58.96;MQ0=0;MQRankSum=-0.236;QD=30.55;ReadPosRankSum=-0.909 GT:AD:DP:GQ:PL 0/0:32,0:32:90.23:0,90,1018 0/1:28,17:45:99:392,0,805 1/1:0,35:35:96.29:1164,96,0 1/1:0,98:98:99:3376,277,0 1/1:0,113:113:99:4109,337,0 1/1:0,71:71:99:2364,187,0 1/1:0,63:63:99:2126,169,0 1/1:0,76:76:99:2629,214,0 1/1:0,34:34:96.27:1149,96,0 1/1:0,29:29:87.27:1057,87,0 1/1:0,41:41:99:1448,120,0 1/1:0,48:48:99:1492,123,0 1/1:0,34:34:93.28:1136,93,0 1/1:0,35:35:99:1214,99,0 1/1:1,132:134:99:4547,376,0 1/1:0,49:49:99:1660,138,0 1/1:0,31:31:93.27:1106,93,0 1/1:0,27:27:69.21:865,69,0 1/1:0,66:66:99:2265,190,0 1/1:0,108:109:99:3775,307,0 1/1:0,59:60:99:2090,171,0 1/1:0,54:54:99:1725,141,0 0/1:80,64:144:99:1717,0,2340 1/1:0,63:63:99:2221,178,0 1/1:0,70:70:99:2377,190,0 1/1:0,50:51:99:1721,138,0 1/1:0,32:32:96.24:1117,96,0 1/1:0,36:36:99:1203,99,0 1/1:0,28:28:78.24:943,78,0 1/1:0,27:27:78.21:928,78,0 1/1:0,32:32:90.27:1109,90,0 1/1:0,91:91:99:3064,253,0 0/1:33,25:58:99:697,0,796 1/1:0,35:35:99:1233,102,0 0/1:14,20:34:99:538,0,340 1/1:0,49:49:99:1726,141,0 0/1:22,38:61:99:1037,0,488 0/0:40,0:40:99:0,102,1144 1/1:0,33:33:84.26:1058,84,0 1/1:0,46:46:99:1598,132,0 1/1:0,25:25:66.19:812,66,0 0/1:18,23:41:99:662,0,422 11 65004309 . C T 10455.81 . AC=12;AF=0.143;AN=84;BaseQRankSum=6.971;DP=2377;Dels=0.00;FS=1.961;HRun=0;HaplotypeScore=7.5428;InbreedingCoeff=0.0278;MQ=58.89;MQ0=0;MQRankSum=-1.250;QD=16.11;ReadPosRankSum=1.162 GT:AD:DP:GQ:PL 0/0:32,0:32:90.18:0,90,963 0/0:47,0:47:99:0,132,1474 0/0:38,0:38:99:0,111,1241 0/0:109,0:109:99:0,289,3517 0/0:108,0:108:99:0,307,3602 0/0:74,0:74:99:0,193,2383 0/0:67,0:67:99:0,186,2235 0/0:84,0:84:99:0,226,2741 0/0:41,0:41:99:0,105,1260 0/0:36,0:36:93.26:0,93,1075 0/0:44,0:44:99:0,117,1344 0/0:49,0:49:99:0,132,1468 0/0:33,0:33:84.20:0,84,968 0/1:25,13:38:99:322,0,693 0/0:131,0:131:99:0,370,4218 0/0:50,0:50:99:0,144,1556 0/0:37,0:37:99:0,105,1196 0/1:20,11:31:99:288,0,453 0/1:36,25:61:99:722,0,999 0/1:53,57:111:99:1648,0,1345 1/1:0,66:66:99:2309,190,0 0/1:26,32:59:99:870,0,636 0/0:154,0:154:99:0,409,4823 0/0:63,0:63:99:0,168,2020 0/0:74,0:74:99:0,202,2449 0/0:53,2:56:99:0,101,1635 0/0:27,0:27:81.20:0,81,919 0/0:35,0:35:99:0,99,1137 0/0:26,0:26:75.21:0,75,875 0/0:30,0:30:78.21:0,78,902 0/0:30,0:30:87.23:0,87,1007 0/1:47,44:91:99:1220,0,1119 0/0:70,0:70:99:0,186,2147 0/0:35,0:35:99:0,102,1172 0/0:32,0:32:90.22:0,90,1023 0/0:48,0:48:99:0,135,1507 0/1:26,37:63:99:1068,0,674 0/0:41,0:41:99:0,108,1262 0/1:13,21:34:99:594,0,300 0/1:27,26:53:99:704,0,667 0/0:27,0:27:78.21:0,78,903 0/1:17,25:42:99:711,0,394 11 65064690 . G A 16441.28 . AC=15;AF=0.179;AN=84;BaseQRankSum=3.636;DP=2693;Dels=0.00;FS=9.177;HRun=0;HaplotypeScore=1.1927;InbreedingCoeff=0.1072;MQ=59.08;MQ0=0;MQRankSum=-0.313;QD=19.03;ReadPosRankSum=2.625 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1500,120,0 0/1:19,15:34:99:420,0,486 0/0:34,0:34:90.25:0,90,1081 0/1:97,80:177:99:2166,0,2723 0/0:171,2:173:99:0,431,5954 0/0:113,0:113:99:0,301,3824 0/0:108,0:108:99:0,277,3551 0/1:51,46:97:99:1267,0,1448 0/1:12,15:27:99:439,0,345 0/0:22,0:22:60.17:0,60,709 0/1:19,17:36:99:522,0,572 0/0:39,0:39:99:0,102,1230 0/0:27,0:27:78.18:0,78,916 0/0:42,0:42:99:0,117,1404 0/0:121,0:121:99:0,343,4058 0/0:39,0:39:99:0,111,1335 0/0:32,0:32:93.26:0,93,1109 0/0:34,0:34:87.26:0,87,1065 0/0:88,0:88:99:0,235,2829 0/0:108,0:108:99:0,289,3415 0/0:92,0:92:99:0,235,2846 0/0:64,0:64:99:0,172,2114 1/1:0,174:174:99:5888,454,0 0/0:93,0:93:99:0,223,2915 0/0:119,0:119:99:0,322,4060 0/0:89,0:89:99:0,238,3038 0/0:33,0:33:87.24:0,87,1029 0/0:34,0:34:93.26:0,93,1100 0/0:39,0:39:99:0,111,1331 0/0:33,0:33:93.27:0,93,1124 0/1:12,18:30:99:547,0,319 0/0:77,0:77:99:0,202,2500 0/1:25,30:55:99:867,0,659 0/0:29,0:29:84.21:0,84,979 0/1:23,19:42:99:556,0,622 0/0:44,0:44:99:0,120,1434 0/1:35,39:74:99:1077,0,896 0/1:16,19:35:99:569,0,501 0/0:37,0:37:99:0,105,1269 0/0:32,0:32:93.25:0,93,1083 0/0:34,0:34:99:0,99,1184 0/1:17,21:38:99:625,0,454 11 65143892 . G A 2968.22 . AC=5;AF=0.060;AN=84;BaseQRankSum=6.242;DP=1362;Dels=0.00;FS=0.902;HRun=0;HaplotypeScore=0.8155;InbreedingCoeff=-0.0633;MQ=59.22;MQ0=0;MQRankSum=1.088;QD=13.87;ReadPosRankSum=1.666 GT:AD:DP:GQ:PL 0/0:24,0:24:66.16:0,66,724 0/0:23,0:23:63.15:0,63,692 0/0:26,0:26:72.18:0,72,801 0/0:50,0:50:99:0,135,1689 0/0:46,0:46:99:0,123,1506 0/0:44,1:45:83.01:0,83,1424 0/0:32,0:32:81.24:0,81,1002 0/0:41,0:41:99:0,108,1338 0/0:27,0:27:72.19:0,72,823 0/0:20,0:20:57.14:0,57,633 0/0:29,0:29:78.20:0,78,866 0/0:24,0:24:69.19:0,69,772 0/0:18,0:18:51.13:0,51,573 0/0:27,0:27:81.20:0,81,882 0/1:42,45:87:99:1258,0,1058 0/1:8,20:28:99:645,0,137 0/0:32,0:32:90.24:0,90,1006 0/0:27,0:27:69.18:0,69,770 0/0:40,0:40:99:0,108,1246 0/0:50,0:50:99:0,132,1526 0/0:43,0:43:99:0,123,1376 0/0:26,0:26:78.19:0,78,852 0/0:61,0:61:99:0,172,2125 0/1:19,11:30:99:267,0,521 0/1:18,13:31:99:357,0,505 0/0:36,0:36:99:0,99,1203 0/0:18,0:18:51.13:0,51,554 0/1:20,18:38:99:537,0,514 0/0:24,0:24:63.14:0,63,676 0/0:28,0:28:78.20:0,78,859 0/0:22,0:22:57.16:0,57,669 0/0:27,0:27:75.21:0,75,852 0/0:30,0:30:81.21:0,81,915 0/0:22,0:22:60.15:0,60,677 0/0:33,0:34:90.22:0,90,984 0/0:26,0:26:69.18:0,69,774 0/0:36,0:36:99:0,102,1132 0/0:25,0:25:63.17:0,63,739 0/0:25,0:25:69.16:0,69,777 0/0:33,0:33:84.23:0,84,972 0/0:22,0:22:63.15:0,63,686 0/0:29,0:29:72.17:0,72,835 11 65144075 . T C 95434.65 . AC=84;AF=1.000;AN=84;BaseQRankSum=-0.897;DP=2972;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.7401;InbreedingCoeff=-0.0000;MQ=59.11;MQ0=0;MQRankSum=0.663;QD=32.11;ReadPosRankSum=-1.497 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2295,208,0 1/1:0,48:48:99:1558,141,0 1/1:0,52:52:99:1522,135,0 1/1:0,99:99:99:3306,274,0 1/1:0,89:89:99:3166,259,0 1/1:0,73:73:99:2322,190,0 1/1:0,62:62:99:2108,174,0 1/1:0,89:89:99:3038,250,0 1/1:0,63:64:99:2055,180,0 1/1:0,46:46:99:1435,129,0 1/1:0,34:34:96.22:1064,96,0 1/1:0,58:58:99:1872,168,0 1/1:0,47:47:99:1419,126,0 1/1:0,66:66:99:2137,189,0 1/1:0,165:166:99:5086,448,0 1/1:0,74:74:99:2456,214,0 1/1:0,69:69:99:2161,192,0 1/1:0,53:53:99:1747,153,0 1/1:0,117:117:99:3722,334,0 1/1:0,97:97:99:3183,280,0 1/1:0,97:97:99:2951,259,0 1/1:0,66:66:99:2154,193,0 1/1:0,109:110:99:3912,313,0 1/1:0,62:62:99:2009,159,0 1/1:0,63:63:99:2229,181,0 1/1:0,52:52:99:1735,144,0 1/1:0,46:46:99:1414,120,0 1/1:0,69:69:99:2167,195,0 1/1:0,47:47:99:1525,135,0 1/1:1,66:67:99:2027,147,0 1/1:0,64:65:99:2163,190,0 1/1:0,91:91:99:2877,244,0 1/1:0,60:60:99:1909,162,0 1/1:0,61:61:99:1896,165,0 1/1:0,71:71:99:2217,196,0 1/1:0,59:59:99:1782,156,0 1/1:0,100:102:99:3058,262,0 1/1:0,57:57:99:1771,159,0 1/1:0,61:61:99:1929,174,0 1/1:0,73:74:99:2393,214,0 1/1:0,48:48:99:1515,135,0 1/1:0,69:69:99:2151,187,0 11 65161129 . C T 12321.91 . AC=47;AF=0.560;AN=84;BaseQRankSum=10.237;DP=739;Dels=0.00;FS=2.586;HRun=0;HaplotypeScore=0.7917;InbreedingCoeff=-0.1111;MQ=58.22;MQ0=0;MQRankSum=-0.765;QD=19.78;ReadPosRankSum=5.531 GT:AD:DP:GQ:PL 1/1:0,15:15:42.13:499,42,0 1/1:0,14:14:42.13:502,42,0 0/1:7,4:11:99:103,0,183 0/1:20,23:43:99:628,0,533 1/1:0,39:39:99:1353,114,0 1/1:0,13:13:39.12:493,39,0 1/1:0,21:21:60.18:740,60,0 0/1:6,10:16:99:260,0,153 0/1:2,6:8:52.36:136,0,52 0/1:15,11:26:99:324,0,382 0/1:11,3:14:30.38:30,0,330 0/1:7,5:12:99:148,0,175 0/0:13,0:13:33.09:0,33,382 1/1:0,6:6:15.05:177,15,0 0/1:13,19:32:99:532,0,332 0/1:14,6:20:99:150,0,418 1/1:0,12:12:30.09:369,30,0 0/1:6,5:11:99:149,0,132 0/1:12,5:17:99:129,0,341 0/1:19,18:37:99:514,0,416 0/0:14,0:14:36.10:0,36,402 0/1:15,11:26:99:316,0,334 0/1:12,12:25:99:348,0,335 0/1:7,8:15:99:213,0,161 0/0:33,0:33:87.24:0,87,1017 1/1:0,25:25:72.21:865,72,0 1/1:0,14:14:39.11:467,39,0 0/1:9,6:15:99:109,0,261 1/1:0,13:13:39.10:447,39,0 1/1:0,10:10:30.09:357,30,0 0/1:6,1:7:15.08:15,0,171 0/1:6,15:21:93.73:429,0,94 0/1:10,13:23:99:311,0,216 0/1:4,4:8:99:120,0,103 0/1:6,7:13:99:220,0,109 1/1:0,11:11:30.09:350,30,0 0/0:22,0:22:57.14:0,57,615 0/0:9,0:9:24.06:0,24,274 0/1:7,10:17:99:268,0,177 0/0:13,0:13:39.11:0,39,438 0/1:5,8:13:99:252,0,114 0/0:12,0:12:27.08:0,27,318 11 65304521 . G A 1814.32 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.362;DP=2391;Dels=0.00;FS=5.882;HRun=0;HaplotypeScore=1.3856;InbreedingCoeff=-0.0120;MQ=59.09;MQ0=0;MQRankSum=0.564;QD=13.24;ReadPosRankSum=1.600 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,111,1289 0/0:28,0:28:72.19:0,72,828 0/0:29,0:29:75.20:0,75,878 0/0:157,0:157:99:0,367,4668 0/0:111,0:111:99:0,286,3636 0/0:76,0:76:99:0,214,2628 0/0:89,0:89:99:0,232,2846 0/0:66,0:66:99:0,166,2113 0/0:32,0:32:87.23:0,87,1001 0/0:30,0:30:75.18:0,75,884 0/0:33,0:33:78.20:0,78,933 0/0:35,0:35:90.25:0,90,1061 0/0:34,0:34:81.23:0,81,985 0/0:33,0:33:90.23:0,90,1030 0/0:154,0:154:99:0,391,4581 0/0:39,0:39:99:0,105,1205 0/0:29,0:29:75.18:0,75,837 0/0:33,0:33:87.23:0,87,1005 0/0:79,0:79:99:0,205,2329 0/0:111,0:111:99:0,271,3233 0/0:71,0:71:99:0,196,2223 0/0:48,0:48:99:0,123,1433 0/1:62,75:137:99:1861,0,1711 0/0:72,0:72:99:0,184,2321 0/0:79,0:79:99:0,190,2421 0/0:100,0:101:99:0,247,3153 0/0:29,0:29:78.19:0,78,892 0/0:35,0:35:87.23:0,87,1004 0/0:28,0:28:81.22:0,81,906 0/0:39,0:39:99:0,102,1174 0/0:36,0:36:99:0,105,1146 0/0:76,1:78:99:0,179,2339 0/0:49,0:49:99:0,117,1354 0/0:31,0:31:84.23:0,84,964 0/0:35,0:35:96.26:0,96,1104 0/0:29,0:29:78.21:0,78,897 0/0:82,0:82:99:0,205,2426 0/0:27,0:27:72.20:0,72,845 0/0:39,0:39:99:0,111,1231 0/0:32,0:32:90.23:0,90,995 0/0:38,0:38:87.22:0,87,1036 0/0:35,0:35:99:0,99,1124 11 65351863 . A G 896.34 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.612;DP=1762;Dels=0.00;FS=0.738;HRun=1;HaplotypeScore=1.3926;InbreedingCoeff=-0.0244;MQ=59.02;MQ0=0;MQRankSum=-0.210;QD=11.35;ReadPosRankSum=0.548 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,99,1158 0/0:27,0:27:78.23:0,78,927 0/0:26,0:26:75.20:0,75,881 0/0:72,0:72:99:0,205,2387 0/0:76,0:76:99:0,214,2520 0/0:45,0:46:99:0,132,1582 0/0:43,0:43:99:0,120,1411 0/0:58,0:58:99:0,168,1946 0/0:42,0:42:99:0,117,1388 0/0:29,0:29:81.24:0,81,962 0/0:43,0:43:99:0,129,1507 0/0:37,0:37:99:0,108,1264 0/0:20,0:20:60.18:0,60,708 0/0:34,0:34:99:0,99,1124 0/0:114,0:115:99:0,319,3716 0/0:38,0:38:99:0,102,1164 0/0:29,0:29:84.23:0,84,967 0/0:30,0:30:90.27:0,90,1060 0/0:48,0:49:99:0,144,1707 0/0:59,1:60:99:0,150,1968 0/0:46,0:46:99:0,132,1542 0/0:39,0:39:99:0,117,1332 0/0:79,0:79:99:0,229,2711 0/0:34,0:34:99:0,99,1162 0/0:44,0:44:99:0,126,1480 0/0:33,0:33:96.28:0,96,1127 0/0:28,0:28:78.23:0,78,929 0/0:33,0:33:99:0,99,1163 0/0:28,0:28:78.24:0,78,930 0/0:33,0:33:96.28:0,96,1130 0/0:29,0:29:81.23:0,81,953 0/0:62,0:62:99:0,172,2059 0/0:46,0:46:99:0,126,1487 0/0:38,0:38:99:0,108,1280 0/0:39,0:39:99:0,108,1290 0/0:37,0:37:99:0,102,1214 0/1:23,20:44:99:539,0,686 0/1:21,14:35:99:420,0,560 0/0:38,0:38:99:0,111,1277 0/0:42,0:42:99:0,123,1450 0/0:23,0:23:63.18:0,63,731 0/0:23,0:23:69.21:0,69,829 11 65384727 . C T 4200.68 . AC=20;AF=0.238;AN=84;BaseQRankSum=1.746;DP=540;Dels=0.00;FS=5.615;HRun=0;HaplotypeScore=0.2546;InbreedingCoeff=0.3031;MQ=58.49;MQ0=0;MQRankSum=1.782;QD=18.84;ReadPosRankSum=-0.529 GT:AD:DP:GQ:PL 0/0:5,0:5:9:0,9,104 0/1:3,4:7:83.70:129,0,84 1/1:0,15:15:39.12:494,39,0 0/0:11,1:12:2.25:2,0,378 0/0:9,0:9:27.09:0,27,352 0/1:9,4:13:99:121,0,291 0/0:6,0:6:18.06:0,18,245 1/1:0,16:16:45.14:582,45,0 1/1:0,12:12:33.10:414,33,0 1/1:0,8:8:24.05:286,24,0 0/1:7,9:16:99:254,0,187 0/0:10,0:10:30.09:0,30,367 0/0:6,0:6:15.05:0,15,186 0/0:8,0:8:21.06:0,21,248 0/1:22,30:52:99:896,0,444 0/1:6,4:10:99:122,0,154 0/0:14,0:14:39.11:0,39,461 0/1:9,5:14:99:148,0,226 0/0:26,0:26:72.21:0,72,848 0/0:14,0:14:39.12:0,39,491 0/0:17,0:17:48.14:0,48,586 0/0:18,0:18:51.15:0,51,611 0/1:13,8:21:99:244,0,382 0/0:10,0:10:27.08:0,27,351 0/0:15,0:15:42.13:0,42,531 0/0:8,0:8:18.06:0,18,248 0/0:6,0:6:18.05:0,18,217 0/0:12,0:12:36.10:0,36,424 0/0:15,0:16:42.10:0,42,484 0/1:3,4:7:91.75:102,0,92 1/1:0,5:5:12.04:150,12,0 0/0:19,0:19:54.16:0,54,666 0/0:13,0:13:36.11:0,36,441 0/0:6,0:6:18.04:0,18,190 0/0:11,0:11:27.08:0,27,342 0/0:22,0:22:48.15:0,48,605 0/1:11,5:16:99:133,0,275 0/0:8,0:8:21.07:0,21,265 0/1:7,4:11:99:122,0,179 0/0:9,0:9:27.08:0,27,328 0/0:9,0:9:24.07:0,24,290 0/0:8,0:8:24.07:0,24,272 11 65387028 . C G 45.12 . AC=7;AF=0.083;AN=84;BaseQRankSum=-8.075;DP=601;Dels=0.00;FS=339.537;HRun=3;HaplotypeScore=0.3734;InbreedingCoeff=-0.1389;MQ=58.46;MQ0=0;MQRankSum=1.432;QD=0.49;ReadPosRankSum=-7.876 GT:AD:DP:GQ:PL 0/0:16,0:16:42.09:0,42,436 0/0:12,2:14:7.38:0,7,289 0/0:11,1:12:11.39:0,11,330 0/0:23,3:26:68.57:0,69,771 0/0:24,6:30:23.31:0,23,711 0/0:10,3:13:27.09:0,27,337 0/0:16,2:18:2.46:1,0,512 0/1:8,7:15:33.89:34,0,218 0/0:5,1:6:12.03:0,12,128 0/0:10,0:10:30.05:0,30,310 0/0:9,4:13:24.06:0,24,261 0/1:9,2:11:4.48:4,0,231 0/0:4,0:4:12:0,12,110 0/0:12,1:13:10.40:0,10,337 0/0:31,3:34:87.16:0,87,888 0/1:12,3:15:18.22:18,0,303 0/0:10,0:10:30.07:0,30,315 0/1:4,2:6:21.40:21,0,84 0/1:13,4:17:40.69:41,0,334 0/0:22,1:23:26.71:0,27,590 0/1:15,4:19:14.21:14,0,388 0/0:9,3:12:2.29:2,0,227 0/0:30,2:32:78.20:0,78,900 0/0:18,4:22:48.12:0,48,553 0/0:17,4:21:48.11:0,48,556 0/0:9,4:13:1.37:4,0,254 0/1:5,3:9:11.43:11,0,90 0/0:7,0:7:21.04:0,21,216 0/0:9,1:10:27.07:0,27,294 0/0:10,2:12:30.07:0,30,316 0/0:7,2:9:1.57:4,0,196 0/0:18,0:18:48.08:0,48,508 0/0:6,0:6:18.05:0,18,196 0/0:8,0:8:21.03:0,21,209 0/0:13,0:13:36.09:0,36,389 0/0:7,0:7:18.05:0,18,209 0/0:16,1:17:42.09:0,42,445 0/0:6,1:7:18.04:0,18,189 0/0:8,1:9:24.06:0,24,256 0/0:11,2:13:30.07:0,30,316 0/0:10,2:12:2.76:1,0,262 0/0:18,1:19:20.53:0,21,478 11 65387101 . CT C 26.13 . AC=8;AF=0.095;AN=84;BaseQRankSum=0.134;DP=370;FS=82.977;HRun=1;HaplotypeScore=26.1821;InbreedingCoeff=-0.0484;MQ=56.62;MQ0=0;MQRankSum=-0.621;QD=0.37;ReadPosRankSum=-7.477 GT:AD:DP:GQ:PL 0/1:6,0:6:23.20:23,0,98 0/0:8,0:8:1.23:5,0,183 0/0:6,0:6:12.03:0,12,156 0/1:14,0:14:14.05:14,0,276 0/0:20,0:20:16.11:0,16,421 0/0:13,0:11:32.11:0,32,398 0/0:4,0:4:6.02:0,6,92 0/1:10,5:15:21.72:22,0,327 0/0:8,0:8:21.07:0,21,302 0/0:3,0:3:9.03:0,9,138 0/0:12,0:12:18.10:0,18,416 0/0:8,0:8:21.02:0,21,270 0/0:4,0:4:9.03:0,9,138 0/0:3,0:3:0.96:6,0,23 0/0:25,0:25:27.86:0,28,523 0/0:8,0:8:14.27:0,14,161 0/0:5,0:5:11.97:0,12,155 0/0:8,0:8:3.86:0,4,180 0/0:8,0:8:12.04:0,12,184 0/0:10,0:10:24.08:0,24,351 0/0:10,0:10:21.06:0,21,305 0/0:12,0:12:18.02:0,18,216 0/0:16,0:16:13.20:0,13,463 0/0:10,0:10:13.66:0,14,188 0/1:9,0:9:10.85:11,0,124 0/0:8,0:8:18.05:0,18,256 0/0:12,0:12:11.02:0,11,280 0/0:6,0:6:15.04:0,15,200 0/0:3,0:3:2.03:0,2,86 0/0:4,0:4:12.04:0,12,168 0/1:1,0:1:1.76:25,3,0 0/0:14,0:14:26.05:0,26,334 0/0:12,0:12:26.90:0,27,370 0/1:5,0:5:30.64:31,0,73 0/0:7,0:7:9.89:0,10,210 0/0:3,0:3:6.02:0,6,92 0/1:13,0:13:11.81:12,0,339 0/0:5,0:5:8.51:0,9,101 0/0:9,0:9:11.94:0,12,239 0/1:8,0:8:6.23:6,0,190 0/0:7,0:7:18.03:0,18,237 0/0:8,0:8:0.49:0,0,170 11 65387102 . T C 41.73 . AC=6;AF=0.071;AN=84;BaseQRankSum=-6.225;DP=370;Dels=0.01;FS=40.972;HRun=4;HaplotypeScore=0.4946;InbreedingCoeff=0.0020;MQ=56.62;MQ0=0;MQRankSum=-0.260;QD=0.77;ReadPosRankSum=-4.116 GT:AD:DP:GQ:PL 0/1:2,4:6:24.42:24,0,55 0/0:5,3:8:0.85:7,0,115 0/0:6,0:6:3.01:0,3,31 0/0:9,5:14:13.19:0,13,158 0/0:14,6:20:29.68:0,30,330 0/0:10,3:13:21.04:0,21,233 0/0:2,2:4:6.02:0,6,74 0/0:8,2:10:21.06:0,21,252 0/0:7,1:8:18.06:0,18,221 0/0:3,0:3:9.03:0,9,106 0/0:10,2:12:24.07:0,24,284 0/0:5,3:8:15.05:0,15,184 0/0:3,1:4:9.02:0,9,106 0/0:1,2:3:3.01:0,3,34 0/1:15,9:25:7.40:7,0,310 0/0:6,2:8:9.03:0,9,102 0/0:5,0:5:12:0,12,115 0/0:6,2:8:10.86:0,11,109 0/0:5,3:8:12.04:0,12,145 0/0:8,2:10:18.05:0,18,218 0/0:7,3:10:21.05:0,21,226 0/0:9,3:12:18.03:0,18,187 0/0:11,5:16:2.41:0,2,280 0/0:8,2:10:9.03:0,9,107 0/1:7,2:9:15.66:16,0,76 0/0:7,1:8:18.04:0,18,189 0/0:8,4:12:18.05:0,18,206 0/0:5,1:6:15.04:0,15,170 0/0:2,1:3:6.02:0,6,68 0/0:4,0:4:12.03:0,12,139 0/1:0,1:1:1.76:30,3,0 0/0:10,4:14:21.03:0,21,222 0/0:9,3:12:20.50:0,20,220 0/1:3,2:5:35.74:46,0,36 0/0:5,2:7:9.50:0,10,118 0/0:2,1:3:6.02:0,6,74 0/0:8,5:13:3.74:0,4,232 0/0:2,3:5:6.02:0,6,66 0/0:7,2:9:18.01:0,18,182 0/1:6,2:8:16.51:17,0,118 0/0:7,0:7:18.04:0,18,193 0/0:6,2:8:13.58:0,14,134 11 65394881 . G A 1501.85 . AC=3;AF=0.036;AN=84;BaseQRankSum=7.506;DP=1486;Dels=0.00;FS=1.890;HRun=0;HaplotypeScore=1.0675;InbreedingCoeff=-0.0371;MQ=58.86;MQ0=0;MQRankSum=0.371;QD=13.78;ReadPosRankSum=0.102 GT:AD:DP:GQ:PL 0/0:20,1:21:26.18:0,26,613 0/0:23,0:23:57.15:0,57,644 0/0:18,0:18:54.13:0,54,583 0/0:74,0:75:99:0,211,2457 0/0:80,0:80:99:0,229,2585 0/0:28,0:28:78.22:0,78,899 0/0:50,0:50:99:0,138,1585 0/0:41,0:41:99:0,111,1277 0/0:31,0:32:90.23:0,90,987 0/0:18,0:18:48.13:0,48,535 0/0:25,0:25:72.14:0,72,744 0/0:27,0:28:69.15:0,69,763 0/1:17,6:23:99:151,0,451 0/0:29,0:29:81.19:0,81,873 0/0:66,0:70:99:0,180,1928 0/0:28,0:28:81.19:0,81,896 0/0:29,0:29:78.19:0,78,851 0/1:8,9:17:99:279,0,184 0/1:26,43:69:99:1147,0,607 0/0:60,0:60:99:0,174,1880 0/0:42,0:42:99:0,114,1238 0/0:39,0:40:99:0,114,1211 0/0:67,0:67:99:0,193,2233 0/0:39,0:39:99:0,111,1307 0/0:38,0:38:99:0,102,1171 0/0:34,0:34:90.22:0,90,1018 0/0:16,0:16:45.12:0,45,499 0/0:25,0:25:75.14:0,75,796 0/0:20,0:20:54.11:0,54,564 0/0:27,0:27:78.19:0,78,852 0/0:34,0:34:96.23:0,96,1026 0/0:56,0:56:99:0,153,1666 0/0:48,0:48:99:0,132,1401 0/0:22,0:22:63.16:0,63,688 0/0:23,0:23:63.12:0,63,661 0/0:20,0:20:57.14:0,57,609 0/0:47,0:47:99:0,135,1417 0/0:18,0:18:51.13:0,51,563 0/0:24,0:24:69.17:0,69,744 0/0:25,0:25:72.16:0,72,767 0/0:26,0:26:69.16:0,69,732 0/0:31,0:31:90.22:0,90,955 11 65402528 . C T 301.41 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.352;DP=1247;Dels=0.00;FS=2.636;HRun=0;HaplotypeScore=0.8980;InbreedingCoeff=-0.0121;MQ=59.21;MQ0=0;MQRankSum=-0.686;QD=13.70;ReadPosRankSum=0.529 GT:AD:DP:GQ:PL 0/0:22,0:23:66.17:0,66,727 0/0:21,0:21:51.13:0,51,579 0/0:23,0:23:66.16:0,66,757 0/0:57,0:57:99:0,159,1947 0/0:41,0:41:99:0,117,1455 0/0:26,0:26:78.22:0,78,973 0/0:26,0:26:75.23:0,75,933 0/0:36,0:36:96.30:0,96,1223 0/0:23,0:23:63.17:0,63,728 0/0:22,0:22:60.16:0,60,673 0/0:17,0:17:51.13:0,51,568 0/0:18,0:18:51.14:0,51,592 0/0:12,0:12:33.08:0,33,368 0/0:22,0:22:63.16:0,63,701 0/0:84,0:85:99:0,217,2513 0/0:26,0:26:75.19:0,75,837 0/0:26,0:26:66.18:0,66,765 0/0:18,0:18:51.13:0,51,574 0/0:50,0:50:99:0,129,1529 0/0:49,0:49:99:0,138,1600 0/0:45,0:45:99:0,117,1370 0/0:23,0:23:63.18:0,63,737 0/0:60,0:60:99:0,165,2051 0/0:45,0:45:99:0,123,1515 0/0:32,0:32:81.23:0,81,999 0/0:28,0:28:75.22:0,75,958 0/0:17,0:17:51.13:0,51,575 0/0:20,0:20:60.13:0,60,641 0/0:21,0:21:60.13:0,60,660 0/0:22,0:22:66.18:0,66,748 0/0:16,0:16:42.10:0,42,468 0/0:43,0:43:99:0,120,1416 0/0:30,0:30:84.24:0,84,1000 0/0:25,0:25:72.19:0,72,806 0/0:17,0:17:48.13:0,48,531 0/0:30,0:30:87.22:0,87,997 0/0:37,0:37:99:0,102,1155 0/0:19,0:19:51.14:0,51,593 0/0:25,0:25:72.20:0,72,832 0/0:28,0:28:72.18:0,72,826 0/0:21,0:21:60.16:0,60,682 0/1:10,12:22:99:348,0,275 11 65403651 . C A 768.34 . AC=5;AF=0.060;AN=84;BaseQRankSum=-1.502;DP=549;Dels=0.00;FS=0.679;HRun=2;HaplotypeScore=0.4454;InbreedingCoeff=-0.0674;MQ=58.88;MQ0=0;MQRankSum=-0.720;QD=12.81;ReadPosRankSum=2.012 GT:AD:DP:GQ:PL 0/0:8,0:8:21.04:0,21,249 0/0:14,0:14:30.09:0,30,392 0/1:3,7:10:87.82:201,0,88 0/0:28,0:28:60.19:0,60,816 0/0:25,0:25:63.21:0,63,868 0/0:13,0:13:33.10:0,33,427 0/1:6,5:11:99:130,0,141 0/0:10,0:10:24.08:0,24,330 0/0:9,0:9:27.08:0,27,329 0/0:11,0:11:30.10:0,30,376 0/0:5,0:5:15.05:0,15,188 0/0:4,0:4:12.04:0,12,147 0/0:7,0:7:18.06:0,18,235 0/0:8,0:8:21.07:0,21,268 0/0:36,0:36:90.27:0,90,1134 0/0:10,0:10:30.09:0,30,369 0/0:15,0:15:36.12:0,36,476 0/0:10,0:10:27.09:0,27,342 0/0:20,0:20:51.15:0,51,633 0/0:27,0:27:60.19:0,60,781 0/0:19,0:19:51.14:0,51,624 0/0:19,0:19:54.16:0,54,662 0/1:6,12:18:99:308,0,199 0/0:9,0:9:24.04:0,24,286 0/0:19,0:19:42.14:0,42,562 0/0:11,0:11:33.10:0,33,426 0/0:4,0:4:9.03:0,9,122 0/0:8,0:8:24.08:0,24,300 0/0:7,0:7:21.07:0,21,259 0/1:8,3:11:80.74:81,0,231 0/1:5,5:10:99:146,0,155 0/0:21,0:21:51.17:0,51,675 0/0:12,0:12:30.09:0,30,379 0/0:7,0:7:21.04:0,21,252 0/0:6,0:6:18.05:0,18,214 0/0:10,0:10:21.07:0,21,281 0/0:15,0:15:39.12:0,39,501 0/0:12,0:12:30.09:0,30,376 0/0:18,0:18:48.15:0,48,599 0/0:10,0:10:30.10:0,30,378 0/0:8,0:8:21.07:0,21,271 0/0:14,0:14:39.12:0,39,484 11 65412467 . G A 56871.90 . AC=41;AF=0.488;AN=84;BaseQRankSum=13.979;DP=3840;Dels=0.00;FS=1.204;HRun=0;HaplotypeScore=2.9525;InbreedingCoeff=-0.0959;MQ=59.25;MQ0=0;MQRankSum=-0.961;QD=20.49;ReadPosRankSum=-0.436 GT:AD:DP:GQ:PL 0/1:33,33:66:99:892,0,857 0/0:54,0:55:99:0,147,1662 0/0:57,0:57:99:0,156,1745 0/0:212,1:213:99:0,533,6793 0/0:174,2:176:99:0,390,5665 0/1:73,44:117:99:1299,0,2119 0/1:58,51:109:99:1501,0,1440 0/1:51,46:97:99:1261,0,1389 0/1:31,41:72:99:1169,0,756 0/1:34,45:79:99:1302,0,823 1/1:0,46:46:99:1584,129,0 0/1:31,27:58:99:835,0,682 1/1:0,59:59:99:2063,169,0 0/1:24,30:54:99:890,0,567 0/1:109,110:220:99:2880,0,2714 0/1:32,30:62:99:849,0,810 0/1:36,40:76:99:1125,0,958 0/1:26,27:53:99:801,0,657 1/1:0,141:141:99:4767,385,0 0/1:70,79:150:99:2036,0,1695 1/1:0,133:133:99:4539,373,0 1/1:0,105:106:99:3480,283,0 0/0:217,0:217:99:0,590,7362 0/1:48,46:94:99:1383,0,1218 0/0:132,0:132:99:0,358,4454 1/1:0,97:97:99:3330,268,0 0/0:57,0:57:99:0,153,1750 0/0:60,0:60:99:0,171,1906 0/1:20,39:59:99:1214,0,308 0/0:57,0:57:99:0,159,1825 0/1:29,32:61:99:904,0,700 0/1:57,79:136:99:2177,0,1370 0/1:31,50:81:99:1526,0,826 0/1:20,25:45:99:733,0,499 0/1:23,33:56:99:945,0,594 1/1:0,57:57:99:1964,159,0 1/1:0,126:126:99:4137,340,0 0/1:37,38:75:99:1103,0,858 1/1:0,57:57:99:1994,162,0 0/1:25,42:67:99:1247,0,556 0/0:39,1:41:82.96:0,83,1254 0/1:33,33:66:99:942,0,786 11 65417434 . G A 21245.61 . AC=28;AF=0.333;AN=84;BaseQRankSum=7.111;DP=2755;Dels=0.00;FS=14.225;HRun=0;HaplotypeScore=2.1291;InbreedingCoeff=-0.1786;MQ=59.22;MQ0=0;MQRankSum=-2.673;QD=14.16;ReadPosRankSum=-1.550 GT:AD:DP:GQ:PL 0/1:21,20:41:99:581,0,480 0/0:32,0:32:90.25:0,90,1052 0/0:23,0:23:66.17:0,66,753 0/0:190,0:190:99:0,496,6142 0/0:146,0:146:99:0,382,4818 0/1:58,28:86:99:705,0,1660 0/1:55,39:94:99:1103,0,1412 0/0:117,0:117:99:0,304,3771 0/0:51,0:51:99:0,138,1594 0/0:41,0:41:99:0,105,1153 0/1:24,26:50:99:734,0,567 0/1:26,24:50:99:667,0,632 1/1:0,26:26:75.23:917,75,0 0/0:55,0:55:99:0,144,1642 0/1:76,48:125:99:1337,0,1927 0/1:24,29:53:99:751,0,664 0/1:30,20:50:99:549,0,858 0/1:27,23:50:99:643,0,674 1/1:0,60:60:99:1943,159,0 0/1:42,39:81:99:1115,0,1065 0/1:55,32:87:99:821,0,1371 0/1:33,22:55:99:618,0,909 0/0:193,0:193:99:0,497,6212 0/1:50,36:86:99:949,0,1421 0/0:110,0:110:99:0,271,3466 1/1:1,67:68:99:2199,141,0 0/0:35,0:35:99:0,99,1141 0/0:42,0:42:99:0,120,1364 0/1:13,18:31:99:519,0,307 0/0:47,0:47:99:0,126,1457 0/0:53,0:53:99:0,141,1657 0/1:37,24:61:99:642,0,983 0/1:39,28:67:99:739,0,1050 0/0:41,0:41:99:0,117,1326 0/1:17,17:34:99:497,0,404 0/0:44,0:44:99:0,117,1343 0/1:40,40:81:99:1063,0,1000 0/1:18,17:35:99:462,0,537 0/1:24,16:40:99:464,0,673 0/1:26,21:47:99:617,0,654 0/0:34,1:35:59.26:0,59,998 0/1:20,21:42:99:611,0,576 11 65480925 . A C 757.61 . AC=16;AF=0.190;AN=84;BaseQRankSum=-6.387;DP=1728;Dels=0.00;FS=1396.447;HRun=2;HaplotypeScore=0.9583;InbreedingCoeff=-0.2506;MQ=59.01;MQ0=0;MQRankSum=0.505;QD=1.14;ReadPosRankSum=-17.439 GT:AD:DP:GQ:PL 0/0:29,2:31:57.64:0,58,992 0/0:25,2:27:40.87:0,41,810 0/1:15,5:20:23.15:23,0,413 0/0:83,21:105:44.78:0,45,2657 0/1:73,18:91:77.57:78,0,2289 0/0:53,9:62:99:0,125,1845 0/1:40,8:48:13.55:14,0,1250 0/1:43,20:63:99:210,0,1331 0/0:31,4:35:59.83:0,60,1026 0/0:19,4:23:28.02:0,28,626 0/1:24,7:31:79.81:80,0,730 0/0:16,3:19:12.97:0,13,439 0/1:15,3:18:19.60:20,0,461 0/0:22,3:25:33.70:0,34,720 0/0:88,8:96:99:0,216,2814 0/1:20,9:29:64.10:64,0,579 0/0:31,4:35:27.76:0,28,979 0/0:24,6:30:10.28:0,10,753 0/0:42,5:47:88.06:0,88,1381 0/1:45,18:63:99:240,0,1346 0/0:32,5:37:53.27:0,53,1031 0/0:24,5:29:67.07:0,67,777 0/1:81,22:103:22.23:22,0,2580 0/0:43,9:52:40.05:0,40,1369 0/0:64,13:77:54.19:0,54,2069 0/0:40,13:53:28.01:0,28,1320 0/1:23,7:30:58.35:58,0,689 0/0:22,5:27:2.85:0,3,709 0/0:21,5:26:36.51:0,37,691 0/0:21,2:23:35.60:0,36,708 0/0:29,6:35:32.06:0,32,959 0/0:37,9:46:69.74:0,70,1213 0/1:26,12:38:20.96:21,0,733 0/0:21,7:28:6.98:0,7,677 0/1:22,5:27:30.94:31,0,721 0/0:23,4:27:65.08:0,65,787 0/0:33,8:41:30.97:0,31,1069 0/1:18,5:23:10.60:11,0,541 0/1:17,4:21:12.41:12,0,540 0/1:30,8:38:8.97:9,0,951 0/1:14,6:20:20.82:21,0,391 0/0:22,7:29:2.91:0,0,686 11 65480925 . A AC 980.15 . AC=18;AF=0.214;AN=84;BaseQRankSum=19.539;DP=1826;FS=1775.042;HRun=2;HaplotypeScore=164.4411;InbreedingCoeff=-0.2816;MQ=57.91;MQ0=0;MQRankSum=-3.936;QD=1.13;ReadPosRankSum=-21.301 GT:AD:DP:GQ:PL 0/0:32,0:32:86.39:0,86,1050 0/0:29,0:29:39.36:0,39,768 0/1:21,0:21:35.76:36,0,470 0/1:116,0:116:77.99:78,0,2704 0/1:97,0:97:99:123,0,2412 0/0:65,0:64:99:0,100,1784 0/1:50,0:50:76.76:77,0,1267 0/1:68,0:67:99:177,0,1322 0/0:39,0:39:34.70:0,35,960 0/0:25,0:25:9.71:0,10,651 0/1:34,0:34:89.49:89,0,697 0/0:17,0:17:8.32:0,8,416 0/1:20,0:20:58.26:58,0,399 0/0:24,0:24:6.55:0,7,672 0/0:100,9:109:52.59:0,53,2804 0/1:32,0:32:42.09:42,0,539 0/0:39,0:39:27.06:0,27,948 0/0:31,0:31:34.54:0,35,813 0/0:50,0:50:56.73:0,57,1316 0/1:67,0:67:99:174,0,1361 0/0:40,0:40:51.04:0,51,997 0/0:29,0:29:33.35:0,33,713 0/1:108,0:108:65.49:65,0,2625 0/0:49,0:48:42.24:0,42,1312 0/0:81,0:80:16.62:0,17,2133 0/0:53,0:53:21.33:0,21,1228 0/1:30,0:30:60.32:60,0,691 0/0:26,0:26:10.37:0,10,715 0/0:29,0:29:21.38:0,21,716 0/0:26,0:26:14:0,14,687 0/0:36,0:36:43.18:0,43,1017 0/0:48,0:47:17.95:0,18,1194 0/1:38,0:38:37.44:37,0,703 0/0:29,0:29:10.79:0,11,718 0/1:28,0:28:45.64:46,0,655 0/0:29,0:29:25.52:0,26,697 0/1:41,0:41:8.47:8,0,907 0/0:25,0:25:7.06:0,7,604 0/1:23,0:23:6.45:6,0,539 0/1:39,0:39:15.76:16,0,938 0/1:22,0:22:14.65:15,0,396 0/1:32,0:32:43.65:44,0,692 11 65561574 . C T 602.77 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.910;DP=3041;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.4121;InbreedingCoeff=-0.0120;MQ=59.16;MQ0=0;MQRankSum=0.972;QD=11.37;ReadPosRankSum=-1.430 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,135,1644 0/0:38,0:38:99:0,105,1241 0/0:35,0:35:90.25:0,90,1088 0/0:166,0:166:99:0,466,5908 0/0:154,0:155:99:0,430,5566 0/0:133,0:133:99:0,367,4660 0/0:98,0:98:99:0,274,3486 0/0:120,0:120:99:0,337,4346 0/0:58,0:58:99:0,162,1952 0/0:37,0:37:99:0,105,1222 0/0:44,0:44:99:0,120,1472 0/0:47,0:47:99:0,126,1541 0/0:35,0:35:99:0,99,1206 0/0:52,0:52:99:0,147,1776 0/0:144,0:144:99:0,373,4546 0/0:52,0:52:99:0,150,1838 0/0:51,0:51:99:0,144,1795 0/0:31,0:31:87.26:0,87,1061 0/0:83,0:86:99:0,235,2839 0/0:92,0:92:99:0,253,3137 0/0:89,0:90:99:0,232,2755 0/1:30,23:53:99:649,0,866 0/0:201,0:201:99:0,578,7400 0/0:111,0:111:99:0,301,3892 0/0:119,0:120:99:0,343,4455 0/0:101,0:101:99:0,283,3684 0/0:32,0:32:90.22:0,90,1057 0/0:46,0:47:99:0,126,1513 0/0:41,0:41:99:0,120,1444 0/0:45,0:45:99:0,129,1530 0/0:45,0:45:99:0,129,1542 0/0:93,0:93:99:0,244,2988 0/0:60,0:60:99:0,169,2043 0/0:47,0:47:99:0,123,1543 0/0:48,0:48:99:0,120,1491 0/0:50,0:50:99:0,147,1720 0/0:97,0:97:99:0,274,3301 0/0:51,0:51:99:0,135,1596 0/0:56,0:56:99:0,156,1902 0/0:37,0:37:99:0,108,1311 0/0:39,0:39:99:0,105,1244 0/0:53,0:53:99:0,141,1693 11 65631361 . C T 2130.71 . AC=2;AF=0.024;AN=84;BaseQRankSum=9.124;DP=2434;Dels=0.00;FS=1.274;HRun=0;HaplotypeScore=1.3291;InbreedingCoeff=-0.0244;MQ=57.02;MQ0=1;MQRankSum=1.463;QD=15.44;ReadPosRankSum=-0.841 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,123,1351 0/0:34,0:34:87.23:0,87,982 0/0:50,0:50:99:0,141,1525 0/0:117,0:117:99:0,316,3685 0/0:73,0:73:99:0,196,2331 0/0:93,0:93:99:0,253,3003 0/0:75,0:75:99:0,202,2367 0/0:76,0:76:99:0,211,2445 0/0:44,0:44:99:0,129,1343 0/0:47,0:49:99:0,120,1325 0/0:38,0:38:99:0,108,1171 0/0:46,0:46:99:0,129,1407 0/0:36,0:36:99:0,102,1097 0/0:44,0:44:99:0,114,1237 0/0:139,2:141:99:0,346,4075 0/0:54,0:54:99:0,153,1685 0/0:43,0:43:99:0,120,1292 0/0:45,0:45:99:0,126,1350 0/0:65,1:67:99:0,177,1872 0/0:84,0:84:99:0,238,2593 0/0:59,1:60:99:0,118,1625 0/0:55,0:55:99:0,150,1707 0/0:108,0:109:99:0,304,3508 0/1:30,40:70:99:1104,0,664 0/0:87,0:88:99:0,226,2706 0/1:30,38:68:99:1089,0,712 0/0:36,0:36:99:0,102,1080 0/0:30,0:32:87.22:0,87,935 0/0:40,0:40:99:0,114,1215 0/0:34,0:34:96.26:0,96,1069 0/0:45,0:45:99:0,126,1382 0/0:97,0:98:99:0,247,2804 0/0:53,0:54:99:0,153,1661 0/0:41,0:41:99:0,117,1299 0/0:41,0:41:99:0,111,1211 0/0:51,0:51:99:0,138,1531 0/0:65,0:66:99:0,177,1860 0/0:39,0:39:99:0,105,1145 0/0:43,0:44:99:0,120,1304 0/0:34,0:34:96.22:0,96,1015 0/0:30,0:30:84.20:0,84,897 0/0:42,0:42:99:0,108,1226 11 65632507 . G A 5690.85 . AC=2;AF=0.024;AN=84;BaseQRankSum=13.486;DP=6254;DS;Dels=0.00;FS=3.590;HRun=0;HaplotypeScore=4.1318;InbreedingCoeff=-0.0244;MQ=59.40;MQ0=0;MQRankSum=-0.607;QD=15.10;ReadPosRankSum=2.569 GT:AD:DP:GQ:PL 0/0:141,0:141:99:0,406,4339 0/0:109,0:109:99:0,307,3300 0/0:90,0:90:99:0,259,2818 0/0:240,1:241:99:0,616,7659 0/0:205,0:205:99:0,557,6708 0/0:203,0:203:99:0,548,6573 0/0:148,0:148:99:0,427,5003 0/0:175,0:177:99:0,490,5739 0/0:103,0:103:99:0,292,3214 0/0:112,0:112:99:0,322,3470 0/0:95,0:95:99:0,274,2957 0/0:118,0:118:99:0,331,3614 0/0:84,0:84:99:0,226,2476 0/0:117,0:118:99:0,337,3656 0/0:250,0:250:99:0,686,7441 0/0:128,0:129:99:0,358,3952 0/0:131,0:131:99:0,376,4059 0/1:68,58:127:99:1669,0,1771 0/1:106,142:250:99:4022,0,2464 0/0:250,0:250:99:0,698,7655 0/0:214,0:216:99:0,583,6405 0/0:158,1:160:99:0,397,4622 0/0:237,0:237:99:0,659,7949 0/0:150,0:150:99:0,415,4868 0/0:164,0:164:99:0,463,5486 0/0:147,0:147:99:0,415,4872 0/0:82,0:82:99:0,244,2646 0/0:118,0:118:99:0,334,3609 0/0:104,0:105:99:0,277,3071 0/0:102,0:102:99:0,268,2897 0/0:113,0:113:99:0,322,3466 0/0:250,0:250:99:0,671,7432 0/0:168,0:168:99:0,475,5129 0/0:99,0:99:99:0,280,3030 0/0:112,0:112:99:0,313,3391 0/0:134,0:134:99:0,361,3989 0/0:223,0:225:99:0,595,6486 0/0:113,0:113:99:0,304,3270 0/0:125,0:125:99:0,355,3766 0/0:124,0:125:99:0,349,3802 0/0:116,0:117:99:0,322,3532 0/0:111,0:111:99:0,325,3490 11 65733393 . C T 75325.84 . AC=60;AF=0.714;AN=84;BaseQRankSum=8.454;DP=3735;Dels=0.00;FS=3.252;HRun=0;HaplotypeScore=2.1154;InbreedingCoeff=-0.1667;MQ=59.27;MQ0=0;MQRankSum=-0.061;QD=21.70;ReadPosRankSum=-1.764 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2334,190,0 1/1:0,50:50:99:1614,129,0 0/1:29,27:56:99:744,0,774 1/1:0,156:156:99:4958,391,0 1/1:0,144:144:99:4495,352,0 0/1:63,67:131:99:1898,0,1707 0/1:63,40:103:99:1032,0,1680 0/1:72,45:117:99:1206,0,1903 1/1:0,70:70:99:2258,181,0 1/1:0,68:68:99:2218,181,0 1/1:0,67:67:99:2290,184,0 1/1:0,73:73:99:2429,199,0 1/1:0,51:51:99:1749,141,0 1/1:0,65:65:99:2144,172,0 0/1:91,114:205:99:3158,0,2287 0/1:42,34:76:99:925,0,1106 0/1:42,25:67:99:660,0,1105 0/1:29,27:57:99:722,0,718 0/1:51,47:99:99:1261,0,1204 1/1:0,129:131:99:4090,334,0 0/1:66,54:121:99:1521,0,1607 0/1:45,42:87:99:1105,0,1131 0/1:114,70:185:99:1830,0,3249 0/0:108,0:108:99:0,256,3329 0/0:154,1:155:99:0,338,4722 0/1:71,49:120:99:1170,0,1993 0/1:33,24:57:99:622,0,883 1/1:0,57:57:99:2003,165,0 0/1:21,17:38:99:485,0,563 0/1:28,36:65:99:1028,0,734 0/1:38,29:67:99:869,0,981 1/1:1,103:104:99:3311,237,0 1/1:0,69:69:99:2236,181,0 1/1:0,63:63:99:2205,181,0 1/1:1,65:66:99:2028,141,0 1/1:0,72:72:99:2348,190,0 1/1:0,106:106:99:3232,259,0 1/1:0,65:65:99:2185,178,0 1/1:0,64:64:99:2154,178,0 0/1:38,38:76:99:1105,0,968 0/1:22,26:48:99:713,0,572 0/1:47,38:85:99:993,0,1240 11 65735014 . G A 524.55 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.139;DP=1310;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.1977;InbreedingCoeff=-0.0121;MQ=58.06;MQ0=0;MQRankSum=1.954;QD=11.66;ReadPosRankSum=0.756 GT:AD:DP:GQ:PL 0/0:29,0:29:81.18:0,81,920 0/0:13,0:13:33.09:0,33,386 0/0:13,0:13:36.09:0,36,396 0/0:75,0:75:99:0,205,2544 0/0:79,0:80:99:0,220,2772 0/0:37,1:38:61.04:0,61,1158 0/0:43,0:43:99:0,114,1454 0/0:52,2:54:99:0,105,1635 0/0:32,0:32:93.27:0,93,1093 0/0:22,0:22:60.14:0,60,679 0/0:15,0:15:39.12:0,39,469 0/0:18,0:18:51.14:0,51,588 0/0:16,0:16:45.11:0,45,503 0/0:16,0:16:45.11:0,45,481 0/0:65,0:66:99:0,156,1831 0/0:40,0:40:99:0,99,1158 0/0:25,0:25:63.17:0,63,746 0/0:15,0:15:39.09:0,39,437 0/0:42,0:42:99:0,108,1250 0/0:45,0:45:99:0,114,1335 0/0:22,0:22:51.15:0,51,604 0/0:37,0:37:96.25:0,96,1096 0/0:71,1:73:99:0,152,2348 0/0:28,1:29:41.80:0,42,890 0/0:34,1:35:55.93:0,56,1094 0/0:51,2:53:61.38:0,61,1453 0/0:25,0:25:63.18:0,63,750 0/0:18,0:18:48.14:0,48,569 0/0:17,0:17:42.12:0,42,513 0/0:12,0:12:30.09:0,30,370 0/0:22,0:22:66.15:0,66,740 0/1:23,21:45:99:571,0,587 0/0:29,0:29:81.21:0,81,932 0/0:16,0:16:45.08:0,45,488 0/0:20,0:20:57.15:0,57,637 0/0:16,0:16:39.10:0,39,446 0/0:43,0:44:99:0,108,1249 0/0:22,0:22:54.16:0,54,642 0/0:26,2:28:36.06:0,36,752 0/0:18,0:18:51.13:0,51,570 0/0:14,0:14:42.08:0,42,455 0/0:18,0:18:51.13:0,51,591 11 65766842 . T C 181.92 . AC=3;AF=0.036;AN=84;BaseQRankSum=-27.303;DP=9841;DS;Dels=0.00;FS=136.505;HRun=1;HaplotypeScore=5.9398;InbreedingCoeff=-0.0368;MQ=59.57;MQ0=0;MQRankSum=-1.206;QD=0.24;ReadPosRankSum=-15.874 GT:AD:DP:GQ:PL 0/0:240,10:250:99:0,572,7172 0/0:233,11:244:99:0,568,6898 0/0:223,6:229:99:0,530,6573 0/0:240,10:250:99:0,592,6711 0/0:244,6:250:99:0,605,6982 0/0:240,9:250:99:0,544,6394 0/0:223,6:229:99:0,565,6480 0/0:238,12:250:99:0,568,6707 0/0:229,16:245:99:0,556,6746 0/0:214,10:224:99:0,544,6422 0/0:223,12:235:99:0,509,6791 0/0:202,19:221:99:0,454,5938 0/0:184,6:190:99:0,460,5523 0/0:213,11:224:99:0,511,6147 0/1:186,63:250:18.17:18,0,3696 0/0:205,7:213:99:0,523,6159 0/0:219,14:233:99:0,563,6623 0/0:219,13:232:99:0,489,6396 0/1:167,81:250:88.64:89,0,3450 0/0:240,10:250:99:0,573,6794 0/1:167,83:250:99:149,0,3653 0/0:223,7:231:99:0,529,6349 0/0:239,11:250:99:0,580,6551 0/0:235,15:250:99:0,557,6804 0/0:244,6:250:99:0,558,6658 0/0:234,16:250:99:0,535,6081 0/0:163,11:174:99:0,371,4795 0/0:215,9:225:99:0,493,6184 0/0:207,10:217:99:0,495,6303 0/0:226,12:238:99:0,574,6672 0/0:198,13:211:99:0,430,5778 0/0:243,7:250:99:0,629,7179 0/0:224,4:228:99:0,553,6378 0/0:206,18:225:99:0,494,6358 0/0:226,7:235:99:0,560,6611 0/0:227,4:231:99:0,580,7124 0/0:177,71:250:44.11:0,44,4127 0/0:224,11:236:99:0,562,6629 0/0:228,11:240:99:0,581,6874 0/0:236,13:250:99:0,553,7004 0/0:192,8:200:99:0,487,5740 0/0:217,14:231:99:0,562,6609 11 65788072 . C T 43783.70 . AC=84;AF=1.000;AN=84;DP=1360;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7768;InbreedingCoeff=-0.0000;MQ=58.57;MQ0=0;QD=32.19 GT:AD:DP:GQ:PL 1/1:0,24:24:69.21:822,69,0 1/1:0,27:27:69.21:862,69,0 1/1:0,25:25:63.19:778,63,0 1/1:0,49:49:99:1578,129,0 1/1:0,42:42:99:1410,114,0 1/1:0,37:37:90.29:1180,90,0 1/1:0,44:44:99:1422,111,0 1/1:0,32:32:78.23:980,78,0 1/1:0,25:25:66.21:826,66,0 1/1:0,30:30:75.23:919,75,0 1/1:0,28:28:75.23:924,75,0 1/1:0,23:23:63.20:787,63,0 1/1:0,30:30:75.22:925,75,0 1/1:0,31:31:75.24:965,75,0 1/1:0,80:80:99:2569,208,0 1/1:0,35:35:90.28:1125,90,0 1/1:0,25:25:66.19:814,66,0 1/1:0,35:35:90.26:1107,90,0 1/1:0,46:47:99:1424,117,0 1/1:0,25:25:66.20:821,66,0 1/1:0,40:40:99:1218,99,0 1/1:0,32:32:84.24:1015,84,0 1/1:0,61:61:99:1925,153,0 1/1:0,28:28:72.23:912,72,0 1/1:0,36:36:93.29:1181,93,0 1/1:0,20:20:48.15:618,48,0 1/1:0,17:17:39.11:490,39,0 1/1:0,28:28:75.22:900,75,0 1/1:0,23:23:63.18:740,63,0 1/1:0,27:27:75.23:921,75,0 1/1:0,27:27:75.23:917,75,0 1/1:0,26:26:63.19:794,63,0 1/1:0,26:27:72.22:868,72,0 1/1:0,27:27:69.22:867,69,0 1/1:0,37:37:99:1283,105,0 1/1:0,35:36:96.29:1172,96,0 1/1:0,28:28:72.23:902,72,0 1/1:0,30:30:81.24:971,81,0 1/1:0,28:28:78.24:949,78,0 1/1:0,28:28:75.22:923,75,0 1/1:0,32:33:87.27:1064,87,0 1/1:0,27:27:75.22:913,75,0 11 65790473 . A C 8.31 . AC=4;AF=0.048;AN=84;BaseQRankSum=-37.657;DP=3750;Dels=0.00;FS=693.954;HRun=3;HaplotypeScore=6.6012;InbreedingCoeff=-0.0860;MQ=59.25;MQ0=0;MQRankSum=2.127;QD=0.03;ReadPosRankSum=-16.936 GT:AD:DP:GQ:PL 0/0:60,20:80:83.45:0,83,1839 0/0:62,26:88:99:0,116,1781 0/0:42,11:54:26.77:0,27,1263 0/0:104,44:148:99:0,193,3256 0/0:104,38:142:99:0,216,3186 0/0:83,18:101:99:0,182,2749 0/0:64,21:85:52.78:0,53,1895 0/0:63,28:91:98.98:0,99,1774 0/0:58,23:81:99:0,111,1791 0/0:61,21:82:99:0,103,1866 0/0:46,13:59:83.17:0,83,1383 0/1:41,17:59:11.61:12,0,1124 0/0:47,17:65:40.88:0,41,1426 0/0:51,16:67:41.70:0,42,1441 0/0:149,53:202:57.86:0,58,3949 0/0:46,16:62:75.82:0,76,1314 0/0:53,22:75:23.45:0,23,1457 0/0:39,18:57:23.17:0,23,1100 0/0:68,18:87:99:0,134,1990 0/0:112,33:145:99:0,216,3409 0/1:84,34:118:14.90:15,0,2465 0/0:71,21:92:99:0,141,2120 0/0:116,50:166:99:0,257,3549 0/0:81,20:101:99:0,226,2655 0/0:87,26:113:99:0,128,2565 0/0:67,23:90:99:0,156,2077 0/0:55,10:65:99:0,133,1704 0/0:52,20:73:29.51:0,30,1393 0/1:46,20:67:34.55:35,0,1311 0/0:50,18:69:65.79:0,66,1535 0/0:40,21:61:2.19:0,2,1189 0/0:101,20:123:99:0,268,3143 0/0:87,23:110:99:0,183,2504 0/0:53,16:69:99:0,129,1782 0/0:59,25:84:1.17:5,0,1701 0/0:54,15:69:23.96:0,24,1557 0/0:56,24:80:1.10:5,0,1593 0/0:59,12:71:99:0,128,1702 0/0:44,22:66:1.54:4,0,1310 0/1:58,21:80:25.14:25,0,1669 0/0:50,21:71:67.71:0,68,1480 0/0:57,25:82:8.75:0,9,1673 11 65790527 . G T 44461.74 . 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T C 1158.10 . AC=2;AF=0.024;AN=84;BaseQRankSum=-9.004;DP=2668;Dels=0.00;FS=3.861;HRun=0;HaplotypeScore=1.2281;InbreedingCoeff=-0.0244;MQ=59.38;MQ0=0;MQRankSum=1.648;QD=13.47;ReadPosRankSum=-0.976 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,141,1742 0/0:44,0:44:99:0,108,1378 0/0:37,0:37:99:0,108,1306 0/0:144,0:144:99:0,367,4612 0/0:102,0:102:99:0,271,3425 0/0:77,0:77:99:0,214,2707 0/0:76,0:76:99:0,196,2519 0/0:79,0:79:99:0,214,2675 0/0:50,0:50:99:0,126,1573 0/0:48,0:48:99:0,123,1537 0/0:42,0:42:99:0,111,1342 0/0:56,0:56:99:0,156,1889 0/0:43,0:43:99:0,117,1446 0/0:39,0:39:99:0,105,1291 0/0:148,0:148:99:0,394,4826 0/0:41,0:41:99:0,120,1441 0/0:57,0:57:99:0,150,1884 0/0:42,0:42:99:0,108,1355 0/0:70,0:70:99:0,193,2388 0/0:93,0:93:99:0,235,2905 0/0:109,0:109:99:0,304,3719 0/0:55,0:55:99:0,153,1834 0/0:117,0:117:99:0,313,3946 0/0:86,0:86:99:0,226,2884 0/0:90,0:90:99:0,250,3112 0/0:82,0:82:99:0,220,2774 0/0:34,0:34:93.28:0,93,1136 0/0:49,0:49:99:0,141,1739 0/0:33,0:33:87.27:0,87,1094 0/0:57,0:57:99:0,150,1873 0/0:47,0:47:99:0,132,1633 0/0:91,0:91:99:0,238,2966 0/0:43,0:44:99:0,117,1436 0/1:16,23:39:99:602,0,477 0/0:48,0:49:99:0,135,1653 0/1:21,26:47:99:619,0,604 0/0:62,0:62:99:0,153,1887 0/0:45,0:45:99:0,114,1423 0/0:56,0:56:99:0,162,1965 0/0:49,0:49:99:0,129,1607 0/0:40,0:40:99:0,108,1333 0/0:44,0:45:99:0,126,1556 11 65994988 . C G 8.37 . 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C G 27.06 . AC=3;AF=0.036;AN=84;BaseQRankSum=-9.858;DP=1797;Dels=0.00;FS=200.404;HRun=1;HaplotypeScore=1.7729;InbreedingCoeff=-0.0519;MQ=58.42;MQ0=1;MQRankSum=-0.637;QD=0.33;ReadPosRankSum=-5.170 GT:AD:DP:GQ:PL 0/0:18,4:22:36.09:0,36,403 0/0:19,9:29:45.13:0,45,528 0/0:19,8:27:0.99:6,0,474 0/0:62,28:90:78.94:0,79,1390 0/0:56,23:79:84.18:0,84,1550 0/0:49,14:63:96.22:0,96,1139 0/0:30,8:38:54.15:0,54,628 0/0:54,14:69:86.98:0,87,1408 0/0:19,12:31:5.82:0,6,533 0/0:26,7:33:24.53:0,25,597 0/1:12,13:25:56.14:56,0,334 0/0:24,11:35:26.69:0,27,590 0/0:19,7:26:12.28:0,12,405 0/0:17,3:20:36.10:0,36,432 0/0:63,38:101:99:0,106,1487 0/0:21,10:31:39.12:0,39,480 0/0:25,5:30:63.18:0,63,753 0/0:18,8:26:12.50:0,12,432 0/0:35,12:47:20.90:0,21,790 0/0:66,25:91:99:0,124,1737 0/0:37,15:53:25.91:0,26,844 0/0:29,16:45:60.17:0,60,691 0/0:60,26:86:97.10:0,97,1723 0/0:39,13:52:46.87:0,47,938 0/0:34,10:44:55.48:0,55,862 0/0:38,9:47:72.21:0,72,892 0/1:16,6:22:25.02:25,0,351 0/0:26,12:38:22.36:0,22,615 0/0:20,8:28:51.09:0,51,587 0/0:18,3:21:42.10:0,42,488 0/0:15,10:25:36.10:0,36,421 0/0:55,11:66:99:0,111,1238 0/0:30,11:41:35.57:0,36,682 0/0:33,9:42:63.18:0,63,752 0/1:26,10:36:18.94:19,0,421 0/0:26,6:32:17.53:0,18,499 0/0:35,9:44:29.57:0,30,640 0/0:21,6:27:36.09:0,36,431 0/0:24,10:34:23.48:0,23,555 0/0:34,12:46:66.16:0,66,760 0/0:16,3:19:36.09:0,36,414 0/0:25,11:36:39.54:0,40,734 11 66002782 . C T 483.83 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.056;DP=1914;Dels=0.00;FS=3.799;HRun=0;HaplotypeScore=1.4854;InbreedingCoeff=-0.0244;MQ=58.70;MQ0=0;MQRankSum=-0.078;QD=8.64;ReadPosRankSum=0.173 GT:AD:DP:GQ:PL 0/0:35,0:35:90.26:0,90,1059 0/0:38,0:38:99:0,102,1211 0/0:27,0:27:72.19:0,72,845 0/0:110,0:110:99:0,307,3920 0/0:91,0:91:99:0,256,3339 0/0:85,0:85:99:0,238,3142 0/0:68,0:68:99:0,193,2532 0/0:86,0:86:99:0,235,2995 0/0:39,0:39:99:0,105,1274 0/0:33,0:33:90.23:0,90,1061 0/0:30,0:30:81.20:0,81,922 0/0:24,0:24:63.18:0,63,745 0/0:15,0:15:45.12:0,45,516 0/0:23,0:23:66.19:0,66,782 0/0:101,0:101:99:0,265,3172 0/0:21,0:21:63.15:0,63,706 0/0:21,0:21:63.19:0,63,754 0/0:24,0:24:72.20:0,72,833 0/0:46,0:47:99:0,132,1563 0/0:76,0:76:99:0,205,2365 0/0:39,0:39:99:0,102,1212 0/0:31,0:31:90.22:0,90,1024 0/0:108,0:108:99:0,301,3915 0/0:70,0:70:99:0,202,2569 0/0:76,0:77:99:0,211,2788 0/0:78,0:78:99:0,199,2558 0/0:22,0:22:63.19:0,63,754 0/0:42,0:42:99:0,117,1356 0/0:31,0:31:87.24:0,87,1028 0/0:27,0:27:69.19:0,69,823 0/0:17,0:17:45.12:0,45,515 0/0:57,0:57:99:0,153,1821 0/0:50,0:50:99:0,138,1640 0/0:31,0:31:87.23:0,87,1008 0/0:33,0:33:99:0,99,1166 0/0:34,0:34:99:0,102,1181 0/0:40,0:40:99:0,105,1221 0/0:22,1:23:66.17:0,66,746 0/0:30,0:30:87.26:0,87,1028 0/1:16,14:30:99:376,0,359 0/1:18,8:26:99:170,0,542 0/0:24,0:24:69.17:0,69,812 11 66002792 . C G 31.98 . AC=1;AF=0.012;AN=84;BaseQRankSum=-10.218;DP=1834;Dels=0.00;FS=64.612;HRun=3;HaplotypeScore=3.7409;InbreedingCoeff=-0.0361;MQ=58.64;MQ0=0;MQRankSum=-0.263;QD=0.91;ReadPosRankSum=-9.100 GT:AD:DP:GQ:PL 0/0:32,4:36:54.11:0,54,582 0/0:34,5:40:56.39:0,56,746 0/0:25,3:28:30.45:0,30,571 0/0:93,14:107:99:0,169,2052 0/0:69,11:80:99:0,119,1379 0/0:76,6:82:99:0,145,1533 0/0:67,7:74:99:0,138,1507 0/0:76,5:81:99:0,153,1732 0/0:32,5:37:36.40:0,36,567 0/0:27,2:30:57.07:0,57,578 0/0:23,6:29:20.36:0,20,391 0/0:23,4:27:51.13:0,51,564 0/0:11,5:16:33.04:0,33,333 0/0:21,2:23:39.08:0,39,412 0/0:80,17:97:99:0,120,1788 0/0:14,2:16:36.06:0,36,383 0/0:14,6:20:0.16:14,0,334 0/0:24,2:26:29.39:0,29,483 0/0:35,9:44:50.57:0,51,804 0/0:54,7:62:89.49:0,89,1116 0/0:32,3:35:51.51:0,52,800 0/0:33,2:35:56.38:0,56,743 0/0:94,11:105:99:0,165,2312 0/0:55,5:60:82.59:0,83,1180 0/0:64,7:71:99:0,102,1142 0/0:64,8:72:99:0,108,1359 0/0:23,2:25:48.09:0,48,527 0/0:35,4:39:75.11:0,75,761 0/0:27,3:30:35.49:0,35,606 0/0:21,3:24:14.41:0,14,396 0/0:14,3:17:39.08:0,39,412 0/0:51,9:60:99:0,117,1248 0/0:40,4:44:82.98:0,83,844 0/0:30,2:32:47.50:0,48,720 0/1:24,11:35:75.68:76,0,472 0/0:24,8:32:34.52:0,35,615 0/0:31,2:33:75.18:0,75,825 0/0:22,2:24:7.76:0,8,526 0/0:23,6:29:39.09:0,39,418 0/0:20,7:27:1.39:4,0,397 0/0:22,3:26:12.94:0,13,430 0/0:19,5:24:36.05:0,36,377 11 66033149 . G A 403.69 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.857;DP=1174;Dels=0.00;FS=1.999;HRun=0;HaplotypeScore=1.1819;InbreedingCoeff=-0.0121;MQ=57.60;MQ0=1;MQRankSum=0.827;QD=13.02;ReadPosRankSum=-1.061 GT:AD:DP:GQ:PL 0/0:15,0:15:39.10:0,39,442 0/0:23,0:23:63.16:0,63,725 0/0:26,0:26:66.18:0,66,775 0/0:59,0:59:99:0,144,1755 0/0:41,0:41:99:0,105,1238 0/0:56,0:56:99:0,138,1678 0/0:32,1:33:49.45:0,49,963 0/0:25,0:25:66.20:0,66,819 0/0:14,0:14:36.10:0,36,428 0/0:15,0:15:45.12:0,45,516 0/0:24,0:24:63.17:0,63,738 0/0:18,0:19:45.12:0,45,528 0/0:13,0:13:33.08:0,33,389 0/0:20,0:20:51.15:0,51,637 0/0:70,0:70:99:0,183,2112 0/0:18,0:18:45.13:0,45,530 0/0:30,0:30:81.20:0,81,924 0/0:18,0:18:48.13:0,48,564 0/0:39,0:39:90.22:0,90,1052 0/0:24,0:24:69.18:0,69,775 0/0:36,0:36:96.27:0,96,1107 0/0:26,0:26:66.19:0,66,791 0/0:67,0:67:99:0,159,1989 0/0:32,0:32:78.23:0,78,965 0/0:35,0:35:87.24:0,87,1056 0/0:22,0:22:54.16:0,54,677 0/0:17,0:17:48.13:0,48,552 0/1:15,16:31:99:450,0,360 0/0:25,0:25:63.19:0,63,779 0/0:29,0:29:78.18:0,78,893 0/0:25,0:25:63.13:0,63,696 0/0:34,0:34:81.24:0,81,995 0/0:23,0:23:57.14:0,57,645 0/0:18,0:18:51.14:0,51,579 0/0:24,0:24:63.16:0,63,738 0/0:18,0:18:45.11:0,45,555 0/0:41,0:41:99:0,108,1244 0/0:16,0:16:36.07:0,36,419 0/0:22,0:22:60.10:0,60,650 0/0:14,0:14:42.11:0,42,465 0/0:21,0:21:57.14:0,57,659 0/0:16,0:16:42.09:0,42,465 11 66033214 . G C 189.07 . AC=7;AF=0.083;AN=84;BaseQRankSum=-9.713;DP=1062;Dels=0.00;FS=547.344;HRun=2;HaplotypeScore=0.7509;InbreedingCoeff=-0.1193;MQ=58.06;MQ0=0;MQRankSum=1.576;QD=0.80;ReadPosRankSum=-12.140 GT:AD:DP:GQ:PL 0/0:23,5:28:39.21:0,39,783 0/0:11,2:13:30.10:0,30,386 0/0:15,5:20:45.14:0,45,558 0/1:36,14:51:99:125,0,1259 0/0:30,9:39:21.53:0,22,1109 0/0:26,6:32:38.93:0,39,942 0/0:17,3:20:48.15:0,48,628 0/0:17,5:22:51.15:0,51,654 0/0:11,2:13:33.10:0,33,410 0/0:23,2:25:63.67:0,64,796 0/0:17,1:18:48.15:0,48,598 0/0:14,6:20:39.12:0,39,491 0/0:7,1:8:18.53:0,19,231 0/1:9,3:12:38.91:39,0,306 0/1:47,11:59:21.77:22,0,1499 0/0:25,5:30:39.99:0,40,880 0/1:17,14:32:46.18:46,0,494 0/0:13,3:16:39.12:0,39,470 0/0:31,2:34:87.26:0,87,1073 0/1:29,10:39:18.80:19,0,841 0/0:35,6:41:99:0,105,1277 0/0:15,3:18:13.76:0,14,492 0/0:27,6:33:17.13:0,17,1012 0/0:23,5:28:3.59:0,4,770 0/0:23,8:31:43.58:0,44,900 0/0:15,4:19:39.12:0,39,502 0/0:12,3:15:9.49:0,9,412 0/1:19,5:24:33.74:34,0,596 0/1:16,4:20:11.69:12,0,442 0/0:24,3:27:69.21:0,69,857 0/0:20,2:22:60.19:0,60,764 0/0:23,4:27:34.08:0,34,775 0/0:19,7:26:2.25:2,0,646 0/0:16,6:22:0.59:8,0,516 0/0:19,4:23:18.03:0,18,588 0/0:13,2:15:39.12:0,39,484 0/0:32,2:34:67.74:0,68,1161 0/0:19,4:23:25.63:0,26,642 0/0:23,3:26:11.99:0,12,743 0/0:14,2:16:42.13:0,42,529 0/0:18,4:22:24.68:0,25,637 0/0:17,2:19:50.01:0,50,596 11 66033214 . G GC 409.11 . AC=12;AF=0.143;AN=84;BaseQRankSum=10.764;DP=1163;FS=719.116;HRun=2;HaplotypeScore=113.4284;InbreedingCoeff=-0.2028;MQ=56.86;MQ0=0;MQRankSum=-1.310;QD=1.02;ReadPosRankSum=-14.665 GT:AD:DP:GQ:PL 0/0:28,0:28:32.03:0,32,791 0/0:14,0:14:27.08:0,27,335 0/0:19,0:19:0.26:0,0,391 0/1:58,0:58:99:143,0,1095 0/0:44,0:44:29.91:0,30,1029 0/0:38,0:38:6.92:0,7,748 0/0:23,0:23:48.15:0,48,595 0/0:26,0:25:42.12:0,42,508 0/0:12,0:12:27.08:0,27,335 0/0:27,0:27:24.57:0,25,729 0/0:19,0:19:48.10:0,48,565 0/0:22,0:22:36.11:0,36,446 0/1:9,0:9:4.88:5,0,201 0/1:12,0:12:30.34:30,0,295 0/1:65,0:65:78.69:79,0,1524 0/0:32,0:32:47.42:0,47,899 0/1:35,0:35:75.25:75,0,526 0/0:16,0:16:39.12:0,39,476 0/0:37,0:37:81.25:0,81,997 0/1:40,0:40:61.52:62,0,897 0/0:46,0:46:66.76:0,67,1031 0/1:21,0:21:15.36:15,0,466 0/1:45,0:45:24.03:24,0,893 0/1:31,0:31:16.37:16,0,709 0/0:33,0:31:42.24:0,42,757 0/0:21,0:21:36.11:0,36,446 0/0:17,0:17:11.14:0,11,372 0/0:26,0:26:2.86:0,0,613 0/1:22,0:22:43.73:44,0,535 0/0:30,0:30:34.66:0,35,784 0/0:24,0:24:51.16:0,51,633 0/0:28,0:28:13.48:0,13,752 0/0:30,0:30:1.38:0,1,557 0/1:23,0:23:20.37:20,0,498 0/0:23,0:23:22.39:0,22,587 0/0:15,0:15:39.12:0,39,484 0/1:36,6:42:40.55:41,0,961 0/0:22,0:22:30.24:0,30,634 0/0:26,0:26:21.34:0,21,768 0/0:19,0:19:0.36:0,0,473 0/0:22,0:22:31.26:0,31,634 0/0:21,0:21:4.49:0,4,570 11 66103481 . C T 384.93 . AC=4;AF=0.053;AN=76;BaseQRankSum=2.749;DP=164;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2546;InbreedingCoeff=-0.1122;MQ=56.86;MQ0=1;MQRankSum=1.453;QD=16.04;ReadPosRankSum=-1.064 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,69 0/0:4,0:4:9.02:0,9,108 ./. 0/0:9,0:9:24.07:0,24,294 0/0:8,0:8:18.05:0,18,224 0/0:3,0:3:9.03:0,9,113 0/1:2,5:7:47.25:155,0,47 0/0:2,0:2:3.01:0,3,42 0/0:1,0:1:3.01:0,3,32 ./. 0/0:1,0:1:3.01:0,3,38 0/0:1,0:1:3.01:0,3,32 0/0:3,0:3:9.01:0,9,88 0/1:1,1:2:25.53:32,0,26 0/1:5,4:9:99:116,0,131 0/1:1,5:6:15.38:164,0,15 0/0:5,0:5:15.03:0,15,157 0/0:7,0:7:18.05:0,18,202 0/0:4,0:4:12.02:0,12,122 0/0:6,0:6:18.05:0,18,204 0/0:5,0:5:15.04:0,15,163 0/0:7,0:7:21.04:0,21,232 0/0:8,0:8:24.05:0,24,269 0/0:2,0:2:6.02:0,6,76 0/0:3,0:3:9.03:0,9,107 0/0:5,0:5:15.05:0,15,184 0/0:4,0:4:9.01:0,9,102 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.02:0,9,96 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.02:0,9,96 0/0:4,0:4:12.03:0,12,134 0/0:8,0:8:24.07:0,24,279 0/0:3,0:4:9.01:0,9,90 ./. 0/0:5,0:5:15.04:0,15,161 0/0:7,0:7:21.04:0,21,216 0/0:4,0:4:12.03:0,12,134 0/0:2,0:2:6.02:0,6,64 0/0:3,0:3:9.02:0,9,93 ./. 0/0:3,0:3:6.02:0,6,81 11 66105194 . G A 7556.74 . AC=25;AF=0.298;AN=84;BaseQRankSum=-8.613;DP=729;Dels=0.00;FS=12.764;HRun=0;HaplotypeScore=0.4197;InbreedingCoeff=-0.0823;MQ=59.01;MQ0=0;MQRankSum=2.073;QD=19.48;ReadPosRankSum=0.124 GT:AD:DP:GQ:PL 0/0:15,0:15:42.13:0,42,513 0/1:8,7:15:99:194,0,242 0/1:6,5:11:99:124,0,163 1/1:0,36:36:99:1284,108,0 1/1:0,28:28:72.20:856,72,0 0/1:7,14:21:99:420,0,217 0/0:15,0:15:45.14:0,45,575 1/1:0,20:20:57.17:683,57,0 0/1:6,5:11:99:147,0,175 0/1:6,7:13:99:211,0,174 0/1:6,7:13:99:214,0,187 0/0:14,0:14:33.09:0,33,395 0/1:5,4:9:99:116,0,145 0/0:16,0:16:42.12:0,42,527 0/0:38,0:38:99:0,108,1329 0/0:16,0:16:45.11:0,45,548 0/1:2,5:7:57.57:150,0,58 0/0:21,0:21:51.14:0,51,617 0/0:29,0:30:81.24:0,81,999 0/1:17,11:28:99:308,0,512 0/0:24,0:24:63.18:0,63,754 0/1:9,13:22:99:396,0,221 0/1:16,15:31:99:454,0,520 0/0:14,0:14:39.13:0,39,508 0/0:15,0:15:45.14:0,45,566 0/0:13,0:14:39.13:0,39,528 0/0:9,0:9:24.07:0,24,301 0/1:7,4:11:99:104,0,233 0/1:5,5:10:99:142,0,145 0/0:13,0:13:33.11:0,33,430 0/1:8,8:16:99:240,0,222 0/1:7,17:24:99:553,0,196 0/0:25,0:25:69.21:0,69,872 0/0:13,0:13:39.12:0,39,472 0/1:4,8:12:93.87:247,0,94 0/0:10,0:10:30.07:0,30,343 0/1:8,11:19:99:205,0,245 0/1:4,6:10:99:183,0,125 0/1:9,11:21:99:324,0,204 0/0:16,0:16:45.14:0,45,571 0/0:10,0:10:30.06:0,30,346 0/0:13,0:13:39.12:0,39,491 11 66108763 . T C 1263.73 . AC=22;AF=0.262;AN=84;BaseQRankSum=-19.612;DP=1585;Dels=0.00;FS=1132.836;HRun=2;HaplotypeScore=1.4129;InbreedingCoeff=-0.3573;MQ=58.55;MQ0=0;MQRankSum=0.526;QD=1.43;ReadPosRankSum=-15.303 GT:AD:DP:GQ:PL 0/1:20,8:28:51.86:52,0,638 0/1:25,10:35:60.32:60,0,758 0/0:23,6:29:35.90:0,36,746 0/1:34,17:51:99:157,0,1060 0/1:35,17:52:19.58:20,0,1164 0/1:23,14:37:32.64:33,0,781 0/0:33,12:45:26.49:0,26,1096 0/0:32,8:40:90.73:0,91,1103 0/1:30,12:43:43.76:44,0,981 0/0:20,5:25:29.59:0,30,665 0/0:22,4:26:63.19:0,63,774 0/0:17,3:20:24.54:0,25,608 0/0:17,4:21:15.59:0,16,585 0/1:25,7:32:13.24:13,0,776 0/1:76,25:101:99:136,0,2361 0/1:30,13:43:85.10:85,0,910 0/1:23,14:37:99:160,0,615 0/0:27,4:32:11.51:0,12,805 0/0:39,8:47:26.87:0,27,1301 0/0:53,16:69:4.65:0,5,1553 0/0:37,4:41:18.84:0,19,1240 0/0:35,10:45:21.72:0,22,1084 0/1:48,18:66:85.61:86,0,1618 0/1:18,9:27:65.83:66,0,474 0/0:21,5:26:32.77:0,33,753 0/1:29,9:38:43.46:43,0,923 0/0:16,6:22:14.54:0,15,476 0/1:22,12:34:59.06:59,0,684 0/1:19,10:29:2.07:2,0,636 0/0:27,2:29:78.23:0,78,934 0/1:26,13:39:16.81:17,0,831 0/0:43,9:52:58.37:0,58,1379 0/0:23,7:30:40.50:0,40,741 0/0:16,5:21:1.59:0,2,471 0/1:19,8:27:27.43:27,0,641 0/0:36,10:46:48.10:0,48,1055 0/1:32,9:41:4.89:5,0,983 0/1:16,10:26:99:134,0,471 0/1:22,7:29:95.68:96,0,711 0/0:29,6:35:59.64:0,60,996 0/1:24,6:30:37.99:38,0,699 0/1:27,12:39:99:100,0,784 11 66131880 . G A 72.19 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.088;DP=591;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7572;InbreedingCoeff=-0.0159;MQ=58.16;MQ0=1;MQRankSum=-0.124;QD=7.22;ReadPosRankSum=-0.560 GT:AD:DP:GQ:PL 0/0:13,0:13:36.10:0,36,425 0/0:7,0:7:21.06:0,21,260 0/0:5,0:5:15.04:0,15,169 0/0:42,0:42:99:0,114,1450 0/0:36,0:36:96.29:0,96,1251 0/0:17,0:17:45.11:0,45,557 0/0:17,0:17:51.17:0,51,679 0/0:31,0:31:87.23:0,87,1078 0/0:18,0:18:48.15:0,48,592 0/0:6,0:6:18.05:0,18,208 0/0:5,0:5:15.04:0,15,185 0/0:5,0:5:15.04:0,15,172 0/0:10,0:10:30.06:0,30,340 0/0:7,0:7:21.06:0,21,243 0/0:34,0:34:87.25:0,87,1041 0/0:8,0:8:24.08:0,24,303 0/0:11,0:11:33.10:0,33,393 0/1:5,5:10:99:118,0,124 0/0:15,0:15:36.11:0,36,446 0/0:16,0:16:39.10:0,39,479 0/0:23,0:23:63.16:0,63,770 0/0:11,0:11:30.09:0,30,372 0/0:31,0:31:84.25:0,84,1084 0/0:8,0:8:24.08:0,24,315 0/0:19,0:19:57.18:0,57,738 0/0:17,0:17:42.13:0,42,551 0/0:4,0:4:12.03:0,12,144 0/0:7,0:7:21.06:0,21,246 0/0:6,0:6:18.05:0,18,212 0/0:9,0:9:27.08:0,27,336 0/0:7,0:7:21.06:0,21,261 0/0:15,0:15:45.13:0,45,545 0/0:12,0:12:33.09:0,33,378 0/0:13,0:13:36.11:0,36,440 0/0:16,0:16:45.13:0,45,534 0/0:5,0:5:12.04:0,12,153 0/0:27,0:27:69.20:0,69,825 0/0:7,0:7:18.06:0,18,222 0/0:8,0:8:24.07:0,24,295 0/0:9,0:9:24.08:0,24,302 0/0:8,0:8:24.07:0,24,287 0/0:16,0:16:48.12:0,48,564 11 66131890 . G A 83.69 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.598;DP=491;Dels=0.00;FS=13.573;HRun=0;HaplotypeScore=0.4269;InbreedingCoeff=-0.0312;MQ=58.28;MQ0=1;MQRankSum=0.310;QD=7.61;ReadPosRankSum=0.201 GT:AD:DP:GQ:PL 0/0:6,0:6:15.05:0,15,185 0/0:8,0:8:24.07:0,24,288 0/0:4,0:4:8.99:0,9,86 0/0:29,0:30:87.28:0,87,1129 0/0:29,0:29:87.28:0,87,1137 0/0:15,0:15:45.12:0,45,571 0/0:12,0:12:36.11:0,36,457 0/0:21,0:21:60.18:0,60,761 0/0:12,0:13:36.11:0,36,434 0/0:5,0:5:15.04:0,15,179 0/0:5,0:5:15.04:0,15,177 0/1:2,1:3:26.23:26,0,62 0/0:10,0:10:27.08:0,27,316 0/1:4,4:8:99:119,0,115 0/0:28,0:28:69.18:0,69,795 0/0:7,0:7:21.07:0,21,259 0/0:11,0:11:33.07:0,33,358 0/0:7,0:7:21.06:0,21,242 0/0:14,0:14:39.07:0,39,428 0/0:14,0:14:39.12:0,39,486 0/0:20,0:20:60.15:0,60,710 0/0:7,0:7:15.04:0,15,179 0/0:23,0:23:66.21:0,66,865 0/0:8,0:8:24.08:0,24,306 0/0:18,0:19:54.16:0,54,701 0/0:15,0:15:42.13:0,42,528 0/0:3,0:3:9.03:0,9,107 0/0:6,0:6:15.04:0,15,177 0/0:10,0:10:24.06:0,24,279 0/0:7,0:7:21.06:0,21,254 0/0:6,0:6:18.06:0,18,220 0/0:16,0:16:48.13:0,48,556 0/0:10,0:10:27.07:0,27,308 0/0:9,0:9:24.07:0,24,294 0/0:12,0:12:33.10:0,33,397 0/0:4,0:4:12.03:0,12,141 0/0:22,0:22:57.16:0,57,680 0/0:8,0:8:21.06:0,21,241 0/0:7,0:7:21.06:0,21,255 0/0:6,0:6:15.05:0,15,185 0/0:7,0:7:21.06:0,21,241 0/0:16,0:16:48.13:0,48,567 11 66260238 . T G 160.35 . 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A G 53430.65 . 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C T 2526.84 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.394;DP=3533;Dels=0.00;FS=4.870;HRun=1;HaplotypeScore=4.5343;InbreedingCoeff=-0.0244;MQ=59.32;MQ0=0;MQRankSum=2.333;QD=14.12;ReadPosRankSum=1.410 GT:AD:DP:GQ:PL 0/0:71,0:71:99:0,184,2207 0/0:89,0:89:99:0,223,2657 0/0:57,0:57:99:0,153,1764 0/0:138,0:138:99:0,370,4544 0/0:115,0:115:99:0,316,3908 0/1:49,46:95:99:1360,0,1544 0/0:96,0:96:99:0,235,3090 0/1:38,46:84:99:1230,0,994 0/0:73,0:73:99:0,202,2442 0/0:68,0:68:99:0,184,2224 0/0:76,0:76:99:0,214,2624 0/0:67,0:67:99:0,184,2145 0/0:77,0:77:99:0,205,2413 0/0:70,0:71:99:0,199,2306 0/0:195,1:196:99:0,481,6185 0/0:79,0:79:99:0,208,2548 0/0:70,0:70:99:0,187,2272 0/0:60,0:60:99:0,172,2172 0/0:105,0:107:99:0,283,3596 0/0:112,0:112:99:0,295,3614 0/0:139,0:139:99:0,361,4235 0/0:65,0:65:99:0,174,2045 0/0:137,0:137:99:0,358,4464 0/0:81,0:81:99:0,208,2694 0/0:115,0:115:99:0,283,3573 0/0:74,0:74:99:0,196,2491 0/0:54,0:54:99:0,132,1579 0/0:67,0:67:99:0,181,2227 0/0:67,0:67:99:0,190,2218 0/0:59,0:59:99:0,168,1903 0/0:89,0:89:99:0,232,2723 0/0:90,0:90:99:0,223,2676 0/0:58,0:58:99:0,153,1800 0/0:63,0:63:99:0,178,2136 0/0:74,0:74:99:0,193,2372 0/0:61,0:61:99:0,165,1927 0/0:88,0:89:99:0,238,2863 0/0:82,0:82:99:0,220,2703 0/0:80,0:81:99:0,214,2683 0/0:79,0:79:99:0,214,2493 0/0:51,0:51:99:0,150,1719 0/0:57,0:57:99:0,156,1801 11 66272237 . G A 28254.18 . AC=22;AF=0.262;AN=84;BaseQRankSum=-11.886;DP=3489;Dels=0.00;FS=15.450;HRun=0;HaplotypeScore=4.5559;InbreedingCoeff=0.0147;MQ=59.31;MQ0=0;MQRankSum=-1.136;QD=17.40;ReadPosRankSum=1.390 GT:AD:DP:GQ:PL 0/0:69,0:69:99:0,177,2154 0/0:88,1:89:99:0,189,2624 0/0:55,0:56:99:0,144,1699 0/0:136,0:136:99:0,364,4814 0/0:111,0:111:99:0,307,4012 0/1:46,47:93:99:1284,0,1492 0/1:50,47:97:99:1118,0,1444 0/0:83,0:83:99:0,208,2803 0/1:41,33:75:99:829,0,1171 0/1:24,42:67:99:1132,0,568 0/1:36,38:74:99:1081,0,1012 0/0:67,0:67:99:0,184,2211 0/0:78,0:78:99:0,211,2534 0/0:71,0:71:99:0,196,2332 1/1:2,186:191:99:5533,457,0 0/1:39,37:78:99:1028,0,983 0/1:34,39:73:99:1030,0,908 1/1:0,60:60:99:1903,165,0 1/1:2,102:105:99:3195,268,0 0/1:49,62:112:99:1696,0,1230 0/0:139,0:140:99:0,367,4437 0/0:65,0:65:99:0,175,2118 0/0:130,0:130:99:0,340,4518 0/1:42,37:80:99:990,0,1106 0/0:113,0:113:99:0,283,3763 0/1:40,33:73:99:863,0,1092 0/0:53,0:53:99:0,135,1638 0/1:26,41:67:99:1156,0,667 0/0:66,0:66:99:0,184,2176 0/0:59,0:59:99:0,171,2022 0/0:84,0:84:99:0,220,2712 0/0:88,0:89:99:0,217,2638 0/0:59,0:59:99:0,153,1822 0/1:29,33:62:99:911,0,793 0/1:35,37:73:99:973,0,910 0/0:61,0:62:99:0,159,1904 0/1:38,46:84:99:1203,0,1149 0/1:36,42:78:99:1119,0,986 0/1:36,46:82:99:1210,0,946 0/0:76,0:76:99:0,199,2314 0/0:51,0:51:99:0,150,1731 0/0:58,0:58:99:0,162,1967 11 66282095 . G A 47586.79 . AC=22;AF=0.262;AN=84;BaseQRankSum=-46.779;DP=6207;DS;Dels=0.00;FS=7.030;HRun=0;HaplotypeScore=3.6543;InbreedingCoeff=0.0147;MQ=59.22;MQ0=0;MQRankSum=2.762;QD=16.35;ReadPosRankSum=2.388 GT:AD:DP:GQ:PL 0/0:109,0:109:99:0,295,3716 0/0:105,0:106:99:0,295,3690 0/0:109,0:109:99:0,295,3732 0/0:232,0:232:99:0,626,8418 0/0:201,1:202:99:0,545,7383 0/1:94,94:188:99:2522,0,2850 0/1:98,80:178:99:2052,0,2972 0/0:186,1:187:99:0,463,6547 0/1:61,70:131:99:1905,0,1706 0/1:48,47:95:99:1309,0,1414 0/1:69,49:118:99:1242,0,1961 0/0:130,1:131:99:0,327,4415 0/0:103,0:103:99:0,289,3647 0/0:131,0:131:99:0,367,4655 1/1:2,243:247:99:7676,633,0 0/1:57,60:117:99:1522,0,1709 0/1:71,55:127:99:1400,0,2044 1/1:1,113:114:99:3465,267,0 1/1:0,209:211:99:6768,575,0 0/1:123,101:226:99:2578,0,3543 0/0:226,0:226:99:0,566,7144 0/0:132,0:132:99:0,358,4501 0/0:239,0:240:99:0,629,8547 0/1:94,79:173:99:2092,0,3039 0/0:177,0:177:99:0,467,6299 0/1:78,88:166:99:2329,0,2376 0/0:83,0:83:99:0,223,2807 0/1:69,59:128:99:1573,0,2034 0/0:123,0:123:99:0,334,4250 0/0:105,0:105:99:0,283,3589 0/0:100,0:100:99:0,277,3540 0/0:170,0:170:99:0,457,5767 0/0:163,0:163:99:0,421,5409 0/1:63,60:123:99:1638,0,1764 0/1:65,48:114:99:1223,0,1868 0/0:114,0:114:99:0,304,3827 0/1:99,110:211:99:2911,0,2778 0/1:51,64:116:99:1737,0,1389 0/1:67,60:127:99:1645,0,1866 0/0:129,0:129:99:0,346,4407 0/0:101,0:101:99:0,274,3463 0/0:123,0:123:99:0,343,4358 11 66297363 . C T 7930.18 . AC=23;AF=0.274;AN=84;BaseQRankSum=6.289;DP=956;Dels=0.00;FS=9.307;HRun=1;HaplotypeScore=0.8203;InbreedingCoeff=-0.0088;MQ=58.93;MQ0=0;MQRankSum=1.002;QD=17.78;ReadPosRankSum=-0.370 GT:AD:DP:GQ:PL 0/0:8,0:8:21.05:0,21,229 0/0:19,0:19:54.14:0,54,630 0/0:19,0:19:45.12:0,45,510 0/0:33,0:33:90.25:0,90,1063 0/0:45,0:45:99:0,111,1340 0/1:13,11:24:99:337,0,363 0/1:7,10:17:99:305,0,218 0/0:27,0:27:69.14:0,69,802 0/1:8,10:18:99:279,0,172 0/1:9,10:19:99:244,0,247 0/1:8,11:19:99:312,0,182 0/0:16,0:16:42.12:0,42,491 0/0:19,0:19:54.11:0,54,574 0/0:19,0:19:57.14:0,57,629 1/1:1,58:59:99:1876,159,0 0/1:16,9:25:99:213,0,393 0/1:11,7:18:99:172,0,278 1/1:0,19:19:54.15:634,54,0 1/1:0,26:26:72.21:891,72,0 0/1:20,18:38:99:480,0,485 0/0:25,0:25:72.14:0,72,791 0/0:21,0:21:60.16:0,60,664 0/0:40,1:41:73.50:0,74,1217 0/1:11,9:20:99:246,0,332 0/0:26,0:26:75.18:0,75,877 0/1:7,13:20:99:416,0,154 0/0:12,0:12:27.07:0,27,319 0/1:8,11:19:99:311,0,206 0/0:23,0:24:63.13:0,63,683 0/0:12,0:12:36.09:0,36,408 0/0:13,0:13:33.09:0,33,371 0/0:45,0:45:99:0,111,1285 0/0:25,0:25:72.14:0,72,762 0/1:9,7:16:99:203,0,229 0/1:9,5:14:99:141,0,252 0/0:22,0:22:63.15:0,63,708 0/1:12,16:28:99:453,0,212 0/1:6,7:13:99:180,0,131 0/1:10,9:20:99:232,0,289 0/0:18,0:18:54.14:0,54,593 0/1:13,1:14:3.89:4,0,315 0/0:21,0:21:63.12:0,63,694 11 66313203 . T C 1880.28 . AC=22;AF=0.262;AN=84;BaseQRankSum=-1.887;DP=305;Dels=0.00;FS=1.727;HRun=3;HaplotypeScore=0.3968;InbreedingCoeff=0.0679;MQ=58.47;MQ0=0;MQRankSum=-1.294;QD=15.04;ReadPosRankSum=-2.053 GT:AD:DP:GQ:PL 0/0:4,0:4:12.04:0,12,154 0/0:8,0:8:18.06:0,18,225 0/0:8,0:8:21.07:0,21,262 0/0:16,0:17:36.11:0,36,460 0/0:11,0:12:30.08:0,30,345 0/1:5,2:7:55.52:56,0,180 0/1:2,3:5:52.64:99,0,53 0/0:11,0:11:24.07:0,24,294 0/1:4,4:8:95.93:96,0,126 0/1:2,6:8:26.71:160,0,27 0/1:4,3:7:66.02:66,0,131 0/0:8,0:8:24.07:0,24,282 0/0:6,0:6:15.04:0,15,179 0/0:6,0:6:18.04:0,18,207 1/1:0,16:17:48.11:517,48,0 0/1:2,5:7:54.53:159,0,55 0/1:3,2:5:60.40:60,0,91 1/1:0,3:3:9.03:108,9,0 1/1:0,6:6:18.05:207,18,0 0/1:6,4:10:81.37:81,0,165 0/0:5,0:5:12.03:0,12,142 0/0:8,0:8:21.06:0,21,259 0/0:13,0:13:30.10:0,30,391 0/0:2,1:3:3.01:0,3,37 0/0:16,0:17:36.11:0,36,465 0/1:6,5:11:99:127,0,168 0/0:2,0:2:6.02:0,6,71 0/1:4,2:6:56.72:57,0,132 0/0:9,0:9:24.07:0,24,298 0/0:4,0:4:12.03:0,12,138 0/0:11,0:11:27.07:0,27,325 0/0:8,0:8:24.07:0,24,277 0/0:3,0:3:9.03:0,9,108 0/1:2,1:3:25.53:26,0,39 0/1:2,3:5:51.41:88,0,51 0/0:3,0:3:9.02:0,9,104 0/1:8,3:11:42.27:42,0,227 0/1:2,2:4:55.72:56,0,64 1/1:0,2:2:6.02:66,6,0 0/0:6,0:6:18.05:0,18,213 0/0:5,0:5:15.05:0,15,186 0/0:3,0:3:9.02:0,9,102 11 66328055 . A G 4206.41 . 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T C 48954.13 . 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A G 98394 . 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C T 68789.72 . AC=50;AF=0.595;AN=84;BaseQRankSum=-16.553;DP=3697;Dels=0.00;FS=4.521;HRun=3;HaplotypeScore=1.8866;InbreedingCoeff=0.0118;MQ=59.39;MQ0=0;MQRankSum=0.412;QD=23.24;ReadPosRankSum=-0.313 GT:AD:DP:GQ:PL 0/1:36,31:67:99:891,0,1003 1/1:0,42:42:99:1397,114,0 0/1:37,30:67:99:785,0,1071 0/0:187,3:190:99:0,465,6249 0/0:204,0:204:99:0,527,6907 1/1:0,140:140:99:4924,391,0 1/1:1,127:128:99:4182,304,0 0/1:62,65:128:99:1814,0,1701 0/1:24,40:64:99:1088,0,588 0/1:28,35:63:99:926,0,822 0/1:26,25:51:99:664,0,799 0/0:80,0:80:99:0,202,2518 0/0:57,1:58:99:0,134,1940 0/0:64,0:64:99:0,178,2193 1/1:0,223:223:99:7180,596,0 1/1:0,51:51:99:1629,135,0 0/1:39,44:83:99:1255,0,1042 1/1:0,53:53:99:1744,144,0 1/1:0,79:79:99:2619,217,0 0/1:56,59:115:99:1484,0,1627 0/1:37,52:90:99:1490,0,1055 0/0:80,1:81:99:0,181,2605 0/1:116,79:196:99:2168,0,3519 1/1:0,115:115:99:3835,304,0 1/1:1,158:159:99:5381,401,0 1/1:1,106:107:99:3439,246,0 0/1:25,22:47:99:589,0,697 0/1:17,35:52:99:1024,0,389 0/1:29,32:61:99:908,0,784 0/1:39,29:68:99:852,0,1138 0/0:60,0:60:99:0,165,2031 0/1:36,50:86:99:1284,0,1070 0/1:26,40:66:99:1159,0,668 1/1:0,73:73:99:2403,193,0 0/1:21,25:46:99:782,0,542 1/1:0,64:65:99:2283,187,0 0/1:40,50:90:99:1458,0,1055 0/1:26,33:59:99:963,0,722 0/1:35,20:55:99:505,0,1051 1/1:0,59:60:99:1921,156,0 1/1:0,51:52:99:1742,147,0 1/1:0,59:59:99:2020,165,0 11 66335548 . A G 2938.39 . 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T C 139335.22 . 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G A 1661.44 . 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G C 871.61 . 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G GC 2397.52 . 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C T 1836.83 . 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A T 3508.72 . 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T C 692.74 . 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C T 16.62 . AC=2;AF=0.059;AN=34;BaseQRankSum=-0.972;DP=27;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.2258;InbreedingCoeff=0.1792;MQ=57.18;MQ0=0;MQRankSum=0.139;QD=8.31;ReadPosRankSum=-1.065 GT:AD:DP:GQ:PL ./. 0/1:0,1:1:1.76:35,3,0 0/1:0,1:1:1.76:37,3,0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,34 ./. 0/0:3,0:3:6.02:0,6,77 0/0:1,0:1:3.01:0,3,33 ./. 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,39 ./. 0/0:3,0:3:6.02:0,6,78 ./. 0/0:4,0:4:12.04:0,12,153 ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,31 ./. ./. 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,39 ./. ./. 0/0:3,0:3:9:0,9,96 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,78 ./. ./. 0/0:1,0:1:3.01:0,3,39 ./. ./. 11 67200072 . T G 1330.71 . 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C T 407.77 . 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C T 426.34 . 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A G 25031.21 . AC=84;AF=1.000;AN=84;BaseQRankSum=1.642;DP=744;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.7603;InbreedingCoeff=-0.0012;MQ=58.61;MQ0=0;MQRankSum=0.355;QD=33.64;ReadPosRankSum=1.427 GT:AD:DP:GQ:PL 1/1:0,16:16:39.11:465,39,0 1/1:0,11:11:30.09:363,30,0 1/1:0,7:7:18.06:232,18,0 1/1:0,42:42:99:1478,117,0 1/1:1,33:34:73.59:1162,74,0 1/1:0,32:32:90.26:1139,90,0 1/1:0,29:29:66.21:861,66,0 1/1:0,18:18:51.16:659,51,0 1/1:0,15:15:39.12:501,39,0 1/1:0,8:8:24.07:291,24,0 1/1:0,12:12:33.10:417,33,0 1/1:0,11:11:27.08:331,27,0 1/1:0,9:9:27.08:331,27,0 1/1:0,11:11:33.05:367,33,0 1/1:0,38:38:99:1270,105,0 1/1:0,16:16:42.12:510,42,0 1/1:0,10:10:27.07:313,27,0 1/1:0,14:14:42.12:503,42,0 1/1:0,24:24:69.18:800,69,0 1/1:0,27:27:66.16:782,66,0 1/1:0,24:24:66.20:794,66,0 1/1:0,13:13:36.11:436,36,0 1/1:0,52:53:99:1865,144,0 1/1:0,18:18:45.14:586,45,0 1/1:0,20:20:57.17:718,57,0 1/1:0,25:25:66.20:832,66,0 1/1:0,11:11:33.10:396,33,0 1/1:0,8:8:21.04:248,21,0 1/1:0,4:4:12.04:156,12,0 1/1:0,17:17:51.15:621,51,0 1/1:0,16:16:36.10:428,36,0 1/1:0,33:33:93.28:1136,93,0 1/1:0,12:12:33.10:401,33,0 1/1:0,10:10:30.10:382,30,0 1/1:0,8:8:24.06:279,24,0 1/1:0,10:10:27.08:321,27,0 1/1:0,18:18:45.10:509,45,0 1/1:0,13:13:36.11:441,36,0 1/1:0,11:11:33.10:403,33,0 1/1:0,10:10:30.09:356,30,0 1/1:0,12:12:36.10:432,36,0 1/1:0,14:14:42.12:514,42,0 11 67263767 . A G 46236.32 . AC=84;AF=1.000;AN=84;BaseQRankSum=0.280;DP=1434;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.1183;InbreedingCoeff=-0.0000;MQ=58.96;MQ0=0;MQRankSum=-0.225;QD=32.24;ReadPosRankSum=0.853 GT:AD:DP:GQ:PL 1/1:0,28:28:81.21:910,81,0 1/1:0,30:30:81.23:947,81,0 1/1:0,25:25:69.19:808,69,0 1/1:0,89:89:99:3114,250,0 1/1:0,72:72:99:2492,199,0 1/1:0,32:32:90.22:1061,90,0 1/1:0,34:34:90.27:1119,90,0 1/1:0,40:40:99:1292,102,0 1/1:0,26:26:72.20:845,72,0 1/1:0,23:23:63.19:752,63,0 1/1:0,27:27:81.22:909,81,0 1/1:0,25:25:66.17:734,66,0 1/1:0,22:22:63.17:734,63,0 1/1:0,21:22:60.16:710,60,0 1/1:1,70:73:99:2303,167,0 1/1:0,24:24:57.14:669,57,0 1/1:0,24:24:66.18:780,66,0 1/1:0,33:33:90.23:1029,90,0 1/1:0,43:44:99:1379,120,0 1/1:0,56:56:99:1711,147,0 1/1:0,36:37:93.25:1094,93,0 1/1:0,29:29:81.22:934,81,0 1/1:0,69:69:99:2374,193,0 1/1:0,46:46:99:1570,129,0 1/1:0,41:41:99:1465,114,0 1/1:0,38:38:99:1331,105,0 1/1:0,23:23:54.15:661,54,0 1/1:0,22:22:60.15:686,60,0 1/1:0,21:21:57.16:658,57,0 1/1:0,26:26:66.16:774,66,0 1/1:0,23:23:60.15:693,60,0 1/1:0,49:50:99:1570,132,0 1/1:0,38:39:99:1162,99,0 1/1:0,27:27:69.19:804,69,0 1/1:0,20:20:57.14:639,57,0 1/1:0,26:26:72.17:822,72,0 1/1:0,31:31:93.24:1066,93,0 1/1:0,26:27:72.18:816,72,0 1/1:0,19:19:54.14:615,54,0 1/1:0,21:21:54.15:637,54,0 1/1:0,22:22:60.14:683,60,0 1/1:0,28:28:78.20:888,78,0 11 67265728 . G C 92.09 . AC=10;AF=0.119;AN=84;BaseQRankSum=-7.884;DP=701;Dels=0.00;FS=67.930;HRun=1;HaplotypeScore=2.7829;InbreedingCoeff=-0.1776;MQ=56.68;MQ0=0;MQRankSum=-1.124;QD=0.66;ReadPosRankSum=1.294 GT:AD:DP:GQ:PL 0/0:11,2:13:5.39:0,5,301 0/0:11,1:12:30.08:0,30,353 0/0:13,1:14:24.03:0,24,261 0/0:26,9:35:60.14:0,60,712 0/0:23,9:32:2.98:0,0,496 0/0:26,2:28:42.10:0,42,484 0/0:16,1:17:30.08:0,30,358 0/0:22,6:28:51.06:0,51,607 0/0:11,1:12:4.37:0,4,268 0/0:8,0:8:12.03:0,12,139 0/0:11,2:13:1.38:0,1,231 0/0:10,1:11:27.08:0,27,315 0/0:6,0:6:3.01:0,3,38 0/0:8,4:12:21.05:0,21,228 0/0:24,11:35:2.92:0,0,478 0/1:11,6:17:25.06:25,0,226 0/0:14,0:14:36.07:0,36,415 0/0:14,3:17:27.05:0,27,303 0/0:10,3:13:27.07:0,27,307 0/0:14,2:16:33.09:0,33,389 0/0:10,1:11:24.04:0,24,277 0/0:12,3:16:27.04:0,27,300 0/0:25,9:34:12.76:0,13,598 0/0:15,2:18:39.12:0,39,496 0/1:14,5:19:12.07:12,0,476 0/0:15,4:19:15.40:0,15,404 0/0:5,0:5:3.01:0,3,32 0/0:12,4:16:30.08:0,30,341 0/1:4,3:7:48.01:48,0,96 0/1:11,2:13:21.20:21,0,276 0/0:16,2:18:24.08:0,24,304 0/0:22,5:27:48.11:0,48,568 0/0:11,6:17:8.37:0,8,287 0/1:6,1:7:11.44:11,0,191 0/0:12,4:16:5.35:0,5,234 0/0:8,2:10:15.02:0,15,155 0/1:16,6:23:22.67:23,0,375 0/1:13,3:16:38.01:38,0,191 0/1:12,2:14:11.93:12,0,258 0/0:16,3:19:30.07:0,30,352 0/1:9,2:11:4.58:5,0,218 0/1:8,4:12:18.39:18,0,131 11 67265728 . GCAGCCAGT G 74.91 . AC=6;AF=0.071;AN=84;BaseQRankSum=1.239;DP=698;FS=327.758;HRun=0;HaplotypeScore=111.4377;InbreedingCoeff=-0.1282;MQ=56.93;MQ0=0;MQRankSum=1.594;QD=0.70;ReadPosRankSum=-0.995 GT:AD:DP:GQ:PL 0/0:12,0:12:33.09:0,33,1090 0/0:13,0:13:2.76:0,3,1082 0/1:13,0:13:26.34:26,0,908 0/1:34,0:34:23.27:23,0,2777 0/0:31,0:31:75.21:0,75,2692 0/0:28,0:26:8.74:0,9,2311 0/0:18,0:18:39.12:0,39,1307 0/0:28,0:28:63.20:0,63,2332 0/0:12,0:12:21.07:0,21,847 0/0:9,0:9:2.59:1,0,754 0/0:12,0:12:33.11:0,33,1301 0/0:11,0:11:18.05:0,18,676 0/0:7,0:7:21.07:0,21,794 0/0:12,0:12:27.09:0,27,1112 0/0:40,0:40:15.34:0,15,3298 0/0:18,0:18:48.16:0,48,1738 0/1:15,0:15:42.54:43,0,746 0/0:17,0:17:39.13:0,39,1559 0/0:11,0:11:24.08:0,24,826 0/0:18,0:18:39.12:0,39,1480 0/0:12,0:12:24.08:0,24,816 0/0:15,0:15:1.31:0,1,935 0/0:31,0:31:72.22:0,72,2415 0/0:17,0:17:42.12:0,42,1458 0/0:18,0:18:39.12:0,39,1306 0/0:16,0:15:30.08:0,30,978 0/0:5,0:5:12.04:0,12,449 0/0:17,0:17:14.48:0,14,1561 0/0:8,0:8:21.07:0,21,826 0/1:13,0:13:52.24:52,0,732 0/0:18,0:18:12.41:0,12,1552 0/0:28,0:27:33.47:0,33,2211 0/0:12,0:13:36.12:0,36,1232 0/0:7,0:7:1.24:5,0,637 0/1:18,0:18:6.03:6,0,1808 0/0:11,0:11:2.66:1,0,847 0/0:22,0:22:54.18:0,54,1839 0/0:16,0:16:42.14:0,42,1591 0/1:9,5:14:28.21:28,0,908 0/0:20,0:20:1.06:6,0,1375 0/0:9,0:9:24.08:0,24,902 0/0:11,0:11:24.08:0,24,908 11 67265729 . C G 161.19 . AC=7;AF=0.083;AN=84;BaseQRankSum=-7.561;DP=698;Dels=0.01;FS=315.219;HRun=3;HaplotypeScore=2.4049;InbreedingCoeff=-0.1277;MQ=56.93;MQ0=0;MQRankSum=3.162;QD=1.33;ReadPosRankSum=-5.680 GT:AD:DP:GQ:PL 0/0:11,1:12:33.09:0,33,389 0/0:12,1:13:0.68:8,0,301 0/1:9,4:13:35.59:36,0,295 0/0:27,7:34:16.99:0,17,888 0/0:27,4:31:72.22:0,72,940 0/0:23,5:28:14.17:0,14,665 0/0:14,4:18:33.11:0,33,439 0/0:22,6:28:51.16:0,51,667 0/0:7,5:12:18.06:0,18,228 0/0:6,3:9:1.05:6,0,201 0/0:11,1:12:33.09:0,33,399 0/0:5,6:11:15.05:0,15,194 0/0:7,0:7:21.07:0,21,260 0/0:9,3:12:27.08:0,27,335 0/1:32,8:40:13.52:14,0,896 0/0:15,3:18:39.12:0,39,472 0/1:9,6:15:89.09:89,0,242 0/0:13,4:17:33.10:0,33,416 0/0:8,3:11:15.05:0,15,187 0/0:14,4:18:33.10:0,33,414 0/0:8,4:12:15.04:0,15,179 0/1:10,4:15:30.94:31,0,270 0/0:24,7:31:69.22:0,69,900 0/0:14,3:17:42.14:0,42,570 0/0:14,4:18:36.12:0,36,483 0/0:10,6:16:27.08:0,27,333 0/0:5,0:5:12.04:0,12,148 0/0:15,2:17:6.88:0,7,444 0/0:7,1:8:15.05:0,15,194 0/1:7,6:13:62.33:62,0,183 0/0:13,5:18:1.73:0,2,363 0/0:20,8:28:25.84:0,26,685 0/0:12,1:13:30.10:0,30,380 0/1:6,1:7:9.54:10,0,191 0/1:16,2:18:24.20:24,0,455 0/0:9,2:11:17.27:0,17,197 0/0:20,2:22:42.10:0,42,513 0/0:15,1:16:39.11:0,39,475 0/0:9,0:9:27.08:0,27,334 0/0:14,6:20:7.60:0,8,355 0/0:8,1:9:24.08:0,24,304 0/0:9,2:11:24.08:0,24,302 11 67288594 . C T 41070.17 . AC=50;AF=0.595;AN=84;BaseQRankSum=20.570;DP=2161;Dels=0.00;FS=0.618;HRun=0;HaplotypeScore=1.1972;InbreedingCoeff=0.0117;MQ=58.79;MQ0=0;MQRankSum=3.075;QD=22.37;ReadPosRankSum=1.347 GT:AD:DP:GQ:PL 0/1:19,14:33:99:395,0,484 0/0:45,0:46:99:0,126,1382 0/1:10,17:27:99:505,0,236 1/1:0,113:113:99:3928,316,0 0/1:53,64:117:99:1978,0,1410 0/0:90,0:90:99:0,238,2844 0/1:30,24:54:99:680,0,856 0/1:48,30:78:99:770,0,1397 0/1:15,17:32:99:536,0,346 1/1:0,35:35:99:1178,99,0 0/1:17,13:30:99:318,0,472 1/1:1,28:29:81.24:969,81,0 1/1:0,29:29:75.23:934,75,0 0/1:14,22:36:99:664,0,333 0/1:75,61:136:99:1591,0,1891 0/1:24,15:39:99:411,0,635 1/1:1,29:30:54.77:1007,55,0 0/1:13,14:27:99:364,0,326 1/1:0,67:67:99:2286,187,0 1/1:0,61:61:99:2088,172,0 1/1:0,61:61:99:2123,175,0 1/1:0,44:44:99:1492,123,0 0/1:68,47:115:99:1376,0,1939 1/1:0,70:70:99:2314,184,0 1/1:0,67:67:99:2371,190,0 1/1:0,62:62:99:2063,168,0 1/1:0,24:24:69.21:844,69,0 0/1:19,26:45:99:823,0,449 1/1:0,37:37:99:1336,108,0 0/1:16,18:34:99:531,0,422 0/0:30,0:30:90.21:0,90,979 0/1:27,27:54:99:718,0,705 1/1:0,43:43:99:1458,123,0 0/1:21,25:46:99:761,0,501 0/1:18,20:38:99:567,0,433 0/1:24,23:47:99:664,0,565 0/0:54,0:54:99:0,156,1722 0/0:42,0:42:99:0,120,1298 0/1:27,18:45:99:506,0,661 0/0:40,0:40:99:0,105,1202 0/0:22,1:23:29.73:0,30,641 0/1:12,18:30:99:519,0,293 11 67290169 . C G 6.75 . AC=3;AF=0.065;AN=46;BaseQRankSum=-2.509;DP=81;Dels=0.00;FS=10.224;HRun=1;HaplotypeScore=0.1890;InbreedingCoeff=-0.1919;MQ=55.36;MQ0=0;MQRankSum=0.533;QD=0.84;ReadPosRankSum=-1.391 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,69 ./. 0/0:1,0:1:3.01:0,3,38 ./. 0/0:1,1:2:3.01:0,3,41 ./. ./. ./. 0/0:1,1:2:3.01:0,3,39 0/0:3,1:4:3.01:0,3,36 0/0:1,1:2:3.01:0,3,30 ./. 0/0:4,0:4:9.02:0,9,104 0/1:1,1:2:23.61:28,0,24 0/0:8,1:9:18.05:0,18,205 ./. 0/0:2,1:3:3.01:0,3,34 ./. 0/0:3,0:3:6.01:0,6,57 0/0:5,0:5:9.02:0,9,96 0/0:4,1:5:9.02:0,9,101 0/0:5,1:6:12.04:0,12,142 0/0:2,0:2:3.01:0,3,31 ./. ./. ./. 0/0:2,0:2:6.02:0,6,71 ./. 0/0:2,0:2:6.02:0,6,68 ./. ./. 0/0:3,1:4:3.01:0,3,32 ./. ./. ./. 0/1:1,1:2:17.68:24,0,18 0/0:3,0:3:9.02:0,9,89 ./. 0/0:1,0:1:3.01:0,3,38 0/1:3,1:4:15.63:16,0,92 0/0:1,0:1:3.01:0,3,31 ./. 11 67352689 . A G 11010.90 . 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G C 2125.27 . 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G A 9862.26 . AC=11;AF=0.131;AN=84;BaseQRankSum=-19.203;DP=3599;DS;Dels=0.00;FS=0.504;HRun=0;HaplotypeScore=3.4397;InbreedingCoeff=-0.1507;MQ=59.20;MQ0=0;MQRankSum=-0.201;QD=12.94;ReadPosRankSum=0.959 GT:AD:DP:GQ:PL 0/0:66,0:67:99:0,184,2203 0/1:16,27:43:99:791,0,397 0/1:23,26:49:99:703,0,633 0/0:222,0:222:99:0,620,8013 0/0:215,0:215:99:0,605,7799 0/0:209,0:210:99:0,554,7133 0/0:146,0:146:99:0,385,4974 0/0:154,0:154:99:0,418,5365 0/0:40,0:40:99:0,114,1423 0/0:51,0:52:99:0,144,1747 0/0:48,0:48:99:0,138,1665 0/0:61,0:61:99:0,181,2186 0/1:26,23:49:99:596,0,671 0/0:26,0:26:72.23:0,72,902 0/0:139,0:141:99:0,376,4579 0/0:46,0:46:99:0,129,1590 0/0:50,0:50:99:0,144,1703 0/1:17,19:36:99:528,0,393 0/1:47,47:94:99:1234,0,1278 0/0:110,0:111:99:0,295,3644 0/0:81,0:81:99:0,226,2775 0/0:83,0:83:99:0,211,2593 0/1:121,101:222:99:2719,0,3514 0/0:148,0:148:99:0,409,5284 0/0:169,0:169:99:0,457,5952 0/0:149,1:150:99:0,376,5167 0/0:53,0:53:99:0,147,1772 0/1:18,14:32:99:389,0,467 0/0:38,0:38:96.25:0,96,1157 0/0:55,0:55:99:0,147,1802 0/0:56,0:56:99:0,165,2021 0/0:97,1:99:99:0,262,3234 0/0:69,0:69:99:0,199,2465 0/0:54,0:54:99:0,156,1935 0/0:50,0:50:99:0,138,1690 0/0:42,0:42:99:0,102,1263 0/1:44,35:79:99:897,0,1255 0/0:50,0:50:99:0,135,1658 0/1:34,25:59:99:624,0,1072 0/1:22,30:53:99:889,0,573 0/1:27,19:46:99:492,0,827 0/0:51,0:51:99:0,138,1672 11 67430762 . T C 64761.74 . AC=73;AF=0.869;AN=84;BaseQRankSum=-13.577;DP=2344;DS;Dels=0.00;FS=7.557;HRun=0;HaplotypeScore=1.9620;InbreedingCoeff=-0.1507;MQ=58.98;MQ0=0;MQRankSum=-0.129;QD=27.63;ReadPosRankSum=-1.530 GT:AD:DP:GQ:PL 1/1:0,25:25:66.17:715,66,0 0/1:16,14:30:99:352,0,433 0/1:15,9:24:99:193,0,472 1/1:0,146:146:99:4925,421,0 1/1:0,128:128:99:4449,376,0 1/1:0,114:115:99:3887,337,0 1/1:0,89:89:99:2993,256,0 1/1:0,123:125:99:4198,361,0 1/1:0,28:28:81.18:860,81,0 1/1:0,33:33:96.23:1027,96,0 1/1:0,40:40:99:1225,114,0 1/1:0,22:22:66.15:686,66,0 0/1:11,12:23:99:313,0,336 1/1:0,28:28:81.20:878,81,0 1/1:0,82:82:99:2374,223,0 1/1:0,49:49:99:1495,138,0 1/1:0,37:38:99:1167,108,0 0/1:15,12:27:99:291,0,433 0/1:32,27:59:99:667,0,929 1/1:0,57:57:99:1785,162,0 1/1:0,60:60:99:1804,168,0 1/1:0,54:54:99:1634,153,0 0/1:82,89:171:99:2545,0,2349 1/1:0,96:96:99:3201,274,0 1/1:0,104:104:99:3531,301,0 1/1:0,75:75:99:2539,217,0 1/1:0,21:22:63.16:682,63,0 0/1:19,14:33:99:351,0,523 1/1:0,36:36:99:1096,102,0 1/1:0,32:32:93.18:963,93,0 1/1:0,41:41:99:1310,120,0 1/1:0,68:68:99:2087,195,0 1/1:0,44:44:99:1405,132,0 1/1:0,38:38:99:1142,108,0 1/1:0,25:25:72.18:786,72,0 1/1:0,28:28:84.18:881,84,0 0/1:35,28:64:99:690,0,984 1/1:0,46:47:99:1451,138,0 0/1:17,16:33:99:384,0,472 0/1:22,19:41:99:439,0,645 0/1:17,17:34:99:443,0,461 1/1:0,30:30:87.19:917,87,0 11 67431914 . G A 10706.18 . AC=11;AF=0.131;AN=84;BaseQRankSum=1.545;DP=3493;DS;Dels=0.00;FS=7.553;HRun=0;HaplotypeScore=2.6921;InbreedingCoeff=-0.1507;MQ=58.41;MQ0=1;MQRankSum=0.139;QD=13.37;ReadPosRankSum=-0.901 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,126,1492 0/1:37,26:63:99:676,0,978 0/1:24,25:49:99:752,0,595 0/0:194,0:194:99:0,536,6803 0/0:194,1:195:99:0,473,6428 0/0:115,0:115:99:0,322,4041 0/0:110,0:110:99:0,280,3590 0/0:125,0:125:99:0,322,4052 0/0:52,0:53:99:0,138,1632 0/0:56,0:56:99:0,138,1593 0/0:46,0:46:99:0,123,1395 0/0:57,0:57:99:0,150,1741 0/1:34,22:56:99:598,0,847 0/0:60,0:60:99:0,156,1782 0/0:183,0:184:99:0,466,5481 0/0:53,0:53:99:0,135,1563 0/0:53,0:53:99:0,126,1489 0/1:25,18:43:99:455,0,719 0/1:44,53:100:99:1410,0,1051 0/0:131,0:131:99:0,319,3804 0/0:113,0:115:99:0,280,3278 0/0:80,1:81:99:0,162,2157 0/1:90,95:186:99:2851,0,2704 0/0:124,0:125:99:0,331,4136 0/0:121,0:122:99:0,325,4102 0/0:109,1:110:99:0,249,3618 0/0:35,0:35:90.25:0,90,1088 0/1:33,41:74:99:1113,0,900 0/0:37,0:38:99:0,102,1144 0/0:73,0:73:99:0,183,2152 0/0:43,0:43:99:0,117,1378 0/0:131,0:131:99:0,337,4004 0/0:85,1:87:99:0,218,2854 0/0:38,0:38:99:0,108,1239 0/0:50,0:50:99:0,126,1476 0/0:54,0:54:99:0,120,1426 0/1:54,42:96:99:1227,0,1316 0/0:42,0:42:99:0,105,1236 0/1:30,25:55:99:642,0,724 0/1:17,14:31:99:401,0,349 0/1:26,22:48:99:580,0,588 0/0:62,0:63:99:0,171,1963 11 67765163 . A AG 44499.27 . AC=84;AF=1.000;AN=84;DP=1159;FS=0.000;HRun=1;HaplotypeScore=71.5238;InbreedingCoeff=-0.0000;MQ=60.24;MQ0=0;QD=38.39 GT:AD:DP:GQ:PL 1/1:1,26:27:78.25:1131,78,0 1/1:2,20:22:57.19:841,57,0 1/1:3,15:18:48.14:682,48,0 1/1:4,54:58:99:2341,163,0 1/1:4,32:36:93.31:1370,93,0 1/1:0,20:20:57.18:817,57,0 1/1:3,20:23:60.20:876,60,0 1/1:2,28:30:81.20:1088,81,0 1/1:2,15:17:45.13:652,45,0 1/1:3,21:24:63.19:886,63,0 1/1:3,16:19:45.14:655,45,0 1/1:0,17:17:51.17:744,51,0 1/1:1,17:18:51.17:762,51,0 1/1:3,14:17:42.12:606,42,0 1/1:9,70:79:99:3025,208,0 1/1:5,27:32:78.26:1140,78,0 1/1:1,16:17:48.16:707,48,0 1/1:2,13:15:39.12:551,39,0 1/1:8,30:38:90.22:1221,90,0 1/1:4,45:49:99:1900,131,0 1/1:11,34:45:96.28:1320,96,0 1/1:4,42:46:99:1836,126,0 1/1:4,33:37:96.30:1385,96,0 1/1:2,28:30:87.29:1276,87,0 1/1:4,26:29:78.26:1155,78,0 1/1:2,19:20:57.18:830,57,0 1/1:0,16:16:48.16:719,48,0 1/1:1,14:15:42.14:614,42,0 1/1:3,15:18:45.12:648,45,0 1/1:0,10:10:30.10:449,30,0 1/1:2,9:11:25.90:362,26,0 1/1:4,41:45:99:1793,123,0 1/1:3,26:29:78.24:1117,78,0 1/1:0,22:22:60.20:897,60,0 1/1:4,18:22:54.16:773,54,0 1/1:4,20:24:60.20:891,60,0 1/1:8,37:45:99:1640,111,0 1/1:0,26:26:78.26:1147,78,0 1/1:2,21:23:60.19:863,60,0 1/1:2,26:28:75.25:1106,75,0 1/1:0,17:18:54.18:783,54,0 1/1:1,21:22:60.20:900,60,0 11 67765164 . G GC 12939.70 . AC=84;AF=1.000;AN=84;BaseQRankSum=1.720;DP=1121;FS=1.117;HRun=2;HaplotypeScore=142.3275;InbreedingCoeff=-0.0077;MQ=60.04;MQ0=0;MQRankSum=-4.632;QD=11.54;ReadPosRankSum=7.137 GT:AD:DP:GQ:PL 1/1:27,0:27:69.22:364,69,0 1/1:26,0:26:51.07:264,51,0 1/1:16,0:16:35.82:163,36,0 1/1:55,0:55:99:576,124,0 1/1:34,0:34:56:300,56,0 1/1:20,0:20:49.45:289,49,0 1/1:20,0:20:45.52:218,46,0 1/1:27,0:27:16.21:234,16,0 1/1:16,0:16:37.70:189,38,0 1/1:23,0:23:53.79:276,54,0 1/1:19,0:19:41.30:217,41,0 1/1:16,0:16:45.24:289,45,0 1/1:18,0:18:47.22:248,47,0 1/1:15,0:15:35.33:191,35,0 1/1:75,0:75:99:1015,153,0 1/1:32,1:33:66.14:310,66,0 1/1:17,0:18:43.52:214,44,0 1/1:15,0:15:4.74:135,5,0 1/1:33,2:35:67.70:388,68,0 1/1:50,0:50:93.40:571,93,0 1/1:41,2:43:70.31:380,70,0 1/1:43,0:43:76.56:526,77,0 1/1:33,0:33:74.69:354,75,0 1/1:28,1:29:69.66:345,70,0 1/1:28,0:27:68.32:403,68,0 1/1:19,0:18:48.08:276,48,0 1/1:16,0:16:43.04:214,43,0 1/1:14,0:14:34.58:179,35,0 1/1:19,0:19:37.26:169,37,0 1/1:11,0:11:28.23:171,28,0 1/1:9,1:10:2.61:146,3,0 1/1:44,0:44:95.22:444,95,0 1/1:30,0:30:68.61:363,69,0 1/1:23,0:23:54.33:276,54,0 1/1:19,0:19:42.95:199,43,0 1/1:23,0:23:53.83:261,54,0 1/1:42,1:43:68.39:471,68,0 1/1:27,0:27:68.98:311,69,0 1/1:22,0:22:23.20:244,23,0 1/1:28,0:28:68.27:346,68,0 1/1:17,0:17:45.06:209,45,0 1/1:22,0:22:25.87:203,26,0 11 67771432 . C A 10.13 . AC=2;AF=0.053;AN=38;BaseQRankSum=-1.285;DP=34;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0965;InbreedingCoeff=0.1719;MQ=58.30;MQ0=0;MQRankSum=1.051;QD=5.07;ReadPosRankSum=-0.506 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,36 ./. ./. ./. 0/0:3,0:3:6.02:0,6,85 0/1:0,1:1:1.76:31,3,0 ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,33 ./. ./. ./. 0/0:4,0:4:9.03:0,9,115 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,39 ./. 0/0:4,0:4:9.01:0,9,102 ./. 0/0:3,1:4:9.03:0,9,105 0/0:2,0:2:6.02:0,6,74 0/0:3,0:3:6.02:0,6,84 ./. 0/0:1,0:1:3.01:0,3,41 0/0:1,0:1:3.01:0,3,41 ./. 0/0:1,0:1:3.01:0,3,38 ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,39 ./. 0/0:1,0:1:3.01:0,3,38 ./. ./. 0/1:0,1:1:1.76:36,3,0 ./. 0/0:1,0:1:3.01:0,3,34 0/0:2,0:2:6.02:0,6,71 ./. 11 67810297 . C T 104.90 . AC=3;AF=0.039;AN=76;BaseQRankSum=-1.790;DP=113;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0956;InbreedingCoeff=-0.1444;MQ=58.38;MQ0=0;MQRankSum=0.882;QD=9.54;ReadPosRankSum=0.272 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,70 0/0:4,0:4:12.03:0,12,139 0/0:3,0:3:9.02:0,9,103 0/0:2,0:3:6.02:0,6,71 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:3.01:0,3,39 ./. 0/0:2,0:2:6.01:0,6,63 0/0:3,0:3:9.03:0,9,107 0/0:3,0:3:6.02:0,6,76 0/0:2,0:2:3.01:0,3,38 ./. 0/0:1,0:1:3.01:0,3,32 0/0:6,0:6:18.05:0,18,210 0/0:11,0:11:30.09:0,30,357 0/0:5,0:5:15.01:0,15,151 0/0:5,0:5:9.02:0,9,101 0/0:3,0:3:9.03:0,9,107 0/0:2,0:2:6.02:0,6,65 0/0:2,0:2:6.01:0,6,66 0/0:3,0:3:9.03:0,9,105 0/0:5,0:5:8.98:0,9,90 ./. 0/0:2,0:2:6.01:0,6,66 0/0:2,0:2:6.02:0,6,74 ./. 0/0:2,0:2:6.02:0,6,72 0/1:1,1:2:28.34:28,0,28 0/0:2,0:2:6.02:0,6,71 0/0:2,0:2:3.01:0,3,34 0/0:4,0:4:12.03:0,12,134 0/0:4,0:4:12.03:0,12,130 0/0:1,0:1:3.01:0,3,38 0/0:2,0:2:6.01:0,6,62 0/0:2,0:2:3.01:0,3,38 0/0:4,0:4:9.01:0,9,103 0/1:2,5:7:44.44:128,0,44 0/1:1,1:2:18.68:19,0,32 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.03:0,9,107 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:3.01:0,3,38 11 67810850 . T G 77.15 . AC=6;AF=0.100;AN=60;BaseQRankSum=-3.580;DP=86;Dels=0.00;FS=58.414;HRun=2;HaplotypeScore=0.2153;InbreedingCoeff=-0.0319;MQ=57.48;MQ0=0;MQRankSum=-0.605;QD=5.93;ReadPosRankSum=-4.536 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:36,3,0 ./. 0/1:1,1:2:28.33:28,0,31 0/0:3,1:4:8.24:0,8,81 0/1:1,2:3:24.58:25,0,29 0/0:1,0:1:3.01:0,3,36 ./. 0/0:2,0:2:6.02:0,6,75 0/0:2,0:2:6.02:0,6,75 0/0:1,0:1:3.01:0,3,37 0/1:3,2:5:49.94:50,0,92 ./. ./. 0/0:1,0:1:3.01:0,3,32 0/0:7,0:7:21.06:0,21,240 0/0:6,1:7:18.06:0,18,217 0/0:3,0:3:6.02:0,6,70 ./. ./. 0/0:2,0:2:6.02:0,6,74 0/0:4,0:4:9.03:0,9,108 ./. 0/0:1,0:1:3:0,3,27 0/0:1,1:2:3.01:0,3,37 ./. ./. 0/0:4,0:4:12.04:0,12,150 ./. 0/0:2,0:2:6.01:0,6,64 0/0:1,1:2:0.47:0,0,1 0/0:1,0:1:3.01:0,3,35 0/0:8,0:8:24.07:0,24,283 ./. 0/0:1,0:1:3.01:0,3,36 0/0:2,1:3:6.02:0,6,75 0/0:2,0:2:6.02:0,6,76 0/0:5,0:5:12.04:0,12,147 0/0:1,0:1:3.01:0,3,37 0/0:1,2:3:3.01:0,3,38 0/1:1,1:2:22.63:23,0,30 0/0:2,0:2:6.02:0,6,72 ./. 11 67815400 . C T 815.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.118;DP=2606;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.6876;InbreedingCoeff=-0.0244;MQ=59.07;MQ0=0;MQRankSum=0.571;QD=11.66;ReadPosRankSum=-0.857 GT:AD:DP:GQ:PL 0/1:19,19:38:99:466,0,553 0/1:16,16:32:99:412,0,376 0/0:36,0:36:90.26:0,90,1077 0/0:111,0:111:99:0,289,3593 0/0:85,0:85:99:0,229,2801 0/0:83,0:83:99:0,232,2847 0/0:69,0:69:99:0,181,2183 0/0:68,0:69:99:0,166,2083 0/0:47,0:47:99:0,129,1512 0/0:43,1:44:99:0,120,1386 0/0:49,0:49:99:0,126,1470 0/0:34,0:34:87.24:0,87,1009 0/0:35,0:35:87.24:0,87,1048 0/0:52,0:52:99:0,144,1670 0/0:160,0:160:99:0,406,4878 0/0:57,0:57:99:0,162,1880 0/0:42,0:42:99:0,120,1382 0/0:41,0:41:99:0,105,1260 0/0:102,0:103:99:0,265,3087 0/0:119,0:119:99:0,298,3605 0/0:115,0:115:99:0,292,3384 0/0:65,0:65:99:0,153,1836 0/0:133,0:133:99:0,325,4149 0/0:55,0:55:99:0,135,1701 0/0:60,0:60:99:0,159,1916 0/0:64,0:64:99:0,153,1968 0/0:34,0:34:96.26:0,96,1110 0/0:42,0:42:99:0,114,1325 0/0:53,0:53:99:0,132,1569 0/0:39,0:39:99:0,108,1286 0/0:50,0:50:99:0,135,1532 0/0:107,0:107:99:0,268,3188 0/0:59,0:59:99:0,147,1712 0/0:34,0:34:96.23:0,96,1081 0/0:42,0:42:99:0,117,1342 0/0:43,0:43:99:0,123,1430 0/0:105,0:105:99:0,250,2968 0/0:38,0:38:99:0,105,1214 0/0:42,0:42:99:0,114,1353 0/0:41,0:41:99:0,120,1412 0/0:34,0:34:90.27:0,90,1091 0/0:44,0:44:99:0,117,1405 11 67815412 . G T 2684.59 . AC=2;AF=0.024;AN=84;BaseQRankSum=-9.702;DP=2409;Dels=0.00;FS=3.360;HRun=1;HaplotypeScore=1.6254;InbreedingCoeff=-0.0244;MQ=59.05;MQ0=0;MQRankSum=0.182;QD=15.89;ReadPosRankSum=0.569 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,102,1292 0/0:28,0:28:75.23:0,75,932 0/0:34,0:34:96.29:0,96,1200 0/0:102,0:102:99:0,280,3676 0/0:69,0:69:99:0,190,2527 0/0:69,0:69:99:0,196,2573 0/0:58,0:59:99:0,153,2050 0/0:62,0:63:99:0,156,2073 0/0:45,1:46:95.97:0,96,1557 0/0:40,0:40:99:0,108,1353 0/0:47,0:47:99:0,117,1484 0/0:35,0:35:84.23:0,84,1043 0/0:35,0:35:93.30:0,93,1200 0/0:48,0:48:99:0,135,1681 0/0:153,0:154:99:0,382,4920 0/0:54,0:54:99:0,153,1929 0/0:40,0:40:99:0,108,1353 0/0:44,0:44:99:0,117,1465 0/0:91,0:91:99:0,223,2803 0/0:105,1:106:99:0,283,3560 0/1:42,67:109:99:1878,0,973 0/1:28,32:60:99:869,0,734 0/0:116,0:116:99:0,289,3924 0/0:50,0:50:99:0,126,1699 0/0:55,0:55:99:0,147,1937 0/0:56,0:56:99:0,141,1916 0/0:35,0:35:99:0,99,1212 0/0:39,0:39:99:0,108,1380 0/0:47,0:47:99:0,114,1468 0/0:35,0:35:99:0,105,1319 0/0:45,0:45:99:0,123,1563 0/0:97,0:97:99:0,238,3087 0/0:51,0:51:99:0,144,1780 0/0:39,0:39:99:0,111,1383 0/0:41,0:41:99:0,111,1393 0/0:43,0:43:99:0,117,1469 0/0:99,0:100:99:0,253,3166 0/0:40,0:40:99:0,105,1327 0/0:39,0:39:99:0,105,1330 0/0:42,0:42:99:0,117,1459 0/0:29,0:29:78.25:0,78,999 0/0:41,0:41:99:0,111,1406 11 67816654 . T G 68.48 . AC=3;AF=0.036;AN=84;BaseQRankSum=-19.923;DP=2855;Dels=0.00;FS=378.225;HRun=1;HaplotypeScore=2.1834;InbreedingCoeff=-0.0437;MQ=58.57;MQ0=0;MQRankSum=0.579;QD=0.40;ReadPosRankSum=-15.571 GT:AD:DP:GQ:PL 0/0:44,15:59:96.27:0,96,1157 0/0:63,7:70:99:0,156,1843 0/0:33,10:44:52.58:0,53,889 0/0:127,46:173:99:0,246,3680 0/0:107,31:138:99:0,139,3098 0/0:101,28:131:99:0,247,2953 0/0:67,23:90:86.23:0,86,1857 0/0:67,17:85:99:0,141,1694 0/0:45,13:58:88.68:0,89,1316 0/0:27,4:31:46.50:0,46,765 0/0:36,7:43:70.60:0,71,1093 0/0:27,9:37:4.26:0,4,693 0/0:31,10:41:29.92:0,30,844 0/0:37,13:51:48.89:0,49,1021 0/0:109,25:134:99:0,234,2995 0/0:36,9:45:69.61:0,70,1072 0/0:34,7:41:93.27:0,93,1094 0/0:32,6:38:84.24:0,84,995 0/0:57,16:73:13.16:0,13,1439 0/0:86,6:94:99:0,169,2497 0/1:49,15:65:22.51:23,0,1315 0/0:51,11:62:47.98:0,48,1548 0/0:138,36:174:99:0,262,3964 0/0:73,18:92:99:0,165,2210 0/0:97,28:125:99:0,225,2929 0/0:78,17:95:99:0,188,2163 0/0:20,6:26:57.14:0,57,637 0/0:26,8:34:72.20:0,72,859 0/0:39,7:46:82.61:0,83,1195 0/0:24,12:36:6.04:0,6,615 0/0:42,7:49:99:0,104,1203 0/0:70,15:85:99:0,117,1949 0/0:41,7:48:99:0,108,1252 0/0:45,8:53:99:0,117,1389 0/0:29,11:40:27.84:0,28,798 0/0:47,7:54:99:0,102,1457 0/1:44,23:68:92.42:92,0,1218 0/0:33,7:40:67.56:0,68,1019 0/0:37,14:51:71.62:0,72,1108 0/1:29,10:39:28.24:28,0,778 0/0:36,7:43:96.23:0,96,1086 0/0:43,11:54:99:0,117,1347 11 68174122 . G A 5105.50 . AC=10;AF=0.119;AN=84;BaseQRankSum=-6.967;DP=1479;Dels=0.00;FS=0.943;HRun=1;HaplotypeScore=0.9793;InbreedingCoeff=-0.1351;MQ=58.83;MQ0=0;MQRankSum=-0.082;QD=15.61;ReadPosRankSum=0.630 GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,99,1231 0/0:27,0:27:81.26:0,81,1030 0/1:7,15:22:99:484,0,190 0/0:38,0:39:99:0,111,1456 0/0:45,0:45:99:0,135,1779 0/0:38,0:38:99:0,111,1471 0/0:26,0:26:72.22:0,72,941 0/1:19,16:35:99:498,0,562 0/1:20,22:42:99:640,0,572 0/0:28,0:28:84.27:0,84,1067 0/1:14,13:27:99:397,0,419 0/0:25,0:25:72.20:0,72,878 0/0:26,0:26:75.23:0,75,937 0/0:28,0:28:81.24:0,81,996 0/0:102,0:102:99:0,286,3606 0/0:32,1:33:57.16:0,57,1107 0/0:26,0:26:75.23:0,75,934 0/0:28,0:28:84.24:0,84,1020 0/0:55,0:55:99:0,159,2007 0/0:58,0:58:99:0,168,2095 0/1:17,25:43:99:813,0,487 0/1:19,14:33:99:354,0,585 0/0:41,0:41:99:0,120,1584 0/0:36,0:36:99:0,105,1376 0/0:36,0:36:99:0,105,1382 0/0:28,0:29:81.27:0,81,1095 0/0:20,0:20:60.19:0,60,760 0/0:39,0:39:99:0,117,1448 0/0:22,0:22:66.18:0,66,792 0/1:18,15:33:99:442,0,577 0/1:18,16:34:99:497,0,542 0/0:49,0:49:99:0,135,1716 0/0:36,0:36:99:0,105,1291 0/0:30,0:30:90.29:0,90,1138 0/0:28,0:28:84.27:0,84,1072 0/0:37,0:37:99:0,105,1318 0/0:47,0:47:99:0,132,1649 0/0:31,0:31:87.26:0,87,1073 0/0:26,0:26:75.23:0,75,937 0/1:13,10:23:99:306,0,431 0/1:13,22:35:99:675,0,384 0/0:27,0:27:78.24:0,78,966 11 68174189 . G A 916.41 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.381;DP=1873;Dels=0.00;FS=1.299;HRun=0;HaplotypeScore=1.0862;InbreedingCoeff=-0.0244;MQ=58.85;MQ0=0;MQRankSum=0.719;QD=13.48;ReadPosRankSum=0.136 GT:AD:DP:GQ:PL 0/1:16,17:33:99:452,0,419 0/1:16,19:35:99:527,0,420 0/0:39,0:39:99:0,114,1274 0/0:69,0:69:99:0,193,2368 0/0:71,0:71:99:0,190,2358 0/0:43,0:44:99:0,123,1549 0/0:35,0:35:87.26:0,87,1071 0/0:47,0:47:99:0,132,1626 0/0:34,0:34:99:0,99,1144 0/0:45,0:45:99:0,123,1405 0/0:32,0:32:90.22:0,90,1000 0/0:27,0:27:78.22:0,78,899 0/0:18,0:18:48.12:0,48,553 0/0:30,0:30:87.22:0,87,1003 0/0:145,0:145:99:0,379,4330 0/0:50,0:50:99:0,144,1637 0/0:44,0:44:99:0,126,1419 0/0:43,0:43:99:0,111,1293 0/0:80,0:80:99:0,201,2312 0/0:68,0:68:99:0,187,2149 0/0:77,0:77:99:0,214,2481 0/0:60,0:60:99:0,159,1865 0/0:47,0:47:99:0,132,1664 0/0:36,0:36:93.28:0,93,1184 0/0:28,0:28:81.26:0,81,1033 0/0:36,0:36:96.29:0,96,1197 0/0:24,0:24:69.17:0,69,768 0/0:41,0:41:99:0,108,1260 0/0:50,0:50:99:0,129,1515 0/0:40,0:40:99:0,105,1208 0/0:37,0:37:99:0,111,1274 0/0:66,0:66:99:0,174,2064 0/0:40,0:40:99:0,111,1290 0/0:33,0:33:96.26:0,96,1085 0/0:24,0:24:66.20:0,66,800 0/0:42,0:42:99:0,126,1439 0/0:45,0:45:99:0,120,1336 0/0:35,0:35:93.26:0,93,1077 0/0:27,0:27:72.21:0,72,842 0/0:28,0:28:72.20:0,72,828 0/0:35,2:37:28.33:0,28,1053 0/0:31,0:31:84.23:0,84,960 11 68192630 . C T 51.66 . 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C T 382.86 . 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C T 3482.15 . 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C G 98.67 . 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C T 1309.06 . 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T C 2760.75 . 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G T 2406.27 . 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C T 4968.39 . 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T C 113439.20 . 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G A 2685.42 . 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T C 49230.10 . 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G T 24017.16 . 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A G 20392.08 . 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G A 48.02 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.020;DP=247;Dels=0.00;FS=2.062;HRun=0;HaplotypeScore=0.3445;InbreedingCoeff=-0.0671;MQ=58.31;MQ0=0;MQRankSum=0.986;QD=4.80;ReadPosRankSum=0.405 GT:AD:DP:GQ:PL 0/0:5,0:5:12.03:0,12,130 0/0:6,0:6:18.04:0,18,190 0/0:4,0:4:6.02:0,6,65 0/0:11,0:11:24.04:0,24,267 0/0:10,0:10:30.09:0,30,362 0/0:2,0:2:6.02:0,6,73 0/0:7,0:7:21.05:0,21,236 0/0:6,0:6:15.05:0,15,184 0/0:3,0:4:6.01:0,6,61 0/0:2,0:2:3.01:0,3,32 0/0:10,0:10:27.07:0,27,305 0/0:3,0:3:9.03:0,9,107 0/0:5,0:5:15.04:0,15,166 0/0:7,0:7:21.06:0,21,231 0/0:19,0:19:45.11:0,45,501 0/0:8,0:8:24.06:0,24,268 0/0:5,0:5:15.04:0,15,171 0/0:2,0:2:6.02:0,6,68 0/0:5,0:5:9.02:0,9,102 0/0:13,0:13:33.07:0,33,354 0/0:8,0:8:21.06:0,21,238 0/0:6,0:6:18.05:0,18,200 0/0:8,0:8:24.06:0,24,272 0/1:2,3:5:23.48:57,0,23 0/0:5,0:5:12.01:0,12,121 0/1:3,2:5:52.71:53,0,97 0/0:2,0:2:6.01:0,6,64 0/0:5,0:5:15.04:0,15,166 0/0:9,0:9:27.07:0,27,299 0/0:1,0:1:3.01:0,3,36 0/0:2,0:2:3.01:0,3,33 0/0:17,0:17:45.09:0,45,489 0/0:6,0:6:15.02:0,15,161 0/0:4,0:4:9.02:0,9,101 0/0:3,0:3:9.02:0,9,92 0/0:4,0:4:12.03:0,12,123 0/0:6,0:6:18.05:0,18,197 0/0:2,0:2:6.02:0,6,70 0/0:5,0:5:15.03:0,15,158 0/0:4,0:4:9.02:0,9,98 0/0:3,0:3:9.02:0,9,102 0/0:3,0:3:9.03:0,9,104 11 70034065 . C T 4.92 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.386;DP=250;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.3211;InbreedingCoeff=0.3883;MQ=57.90;MQ0=0;MQRankSum=1.585;QD=0.98;ReadPosRankSum=-0.052 GT:AD:DP:GQ:PL 0/0:5,1:6:12.04:0,12,141 0/0:7,0:7:21.04:0,21,227 0/0:5,0:5:12.03:0,12,138 0/0:8,0:8:15.04:0,15,163 0/0:11,0:11:27.07:0,27,319 0/0:5,0:5:9.03:0,9,119 0/0:7,0:7:21.06:0,21,254 0/0:3,0:3:9.03:0,9,112 0/0:4,0:4:9.02:0,9,93 0/0:4,0:4:12.03:0,12,132 0/0:6,0:6:15.02:0,15,157 0/0:3,0:3:6.02:0,6,69 0/0:3,0:3:6.01:0,6,66 0/0:14,0:14:36.10:0,36,413 0/0:19,0:19:51.14:0,51,583 0/0:3,0:3:9.02:0,9,101 0/0:4,0:4:9.02:0,9,109 0/0:8,0:8:21.06:0,21,231 0/0:7,0:7:18.05:0,18,213 0/0:12,0:12:30.09:0,30,359 0/0:9,0:9:27.08:0,27,313 0/0:9,0:9:24.06:0,24,260 0/0:11,0:11:33.10:0,33,390 0/0:3,0:3:9.02:0,9,102 0/0:4,0:5:6.02:0,6,72 0/0:4,0:4:12.04:0,12,152 0/0:3,0:3:9.03:0,9,107 0/0:3,0:3:9.02:0,9,101 0/0:7,0:7:21.05:0,21,227 0/1:2,1:3:1.76:35,3,0 0/1:1,1:2:1.76:35,3,0 0/0:9,0:9:18.02:0,18,196 0/0:6,0:6:15.04:0,15,179 0/0:4,0:4:9.02:0,9,99 0/0:5,0:5:12.03:0,12,136 0/0:6,0:6:15.04:0,15,164 0/0:4,0:4:12.04:0,12,148 0/0:4,0:4:9.02:0,9,99 0/0:1,0:1:3.01:0,3,38 0/0:4,0:4:9.01:0,9,91 0/0:4,0:4:12.03:0,12,137 0/0:5,0:5:12.03:0,12,124 11 70034096 . G A 1418.32 . AC=17;AF=0.207;AN=82;BaseQRankSum=2.564;DP=219;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1975;InbreedingCoeff=0.2856;MQ=57.70;MQ0=0;MQRankSum=0.087;QD=17.30;ReadPosRankSum=0.590 GT:AD:DP:GQ:PL 0/0:3,0:3:9.02:0,9,99 0/0:5,0:5:9.02:0,9,94 0/0:4,0:4:12.04:0,12,141 1/1:0,11:11:33.10:402,33,0 0/1:5,4:9:99:110,0,129 0/1:5,3:8:92.08:92,0,138 0/0:3,0:3:6.02:0,6,85 1/1:0,3:3:9.02:101,9,0 0/0:3,0:3:9.02:0,9,102 0/0:3,0:3:6.02:0,6,83 0/0:6,0:6:15.04:0,15,179 0/0:4,0:4:9.03:0,9,112 0/0:5,0:5:15.04:0,15,174 0/0:8,0:8:15.01:0,15,153 0/0:12,0:12:36.07:0,36,392 0/0:1,0:1:3:0,3,27 0/0:4,0:4:12.03:0,12,129 ./. 1/1:1,9:10:24.07:285,24,0 0/1:9,5:14:99:150,0,197 0/0:13,0:13:36.08:0,36,415 0/1:3,1:4:30.29:30,0,66 1/1:0,5:5:15.04:174,15,0 0/0:3,0:3:9.02:0,9,96 0/0:3,0:4:9.02:0,9,101 0/0:3,0:3:9.03:0,9,112 0/0:2,0:2:3.01:0,3,34 0/1:1,2:3:23.47:66,0,23 0/0:8,0:8:21.06:0,21,256 0/0:5,0:5:15.04:0,15,169 0/0:1,0:1:3.01:0,3,39 0/1:4,3:7:58.32:58,0,124 0/0:6,0:6:15.04:0,15,172 0/0:3,0:3:9.03:0,9,107 0/0:7,0:7:21.06:0,21,243 0/0:7,0:7:21.06:0,21,250 0/1:4,3:7:87.15:87,0,113 0/0:3,0:3:9.02:0,9,97 1/1:0,1:1:3.01:35,3,0 0/0:6,0:6:18.05:0,18,206 0/0:1,0:2:3.01:0,3,30 0/0:2,0:2:5.99:0,6,54 11 70049601 . G T 5.93 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.200;DP=316;Dels=0.00;FS=19.177;HRun=1;HaplotypeScore=0.2749;InbreedingCoeff=-0.0351;MQ=58.08;MQ0=0;MQRankSum=1.648;QD=0.85;ReadPosRankSum=-1.771 GT:AD:DP:GQ:PL 0/0:10,0:10:27.06:0,27,285 0/0:6,0:6:18.05:0,18,194 0/0:5,0:5:15.04:0,15,165 0/0:17,0:17:51.13:0,51,572 0/0:10,0:10:30.08:0,30,331 0/0:9,0:9:27.07:0,27,301 0/0:7,0:7:21.06:0,21,244 0/0:7,0:8:21.04:0,21,228 0/0:7,0:7:18.04:0,18,188 0/0:4,0:4:12.03:0,12,128 0/0:8,0:8:24.04:0,24,243 0/0:5,0:5:15.02:0,15,148 0/0:7,0:7:18.02:0,18,175 0/0:8,0:8:21.04:0,21,222 0/0:11,0:11:30.08:0,30,334 0/0:6,0:6:15.04:0,15,171 0/0:3,0:3:6.02:0,6,76 0/0:3,0:3:6.02:0,6,65 0/0:8,0:10:9.02:0,9,96 0/0:9,0:9:21.03:0,21,207 0/0:7,0:7:18.04:0,18,186 0/0:5,0:5:15.04:0,15,161 0/0:9,0:9:21.04:0,21,225 0/0:7,0:7:15.04:0,15,173 0/0:17,0:17:48.09:0,48,537 0/0:12,0:12:27.08:0,27,317 0/0:9,0:9:27.07:0,27,291 0/0:6,0:6:18.05:0,18,198 0/0:1,0:1:3.01:0,3,33 0/0:9,0:9:24.06:0,24,274 0/0:1,0:1:3.01:0,3,31 0/0:12,0:12:30.05:0,30,300 0/0:8,0:8:24.06:0,24,261 0/0:9,0:9:27.07:0,27,291 0/0:12,0:12:36.08:0,36,381 0/0:7,0:7:21.05:0,21,228 0/1:5,2:7:50.59:51,0,89 0/0:7,0:7:21.04:0,21,217 0/0:5,0:5:15:0,15,146 0/0:2,0:2:6.02:0,6,64 0/0:8,0:8:21.04:0,21,230 0/0:3,0:3:9.01:0,9,90 11 70049643 . A T 273.60 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.477;DP=598;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.5554;InbreedingCoeff=-0.0090;MQ=58.80;MQ0=0;MQRankSum=0.164;QD=14.40;ReadPosRankSum=0.954 GT:AD:DP:GQ:PL 0/0:12,0:12:36.11:0,36,419 0/0:8,0:8:24.07:0,24,278 0/0:7,0:7:21.06:0,21,248 0/0:34,0:34:99:0,102,1135 0/0:28,0:28:84.24:0,84,973 0/0:21,0:21:63.18:0,63,747 0/0:19,0:19:57.14:0,57,657 0/0:23,0:23:66.20:0,66,778 0/0:7,0:7:21.05:0,21,234 0/0:7,0:7:21.06:0,21,246 0/0:9,0:9:27.07:0,27,302 0/0:9,0:9:27.08:0,27,312 0/0:7,0:7:21.06:0,21,249 0/0:9,0:9:27.06:0,27,308 0/0:25,0:25:75.21:0,75,843 0/0:16,0:16:45.13:0,45,522 0/0:7,0:7:21.06:0,21,244 0/0:8,0:8:24.07:0,24,284 0/0:16,0:16:48.12:0,48,544 0/0:13,0:13:39.10:0,39,453 0/0:14,0:14:42.13:0,42,505 0/0:8,0:8:24.07:0,24,282 0/0:39,0:39:99:0,117,1335 0/0:23,0:23:69.20:0,69,812 0/0:30,0:30:87.26:0,87,1032 0/0:24,0:24:69.20:0,69,809 0/1:1,6:7:17.21:154,0,17 0/0:11,0:11:30.09:0,30,350 0/1:6,6:12:99:182,0,179 0/0:19,0:19:57.13:0,57,645 0/0:4,0:4:12.04:0,12,143 0/0:16,0:16:42.11:0,42,496 0/0:15,0:15:39.11:0,39,457 0/0:14,0:14:42.12:0,42,487 0/0:7,0:7:21.06:0,21,246 0/0:10,0:10:27.08:0,27,321 0/0:19,0:19:54.14:0,54,619 0/0:8,0:8:21.06:0,21,251 0/0:9,0:9:27.06:0,27,292 0/0:8,0:9:24.07:0,24,287 0/0:7,0:7:18.05:0,18,218 0/0:8,0:8:24.07:0,24,276 11 70185325 . C T 4273.02 . AC=7;AF=0.083;AN=84;BaseQRankSum=2.901;DP=2635;Dels=0.00;FS=1.292;HRun=0;HaplotypeScore=2.2675;InbreedingCoeff=-0.0909;MQ=59.39;MQ0=0;MQRankSum=-0.125;QD=13.07;ReadPosRankSum=1.362 GT:AD:DP:GQ:PL 0/0:32,0:33:81.23:0,81,955 0/0:48,0:48:99:0,129,1464 0/0:48,0:48:99:0,132,1508 0/0:137,0:137:99:0,334,4224 0/0:117,0:119:99:0,295,3749 0/0:101,0:101:99:0,265,3261 0/0:97,1:98:99:0,218,3116 0/0:77,0:78:99:0,199,2498 0/0:37,0:37:99:0,102,1201 0/0:35,0:35:96.25:0,96,1090 0/0:41,0:41:96.27:0,96,1138 0/0:53,0:53:99:0,135,1614 0/1:16,19:35:99:476,0,407 0/0:49,0:49:99:0,135,1551 0/0:202,0:202:99:0,502,5867 0/0:40,0:40:99:0,114,1256 0/0:53,1:54:99:0,138,1578 0/1:16,29:45:99:804,0,377 0/0:73,0:73:99:0,183,2042 0/1:33,27:61:99:723,0,862 0/0:66,0:66:99:0,156,1811 0/1:24,12:36:99:277,0,648 0/0:154,0:154:99:0,397,4987 0/0:61,0:61:99:0,156,1942 0/0:98,0:98:99:0,265,3241 0/0:66,0:66:99:0,159,2033 0/0:43,0:43:99:0,108,1261 0/0:51,1:52:99:0,135,1572 0/0:30,0:30:84.24:0,84,969 0/1:23,24:47:99:597,0,564 0/1:17,20:38:99:544,0,457 0/1:30,34:65:99:851,0,682 0/0:37,0:37:96.27:0,96,1121 0/0:62,0:62:99:0,168,1897 0/0:53,0:53:99:0,138,1604 0/0:51,0:51:99:0,126,1503 0/0:67,0:68:99:0,168,1888 0/0:47,0:47:99:0,117,1361 0/0:39,0:40:93.26:0,93,1094 0/0:38,0:38:99:0,108,1199 0/0:41,0:41:99:0,114,1282 0/0:55,0:55:99:0,147,1653 11 71504475 . T C 8644.93 . 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A T 120281.70 . 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C T 52.17 . 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C G 61.02 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.380;DP=1860;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.4400;InbreedingCoeff=-0.0288;MQ=58.64;MQ0=0;MQRankSum=-9.894;QD=0.86;ReadPosRankSum=3.165 GT:AD:DP:GQ:PL 0/0:27,0:27:69.22:0,69,881 0/1:31,6:37:94.94:95,0,864 0/0:38,1:39:80.66:0,81,1302 0/0:52,0:52:99:0,123,1667 0/0:43,3:46:64.14:0,64,1488 0/0:34,0:34:96.29:0,96,1201 0/0:40,0:40:99:0,105,1410 0/0:44,2:46:54.92:0,55,1452 0/0:41,0:41:96.30:0,96,1233 0/0:37,3:40:20.34:0,20,1107 0/0:32,0:32:75.23:0,75,972 0/0:32,0:32:75.23:0,75,958 0/0:34,2:36:57.64:0,58,1039 0/0:38,0:39:96.29:0,96,1225 0/0:133,0:133:99:0,307,3949 0/0:41,0:41:99:0,108,1365 0/0:35,0:35:93.29:0,93,1163 0/1:30,4:34:28.11:28,0,910 0/0:72,0:72:99:0,184,2233 0/0:84,0:84:99:0,217,2701 0/0:66,0:66:99:0,165,2055 0/0:48,0:48:99:0,135,1650 0/0:38,0:39:99:0,102,1362 0/0:28,2:30:36.58:0,37,809 0/0:31,1:32:54.59:0,55,992 0/0:27,0:27:69.22:0,69,943 0/0:38,0:38:87.24:0,87,1070 0/0:36,0:36:99:0,99,1238 0/0:26,0:26:75.24:0,75,943 0/0:48,0:48:99:0,129,1607 0/0:31,0:31:81.25:0,81,1030 0/0:75,0:75:99:0,190,2444 0/0:52,0:52:99:0,126,1634 0/0:25,0:25:63.18:0,63,761 0/0:35,0:35:87.28:0,87,1135 0/0:45,0:45:99:0,129,1613 0/0:77,0:77:99:0,187,2303 0/0:35,0:35:84.26:0,84,1072 0/0:30,0:30:78.25:0,78,1006 0/0:43,4:47:5.09:0,5,1330 0/0:30,3:33:10.34:0,10,960 0/0:41,4:45:16.67:0,17,1211 11 71941212 . A G 11908.28 . AC=22;AF=0.262;AN=84;BaseQRankSum=8.575;DP=1526;Dels=0.00;FS=6.687;HRun=0;HaplotypeScore=0.8682;InbreedingCoeff=-0.1085;MQ=59.02;MQ0=0;MQRankSum=1.126;QD=16.11;ReadPosRankSum=1.391 GT:AD:DP:GQ:PL 0/0:34,0:34:93.28:0,93,1117 0/1:17,14:31:99:393,0,492 0/1:17,15:32:99:406,0,461 0/0:42,0:42:99:0,108,1327 0/1:21,25:46:99:772,0,595 0/0:29,0:29:81.23:0,81,986 0/0:26,0:26:75.23:0,75,917 0/1:14,19:33:99:614,0,412 0/0:29,0:29:81.20:0,81,919 0/1:10,15:25:99:413,0,285 0/0:30,0:30:87.26:0,87,1041 0/0:29,0:29:78.23:0,78,947 0/0:18,0:18:54.15:0,54,623 0/1:21,15:37:99:399,0,603 0/1:57,46:103:99:1274,0,1506 1/1:0,40:40:99:1349,111,0 0/0:20,0:20:60.17:0,60,705 0/1:10,17:27:99:510,0,261 0/0:59,0:60:99:0,156,1865 0/0:74,0:74:99:0,193,2323 0/0:57,0:57:99:0,147,1794 0/0:34,0:34:93.26:0,93,1103 0/1:23,21:44:99:651,0,675 1/1:1,26:27:36.98:892,37,0 0/1:16,10:26:99:283,0,457 0/1:11,11:22:99:321,0,280 0/0:28,0:28:81.25:0,81,976 0/0:43,0:43:99:0,114,1354 0/0:30,0:30:87.25:0,87,1030 0/0:31,0:31:87.25:0,87,1039 0/0:33,0:33:90.27:0,90,1102 0/0:45,0:45:99:0,111,1373 0/0:37,0:37:99:0,99,1206 0/1:23,7:30:99:178,0,660 0/0:23,0:23:66.20:0,66,800 0/1:21,18:39:99:509,0,489 0/1:13,46:59:99:1265,0,273 0/1:20,16:36:99:411,0,601 0/0:35,0:35:90.27:0,90,1089 0/1:12,16:28:99:479,0,341 0/1:13,10:23:99:308,0,355 0/1:12,19:31:99:481,0,349 11 71941254 . G A 362.35 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.573;DP=940;Dels=0.00;FS=1.282;HRun=0;HaplotypeScore=0.8237;InbreedingCoeff=-0.0121;MQ=58.79;MQ0=0;MQRankSum=1.071;QD=15.75;ReadPosRankSum=-1.900 GT:AD:DP:GQ:PL 0/0:15,0:15:45.14:0,45,547 0/0:24,0:24:72.22:0,72,888 0/0:16,1:17:45.14:0,45,556 0/0:28,0:28:81.25:0,81,1048 0/0:29,0:29:81.25:0,81,1062 0/0:19,0:19:54.17:0,54,714 0/0:17,0:17:51.17:0,51,685 0/0:22,0:22:63.21:0,63,837 0/0:16,0:16:48.14:0,48,586 0/0:15,0:15:42.10:0,42,489 0/0:23,0:23:66.21:0,66,839 0/0:20,0:20:54.17:0,54,678 0/0:14,0:14:42.13:0,42,525 0/0:27,0:27:81.25:0,81,1007 0/0:57,0:57:99:0,156,1935 0/0:26,0:26:75.23:0,75,936 0/0:14,0:14:39.12:0,39,478 0/0:19,0:19:54.17:0,54,677 0/0:38,0:38:99:0,108,1313 0/0:32,0:32:90.28:0,90,1138 0/0:27,0:27:72.19:0,72,865 0/0:25,0:25:69.21:0,69,861 0/1:9,14:23:99:409,0,283 0/0:15,0:15:42.13:0,42,550 0/0:21,0:21:54.18:0,54,731 0/0:15,0:15:45.15:0,45,598 0/0:14,0:14:39.12:0,39,482 0/0:30,0:30:78.23:0,78,969 0/0:19,0:19:57.18:0,57,709 0/0:13,0:13:36.11:0,36,448 0/0:20,0:20:54.17:0,54,680 0/0:31,0:31:87.24:0,87,1070 0/0:24,0:24:72.21:0,72,877 0/0:23,0:23:63.20:0,63,815 0/0:18,0:18:51.15:0,51,628 0/0:24,0:24:66.21:0,66,843 0/0:34,0:34:93.28:0,93,1143 0/0:19,0:19:54.16:0,54,662 0/0:22,0:22:63.19:0,63,781 0/0:14,0:14:39.08:0,39,444 0/0:17,0:17:51.14:0,51,621 0/0:19,0:20:54.14:0,54,650 11 71949163 . G T 11.76 . AC=5;AF=0.060;AN=84;BaseQRankSum=-5.600;DP=553;Dels=0.00;FS=71.513;HRun=2;HaplotypeScore=0.3721;InbreedingCoeff=-0.0894;MQ=57.68;MQ0=0;MQRankSum=-0.464;QD=0.29;ReadPosRankSum=-3.394 GT:AD:DP:GQ:PL 0/0:8,0:8:24.03:0,24,275 0/0:3,2:5:9.01:0,9,97 0/0:8,1:9:21.07:0,21,266 0/0:30,3:33:87.28:0,87,1137 0/0:32,6:38:61.72:0,62,1130 0/0:14,1:15:39.13:0,39,512 0/0:11,3:14:33.11:0,33,448 0/0:13,2:15:33.09:0,33,411 0/1:4,3:7:19.32:19,0,120 0/1:4,2:6:20.22:20,0,121 0/0:7,2:9:15.05:0,15,182 0/0:7,0:7:21.07:0,21,258 0/1:6,5:11:35.13:35,0,166 0/0:5,1:6:12.03:0,12,143 0/0:26,4:30:72.22:0,72,902 0/1:6,2:8:12.37:12,0,208 0/0:8,2:10:24.07:0,24,294 0/0:8,2:10:24.08:0,24,298 0/0:8,0:8:21.06:0,21,257 0/0:14,11:25:42.13:0,42,523 0/0:17,2:19:12.01:0,12,518 0/0:12,1:13:30.07:0,30,342 0/0:17,4:21:48.12:0,48,600 0/0:9,0:9:27.08:0,27,339 0/0:20,6:26:20.74:0,21,626 0/0:14,2:16:39.12:0,39,513 0/1:7,2:9:11.18:11,0,230 0/0:18,0:18:48.14:0,48,588 0/0:6,0:6:12.04:0,12,155 0/0:7,4:11:21.07:0,21,265 0/0:9,2:11:1.92:3,0,271 0/0:11,2:13:30.09:0,30,370 0/0:10,2:12:30.09:0,30,369 0/0:5,2:7:12.04:0,12,147 0/0:6,6:12:18.05:0,18,219 0/0:9,4:13:27.07:0,27,328 0/0:14,3:17:36.11:0,36,446 0/0:10,1:11:27.08:0,27,341 0/0:7,2:9:21.06:0,21,258 0/0:6,2:8:18.06:0,18,223 0/0:7,2:9:0.39:10,0,244 0/0:8,1:9:21.07:0,21,267 11 71954893 . G A 79.39 . AC=3;AF=0.043;AN=70;BaseQRankSum=1.162;DP=115;Dels=0.00;FS=2.354;HRun=1;HaplotypeScore=0.0541;InbreedingCoeff=0.0293;MQ=58.62;MQ0=0;MQRankSum=-0.646;QD=7.94;ReadPosRankSum=1.535 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.02:0,9,100 0/0:2,0:2:6.02:0,6,72 0/0:5,0:5:15.04:0,15,163 0/0:4,0:4:9.03:0,9,110 0/0:2,0:2:6.02:0,6,74 0/0:4,0:4:9.02:0,9,99 0/1:2,2:4:61.89:62,0,62 0/0:2,0:2:6.01:0,6,63 0/1:0,1:1:1.76:37,3,0 0/0:1,0:1:3.01:0,3,32 0/0:3,0:3:6.02:0,6,77 ./. 0/0:3,0:3:9.03:0,9,109 0/0:5,0:5:15.04:0,15,157 0/0:6,0:6:15.04:0,15,175 0/0:1,0:1:3.01:0,3,39 0/1:3,2:5:53.49:53,0,82 0/0:7,0:7:15.05:0,15,187 0/0:3,0:3:9.02:0,9,104 ./. 0/0:3,0:3:9.02:0,9,100 0/0:7,0:7:21.06:0,21,243 0/0:2,0:2:6.02:0,6,73 0/0:6,0:6:18.06:0,18,222 0/0:2,0:2:3.01:0,3,37 0/0:2,0:2:6.02:0,6,64 0/0:2,0:2:6.02:0,6,66 0/0:2,0:2:6.01:0,6,60 0/0:2,0:2:6.01:0,6,61 ./. 0/0:6,0:6:18.05:0,18,206 0/0:1,0:1:3.01:0,3,32 0/0:1,0:1:3.01:0,3,32 ./. ./. 0/0:7,0:7:21.03:0,21,216 0/0:4,0:4:9.02:0,9,107 ./. 0/0:2,0:2:6.02:0,6,65 0/0:2,0:2:6.02:0,6,67 ./. 11 71954908 . C G 6.72 . AC=1;AF=0.016;AN=62;BaseQRankSum=-1.136;DP=115;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.3055;InbreedingCoeff=-0.1015;MQ=58.13;MQ0=0;MQRankSum=-0.260;QD=1.34;ReadPosRankSum=-0.315 GT:AD:DP:GQ:PL ./. 0/0:2,0:2:3.01:0,3,31 0/0:2,0:2:6.01:0,6,62 0/0:7,0:7:18.05:0,18,211 0/0:3,1:4:6:0,6,63 0/0:3,0:3:9.03:0,9,108 0/0:5,0:5:12.03:0,12,141 0/0:5,0:5:15.05:0,15,194 ./. 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,34 0/0:2,0:2:6.02:0,6,68 0/0:1,0:1:2.99:0,3,23 0/0:4,0:4:9.02:0,9,99 0/0:6,1:7:15.04:0,15,162 0/0:6,0:6:12.03:0,12,137 ./. 0/0:4,0:4:12.03:0,12,128 0/1:1,2:3:12.67:49,0,13 0/0:3,0:3:9.01:0,9,84 0/0:1,0:1:3:0,3,26 0/0:2,0:2:6.01:0,6,57 0/0:9,0:9:18.05:0,18,211 0/0:2,0:2:3.01:0,3,37 0/0:6,0:6:9.02:0,9,94 ./. ./. 0/0:1,0:1:3.01:0,3,32 0/0:1,0:2:3.01:0,3,32 ./.:.:2:.:0,0,0 ./. 0/0:5,0:5:12.03:0,12,139 0/0:2,0:2:3.01:0,3,39 ./. 0/0:1,0:1:3:0,3,28 ./. 0/0:6,1:7:9:0,9,95 0/0:5,0:5:9.03:0,9,116 ./. 0/0:2,0:2:6.02:0,6,76 ./. 0/0:1,0:1:3:0,3,27 11 72019622 . A C 149.11 . AC=6;AF=0.071;AN=84;BaseQRankSum=-17.270;DP=2442;Dels=0.00;FS=886.546;HRun=2;HaplotypeScore=1.1060;InbreedingCoeff=-0.0833;MQ=59.01;MQ0=0;MQRankSum=-0.261;QD=0.55;ReadPosRankSum=-11.103 GT:AD:DP:GQ:PL 0/0:40,16:56:99:0,120,1390 0/1:33,26:59:54.94:55,0,882 0/0:19,14:33:57.16:0,57,659 0/0:55,46:101:51.99:0,52,1631 0/0:59,31:90:45.81:0,46,1752 0/0:34,21:55:5.83:0,6,1118 0/0:53,32:85:54.53:0,55,1585 0/1:26,26:52:33.72:34,0,783 0/0:45,24:69:42.59:0,43,1358 0/0:43,20:63:87.74:0,88,1273 0/1:25,13:38:45.13:45,0,754 0/0:37,29:66:75.38:0,75,1152 0/0:29,13:42:84.21:0,84,943 0/0:30,16:46:58.72:0,59,999 0/0:132,58:190:99:0,307,4187 0/0:24,14:38:69.20:0,69,803 0/0:39,17:56:57.12:0,57,1220 0/1:26,17:43:67.67:68,0,796 0/0:39,23:62:55.04:0,55,1204 0/0:49,25:74:99:0,110,1557 0/0:42,19:61:62.36:0,62,1317 0/0:27,21:48:68.70:0,69,857 0/0:56,50:106:36.74:0,37,1566 0/0:33,21:54:61.52:0,62,1026 0/0:31,31:62:56.57:0,57,946 0/0:34,21:55:94.83:0,95,1107 0/1:21,13:34:39.16:39,0,651 0/0:29,17:46:28.99:0,29,908 0/0:32,12:44:58.54:0,59,923 0/0:36,19:55:99:0,102,1182 0/0:25,10:37:39.08:0,39,798 0/0:56,27:83:99:0,115,1712 0/0:24,9:33:72.20:0,72,827 0/0:32,15:47:62.85:0,63,994 0/0:24,12:36:23.83:0,24,754 0/0:29,14:44:6.14:0,6,907 0/0:39,9:48:52.56:0,53,1270 0/0:37,17:54:71.99:0,72,1117 0/0:24,18:42:9.06:0,9,778 0/0:43,14:57:99:0,126,1465 0/0:23,11:34:36.95:0,37,749 0/1:29,15:44:12.15:12,0,859 11 72040784 . T C 7361.91 . AC=8;AF=0.095;AN=84;BaseQRankSum=11.057;DP=2485;Dels=0.00;FS=3.475;HRun=1;HaplotypeScore=1.2169;InbreedingCoeff=-0.1053;MQ=59.25;MQ0=0;MQRankSum=0.683;QD=13.03;ReadPosRankSum=1.089 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,114,1418 0/0:53,0:53:99:0,138,1739 0/0:35,0:35:96.31:0,96,1219 0/0:119,0:119:99:0,280,3677 0/1:54,40:94:99:1163,0,1494 0/0:69,0:69:99:0,181,2384 0/0:58,0:58:99:0,132,1762 0/0:71,0:71:99:0,178,2353 0/0:49,0:50:99:0,144,1763 0/0:44,0:44:99:0,123,1529 0/0:41,0:41:99:0,111,1379 0/0:43,0:43:99:0,129,1565 0/0:46,0:46:99:0,126,1609 0/0:47,0:47:99:0,120,1505 0/0:186,1:187:99:0,469,5973 0/0:47,0:47:99:0,120,1498 0/0:46,1:48:99:0,123,1547 0/0:36,0:36:99:0,102,1253 0/1:47,32:79:99:813,0,1320 0/1:43,34:78:99:923,0,1201 0/0:62,1:63:99:0,160,2041 0/0:59,0:59:99:0,153,1949 0/1:54,47:101:99:1444,0,1499 0/1:28,34:62:99:1017,0,838 0/1:30,37:67:99:1116,0,786 0/0:55,0:55:99:0,135,1786 0/0:30,0:30:81.25:0,81,1015 0/0:62,0:62:99:0,156,1971 0/0:43,1:44:99:0,123,1539 0/0:53,0:53:99:0,141,1795 0/0:31,0:31:87.27:0,87,1089 0/0:76,0:76:99:0,181,2329 0/0:63,0:63:99:0,162,2040 0/0:50,0:50:99:0,135,1713 0/0:40,0:40:99:0,102,1311 0/0:69,0:69:99:0,193,2399 0/0:75,1:76:99:0,196,2451 0/0:43,0:43:99:0,114,1435 0/0:36,0:36:99:0,105,1291 0/1:34,20:55:99:550,0,999 0/1:17,12:29:99:335,0,549 0/0:37,0:37:99:0,105,1315 11 72290629 . G A 11605.39 . AC=31;AF=0.369;AN=84;BaseQRankSum=0.022;DP=1216;Dels=0.00;FS=7.683;HRun=1;HaplotypeScore=0.7851;InbreedingCoeff=0.3352;MQ=59.36;MQ0=0;MQRankSum=0.352;QD=20.01;ReadPosRankSum=0.005 GT:AD:DP:GQ:PL 0/0:26,0:26:54.17:0,54,710 0/0:25,0:25:69.20:0,69,835 0/0:23,0:23:54.15:0,54,659 0/0:78,0:78:99:0,187,2305 0/1:40,39:79:99:991,0,1188 0/0:48,0:48:99:0,108,1336 0/0:33,0:33:78.22:0,78,956 0/0:66,0:67:99:0,162,2036 1/1:0,23:23:48.14:618,48,0 1/1:0,26:26:63.19:773,63,0 0/1:8,7:15:99:158,0,207 0/1:11,6:17:99:169,0,222 0/0:19,0:19:45.13:0,45,569 1/1:0,32:32:84.24:1020,84,0 1/1:0,69:69:99:1975,159,0 1/1:0,24:24:66.18:806,66,0 1/1:0,17:17:42.13:530,42,0 0/1:5,5:10:99:128,0,119 0/0:25,0:25:69.20:0,69,819 0/0:29,0:29:69.19:0,69,840 0/1:9,16:25:99:419,0,231 1/1:0,19:19:48.14:588,48,0 0/0:87,0:87:99:0,199,2506 0/1:18,16:34:99:453,0,410 0/1:12,16:28:99:425,0,295 0/0:33,0:33:75.24:0,75,1009 0/0:12,1:13:33.10:0,33,386 0/1:10,9:19:99:240,0,234 0/0:21,0:21:54.16:0,54,653 0/1:8,10:18:99:268,0,193 0/1:10,6:16:99:158,0,244 0/0:31,0:31:78.18:0,78,925 0/0:22,0:22:57.16:0,57,672 0/0:14,0:14:39.11:0,39,473 0/0:15,0:15:39.10:0,39,444 0/0:16,0:17:42.12:0,42,503 1/1:0,21:21:57.16:702,57,0 0/1:17,14:31:99:317,0,461 1/1:0,18:18:45.13:550,45,0 0/1:11,9:20:99:216,0,243 0/1:15,4:19:99:102,0,328 0/0:10,0:10:27.08:0,27,317 11 72295734 . C T 681.93 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.613;DP=1270;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8211;InbreedingCoeff=-0.0244;MQ=59.17;MQ0=0;MQRankSum=0.778;QD=9.09;ReadPosRankSum=-0.335 GT:AD:DP:GQ:PL 0/0:24,0:24:66.15:0,66,733 0/0:23,0:23:48.13:0,48,587 0/0:27,0:27:72.18:0,72,805 0/0:58,0:58:99:0,141,1772 0/0:62,0:62:99:0,159,1995 0/0:39,0:40:96.27:0,96,1183 0/0:41,1:42:72.81:0,73,1215 0/0:40,0:40:99:0,105,1287 0/0:16,0:16:45.12:0,45,515 0/0:22,0:22:54.12:0,54,587 0/0:21,0:21:54.13:0,54,629 0/0:19,0:19:48.12:0,48,540 0/0:23,0:23:63.15:0,63,711 0/0:25,0:25:54.12:0,54,607 0/0:61,0:62:99:0,156,1745 0/0:25,0:25:66.17:0,66,750 0/0:24,0:24:69.17:0,69,769 0/0:19,0:19:54.15:0,54,614 0/0:30,0:31:75.19:0,75,849 0/0:44,0:44:93.27:0,93,1150 0/0:38,0:38:99:0,105,1173 0/0:22,0:22:57.16:0,57,665 0/0:95,2:97:99:0,188,2800 0/1:18,15:33:99:434,0,502 0/1:28,14:42:99:310,0,766 0/0:45,0:45:99:0,111,1405 0/0:22,0:22:63.17:0,63,709 0/0:31,0:31:84.23:0,84,979 0/0:17,0:17:39.07:0,39,456 0/0:20,0:20:51.11:0,51,572 0/0:17,0:18:48.14:0,48,556 0/0:28,0:29:69.19:0,69,818 0/0:33,0:33:87.22:0,87,975 0/0:19,0:19:54.13:0,54,598 0/0:19,0:19:51.11:0,51,552 0/0:18,0:18:51.14:0,51,581 0/0:23,0:23:66.17:0,66,743 0/0:23,0:23:66.18:0,66,748 0/0:16,0:16:42.12:0,42,493 0/0:22,0:22:54.13:0,54,590 0/0:14,0:14:39.07:0,39,401 0/0:22,0:22:66.18:0,66,744 11 72301503 . G A 736.83 . AC=9;AF=0.107;AN=84;BaseQRankSum=-2.687;DP=335;Dels=0.00;FS=6.109;HRun=0;HaplotypeScore=0.5232;InbreedingCoeff=0.3438;MQ=59.32;MQ0=0;MQRankSum=1.516;QD=11.51;ReadPosRankSum=1.400 GT:AD:DP:GQ:PL 0/0:2,0:2:3.01:0,3,33 0/0:2,0:2:6.01:0,6,64 0/0:6,0:6:15.05:0,15,181 0/0:22,0:22:57.18:0,57,728 0/1:10,4:14:72.71:73,0,233 0/0:19,0:19:39.11:0,39,518 0/0:6,0:6:18.06:0,18,240 0/0:11,0:11:30.08:0,30,365 0/1:5,4:9:99:116,0,132 0/1:0,3:3:0.97:70,6,0 0/0:6,0:6:15.03:0,15,163 0/1:2,2:4:28.77:29,0,69 0/0:1,0:1:3:0,3,29 1/1:0,7:7:15.05:191,15,0 0/1:12,7:19:99:167,0,299 1/1:0,8:8:18.06:230,18,0 0/0:5,0:5:9.03:0,9,128 0/0:5,0:5:15.04:0,15,171 0/0:1,0:1:3:0,3,26 0/0:11,0:11:24.06:0,24,291 0/0:12,0:12:27.08:0,27,333 0/0:7,0:7:18.04:0,18,213 0/0:21,0:21:48.12:0,48,598 0/0:12,0:12:27.09:0,27,366 0/0:10,0:10:24.07:0,24,313 0/0:9,0:10:18.06:0,18,238 0/0:6,0:6:12.04:0,12,159 0/0:1,0:1:3.01:0,3,39 0/0:5,0:5:15.05:0,15,184 0/0:12,0:12:24.07:0,24,305 0/0:10,0:10:24.07:0,24,287 0/0:7,0:7:15.05:0,15,191 0/0:7,0:7:15.05:0,15,193 0/0:1,0:1:3.01:0,3,39 0/0:8,0:8:18.05:0,18,219 0/0:9,0:9:21.06:0,21,250 0/0:12,0:12:30.08:0,30,358 0/0:6,0:6:12.01:0,12,123 0/0:5,0:5:9.01:0,9,105 0/0:6,0:6:15.02:0,15,173 0/0:3,0:3:9.02:0,9,95 0/0:4,0:4:9.03:0,9,117 11 72308651 . G A 500.22 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.974;DP=922;Dels=0.00;FS=1.055;HRun=1;HaplotypeScore=0.5669;InbreedingCoeff=-0.0245;MQ=56.88;MQ0=0;MQRankSum=1.451;QD=13.90;ReadPosRankSum=0.721 GT:AD:DP:GQ:PL 0/0:16,0:16:45.14:0,45,574 0/0:11,0:11:33.10:0,33,403 0/0:12,0:12:36.11:0,36,457 0/0:47,0:47:99:0,129,1645 0/0:32,0:33:96.30:0,96,1247 0/0:26,0:26:78.25:0,78,1016 0/0:25,0:26:66.21:0,66,890 0/0:29,0:29:81.26:0,81,1064 0/0:18,0:18:51.16:0,51,631 0/0:10,0:10:30.08:0,30,357 0/0:17,0:17:48.14:0,48,597 0/0:13,0:13:39.11:0,39,473 0/0:14,0:14:39.11:0,39,475 0/0:11,0:11:33.10:0,33,397 0/0:81,0:81:99:0,208,2597 0/0:24,0:24:66.20:0,66,835 0/0:11,0:11:27.06:0,27,329 0/0:15,0:15:42.13:0,42,528 0/0:27,0:27:69.20:0,69,860 0/0:23,0:23:66.20:0,66,816 0/1:8,8:16:99:242,0,221 0/1:9,11:20:99:321,0,211 0/0:45,0:45:99:0,126,1664 0/0:30,0:31:78.24:0,78,1033 0/0:22,0:22:63.19:0,63,814 0/0:15,0:15:42.14:0,42,571 0/0:12,0:12:27.09:0,27,347 0/0:19,0:19:51.16:0,51,652 0/0:13,0:13:33.11:0,33,434 0/0:17,0:17:42.13:0,42,535 0/0:24,0:24:69.21:0,69,870 0/0:32,0:32:81.24:0,81,1042 0/0:13,0:13:39.11:0,39,473 0/0:11,0:11:30.10:0,30,389 0/0:25,0:26:66.21:0,66,835 0/0:16,0:16:45.14:0,45,571 0/0:44,0:44:99:0,114,1428 0/0:18,0:18:45.12:0,45,559 0/0:15,0:15:39.12:0,39,485 0/0:14,0:14:36.11:0,36,461 0/0:13,0:13:39.13:0,39,499 0/0:22,0:22:63.20:0,63,787 11 72407643 . G C 99.44 . AC=8;AF=0.095;AN=84;BaseQRankSum=-15.972;DP=1553;Dels=0.00;FS=468.753;HRun=1;HaplotypeScore=2.0205;InbreedingCoeff=-0.1428;MQ=58.82;MQ0=0;MQRankSum=-0.374;QD=0.56;ReadPosRankSum=-10.928 GT:AD:DP:GQ:PL 0/0:15,1:16:9.44:0,9,375 0/0:17,4:21:21.46:0,21,511 0/1:14,6:20:21.07:21,0,338 0/0:91,26:117:48.30:0,48,2492 0/0:60,25:85:29.17:0,29,1795 0/0:57,14:71:88.22:0,88,1766 0/0:50,10:60:79:0,79,1528 0/0:48,14:62:92.29:0,92,1403 0/0:32,6:38:49.52:0,50,860 0/0:14,0:14:39.11:0,39,474 0/0:15,5:20:39.10:0,39,464 0/1:15,7:22:12.08:12,0,386 0/0:19,3:22:2.94:0,0,571 0/1:11,6:17:17.25:17,0,346 0/0:80,7:87:99:0,150,2157 0/0:22,6:28:54.01:0,54,611 0/0:21,5:26:16.42:0,16,495 0/0:18,3:21:48.10:0,48,584 0/0:23,10:33:14.01:0,14,723 0/0:38,7:45:62.57:0,63,1014 0/0:28,12:40:63.16:0,63,730 0/0:24,8:32:51.15:0,51,633 0/0:86,36:122:91.56:0,92,2576 0/1:35,13:48:34.03:34,0,996 0/0:44,17:61:65.31:0,65,1262 0/0:41,6:47:24.65:0,25,1067 0/1:9,4:13:35.14:35,0,207 0/0:16,6:22:2.67:0,3,354 0/0:10,5:15:24.07:0,24,294 0/0:18,3:21:16.60:0,17,548 0/0:12,4:16:30.09:0,30,373 0/0:43,14:57:2.05:2,0,1159 0/0:22,9:31:63.15:0,63,757 0/0:22,3:25:31.50:0,32,663 0/1:15,4:19:16.97:17,0,420 0/0:16,2:18:45.12:0,45,535 0/0:21,8:29:20.72:0,21,570 0/0:14,2:16:7.44:0,7,366 0/1:11,8:19:56.72:57,0,278 0/0:19,8:27:1.17:5,0,529 0/1:17,4:21:19.55:20,0,467 0/0:24,4:28:51.16:0,51,649 11 72407643 . G GC 365.57 . AC=14;AF=0.167;AN=84;BaseQRankSum=0.815;DP=1572;FS=892.812;HRun=1;HaplotypeScore=117.2459;InbreedingCoeff=-0.2284;MQ=58.73;MQ0=0;MQRankSum=0.931;QD=0.63;ReadPosRankSum=-17.469 GT:AD:DP:GQ:PL 0/0:18,0:18:13.49:0,13,391 0/0:21,0:21:23.06:0,23,492 0/1:23,0:23:3.61:4,0,436 0/0:117,0:116:1.89:3,0,2354 0/1:86,0:86:22.60:23,0,1818 0/0:72,0:71:71.60:0,72,1754 0/0:60,0:58:52.35:0,52,1414 0/0:64,0:64:47.31:0,47,1520 0/0:38,0:38:58.18:0,58,967 0/1:13,1:16:9.49:9,0,382 0/0:20,0:20:28.88:0,29,469 0/1:23,0:23:26.78:27,0,431 0/0:21,0:21:8.43:0,8,564 0/1:18,0:18:29.87:30,0,348 0/1:67,24:90:99:199,0,1790 0/0:27,0:27:21.86:0,22,639 0/0:24,0:24:19.14:0,19,536 0/0:22,0:22:40.15:0,40,588 0/0:36,0:36:6.10:0,6,624 0/0:42,0:42:97.54:0,98,1196 0/0:41,0:41:44.98:0,45,749 0/0:30,0:30:42.39:0,42,691 0/1:122,0:122:49.23:49,0,2229 0/1:50,0:50:27.89:28,0,984 0/0:62,0:58:33.71:0,34,1274 0/0:46,0:46:73.44:0,73,1160 0/1:13,0:13:23.18:23,0,253 0/0:23,0:23:2.70:1,0,407 0/0:15,0:15:16.93:0,17,277 0/0:21,0:21:19.98:0,20,555 0/0:16,0:16:21.02:0,21,365 0/1:55,0:55:24.41:24,0,1324 0/0:34,0:34:49.75:0,50,749 0/0:25,0:25:38.79:0,39,692 0/1:20,0:20:10.72:11,0,398 0/0:19,0:19:42.13:0,42,537 0/0:30,0:30:0.34:0,0,581 0/0:17,0:17:14.69:0,15,395 0/1:20,0:20:43.13:43,0,345 0/1:27,0:27:24.78:25,0,487 0/1:19,0:19:22.56:23,0,437 0/0:28,0:28:36.33:0,36,691 11 72408055 . G C 6037.09 . AC=21;AF=0.250;AN=84;BaseQRankSum=-3.756;DP=901;Dels=0.00;FS=1.307;HRun=0;HaplotypeScore=0.7445;InbreedingCoeff=-0.0795;MQ=58.06;MQ0=0;MQRankSum=1.493;QD=17.15;ReadPosRankSum=-0.275 GT:AD:DP:GQ:PL 0/1:5,5:10:99:147,0,126 0/0:12,0:12:36.11:0,36,454 0/1:8,5:13:99:136,0,256 1/1:0,35:35:99:1340,105,0 0/1:20,16:36:99:532,0,678 0/0:29,0:29:69.22:0,69,912 0/0:28,0:28:81.26:0,81,1086 0/0:29,0:29:75.25:0,75,1034 0/1:12,12:24:99:377,0,332 0/1:5,7:12:99:177,0,150 0/1:4,7:11:99:226,0,120 0/1:4,6:10:99:178,0,123 0/0:8,0:8:24.08:0,24,303 0/1:5,6:11:99:120,0,157 0/0:55,0:55:99:0,156,1958 0/0:27,0:27:78.24:0,78,972 0/0:13,0:13:33.10:0,33,408 0/1:6,7:13:99:186,0,195 0/0:30,0:30:75.21:0,75,922 0/0:39,0:39:99:0,111,1406 0/0:36,0:36:99:0,102,1280 0/0:26,0:26:75.24:0,75,953 0/1:20,19:39:99:482,0,658 0/0:22,0:22:66.21:0,66,898 0/1:11,15:26:99:482,0,326 0/0:30,0:30:90.29:0,90,1193 0/1:5,4:9:88.83:89,0,163 0/0:19,0:19:54.17:0,54,693 0/1:5,3:8:90.87:91,0,168 0/0:16,0:16:48.15:0,48,590 0/0:14,0:15:33.10:0,33,431 0/1:19,8:27:99:217,0,632 0/1:10,9:19:99:243,0,294 0/0:18,0:18:54.16:0,54,670 0/0:20,0:20:57.17:0,57,703 0/0:12,0:12:36.12:0,36,458 0/0:35,0:35:99:0,102,1273 0/0:16,0:16:48.15:0,48,611 0/0:14,0:14:39.12:0,39,491 1/1:0,16:16:48.15:584,48,0 0/1:8,7:15:99:221,0,217 0/1:10,8:18:99:209,0,319 11 72408657 . C T 41522.06 . AC=34;AF=0.405;AN=84;BaseQRankSum=-33.818;DP=4328;DS;Dels=0.00;FS=11.563;HRun=0;HaplotypeScore=2.9447;InbreedingCoeff=0.1106;MQ=59.23;MQ0=0;MQRankSum=-1.415;QD=17.34;ReadPosRankSum=-0.556 GT:AD:DP:GQ:PL 0/1:29,26:55:99:730,0,781 0/1:25,23:48:99:622,0,693 0/0:72,0:72:99:0,187,2416 0/0:248,1:249:99:0,653,8811 0/0:235,0:235:99:0,617,8428 0/1:104,53:158:99:1314,0,3250 1/1:0,108:108:99:3485,283,0 0/1:85,52:137:99:1137,0,2394 0/1:32,38:70:99:992,0,913 0/1:35,31:66:99:838,0,981 0/1:35,28:63:99:749,0,1021 0/0:66,0:66:99:0,178,2250 0/1:23,32:55:99:876,0,598 0/0:55,0:55:99:0,141,1840 0/0:249,0:250:99:0,623,8044 0/0:75,0:75:99:0,205,2585 0/1:39,32:71:99:923,0,1074 0/0:69,0:69:99:0,175,2234 0/0:170,0:170:99:0,424,5425 0/1:85,81:166:99:2170,0,2389 0/1:68,87:155:99:2391,0,1941 0/1:49,49:98:99:1287,0,1299 0/0:239,0:239:99:0,635,8676 1/1:0,100:100:99:3026,247,0 0/1:90,67:157:99:1689,0,2609 1/1:1,95:96:99:2919,202,0 0/0:46,0:46:99:0,126,1596 0/1:38,29:67:99:788,0,1118 0/0:57,0:57:99:0,141,1863 1/1:0,66:66:99:1972,165,0 1/1:0,50:50:99:1653,138,0 0/1:88,84:173:99:2102,0,2327 0/1:56,44:101:99:1090,0,1680 1/1:0,73:73:99:2504,208,0 1/1:1,60:61:99:1950,132,0 1/1:0,73:73:99:2338,193,0 0/0:175,0:176:99:0,445,5667 0/0:54,0:54:99:0,153,1931 0/1:32,36:68:99:1005,0,847 0/0:58,0:58:99:0,165,2044 0/1:26,34:60:99:971,0,789 0/0:62,0:62:99:0,172,2164 11 72415329 . G A 3521.30 . AC=13;AF=0.155;AN=84;BaseQRankSum=0.670;DP=686;Dels=0.00;FS=11.385;HRun=0;HaplotypeScore=0.6259;InbreedingCoeff=0.1752;MQ=58.05;MQ0=0;MQRankSum=1.129;QD=17.09;ReadPosRankSum=0.447 GT:AD:DP:GQ:PL 0/0:10,0:11:27.07:0,27,312 0/0:14,0:14:39.11:0,39,443 0/0:14,0:14:39.07:0,39,426 0/0:37,0:38:99:0,102,1253 0/1:13,10:23:99:286,0,411 0/0:20,0:20:54.17:0,54,667 0/0:21,0:21:57.15:0,57,685 0/0:16,0:16:42.13:0,42,535 0/1:3,7:10:54.08:197,0,54 0/1:3,5:8:67.32:142,0,67 0/0:4,0:5:12.02:0,12,127 0/0:10,0:10:27.06:0,27,300 0/0:5,0:5:15.04:0,15,169 0/0:10,0:10:24.06:0,24,269 0/1:15,21:36:99:563,0,366 1/1:0,12:12:33.08:359,33,0 0/0:9,0:10:27.06:0,27,281 0/0:12,0:12:36.10:0,36,411 0/0:21,0:21:57.16:0,57,648 0/0:23,0:23:66.17:0,66,741 0/1:8,9:17:99:251,0,187 0/1:5,10:15:95.43:263,0,95 0/1:18,15:33:99:403,0,501 0/0:19,0:19:51.14:0,51,616 0/0:34,0:34:93.28:0,93,1140 0/0:21,0:21:48.14:0,48,603 0/0:14,0:14:30.08:0,30,350 0/0:14,0:14:42.10:0,42,452 0/0:11,0:11:33.08:0,33,374 0/0:9,0:9:21.06:0,21,243 0/0:17,0:17:45.12:0,45,510 0/0:23,0:23:63.17:0,63,706 0/0:23,0:23:66.19:0,66,766 0/0:12,0:12:36.10:0,36,406 0/0:13,0:13:39.09:0,39,434 0/0:12,0:12:36.10:0,36,405 1/1:0,17:17:51.15:608,51,0 0/1:11,9:20:99:189,0,324 0/1:6,9:15:99:260,0,113 0/0:7,0:7:15.04:0,15,177 0/0:8,0:8:24.07:0,24,270 0/0:13,0:13:39.07:0,39,424 11 72528866 . A G 108.73 . AC=8;AF=0.095;AN=84;BaseQRankSum=-20.251;DP=1261;Dels=0.00;FS=1161.887;HRun=2;HaplotypeScore=0.6147;InbreedingCoeff=-0.1536;MQ=58.52;MQ0=0;MQRankSum=0.062;QD=0.54;ReadPosRankSum=-17.167 GT:AD:DP:GQ:PL 0/1:11,6:17:41.95:42,0,302 0/0:14,5:19:10.58:0,11,459 0/0:12,5:17:33.09:0,33,393 0/0:50,23:73:66.42:0,66,1535 0/1:52,20:72:19.63:20,0,1632 0/0:29,3:32:59.57:0,60,993 0/0:37,8:45:52.04:0,52,1315 0/0:31,13:44:43:0,43,1033 0/0:18,6:24:0.07:0,0,619 0/0:14,4:18:15.51:0,16,489 0/0:14,6:20:1.54:4,0,452 0/1:8,3:11:30.85:31,0,274 0/0:17,1:18:24.55:0,25,609 0/0:14,5:19:15.92:0,16,456 0/0:50,20:70:99:0,104,1627 0/0:12,5:17:11.45:0,11,423 0/0:13,2:15:39.12:0,39,480 0/0:18,4:22:3.89:0,4,577 0/0:29,6:35:9.52:0,10,906 0/0:34,9:43:97.99:0,98,1145 0/0:30,5:35:82.51:0,83,1043 0/0:22,7:29:9.92:0,10,694 0/0:66,23:90:99:0,101,2060 0/0:37,20:57:59.22:0,59,1243 0/0:38,14:53:82.55:0,83,1308 0/0:35,14:49:44.17:0,44,1138 0/0:16,4:20:41.62:0,42,502 0/1:17,6:23:30.05:30,0,514 0/0:20,4:24:1.64:3,0,579 0/0:8,1:9:24.08:0,24,304 0/1:13,6:19:38.42:38,0,440 0/0:22,2:24:61.99:0,62,733 0/0:17,5:22:25.77:0,26,547 0/1:16,5:22:40.88:41,0,448 0/0:17,4:21:0.22:0,0,557 0/1:17,3:20:6.10:6,0,482 0/0:28,5:33:56.18:0,56,949 0/1:14,5:19:10.20:10,0,426 0/0:14,3:17:12.28:0,12,415 0/0:14,3:17:42.13:0,42,530 0/0:10,4:14:2.51:0,3,339 0/0:9,4:13:24.96:0,25,295 11 72700082 . T G 262.32 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.800;DP=765;Dels=0.00;FS=2.819;HRun=0;HaplotypeScore=0.2056;InbreedingCoeff=-0.0198;MQ=59.28;MQ0=0;MQRankSum=1.636;QD=13.81;ReadPosRankSum=-1.047 GT:AD:DP:GQ:PL 0/0:15,0:15:45.14:0,45,543 0/0:10,0:10:27.08:0,27,322 0/0:15,0:15:45.11:0,45,521 0/0:29,0:29:84.25:0,84,995 0/0:18,0:18:54.16:0,54,626 0/0:23,0:23:63.20:0,63,798 0/0:16,0:16:45.14:0,45,567 0/0:14,0:14:42.12:0,42,491 0/0:14,0:14:39.11:0,39,460 0/0:10,0:10:27.08:0,27,330 0/0:9,0:9:24.07:0,24,282 0/0:23,0:23:66.20:0,66,786 0/0:17,0:17:51.15:0,51,601 0/0:16,0:16:45.14:0,45,539 0/0:39,0:39:99:0,102,1237 0/0:9,0:9:27.08:0,27,320 0/0:12,0:12:36.11:0,36,432 0/0:13,0:13:39.11:0,39,457 0/0:43,0:43:99:0,111,1371 0/0:29,0:29:81.24:0,81,980 0/0:34,0:34:84.24:0,84,1036 0/0:17,0:17:48.13:0,48,562 0/0:14,0:14:42.13:0,42,507 0/0:19,0:19:54.16:0,54,650 0/0:12,0:12:36.11:0,36,430 0/0:15,0:15:42.12:0,42,510 0/0:14,0:14:42.11:0,42,489 0/0:15,0:15:42.13:0,42,508 0/0:13,0:13:39.12:0,39,469 0/0:19,0:19:54.16:0,54,646 0/0:14,0:14:42.13:0,42,507 0/0:22,0:22:57.15:0,57,692 0/0:26,0:26:72.22:0,72,876 0/0:13,0:13:39.12:0,39,472 0/0:14,0:14:39.12:0,39,469 0/0:20,0:20:57.16:0,57,675 0/0:34,0:34:93.28:0,93,1117 0/0:19,0:19:54.16:0,54,650 0/0:17,0:17:45.14:0,45,552 0/1:1,4:5:23.21:110,0,23 0/0:21,0:21:60.18:0,60,723 0/1:7,7:14:99:215,0,201 11 73068346 . C T 193.56 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.967;DP=961;Dels=0.00;FS=3.493;HRun=0;HaplotypeScore=2.1975;InbreedingCoeff=-0.0121;MQ=57.70;MQ0=0;MQRankSum=0.710;QD=12.10;ReadPosRankSum=2.325 GT:AD:DP:GQ:PL 0/0:20,0:20:57.14:0,57,633 0/0:16,0:16:45.12:0,45,506 0/0:17,0:17:45.12:0,45,508 0/0:24,0:24:66.19:0,66,788 0/0:33,0:33:90.24:0,90,1075 0/0:19,0:19:57.17:0,57,676 0/0:17,0:17:45.14:0,45,549 0/0:18,0:18:48.15:0,48,587 0/0:16,0:16:39.10:0,39,444 0/0:15,0:15:42.11:0,42,469 0/0:14,0:14:39.10:0,39,448 0/0:23,0:23:60.15:0,60,678 0/0:17,0:17:33.10:0,33,418 0/0:18,0:18:51.13:0,51,570 0/0:70,0:71:99:0,177,2027 0/0:14,0:14:42.12:0,42,485 0/0:13,0:13:39.07:0,39,422 0/0:14,1:15:42.11:0,42,469 0/0:32,0:32:66.18:0,66,746 0/0:40,0:40:99:0,102,1175 0/0:32,0:32:78.20:0,78,872 0/0:31,0:31:75.19:0,75,865 0/0:44,0:44:99:0,120,1440 0/0:16,0:16:39.12:0,39,477 0/0:29,0:29:81.24:0,81,976 0/0:23,0:23:63.20:0,63,779 0/0:13,0:13:39.10:0,39,426 0/0:25,0:25:66.16:0,66,723 0/0:11,0:11:27.07:0,27,315 0/0:16,0:16:42.11:0,42,471 0/0:18,0:19:54.14:0,54,606 0/0:37,0:37:99:0,99,1110 0/0:28,0:28:78.20:0,78,872 0/0:17,0:17:45.12:0,45,507 0/0:16,0:16:42.11:0,42,478 0/0:16,0:16:39.10:0,39,462 0/0:24,0:24:54.15:0,54,624 0/0:23,0:23:63.14:0,63,710 0/0:20,0:20:54.14:0,54,614 0/0:27,0:27:66.14:0,66,747 0/1:8,8:16:99:240,0,208 0/0:26,0:26:78.22:0,78,893 11 73106148 . A T 776.07 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.655;DP=3173;Dels=0.00;FS=4.567;HRun=2;HaplotypeScore=2.4767;InbreedingCoeff=-0.0120;MQ=59.17;MQ0=2;MQRankSum=0.385;QD=13.15;ReadPosRankSum=-0.871 GT:AD:DP:GQ:PL 0/0:62,0:63:99:0,168,2022 0/0:45,0:45:99:0,120,1482 0/0:53,0:53:99:0,132,1625 0/0:142,0:143:99:0,385,4770 0/0:125,0:125:99:0,325,4039 0/0:97,0:97:99:0,241,3082 0/0:92,0:92:99:0,241,3053 0/0:67,0:67:99:0,181,2242 0/0:47,0:47:99:0,126,1522 0/0:61,0:61:99:0,150,1868 0/0:45,0:45:99:0,126,1506 0/0:47,0:47:99:0,123,1506 0/0:47,0:47:99:0,117,1408 0/0:72,0:72:99:0,190,2280 0/0:196,0:197:99:0,472,5779 0/0:58,0:58:99:0,156,1870 0/0:48,0:48:99:0,132,1607 0/0:59,0:60:99:0,153,1868 0/0:112,0:112:99:0,280,3500 0/0:120,0:120:99:0,328,3982 0/0:101,0:101:99:0,262,3152 0/0:104,0:104:99:0,265,3255 0/0:128,0:128:99:0,334,4176 0/0:73,0:73:99:0,181,2273 0/0:86,0:86:99:0,232,2906 0/0:69,0:70:99:0,178,2235 0/0:39,0:39:99:0,105,1288 0/0:41,0:41:99:0,108,1295 0/0:47,0:47:99:0,123,1478 0/0:55,0:55:99:0,150,1805 0/0:47,0:47:99:0,126,1531 0/0:101,0:101:99:0,253,3171 0/0:93,0:93:99:0,244,2938 0/0:74,0:74:99:0,172,2136 0/1:29,30:59:99:822,0,731 0/0:61,0:61:99:0,159,1943 0/0:123,0:123:99:0,304,3724 0/0:47,0:47:99:0,120,1479 0/0:63,0:63:99:0,178,2126 0/0:53,0:53:99:0,138,1646 0/0:49,0:49:99:0,126,1542 0/0:60,0:60:99:0,172,2035 11 73106163 . A C 1458.10 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.259;DP=3454;Dels=0.00;FS=2.417;HRun=1;HaplotypeScore=2.5465;InbreedingCoeff=-0.0244;MQ=59.13;MQ0=1;MQRankSum=-0.147;QD=14.02;ReadPosRankSum=0.605 GT:AD:DP:GQ:PL 0/0:71,0:71:99:0,175,2110 0/1:24,21:46:99:577,0,564 0/1:22,36:58:99:944,0,572 0/0:165,0:165:99:0,406,4884 0/0:129,0:129:99:0,334,4012 0/0:103,0:103:99:0,262,3245 0/0:96,0:97:99:0,259,3114 0/0:74,0:74:99:0,187,2281 0/0:60,0:60:99:0,159,1872 0/0:71,1:72:99:0,175,2125 0/0:48,0:48:99:0,138,1601 0/0:48,0:49:99:0,129,1536 0/0:46,0:47:99:0,123,1433 0/0:79,0:79:99:0,208,2459 0/0:210,0:217:99:0,511,6039 0/0:66,0:66:99:0,177,2069 0/0:48,0:49:99:0,129,1574 0/0:55,1:57:99:0,147,1730 0/0:125,0:127:99:0,313,3796 0/0:122,1:125:99:0,322,3785 0/0:106,0:111:99:0,271,3278 0/0:112,0:112:99:0,277,3324 0/0:151,0:152:99:0,373,4509 0/0:84,0:84:99:0,220,2587 0/0:98,1:100:99:0,253,3043 0/0:80,0:80:99:0,202,2374 0/0:43,0:43:99:0,108,1282 0/0:50,0:50:99:0,147,1699 0/0:49,0:49:99:0,129,1551 0/0:63,0:63:99:0,168,2000 0/0:50,1:52:99:0,120,1642 0/0:115,0:115:99:0,286,3455 0/0:93,1:94:99:0,247,2899 0/0:73,0:73:99:0,193,2323 0/0:61,0:61:99:0,156,1857 0/0:66,0:66:99:0,181,2179 0/0:127,0:129:99:0,325,3973 0/0:53,0:53:99:0,135,1632 0/0:64,0:66:99:0,174,2037 0/0:56,1:57:99:0,144,1718 0/0:51,0:52:99:0,135,1597 0/0:53,0:53:99:0,138,1674 11 73106186 . G A 2458.47 . AC=4;AF=0.048;AN=84;BaseQRankSum=-11.477;DP=3499;Dels=0.00;FS=4.240;HRun=2;HaplotypeScore=1.8257;InbreedingCoeff=0.4750;MQ=59.01;MQ0=1;MQRankSum=2.264;QD=16.28;ReadPosRankSum=-2.701 GT:AD:DP:GQ:PL 0/0:71,0:71:99:0,178,2287 0/0:52,0:52:99:0,141,1799 0/1:30,22:52:99:565,0,931 0/0:168,0:168:99:0,445,5970 0/0:141,1:142:99:0,333,4941 0/0:109,0:109:99:0,274,3721 0/0:108,0:108:99:0,292,3868 0/0:77,0:78:99:0,205,2712 0/0:66,0:67:99:0,187,2335 0/0:67,0:67:99:0,190,2368 0/0:49,0:49:99:0,141,1739 0/1:32,21:53:99:543,0,1001 1/1:0,46:46:99:1443,123,0 0/0:78,0:78:99:0,223,2735 0/0:207,0:207:99:0,563,7121 0/0:58,0:58:99:0,165,2078 0/0:48,0:48:99:0,135,1710 0/0:60,0:60:99:0,163,2042 0/0:105,0:105:99:0,307,3855 0/0:142,0:143:99:0,370,4707 0/0:106,0:106:99:0,292,3639 0/0:109,0:111:99:0,280,3573 0/0:158,0:158:99:0,424,5718 0/0:82,0:82:99:0,223,2967 0/0:105,0:107:99:0,280,3779 0/0:86,0:86:99:0,217,2937 0/0:42,0:42:99:0,114,1446 0/0:52,0:52:99:0,144,1808 0/0:56,0:56:99:0,156,1969 0/0:68,0:68:99:0,187,2323 0/0:54,0:54:99:0,153,1920 0/0:107,0:107:99:0,292,3663 0/0:95,0:95:99:0,256,3202 0/0:72,0:72:99:0,202,2531 0/0:62,0:62:99:0,159,2026 0/0:70,0:70:99:0,193,2430 0/0:128,0:128:99:0,340,4291 0/0:57,0:58:99:0,153,1949 0/0:57,0:57:99:0,163,2065 0/0:51,0:51:99:0,138,1736 0/0:49,0:49:99:0,132,1660 0/0:67,0:67:99:0,184,2302 11 73106237 . A C 3479.65 . 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G A 82.94 . 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C T 40637.29 . 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G A 30784.23 . 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A C 16.68 . 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G A 14554.22 . 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C T 2795.97 . AC=26;AF=0.310;AN=84;BaseQRankSum=1.496;DP=491;Dels=0.00;FS=12.790;HRun=0;HaplotypeScore=0.7975;InbreedingCoeff=0.1064;MQ=58.44;MQ0=0;MQRankSum=3.089;QD=10.71;ReadPosRankSum=0.832 GT:AD:DP:GQ:PL 0/1:5,2:7:38.06:38,0,172 0/0:11,0:11:24.06:0,24,286 0/1:3,4:7:86.77:91,0,87 0/1:34,12:48:99:196,0,875 0/0:37,0:37:84.26:0,84,1077 0/0:14,0:14:33.08:0,33,387 0/1:6,2:8:17.20:17,0,168 0/1:9,8:17:99:236,0,220 1/1:0,4:4:12.03:140,12,0 1/1:0,5:6:12.03:137,12,0 0/1:4,2:6:48.17:60,0,48 0/0:11,0:11:30.05:0,30,315 0/0:6,0:6:18.03:0,18,194 0/0:6,0:6:15.04:0,15,165 0/0:28,0:28:63.17:0,63,723 0/0:7,0:7:18.05:0,18,198 0/1:4,2:6:48.67:49,0,114 0/1:4,4:8:99:108,0,116 0/1:3,3:6:45.78:96,0,46 0/0:13,0:13:36.09:0,36,407 0/0:19,0:19:42.09:0,42,468 0/0:4,0:4:9.01:0,9,92 0/1:25,15:41:99:372,0,656 1/1:0,10:10:27.09:338,27,0 0/1:17,6:23:99:161,0,399 0/1:8,4:14:99:110,0,202 1/1:0,3:3:9.03:104,9,0 0/1:0,2:2:0.97:67,6,0 0/0:4,0:4:6.02:0,6,71 0/0:5,0:5:9.03:0,9,108 0/0:5,0:5:15.04:0,15,164 0/0:22,0:22:45.09:0,45,528 0/1:6,4:10:85.96:86,0,146 0/0:4,0:4:6.01:0,6,63 0/0:3,0:3:3.01:0,3,33 0/0:8,0:9:24.06:0,24,266 0/1:9,10:19:99:242,0,227 0/0:7,0:7:18.05:0,18,203 1/1:0,5:5:15.04:169,15,0 0/1:4,7:11:91.84:184,0,92 0/0:10,0:10:27.06:0,27,287 0/0:5,0:5:12.04:0,12,154 11 74419379 . G A 139.46 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.307;DP=494;Dels=0.00;FS=16.301;HRun=0;HaplotypeScore=0.8129;InbreedingCoeff=-0.0416;MQ=58.44;MQ0=0;MQRankSum=1.410;QD=7.75;ReadPosRankSum=-0.251 GT:AD:DP:GQ:PL 0/1:2,5:7:42.03:164,0,42 0/1:9,2:11:37.12:37,0,200 0/0:7,0:7:18.05:0,18,222 0/0:47,0:47:99:0,108,1380 0/0:37,0:37:87.27:0,87,1122 0/0:14,0:14:39.10:0,39,469 0/0:8,0:8:24.06:0,24,298 0/0:19,0:19:48.14:0,48,593 0/0:4,0:4:12.04:0,12,145 0/0:5,0:5:12.04:0,12,147 0/0:6,0:6:18.04:0,18,203 0/0:11,0:11:27.08:0,27,313 0/0:6,0:6:18.05:0,18,204 0/0:7,0:7:21.04:0,21,228 0/0:28,0:28:72.16:0,72,815 0/0:7,0:7:18.04:0,18,201 0/0:6,0:6:18.05:0,18,204 0/0:7,0:7:21.05:0,21,242 0/0:5,0:5:15.05:0,15,190 0/0:12,0:12:30.09:0,30,367 0/0:18,0:18:45.12:0,45,508 0/0:4,0:4:9.03:0,9,116 0/0:43,0:43:99:0,114,1438 0/0:10,0:10:30.08:0,30,394 0/0:24,0:24:57.18:0,57,747 0/0:16,0:16:36.07:0,36,456 0/0:3,0:3:9.03:0,9,113 0/0:2,0:2:6.02:0,6,76 0/0:4,0:4:9.02:0,9,92 0/0:5,0:5:15.04:0,15,177 0/0:5,0:5:15.03:0,15,162 0/0:23,0:23:51.11:0,51,581 0/0:11,0:11:30.09:0,30,380 0/0:4,0:4:6.02:0,6,74 0/0:3,0:3:6.02:0,6,73 0/0:9,0:9:24.06:0,24,266 0/0:19,0:19:45.12:0,45,537 0/0:6,0:6:18.05:0,18,200 0/0:5,0:5:15.05:0,15,192 0/0:12,0:12:33.09:0,33,382 0/0:9,0:9:24.03:0,24,255 0/0:5,0:5:12.03:0,12,146 11 74648036 . G T 255.03 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.422;DP=1859;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.6420;InbreedingCoeff=-0.0120;MQ=59.37;MQ0=0;MQRankSum=-0.194;QD=11.09;ReadPosRankSum=0.149 GT:AD:DP:GQ:PL 0/1:12,11:23:99:301,0,313 0/0:35,0:35:99:0,102,1158 0/0:37,0:37:99:0,105,1200 0/0:49,0:49:99:0,132,1678 0/0:53,0:53:99:0,150,1871 0/0:48,0:48:99:0,129,1656 0/0:37,0:37:99:0,102,1281 0/0:34,0:34:90.29:0,90,1157 0/0:46,0:46:99:0,120,1453 0/0:25,0:25:69.20:0,69,811 0/0:40,0:40:99:0,108,1248 0/0:21,0:21:60.17:0,60,696 0/0:36,0:36:99:0,99,1159 0/0:33,0:33:90.25:0,90,1063 0/0:141,0:141:99:0,364,4264 0/0:24,0:24:69.19:0,69,792 0/0:45,0:45:99:0,117,1352 0/0:30,0:30:84.23:0,84,952 0/0:75,0:75:99:0,202,2335 0/0:62,0:63:99:0,162,1896 0/0:85,1:86:99:0,205,2705 0/0:40,0:40:99:0,108,1242 0/0:54,0:54:99:0,144,1823 0/0:41,0:41:93.30:0,93,1226 0/0:48,0:48:99:0,117,1518 0/0:49,1:50:99:0,104,1721 0/0:20,0:20:57.14:0,57,632 0/0:27,0:27:81.22:0,81,907 0/0:27,0:27:72.16:0,72,810 0/0:31,0:31:90.23:0,90,996 0/0:31,0:31:93.26:0,93,1060 0/0:64,0:64:99:0,180,2077 0/0:59,0:59:99:0,153,1795 0/0:41,0:41:99:0,108,1248 0/0:27,0:27:81.20:0,81,880 0/0:50,0:50:99:0,138,1579 0/0:81,0:81:99:0,211,2453 0/0:42,0:42:99:0,108,1246 0/0:41,0:41:99:0,114,1304 0/0:30,0:30:84.22:0,84,927 0/0:29,0:29:87.22:0,87,955 0/0:44,0:44:99:0,129,1435 11 75136593 . G A 120.31 . AC=2;AF=0.024;AN=82;BaseQRankSum=0.083;DP=290;Dels=0.00;FS=1.758;HRun=0;HaplotypeScore=0.1868;InbreedingCoeff=-0.0413;MQ=58.91;MQ0=0;MQRankSum=0.259;QD=10.03;ReadPosRankSum=0.126 GT:AD:DP:GQ:PL 0/0:4,0:4:12.02:0,12,119 0/0:10,0:10:27.07:0,27,310 0/1:4,1:5:25.76:26,0,86 0/0:15,0:15:36.11:0,36,455 0/0:10,0:10:27.06:0,27,312 0/0:7,0:7:18.05:0,18,225 0/0:8,0:8:18.05:0,18,218 0/0:4,0:4:6.02:0,6,74 0/0:6,0:7:15.04:0,15,164 0/0:5,0:5:12.01:0,12,131 0/0:3,0:3:6.02:0,6,83 0/0:2,0:2:6.01:0,6,62 0/0:3,0:3:9.02:0,9,105 0/0:3,0:3:9.02:0,9,102 0/0:16,0:16:39.09:0,39,415 0/0:8,0:8:21.06:0,21,242 0/1:1,6:7:15.40:156,0,15 0/0:7,0:7:18.05:0,18,209 0/0:10,0:10:27.07:0,27,311 0/0:9,0:10:24.02:0,24,255 0/0:9,0:9:21.06:0,21,248 0/0:10,0:10:27.07:0,27,316 0/0:15,0:15:42.13:0,42,518 0/0:3,0:3:9.03:0,9,109 0/0:16,0:16:39.11:0,39,483 0/0:6,0:6:15.04:0,15,181 0/0:4,0:4:9.02:0,9,94 0/0:4,0:4:12.03:0,12,139 0/0:5,0:5:15.04:0,15,171 ./. 0/0:5,0:5:15.03:0,15,156 0/0:15,0:15:39.11:0,39,443 0/0:7,0:7:18.05:0,18,212 0/0:2,0:2:6.02:0,6,65 0/0:4,0:4:12.03:0,12,129 0/0:3,0:3:9.03:0,9,103 0/0:12,0:12:36.09:0,36,395 0/0:2,0:2:3.01:0,3,32 0/0:4,0:4:12.03:0,12,132 0/0:5,0:5:15.04:0,15,177 0/0:7,0:7:15.04:0,15,176 0/0:8,0:8:21.06:0,21,258 11 75154244 . C G 186.39 . AC=13;AF=0.155;AN=84;BaseQRankSum=-5.677;DP=388;Dels=0.00;FS=199.709;HRun=2;HaplotypeScore=0.2928;InbreedingCoeff=-0.2193;MQ=57.78;MQ0=0;MQRankSum=2.184;QD=1.81;ReadPosRankSum=-5.923 GT:AD:DP:GQ:PL 0/0:4,4:8:12.03:0,12,138 0/0:4,2:6:12.04:0,12,148 0/1:3,2:5:52.71:53,0,104 0/1:11,10:21:31.39:31,0,369 0/0:9,6:15:27.08:0,27,329 0/0:6,6:12:1.05:6,0,188 0/0:3,1:4:3.01:0,3,39 0/1:3,3:6:22.31:22,0,108 0/1:2,3:5:26.22:26,0,70 0/0:4,2:6:9.03:0,9,116 0/1:3,1:4:21.40:21,0,103 0/1:4,1:5:8.67:9,0,119 0/0:3,0:3:6.01:0,6,64 0/0:4,4:8:12.04:0,12,152 0/0:22,6:28:35.77:0,36,763 0/0:12,2:14:5.43:0,5,334 0/1:7,2:9:31.24:31,0,206 0/1:2,4:6:22.52:23,0,65 0/0:8,0:8:24.07:0,24,290 0/0:8,2:10:15.04:0,15,179 0/1:8,1:9:9.37:9,0,226 0/0:11,1:12:30.09:0,30,371 0/0:8,12:20:21.07:0,21,275 0/0:5,2:7:15.05:0,15,200 0/1:5,2:7:19.74:20,0,186 0/0:6,7:13:15.05:0,15,191 0/0:4,2:6:9.03:0,9,108 0/0:10,0:10:27.08:0,27,333 0/0:4,2:6:9.03:0,9,108 0/1:7,4:11:8.63:9,0,169 0/1:3,5:8:18.64:19,0,70 0/0:10,3:13:20.28:0,20,240 0/0:5,3:8:9.02:0,9,105 0/0:4,2:6:12.03:0,12,144 0/0:5,5:10:15.05:0,15,188 0/0:7,2:9:15.51:0,16,180 0/0:9,3:12:27.08:0,27,315 0/0:8,0:8:21.07:0,21,264 0/0:5,0:5:15.04:0,15,181 0/1:4,3:7:51.76:52,0,100 0/0:13,1:14:23.58:0,24,371 0/0:4,0:4:12.03:0,12,138 11 75160575 . G A 5072.97 . AC=59;AF=0.720;AN=82;BaseQRankSum=5.363;DP=202;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2035;InbreedingCoeff=0.1426;MQ=58.35;MQ0=0;MQRankSum=1.047;QD=27.27;ReadPosRankSum=-0.810 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:74,6,0 1/1:0,4:4:12.03:138,12,0 1/1:0,4:4:12.04:148,12,0 0/1:2,3:5:55.44:92,0,55 1/1:0,2:2:6.02:76,6,0 1/1:0,1:1:3.01:36,3,0 0/1:2,1:3:30.29:30,0,61 1/1:0,4:4:12.03:141,12,0 0/0:4,0:4:9.02:0,9,99 0/1:2,2:4:56.49:56,0,58 0/1:1,0:1:1.76:0,3,28 0/1:3,4:7:81.29:84,0,81 1/1:0,4:4:12.04:147,12,0 0/1:4,3:7:90.69:91,0,112 0/1:5,6:11:99:176,0,127 1/1:0,8:8:24.07:292,24,0 0/0:4,0:4:12.02:0,12,130 1/1:0,2:2:6.02:70,6,0 1/1:0,3:3:9.03:116,9,0 1/1:0,10:10:30.06:349,30,0 1/1:1,10:11:30.09:366,30,0 0/1:4,1:5:21.94:22,0,118 1/1:0,10:10:30.09:357,30,0 0/1:2,1:3:29.55:30,0,63 1/1:0,5:5:12.03:143,12,0 0/1:2,1:3:18.64:19,0,64 1/1:0,2:3:6.02:76,6,0 ./. 0/0:3,0:3:9.02:0,9,97 0/1:2,5:7:10.60:147,0,11 0/0:3,0:3:9.02:0,9,97 1/1:0,3:3:9.03:110,9,0 1/1:0,3:3:9.03:103,9,0 1/1:0,2:2:6.02:72,6,0 0/1:3,3:6:84.01:84,0,89 1/1:0,12:12:36.11:437,36,0 1/1:0,11:11:33.10:400,33,0 1/1:0,7:7:21.06:243,21,0 1/1:0,3:4:9.03:102,9,0 0/0:2,0:2:6.02:0,6,65 1/1:0,5:5:15.05:184,15,0 0/1:2,2:4:60.22:64,0,60 11 75317003 . G C 1443.28 . AC=24;AF=0.286;AN=84;BaseQRankSum=-20.080;DP=2408;Dels=0.00;FS=3071.889;HRun=1;HaplotypeScore=2.9136;InbreedingCoeff=-0.4085;MQ=59.17;MQ0=0;MQRankSum=0.122;QD=1.08;ReadPosRankSum=-22.902 GT:AD:DP:GQ:PL 0/0:34,2:36:69.18:0,69,1215 0/0:34,5:39:71.45:0,71,1148 0/1:34,8:42:28.46:28,0,1110 0/0:100,23:123:99:0,108,3403 0/1:106,26:133:19.19:19,0,3474 0/1:68,22:90:43.30:43,0,2224 0/0:52,13:65:8.01:0,8,1816 0/0:63,16:79:22.87:0,23,2051 0/1:40,11:51:70.96:71,0,1215 0/1:25,7:32:20.43:20,0,753 0/0:42,4:46:92.50:0,92,1397 0/1:34,6:40:2.62:3,0,1008 0/0:31,6:37:2.36:0,2,918 0/0:27,8:35:7.32:0,7,806 0/1:117,32:149:99:192,0,3494 0/0:40,3:43:90.86:0,91,1417 0/0:44,8:52:69.37:0,69,1424 0/0:27,7:34:49.87:0,50,943 0/1:43,12:55:99:176,0,1326 0/1:46,14:60:26.42:26,0,1459 0/1:52,12:64:66.09:66,0,1704 0/0:30,9:39:42.46:0,42,953 0/0:110,32:142:22.75:0,23,3715 0/1:72,21:93:99:120,0,2485 0/0:69,15:84:87.38:0,87,2484 0/0:62,18:80:36.67:0,37,2142 0/1:13,7:20:25.55:26,0,409 0/0:35,9:44:3.90:0,4,1049 0/1:35,12:47:13.07:13,0,1042 0/1:29,7:36:8.53:9,0,882 0/1:29,11:40:99:100,0,886 0/1:45,14:61:18.65:19,0,1399 0/1:27,10:38:14.57:15,0,833 0/1:29,11:40:99:103,0,861 0/1:29,8:37:87.48:87,0,980 0/1:33,5:38:56.53:57,0,1103 0/1:38,19:57:99:146,0,1133 0/1:28,8:36:91.95:92,0,916 0/0:37,4:42:84.69:0,85,1313 0/1:31,10:41:84.28:84,0,950 0/1:26,13:39:99:100,0,773 0/0:44,5:49:42.81:0,43,1474 11 75526481 . C A 175.91 . AC=6;AF=0.120;AN=50;BaseQRankSum=-1.457;DP=43;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1895;InbreedingCoeff=0.0601;MQ=55.89;MQ0=0;MQRankSum=-0.176;QD=15.99;ReadPosRankSum=2.354 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:33,3,0 0/1:2,2:4:35.70:57,0,36 ./. 0/0:1,0:1:3.01:0,3,40 0/0:3,0:3:6.02:0,6,74 ./. 0/0:2,0:2:6.02:0,6,79 ./. 0/0:1,0:1:3.01:0,3,39 ./. ./. ./. 0/0:1,0:1:3.01:0,3,38 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,39 ./. 0/0:2,0:2:6.01:0,6,64 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.02:0,9,96 ./. ./. 0/0:2,0:2:3.01:0,3,39 0/0:1,0:1:3.01:0,3,40 ./. 0/1:1,1:2:30.11:30,0,34 ./. 0/0:1,0:1:3.01:0,3,32 ./. 0/0:2,0:2:6.02:0,6,77 0/0:1,0:1:3.01:0,3,37 ./. 1/1:0,4:4:12.02:136,12,0 0/0:2,0:2:6.02:0,6,71 ./. ./. 0/0:1,0:1:3.01:0,3,32 0/0:3,0:3:6.02:0,6,75 ./. 0/0:1,0:1:3.01:0,3,40 0/0:1,0:1:3:0,3,27 ./. 0/0:1,0:1:3.01:0,3,32 11 75526482 . C G 153.03 . AC=6;AF=0.120;AN=50;BaseQRankSum=-0.378;DP=43;Dels=0.00;FS=1.868;HRun=1;HaplotypeScore=0.1895;InbreedingCoeff=0.0603;MQ=55.89;MQ0=0;MQRankSum=-1.069;QD=13.91;ReadPosRankSum=2.352 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:33,3,0 0/1:2,2:4:29.23:29,0,39 ./. 0/0:1,0:1:3.01:0,3,40 0/0:3,0:3:6.02:0,6,75 ./. 0/0:2,0:2:6.02:0,6,80 ./. 0/0:1,0:1:3.01:0,3,35 ./. ./. ./. 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,38 0/0:1,0:1:3.01:0,3,32 ./. 0/0:2,0:2:6.02:0,6,76 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.03:0,9,102 ./. ./. 0/0:2,0:2:6.01:0,6,57 0/0:1,0:1:3.01:0,3,39 ./. 0/1:1,1:2:34.63:35,0,35 ./. 0/0:1,0:1:3:0,3,28 ./. 0/0:2,0:2:6.02:0,6,71 0/0:1,0:1:3.01:0,3,39 ./. 1/1:0,4:4:12.02:136,12,0 0/0:2,0:2:6.02:0,6,68 ./. ./. 0/0:1,0:1:3:0,3,29 0/0:3,0:3:3.01:0,3,38 ./. 0/0:1,0:1:3.01:0,3,32 0/0:1,0:1:3:0,3,29 ./. 0/0:1,0:1:3.01:0,3,31 11 75905800 . G A 911.93 . AC=19;AF=0.250;AN=76;BaseQRankSum=2.701;DP=118;Dels=0.00;FS=3.022;HRun=0;HaplotypeScore=0.1183;InbreedingCoeff=0.1857;MQ=58.78;MQ0=0;MQRankSum=0.138;QD=17.88;ReadPosRankSum=-0.701 GT:AD:DP:GQ:PL 1/1:0,5:5:12.04:152,12,0 0/0:1,0:1:3.01:0,3,35 ./. 0/1:3,4:7:84.63:118,0,85 0/1:3,2:5:35.74:36,0,74 ./. 0/0:3,0:3:9.03:0,9,103 0/1:1,2:3:31.62:67,0,32 0/0:4,0:4:9.02:0,9,92 0/0:4,0:4:6.01:0,6,72 0/0:2,0:2:3.01:0,3,32 0/0:4,0:4:12.03:0,12,127 0/0:1,0:1:3.01:0,3,33 0/0:1,0:1:3.01:0,3,32 0/1:3,7:10:75.55:196,0,76 0/1:1,1:2:25.53:30,0,26 1/1:0,2:2:6.02:71,6,0 0/0:1,0:1:3.01:0,3,31 0/0:3,0:3:9.02:0,9,97 0/1:1,3:4:23.47:65,0,23 0/1:1,2:3:29.55:59,0,30 0/0:2,0:2:6.02:0,6,71 0/0:3,0:3:9.01:0,9,93 0/0:3,0:3:9.01:0,9,92 0/0:2,0:2:6.02:0,6,73 1/1:0,2:2:6.02:72,6,0 0/0:2,0:2:6.02:0,6,66 0/0:4,0:4:9.03:0,9,116 0/0:3,0:3:6.01:0,6,62 0/0:3,0:3:9.03:0,9,104 0/0:2,0:2:6.01:0,6,63 1/1:0,2:2:3.01:38,3,0 0/0:6,0:6:15.05:0,15,192 ./. 0/0:1,0:1:3.01:0,3,33 0/0:1,1:2:3.01:0,3,33 0/0:5,0:5:12.01:0,12,123 0/0:1,0:1:3.01:0,3,32 1/1:1,3:4:9.03:106,9,0 ./. 1/1:0,2:2:5.99:59,6,0 0/0:3,0:3:9.03:0,9,106 11 76853783 . T C 8497.14 . AC=27;AF=0.321;AN=84;BaseQRankSum=3.847;DP=884;Dels=0.00;FS=18.352;HRun=0;HaplotypeScore=0.4712;InbreedingCoeff=0.3990;MQ=58.99;MQ0=0;MQRankSum=1.131;QD=20.09;ReadPosRankSum=0.912 GT:AD:DP:GQ:PL 0/0:19,0:19:51.16:0,51,635 0/0:13,0:13:33.10:0,33,408 0/0:15,0:15:39.12:0,39,487 1/1:0,33:33:78.25:1054,78,0 1/1:0,29:29:75.25:1019,75,0 0/1:17,8:25:99:193,0,418 0/1:9,8:17:99:166,0,271 0/1:7,9:16:99:249,0,193 0/0:14,0:14:36.11:0,36,449 0/0:23,0:23:63.20:0,63,782 0/0:12,0:13:33.09:0,33,395 0/0:20,0:20:60.19:0,60,728 0/0:15,0:15:42.13:0,42,522 0/0:13,0:13:33.10:0,33,410 0/1:29,20:49:99:485,0,746 0/1:5,8:13:99:210,0,135 1/1:0,13:13:36.10:417,36,0 0/0:17,0:17:48.14:0,48,583 0/0:37,0:37:81.25:0,81,1015 0/1:25,24:49:99:555,0,717 0/0:39,0:39:99:0,108,1334 0/0:29,0:29:75.23:0,75,928 1/1:0,39:39:96.30:1264,96,0 1/1:0,16:16:42.14:570,42,0 0/1:15,5:20:99:141,0,407 0/1:9,5:14:99:153,0,286 0/0:7,0:7:21.06:0,21,254 0/0:18,0:18:48.15:0,48,603 0/0:20,0:20:54.17:0,54,672 0/0:22,0:22:57.16:0,57,695 0/0:13,0:13:39.11:0,39,465 0/0:34,0:34:87.27:0,87,1090 0/0:27,1:28:72.22:0,72,882 0/1:10,11:21:99:298,0,276 0/1:4,7:11:99:202,0,115 0/0:16,0:16:45.14:0,45,559 1/1:0,19:19:48.10:562,48,0 1/1:0,10:10:27.07:303,27,0 1/1:0,18:18:48.14:587,48,0 0/0:21,0:21:57.17:0,57,703 0/0:14,0:14:33.10:0,33,414 0/1:8,3:11:68.54:69,0,247 11 76866955 . G A 878.99 . AC=5;AF=0.060;AN=84;BaseQRankSum=5.593;DP=670;Dels=0.00;FS=0.796;HRun=0;HaplotypeScore=0.5077;InbreedingCoeff=-0.0723;MQ=58.60;MQ0=0;MQRankSum=0.670;QD=13.32;ReadPosRankSum=-1.148 GT:AD:DP:GQ:PL 0/0:14,0:14:39.09:0,39,432 0/0:17,0:18:39.11:0,39,467 0/0:11,0:11:33.09:0,33,369 0/0:27,0:27:72.20:0,72,871 0/0:12,0:12:36.11:0,36,435 0/0:8,0:8:24.05:0,24,266 0/0:14,0:14:39.12:0,39,477 0/0:20,0:20:51.13:0,51,624 0/0:16,0:16:48.12:0,48,519 0/0:8,0:8:21.06:0,21,244 0/0:16,0:16:45.12:0,45,496 0/0:14,0:14:42.09:0,42,455 0/0:4,0:4:9.02:0,9,96 0/0:19,0:19:51.14:0,51,587 0/0:40,0:40:99:0,108,1201 0/0:16,0:16:45.10:0,45,472 0/0:13,0:13:36.09:0,36,400 0/0:9,0:9:24.05:0,24,263 0/0:27,0:27:81.20:0,81,871 0/0:28,0:28:69.18:0,69,779 0/0:33,0:33:90.23:0,90,1008 0/0:20,0:20:57.15:0,57,639 0/0:13,0:13:36.11:0,36,430 0/0:10,0:10:30.06:0,30,331 0/0:16,0:16:42.12:0,42,497 0/0:13,0:13:36.10:0,36,434 0/1:3,2:5:55.46:55,0,87 0/1:7,9:16:99:261,0,189 0/1:2,4:6:46.95:126,0,47 0/0:10,1:11:2.76:1,0,265 0/0:18,0:18:51.13:0,51,573 0/0:18,0:18:48.14:0,48,568 0/0:22,0:22:63.16:0,63,693 0/1:11,11:22:99:303,0,298 0/0:17,0:17:48.13:0,48,536 0/1:8,9:17:99:229,0,222 0/0:25,0:25:69.14:0,69,767 0/0:12,0:12:36.10:0,36,401 0/0:9,0:9:27.06:0,27,296 0/0:10,0:10:27.07:0,27,309 0/0:10,0:10:30.06:0,30,318 0/0:13,0:13:36.09:0,36,388 11 76867135 . C T 1031.82 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.402;DP=1184;Dels=0.00;FS=32.796;HRun=1;HaplotypeScore=0.4049;InbreedingCoeff=-0.0244;MQ=58.64;MQ0=0;MQRankSum=0.814;QD=12.28;ReadPosRankSum=1.962 GT:AD:DP:GQ:PL 0/0:16,0:16:48.15:0,48,593 0/0:19,0:19:54.17:0,54,687 0/0:21,0:21:63.20:0,63,794 0/0:40,0:40:99:0,102,1384 0/0:41,0:41:99:0,114,1577 0/0:34,0:34:90.29:0,90,1221 0/0:18,0:18:48.16:0,48,667 0/0:26,0:26:69.23:0,69,943 0/0:19,0:19:57.18:0,57,710 0/0:24,0:24:69.22:0,69,891 0/0:29,0:29:69.22:0,69,906 0/0:19,0:19:51.17:0,51,665 0/0:15,0:15:42.13:0,42,531 0/0:17,0:17:45.15:0,45,589 0/0:79,1:80:99:0,196,2561 0/0:17,0:17:51.16:0,51,649 0/0:22,0:22:63.20:0,63,812 0/0:15,0:15:42.13:0,42,530 0/1:18,16:34:99:454,0,500 0/1:23,27:50:99:640,0,621 0/0:36,0:36:96.31:0,96,1239 0/0:28,0:28:75.23:0,75,947 0/0:58,0:58:99:0,160,2175 0/0:24,0:24:66.22:0,66,919 0/0:45,0:45:99:0,114,1596 0/0:44,0:44:99:0,105,1473 0/0:15,0:15:39.12:0,39,498 0/0:28,0:28:72.23:0,72,932 0/0:28,0:28:69.22:0,69,902 0/0:17,0:17:45.14:0,45,585 0/0:23,0:23:60.18:0,60,761 0/0:43,0:43:99:0,114,1474 0/0:32,0:32:90.29:0,90,1151 0/0:30,0:30:78.25:0,78,1001 0/0:23,0:23:69.21:0,69,861 0/0:27,0:27:69.22:0,69,902 0/0:31,0:31:87.27:0,87,1103 0/0:20,0:20:51.16:0,51,665 0/0:19,0:19:57.18:0,57,718 0/0:12,0:12:36.12:0,36,463 0/0:17,0:17:51.16:0,51,645 0/0:28,0:28:81.26:0,81,1047 11 76883850 . G A 66.17 . AC=1;AF=0.013;AN=80;BaseQRankSum=-2.503;DP=204;Dels=0.00;FS=2.023;HRun=0;HaplotypeScore=0.0889;InbreedingCoeff=-0.0578;MQ=58.09;MQ0=0;MQRankSum=-0.164;QD=13.23;ReadPosRankSum=0.093 GT:AD:DP:GQ:PL 0/0:6,0:6:18.05:0,18,221 0/0:6,0:6:18.06:0,18,226 0/0:7,0:7:15.05:0,15,199 0/0:6,0:6:12.04:0,12,170 0/0:2,0:2:6.02:0,6,81 0/0:1,0:1:3.01:0,3,40 0/0:2,0:2:6.02:0,6,82 0/0:3,0:3:9.03:0,9,115 ./. 0/0:5,0:5:12.04:0,12,149 0/0:6,0:6:15.05:0,15,193 0/0:7,0:7:18.06:0,18,229 0/0:3,0:3:9.03:0,9,106 0/0:7,0:7:18.06:0,18,240 0/0:17,0:17:42.13:0,42,534 0/0:5,0:5:15.05:0,15,179 0/0:2,0:2:6.02:0,6,72 0/0:3,0:3:9.03:0,9,106 0/0:5,0:5:15.04:0,15,183 0/0:8,0:9:18.06:0,18,235 0/0:13,0:13:27.07:0,27,348 0/0:7,0:7:18.06:0,18,232 0/0:7,0:7:21.06:0,21,261 0/0:4,0:4:6.02:0,6,86 ./. 0/0:4,0:4:12.04:0,12,155 0/0:2,0:2:6.02:0,6,75 0/0:5,0:5:15.04:0,15,178 0/1:1,4:5:18.40:112,0,18 0/0:9,0:9:21.06:0,21,262 0/0:6,0:6:18.06:0,18,229 0/0:7,0:7:18.06:0,18,238 0/0:6,0:6:15.05:0,15,188 0/0:1,0:1:3.01:0,3,37 0/0:5,0:5:12.04:0,12,160 0/0:1,0:1:3.01:0,3,40 0/0:4,0:4:9.03:0,9,122 0/0:4,0:4:12.04:0,12,153 0/0:2,0:2:6.02:0,6,68 0/0:3,1:4:9.03:0,9,110 0/0:2,0:2:3.01:0,3,33 0/0:4,0:4:9.03:0,9,116 11 76914106 . C G 110.16 . AC=9;AF=0.145;AN=62;BaseQRankSum=-3.783;DP=95;Dels=0.00;FS=37.087;HRun=2;HaplotypeScore=0.2541;InbreedingCoeff=0.0243;MQ=56.91;MQ0=0;MQRankSum=-0.222;QD=6.12;ReadPosRankSum=-1.875 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,39 ./. 0/0:2,0:2:3.01:0,3,40 ./. ./. 0/0:1,0:1:3.01:0,3,41 0/0:1,0:1:3.01:0,3,37 ./. 0/0:2,2:4:2.48:0,2,31 0/0:1,0:1:3.01:0,3,34 ./. 0/0:3,2:5:9.02:0,9,107 0/0:2,1:3:2.90:0,3,16 0/0:6,3:9:2.26:2,0,176 0/0:1,0:1:3:0,3,29 0/1:1,3:4:30.29:58,0,30 0/1:2,1:3:25.53:26,0,31 0/1:3,2:5:18.64:19,0,60 0/0:4,2:6:9.03:0,9,110 ./. 0/0:1,3:4:3.01:0,3,35 1/1:0,1:1:3.01:38,3,0 0/0:1,1:2:3.01:0,3,37 1/1:0,1:1:3:27,3,0 0/0:1,1:2:3.01:0,3,41 0/0:1,0:1:3.01:0,3,30 0/0:4,1:5:9.02:0,9,105 0/0:2,1:3:6.02:0,6,71 ./. 0/0:2,1:3:3.01:0,3,33 0/0:3,1:4:9.01:0,9,94 0/0:2,1:3:6.02:0,6,75 ./. 0/0:1,0:1:3.01:0,3,32 1/1:2,2:4:3.01:35,3,0 ./. ./. 0/0:1,0:1:3.01:0,3,33 0/0:3,2:5:8.90:0,9,91 0/0:2,1:3:3.01:0,3,36 ./. 11 76914169 . T G 53.65 . AC=7;AF=0.097;AN=72;BaseQRankSum=-5.955;DP=162;Dels=0.00;FS=6.308;HRun=2;HaplotypeScore=0.2027;InbreedingCoeff=-0.2030;MQ=57.59;MQ0=0;MQRankSum=-0.373;QD=1.31;ReadPosRankSum=-3.344 GT:AD:DP:GQ:PL 0/0:2,1:3:3:0,3,29 0/0:3,1:4:5.99:0,6,59 0/0:1,3:4:3.01:0,3,32 0/1:3,1:4:13.66:14,0,83 ./. 0/0:2,0:2:6.02:0,6,66 0/0:1,0:2:3.01:0,3,32 0/1:1,1:2:23.61:24,0,26 0/0:2,0:2:6.01:0,6,56 0/1:4,2:6:18.39:18,0,122 0/0:6,0:7:18.05:0,18,198 0/0:2,1:3:3.01:0,3,34 0/0:1,1:2:3.01:0,3,33 0/0:1,0:1:3.01:0,3,38 0/1:6,4:10:19.52:20,0,99 0/0:3,0:3:9.03:0,9,103 0/0:3,1:4:9.01:0,9,84 0/0:4,1:5:9.02:0,9,91 0/1:3,2:5:34.35:34,0,90 0/0:8,2:10:21.06:0,21,232 0/0:4,2:6:9.02:0,9,104 0/0:5,1:6:12.04:0,12,144 0/0:2,2:4:3.01:0,3,34 ./. ./. 0/0:5,0:5:15.03:0,15,157 ./. ./. 0/0:3,2:5:9.03:0,9,106 0/0:5,1:6:15.04:0,15,169 0/0:4,1:5:9.02:0,9,98 0/0:4,0:4:9.02:0,9,100 ./. 0/0:2,0:2:3.01:0,3,34 0/0:1,0:1:3.01:0,3,35 0/0:2,0:2:6.02:0,6,73 0/1:3,3:6:35.32:35,0,92 0/0:1,0:1:3.01:0,3,31 0/0:5,2:7:12.03:0,12,131 0/0:2,1:3:6.01:0,6,56 0/1:5,3:8:4.83:5,0,129 0/0:4,0:4:6.02:0,6,70 11 76917220 . A G 13255.35 . AC=39;AF=0.464;AN=84;BaseQRankSum=8.725;DP=1057;Dels=0.00;FS=4.267;HRun=1;HaplotypeScore=0.3971;InbreedingCoeff=-0.0951;MQ=58.64;MQ0=0;MQRankSum=1.365;QD=17.30;ReadPosRankSum=0.082 GT:AD:DP:GQ:PL 1/1:1,16:17:14.71:530,15,0 0/1:10,9:19:99:252,0,319 0/0:13,0:14:39.12:0,39,482 0/1:22,31:53:99:856,0,653 0/1:16,18:34:99:528,0,461 0/1:11,11:22:99:328,0,332 1/1:0,16:16:39.13:534,39,0 0/1:15,11:26:99:333,0,456 1/1:0,15:15:42.13:541,42,0 1/1:0,19:19:51.14:642,51,0 1/1:0,13:13:36.11:461,36,0 0/1:11,1:12:6.89:7,0,312 1/1:0,16:16:42.12:514,42,0 0/0:17,0:17:45.14:0,45,574 0/0:83,0:83:99:0,184,2427 0/1:10,12:22:99:356,0,280 0/0:22,0:22:60.19:0,60,759 0/1:5,6:11:99:126,0,136 0/1:24,15:39:99:399,0,724 0/1:22,14:36:99:342,0,692 0/1:21,22:43:99:592,0,597 0/0:23,0:23:63.19:0,63,767 1/1:0,49:49:99:1635,120,0 0/1:8,6:14:99:202,0,211 0/1:13,16:29:99:419,0,344 0/0:32,0:33:75.24:0,75,1003 0/0:11,0:11:30.09:0,30,379 0/0:28,0:28:72.21:0,72,896 0/1:10,2:12:41.67:42,0,305 0/1:15,7:22:99:177,0,461 0/1:9,10:19:99:293,0,250 0/1:20,19:39:99:492,0,587 0/1:10,14:24:99:380,0,311 0/0:23,0:23:63.20:0,63,789 0/1:16,5:21:99:125,0,484 0/0:18,0:19:51.16:0,51,641 0/1:9,25:34:99:751,0,214 1/1:0,18:18:51.16:649,51,0 0/0:18,0:18:45.14:0,45,572 0/1:15,12:27:99:328,0,419 0/1:18,7:25:99:132,0,562 0/1:10,10:20:99:293,0,258 11 76919478 . C A 15126.46 . AC=43;AF=0.512;AN=84;BaseQRankSum=-14.273;DP=1178;Dels=0.00;FS=8.482;HRun=0;HaplotypeScore=3.9360;InbreedingCoeff=-0.1912;MQ=58.14;MQ0=0;MQRankSum=-1.449;QD=16.55;ReadPosRankSum=1.271 GT:AD:DP:GQ:PL 0/0:29,0:29:84.27:0,84,1070 0/1:15,9:24:99:251,0,468 0/1:13,12:25:99:362,0,428 1/1:0,25:25:57.18:743,57,0 0/1:15,14:29:99:442,0,453 0/1:22,16:38:99:406,0,723 0/1:15,11:26:99:309,0,477 0/1:15,8:23:99:206,0,491 1/1:0,14:14:39.11:471,39,0 1/1:0,18:18:54.17:653,54,0 1/1:0,20:20:60.18:720,60,0 0/1:8,9:17:99:249,0,229 1/1:0,16:16:45.13:533,45,0 0/0:30,0:30:81.25:0,81,1044 0/1:46,29:75:99:729,0,1230 0/1:8,9:17:99:269,0,245 1/1:0,19:19:54.16:642,54,0 0/1:11,8:19:99:236,0,333 0/1:25,19:44:99:538,0,765 0/0:59,0:59:99:0,135,1719 0/1:16,18:34:99:538,0,510 0/0:34,0:34:93.29:0,93,1189 1/1:0,32:32:84.26:1060,84,0 0/1:20,10:30:99:272,0,628 0/1:15,14:29:99:390,0,492 0/0:22,0:22:51.16:0,51,706 0/1:10,7:17:99:202,0,280 0/1:14,11:25:99:287,0,431 0/1:12,16:28:99:413,0,336 0/0:30,0:30:84.27:0,84,1065 0/1:18,5:23:99:119,0,584 0/1:18,16:34:99:459,0,541 0/1:12,13:25:99:356,0,344 0/1:15,12:27:99:338,0,446 1/1:0,31:31:93.25:1085,93,0 0/0:28,0:28:75.22:0,75,953 0/1:34,22:56:99:494,0,952 1/1:0,21:21:60.19:740,60,0 0/1:12,7:19:99:203,0,354 0/0:32,0:32:87.28:0,87,1122 0/1:12,7:19:99:165,0,362 0/1:7,8:15:99:246,0,192 11 76919484 . G A 1018.48 . AC=3;AF=0.036;AN=84;BaseQRankSum=4.085;DP=1283;Dels=0.00;FS=4.244;HRun=0;HaplotypeScore=1.4178;InbreedingCoeff=-0.0370;MQ=58.22;MQ0=0;MQRankSum=0.616;QD=11.57;ReadPosRankSum=0.092 GT:AD:DP:GQ:PL 0/0:31,0:31:87.20:0,87,939 0/0:27,0:27:78.19:0,78,870 0/0:25,0:25:75.20:0,75,829 0/0:26,0:26:63.19:0,63,796 0/0:32,0:32:90.27:0,90,1116 0/0:39,0:39:99:0,102,1228 0/1:14,15:29:99:434,0,401 0/0:28,0:28:72.21:0,72,883 0/0:16,0:16:48.12:0,48,531 0/0:21,0:21:60.15:0,60,667 0/0:19,0:19:54.14:0,54,607 0/0:19,0:19:54.12:0,54,594 0/0:18,0:18:51.11:0,51,570 0/0:32,0:32:90.25:0,90,1026 0/0:82,0:82:99:0,217,2518 0/0:17,0:17:48.11:0,48,513 0/0:21,0:21:54.15:0,54,620 0/0:23,0:23:69.19:0,69,795 0/0:48,0:48:99:0,132,1493 0/0:60,0:60:99:0,141,1692 0/0:42,0:42:99:0,111,1278 0/0:36,0:36:96.26:0,96,1125 0/0:34,1:35:51.14:0,51,1027 0/0:30,0:30:81.24:0,81,999 0/0:32,0:32:87.27:0,87,1083 0/0:24,0:24:57.18:0,57,726 0/0:19,0:19:54.15:0,54,611 0/0:24,0:24:72.19:0,72,810 0/0:30,0:30:75.18:0,75,880 0/1:20,13:33:99:336,0,564 0/0:26,0:26:75.20:0,75,851 0/0:43,0:43:99:0,114,1308 0/1:14,12:26:99:323,0,373 0/0:25,0:25:75.20:0,75,834 0/0:35,0:35:99:0,102,1131 0/0:30,0:30:78.16:0,78,874 0/0:53,0:53:99:0,135,1569 0/0:25,0:25:66.17:0,66,732 0/0:22,0:22:57.16:0,57,652 0/0:33,0:33:90.24:0,90,1025 0/0:26,0:26:69.18:0,69,794 0/0:21,0:21:57.16:0,57,655 11 76979550 . T C 4517.76 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.694;DP=6330;DS;Dels=0.00;FS=10.456;HRun=0;HaplotypeScore=2.4345;InbreedingCoeff=-0.0244;MQ=59.50;MQ0=0;MQRankSum=1.088;QD=14.53;ReadPosRankSum=-1.289 GT:AD:DP:GQ:PL 0/0:119,0:120:99:0,319,3969 0/0:110,0:110:99:0,292,3656 0/0:102,0:102:99:0,280,3478 0/0:207,0:207:99:0,551,7076 0/0:218,0:218:99:0,605,7792 0/0:226,0:226:99:0,590,7843 0/0:214,0:215:99:0,581,7532 0/0:215,0:215:99:0,557,7220 0/0:108,0:108:99:0,283,3483 0/0:116,0:116:99:0,310,3861 0/0:110,0:110:99:0,292,3652 0/0:111,0:111:99:0,301,3757 0/0:78,0:78:99:0,202,2542 0/0:110,0:110:99:0,295,3712 0/0:248,0:250:99:0,674,8333 0/0:101,0:101:99:0,277,3404 0/0:137,0:137:99:0,373,4661 0/0:116,0:116:99:0,325,4017 0/0:194,0:194:99:0,509,6452 0/0:225,0:225:99:0,590,7420 0/0:205,0:205:99:0,539,6823 0/0:126,0:126:99:0,331,4118 0/0:222,0:222:99:0,596,7680 0/0:220,0:220:99:0,578,7515 0/0:224,0:224:99:0,557,7301 0/0:198,0:198:99:0,548,7052 0/0:98,0:98:99:0,253,3200 0/0:123,0:123:99:0,340,4167 0/0:86,0:86:99:0,238,2955 0/0:127,0:127:99:0,325,4126 0/0:108,0:108:99:0,289,3632 0/0:198,0:198:99:0,500,6381 0/0:140,0:141:99:0,391,4805 0/0:125,0:125:99:0,343,4269 0/0:121,0:121:99:0,319,3993 0/0:121,0:121:99:0,334,4184 0/1:91,107:198:99:2885,0,2443 0/0:118,0:118:99:0,316,3962 0/1:58,55:113:99:1633,0,1654 0/0:130,0:130:99:0,346,4371 0/0:125,0:126:99:0,337,4179 0/0:133,0:133:99:0,376,4647 11 77635882 . A C 7249.89 . AC=19;AF=0.226;AN=84;BaseQRankSum=13.401;DP=2886;Dels=0.00;FS=0.797;HRun=0;HaplotypeScore=0.5176;InbreedingCoeff=-0.2923;MQ=21.81;MQ0=1230;MQRankSum=-0.007;QD=5.62;ReadPosRankSum=1.689 GT:AD:DP:GQ:PL 0/0:41,0:41:57.13:0,57,618 0/0:56,0:56:81.18:0,81,887 0/0:56,0:56:81.18:0,81,896 0/0:118,0:118:99:0,159,1728 0/0:102,0:102:99:0,150,1640 0/1:65,30:95:99:450,0,866 0/1:64,44:109:99:814,0,790 0/0:101,0:101:99:0,153,1743 0/0:71,0:71:99:0,99,1097 0/1:33,14:47:99:133,0,472 0/0:57,0:57:93.19:0,93,1009 0/0:76,0:76:99:0,108,1123 0/0:50,0:50:51.11:0,51,569 0/0:39,0:39:60.10:0,60,634 0/1:103,54:157:99:740,0,935 0/1:25,17:42:99:352,0,190 0/1:32,15:47:99:163,0,349 0/0:52,0:52:93.15:0,93,987 0/0:67,0:67:96.16:0,96,1037 0/0:87,0:87:99:0,108,1183 0/1:51,20:71:99:359,0,518 0/1:27,14:42:99:217,0,229 0/1:83,45:128:99:658,0,830 0/0:101,0:101:99:0,123,1429 0/0:97,0:97:99:0,159,1751 0/0:87,1:88:99:0,123,1342 0/1:19,17:36:99:264,0,285 0/1:40,22:62:99:393,0,379 0/0:54,0:54:84.16:0,84,907 0/0:50,0:51:60.09:0,60,629 0/1:31,22:53:99:424,0,298 0/1:48,22:70:99:371,0,241 0/1:31,7:38:97.26:97,0,475 0/0:47,1:48:30.58:0,31,582 0/0:80,0:80:99:0,111,1257 0/1:29,22:51:99:476,0,213 0/1:43,22:65:99:390,0,610 0/1:38,29:67:99:516,0,269 0/1:39,17:56:99:173,0,339 0/0:59,0:59:87.21:0,87,959 0/1:35,18:53:99:262,0,371 0/0:46,0:46:81.15:0,81,871 11 77790653 . T C 4438.70 . AC=63;AF=0.788;AN=80;BaseQRankSum=4.397;DP=164;Dels=0.00;FS=3.126;HRun=0;HaplotypeScore=1.1253;InbreedingCoeff=0.1299;MQ=58.48;MQ0=0;MQRankSum=1.461;QD=29.20;ReadPosRankSum=-0.698 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:76,6,0 1/1:0,5:5:15.05:190,15,0 ./. 1/1:0,3:3:9.03:110,9,0 1/1:0,2:2:6.02:76,6,0 0/1:2,3:5:27.28:111,0,27 1/1:0,2:2:6.02:81,6,0 0/0:6,0:6:18.06:0,18,226 1/1:0,3:3:9.03:108,9,0 0/1:1,3:4:24.09:94,0,24 1/1:0,1:1:3.01:33,3,0 1/1:0,4:4:12.04:153,12,0 1/1:0,2:2:6.02:75,6,0 ./. 0/1:6,4:10:99:123,0,183 1/1:0,3:3:9.03:112,9,0 1/1:0,2:2:6.02:77,6,0 1/1:0,6:6:15.05:186,15,0 0/1:3,2:5:54.52:55,0,87 0/0:1,0:1:3.01:0,3,38 1/1:0,4:5:12.04:149,12,0 1/1:0,3:3:9.03:116,9,0 1/1:0,4:4:12.04:161,12,0 1/1:0,3:3:9.03:114,9,0 1/1:0,4:4:12.04:161,12,0 1/1:0,6:6:18.06:235,18,0 1/1:0,4:4:12.04:151,12,0 1/1:0,1:1:3.01:39,3,0 1/1:0,7:7:21.07:257,21,0 1/1:0,6:6:18.04:210,18,0 1/1:0,7:7:21.06:256,21,0 1/1:0,4:4:9.03:109,9,0 0/1:5,3:8:81.67:82,0,147 0/0:4,0:4:12.04:0,12,145 1/1:0,6:6:18.05:210,18,0 0/1:4,2:6:32.69:33,0,106 0/1:3,4:7:88.99:130,0,89 0/0:1,0:1:3.01:0,3,36 1/1:0,2:2:6.02:75,6,0 0/1:1,2:3:26.22:68,0,26 1/1:0,5:5:15.05:191,15,0 0/1:1,1:2:30.11:31,0,30 11 77790655 . G C 1243.92 . AC=25;AF=0.305;AN=82;BaseQRankSum=-6.940;DP=174;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.0785;InbreedingCoeff=-0.1090;MQ=58.70;MQ0=0;MQRankSum=-0.519;QD=13.09;ReadPosRankSum=0.347 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,76 0/0:5,0:5:15.05:0,15,188 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.03:0,9,121 0/0:3,0:3:9.03:0,9,122 0/1:2,3:5:61.54:106,0,62 0/0:3,0:3:9.03:0,9,118 0/0:7,0:7:21.07:0,21,290 1/1:0,3:3:9.03:104,9,0 0/1:1,3:4:29.55:57,0,30 1/1:0,1:1:3.01:33,3,0 0/1:3,1:4:24.94:25,0,104 1/1:0,2:2:5.99:55,6,0 ./. 0/1:7,4:11:99:112,0,229 0/1:1,3:4:20.47:85,0,20 0/1:1,1:2:30.11:30,0,32 0/1:3,3:6:54.56:55,0,93 0/1:2,2:4:51.63:52,0,58 0/1:1,2:3:30.98:60,0,31 1/1:0,5:5:12.03:137,12,0 0/1:3,1:4:25.76:26,0,103 0/0:4,0:4:12.04:0,12,159 0/0:3,0:3:9.03:0,9,114 0/0:5,0:5:15.05:0,15,189 0/0:6,0:6:18.06:0,18,245 0/1:3,1:4:24.94:25,0,104 0/0:1,0:1:3.01:0,3,39 0/1:3,5:8:89.21:144,0,89 0/1:2,4:6:52.44:114,0,52 0/1:2,5:7:61.91:116,0,62 0/1:2,2:4:27.95:28,0,62 0/0:8,0:8:24.07:0,24,285 0/0:4,0:4:12.04:0,12,153 0/0:6,0:6:18.06:0,18,221 0/1:4,2:6:32.62:33,0,111 0/0:7,0:7:21.06:0,21,250 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,78 0/0:3,0:3:9.03:0,9,114 0/0:5,0:5:15.05:0,15,190 0/1:1,1:2:28.33:28,0,33 11 78277277 . A G 80819.42 . AC=66;AF=0.786;AN=84;BaseQRankSum=16.187;DP=3224;DS;Dels=0.00;FS=10.600;HRun=1;HaplotypeScore=1.0759;InbreedingCoeff=0.1515;MQ=59.46;MQ0=0;MQRankSum=2.541;QD=27.20;ReadPosRankSum=1.023 GT:AD:DP:GQ:PL 0/1:37,23:60:99:533,0,1155 0/0:71,0:71:99:0,211,2471 0/1:31,34:65:99:948,0,914 0/1:73,70:143:99:2081,0,2039 0/0:120,0:120:99:0,352,4232 1/1:0,121:121:99:4502,349,0 0/1:59,48:107:99:1519,0,1718 0/1:59,67:126:99:2177,0,1624 1/1:0,57:57:99:1947,159,0 1/1:0,59:59:99:2027,168,0 1/1:0,65:65:99:2191,181,0 1/1:0,68:68:99:2264,184,0 1/1:0,55:55:99:1886,156,0 1/1:0,52:52:99:1765,144,0 0/1:87,91:178:99:2515,0,2346 1/1:0,56:57:99:1990,165,0 0/1:29,28:57:99:833,0,846 1/1:0,68:68:99:2324,190,0 1/1:0,78:78:99:2801,235,0 1/1:0,69:69:99:2513,202,0 1/1:0,57:57:99:1917,156,0 0/1:36,24:60:99:658,0,991 0/1:60,50:110:99:1536,0,1690 1/1:0,98:98:99:3568,277,0 1/1:0,125:126:99:4634,352,0 1/1:0,115:115:99:4173,316,0 1/1:0,50:50:99:1778,150,0 1/1:0,69:69:99:2392,199,0 1/1:0,62:62:99:2156,178,0 1/1:0,68:68:99:2295,187,0 1/1:0,56:57:99:1805,147,0 1/1:0,67:68:99:2207,178,0 1/1:0,53:53:99:1745,144,0 1/1:0,54:54:99:1902,156,0 1/1:0,57:57:99:1990,162,0 0/1:36,32:68:99:939,0,1060 1/1:1,81:83:99:2673,220,0 1/1:0,71:71:99:2425,199,0 0/1:31,27:58:99:793,0,919 0/1:27,30:57:99:817,0,775 1/1:0,45:45:99:1600,132,0 0/0:62,0:62:99:0,181,2153 11 78277317 . T C 305.87 . AC=11;AF=0.131;AN=84;BaseQRankSum=-19.893;DP=2252;DS;Dels=0.00;FS=107.267;HRun=2;HaplotypeScore=3.6008;InbreedingCoeff=-0.1655;MQ=58.99;MQ0=0;MQRankSum=0.940;QD=0.54;ReadPosRankSum=-3.496 GT:AD:DP:GQ:PL 0/0:25,13:38:29.38:0,29,526 0/0:27,11:38:38.47:0,38,635 0/0:32,19:51:14.77:0,15,622 0/0:63,28:92:99:0,147,1582 0/0:54,32:86:70.85:0,71,1171 0/0:40,32:72:68.48:0,68,953 0/0:56,20:76:95.36:0,95,1312 0/0:74,22:97:96.28:0,96,1722 0/0:27,17:44:19.81:0,20,654 0/1:27,16:43:37.41:37,0,553 0/0:22,22:44:10.76:0,11,510 0/0:36,21:58:40.08:0,40,837 0/0:24,17:41:24.47:0,24,539 0/1:24,17:42:22.82:23,0,518 0/1:69,70:139:99:150,0,1330 0/0:27,13:40:41.45:0,41,672 0/0:32,16:48:1.66:3,0,709 0/0:24,12:37:45.10:0,45,482 0/1:18,20:38:33.69:34,0,422 0/0:41,14:55:47.74:0,48,831 0/1:27,17:44:22.15:22,0,633 0/1:24,18:43:4.06:4,0,468 0/0:56,33:89:43.30:0,43,1162 0/0:48,19:67:90.14:0,90,989 0/0:49,26:75:49.79:0,50,952 0/0:51,20:71:77.52:0,78,1076 0/0:20,11:31:14.40:0,14,393 0/0:35,23:59:5.31:0,5,789 0/0:26,9:35:72.15:0,72,768 0/0:28,18:46:42.31:0,42,713 0/0:21,24:46:24.39:0,24,474 0/0:50,12:62:33.04:0,33,879 0/1:20,15:35:34.80:35,0,313 0/1:23,14:37:20.72:21,0,524 0/1:29,18:47:9.88:10,0,574 0/0:27,11:38:61.97:0,62,680 0/1:27,24:51:33.32:33,0,727 0/1:30,21:52:68:68,0,480 0/0:31,19:50:60.12:0,60,638 0/0:21,15:36:27.42:0,27,498 0/0:13,11:24:30.03:0,30,308 0/0:21,14:35:4.82:0,5,521 11 78279790 . T G 106820.43 . AC=66;AF=0.786;AN=84;BaseQRankSum=5.163;DP=4374;DS;Dels=0.00;FS=3.403;HRun=0;HaplotypeScore=1.1842;InbreedingCoeff=0.1515;MQ=59.62;MQ0=0;MQRankSum=0.754;QD=26.61;ReadPosRankSum=-0.192 GT:AD:DP:GQ:PL 0/1:54,34:88:99:876,0,1557 0/0:89,0:89:99:0,235,2947 0/1:35,43:78:99:1288,0,1040 0/1:94,78:172:99:2303,0,2777 0/0:178,0:178:99:0,476,6203 1/1:0,181:181:99:6517,488,0 0/1:92,73:165:99:2191,0,2816 0/1:92,78:170:99:2410,0,2839 1/1:0,79:79:99:2769,226,0 1/1:0,84:84:99:2882,232,0 1/1:1,80:82:99:2596,179,0 1/1:0,84:84:99:2914,235,0 1/1:0,63:63:99:2240,184,0 1/1:0,90:90:99:2901,232,0 0/1:105,106:211:99:2913,0,2979 1/1:0,59:60:99:2010,165,0 0/1:44,46:90:99:1330,0,1298 1/1:0,79:79:99:2704,220,0 1/1:0,97:97:99:3182,253,0 1/1:0,109:109:99:3697,292,0 1/1:0,91:92:99:3020,244,0 0/1:43,23:66:99:582,0,1340 0/1:84,86:170:99:2665,0,2550 1/1:0,150:150:99:5348,394,0 1/1:0,159:159:99:5597,409,0 1/1:0,184:184:99:6641,494,0 1/1:0,58:58:99:1910,150,0 1/1:0,82:82:99:2692,220,0 1/1:0,72:72:99:2473,199,0 1/1:0,70:70:99:2399,193,0 1/1:1,74:75:99:2567,177,0 1/1:0,85:85:99:2774,220,0 1/1:0,66:66:99:2307,187,0 1/1:0,83:83:99:2756,220,0 1/1:0,78:78:99:2735,220,0 0/1:44,52:96:99:1575,0,1262 1/1:0,93:93:99:3021,244,0 1/1:0,89:89:99:2855,229,0 0/1:49,50:99:99:1422,0,1280 0/1:46,44:90:99:1281,0,1381 1/1:0,75:75:99:2478,202,0 0/0:93,0:93:99:0,259,3189 11 78387298 . T G 159.11 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.833;DP=732;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4983;InbreedingCoeff=-0.0261;MQ=58.06;MQ0=0;MQRankSum=0.142;QD=5.49;ReadPosRankSum=-0.056 GT:AD:DP:GQ:PL 0/0:11,0:11:33.10:0,33,387 0/0:8,0:8:18.06:0,18,225 0/0:20,0:20:57.17:0,57,677 0/0:39,0:39:99:0,114,1360 0/0:26,0:26:75.23:0,75,907 0/0:25,0:25:72.22:0,72,897 0/0:19,0:19:51.16:0,51,641 0/0:24,0:24:69.21:0,69,832 0/0:16,0:16:42.13:0,42,503 0/0:15,0:15:39.12:0,39,471 0/0:16,0:16:45.14:0,45,542 0/0:7,0:7:21.06:0,21,243 0/0:11,0:11:30.09:0,30,368 0/0:14,0:14:39.11:0,39,450 0/0:31,0:31:84.25:0,84,1018 0/0:15,0:15:45.13:0,45,525 0/0:18,0:18:54.16:0,54,644 0/0:4,0:4:12.04:0,12,144 0/0:28,0:28:84.22:0,84,988 0/0:29,0:29:69.21:0,69,867 0/0:16,0:16:45.14:0,45,545 0/0:21,0:21:63.15:0,63,717 0/0:42,0:42:99:0,123,1459 0/0:14,0:14:42.13:0,42,509 0/0:21,0:21:60.19:0,60,740 0/0:16,0:16:45.14:0,45,542 0/0:12,0:12:36.09:0,36,424 0/0:11,0:11:33.10:0,33,391 0/0:14,0:14:36.11:0,36,431 0/0:14,0:14:39.11:0,39,452 0/0:16,0:16:45.14:0,45,537 0/0:32,1:34:87.25:0,87,1038 0/0:17,0:17:48.14:0,48,567 0/0:7,0:7:18.04:0,18,207 0/0:10,0:10:30.09:0,30,361 0/0:16,0:17:42.11:0,42,486 0/1:17,6:23:99:126,0,524 0/1:3,3:6:87.61:95,0,88 0/0:11,0:11:30.08:0,30,344 0/0:8,0:9:15.05:0,15,193 0/0:11,0:11:33.10:0,33,395 0/0:14,0:14:42.12:0,42,487 11 78387356 . C T 756.13 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.200;DP=882;Dels=0.00;FS=5.369;HRun=0;HaplotypeScore=0.7575;InbreedingCoeff=-0.0123;MQ=58.91;MQ0=0;MQRankSum=0.423;QD=15.43;ReadPosRankSum=0.450 GT:AD:DP:GQ:PL 0/0:13,0:13:36.10:0,36,422 0/0:13,0:13:36.10:0,36,436 0/0:12,0:12:33.09:0,33,384 0/0:77,0:77:99:0,226,2864 0/0:53,0:53:99:0,153,1988 0/0:28,0:28:75.23:0,75,972 0/0:22,0:22:60.18:0,60,771 0/0:35,0:35:99:0,99,1241 0/0:17,0:17:48.13:0,48,567 0/0:21,0:21:54.16:0,54,653 0/0:14,0:14:39.11:0,39,472 0/0:11,0:11:30.10:0,30,377 0/0:11,0:11:33.09:0,33,389 0/0:11,0:12:27.08:0,27,320 0/0:46,0:46:99:0,123,1455 0/0:21,0:21:63.18:0,63,743 0/0:19,0:19:57.15:0,57,679 0/0:15,0:15:45.13:0,45,535 0/0:24,0:24:69.20:0,69,831 0/0:30,0:30:81.22:0,81,935 0/0:24,0:24:72.21:0,72,869 0/0:14,0:14:36.10:0,36,444 0/1:22,27:49:99:802,0,670 0/0:20,0:20:54.16:0,54,692 0/0:30,0:30:87.25:0,87,1094 0/0:24,0:24:72.23:0,72,948 0/0:10,0:10:30.08:0,30,353 0/0:9,0:9:24.06:0,24,272 0/0:13,0:13:33.09:0,33,379 0/0:14,0:14:42.12:0,42,500 0/0:15,0:15:39.11:0,39,472 0/0:24,0:24:69.17:0,69,784 0/0:19,0:19:57.16:0,57,685 0/0:16,0:16:48.14:0,48,576 0/0:14,0:14:39.11:0,39,464 0/0:9,0:9:24.07:0,24,283 0/0:15,0:16:33.09:0,33,370 0/0:11,0:11:30.09:0,30,365 0/0:13,0:13:30.08:0,30,354 0/0:14,0:14:42.12:0,42,508 0/0:14,0:14:42.11:0,42,480 0/0:16,0:16:48.11:0,48,556 11 78399121 . G A 41926.29 . AC=20;AF=0.238;AN=84;BaseQRankSum=20.936;DP=5471;DS;Dels=0.00;FS=2.322;HRun=0;HaplotypeScore=2.5666;InbreedingCoeff=0.3438;MQ=59.46;MQ0=0;MQRankSum=1.862;QD=21.24;ReadPosRankSum=1.232 GT:AD:DP:GQ:PL 0/1:40,46:86:99:1319,0,999 1/1:0,86:87:99:2976,247,0 0/1:53,47:100:99:1373,0,1411 0/0:225,0:226:99:0,587,7254 0/0:205,0:206:99:0,560,6972 1/1:0,145:145:99:4955,391,0 1/1:0,121:122:99:4217,334,0 0/1:79,80:160:99:2205,0,2125 0/0:88,0:88:99:0,244,2766 0/0:85,0:85:99:0,235,2660 0/0:87,1:88:99:0,212,2740 0/0:100,0:100:99:0,283,3119 0/0:87,0:87:99:0,241,2708 0/0:91,0:91:99:0,253,2858 1/1:3,246:250:99:8028,647,0 1/1:0,105:105:99:3595,301,0 0/1:43,54:99:99:1568,0,999 0/1:63,35:98:99:906,0,1544 0/1:86,107:193:99:2992,0,2166 0/0:219,0:220:99:0,587,6714 0/0:224,0:228:99:0,596,6814 0/0:147,0:147:99:0,391,4342 0/1:102,117:219:99:3285,0,2847 0/0:132,0:133:99:0,340,4219 0/0:165,0:166:99:0,448,5491 0/0:139,0:139:99:0,364,4570 0/0:75,0:75:99:0,186,2160 0/1:51,53:104:99:1455,0,1267 0/0:82,0:82:99:0,217,2471 0/0:92,0:94:99:0,262,2921 0/0:90,0:90:99:0,256,2871 0/0:186,0:186:99:0,484,5604 0/0:154,0:155:99:0,415,4698 0/1:50,50:100:99:1388,0,1244 0/1:48,58:106:99:1663,0,1170 0/0:116,2:118:99:0,236,3444 0/0:197,0:200:99:0,514,5882 0/0:84,1:85:99:0,238,2614 0/0:100,1:101:99:0,251,3106 0/0:107,1:108:99:0,254,3181 0/0:84,0:84:99:0,232,2547 0/0:113,1:114:99:0,282,3484 11 78443586 . G A 8785.60 . 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C T 810.36 . 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T G 276.83 . 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A G 12330.79 . 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C T 1489 . 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T G 18015.92 . 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G A 360.48 . 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G A 5089.62 . 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C T 69789.17 . 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C T 6776.70 . 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T G 1889.49 . 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T C 37390.51 . 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C T 345.25 . 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T C 97409.92 . AC=53;AF=0.631;AN=84;BaseQRankSum=19.456;DP=4583;DS;Dels=0.00;FS=0.475;HRun=1;HaplotypeScore=2.0293;InbreedingCoeff=-0.1759;MQ=59.54;MQ0=0;MQRankSum=-0.830;QD=22.84;ReadPosRankSum=-3.626 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1953,153,0 0/1:40,33:73:99:986,0,1253 0/0:57,0:57:99:0,165,2017 0/1:90,103:193:99:3334,0,2686 0/1:105,101:206:99:3363,0,3201 0/1:107,89:196:99:2793,0,3273 1/1:0,153:153:99:5895,439,0 0/1:99,89:188:99:2886,0,3001 1/1:0,60:60:99:2248,178,0 1/1:0,66:66:99:2343,187,0 0/1:37,34:71:99:1035,0,1076 0/1:32,18:50:99:443,0,1007 0/0:67,1:68:99:0,148,2219 1/1:0,65:66:99:2345,184,0 0/1:94,95:189:99:2699,0,2644 1/1:0,83:83:99:2959,232,0 0/1:47,37:84:99:1127,0,1352 1/1:0,74:75:99:2679,211,0 1/1:1,143:144:99:4964,397,0 0/1:87,97:184:99:2860,0,2488 1/1:1,146:147:99:5043,397,0 0/1:46,58:104:99:1778,0,1304 1/1:0,196:196:99:7274,542,0 1/1:0,160:160:99:6156,460,0 0/1:111,94:206:99:2923,0,3460 0/1:80,73:154:99:2353,0,2399 0/1:28,25:53:99:725,0,856 0/1:49,36:86:99:1131,0,1484 0/1:37,33:70:99:988,0,1011 0/1:31,44:75:99:1336,0,919 0/1:35,28:63:99:779,0,1055 0/1:82,79:161:99:2428,0,2151 0/0:113,1:114:99:0,275,3791 0/1:34,37:71:99:1153,0,1029 1/1:0,88:88:99:3067,241,0 0/0:80,0:80:99:0,223,2764 1/1:0,138:138:99:4729,370,0 1/1:0,73:73:99:2645,211,0 0/1:39,43:82:99:1264,0,1152 0/1:31,36:67:99:1048,0,921 0/1:28,26:54:99:819,0,837 1/1:0,80:80:99:2858,226,0 11 85576206 . G A 1779.63 . 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G A 5670.74 . 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A G 2692.17 . AC=4;AF=0.048;AN=84;BaseQRankSum=11.143;DP=1770;Dels=0.00;FS=2.363;HRun=1;HaplotypeScore=0.3053;InbreedingCoeff=-0.0500;MQ=59.29;MQ0=0;MQRankSum=0.278;QD=14.32;ReadPosRankSum=-0.308 GT:AD:DP:GQ:PL 0/0:33,0:33:81.25:0,81,1007 0/0:42,0:42:99:0,102,1294 0/0:34,0:34:81.25:0,81,1016 0/0:48,0:48:99:0,120,1496 0/0:78,0:78:99:0,178,2308 0/0:75,0:75:99:0,184,2400 0/0:81,0:81:99:0,205,2615 0/0:56,0:56:99:0,153,1918 0/1:28,26:54:99:716,0,728 0/0:34,0:34:90.27:0,90,1091 0/1:12,22:34:99:660,0,290 0/0:37,0:38:90.26:0,90,1110 0/0:33,0:33:84.26:0,84,1042 0/0:29,0:29:75.23:0,75,936 0/0:107,0:107:99:0,250,3152 0/0:24,0:24:60.18:0,60,738 0/0:32,0:32:84.24:0,84,1016 0/0:29,0:29:75.23:0,75,937 0/0:32,0:32:81.24:0,81,1000 0/0:28,0:28:75.23:0,75,928 0/0:33,0:34:87.27:0,87,1072 0/0:33,0:33:93.24:0,93,1094 0/0:82,0:82:99:0,196,2489 0/0:62,0:62:99:0,156,1960 0/1:25,31:56:99:857,0,612 0/1:25,19:44:99:545,0,748 0/0:19,1:20:51.16:0,51,624 0/0:40,0:40:99:0,108,1336 0/0:35,0:35:75.23:0,75,979 0/0:34,0:34:84.25:0,84,1037 0/0:28,0:28:78.24:0,78,941 0/0:45,0:45:99:0,102,1314 0/0:38,0:38:96.29:0,96,1187 0/0:35,0:35:96.28:0,96,1168 0/0:37,0:37:93.27:0,93,1151 0/0:31,0:31:81.24:0,81,985 0/0:42,0:42:99:0,99,1256 0/0:26,0:26:72.22:0,72,880 0/0:22,0:22:66.18:0,66,773 0/0:34,0:34:93.27:0,93,1122 0/0:35,0:35:93.28:0,93,1135 0/0:34,0:34:93.27:0,93,1120 11 85627108 . T C 59689.25 . AC=28;AF=0.333;AN=84;BaseQRankSum=50.667;DP=6044;DS;Dels=0.00;FS=7.237;HRun=0;HaplotypeScore=1.5643;InbreedingCoeff=-0.0714;MQ=59.58;MQ0=0;MQRankSum=-0.864;QD=17.96;ReadPosRankSum=0.377 GT:AD:DP:GQ:PL 0/0:136,0:136:99:0,385,4551 0/0:154,0:154:99:0,403,4837 0/0:132,0:132:99:0,343,4133 0/0:190,2:192:99:0,437,5774 0/0:175,0:175:99:0,457,5586 0/1:81,98:179:99:2884,0,2172 1/1:0,145:145:99:5022,364,0 0/1:74,79:153:99:2486,0,1912 0/0:114,0:114:99:0,298,3584 0/1:57,48:105:99:1320,0,1586 0/0:135,0:135:99:0,370,4394 1/1:0,148:148:99:5123,403,0 0/1:51,71:122:99:2053,0,1320 0/1:49,52:101:99:1434,0,1343 0/0:250,0:250:99:0,677,7990 0/0:84,0:85:99:0,229,2679 0/1:68,71:139:99:2009,0,1850 0/1:66,55:121:99:1640,0,1790 0/0:194,0:194:99:0,499,6083 0/0:187,0:187:99:0,475,5823 0/1:80,78:158:99:2121,0,2078 0/1:55,59:115:99:1665,0,1404 0/1:106,108:214:99:3297,0,2739 0/1:73,87:160:99:2664,0,1889 0/1:96,60:156:99:1823,0,2614 0/0:174,1:177:99:0,406,5391 0/1:47,50:97:99:1352,0,1254 0/0:116,0:116:99:0,304,3677 0/1:55,59:114:99:1675,0,1502 0/1:68,63:131:99:1810,0,1851 0/0:112,0:112:99:0,295,3600 0/0:165,0:165:99:0,436,5304 0/1:66,52:118:99:1482,0,1831 0/1:66,48:114:99:1357,0,1785 1/1:1,127:129:99:4203,299,0 0/0:164,0:164:99:0,427,5158 1/1:0,201:201:99:6536,503,0 0/1:72,60:132:99:1650,0,1790 0/1:73,78:151:99:2225,0,1987 0/0:128,1:129:99:0,318,4042 0/0:102,1:103:99:0,233,3194 0/1:58,63:121:99:1859,0,1576 11 85692181 . A C 40184.56 . AC=46;AF=0.548;AN=84;BaseQRankSum=8.135;DP=3088;Dels=0.00;FS=10.559;HRun=1;HaplotypeScore=0.9637;InbreedingCoeff=-0.1533;MQ=59.54;MQ0=1;MQRankSum=1.350;QD=16.49;ReadPosRankSum=-1.872 GT:AD:DP:GQ:PL 0/0:59,1:60:99:0,130,1972 0/1:32,13:45:99:318,0,922 1/1:1,44:45:89.02:1484,89,0 0/1:102,82:184:99:2391,0,2995 0/1:89,60:149:99:1794,0,2782 0/1:97,78:175:99:2281,0,2760 0/0:144,0:144:99:0,382,4938 0/1:78,65:143:99:1888,0,2207 1/1:0,33:34:90.27:1123,90,0 0/1:33,20:53:99:590,0,953 0/1:29,20:49:99:539,0,812 0/1:29,20:49:99:512,0,840 1/1:0,37:37:99:1268,99,0 0/1:15,15:30:99:408,0,448 0/1:122,86:208:99:2266,0,3246 1/1:0,25:25:72.23:912,72,0 0/0:64,0:64:99:0,178,2172 0/0:53,0:53:99:0,141,1801 0/1:42,29:71:99:669,0,1054 1/1:0,49:50:99:1691,135,0 0/1:39,17:56:99:465,0,1129 0/1:17,17:34:99:462,0,476 0/0:217,1:218:99:0,521,7156 0/1:79,57:136:99:1707,0,2288 0/1:90,60:150:99:1751,0,2580 1/1:0,107:107:99:3621,274,0 0/1:14,9:23:99:235,0,391 1/1:0,51:51:99:1808,147,0 0/0:49,1:50:99:0,107,1662 1/1:0,44:45:99:1432,117,0 0/1:26,15:41:99:403,0,743 0/1:35,22:57:99:613,0,959 0/1:21,17:38:99:425,0,614 1/1:0,44:44:99:1472,120,0 0/1:19,17:36:99:446,0,518 1/1:0,45:45:99:1595,129,0 0/0:62,0:62:99:0,150,1903 0/1:26,22:48:99:563,0,771 0/1:24,17:41:99:500,0,712 1/1:0,43:43:99:1591,129,0 0/1:24,20:44:99:492,0,741 0/1:33,18:51:99:471,0,1044 11 85711727 . T G 8361.80 . AC=42;AF=0.500;AN=84;BaseQRankSum=-29.091;DP=2599;Dels=0.00;FS=1899.872;HRun=2;HaplotypeScore=1.8958;InbreedingCoeff=-0.9998;MQ=58.76;MQ0=0;MQRankSum=0.394;QD=3.22;ReadPosRankSum=-20.052 GT:AD:DP:GQ:PL 0/1:25,31:56:99:165,0,646 0/1:37,29:66:39.36:39,0,1098 0/1:26,21:47:99:151,0,822 0/1:45,46:91:99:99,0,1278 0/1:33,46:79:99:409,0,965 0/1:31,50:81:99:362,0,956 0/1:27,36:63:99:290,0,828 0/1:27,43:70:99:330,0,804 0/1:32,32:64:99:258,0,935 0/1:21,26:48:99:189,0,604 0/1:29,26:55:99:114,0,837 0/1:25,22:47:92.42:92,0,640 0/1:23,23:46:99:243,0,695 0/1:17,24:41:48.25:48,0,541 0/1:77,65:143:99:299,0,2100 0/1:21,23:44:99:158,0,639 0/1:23,28:51:99:121,0,665 0/1:14,26:40:99:153,0,355 0/1:31,48:79:99:429,0,793 0/1:43,55:98:99:288,0,1278 0/1:39,43:82:99:437,0,987 0/1:22,27:49:99:201,0,587 0/1:32,51:83:99:411,0,955 0/1:33,37:70:99:176,0,957 0/1:31,45:76:99:253,0,883 0/1:32,29:61:93.04:93,0,915 0/1:24,22:46:99:196,0,568 0/1:30,19:49:99:111,0,928 0/1:15,31:46:99:259,0,433 0/1:26,20:46:99:100,0,792 0/1:18,26:44:99:123,0,501 0/1:40,52:93:77.39:77,0,1094 0/1:24,27:52:99:319,0,642 0/1:25,23:48:99:101,0,765 0/1:20,21:41:99:111,0,564 0/1:32,34:66:99:269,0,922 0/1:31,40:71:99:134,0,853 0/1:27,22:50:99:162,0,821 0/1:27,26:53:78.15:78,0,857 0/1:29,30:60:99:339,0,822 0/1:26,25:51:99:151,0,695 0/1:36,17:53:23.33:23,0,1167 11 85711729 . C G 13.06 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.513;DP=2207;Dels=0.00;FS=180.435;HRun=1;HaplotypeScore=1.9446;InbreedingCoeff=-0.0253;MQ=58.57;MQ0=0;MQRankSum=1.430;QD=0.10;ReadPosRankSum=-8.115 GT:AD:DP:GQ:PL 0/0:37,6:43:87.25:0,87,1051 0/0:49,7:56:99:0,107,1315 0/0:35,9:44:81.26:0,81,1024 0/0:66,13:79:99:0,144,1928 0/0:52,15:67:80.92:0,81,1437 0/0:58,15:73:39.15:0,39,1176 0/0:44,6:50:93.30:0,93,1262 0/0:49,11:60:99:0,105,1352 0/0:45,10:55:99:0,102,1273 0/0:34,6:40:66.21:0,66,827 0/0:39,9:48:67.96:0,68,1189 0/0:32,6:38:72.23:0,72,907 0/0:32,10:42:46.45:0,46,962 0/0:28,5:33:27.94:0,28,712 0/0:102,22:124:99:0,167,3114 0/0:32,3:35:66.20:0,66,825 0/0:32,9:41:11.04:0,11,745 0/0:22,6:28:42.13:0,42,533 0/1:51,15:67:36.23:36,0,1114 0/0:72,8:80:99:0,144,1782 0/1:52,16:68:38.92:39,0,1435 0/0:32,6:38:43.66:0,44,836 0/0:53,17:71:82.71:0,83,1429 0/0:53,10:63:99:0,105,1391 0/0:44,14:58:54.16:0,54,1146 0/0:50,4:54:99:0,108,1465 0/0:31,6:38:63.17:0,63,789 0/0:38,8:46:96.29:0,96,1181 0/0:30,9:40:57.18:0,57,711 0/0:37,6:43:90.27:0,90,1112 0/0:28,8:36:57.17:0,57,700 0/0:66,6:72:99:0,126,1584 0/0:41,9:50:87.24:0,87,1072 0/0:34,6:40:78.24:0,78,968 0/0:28,5:33:41.62:0,42,825 0/0:48,13:61:60.72:0,61,1310 0/0:46,13:59:79.20:0,79,1229 0/0:40,6:46:93.29:0,93,1163 0/0:35,7:42:84.23:0,84,1044 0/0:40,10:50:28.14:0,28,989 0/0:39,3:42:87.26:0,87,1068 0/0:48,6:54:99:0,120,1496 11 85968623 . C T 14151.42 . AC=27;AF=0.321;AN=84;BaseQRankSum=-13.547;DP=1803;Dels=0.00;FS=5.498;HRun=1;HaplotypeScore=0.3722;InbreedingCoeff=0.0721;MQ=59.37;MQ0=0;MQRankSum=0.392;QD=16.46;ReadPosRankSum=-2.349 GT:AD:DP:GQ:PL 1/1:1,34:35:54.72:1099,55,0 1/1:1,32:33:57.73:1122,58,0 1/1:0,25:25:66.21:849,66,0 0/0:88,0:88:99:0,223,3080 0/0:86,0:86:99:0,226,3134 0/1:44,26:70:99:774,0,1428 0/0:70,2:72:99:0,142,2504 0/1:37,18:55:99:502,0,1160 0/1:29,13:42:99:306,0,823 0/1:18,15:33:99:436,0,543 1/1:0,34:34:99:1236,99,0 0/0:35,0:35:99:0,99,1275 0/0:27,0:27:69.22:0,69,913 0/1:23,13:36:99:375,0,599 0/0:105,0:105:99:0,256,3389 0/0:26,0:26:75.24:0,75,964 0/0:38,0:38:99:0,99,1278 0/0:33,0:33:99:0,99,1270 0/0:37,0:37:99:0,99,1266 0/0:36,0:36:84.27:0,84,1111 0/1:17,14:31:99:391,0,405 0/0:22,0:22:57.18:0,57,747 0/0:104,2:106:99:0,241,3871 1/1:0,63:63:99:2263,172,0 0/1:42,30:72:99:854,0,1316 0/1:39,26:65:99:752,0,1192 0/0:28,0:28:78.25:0,78,1016 0/1:15,19:34:99:583,0,423 0/1:11,7:18:99:197,0,339 0/1:18,14:32:99:430,0,524 0/1:15,11:26:99:332,0,463 0/1:22,15:37:99:355,0,667 0/0:36,0:36:84.27:0,84,1119 0/1:16,11:27:99:341,0,478 0/1:20,8:28:99:196,0,656 0/0:38,0:38:99:0,105,1376 0/0:30,0:30:72.22:0,72,930 0/0:34,0:34:87.28:0,87,1148 0/1:19,16:35:99:389,0,561 0/0:31,1:32:50.30:0,50,1042 0/1:16,13:29:99:369,0,500 0/0:33,1:34:58.52:0,59,1180 11 86098680 . T C 114667.53 . AC=45;AF=0.536;AN=84;BaseQRankSum=39.632;DP=6394;DS;Dels=0.00;FS=3.563;HRun=1;HaplotypeScore=2.2977;InbreedingCoeff=0.0906;MQ=59.57;MQ0=0;MQRankSum=0.748;QD=23.24;ReadPosRankSum=0.712 GT:AD:DP:GQ:PL 0/1:65,63:128:99:1966,0,1805 1/1:0,120:120:99:4005,313,0 1/1:0,99:99:99:3408,268,0 0/1:116,106:222:99:3303,0,3390 0/1:125,95:220:99:3110,0,3737 0/1:111,122:233:99:3868,0,3373 0/0:234,0:234:99:0,662,8360 0/1:127,110:237:99:3267,0,3819 0/1:67,59:126:99:1646,0,1959 0/0:106,0:106:99:0,301,3682 1/1:0,114:114:99:4056,313,0 0/0:118,1:119:99:0,298,4083 0/0:128,1:129:99:0,319,4284 0/0:122,0:122:99:0,340,4206 0/1:142,100:242:99:2983,0,3955 1/1:0,105:105:99:3678,286,0 0/1:72,57:129:99:1519,0,2221 0/0:109,0:109:99:0,298,3685 0/0:179,0:179:99:0,487,5997 0/0:224,0:224:99:0,584,7359 1/1:0,200:200:99:6877,554,0 0/1:53,48:101:99:1398,0,1517 1/1:0,207:208:99:7891,581,0 1/1:1,211:212:99:7866,550,0 1/1:0,234:235:99:8514,632,0 1/1:0,229:229:99:8129,602,0 0/1:40,43:83:99:1297,0,1111 1/1:0,135:135:99:4775,379,0 0/1:52,60:112:99:1798,0,1515 0/1:68,50:118:99:1402,0,2105 1/1:1,117:118:99:4142,325,0 1/1:0,196:197:99:6875,536,0 0/0:110,0:110:99:0,304,3733 0/1:64,76:140:99:2160,0,1814 0/1:51,51:102:99:1484,0,1426 0/0:127,0:127:99:0,358,4395 0/1:90,72:162:99:1961,0,2641 0/1:63,81:144:99:2440,0,1709 0/1:65,65:130:99:1929,0,1795 0/1:59,60:119:99:1750,0,1820 1/1:2,94:97:99:3140,184,0 0/1:52,66:118:99:2033,0,1399 11 86118683 . C A 602.32 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.920;DP=1653;Dels=0.00;FS=0.869;HRun=1;HaplotypeScore=0.5609;InbreedingCoeff=-0.0244;MQ=59.35;MQ0=0;MQRankSum=0.321;QD=12.82;ReadPosRankSum=-0.833 GT:AD:DP:GQ:PL 0/0:33,0:33:81.23:0,81,989 0/0:32,0:32:81.24:0,81,974 0/0:36,0:36:96.28:0,96,1157 0/0:56,0:56:99:0,153,1970 0/0:61,0:61:99:0,153,2013 0/0:44,0:44:99:0,111,1482 0/0:40,0:40:99:0,102,1362 0/0:69,0:69:99:0,166,2224 0/0:35,0:35:96.28:0,96,1154 0/0:35,0:35:93.26:0,93,1095 0/0:28,0:28:69.21:0,69,865 0/0:23,0:23:60.18:0,60,732 0/0:33,0:33:93.27:0,93,1127 0/0:32,0:32:81.22:0,81,993 0/0:119,0:119:99:0,298,3625 0/0:23,0:23:69.19:0,69,815 0/0:34,0:34:96.25:0,96,1138 0/0:47,0:47:99:0,129,1534 0/0:44,0:44:99:0,117,1419 0/0:45,0:45:99:0,120,1449 0/0:41,0:41:99:0,105,1273 0/0:22,0:22:60.14:0,60,706 0/0:65,0:65:99:0,175,2308 0/0:58,0:58:99:0,153,2007 0/0:51,0:51:99:0,123,1664 0/0:47,0:47:99:0,120,1597 0/0:20,0:20:51.14:0,51,625 0/0:43,0:43:99:0,117,1391 0/0:33,0:33:87.24:0,87,1040 0/0:29,0:29:78.23:0,78,943 0/1:12,16:28:99:517,0,320 0/0:42,0:42:99:0,117,1399 0/0:29,0:29:78.23:0,78,947 0/0:26,0:26:72.19:0,72,849 0/0:17,0:18:48.11:0,48,544 0/0:45,0:45:99:0,123,1475 0/0:38,0:38:99:0,99,1195 0/0:33,0:33:87.25:0,87,1044 0/1:12,7:19:99:148,0,364 0/0:32,0:32:90.24:0,90,1051 0/0:33,0:33:90.27:0,90,1092 0/0:32,0:32:90.26:0,90,1091 11 86267633 . C T 6974.55 . 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G A 12838.61 . 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C A 11252.31 . 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G A 2658.28 . 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A G 166363.32 . 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G A 879.11 . AC=3;AF=0.036;AN=84;BaseQRankSum=-0.464;DP=2242;Dels=0.00;FS=13.905;HRun=0;HaplotypeScore=0.6516;InbreedingCoeff=-0.0370;MQ=26.58;MQ0=557;MQRankSum=0.539;QD=6.92;ReadPosRankSum=-0.604 GT:AD:DP:GQ:PL 0/0:37,0:37:60.15:0,60,703 0/0:44,0:44:51.10:0,51,559 0/0:23,0:23:33.05:0,33,349 0/0:102,0:102:99:0,150,1707 0/0:79,0:79:99:0,165,2019 0/0:83,0:83:99:0,156,1806 0/0:64,0:64:99:0,105,1187 0/0:69,0:69:99:0,111,1295 0/0:38,0:38:69.13:0,69,732 0/0:33,0:33:42.08:0,42,448 0/0:33,0:33:48.11:0,48,547 0/0:57,0:57:87.15:0,87,916 0/0:36,0:36:63.13:0,63,683 0/0:42,0:42:54.14:0,54,657 0/0:167,0:167:99:0,256,2909 0/0:30,0:30:54.13:0,54,612 0/0:40,0:40:57.12:0,57,634 0/0:35,0:35:45.08:0,45,480 0/0:51,0:51:87.20:0,87,985 0/0:46,0:46:72.17:0,72,808 0/0:67,0:67:99:0,123,1371 0/0:28,0:28:57.11:0,57,614 0/0:106,0:106:99:0,192,2197 0/0:70,0:70:90.20:0,90,1021 0/0:81,0:81:99:0,147,1708 0/0:55,0:55:72.17:0,72,827 0/0:29,0:29:48.11:0,48,530 0/1:33,12:46:99:212,0,364 0/0:43,0:43:66.16:0,66,758 0/1:28,26:55:99:590,0,283 0/0:43,0:43:60.13:0,60,659 0/0:60,0:60:81.17:0,81,892 0/1:15,11:26:99:153,0,284 0/0:30,0:30:45.09:0,45,479 0/0:44,0:44:87.17:0,87,967 0/0:62,0:63:54.12:0,54,615 0/0:47,0:47:60.13:0,60,676 0/0:42,0:42:72.15:0,72,808 0/0:50,0:50:93.19:0,93,1034 0/0:54,0:54:54.12:0,54,612 0/0:48,0:48:63.13:0,63,688 0/0:46,0:46:81.16:0,81,865 11 89182686 . T C 845.26 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.941;DP=2280;Dels=0.00;FS=7.568;HRun=1;HaplotypeScore=0.7511;InbreedingCoeff=-0.0120;MQ=59.46;MQ0=0;MQRankSum=0.035;QD=18.78;ReadPosRankSum=-0.542 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,138,1753 0/0:49,1:50:99:0,132,1668 0/0:41,0:41:99:0,111,1417 0/0:91,0:91:99:0,235,3087 0/0:87,0:87:99:0,211,2837 0/0:78,0:78:99:0,190,2583 0/0:66,0:66:99:0,181,2396 0/0:78,0:78:99:0,190,2556 0/0:29,0:29:81.24:0,81,996 0/0:49,0:49:99:0,132,1662 0/0:40,0:40:99:0,108,1382 0/0:42,0:42:99:0,117,1475 0/0:41,0:41:99:0,117,1466 0/0:30,0:30:84.26:0,84,1058 0/0:143,0:143:99:0,346,4454 0/0:33,0:33:87.27:0,87,1094 0/0:43,0:43:99:0,117,1485 0/0:39,0:39:99:0,114,1423 0/0:67,0:67:99:0,169,2162 0/0:67,0:67:99:0,159,2056 0/0:52,0:52:99:0,135,1709 0/0:41,0:41:99:0,114,1447 0/0:98,0:98:99:0,253,3350 0/0:75,0:75:99:0,181,2419 0/0:76,0:76:99:0,211,2794 0/0:69,0:69:99:0,196,2540 0/0:30,0:30:87.27:0,87,1098 0/0:50,0:50:99:0,138,1754 0/0:36,0:36:99:0,102,1260 0/0:48,0:48:99:0,129,1620 0/0:43,0:43:99:0,114,1438 0/0:51,0:51:99:0,129,1672 0/0:36,0:36:99:0,99,1246 0/0:39,0:39:99:0,105,1351 0/0:32,0:33:90.29:0,90,1145 0/0:52,0:52:99:0,138,1770 0/0:50,1:51:99:0,103,1622 0/0:62,0:62:99:0,160,2048 0/0:40,0:40:99:0,117,1464 0/0:40,0:40:99:0,114,1431 0/1:14,31:45:99:891,0,379 0/0:48,0:48:99:0,123,1575 11 89935586 . G T 49064.85 . 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T G 95.15 . 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C T 3446.90 . 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G A 28911.90 . 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T A 35271.95 . 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T C 97549.93 . 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G A 146414.20 . 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G A 11016.38 . 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G A 11278.98 . AC=8;AF=0.095;AN=84;BaseQRankSum=-23.609;DP=4503;DS;Dels=0.00;FS=5.566;HRun=1;HaplotypeScore=1.8650;InbreedingCoeff=-0.1053;MQ=57.41;MQ0=0;MQRankSum=3.873;QD=13.75;ReadPosRankSum=2.210 GT:AD:DP:GQ:PL 0/0:89,0:89:99:0,238,2978 0/0:85,0:85:99:0,235,2921 0/0:92,0:92:99:0,247,3125 0/0:177,0:177:99:0,481,6298 0/0:184,0:184:99:0,494,6635 0/0:174,0:174:99:0,457,6124 0/0:138,0:138:99:0,379,5099 0/0:153,0:153:99:0,412,5485 0/0:83,0:83:99:0,220,2813 0/0:81,0:81:99:0,214,2734 0/0:75,0:75:99:0,217,2669 0/0:90,0:90:99:0,262,3285 0/0:78,0:78:99:0,208,2617 0/0:66,0:66:99:0,184,2335 0/1:126,121:247:99:3240,0,3533 0/1:23,27:50:99:748,0,677 0/0:96,0:96:99:0,256,3202 0/0:73,0:73:99:0,202,2519 0/0:122,0:122:99:0,331,3948 0/1:50,81:131:99:2324,0,1373 0/0:124,0:124:99:0,343,4257 0/0:84,0:84:99:0,232,2982 0/0:223,0:223:99:0,596,7922 0/0:152,1:153:99:0,363,5218 0/0:154,0:154:99:0,427,5732 0/0:145,0:145:99:0,397,5246 0/0:63,0:63:99:0,175,2227 0/0:84,0:84:99:0,250,3121 0/0:61,0:61:99:0,168,2102 0/1:52,33:85:99:850,0,1536 0/0:68,0:68:99:0,196,2491 0/0:105,0:105:99:0,277,3517 0/1:38,43:82:99:1159,0,1155 0/0:90,0:90:99:0,247,3172 0/1:41,34:75:99:907,0,1177 0/0:94,0:94:99:0,265,3303 0/0:122,0:123:99:0,319,3982 0/0:91,0:91:99:0,253,3149 0/0:79,0:79:99:0,229,2873 0/1:39,42:81:99:1211,0,1181 0/0:85,0:85:99:0,229,2884 0/1:40,29:69:99:838,0,1303 11 102643604 . G T 1554.74 . AC=1;AF=0.012;AN=84;BaseQRankSum=-7.734;DP=7008;DS;Dels=0.00;FS=2.822;HRun=1;HaplotypeScore=1.9782;InbreedingCoeff=-0.0120;MQ=59.50;MQ0=0;MQRankSum=0.818;QD=11.19;ReadPosRankSum=0.052 GT:AD:DP:GQ:PL 0/1:80,59:139:99:1601,0,2297 0/0:145,0:145:99:0,391,4963 0/0:140,0:140:99:0,385,4894 0/0:229,0:229:99:0,635,8501 0/0:250,0:250:99:0,683,9301 0/0:244,0:244:99:0,680,9109 0/0:238,1:240:99:0,621,8771 0/0:234,0:234:99:0,623,8413 0/0:142,0:142:99:0,376,4803 0/0:118,0:118:99:0,322,4128 0/0:140,0:140:99:0,382,4868 0/0:141,0:141:99:0,382,4853 0/0:123,0:123:99:0,334,4225 0/0:156,0:156:99:0,403,5211 0/0:235,1:237:99:0,641,8002 0/0:90,0:90:99:0,256,3227 0/0:125,0:125:99:0,343,4310 0/0:132,0:132:99:0,358,4570 0/0:223,1:224:99:0,584,7402 0/0:216,0:216:99:0,563,7185 0/0:205,0:205:99:0,539,6773 0/0:113,0:113:99:0,301,3870 0/0:246,0:246:99:0,656,8952 0/0:235,1:236:99:0,641,8641 0/0:225,0:225:99:0,623,8478 0/0:249,1:250:99:0,637,9060 0/0:108,0:108:99:0,271,3473 0/0:141,0:141:99:0,385,4845 0/0:130,0:130:99:0,361,4596 0/0:117,0:117:99:0,319,3956 0/0:111,0:111:99:0,313,3954 0/0:208,0:208:99:0,512,6709 0/0:128,0:128:99:0,334,4237 0/0:164,0:164:99:0,439,5572 0/0:143,0:144:99:0,382,4856 0/0:152,0:152:99:0,421,5339 0/0:172,1:173:99:0,484,6072 0/0:126,0:127:99:0,325,4145 0/0:126,0:126:99:0,340,4322 0/0:138,0:138:99:0,382,4861 0/0:134,0:134:99:0,373,4735 0/0:166,0:166:99:0,454,5812 11 102643718 . G T 5503.85 . AC=4;AF=0.048;AN=84;BaseQRankSum=-19.774;DP=5143;DS;Dels=0.00;FS=9.237;HRun=1;HaplotypeScore=2.1964;InbreedingCoeff=-0.0500;MQ=59.53;MQ0=0;MQRankSum=0.287;QD=13.73;ReadPosRankSum=-0.791 GT:AD:DP:GQ:PL 0/0:87,0:87:99:0,247,3105 0/0:81,0:81:99:0,217,2761 0/0:100,0:100:99:0,277,3542 0/0:209,0:209:99:0,587,7884 0/0:202,1:203:99:0,560,7651 0/0:225,0:225:99:0,596,8147 0/0:182,0:182:99:0,506,6825 0/0:194,0:194:99:0,530,7213 0/0:85,0:85:99:0,244,3095 0/0:66,0:67:99:0,193,2450 0/0:91,0:91:99:0,259,3297 0/0:112,0:112:99:0,319,3995 0/1:49,45:94:99:1256,0,1354 0/0:86,0:86:99:0,244,3079 0/0:246,0:247:99:0,683,8737 0/0:85,0:85:99:0,235,2961 0/1:46,45:91:99:1281,0,1366 0/0:84,0:84:99:0,235,2969 0/0:127,3:130:99:0,361,4550 0/0:130,0:130:99:0,364,4672 0/1:59,63:123:99:1773,0,1792 0/1:48,45:93:99:1194,0,1469 0/0:250,0:250:99:0,671,9210 0/0:209,0:209:99:0,578,7801 0/0:189,0:189:99:0,527,7131 0/0:188,0:188:99:0,512,6896 0/0:61,0:61:99:0,172,2166 0/0:82,0:82:99:0,232,2935 0/0:87,0:87:99:0,241,3042 0/0:92,0:92:99:0,244,3121 0/0:79,0:79:99:0,229,2880 0/0:129,0:129:99:0,337,4355 0/0:92,0:92:99:0,250,3176 0/0:98,0:98:99:0,274,3507 0/0:91,0:91:99:0,247,3166 0/0:113,0:113:99:0,301,3874 0/0:106,0:106:99:0,298,3771 0/0:90,0:90:99:0,259,3257 0/0:97,1:98:99:0,277,3512 0/0:106,0:106:99:0,301,3780 0/0:81,2:83:99:0,190,2900 0/0:101,0:101:99:0,292,3689 11 102668022 . C T 12891.27 . AC=10;AF=0.119;AN=84;BaseQRankSum=-19.180;DP=3479;Dels=0.00;FS=48.847;HRun=2;HaplotypeScore=2.0786;InbreedingCoeff=0.3189;MQ=59.39;MQ0=0;MQRankSum=0.105;QD=18.06;ReadPosRankSum=0.703 GT:AD:DP:GQ:PL 0/0:62,0:62:99:0,175,2147 0/0:82,0:82:99:0,235,2962 0/0:57,0:57:99:0,172,2137 0/0:140,0:140:99:0,406,5261 0/0:149,0:149:99:0,430,5689 0/0:144,0:145:99:0,415,5447 0/0:105,0:105:99:0,313,4118 0/0:119,0:119:99:0,337,4283 0/1:23,34:57:99:1008,0,663 0/1:39,37:76:99:1081,0,1195 0/0:62,0:62:99:0,181,2251 0/0:54,0:54:99:0,159,1954 0/0:38,0:38:99:0,111,1347 0/0:70,0:70:99:0,205,2584 0/1:110,111:221:99:2919,0,3304 1/1:0,57:57:99:2049,172,0 0/0:55,0:55:99:0,150,1914 0/0:59,0:59:99:0,169,2109 0/0:91,0:91:99:0,256,3099 0/0:80,0:80:99:0,226,2842 0/0:111,0:111:99:0,307,3789 0/0:72,0:72:99:0,202,2510 0/0:150,1:151:99:0,410,5815 0/1:56,47:103:99:1360,0,1856 0/0:101,0:101:99:0,301,3959 1/1:2,84:86:99:2868,169,0 0/0:47,0:48:99:0,132,1596 0/0:63,0:63:99:0,187,2308 0/0:62,0:62:99:0,178,2195 0/0:67,0:67:99:0,193,2402 0/0:59,0:59:99:0,175,2200 0/0:89,0:89:99:0,262,3304 0/0:70,0:70:99:0,202,2528 0/0:58,0:58:99:0,166,2045 0/1:24,20:44:99:557,0,776 0/0:70,0:70:99:0,205,2516 0/0:94,0:94:99:0,277,3397 0/0:71,0:71:99:0,211,2622 0/0:82,0:82:99:0,238,2913 0/0:70,0:70:99:0,208,2587 0/0:59,0:59:99:0,172,2138 0/1:32,37:69:99:1050,0,905 11 102714266 . A T 303.07 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.219;DP=1249;Dels=0.00;FS=3.278;HRun=0;HaplotypeScore=0.6855;InbreedingCoeff=-0.0120;MQ=59.26;MQ0=0;MQRankSum=0.853;QD=14.43;ReadPosRankSum=-0.232 GT:AD:DP:GQ:PL 0/0:30,0:30:81.25:0,81,991 0/0:26,0:26:75.22:0,75,900 0/0:19,0:19:57.16:0,57,660 0/0:30,0:30:84.25:0,84,1006 0/0:32,0:32:96.29:0,96,1161 0/0:21,0:21:60.19:0,60,758 0/0:33,0:33:93.29:0,93,1158 0/0:37,0:37:96.30:0,96,1214 0/0:26,0:26:75.22:0,75,900 0/0:21,0:21:57.16:0,57,685 0/0:18,0:18:51.15:0,51,614 0/0:23,0:23:69.20:0,69,826 0/0:19,0:19:51.16:0,51,639 0/0:25,0:25:72.21:0,72,870 0/0:102,0:102:99:0,286,3390 0/0:29,0:29:81.24:0,81,966 0/0:24,0:24:72.20:0,72,861 0/0:23,0:23:69.21:0,69,823 0/0:50,0:50:99:0,135,1681 0/0:48,0:48:99:0,135,1649 0/0:42,0:42:99:0,114,1388 0/0:24,0:24:72.22:0,72,865 0/0:31,0:31:87.26:0,87,1054 0/0:28,0:28:72.23:0,72,936 0/0:20,0:20:54.16:0,54,660 0/0:31,1:32:87.26:0,87,1069 0/0:19,0:19:57.17:0,57,674 0/0:26,0:26:75.22:0,75,905 0/0:29,0:29:81.21:0,81,947 0/0:22,0:22:66.20:0,66,795 0/0:18,0:18:51.15:0,51,615 0/0:44,0:44:99:0,111,1410 0/0:25,0:25:72.21:0,72,858 0/0:25,0:25:72.20:0,72,855 0/1:9,12:21:99:349,0,241 0/0:27,0:27:78.23:0,78,939 0/0:41,0:41:99:0,102,1273 0/0:44,0:44:99:0,123,1487 0/0:24,0:24:69.18:0,69,806 0/0:28,0:28:72.23:0,72,906 0/0:27,0:27:75.23:0,75,916 0/0:16,0:16:45.13:0,45,535 11 102738075 . T C 2876.83 . AC=8;AF=0.095;AN=84;BaseQRankSum=-2.163;DP=1170;Dels=0.00;FS=0.776;HRun=1;HaplotypeScore=0.3952;InbreedingCoeff=0.1708;MQ=59.22;MQ0=0;MQRankSum=0.490;QD=13.83;ReadPosRankSum=0.781 GT:AD:DP:GQ:PL 0/0:26,0:26:69.22:0,69,877 0/0:18,0:18:48.15:0,48,613 0/0:23,0:23:63.19:0,63,792 0/0:22,0:22:60.19:0,60,766 0/0:50,0:50:99:0,135,1750 0/0:29,0:29:87.28:0,87,1140 0/1:17,15:32:99:439,0,445 0/0:34,0:34:96.31:0,96,1237 0/1:10,9:19:99:212,0,315 0/0:23,0:23:66.21:0,66,829 1/1:1,22:23:30.63:760,31,0 0/0:24,0:24:63.20:0,63,807 0/0:28,0:28:78.24:0,78,970 0/0:11,0:11:33.10:0,33,414 0/0:73,0:73:99:0,196,2465 0/0:17,0:17:42.13:0,42,541 0/0:21,0:21:60.18:0,60,734 0/0:27,0:27:78.25:0,78,985 0/0:37,0:37:99:0,99,1261 0/0:42,0:42:99:0,117,1457 0/0:49,0:49:99:0,132,1638 0/0:25,0:25:72.22:0,72,878 0/0:43,0:43:99:0,117,1517 0/0:32,0:32:78.26:0,78,1059 0/0:32,0:32:90.29:0,90,1183 0/0:22,0:22:60.19:0,60,789 0/0:16,0:16:36.12:0,36,481 0/0:18,0:18:48.15:0,48,609 0/0:20,0:20:57.18:0,57,711 0/0:20,0:20:57.18:0,57,713 0/0:22,0:22:57.18:0,57,740 0/1:29,25:54:99:665,0,779 0/0:35,0:35:84.26:0,84,1091 0/0:23,0:23:66.20:0,66,812 0/0:20,0:20:54.17:0,54,689 0/0:26,0:26:66.20:0,66,843 0/1:20,23:43:99:589,0,474 0/1:14,12:26:99:299,0,369 0/0:19,0:19:51.15:0,51,633 0/0:15,0:15:42.13:0,42,520 0/1:9,2:11:38.91:39,0,300 0/0:20,0:20:60.17:0,60,744 11 102738793 . G GT 31301.08 . AC=84;AF=1.000;AN=84;DP=777;FS=0.000;HRun=1;HaplotypeScore=94.2215;InbreedingCoeff=-0.0004;MQ=60.97;MQ0=0;QD=40.28 GT:AD:DP:GQ:PL 1/1:1,24:25:72.21:957,72,0 1/1:0,20:20:60.19:840,60,0 1/1:0,15:15:45.13:623,45,0 1/1:1,6:7:21.07:294,21,0 1/1:1,11:12:36.09:484,36,0 1/1:4,7:11:30.10:434,30,0 1/1:1,5:6:18.06:260,18,0 1/1:0,11:11:33.11:457,33,0 1/1:2,16:18:48.16:678,48,0 1/1:0,18:18:54.17:755,54,0 1/1:2,13:15:42.60:588,43,0 1/1:2,22:24:66.67:898,67,0 1/1:0,12:12:36.12:517,36,0 1/1:1,13:14:39.59:530,40,0 1/1:0,55:55:99:2303,163,0 1/1:1,7:8:21.07:304,21,0 1/1:0,17:17:51.16:717,51,0 1/1:2,13:15:42.10:550,42,0 1/1:0,29:29:87.29:1239,87,0 1/1:2,25:27:75.72:1067,76,0 1/1:2,24:27:75.70:1026,76,0 1/1:0,16:16:48.15:661,48,0 1/1:15,7:22:66.22:941,66,0 1/1:0,10:10:30.09:420,30,0 1/1:1,9:10:30.10:425,30,0 1/1:1,12:13:36.08:484,36,0 1/1:2,21:23:63.20:881,63,0 1/1:2,13:15:42.13:586,42,0 1/1:0,21:21:63.21:891,63,0 1/1:1,12:13:36.11:507,36,0 1/1:0,18:18:54.18:766,54,0 1/1:2,21:23:69.22:949,69,0 1/1:0,30:30:87.29:1230,87,0 1/1:0,16:16:48.13:627,48,0 1/1:1,12:13:36.11:489,36,0 1/1:0,24:24:72.22:995,72,0 1/1:2,32:34:99:1369,99,0 1/1:0,23:23:69.22:955,69,0 1/1:2,16:18:51.62:693,52,0 1/1:3,16:19:54.14:712,54,0 1/1:0,15:15:45.14:624,45,0 1/1:1,14:15:42.13:578,42,0 11 102738795 . G T 25054.57 . AC=84;AF=1.000;AN=84;DP=747;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=15.5530;InbreedingCoeff=-0.0008;MQ=60.96;MQ0=0;QD=33.54 GT:AD:DP:GQ:PL 1/1:0,21:21:54.17:680,54,0 1/1:0,20:20:60.19:736,60,0 1/1:0,14:14:42.13:520,42,0 1/1:0,6:6:15.05:186,15,0 1/1:0,11:11:33.10:397,33,0 1/1:0,11:11:27.09:343,27,0 1/1:0,6:6:18.06:231,18,0 1/1:0,9:9:24.08:307,24,0 1/1:0,17:17:48.15:582,48,0 1/1:0,17:17:51.15:609,51,0 1/1:0,14:14:39.12:478,39,0 1/1:0,23:23:66.19:788,66,0 1/1:0,12:12:36.10:426,36,0 1/1:0,14:14:33.10:419,33,0 1/1:0,57:57:99:1780,144,0 1/1:0,7:7:21.07:259,21,0 1/1:0,17:17:51.16:628,51,0 1/1:0,13:13:36.11:441,36,0 1/1:0,29:29:72.22:909,72,0 1/1:0,26:26:78.24:958,78,0 1/1:1,25:26:72.23:891,72,0 1/1:0,16:16:48.14:574,48,0 1/1:0,22:22:54.17:691,54,0 1/1:0,10:10:30.09:375,30,0 1/1:0,9:9:24.08:307,24,0 1/1:0,10:10:30.09:368,30,0 1/1:0,21:21:60.19:746,60,0 1/1:0,13:13:39.12:469,39,0 1/1:0,21:21:57.18:715,57,0 1/1:1,11:12:30.09:371,30,0 1/1:0,19:19:51.16:645,51,0 1/1:0,22:22:57.17:700,57,0 1/1:0,29:29:75.24:941,75,0 1/1:0,17:17:42.13:534,42,0 1/1:0,12:12:36.11:427,36,0 1/1:0,23:23:60.19:761,60,0 1/1:0,34:34:75.19:921,75,0 1/1:0,24:24:69.21:841,69,0 1/1:0,16:16:42.13:533,42,0 1/1:0,16:16:48.14:575,48,0 1/1:0,16:16:42.13:518,42,0 1/1:0,14:14:39.12:472,39,0 11 102738795 . G GT 29838.94 . AC=84;AF=1.000;AN=84;BaseQRankSum=1.522;DP=731;FS=2.828;HRun=1;HaplotypeScore=90.6605;InbreedingCoeff=-0.0006;MQ=60.57;MQ0=0;MQRankSum=1.623;QD=40.82;ReadPosRankSum=2.853 GT:AD:DP:GQ:PL 1/1:21,0:21:63.21:904,63,0 1/1:19,0:19:57.19:820,57,0 1/1:14,0:14:42.14:609,42,0 1/1:5,1:6:18.06:255,18,0 1/1:9,1:10:30.10:414,30,0 1/1:7,5:12:33.11:449,33,0 1/1:5,1:6:18.06:256,18,0 1/1:10,0:10:29.83:375,30,0 1/1:17,0:17:41.05:660,41,0 1/1:17,0:17:51.17:714,51,0 1/1:15,0:15:39.13:554,39,0 1/1:22,0:22:62.71:859,63,0 1/1:12,0:12:36.12:512,36,0 1/1:13,0:13:36:492,36,0 1/1:57,0:57:99:2322,166,0 1/1:7,0:7:21.07:299,21,0 1/1:17,0:17:51.16:715,51,0 1/1:13,0:13:39.07:521,39,0 1/1:28,0:28:84.28:1196,84,0 1/1:25,0:25:72.24:1029,72,0 1/1:25,0:25:69.69:976,70,0 1/1:14,0:14:42.14:601,42,0 1/1:7,15:22:66.22:924,66,0 1/1:9,0:9:27.09:377,27,0 1/1:8,1:9:27.09:379,27,0 1/1:11,0:10:30.10:412,30,0 1/1:21,0:21:63.21:895,63,0 1/1:13,0:13:39.13:552,39,0 1/1:21,0:21:60.20:859,60,0 1/1:11,0:11:33:442,33,0 1/1:19,0:19:57.18:788,57,0 1/1:20,1:21:63.20:882,63,0 1/1:29,0:29:84.28:1190,84,0 1/1:15,0:15:42.13:581,42,0 1/1:10,0:10:30.10:432,30,0 1/1:24,0:24:72.23:1008,72,0 1/1:32,1:33:96.25:1280,96,0 1/1:22,0:22:66.22:938,66,0 1/1:17,0:17:44.23:619,44,0 1/1:15,0:15:39.37:592,39,0 1/1:15,0:15:45.15:617,45,0 1/1:14,0:14:42.09:544,42,0 11 102826042 . C A 1606.89 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.403;DP=5253;DS;Dels=0.00;FS=0.603;HRun=1;HaplotypeScore=1.6561;InbreedingCoeff=-0.0120;MQ=59.57;MQ0=0;MQRankSum=0.448;QD=15.60;ReadPosRankSum=-0.108 GT:AD:DP:GQ:PL 0/0:117,0:117:99:0,343,4211 0/0:99,0:99:99:0,289,3558 0/0:95,0:95:99:0,268,3331 0/0:205,0:205:99:0,584,7759 0/0:183,0:183:99:0,524,7073 0/0:179,0:179:99:0,485,6532 0/0:163,0:163:99:0,463,6180 0/0:178,0:178:99:0,497,6637 0/0:121,0:122:99:0,349,4339 0/0:115,0:115:99:0,319,3983 0/0:93,0:93:99:0,274,3369 0/0:97,0:97:99:0,280,3480 0/0:62,0:62:99:0,175,2130 0/0:106,0:106:99:0,298,3674 0/0:247,3:250:99:0,665,8322 0/0:103,0:103:99:0,292,3599 0/0:107,0:107:99:0,295,3652 0/0:101,0:101:99:0,292,3609 0/0:141,0:141:99:0,373,4661 0/0:169,0:169:99:0,460,5739 0/0:159,0:159:99:0,436,5398 0/0:75,0:75:99:0,199,2506 0/0:208,0:208:99:0,587,7907 0/0:157,0:157:99:0,445,6045 0/0:168,0:168:99:0,479,6440 0/0:161,0:161:99:0,460,6115 0/0:71,0:71:99:0,205,2527 0/0:85,0:85:99:0,244,3025 0/0:91,0:91:99:0,250,3112 0/0:90,0:91:99:0,256,3169 0/0:95,0:95:99:0,280,3437 0/0:120,1:121:99:0,334,4199 0/0:87,1:88:99:0,256,3115 0/0:101,0:101:99:0,283,3510 0/1:49,54:103:99:1653,0,1408 0/0:124,0:125:99:0,358,4444 0/0:140,0:140:99:0,394,4870 0/0:103,0:103:99:0,292,3624 0/0:121,0:122:99:0,340,4222 0/0:121,0:121:99:0,340,4200 0/0:88,0:88:99:0,247,3041 0/0:95,0:95:99:0,274,3361 11 102826383 . G A 877.83 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.241;DP=2857;DS;Dels=0.00;FS=0.633;HRun=1;HaplotypeScore=2.4840;InbreedingCoeff=-0.0120;MQ=59.35;MQ0=0;MQRankSum=1.211;QD=14.63;ReadPosRankSum=-1.809 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,120,1447 0/0:59,0:59:99:0,162,1924 0/0:52,0:52:99:0,156,1820 0/0:112,0:112:99:0,304,3804 0/0:118,0:118:99:0,328,4141 0/0:109,0:109:99:0,277,3524 0/0:92,0:92:99:0,247,3116 0/0:81,0:81:99:0,220,2724 0/0:65,1:67:99:0,174,2063 0/0:52,0:52:99:0,138,1588 0/0:57,0:57:99:0,156,1880 0/0:44,0:44:99:0,126,1461 0/0:56,0:56:99:0,153,1777 0/0:45,0:45:99:0,129,1563 0/0:178,0:180:99:0,487,5667 0/0:52,0:52:99:0,150,1761 0/0:54,0:54:99:0,147,1727 0/0:44,0:44:99:0,108,1320 0/0:75,0:78:99:0,202,2332 0/0:91,0:91:99:0,244,2893 0/0:79,0:80:99:0,214,2465 0/0:50,0:50:99:0,141,1643 0/0:132,0:133:99:0,358,4476 0/0:74,0:75:99:0,205,2536 0/0:82,0:84:99:0,226,2822 0/0:67,0:67:99:0,193,2360 0/0:39,0:39:99:0,108,1282 0/0:47,0:47:99:0,126,1503 0/0:43,0:43:99:0,123,1386 0/0:50,0:50:99:0,138,1587 0/0:50,0:50:99:0,144,1686 0/0:101,0:101:99:0,268,3110 0/0:55,0:55:99:0,153,1792 0/0:55,1:56:99:0,131,1846 0/0:52,1:53:99:0,117,1730 0/0:62,1:63:99:0,142,1957 0/0:78,0:78:99:0,208,2364 0/0:44,0:44:99:0,129,1473 0/0:51,0:51:99:0,138,1669 0/0:53,0:53:99:0,153,1834 0/0:39,0:39:99:0,117,1376 0/1:29,31:60:99:924,0,779 11 102980324 . C T 3596.64 . AC=8;AF=0.095;AN=84;BaseQRankSum=-2.912;DP=1459;Dels=0.00;FS=6.629;HRun=0;HaplotypeScore=0.8292;InbreedingCoeff=-0.1053;MQ=58.89;MQ0=0;MQRankSum=1.917;QD=13.94;ReadPosRankSum=-0.474 GT:AD:DP:GQ:PL 0/0:25,0:25:75.20:0,75,870 0/0:27,0:27:75.23:0,75,910 0/0:27,0:27:66.20:0,66,812 0/0:37,0:37:99:0,102,1326 0/0:28,0:28:72.24:0,72,969 0/0:26,0:26:66.19:0,66,845 0/0:28,0:28:81.26:0,81,1074 0/0:30,0:30:84.27:0,84,1079 0/1:17,26:43:99:731,0,470 0/1:7,14:21:99:405,0,193 0/1:11,16:27:99:465,0,312 0/0:32,0:32:87.25:0,87,1047 0/0:22,0:22:60.16:0,60,689 0/0:21,0:21:54.16:0,54,665 0/0:123,0:123:99:0,316,3825 0/0:28,0:28:78.22:0,78,918 0/0:38,0:38:90.26:0,90,1107 0/0:28,0:28:81.24:0,81,965 0/0:54,0:54:99:0,138,1594 0/0:58,0:58:99:0,150,1866 0/0:59,0:60:99:0,156,1863 0/0:47,0:47:99:0,132,1581 0/1:20,21:41:99:592,0,563 0/0:29,0:29:78.25:0,78,1028 0/0:35,0:35:93.29:0,93,1197 0/1:20,9:29:99:213,0,676 0/0:20,0:20:54.16:0,54,646 0/0:29,0:29:75.21:0,75,904 0/0:27,0:27:78.22:0,78,931 0/0:23,0:23:60.18:0,60,743 0/1:14,12:26:99:294,0,369 0/0:40,0:40:99:0,108,1294 0/0:43,0:43:99:0,120,1398 0/0:31,0:31:84.26:0,84,1024 0/0:32,0:32:90.24:0,90,1064 0/0:37,0:37:99:0,105,1235 0/1:27,18:45:99:505,0,742 0/1:13,13:26:99:393,0,339 0/0:29,0:29:78.24:0,78,948 0/0:33,0:33:96.27:0,96,1124 0/0:28,0:28:81.23:0,81,957 0/0:26,0:26:78.23:0,78,913 11 102991197 . C T 20831.80 . AC=15;AF=0.179;AN=84;BaseQRankSum=-24.801;DP=3984;Dels=0.00;FS=11.805;HRun=2;HaplotypeScore=1.2064;InbreedingCoeff=-0.2174;MQ=59.61;MQ0=0;MQRankSum=-0.789;QD=13.94;ReadPosRankSum=-0.783 GT:AD:DP:GQ:PL 0/0:66,0:66:99:0,187,2338 0/0:67,0:67:99:0,202,2514 0/0:56,0:56:99:0,169,2094 0/0:190,1:191:99:0,535,7487 0/0:126,0:127:99:0,364,4922 0/1:93,67:160:99:2035,0,3263 0/1:82,81:163:99:2565,0,2673 0/1:74,64:138:99:1836,0,2580 0/0:66,0:66:99:0,196,2464 0/0:61,0:61:99:0,184,2299 0/0:64,0:64:99:0,193,2401 0/0:65,0:65:99:0,190,2380 0/0:65,0:65:99:0,181,2282 0/0:57,0:57:99:0,169,2110 0/1:109,94:204:99:2489,0,3491 0/1:24,24:48:99:715,0,715 0/1:35,36:72:99:1055,0,1098 0/1:39,28:67:99:816,0,1246 0/1:56,55:114:99:1565,0,1629 0/0:128,0:128:99:0,361,4568 0/1:62,61:123:99:1767,0,1849 0/1:43,30:73:99:881,0,1363 0/0:189,0:189:99:0,551,7462 0/0:151,0:151:99:0,436,5778 0/0:151,0:151:99:0,442,5899 0/0:139,0:139:99:0,415,5528 0/0:47,0:47:99:0,138,1737 0/0:81,0:81:99:0,235,2926 0/0:69,0:69:99:0,202,2538 0/0:70,0:70:99:0,211,2630 0/0:67,0:67:99:0,196,2469 0/0:114,0:115:99:0,328,4166 0/0:91,1:92:99:0,237,3266 0/1:28,38:66:99:1187,0,835 0/1:31,32:63:99:916,0,959 0/1:37,37:74:99:1108,0,1167 0/0:102,0:102:99:0,295,3688 0/0:75,0:75:99:0,217,2720 0/0:69,0:70:99:0,199,2480 0/1:40,34:74:99:998,0,1278 0/0:59,0:59:99:0,172,2146 0/1:26,29:55:99:899,0,725 11 103019260 . G A 376.02 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.399;DP=408;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.2921;InbreedingCoeff=-0.0292;MQ=59.21;MQ0=0;MQRankSum=0.260;QD=17.91;ReadPosRankSum=-0.373 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,191 0/0:6,0:6:15.05:0,15,190 0/0:13,0:13:30.09:0,30,396 0/0:14,0:14:36.12:0,36,493 0/0:10,0:10:30.10:0,30,404 0/0:8,0:8:24.08:0,24,325 0/0:14,0:14:36.12:0,36,489 0/0:12,0:12:30.10:0,30,415 0/0:10,0:10:27.09:0,27,352 0/0:10,0:10:27.08:0,27,335 0/0:8,0:8:21.07:0,21,279 0/0:7,0:7:18.06:0,18,233 0/0:7,0:7:18.06:0,18,226 0/0:9,0:9:24.08:0,24,312 0/0:24,0:24:60.20:0,60,800 0/0:10,0:10:30.09:0,30,377 0/1:4,6:10:89.30:184,0,89 0/0:6,0:6:18.06:0,18,226 0/0:14,0:14:42.12:0,42,502 0/0:7,0:7:15.05:0,15,201 0/0:17,0:17:48.16:0,48,631 0/0:8,0:8:21.07:0,21,273 0/0:10,0:10:27.09:0,27,366 0/0:14,0:14:39.12:0,39,518 0/0:6,0:6:18.06:0,18,246 0/0:12,0:12:33.10:0,33,438 0/0:6,0:6:15.05:0,15,198 0/0:10,0:10:24.08:0,24,314 0/0:6,0:6:15.05:0,15,191 0/0:9,0:9:27.07:0,27,330 0/0:9,0:9:24.07:0,24,302 0/0:15,0:15:39.12:0,39,507 0/0:10,0:10:30.10:0,30,391 0/0:7,0:7:21.07:0,21,268 0/0:5,0:5:12.03:0,12,147 0/0:8,0:8:21.07:0,21,272 0/0:10,0:10:27.09:0,27,347 0/0:10,0:10:27.08:0,27,336 0/0:6,0:6:18.06:0,18,233 0/0:6,0:6:15.05:0,15,197 0/0:9,0:9:27.07:0,27,317 0/1:3,8:11:77.08:254,0,77 11 103026168 . C A 1312.92 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.406;DP=1727;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.9260;InbreedingCoeff=-0.0244;MQ=59.11;MQ0=0;MQRankSum=1.217;QD=13.54;ReadPosRankSum=-0.198 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,102,1286 0/0:25,0:25:72.22:0,72,906 0/0:33,0:33:90.28:0,90,1135 0/0:58,0:58:99:0,172,2217 0/0:66,1:68:99:0,184,2448 0/0:51,1:52:99:0,141,1872 0/0:49,0:49:99:0,138,1843 0/0:42,0:42:99:0,123,1664 0/0:29,0:29:84.26:0,84,1058 0/0:36,0:36:99:0,99,1225 0/0:39,0:39:99:0,102,1282 0/0:29,0:29:81.23:0,81,996 0/0:26,0:26:78.24:0,78,961 0/0:29,0:29:81.25:0,81,1015 0/0:82,0:82:99:0,235,2937 0/0:22,0:22:57.18:0,57,732 0/0:32,0:32:90.28:0,90,1115 0/0:32,0:33:90.26:0,90,1091 0/0:44,0:44:99:0,126,1573 0/0:62,0:62:99:0,162,2043 0/0:49,0:49:99:0,141,1763 0/0:22,0:22:66.20:0,66,806 0/0:73,0:73:99:0,199,2675 0/1:23,25:48:99:751,0,671 0/1:28,21:49:99:625,0,794 0/0:44,0:44:99:0,114,1523 0/0:25,0:25:72.23:0,72,912 0/0:35,0:35:93.28:0,93,1147 0/0:32,0:32:90.28:0,90,1117 0/0:34,0:34:90.28:0,90,1115 0/0:37,0:37:99:0,108,1358 0/0:69,0:69:99:0,187,2316 0/0:46,0:46:99:0,123,1497 0/0:36,0:36:99:0,108,1347 0/0:34,0:34:96.28:0,96,1183 0/0:31,0:31:84.24:0,84,1045 0/0:38,0:38:99:0,108,1345 0/0:41,0:41:99:0,108,1364 0/0:40,0:40:99:0,114,1390 0/0:38,0:38:99:0,114,1420 0/0:25,0:25:69.21:0,69,848 0/0:54,0:54:99:0,150,1899 11 103049920 . CAT C 127.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=10.767;DP=2211;FS=283.590;HRun=0;HaplotypeScore=172.6485;InbreedingCoeff=-0.0335;MQ=59.16;MQ0=0;MQRankSum=3.526;QD=0.70;ReadPosRankSum=-11.538 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,105,2126 0/0:42,0:42:99:0,111,2208 0/0:28,0:28:52.42:0,52,1485 0/0:79,0:79:99:0,226,4414 0/0:94,0:94:99:0,240,4796 0/0:75,0:74:99:0,195,3849 0/0:71,0:66:99:0,174,3427 0/0:76,0:74:99:0,185,4142 0/0:47,0:47:99:0,132,2615 0/0:32,0:32:64.38:0,64,1702 0/0:36,0:36:93.26:0,93,1843 0/0:31,0:31:33.60:0,34,1488 0/0:34,0:34:72.42:0,72,1893 0/0:33,0:33:61:0,61,1637 0/0:137,0:137:99:0,247,6853 0/0:20,0:20:1.42:4,0,872 0/0:35,0:35:84.13:0,84,1665 0/0:37,0:37:93.05:0,93,1868 0/1:63,36:99:51.51:52,0,3431 0/0:64,0:64:99:0,183,3613 0/1:57,28:85:99:147,0,2942 0/0:50,0:50:99:0,119,2330 0/0:88,0:88:99:0,213,4215 0/0:82,0:80:99:0,220,4364 0/0:96,0:93:99:0,261,5231 0/0:83,0:78:99:0,187,3973 0/0:31,0:31:53.72:0,54,1489 0/0:38,0:38:74.64:0,75,1983 0/0:22,0:22:60.06:0,60,1201 0/0:45,0:45:81.27:0,81,2026 0/0:24,0:24:35.24:0,35,1121 0/0:61,0:61:99:0,166,3307 0/0:59,0:59:99:0,141,2745 0/0:26,0:26:57.11:0,57,1085 0/0:39,0:39:96.31:0,96,1941 0/0:44,0:44:99:0,105,2090 0/0:50,0:50:82.90:0,83,2616 0/0:44,0:44:86.27:0,86,2191 0/0:28,0:28:58.19:0,58,1484 0/0:31,0:31:35.58:0,36,1538 0/0:30,0:30:53.35:0,53,1506 0/0:44,0:43:87.40:0,87,2120 11 103049924 . A C 6333.45 . 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C T 102144.48 . AC=58;AF=0.690;AN=84;BaseQRankSum=-22.070;DP=4596;Dels=0.00;FS=3.480;HRun=1;HaplotypeScore=1.3904;InbreedingCoeff=-0.0027;MQ=59.57;MQ0=0;MQRankSum=-0.206;QD=24.46;ReadPosRankSum=-0.983 GT:AD:DP:GQ:PL 1/1:0,94:94:99:3240,274,0 1/1:0,77:77:99:2655,220,0 1/1:2,98:100:99:3250,232,0 1/1:0,179:179:99:6071,497,0 1/1:0,146:146:99:5042,409,0 0/1:75,76:151:99:2291,0,2509 0/1:58,60:119:99:1759,0,1824 0/0:125,1:126:99:0,301,4495 1/1:0,93:93:99:3113,262,0 1/1:0,69:69:99:2256,187,0 1/1:0,71:71:99:2497,208,0 1/1:0,82:82:99:2687,223,0 1/1:0,88:88:99:2947,244,0 1/1:1,79:80:99:2708,195,0 0/1:130,111:241:99:3033,0,3758 0/1:40,44:84:99:1283,0,1156 0/1:39,40:79:99:1130,0,1126 0/1:46,53:99:99:1523,0,1331 0/1:81,66:147:99:1792,0,2399 1/1:1,162:163:99:5511,423,0 0/1:74,70:144:99:1945,0,2142 0/0:92,2:94:99:0,175,2920 1/1:0,171:171:99:5896,481,0 1/1:0,141:141:99:4834,388,0 1/1:0,141:141:99:4755,382,0 1/1:0,118:118:99:3907,319,0 0/1:34,40:74:99:1074,0,1024 1/1:0,109:109:99:3560,295,0 0/1:40,28:68:99:803,0,1185 0/1:48,35:83:99:995,0,1399 1/1:0,77:77:99:2651,223,0 1/1:0,141:141:99:4554,370,0 0/0:95,0:95:99:0,265,3235 0/1:40,45:85:99:1311,0,1176 0/1:51,57:108:99:1656,0,1377 0/0:105,0:105:99:0,283,3485 0/1:80,69:149:99:1851,0,2386 1/1:1,84:85:99:2764,203,0 0/1:41,42:83:99:1174,0,1166 0/1:42,46:88:99:1331,0,1208 0/1:20,39:59:99:1157,0,557 0/1:51,39:90:99:1138,0,1370 11 103114467 . G C 376.43 . 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A C 8847.37 . 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G A 1401.87 . 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T C 4573.62 . AC=4;AF=0.048;AN=84;BaseQRankSum=2.107;DP=2801;Dels=0.00;FS=8.328;HRun=1;HaplotypeScore=0.8483;InbreedingCoeff=-0.0500;MQ=59.34;MQ0=0;MQRankSum=-0.674;QD=14.25;ReadPosRankSum=0.287 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,126,1573 0/0:42,0:42:99:0,120,1510 0/0:44,0:44:99:0,120,1521 0/0:122,0:122:99:0,340,4378 0/0:119,0:119:99:0,337,4396 0/0:82,0:82:99:0,232,3071 0/0:95,0:95:99:0,268,3514 0/0:89,0:89:99:0,241,3191 0/1:29,27:56:99:709,0,909 0/1:24,27:51:99:857,0,721 0/0:42,0:42:99:0,117,1486 0/0:37,0:37:99:0,108,1343 0/0:59,0:59:99:0,156,2000 0/0:53,0:53:99:0,147,1854 0/1:91,81:173:99:2284,0,2647 0/1:18,23:41:99:724,0,549 0/0:47,0:47:99:0,129,1631 0/0:50,0:50:99:0,138,1759 0/0:86,0:86:99:0,232,2947 0/0:63,0:64:99:0,162,2071 0/0:76,0:76:99:0,196,2509 0/0:43,0:43:99:0,120,1521 0/0:146,0:146:99:0,403,5261 0/0:81,0:81:99:0,223,2968 0/0:96,0:96:99:0,265,3478 0/0:78,0:78:99:0,202,2682 0/0:46,0:46:99:0,129,1629 0/0:48,0:48:99:0,144,1775 0/0:53,0:53:99:0,153,1918 0/0:55,0:55:99:0,153,1944 0/0:49,0:49:99:0,141,1786 0/0:74,1:75:99:0,199,2533 0/0:49,0:49:99:0,138,1720 0/0:71,0:71:99:0,205,2580 0/0:51,0:51:99:0,147,1867 0/0:61,0:61:99:0,178,2220 0/0:63,0:63:99:0,169,2142 0/0:49,0:49:99:0,138,1709 0/0:52,0:52:99:0,144,1836 0/0:52,0:52:99:0,138,1762 0/0:44,0:44:99:0,120,1532 0/0:66,0:66:99:0,196,2441 11 104905047 . G A 17165.24 . 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G A 5381.12 . AC=6;AF=0.071;AN=84;BaseQRankSum=-4.175;DP=2468;Dels=0.00;FS=16.777;HRun=2;HaplotypeScore=1.0014;InbreedingCoeff=-0.0769;MQ=59.46;MQ0=0;MQRankSum=0.365;QD=14.70;ReadPosRankSum=-1.339 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,135,1727 0/0:65,0:65:99:0,172,2207 0/0:43,0:43:99:0,114,1479 0/0:77,0:77:99:0,205,2740 0/0:46,0:46:99:0,120,1643 0/1:32,43:76:99:1189,0,929 0/0:60,0:60:99:0,154,2109 0/1:34,37:71:99:1113,0,966 0/0:54,0:54:99:0,150,1937 0/0:51,0:51:99:0,141,1836 0/0:39,0:39:99:0,105,1329 0/1:34,25:59:99:682,0,971 0/0:57,0:57:99:0,147,1910 0/1:36,20:56:99:537,0,1074 0/0:157,0:159:99:0,412,5258 0/0:39,0:39:99:0,105,1342 0/0:55,0:55:99:0,147,1870 0/0:52,0:52:99:0,132,1685 0/0:75,0:75:99:0,199,2537 0/0:63,0:63:99:0,172,2181 0/0:70,0:70:99:0,181,2288 0/0:44,0:44:99:0,117,1493 0/0:74,0:74:99:0,196,2646 0/0:49,0:49:99:0,132,1795 0/0:58,0:58:99:0,153,2076 0/0:52,0:52:99:0,138,1853 0/0:29,0:29:78.23:0,78,992 0/0:52,0:52:99:0,150,1925 0/0:59,0:59:99:0,153,1983 0/1:20,39:59:99:1161,0,550 0/0:54,0:54:99:0,156,1960 0/0:69,0:69:99:0,178,2336 0/1:21,24:45:99:699,0,619 0/0:47,0:47:99:0,129,1620 0/0:62,0:62:99:0,181,2260 0/0:60,0:60:99:0,156,2009 0/0:59,0:59:99:0,153,1980 0/0:51,0:51:99:0,135,1733 0/0:63,0:63:99:0,166,2151 0/0:58,0:58:99:0,165,2095 0/0:55,1:56:99:0,120,1891 0/0:53,0:53:99:0,141,1819 11 105850456 . A C 25.29 . AC=2;AF=0.024;AN=84;BaseQRankSum=-15.800;DP=1276;Dels=0.00;FS=28.097;HRun=2;HaplotypeScore=0.6614;InbreedingCoeff=-0.0403;MQ=58.51;MQ0=0;MQRankSum=0.704;QD=0.40;ReadPosRankSum=0.653 GT:AD:DP:GQ:PL 0/0:16,11:27:39.10:0,39,440 0/0:14,13:28:14.41:0,14,359 0/0:15,7:22:39.03:0,39,381 0/0:28,20:48:72.17:0,72,784 0/0:17,11:28:48.08:0,48,501 0/0:24,17:41:63.15:0,63,696 0/0:24,12:36:14.54:0,15,473 0/0:15,13:28:16.35:0,16,341 0/0:12,13:25:30.06:0,30,316 0/0:15,9:25:8.43:0,8,347 0/0:10,11:22:3.39:0,3,273 0/0:14,14:28:33.09:0,33,376 0/0:13,6:19:33.09:0,33,367 0/0:17,17:34:2.72:0,3,424 0/0:36,32:69:29.45:0,29,938 0/0:21,12:33:35.43:0,35,561 0/0:21,13:34:54.13:0,54,603 0/0:15,6:21:33.09:0,33,369 0/1:9,19:28:44.57:45,0,182 0/0:19,14:34:48.05:0,48,490 0/1:13,22:35:42.74:43,0,342 0/0:13,8:21:11.38:0,11,327 0/0:26,28:55:62.05:0,62,707 0/0:23,7:30:66.12:0,66,699 0/0:20,10:30:48.11:0,48,535 0/0:16,22:39:14.42:0,14,396 0/0:12,11:23:33.08:0,33,366 0/0:13,11:24:7.39:0,7,308 0/0:11,11:23:33.07:0,33,353 0/0:19,14:33:54.12:0,54,576 0/0:12,11:23:27.06:0,27,295 0/0:18,11:29:48.05:0,48,481 0/0:14,3:17:42.09:0,42,454 0/0:18,14:32:17.70:0,18,501 0/0:11,13:25:21.05:0,21,234 0/0:17,12:29:36.99:0,37,408 0/0:13,9:23:27.08:0,27,323 0/0:14,21:36:16.42:0,16,408 0/0:15,10:25:12.34:0,12,332 0/0:20,12:32:35.43:0,35,560 0/0:15,13:28:42.07:0,42,451 0/0:22,12:34:25.41:0,25,489 11 105948563 . C T 2420.66 . AC=4;AF=0.048;AN=84;BaseQRankSum=5.707;DP=1705;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.0701;InbreedingCoeff=-0.0500;MQ=58.89;MQ0=0;MQRankSum=1.108;QD=14.76;ReadPosRankSum=0.855 GT:AD:DP:GQ:PL 0/0:27,0:27:78.21:0,78,881 0/0:29,0:29:72.18:0,72,819 0/0:30,0:30:75.22:0,75,872 0/0:107,0:107:99:0,304,3542 0/0:73,0:73:99:0,208,2452 0/0:55,0:56:99:0,147,1762 0/0:49,0:49:99:0,141,1700 0/0:50,0:50:99:0,135,1576 0/0:33,0:33:96.27:0,96,1109 0/0:31,0:31:81.17:0,81,877 0/0:24,0:24:66.13:0,66,719 0/0:30,0:30:81.19:0,81,897 0/0:18,0:18:54.12:0,54,611 0/0:39,0:39:99:0,111,1235 0/0:87,1:88:99:0,204,2643 0/0:33,0:33:93.17:0,93,959 0/0:34,0:34:90.20:0,90,991 0/0:25,0:25:66.13:0,66,697 0/1:16,25:41:99:802,0,403 0/1:34,27:61:99:764,0,789 0/0:44,0:44:99:0,117,1312 0/0:42,0:42:99:0,111,1243 0/0:86,1:88:99:0,189,2604 0/0:48,0:48:99:0,126,1505 0/0:58,0:59:99:0,165,1946 0/0:46,0:46:99:0,129,1539 0/0:26,0:26:75.17:0,75,822 0/0:24,0:24:66.14:0,66,730 0/0:26,0:26:66.18:0,66,764 0/0:31,0:31:90.21:0,90,981 0/0:25,0:25:75.19:0,75,831 0/0:46,0:47:99:0,123,1420 0/0:31,0:31:90.25:0,90,1029 0/0:32,0:32:87.21:0,87,960 0/0:33,0:33:96.24:0,96,1064 0/0:40,0:40:99:0,117,1241 0/0:42,0:44:99:0,108,1206 0/0:30,0:30:78.22:0,78,914 0/0:29,0:29:81.22:0,81,923 0/1:13,19:33:99:493,0,292 0/0:20,0:20:51.09:0,51,557 0/1:14,15:29:99:447,0,356 11 106408071 . C T 88009.30 . AC=51;AF=0.607;AN=84;BaseQRankSum=-47.975;DP=6578;DS;Dels=0.00;FS=18.830;HRun=3;HaplotypeScore=1.7732;InbreedingCoeff=-0.1480;MQ=53.54;MQ0=0;MQRankSum=-39.088;QD=15.50;ReadPosRankSum=-6.790 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3469,298,0 1/1:0,110:110:99:3797,331,0 0/1:76,44:120:99:1042,0,2220 0/1:187,63:250:99:1453,0,6099 0/1:185,65:250:99:1592,0,5773 0/1:185,65:250:99:1523,0,5996 0/1:180,70:250:99:1652,0,5815 0/1:173,77:250:99:1964,0,5208 0/0:161,0:161:99:0,418,5462 0/1:71,40:111:99:1052,0,2099 0/1:69,34:104:99:888,0,2194 0/1:66,51:117:99:1404,0,1991 0/1:61,36:97:99:952,0,1795 0/1:77,49:126:99:1314,0,2292 0/1:178,72:250:99:1702,0,5263 0/1:58,27:85:99:705,0,1735 0/0:162,0:162:99:0,403,5297 0/0:174,0:174:99:0,454,5896 0/1:164,86:250:99:2268,0,4674 1/1:0,159:159:99:5319,460,0 0/1:152,98:250:99:2566,0,4313 1/1:1,113:114:99:3743,296,0 1/1:0,175:175:99:5920,511,0 0/1:169,81:250:99:2135,0,5062 1/1:0,162:162:99:5546,475,0 0/1:172,78:250:99:2039,0,5474 0/1:50,30:80:99:826,0,1454 1/1:0,96:96:99:3282,283,0 0/0:153,1:154:99:0,362,5043 1/1:0,95:95:99:3239,280,0 1/1:0,92:92:99:3157,271,0 0/0:250,0:250:99:0,647,8443 0/1:115,72:187:99:1862,0,3383 1/1:0,82:82:99:2808,244,0 0/1:83,40:123:99:962,0,2541 1/1:0,88:88:99:3021,259,0 1/1:0,138:138:99:4552,391,0 0/1:95,48:143:99:1240,0,2863 0/1:94,49:143:99:1312,0,2702 1/1:0,105:105:99:3494,301,0 1/1:3,89:92:99:2960,190,0 0/1:85,48:133:99:1249,0,2647 11 106647222 . G A 2817.73 . AC=5;AF=0.060;AN=84;BaseQRankSum=-8.766;DP=1771;Dels=0.00;FS=7.906;HRun=2;HaplotypeScore=0.6224;InbreedingCoeff=-0.0633;MQ=58.97;MQ0=0;MQRankSum=0.111;QD=13.23;ReadPosRankSum=1.065 GT:AD:DP:GQ:PL 0/0:25,0:25:72.22:0,72,901 0/0:31,0:31:90.27:0,90,1116 0/0:35,0:35:99:0,105,1310 0/0:77,0:77:99:0,226,3019 0/0:61,0:62:99:0,178,2413 0/0:65,0:65:99:0,193,2563 0/0:57,0:57:99:0,156,2058 0/0:50,0:50:99:0,141,1925 0/0:35,0:35:99:0,102,1312 0/1:15,12:27:99:362,0,475 0/0:30,0:31:90.29:0,90,1142 0/0:34,0:34:99:0,102,1293 0/0:32,0:32:90.28:0,90,1132 0/0:36,0:36:99:0,102,1312 0/0:110,0:110:99:0,307,3891 0/0:22,0:22:66.21:0,66,838 0/0:25,0:25:72.23:0,72,920 0/0:35,0:35:99:0,102,1297 0/1:32,23:55:99:644,0,921 0/1:23,23:46:99:709,0,603 0/0:51,0:51:99:0,147,1870 0/0:30,0:30:90.28:0,90,1124 0/0:87,0:87:99:0,250,3417 0/0:56,0:56:99:0,166,2200 0/0:79,0:79:99:0,220,2892 0/0:36,0:36:99:0,102,1381 0/0:25,0:25:72.22:0,72,902 0/0:31,0:31:93.30:0,93,1181 0/0:26,0:26:78.20:0,78,955 0/0:34,0:34:96.31:0,96,1235 0/0:37,0:37:99:0,108,1373 0/0:43,0:43:99:0,123,1552 0/0:24,0:24:66.21:0,66,829 0/0:48,0:48:99:0,138,1768 0/0:25,0:25:69.21:0,69,879 0/0:32,0:32:93.30:0,93,1199 0/0:50,0:50:99:0,141,1809 0/0:24,0:24:72.22:0,72,897 0/1:16,25:41:99:723,0,495 0/0:37,0:38:99:0,111,1406 0/0:20,0:20:60.19:0,60,767 0/1:28,16:44:99:477,0,896 11 107427616 . C G 1478.23 . AC=1;AF=0.012;AN=84;BaseQRankSum=9.701;DP=4263;DS;Dels=0.00;FS=10.149;HRun=2;HaplotypeScore=3.3682;InbreedingCoeff=-0.0120;MQ=57.50;MQ0=0;MQRankSum=1.511;QD=13.69;ReadPosRankSum=4.175 GT:AD:DP:GQ:PL 0/0:72,0:73:99:0,208,2374 0/0:62,0:62:99:0,168,1976 0/0:74,0:74:99:0,205,2306 0/0:184,0:184:99:0,466,5809 0/0:156,0:157:99:0,415,5262 0/0:159,0:159:99:0,400,5080 0/0:126,0:127:99:0,331,4142 0/1:62,46:108:99:1524,0,1681 0/0:81,0:81:99:0,235,2701 0/0:80,0:80:99:0,220,2525 0/0:64,0:64:99:0,168,1962 0/0:94,0:94:99:0,259,2958 0/0:66,0:66:99:0,177,2081 0/0:67,0:67:99:0,192,2173 0/0:242,0:242:99:0,641,7309 0/0:61,0:61:99:0,165,1904 0/0:81,0:82:99:0,202,2323 0/0:100,0:100:99:0,277,3199 0/0:94,0:94:99:0,244,2766 0/0:148,0:148:99:0,376,4555 0/0:114,0:114:99:0,289,3291 0/0:94,0:94:99:0,238,2770 0/0:187,0:187:99:0,490,6078 0/0:131,0:132:99:0,337,4260 0/0:143,0:143:99:0,373,4737 0/0:120,0:120:99:0,319,3965 0/0:52,0:52:99:0,147,1667 0/0:95,0:95:99:0,250,2868 0/0:80,0:81:99:0,214,2480 0/0:74,0:74:99:0,190,2241 0/0:82,0:82:99:0,232,2651 0/0:112,0:112:99:0,307,3558 0/0:103,0:103:99:0,283,3256 0/0:78,0:79:99:0,202,2372 0/0:82,0:82:99:0,223,2624 0/0:77,0:77:99:0,220,2499 0/0:113,0:113:99:0,313,3575 0/0:74,0:74:99:0,196,2274 0/0:75,0:75:99:0,217,2462 0/0:87,0:87:99:0,244,2775 0/0:80,0:80:99:0,205,2377 0/0:83,0:84:99:0,235,2744 11 107427622 . G T 10809.41 . AC=41;AF=0.488;AN=84;BaseQRankSum=-33.149;DP=4119;DS;Dels=0.00;FS=3200.000;HRun=2;HaplotypeScore=3.4478;InbreedingCoeff=-0.9535;MQ=58.38;MQ0=0;MQRankSum=-0.946;QD=2.70;ReadPosRankSum=-29.458 GT:AD:DP:GQ:PL 0/1:38,33:71:99:317,0,1096 0/1:39,31:70:99:154,0,1092 0/1:47,27:75:99:248,0,1323 0/1:90,78:168:99:623,0,2459 0/1:71,76:147:99:642,0,1861 0/1:91,56:147:99:348,0,2607 0/1:75,50:125:99:184,0,2321 0/0:90,22:113:99:0,164,2928 0/1:55,28:83:99:222,0,1482 0/1:49,31:80:99:125,0,1255 0/1:44,22:66:99:139,0,1186 0/1:60,32:92:99:175,0,1609 0/1:35,34:69:99:143,0,867 0/1:32,26:58:99:243,0,785 0/1:124,95:219:99:727,0,3371 0/1:37,24:61:99:134,0,993 0/1:55,24:79:80.29:80,0,1330 0/1:49,45:94:99:311,0,1453 0/1:48,34:82:99:299,0,1304 0/1:84,62:146:65.92:66,0,2160 0/1:59,42:101:99:412,0,1360 0/1:60,33:93:99:140,0,1659 0/1:101,76:178:99:518,0,2949 0/1:70,53:123:99:103,0,2122 0/1:72,68:140:99:330,0,2081 0/1:78,38:116:80.84:81,0,2386 0/1:37,20:57:99:130,0,1003 0/1:67,30:97:61.43:61,0,1804 0/1:41,31:72:99:326,0,1012 0/1:41,30:71:99:269,0,1101 0/1:47,31:78:99:222,0,1355 0/1:67,41:108:99:182,0,1774 0/1:59,35:94:99:120,0,1436 0/1:52,32:84:99:304,0,1338 0/1:54,39:93:99:340,0,1354 0/1:44,28:72:99:234,0,1134 0/1:47,59:106:99:721,0,1075 0/1:49,22:71:34.94:35,0,1302 0/1:45,37:82:99:237,0,1268 0/1:39,37:76:99:425,0,872 0/1:55,27:82:99:158,0,1426 0/1:50,30:80:99:282,0,1286 11 107488916 . A T 101.06 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.191;DP=443;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.3249;InbreedingCoeff=-0.0363;MQ=59.15;MQ0=0;MQRankSum=0.458;QD=7.22;ReadPosRankSum=-0.893 GT:AD:DP:GQ:PL 0/1:4,5:9:99:106,0,125 0/1:3,2:5:56.96:57,0,94 0/0:16,0:16:42.13:0,42,529 0/0:13,0:13:27.09:0,27,362 0/0:9,0:9:24.06:0,24,285 0/0:6,0:6:15.05:0,15,197 0/0:4,0:4:12.04:0,12,149 0/0:9,0:9:21.07:0,21,276 0/0:12,0:12:30.09:0,30,362 0/0:7,0:7:21.06:0,21,247 0/0:11,0:11:33.10:0,33,390 0/0:7,0:7:21.07:0,21,260 0/0:8,0:8:24.07:0,24,290 0/0:9,0:9:27.08:0,27,317 0/0:34,0:34:87.26:0,87,1061 0/0:15,0:15:39.12:0,39,490 0/0:6,0:6:15.04:0,15,175 0/0:12,0:12:27.09:0,27,352 0/0:15,0:15:42.11:0,42,494 0/0:22,0:22:51.16:0,51,666 0/0:19,0:19:51.14:0,51,611 0/0:13,0:13:33.10:0,33,412 0/0:8,0:8:18.06:0,18,231 0/0:7,0:7:15.05:0,15,195 0/0:4,0:4:6.02:0,6,89 0/0:3,0:3:6.02:0,6,76 0/0:8,0:8:24.07:0,24,286 0/0:6,0:6:15.05:0,15,190 0/0:15,0:15:39.12:0,39,477 0/0:12,0:12:30.09:0,30,377 0/0:6,0:6:18.06:0,18,221 0/0:16,0:16:39.12:0,39,490 0/0:14,0:14:39.12:0,39,477 0/0:7,0:7:18.06:0,18,226 0/0:2,0:2:6.02:0,6,71 0/0:4,0:4:12.04:0,12,144 0/0:13,0:13:27.08:0,27,342 0/0:15,0:15:36.11:0,36,454 0/0:11,0:11:30.09:0,30,370 0/0:11,0:11:27.09:0,27,345 0/0:9,0:9:24.07:0,24,295 0/0:11,0:11:30.09:0,30,368 11 107501179 . A G 805.22 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.319;DP=774;Dels=0.00;FS=2.629;HRun=0;HaplotypeScore=0.2086;InbreedingCoeff=-0.0252;MQ=59.05;MQ0=0;MQRankSum=-0.051;QD=14.64;ReadPosRankSum=-0.150 GT:AD:DP:GQ:PL 0/0:16,0:16:48.14:0,48,569 0/0:17,0:17:51.15:0,51,609 0/0:14,0:14:42.13:0,42,529 0/0:21,0:21:57.18:0,57,717 0/0:13,0:13:33.10:0,33,421 0/0:20,0:20:54.17:0,54,704 0/0:16,0:16:48.15:0,48,617 0/0:26,0:26:78.24:0,78,973 0/0:19,0:19:57.16:0,57,671 0/0:16,0:16:45.13:0,45,528 0/0:10,0:10:27.09:0,27,341 0/0:17,0:17:51.15:0,51,608 0/0:11,0:11:33.10:0,33,408 0/0:16,0:16:45.14:0,45,551 0/0:46,0:46:99:0,132,1585 0/0:13,0:13:39.12:0,39,467 0/0:18,0:18:51.16:0,51,628 0/0:21,0:21:54.17:0,54,677 0/0:34,0:34:87.27:0,87,1085 0/0:21,0:21:57.18:0,57,719 0/1:19,13:32:99:404,0,486 0/0:22,0:22:63.19:0,63,772 0/0:15,0:15:42.13:0,42,532 0/0:13,0:13:36.11:0,36,457 0/0:16,0:16:42.13:0,42,539 0/0:15,0:15:42.14:0,42,553 0/0:4,0:4:12.04:0,12,150 0/0:16,0:16:45.14:0,45,554 0/0:17,1:18:51.16:0,51,623 0/0:14,0:14:39.12:0,39,484 0/0:15,0:15:39.12:0,39,498 0/1:9,14:23:99:463,0,268 0/0:21,0:21:60.19:0,60,738 0/0:21,0:21:63.19:0,63,764 0/0:20,0:20:54.16:0,54,654 0/0:19,0:19:57.18:0,57,705 0/0:18,0:18:48.13:0,48,580 0/0:15,0:15:45.14:0,45,551 0/0:19,0:19:51.16:0,51,636 0/0:25,0:25:72.22:0,72,884 0/0:14,0:14:42.13:0,42,509 0/0:14,0:14:39.12:0,39,482 11 107686675 . T C 1547.99 . AC=1;AF=0.012;AN=84;BaseQRankSum=9.641;DP=2933;DS;Dels=0.00;FS=0.824;HRun=0;HaplotypeScore=1.2361;InbreedingCoeff=-0.0120;MQ=59.10;MQ0=0;MQRankSum=0.423;QD=18.00;ReadPosRankSum=0.396 GT:AD:DP:GQ:PL 0/0:65,0:65:99:0,184,2243 0/0:54,0:54:99:0,159,1905 0/0:41,0:41:99:0,114,1430 0/0:120,0:120:99:0,343,4333 0/0:104,0:104:99:0,298,3827 0/0:118,0:118:99:0,346,4473 0/0:88,0:88:99:0,256,3301 0/1:37,49:86:99:1594,0,1167 0/0:61,0:61:99:0,178,2182 0/0:42,0:42:99:0,120,1483 0/0:54,0:54:99:0,153,1876 0/0:47,0:47:99:0,129,1608 0/0:47,0:47:99:0,129,1581 0/0:50,0:50:99:0,141,1740 0/0:179,0:179:99:0,509,6236 0/0:55,0:55:99:0,153,1869 0/0:55,0:55:99:0,162,1980 0/0:60,0:60:99:0,181,2196 0/0:77,0:77:99:0,208,2583 0/0:104,0:105:99:0,274,3427 0/0:83,0:83:99:0,235,2941 0/0:51,0:51:99:0,144,1763 0/0:147,0:147:99:0,415,5314 0/0:96,0:96:99:0,280,3567 0/0:88,0:88:99:0,256,3257 0/0:87,0:87:99:0,244,3122 0/0:50,0:50:99:0,141,1738 0/0:56,0:56:99:0,159,1966 0/0:45,0:45:99:0,132,1597 0/0:44,0:44:99:0,129,1580 0/0:37,0:37:99:0,111,1376 0/0:53,0:53:99:0,153,1893 0/0:59,0:59:99:0,175,2133 0/0:55,0:55:99:0,163,2007 0/0:52,0:52:99:0,150,1866 0/0:57,0:57:99:0,165,2007 0/0:71,0:71:99:0,202,2482 0/0:76,0:76:99:0,208,2549 0/0:62,0:62:99:0,184,2252 0/0:44,0:44:99:0,129,1597 0/0:59,0:59:99:0,175,2160 0/0:53,0:53:99:0,153,1875 11 107992346 . G C 258.98 . AC=10;AF=0.161;AN=62;BaseQRankSum=-1.702;DP=68;Dels=0.00;FS=9.823;HRun=1;HaplotypeScore=0.0560;InbreedingCoeff=0.1472;MQ=59.11;MQ0=0;MQRankSum=-0.846;QD=12.95;ReadPosRankSum=-0.347 GT:AD:DP:GQ:PL 0/0:2,0:2:6.01:0,6,66 0/0:1,0:1:3.01:0,3,33 0/0:1,0:1:3.01:0,3,32 1/1:0,2:2:6.01:58,6,0 0/0:3,0:3:9.03:0,9,110 0/1:1,3:4:29.73:87,0,30 0/1:4,2:6:54.56:55,0,102 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,39 ./. 0/0:1,0:1:3.01:0,3,32 ./. ./. 0/0:3,0:3:6:0,6,62 0/0:2,0:2:6.02:0,6,77 0/0:1,0:1:3.01:0,3,39 ./. ./. 0/0:3,0:4:9.03:0,9,110 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,38 1/1:0,2:2:6.02:69,6,0 ./. ./. 0/0:2,0:2:6.02:0,6,77 0/1:0,1:1:1.76:32,3,0 1/1:0,1:1:3.01:39,3,0 0/0:2,0:2:6.02:0,6,76 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.01:0,6,66 0/0:3,0:3:6.02:0,6,77 0/0:3,0:3:6.02:0,6,77 0/0:1,0:1:3.01:0,3,39 ./. 0/0:3,0:3:6.01:0,6,66 0/0:1,0:1:3.01:0,3,39 ./. ./. ./. 0/0:5,0:5:15.02:0,15,170 0/1:3,1:4:26.54:27,0,102 11 108056003 . GGTT G 186.14 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.125;DP=1208;FS=9.714;HRun=0;HaplotypeScore=100.0673;InbreedingCoeff=-0.0120;MQ=59.27;MQ0=0;MQRankSum=0.278;QD=6.00;ReadPosRankSum=1.012 GT:AD:DP:GQ:PL 0/0:31,0:31:90.29:0,90,1954 0/0:28,0:28:84.29:0,84,1886 0/0:29,0:29:84.29:0,84,1868 0/0:39,0:39:99:0,111,2416 0/0:35,0:35:99:0,99,2183 0/0:27,0:27:75.26:0,75,1699 0/0:31,0:31:90.30:0,90,1945 0/1:24,7:31:99:241,0,1475 0/0:23,0:23:63.22:0,63,1418 0/0:21,0:21:63.22:0,63,1388 0/0:20,0:20:60.21:0,60,1361 0/0:22,0:22:66.23:0,66,1479 0/0:25,0:25:63.22:0,63,1421 0/0:28,0:28:81.28:0,81,1837 0/0:78,0:78:99:0,229,5127 0/0:19,0:19:57.19:0,57,1257 0/0:25,0:25:69.24:0,69,1545 0/0:31,0:31:90.31:0,90,1995 0/0:42,0:42:99:0,123,2735 0/0:39,0:39:99:0,117,2480 0/0:33,0:33:90.31:0,90,2038 0/0:22,0:22:60.20:0,60,1312 0/0:39,0:39:99:0,114,2570 0/0:28,0:28:84.29:0,84,1875 0/0:20,0:20:57.20:0,57,1280 0/0:25,0:24:72.24:0,72,1523 0/0:18,0:18:48.16:0,48,1073 0/0:24,0:23:69.24:0,69,1561 0/0:25,0:25:75.26:0,75,1649 0/0:25,0:25:72.25:0,72,1631 0/0:24,0:24:69.24:0,69,1547 0/0:49,0:49:99:0,135,2949 0/0:24,0:24:63.16:0,63,1372 0/0:25,0:25:69.24:0,69,1564 0/0:23,0:23:69.24:0,69,1565 0/0:17,0:17:51.13:0,51,1097 0/0:42,0:42:99:0,102,2238 0/0:35,0:35:99:0,102,2257 0/0:22,0:22:63.21:0,63,1380 0/0:25,0:25:72.24:0,72,1584 0/0:21,0:21:60.21:0,60,1360 0/0:18,0:18:54.19:0,54,1216 11 108059996 . A G 4.49 . AC=1;AF=0.012;AN=84;BaseQRankSum=-33.050;DP=6041;DS;Dels=0.00;FS=1378.784;HRun=2;HaplotypeScore=2.5528;InbreedingCoeff=-0.0120;MQ=59.46;MQ0=0;MQRankSum=0.361;QD=0.02;ReadPosRankSum=-21.535 GT:AD:DP:GQ:PL 0/0:104,35:139:99:0,230,2915 0/0:77,26:103:82.97:0,83,2162 0/0:78,26:104:99:0,150,2337 0/0:178,56:234:99:0,295,5102 0/0:153,59:212:99:0,252,4590 0/0:161,41:202:99:0,327,4920 0/0:141,36:178:99:0,242,4073 0/0:163,47:210:99:0,430,5373 0/0:95,40:135:99:0,155,2742 0/0:88,27:116:99:0,166,2502 0/0:99,16:115:99:0,119,3038 0/0:93,25:118:75.54:0,76,2737 0/0:90,24:114:99:0,152,2564 0/0:97,31:128:99:0,161,2660 0/1:172,67:239:48.79:49,0,4997 0/0:95,10:105:99:0,209,2985 0/0:106,31:137:99:0,177,3230 0/0:80,26:106:99:0,142,2539 0/0:101,47:149:99:0,141,3154 0/0:132,33:165:99:0,255,3786 0/0:135,45:181:99:0,130,3879 0/0:84,16:100:99:0,189,2545 0/0:180,61:242:99:0,433,5680 0/0:110,32:142:99:0,259,3401 0/0:150,42:192:99:0,311,4702 0/0:152,42:194:99:0,325,4441 0/0:107,20:127:99:0,179,3379 0/0:107,36:143:99:0,100,3073 0/0:92,25:117:99:0,142,2891 0/0:104,27:132:99:0,208,3231 0/0:81,26:107:99:0,150,2258 0/0:140,24:164:99:0,322,4190 0/0:77,19:97:99:0,183,2383 0/0:86,28:115:99:0,183,2791 0/0:112,32:144:99:0,241,3523 0/0:108,29:137:86.83:0,87,3126 0/0:110,30:140:99:0,214,3622 0/0:102,30:132:99:0,140,2841 0/0:78,26:105:99:0,153,2491 0/0:77,25:103:99:0,130,2315 0/0:78,19:97:99:0,194,2265 0/0:91,30:121:99:0,195,2950 11 108124640 . G A 2014.67 . AC=2;AF=0.024;AN=84;BaseQRankSum=-12.988;DP=4152;DS;Dels=0.00;FS=2.605;HRun=1;HaplotypeScore=1.4369;InbreedingCoeff=-0.0244;MQ=59.57;MQ0=0;MQRankSum=-0.646;QD=11.85;ReadPosRankSum=0.319 GT:AD:DP:GQ:PL 0/0:66,0:66:99:0,187,2384 0/0:59,0:59:99:0,160,2048 0/0:78,0:78:99:0,211,2724 0/0:195,0:195:99:0,548,7434 0/0:156,0:157:99:0,439,6020 0/0:170,0:170:99:0,482,6563 0/0:166,0:166:99:0,454,6265 0/0:146,0:146:99:0,412,5658 0/0:89,0:89:99:0,256,3276 0/0:63,0:63:99:0,181,2291 0/0:69,0:70:99:0,199,2549 0/0:71,0:71:99:0,211,2668 0/0:73,0:73:99:0,208,2646 0/0:84,0:84:99:0,235,3018 0/0:250,0:250:99:0,674,8762 0/0:65,0:65:99:0,184,2366 0/0:79,0:79:99:0,217,2772 0/0:65,0:65:99:0,193,2432 0/0:104,0:104:99:0,295,3740 0/0:104,0:104:99:0,286,3660 0/0:108,0:108:99:0,292,3769 0/0:65,0:65:99:0,175,2274 0/0:194,1:195:99:0,521,7501 0/0:139,0:139:99:0,403,5540 0/0:147,0:147:99:0,409,5656 0/0:164,0:165:99:0,464,6330 0/0:54,0:54:99:0,156,2000 0/0:66,0:67:99:0,193,2451 0/0:72,0:72:99:0,208,2646 0/0:87,0:87:99:0,247,3152 0/0:66,0:66:99:0,193,2465 0/0:100,0:100:99:0,256,3341 0/0:82,0:82:99:0,232,2972 0/0:73,0:73:99:0,205,2603 0/0:68,0:68:99:0,202,2565 0/0:72,0:72:99:0,208,2663 0/1:45,46:92:99:1231,0,1385 0/0:80,0:80:99:0,217,2785 0/1:48,30:78:99:846,0,1567 0/0:69,0:69:99:0,193,2445 0/0:60,0:60:99:0,172,2195 0/0:59,0:59:99:0,172,2172 11 108124682 . C T 16.14 . AC=1;AF=0.012;AN=84;BaseQRankSum=-21.656;DP=4401;DS;Dels=0.00;FS=597.528;HRun=2;HaplotypeScore=2.0527;InbreedingCoeff=-0.0135;MQ=59.36;MQ0=0;MQRankSum=-0.168;QD=0.17;ReadPosRankSum=-14.344 GT:AD:DP:GQ:PL 0/0:48,13:61:43.34:0,43,1310 0/0:56,13:69:60.34:0,60,1537 0/0:61,11:72:99:0,162,1942 0/0:195,34:229:99:0,377,5095 0/0:158,18:176:99:0,300,4448 0/0:158,14:173:99:0,354,4790 0/0:139,17:156:99:0,313,3879 0/0:152,17:169:99:0,261,4148 0/0:67,9:77:80.69:0,81,1914 0/0:68,14:82:99:0,108,1843 0/0:80,7:87:99:0,154,2226 0/0:65,13:78:91.50:0,91,1715 0/0:53,18:71:8.81:0,9,1298 0/0:73,14:87:99:0,167,2311 0/0:192,40:232:99:0,260,5242 0/0:57,12:69:99:0,100,1617 0/0:69,12:81:68.05:0,68,1895 0/0:55,11:67:72.55:0,73,1461 0/0:78,26:104:62:0,62,2202 0/0:104,8:112:99:0,241,3120 0/0:79,21:101:99:0,168,2190 0/0:57,8:65:88.04:0,88,1587 0/0:201,27:230:99:0,386,5569 0/0:132,15:147:99:0,243,3554 0/0:151,9:160:99:0,325,4276 0/0:148,18:166:99:0,281,4297 0/0:43,6:49:54.93:0,55,1156 0/0:72,10:82:27.24:0,27,1703 0/0:63,7:71:99:0,109,1935 0/0:68,17:85:99:0,142,1969 0/0:68,8:76:99:0,134,1847 0/0:86,7:93:99:0,153,2403 0/0:77,9:86:99:0,141,2169 0/0:74,10:84:99:0,132,2215 0/0:73,15:88:99:0,124,1969 0/0:92,10:103:99:0,188,2539 0/1:73,23:96:62.23:62,0,1927 0/0:68,13:81:99:0,106,1865 0/0:57,18:75:35.07:0,35,1545 0/0:52,12:64:99:0,103,1474 0/0:73,4:77:99:0,153,1863 0/0:62,7:70:99:0,108,1821 11 108124761 . T C 4516.17 . AC=4;AF=0.048;AN=84;BaseQRankSum=13.019;DP=2729;Dels=0.00;FS=4.213;HRun=1;HaplotypeScore=0.7311;InbreedingCoeff=-0.0500;MQ=59.29;MQ0=0;MQRankSum=0.790;QD=14.52;ReadPosRankSum=-0.988 GT:AD:DP:GQ:PL 0/0:42,0:43:99:0,126,1502 0/0:46,0:46:99:0,132,1599 0/0:39,0:39:99:0,111,1328 0/0:120,0:120:99:0,340,4151 0/0:113,0:113:99:0,334,4088 0/0:107,0:107:99:0,301,3820 0/0:108,0:108:99:0,319,3966 0/0:104,0:104:99:0,295,3635 0/0:55,0:55:99:0,153,1862 0/0:43,0:43:99:0,123,1481 0/0:51,0:51:99:0,141,1717 0/0:47,0:47:99:0,141,1721 0/0:45,0:45:99:0,132,1576 0/0:54,0:54:99:0,156,1903 0/1:82,73:155:99:2207,0,2383 0/0:52,0:52:99:0,153,1854 0/1:28,26:54:99:839,0,858 0/0:45,0:45:99:0,135,1625 0/0:77,0:77:99:0,214,2608 0/0:52,0:52:99:0,141,1751 0/0:75,0:75:99:0,199,2451 0/0:43,0:43:99:0,123,1492 0/0:120,0:120:99:0,340,4151 0/0:111,0:111:99:0,316,3900 0/0:111,0:111:99:0,316,3936 0/0:94,0:94:99:0,262,3279 0/1:17,20:37:99:673,0,473 0/1:37,28:65:99:797,0,1143 0/0:34,0:34:96.26:0,96,1163 0/0:58,0:58:99:0,168,2027 0/0:45,0:45:99:0,132,1618 0/0:66,0:66:99:0,169,2112 0/0:44,0:44:99:0,126,1525 0/0:49,0:50:99:0,141,1714 0/0:54,0:54:99:0,159,1928 0/0:48,0:48:99:0,144,1753 0/0:57,0:57:99:0,162,1931 0/0:52,0:52:99:0,147,1784 0/0:41,0:41:99:0,123,1474 0/0:41,0:41:99:0,120,1449 0/0:39,0:39:99:0,114,1360 0/0:33,0:33:93.29:0,93,1130 11 108143299 . A G 938.86 . 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T C 1608.36 . 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C T 1462.24 . 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C G 36541.53 . 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A G 84763.57 . AC=84;AF=1.000;AN=84;BaseQRankSum=0.710;DP=2681;Dels=0.00;FS=5.750;HRun=0;HaplotypeScore=1.3888;InbreedingCoeff=-0.0000;MQ=59.00;MQ0=0;MQRankSum=1.299;QD=31.62;ReadPosRankSum=1.365 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1510,132,0 1/1:0,67:67:99:1967,174,0 1/1:0,53:53:99:1674,144,0 1/1:0,79:79:99:2570,211,0 1/1:0,77:77:99:2617,217,0 1/1:0,71:71:99:2305,193,0 1/1:0,58:58:99:1924,153,0 1/1:1,73:74:99:2405,172,0 1/1:0,60:60:99:1924,168,0 1/1:0,61:61:99:1871,165,0 1/1:1,46:47:99:1450,105,0 1/1:0,45:45:99:1522,135,0 1/1:0,39:39:99:1196,105,0 1/1:0,56:56:99:1798,159,0 1/1:0,161:163:99:4970,439,0 1/1:0,55:55:99:1731,159,0 1/1:0,51:51:99:1572,138,0 1/1:1,63:64:99:1994,147,0 1/1:0,74:74:99:2356,205,0 1/1:0,96:96:99:3026,268,0 1/1:0,95:95:99:2951,265,0 1/1:0,60:60:99:1845,165,0 1/1:0,93:94:99:3167,259,0 1/1:0,59:59:99:1944,159,0 1/1:0,63:63:99:2109,172,0 1/1:0,48:48:99:1618,132,0 1/1:0,46:47:99:1395,123,0 1/1:0,60:61:99:1947,177,0 1/1:0,49:49:99:1605,144,0 1/1:0,48:49:99:1547,135,0 1/1:0,49:49:99:1572,138,0 1/1:0,72:72:99:2143,189,0 1/1:0,70:70:99:2199,198,0 1/1:0,53:53:99:1664,150,0 1/1:0,54:54:99:1668,147,0 1/1:0,75:75:99:2244,196,0 1/1:0,71:72:99:2206,198,0 1/1:0,61:61:99:1941,168,0 1/1:0,46:46:99:1449,129,0 1/1:0,55:56:99:1774,159,0 1/1:0,49:49:99:1598,144,0 1/1:0,60:60:99:1795,159,0 11 111637077 . G C 113.90 . AC=13;AF=0.155;AN=84;BaseQRankSum=-9.660;DP=1175;Dels=0.00;FS=54.581;HRun=3;HaplotypeScore=1.2267;InbreedingCoeff=-0.2190;MQ=57.28;MQ0=0;MQRankSum=3.860;QD=0.38;ReadPosRankSum=-1.698 GT:AD:DP:GQ:PL 0/1:8,8:17:9.65:10,0,126 0/0:8,10:18:12.03:0,12,141 0/0:7,8:15:15.04:0,15,168 0/0:29,41:70:60.15:0,60,680 0/0:20,36:56:2.04:2,0,421 0/1:21,24:45:38.91:39,0,364 0/0:19,16:35:33.08:0,33,373 0/0:19,22:42:1.68:3,0,389 0/0:9,8:17:24.07:0,24,275 0/1:12,12:24:25.25:25,0,236 0/0:12,14:26:17.08:0,17,174 0/0:12,11:23:2.35:0,2,238 0/1:6,15:21:13.50:13,0,156 0/1:12,12:24:6.35:6,0,261 0/0:23,24:48:15.47:0,15,420 0/0:8,17:25:21.04:0,21,229 0/0:14,12:26:2.84:0,0,315 0/1:5,9:14:17.59:18,0,95 0/1:10,7:17:29.11:29,0,242 0/0:22,20:42:48.11:0,48,541 0/1:14,10:24:25.89:26,0,336 0/0:11,9:20:18.05:0,18,202 0/0:30,38:69:20.13:0,20,747 0/0:13,20:33:30.02:0,30,335 0/0:23,20:43:39.11:0,39,469 0/1:16,15:31:12.16:12,0,341 0/0:6,8:14:15.03:0,15,157 0/1:8,12:20:13.50:13,0,161 0/0:11,13:24:27.06:0,27,297 0/0:13,6:19:21.06:0,21,251 0/1:10,6:16:39.46:39,0,139 0/0:24,15:40:29.43:0,29,556 0/0:10,10:20:18.05:0,18,205 0/0:9,9:18:18.04:0,18,192 0/0:12,14:26:21.05:0,21,230 0/0:13,15:28:27.08:0,27,308 0/0:12,12:24:2.51:0,3,327 0/0:9,9:18:18.01:0,18,184 0/0:8,6:14:18.04:0,18,193 0/1:8,18:26:8.59:9,0,172 0/1:7,11:18:6.63:7,0,160 0/0:13,9:22:27.06:0,27,305 11 111724133 . C T 13106.47 . 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A C 52219.98 . AC=36;AF=0.429;AN=84;BaseQRankSum=35.403;DP=3915;DS;Dels=0.00;FS=5.658;HRun=1;HaplotypeScore=1.1175;InbreedingCoeff=0.0278;MQ=59.45;MQ0=0;MQRankSum=0.007;QD=19.68;ReadPosRankSum=-1.736 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2734,214,0 0/1:53,30:83:99:882,0,1559 0/0:65,0:65:99:0,184,2237 0/1:61,53:114:99:1639,0,1697 0/1:56,65:121:99:2035,0,1686 0/1:52,39:91:99:1200,0,1562 0/1:61,52:113:99:1540,0,1714 1/1:1,87:88:99:3139,193,0 0/1:53,53:106:99:1579,0,1445 1/1:0,77:77:99:2602,205,0 0/0:86,0:86:99:0,235,2828 0/1:53,46:99:99:1358,0,1525 0/1:41,32:73:99:920,0,1179 0/0:89,0:89:99:0,241,2995 0/0:214,0:214:99:0,554,6858 0/1:23,24:47:99:740,0,684 0/0:86,1:87:99:0,206,2889 0/1:54,37:91:99:1047,0,1523 1/1:0,124:125:99:4123,319,0 0/1:47,56:103:99:1678,0,1330 0/1:81,58:139:99:1453,0,2378 0/0:80,0:80:99:0,217,2651 0/1:65,63:128:99:2057,0,1918 0/0:81,0:81:99:0,220,2765 0/0:92,0:92:99:0,247,3131 0/1:47,46:93:99:1352,0,1290 0/0:71,0:71:99:0,199,2442 0/1:40,51:91:99:1446,0,1124 0/0:77,0:77:99:0,211,2565 0/0:85,1:86:99:0,199,2847 0/0:58,0:58:99:0,166,2039 1/1:0,96:96:99:3251,250,0 0/1:38,36:74:99:1069,0,1080 1/1:1,87:88:99:2982,201,0 1/1:1,83:84:99:2819,186,0 0/1:39,44:83:99:1330,0,1067 1/1:1,89:90:99:3064,241,0 0/1:43,53:97:99:1541,0,1239 0/1:42,36:78:99:1118,0,1255 0/0:92,0:92:99:0,262,3224 0/0:84,0:84:99:0,223,2768 0/1:49,49:98:99:1524,0,1365 11 111782284 . C T 247.86 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.105;DP=868;Dels=0.00;FS=2.548;HRun=0;HaplotypeScore=0.4376;InbreedingCoeff=-0.0245;MQ=59.27;MQ0=0;MQRankSum=-0.293;QD=9.18;ReadPosRankSum=-1.493 GT:AD:DP:GQ:PL 0/0:18,0:18:51.13:0,51,625 0/0:12,0:12:33.10:0,33,410 0/0:16,0:16:45.14:0,45,576 0/0:36,0:36:90.30:0,90,1222 0/0:38,0:38:93.31:0,93,1269 0/0:26,0:26:69.22:0,69,929 0/0:22,0:22:60.20:0,60,829 0/0:23,0:23:63.20:0,63,820 0/1:10,9:19:99:250,0,292 0/1:5,3:8:60.12:60,0,142 0/0:15,0:15:36.11:0,36,473 0/0:19,0:19:48.15:0,48,614 0/0:19,0:19:48.15:0,48,611 0/0:12,0:12:36.11:0,36,450 0/0:45,0:45:99:0,108,1403 0/0:12,0:12:36.11:0,36,452 0/0:32,0:32:84.27:0,84,1076 0/0:20,0:20:57.18:0,57,716 0/0:25,0:25:57.18:0,57,746 0/0:23,0:23:60.19:0,60,780 0/0:26,0:26:69.21:0,69,870 0/0:9,0:9:27.07:0,27,323 0/0:42,0:42:99:0,108,1436 0/0:17,0:17:42.14:0,42,578 0/0:31,0:31:72.23:0,72,976 0/0:30,0:30:81.26:0,81,1097 0/0:16,0:16:39.13:0,39,516 0/0:11,0:11:33.10:0,33,407 0/0:13,0:13:30.10:0,30,396 0/0:20,1:21:54.10:0,54,665 0/0:16,0:16:42.14:0,42,558 0/0:16,0:16:42.12:0,42,527 0/0:12,0:12:30.10:0,30,389 0/0:12,0:12:33.11:0,33,428 0/0:11,0:11:33.10:0,33,409 0/0:20,0:20:57.17:0,57,700 0/0:30,0:30:78.25:0,78,997 0/0:17,0:17:45.14:0,45,564 0/0:18,0:18:48.14:0,48,596 0/0:19,0:19:54.17:0,54,675 0/0:25,0:25:69.21:0,69,864 0/0:16,0:16:45.15:0,45,580 11 111853106 . G GC 37655.63 . 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T C 16932.58 . AC=27;AF=0.321;AN=84;BaseQRankSum=-9.509;DP=2171;Dels=0.00;FS=14.636;HRun=0;HaplotypeScore=0.7628;InbreedingCoeff=-0.1462;MQ=59.33;MQ0=0;MQRankSum=-0.259;QD=14.06;ReadPosRankSum=-1.628 GT:AD:DP:GQ:PL 0/0:37,0:37:93.27:0,93,1140 0/0:38,0:38:99:0,105,1267 0/1:20,16:36:99:424,0,529 0/0:102,0:102:99:0,265,3221 0/0:78,0:78:99:0,208,2573 0/1:33,29:62:99:732,0,952 0/1:36,32:68:99:882,0,1027 0/1:30,27:57:99:718,0,834 0/1:27,33:60:99:730,0,772 0/0:40,0:40:99:0,108,1283 0/1:22,15:37:99:350,0,645 0/1:22,22:44:99:579,0,634 0/0:39,0:39:99:0,99,1189 1/1:0,46:46:99:1451,129,0 0/1:86,61:148:99:1551,0,2213 0/1:19,16:35:99:421,0,545 0/0:37,0:37:99:0,99,1216 0/1:22,23:45:99:620,0,621 0/0:69,0:69:99:0,187,2269 0/0:67,0:67:99:0,184,2206 0/1:33,23:57:99:574,0,898 0/1:14,24:38:99:656,0,361 0/0:100,0:101:99:0,265,3273 0/1:22,22:44:99:586,0,625 0/1:24,29:53:99:793,0,641 0/1:27,28:56:99:729,0,760 0/1:18,12:30:99:309,0,519 0/1:9,18:27:99:511,0,234 0/1:24,24:48:99:624,0,632 0/1:24,25:49:99:688,0,671 1/1:0,34:34:90.23:1000,90,0 0/0:67,0:67:99:0,175,2138 0/0:42,1:43:83.92:0,84,1354 0/0:39,0:40:99:0,111,1302 0/0:36,0:36:96.28:0,96,1159 0/0:56,0:56:99:0,156,1844 0/1:33,21:54:99:550,0,844 1/1:0,34:34:90.22:1006,90,0 0/1:25,17:42:99:446,0,661 0/0:39,0:39:99:0,108,1289 0/0:31,0:31:81.23:0,81,984 0/0:46,0:47:99:0,132,1585 11 111941959 . G A 14538.95 . AC=9;AF=0.107;AN=84;BaseQRankSum=-31.496;DP=6268;DS;Dels=0.00;FS=0.331;HRun=0;HaplotypeScore=1.5576;InbreedingCoeff=-0.1200;MQ=59.66;MQ0=0;MQRankSum=-0.501;QD=13.68;ReadPosRankSum=-1.324 GT:AD:DP:GQ:PL 0/1:63,53:116:99:1398,0,1952 0/1:61,74:135:99:2148,0,1764 0/0:109,0:110:99:0,310,3932 0/0:244,0:244:99:0,686,9305 0/0:245,0:245:99:0,716,9748 0/0:250,0:250:99:0,716,9699 0/0:243,0:244:99:0,698,9508 0/0:229,0:229:99:0,653,8876 0/0:121,0:121:99:0,331,4233 0/0:115,0:115:99:0,325,4084 0/0:121,0:121:99:0,349,4433 0/0:114,0:114:99:0,319,4063 0/0:114,0:114:99:0,328,4113 0/0:111,0:111:99:0,304,3906 0/0:250,0:250:99:0,680,8694 0/0:101,0:101:99:0,274,3482 0/0:107,1:108:99:0,266,3772 0/0:139,1:140:99:0,371,4999 0/1:81,73:155:99:2084,0,2457 0/1:88,68:157:99:1755,0,2672 0/0:167,0:167:99:0,448,5773 0/0:119,0:119:99:0,331,4190 0/0:236,0:238:99:0,677,9259 0/0:234,1:235:99:0,639,9020 0/0:246,0:246:99:0,698,9446 0/0:232,0:232:99:0,647,8851 0/1:38,53:91:99:1577,0,1142 0/0:137,1:139:99:0,371,5034 0/1:47,35:82:99:969,0,1473 0/0:118,0:119:99:0,328,4174 0/0:106,0:106:99:0,301,3818 0/0:157,0:157:99:0,445,5724 0/0:110,0:110:99:0,304,3844 0/1:56,51:107:99:1461,0,1769 0/1:48,51:99:99:1515,0,1365 0/1:63,58:121:99:1632,0,1994 0/0:145,0:145:99:0,403,5038 0/0:117,0:117:99:0,337,4278 0/0:110,0:110:99:0,322,4059 0/0:142,0:142:99:0,412,5231 0/0:87,1:88:99:0,218,3141 0/0:118,0:118:99:0,340,4349 11 111959625 . C T 911.96 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.201;DP=2905;Dels=0.00;FS=7.216;HRun=0;HaplotypeScore=1.0486;InbreedingCoeff=-0.0120;MQ=50.23;MQ0=38;MQRankSum=-1.289;QD=11.54;ReadPosRankSum=-1.208 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,150,1680 0/0:57,0:57:99:0,153,1689 0/0:52,0:52:99:0,144,1598 0/0:136,0:136:99:0,340,4285 0/0:98,0:98:99:0,268,3318 0/0:76,0:76:99:0,214,2594 0/0:91,0:91:99:0,241,3008 0/1:38,41:79:99:958,0,1019 0/0:55,0:55:99:0,153,1762 0/0:57,0:57:99:0,150,1716 0/0:53,0:54:99:0,144,1692 0/0:47,0:47:99:0,132,1474 0/0:48,0:48:99:0,132,1429 0/0:42,0:42:99:0,123,1368 0/0:215,0:215:99:0,559,6581 0/0:54,0:54:99:0,147,1705 0/0:62,0:62:99:0,165,1858 0/0:70,0:70:99:0,198,2229 0/0:81,0:81:99:0,220,2493 0/0:82,0:82:99:0,229,2669 0/0:82,0:82:99:0,217,2536 0/0:50,0:50:99:0,129,1533 0/0:151,0:151:99:0,412,5160 0/0:79,0:79:99:0,214,2658 0/0:79,0:79:99:0,208,2657 0/0:78,0:78:99:0,226,2720 0/0:44,0:44:99:0,123,1381 0/0:53,0:53:99:0,129,1526 0/0:44,0:44:99:0,120,1367 0/0:53,0:53:99:0,138,1558 0/0:60,0:60:99:0,162,1849 0/0:81,0:81:99:0,208,2485 0/0:40,0:40:99:0,114,1301 0/0:44,0:44:99:0,123,1393 0/0:59,0:59:99:0,159,1833 0/0:51,0:51:99:0,129,1452 0/0:80,0:80:99:0,219,2468 0/0:54,0:54:99:0,150,1699 0/0:45,0:45:99:0,129,1487 0/0:62,0:62:99:0,174,2017 0/0:55,0:55:99:0,150,1716 0/0:52,0:52:99:0,141,1628 11 112014328 . G A 107.69 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.256;DP=643;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3677;InbreedingCoeff=-0.0131;MQ=58.98;MQ0=0;MQRankSum=0.531;QD=10.77;ReadPosRankSum=0.539 GT:AD:DP:GQ:PL 0/0:15,0:16:42.11:0,42,462 0/0:19,0:19:54.11:0,54,578 0/0:12,0:12:33.09:0,33,373 0/0:23,0:23:60.18:0,60,740 0/0:25,0:25:69.20:0,69,838 0/0:14,0:14:39.10:0,39,457 0/0:15,0:15:42.13:0,42,517 0/0:23,0:23:57.17:0,57,705 0/0:18,0:18:48.11:0,48,551 0/0:15,0:15:39.11:0,39,460 0/1:5,5:10:99:154,0,134 0/0:13,0:13:39.10:0,39,424 0/0:20,0:20:54.13:0,54,597 0/0:15,0:15:39.10:0,39,444 0/0:43,0:43:99:0,108,1280 0/0:14,0:14:36.10:0,36,407 0/0:9,0:9:21.06:0,21,239 0/0:13,0:13:33.07:0,33,374 0/0:16,0:16:45.08:0,45,480 0/0:21,0:21:51.14:0,51,592 0/0:15,0:15:42.11:0,42,465 0/0:14,0:14:36.11:0,36,439 0/0:32,0:32:87.27:0,87,1087 0/0:14,0:14:39.11:0,39,458 0/0:14,0:14:42.13:0,42,525 0/0:17,0:17:48.14:0,48,593 0/0:7,0:7:18.05:0,18,215 0/0:10,0:10:27.07:0,27,312 0/0:5,0:5:15.04:0,15,168 0/0:10,0:10:30.08:0,30,330 0/0:11,0:11:33.08:0,33,359 0/0:21,0:21:48.13:0,48,567 0/0:6,0:6:18.05:0,18,197 0/0:9,0:9:24.07:0,24,287 0/0:12,0:12:36.09:0,36,403 0/0:13,0:13:33.08:0,33,372 0/0:16,0:16:45.12:0,45,496 0/0:13,0:13:39.10:0,39,430 0/0:12,0:12:33.09:0,33,379 0/0:22,0:22:63.17:0,63,697 0/0:7,0:7:21.05:0,21,230 0/0:9,0:9:27.05:0,27,291 11 112020916 . T G 21803.44 . AC=33;AF=0.393;AN=84;BaseQRankSum=12.926;DP=1835;Dels=0.00;FS=12.511;HRun=1;HaplotypeScore=0.3935;InbreedingCoeff=0.1514;MQ=59.45;MQ0=0;MQRankSum=-0.894;QD=20.82;ReadPosRankSum=-1.832 GT:AD:DP:GQ:PL 1/1:0,18:18:51.16:641,51,0 1/1:0,34:35:99:1234,102,0 0/1:21,13:34:99:383,0,678 0/1:23,25:48:99:835,0,656 0/1:19,27:46:99:946,0,574 1/1:0,64:64:99:2433,184,0 1/1:0,47:47:99:1806,135,0 0/1:35,24:59:99:732,0,1050 0/1:21,15:36:99:429,0,637 0/0:41,0:41:99:0,117,1426 0/1:25,16:41:99:417,0,806 0/1:23,16:39:99:439,0,732 1/1:0,36:36:96.28:1190,96,0 0/1:15,19:34:99:587,0,433 0/0:84,0:84:99:0,238,2923 0/1:14,17:31:99:530,0,410 0/0:34,0:34:99:0,99,1241 0/1:22,23:45:99:571,0,669 0/0:68,0:68:99:0,181,2258 0/0:74,0:74:99:0,208,2581 0/1:31,39:70:99:1082,0,922 0/1:17,17:34:99:479,0,510 0/0:52,0:52:99:0,147,1855 0/1:24,37:62:99:1200,0,688 0/1:28,22:50:99:666,0,876 0/0:58,1:59:99:0,120,1954 0/0:29,0:29:84.26:0,84,1028 0/0:24,0:24:66.20:0,66,807 0/0:28,0:28:81.26:0,81,1015 0/1:17,20:37:99:626,0,516 1/1:0,26:26:78.23:978,78,0 0/0:59,0:59:99:0,163,2024 0/0:35,0:35:99:0,102,1245 1/1:2,33:35:28.36:1130,28,0 0/1:24,14:38:99:379,0,734 1/1:0,45:45:99:1636,132,0 0/0:66,0:66:99:0,187,2304 0/0:28,0:28:84.25:0,84,1020 0/0:32,0:32:93.29:0,93,1136 0/0:28,0:28:81.26:0,81,1023 0/1:21,15:37:99:454,0,641 0/0:45,2:47:66.65:0,67,1583 11 112041245 . A G 339.77 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.085;DP=2018;Dels=0.00;FS=10.653;HRun=1;HaplotypeScore=0.3981;InbreedingCoeff=-0.0120;MQ=57.84;MQ0=0;MQRankSum=0.484;QD=10.62;ReadPosRankSum=-1.094 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,120,1424 0/0:33,0:33:96.26:0,96,1127 0/0:33,0:33:96.29:0,96,1144 0/0:80,0:80:99:0,226,2734 0/0:80,0:80:99:0,241,2861 0/0:86,0:86:99:0,250,3096 0/0:83,0:83:99:0,235,2934 0/0:95,0:95:99:0,265,3218 0/0:25,0:25:72.22:0,72,856 0/0:23,0:23:66.19:0,66,774 0/0:27,0:27:78.21:0,78,909 0/0:35,0:35:99:0,99,1193 0/1:18,14:32:99:386,0,500 0/0:19,0:19:54.16:0,54,633 0/0:142,0:142:99:0,397,4669 0/0:28,0:28:84.25:0,84,998 0/0:31,0:31:93.28:0,93,1102 0/0:36,0:36:99:0,102,1224 0/0:61,0:61:99:0,175,2127 0/0:52,0:52:99:0,147,1770 0/0:45,0:45:99:0,132,1582 0/0:21,0:21:63.17:0,63,725 0/0:113,0:113:99:0,328,3935 0/0:75,0:75:99:0,223,2700 0/0:79,0:79:99:0,232,2847 0/0:69,1:70:99:0,205,2471 0/0:23,0:23:66.20:0,66,784 0/0:33,0:33:93.28:0,93,1101 0/0:28,0:28:81.24:0,81,953 0/0:38,1:39:74.35:0,74,1261 0/0:31,0:31:93.27:0,93,1109 0/0:54,0:54:99:0,147,1831 0/0:32,0:32:93.28:0,93,1108 0/0:45,0:45:99:0,132,1590 0/0:36,0:36:99:0,105,1256 0/0:35,0:35:99:0,105,1267 0/0:37,1:38:99:0,99,1173 0/0:32,0:32:96.28:0,96,1108 0/0:30,0:30:87.26:0,87,1043 0/0:50,0:50:99:0,144,1701 0/0:29,0:29:87.25:0,87,1010 0/0:39,0:39:99:0,114,1360 11 112085604 . T G 179.63 . 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GC G 17849.87 . 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T C 18245.25 . AC=84;AF=1.000;AN=84;DP=513;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2189;InbreedingCoeff=-0.0018;MQ=51.49;MQ0=0;QD=35.57 GT:AD:DP:GQ:PL 1/1:0,10:10:30.09:371,30,0 1/1:0,14:14:39.12:465,39,0 1/1:0,14:14:39.08:449,39,0 1/1:0,11:11:33.07:401,33,0 1/1:0,15:16:45.14:591,45,0 1/1:0,7:7:21.07:272,21,0 1/1:0,7:7:21.05:249,21,0 1/1:0,14:14:39.12:477,39,0 1/1:0,15:15:42.13:529,42,0 1/1:0,10:10:30.09:366,30,0 1/1:0,10:10:30.09:371,30,0 1/1:0,10:10:30.09:367,30,0 1/1:0,11:11:30.09:345,30,0 1/1:0,7:7:21.06:239,21,0 1/1:0,40:40:99:1424,120,0 1/1:0,6:6:18.06:226,18,0 1/1:0,9:9:27.08:329,27,0 1/1:0,8:8:24.07:294,24,0 1/1:0,23:23:69.21:843,69,0 1/1:0,24:24:69.21:841,69,0 1/1:0,21:21:60.18:724,60,0 1/1:0,12:12:33.08:396,33,0 1/1:0,11:11:33.10:405,33,0 1/1:0,9:9:27.08:329,27,0 1/1:0,6:6:18.06:245,18,0 1/1:0,6:6:18.03:219,18,0 1/1:0,6:6:18.03:206,18,0 1/1:0,13:13:39.12:478,39,0 1/1:0,11:11:33.10:407,33,0 1/1:0,10:10:27.08:334,27,0 1/1:0,9:9:27.08:324,27,0 1/1:0,13:13:39.10:461,39,0 1/1:0,16:16:48.13:571,48,0 1/1:0,11:11:33.10:400,33,0 1/1:0,5:5:15.04:176,15,0 1/1:0,14:14:39.12:486,39,0 1/1:0,19:19:54.16:661,54,0 1/1:0,14:14:42.13:508,42,0 1/1:0,14:14:42.13:508,42,0 1/1:0,9:9:24.08:308,24,0 1/1:0,6:6:18.06:223,18,0 1/1:0,12:12:36.11:429,36,0 11 112832358 . T C 18383.27 . AC=84;AF=1.000;AN=84;DP=513;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2616;InbreedingCoeff=-0.0016;MQ=51.69;MQ0=0;QD=35.83 GT:AD:DP:GQ:PL 1/1:0,10:10:30.09:369,30,0 1/1:0,14:14:36.11:429,36,0 1/1:0,13:13:36.08:426,36,0 1/1:0,11:11:33.09:424,33,0 1/1:0,14:14:42.13:545,42,0 1/1:0,6:6:18.06:233,18,0 1/1:0,7:7:21.06:252,21,0 1/1:0,14:14:39.12:491,39,0 1/1:0,14:14:39.12:494,39,0 1/1:0,10:10:30.09:371,30,0 1/1:0,9:9:27.09:344,27,0 1/1:0,11:11:33.09:397,33,0 1/1:0,11:11:30.09:352,30,0 1/1:0,7:7:21.06:252,21,0 1/1:0,42:42:99:1428,120,0 1/1:0,7:7:21.07:263,21,0 1/1:0,9:9:27.08:332,27,0 1/1:0,8:8:24.08:301,24,0 1/1:0,23:23:69.21:837,69,0 1/1:0,24:24:72.20:877,72,0 1/1:0,22:22:66.20:808,66,0 1/1:0,11:11:30.09:375,30,0 1/1:0,11:11:33.09:406,33,0 1/1:0,9:9:27.08:332,27,0 1/1:0,7:7:21.07:279,21,0 1/1:0,7:7:21.07:271,21,0 1/1:0,8:8:21.05:238,21,0 1/1:0,11:11:33.10:411,33,0 1/1:0,10:10:30.09:377,30,0 1/1:0,10:10:30.09:369,30,0 1/1:0,9:9:27.08:328,27,0 1/1:0,15:15:42.13:516,42,0 1/1:0,16:16:48.14:579,48,0 1/1:0,12:12:36.11:437,36,0 1/1:0,5:5:15.05:180,15,0 1/1:0,14:14:39.12:493,39,0 1/1:0,19:19:54.17:667,54,0 1/1:0,12:12:36.11:440,36,0 1/1:0,15:15:45.13:541,45,0 1/1:0,9:9:24.08:308,24,0 1/1:0,6:6:18.06:223,18,0 1/1:0,11:11:33.09:387,33,0 11 113078035 . C T 3615.50 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.834;DP=3680;Dels=0.00;FS=8.069;HRun=1;HaplotypeScore=2.4889;InbreedingCoeff=-0.0244;MQ=59.27;MQ0=0;MQRankSum=-0.974;QD=12.47;ReadPosRankSum=0.557 GT:AD:DP:GQ:PL 0/0:65,0:65:99:0,174,2046 0/0:55,0:55:99:0,141,1671 0/0:57,0:57:99:0,165,1916 0/0:124,0:124:99:0,289,3732 0/0:145,0:145:99:0,358,4660 0/0:96,0:96:99:0,247,3207 0/0:93,0:93:99:0,235,3024 0/0:102,0:102:99:0,250,3271 0/0:58,1:59:99:0,126,1709 0/0:53,0:53:99:0,141,1642 0/0:67,0:67:99:0,168,2012 0/0:63,0:63:99:0,168,1976 0/0:62,0:62:99:0,162,1938 0/0:65,0:65:99:0,181,2102 0/1:126,106:232:99:2848,0,3096 0/1:29,29:58:99:768,0,761 0/0:75,0:75:99:0,193,2310 0/0:54,0:54:99:0,144,1644 0/0:140,0:140:99:0,379,4319 0/0:147,0:147:99:0,376,4517 0/0:130,1:131:99:0,334,3947 0/0:78,0:78:99:0,208,2435 0/0:151,0:151:99:0,376,4924 0/0:83,0:83:99:0,202,2646 0/0:112,0:112:99:0,271,3511 0/0:85,0:85:99:0,214,2749 0/0:56,0:56:99:0,150,1765 0/0:65,0:65:99:0,162,1944 0/0:61,0:61:99:0,159,1931 0/0:72,0:72:99:0,187,2180 0/0:53,0:53:99:0,150,1745 0/0:147,0:147:99:0,376,4537 0/0:110,0:110:99:0,268,3235 0/0:50,0:51:99:0,141,1641 0/0:65,0:65:99:0,183,2076 0/0:60,0:60:99:0,159,1898 0/0:143,0:143:99:0,379,4383 0/0:71,0:71:99:0,177,2080 0/0:58,0:58:99:0,153,1824 0/0:86,0:86:99:0,229,2670 0/0:59,0:59:99:0,156,1866 0/0:71,0:71:99:0,187,2196 11 113078047 . C T 1653.48 . AC=2;AF=0.024;AN=84;BaseQRankSum=-10.097;DP=3363;Dels=0.00;FS=1.056;HRun=1;HaplotypeScore=2.6362;InbreedingCoeff=-0.0244;MQ=59.38;MQ0=0;MQRankSum=-0.359;QD=14.63;ReadPosRankSum=0.575 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,175,2209 0/0:51,0:51:99:0,135,1710 0/0:53,0:53:99:0,141,1809 0/0:122,0:122:99:0,301,4049 0/0:135,0:135:99:0,334,4566 0/0:81,0:81:99:0,217,2898 0/0:92,0:92:99:0,229,3069 0/0:95,0:95:99:0,247,3313 0/0:46,0:46:99:0,120,1551 0/0:51,0:51:99:0,144,1786 0/0:60,0:60:99:0,159,2020 0/0:57,0:57:99:0,163,2040 0/0:62,0:63:99:0,159,2024 0/0:70,0:70:99:0,190,2396 0/0:200,0:201:99:0,527,6750 0/0:48,0:48:99:0,120,1541 0/0:72,0:72:99:0,202,2537 0/0:55,0:55:99:0,150,1907 0/0:117,0:117:99:0,328,4077 0/0:140,0:140:99:0,334,4373 0/0:124,0:124:99:0,331,4207 0/0:71,0:71:99:0,199,2496 0/0:128,0:128:99:0,331,4454 0/0:78,0:78:99:0,199,2695 0/0:108,0:108:99:0,244,3387 0/0:82,0:82:99:0,208,2791 0/1:22,31:53:99:766,0,689 0/1:25,35:60:99:950,0,684 0/0:57,0:57:99:0,156,1978 0/0:56,0:56:99:0,153,1919 0/0:55,0:55:99:0,153,1920 0/0:141,0:141:99:0,361,4672 0/0:94,0:95:99:0,259,3236 0/0:53,0:53:99:0,141,1799 0/0:62,0:62:99:0,178,2244 0/0:52,0:52:99:0,138,1782 0/0:120,0:120:99:0,337,4250 0/0:59,0:59:99:0,166,2067 0/0:53,0:53:99:0,153,1937 0/0:73,0:73:99:0,199,2539 0/0:45,0:45:99:0,123,1561 0/0:65,0:65:99:0,172,2190 11 113078586 . G A 572.10 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.620;DP=1690;Dels=0.00;FS=1.721;HRun=1;HaplotypeScore=0.8458;InbreedingCoeff=-0.0120;MQ=58.96;MQ0=0;MQRankSum=0.017;QD=15.46;ReadPosRankSum=1.077 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,99,1162 0/0:35,0:37:99:0,99,1138 0/0:30,0:30:84.24:0,84,992 0/0:34,0:34:84.27:0,84,1113 0/0:26,0:26:69.22:0,69,893 0/0:14,0:14:39.12:0,39,487 0/0:24,0:24:60.19:0,60,779 0/0:18,0:18:48.15:0,48,632 0/0:36,0:36:90.24:0,90,1089 0/0:37,0:39:99:0,105,1250 0/0:33,0:33:87.23:0,87,1008 0/0:48,0:48:99:0,132,1598 0/0:35,0:35:84.25:0,84,1024 0/0:40,0:40:99:0,105,1264 0/0:111,0:111:99:0,280,3369 0/0:26,0:26:69.20:0,69,821 0/0:38,0:38:99:0,105,1247 0/1:14,23:37:99:618,0,339 0/0:70,0:70:99:0,181,2181 0/0:86,0:86:99:0,229,2689 0/0:90,0:90:99:0,229,2723 0/0:41,0:41:99:0,114,1354 0/0:31,0:32:78.25:0,78,1016 0/0:20,0:20:51.16:0,51,651 0/0:27,0:27:69.22:0,69,903 0/0:23,0:23:60.18:0,60,770 0/0:27,0:27:66.19:0,66,785 0/0:45,0:45:99:0,117,1407 0/0:35,0:35:96.25:0,96,1120 0/0:39,0:39:99:0,102,1214 0/0:26,0:26:69.21:0,69,845 0/0:48,0:48:99:0,132,1563 0/0:35,0:35:90.25:0,90,1081 0/0:27,0:27:78.18:0,78,876 0/0:47,0:47:99:0,126,1506 0/0:50,0:50:99:0,129,1580 0/0:76,0:76:99:0,183,2209 0/0:40,0:40:93.28:0,93,1176 0/0:28,0:28:78.18:0,78,908 0/0:39,0:39:99:0,108,1254 0/0:42,0:42:99:0,117,1379 0/0:35,0:35:96.28:0,96,1152 11 113114313 . C G 915.65 . 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T C 59271.04 . 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G A 722.88 . 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A C 53748.05 . 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G C 24.23 . 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A C 65008.48 . 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A C 2006.53 . 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T C 3624.78 . 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A ACCCCCCCCC 1324.26 . AC=20;AF=0.238;AN=84;BaseQRankSum=9.387;DP=4035;DS;FS=1095.488;HRun=2;HaplotypeScore=820.9899;InbreedingCoeff=-0.3298;MQ=57.46;MQ0=0;MQRankSum=5.859;QD=0.69;ReadPosRankSum=-29.910 GT:AD:DP:GQ:PL 0/0:78,0:78:6.99:0,7,1859 0/0:100,0:100:2.57:1,0,3139 0/1:80,0:80:14.97:15,0,2591 0/1:70,0:122:31.43:31,0,3044 0/1:83,0:157:99:151,0,3350 0/0:62,0:99:72.57:0,73,3142 0/0:57,0:86:43.57:0,44,2476 0/0:68,1:90:53.78:0,54,2333 0/0:92,0:92:17.16:0,17,2189 0/1:87,0:86:99:101,0,2581 0/1:72,0:71:99:144,0,1819 0/0:72,0:72:42.77:0,43,2550 0/1:61,0:61:17.84:18,0,1665 0/1:85,0:85:24.83:25,0,2131 0/0:154,0:226:99:0,118,7220 0/1:91,0:90:84.93:85,0,2407 0/0:78,0:78:44.41:0,44,1986 0/1:70,0:69:99:120,0,1546 0/1:60,0:90:35.99:36,0,2008 0/0:150,0:152:40.21:0,40,5337 0/1:92,0:138:99:153,0,3133 0/0:119,0:119:99:0,116,3638 0/1:100,0:170:48.80:49,0,3786 0/0:71,0:99:79.49:0,79,2681 0/1:76,0:111:34.64:35,0,3064 0/0:74,0:79:41.76:0,42,2727 0/1:65,0:64:75:75,0,1291 0/0:70,0:70:10.35:0,10,3051 0/1:59,0:59:75.10:75,0,1600 0/0:64,0:64:16.34:0,16,2538 0/0:64,0:64:6.68:0,7,2288 0/0:121,1:129:99:0,102,4723 0/1:117,0:117:35.46:35,0,3885 0/0:87,0:87:75.52:0,76,2471 0/1:73,0:73:99:159,0,1968 0/0:80,0:80:66.70:0,67,2308 0/1:89,0:106:99:118,0,2380 0/1:80,0:80:68.83:69,0,1950 0/0:86,0:86:58.11:0,58,2861 0/1:72,0:71:7.80:8,0,2048 0/0:70,0:70:56.26:0,56,2567 0/0:76,0:76:24.58:0,25,2236 11 115085467 . A C 8481.52 . AC=5;AF=0.060;AN=84;BaseQRankSum=15.672;DP=4752;DS;Dels=0.00;FS=2.674;HRun=1;HaplotypeScore=2.5021;InbreedingCoeff=-0.0633;MQ=59.48;MQ0=0;MQRankSum=0.842;QD=14.85;ReadPosRankSum=0.227 GT:AD:DP:GQ:PL 0/0:83,0:84:99:0,238,2821 0/0:78,0:78:99:0,205,2486 0/0:96,0:96:99:0,262,3164 0/0:246,0:246:99:0,647,7981 0/0:198,0:198:99:0,506,6292 0/0:152,0:152:99:0,391,5003 0/0:166,0:166:99:0,442,5570 0/0:193,0:193:99:0,497,6242 0/0:91,0:91:99:0,238,2858 0/0:66,0:66:99:0,178,2137 0/0:89,0:89:99:0,250,3003 0/0:109,0:109:99:0,286,3458 0/0:62,0:62:99:0,174,2076 0/0:90,0:90:99:0,253,3021 0/1:119,127:246:99:3673,0,3096 0/1:36,36:72:99:1103,0,934 0/0:89,0:89:99:0,229,2783 0/0:78,1:79:99:0,220,2632 0/0:105,0:105:99:0,280,3399 0/0:106,0:106:99:0,286,3434 0/0:111,0:112:99:0,289,3481 0/0:67,0:67:99:0,181,2150 0/0:250,0:250:99:0,635,7895 0/0:143,0:143:99:0,364,4621 0/0:151,0:151:99:0,385,4812 0/0:166,0:166:99:0,415,5242 0/0:61,0:61:99:0,169,2045 0/0:96,0:96:99:0,253,3066 0/0:66,0:66:99:0,175,2112 0/0:89,0:89:99:0,226,2754 0/0:82,0:82:99:0,235,2840 0/0:100,0:100:99:0,253,3143 0/0:84,0:84:99:0,220,2681 0/0:110,0:110:99:0,310,3731 0/1:44,50:94:99:1468,0,1183 0/0:107,1:108:99:0,277,3414 0/0:101,2:103:99:0,256,3140 0/0:115,0:115:99:0,292,3546 0/0:84,0:84:99:0,238,2857 0/1:40,42:82:99:1226,0,1132 0/1:43,34:77:99:1013,0,1177 0/0:95,0:95:99:0,265,3169 11 116655600 . G A 1263.40 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.602;DP=2449;Dels=0.00;FS=3.313;HRun=0;HaplotypeScore=0.8252;InbreedingCoeff=-0.0244;MQ=59.28;MQ0=0;MQRankSum=-1.006;QD=13.58;ReadPosRankSum=-3.848 GT:AD:DP:GQ:PL 0/0:29,0:29:66.21:0,66,870 0/0:53,0:53:99:0,141,1771 0/0:39,0:39:99:0,108,1359 0/0:104,0:104:99:0,259,3534 0/0:66,0:66:99:0,169,2281 0/0:67,1:68:99:0,135,2263 0/0:71,0:71:99:0,175,2339 0/0:61,1:62:99:0,126,2099 0/0:43,0:43:99:0,129,1611 0/0:36,0:36:99:0,99,1263 0/0:36,0:36:99:0,102,1258 0/0:44,0:44:99:0,105,1351 0/0:44,0:44:99:0,120,1482 0/0:44,0:44:99:0,117,1450 0/0:191,0:191:99:0,439,5718 0/0:54,0:54:99:0,135,1699 0/0:49,0:49:99:0,123,1569 0/0:47,0:47:99:0,129,1600 0/0:89,0:89:99:0,241,2920 0/0:74,0:74:99:0,199,2463 0/0:74,0:75:99:0,175,2205 0/0:54,0:54:99:0,138,1782 0/0:103,0:103:99:0,256,3476 0/0:64,0:64:99:0,147,2009 0/0:59,0:59:99:0,153,2017 0/0:67,0:67:99:0,169,2255 0/0:37,0:37:93.27:0,93,1195 0/0:47,0:47:99:0,123,1510 0/0:42,0:42:99:0,114,1408 0/0:38,0:39:93.29:0,93,1195 0/0:45,0:45:99:0,117,1459 0/0:73,0:73:99:0,175,2274 0/0:47,0:47:99:0,126,1641 0/0:45,0:45:99:0,117,1469 0/0:44,0:44:99:0,120,1523 0/0:49,0:49:99:0,120,1566 0/0:69,0:69:99:0,178,2216 0/0:53,0:53:99:0,123,1554 0/0:47,0:47:99:0,120,1529 0/1:22,30:52:99:820,0,674 0/1:23,18:41:99:506,0,618 0/0:53,0:53:99:0,147,1845 11 116658584 . C G 61.37 . AC=1;AF=0.013;AN=80;BaseQRankSum=-0.444;DP=216;Dels=0.00;FS=2.326;HRun=1;HaplotypeScore=0.2499;InbreedingCoeff=-0.0612;MQ=57.48;MQ0=0;MQRankSum=-0.361;QD=10.23;ReadPosRankSum=0.926 GT:AD:DP:GQ:PL 0/0:10,0:10:24.07:0,24,297 0/0:4,0:4:6.02:0,6,90 0/0:6,0:6:15.05:0,15,198 0/0:7,0:7:18.06:0,18,248 0/0:2,0:2:6.02:0,6,81 0/0:1,0:1:3.01:0,3,43 0/0:4,0:4:9.03:0,9,127 0/0:3,0:3:9.03:0,9,122 0/0:9,0:9:21.04:0,21,249 0/0:5,0:5:15.05:0,15,192 0/0:3,0:3:9.03:0,9,115 ./. 0/0:5,0:5:12.04:0,12,160 0/0:4,0:4:12.04:0,12,158 0/0:12,0:12:27.07:0,27,331 0/0:9,0:9:24.08:0,24,311 0/1:2,4:6:62.06:107,0,62 0/0:6,0:6:15.05:0,15,196 0/0:7,0:7:18.06:0,18,232 0/0:6,0:6:15.05:0,15,201 0/0:12,0:12:30.10:0,30,401 0/0:7,0:7:18.06:0,18,234 0/0:2,0:2:6.02:0,6,71 0/0:2,0:2:6.02:0,6,80 0/0:3,0:3:6.02:0,6,85 0/0:2,0:2:6.02:0,6,80 0/0:7,0:7:15.05:0,15,206 0/0:4,0:4:12.04:0,12,144 0/0:3,0:3:6.02:0,6,77 0/0:2,0:2:6.02:0,6,79 0/0:8,0:8:21.07:0,21,274 0/0:6,0:6:12.04:0,12,160 0/0:6,0:6:15.04:0,15,189 0/0:8,0:8:21.07:0,21,273 0/0:2,0:2:3.01:0,3,45 0/0:6,0:6:15.05:0,15,194 0/0:8,0:8:18.03:0,18,214 0/0:7,0:7:18.05:0,18,222 ./. 0/0:4,0:4:9.03:0,9,124 0/0:7,0:7:18.05:0,18,223 0/0:1,0:1:3.01:0,3,37 11 117052532 . C A 1765.54 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.560;DP=3190;Dels=0.00;FS=2.096;HRun=2;HaplotypeScore=1.9661;InbreedingCoeff=-0.0244;MQ=59.15;MQ0=0;MQRankSum=-0.779;QD=12.52;ReadPosRankSum=-1.126 GT:AD:DP:GQ:PL 0/0:68,0:68:99:0,193,2401 0/0:70,0:70:99:0,190,2376 0/0:36,0:36:96.30:0,96,1217 0/0:106,0:106:99:0,274,3708 0/0:75,1:77:99:0,174,2692 0/0:84,0:84:99:0,220,2971 0/0:73,0:73:99:0,208,2758 0/0:85,1:86:99:0,184,2896 0/1:35,34:69:99:959,0,1040 0/1:41,31:72:99:869,0,1224 0/0:67,0:67:99:0,178,2275 0/0:51,0:51:99:0,144,1782 0/0:48,0:48:99:0,138,1715 0/0:80,0:80:99:0,214,2701 0/0:206,0:207:99:0,545,6906 0/0:80,0:80:99:0,220,2759 0/0:88,0:88:99:0,229,2904 0/0:67,0:67:99:0,172,2210 0/0:76,0:76:99:0,211,2634 0/0:103,0:103:99:0,277,3472 0/0:82,0:82:99:0,223,2829 0/0:75,0:75:99:0,202,2550 0/0:94,0:94:99:0,238,3265 0/0:65,0:65:99:0,157,2134 0/0:90,0:90:99:0,211,2851 0/0:60,0:60:99:0,147,2014 0/0:49,0:49:99:0,138,1751 0/0:63,0:63:99:0,172,2143 0/0:56,0:56:99:0,153,1939 0/0:87,0:87:99:0,235,2971 0/0:59,0:59:99:0,178,2195 0/0:95,0:95:99:0,253,3216 0/0:73,0:73:99:0,202,2549 0/0:56,0:56:99:0,150,1889 0/0:78,0:78:99:0,205,2591 0/0:78,0:78:99:0,208,2640 0/0:103,0:103:99:0,280,3535 0/0:63,0:63:99:0,175,2193 0/0:63,0:63:99:0,178,2236 0/0:64,0:64:99:0,178,2219 0/0:62,0:62:99:0,168,2078 0/0:67,0:67:99:0,184,2290 11 117075048 . C T 1683.85 . AC=1;AF=0.012;AN=84;BaseQRankSum=7.987;DP=2635;Dels=0.00;FS=6.771;HRun=0;HaplotypeScore=2.2591;InbreedingCoeff=-0.0120;MQ=59.13;MQ0=0;MQRankSum=-0.201;QD=13.92;ReadPosRankSum=2.053 GT:AD:DP:GQ:PL 0/0:55,0:56:99:0,138,1546 0/0:34,0:35:96.24:0,96,1058 0/0:42,0:42:99:0,117,1262 0/0:117,0:118:99:0,301,3634 0/0:96,0:99:99:0,238,2810 0/0:94,0:95:99:0,244,2869 0/0:62,0:63:99:0,162,1923 0/0:92,0:92:99:0,247,2929 0/0:39,0:39:99:0,111,1193 0/0:54,0:55:99:0,129,1424 0/0:32,0:32:90.23:0,90,978 0/0:46,0:46:99:0,126,1398 0/0:38,0:38:99:0,108,1181 0/0:37,0:37:99:0,102,1150 0/0:153,0:153:99:0,409,4424 0/0:48,0:49:99:0,114,1255 0/0:45,0:45:99:0,120,1303 0/0:38,0:38:93.23:0,93,1066 0/0:78,0:79:99:0,195,2123 0/0:93,0:93:99:0,250,2754 0/0:84,0:84:99:0,214,2355 0/0:77,1:79:99:0,175,2206 0/1:57,63:121:99:1730,0,1448 0/0:58,0:59:99:0,147,1739 0/0:80,0:80:99:0,184,2270 0/0:69,0:69:99:0,177,2077 0/0:38,0:39:99:0,102,1132 0/0:46,0:47:99:0,129,1408 0/0:38,0:38:99:0,111,1189 0/0:42,0:43:99:0,114,1242 0/0:41,0:41:99:0,117,1253 0/0:110,0:112:99:0,298,3270 0/0:54,0:56:99:0,147,1599 0/0:40,0:40:99:0,105,1129 0/0:60,0:61:99:0,165,1786 0/0:48,0:48:99:0,123,1323 0/0:90,1:94:99:0,238,2581 0/0:51,0:51:99:0,138,1498 0/0:41,0:41:99:0,111,1180 0/0:53,0:53:99:0,138,1529 0/0:31,0:32:84.19:0,84,905 0/0:42,1:43:82.02:0,82,1182 11 117186506 . G A 17.85 . AC=1;AF=0.019;AN=54;BaseQRankSum=-0.716;DP=57;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0682;InbreedingCoeff=-0.1562;MQ=58.27;MQ0=0;MQRankSum=-0.542;QD=4.46;ReadPosRankSum=0.195 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,183 ./. 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,41 ./. 0/0:1,0:1:3.01:0,3,39 ./. ./. 0/0:1,0:1:3.01:0,3,34 0/0:1,0:1:3.01:0,3,40 ./. ./. 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,35 0/0:4,0:4:9.02:0,9,104 0/0:1,0:1:3.01:0,3,32 ./. 0/0:3,0:3:6.02:0,6,83 0/0:3,0:3:9.03:0,9,110 0/0:3,0:3:9.03:0,9,115 0/0:3,0:3:6.02:0,6,76 ./. ./. ./. ./. ./. 0/0:3,0:3:6.02:0,6,82 0/0:1,0:1:3.01:0,3,38 0/0:2,0:2:3.01:0,3,45 ./. ./. 0/0:2,0:2:6.02:0,6,77 0/1:2,2:4:35.74:60,0,36 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.03:0,9,108 ./. 0/0:3,0:3:6.02:0,6,77 0/0:2,0:2:6.01:0,6,63 0/0:3,0:3:9.03:0,9,108 0/0:1,0:1:3.01:0,3,31 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.01:0,6,63 11 117222592 . G A 17187.05 . AC=14;AF=0.167;AN=84;BaseQRankSum=-27.430;DP=3218;DS;Dels=0.00;FS=4.472;HRun=1;HaplotypeScore=1.5451;InbreedingCoeff=-0.0286;MQ=59.44;MQ0=1;MQRankSum=2.702;QD=17.92;ReadPosRankSum=-0.864 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,135,1698 0/0:53,0:53:99:0,156,1960 0/0:45,0:45:99:0,126,1588 0/0:129,1:131:99:0,318,4655 0/0:142,0:142:99:0,391,5256 0/0:115,0:115:99:0,310,4139 0/0:96,0:96:99:0,259,3493 0/0:110,0:110:99:0,307,4066 0/0:71,0:71:99:0,193,2453 0/1:30,23:53:99:547,0,924 0/0:59,0:59:99:0,166,2112 0/0:58,0:58:99:0,153,1957 0/0:54,0:54:99:0,144,1797 0/0:55,0:55:99:0,160,2009 1/1:0,193:194:99:6065,499,0 0/1:22,29:51:99:843,0,618 0/1:35,31:66:99:833,0,1077 0/0:72,0:72:99:0,190,2395 0/0:91,0:92:99:0,232,2928 0/0:96,0:96:99:0,247,3171 0/0:101,0:103:99:0,271,3410 0/0:61,1:62:99:0,135,2090 0/1:64,73:137:99:2062,0,1925 0/0:93,0:93:99:0,256,3421 0/0:89,1:90:99:0,223,3318 0/0:85,2:87:99:0,181,2925 0/0:49,0:49:99:0,132,1690 0/1:23,30:53:99:837,0,647 0/0:59,0:59:99:0,160,2030 0/1:17,36:53:99:1032,0,462 0/1:32,25:57:99:709,0,989 0/0:98,0:98:99:0,253,3226 0/1:28,33:61:99:877,0,863 0/0:55,0:56:99:0,153,1909 0/0:62,0:62:99:0,175,2207 0/1:34,31:65:99:827,0,983 0/0:83,0:84:99:0,223,2826 0/1:24,43:67:99:1207,0,592 0/1:22,25:47:99:714,0,667 0/0:67,0:67:99:0,184,2311 0/1:30,25:55:99:633,0,966 0/0:52,0:52:99:0,150,1873 11 117222691 . C A 505.05 . AC=4;AF=0.048;AN=84;BaseQRankSum=-5.989;DP=513;Dels=0.00;FS=1.415;HRun=0;HaplotypeScore=0.1966;InbreedingCoeff=-0.0513;MQ=59.32;MQ0=0;MQRankSum=-0.640;QD=10.31;ReadPosRankSum=0.291 GT:AD:DP:GQ:PL 0/0:7,0:7:21.07:0,21,263 0/0:11,0:11:30.10:0,30,395 0/0:6,0:6:18.06:0,18,235 0/0:22,0:22:66.21:0,66,862 0/0:20,0:20:60.18:0,60,801 0/0:10,0:10:30.10:0,30,399 0/0:11,0:11:33.11:0,33,432 0/0:13,0:13:39.13:0,39,538 0/0:14,0:14:42.13:0,42,543 0/0:11,0:11:27.09:0,27,350 0/0:9,0:9:27.09:0,27,344 0/0:11,0:11:33.10:0,33,416 0/0:7,0:7:21.06:0,21,250 0/0:11,0:11:33.11:0,33,429 0/0:43,0:43:99:0,120,1499 0/0:9,0:9:27.09:0,27,344 0/0:10,0:10:27.05:0,27,325 0/0:9,0:9:27.08:0,27,331 0/0:16,0:16:45.13:0,45,534 0/0:15,0:15:45.14:0,45,574 0/1:13,3:16:42.25:42,0,443 0/1:4,10:14:99:263,0,114 0/0:15,0:15:45.13:0,45,592 0/0:9,0:9:24.07:0,24,312 0/0:12,0:12:33.11:0,33,448 0/0:7,0:7:21.07:0,21,275 0/0:6,0:6:18.06:0,18,227 0/0:11,0:11:33.10:0,33,409 0/0:12,0:12:33.11:0,33,430 0/0:11,0:11:27.09:0,27,355 0/0:12,0:12:33.10:0,33,399 0/0:14,0:14:39.13:0,39,500 0/0:13,0:13:36.12:0,36,472 0/1:6,6:12:99:166,0,190 0/1:3,4:7:97.47:120,0,97 0/0:11,0:11:33.09:0,33,402 0/0:15,0:15:42.12:0,42,506 0/0:6,0:6:18.06:0,18,235 0/0:12,0:12:33.10:0,33,420 0/0:12,0:12:36.09:0,36,430 0/0:7,0:7:21.07:0,21,261 0/0:14,0:14:39.11:0,39,479 11 117234205 . G A 1126.83 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.306;DP=2341;Dels=0.00;FS=11.339;HRun=0;HaplotypeScore=1.4283;InbreedingCoeff=-0.0120;MQ=59.31;MQ0=0;MQRankSum=0.356;QD=14.63;ReadPosRankSum=1.546 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,108,1413 0/0:43,0:43:99:0,99,1307 0/0:32,0:32:87.26:0,87,1107 0/0:103,0:103:99:0,259,3386 0/0:103,0:103:99:0,256,3512 0/0:86,0:86:99:0,208,2817 0/0:51,0:51:99:0,129,1741 0/0:64,0:64:99:0,168,2230 0/0:43,0:44:99:0,114,1469 0/0:57,0:58:99:0,138,1767 0/0:33,0:33:78.24:0,78,973 0/0:41,0:42:99:0,108,1387 0/0:48,0:48:99:0,117,1529 0/0:40,0:40:99:0,105,1311 0/0:167,0:170:99:0,418,5277 0/0:34,0:34:90.26:0,90,1109 0/0:30,0:30:90.27:0,90,1125 0/0:39,0:39:99:0,105,1327 0/0:70,0:70:99:0,180,2149 0/0:72,0:72:99:0,187,2402 0/0:83,0:84:99:0,220,2705 0/0:57,0:57:99:0,144,1830 0/1:37,40:77:99:1173,0,1014 0/0:86,0:87:99:0,199,2662 0/0:79,0:79:99:0,208,2782 0/0:69,0:69:99:0,184,2466 0/0:27,0:27:66.21:0,66,861 0/0:36,0:36:99:0,99,1233 0/0:16,0:16:39.13:0,39,515 0/0:42,0:43:99:0,108,1376 0/0:34,0:34:99:0,99,1201 0/0:66,0:66:99:0,169,2185 0/0:42,0:42:99:0,108,1381 0/0:43,0:43:99:0,120,1481 0/0:53,0:53:99:0,132,1719 0/0:46,0:46:99:0,114,1466 0/0:66,0:66:99:0,138,1721 0/0:54,0:54:99:0,126,1622 0/0:28,0:28:75.21:0,75,930 0/0:38,0:38:99:0,99,1216 0/0:42,0:42:99:0,111,1404 0/0:48,0:48:99:0,132,1667 11 117266312 . C G 11293.66 . AC=27;AF=0.321;AN=84;BaseQRankSum=10.521;DP=1553;Dels=0.00;FS=33.239;HRun=0;HaplotypeScore=1.3357;InbreedingCoeff=-0.0370;MQ=59.21;MQ0=0;MQRankSum=0.392;QD=14.21;ReadPosRankSum=0.113 GT:AD:DP:GQ:PL 0/1:15,9:24:99:244,0,432 0/1:11,6:17:99:181,0,316 0/1:13,7:20:99:202,0,383 0/1:38,35:73:99:992,0,943 0/1:40,24:64:99:686,0,1074 0/1:24,10:34:99:279,0,672 0/0:62,0:62:99:0,147,1906 0/1:29,21:50:99:511,0,824 0/1:15,15:30:99:373,0,412 0/1:16,10:26:99:208,0,378 0/1:14,10:24:99:250,0,373 1/1:0,19:19:51.16:646,51,0 1/1:0,21:21:57.17:690,57,0 1/1:1,27:28:38.24:845,38,0 0/0:115,0:116:99:0,277,3302 0/0:24,0:24:66.16:0,66,749 0/0:19,0:19:54.14:0,54,644 0/0:30,0:30:81.22:0,81,974 0/0:55,0:55:99:0,135,1540 0/0:59,0:59:99:0,156,1860 0/1:23,26:50:99:748,0,629 0/1:17,8:25:99:149,0,449 0/1:57,36:93:99:973,0,1580 0/1:18,11:29:99:349,0,520 1/1:0,39:39:96.30:1276,96,0 0/1:35,20:55:99:528,0,867 0/0:20,0:20:54.17:0,54,657 0/0:30,0:30:81.22:0,81,953 0/0:34,0:35:84.22:0,84,999 0/0:28,0:28:75.22:0,75,910 0/0:18,0:18:48.15:0,48,593 0/0:53,0:53:99:0,132,1651 0/0:33,0:34:87.27:0,87,1072 0/1:4,9:13:74.43:293,0,74 0/1:6,6:12:99:179,0,177 0/0:30,1:31:84.23:0,84,1007 0/0:59,0:59:99:0,132,1600 0/0:31,0:32:87.25:0,87,1026 0/0:26,0:26:72.21:0,72,871 0/1:11,11:22:99:292,0,324 0/1:13,14:27:99:399,0,354 0/0:26,0:27:69.21:0,69,843 11 117281566 . C T 1017.16 . AC=6;AF=0.071;AN=84;BaseQRankSum=-8.684;DP=896;Dels=0.00;FS=1.220;HRun=0;HaplotypeScore=0.5424;InbreedingCoeff=-0.0774;MQ=59.12;MQ0=0;MQRankSum=0.275;QD=10.71;ReadPosRankSum=-0.827 GT:AD:DP:GQ:PL 0/0:15,0:15:39.12:0,39,499 0/0:13,0:13:39.12:0,39,481 0/0:9,0:9:27.08:0,27,336 0/0:67,0:67:99:0,169,2232 0/0:38,0:38:99:0,99,1346 0/0:24,0:24:60.19:0,60,806 0/0:18,0:18:48.15:0,48,625 0/0:32,0:32:75.25:0,75,1031 0/0:11,0:11:33.10:0,33,410 0/0:9,0:9:27.09:0,27,337 0/0:15,1:16:20.44:0,20,508 0/0:24,0:24:66.21:0,66,829 0/0:14,0:14:33.10:0,33,413 0/0:13,0:13:36.11:0,36,449 0/0:70,0:70:99:0,166,2154 0/0:11,0:11:33.10:0,33,404 0/0:12,0:12:36.11:0,36,449 0/0:7,0:7:21.06:0,21,250 0/0:31,0:31:84.25:0,84,1037 0/0:30,0:30:87.26:0,87,1085 0/0:33,0:33:84.25:0,84,1029 0/0:19,0:19:54.16:0,54,677 0/0:49,0:49:99:0,126,1702 0/0:21,0:21:57.17:0,57,768 0/0:27,0:27:69.23:0,69,967 0/0:18,0:18:45.14:0,45,599 0/1:7,6:13:99:139,0,222 0/1:5,7:12:99:179,0,157 0/0:7,0:7:21.06:0,21,251 0/1:9,3:12:58.28:58,0,281 0/1:13,10:23:99:261,0,395 0/0:35,0:35:93.30:0,93,1204 0/0:16,0:16:42.13:0,42,532 0/1:6,6:12:99:153,0,193 0/0:15,0:15:45.13:0,45,547 0/1:11,12:23:99:332,0,284 0/0:20,0:20:54.16:0,54,666 0/0:15,0:15:42.12:0,42,510 0/0:16,0:16:48.14:0,48,583 0/0:19,1:20:51.16:0,51,650 0/0:10,0:10:27.08:0,27,339 0/0:16,0:16:45.14:0,45,551 11 117308795 . G A 10092.13 . AC=18;AF=0.214;AN=84;BaseQRankSum=-0.692;DP=1532;Dels=0.00;FS=0.708;HRun=2;HaplotypeScore=0.8039;InbreedingCoeff=-0.2727;MQ=59.15;MQ0=0;MQRankSum=0.666;QD=14.04;ReadPosRankSum=0.153 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,105,1273 0/0:24,0:24:66.17:0,66,787 0/0:20,0:20:57.16:0,57,680 0/0:44,0:44:99:0,111,1457 0/1:23,21:44:99:621,0,719 0/1:19,21:40:99:615,0,502 0/0:34,0:34:90.26:0,90,1171 0/1:13,14:27:99:440,0,371 0/1:18,15:33:99:386,0,466 0/1:11,15:26:99:448,0,285 0/1:16,16:32:99:458,0,465 0/0:33,0:33:84.22:0,84,1029 0/0:31,0:31:72.22:0,72,925 0/0:40,0:40:99:0,114,1369 0/1:50,66:118:99:1818,0,1220 0/1:18,15:33:99:402,0,522 0/0:30,1:31:53.81:0,54,951 0/1:18,17:35:99:439,0,455 0/0:48,0:48:99:0,123,1466 0/0:47,0:47:99:0,126,1511 0/1:28,20:48:99:546,0,733 0/1:18,22:40:99:636,0,437 0/1:33,14:47:99:342,0,963 0/1:14,16:31:99:475,0,390 0/0:23,0:23:66.21:0,66,859 0/1:17,17:34:99:405,0,540 0/0:19,0:19:51.13:0,51,607 0/0:31,0:31:78.23:0,78,953 0/0:31,0:31:81.23:0,81,976 0/0:38,1:39:74.26:0,74,1162 0/0:41,0:41:99:0,108,1269 0/1:11,28:39:99:862,0,204 0/0:35,1:36:59.28:0,59,1063 0/0:24,1:25:34.40:0,34,761 0/0:30,1:31:52:0,52,964 0/1:11,15:27:99:391,0,331 0/0:39,1:42:65.28:0,65,1143 0/1:19,13:32:99:328,0,465 0/0:34,0:34:99:0,99,1186 0/0:43,0:43:99:0,114,1359 0/0:29,0:29:81.23:0,81,958 0/1:15,17:32:99:480,0,405 11 117321269 . T TG 131.74 . AC=6;AF=0.071;AN=84;BaseQRankSum=-1.374;DP=2361;FS=664.549;HRun=2;HaplotypeScore=143.6463;InbreedingCoeff=-0.1051;MQ=57.97;MQ0=0;MQRankSum=-0.596;QD=0.57;ReadPosRankSum=-12.676 GT:AD:DP:GQ:PL 0/1:35,0:35:79.54:80,0,509 0/0:47,0:47:33.94:0,34,896 0/0:38,0:38:18.26:0,18,609 0/0:113,0:113:99:0,168,1950 0/0:108,0:108:86.72:0,87,1814 0/0:82,0:82:28.37:0,28,1137 0/0:72,0:71:77.38:0,77,1153 0/0:91,0:91:67.65:0,68,1443 0/0:44,7:51:46.27:0,46,912 0/0:35,0:35:47.25:0,47,723 0/0:38,0:38:27.88:0,28,569 0/1:27,0:27:14.74:15,0,411 0/0:35,0:35:14.32:0,14,467 0/0:40,0:40:31.88:0,32,573 0/0:151,0:151:28.54:0,29,2336 0/0:27,0:26:27.05:0,27,416 0/1:49,0:49:55.37:55,0,661 0/0:33,0:33:1.49:4,0,551 0/0:74,0:74:27.64:0,28,1383 0/0:86,0:86:99:0,124,1444 0/0:91,0:91:56.40:0,56,1466 0/0:50,1:51:55.87:0,56,1057 0/0:108,0:108:99:0,145,2047 0/0:52,1:53:51.12:0,51,708 0/0:91,0:91:99:0,108,1655 0/0:67,0:66:33.14:0,33,1138 0/1:25,0:25:37.78:38,0,246 0/0:31,0:31:15.45:0,15,507 0/0:30,0:30:47.05:0,47,603 0/0:32,0:32:0.22:0,0,458 0/0:36,0:36:51.53:0,52,616 0/0:65,0:65:38.92:0,39,1181 0/0:59,0:59:58.03:0,58,1104 0/0:49,0:49:20.12:0,20,909 0/0:32,0:32:12.02:0,12,696 0/0:47,0:47:66.24:0,66,926 0/1:61,0:61:35.20:35,0,821 0/0:37,0:37:48.53:0,49,613 0/0:43,0:43:1.71:3,0,479 0/1:35,0:35:19.33:19,0,430 0/0:31,4:35:25.48:0,25,708 0/0:51,0:51:48.28:0,48,949 11 117321272 . C G 158.26 . AC=9;AF=0.107;AN=84;BaseQRankSum=-14.076;DP=2107;Dels=0.00;FS=499.288;HRun=2;HaplotypeScore=2.0398;InbreedingCoeff=-0.1461;MQ=58.53;MQ0=0;MQRankSum=-0.587;QD=0.39;ReadPosRankSum=-12.186 GT:AD:DP:GQ:PL 0/1:23,12:35:51.91:52,0,535 0/0:28,12:40:77.05:0,77,935 0/0:27,9:36:32.55:0,33,677 0/0:65,39:105:99:0,159,2025 0/0:69,30:99:91.75:0,92,2102 0/0:39,29:68:6.97:0,7,1105 0/0:47,18:65:90.15:0,90,1153 0/0:56,25:83:75.48:0,75,1619 0/0:40,1:42:84.24:0,84,1019 0/0:24,7:31:48.11:0,48,567 0/0:28,8:36:27.48:0,27,582 0/1:17,9:26:21.85:22,0,403 0/0:19,10:29:15.63:0,16,505 0/0:21,14:35:51.11:0,51,581 0/1:84,43:127:23.49:23,0,2293 0/0:15,10:25:30.07:0,30,354 0/1:24,19:43:42.20:42,0,706 0/1:21,11:32:13.31:13,0,580 0/0:44,22:67:6.23:0,6,1251 0/0:52,24:76:99:0,120,1462 0/0:52,18:71:80.96:0,81,1510 0/0:36,12:48:34.87:0,35,892 0/0:66,30:96:99:0,161,2099 0/0:32,16:48:66.18:0,66,837 0/0:55,24:81:99:0,102,1660 0/0:42,20:63:22.96:0,23,1107 0/1:14,12:26:26.27:26,0,297 0/0:18,10:28:12.87:0,13,500 0/0:19,6:25:23.46:0,23,533 0/0:15,10:25:18.67:0,19,420 0/0:21,11:33:59.55:0,60,704 0/0:38,24:62:4.41:0,4,1048 0/0:39,16:55:1.96:0,2,1024 0/0:35,14:49:67.07:0,67,1157 0/0:22,8:30:1.85:3,0,618 0/0:28,11:39:78.18:0,78,898 0/1:29,21:50:39.67:40,0,784 0/0:22,10:32:32.46:0,32,579 0/1:24,16:40:41.19:41,0,565 0/1:21,10:31:21.93:22,0,478 0/0:27,4:31:60.19:0,60,768 0/0:29,15:44:48.57:0,49,885 11 117774394 . A G 3188.05 . AC=7;AF=0.083;AN=84;BaseQRankSum=13.481;DP=1417;Dels=0.00;FS=12.981;HRun=3;HaplotypeScore=0.7278;InbreedingCoeff=-0.0909;MQ=58.88;MQ0=0;MQRankSum=5.471;QD=14.30;ReadPosRankSum=-0.714 GT:AD:DP:GQ:PL 0/0:29,0:29:78.22:0,78,951 0/0:37,0:37:99:0,105,1278 0/0:27,0:27:69.22:0,69,872 0/0:45,0:45:99:0,111,1357 0/1:13,16:29:99:442,0,374 0/1:17,26:43:99:746,0,470 0/0:33,0:33:84.25:0,84,1067 0/1:17,11:28:99:258,0,457 0/0:29,0:29:75.23:0,75,928 0/1:15,8:23:99:212,0,422 0/0:26,0:26:75.21:0,75,885 0/0:34,0:34:90.28:0,90,1120 0/0:30,0:30:72.23:0,72,906 0/0:24,0:24:63.19:0,63,767 0/0:81,0:81:99:0,214,2585 0/0:20,0:20:51.15:0,51,625 0/0:34,0:34:96.28:0,96,1156 0/0:24,0:24:69.21:0,69,838 0/0:50,0:50:99:0,141,1701 0/0:64,0:64:99:0,159,2003 0/0:38,0:38:99:0,105,1311 0/0:34,0:34:93.28:0,93,1136 0/0:44,0:44:99:0,117,1459 0/1:11,19:30:99:590,0,293 0/0:23,1:24:63.20:0,63,795 0/1:17,26:43:99:780,0,428 0/0:19,0:19:48.13:0,48,585 0/0:33,0:33:90.28:0,90,1110 0/0:26,0:26:75.22:0,75,893 0/0:32,0:32:93.29:0,93,1140 0/0:24,0:24:69.21:0,69,847 0/0:63,0:63:99:0,150,1911 0/0:35,0:35:93.27:0,93,1133 0/0:30,0:30:84.26:0,84,1026 0/0:23,0:24:66.20:0,66,788 0/0:23,0:23:63.19:0,63,767 0/0:40,1:41:99:0,99,1259 0/0:33,0:33:84.26:0,84,1046 0/1:17,10:27:99:273,0,525 0/0:27,0:27:75.23:0,75,934 0/0:35,0:35:93.28:0,93,1141 0/0:22,0:22:60.19:0,60,739 11 117781435 . A G 35137.80 . AC=80;AF=0.952;AN=84;BaseQRankSum=0.248;DP=1103;Dels=0.00;FS=14.352;HRun=1;HaplotypeScore=0.6303;InbreedingCoeff=-0.0500;MQ=59.22;MQ0=0;MQRankSum=1.990;QD=31.86;ReadPosRankSum=-2.291 GT:AD:DP:GQ:PL 1/1:0,24:24:69.22:879,69,0 1/1:0,31:31:84.26:1059,84,0 1/1:0,31:31:75.24:996,75,0 1/1:0,28:28:69.22:919,69,0 1/1:0,19:19:42.14:591,42,0 0/1:11,11:22:99:283,0,294 1/1:0,11:11:30.10:405,30,0 0/1:7,7:14:99:201,0,197 1/1:0,29:29:66.21:874,66,0 1/1:0,29:29:75.24:970,75,0 1/1:0,29:29:69.20:879,69,0 1/1:0,17:17:48.15:611,48,0 1/1:0,30:30:72.23:928,72,0 1/1:0,23:23:66.21:846,66,0 1/1:0,91:91:99:2805,220,0 1/1:0,21:21:57.18:733,57,0 1/1:0,29:29:81.26:1047,81,0 1/1:0,36:36:81.25:1047,81,0 1/1:0,19:19:45.14:573,45,0 1/1:0,44:44:99:1294,99,0 1/1:0,35:35:84.25:1063,84,0 1/1:0,22:22:54.18:719,54,0 1/1:0,23:23:60.19:813,60,0 0/1:4,8:12:99:181,0,123 1/1:0,17:17:39.13:537,39,0 0/1:8,4:12:99:129,0,237 1/1:0,18:18:51.16:638,51,0 1/1:0,23:23:63.20:797,63,0 1/1:0,31:31:78.24:1007,78,0 1/1:0,18:18:51.16:643,51,0 1/1:0,28:28:75.22:958,75,0 1/1:0,30:30:84.26:1063,84,0 1/1:0,12:12:36.11:454,36,0 1/1:0,21:21:54.16:683,54,0 1/1:0,22:22:66.20:815,66,0 1/1:0,28:28:78.25:997,78,0 1/1:0,31:32:87.27:1085,87,0 1/1:0,27:27:66.21:863,66,0 1/1:0,24:24:66.21:843,66,0 1/1:0,36:36:84.26:1083,84,0 1/1:0,26:26:69.22:887,69,0 1/1:0,29:29:75.22:939,75,0 11 117965530 . A G 10500.46 . AC=30;AF=0.357;AN=84;BaseQRankSum=8.253;DP=923;Dels=0.00;FS=4.874;HRun=0;HaplotypeScore=0.4571;InbreedingCoeff=-0.0325;MQ=59.03;MQ0=0;MQRankSum=1.478;QD=19.13;ReadPosRankSum=0.624 GT:AD:DP:GQ:PL 0/0:26,0:26:72.22:0,72,873 0/0:22,0:22:66.20:0,66,790 0/0:16,0:16:42.13:0,42,524 0/0:26,0:26:66.20:0,66,829 0/1:12,10:22:99:295,0,392 0/0:17,0:17:45.13:0,45,564 0/1:6,6:12:99:209,0,168 0/0:19,0:19:48.14:0,48,612 0/0:22,0:22:63.19:0,63,758 0/0:22,0:22:63.19:0,63,759 0/1:14,6:20:99:169,0,431 1/1:0,21:21:63.19:780,63,0 0/1:7,10:17:99:258,0,185 1/1:0,17:17:39.13:517,39,0 0/1:27,41:68:99:1176,0,730 0/1:5,9:14:99:297,0,133 0/0:21,0:21:60.16:0,60,714 0/1:13,7:20:99:202,0,410 0/1:16,8:24:99:221,0,489 0/0:32,0:32:87.27:0,87,1084 1/1:0,24:24:66.20:823,66,0 0/1:12,8:20:99:224,0,354 0/0:24,0:24:66.20:0,66,830 0/1:8,5:13:99:156,0,241 0/1:11,15:26:99:462,0,278 0/1:6,9:15:99:321,0,140 0/0:19,0:19:51.16:0,51,627 0/0:21,0:21:57.17:0,57,700 0/1:4,12:16:96.36:375,0,96 0/1:18,10:28:99:276,0,523 1/1:0,23:23:60.18:756,60,0 1/1:0,22:23:63.20:796,63,0 0/0:21,0:21:54.16:0,54,660 0/0:16,0:17:45.14:0,45,566 0/1:9,1:10:8.48:8,0,301 0/1:5,12:17:99:400,0,137 0/1:21,18:39:99:543,0,570 0/1:5,12:17:99:383,0,105 0/1:8,11:19:99:318,0,242 0/0:25,0:25:69.22:0,69,870 0/0:24,0:24:63.20:0,63,791 0/1:8,16:24:99:534,0,201 11 117978578 . G A 354 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.726;DP=1689;Dels=0.00;FS=2.673;HRun=0;HaplotypeScore=0.7930;InbreedingCoeff=-0.0120;MQ=59.37;MQ0=0;MQRankSum=0.779;QD=11.06;ReadPosRankSum=1.814 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,132,1606 0/0:35,0:35:99:0,99,1208 0/0:24,0:24:63.19:0,63,782 0/0:51,0:51:99:0,141,1856 0/0:50,0:50:99:0,123,1645 0/0:46,0:46:99:0,126,1628 0/0:50,0:50:99:0,135,1791 0/1:19,13:32:99:400,0,594 0/0:43,0:43:99:0,120,1455 0/0:30,0:31:84.25:0,84,1029 0/0:24,0:24:69.21:0,69,838 0/0:43,0:43:99:0,120,1464 0/0:26,0:26:72.22:0,72,886 0/0:47,1:48:99:0,129,1570 0/0:107,1:109:99:0,286,3587 0/0:45,0:45:99:0,123,1493 0/0:56,0:56:99:0,159,1954 0/0:33,0:33:93.29:0,93,1164 0/0:46,0:47:99:0,126,1539 0/0:46,0:46:99:0,123,1532 0/0:42,0:42:99:0,114,1404 0/0:25,0:25:66.20:0,66,821 0/0:61,0:61:99:0,163,2136 0/0:38,0:38:99:0,105,1323 0/0:33,0:33:96.31:0,96,1284 0/0:40,0:40:99:0,99,1350 0/0:28,0:28:78.20:0,78,933 0/0:25,0:25:69.19:0,69,805 0/0:38,0:38:99:0,102,1266 0/0:44,0:44:99:0,117,1435 0/0:34,1:35:64.51:0,65,1162 0/0:45,0:45:99:0,114,1397 0/0:24,0:24:66.19:0,66,809 0/0:29,0:29:81.21:0,81,960 0/0:41,0:41:99:0,114,1371 0/0:31,0:31:90.26:0,90,1078 0/0:38,0:39:99:0,111,1332 0/0:43,0:43:99:0,117,1442 0/0:39,0:39:99:0,99,1248 0/0:29,0:29:75.24:0,75,948 0/0:40,0:40:99:0,114,1410 0/0:33,0:33:93.26:0,93,1125 11 118068752 . T C 20755.11 . AC=14;AF=0.167;AN=84;BaseQRankSum=13.559;DP=5117;DS;Dels=0.00;FS=23.149;HRun=0;HaplotypeScore=10.8324;InbreedingCoeff=-0.0286;MQ=59.37;MQ0=0;MQRankSum=5.281;QD=13.43;ReadPosRankSum=0.560 GT:AD:DP:GQ:PL 0/0:84,1:85:99:0,205,2692 0/0:113,1:114:99:0,274,3647 0/0:97,0:97:99:0,268,3211 0/0:212,0:212:99:0,545,6554 0/1:85,77:162:99:2084,0,2342 0/0:181,0:182:99:0,466,5824 0/0:166,0:166:99:0,427,5267 0/0:168,0:168:99:0,442,5410 0/1:49,36:85:99:1035,0,1356 0/0:84,0:84:99:0,235,2711 0/1:51,43:94:99:1094,0,1399 0/0:105,0:105:99:0,280,3294 0/1:41,30:71:99:674,0,1203 0/0:94,0:94:99:0,259,2991 0/1:121,105:226:99:2999,0,3252 0/0:85,0:85:99:0,235,2758 0/1:45,48:93:99:1257,0,1234 0/0:104,0:104:99:0,283,3326 0/0:130,0:130:99:0,340,3988 0/0:173,0:173:99:0,442,5356 0/1:77,80:157:99:2019,0,1992 1/1:1,93:94:99:2695,226,0 0/0:204,0:204:99:0,527,6341 0/0:157,0:157:99:0,412,5030 0/1:101,88:189:99:2405,0,2764 0/0:207,0:207:99:0,530,6530 0/1:45,40:87:99:1131,0,1144 0/1:48,45:93:99:1114,0,1265 0/0:72,1:73:99:0,172,2390 0/0:99,0:99:99:0,262,3129 0/0:90,0:90:99:0,253,2965 0/0:145,0:145:99:0,385,4706 0/1:49,43:92:99:1167,0,1244 0/0:101,0:101:99:0,283,3370 0/0:99,0:99:99:0,280,3274 0/1:57,45:102:99:1081,0,1556 0/0:111,0:112:99:0,295,3505 0/0:108,0:108:99:0,286,3372 0/0:100,0:100:99:0,274,3222 0/0:98,0:98:99:0,268,3157 0/0:71,1:72:99:0,155,2172 0/0:108,0:108:99:0,286,3387 11 118104210 . TAC T 993.39 . AC=1;AF=0.012;AN=84;BaseQRankSum=7.736;DP=3336;DS;FS=0.775;HRun=0;HaplotypeScore=232.9591;InbreedingCoeff=-0.0120;MQ=59.24;MQ0=0;MQRankSum=1.579;QD=16.02;ReadPosRankSum=2.926 GT:AD:DP:GQ:PL 0/0:75,0:75:99:0,208,3738 0/0:83,0:83:99:0,229,4147 0/0:51,0:51:99:0,141,2552 0/0:94,0:94:99:0,274,4942 0/0:88,0:88:99:0,262,4755 0/0:76,0:76:99:0,214,3913 0/0:67,0:67:99:0,196,3580 0/1:34,28:61:99:1049,0,1507 0/0:76,0:76:99:0,217,3975 0/0:87,0:87:99:0,250,4430 0/0:66,0:66:99:0,193,3547 0/0:76,0:76:99:0,214,3866 0/0:47,0:47:99:0,135,2393 0/0:64,0:64:99:0,187,3378 0/0:206,0:206:99:0,599,10528 0/0:80,0:80:99:0,229,4182 0/0:57,0:57:99:0,169,3047 0/0:73,0:73:99:0,199,3623 0/0:141,0:141:99:0,403,7250 0/0:136,0:136:99:0,386,7088 0/0:127,0:127:99:0,367,6687 0/0:81,0:81:99:0,232,4215 0/0:80,0:80:99:0,238,4204 0/0:62,0:60:99:0,187,3405 0/0:50,0:49:99:0,150,2733 0/0:51,0:50:99:0,153,2742 0/0:59,0:59:99:0,172,3151 0/0:78,0:77:99:0,223,4009 0/0:47,0:47:99:0,141,2613 0/0:83,0:83:99:0,250,4518 0/0:72,0:72:99:0,211,3747 0/0:130,0:130:99:0,367,6725 0/0:66,0:66:99:0,196,3602 0/0:59,0:59:99:0,166,2908 0/0:63,0:63:99:0,180,3184 0/0:71,0:71:99:0,193,3491 0/0:96,0:96:99:0,262,4720 0/0:64,0:64:99:0,187,3404 0/0:75,0:75:99:0,217,3912 0/0:68,0:68:99:0,202,3613 0/0:82,0:82:99:0,232,4175 0/0:67,0:67:99:0,190,3461 11 118133311 . T A 845.17 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.206;DP=2109;Dels=0.00;FS=0.658;HRun=0;HaplotypeScore=1.2159;InbreedingCoeff=-0.0120;MQ=59.22;MQ0=0;MQRankSum=0.119;QD=11.90;ReadPosRankSum=1.434 GT:AD:DP:GQ:PL 0/0:37,1:38:83.63:0,84,1230 0/0:35,0:35:99:0,102,1216 0/0:32,0:32:93.25:0,93,1083 0/0:72,0:72:99:0,202,2416 0/0:52,0:52:99:0,147,1817 0/0:57,0:57:99:0,160,2029 0/0:50,0:50:99:0,138,1699 0/0:48,0:48:99:0,129,1599 0/0:47,0:48:99:0,126,1537 0/0:31,0:31:78.24:0,78,961 0/0:41,0:41:99:0,111,1358 0/0:46,0:46:99:0,129,1551 0/0:32,0:32:84.25:0,84,1008 0/0:40,0:40:99:0,114,1368 0/0:140,0:140:99:0,364,4400 0/0:54,0:54:99:0,159,1913 0/0:48,0:48:99:0,138,1686 0/0:52,0:52:99:0,153,1843 0/0:73,0:75:99:0,205,2432 0/1:39,32:71:99:891,0,1045 0/0:88,1:89:99:0,214,2880 0/0:54,0:54:99:0,144,1768 0/0:65,0:65:99:0,175,2131 0/0:40,0:40:99:0,114,1387 0/0:60,0:60:99:0,159,1976 0/0:36,0:37:93.27:0,93,1148 0/0:37,0:37:96.29:0,96,1163 0/0:42,0:42:99:0,114,1372 0/0:33,0:33:96.29:0,96,1145 0/0:40,0:40:99:0,114,1359 0/0:49,0:49:99:0,135,1634 0/0:58,0:58:99:0,153,1874 0/0:53,0:53:99:0,144,1713 0/0:30,0:30:87.27:0,87,1074 0/0:45,0:45:99:0,126,1527 0/0:50,0:50:99:0,135,1660 0/0:64,0:64:99:0,159,1941 0/0:31,0:31:78.24:0,78,974 0/0:42,0:42:99:0,111,1368 0/0:36,0:36:99:0,105,1251 0/0:41,0:41:99:0,114,1383 0/0:50,1:51:99:0,112,1665 11 118244335 . T TA 41.12 . AC=1;AF=0.012;AN=84;BaseQRankSum=13.532;DP=3002;DS;FS=1038.462;HRun=1;HaplotypeScore=187.2525;InbreedingCoeff=-0.0133;MQ=59.01;MQ0=1;MQRankSum=-0.091;QD=0.37;ReadPosRankSum=-14.839 GT:AD:DP:GQ:PL 0/0:58,0:58:98.43:0,98,1682 0/0:45,0:45:39.80:0,40,1051 0/0:42,0:42:50.62:0,51,1015 0/0:93,0:93:99:0,195,2551 0/0:90,0:89:99:0,133,2258 0/0:75,0:73:99:0,112,2025 0/0:56,0:56:99:0,103,1803 0/0:88,0:85:99:0,181,2504 0/0:65,0:64:99:0,100,1857 0/0:70,0:70:99:0,135,2108 0/0:49,1:50:28.03:0,28,1257 0/0:69,0:69:99:0,127,1960 0/0:63,0:63:85.23:0,85,1591 0/0:66,0:64:99:0,108,1961 0/0:212,1:213:99:0,173,5382 0/0:44,0:44:54.61:0,55,1197 0/0:68,0:68:55.42:0,55,1766 0/0:58,0:58:10.70:0,11,1518 0/0:115,0:115:99:0,102,2951 0/0:97,0:97:99:0,166,2742 0/0:111,0:111:99:0,112,2765 0/0:78,0:78:99:0,106,2004 0/0:87,0:87:99:0,126,2376 0/0:61,0:60:99:0,130,1894 0/0:58,0:56:57.47:0,57,1602 0/0:51,0:51:30.86:0,31,1377 0/0:67,0:67:70.06:0,70,1937 0/0:59,0:59:99:0,124,1699 0/0:42,0:42:48.61:0,49,1092 0/0:80,0:80:55.92:0,56,1962 0/0:57,0:57:99:0,122,1565 0/0:109,0:109:99:0,220,3187 0/0:73,0:73:99:0,178,2256 0/0:55,0:55:99:0,100,1603 0/0:43,0:43:20.71:0,21,1154 0/0:61,0:61:99:0,115,1850 0/1:93,18:110:96.37:96,0,2491 0/0:67,0:67:85.59:0,86,1879 0/0:36,0:36:30.97:0,31,864 0/0:54,0:54:36.06:0,36,1485 0/0:52,0:52:18.65:0,19,1285 0/0:64,1:64:51.87:0,52,1773 11 118244337 . C A 113.09 . AC=8;AF=0.095;AN=84;BaseQRankSum=-19.967;DP=2916;DS;Dels=0.00;FS=1416.394;HRun=1;HaplotypeScore=2.9954;InbreedingCoeff=-0.1195;MQ=59.09;MQ0=1;MQRankSum=-0.009;QD=0.27;ReadPosRankSum=-12.746 GT:AD:DP:GQ:PL 0/0:48,10:58:98.90:0,99,1561 0/1:32,10:42:54.31:54,0,840 0/1:33,9:42:7.88:8,0,926 0/0:77,15:92:99:0,158,2445 0/0:66,19:85:99:0,111,2207 0/0:62,12:74:81.75:0,82,2117 0/0:45,11:56:85.84:0,86,1663 0/0:69,17:87:99:0,162,2465 0/0:52,11:63:44.43:0,44,1583 0/0:61,8:69:88.48:0,88,1942 0/1:38,10:48:21.08:21,0,977 0/0:54,11:65:80.22:0,80,1658 0/0:44,12:56:65.54:0,66,1381 0/0:56,9:65:35.76:0,36,1546 0/0:172,40:212:46.03:0,46,4990 0/0:37,5:42:13.39:0,13,1052 0/1:56,10:66:23.01:23,0,1538 0/0:50,8:58:24.24:0,24,1429 0/0:89,21:110:91.67:0,92,2773 0/0:84,11:95:99:0,101,2236 0/0:88,19:107:65.50:0,65,2454 0/0:58,18:76:60.77:0,61,1699 0/0:69,16:85:99:0,107,2253 0/0:54,5:59:68.26:0,68,1674 0/1:43,12:55:19.68:20,0,1358 0/0:41,7:48:6.36:0,6,1280 0/0:57,8:65:1.10:5,0,1615 0/0:48,10:58:99:0,102,1476 0/0:35,5:40:89.64:0,90,1080 0/1:61,17:78:42.75:43,0,1706 0/0:45,9:54:58.99:0,59,1257 0/0:90,19:109:99:0,133,2644 0/0:63,7:70:99:0,140,1959 0/0:43,12:55:27.69:0,28,1304 0/0:34,9:43:39.86:0,40,1022 0/0:52,7:59:81.82:0,82,1655 0/0:84,17:103:40.45:0,40,2420 0/0:55,11:67:99:0,107,1687 0/1:29,5:34:23.03:23,0,763 0/0:45,9:54:8.64:0,9,1129 0/1:37,15:52:36.52:37,0,1085 0/0:53,7:60:55.07:0,55,1611 11 118277698 . C A 609.85 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.167;DP=1548;Dels=0.00;FS=1.058;HRun=1;HaplotypeScore=0.9777;InbreedingCoeff=-0.0244;MQ=58.17;MQ0=0;MQRankSum=2.199;QD=11.29;ReadPosRankSum=1.048 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,132,1565 0/0:31,0:31:78.23:0,78,961 0/0:31,0:32:81.23:0,81,952 0/0:34,0:34:96.31:0,96,1243 0/0:44,0:44:99:0,123,1580 0/0:33,0:33:93.28:0,93,1214 0/0:30,0:30:87.28:0,87,1136 0/0:30,0:30:78.25:0,78,1016 0/1:23,12:35:99:351,0,505 0/1:9,10:19:99:321,0,235 0/0:27,0:27:78.21:0,78,913 0/0:26,0:26:75.21:0,75,895 0/0:28,0:28:78.21:0,78,923 0/0:26,0:26:75.21:0,75,884 0/0:108,0:108:99:0,274,3384 0/0:23,0:23:63.19:0,63,747 0/0:31,0:31:81.24:0,81,979 0/0:35,0:35:93.26:0,93,1125 0/0:52,0:52:99:0,138,1610 0/0:51,0:51:99:0,123,1543 0/0:47,0:47:99:0,126,1503 0/0:35,0:35:99:0,99,1165 0/0:43,0:43:99:0,114,1523 0/0:36,0:36:99:0,102,1324 0/0:24,0:24:69.21:0,69,894 0/0:19,0:19:57.18:0,57,715 0/0:32,0:32:87.26:0,87,1045 0/0:41,0:41:99:0,108,1303 0/0:39,0:39:99:0,105,1265 0/0:30,0:30:90.25:0,90,1060 0/0:37,0:37:99:0,108,1261 0/0:51,0:51:99:0,141,1714 0/0:42,0:42:99:0,123,1460 0/0:34,0:34:96.27:0,96,1126 0/0:28,0:28:81.24:0,81,960 0/0:38,0:38:99:0,108,1316 0/0:54,0:54:99:0,144,1688 0/0:31,0:31:87.25:0,87,1029 0/0:29,0:29:78.24:0,78,954 0/0:28,1:29:47.81:0,48,906 0/0:36,0:36:99:0,102,1218 0/0:50,0:50:99:0,138,1660 11 118368665 . A G 16203.72 . AC=8;AF=0.095;AN=84;BaseQRankSum=30.744;DP=4717;DS;Dels=0.00;FS=0.990;HRun=0;HaplotypeScore=1.8511;InbreedingCoeff=-0.1053;MQ=59.49;MQ0=0;MQRankSum=-0.366;QD=14.10;ReadPosRankSum=-0.100 GT:AD:DP:GQ:PL 0/0:89,0:89:99:0,247,2842 0/0:83,0:83:99:0,211,2501 0/0:81,0:81:99:0,226,2664 0/1:113,100:213:99:2822,0,2864 0/0:191,0:191:99:0,514,6087 0/0:210,0:211:99:0,548,6727 0/0:186,0:186:99:0,445,5508 0/0:131,0:131:99:0,367,4260 0/0:87,0:87:99:0,241,2810 0/0:62,0:62:99:0,171,1971 0/0:94,0:94:99:0,262,3020 0/0:96,1:98:99:0,256,2913 0/0:69,0:69:99:0,180,2040 0/0:75,0:76:99:0,187,2260 0/0:249,0:250:99:0,638,7302 0/0:66,0:66:99:0,181,2101 0/0:88,0:89:99:0,226,2685 0/1:47,43:90:99:1261,0,1325 0/0:112,0:112:99:0,283,3342 0/0:109,0:109:99:0,298,3500 0/0:117,0:117:99:0,304,3513 0/0:53,1:54:99:0,101,1547 0/1:103,115:218:99:3492,0,2552 0/1:92,75:167:99:2165,0,2381 0/1:105,88:193:99:2806,0,2701 0/0:173,0:173:99:0,445,5316 0/0:61,0:63:99:0,159,1880 0/0:100,0:100:99:0,268,3140 0/0:87,0:87:99:0,247,2815 0/0:92,0:92:99:0,253,2918 0/0:94,0:94:99:0,253,2960 0/0:109,0:109:99:0,289,3455 0/0:63,0:63:99:0,183,2066 0/0:91,0:92:99:0,256,2989 0/0:71,0:71:99:0,196,2267 0/0:92,0:93:99:0,256,2936 0/0:88,0:88:99:0,232,2717 0/0:102,0:102:99:0,271,3104 0/0:86,0:86:99:0,232,2692 0/1:46,38:84:99:1088,0,1242 0/1:48,47:95:99:1394,0,1183 0/1:48,41:89:99:1176,0,1373 11 118471423 . T C 28926.26 . AC=11;AF=0.131;AN=84;BaseQRankSum=25.709;DP=6492;DS;Dels=0.00;FS=0.443;HRun=1;HaplotypeScore=1.8471;InbreedingCoeff=-0.1507;MQ=59.59;MQ0=0;MQRankSum=-2.771;QD=15.37;ReadPosRankSum=0.584 GT:AD:DP:GQ:PL 0/0:116,0:116:99:0,337,4097 0/0:130,0:131:99:0,364,4441 0/0:124,0:124:99:0,352,4280 0/0:212,0:212:99:0,614,7483 0/0:211,0:211:99:0,608,7576 0/1:98,105:203:99:3419,0,3096 0/1:103,93:196:99:2919,0,3264 0/1:98,91:190:99:2894,0,2916 0/1:67,72:139:99:2162,0,2014 0/1:78,60:138:99:1708,0,2352 0/0:140,0:140:99:0,400,4841 0/0:118,0:118:99:0,343,4163 0/0:121,0:121:99:0,352,4285 0/0:139,0:139:99:0,394,4838 0/1:89,113:202:99:3492,0,2514 0/1:56,56:112:99:1780,0,1584 0/0:128,0:128:99:0,364,4483 0/0:124,0:124:99:0,358,4338 0/1:97,119:216:99:3503,0,2703 0/1:106,107:213:99:3251,0,3132 0/0:201,0:201:99:0,584,7069 0/0:146,1:147:99:0,412,5000 0/0:211,0:211:99:0,611,7538 0/0:189,0:189:99:0,542,6779 0/0:200,0:201:99:0,578,7168 0/0:211,0:211:99:0,587,7331 0/0:99,0:99:99:0,289,3534 0/0:127,0:127:99:0,370,4506 0/0:111,0:111:99:0,322,3947 0/0:125,0:125:99:0,361,4394 0/0:115,0:115:99:0,331,4060 0/0:200,0:200:99:0,551,6815 0/1:77,69:146:99:2069,0,2127 0/0:122,0:122:99:0,361,4447 0/0:130,0:130:99:0,370,4544 0/0:119,0:119:99:0,346,4236 0/0:209,1:210:99:0,599,7184 0/0:137,0:137:99:0,394,4796 0/1:70,57:127:99:1729,0,2140 0/0:158,0:158:99:0,451,5536 0/0:111,0:111:99:0,319,3886 0/0:121,0:121:99:0,349,4288 11 118486813 . C T 1026.99 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.992;DP=4526;DS;Dels=0.00;FS=0.614;HRun=1;HaplotypeScore=2.4965;InbreedingCoeff=-0.0120;MQ=59.42;MQ0=0;MQRankSum=-1.374;QD=10.17;ReadPosRankSum=-1.397 GT:AD:DP:GQ:PL 0/0:76,0:76:99:0,214,2654 0/0:83,0:83:99:0,232,2862 0/0:57,0:57:99:0,147,1879 0/0:250,0:250:99:0,692,9193 0/0:203,0:203:99:0,581,7689 0/0:132,0:132:99:0,361,4814 0/0:147,0:148:99:0,418,5453 0/0:158,0:158:99:0,442,5857 0/0:81,0:81:99:0,217,2742 0/0:80,0:80:99:0,211,2663 0/0:73,0:73:99:0,202,2536 0/0:64,0:64:99:0,175,2208 0/0:55,0:55:99:0,144,1818 0/0:68,0:68:99:0,184,2276 0/0:239,0:239:99:0,626,7954 0/0:72,0:72:99:0,199,2473 0/0:92,0:92:99:0,253,3186 0/0:59,0:59:99:0,162,1997 0/0:141,0:141:99:0,367,4546 0/0:172,0:172:99:0,448,5670 0/0:156,0:157:99:0,433,5469 0/0:95,0:95:99:0,268,3318 0/0:243,0:243:99:0,680,9059 0/0:102,0:102:99:0,274,3638 0/0:143,0:143:99:0,400,5259 0/0:108,0:109:99:0,316,4083 0/0:64,0:64:99:0,178,2233 0/0:79,0:79:99:0,226,2796 0/0:75,0:75:99:0,211,2577 0/0:72,0:73:99:0,190,2429 0/0:69,0:69:99:0,196,2438 0/0:126,0:126:99:0,340,4274 0/0:115,0:115:99:0,313,3967 0/0:70,0:70:99:0,196,2424 0/0:76,0:76:99:0,208,2622 0/0:87,0:87:99:0,229,2910 0/0:145,0:147:99:0,370,4626 0/0:90,0:90:99:0,262,3260 0/0:64,0:64:99:0,181,2274 0/0:67,0:67:99:0,196,2428 0/0:70,0:70:99:0,193,2417 0/1:60,41:101:99:1073,0,1813 11 118502121 . A G 5498.36 . AC=10;AF=0.119;AN=84;BaseQRankSum=16.555;DP=1310;Dels=0.00;FS=10.635;HRun=0;HaplotypeScore=0.7482;InbreedingCoeff=-0.1355;MQ=58.82;MQ0=0;MQRankSum=1.077;QD=16.17;ReadPosRankSum=0.243 GT:AD:DP:GQ:PL 0/1:7,11:18:99:349,0,190 0/1:12,12:24:99:318,0,316 0/0:18,1:19:16.35:0,16,531 0/1:20,26:46:99:892,0,553 0/1:16,24:40:99:859,0,431 0/0:31,0:31:84.24:0,84,1006 0/0:25,0:25:75.19:0,75,861 0/0:29,0:29:81.21:0,81,937 0/0:28,0:28:75.20:0,75,867 0/0:18,0:18:54.14:0,54,602 0/0:20,0:20:60.14:0,60,668 0/1:19,9:28:99:220,0,560 0/0:26,0:26:78.22:0,78,895 0/1:18,12:30:99:358,0,518 0/0:89,0:89:99:0,232,2681 0/0:44,0:44:99:0,126,1442 0/0:30,0:30:84.23:0,84,983 0/1:9,13:22:99:387,0,245 0/1:34,27:62:99:781,0,1007 0/0:42,0:42:99:0,111,1284 0/0:45,0:45:99:0,126,1495 0/0:28,0:28:78.22:0,78,895 0/1:18,34:52:99:1124,0,462 0/0:27,0:27:72.21:0,72,850 0/0:26,0:26:78.17:0,78,863 0/1:11,7:18:99:210,0,311 0/0:15,0:15:42.10:0,42,473 0/0:28,0:28:72.20:0,72,838 0/0:22,0:22:63.16:0,63,707 0/0:26,0:26:66.20:0,66,802 0/0:33,0:33:87.25:0,87,1027 0/0:35,0:35:96.24:0,96,1114 0/0:34,0:34:99:0,99,1148 0/0:28,0:28:81.25:0,81,971 0/0:19,0:19:57.17:0,57,667 0/0:23,0:23:63.19:0,63,745 0/0:44,1:46:99:0,101,1350 0/0:26,0:26:66.19:0,66,766 0/0:35,1:36:96.28:0,96,1136 0/0:25,0:25:72.20:0,72,844 0/0:25,0:25:72.18:0,72,816 0/0:22,0:22:63.18:0,63,733 11 118502172 . C T 2350.70 . AC=10;AF=0.119;AN=84;BaseQRankSum=-12.089;DP=983;Dels=0.00;FS=0.831;HRun=0;HaplotypeScore=0.5408;InbreedingCoeff=-0.1352;MQ=59.00;MQ0=0;MQRankSum=1.251;QD=11.09;ReadPosRankSum=-1.739 GT:AD:DP:GQ:PL 0/0:21,0:21:57.17:0,57,705 0/1:9,9:18:99:219,0,256 0/1:11,10:21:99:252,0,336 0/0:42,0:42:99:0,108,1440 0/1:21,12:33:99:300,0,639 0/1:13,13:26:99:332,0,415 0/1:13,8:21:99:214,0,369 0/0:17,0:17:42.14:0,42,574 0/0:16,0:16:42.14:0,42,551 0/0:9,0:9:27.08:0,27,331 0/0:16,0:16:45.14:0,45,571 0/0:27,0:27:78.24:0,78,983 0/0:14,0:14:36.12:0,36,477 0/0:22,0:22:54.17:0,54,704 0/0:68,0:68:99:0,193,2403 0/0:28,0:28:78.21:0,78,940 0/0:14,0:14:42.13:0,42,530 0/0:15,0:15:42.13:0,42,516 0/0:47,0:48:99:0,126,1620 0/0:28,0:28:69.21:0,69,883 0/0:33,0:33:90.27:0,90,1146 0/1:13,13:26:99:327,0,367 0/0:31,0:31:90.30:0,90,1227 0/1:10,6:16:99:166,0,290 0/0:22,0:22:57.18:0,57,769 0/1:10,5:16:99:129,0,291 0/1:6,12:18:99:307,0,184 0/1:8,9:17:99:238,0,225 0/0:21,0:21:63.20:0,63,801 0/0:20,0:20:60.19:0,60,757 0/0:22,0:22:57.18:0,57,730 0/0:32,0:32:84.26:0,84,1070 0/0:28,0:28:72.22:0,72,927 0/0:15,0:15:39.13:0,39,512 0/0:9,0:9:27.09:0,27,343 0/0:21,0:21:63.20:0,63,805 0/0:32,0:32:84.27:0,84,1077 0/0:21,0:21:57.18:0,57,719 0/0:22,0:22:63.20:0,63,804 0/0:15,0:15:39.12:0,39,494 0/0:19,0:19:54.17:0,54,690 0/0:23,0:23:69.21:0,69,858 11 118534082 . C T 1735.94 . AC=10;AF=0.119;AN=84;BaseQRankSum=-6.160;DP=636;Dels=0.00;FS=4.267;HRun=2;HaplotypeScore=0.4136;InbreedingCoeff=-0.1361;MQ=59.28;MQ0=0;MQRankSum=0.561;QD=10.27;ReadPosRankSum=-0.006 GT:AD:DP:GQ:PL 0/0:18,0:18:51.15:0,51,629 0/0:11,0:11:33.11:0,33,423 0/1:5,4:9:94.12:121,0,94 0/0:10,0:10:21.07:0,21,287 0/0:14,0:14:36.09:0,36,461 0/1:7,1:8:15.93:16,0,242 0/0:18,0:18:48.15:0,48,639 0/1:4,5:9:71.48:125,0,71 0/0:13,0:13:39.12:0,39,476 0/0:13,0:13:39.12:0,39,475 0/0:16,0:16:39.11:0,39,483 0/0:13,0:13:30.10:0,30,396 0/0:15,0:15:36.12:0,36,473 0/0:14,0:14:33.11:0,33,429 0/1:21,33:55:99:774,0,517 0/1:8,7:16:99:152,0,212 0/1:4,4:8:94.62:125,0,95 0/0:15,0:15:39.13:0,39,509 0/0:29,0:29:78.24:0,78,969 0/0:34,0:34:87.28:0,87,1133 0/0:32,0:34:78.24:0,78,990 0/0:10,0:10:27.08:0,27,327 0/0:13,0:13:36.12:0,36,484 0/0:7,0:7:21.07:0,21,284 0/0:11,0:11:27.09:0,27,369 0/0:7,0:7:18.06:0,18,250 0/0:9,0:9:27.04:0,27,296 0/0:15,0:15:36.09:0,36,446 0/0:8,0:8:24.05:0,24,293 0/1:6,6:12:99:153,0,167 0/0:14,0:14:36.10:0,36,436 0/0:26,0:26:66.21:0,66,864 0/1:10,7:17:99:208,0,294 0/0:12,0:12:33.10:0,33,416 0/0:7,0:7:21.06:0,21,263 0/0:19,0:19:48.15:0,48,617 0/1:16,6:22:99:124,0,491 0/0:13,0:13:30.08:0,30,364 0/1:10,3:13:69.94:70,0,276 0/0:13,0:13:30.09:0,30,363 0/0:5,0:5:15.04:0,15,177 0/0:11,0:11:33.10:0,33,398 11 118634011 . G A 1297.47 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.364;DP=5288;DS;Dels=0.00;FS=6.521;HRun=0;HaplotypeScore=1.7793;InbreedingCoeff=-0.0120;MQ=59.56;MQ0=0;MQRankSum=0.867;QD=11.69;ReadPosRankSum=0.293 GT:AD:DP:GQ:PL 0/0:109,0:109:99:0,292,3577 0/0:99,0:99:99:0,274,3257 0/0:92,0:93:99:0,244,3011 0/0:190,0:190:99:0,524,6826 0/0:175,0:175:99:0,500,6620 0/0:185,1:186:99:0,475,6567 0/0:166,2:169:99:0,422,5930 0/0:157,0:158:99:0,430,5631 0/0:88,0:88:99:0,256,3070 0/0:114,1:115:99:0,271,3669 0/0:84,0:84:99:0,238,2889 0/0:103,0:103:99:0,289,3504 0/0:94,0:94:99:0,253,3076 0/0:76,0:76:99:0,220,2654 0/0:234,0:234:99:0,626,7578 0/0:81,0:81:99:0,229,2755 0/0:99,0:99:99:0,295,3517 0/0:94,0:94:99:0,259,3110 0/0:207,1:208:99:0,551,6635 0/0:185,0:185:99:0,509,6259 0/0:190,0:191:99:0,499,6092 0/0:119,0:119:99:0,328,3996 0/0:189,0:189:99:0,515,6870 0/0:129,0:129:99:0,364,4838 0/0:152,0:152:99:0,424,5630 0/0:136,1:137:99:0,367,4897 0/0:73,0:73:99:0,196,2415 0/0:111,0:111:99:0,313,3763 0/0:95,0:95:99:0,271,3261 0/0:81,0:81:99:0,220,2639 0/0:87,0:87:99:0,241,2946 0/0:196,0:196:99:0,511,6215 0/1:63,48:111:99:1344,0,1731 0/0:94,0:94:99:0,265,3192 0/0:104,0:104:99:0,292,3517 0/0:112,0:112:99:0,328,3935 0/0:166,1:167:99:0,421,5315 0/0:112,0:112:99:0,313,3710 0/0:86,0:86:99:0,247,2954 0/0:110,1:111:99:0,269,3626 0/0:102,0:102:99:0,283,3436 0/0:89,0:89:99:0,235,2827 11 118827925 . G A 792.04 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.119;DP=4683;DS;Dels=0.00;FS=1.367;HRun=0;HaplotypeScore=2.5909;InbreedingCoeff=-0.0120;MQ=59.14;MQ0=0;MQRankSum=0.372;QD=12.38;ReadPosRankSum=0.860 GT:AD:DP:GQ:PL 0/1:32,31:64:99:838,0,825 0/0:77,0:77:99:0,199,2348 0/0:76,0:76:99:0,214,2507 0/0:228,0:228:99:0,593,7638 0/0:226,1:227:99:0,572,7463 0/0:155,0:155:99:0,418,5293 0/0:135,0:135:99:0,355,4522 0/0:163,0:163:99:0,427,5462 0/0:72,0:72:99:0,193,2261 0/0:64,0:64:99:0,174,2041 0/0:75,0:75:99:0,205,2381 0/0:63,0:63:99:0,168,1969 0/0:52,0:52:99:0,138,1621 0/0:69,0:69:99:0,187,2170 0/0:230,0:230:99:0,584,6962 0/0:69,0:69:99:0,202,2314 0/0:83,0:83:99:0,229,2666 0/0:80,0:80:99:0,223,2572 0/0:176,0:176:99:0,466,5441 0/0:176,0:176:99:0,442,5349 0/0:198,1:199:99:0,504,6128 0/0:117,0:117:99:0,298,3549 0/0:239,0:240:99:0,632,8146 0/0:124,0:126:99:0,316,4064 0/0:159,0:159:99:0,415,5291 0/0:120,3:123:99:0,226,3955 0/0:66,0:66:99:0,190,2186 0/0:66,0:66:99:0,177,2066 0/0:63,0:63:99:0,174,1991 0/0:68,0:68:99:0,177,2064 0/0:69,0:69:99:0,190,2252 0/0:181,0:181:99:0,454,5553 0/0:118,0:118:99:0,319,3723 0/0:77,0:77:99:0,217,2470 0/0:77,0:77:99:0,202,2374 0/0:74,0:74:99:0,196,2293 0/0:164,0:165:99:0,409,4872 0/0:70,0:70:99:0,196,2252 0/0:75,0:75:99:0,211,2467 0/0:77,0:77:99:0,214,2509 0/0:71,0:71:99:0,196,2261 0/0:68,0:68:99:0,174,2080 11 118849713 . T C 3230.05 . AC=1;AF=0.012;AN=84;BaseQRankSum=6.370;DP=7147;DS;Dels=0.00;FS=2.534;HRun=0;HaplotypeScore=3.0211;InbreedingCoeff=-0.0120;MQ=59.54;MQ0=0;MQRankSum=0.035;QD=13.13;ReadPosRankSum=0.423 GT:AD:DP:GQ:PL 0/0:139,0:139:99:0,370,4589 0/0:127,0:127:99:0,337,4164 0/0:132,0:132:99:0,340,4261 0/0:250,0:250:99:0,698,8584 0/0:250,0:250:99:0,704,8821 0/0:248,0:248:99:0,692,8867 0/0:218,0:218:99:0,602,7628 0/1:138,108:246:99:3276,0,3959 0/0:148,0:148:99:0,388,4825 0/0:126,0:126:99:0,337,4124 0/0:128,0:128:99:0,346,4294 0/0:113,0:113:99:0,313,3835 0/0:123,0:123:99:0,304,3796 0/0:108,0:108:99:0,295,3658 0/0:250,0:250:99:0,692,8301 0/0:125,0:125:99:0,337,4165 0/0:126,0:126:99:0,337,4183 0/0:116,0:116:99:0,334,4027 0/0:250,0:250:99:0,671,8341 0/0:250,0:250:99:0,683,8474 0/0:247,0:247:99:0,668,8316 0/0:173,0:173:99:0,469,5766 0/0:245,0:245:99:0,704,8595 0/0:221,0:221:99:0,593,7510 0/0:249,0:249:99:0,680,8512 0/0:235,0:235:99:0,650,8033 0/0:100,0:100:99:0,283,3434 0/0:143,0:143:99:0,391,4777 0/0:116,0:116:99:0,313,3817 0/0:118,0:118:99:0,319,3879 0/0:106,0:106:99:0,286,3554 0/0:245,0:245:99:0,653,8131 0/0:170,0:170:99:0,448,5531 0/0:113,0:113:99:0,316,3860 0/0:152,0:152:99:0,412,5094 0/0:145,0:145:99:0,388,4837 0/0:250,0:250:99:0,647,7982 0/0:149,0:149:99:0,400,4919 0/0:125,0:125:99:0,328,4075 0/0:144,0:145:99:0,388,4794 0/0:112,0:112:99:0,307,3762 0/0:113,0:114:99:0,310,3804 11 118925262 . C CGGGGT 136.13 . AC=5;AF=0.060;AN=84;BaseQRankSum=7.605;DP=2574;FS=1001.315;HRun=0;HaplotypeScore=343.0424;InbreedingCoeff=-0.0755;MQ=59.76;MQ0=0;MQRankSum=6.357;QD=0.34;ReadPosRankSum=-14.881 GT:AD:DP:GQ:PL 0/0:52,0:52:63.35:0,63,1647 0/0:33,0:33:50.83:0,51,975 0/0:42,0:42:7.18:0,7,1166 0/0:100,1:126:99:0,166,3898 0/0:81,0:89:99:0,134,3320 0/0:78,0:78:99:0,123,3317 0/0:67,0:68:99:0,106,2964 0/0:58,1:73:40.75:0,41,2406 0/0:48,0:48:62.50:0,62,1841 0/0:37,0:37:8.75:0,9,1081 0/0:47,0:48:45.36:0,45,1443 0/0:32,0:32:17.53:0,18,856 0/1:36,0:36:18.69:19,0,1037 0/0:31,0:32:18.14:0,18,758 0/1:109,1:162:99:113,0,4343 0/0:39,0:40:44.34:0,44,1211 0/0:40,0:40:51.29:0,51,1059 0/0:45,0:45:41.30:0,41,1325 0/1:46,0:64:60.34:60,0,1534 0/0:93,0:95:99:0,173,3714 0/0:56,0:79:48.81:0,49,2028 0/0:52,0:52:54.01:0,54,1359 0/0:95,1:127:99:0,226,4732 0/0:57,1:63:97.43:0,97,2157 0/0:79,0:82:99:0,136,3261 0/0:54,0:68:84.44:0,84,2592 0/0:33,0:33:24.11:0,24,921 0/0:54,0:54:71.44:0,71,1796 0/0:47,0:47:29.95:0,30,1169 0/0:42,0:42:47.36:0,47,1387 0/0:52,0:52:65.78:0,66,1807 0/0:104,1:105:99:0,118,3389 0/0:48,0:48:60.54:0,61,2135 0/0:46,0:46:49.41:0,49,1462 0/0:47,0:47:50.32:0,50,1388 0/1:59,0:59:21.23:21,0,2190 0/1:56,0:82:27.02:27,0,2388 0/0:46,0:46:2.19:2,0,1498 0/0:33,0:33:66.27:0,66,1344 0/0:61,0:61:45.33:0,45,1991 0/0:37,0:37:44.22:0,44,1084 0/0:57,0:57:51.49:0,51,1842 11 118925341 . G A 25810.15 . AC=35;AF=0.417;AN=84;BaseQRankSum=-18.914;DP=2176;Dels=0.00;FS=7.144;HRun=0;HaplotypeScore=1.1836;InbreedingCoeff=0.0694;MQ=58.75;MQ0=0;MQRankSum=0.785;QD=20.04;ReadPosRankSum=0.392 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1535,126,0 0/1:18,17:35:99:483,0,479 0/0:41,0:41:99:0,117,1447 0/1:50,38:89:99:1050,0,1480 0/1:23,34:57:99:1004,0,711 0/1:25,19:44:99:549,0,778 0/0:46,0:46:99:0,114,1542 0/1:18,21:39:99:594,0,557 0/0:47,0:47:99:0,126,1570 0/1:20,17:37:99:417,0,603 0/0:47,2:49:84.64:0,85,1542 1/1:1,35:36:99:1192,99,0 1/1:1,39:40:73.03:1213,73,0 1/1:0,38:38:99:1329,111,0 0/0:175,0:175:99:0,463,5763 0/0:41,0:41:99:0,117,1422 0/1:19,27:46:99:703,0,578 0/1:24,19:43:99:503,0,777 0/1:31,38:69:99:1129,0,812 1/1:0,85:85:99:2821,232,0 1/1:0,62:62:99:2071,172,0 0/1:19,28:47:99:835,0,541 0/0:102,0:102:99:0,268,3533 0/1:24,16:40:99:391,0,855 0/1:31,23:54:99:630,0,957 0/0:44,0:44:99:0,126,1660 0/1:8,15:23:99:462,0,234 1/1:0,42:42:99:1450,120,0 0/0:45,0:45:99:0,126,1594 0/1:25,29:54:99:779,0,768 1/1:0,40:40:99:1399,117,0 0/1:35,39:74:99:1124,0,954 0/0:54,0:54:99:0,138,1721 0/0:43,0:43:99:0,123,1544 0/1:22,23:45:99:631,0,666 0/1:13,16:29:99:467,0,379 0/0:85,0:85:99:0,238,2852 0/1:19,14:33:99:359,0,570 0/1:17,24:41:99:690,0,452 0/0:41,0:41:99:0,120,1461 0/0:36,0:36:99:0,105,1275 0/0:39,0:39:99:0,114,1375 11 118959973 . A T 1958.08 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.498;DP=5389;DS;Dels=0.00;FS=28.276;HRun=0;HaplotypeScore=2.2045;InbreedingCoeff=-0.0120;MQ=59.50;MQ0=0;MQRankSum=-1.202;QD=15.92;ReadPosRankSum=1.626 GT:AD:DP:GQ:PL 0/0:105,0:105:99:0,289,3642 0/0:115,0:116:99:0,304,3842 0/0:97,0:97:99:0,259,3292 0/0:158,0:158:99:0,445,5765 0/1:58,65:123:99:2004,0,1836 0/0:146,0:146:99:0,406,5368 0/0:156,0:156:99:0,418,5507 0/0:159,0:159:99:0,436,5705 0/0:112,0:112:99:0,301,3779 0/0:100,0:100:99:0,277,3410 0/0:96,0:96:99:0,271,3365 0/0:97,0:97:99:0,268,3369 0/0:92,0:92:99:0,247,3152 0/0:109,0:109:99:0,292,3663 0/0:249,0:249:99:0,671,8448 0/0:87,0:87:99:0,241,3001 0/0:105,0:105:99:0,298,3697 0/0:115,0:115:99:0,313,3936 0/0:176,0:178:99:0,475,5990 0/0:176,0:176:99:0,481,5978 0/0:161,0:161:99:0,454,5658 0/0:114,0:115:99:0,319,3972 0/0:164,0:164:99:0,473,6135 0/0:151,0:151:99:0,415,5396 0/0:175,0:175:99:0,466,6113 0/0:155,0:155:99:0,430,5591 0/0:81,0:81:99:0,226,2820 0/0:97,0:97:99:0,277,3406 0/0:86,0:86:99:0,244,3022 0/0:98,0:98:99:0,259,3270 0/0:89,0:89:99:0,253,3177 0/0:200,0:200:99:0,530,6754 0/0:156,0:156:99:0,445,5530 0/0:117,0:117:99:0,322,4028 0/0:105,0:105:99:0,280,3548 0/0:118,0:118:99:0,325,4103 0/0:197,0:197:99:0,533,6663 0/0:110,0:110:99:0,310,3808 0/0:114,0:114:99:0,325,4045 0/0:103,0:103:99:0,295,3722 0/0:109,1:110:99:0,305,3786 0/0:111,0:111:99:0,310,3892 11 118962230 . G T 301.86 . AC=9;AF=0.150;AN=60;BaseQRankSum=-3.078;DP=74;Dels=0.00;FS=12.648;HRun=1;HaplotypeScore=0.1412;InbreedingCoeff=0.0558;MQ=57.95;MQ0=0;MQRankSum=-0.353;QD=14.37;ReadPosRankSum=-0.022 GT:AD:DP:GQ:PL 0/0:2,0:2:3.01:0,3,39 0/0:3,0:3:9.03:0,9,114 0/0:1,0:1:3.01:0,3,39 ./. 0/0:1,0:1:3.01:0,3,39 ./. ./. ./. 0/0:3,0:3:9.03:0,9,118 1/1:0,1:1:3.01:37,3,0 0/1:1,3:4:26.54:98,0,27 0/1:4,3:7:90.69:91,0,126 ./. 0/0:1,0:1:3.01:0,3,40 0/0:11,0:11:33.11:0,33,420 0/0:3,0:3:9.03:0,9,106 0/0:2,0:2:6.02:0,6,77 0/0:1,0:1:3.01:0,3,38 0/0:3,0:3:9.03:0,9,115 0/0:2,0:2:6.02:0,6,74 0/0:5,0:5:12.04:0,12,161 1/1:1,1:2:3.01:37,3,0 0/0:1,0:1:3.01:0,3,41 ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,33 0/0:1,0:1:3.01:0,3,37 ./. 0/0:3,0:3:9.03:0,9,113 0/0:2,0:2:6.02:0,6,77 0/0:2,0:2:6.02:0,6,69 0/1:0,1:1:1.76:37,3,0 ./. 0/0:2,0:2:6.02:0,6,69 0/0:1,0:1:3.01:0,3,37 0/1:1,2:3:29.55:64,0,30 ./. 0/0:1,0:1:3.01:0,3,38 0/1:1,2:3:30.96:39,0,31 11 118984906 . A C 315.36 . 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G A 1241.92 . 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A G 4123.33 . 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C G 1142.76 . 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G A 2047.13 . 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C T 329.33 . 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A G 41749.09 . AC=70;AF=0.833;AN=84;BaseQRankSum=12.256;DP=1523;Dels=0.00;FS=1.658;HRun=0;HaplotypeScore=0.8619;InbreedingCoeff=-0.0286;MQ=59.34;MQ0=0;MQRankSum=0.551;QD=28.65;ReadPosRankSum=-0.048 GT:AD:DP:GQ:PL 1/1:0,23:23:66.21:818,66,0 0/1:10,11:21:99:321,0,289 0/1:7,6:13:99:164,0,209 0/1:34,24:58:99:689,0,939 0/0:66,0:66:99:0,178,2180 1/1:0,39:39:99:1362,102,0 1/1:0,42:42:99:1401,108,0 1/1:0,46:46:99:1581,123,0 1/1:0,19:19:57.18:693,57,0 1/1:0,21:21:60.19:734,60,0 1/1:0,45:45:99:1552,123,0 1/1:0,18:18:54.16:651,54,0 1/1:0,28:28:78.23:936,78,0 0/1:11,8:19:99:221,0,317 1/1:0,123:123:99:3917,313,0 1/1:0,30:30:90.27:1087,90,0 1/1:0,35:35:99:1234,99,0 1/1:0,21:21:60.18:728,60,0 1/1:0,37:37:93.29:1184,93,0 1/1:0,43:43:99:1356,108,0 0/1:24,18:42:99:491,0,615 1/1:0,32:32:90.28:1116,90,0 1/1:0,71:71:99:2545,193,0 1/1:0,44:44:99:1607,120,0 1/1:0,32:32:87.27:1141,87,0 1/1:0,44:44:99:1584,117,0 1/1:0,23:23:66.19:785,66,0 1/1:0,26:26:78.24:955,78,0 1/1:0,27:27:75.22:905,75,0 0/1:18,17:35:99:487,0,538 0/1:12,16:28:99:454,0,329 0/1:32,24:57:99:679,0,914 1/1:0,27:27:75.24:948,75,0 0/1:16,19:35:99:594,0,456 1/1:0,23:23:66.21:823,66,0 0/1:12,21:33:99:615,0,334 0/1:20,16:36:99:440,0,508 1/1:0,30:30:75.22:930,75,0 0/1:13,15:28:99:475,0,380 1/1:0,38:38:99:1353,111,0 1/1:0,30:30:75.24:953,75,0 1/1:0,35:35:99:1239,99,0 11 120099649 . T G 57.94 . AC=7;AF=0.083;AN=84;BaseQRankSum=-15.817;DP=988;Dels=0.00;FS=115.076;HRun=5;HaplotypeScore=2.4346;InbreedingCoeff=-0.1066;MQ=57.26;MQ0=0;MQRankSum=1.297;QD=0.29;ReadPosRankSum=-6.900 GT:AD:DP:GQ:PL 0/0:16,5:21:25.38:0,25,469 0/0:14,1:15:36.10:0,36,425 0/1:15,3:18:33.72:34,0,346 0/1:25,12:38:21.14:21,0,671 0/1:37,15:52:17.90:18,0,1018 0/0:24,3:28:17.06:0,17,723 0/1:24,10:34:15.55:16,0,658 0/0:24,5:29:41.51:0,42,721 0/0:12,3:15:30.05:0,30,325 0/0:7,2:9:20.42:0,20,215 0/0:11,5:16:27.06:0,27,302 0/0:12,3:16:36.08:0,36,395 0/0:10,6:16:1.59:4,0,239 0/0:18,3:21:54.12:0,54,607 0/0:40,11:52:56.90:0,57,1088 0/1:13,16:29:51.63:52,0,389 0/0:14,2:16:17.45:0,17,441 0/1:13,8:21:14.29:14,0,314 0/0:14,5:20:2.66:0,3,346 0/0:21,10:32:63.15:0,63,701 0/0:12,9:21:16.41:0,16,398 0/0:16,6:22:48.11:0,48,523 0/0:26,9:35:75.18:0,75,825 0/0:26,5:31:69.16:0,69,785 0/0:18,12:31:29.32:0,29,538 0/0:15,5:21:20.40:0,20,410 0/0:12,5:17:36.07:0,36,394 0/0:18,4:22:48.11:0,48,531 0/0:14,2:16:42.11:0,42,475 0/0:13,4:17:36.07:0,36,396 0/0:16,2:18:42.11:0,42,484 0/0:33,12:46:39.52:0,40,975 0/0:23,3:26:66.15:0,66,725 0/0:9,4:14:27.06:0,27,297 0/0:14,7:22:20.42:0,20,453 0/0:24,7:31:43.46:0,43,701 0/0:16,6:22:17.46:0,17,482 0/1:5,5:10:11.59:12,0,146 0/0:14,4:18:39.09:0,39,438 0/0:17,3:20:45.07:0,45,481 0/0:12,3:15:33.08:0,33,359 0/0:10,5:15:10.40:0,10,335 11 120099658 . A G 19619.51 . AC=74;AF=0.881;AN=84;BaseQRankSum=-0.383;DP=766;Dels=0.01;FS=8.998;HRun=0;HaplotypeScore=1.9924;InbreedingCoeff=0.1015;MQ=57.47;MQ0=0;MQRankSum=1.198;QD=26.19;ReadPosRankSum=-0.183 GT:AD:DP:GQ:PL 1/1:0,15:15:45.10:498,45,0 1/1:0,13:13:33.08:364,33,0 1/1:0,13:13:30.08:330,30,0 1/1:0,21:21:54.14:613,54,0 1/1:1,31:33:81.22:979,81,0 1/1:0,24:24:63.14:726,63,0 1/1:0,23:23:63.16:743,63,0 1/1:0,21:21:57.15:660,57,0 1/1:0,14:14:33.08:366,33,0 1/1:0,10:10:27.07:304,27,0 1/1:0,13:13:33.08:378,33,0 1/1:0,13:13:36.06:374,36,0 1/1:0,13:13:36.10:404,36,0 1/1:0,16:16:42.07:445,42,0 1/1:0,42:42:99:1229,108,0 1/1:0,20:21:54.08:572,54,0 1/1:0,15:15:42.10:463,42,0 0/0:16,0:17:36.09:0,36,406 0/1:6,8:15:99:224,0,146 1/1:0,24:24:60.10:641,60,0 1/1:0,15:15:36.07:393,36,0 1/1:0,18:18:51.10:529,51,0 1/1:0,25:25:63.14:708,63,0 1/1:0,23:23:63.15:729,63,0 1/1:0,22:22:63.16:740,63,0 1/1:0,15:16:42.09:486,42,0 1/1:0,11:11:33.05:340,33,0 1/1:0,14:14:39.10:425,39,0 0/1:4,9:13:83.81:265,0,84 0/1:9,9:18:99:230,0,240 1/1:0,19:19:48.13:552,48,0 1/1:0,37:37:99:1086,99,0 0/1:15,13:28:99:256,0,417 1/1:0,10:10:27.05:280,27,0 1/1:0,19:19:48.12:531,48,0 1/1:0,28:28:66.17:750,66,0 0/1:9,7:16:99:160,0,165 0/1:6,1:7:12.54:13,0,158 0/1:10,4:14:92.03:92,0,299 1/1:0,15:15:36.08:408,36,0 1/1:0,10:10:24.07:283,24,0 0/1:4,3:7:49.37:49,0,122 11 120099673 . T C 11.52 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.290;DP=919;Dels=0.00;FS=36.767;HRun=1;HaplotypeScore=0.9650;InbreedingCoeff=-0.0207;MQ=56.82;MQ0=0;MQRankSum=-0.484;QD=0.68;ReadPosRankSum=-2.880 GT:AD:DP:GQ:PL 0/0:8,1:9:2.71:1,0,232 0/0:19,2:21:36.09:0,36,405 0/0:12,5:17:30.08:0,30,341 0/0:37,2:39:90.23:0,90,1000 0/0:30,12:42:50.53:0,51,806 0/0:21,2:23:45.11:0,45,516 0/0:24,4:29:57.16:0,57,652 0/0:23,4:27:45.11:0,45,494 0/0:11,2:13:27.05:0,27,290 0/0:12,1:13:36.09:0,36,396 0/0:14,2:16:33.08:0,33,363 0/0:12,1:13:24.06:0,24,271 0/0:18,0:18:39.11:0,39,440 0/0:12,5:17:11.39:0,11,312 0/0:27,8:35:40.45:0,40,622 0/0:25,4:29:57.14:0,57,644 0/0:10,1:12:18.05:0,18,199 0/0:10,2:12:24.07:0,24,280 0/1:14,3:17:57.28:57,0,310 0/0:26,1:27:60.14:0,60,670 0/0:24,2:26:38.52:0,39,705 0/0:30,1:31:66.15:0,66,724 0/0:35,9:44:72.13:0,72,769 0/0:28,1:29:60.17:0,60,703 0/0:18,2:20:45.12:0,45,504 0/0:20,1:21:39.10:0,39,434 0/0:19,0:20:48.13:0,48,539 0/0:15,6:21:36.11:0,36,416 0/0:12,4:16:36.08:0,36,390 0/0:19,3:22:48.13:0,48,549 0/0:17,1:18:12.58:0,13,419 0/0:26,4:30:69.14:0,69,756 0/0:28,4:32:72.18:0,72,807 0/0:14,0:14:42.09:0,42,467 0/0:22,1:23:51.10:0,51,550 0/0:30,1:31:69.14:0,69,765 0/0:16,3:19:33.10:0,33,387 0/0:13,0:13:30.06:0,30,324 0/0:21,1:22:57.11:0,57,619 0/0:14,1:15:39.09:0,39,423 0/0:9,1:10:21.06:0,21,238 0/0:11,2:13:21.06:0,21,247 11 120099679 . G A 25138.70 . AC=64;AF=0.762;AN=84;BaseQRankSum=2.059;DP=1045;Dels=0.00;FS=1.538;HRun=0;HaplotypeScore=1.2124;InbreedingCoeff=-0.0500;MQ=56.86;MQ0=0;MQRankSum=-0.080;QD=25.42;ReadPosRankSum=0.743 GT:AD:DP:GQ:PL 1/1:0,11:11:33.09:382,33,0 1/1:0,17:17:48.12:554,48,0 1/1:0,21:21:60.11:661,60,0 1/1:0,44:45:99:1480,129,0 1/1:0,44:44:99:1500,129,0 1/1:0,26:26:78.19:895,78,0 1/1:0,29:29:87.22:1006,87,0 1/1:0,30:30:90.25:1053,90,0 0/1:10,8:18:99:225,0,230 0/1:6,9:15:99:263,0,132 0/1:10,9:20:99:245,0,278 1/1:0,16:16:45.13:531,45,0 0/1:19,3:22:34.07:34,0,569 1/1:0,18:18:51.14:598,51,0 1/1:0,45:45:99:1480,129,0 0/1:18,12:30:99:247,0,511 1/1:0,14:14:39.11:447,39,0 0/0:15,0:15:45.12:0,45,523 0/1:19,8:27:99:188,0,402 1/1:0,29:30:78.17:899,78,0 1/1:0,30:31:90.26:1064,90,0 1/1:0,32:33:96.25:1098,96,0 1/1:0,50:50:99:1698,144,0 0/1:16,12:28:99:314,0,474 1/1:0,31:31:81.24:973,81,0 0/1:9,14:23:99:402,0,253 1/1:1,22:23:57.16:662,57,0 1/1:0,20:20:51.15:599,51,0 0/1:4,10:14:99:320,0,107 0/1:9,12:21:99:297,0,229 1/1:0,18:18:54.15:630,54,0 1/1:0,36:38:96.26:1142,96,0 0/0:41,0:41:99:0,114,1313 0/1:11,4:15:98.81:99,0,292 1/1:0,27:27:69.17:802,69,0 0/1:13,18:31:99:530,0,335 0/1:8,12:20:99:318,0,115 0/1:7,11:19:99:317,0,167 0/1:16,13:29:99:322,0,455 1/1:0,14:14:39.10:452,39,0 1/1:0,10:10:30.09:359,30,0 0/1:12,4:16:55.91:56,0,331 11 120099791 . C T 4219.33 . AC=6;AF=0.071;AN=84;BaseQRankSum=2.142;DP=2423;Dels=0.00;FS=2.939;HRun=2;HaplotypeScore=1.7769;InbreedingCoeff=-0.0769;MQ=58.20;MQ0=0;MQRankSum=3.907;QD=12.30;ReadPosRankSum=0.310 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,111,1253 0/0:55,0:55:99:0,147,1729 0/0:34,0:34:90.25:0,90,1064 0/0:147,0:147:99:0,379,4757 0/0:99,0:99:99:0,262,3300 0/0:71,0:71:99:0,169,2137 0/0:63,0:63:99:0,159,2005 0/1:44,36:80:99:859,0,1244 0/0:49,0:50:99:0,129,1543 0/0:36,0:36:99:0,102,1196 0/0:29,1:31:43.43:0,43,863 0/1:29,19:48:99:481,0,734 0/1:18,14:32:99:403,0,490 0/0:46,0:46:99:0,117,1393 0/0:122,0:122:99:0,298,3515 0/0:44,0:44:99:0,114,1322 0/0:35,0:35:84.25:0,84,1025 0/0:36,0:36:99:0,99,1198 0/0:55,0:55:99:0,141,1649 0/0:83,0:83:99:0,205,2505 0/0:101,0:101:99:0,274,3227 0/0:51,0:52:99:0,129,1500 0/0:130,0:130:99:0,325,4073 0/0:65,0:65:99:0,171,2146 0/0:65,0:65:99:0,162,2061 0/0:59,0:59:99:0,153,1888 0/0:46,0:46:99:0,126,1442 0/0:52,0:52:99:0,126,1514 0/0:34,0:34:96.24:0,96,1076 0/0:50,0:50:99:0,135,1530 0/0:37,0:37:99:0,99,1136 0/1:30,38:68:99:985,0,740 0/0:60,0:60:99:0,150,1745 0/0:26,0:26:72.20:0,72,843 0/0:44,0:44:99:0,120,1401 0/0:50,0:50:99:0,129,1509 0/1:34,27:61:99:730,0,842 0/0:41,1:44:86.86:0,87,1297 0/1:25,29:54:99:762,0,690 0/0:48,0:48:99:0,135,1535 0/0:30,0:30:75.18:0,75,871 0/0:41,0:41:99:0,111,1311 11 120175749 . A G 43325.19 . AC=44;AF=0.524;AN=84;BaseQRankSum=-17.515;DP=3148;Dels=0.00;FS=21.724;HRun=0;HaplotypeScore=1.9152;InbreedingCoeff=0.2364;MQ=57.98;MQ0=0;MQRankSum=2.823;QD=20.49;ReadPosRankSum=-0.374 GT:AD:DP:GQ:PL 0/0:48,1:49:99:0,126,1542 0/0:67,0:68:99:0,162,2005 0/0:53,1:54:99:0,141,1700 0/0:154,2:157:99:0,367,4601 0/1:72,73:145:99:1912,0,2010 1/1:0,93:93:99:2886,244,0 0/1:58,42:100:99:972,0,1624 1/1:0,107:107:99:3148,265,0 0/1:31,31:62:99:704,0,817 0/0:38,0:38:96.25:0,96,1153 0/1:16,25:42:99:630,0,391 0/1:36,20:56:99:410,0,958 0/1:26,29:55:99:626,0,566 0/0:44,0:44:99:0,117,1413 0/0:200,0:202:99:0,496,6048 0/1:26,22:49:99:516,0,733 0/1:27,29:56:99:724,0,769 1/1:0,39:39:99:1154,102,0 1/1:0,114:115:99:3181,292,0 1/1:0,135:135:99:3741,334,0 1/1:1,104:105:99:2747,213,0 1/1:0,52:52:99:1505,135,0 0/0:164,1:166:99:0,412,5150 0/1:31,45:76:99:1275,0,694 0/0:104,0:106:99:0,253,3122 0/1:33,31:64:99:906,0,841 0/1:27,26:53:99:626,0,708 0/0:39,0:39:99:0,108,1303 1/1:0,52:53:99:1387,123,0 1/1:0,48:48:99:1305,120,0 1/1:0,47:47:99:1339,120,0 1/1:0,111:111:99:3254,286,0 1/1:0,58:58:99:1667,150,0 0/0:41,0:41:99:0,108,1319 0/1:31,11:43:99:202,0,881 0/1:33,33:66:99:738,0,956 1/1:0,101:101:99:2891,265,0 0/1:26,26:53:99:647,0,705 1/1:2,55:58:86.65:1542,87,0 0/0:67,0:69:99:0,162,2005 0/1:24,8:33:99:161,0,639 0/1:17,22:39:99:529,0,503 11 120776001 . G A 237357.72 . 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C G 51.71 . 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C T 145566.59 . 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T A 37992.12 . 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T G 109.38 . 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G A 28704.97 . 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A G 56257.70 . 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C G 2565.76 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.986;DP=4692;DS;Dels=0.00;FS=17.143;HRun=1;HaplotypeScore=1.6416;InbreedingCoeff=-0.0244;MQ=59.60;MQ0=0;MQRankSum=-0.620;QD=14.58;ReadPosRankSum=-0.493 GT:AD:DP:GQ:PL 0/0:103,0:103:99:0,292,3727 0/0:105,0:105:99:0,286,3692 0/0:107,0:107:99:0,280,3613 0/0:109,0:109:99:0,295,3997 0/0:119,0:119:99:0,316,4332 0/0:92,0:92:99:0,259,3542 0/1:45,41:86:99:1281,0,1508 0/0:75,0:75:99:0,196,2706 0/0:98,0:98:99:0,250,3273 0/1:40,50:90:99:1347,0,1124 0/0:113,0:113:99:0,304,3904 0/0:110,0:110:99:0,280,3607 0/0:107,0:107:99:0,256,3397 0/0:108,0:108:99:0,289,3740 0/0:241,0:241:99:0,665,8581 0/0:70,0:70:99:0,202,2536 0/0:109,0:110:99:0,295,3747 0/0:114,0:114:99:0,313,3995 0/0:156,0:157:99:0,409,5280 0/0:174,0:175:99:0,433,5699 0/0:154,0:155:99:0,400,5137 0/0:104,0:104:99:0,268,3450 0/0:104,0:105:99:0,280,3882 0/0:88,0:88:99:0,244,3347 0/0:94,0:94:99:0,244,3367 0/0:94,0:94:99:0,256,3488 0/0:88,0:88:99:0,223,2855 0/0:108,0:108:99:0,298,3747 0/0:100,0:100:99:0,283,3524 0/0:92,0:92:99:0,250,3175 0/0:88,0:88:99:0,244,3121 0/0:176,0:176:99:0,445,5875 0/0:108,0:108:99:0,292,3786 0/0:111,0:111:99:0,292,3789 0/0:100,1:101:99:0,241,3495 0/0:113,0:114:99:0,304,3922 0/0:164,0:164:99:0,412,5321 0/0:103,0:103:99:0,283,3608 0/0:96,1:97:99:0,280,3576 0/0:105,0:105:99:0,280,3580 0/0:84,0:84:99:0,229,2924 0/0:124,0:124:99:0,355,4555 11 122742050 . T C 13264.81 . AC=13;AF=0.155;AN=84;BaseQRankSum=-20.565;DP=3456;DS;Dels=0.00;FS=0.734;HRun=0;HaplotypeScore=1.0110;InbreedingCoeff=0.1809;MQ=59.51;MQ0=0;MQRankSum=-1.977;QD=16.08;ReadPosRankSum=-1.333 GT:AD:DP:GQ:PL 0/0:80,0:80:99:0,235,2847 0/1:29,41:70:99:1125,0,807 0/1:47,32:79:99:752,0,1420 0/0:65,0:65:99:0,193,2361 0/1:43,54:97:99:1590,0,1227 0/0:65,0:65:99:0,190,2422 0/0:59,0:59:99:0,175,2179 0/0:59,0:59:99:0,169,2089 0/0:80,0:80:99:0,232,2792 0/0:66,0:66:99:0,190,2282 0/0:77,0:77:99:0,220,2698 0/0:67,0:67:99:0,196,2391 0/0:68,0:68:99:0,184,2275 0/0:87,0:87:99:0,244,3011 0/0:232,0:234:99:0,647,7861 0/0:53,0:53:99:0,156,1897 0/0:83,0:83:99:0,232,2829 0/0:89,0:89:99:0,262,3160 0/0:123,0:123:99:0,349,4257 0/0:112,0:113:99:0,307,3808 0/0:114,0:115:99:0,316,3862 0/0:66,0:66:99:0,172,2115 0/1:33,37:70:99:1139,0,928 0/0:70,0:70:99:0,205,2535 0/0:66,0:66:99:0,190,2347 0/0:60,0:60:99:0,172,2087 1/1:0,70:71:99:2191,196,0 0/1:39,46:85:99:1167,0,1108 0/1:35,29:64:99:732,0,1057 0/1:44,33:77:99:839,0,1351 0/1:40,24:64:99:617,0,1210 0/0:130,0:131:99:0,352,4329 1/1:0,64:64:99:2058,183,0 0/0:72,0:72:99:0,214,2604 0/0:71,0:71:99:0,211,2540 0/0:81,0:81:99:0,232,2842 0/0:109,0:109:99:0,301,3681 0/1:40,44:84:99:1055,0,1148 0/0:78,0:78:99:0,226,2758 0/0:81,0:81:99:0,232,2827 0/0:76,0:76:99:0,217,2603 0/0:86,0:86:99:0,253,3067 11 122795688 . T C 49742.50 . AC=30;AF=0.357;AN=84;BaseQRankSum=45.908;DP=4115;DS;Dels=0.00;FS=0.627;HRun=0;HaplotypeScore=1.1645;InbreedingCoeff=-0.0370;MQ=59.57;MQ0=0;MQRankSum=-0.409;QD=19.15;ReadPosRankSum=-0.208 GT:AD:DP:GQ:PL 0/1:50,47:97:99:1413,0,1398 0/1:34,38:73:99:1195,0,953 0/1:37,36:73:99:1165,0,1053 0/0:162,0:162:99:0,463,5456 0/1:81,77:158:99:2436,0,2215 1/1:0,122:122:99:4704,340,0 0/1:62,56:118:99:1811,0,1776 0/1:66,69:135:99:2271,0,1775 0/1:40,45:85:99:1377,0,1114 0/0:82,0:82:99:0,220,2579 0/1:29,34:63:99:1083,0,799 0/0:68,1:69:99:0,156,2189 0/0:92,0:92:99:0,253,3026 0/0:77,0:77:99:0,220,2620 0/1:130,111:241:99:3158,0,3483 0/1:39,29:68:99:910,0,1118 0/1:43,46:89:99:1339,0,1241 0/0:75,1:76:99:0,179,2472 0/1:53,60:113:99:1802,0,1515 0/1:62,48:110:99:1367,0,1737 0/1:71,42:113:99:1209,0,2016 1/1:1,77:78:99:2561,173,0 0/0:155,0:155:99:0,436,5183 0/1:54,55:109:99:1707,0,1407 1/1:0,140:140:99:5288,379,0 0/0:115,0:116:99:0,307,3735 0/0:77,0:77:99:0,211,2536 0/0:69,1:70:99:0,169,2355 0/0:78,0:78:99:0,214,2508 0/0:77,0:77:99:0,211,2491 0/0:60,0:60:99:0,178,2100 0/0:87,0:87:99:0,229,2789 0/0:71,0:71:99:0,205,2416 0/1:38,34:72:99:1048,0,1043 0/1:48,31:79:99:919,0,1401 0/0:85,0:85:99:0,226,2716 1/1:0,117:117:99:4139,325,0 0/1:55,49:104:99:1383,0,1516 1/1:0,72:73:99:2686,211,0 0/0:84,0:84:99:0,244,2887 0/1:29,47:76:99:1508,0,730 0/1:50,41:91:99:1264,0,1400 11 122928622 . A G 32328.98 . AC=20;AF=0.238;AN=84;BaseQRankSum=12.096;DP=4143;DS;Dels=0.00;FS=2.496;HRun=1;HaplotypeScore=1.3440;InbreedingCoeff=0.2125;MQ=58.26;MQ0=2;MQRankSum=12.760;QD=19.75;ReadPosRankSum=1.368 GT:AD:DP:GQ:PL 0/1:35,24:59:99:649,0,1063 0/0:59,0:59:99:0,169,2112 0/0:64,0:64:99:0,190,2353 0/0:174,0:174:99:0,500,6380 0/1:75,55:130:99:1788,0,2434 0/0:145,0:145:99:0,403,5363 0/1:63,65:128:99:2130,0,1900 0/0:153,0:153:99:0,433,5643 0/0:85,0:85:99:0,241,3022 0/0:92,0:92:99:0,268,3374 0/0:68,0:68:99:0,202,2518 0/1:38,32:70:99:936,0,1194 0/0:60,0:60:99:0,175,2189 1/1:0,66:66:99:2422,193,0 0/1:100,108:208:99:2992,0,2883 0/0:73,0:73:99:0,214,2658 0/1:30,46:76:99:1455,0,878 0/1:33,31:64:99:868,0,1031 0/1:77,59:136:99:1676,0,2346 0/0:163,0:164:99:0,445,5603 0/0:151,0:151:99:0,394,5042 0/0:77,0:77:99:0,214,2686 0/0:177,0:177:99:0,497,6512 1/1:0,125:125:99:4691,352,0 1/1:0,139:139:99:5074,379,0 0/1:59,57:116:99:1761,0,1777 0/0:65,0:65:99:0,190,2381 0/0:63,0:63:99:0,181,2258 0/0:60,0:60:99:0,169,2130 0/0:67,0:67:99:0,184,2285 0/0:65,0:65:99:0,193,2394 0/0:132,1:133:99:0,334,4666 0/0:76,0:76:99:0,217,2720 0/0:86,0:86:99:0,247,3117 0/0:67,0:67:99:0,202,2531 0/0:95,0:95:99:0,271,3421 0/0:108,0:108:99:0,310,3910 0/0:78,1:79:99:0,188,2720 0/1:40,35:75:99:1042,0,1192 0/1:37,41:78:99:1249,0,1124 1/1:2,69:71:99:2508,137,0 0/1:57,38:96:99:1087,0,1696 11 122955402 . C T 635.04 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.586;DP=2571;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.0197;InbreedingCoeff=-0.0120;MQ=59.44;MQ0=0;MQRankSum=-0.255;QD=13.51;ReadPosRankSum=0.724 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,162,1875 0/0:52,0:52:99:0,138,1622 0/0:39,0:39:99:0,105,1234 0/0:86,0:86:99:0,229,2820 0/0:61,0:61:99:0,166,2071 0/0:74,0:74:99:0,184,2362 0/1:25,22:47:99:681,0,737 0/0:75,0:75:99:0,202,2508 0/0:51,0:51:99:0,135,1579 0/0:56,0:56:99:0,138,1612 0/0:56,0:56:99:0,153,1795 0/0:60,0:60:99:0,162,1879 0/0:49,0:49:99:0,135,1572 0/0:71,0:71:99:0,196,2262 0/0:175,0:175:99:0,448,5337 0/0:47,0:47:99:0,135,1541 0/0:66,0:66:99:0,187,2114 0/0:52,0:52:99:0,147,1661 0/0:83,0:83:99:0,226,2610 0/0:97,0:97:99:0,238,2881 0/0:85,0:85:99:0,220,2633 0/0:45,0:45:99:0,123,1444 0/0:90,0:90:99:0,229,2928 0/0:44,0:44:99:0,117,1508 0/0:53,0:53:99:0,135,1750 0/0:53,0:53:99:0,138,1782 0/0:34,0:34:90.26:0,90,1074 0/0:42,0:42:99:0,111,1279 0/0:41,0:41:99:0,108,1255 0/0:41,0:41:99:0,117,1341 0/0:40,1:41:99:0,102,1204 0/0:65,0:65:99:0,177,2080 0/0:62,0:62:99:0,165,1924 0/0:60,0:60:99:0,168,1929 0/0:59,0:59:99:0,162,1912 0/0:55,0:55:99:0,135,1613 0/0:79,0:79:99:0,193,2348 0/0:56,0:56:99:0,147,1735 0/0:41,0:41:99:0,111,1284 0/0:72,0:72:99:0,199,2280 0/0:43,0:43:99:0,117,1351 0/0:52,1:53:99:0,119,1627 11 123480598 . A C 123.44 . AC=9;AF=0.107;AN=84;BaseQRankSum=-12.812;DP=614;Dels=0.00;FS=77.967;HRun=1;HaplotypeScore=1.8210;InbreedingCoeff=-0.1461;MQ=60.02;MQ0=0;MQRankSum=-1.940;QD=1.01;ReadPosRankSum=-5.258 GT:AD:DP:GQ:PL 0/0:8,4:12:1.35:0,1,209 0/0:16,1:17:42.10:0,42,480 0/0:10,5:15:1.36:4,0,255 0/0:3,1:4:9.02:0,9,101 0/0:9,0:9:24.06:0,24,277 0/0:5,2:7:15.01:0,15,169 0/0:6,1:7:15.05:0,15,190 0/0:7,0:7:21.06:0,21,243 0/0:10,6:16:30.06:0,30,341 0/0:7,6:13:12.03:0,12,141 0/0:11,2:13:33.10:0,33,392 0/1:1,2:3:19.68:26,0,20 0/1:5,2:7:20.93:21,0,92 0/1:6,5:11:37.96:38,0,182 0/0:54,6:60:99:0,119,1666 0/0:1,8:9:3.01:0,3,37 0/0:8,3:11:18.05:0,18,225 0/1:8,4:12:9.54:10,0,182 0/0:19,4:23:51.14:0,51,614 0/0:21,1:22:57.13:0,57,663 0/0:13,3:16:36.10:0,36,408 0/1:14,14:28:37.04:37,0,342 0/0:14,0:14:30.09:0,30,363 0/0:11,0:11:33.05:0,33,360 0/0:9,0:9:18.05:0,18,215 0/0:9,1:10:21.06:0,21,254 0/1:5,4:9:29.31:29,0,151 0/0:5,5:10:15.04:0,15,177 0/1:7,4:11:30.75:31,0,208 0/0:10,1:11:27.08:0,27,327 0/0:13,6:20:9.48:0,9,395 0/0:23,7:30:37.43:0,37,655 0/1:17,8:25:29.19:29,0,489 0/0:6,3:9:15.04:0,15,179 0/1:8,8:16:25.23:25,0,251 0/0:10,2:12:27.08:0,27,315 0/0:27,1:28:72.21:0,72,857 0/0:8,5:13:23.26:0,23,228 0/0:7,9:16:21.06:0,21,243 0/0:11,7:18:33.09:0,33,398 0/0:9,0:9:24.07:0,24,279 0/0:8,3:11:21.05:0,21,244 11 123480598 . A AC 555.70 . AC=24;AF=0.286;AN=84;BaseQRankSum=-3.775;DP=660;FS=411.122;HRun=1;HaplotypeScore=50.6988;InbreedingCoeff=-0.4124;MQ=60.54;MQ0=0;MQRankSum=6.803;QD=1.31;ReadPosRankSum=-14.853 GT:AD:DP:GQ:PL 0/1:14,0:14:2.78:3,0,209 0/1:13,4:17:6.87:7,0,393 0/1:15,0:15:35.71:36,0,284 0/0:4,2:6:4.98:0,5,91 0/1:6,4:10:16.84:17,0,191 0/1:7,1:8:3.01:0,0,121 0/0:6,1:7:9.07:0,9,207 0/1:4,7:11:26.93:27,0,136 0/0:16,0:16:26:0,26,347 0/0:12,0:12:17.05:0,17,237 0/0:13,0:13:20.09:0,20,387 0/1:3,0:3:20.91:21,0,33 0/1:7,0:7:40.70:41,0,138 0/1:11,0:11:48.24:48,0,235 0/1:47,22:69:86.98:87,0,1249 0/1:10,0:10:14.81:15,0,54 0/0:12,0:12:4.03:0,4,224 0/0:13,0:13:13.43:0,13,226 0/1:18,8:26:25.80:26,0,575 0/1:19,8:27:8.55:9,0,556 0/1:11,8:19:71.68:72,0,364 0/1:28,0:28:48.41:48,0,401 0/1:6,12:18:11.72:12,0,134 0/0:9,5:14:8.93:0,9,286 0/0:6,5:9:0.06:0,0,139 0/1:5,5:9:33.09:33,0,90 0/1:9,0:9:4.02:4,0,211 0/0:10,0:10:4.08:0,4,144 0/1:12,0:12:15.80:16,0,291 0/0:10,4:14:2.51:0,3,245 0/1:18,0:18:3.78:4,0,333 0/0:27,2:29:35.66:0,36,674 0/1:25,0:25:31.42:31,0,577 0/0:9,0:9:12.12:0,12,190 0/1:16,0:16:38.76:39,0,229 0/0:11,0:11:24.07:0,24,294 0/1:24,5:29:84.10:84,0,623 0/0:14,0:14:4.17:0,4,292 0/0:17,0:17:9.58:0,10,245 0/0:18,0:18:37.99:0,38,482 0/1:4,7:11:43.95:44,0,132 0/0:11,0:11:24.07:0,24,294 11 123480981 . T C 20174.12 . AC=16;AF=0.190;AN=84;BaseQRankSum=14.120;DP=3522;Dels=0.00;FS=21.561;HRun=0;HaplotypeScore=2.1594;InbreedingCoeff=-0.0809;MQ=59.17;MQ0=0;MQRankSum=0.090;QD=15.63;ReadPosRankSum=-0.537 GT:AD:DP:GQ:PL 0/1:39,39:78:99:1002,0,1090 0/0:67,0:67:99:0,187,2246 0/1:29,24:53:99:680,0,813 0/1:67,76:143:99:2280,0,1945 0/1:73,58:131:99:1815,0,2115 0/1:57,43:100:99:1229,0,1670 0/0:99,0:100:99:0,274,3346 0/1:54,38:92:99:1153,0,1567 0/0:63,0:63:99:0,184,2153 0/0:61,1:62:99:0,145,1959 0/0:64,0:65:99:0,178,2161 0/1:36,35:71:99:953,0,938 0/0:56,0:57:99:0,159,1900 0/1:23,37:60:99:1076,0,594 0/0:224,0:224:99:0,611,7263 0/0:57,0:57:99:0,159,1905 0/0:76,0:76:99:0,208,2508 0/0:63,0:63:99:0,172,2063 0/0:103,0:103:99:0,286,3435 0/0:131,0:131:99:0,349,4220 0/0:123,0:123:99:0,343,4128 0/1:43,31:75:99:691,0,1209 1/1:1,128:130:99:4723,330,0 0/1:27,34:61:99:1017,0,789 0/1:62,39:102:99:1091,0,1806 0/0:79,0:79:99:0,232,2795 0/0:61,0:61:99:0,165,1982 0/0:60,0:60:99:0,172,2043 0/0:54,0:54:99:0,156,1844 0/0:65,0:65:99:0,162,1977 0/0:65,0:65:99:0,184,2201 0/0:139,0:139:99:0,346,4300 0/0:83,0:83:99:0,235,2730 0/0:56,0:56:99:0,156,1892 0/0:54,0:54:99:0,150,1807 0/1:44,25:69:99:687,0,1242 0/0:137,0:137:99:0,370,4468 0/1:35,36:71:99:1004,0,911 0/1:27,28:55:99:774,0,768 0/0:62,0:62:99:0,178,2139 0/0:52,0:52:99:0,144,1716 0/0:73,0:73:99:0,205,2472 11 123513161 . G A 11317.25 . 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GTGGCCTT G 58.26 . AC=5;AF=0.060;AN=84;BaseQRankSum=1.572;DP=911;FS=145.159;HRun=0;HaplotypeScore=134.1728;InbreedingCoeff=-0.0776;MQ=58.15;MQ0=0;MQRankSum=1.926;QD=0.65;ReadPosRankSum=-6.723 GT:AD:DP:GQ:PL 0/0:14,0:14:27.08:0,27,1008 0/0:13,0:13:26.11:0,26,932 0/0:15,0:15:24.07:0,24,825 0/0:44,0:44:86.35:0,86,3209 0/0:30,16:46:57.27:0,57,2932 0/0:23,0:22:59.69:0,60,2310 0/0:33,0:32:75.16:0,75,2855 0/0:25,0:25:50.26:0,50,1987 0/1:15,0:15:12.69:13,0,915 0/1:9,0:8:39.53:40,0,322 0/0:10,0:10:27.09:0,27,1058 0/0:19,0:19:20.30:0,20,1507 0/0:18,0:18:10.31:0,10,1161 0/0:18,0:18:42.14:0,42,1555 0/0:62,0:62:48.83:0,49,4487 0/0:11,0:11:27.09:0,27,1048 0/0:17,0:17:15.18:0,15,1233 0/0:18,0:18:42.03:0,42,1343 0/1:29,0:29:60.27:60,0,1900 0/0:36,0:36:87.29:0,87,3376 0/0:27,0:27:16.17:0,16,1358 0/0:23,0:23:54.18:0,54,2072 0/0:50,0:50:75.44:0,75,3362 0/0:23,0:23:36.30:0,36,1903 0/0:35,0:34:69.31:0,69,3328 0/1:20,7:27:31.23:31,0,1954 0/0:11,0:11:24.08:0,24,958 0/0:20,0:20:57.18:0,57,2065 0/0:9,0:8:0.36:11,0,515 0/0:12,0:12:29.27:0,29,891 0/0:15,0:15:36.12:0,36,1361 0/0:27,0:27:61.08:0,61,2213 0/0:27,0:27:28.20:0,28,1711 0/0:12,0:12:32.90:0,33,1128 0/0:8,0:8:18:0,18,512 0/0:27,0:27:32.01:0,32,1525 0/1:10,0:10:12.88:13,0,641 0/0:10,0:10:18.05:0,18,639 0/0:12,0:12:30.10:0,30,1129 0/0:13,0:13:36.12:0,36,1304 0/0:17,0:17:45.15:0,45,1688 0/0:21,0:21:15.28:0,15,1623 11 124745490 . T G 149.49 . AC=9;AF=0.107;AN=84;BaseQRankSum=-12.487;DP=911;Dels=0.03;FS=157.733;HRun=2;HaplotypeScore=5.6423;InbreedingCoeff=-0.1505;MQ=58.15;MQ0=0;MQRankSum=-2.080;QD=0.75;ReadPosRankSum=-3.193 GT:AD:DP:GQ:PL 0/0:9,5:14:27.07:0,27,314 0/0:6,7:13:18.05:0,18,206 0/0:7,8:15:21.05:0,21,229 0/0:25,18:44:30.82:0,31,782 0/0:23,7:30:38.51:0,39,724 0/0:16,7:23:48.15:0,48,599 0/0:23,10:33:63.19:0,63,760 0/0:18,7:25:45.13:0,45,525 0/1:8,7:15:25.22:25,0,206 0/1:3,6:9:57.21:73,0,57 0/0:9,0:10:24.06:0,24,281 0/1:13,6:19:18.10:18,0,369 0/0:10,8:18:2.50:0,3,319 0/0:13,5:18:9.43:0,9,382 0/1:36,26:62:9.96:10,0,1024 0/0:9,2:11:24.07:0,24,291 0/0:11,6:17:7.40:0,7,332 0/0:12,6:18:30.07:0,30,338 0/1:14,15:29:78.79:79,0,415 0/0:27,9:36:75.19:0,75,872 0/0:17,10:27:17.45:0,17,449 0/0:17,6:23:51.13:0,51,577 0/0:29,21:50:54.76:0,55,971 0/0:13,10:23:15.41:0,15,408 0/1:24,11:35:8.68:9,0,703 0/0:15,4:20:18.49:0,18,500 0/0:8,3:11:24.07:0,24,279 0/0:17,3:20:30.44:0,30,572 0/1:4,5:9:15.64:16,0,88 0/0:10,2:12:1.38:4,0,281 0/0:10,5:15:2.50:0,2,330 0/0:17,10:27:17.39:0,17,411 0/0:18,8:27:20.39:0,20,443 0/1:8,4:12:13.29:13,0,251 0/0:5,3:8:12.03:0,12,135 0/0:16,10:27:39.11:0,39,459 0/1:5,5:10:25.33:25,0,155 0/0:7,3:10:18.06:0,18,218 0/0:8,3:12:24.07:0,24,283 0/0:8,5:13:5.39:0,5,270 0/0:13,4:17:39.11:0,39,452 0/0:15,6:21:7.29:0,7,437 11 124755041 . A G 56.08 . AC=1;AF=0.012;AN=84;BaseQRankSum=-11.623;DP=2357;Dels=0.00;FS=122.625;HRun=1;HaplotypeScore=2.0393;InbreedingCoeff=-0.0121;MQ=58.94;MQ0=1;MQRankSum=0.296;QD=0.90;ReadPosRankSum=-6.649 GT:AD:DP:GQ:PL 0/0:23,2:26:63.12:0,63,689 0/0:29,7:38:48.48:0,48,752 0/0:21,1:23:60.13:0,60,657 0/0:118,24:154:99:0,231,2945 0/0:91,21:120:99:0,138,2321 0/0:86,5:98:99:0,210,2243 0/0:58,9:70:99:0,132,1443 0/0:74,4:80:99:0,164,2001 0/0:32,1:33:78.16:0,78,837 0/0:23,1:27:66.17:0,66,732 0/0:27,7:34:43.44:0,43,672 0/0:29,6:38:51.49:0,51,783 0/0:27,5:33:75.15:0,75,826 0/0:37,2:40:84.15:0,84,908 0/0:84,15:106:99:0,129,2141 0/0:26,2:28:72.12:0,72,757 0/0:37,5:43:99:0,102,1104 0/0:31,0:35:72.10:0,72,771 0/1:47,13:62:99:102,0,947 0/0:79,5:91:99:0,180,1889 0/0:55,15:77:60.40:0,60,1431 0/0:42,9:53:79.29:0,79,1074 0/0:102,24:130:99:0,218,2590 0/0:66,12:82:75.34:0,75,1501 0/0:79,11:94:99:0,172,2054 0/0:55,7:65:99:0,144,1531 0/0:25,9:37:69.08:0,69,723 0/0:22,5:31:60.10:0,60,638 0/0:28,5:33:44.50:0,44,720 0/0:34,2:37:63.41:0,63,851 0/0:28,6:35:66.13:0,66,723 0/0:64,7:77:99:0,125,1547 0/0:54,3:57:99:0,132,1408 0/0:26,2:30:46.47:0,46,703 0/0:29,3:33:69.14:0,69,756 0/0:38,6:44:50.42:0,50,1078 0/0:44,5:56:56.89:0,57,1056 0/0:31,5:39:75.14:0,75,799 0/0:38,5:45:46.90:0,47,971 0/0:31,5:36:81.15:0,81,850 0/0:37,1:40:99:0,99,1058 0/0:37,7:47:90.17:0,90,961 11 124757698 . T TG 137.82 . AC=9;AF=0.107;AN=84;BaseQRankSum=-0.345;DP=1525;FS=1103.433;HRun=1;HaplotypeScore=98.5038;InbreedingCoeff=-0.1521;MQ=59.52;MQ0=0;MQRankSum=2.410;QD=0.47;ReadPosRankSum=-14.627 GT:AD:DP:GQ:PL 0/0:25,0:25:44.16:0,44,745 0/0:30,0:30:50.24:0,50,749 0/0:21,0:21:17.38:0,17,524 0/0:68,24:92:96.67:0,97,2104 0/0:66,0:66:49.38:0,49,1607 0/0:43,11:51:46.63:0,47,1302 0/0:37,0:35:43.05:0,43,871 0/0:58,0:57:50.62:0,51,1242 0/0:24,0:24:28.04:0,28,571 0/1:24,0:24:24.04:24,0,469 0/0:25,0:25:8.26:0,8,608 0/1:26,0:26:32.64:33,0,416 0/0:13,0:13:21.13:0,21,372 0/0:17,0:17:24.13:0,24,326 0/0:57,25:82:37.74:0,38,1661 0/0:16,0:16:37.35:0,37,508 0/1:32,1:33:40.50:41,0,574 0/0:12,0:12:26.76:0,27,322 0/1:60,0:60:46.44:46,0,1344 0/0:54,0:53:32.77:0,33,1143 0/1:27,9:36:13.64:14,0,830 0/0:28,0:28:29:0,29,715 0/0:90,1:91:99:0,123,2335 0/0:37,12:48:24.97:0,25,959 0/0:63,0:62:51.60:0,52,1484 0/0:71,0:70:99:0,112,1813 0/0:13,0:13:29.83:0,30,362 0/1:29,0:29:15.87:16,0,628 0/0:19,0:19:0.87:7,0,452 0/0:31,0:31:2.51:1,0,504 0/0:19,0:19:7.03:0,7,369 0/0:30,0:30:38.18:0,38,713 0/0:28,0:28:35.27:0,35,570 0/0:26,0:26:44.15:0,44,767 0/0:31,0:31:70.15:0,70,1007 0/0:24,0:24:2.66:1,0,673 0/0:34,0:34:52.95:0,53,919 0/1:37,0:37:31.07:31,0,760 0/1:28,0:28:52.45:52,0,616 0/0:29,0:29:19.25:0,19,675 0/0:18,0:18:33.95:0,34,445 0/1:22,0:22:9.14:9,0,517 11 124757700 . C G 66.04 . AC=4;AF=0.048;AN=84;BaseQRankSum=-15.553;DP=1455;Dels=0.00;FS=477.101;HRun=1;HaplotypeScore=1.7629;InbreedingCoeff=-0.0803;MQ=59.22;MQ0=0;MQRankSum=0.898;QD=0.59;ReadPosRankSum=-12.592 GT:AD:DP:GQ:PL 0/0:24,1:25:60.01:0,60,718 0/0:23,7:30:60.14:0,60,712 0/0:18,4:22:45.01:0,45,499 0/0:75,2:77:99:0,169,2246 0/0:50,17:67:72.39:0,72,1730 0/0:47,1:48:99:0,114,1445 0/0:25,11:36:69.21:0,69,902 0/0:42,15:57:66.01:0,66,1289 0/0:17,7:24:20.42:0,20,484 0/1:15,8:24:44.47:44,0,380 0/0:20,4:24:1.91:0,2,643 0/1:13,11:25:46.44:46,0,406 0/0:10,2:12:30.09:0,30,369 0/0:13,4:17:27.06:0,27,331 0/0:67,4:71:99:0,123,1848 0/0:14,1:15:39.12:0,39,493 0/0:23,11:34:26.36:0,26,621 0/0:10,1:11:24.08:0,24,309 0/0:43,14:57:3.38:0,3,1157 0/0:42,11:53:71.80:0,72,1195 0/0:31,3:34:78.17:0,78,908 0/0:22,3:25:35.48:0,35,700 0/0:69,20:89:99:0,138,2361 0/0:42,0:42:84.27:0,84,1120 0/0:46,16:62:96.20:0,96,1462 0/0:51,16:67:91.73:0,92,1820 0/0:9,4:13:4.40:0,4,311 0/0:19,9:28:20.57:0,21,575 0/0:13,6:19:3.51:0,4,423 0/0:21,9:30:15:0,15,454 0/0:14,5:19:13.40:0,13,371 0/0:21,7:28:57.17:0,57,716 0/0:17,8:26:45.14:0,45,563 0/0:20,5:25:56.80:0,57,633 0/0:27,3:30:48.55:0,49,898 0/0:19,5:24:29.98:0,30,601 0/0:26,8:34:70.10:0,70,858 0/1:26,9:35:13.09:13,0,699 0/1:20,8:28:42.93:43,0,613 0/0:21,8:29:31.48:0,31,651 0/0:14,3:17:33.08:0,33,397 0/0:17,5:22:0.43:10,0,515 11 124908352 . T C 2252.06 . AC=15;AF=0.179;AN=84;BaseQRankSum=2.475;DP=660;Dels=0.00;FS=7.302;HRun=0;HaplotypeScore=0.0781;InbreedingCoeff=-0.2186;MQ=58.97;MQ0=0;MQRankSum=0.971;QD=12.37;ReadPosRankSum=-1.194 GT:AD:DP:GQ:PL 0/0:23,0:23:60.18:0,60,740 0/1:5,7:12:84.53:199,0,85 0/1:6,5:11:99:151,0,159 0/0:20,0:20:48.15:0,48,609 0/1:12,2:14:31.85:32,0,355 0/0:15,0:15:39.13:0,39,513 0/0:20,0:20:45.15:0,45,601 0/0:10,0:10:27.08:0,27,338 0/0:17,0:17:45.14:0,45,554 0/0:12,0:12:36.11:0,36,422 0/0:16,0:16:45.14:0,45,546 0/1:4,8:12:99:230,0,115 0/1:5,5:10:99:160,0,154 0/0:5,0:5:15.04:0,15,169 0/0:54,0:54:99:0,135,1672 0/0:8,0:8:21.07:0,21,261 0/0:13,0:13:36.11:0,36,436 0/0:13,0:13:39.12:0,39,466 0/0:26,0:26:63.20:0,63,797 0/0:38,0:38:87.28:0,87,1129 0/0:25,0:25:63.19:0,63,785 0/1:8,3:11:55.46:55,0,235 0/1:7,9:16:99:202,0,166 0/0:19,0:19:39.13:0,39,537 0/0:8,0:8:24.07:0,24,293 0/0:19,0:19:45.14:0,45,578 0/1:8,8:16:99:248,0,216 0/1:9,5:14:99:134,0,250 0/0:15,0:15:42.13:0,42,509 0/0:11,0:11:33.10:0,33,389 0/0:8,0:8:21.06:0,21,260 0/0:20,0:20:51.16:0,51,640 0/1:5,6:11:99:188,0,122 0/0:6,0:6:18.05:0,18,213 0/1:2,5:7:54.20:138,0,54 0/0:14,0:14:42.13:0,42,501 0/0:26,0:26:66.21:0,66,830 0/1:8,4:12:99:116,0,227 0/0:17,0:17:48.15:0,48,580 0/1:3,9:12:72.59:261,0,73 0/1:11,3:14:72.64:73,0,324 0/1:2,8:10:46.03:224,0,46 11 124946723 . A G 1276.21 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.751;DP=2592;Dels=0.00;FS=3.826;HRun=1;HaplotypeScore=1.5625;InbreedingCoeff=-0.0244;MQ=59.15;MQ0=0;MQRankSum=0.399;QD=14.02;ReadPosRankSum=0.064 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,156,1961 0/0:62,0:62:99:0,175,2166 0/0:60,0:60:99:0,144,1864 0/0:97,0:97:99:0,259,3312 0/0:79,0:79:99:0,214,2792 0/0:71,0:72:99:0,187,2463 0/0:50,0:50:99:0,129,1699 0/0:63,0:63:99:0,184,2349 0/1:21,22:43:99:639,0,539 0/0:46,0:46:99:0,129,1589 0/1:22,26:48:99:700,0,612 0/0:49,0:49:99:0,138,1744 0/0:39,0:41:96.30:0,96,1237 0/0:58,0:58:99:0,166,2040 0/0:174,0:174:99:0,433,5500 0/0:41,0:41:99:0,114,1437 0/0:55,0:55:99:0,150,1871 0/0:47,0:47:99:0,135,1692 0/0:85,0:85:99:0,211,2710 0/0:102,0:102:99:0,262,3323 0/0:86,0:86:99:0,226,2849 0/0:50,0:50:99:0,138,1714 0/0:74,0:74:99:0,208,2659 0/0:60,0:60:99:0,169,2185 0/0:72,0:72:99:0,196,2531 0/0:55,0:55:99:0,147,1938 0/0:53,0:53:99:0,147,1856 0/0:58,0:58:99:0,156,1957 0/0:43,0:43:99:0,120,1503 0/0:48,0:48:99:0,135,1704 0/0:59,0:59:99:0,156,2002 0/0:77,0:77:99:0,196,2477 0/0:47,0:47:99:0,126,1606 0/0:53,0:53:99:0,141,1808 0/0:40,0:40:99:0,105,1317 0/0:59,0:59:99:0,160,2029 0/0:71,0:71:99:0,187,2333 0/0:64,0:64:99:0,166,2083 0/0:53,0:53:99:0,135,1733 0/0:49,0:49:99:0,129,1604 0/0:41,0:41:99:0,114,1431 0/0:49,0:49:99:0,138,1746 11 124947396 . A G 21472.86 . AC=29;AF=0.345;AN=84;BaseQRankSum=2.478;DP=2161;Dels=0.00;FS=0.364;HRun=0;HaplotypeScore=1.1846;InbreedingCoeff=0.2100;MQ=59.28;MQ0=0;MQRankSum=2.016;QD=18.45;ReadPosRankSum=0.800 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,138,1621 0/1:23,15:38:99:389,0,585 1/1:0,36:36:99:1114,99,0 0/1:47,40:87:99:1040,0,1274 0/0:52,0:52:99:0,150,1814 0/1:38,37:75:99:993,0,1066 1/1:0,63:63:99:2147,166,0 0/1:39,21:60:99:627,0,1084 0/0:50,0:50:99:0,138,1659 0/1:18,20:38:99:545,0,495 0/0:32,0:32:90.27:0,90,1079 0/1:14,18:32:99:422,0,380 1/1:1,39:40:78.76:1215,79,0 0/1:26,24:50:99:656,0,732 0/1:55,63:119:99:1628,0,1467 0/1:16,15:31:99:367,0,487 0/0:43,0:43:99:0,111,1347 0/0:52,1:53:99:0,107,1672 0/0:64,0:64:99:0,178,2118 0/0:57,0:58:99:0,159,1937 0/0:67,0:67:99:0,171,2046 0/0:46,0:46:99:0,120,1445 1/1:0,88:88:99:2822,217,0 0/0:52,0:52:99:0,135,1698 0/0:54,0:54:99:0,141,1713 0/0:49,0:49:99:0,120,1489 0/0:36,0:36:99:0,99,1192 0/0:38,0:38:99:0,105,1259 0/1:24,13:37:99:342,0,679 0/0:34,0:34:96.26:0,96,1130 0/0:53,0:53:99:0,141,1729 0/0:68,0:68:99:0,175,2131 0/1:26,25:51:99:696,0,680 0/1:26,22:48:99:556,0,727 1/1:2,39:41:39.97:1168,40,0 0/0:36,0:36:90.26:0,90,1074 0/0:63,0:63:99:0,178,2096 0/1:22,18:40:99:458,0,601 0/1:29,27:56:99:738,0,781 1/1:0,54:54:99:1770,147,0 0/1:22,19:41:99:514,0,630 1/1:0,39:39:99:1267,105,0 11 125351472 . A T 47483.81 . AC=26;AF=0.310;AN=84;BaseQRankSum=8.060;DP=6333;DS;Dels=0.00;FS=13.040;HRun=1;HaplotypeScore=3.4234;InbreedingCoeff=-0.1141;MQ=59.53;MQ0=0;MQRankSum=0.494;QD=15.31;ReadPosRankSum=-1.243 GT:AD:DP:GQ:PL 1/1:0,153:155:99:4762,379,0 0/1:66,56:122:99:1538,0,1780 0/0:111,0:111:99:0,295,3550 0/0:230,1:231:99:0,595,7498 0/0:223,0:223:99:0,611,7424 0/0:235,0:235:99:0,605,7609 0/0:209,2:211:99:0,509,6817 0/0:221,0:222:99:0,593,7237 1/1:0,102:102:99:3365,277,0 0/1:55,48:103:99:1283,0,1544 0/1:54,38:92:99:1075,0,1508 0/0:110,1:111:99:0,298,3609 0/1:63,43:106:99:1175,0,1660 0/0:112,0:112:99:0,292,3591 0/1:123,112:237:99:2979,0,3316 0/0:91,0:92:99:0,250,3011 1/1:2,115:117:99:3638,236,0 0/1:65,45:110:99:1167,0,1715 0/1:109,95:206:99:2559,0,2801 0/1:117,106:224:99:2876,0,3109 0/0:235,0:235:99:0,593,7208 0/0:141,0:141:99:0,370,4435 0/1:104,120:224:99:3402,0,2799 0/0:179,0:179:99:0,451,5644 0/1:102,99:201:99:2727,0,2715 0/0:197,0:197:99:0,487,6098 0/1:52,43:95:99:1187,0,1427 0/1:52,58:110:99:1615,0,1458 0/1:51,59:110:99:1723,0,1353 0/1:63,64:127:99:1818,0,1657 0/1:46,44:90:99:1238,0,1206 0/0:240,0:240:99:0,593,7307 0/1:77,76:153:99:2053,0,2078 0/0:105,0:105:99:0,265,3253 0/0:130,2:132:99:0,276,4084 0/1:59,47:107:99:1285,0,1671 0/0:215,0:215:99:0,530,6522 0/0:116,1:117:99:0,310,3711 0/0:122,0:122:99:0,328,3944 0/1:60,49:110:99:1359,0,1570 0/1:46,42:88:99:1155,0,1234 0/1:61,52:113:99:1505,0,1577 11 125448902 . G A 107.16 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.966;DP=690;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2345;InbreedingCoeff=-0.0103;MQ=48.34;MQ0=46;MQRankSum=-1.295;QD=11.91;ReadPosRankSum=1.614 GT:AD:DP:GQ:PL 0/0:14,0:14:30.09:0,30,360 0/0:18,0:18:42.12:0,42,513 0/0:9,0:9:21.07:0,21,267 0/0:31,0:31:72.22:0,72,953 0/0:11,0:11:30.09:0,30,391 0/0:19,0:19:48.16:0,48,653 0/0:13,0:13:33.10:0,33,438 0/0:8,0:8:24.08:0,24,307 0/0:20,0:20:48.13:0,48,590 0/0:8,0:8:24.07:0,24,288 0/0:11,0:11:33.10:0,33,402 0/0:18,0:18:42.14:0,42,552 0/0:10,0:10:21.06:0,21,254 0/0:16,0:16:42.13:0,42,519 0/0:63,0:63:99:0,156,1976 0/0:11,0:11:30.09:0,30,368 0/0:18,0:18:42.12:0,42,494 0/1:4,5:9:56.83:153,0,57 0/0:28,0:28:69.22:0,69,869 0/0:27,0:27:66.20:0,66,802 0/0:19,0:19:54.16:0,54,653 0/0:14,0:14:36.10:0,36,430 0/0:17,0:17:39.13:0,39,520 0/0:19,0:19:42.14:0,42,572 0/0:14,0:14:33.11:0,33,440 0/0:10,0:10:27.09:0,27,368 0/0:8,0:8:18.06:0,18,224 0/0:9,0:9:24.07:0,24,288 0/0:18,0:18:48.14:0,48,581 0/0:17,0:17:39.12:0,39,483 0/0:13,0:13:36.11:0,36,443 0/0:30,0:30:78.23:0,78,965 0/0:19,0:19:54.17:0,54,665 0/0:15,0:15:42.13:0,42,516 0/0:10,0:10:30.09:0,30,373 0/0:13,0:13:30.09:0,30,381 0/0:26,0:27:66.21:0,66,836 0/0:11,0:11:27.08:0,27,331 0/0:15,0:15:39.12:0,39,489 0/0:5,0:5:2.98:0,3,22 0/0:15,0:15:36.11:0,36,458 0/0:10,0:10:30.09:0,30,353 11 125452248 . C G 51.12 . AC=7;AF=0.085;AN=82;BaseQRankSum=-6.375;DP=410;Dels=0.00;FS=14.583;HRun=1;HaplotypeScore=1.0293;InbreedingCoeff=-0.1301;MQ=52.34;MQ0=5;MQRankSum=-1.968;QD=0.79;ReadPosRankSum=0.337 GT:AD:DP:GQ:PL 0/0:14,0:14:18.04:0,18,197 0/1:6,2:8:19.63:20,0,50 0/0:9,2:11:9.03:0,9,116 0/0:4,2:6:9.02:0,9,92 0/0:6,0:6:12.02:0,12,132 0/0:5,1:6:15.04:0,15,171 0/0:9,1:10:21.02:0,21,242 0/0:9,0:9:18.04:0,18,191 0/0:5,2:7:11.99:0,12,104 0/0:6,0:7:6.01:0,6,62 0/1:7,1:8:20.60:21,0,59 0/0:9,2:11:15.03:0,15,169 0/0:7,1:9:12.01:0,12,128 0/0:5,1:6:6.02:0,6,64 0/0:30,9:40:65.96:0,66,750 0/1:1,3:4:18.69:21,0,19 0/0:7,1:8:17.37:0,17,154 0/0:11,3:14:21.06:0,21,237 0/1:9,5:14:34.94:35,0,222 0/0:18,2:20:48.13:0,48,564 0/0:14,1:15:24.06:0,24,278 0/0:5,0:5:3.01:0,3,31 0/0:5,0:5:6.02:0,6,81 0/0:4,1:5:9:0,9,96 0/0:6,0:6:18.05:0,18,219 0/0:7,1:8:9.01:0,9,94 0/0:8,4:12:8.97:0,9,71 0/1:5,1:6:18.68:19,0,23 0/0:8,1:9:9.03:0,9,105 ./. 0/0:5,0:5:6:0,6,60 0/0:18,1:20:48.05:0,48,501 0/0:8,1:9:15.04:0,15,176 0/0:8,1:9:12.03:0,12,126 0/0:7,1:8:15.04:0,15,164 0/0:2,1:3:3.01:0,3,33 0/0:12,2:14:27.05:0,27,283 0/0:8,1:9:14.99:0,15,149 0/1:9,3:12:35.26:35,0,163 0/1:9,4:13:6.83:7,0,128 0/0:7,3:10:9.03:0,9,110 0/0:3,3:6:6:0,6,55 11 125452300 . A AC 27465.84 . AC=84;AF=1.000;AN=84;DP=776;FS=0.000;HRun=3;HaplotypeScore=48.7760;InbreedingCoeff=-0.0006;MQ=55.65;MQ0=2;QD=35.39 GT:AD:DP:GQ:PL 1/1:2,19:17:45.15:630,45,0 1/1:1,23:19:57.19:799,57,0 1/1:4,18:17:42.14:589,42,0 1/1:0,13:13:39.12:521,39,0 1/1:0,14:14:42.14:588,42,0 1/1:1,11:12:33.11:462,33,0 1/1:0,19:19:57.19:797,57,0 1/1:3,14:17:42.13:574,42,0 1/1:0,11:9:27.09:378,27,0 1/1:1,8:7:21.07:293,21,0 1/1:2,10:10:30.10:420,30,0 1/1:2,13:13:36.12:504,36,0 1/1:1,11:10:27.09:378,27,0 1/1:3,8:10:24.08:332,24,0 1/1:1,62:62:99:2540,184,0 1/1:0,9:9:27.09:378,27,0 1/1:1,9:9:27.09:378,27,0 1/1:4,15:17:39.13:546,39,0 1/1:1,25:24:69.22:945,69,0 1/1:0,33:33:99:1369,99,0 1/1:1,25:22:66.22:917,66,0 1/1:0,13:11:33.11:462,33,0 1/1:1,12:13:33.11:462,33,0 1/1:0,12:12:36.12:495,36,0 1/1:1,14:15:42.14:589,42,0 1/1:0,10:9:27.09:378,27,0 1/1:1,11:8:24.08:336,24,0 1/1:1,14:11:33.11:450,33,0 1/1:2,16:15:39.13:546,39,0 1/1:0,8:6:18.06:252,18,0 1/1:1,19:15:42.14:588,42,0 1/1:3,40:41:99:1628,117,0 1/1:0,20:20:60.20:832,60,0 1/1:1,14:13:36.11:483,36,0 1/1:3,15:15:33.11:462,33,0 1/1:0,22:22:66.22:923,66,0 1/1:4,31:34:90.30:1261,90,0 1/1:1,18:17:48.16:671,48,0 1/1:3,19:17:45.15:629,45,0 1/1:1,24:22:63.19:852,63,0 1/1:0,14:13:39.13:546,39,0 1/1:1,8:8:21.06:277,21,0 11 125452313 . A G 7591.35 . AC=30;AF=0.357;AN=84;BaseQRankSum=-5.519;DP=763;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4147;InbreedingCoeff=0.2005;MQ=57.17;MQ0=0;MQRankSum=1.443;QD=20.41;ReadPosRankSum=-1.711 GT:AD:DP:GQ:PL 1/1:0,21:21:51.14:592,51,0 1/1:0,20:20:51.15:617,51,0 0/1:8,12:20:99:298,0,194 0/1:8,5:13:99:130,0,228 1/1:0,19:19:48.15:623,48,0 0/0:12,0:12:30.09:0,30,386 0/0:17,0:17:42.13:0,42,534 0/1:9,9:18:99:265,0,239 0/1:4,6:10:80.75:150,0,81 0/1:2,5:7:42.74:148,0,43 0/1:1,13:14:0.90:316,0,1 0/0:15,0:15:42.13:0,42,507 0/0:16,0:16:39.12:0,39,478 0/1:8,1:9:10.71:11,0,258 0/0:69,0:69:99:0,172,2079 0/0:11,0:11:33.10:0,33,392 0/0:10,0:10:24.07:0,24,305 1/1:0,17:17:48.13:557,48,0 1/1:0,28:28:66.14:799,66,0 0/1:20,12:32:99:308,0,505 0/0:28,0:28:63.19:0,63,796 0/1:5,7:12:99:205,0,137 0/0:14,0:14:39.12:0,39,474 0/0:13,0:13:27.08:0,27,353 0/0:12,0:12:24.08:0,24,332 0/0:8,0:8:18.06:0,18,230 0/1:6,3:9:72.42:72,0,150 0/1:7,6:13:99:180,0,151 0/1:4,12:16:99:277,0,105 0/0:10,0:10:27.08:0,27,311 0/1:9,6:15:99:144,0,202 0/0:41,0:41:93.29:0,93,1200 0/0:20,1:21:20.57:0,21,577 0/1:2,9:11:41.68:278,0,42 1/1:0,18:18:42.12:502,42,0 0/0:22,0:22:60.19:0,60,747 0/0:36,0:36:90.28:0,90,1119 0/0:17,0:17:45.14:0,45,539 0/0:19,0:19:51.14:0,51,604 1/1:0,27:27:69.19:803,69,0 0/1:7,9:16:99:265,0,162 0/1:5,2:7:50.17:50,0,160 11 125479363 . G A 52458.26 . 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T C 2961.37 . 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A G 37769.55 . 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A T 54112.10 . 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G A 34365.97 . 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T C 762.30 . 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C T 1439.33 . 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C T 8682.89 . 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G A 52503.11 . 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A C 500.79 . 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G A 2087.56 . 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T C 48773.41 . 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T C 7897.76 . AC=10;AF=0.119;AN=84;BaseQRankSum=9.480;DP=2741;Dels=0.00;FS=1.679;HRun=0;HaplotypeScore=1.4464;InbreedingCoeff=0.0919;MQ=59.16;MQ0=0;MQRankSum=0.957;QD=17.09;ReadPosRankSum=-0.535 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,168,2019 0/0:40,0:40:99:0,111,1325 0/0:47,0:47:99:0,135,1593 0/0:112,0:112:99:0,283,3503 0/0:87,0:87:99:0,247,3046 0/0:56,0:56:99:0,150,1933 0/0:52,0:52:99:0,135,1719 0/0:73,0:73:99:0,205,2550 0/1:33,32:65:99:918,0,923 0/0:49,0:50:99:0,138,1671 0/1:24,22:46:99:665,0,657 0/0:50,0:50:99:0,147,1741 0/0:58,0:58:99:0,147,1820 0/0:56,0:56:99:0,153,1866 0/0:182,0:182:99:0,496,5993 0/0:58,0:58:99:0,172,2042 0/0:54,0:54:99:0,141,1739 0/1:23,31:54:99:892,0,652 0/0:105,0:105:99:0,277,3411 0/0:88,0:88:99:0,235,2841 0/0:79,0:79:99:0,217,2647 0/0:59,0:59:99:0,171,2042 0/0:92,1:93:99:0,227,3134 0/0:58,0:58:99:0,156,1956 0/0:67,0:68:99:0,187,2287 0/0:68,0:68:99:0,187,2299 0/1:24,23:47:99:662,0,684 0/0:72,0:72:99:0,187,2287 0/1:24,20:44:99:583,0,673 0/0:49,0:49:99:0,135,1608 0/0:50,0:50:99:0,144,1752 0/0:100,1:101:99:0,265,3259 0/0:57,0:57:99:0,147,1821 0/1:24,35:59:99:1033,0,638 1/1:0,50:50:99:1780,141,0 0/0:68,1:69:99:0,147,2142 0/0:69,0:69:99:0,178,2195 0/0:50,0:50:99:0,132,1564 0/0:51,0:51:99:0,147,1747 0/1:21,27:48:99:828,0,595 0/1:30,19:49:99:538,0,882 0/0:57,0:57:99:0,159,1899 11 126391297 . T G 1952 . 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T C 61581.78 . 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C G 17.26 . 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C T 1586.95 . AC=11;AF=0.131;AN=84;BaseQRankSum=-6.783;DP=501;Dels=0.00;FS=1.234;HRun=1;HaplotypeScore=0.6314;InbreedingCoeff=0.0499;MQ=58.46;MQ0=0;MQRankSum=2.516;QD=14.04;ReadPosRankSum=-1.032 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,194 0/0:7,0:7:21.05:0,21,253 0/0:15,0:15:45.13:0,45,561 0/0:14,0:14:42.13:0,42,529 0/0:13,0:13:39.13:0,39,516 0/0:19,0:19:48.15:0,48,634 0/0:11,0:11:27.09:0,27,369 0/0:11,0:11:30.08:0,30,364 0/0:13,0:14:39.10:0,39,471 0/0:4,0:4:12.03:0,12,140 0/0:14,0:14:39.12:0,39,485 0/1:2,6:9:52.76:164,0,53 0/1:5,6:11:99:174,0,133 0/0:10,0:10:30.09:0,30,367 0/0:33,0:33:81.23:0,81,1035 0/0:13,0:13:39.11:0,39,457 0/1:9,4:13:98.09:98,0,272 1/1:0,10:10:24.07:285,24,0 0/1:9,11:20:99:281,0,277 0/0:21,1:22:35.49:0,35,665 0/0:14,0:14:39.11:0,39,470 0/0:10,0:10:30.08:0,30,348 0/0:13,0:13:36.12:0,36,475 0/0:7,0:7:21.06:0,21,267 0/0:5,0:5:12.03:0,12,145 0/0:10,0:10:30.08:0,30,375 0/1:4,5:9:99:137,0,125 0/1:7,2:9:44.56:45,0,197 0/1:3,6:9:79.31:161,0,79 0/0:6,0:6:18.06:0,18,227 0/1:6,6:12:99:167,0,156 0/0:20,0:20:60.16:0,60,714 0/0:12,0:12:33.10:0,33,421 0/0:14,0:14:36.09:0,36,455 0/0:10,0:10:30.07:0,30,350 0/0:12,0:12:30.07:0,30,373 0/0:15,0:15:39.12:0,39,498 0/0:12,0:12:33.08:0,33,389 0/1:3,8:11:49.21:220,0,49 0/0:9,0:9:27.07:0,27,312 0/0:4,0:4:12.04:0,12,150 0/0:10,0:10:30.09:0,30,360 11 128774388 . C T 1956.33 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.770;DP=3574;DS;Dels=0.00;FS=2.350;HRun=1;HaplotypeScore=1.9214;InbreedingCoeff=-0.0120;MQ=59.25;MQ0=0;MQRankSum=0.379;QD=11.37;ReadPosRankSum=2.392 GT:AD:DP:GQ:PL 0/0:69,0:69:99:0,190,2424 0/0:63,0:63:99:0,181,2326 0/0:66,0:66:99:0,184,2319 0/0:169,0:169:99:0,463,6227 0/1:97,73:172:99:2003,0,3210 0/0:129,0:129:99:0,358,4868 0/0:122,0:123:99:0,328,4443 0/0:97,0:97:99:0,271,3683 0/0:75,0:75:99:0,208,2670 0/0:52,0:52:99:0,147,1874 0/0:61,0:61:99:0,178,2249 0/0:64,0:64:99:0,178,2251 0/0:50,0:50:99:0,135,1712 0/0:68,0:69:99:0,187,2358 0/0:197,0:197:99:0,539,6915 0/0:64,0:64:99:0,184,2308 0/0:77,0:77:99:0,205,2631 0/0:61,0:61:99:0,175,2182 0/0:75,0:76:99:0,199,2502 0/0:75,0:76:99:0,208,2630 0/0:99,0:99:99:0,277,3516 0/0:77,0:77:99:0,208,2648 0/0:189,0:189:99:0,527,7143 0/0:100,0:100:99:0,265,3618 0/0:114,0:114:99:0,310,4187 0/0:117,0:117:99:0,319,4357 0/0:44,0:44:99:0,123,1549 0/0:79,0:79:99:0,220,2767 0/0:66,0:66:99:0,190,2416 0/0:61,0:61:99:0,166,2111 0/0:43,0:43:99:0,120,1545 0/0:90,0:90:99:0,232,2967 0/0:69,0:69:99:0,193,2464 0/0:70,0:70:99:0,193,2463 0/0:57,0:58:99:0,169,2149 0/0:63,0:63:99:0,178,2217 0/0:87,0:87:99:0,223,2859 0/0:73,0:73:99:0,199,2567 0/0:58,0:58:99:0,172,2193 0/0:84,0:84:99:0,244,3115 0/0:63,0:63:99:0,184,2313 0/0:60,0:60:99:0,166,2123 11 128805548 . G A 3659.47 . AC=16;AF=0.190;AN=84;BaseQRankSum=-11.441;DP=790;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2710;InbreedingCoeff=-0.0814;MQ=58.03;MQ0=0;MQRankSum=-1.191;QD=12.58;ReadPosRankSum=2.018 GT:AD:DP:GQ:PL 0/0:14,0:14:27.09:0,27,373 0/0:13,0:13:30.10:0,30,392 0/0:9,0:9:24.07:0,24,291 0/0:22,0:22:60.17:0,60,775 0/0:25,0:25:63.20:0,63,849 0/1:9,8:17:99:188,0,263 0/0:10,0:10:30.10:0,30,401 0/1:8,3:11:77.30:77,0,256 0/0:16,0:16:45.12:0,45,555 0/1:9,7:16:99:205,0,278 0/0:31,0:31:75.24:0,75,985 0/0:14,0:14:39.12:0,39,498 0/0:16,0:16:45.13:0,45,569 0/0:12,0:12:30.09:0,30,381 0/1:26,23:49:99:529,0,690 0/1:6,4:10:78.42:78,0,203 0/1:5,2:7:53.33:53,0,138 0/1:6,8:14:99:219,0,158 0/0:35,0:35:87.24:0,87,1100 0/1:16,24:40:99:640,0,473 0/0:29,0:29:75.22:0,75,920 0/0:12,0:12:30.09:0,30,392 0/0:26,0:26:60.20:0,60,827 0/0:12,0:12:24.08:0,24,344 0/1:10,6:16:99:185,0,309 0/1:8,4:12:83.36:83,0,249 0/0:22,0:22:51.13:0,51,634 0/0:14,0:14:36.12:0,36,474 0/0:19,0:19:51.16:0,51,654 0/1:6,4:10:99:106,0,172 0/1:6,6:12:99:169,0,197 0/1:24,20:44:99:471,0,639 0/0:33,0:33:78.25:0,78,1020 0/1:9,9:18:99:239,0,235 0/0:18,0:18:45.15:0,45,591 1/1:0,14:15:33.10:416,33,0 0/0:24,0:24:60.16:0,60,740 0/0:16,0:16:45.12:0,45,558 0/0:14,0:14:39.12:0,39,499 0/0:21,0:21:60.18:0,60,749 0/0:12,0:12:36.11:0,36,453 0/0:10,0:10:24.07:0,24,287 11 128805557 . T C 3968.93 . AC=16;AF=0.190;AN=84;BaseQRankSum=11.421;DP=784;Dels=0.00;FS=1.941;HRun=1;HaplotypeScore=0.2104;InbreedingCoeff=-0.0813;MQ=58.09;MQ0=0;MQRankSum=-1.263;QD=13.73;ReadPosRankSum=0.979 GT:AD:DP:GQ:PL 0/0:16,0:16:33.11:0,33,440 0/0:14,0:14:33.10:0,33,427 0/0:9,0:9:24.07:0,24,289 0/0:21,0:21:57.15:0,57,693 0/0:23,0:23:57.17:0,57,727 0/1:9,6:15:99:175,0,262 0/0:8,0:8:24.08:0,24,314 0/1:9,3:12:91.15:91,0,236 0/0:16,0:16:45.14:0,45,544 0/1:10,9:19:99:288,0,230 0/0:30,0:30:75.24:0,75,954 0/0:16,0:16:36.11:0,36,445 0/0:15,0:15:42.13:0,42,516 0/0:11,0:11:33.09:0,33,388 0/1:23,23:46:99:579,0,603 0/1:6,4:10:99:114,0,179 0/1:4,3:7:97.57:98,0,122 0/1:7,8:15:99:226,0,213 0/0:29,0:29:69.22:0,69,890 0/1:16,24:40:99:659,0,418 0/0:28,0:28:69.19:0,69,856 0/0:11,0:11:30.09:0,30,361 0/0:25,0:25:54.17:0,54,711 0/0:12,0:12:27.09:0,27,353 0/1:7,6:13:99:204,0,218 0/1:8,4:12:87.43:87,0,221 0/0:20,0:20:51.15:0,51,630 0/0:15,0:15:39.12:0,39,494 0/0:17,0:17:45.13:0,45,544 0/1:6,2:8:52.89:53,0,165 0/1:8,6:14:99:158,0,207 0/1:25,20:45:99:498,0,649 0/0:33,0:33:81.25:0,81,1032 0/1:7,9:16:99:229,0,184 0/0:21,0:21:51.16:0,51,640 1/1:0,17:17:39.12:510,39,0 0/0:24,0:24:66.19:0,66,801 0/0:17,0:17:48.15:0,48,589 0/0:15,0:15:42.13:0,42,522 0/0:25,0:25:63.19:0,63,785 0/0:14,0:14:39.12:0,39,470 0/0:10,0:10:24.08:0,24,300 11 129034271 . T C 278.08 . AC=1;AF=0.012;AN=84;BaseQRankSum=5.044;DP=531;Dels=0.00;FS=1.133;HRun=0;HaplotypeScore=0.2307;InbreedingCoeff=-0.0152;MQ=59.21;MQ0=0;MQRankSum=1.242;QD=16.36;ReadPosRankSum=-0.696 GT:AD:DP:GQ:PL 0/0:7,0:7:18.05:0,18,217 0/0:11,0:11:30.09:0,30,365 0/1:4,12:17:99:324,0,103 0/0:17,0:17:42.13:0,42,523 0/0:14,0:14:33.10:0,33,424 0/0:11,0:11:30.09:0,30,378 0/0:10,0:10:27.08:0,27,338 0/0:11,0:11:27.08:0,27,341 0/0:9,0:9:27.08:0,27,313 0/0:8,0:8:24.07:0,24,285 0/0:9,0:9:27.08:0,27,314 0/0:13,0:13:33.09:0,33,402 0/0:11,0:11:27.08:0,27,330 0/0:9,0:9:27.08:0,27,319 0/0:48,0:48:99:0,111,1411 0/0:7,0:7:15.05:0,15,197 0/0:8,0:8:21.06:0,21,254 0/0:6,0:6:18.05:0,18,214 0/0:30,0:30:72.22:0,72,889 0/0:19,0:19:42.13:0,42,548 0/0:20,0:20:54.17:0,54,660 0/0:12,0:12:36.11:0,36,426 0/0:11,0:11:24.08:0,24,316 0/0:10,0:10:21.07:0,21,276 0/0:17,1:18:33.11:0,33,452 0/0:5,0:5:12.04:0,12,151 0/0:5,0:5:12.04:0,12,150 0/0:14,0:14:36.11:0,36,441 0/0:6,0:6:18.05:0,18,212 0/0:13,0:13:30.09:0,30,378 0/0:10,0:10:24.08:0,24,307 0/0:15,0:15:36.11:0,36,454 0/0:12,0:12:33.10:0,33,394 0/0:12,0:12:36.11:0,36,424 0/0:12,0:12:33.10:0,33,398 0/0:12,0:12:33.10:0,33,397 0/0:17,0:17:39.12:0,39,499 0/0:13,0:13:33.10:0,33,408 0/0:8,0:8:24.07:0,24,289 0/0:13,0:13:33.10:0,33,413 0/0:12,0:12:30.09:0,30,370 0/0:6,0:6:18.05:0,18,208 11 129744775 . G T 1407.30 . AC=24;AF=0.286;AN=84;BaseQRankSum=-22.516;DP=3883;DS;Dels=0.00;FS=1300.420;HRun=1;HaplotypeScore=2.6916;InbreedingCoeff=-0.4016;MQ=58.97;MQ0=0;MQRankSum=-0.650;QD=0.74;ReadPosRankSum=-14.907 GT:AD:DP:GQ:PL 0/0:61,19:80:50.43:0,50,1663 0/1:55,24:79:91.21:91,0,1571 0/0:54,17:71:22.48:0,22,1686 0/1:132,47:179:37.82:38,0,3699 0/0:130,47:177:99:0,102,3626 0/0:131,39:170:90.24:0,90,3976 0/0:100,25:125:99:0,196,3205 0/0:96,24:120:99:0,120,2822 0/1:59,23:82:56.61:57,0,1702 0/1:64,15:79:7.50:8,0,1740 0/1:62,17:79:46.14:46,0,1605 0/0:53,16:69:14.58:0,15,1520 0/1:32,16:48:26.86:27,0,848 0/1:49,19:68:55.93:56,0,1362 0/1:132,56:190:99:313,0,3648 0/1:41,22:63:8.39:8,0,1167 0/1:51,20:71:90.95:91,0,1247 0/1:53,24:77:99:211,0,1438 0/0:63,13:76:70.43:0,70,1866 0/0:90,19:109:56.06:0,56,2578 0/0:79,21:100:1.34:4,0,2498 0/1:52,20:72:49.08:49,0,1363 0/0:139,56:195:51.70:0,52,4346 0/0:137,28:165:99:0,172,4355 0/0:129,25:154:99:0,279,4220 0/0:103,23:126:50.44:0,50,3196 0/1:34,13:47:31.73:32,0,901 0/1:43,18:61:5.91:6,0,1101 0/0:46,10:56:33.40:0,33,1212 0/1:46,13:59:99:117,0,1295 0/1:32,21:53:43.39:43,0,1031 0/1:60,23:83:35.98:36,0,1360 0/0:47,14:61:24.73:0,25,1201 0/0:50,12:62:48.48:0,48,1430 0/1:50,18:68:6.45:6,0,1255 0/1:53,18:71:18.75:19,0,1445 0/1:55,21:76:48.54:49,0,1683 0/1:64,25:89:49.93:50,0,1627 0/1:38,14:52:33.67:34,0,1033 0/1:51,26:77:15.73:16,0,1499 0/1:51,27:78:99:176,0,1306 0/0:47,19:66:95.66:0,96,1411 11 129746704 . C T 307.37 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.528;DP=2217;Dels=0.00;FS=5.487;HRun=0;HaplotypeScore=2.2940;InbreedingCoeff=-0.0120;MQ=58.88;MQ0=0;MQRankSum=0.209;QD=7.88;ReadPosRankSum=-0.806 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,117,1435 0/0:43,0:43:99:0,123,1493 0/0:34,0:34:99:0,102,1241 0/0:126,0:126:99:0,367,4707 0/0:99,0:99:99:0,286,3802 0/0:77,0:77:99:0,217,2819 0/0:71,0:71:99:0,202,2619 0/0:77,0:77:99:0,223,2826 0/0:47,0:47:99:0,129,1548 0/0:41,0:41:99:0,117,1433 0/0:31,0:31:90.28:0,90,1098 0/0:40,0:41:99:0,117,1460 0/0:28,0:28:75.21:0,75,906 0/0:40,0:40:99:0,117,1451 0/0:119,0:121:99:0,316,3906 0/0:38,0:38:99:0,108,1291 0/0:45,0:45:99:0,126,1559 0/0:41,0:41:99:0,108,1324 0/0:49,0:49:99:0,135,1652 0/0:77,0:77:99:0,208,2571 0/0:54,0:54:99:0,153,1876 0/0:41,0:41:99:0,111,1361 0/0:111,0:111:99:0,328,4264 0/0:61,0:62:99:0,175,2263 0/0:65,0:65:99:0,175,2285 0/0:61,0:61:99:0,181,2333 0/0:38,1:39:99:0,108,1327 0/0:44,0:44:99:0,126,1530 0/0:30,0:30:78.23:0,78,951 0/0:45,0:45:99:0,129,1602 0/0:41,0:41:99:0,117,1426 0/0:66,0:66:99:0,166,2119 0/0:37,0:37:99:0,108,1313 0/0:33,0:33:96.30:0,96,1196 0/0:45,0:45:99:0,126,1561 0/0:38,0:38:99:0,111,1360 0/0:45,0:45:99:0,132,1597 0/1:25,14:39:99:354,0,763 0/0:35,0:35:93.27:0,93,1135 0/0:41,0:41:99:0,120,1471 0/0:40,0:40:99:0,114,1411 0/0:38,0:38:99:0,105,1293 11 129746707 . G T 17282.94 . 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T TC 389.09 . 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G C 469.28 . AC=10;AF=0.119;AN=84;BaseQRankSum=-17.076;DP=3424;DS;Dels=0.00;FS=1164.060;HRun=1;HaplotypeScore=2.1860;InbreedingCoeff=-0.1613;MQ=58.79;MQ0=0;MQRankSum=0.923;QD=0.74;ReadPosRankSum=-15.809 GT:AD:DP:GQ:PL 0/1:42,12:54:4.53:5,0,1218 0/0:36,14:50:73.77:0,74,1230 0/1:31,17:48:99:135,0,835 0/0:191,22:213:99:0,376,7105 0/0:168,14:183:99:0,437,6403 0/0:156,23:179:99:0,396,5844 0/0:129,7:137:99:0,370,4864 0/0:119,11:130:99:0,310,4308 0/0:34,8:42:76.62:0,77,1180 0/0:39,16:55:55.32:0,55,1284 0/1:27,18:45:14.98:15,0,826 0/0:27,14:41:46.52:0,47,813 0/0:47,6:53:99:0,120,1443 0/0:32,7:39:58.53:0,59,938 0/1:107,56:163:99:222,0,2940 0/0:39,10:49:9.48:0,9,1200 0/0:33,14:47:7.88:0,8,995 0/0:29,13:42:1.77:3,0,905 0/0:92,21:114:99:0,139,3020 0/0:88,18:106:99:0,165,2876 0/0:64,11:75:54.25:0,54,1991 0/0:59,13:72:76.30:0,76,1834 0/0:184,15:199:99:0,499,7015 0/0:115,13:129:99:0,296,4050 0/0:142,17:159:99:0,357,5292 0/0:109,17:126:99:0,262,4089 0/0:20,6:26:22.82:0,23,629 0/1:36,18:54:93.59:94,0,1015 0/0:23,16:39:3.41:0,3,761 0/1:29,15:45:35.41:35,0,922 0/1:39,16:56:14.07:14,0,1221 0/0:75,17:92:99:0,153,2478 0/0:50,28:78:7.27:0,7,1531 0/0:35,18:53:36.27:0,36,1058 0/0:41,15:56:55.36:0,55,1316 0/0:34,6:40:27.16:0,27,932 0/1:68,18:88:24.27:24,0,1727 0/0:42,10:52:50.76:0,51,1202 0/0:33,14:48:1.53:4,0,959 0/1:33,14:47:10.21:10,0,956 0/1:24,10:34:38.26:38,0,673 0/0:45,21:66:57.58:0,58,1461 11 129754644 . A G 67809.39 . AC=58;AF=0.690;AN=84;BaseQRankSum=-0.714;DP=3080;Dels=0.00;FS=36.494;HRun=1;HaplotypeScore=2.0735;InbreedingCoeff=-0.0027;MQ=59.13;MQ0=0;MQRankSum=-1.024;QD=23.84;ReadPosRankSum=0.930 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1925,162,0 0/1:27,23:50:99:553,0,760 0/1:38,23:61:99:652,0,1187 1/1:0,136:136:99:4682,364,0 0/1:66,66:132:99:1885,0,2147 1/1:0,108:108:99:3775,298,0 1/1:1,96:97:99:3459,268,0 0/1:71,60:132:99:1656,0,2147 1/1:0,54:54:99:1813,153,0 1/1:0,47:47:99:1529,126,0 1/1:0,32:32:81.23:997,81,0 0/0:76,0:76:99:0,217,2634 0/0:41,1:42:87.83:0,88,1379 0/1:19,16:35:99:447,0,527 1/1:0,180:181:99:5814,478,0 1/1:0,48:49:99:1584,132,0 1/1:0,54:55:99:1759,147,0 0/1:28,25:53:99:652,0,775 0/1:53,46:99:99:1278,0,1611 1/1:0,113:114:99:3694,310,0 1/1:0,86:86:99:2857,238,0 1/1:0,53:53:99:1771,150,0 1/1:0,128:128:99:4557,352,0 1/1:0,54:55:99:1914,150,0 0/1:75,59:135:99:1834,0,2303 1/1:0,61:61:99:2194,175,0 0/1:30,7:37:99:165,0,909 1/1:0,49:49:99:1602,135,0 0/0:61,0:61:99:0,178,2174 1/1:2,48:50:96.64:1626,97,0 0/1:31,27:58:99:681,0,890 0/1:67,42:110:99:1056,0,1943 0/1:51,33:84:99:808,0,1599 0/1:28,28:56:99:767,0,799 0/1:23,29:53:99:828,0,656 1/1:0,53:53:99:1750,144,0 1/1:0,88:88:99:2904,247,0 0/1:32,20:52:99:486,0,882 0/1:30,16:46:99:395,0,942 0/1:24,33:57:99:918,0,715 0/0:54,2:57:85.35:0,85,1835 0/1:17,18:35:99:545,0,478 11 129754668 . T C 12870.09 . AC=15;AF=0.179;AN=84;BaseQRankSum=-7.617;DP=2724;Dels=0.00;FS=13.125;HRun=0;HaplotypeScore=1.9798;InbreedingCoeff=0.1072;MQ=59.13;MQ0=0;MQRankSum=1.382;QD=15.36;ReadPosRankSum=0.170 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,132,1536 0/0:45,0:45:99:0,123,1473 0/0:56,0:56:99:0,162,1929 0/1:59,54:113:99:1551,0,1674 0/0:101,0:102:99:0,292,3512 0/0:84,0:84:99:0,235,2869 0/0:75,0:75:99:0,211,2564 0/0:107,0:109:99:0,295,3525 0/0:45,0:45:99:0,120,1393 0/0:36,1:37:99:0,108,1272 0/0:25,0:25:72.21:0,72,849 0/0:71,0:71:99:0,199,2368 0/0:39,0:39:99:0,105,1250 0/0:39,0:39:99:0,108,1257 0/0:144,0:145:99:0,382,4591 0/0:48,0:48:99:0,144,1683 0/0:43,0:43:99:0,129,1528 0/1:31,25:57:99:633,0,909 0/0:93,0:95:99:0,274,3237 0/0:95,0:98:99:0,271,3202 0/0:81,0:83:99:0,202,2380 0/1:34,23:57:99:571,0,940 0/1:45,69:114:99:2060,0,1234 1/1:0,46:46:99:1569,135,0 0/1:62,47:109:99:1290,0,1846 1/1:0,46:46:99:1608,138,0 0/1:25,9:34:99:174,0,717 0/1:18,26:44:99:732,0,460 0/0:51,0:51:99:0,147,1751 0/1:23,24:47:99:678,0,577 0/0:52,0:53:99:0,144,1736 0/0:106,1:108:99:0,283,3410 0/1:40,34:74:99:834,0,1137 0/0:53,0:53:99:0,156,1848 0/0:45,0:46:99:0,129,1536 0/0:53,0:53:99:0,147,1762 0/0:72,0:72:99:0,190,2257 0/0:50,0:50:99:0,141,1680 0/0:49,0:49:99:0,141,1569 0/1:23,27:50:99:705,0,657 0/0:62,0:62:99:0,168,1985 0/1:28,19:47:99:466,0,817 11 129756237 . A C 411.38 . AC=5;AF=0.060;AN=84;BaseQRankSum=-25.174;DP=5101;DS;Dels=0.00;FS=941.830;HRun=1;HaplotypeScore=3.1654;InbreedingCoeff=-0.0633;MQ=58.08;MQ0=1;MQRankSum=3.166;QD=0.53;ReadPosRankSum=-21.196 GT:AD:DP:GQ:PL 0/0:86,27:113:99:0,146,2702 0/0:97,27:124:85.46:0,85,3151 0/0:78,13:92:99:0,216,2560 0/0:106,50:156:99:0,176,3361 0/0:79,56:135:71.80:0,72,2492 0/0:85,46:133:73.29:0,73,2616 0/0:110,28:138:99:0,288,3809 0/0:92,35:131:99:0,189,2785 0/0:67,21:88:60.81:0,61,2001 0/0:82,19:103:99:0,209,2812 0/0:80,19:100:87.27:0,87,2409 0/0:93,22:115:99:0,228,3148 0/0:86,13:100:65.46:0,65,2716 0/0:75,23:98:99:0,139,2349 0/1:150,71:223:99:177,0,4552 0/0:67,21:88:99:0,114,2098 0/0:91,18:110:99:0,172,3035 0/0:62,28:91:31.69:0,32,1928 0/1:107,42:149:99:143,0,3196 0/0:143,45:191:99:0,287,4312 0/1:105,45:152:99:112,0,3236 0/0:89,24:114:99:0,225,2944 0/1:89,54:146:32.26:32,0,2751 0/0:107,36:144:99:0,188,3405 0/0:86,39:126:99:0,217,2906 0/0:106,29:139:99:0,230,3612 0/0:67,13:81:99:0,145,2050 0/0:84,27:112:99:0,165,2767 0/0:67,16:85:99:0,158,2202 0/0:99,13:115:99:0,228,3313 0/0:91,16:108:99:0,237,3184 0/0:118,46:166:99:0,161,3279 0/0:101,28:131:99:0,245,3433 0/0:85,25:111:99:0,152,2853 0/0:101,25:126:99:0,122,3253 0/0:88,21:111:99:0,172,2829 0/0:110,28:138:99:0,108,3452 0/0:94,18:112:99:0,136,2925 0/0:84,16:102:99:0,185,2890 0/0:77,20:99:99:0,211,2517 0/1:85,25:110:44.23:44,0,2558 0/0:73,22:95:99:0,137,2284 11 129756238 . G C 18164.18 . AC=41;AF=0.488;AN=84;BaseQRankSum=-37.229;DP=6411;DS;Dels=0.00;FS=3200.000;HRun=1;HaplotypeScore=3.1521;InbreedingCoeff=-0.9535;MQ=58.43;MQ0=1;MQRankSum=-1.933;QD=2.88;ReadPosRankSum=-35.126 GT:AD:DP:GQ:PL 0/1:82,52:134:99:299,0,2450 0/1:96,44:140:99:252,0,3067 0/1:70,41:111:40.17:40,0,2337 0/1:99,115:214:99:1184,0,3270 0/1:77,112:189:99:1250,0,2499 0/1:78,135:213:99:983,0,2619 0/1:102,81:183:99:269,0,3436 0/1:79,100:179:99:496,0,2526 0/1:64,47:111:99:315,0,2016 0/1:78,39:117:99:206,0,2401 0/1:70,48:119:99:406,0,2181 0/1:85,43:128:99:213,0,2711 0/0:83,23:106:99:0,161,2725 0/1:68,53:121:99:267,0,2025 0/1:100,150:250:99:1350,0,3119 0/1:66,45:112:99:221,0,1942 0/1:82,49:131:99:289,0,2645 0/1:61,54:115:99:345,0,1785 0/1:95,76:172:99:878,0,2933 0/1:126,120:246:99:845,0,3608 0/1:98,85:185:99:1022,0,3005 0/1:86,60:146:92.81:93,0,2634 0/1:87,130:217:99:1156,0,2843 0/1:91,89:180:99:217,0,3035 0/1:83,115:198:99:529,0,2666 0/1:95,105:200:99:313,0,3218 0/1:54,45:99:99:431,0,1754 0/1:74,56:131:99:336,0,2308 0/1:61,46:107:99:192,0,1821 0/1:87,51:138:99:103,0,2812 0/1:84,34:118:89.75:90,0,2726 0/1:99,130:229:99:601,0,2840 0/1:91,63:154:99:230,0,2931 0/1:83,53:136:99:401,0,2529 0/1:88,53:141:99:334,0,2791 0/1:81,57:138:99:296,0,2616 0/1:100,67:167:99:405,0,3053 0/1:79,65:144:99:242,0,2585 0/1:78,44:122:99:134,0,2510 0/1:70,54:124:99:246,0,2067 0/1:78,51:129:99:371,0,2379 0/1:61,55:117:99:315,0,1978 11 129756238 . G GC 18431.59 . 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T C 1709.50 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.579;DP=7476;DS;Dels=0.00;FS=5.652;HRun=1;HaplotypeScore=3.4209;InbreedingCoeff=-0.0120;MQ=56.56;MQ0=1;MQRankSum=2.497;QD=14.25;ReadPosRankSum=-0.570 GT:AD:DP:GQ:PL 0/0:148,0:148:99:0,427,5126 0/0:144,0:144:99:0,403,4889 0/0:153,1:154:99:0,428,5376 0/0:248,0:250:99:0,710,8565 0/0:245,0:246:99:0,722,8862 0/0:238,0:238:99:0,701,8772 0/0:225,0:226:99:0,644,7856 0/0:242,0:242:99:0,689,8420 0/0:134,0:134:99:0,385,4648 0/0:137,0:137:99:0,394,4723 0/0:123,0:123:99:0,352,4225 0/0:140,0:140:99:0,385,4676 0/0:135,1:136:99:0,391,4689 0/0:147,0:147:99:0,400,4868 0/0:249,0:249:99:0,689,8134 0/0:116,0:117:99:0,337,4036 0/0:162,1:163:99:0,457,5500 0/0:124,0:124:99:0,352,4265 0/0:243,0:243:99:0,692,8226 0/0:247,0:250:99:0,698,8374 0/0:249,0:249:99:0,695,8457 0/0:161,1:162:99:0,460,5455 0/0:248,0:250:99:0,704,8543 0/0:241,0:241:99:0,680,8403 0/0:244,0:244:99:0,698,8507 0/0:250,0:250:99:0,695,8624 0/0:115,0:116:99:0,328,3979 0/0:146,0:146:99:0,427,5139 0/0:129,0:129:99:0,364,4389 0/0:146,0:146:99:0,418,5071 0/1:55,65:120:99:1756,0,1531 0/0:250,0:250:99:0,701,8559 0/0:176,0:176:99:0,490,5901 0/0:174,0:174:99:0,493,5972 0/0:138,0:139:99:0,385,4765 0/0:154,0:154:99:0,427,5204 0/0:211,0:212:99:0,590,7076 0/0:166,0:166:99:0,457,5599 0/0:152,0:152:99:0,427,5120 0/0:129,0:130:99:0,376,4542 0/0:144,0:144:99:0,388,4747 0/0:114,0:114:99:0,334,4051 11 129756301 . A C 101.78 . AC=1;AF=0.012;AN=84;BaseQRankSum=-38.498;DP=6939;DS;Dels=0.00;FS=129.853;HRun=1;HaplotypeScore=2.8744;InbreedingCoeff=-0.0169;MQ=59.37;MQ0=0;MQRankSum=2.536;QD=0.51;ReadPosRankSum=-11.095 GT:AD:DP:GQ:PL 0/0:115,29:144:99:0,279,3307 0/0:117,26:143:99:0,249,3360 0/0:116,29:146:99:0,236,3395 0/0:190,60:250:99:0,437,5424 0/0:188,31:219:99:0,478,5451 0/0:201,31:234:99:0,508,5768 0/0:215,27:242:99:0,459,6055 0/0:193,21:214:99:0,490,5698 0/0:109,25:134:99:0,229,3066 0/0:83,21:104:99:0,163,2308 0/0:91,22:113:99:0,178,2585 0/0:104,19:123:99:0,262,2918 0/0:97,23:121:99:0,227,2752 0/0:98,28:126:99:0,192,2799 0/0:159,87:250:99:0,185,3995 0/0:91,19:110:99:0,161,2428 0/0:106,27:134:99:0,194,3085 0/0:92,32:124:99:0,212,2622 0/1:113,87:201:99:148,0,2698 0/0:213,26:239:99:0,547,6193 0/0:147,74:221:11.47:0,11,3893 0/0:111,14:126:99:0,252,3242 0/0:206,44:250:99:0,518,6161 0/0:220,16:236:99:0,537,6510 0/0:190,36:226:99:0,462,5457 0/0:198,13:211:99:0,447,5367 0/0:87,22:109:99:0,209,2534 0/0:100,33:133:99:0,235,2929 0/0:95,28:124:99:0,255,2777 0/0:112,28:140:99:0,286,3255 0/0:103,17:120:99:0,265,2984 0/0:212,26:239:99:0,499,6127 0/0:159,17:176:99:0,409,4631 0/0:129,24:154:99:0,340,4083 0/0:104,26:130:99:0,259,2907 0/0:112,28:140:99:0,210,3275 0/0:143,83:227:3.15:0,3,3742 0/0:103,24:127:99:0,265,2990 0/0:107,30:137:99:0,274,3316 0/0:93,20:113:99:0,207,2564 0/0:96,22:118:99:0,200,2718 0/0:85,24:111:99:0,220,2498 11 129775599 . C T 1726.88 . AC=3;AF=0.036;AN=84;BaseQRankSum=-2.679;DP=2431;Dels=0.00;FS=2.906;HRun=1;HaplotypeScore=0.7525;InbreedingCoeff=-0.0370;MQ=59.22;MQ0=0;MQRankSum=1.037;QD=11.51;ReadPosRankSum=-1.201 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,120,1543 0/0:65,0:65:99:0,160,2070 0/0:49,0:49:99:0,144,1817 0/0:109,0:109:99:0,286,3865 0/0:68,0:68:99:0,184,2546 0/1:32,31:63:99:888,0,1018 0/1:27,23:50:99:527,0,874 0/0:88,0:88:99:0,217,2989 0/0:47,0:47:99:0,126,1613 0/0:40,0:40:99:0,114,1418 0/0:37,0:37:99:0,102,1306 0/0:50,0:50:99:0,135,1715 0/0:38,0:38:99:0,99,1263 0/1:21,16:37:99:388,0,695 0/0:129,0:129:99:0,310,4046 0/0:47,0:47:99:0,129,1628 0/0:48,0:48:99:0,129,1631 0/0:44,0:44:99:0,114,1474 0/0:65,0:66:99:0,172,2185 0/0:82,0:82:99:0,202,2622 0/0:65,0:65:99:0,175,2184 0/0:45,0:45:99:0,120,1527 0/0:87,0:87:99:0,220,3039 0/0:58,0:58:99:0,141,1945 0/0:64,0:64:99:0,169,2334 0/0:68,0:68:99:0,181,2426 0/0:41,0:41:99:0,108,1388 0/0:70,0:70:99:0,181,2296 0/0:55,0:55:99:0,144,1872 0/0:52,0:52:99:0,135,1728 0/0:45,0:45:99:0,123,1553 0/0:59,0:59:99:0,150,1944 0/0:45,0:45:99:0,105,1365 0/0:58,0:58:99:0,160,2047 0/0:56,0:56:99:0,160,2024 0/0:52,0:52:99:0,120,1592 0/0:63,0:63:99:0,166,2073 0/0:66,0:66:99:0,181,2292 0/0:54,0:55:99:0,153,1948 0/0:49,0:49:99:0,129,1625 0/0:33,0:33:87.28:0,87,1126 0/0:45,0:45:99:0,126,1606 11 129801043 . C T 57506.77 . AC=38;AF=0.452;AN=84;BaseQRankSum=-14.685;DP=3769;Dels=0.00;FS=9.766;HRun=1;HaplotypeScore=5.0609;InbreedingCoeff=0.0389;MQ=58.20;MQ0=0;MQRankSum=1.176;QD=21.17;ReadPosRankSum=-1.173 GT:AD:DP:GQ:PL 0/1:46,31:77:99:852,0,1292 0/1:29,28:58:99:849,0,866 0/0:67,1:68:99:0,152,2282 0/1:74,73:147:99:2195,0,2154 0/1:91,67:159:99:1908,0,3046 1/1:0,123:123:99:4456,340,0 1/1:0,85:85:99:3056,238,0 0/1:55,49:104:99:1482,0,1647 1/1:0,60:60:99:2048,163,0 0/1:31,26:57:99:760,0,881 0/1:34,27:61:99:810,0,1086 0/0:62,0:62:99:0,175,2221 0/0:47,0:47:99:0,135,1687 0/1:39,43:82:99:1197,0,1232 1/1:0,220:220:99:6983,554,0 0/1:33,47:80:99:1398,0,934 1/1:1,64:65:99:2203,144,0 0/0:51,0:51:99:0,144,1811 0/0:120,0:120:99:0,331,4148 0/0:159,0:159:99:0,433,5502 1/1:1,129:130:99:4463,358,0 0/1:40,45:85:99:1239,0,1183 0/0:168,1:169:99:0,430,6260 0/1:66,64:130:99:1847,0,1987 0/1:61,65:127:99:2075,0,1845 0/1:34,42:76:99:1288,0,1041 0/1:29,35:64:99:1017,0,882 1/1:0,52:52:99:1840,147,0 0/0:49,0:49:99:0,138,1751 0/1:32,31:63:99:878,0,910 0/0:62,0:62:99:0,181,2293 0/1:60,68:128:99:1912,0,1744 0/1:43,50:93:99:1379,0,1311 0/1:28,34:63:99:1040,0,773 0/1:37,38:75:99:1113,0,1136 0/0:68,0:68:99:0,187,2381 1/1:0,118:118:99:4024,325,0 0/1:35,25:60:99:595,0,1083 1/1:0,74:74:99:2601,211,0 0/0:67,0:67:99:0,190,2381 0/0:55,2:57:99:0,112,1921 0/0:73,1:74:99:0,172,2550 11 129801108 . GTTCAGCCTCATCAAATTGCTCCTTTGT G 8346.47 . AC=40;AF=0.476;AN=84;BaseQRankSum=-19.092;DP=2745;FS=3200.000;HRun=0;HaplotypeScore=1196.0643;InbreedingCoeff=-0.8729;MQ=58.10;MQ0=0;MQRankSum=2.600;QD=3.15;ReadPosRankSum=-27.065 GT:AD:DP:GQ:PL 0/1:47,0:47:25.20:25,0,10845 0/1:37,0:37:99:185,0,8071 0/1:49,0:49:97.09:97,0,12733 0/1:115,0:115:99:417,0,27252 0/1:124,0:124:99:438,0,31672 0/1:89,0:87:99:407,0,18095 0/1:64,0:62:99:359,0,14014 0/1:90,0:85:99:195,0,21007 0/1:44,0:44:99:150,0,11991 0/1:45,0:45:54.66:55,0,12734 0/1:42,0:42:99:139,0,11206 0/1:48,0:48:57.85:58,0,12647 0/1:43,0:43:99:122,0,10694 0/0:48,0:48:62.11:0,62,13709 0/1:155,0:155:99:337,0,37683 0/1:51,0:51:87.02:87,0,13246 0/1:55,0:55:99:312,0,11895 0/1:47,0:47:99:144,0,11896 0/1:82,0:82:14.88:15,0,22136 0/1:102,0:102:99:182,0,25885 0/1:94,0:94:99:132,0,23027 0/1:59,0:59:99:173,0,13026 0/1:113,0:113:99:398,0,28939 0/1:66,0:66:99:414,0,14235 0/1:98,0:95:99:309,0,24255 0/1:67,0:67:99:316,0,14464 0/1:45,0:45:99:376,0,8638 0/1:52,0:52:99:158,0,11683 0/1:35,0:35:99:156,0,7595 0/1:53,0:53:99:301,0,11352 0/1:44,0:44:3.72:4,0,11278 0/1:92,0:92:99:171,0,22147 0/1:51,21:72:99:439,0,14473 0/1:53,0:53:99:109,0,12568 0/1:51,0:51:19.43:19,0,11128 0/1:52,0:51:99:236,0,11390 0/1:71,0:71:2.95:0,0,17938 0/1:45,0:45:99:290,0,9886 0/1:55,0:55:99:139,0,14436 0/0:45,0:45:66.18:0,66,12695 0/1:44,0:44:99:233,0,8347 0/1:62,0:62:99:247,0,16445 11 129801109 . T G 5511.63 . AC=33;AF=0.393;AN=84;BaseQRankSum=-3.157;DP=2745;Dels=0.01;FS=3110.672;HRun=2;HaplotypeScore=3.6539;InbreedingCoeff=-0.6428;MQ=58.10;MQ0=0;MQRankSum=0.793;QD=2.52;ReadPosRankSum=-27.568 GT:AD:DP:GQ:PL 0/1:40,7:47:19.34:19,0,1293 0/1:26,11:37:99:163,0,807 0/1:41,8:49:8.87:9,0,1301 0/1:88,27:115:99:233,0,2752 0/1:99,25:124:99:277,0,3232 0/1:60,29:89:99:345,0,1959 0/1:46,18:64:99:330,0,1486 0/1:68,22:90:99:215,0,2281 0/1:35,9:44:97.07:97,0,1116 0/1:39,6:45:24.99:25,0,1191 0/1:34,8:42:63.11:63,0,1063 0/0:38,10:48:9.32:0,9,1138 0/1:35,8:43:99:132,0,1070 0/0:41,7:48:53.80:0,54,1423 0/1:125,30:155:91.09:91,0,3801 0/1:42,9:51:3.71:4,0,1340 0/1:39,16:55:99:266,0,1239 0/1:37,10:47:89.06:89,0,1165 0/0:72,10:82:71.25:0,71,2294 0/1:83,19:102:99:128,0,2685 0/0:76,18:94:11.30:0,11,2365 0/1:44,15:59:99:142,0,1372 0/1:91,22:113:99:253,0,2892 0/1:46,20:66:99:326,0,1488 0/1:72,26:98:99:212,0,2288 0/1:47,20:67:99:282,0,1521 0/1:29,16:45:99:312,0,923 0/1:38,14:52:99:115,0,1136 0/1:25,10:35:65.54:66,0,737 0/1:37,16:53:99:232,0,1133 0/0:34,10:44:8.52:0,9,1117 0/1:71,21:92:99:157,0,2302 0/0:50,0:51:99:0,147,1802 0/1:43,10:53:78.40:78,0,1372 0/0:42,9:51:78.16:0,78,1331 0/1:36,16:52:99:112,0,1067 0/0:64,7:71:99:0,140,2051 0/1:32,13:45:99:210,0,957 0/1:45,10:55:99:113,0,1459 0/0:42,3:45:96.90:0,97,1511 0/1:29,15:44:99:189,0,840 0/1:48,14:62:99:229,0,1546 11 129801124 . T C 9828.29 . AC=10;AF=0.119;AN=84;BaseQRankSum=11.890;DP=2636;Dels=0.01;FS=8.240;HRun=0;HaplotypeScore=10.9512;InbreedingCoeff=-0.1351;MQ=57.34;MQ0=0;MQRankSum=3.167;QD=15.26;ReadPosRankSum=-0.785 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,120,1414 0/0:42,0:42:99:0,120,1444 0/0:49,0:50:99:0,147,1768 0/0:104,0:105:99:0,304,3688 0/0:108,0:108:99:0,316,4030 0/1:42,38:80:99:1277,0,1378 0/1:28,28:56:99:893,0,907 0/0:89,0:89:99:0,262,3258 0/0:50,0:50:99:0,147,1759 0/0:47,0:47:99:0,141,1689 0/0:46,0:46:99:0,132,1598 0/0:45,0:46:99:0,135,1643 0/0:44,0:44:99:0,126,1537 0/0:51,0:51:99:0,153,1842 0/1:85,79:165:99:2360,0,2502 0/0:52,0:53:99:0,150,1817 0/1:24,22:46:99:676,0,741 0/0:38,0:38:99:0,111,1341 0/0:92,0:92:99:0,268,3268 0/0:104,0:104:99:0,304,3662 0/0:82,0:82:99:0,235,2815 0/0:51,0:51:99:0,150,1799 0/0:109,0:109:99:0,316,3925 0/0:63,0:63:99:0,178,2173 0/0:94,0:94:99:0,268,3363 0/1:31,21:52:99:705,0,969 0/1:14,26:40:99:833,0,377 0/1:33,18:51:99:479,0,1002 0/0:39,0:39:99:0,111,1324 0/0:43,0:43:99:0,129,1554 0/0:48,0:48:99:0,138,1653 0/0:75,0:76:99:0,223,2694 0/0:54,0:54:99:0,156,1882 0/1:22,26:48:99:802,0,667 0/1:17,34:51:99:1074,0,482 0/0:43,0:43:99:0,129,1552 0/0:71,0:71:99:0,202,2434 0/0:48,0:48:99:0,138,1652 0/1:31,24:55:99:730,0,952 0/0:45,0:45:99:0,132,1621 0/0:34,0:34:99:0,102,1227 0/0:63,0:63:99:0,187,2267 11 129817139 . C T 742.58 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.205;DP=2842;Dels=0.00;FS=5.802;HRun=1;HaplotypeScore=1.4677;InbreedingCoeff=-0.0120;MQ=59.23;MQ0=0;MQRankSum=-0.577;QD=15.15;ReadPosRankSum=-0.575 GT:AD:DP:GQ:PL 0/0:62,0:62:99:0,172,2144 0/0:37,0:37:99:0,99,1253 0/0:41,0:41:99:0,111,1407 0/0:167,0:168:99:0,442,5873 0/0:148,0:148:99:0,406,5404 0/0:107,0:107:99:0,292,3845 0/0:102,0:102:99:0,277,3694 0/0:89,0:89:99:0,250,3257 0/0:44,0:44:99:0,126,1600 0/0:49,0:49:99:0,132,1657 0/0:52,0:52:99:0,150,1868 0/0:42,0:42:99:0,114,1442 0/0:33,0:33:87.28:0,87,1121 0/0:56,0:56:99:0,159,1926 0/0:149,0:149:99:0,376,4802 0/0:55,0:55:99:0,150,1902 0/0:39,0:39:99:0,114,1410 0/0:43,0:43:99:0,111,1409 0/0:94,0:94:99:0,259,3133 0/0:97,0:97:99:0,259,3290 0/0:89,1:90:99:0,238,2979 0/0:46,0:46:99:0,138,1672 0/0:148,0:148:99:0,409,5432 0/0:100,0:100:99:0,265,3579 0/0:100,0:100:99:0,265,3531 0/0:83,0:83:99:0,238,3141 0/0:45,0:45:99:0,129,1599 0/1:19,30:49:99:789,0,548 0/0:44,0:44:99:0,120,1524 0/0:34,1:35:93.28:0,93,1159 0/0:58,0:58:99:0,169,2091 0/0:90,0:90:99:0,229,2972 0/0:48,0:48:99:0,138,1750 0/0:46,0:46:99:0,123,1553 0/0:36,0:36:99:0,105,1312 0/0:39,0:39:99:0,105,1342 0/0:62,0:62:99:0,159,1918 0/0:47,0:47:99:0,138,1700 0/0:36,0:36:99:0,105,1279 0/0:56,0:56:99:0,156,1969 0/0:29,0:29:84.26:0,84,1051 0/0:48,0:48:99:0,138,1704 11 129817155 . T C 538.43 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.135;DP=2793;Dels=0.00;FS=7.814;HRun=1;HaplotypeScore=1.5817;InbreedingCoeff=-0.0120;MQ=59.27;MQ0=0;MQRankSum=-0.047;QD=17.37;ReadPosRankSum=0.223 GT:AD:DP:GQ:PL 0/0:56,0:57:99:0,165,1991 0/0:36,0:36:99:0,102,1247 0/0:44,0:44:99:0,120,1504 0/0:152,0:152:99:0,412,5216 0/0:131,0:131:99:0,358,4573 0/0:111,0:111:99:0,301,3840 0/0:97,0:97:99:0,256,3313 0/0:92,0:92:99:0,271,3438 0/0:47,0:47:99:0,129,1600 0/0:42,0:42:99:0,114,1387 0/0:45,0:45:99:0,126,1554 0/0:43,0:43:99:0,120,1491 0/0:37,0:37:99:0,102,1276 0/0:55,0:55:99:0,159,1949 0/0:164,0:164:99:0,448,5571 0/0:58,0:58:99:0,169,2067 0/0:53,0:53:99:0,150,1861 0/0:50,0:50:99:0,141,1745 0/0:92,1:93:99:0,235,2955 0/0:92,0:92:99:0,253,3163 0/0:82,0:82:99:0,223,2795 0/0:44,0:44:99:0,129,1545 0/0:144,0:144:99:0,394,5003 0/0:93,0:93:99:0,250,3251 0/0:92,0:93:99:0,250,3225 0/0:82,0:82:99:0,229,2910 0/0:43,0:43:99:0,123,1507 0/0:57,0:57:99:0,159,1960 0/0:36,0:36:99:0,99,1235 0/0:27,0:27:81.25:0,81,1008 0/0:62,0:62:99:0,172,2146 0/0:76,0:76:99:0,211,2640 0/0:45,0:45:99:0,135,1645 0/0:50,0:50:99:0,141,1742 0/1:12,19:31:99:585,0,343 0/0:44,0:44:99:0,120,1511 0/0:67,0:68:99:0,172,2133 0/0:48,0:48:99:0,138,1707 0/0:36,0:36:99:0,108,1315 0/0:52,0:52:99:0,150,1842 0/0:34,0:34:96.27:0,96,1160 0/0:47,0:47:99:0,132,1632 11 129817221 . A G 498.68 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.766;DP=2664;Dels=0.00;FS=0.862;HRun=0;HaplotypeScore=1.3360;InbreedingCoeff=-0.0120;MQ=59.16;MQ0=0;MQRankSum=-0.187;QD=12.79;ReadPosRankSum=-0.096 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,159,1879 0/0:31,0:31:90.28:0,90,1110 0/0:45,0:45:99:0,129,1518 0/0:97,0:98:99:0,277,3274 0/0:96,1:97:99:0,283,3353 0/0:90,0:91:99:0,253,3052 0/0:62,0:63:99:0,180,2137 0/0:63,1:68:99:0,180,2107 0/0:42,0:44:99:0,117,1395 0/0:37,1:38:99:0,102,1224 0/0:56,0:56:99:0,159,1840 0/0:42,0:42:99:0,126,1502 0/0:39,0:39:99:0,108,1300 0/0:46,0:46:99:0,132,1535 0/0:186,0:187:99:0,505,6008 0/0:49,0:49:99:0,144,1717 0/0:42,0:42:99:0,126,1478 0/0:50,0:50:99:0,141,1687 0/0:85,0:87:99:0,229,2764 0/0:91,0:91:99:0,241,2915 0/0:89,0:91:99:0,241,2887 0/0:58,0:58:99:0,159,1909 0/0:95,2:98:99:0,271,3233 0/0:68,0:68:99:0,202,2389 0/0:63,0:63:99:0,178,2130 0/0:58,0:59:99:0,165,1998 0/0:53,0:53:99:0,156,1869 0/1:19,20:39:99:545,0,556 0/0:38,0:38:99:0,111,1320 0/0:69,0:69:99:0,187,2240 0/0:55,1:57:99:0,139,1871 0/0:99,0:100:99:0,277,3346 0/0:53,0:53:99:0,153,1849 0/0:50,1:51:99:0,147,1778 0/0:54,0:54:99:0,153,1821 0/0:50,0:51:99:0,147,1753 0/0:77,0:78:99:0,205,2444 0/0:62,0:62:99:0,175,2092 0/0:51,0:51:99:0,144,1707 0/0:58,0:58:99:0,171,2019 0/0:41,1:42:99:0,120,1424 0/0:51,0:51:99:0,147,1773 11 129939900 . G C 26.57 . AC=5;AF=0.081;AN=62;BaseQRankSum=-1.408;DP=88;Dels=0.00;FS=69.871;HRun=2;HaplotypeScore=0.0898;InbreedingCoeff=0.0331;MQ=56.71;MQ0=0;MQRankSum=0.669;QD=2.66;ReadPosRankSum=-2.766 GT:AD:DP:GQ:PL 0/0:2,2:4:1.89:0,2,29 ./. 1/1:0,1:1:3.01:35,3,0 0/0:8,0:8:24.06:0,24,265 0/0:4,1:5:6.02:0,6,68 0/0:2,0:2:6.01:0,6,63 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6:0,6,53 ./. 0/0:3,2:5:4.25:0,4,34 0/1:2,1:3:23.48:23,0,50 0/0:1,0:1:3.01:0,3,32 ./. 0/0:1,0:1:3:0,3,29 0/0:2,0:2:6.02:0,6,66 0/0:1,0:1:3.01:0,3,32 0/0:3,0:3:9.02:0,9,91 ./. 0/0:4,0:4:6.01:0,6,64 0/0:1,2:3:3.01:0,3,32 0/1:4,1:5:17.46:17,0,118 ./. 0/0:3,0:3:6.02:0,6,69 0/0:2,1:3:6.01:0,6,66 0/0:3,1:4:9.02:0,9,101 0/0:3,0:3:6.02:0,6,73 0/1:0,1:1:1.76:30,3,0 0/0:1,0:1:3.01:0,3,33 ./. 0/0:3,0:3:3.01:0,3,32 0/0:2,0:2:3.01:0,3,32 0/0:3,2:5:6.01:0,6,63 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6.02:0,6,65 ./. ./. 0/0:1,0:1:3.01:0,3,33 0/0:2,1:3:6.02:0,6,65 0/0:2,1:3:3.01:0,3,31 ./. ./. ./. 11 129991634 . AGAAGAG A 2592.89 . AC=1;AF=0.012;AN=84;BaseQRankSum=11.848;DP=4726;DS;FS=1.149;HRun=0;HaplotypeScore=627.8023;InbreedingCoeff=-0.0120;MQ=59.16;MQ0=0;MQRankSum=-2.430;QD=19.21;ReadPosRankSum=0.409 GT:AD:DP:GQ:PL 0/0:84,0:83:99:0,193,5186 0/0:100,0:100:99:0,187,4726 0/0:76,0:76:99:0,147,3276 0/0:143,0:142:99:0,298,10006 0/0:155,0:155:99:0,439,12581 0/0:157,0:151:99:0,392,8351 0/1:86,49:134:99:2648,0,4496 0/0:148,0:143:99:0,349,7135 0/0:86,0:86:99:0,196,5240 0/0:95,0:95:99:0,165,3785 0/0:75,0:75:99:0,178,5066 0/0:108,0:108:99:0,265,7024 0/0:78,0:78:99:0,181,4903 0/0:95,0:94:99:0,227,6056 0/0:241,0:240:99:0,650,17857 0/0:87,0:87:99:0,220,5856 0/0:118,0:118:99:0,286,7512 0/0:88,0:87:99:0,177,4514 0/0:130,0:130:99:0,263,5575 0/0:124,0:124:99:0,307,8564 0/0:156,0:156:99:0,364,9989 0/0:85,0:85:99:0,202,5324 0/0:167,0:166:99:0,452,12716 0/0:147,0:143:99:0,352,9810 0/0:157,0:151:99:0,385,10618 0/0:150,0:143:99:0,379,10317 0/0:77,0:76:99:0,193,5231 0/0:103,0:103:99:0,226,6084 0/0:87,0:87:99:0,211,5936 0/0:103,0:103:99:0,253,6729 0/0:81,0:81:99:0,193,5464 0/0:147,0:147:99:0,352,9470 0/0:86,0:86:99:0,220,6066 0/0:90,0:90:99:0,232,6331 0/0:82,0:81:99:0,190,5029 0/0:106,0:106:99:0,259,7145 0/0:132,0:132:99:0,340,9191 0/0:79,0:79:99:0,192,5379 0/0:109,0:109:99:0,256,6962 0/0:92,0:92:99:0,205,5691 0/0:79,0:79:99:0,167,3495 0/0:88,0:88:99:0,196,5007 11 129991652 . TGAAGAG T 13932.71 . AC=8;AF=0.095;AN=84;BaseQRankSum=25.685;DP=4329;DS;FS=2.898;HRun=0;HaplotypeScore=563.7433;InbreedingCoeff=-0.1053;MQ=59.22;MQ0=0;MQRankSum=9.353;QD=17.29;ReadPosRankSum=-0.719 GT:AD:DP:GQ:PL 0/0:74,0:73:99:0,154,4242 0/1:60,31:91:99:1519,0,2374 0/1:46,21:67:99:1020,0,1723 0/0:145,0:144:99:0,321,8720 0/0:173,0:173:99:0,391,10352 0/1:103,50:150:99:2451,0,4397 0/0:118,0:115:99:0,228,4252 0/1:84,54:135:99:2665,0,3527 0/0:76,0:76:99:0,160,4321 0/1:54,26:80:99:1307,0,1982 0/0:72,0:72:99:0,181,4494 0/0:89,0:89:99:0,187,4608 0/0:64,0:64:99:0,138,3694 0/0:83,0:82:99:0,187,4470 0/0:248,0:247:99:0,506,12585 0/0:81,0:81:99:0,160,4217 0/0:102,0:102:99:0,229,5818 0/1:58,29:87:99:1414,0,2850 0/1:68,46:113:99:2208,0,2440 0/0:110,0:110:99:0,232,5820 0/0:128,1:129:99:0,283,7275 0/0:74,0:74:99:0,153,3686 0/0:173,0:172:99:0,352,9658 0/0:126,0:123:99:0,295,7792 0/0:140,0:137:99:0,310,8576 0/0:126,0:119:99:0,274,7607 0/0:65,0:64:99:0,154,4142 0/0:85,0:85:99:0,193,5050 0/0:88,0:88:99:0,193,5089 0/0:87,0:87:99:0,175,4530 0/0:84,0:84:99:0,199,5181 0/0:131,0:131:99:0,295,7517 0/0:86,0:86:99:0,115,4668 0/0:86,0:86:99:0,190,5010 0/0:70,0:69:99:0,144,3800 0/0:87,0:87:99:0,187,5074 0/0:118,0:118:99:0,265,6810 0/0:74,0:74:99:0,154,4764 0/0:104,0:104:99:0,220,5746 0/0:84,0:84:99:0,178,4360 0/1:51,25:76:99:1349,0,1833 0/0:71,0:71:99:0,163,4228 11 130068491 . G C 3211.30 . AC=6;AF=0.071;AN=84;BaseQRankSum=6.892;DP=1167;Dels=0.00;FS=0.851;HRun=0;HaplotypeScore=1.3258;InbreedingCoeff=-0.0770;MQ=59.09;MQ0=0;MQRankSum=1.170;QD=13.11;ReadPosRankSum=-0.647 GT:AD:DP:GQ:PL 0/0:14,0:15:42.13:0,42,515 0/0:20,0:20:54.14:0,54,648 0/0:25,0:25:72.22:0,72,878 0/1:28,31:60:99:981,0,819 0/0:62,0:62:99:0,169,2113 0/0:50,0:50:99:0,138,1794 0/1:24,16:40:99:496,0,605 0/0:39,0:39:99:0,108,1324 0/0:22,0:22:63.13:0,63,721 0/0:17,0:17:42.12:0,42,489 0/0:12,0:13:33.09:0,33,397 0/0:13,0:13:30.07:0,30,342 0/0:18,0:18:48.12:0,48,577 0/0:14,0:14:36.11:0,36,453 0/0:62,0:63:99:0,162,1945 0/0:22,0:22:63.19:0,63,765 0/0:25,0:25:69.16:0,69,800 0/0:20,0:21:57.17:0,57,700 0/0:40,0:40:99:0,114,1323 0/1:34,24:59:99:659,0,809 0/0:36,0:36:93.23:0,93,1059 0/0:27,0:27:72.22:0,72,878 0/1:26,19:45:99:507,0,822 0/0:32,0:32:90.28:0,90,1157 0/0:34,0:34:87.27:0,87,1139 0/0:24,0:24:69.19:0,69,863 0/0:12,0:12:27.05:0,27,319 0/0:22,0:22:63.18:0,63,754 0/0:14,0:15:39.10:0,39,459 0/0:12,0:12:36.08:0,36,421 0/0:16,0:16:48.13:0,48,573 0/0:37,0:37:90.21:0,90,1058 0/0:30,0:30:81.21:0,81,940 0/1:9,7:16:99:199,0,257 0/0:20,0:20:54.14:0,54,636 0/1:9,15:25:99:475,0,233 0/0:30,0:31:78.22:0,78,925 0/0:28,0:28:78.19:0,78,910 0/0:20,0:20:57.17:0,57,681 0/0:18,0:18:48.13:0,48,571 0/0:14,0:14:36.11:0,36,429 0/0:15,0:15:33.10:0,33,424 11 130281488 . G A 47144.90 . AC=66;AF=0.786;AN=84;BaseQRankSum=-24.863;DP=2037;Dels=0.00;FS=1.090;HRun=0;HaplotypeScore=1.0777;InbreedingCoeff=-0.1313;MQ=58.85;MQ0=0;MQRankSum=2.843;QD=23.69;ReadPosRankSum=1.485 GT:AD:DP:GQ:PL 1/1:0,34:35:90.24:1043,90,0 0/1:32,21:53:99:543,0,907 0/1:12,18:30:99:464,0,348 1/1:0,95:95:99:2867,247,0 1/1:0,60:60:99:1906,165,0 1/1:0,52:52:99:1622,135,0 1/1:0,38:38:99:1203,99,0 1/1:0,57:57:99:1815,153,0 1/1:0,37:37:99:1178,99,0 1/1:0,34:34:96.22:1072,96,0 1/1:0,38:39:99:1233,108,0 1/1:0,38:38:99:1172,99,0 1/1:0,29:29:81.24:962,81,0 0/1:18,13:31:99:326,0,469 1/1:0,162:162:99:4761,394,0 1/1:0,41:41:99:1360,117,0 0/1:26,13:40:99:253,0,711 0/1:22,17:39:99:491,0,607 1/1:1,68:70:99:1998,141,0 0/1:37,27:64:99:689,0,1032 1/1:0,72:72:99:2185,181,0 1/1:0,36:36:96.25:1108,96,0 0/1:45,32:77:99:860,0,1315 0/1:43,15:58:99:337,0,1274 1/1:0,43:43:99:1448,120,0 0/1:27,18:45:99:451,0,925 1/1:0,28:28:78.20:901,78,0 1/1:0,47:47:99:1467,126,0 1/1:0,36:36:96.23:1100,96,0 1/1:1,30:31:48.11:916,48,0 1/1:1,44:45:99:1449,126,0 1/1:0,56:56:99:1778,147,0 0/1:25,26:51:99:689,0,717 0/1:15,17:32:99:497,0,478 1/1:0,37:37:99:1195,102,0 0/0:47,0:47:99:0,117,1481 1/1:0,49:49:99:1481,129,0 0/1:24,15:39:99:378,0,693 0/1:16,20:36:99:541,0,369 0/1:23,23:46:99:572,0,608 0/1:22,14:37:99:323,0,633 0/1:25,20:45:99:513,0,756 11 130332577 . A ACC 68.13 . AC=3;AF=0.036;AN=84;BaseQRankSum=11.661;DP=3600;FS=1281.418;HRun=3;HaplotypeScore=393.4221;InbreedingCoeff=-0.0374;MQ=57.60;MQ0=0;MQRankSum=0.510;QD=0.20;ReadPosRankSum=-17.490 GT:AD:DP:GQ:PL 0/0:63,0:63:99:0,135,1852 0/0:51,3:62:99:0,114,1584 0/0:59,0:59:93.25:0,93,1263 0/0:216,0:216:27.35:0,27,5391 0/1:197,0:197:99:103,0,4586 0/0:135,0:133:99:0,128,3429 0/0:107,0:106:99:0,150,2652 0/0:123,0:118:99:0,130,2727 0/0:55,0:54:56.79:0,57,1138 0/0:54,0:54:26.57:0,27,1226 0/0:41,0:41:81.25:0,81,1108 0/0:46,0:46:78.24:0,78,1077 0/0:46,0:46:90.23:0,90,1198 0/0:57,0:57:52.52:0,53,1293 0/0:187,0:187:99:0,137,4168 0/0:66,0:65:28.54:0,29,1223 0/1:82,0:82:28.69:29,0,1670 0/1:58,0:58:20.28:20,0,1122 0/0:115,0:115:59.34:0,59,2613 0/0:111,0:111:99:0,189,2950 0/0:107,0:107:24.45:0,24,2707 0/0:68,0:68:99:0,104,1796 0/0:218,0:218:99:0,239,5576 0/0:109,0:108:54.62:0,55,2729 0/0:111,0:111:99:0,191,3324 0/0:93,0:91:99:0,196,2620 0/0:57,0:57:61.32:0,61,1089 0/0:52,0:52:64.83:0,65,1148 0/0:53,0:53:64.29:0,64,1121 0/0:48,0:48:99:0,102,1375 0/0:54,0:54:99:0,99,1350 0/0:129,0:129:99:0,234,3451 0/0:78,0:78:15.44:0,15,1456 0/0:64,0:64:61.62:0,62,1439 0/0:53,0:53:73.29:0,73,1208 0/0:63,0:63:31.99:0,32,1643 0/0:97,0:97:26.23:0,26,2070 0/0:54,0:54:55.37:0,55,1231 0/0:60,0:60:64.60:0,65,1438 0/0:57,0:57:99:0,114,1561 0/0:35,0:35:66.20:0,66,907 0/0:60,0:60:99:0,99,1367 11 130339220 . G A 348.20 . 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T C 22982.87 . 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G A 15377.94 . 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G A 544.35 . 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C T 1695.66 . 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G A 34831.05 . 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C T 8661.69 . 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C G 5567.76 . 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A C 10.69 . 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T C 54729.27 . AC=30;AF=0.357;AN=84;BaseQRankSum=45.177;DP=4876;DS;Dels=0.00;FS=7.821;HRun=0;HaplotypeScore=1.9828;InbreedingCoeff=0.0667;MQ=59.52;MQ0=0;MQRankSum=0.366;QD=19.55;ReadPosRankSum=1.737 GT:AD:DP:GQ:PL 0/1:55,62:117:99:1927,0,1486 0/1:66,57:123:99:1573,0,1854 0/1:47,56:103:99:1730,0,1364 0/1:98,82:180:99:2530,0,2508 1/1:0,153:153:99:5462,400,0 0/1:63,59:122:99:1789,0,1746 0/0:109,0:109:99:0,286,3500 0/1:57,69:126:99:2157,0,1513 1/1:1,107:108:99:3666,260,0 0/1:49,33:82:99:958,0,1390 1/1:0,95:95:99:3447,271,0 0/1:58,62:120:99:1798,0,1560 0/0:88,0:88:99:0,253,2996 1/1:0,109:109:99:3821,298,0 0/0:249,0:249:99:0,662,7922 0/1:48,35:83:99:1057,0,1411 0/1:64,45:109:99:1367,0,1793 0/0:72,0:72:99:0,202,2407 0/1:63,50:113:99:1428,0,1712 0/1:70,69:140:99:1954,0,1878 0/0:138,0:138:99:0,379,4540 0/0:103,0:103:99:0,286,3371 0/0:203,0:203:99:0,557,6779 0/1:70,71:141:99:2203,0,1889 1/1:1,133:134:99:4599,306,0 0/0:111,0:111:99:0,304,3638 0/0:88,0:88:99:0,256,3030 0/1:57,67:124:99:1996,0,1534 0/0:81,0:81:99:0,223,2644 0/1:59,59:118:99:1797,0,1612 0/0:92,0:92:99:0,253,3029 0/0:113,0:113:99:0,301,3684 1/1:1,95:96:99:3183,219,0 0/0:98,0:98:99:0,268,3203 0/1:43,46:89:99:1443,0,1198 0/0:118,0:118:99:0,334,3986 0/1:56,51:107:99:1539,0,1437 0/1:62,44:107:99:1304,0,1698 0/0:112,1:114:99:0,282,3692 0/0:115,0:115:99:0,325,3887 0/0:91,0:91:99:0,256,3023 0/0:94,0:94:99:0,256,3059 11 134119810 . C G 57.30 . AC=4;AF=0.048;AN=84;BaseQRankSum=-11.656;DP=3935;DS;Dels=0.00;FS=24.866;HRun=1;HaplotypeScore=3.0879;InbreedingCoeff=-0.0506;MQ=59.16;MQ0=0;MQRankSum=0.547;QD=0.18;ReadPosRankSum=-7.560 GT:AD:DP:GQ:PL 0/0:41,12:53:66.06:0,66,657 0/1:51,17:69:39.58:40,0,876 0/0:61,5:66:99:0,99,997 0/0:143,28:172:99:0,162,2566 0/0:114,20:134:99:0,213,2191 0/0:152,19:171:99:0,227,2943 0/0:107,18:125:99:0,228,2384 0/0:112,11:123:99:0,202,2298 0/0:53,9:62:93.11:0,93,927 0/0:38,8:46:54.06:0,54,529 0/0:49,16:65:31.39:0,31,1002 0/0:46,10:56:90.16:0,90,898 0/0:42,13:55:14.18:0,14,754 0/0:57,16:73:75.49:0,75,982 0/0:138,56:196:56.02:0,56,2407 0/1:45,17:62:19.15:19,0,716 0/0:69,10:79:95.77:0,96,1236 0/0:65,17:83:99:0,126,1255 0/1:86,49:135:61.15:61,0,1451 0/0:120,3:124:99:0,261,2654 0/0:78,31:109:20.82:0,21,1325 0/0:64,13:77:99:0,104,1181 0/0:133,32:165:99:0,206,2597 0/0:103,15:118:99:0,155,2129 0/0:112,19:131:99:0,198,2194 0/0:107,12:119:99:0,189,1939 0/1:42,17:59:23.25:23,0,668 0/0:59,9:68:99:0,120,1205 0/0:48,9:57:52.39:0,52,703 0/0:59,10:69:99:0,111,1092 0/0:46,12:58:21:0,21,720 0/0:135,14:150:99:0,252,2488 0/0:76,13:89:99:0,126,1586 0/0:56,10:66:57.64:0,58,854 0/0:54,13:67:32.38:0,32,979 0/0:60,16:77:61.96:0,62,1114 0/0:85,35:121:19.15:0,19,1464 0/0:58,19:77:74.96:0,75,1014 0/0:49,10:60:99:0,99,975 0/0:69,15:84:75:0,75,1223 0/0:63,17:80:99:0,114,1174 0/0:71,14:85:99:0,116,1526 11 134119810 . C CG 22.79 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.836;DP=3933;DS;FS=46.672;HRun=1;HaplotypeScore=328.3429;InbreedingCoeff=-0.0431;MQ=59.05;MQ0=0;MQRankSum=0.069;QD=0.11;ReadPosRankSum=-20.580 GT:AD:DP:GQ:PL 0/0:52,0:52:50.22:0,50,777 0/1:68,0:68:18.97:19,0,1144 0/0:58,10:68:95.18:0,95,1272 0/0:169,0:169:99:0,240,3725 0/0:133,0:133:99:0,205,2993 0/0:172,0:164:99:0,303,4078 0/0:127,0:124:99:0,241,3379 0/0:125,0:118:99:0,269,3269 0/0:58,0:58:99:0,113,1369 0/0:47,0:47:77.58:0,78,908 0/0:65,0:65:44.30:0,44,1287 0/0:56,0:56:95.31:0,95,1270 0/0:54,0:54:18.37:0,18,956 0/0:73,0:73:99:0,125,1556 0/0:196,0:196:93.83:0,94,3115 0/0:64,0:64:0.17:14,0,1075 0/0:79,0:79:99:0,108,1545 0/0:84,0:84:96.85:0,97,1655 0/1:135,1:136:70.17:70,0,1647 0/0:115,11:126:99:0,236,3339 0/0:117,0:117:44.57:0,45,1851 0/0:77,0:77:99:0,120,1651 0/0:167,0:167:99:0,264,3788 0/0:114,0:110:99:0,194,2895 0/0:132,0:125:99:0,235,3108 0/0:120,0:114:99:0,264,3194 0/0:57,0:57:0.20:0,0,1084 0/0:66,0:66:99:0,128,1451 0/0:59,0:59:80.76:0,81,1157 0/0:69,0:69:99:0,116,1506 0/0:57,0:57:67.44:0,67,1319 0/0:143,0:143:99:0,312,3803 0/0:89,0:89:99:0,117,2199 0/0:64,0:64:80.05:0,80,1180 0/0:66,0:66:56.22:0,56,1367 0/0:76,0:76:98.13:0,98,1614 0/0:117,0:117:16.40:0,16,1470 0/0:77,0:77:99:0,112,1578 0/0:66,0:66:99:0,105,1418 0/0:83,0:83:93.83:0,94,1571 0/0:80,0:80:99:0,133,1764 0/0:85,0:85:99:0,133,1984 11 134147600 . T C 174.03 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.132;DP=665;Dels=0.00;FS=5.791;HRun=0;HaplotypeScore=0.3712;InbreedingCoeff=-0.0127;MQ=58.66;MQ0=0;MQRankSum=0.537;QD=9.67;ReadPosRankSum=-1.911 GT:AD:DP:GQ:PL 0/0:24,0:24:66.18:0,66,797 0/0:15,0:15:42.13:0,42,510 0/0:14,0:14:42.10:0,42,477 0/0:18,0:18:48.15:0,48,588 0/0:21,0:21:57.18:0,57,709 0/0:15,0:15:39.12:0,39,489 0/0:9,0:9:24.07:0,24,290 0/0:12,0:12:36.11:0,36,445 0/0:13,0:13:39.12:0,39,462 0/0:12,0:12:30.09:0,30,366 0/0:11,0:11:33.10:0,33,391 0/0:17,0:17:48.15:0,48,588 0/0:8,0:8:24.07:0,24,290 0/1:10,8:18:99:220,0,312 0/0:41,0:42:99:0,108,1304 0/0:9,0:9:27.08:0,27,319 0/0:5,0:5:15.04:0,15,174 0/0:16,0:17:45.14:0,45,547 0/0:27,0:27:69.21:0,69,867 0/0:29,0:29:78.24:0,78,960 0/0:29,1:30:84.25:0,84,1020 0/0:16,0:16:42.13:0,42,510 0/0:11,0:11:30.09:0,30,357 0/0:12,0:12:33.10:0,33,407 0/0:17,0:17:45.13:0,45,559 0/0:9,0:9:24.07:0,24,297 0/0:12,0:12:33.10:0,33,402 0/0:10,0:10:30.09:0,30,360 0/0:13,0:13:33.10:0,33,410 0/0:16,0:16:42.12:0,42,505 0/0:9,0:9:27.06:0,27,310 0/0:30,0:30:72.21:0,72,905 0/0:13,0:13:36.11:0,36,436 0/0:15,0:15:45.13:0,45,529 0/0:10,0:10:30.09:0,30,359 0/0:9,0:9:27.08:0,27,321 0/0:29,0:29:72.22:0,72,892 0/0:12,0:12:33.10:0,33,379 0/0:13,0:13:36.11:0,36,443 0/0:16,0:16:48.15:0,48,578 0/0:12,0:12:33.10:0,33,399 0/0:15,0:15:45.13:0,45,523 11 134158745 . A G 4097.67 . AC=15;AF=0.179;AN=84;BaseQRankSum=5.213;DP=1436;Dels=0.00;FS=257.424;HRun=0;HaplotypeScore=1.9106;InbreedingCoeff=-0.2168;MQ=59.24;MQ0=0;MQRankSum=2.009;QD=9.29;ReadPosRankSum=0.651 GT:AD:DP:GQ:PL 0/1:18,7:29:99:172,0,548 0/1:20,9:34:99:196,0,572 0/1:11,9:24:99:252,0,255 0/1:15,25:46:99:806,0,385 0/0:55,0:55:99:0,132,1588 0/0:33,0:33:78.23:0,78,976 0/1:15,6:22:99:134,0,380 0/0:37,0:37:96.23:0,96,1126 0/1:12,10:28:99:283,0,307 0/1:1,3:4:24.09:95,0,24 0/0:26,0:26:72.17:0,72,823 0/0:41,0:41:99:0,105,1253 0/0:26,0:26:69.19:0,69,823 0/0:26,0:26:66.19:0,66,774 0/0:89,0:93:99:0,220,2558 0/0:27,0:27:66.20:0,66,808 0/0:35,0:35:90.25:0,90,1069 0/0:30,0:33:87.24:0,87,1015 0/0:42,0:42:99:0,108,1282 0/0:64,0:64:99:0,159,1898 0/0:50,0:51:99:0,129,1534 0/0:30,0:31:84.22:0,84,984 0/1:25,17:50:99:523,0,644 0/1:14,9:27:99:285,0,399 0/1:13,7:28:99:208,0,330 0/0:32,1:34:38.23:0,38,906 0/0:21,0:21:57.14:0,57,662 0/0:36,0:36:93.26:0,93,1109 0/0:31,0:31:81.24:0,81,983 0/0:28,0:28:72.21:0,72,854 0/0:16,0:16:45.13:0,45,527 0/0:44,0:44:99:0,102,1275 0/0:44,0:45:99:0,117,1400 0/0:31,0:31:87.22:0,87,1008 0/0:24,0:24:63.18:0,63,735 0/0:38,0:38:87.25:0,87,1044 0/1:22,13:44:99:323,0,550 0/1:20,8:32:99:218,0,511 0/1:12,7:20:99:155,0,359 0/1:13,9:23:99:260,0,307 0/1:17,8:30:99:188,0,470 0/0:26,0:27:72.21:0,72,851 12 234933 . C T 67.90 . AC=2;AF=0.027;AN=74;BaseQRankSum=2.312;DP=134;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0861;InbreedingCoeff=-0.1034;MQ=57.74;MQ0=0;MQRankSum=0.431;QD=9.70;ReadPosRankSum=-0.502 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,66 0/0:1,0:1:3.01:0,3,32 0/0:1,0:1:3.01:0,3,32 0/0:7,0:7:18.05:0,18,213 0/0:1,0:1:3.01:0,3,31 ./. 0/1:1,3:4:13.66:100,0,14 0/1:2,1:3:27.10:27,0,59 0/0:5,0:5:12.03:0,12,132 0/0:2,0:2:6.01:0,6,61 0/0:3,0:3:9.02:0,9,98 0/0:3,0:3:9.03:0,9,104 0/0:4,0:4:12.02:0,12,125 0/0:8,0:8:21.04:0,21,226 0/0:5,0:5:15.03:0,15,157 0/0:4,0:4:12.03:0,12,131 0/0:5,0:5:12.03:0,12,131 0/0:2,0:2:6.01:0,6,57 0/0:3,0:3:3.01:0,3,37 0/0:6,0:6:18.02:0,18,182 0/0:5,0:5:15.04:0,15,165 0/0:2,0:2:2.98:0,3,22 0/0:5,0:5:9.03:0,9,113 ./. 0/0:1,0:1:3.01:0,3,34 0/0:2,0:2:6.02:0,6,69 0/0:1,0:1:3:0,3,29 0/0:1,0:1:2.99:0,3,23 ./. 0/0:4,0:4:9.02:0,9,99 0/0:1,0:1:3.01:0,3,32 0/0:7,0:7:21.05:0,21,230 0/0:5,0:5:12.03:0,12,137 0/0:1,0:1:3.01:0,3,32 0/0:2,0:3:6.02:0,6,77 0/0:5,0:6:15.04:0,15,175 ./. 0/0:8,0:8:18.04:0,18,209 0/0:1,0:1:3.01:0,3,32 ./. 0/0:4,0:4:9.03:0,9,105 0/0:4,0:4:9.01:0,9,91 12 235022 . C T 2714.96 . AC=68;AF=1.000;AN=68;DP=90;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0464;InbreedingCoeff=-0.1203;MQ=58.07;MQ0=0;QD=30.51 GT:AD:DP:GQ:PL 1/1:0,3:3:9.03:106,9,0 1/1:0,1:1:3.01:39,3,0 1/1:0,1:1:3.01:38,3,0 1/1:0,5:5:9.03:124,9,0 1/1:0,2:2:3.01:37,3,0 1/1:0,2:2:6.02:74,6,0 1/1:0,1:1:3.01:37,3,0 ./. 1/1:0,3:3:9.02:98,9,0 ./. 1/1:0,4:4:9.01:93,9,0 ./. 1/1:0,1:1:3.01:32,3,0 1/1:0,1:1:3.01:39,3,0 1/1:0,3:3:9.03:109,9,0 1/1:0,5:5:12.04:149,12,0 1/1:0,1:1:3.01:34,3,0 1/1:0,2:2:3.01:39,3,0 1/1:0,1:1:3.01:36,3,0 1/1:0,8:8:24.07:279,24,0 1/1:0,2:2:6.02:71,6,0 1/1:0,6:6:12.04:149,12,0 1/1:0,1:1:3.01:39,3,0 ./. ./. ./. 1/1:0,1:1:3.01:35,3,0 1/1:0,2:2:6.02:72,6,0 ./. 1/1:1,3:4:6.02:78,6,0 1/1:0,3:3:9.03:108,9,0 1/1:1,1:2:3.01:37,3,0 1/1:0,4:4:12.04:150,12,0 1/1:0,1:1:3.01:36,3,0 1/1:1,2:3:6.02:71,6,0 1/1:0,3:3:6.02:70,6,0 1/1:0,5:5:15.05:189,15,0 1/1:0,2:2:6.02:72,6,0 1/1:0,1:1:3.01:38,3,0 ./. 1/1:0,1:1:3.01:35,3,0 1/1:0,4:4:12.04:148,12,0 12 235028 . G A 119.93 . AC=1;AF=0.016;AN=64;BaseQRankSum=2.415;DP=99;Dels=0.00;FS=1.915;HRun=0;HaplotypeScore=0.1039;InbreedingCoeff=-0.1216;MQ=57.57;MQ0=0;MQRankSum=0.162;QD=17.13;ReadPosRankSum=-0.469 GT:AD:DP:GQ:PL 0/0:2,0:3:6.02:0,6,69 0/0:2,0:2:6.01:0,6,63 ./. 0/0:5,0:5:9.03:0,9,128 0/0:2,0:2:6.01:0,6,61 0/0:2,0:2:6.02:0,6,75 0/0:2,0:2:6.02:0,6,73 ./. 0/0:3,0:3:9.01:0,9,90 ./. 0/0:5,0:5:12.03:0,12,139 0/0:2,0:2:6.01:0,6,65 ./. 0/0:1,0:1:3.01:0,3,32 0/0:3,0:3:6.02:0,6,77 0/0:5,0:5:12.02:0,12,136 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:3.01:0,3,45 0/0:1,0:2:3.01:0,3,35 0/1:2,5:7:38.06:164,0,38 0/0:5,0:5:9.02:0,9,95 0/0:6,0:6:12.03:0,12,148 0/0:1,0:1:3.01:0,3,38 ./. ./. ./. 0/0:2,0:2:6:0,6,63 0/0:3,0:3:9.02:0,9,100 ./. 0/0:3,0:4:6.02:0,6,77 0/0:1,0:1:3.01:0,3,33 ./. 0/0:4,0:4:12.03:0,12,132 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:6.02:0,6,71 0/0:5,0:5:9.02:0,9,98 0/0:4,0:4:12:0,12,113 0/0:2,0:2:6.02:0,6,71 0/0:2,0:2:6.02:0,6,65 ./. 0/0:1,0:1:3:0,3,28 0/0:4,0:4:12.03:0,12,129 12 266266 . T C 475.72 . AC=3;AF=0.036;AN=84;BaseQRankSum=-2.308;DP=615;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2607;InbreedingCoeff=-0.0399;MQ=58.88;MQ0=0;MQRankSum=0.168;QD=11.89;ReadPosRankSum=0.396 GT:AD:DP:GQ:PL 0/0:9,0:9:27.08:0,27,326 0/0:8,0:8:24.07:0,24,281 0/1:2,4:6:55.91:117,0,56 0/0:14,0:14:39.12:0,39,479 0/0:15,0:15:42.13:0,42,522 0/0:11,0:11:30.09:0,30,381 0/0:11,0:11:33.10:0,33,409 0/0:6,0:6:15.05:0,15,195 0/0:13,0:13:36.11:0,36,442 0/0:13,0:13:39.11:0,39,454 0/0:4,0:4:12.04:0,12,146 0/0:9,0:9:24.07:0,24,292 0/0:15,0:15:45.13:0,45,529 0/0:16,0:16:39.12:0,39,473 0/0:73,0:73:99:0,153,1968 0/0:6,0:6:15.05:0,15,189 0/0:22,0:22:54.17:0,54,669 0/0:13,0:13:39.12:0,39,461 0/0:16,0:16:45.14:0,45,535 0/0:22,0:22:60.18:0,60,733 0/1:11,9:20:99:215,0,326 0/1:5,9:14:99:219,0,139 0/0:24,0:24:66.20:0,66,814 0/0:5,0:5:12.04:0,12,156 0/0:22,0:22:57.17:0,57,703 0/0:10,0:10:30.09:0,30,370 0/0:10,0:10:30.09:0,30,369 0/0:11,0:11:27.08:0,27,333 0/0:14,0:14:36.08:0,36,429 0/0:8,0:8:18.05:0,18,226 0/0:12,0:12:33.10:0,33,409 0/0:23,0:24:60.18:0,60,736 0/0:18,0:18:45.14:0,45,561 0/0:12,0:12:33.10:0,33,404 0/0:14,0:14:39.12:0,39,478 0/0:11,0:11:27.08:0,27,334 0/0:30,0:30:78.24:0,78,967 0/0:12,0:12:33.10:0,33,403 0/0:11,0:11:30.09:0,30,365 0/0:11,0:11:33.10:0,33,400 0/0:7,0:7:21.06:0,21,252 0/0:13,0:13:36.11:0,36,445 12 272669 . G A 1046.80 . AC=2;AF=0.024;AN=84;BaseQRankSum=6.789;DP=1988;Dels=0.00;FS=4.832;HRun=0;HaplotypeScore=1.7540;InbreedingCoeff=-0.0244;MQ=58.60;MQ0=0;MQRankSum=-0.883;QD=16.62;ReadPosRankSum=1.214 GT:AD:DP:GQ:PL 0/0:33,0:33:93.20:0,93,977 0/0:34,0:34:99:0,99,1077 0/0:34,0:34:93.19:0,93,987 0/0:90,0:90:99:0,265,3016 0/0:76,0:76:99:0,220,2555 0/0:50,0:50:99:0,144,1652 0/0:48,0:48:99:0,138,1611 0/0:55,0:55:99:0,159,1856 0/0:39,0:39:99:0,114,1242 0/0:37,0:37:99:0,99,1064 0/0:35,0:35:99:0,99,1041 0/1:11,16:27:99:465,0,259 0/0:29,0:29:87.19:0,87,920 0/1:14,22:36:99:644,0,275 0/0:111,0:111:99:0,307,3320 0/0:42,0:42:99:0,117,1261 0/0:43,0:43:99:0,123,1314 0/0:31,0:31:90.11:0,90,921 0/0:59,0:59:99:0,171,1791 0/0:72,0:72:99:0,201,2156 0/0:66,0:66:99:0,186,2044 0/0:53,0:53:99:0,153,1649 0/0:104,0:104:99:0,292,3445 0/0:39,0:39:99:0,117,1345 0/0:49,0:49:99:0,144,1677 0/0:51,0:51:99:0,144,1667 0/0:27,0:27:78.19:0,78,848 0/0:33,0:33:90.20:0,90,949 0/0:34,0:34:99:0,99,1051 0/0:37,0:37:99:0,108,1162 0/0:40,0:40:99:0,108,1186 0/0:66,0:66:99:0,183,1944 0/0:63,0:63:99:0,171,1867 0/0:43,0:43:99:0,123,1314 0/0:30,0:30:87.18:0,87,922 0/0:37,0:37:99:0,102,1109 0/0:64,0:64:99:0,183,1993 0/0:39,0:39:99:0,108,1153 0/0:41,0:41:99:0,120,1267 0/0:26,0:26:75.18:0,75,807 0/0:38,0:38:99:0,111,1182 0/0:27,0:27:78.18:0,78,824 12 274647 . T C 56881.73 . AC=25;AF=0.298;AN=84;BaseQRankSum=30.826;DP=6636;DS;Dels=0.00;FS=1.930;HRun=0;HaplotypeScore=2.7032;InbreedingCoeff=0.0319;MQ=59.38;MQ0=0;MQRankSum=2.556;QD=17.44;ReadPosRankSum=-2.432 GT:AD:DP:GQ:PL 1/1:0,123:123:99:4336,337,0 0/1:52,64:116:99:1938,0,1414 0/0:101,0:101:99:0,277,3416 0/1:126,114:240:99:3273,0,3510 0/1:116,119:235:99:3533,0,3253 0/0:246,0:246:99:0,614,8110 0/0:195,0:195:99:0,500,6535 0/0:242,0:242:99:0,614,7939 0/1:64,71:135:99:2073,0,1833 0/0:125,1:126:99:0,300,4111 1/1:0,137:137:99:4767,370,0 0/0:125,0:125:99:0,340,4227 0/0:113,3:117:99:0,214,3578 0/0:114,0:114:99:0,310,3875 0/0:230,0:231:99:0,629,7648 0/0:123,0:123:99:0,337,4163 0/1:58,56:114:99:1656,0,1759 0/0:114,0:114:99:0,316,3866 0/0:219,0:219:99:0,581,7220 0/1:117,124:241:99:3472,0,3244 0/1:111,108:219:99:3060,0,3062 0/1:53,69:123:99:2032,0,1384 0/0:250,0:250:99:0,653,8296 0/1:131,104:236:99:3038,0,3747 0/0:242,0:242:99:0,629,8106 0/1:94,111:205:99:3130,0,2753 1/1:0,82:82:99:2794,217,0 1/1:0,127:128:99:4241,328,0 0/1:46,43:89:99:1179,0,1411 0/1:76,63:139:99:1787,0,2189 0/1:51,63:114:99:2009,0,1315 0/1:105,102:208:99:2943,0,2960 0/1:59,74:134:99:2097,0,1533 0/0:118,0:118:99:0,319,3977 0/0:122,0:122:99:0,334,4140 0/0:121,0:121:99:0,334,4141 0/0:216,0:216:99:0,545,6850 0/0:120,0:120:99:0,331,4042 0/0:110,0:110:99:0,307,3803 0/1:69,66:135:99:1927,0,1985 0/1:56,53:109:99:1597,0,1583 0/0:122,0:122:99:0,337,4207 12 307097 . T TG 336.58 . AC=11;AF=0.131;AN=84;BaseQRankSum=-3.509;DP=2196;FS=815.796;HRun=1;HaplotypeScore=174.9435;InbreedingCoeff=-0.1899;MQ=58.90;MQ0=1;MQRankSum=4.422;QD=0.50;ReadPosRankSum=-13.017 GT:AD:DP:GQ:PL 0/1:27,0:27:9.63:10,0,513 0/0:49,0:49:81.46:0,81,957 0/0:31,0:31:11.17:0,11,580 0/1:114,1:115:45.08:45,0,1634 0/1:78,26:104:52.12:52,0,1498 0/1:50,9:58:70.40:70,0,796 0/0:58,0:58:79.55:0,80,981 0/0:68,0:67:61.28:0,61,1000 0/0:38,0:38:0.28:0,0,694 0/0:41,0:41:56.29:0,56,735 0/0:41,0:41:0.07:0,0,701 0/0:50,0:50:61.11:0,61,914 0/0:24,10:34:5.12:0,5,453 0/0:36,0:36:37.32:0,37,717 0/0:119,29:147:56.09:0,56,2901 0/0:35,0:35:47.17:0,47,745 0/1:46,13:59:36.01:36,0,830 0/0:36,0:36:20.56:0,21,541 0/0:30,8:39:15.57:0,16,696 0/0:62,0:62:37.27:0,37,1332 0/1:40,11:51:45.33:45,0,1165 0/0:38,0:38:5.03:0,5,705 0/1:119,0:119:99:109,0,1766 0/0:69,0:68:41.21:0,41,1082 0/0:82,0:82:39.32:0,39,1278 0/0:48,0:48:34.65:0,35,747 0/0:26,0:26:10.51:0,11,412 0/0:34,9:43:1.46:4,0,798 0/0:25,0:25:40.88:0,41,612 0/0:44,0:44:32.02:0,32,735 0/0:34,0:34:8.35:0,8,531 0/0:55,0:55:64.59:0,65,1122 0/0:42,0:42:78.32:0,78,847 0/0:44,0:44:10.48:0,10,747 0/1:22,4:27:26.05:26,0,462 0/1:34,0:34:53.83:54,0,385 0/0:52,6:58:53.07:0,53,1410 0/0:47,0:47:40.87:0,41,853 0/0:50,0:50:61.22:0,61,917 0/1:42,0:42:22.08:22,0,778 0/0:50,0:50:6.15:0,6,744 0/1:37,1:38:4.76:5,0,598 12 307099 . C G 7.16 . AC=3;AF=0.036;AN=84;BaseQRankSum=-13.126;DP=1879;Dels=0.00;FS=293.786;HRun=1;HaplotypeScore=2.8964;InbreedingCoeff=-0.0705;MQ=58.89;MQ0=1;MQRankSum=0.361;QD=0.08;ReadPosRankSum=-10.700 GT:AD:DP:GQ:PL 0/1:18,6:24:31.80:32,0,454 0/0:36,4:40:72.22:0,72,895 0/0:19,6:25:16.80:0,17,559 0/0:62,32:94:23.79:0,24,1625 0/0:81,2:83:99:0,153,1882 0/0:43,5:48:84.27:0,84,1101 0/0:43,10:53:87.22:0,87,1064 0/0:45,14:59:67.57:0,68,1091 0/1:26,7:33:18.71:19,0,630 0/0:27,6:34:41.79:0,42,833 0/0:27,10:38:2.44:0,2,682 0/0:33,7:40:90.24:0,90,1071 0/0:26,2:28:60.14:0,60,693 0/0:30,3:33:36.55:0,37,725 0/0:114,8:123:99:0,277,3310 0/0:26,4:30:43.48:0,43,755 0/0:43,3:47:81.19:0,81,942 0/0:24,8:32:32.48:0,32,612 0/0:30,1:31:75.16:0,75,886 0/0:45,12:57:73.18:0,73,1077 0/0:42,3:45:99:0,102,1172 0/0:28,9:37:59.27:0,59,742 0/0:63,44:107:28.50:0,29,1865 0/0:42,12:54:75.56:0,76,1168 0/0:51,21:72:85.81:0,86,1325 0/0:29,14:43:66.20:0,66,830 0/0:16,6:22:4.53:0,5,348 0/0:31,4:35:72.16:0,72,844 0/0:23,3:26:54.15:0,54,634 0/0:27,11:38:66.65:0,67,782 0/0:23,9:32:2.93:0,0,522 0/0:44,7:51:92.47:0,92,1107 0/0:29,6:35:57.11:0,57,670 0/0:28,5:33:36.44:0,36,706 0/0:23,2:25:45.12:0,45,551 0/1:19,9:28:28.16:28,0,503 0/0:46,2:48:99:0,114,1421 0/0:32,7:39:24.80:0,25,768 0/0:32,12:44:84.16:0,84,951 0/0:27,9:36:1.57:4,0,822 0/0:32,11:43:10.63:0,11,647 0/0:22,12:34:2.15:2,0,520 12 332362 . C T 16652.24 . AC=22;AF=0.262;AN=84;BaseQRankSum=18.919;DP=2193;Dels=0.00;FS=9.977;HRun=0;HaplotypeScore=1.3119;InbreedingCoeff=0.2610;MQ=59.39;MQ0=0;MQRankSum=1.477;QD=18.24;ReadPosRankSum=2.235 GT:AD:DP:GQ:PL 0/1:19,16:35:99:482,0,496 0/1:26,18:44:99:479,0,725 1/1:0,24:24:63.20:781,63,0 0/1:47,48:95:99:1235,0,1259 1/1:1,68:69:99:2383,157,0 0/0:64,0:64:99:0,180,2142 0/0:55,0:55:99:0,141,1769 0/0:72,0:72:99:0,196,2387 0/1:29,24:53:99:655,0,705 0/0:31,0:31:87.22:0,87,967 1/1:0,44:44:99:1476,117,0 0/1:20,25:45:99:700,0,554 0/1:16,21:37:99:666,0,397 0/0:44,0:44:99:0,120,1349 0/1:82,47:129:99:1224,0,2006 0/0:33,0:33:96.24:0,96,1072 0/1:25,18:43:99:457,0,630 0/0:31,0:31:84.20:0,84,947 0/0:78,0:78:99:0,199,2332 0/0:63,0:63:99:0,171,1989 0/0:74,0:75:99:0,190,2223 0/0:39,0:39:99:0,114,1259 0/0:93,0:93:99:0,241,2988 1/1:0,38:38:99:1256,99,0 1/1:0,58:58:99:1964,156,0 0/1:35,30:65:99:903,0,918 0/0:35,0:35:93.25:0,93,1070 0/0:50,0:50:99:0,126,1474 0/1:13,25:38:99:728,0,251 0/0:50,0:50:99:0,120,1415 0/0:38,0:38:99:0,99,1141 0/1:29,39:68:99:1078,0,738 0/0:49,0:49:99:0,129,1465 0/0:28,0:28:81.23:0,81,949 0/0:32,0:32:87.24:0,87,989 0/0:58,0:58:99:0,150,1760 0/0:84,0:84:99:0,205,2392 0/0:46,0:46:99:0,117,1333 0/0:41,0:41:99:0,102,1204 0/0:53,0:53:99:0,144,1613 0/1:19,9:28:99:186,0,526 0/0:38,0:38:99:0,111,1236 12 369076 . T C 988.34 . AC=6;AF=0.071;AN=84;BaseQRankSum=-37.253;DP=7750;DS;Dels=0.00;FS=3200.000;HRun=4;HaplotypeScore=3.7993;InbreedingCoeff=-0.0978;MQ=59.39;MQ0=0;MQRankSum=-0.008;QD=0.97;ReadPosRankSum=-36.405 GT:AD:DP:GQ:PL 0/0:127,48:176:99:0,139,4038 0/0:99,47:147:95.96:0,96,2884 0/0:108,46:154:12.41:0,12,3130 0/1:161,89:250:98.18:98,0,5228 0/0:185,64:250:99:0,215,6405 0/0:187,62:250:99:0,372,6429 0/0:182,56:239:99:0,276,5892 0/0:174,67:241:99:0,307,5956 0/0:114,42:156:99:0,200,3659 0/0:114,51:165:98.02:0,98,3282 0/0:112,45:157:99:0,229,3638 0/0:97,37:135:99:0,163,3077 0/0:92,28:121:99:0,149,2994 0/0:111,45:156:99:0,133,3504 0/1:99,150:250:99:775,0,2643 0/1:80,38:118:37.33:37,0,2445 0/0:146,59:205:89.83:0,90,4258 0/0:107,32:139:99:0,169,3516 0/0:180,69:250:1.22:5,0,5466 0/0:184,66:250:99:0,266,5482 0/0:178,71:249:90.29:0,90,5336 0/0:135,31:166:99:0,278,4178 0/0:141,109:250:30.03:0,30,4587 0/0:154,45:201:99:0,276,5183 0/0:187,57:246:99:0,407,6428 0/0:174,60:234:99:0,419,6164 0/1:65,38:103:41.60:42,0,1998 0/0:109,47:156:1.28:5,0,3375 0/0:123,38:161:99:0,174,3823 0/1:95,44:139:99:125,0,2663 0/0:95,43:139:41.62:0,42,2998 0/0:182,68:250:99:0,256,5467 0/0:137,39:176:99:0,321,4348 0/0:106,44:150:36.02:0,36,3287 0/0:113,44:157:97.29:0,97,3572 0/1:111,49:160:11.27:11,0,3171 0/0:182,67:250:63.44:0,63,5620 0/0:106,42:149:99:0,149,3425 0/0:111,46:157:99:0,162,3456 0/0:107,42:149:40.88:0,41,3207 0/0:107,39:146:99:0,188,3446 0/0:106,47:153:37.48:0,37,3220 12 498270 . G C 12.55 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.784;DP=390;Dels=0.01;FS=2.064;HRun=0;HaplotypeScore=1.8892;InbreedingCoeff=-0.0658;MQ=48.08;MQ0=0;MQRankSum=0.119;QD=1.57;ReadPosRankSum=-0.286 GT:AD:DP:GQ:PL 0/0:5,0:5:6.02:0,6,68 0/0:3,0:3:3.01:0,3,32 0/0:4,1:5:0.19:14,0,122 0/0:19,0:19:36.10:0,36,417 0/0:25,0:25:48.12:0,48,538 0/0:10,0:10:18.05:0,18,209 0/0:11,0:11:18.06:0,18,230 0/0:11,0:11:18.05:0,18,216 0/0:12,0:12:30.08:0,30,355 0/0:6,0:6:12.03:0,12,137 0/0:7,0:7:6.02:0,6,67 0/0:7,1:8:15.04:0,15,177 0/0:4,0:4:6.02:0,6,67 0/0:8,0:8:15.04:0,15,177 0/0:15,1:16:21.06:0,21,235 0/0:7,0:7:15.04:0,15,165 0/0:11,0:11:15.04:0,15,169 0/0:7,0:7:18.06:0,18,223 0/0:10,0:10:15.04:0,15,162 0/0:14,0:14:24.06:0,24,279 0/0:6,0:6:15.04:0,15,174 0/0:12,0:12:18.05:0,18,213 0/0:20,0:20:33.09:0,33,383 0/0:6,0:6:9.02:0,9,96 0/0:12,1:13:18.06:0,18,219 0/0:7,1:8:15.04:0,15,180 0/0:4,0:4:6.02:0,6,66 0/0:6,0:6:12.04:0,12,147 0/0:7,0:7:21.05:0,21,234 0/0:3,0:3:6.01:0,6,68 0/0:9,0:9:15.05:0,15,183 0/0:12,0:12:21.04:0,21,239 0/1:5,3:8:54.83:55,0,64 0/0:5,0:5:6.02:0,6,66 0/0:4,0:4:12.03:0,12,134 0/0:14,0:14:21.06:0,21,246 0/0:10,1:11:0.39:10,0,222 0/0:9,0:9:21.06:0,21,236 0/0:7,0:7:15.04:0,15,163 0/0:6,0:6:18.05:0,18,211 0/0:6,0:6:12.04:0,12,142 0/0:11,0:11:18.05:0,18,207 12 498281 . G C 4.77 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.531;DP=434;Dels=0.01;FS=6.320;HRun=0;HaplotypeScore=1.2764;InbreedingCoeff=-0.0473;MQ=50.85;MQ0=0;MQRankSum=2.557;QD=0.68;ReadPosRankSum=0.042 GT:AD:DP:GQ:PL 0/0:5,0:5:12.03:0,12,136 0/0:3,0:3:9.03:0,9,111 0/0:7,0:7:21.06:0,21,247 0/0:23,0:24:54.16:0,54,650 0/0:22,0:22:51.13:0,51,605 0/0:12,0:12:24.05:0,24,264 0/0:10,1:11:0.97:6,0,301 0/0:13,0:13:36.07:0,36,405 0/0:6,0:6:15.04:0,15,172 0/0:10,0:10:30.05:0,30,328 0/0:13,0:13:36.11:0,36,436 0/0:6,0:6:15.04:0,15,176 0/0:7,0:7:18.06:0,18,219 0/0:7,0:7:15.03:0,15,173 0/0:20,0:20:48.14:0,48,575 0/0:8,0:8:24.07:0,24,296 0/0:10,0:10:24.07:0,24,293 0/0:3,0:3:9.03:0,9,113 0/0:12,0:12:24.07:0,24,272 0/0:17,0:17:42.12:0,42,497 0/0:13,0:13:27.08:0,27,324 0/0:11,0:11:24.05:0,24,265 0/0:20,0:20:54.17:0,54,676 0/0:11,0:11:27.06:0,27,305 0/0:10,0:10:24.06:0,24,285 0/0:11,0:11:21.07:0,21,267 0/0:3,0:3:3:0,3,29 0/1:4,3:7:46.96:47,0,112 0/0:4,0:5:9.03:0,9,106 0/0:5,0:5:15.05:0,15,179 0/0:9,1:10:24.07:0,24,275 0/0:23,0:23:48.14:0,48,562 0/0:12,0:12:30.07:0,30,341 0/0:7,0:7:21.06:0,21,246 0/0:6,0:6:15.02:0,15,154 0/0:14,0:14:33.08:0,33,391 0/0:10,0:10:30.07:0,30,337 0/0:5,1:6:0.24:13,0,149 0/0:10,0:10:30.08:0,30,355 0/0:7,0:7:18.05:0,18,216 0/0:4,0:4:9.02:0,9,105 0/0:10,0:10:24.03:0,24,254 12 655868 . C A 6.59 . AC=3;AF=0.050;AN=60;BaseQRankSum=-2.977;DP=100;Dels=0.00;FS=5.834;HRun=2;HaplotypeScore=0.1393;InbreedingCoeff=-0.1608;MQ=57.98;MQ0=0;MQRankSum=0.540;QD=0.66;ReadPosRankSum=-0.952 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,67 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,39 ./. 0/0:1,0:1:3.01:0,3,42 ./. ./. 0/0:2,0:2:3.01:0,3,45 0/0:3,0:3:9.03:0,9,110 ./. 0/0:2,0:2:6:0,6,55 0/1:2,1:3:25.33:25,0,60 ./. ./. 0/0:11,1:12:21.07:0,21,266 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.03:0,9,105 ./. 0/0:8,1:9:24.07:0,24,285 0/0:6,0:6:15.04:0,15,170 0/0:2,1:3:6.02:0,6,78 0/0:3,0:3:6.02:0,6,75 ./. ./. ./. ./. 0/0:3,0:4:9.03:0,9,109 0/0:3,0:3:9.02:0,9,97 0/0:2,0:2:3.01:0,3,38 0/0:2,1:3:6.02:0,6,73 0/0:2,0:2:6.01:0,6,58 0/0:3,1:4:9.03:0,9,111 0/0:5,0:5:9.03:0,9,123 0/0:4,0:4:6:0,6,54 0/0:1,0:1:3.01:0,3,39 0/0:4,0:4:9.03:0,9,117 0/1:3,1:4:23.47:23,0,68 0/0:1,0:1:3.01:0,3,35 0/0:3,1:4:9.02:0,9,105 0/1:2,1:3:23.47:23,0,62 0/0:2,0:2:3.01:0,3,39 ./. 12 658993 . C T 2425.60 . 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T C 17804.15 . AC=17;AF=0.202;AN=84;BaseQRankSum=0.213;DP=3928;DS;Dels=0.00;FS=11.121;HRun=0;HaplotypeScore=1.6317;InbreedingCoeff=-0.1062;MQ=59.46;MQ0=0;MQRankSum=2.066;QD=13.21;ReadPosRankSum=-2.862 GT:AD:DP:GQ:PL 0/0:82,0:82:99:0,232,2755 0/0:80,0:81:99:0,226,2673 0/0:66,0:66:99:0,184,2132 0/0:130,0:130:99:0,376,4406 0/0:127,0:127:99:0,367,4359 0/0:131,0:131:99:0,367,4496 0/0:118,0:118:99:0,334,4067 0/0:153,0:153:99:0,424,5184 0/0:92,0:92:99:0,253,2981 0/1:32,32:64:99:843,0,897 0/0:78,0:79:99:0,226,2626 0/0:61,0:62:99:0,171,2004 0/0:77,0:77:99:0,220,2597 0/0:81,0:81:99:0,217,2550 0/0:228,0:228:99:0,617,7146 0/0:64,0:65:99:0,184,2181 0/0:96,0:96:99:0,265,3133 0/0:91,0:91:99:0,262,3071 0/1:51,40:91:99:1136,0,1462 0/1:46,43:89:99:1119,0,1297 0/1:50,46:96:99:1166,0,1414 0/1:28,32:60:99:756,0,762 0/0:174,0:174:99:0,484,5784 0/1:65,45:110:99:1262,0,1894 0/1:64,52:116:99:1531,0,1800 0/1:73,58:131:99:1548,0,2105 0/1:25,28:53:99:737,0,649 0/1:50,36:86:99:900,0,1424 0/0:75,0:75:99:0,208,2483 0/0:90,0:91:99:0,250,2996 0/0:68,0:68:99:0,205,2416 0/0:108,0:108:99:0,283,3442 0/0:67,0:67:99:0,190,2230 1/1:0,79:80:99:2643,232,0 0/1:40,25:65:99:674,0,1137 0/1:38,30:70:99:813,0,1040 0/1:37,40:77:99:1008,0,989 0/0:81,0:81:99:0,214,2485 0/1:52,38:91:99:945,0,1441 0/0:73,0:73:99:0,199,2352 0/1:39,29:69:99:723,0,1053 0/0:83,1:84:99:0,211,2704 12 968522 . A G 2242.59 . 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T C 1902.47 . 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G A 68356.29 . 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A C 100731.32 . 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C T 160.25 . AC=1;AF=0.013;AN=76;BaseQRankSum=1.286;DP=128;Dels=0.00;FS=5.448;HRun=0;HaplotypeScore=0.1169;InbreedingCoeff=-0.0972;MQ=59.12;MQ0=0;MQRankSum=-0.235;QD=11.45;ReadPosRankSum=-0.865 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,36 0/0:2,0:2:6.02:0,6,71 0/0:2,0:2:6.02:0,6,69 ./. 0/0:3,0:3:9.03:0,9,106 ./. 0/0:1,0:1:3:0,3,29 ./. 0/0:3,0:3:9.02:0,9,99 0/0:3,0:3:9.03:0,9,116 0/0:2,0:2:6.02:0,6,72 0/0:4,0:4:12.03:0,12,137 0/0:3,0:3:9.03:0,9,109 0/0:4,0:4:12.04:0,12,145 0/1:6,8:14:99:205,0,133 0/0:1,0:1:3.01:0,3,36 0/0:3,0:3:9.02:0,9,95 0/0:2,0:2:6.01:0,6,64 0/0:9,0:9:27.07:0,27,298 0/0:9,0:9:21.06:0,21,261 0/0:3,0:3:9.03:0,9,111 0/0:4,0:5:9.02:0,9,108 0/0:3,0:3:9.03:0,9,116 0/0:1,0:1:3.01:0,3,41 ./. 0/0:1,0:1:3.01:0,3,40 0/0:2,0:2:6.02:0,6,67 0/0:5,0:5:12.03:0,12,134 0/0:3,0:3:9.03:0,9,105 0/0:2,0:2:6.02:0,6,76 0/0:5,0:5:12.04:0,12,154 0/0:3,0:3:9.03:0,9,103 0/0:2,0:2:6.02:0,6,70 0/0:2,0:2:6.01:0,6,62 0/0:1,0:1:3.01:0,3,38 0/0:1,0:1:3.01:0,3,39 0/0:6,0:6:18.05:0,18,215 0/0:4,0:4:12.03:0,12,136 0/0:3,0:3:9.03:0,9,108 0/0:3,0:3:9.02:0,9,101 0/0:3,0:3:9.02:0,9,103 0/0:4,0:4:12.04:0,12,147 12 1553797 . A G 2672.82 . 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C A 7373.38 . AC=8;AF=0.095;AN=84;BaseQRankSum=-19.318;DP=3162;Dels=0.00;FS=1.282;HRun=1;HaplotypeScore=1.4408;InbreedingCoeff=0.1711;MQ=59.23;MQ0=0;MQRankSum=-0.198;QD=15.65;ReadPosRankSum=-0.013 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,162,2064 0/0:55,0:55:99:0,156,1980 0/1:27,29:56:99:812,0,712 0/0:166,2:168:99:0,365,5471 0/0:131,0:131:99:0,343,4708 0/0:123,0:125:99:0,331,4522 0/1:40,65:105:99:1838,0,1295 0/0:84,0:84:99:0,199,2759 0/0:50,0:50:99:0,135,1743 0/0:53,1:54:99:0,147,1894 0/0:65,0:65:99:0,178,2268 0/0:54,0:54:99:0,147,1876 0/0:59,0:59:99:0,156,2008 0/0:67,0:67:99:0,181,2289 0/0:219,1:220:99:0,581,7477 0/0:47,0:47:99:0,132,1669 0/0:55,0:55:99:0,147,1905 0/0:45,0:45:99:0,126,1592 0/0:64,0:64:99:0,178,2261 0/0:89,0:89:99:0,223,2870 0/0:90,0:90:99:0,241,3094 0/0:53,0:53:99:0,141,1807 0/0:159,0:159:99:0,409,5600 0/0:94,0:94:99:0,229,3158 0/1:66,45:111:99:1156,0,1971 0/0:94,0:94:99:0,226,3072 0/0:45,0:45:99:0,126,1584 0/0:58,0:58:99:0,162,2025 0/0:54,0:54:99:0,150,1907 0/1:27,25:52:99:648,0,774 0/1:22,17:39:99:468,0,689 0/0:77,1:78:99:0,146,2317 0/0:52,0:52:99:0,129,1690 0/0:55,0:55:99:0,147,1884 0/0:53,0:53:99:0,144,1845 0/0:74,0:74:99:0,193,2478 0/1:28,34:62:99:976,0,838 1/1:1,45:46:93.25:1476,93,0 0/0:64,0:64:99:0,178,2271 0/0:76,0:76:99:0,190,2442 0/0:51,0:51:99:0,144,1830 0/0:51,0:51:99:0,135,1741 12 1893170 . C T 4711.97 . 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A G 368.76 . 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A G 11.85 . 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T C 10322.27 . AC=4;AF=0.048;AN=84;BaseQRankSum=19.029;DP=7953;DS;Dels=0.00;FS=2.674;HRun=0;HaplotypeScore=2.6958;InbreedingCoeff=-0.0500;MQ=59.62;MQ0=0;MQRankSum=1.190;QD=12.89;ReadPosRankSum=3.637 GT:AD:DP:GQ:PL 0/0:171,1:172:99:0,460,5638 0/0:167,0:168:99:0,436,5375 0/0:145,0:145:99:0,397,4840 0/0:245,0:245:99:0,668,8191 0/0:249,0:249:99:0,668,8273 0/0:246,0:246:99:0,680,8597 0/0:249,0:249:99:0,662,8360 0/0:248,0:248:99:0,653,8181 0/0:167,0:168:99:0,454,5504 0/0:162,1:163:99:0,399,5285 0/0:159,1:160:99:0,424,5186 0/0:171,0:172:99:0,463,5649 0/0:147,2:149:99:0,391,4796 0/0:169,0:169:99:0,439,5403 0/0:250,0:250:99:0,677,8056 0/0:140,0:140:99:0,400,4848 0/1:99,88:187:99:2496,0,2734 0/0:155,0:155:99:0,415,5076 0/0:245,0:245:99:0,662,8143 0/0:221,0:221:99:0,566,7017 0/0:239,0:240:99:0,623,7618 0/0:163,0:163:99:0,430,5295 0/0:249,0:250:99:0,683,8427 0/0:246,0:247:99:0,671,8313 0/0:244,0:245:99:0,677,8397 0/1:147,97:244:99:3011,0,4081 0/0:134,0:134:99:0,355,4337 0/0:153,0:153:99:0,418,5104 0/0:160,0:160:99:0,412,5092 0/0:189,0:190:99:0,478,5933 0/0:156,0:156:99:0,424,5212 0/0:233,0:233:99:0,596,7457 0/0:162,0:162:99:0,421,5187 0/0:167,1:169:99:0,429,5479 0/0:138,0:138:99:0,388,4675 0/0:196,0:196:99:0,518,6335 0/1:113,96:210:99:2650,0,2941 0/1:83,77:160:99:2166,0,2303 0/0:145,0:145:99:0,400,4854 0/0:153,0:154:99:0,427,5133 0/0:138,0:138:99:0,385,4614 0/0:163,0:164:99:0,433,5284 12 2064616 . A G 10380.25 . AC=4;AF=0.048;AN=84;BaseQRankSum=25.095;DP=7813;DS;Dels=0.00;FS=3.844;HRun=0;HaplotypeScore=2.4488;InbreedingCoeff=-0.0500;MQ=59.60;MQ0=0;MQRankSum=-0.332;QD=13.14;ReadPosRankSum=2.774 GT:AD:DP:GQ:PL 0/0:169,0:170:99:0,451,5433 0/0:167,1:168:99:0,445,5350 0/0:138,0:138:99:0,373,4479 0/0:250,0:250:99:0,710,8280 0/0:246,0:246:99:0,638,7789 0/0:248,0:249:99:0,689,8421 0/0:244,0:244:99:0,665,8178 0/0:246,1:248:99:0,659,8013 0/0:162,0:162:99:0,460,5382 0/0:154,1:155:99:0,392,5007 0/0:156,0:156:99:0,415,4980 0/0:180,0:180:99:0,475,5722 0/0:149,0:149:99:0,400,4774 0/0:162,0:162:99:0,430,5133 0/0:246,0:247:99:0,683,7967 0/0:137,0:137:99:0,382,4500 0/1:104,84:188:99:2490,0,2812 0/0:151,0:151:99:0,415,4929 0/0:228,0:228:99:0,620,7466 0/0:221,0:221:99:0,566,6921 0/0:225,0:225:99:0,599,7192 0/0:161,0:161:99:0,415,5038 0/0:249,1:250:99:0,686,8194 0/0:249,0:249:99:0,659,8078 0/0:245,0:246:99:0,683,8201 0/1:149,100:250:99:3045,0,4098 0/0:138,0:138:99:0,358,4348 0/0:146,0:147:99:0,409,4853 0/0:155,2:157:99:0,368,4867 0/0:178,0:178:99:0,466,5653 0/0:149,0:149:99:0,394,4801 0/0:235,0:235:99:0,608,7489 0/0:167,0:167:99:0,433,5244 0/0:168,0:168:99:0,454,5456 0/0:133,0:133:99:0,361,4313 0/0:185,0:185:99:0,496,5958 0/1:114,95:209:99:2593,0,2931 0/1:67,76:143:99:2252,0,1811 0/0:134,0:134:99:0,370,4394 0/0:147,0:147:99:0,409,4871 0/0:138,0:138:99:0,379,4468 0/0:155,0:155:99:0,427,5055 12 2064634 . A G 8545.35 . AC=4;AF=0.048;AN=84;BaseQRankSum=1.221;DP=7339;DS;Dels=0.00;FS=4.613;HRun=0;HaplotypeScore=2.8532;InbreedingCoeff=-0.0500;MQ=59.60;MQ0=0;MQRankSum=2.709;QD=11.35;ReadPosRankSum=-1.801 GT:AD:DP:GQ:PL 0/0:139,0:140:99:0,385,4633 0/0:154,0:155:99:0,409,5000 0/0:132,1:134:99:0,364,4414 0/0:249,1:250:99:0,713,8583 0/0:246,1:247:99:0,695,8425 0/0:238,0:238:99:0,677,8402 0/0:227,0:227:99:0,653,7940 0/0:238,0:238:99:0,647,7915 0/0:157,0:157:99:0,436,5221 0/0:131,1:132:99:0,334,4342 0/0:141,0:141:99:0,400,4772 0/0:168,0:168:99:0,454,5535 0/0:149,0:149:99:0,382,4647 0/0:146,0:147:99:0,409,4905 0/0:249,0:250:99:0,686,8084 0/0:127,0:127:99:0,352,4208 0/1:103,77:180:99:2058,0,2901 0/0:149,0:149:99:0,412,4934 0/0:195,1:197:99:0,536,6430 0/0:208,0:209:99:0,545,6716 0/0:198,0:199:99:0,527,6381 0/0:128,0:128:99:0,343,4182 0/0:249,0:250:99:0,728,8764 0/0:217,0:217:99:0,608,7443 0/0:229,0:229:99:0,644,7867 0/1:143,91:234:99:2527,0,4205 0/0:133,0:133:99:0,355,4321 0/0:128,0:128:99:0,367,4386 0/0:150,1:151:99:0,415,5023 0/0:164,0:165:99:0,433,5300 0/0:143,0:143:99:0,391,4796 0/0:228,0:229:99:0,578,7151 0/0:139,0:139:99:0,364,4405 0/0:148,0:148:99:0,406,4931 0/0:140,0:142:99:0,379,4605 0/0:172,0:172:99:0,463,5657 0/1:112,83:196:99:2063,0,2835 0/1:70,73:143:99:1897,0,1900 0/0:136,0:136:99:0,373,4528 0/0:137,0:138:99:0,394,4708 0/0:133,0:134:99:0,373,4469 0/0:149,0:149:99:0,424,5094 12 2064666 . T C 3696.07 . AC=2;AF=0.024;AN=84;BaseQRankSum=7.156;DP=6779;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.3615;InbreedingCoeff=-0.0244;MQ=59.62;MQ0=0;MQRankSum=-1.209;QD=13.95;ReadPosRankSum=-0.960 GT:AD:DP:GQ:PL 0/0:125,0:125:99:0,364,4476 0/0:138,0:138:99:0,397,4878 0/0:124,0:124:99:0,343,4254 0/0:249,0:250:99:0,704,8879 0/0:250,0:250:99:0,716,9154 0/0:250,0:250:99:0,698,9157 0/0:250,0:250:99:0,692,9010 0/0:249,0:250:99:0,701,8990 0/0:146,0:146:99:0,418,5146 0/0:113,0:113:99:0,316,3882 0/0:123,0:123:99:0,352,4274 0/0:142,0:142:99:0,406,5018 0/0:110,0:110:99:0,304,3790 0/0:134,0:135:99:0,388,4750 0/0:250,0:250:99:0,713,8821 0/0:110,0:110:99:0,298,3726 0/0:147,0:147:99:0,403,5001 0/0:133,0:133:99:0,370,4610 0/0:172,0:172:99:0,491,6098 0/0:174,0:174:99:0,494,6186 0/0:176,0:177:99:0,494,6150 0/0:105,0:105:99:0,292,3556 0/0:249,0:250:99:0,728,9239 0/0:246,1:247:99:0,673,9106 0/0:249,0:250:99:0,707,9115 0/0:247,0:247:99:0,683,8761 0/0:104,0:105:99:0,304,3719 0/0:112,0:112:99:0,304,3779 0/0:135,0:135:99:0,379,4694 0/0:125,0:125:99:0,361,4443 0/0:128,0:128:99:0,358,4453 0/0:194,0:194:99:0,527,6653 0/0:117,1:118:99:0,278,3888 0/1:63,59:122:99:1718,0,1725 0/0:131,0:131:99:0,373,4588 0/1:77,66:143:99:1978,0,2339 0/0:138,0:138:99:0,376,4737 0/0:127,0:127:99:0,364,4448 0/0:134,0:134:99:0,382,4698 0/0:142,0:142:99:0,409,5079 0/0:111,0:112:99:0,310,3840 0/0:144,0:144:99:0,418,5170 12 2558186 . G A 10772.41 . AC=25;AF=0.298;AN=84;BaseQRankSum=0.405;DP=1215;Dels=0.00;FS=5.048;HRun=0;HaplotypeScore=0.4213;InbreedingCoeff=0.0317;MQ=59.29;MQ0=0;MQRankSum=-2.443;QD=15.98;ReadPosRankSum=0.463 GT:AD:DP:GQ:PL 0/0:25,0:25:57.17:0,57,705 0/0:18,0:18:48.13:0,48,561 0/0:20,0:20:60.16:0,60,691 0/1:14,17:31:99:458,0,444 0/1:22,7:29:99:176,0,676 0/0:36,0:36:99:0,99,1292 0/0:27,0:27:81.24:0,81,1045 0/0:26,0:26:72.23:0,72,953 0/0:28,0:28:78.19:0,78,895 0/0:18,0:18:51.15:0,51,617 0/0:21,0:21:54.15:0,54,619 1/1:0,20:20:51.15:618,51,0 0/1:9,12:21:99:345,0,239 1/1:0,16:16:42.12:501,42,0 0/1:39,41:81:99:1143,0,913 0/1:12,4:16:30.48:30,0,318 1/1:1,22:23:28.63:667,29,0 0/0:23,0:23:66.19:0,66,767 0/1:21,32:53:99:826,0,511 0/1:18,26:44:99:789,0,399 0/1:33,26:62:99:654,0,754 0/1:13,15:28:99:400,0,339 0/1:14,29:43:99:785,0,399 0/0:31,0:31:81.25:0,81,1072 0/0:35,0:35:93.29:0,93,1228 0/0:36,0:36:93.28:0,93,1216 0/1:3,13:16:57.78:393,0,58 0/1:12,11:23:99:328,0,249 0/0:18,0:18:54.14:0,54,598 0/1:15,11:26:99:292,0,425 0/0:11,0:12:30.08:0,30,341 0/0:54,0:54:99:0,129,1548 0/1:15,13:28:99:323,0,433 0/0:22,0:22:60.15:0,60,683 0/0:20,0:20:57.16:0,57,670 0/0:30,0:30:78.23:0,78,936 0/1:23,26:49:99:704,0,518 1/1:0,24:24:66.20:796,66,0 0/0:17,0:17:51.14:0,51,572 0/1:10,14:24:99:366,0,246 0/1:10,7:17:99:178,0,253 0/0:24,0:24:63.16:0,63,718 12 2694638 . C T 406.19 . AC=4;AF=0.048;AN=84;BaseQRankSum=3.283;DP=231;Dels=0.00;FS=7.164;HRun=0;HaplotypeScore=0.2170;InbreedingCoeff=0.1324;MQ=57.88;MQ0=1;MQRankSum=-0.255;QD=15.04;ReadPosRankSum=1.895 GT:AD:DP:GQ:PL 0/0:7,0:7:18.05:0,18,202 0/0:3,0:3:6.02:0,6,71 0/0:6,0:6:15.04:0,15,169 0/0:3,0:3:9.02:0,9,97 0/0:12,0:12:30.06:0,30,335 0/0:8,0:8:24.04:0,24,253 0/0:8,0:8:18.04:0,18,203 0/0:3,0:3:6:0,6,59 0/0:2,0:2:6.02:0,6,68 0/0:2,0:2:3.01:0,3,35 0/0:4,0:4:6.02:0,6,67 0/0:7,0:7:18.03:0,18,183 0/0:3,0:3:9.02:0,9,94 0/0:6,0:6:12.03:0,12,131 0/0:11,0:11:21.04:0,21,224 0/1:4,6:11:37.86:190,0,38 0/0:4,0:4:9.02:0,9,96 0/1:0,4:5:0.26:137,12,0 0/0:7,0:7:15.04:0,15,163 0/0:11,0:11:30.08:0,30,333 0/0:4,0:5:9.02:0,9,100 0/0:6,0:6:15.02:0,15,148 0/0:8,0:8:9.03:0,9,105 0/0:11,0:11:30.05:0,30,318 0/0:5,0:5:12.04:0,12,139 0/0:4,0:4:9.03:0,9,105 0/0:2,0:2:3.01:0,3,32 0/0:3,0:3:9.03:0,9,104 0/0:1,0:2:3.01:0,3,32 0/0:5,0:5:15.04:0,15,171 0/0:5,0:5:9.02:0,9,97 0/1:4,3:7:87.23:87,0,102 0/0:7,0:7:15.03:0,15,159 0/0:5,0:5:15.03:0,15,152 0/1:1,3:4:11.67:87,0,12 0/0:6,0:6:15.03:0,15,152 0/0:5,0:5:12.03:0,12,135 0/0:4,0:4:12.03:0,12,131 0/0:2,0:2:3.01:0,3,32 0/0:3,0:3:6.02:0,6,72 0/0:7,0:7:21.05:0,21,228 0/0:2,0:2:6.02:0,6,64 12 2760898 . C T 2623.99 . AC=4;AF=0.048;AN=84;BaseQRankSum=-7.506;DP=1609;Dels=0.00;FS=2.179;HRun=1;HaplotypeScore=1.2591;InbreedingCoeff=-0.0500;MQ=59.32;MQ0=0;MQRankSum=0.862;QD=12.04;ReadPosRankSum=0.994 GT:AD:DP:GQ:PL 0/0:27,0:28:78.24:0,78,979 0/0:17,0:17:48.12:0,48,576 0/0:21,0:21:63.20:0,63,800 0/0:51,0:51:99:0,150,1929 0/0:54,0:54:99:0,156,2014 0/0:48,0:48:99:0,141,1818 0/0:30,0:30:87.27:0,87,1123 0/0:46,0:47:99:0,126,1589 0/0:29,0:29:81.21:0,81,978 0/0:22,0:22:66.20:0,66,818 0/0:32,0:32:96.30:0,96,1189 0/0:32,0:32:87.23:0,87,1031 0/0:26,0:26:75.23:0,75,931 0/0:24,0:24:69.21:0,69,862 0/1:64,39:103:99:1044,0,1844 0/0:38,0:38:99:0,102,1263 0/1:16,13:29:99:364,0,451 0/1:14,14:28:99:411,0,399 0/1:27,31:58:99:892,0,819 0/0:82,0:82:99:0,229,2841 0/0:53,0:54:99:0,147,1766 0/0:62,0:62:99:0,178,2199 0/0:66,0:66:99:0,175,2278 0/0:28,0:28:78.24:0,78,1011 0/0:38,0:38:99:0,111,1441 0/0:38,0:38:99:0,105,1371 0/0:26,0:26:75.23:0,75,934 0/0:35,0:35:96.29:0,96,1194 0/0:23,0:23:63.19:0,63,772 0/0:28,1:29:54.62:0,55,964 0/0:25,0:25:75.22:0,75,909 0/0:54,0:54:99:0,147,1870 0/0:46,0:46:99:0,135,1675 0/0:26,0:26:78.22:0,78,949 0/0:32,0:32:90.27:0,90,1123 0/0:37,0:37:99:0,108,1293 0/0:46,0:46:99:0,135,1602 0/0:32,0:32:96.30:0,96,1191 0/0:35,0:35:99:0,102,1242 0/0:25,0:25:72.22:0,72,899 0/0:18,0:18:54.16:0,54,656 0/0:33,1:34:64.51:0,65,1183 12 2791130 . C T 94323.64 . 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A G 96210.10 . AC=68;AF=0.810;AN=84;BaseQRankSum=21.875;DP=3945;Dels=0.00;FS=4.356;HRun=1;HaplotypeScore=3.5128;InbreedingCoeff=-0.0809;MQ=59.15;MQ0=0;MQRankSum=0.134;QD=25.39;ReadPosRankSum=-0.476 GT:AD:DP:GQ:PL 1/1:0,92:93:99:3062,247,0 1/1:0,94:94:99:3062,244,0 1/1:0,82:82:99:2732,211,0 0/1:82,78:160:99:2124,0,2262 1/1:0,90:90:99:3110,229,0 1/1:1,81:83:99:2888,214,0 1/1:0,62:62:99:2162,160,0 1/1:0,85:85:99:2766,208,0 1/1:0,88:89:99:2942,232,0 0/1:31,42:73:99:1206,0,805 0/1:42,42:84:99:1219,0,1133 0/1:41,30:71:99:765,0,1242 1/1:0,56:56:99:1901,150,0 0/1:46,30:76:99:765,0,1309 1/1:0,234:234:99:7479,590,0 1/1:0,71:71:99:2343,190,0 1/1:0,77:77:99:2523,202,0 0/1:34,46:80:99:1268,0,980 0/1:111,72:183:99:1858,0,3011 0/1:84,86:170:99:2461,0,2107 0/1:85,57:142:99:1466,0,2221 1/1:0,88:88:99:3047,244,0 0/1:70,67:137:99:1891,0,1954 1/1:0,54:54:99:1931,141,0 1/1:0,94:94:99:3387,250,0 1/1:0,46:46:99:1679,126,0 1/1:0,62:62:99:2182,172,0 1/1:0,80:80:99:2713,214,0 0/1:43,23:66:99:626,0,1226 1/1:0,80:80:99:2655,211,0 1/1:0,52:53:99:1789,144,0 0/0:156,0:156:99:0,412,5049 1/1:0,86:86:99:2953,232,0 1/1:0,79:79:99:2574,202,0 1/1:0,67:67:99:2096,165,0 1/1:1,77:78:99:2686,187,0 1/1:0,164:164:99:5023,406,0 1/1:0,76:76:99:2616,214,0 1/1:0,92:92:99:3060,244,0 0/1:47,33:80:99:901,0,1330 0/1:40,39:79:99:1122,0,1117 0/1:33,40:73:99:1178,0,843 12 2791205 . A G 102551.44 . 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A G 506.48 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.934;DP=357;Dels=0.00;FS=2.084;HRun=0;HaplotypeScore=0.3358;InbreedingCoeff=-0.0405;MQ=58.88;MQ0=0;MQRankSum=1.161;QD=15.83;ReadPosRankSum=1.306 GT:AD:DP:GQ:PL 0/0:9,0:9:24.08:0,24,300 0/0:3,0:3:9.03:0,9,111 0/0:6,0:6:15.04:0,15,173 0/1:6,9:15:99:294,0,180 0/0:13,0:13:33.10:0,33,410 0/0:9,0:9:27.08:0,27,331 0/0:7,0:8:18.04:0,18,203 0/0:8,0:8:21.07:0,21,267 0/0:7,0:7:21.06:0,21,246 0/0:6,0:6:18.05:0,18,212 0/0:1,0:1:3.01:0,3,38 0/0:5,0:5:12.04:0,12,144 0/0:4,0:4:12.03:0,12,133 0/0:8,0:8:24.07:0,24,279 0/0:22,0:23:60.18:0,60,713 0/0:9,0:9:27.08:0,27,327 0/0:8,0:8:24.07:0,24,285 0/0:6,0:6:18.05:0,18,215 0/0:14,0:14:42.13:0,42,502 0/0:22,0:22:60.19:0,60,736 0/0:12,0:12:30.09:0,30,363 0/0:14,0:14:36.11:0,36,449 0/1:8,9:17:99:274,0,252 0/0:11,0:11:33.09:0,33,387 0/0:11,0:11:30.10:0,30,392 0/0:10,0:10:30.09:0,30,371 0/0:4,0:4:12.02:0,12,129 0/0:4,0:4:9.03:0,9,106 0/0:6,0:6:18.05:0,18,212 0/0:3,0:3:9.03:0,9,107 0/0:6,0:6:18.06:0,18,222 0/0:13,0:13:39.12:0,39,467 0/0:10,0:10:30.09:0,30,355 0/0:6,0:6:18.03:0,18,200 0/0:4,0:4:12.04:0,12,143 0/0:3,0:3:9.03:0,9,104 0/0:7,0:7:21.06:0,21,248 0/0:6,0:6:15.05:0,15,181 0/0:7,0:7:21.06:0,21,253 0/0:6,0:6:18.05:0,18,215 0/0:5,0:5:15.04:0,15,175 0/0:8,0:8:21.06:0,21,261 12 2909203 . A AG 15.73 . AC=5;AF=0.060;AN=84;BaseQRankSum=-4.613;DP=4412;DS;FS=1449.323;HRun=2;HaplotypeScore=259.3489;InbreedingCoeff=-0.0672;MQ=59.02;MQ0=0;MQRankSum=2.704;QD=0.04;ReadPosRankSum=-16.146 GT:AD:DP:GQ:PL 0/0:75,0:75:96.97:0,97,1460 0/0:82,0:82:84.52:0,85,1631 0/1:56,22:78:18.11:18,0,1315 0/0:194,0:194:99:0,170,3350 0/0:173,0:173:99:0,122,3041 0/0:135,0:134:99:0,112,2279 0/0:127,0:126:99:0,133,2368 0/0:128,0:123:99:0,179,2455 0/0:91,0:91:99:0,127,1875 0/0:76,0:76:45.04:0,45,1402 0/0:64,0:64:97.87:0,98,1281 0/0:54,27:81:17.22:0,17,1267 0/0:69,0:69:42.49:0,42,1125 0/1:91,0:91:13.85:14,0,1326 0/0:167,80:247:63.74:0,64,3697 0/1:47,23:70:44.71:45,0,845 0/1:75,0:75:14.68:15,0,1211 0/0:78,0:78:97.64:0,98,1577 0/0:135,1:136:99:0,145,2644 0/0:163,0:163:99:0,231,3309 0/0:127,0:127:99:0,163,2763 0/0:97,0:97:88.90:0,89,1874 0/0:121,62:183:99:0,163,2924 0/0:108,0:107:59.29:0,59,2218 0/0:146,0:142:99:0,166,2593 0/0:114,0:113:99:0,103,2138 0/0:50,0:50:60.44:0,60,1050 0/0:69,30:99:35.39:0,35,1692 0/0:84,0:84:77.71:0,78,1440 0/0:89,0:89:60.75:0,61,1801 0/0:74,0:74:5.10:0,5,1056 0/0:156,0:156:99:0,145,3145 0/0:80,0:80:99:0,132,1672 0/0:65,1:66:17.69:0,18,1223 0/1:81,0:81:26.12:26,0,1196 0/0:84,0:84:88.61:0,89,1638 0/0:140,1:141:84.37:0,84,2781 0/0:80,16:96:84.77:0,85,1839 0/0:84,0:84:11.89:0,12,1298 0/0:76,0:76:14.69:0,15,1230 0/0:68,0:68:28.86:0,29,1287 0/0:76,0:76:19.91:0,20,1526 12 2930006 . T C 5.59 . AC=1;AF=0.012;AN=84;BaseQRankSum=-16.351;DP=1830;Dels=0.00;FS=109.051;HRun=4;HaplotypeScore=2.0408;InbreedingCoeff=-0.0259;MQ=58.56;MQ0=0;MQRankSum=-2.401;QD=0.10;ReadPosRankSum=-8.529 GT:AD:DP:GQ:PL 0/0:28,5:33:44.21:0,44,715 0/0:18,5:24:47.72:0,48,536 0/0:28,5:33:65.90:0,66,757 0/0:73,18:92:99:0,132,1935 0/0:58,11:69:96.10:0,96,1693 0/0:40,8:49:70.56:0,71,1063 0/0:43,10:53:77.87:0,78,1272 0/0:48,6:54:99:0,102,1241 0/0:30,1:31:69.16:0,69,779 0/0:27,6:33:46.48:0,46,813 0/0:21,4:25:31.44:0,31,563 0/0:25,7:32:33.53:0,34,671 0/0:24,7:31:0.43:10,0,621 0/0:43,4:47:99:0,102,1224 0/0:94,31:125:38.48:0,38,2315 0/0:23,6:29:37.51:0,38,710 0/0:25,12:38:5.81:0,6,587 0/0:24,6:30:54.15:0,54,641 0/1:36,17:54:49.44:49,0,1012 0/0:61,3:64:99:0,153,1794 0/0:40,14:54:47.87:0,48,1021 0/0:30,4:34:72.16:0,72,808 0/0:55,20:75:99:0,114,1657 0/0:40,7:49:81.17:0,81,928 0/0:58,7:65:99:0,119,1656 0/0:38,6:44:69.65:0,70,1113 0/0:17,6:23:48.12:0,48,581 0/0:28,5:33:66.19:0,66,783 0/0:25,4:29:43.49:0,43,719 0/0:25,3:29:69.12:0,69,776 0/0:23,1:24:54.16:0,54,661 0/0:47,3:50:99:0,123,1402 0/0:35,3:40:48.49:0,48,775 0/0:33,4:38:72.20:0,72,847 0/0:30,4:35:55.36:0,55,870 0/0:29,11:40:51.60:0,52,900 0/0:44,13:57:70.56:0,71,1053 0/0:30,4:34:72.18:0,72,834 0/0:24,6:30:28.45:0,28,544 0/0:31,6:37:40.66:0,41,799 0/0:21,7:28:45.14:0,45,551 0/0:29,6:36:75.11:0,75,853 12 2973547 . G T 1173.75 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.746;DP=4941;DS;Dels=0.00;FS=1.797;HRun=0;HaplotypeScore=3.2023;InbreedingCoeff=-0.0120;MQ=59.43;MQ0=0;MQRankSum=0.640;QD=13.04;ReadPosRankSum=2.215 GT:AD:DP:GQ:PL 0/0:76,0:76:99:0,226,2717 0/0:80,0:80:99:0,226,2659 0/0:74,1:75:99:0,223,2636 0/0:223,0:223:99:0,650,8396 0/0:190,0:190:99:0,569,7352 0/0:160,0:160:99:0,457,5878 0/0:143,1:144:99:0,415,5309 0/0:161,0:162:99:0,454,5850 0/0:87,0:87:99:0,250,2999 0/0:93,0:93:99:0,265,3182 0/0:77,0:77:99:0,223,2631 0/0:79,0:79:99:0,235,2853 0/0:76,0:76:99:0,223,2639 0/0:94,0:94:99:0,256,3055 0/0:241,0:241:99:0,686,8256 0/0:88,0:88:99:0,253,3058 0/0:73,0:73:99:0,214,2525 0/0:71,0:72:99:0,214,2633 0/0:184,0:184:99:0,511,6156 0/0:179,0:179:99:0,508,6005 0/0:164,0:165:99:0,469,5636 0/0:118,0:118:99:0,334,3915 0/0:227,0:228:99:0,677,8801 0/0:125,0:125:99:0,367,4711 0/0:165,1:166:99:0,445,6073 0/0:138,0:139:99:0,406,5252 0/0:71,0:71:99:0,208,2453 0/0:88,0:88:99:0,253,3072 0/0:86,0:86:99:0,241,2858 0/0:93,0:93:99:0,262,3164 0/0:84,0:84:99:0,244,2902 0/0:140,0:141:99:0,388,4631 0/0:118,0:119:99:0,331,4020 0/0:82,0:82:99:0,244,2943 0/0:93,0:94:99:0,268,3239 0/0:99,0:99:99:0,283,3370 0/0:132,0:132:99:0,367,4333 0/0:100,1:101:99:0,249,3334 0/1:45,42:90:99:1220,0,1262 0/0:93,0:93:99:0,271,3199 0/0:81,0:81:99:0,229,2801 0/0:93,0:93:99:0,268,3139 12 2973570 . C G 1145.66 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.489;DP=4941;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.9028;InbreedingCoeff=-0.0120;MQ=59.44;MQ0=0;MQRankSum=0.703;QD=13.80;ReadPosRankSum=1.182 GT:AD:DP:GQ:PL 0/0:78,0:78:99:0,226,2487 0/0:74,0:74:99:0,214,2330 0/0:76,0:76:99:0,220,2489 0/0:198,0:199:99:0,587,7008 0/0:194,0:194:99:0,575,6886 0/0:153,0:153:99:0,439,5158 0/0:140,0:140:99:0,406,4832 0/0:149,0:149:99:0,433,5110 0/0:91,0:91:99:0,256,2837 0/1:41,42:83:99:1192,0,1081 0/0:77,0:77:99:0,222,2410 0/0:87,0:87:99:0,253,2778 0/0:64,0:64:99:0,186,2064 0/0:87,0:87:99:0,262,2909 0/0:242,0:242:99:0,677,7483 0/0:103,0:103:99:0,304,3330 0/0:86,0:86:99:0,250,2773 0/0:71,0:71:99:0,201,2218 0/0:195,1:196:99:0,529,5863 0/0:160,0:160:99:0,466,5228 0/0:166,1:169:99:0,448,5067 0/0:123,0:123:99:0,346,3852 0/0:229,0:229:99:0,674,8056 0/0:127,0:127:99:0,373,4422 0/0:153,0:154:99:0,433,5158 0/0:125,0:125:99:0,370,4371 0/0:71,0:72:99:0,199,2279 0/0:93,0:93:99:0,268,2927 0/0:103,0:103:99:0,295,3347 0/0:81,0:82:99:0,232,2568 0/0:85,0:85:99:0,238,2605 0/0:157,0:157:99:0,436,4943 0/0:102,0:103:99:0,292,3147 0/0:76,0:76:99:0,226,2456 0/0:100,0:100:99:0,274,3021 0/0:108,0:108:99:0,310,3374 0/0:150,0:151:99:0,424,4650 0/0:92,0:92:99:0,256,2856 0/0:105,0:105:99:0,298,3278 0/0:94,0:94:99:0,271,3031 0/0:82,0:82:99:0,229,2530 0/0:100,0:100:99:0,289,3172 12 2973615 . T C 28479.61 . 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G A 1909.63 . 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C T 7686.14 . 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G A 7353.16 . AC=4;AF=0.048;AN=84;BaseQRankSum=-17.167;DP=5979;DS;Dels=0.00;FS=2.198;HRun=1;HaplotypeScore=3.5597;InbreedingCoeff=-0.0500;MQ=59.50;MQ0=1;MQRankSum=0.652;QD=16.64;ReadPosRankSum=-1.544 GT:AD:DP:GQ:PL 0/0:105,0:105:99:0,298,3716 0/0:74,0:74:99:0,217,2692 0/0:90,0:90:99:0,262,3257 0/0:243,0:243:99:0,722,9590 0/0:223,1:224:99:0,631,8795 0/0:194,0:194:99:0,569,7573 0/0:176,0:176:99:0,521,6966 0/0:172,0:172:99:0,503,6703 0/0:128,0:128:99:0,382,4688 0/0:111,0:111:99:0,325,3992 0/1:40,61:101:99:1891,0,1178 0/0:93,0:93:99:0,268,3383 0/0:79,0:79:99:0,223,2785 0/1:53,49:103:99:1444,0,1614 0/0:227,0:229:99:0,653,8044 0/0:98,0:98:99:0,286,3531 0/0:137,0:137:99:0,400,4968 0/0:109,0:109:99:0,319,3992 0/0:232,0:232:99:0,683,8440 0/0:240,0:240:99:0,686,8633 0/0:233,0:233:99:0,662,8229 0/0:152,0:152:99:0,442,5573 0/0:230,0:230:99:0,668,9034 0/0:162,0:162:99:0,463,6138 0/0:174,0:174:99:0,503,6718 0/0:129,0:129:99:0,373,4944 0/0:86,0:86:99:0,238,2997 0/1:50,57:107:99:1621,0,1538 0/0:75,0:75:99:0,223,2769 0/0:102,0:102:99:0,289,3642 0/0:114,0:114:99:0,337,4156 0/0:237,0:237:99:0,668,8399 0/0:155,0:155:99:0,454,5614 0/0:107,0:107:99:0,313,3942 0/0:109,0:109:99:0,325,3999 0/0:102,0:102:99:0,289,3664 0/0:231,0:231:99:0,665,8199 0/0:99,0:99:99:0,295,3645 0/0:125,0:125:99:0,361,4511 0/0:92,0:92:99:0,274,3395 0/0:88,0:88:99:0,256,3139 0/1:53,78:131:99:2397,0,1507 12 4488742 . C A 3.36 . 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A G 17098.40 . AC=33;AF=0.393;AN=84;BaseQRankSum=-8.973;DP=2110;Dels=0.00;FS=0.939;HRun=0;HaplotypeScore=0.9966;InbreedingCoeff=0.0517;MQ=58.97;MQ0=0;MQRankSum=0.281;QD=16.71;ReadPosRankSum=-3.213 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,150,1820 0/0:42,0:42:99:0,105,1330 0/1:15,14:29:99:391,0,439 0/1:25,28:53:99:729,0,724 0/1:29,20:49:99:424,0,845 1/1:0,34:34:81.25:1055,81,0 1/1:0,36:36:93.28:1167,93,0 0/1:30,22:52:99:669,0,754 0/1:27,18:45:99:459,0,721 1/1:0,28:28:75.21:893,75,0 0/1:12,19:31:99:523,0,322 0/1:12,15:27:99:357,0,342 0/1:27,18:45:99:434,0,751 0/0:38,0:38:99:0,111,1350 0/0:177,0:177:99:0,436,5447 0/1:14,15:29:99:426,0,416 0/0:49,0:49:99:0,135,1676 0/1:26,12:38:99:282,0,809 0/0:76,0:76:99:0,190,2391 0/0:84,0:84:99:0,199,2551 0/0:72,0:72:99:0,190,2341 0/1:24,18:42:99:459,0,733 0/0:93,0:93:99:0,223,2892 0/0:62,0:62:99:0,150,1960 0/0:78,0:78:99:0,187,2441 0/0:48,0:48:99:0,117,1507 0/1:16,17:33:99:407,0,447 0/1:17,20:37:99:480,0,469 0/1:18,21:39:99:581,0,527 0/1:25,18:43:99:451,0,701 0/0:35,0:35:96.30:0,96,1187 0/0:91,0:91:99:0,244,3033 1/1:0,36:36:93.25:1096,93,0 0/0:38,0:38:99:0,108,1339 0/1:17,17:34:99:440,0,475 0/0:51,0:51:99:0,144,1761 1/1:0,64:64:99:1982,165,0 0/1:26,21:47:99:496,0,694 0/1:21,14:35:99:296,0,652 1/1:0,38:38:96.27:1143,96,0 1/1:2,41:43:36.93:1162,37,0 0/1:24,12:36:99:296,0,686 12 4553383 . A G 15449.53 . 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T C 433.40 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.421;DP=1561;Dels=0.00;FS=2.590;HRun=0;HaplotypeScore=0.9280;InbreedingCoeff=-0.0120;MQ=59.26;MQ0=0;MQRankSum=0.962;QD=12.75;ReadPosRankSum=0.399 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,126,1563 0/0:29,0:29:78.24:0,78,963 0/0:31,0:31:90.28:0,90,1116 0/0:33,0:33:84.26:0,84,1059 0/0:30,0:30:81.25:0,81,1033 0/0:36,0:36:96.31:0,96,1256 0/0:15,0:15:39.12:0,39,499 0/0:34,0:34:87.28:0,87,1144 0/0:35,0:35:90.25:0,90,1108 0/0:27,0:27:69.19:0,69,847 0/0:32,0:32:81.24:0,81,996 0/0:26,0:26:75.23:0,75,906 0/0:32,0:32:84.23:0,84,1045 0/0:31,0:31:84.25:0,84,1038 0/0:136,0:137:99:0,343,4325 0/0:28,0:28:75.24:0,75,937 0/0:31,0:31:90.27:0,90,1090 0/0:35,0:35:99:0,99,1225 0/0:56,0:56:99:0,150,1895 0/0:66,0:66:99:0,175,2207 0/0:64,0:64:99:0,156,1992 0/0:29,0:29:75.24:0,75,942 0/0:60,0:60:99:0,166,2124 0/0:29,0:29:72.23:0,72,958 0/0:35,0:35:99:0,99,1258 0/0:27,0:27:78.24:0,78,989 0/0:20,0:20:60.18:0,60,720 0/0:31,0:31:87.27:0,87,1072 0/0:29,0:29:75.23:0,75,944 0/0:33,0:33:93.28:0,93,1118 0/0:30,0:31:87.27:0,87,1073 0/0:64,0:64:99:0,159,2020 0/0:37,0:37:99:0,99,1181 0/0:23,0:23:66.20:0,66,815 0/0:22,0:22:63.18:0,63,760 0/0:48,0:48:99:0,126,1574 0/0:38,0:38:99:0,99,1244 0/0:34,0:34:90.28:0,90,1112 0/1:19,15:34:99:480,0,515 0/0:34,0:34:93.28:0,93,1151 0/0:16,0:16:48.12:0,48,557 0/0:34,0:34:96.30:0,96,1203 12 4627414 . C T 18925.65 . 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G A 1406.79 . 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C T 3691.85 . 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A T 9611.17 . 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C T 47367.18 . AC=27;AF=0.321;AN=84;BaseQRankSum=-23.441;DP=5941;DS;Dels=0.00;FS=10.165;HRun=1;HaplotypeScore=4.4831;InbreedingCoeff=0.0721;MQ=59.49;MQ0=0;MQRankSum=-0.323;QD=16.87;ReadPosRankSum=-1.525 GT:AD:DP:GQ:PL 0/1:65,51:116:99:1364,0,1798 0/1:55,64:119:99:1789,0,1422 0/1:46,50:96:99:1387,0,1326 0/0:250,0:250:99:0,680,8939 0/0:241,1:242:99:0,647,8476 1/1:0,184:184:99:6035,469,0 0/1:87,65:152:99:1733,0,2674 0/1:94,93:187:99:2455,0,2833 0/0:111,0:111:99:0,325,3977 0/0:120,0:120:99:0,325,4040 0/1:52,38:91:99:1001,0,1560 1/1:0,92:92:99:2960,244,0 0/1:45,45:90:99:1139,0,1209 0/1:47,45:92:99:1139,0,1401 0/0:250,0:250:99:0,689,8325 0/0:105,0:106:99:0,277,3405 0/1:68,69:137:99:1927,0,1880 0/1:53,50:103:99:1423,0,1455 0/0:200,0:200:99:0,542,6565 0/0:240,1:241:99:0,583,7725 0/1:110,100:210:99:2726,0,3002 0/1:67,66:133:99:1838,0,1944 0/0:248,1:250:99:0,625,8666 0/0:157,0:157:99:0,415,5479 0/0:194,0:194:99:0,494,6478 0/0:161,0:162:99:0,421,5516 0/0:97,0:97:99:0,277,3423 0/0:92,0:92:99:0,241,2978 0/0:93,0:93:99:0,250,3102 0/0:103,0:103:99:0,274,3403 0/0:89,1:90:99:0,223,3075 0/1:122,99:221:99:2418,0,3440 0/0:149,0:149:99:0,394,4885 1/1:1,101:102:99:3340,245,0 1/1:0,81:81:99:2655,220,0 1/1:0,102:102:99:3405,286,0 0/1:97,83:180:99:2196,0,2685 0/0:107,0:107:99:0,289,3628 0/1:50,66:116:99:1860,0,1465 0/1:63,50:113:99:1370,0,1789 0/1:48,43:91:99:1208,0,1423 0/0:119,0:119:99:0,322,4010 12 4714232 . C G 217.26 . 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A G 420.61 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.568;DP=2030;Dels=0.00;FS=5.723;HRun=0;HaplotypeScore=0.9884;InbreedingCoeff=-0.0120;MQ=59.35;MQ0=0;MQRankSum=-0.950;QD=13.57;ReadPosRankSum=-0.773 GT:AD:DP:GQ:PL 0/0:33,0:33:96.26:0,96,1138 0/0:44,0:44:99:0,117,1436 0/0:38,0:38:99:0,102,1210 0/0:80,0:80:99:0,208,2538 0/0:81,0:81:99:0,217,2659 0/0:62,0:62:99:0,175,2167 0/0:61,0:61:99:0,159,1988 0/0:48,0:48:99:0,138,1670 0/0:51,0:51:99:0,132,1586 0/0:37,0:37:99:0,99,1198 0/0:24,1:25:63.19:0,63,753 0/0:34,0:34:99:0,99,1186 0/0:40,0:40:99:0,114,1361 0/0:37,0:37:99:0,105,1263 0/0:141,0:141:99:0,361,4374 0/0:34,0:35:99:0,99,1171 0/0:46,0:47:99:0,114,1437 0/0:45,0:45:99:0,126,1507 0/0:56,0:56:99:0,153,1864 0/0:50,0:50:99:0,123,1528 0/0:46,0:46:99:0,126,1528 0/0:39,0:39:99:0,117,1349 0/0:96,0:96:99:0,247,2990 0/0:44,0:44:99:0,114,1431 0/0:47,0:47:99:0,132,1591 0/0:42,0:44:99:0,108,1318 0/0:38,0:38:99:0,111,1328 0/0:38,0:38:99:0,111,1302 0/0:27,0:27:78.24:0,78,944 0/0:31,0:31:84.25:0,84,1015 0/1:15,16:31:99:467,0,443 0/0:44,0:44:99:0,117,1431 0/0:47,0:47:99:0,126,1499 0/0:34,0:34:99:0,102,1200 0/0:43,0:43:99:0,126,1476 0/0:51,0:51:99:0,144,1746 0/0:73,0:74:99:0,187,2245 0/0:49,0:49:99:0,138,1622 0/0:49,0:49:99:0,135,1607 0/0:38,0:38:99:0,108,1272 0/0:42,0:42:99:0,126,1468 0/0:32,0:33:93.28:0,93,1107 12 6091000 . A G 92150 . AC=71;AF=0.845;AN=84;BaseQRankSum=-8.301;DP=3523;DS;Dels=0.00;FS=6.053;HRun=1;HaplotypeScore=2.1599;InbreedingCoeff=-0.0011;MQ=59.04;MQ0=0;MQRankSum=-0.509;QD=26.66;ReadPosRankSum=-6.992 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2407,205,0 1/1:0,57:57:99:1837,159,0 1/1:0,58:58:99:1879,165,0 1/1:0,162:163:99:5103,418,0 1/1:1,151:152:99:4974,372,0 1/1:0,114:114:99:3487,289,0 0/1:56,44:100:99:1140,0,1656 1/1:0,102:102:99:3308,271,0 1/1:0,73:73:99:2348,199,0 0/1:24,33:57:99:892,0,654 1/1:3,62:65:97.16:1954,97,0 1/1:1,79:80:99:2467,182,0 1/1:0,52:52:99:1566,129,0 1/1:0,66:66:99:2107,180,0 1/1:1,208:210:99:6326,529,0 1/1:0,63:63:99:1993,174,0 1/1:0,60:60:99:1956,165,0 1/1:0,56:56:99:1709,147,0 1/1:0,82:83:99:2515,220,0 1/1:0,127:127:99:4223,358,0 1/1:0,93:93:99:2969,253,0 1/1:0,72:72:99:2196,187,0 0/1:97,95:192:99:2671,0,2735 1/1:0,87:87:99:2921,229,0 1/1:0,109:109:99:3451,274,0 1/1:0,70:70:99:2305,184,0 1/1:0,46:46:99:1554,132,0 0/1:23,34:57:99:971,0,628 1/1:0,55:55:99:1604,135,0 0/1:24,26:50:99:726,0,638 1/1:0,61:61:99:2041,177,0 0/1:67,63:130:99:1500,0,1843 0/1:26,46:72:99:1205,0,669 1/1:0,56:56:99:1783,153,0 0/1:26,25:51:99:676,0,780 1/1:0,73:73:99:2379,208,0 0/1:40,57:97:99:1494,0,1128 0/1:38,45:83:99:1145,0,1063 1/1:0,67:67:99:2189,187,0 0/1:42,24:66:99:551,0,1155 1/1:0,53:53:99:1627,147,0 0/0:66,0:66:99:0,181,2190 12 6105387 . G A 9855.18 . 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T C 65457.52 . AC=77;AF=0.917;AN=84;BaseQRankSum=-8.502;DP=2443;Dels=0.00;FS=0.255;HRun=2;HaplotypeScore=1.4698;InbreedingCoeff=-0.0909;MQ=58.87;MQ0=1;MQRankSum=-0.681;QD=26.79;ReadPosRankSum=-2.419 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1746,150,0 1/1:0,44:44:99:1292,108,0 1/1:0,39:39:99:1150,102,0 0/1:27,40:67:99:1083,0,701 0/1:33,43:76:99:1100,0,996 1/1:0,71:71:99:2153,180,0 1/1:0,56:56:99:1786,156,0 1/1:0,46:47:99:1482,126,0 1/1:0,60:60:99:1814,156,0 1/1:0,59:59:99:1769,153,0 1/1:0,41:41:99:1268,117,0 1/1:0,41:41:99:1293,114,0 1/1:0,40:40:99:1191,105,0 1/1:0,59:59:99:1924,174,0 0/1:88,98:186:99:2110,0,2275 0/1:17,23:40:99:626,0,484 1/1:0,59:59:99:1728,150,0 1/1:0,52:52:99:1600,135,0 0/1:39,41:81:99:1039,0,948 0/1:35,43:78:99:1115,0,907 1/1:0,57:58:99:1781,159,0 1/1:0,52:52:99:1590,141,0 1/1:0,83:83:99:2624,223,0 1/1:0,59:59:99:1945,162,0 0/1:17,26:43:99:784,0,498 1/1:0,49:49:99:1529,126,0 1/1:0,32:33:87.24:996,87,0 1/1:0,50:50:99:1423,129,0 1/1:0,45:46:99:1326,117,0 1/1:0,62:62:99:2061,183,0 1/1:0,35:36:99:1150,99,0 1/1:1,66:68:99:1977,156,0 1/1:0,66:66:99:2117,192,0 1/1:0,50:50:99:1611,144,0 1/1:1,45:46:99:1436,102,0 1/1:0,58:58:99:1932,168,0 1/1:0,72:73:99:2188,193,0 1/1:0,51:51:99:1567,138,0 1/1:0,59:59:99:1759,153,0 1/1:0,51:51:99:1633,144,0 1/1:1,38:39:93.24:1063,93,0 1/1:1,54:55:99:1698,125,0 12 6153514 . A G 11367.13 . 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T C 12622.76 . AC=25;AF=0.298;AN=84;BaseQRankSum=21.874;DP=1732;Dels=0.00;FS=1.701;HRun=0;HaplotypeScore=1.3390;InbreedingCoeff=-0.0820;MQ=58.98;MQ0=0;MQRankSum=-1.622;QD=15.55;ReadPosRankSum=-2.155 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,117,1389 0/1:17,13:30:99:330,0,497 0/1:21,12:33:99:356,0,548 0/1:42,53:96:99:1680,0,1051 0/0:91,0:91:99:0,268,3084 0/0:46,0:46:99:0,129,1528 0/1:29,24:53:99:790,0,803 0/0:63,0:63:99:0,184,2124 0/1:22,10:32:99:233,0,626 0/1:11,15:26:99:429,0,297 0/1:9,8:17:99:261,0,234 0/1:14,17:31:99:463,0,378 0/0:24,0:24:69.21:0,69,817 0/1:15,12:27:99:380,0,361 0/0:113,0:113:99:0,295,3463 0/1:11,12:23:99:364,0,316 0/1:21,17:38:99:473,0,574 0/1:13,14:27:99:419,0,359 0/0:34,0:34:90.24:0,90,1076 0/1:24,22:46:99:595,0,634 0/0:57,1:58:99:0,156,1838 0/0:22,0:22:63.18:0,63,730 0/1:58,46:104:99:1372,0,1642 0/0:47,0:47:99:0,135,1560 0/0:73,0:73:99:0,208,2443 0/0:55,0:55:99:0,150,1724 1/1:0,29:29:84.26:1048,84,0 1/1:0,32:32:78.25:1008,78,0 0/1:16,12:28:99:345,0,422 0/0:33,0:33:90.26:0,90,1057 0/0:29,0:29:84.25:0,84,994 0/1:30,21:51:99:547,0,722 0/1:15,4:19:83.24:83,0,465 0/0:30,0:30:84.21:0,84,974 0/0:25,0:25:60.18:0,60,747 0/0:29,0:29:81.24:0,81,956 0/0:43,0:43:99:0,117,1366 0/1:12,10:22:99:280,0,359 0/0:30,0:30:81.22:0,81,937 0/1:12,18:30:99:536,0,314 1/1:0,18:18:54.14:632,54,0 0/0:31,0:31:87.23:0,87,1018 12 6173433 . C T 2080.11 . AC=5;AF=0.060;AN=84;BaseQRankSum=0.874;DP=1367;Dels=0.00;FS=4.598;HRun=0;HaplotypeScore=0.9849;InbreedingCoeff=-0.0633;MQ=59.19;MQ0=0;MQRankSum=0.165;QD=12.31;ReadPosRankSum=-0.432 GT:AD:DP:GQ:PL 0/0:18,0:18:48.13:0,48,536 0/0:32,0:32:81.23:0,81,966 0/0:29,0:29:81.21:0,81,920 0/0:64,0:64:99:0,174,2105 0/0:70,0:70:99:0,208,2473 0/0:36,0:36:99:0,99,1185 0/0:39,0:39:99:0,114,1374 0/0:54,0:54:99:0,138,1734 0/0:22,0:22:60.17:0,60,695 0/0:25,0:25:63.14:0,63,713 0/0:21,0:21:60.14:0,60,667 0/0:25,0:25:69.20:0,69,823 0/0:10,0:10:30.08:0,30,344 0/0:17,0:17:51.12:0,51,562 0/0:70,0:70:99:0,180,2088 0/0:27,0:27:75.18:0,75,841 0/0:14,0:15:39.11:0,39,455 0/0:27,0:27:75.14:0,75,801 0/0:29,0:29:78.20:0,78,871 0/0:52,0:52:99:0,123,1515 0/0:52,0:52:99:0,135,1562 0/0:43,0:43:96.26:0,96,1151 0/0:83,0:83:99:0,223,2679 0/1:27,17:44:99:426,0,795 0/1:19,27:46:99:787,0,468 0/0:35,0:35:99:0,102,1217 0/0:12,0:12:33.05:0,33,345 0/0:19,0:19:54.12:0,54,614 0/0:14,0:14:39.10:0,39,460 0/0:22,0:22:60.13:0,60,665 0/0:30,0:30:75.20:0,75,876 0/0:41,0:41:99:0,114,1291 0/0:34,0:34:87.22:0,87,1000 0/0:24,0:24:66.17:0,66,740 0/0:14,0:14:39.11:0,39,451 0/0:21,0:21:60.17:0,60,694 0/1:20,14:34:99:351,0,480 0/1:10,10:20:99:286,0,262 0/0:18,0:18:48.14:0,48,551 0/0:27,0:27:78.19:0,78,868 0/1:12,13:25:99:327,0,345 0/0:27,0:27:75.13:0,75,814 12 6345414 . A C 1678.28 . AC=4;AF=0.048;AN=84;BaseQRankSum=-6.930;DP=2370;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9219;InbreedingCoeff=-0.0500;MQ=59.25;MQ0=0;MQRankSum=0.522;QD=11.26;ReadPosRankSum=-2.628 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,138,1724 0/0:47,0:47:99:0,126,1586 0/0:34,0:34:84.26:0,84,1057 0/0:130,0:130:99:0,319,4108 0/0:120,0:120:99:0,292,3835 0/0:97,0:97:99:0,235,3107 0/0:61,0:61:99:0,163,2092 0/0:85,0:85:99:0,220,2832 0/0:48,0:48:99:0,126,1571 0/0:57,0:57:99:0,153,1893 0/0:47,0:47:99:0,129,1602 0/0:38,0:38:99:0,108,1346 0/0:37,0:37:90.27:0,90,1144 0/0:41,0:41:99:0,108,1347 0/0:175,0:175:99:0,418,5345 0/0:33,0:33:93.28:0,93,1130 0/0:43,0:43:99:0,114,1439 0/0:38,0:38:99:0,105,1333 0/0:54,0:54:99:0,144,1813 0/0:61,0:61:99:0,162,2034 0/0:44,0:44:99:0,114,1439 0/0:34,0:34:78.24:0,78,1000 0/0:124,0:124:99:0,292,3840 0/0:59,0:59:99:0,150,1946 0/0:71,0:71:99:0,187,2396 0/0:64,0:64:99:0,159,2064 0/0:36,0:36:96.30:0,96,1222 0/0:50,0:50:99:0,138,1715 0/0:43,0:43:99:0,123,1537 0/0:47,0:47:99:0,132,1662 0/0:46,0:46:99:0,117,1467 0/0:47,1:48:99:0,123,1568 0/0:32,0:32:78.25:0,78,996 0/1:14,11:25:99:306,0,391 0/0:38,0:38:99:0,105,1321 0/1:19,23:42:99:604,0,528 0/1:24,10:34:99:249,0,682 0/0:42,0:42:99:0,117,1447 0/1:24,24:48:99:606,0,616 0/0:65,0:65:99:0,178,2219 0/0:36,0:36:96.30:0,96,1199 0/0:44,0:44:99:0,123,1559 12 6426731 . C T 1196.87 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.605;DP=1965;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.0278;InbreedingCoeff=-0.0244;MQ=59.13;MQ0=0;MQRankSum=-0.013;QD=11.73;ReadPosRankSum=0.422 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,102,1198 0/0:32,0:32:93.26:0,93,1089 0/0:33,0:33:93.23:0,93,1061 0/0:88,0:88:99:0,241,2955 0/0:92,0:92:99:0,259,3262 0/0:72,0:72:99:0,190,2389 0/0:48,0:48:99:0,135,1685 0/0:55,0:57:99:0,159,1898 0/0:43,0:43:99:0,114,1375 0/0:34,0:34:96.25:0,96,1114 0/0:16,0:16:42.11:0,42,498 0/0:34,0:34:99:0,99,1127 0/0:29,0:29:84.22:0,84,972 0/0:31,0:31:87.22:0,87,1010 0/0:122,0:123:99:0,334,3885 0/0:38,0:39:99:0,108,1255 0/0:33,0:33:93.24:0,93,1094 0/0:25,0:25:69.18:0,69,793 0/0:66,0:66:99:0,178,2121 0/0:75,0:76:99:0,192,2271 0/0:63,0:63:99:0,168,1978 0/0:39,0:39:99:0,111,1291 0/0:99,0:99:99:0,271,3312 0/1:20,23:43:99:657,0,550 0/1:37,22:59:99:602,0,1165 0/0:43,0:43:99:0,123,1498 0/0:29,0:29:84.24:0,84,1001 0/0:36,1:37:62.27:0,62,1074 0/0:30,0:30:84.25:0,84,1002 0/0:36,0:36:96.27:0,96,1144 0/0:28,0:28:78.21:0,78,897 0/0:58,0:59:99:0,147,1762 0/0:57,0:57:99:0,147,1792 0/0:38,0:38:99:0,108,1256 0/0:33,0:33:96.27:0,96,1123 0/0:45,0:45:99:0,135,1569 0/0:63,0:63:99:0,174,2057 0/0:32,0:32:93.26:0,93,1070 0/0:31,0:31:93.23:0,93,1062 0/0:26,0:26:78.21:0,78,901 0/0:32,0:32:93.23:0,93,1071 0/0:33,0:33:90.23:0,90,1032 12 6438963 . G T 150.65 . AC=12;AF=0.143;AN=84;BaseQRankSum=-9.232;DP=473;Dels=0.00;FS=203.919;HRun=2;HaplotypeScore=0.5767;InbreedingCoeff=-0.2213;MQ=58.33;MQ0=0;MQRankSum=0.470;QD=1.30;ReadPosRankSum=-7.794 GT:AD:DP:GQ:PL 0/0:12,5:17:11.40:0,11,356 0/0:8,4:12:18.06:0,18,218 0/0:8,4:12:2.39:0,2,267 0/0:19,8:27:52:0,52,609 0/0:13,14:27:3.86:0,4,406 0/1:5,10:15:23.32:23,0,168 0/0:7,4:11:2.39:0,2,258 0/0:5,1:6:15.05:0,15,199 0/0:7,3:10:21.07:0,21,262 0/1:6,2:8:18.60:19,0,111 0/0:5,2:7:12.04:0,12,148 0/0:6,1:7:15.05:0,15,186 0/0:4,2:6:12.04:0,12,146 0/1:5,5:10:5.64:6,0,163 0/1:11,8:19:14.08:14,0,244 0/1:4,3:7:20.46:20,0,94 0/0:7,5:12:15.03:0,15,166 0/1:8,2:10:39.78:40,0,235 0/0:9,4:14:24.07:0,24,283 0/0:12,3:15:10.40:0,10,324 0/0:10,0:10:24.04:0,24,271 0/0:10,5:15:1.15:5,0,284 0/0:16,15:31:13.96:0,14,488 0/0:6,2:8:18.06:0,18,238 0/0:8,2:10:24.07:0,24,306 0/1:5,3:8:21.40:21,0,111 0/0:5,0:5:12.03:0,12,136 0/0:6,3:9:15.05:0,15,181 0/1:8,2:10:7.48:7,0,231 0/1:4,3:7:7.65:8,0,134 0/0:7,3:10:18.05:0,18,217 0/1:10,3:13:11.18:11,0,236 0/0:11,2:13:27.08:0,27,330 0/0:8,5:13:21.07:0,21,258 0/0:1,2:3:3.01:0,3,37 0/0:14,4:18:7.04:0,7,328 0/0:3,1:4:9.03:0,9,110 0/0:6,1:7:15.04:0,15,174 0/0:9,5:14:1.66:3,0,234 0/0:2,2:4:6.02:0,6,75 0/1:2,3:5:49.90:50,0,62 0/1:2,2:4:57.53:58,0,62 12 6438996 . G A 11.46 . 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T C 19134.49 . 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C T 148.86 . 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C G 10041.82 . 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GAA G 280.77 . 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A G 277.28 . 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T G 109705.80 . 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G A 22279.37 . 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C T 2309.59 . AC=23;AF=0.274;AN=84;BaseQRankSum=-5.928;DP=313;Dels=0.00;FS=5.364;HRun=2;HaplotypeScore=0.2953;InbreedingCoeff=0.0658;MQ=58.29;MQ0=0;MQRankSum=-0.700;QD=17.24;ReadPosRankSum=-0.608 GT:AD:DP:GQ:PL 0/0:4,0:4:12.04:0,12,153 0/1:2,2:4:47.45:47,0,64 0/1:1,4:5:23.53:132,0,24 0/0:16,0:16:48.15:0,48,623 0/0:10,0:10:30.10:0,30,401 0/0:8,0:8:24.08:0,24,331 0/0:3,0:3:9.03:0,9,113 0/0:10,0:10:30.10:0,30,407 0/1:5,4:9:99:110,0,165 1/1:1,5:6:15.05:180,15,0 0/0:3,1:4:9.03:0,9,116 0/1:3,3:6:88.53:89,0,96 0/0:3,0:3:9.02:0,9,107 0/1:3,5:8:93.13:163,0,93 0/0:15,0:15:45.14:0,45,571 0/0:8,0:8:24.08:0,24,303 0/0:4,0:4:12.04:0,12,143 0/0:4,0:4:9.03:0,9,115 0/0:12,0:12:33.07:0,33,376 0/0:14,0:14:33.10:0,33,419 0/0:11,0:11:30.09:0,30,377 0/0:6,0:6:18.06:0,18,228 0/1:6,6:12:99:194,0,192 1/1:0,7:7:21.07:264,21,0 0/1:5,2:7:60.81:61,0,182 0/1:4,4:8:93.02:118,0,93 0/0:7,0:7:21.07:0,21,267 0/0:4,0:4:12.04:0,12,149 0/0:6,0:6:18.06:0,18,229 0/1:4,4:8:99:124,0,124 0/0:3,0:3:9.02:0,9,107 0/0:16,0:16:45.14:0,45,561 0/1:4,2:6:53.33:53,0,136 0/1:4,4:9:86.42:86,0,132 0/0:5,0:5:12.04:0,12,153 1/1:0,7:7:21.06:246,21,0 0/1:5,6:11:99:186,0,154 0/1:2,5:7:53.71:159,0,54 0/0:6,0:6:18.05:0,18,204 1/1:0,5:5:15.05:183,15,0 0/1:2,2:4:61.01:61,0,66 0/1:3,2:5:51.82:52,0,96 12 6562293 . C T 2477.96 . AC=21;AF=0.250;AN=84;BaseQRankSum=-0.576;DP=354;Dels=0.00;FS=8.907;HRun=0;HaplotypeScore=0.3599;InbreedingCoeff=-0.0940;MQ=58.49;MQ0=0;MQRankSum=-0.020;QD=16.41;ReadPosRankSum=-0.434 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,185 0/1:4,4:8:69.41:107,0,69 0/1:1,3:4:25.76:95,0,26 0/0:20,0:20:54.16:0,54,659 0/0:14,0:14:42.13:0,42,523 0/0:10,0:10:27.08:0,27,328 0/0:2,0:2:6.02:0,6,72 0/0:11,0:11:33.10:0,33,416 0/1:7,4:11:88.17:88,0,185 0/1:1,5:6:14.45:157,0,14 0/0:4,0:4:12.03:0,12,135 0/1:4,2:6:50.66:51,0,120 0/0:4,0:4:12.01:0,12,131 0/1:3,5:8:79.49:158,0,79 0/0:16,0:16:48.13:0,48,561 0/0:9,0:9:27.08:0,27,311 0/0:5,0:5:15.04:0,15,179 0/0:6,0:6:18.06:0,18,231 0/0:11,0:12:30.08:0,30,353 0/0:15,0:15:36.10:0,36,415 0/0:13,0:13:36.10:0,36,429 0/0:7,0:7:18.05:0,18,218 0/1:6,9:15:99:290,0,111 1/1:0,8:8:24.07:281,24,0 0/1:5,2:7:59.83:60,0,139 0/1:3,3:6:87.68:88,0,90 0/0:8,0:8:24.05:0,24,267 0/0:5,0:5:15.04:0,15,165 0/0:6,0:6:18.05:0,18,221 0/1:5,4:9:99:119,0,153 0/0:2,0:2:6.02:0,6,78 0/0:16,0:16:48.11:0,48,559 0/1:5,2:7:46.36:46,0,147 0/1:5,4:9:99:114,0,146 0/0:7,0:7:21.06:0,21,238 1/1:0,9:9:27.08:313,27,0 0/1:5,8:14:99:253,0,144 0/1:3,5:8:76.13:142,0,76 0/0:6,0:6:15.04:0,15,171 0/1:1,6:7:15.07:183,0,15 0/1:2,2:4:43.22:59,0,43 0/1:3,2:5:57.53:58,0,58 12 6626639 . C T 7.04 . AC=3;AF=0.036;AN=84;BaseQRankSum=-23.145;DP=3601;Dels=0.00;FS=688.377;HRun=4;HaplotypeScore=1.9391;InbreedingCoeff=-0.0368;MQ=58.93;MQ0=0;MQRankSum=-3.206;QD=0.03;ReadPosRankSum=-15.720 GT:AD:DP:GQ:PL 0/0:60,12:72:64.91:0,65,1690 0/0:61,6:67:99:0,147,1779 0/0:50,16:66:79.11:0,79,1482 0/0:99,17:116:58.29:0,58,2749 0/0:128,22:150:99:0,147,3911 0/0:112,10:122:99:0,239,3135 0/0:92,13:105:99:0,163,2499 0/0:103,13:117:99:0,220,3028 0/0:70,6:76:99:0,167,2268 0/0:64,11:75:99:0,133,1759 0/0:54,6:61:78.16:0,78,1523 0/0:45,7:52:91.15:0,91,1332 0/0:48,5:54:63.98:0,64,1300 0/0:58,8:66:43.64:0,44,1576 0/0:210,36:246:99:0,177,5637 0/1:44,12:56:27.62:28,0,1277 0/0:59,5:64:99:0,144,1688 0/0:66,6:73:90.45:0,90,1848 0/0:93,24:118:99:0,138,2401 0/0:84,11:95:99:0,124,2441 0/1:81,19:102:17.26:17,0,1970 0/0:54,5:59:99:0,104,1510 0/0:130,14:144:99:0,282,3910 0/0:85,10:95:99:0,131,2203 0/0:105,14:119:99:0,229,2940 0/0:87,10:97:99:0,172,2378 0/0:35,6:41:37.93:0,38,985 0/0:75,14:89:99:0,163,2217 0/0:43,5:48:82.07:0,82,1321 0/0:48,11:59:86.99:0,87,1511 0/0:54,9:63:93.24:0,93,1660 0/0:99,8:107:99:0,195,2888 0/0:58,5:63:99:0,138,1674 0/0:60,8:68:96.11:0,96,1694 0/0:78,9:88:99:0,104,2283 0/0:63,8:71:99:0,107,1891 0/1:81,25:107:35.06:35,0,2240 0/0:47,10:58:40.44:0,40,1275 0/0:67,11:78:45.29:0,45,1739 0/0:53,10:63:71.40:0,71,1317 0/0:50,10:60:75.01:0,75,1417 0/0:64,6:70:99:0,130,1791 12 6637845 . T C 76145.90 . AC=61;AF=0.726;AN=84;BaseQRankSum=27.525;DP=3391;Dels=0.00;FS=0.889;HRun=1;HaplotypeScore=2.1129;InbreedingCoeff=-0.2573;MQ=59.12;MQ0=0;MQRankSum=1.782;QD=23.10;ReadPosRankSum=-1.415 GT:AD:DP:GQ:PL 1/1:0,58:58:99:2005,159,0 0/1:35,35:70:99:999,0,906 0/1:39,31:70:99:792,0,1099 0/1:86,75:162:99:2266,0,2233 1/1:0,111:112:99:4045,304,0 1/1:0,85:85:99:3001,226,0 1/1:0,62:62:99:2231,172,0 1/1:0,94:94:99:3216,244,0 0/1:32,27:59:99:837,0,831 0/1:30,26:57:99:797,0,800 1/1:0,50:50:99:1727,135,0 0/1:27,35:62:99:1053,0,707 1/1:1,57:58:99:1921,123,0 0/1:34,32:66:99:911,0,962 1/1:0,207:207:99:6721,530,0 1/1:0,51:51:99:1841,147,0 1/1:0,70:70:99:2514,199,0 1/1:0,48:48:99:1720,135,0 1/1:0,111:111:99:3726,301,0 1/1:0,105:105:99:3346,265,0 0/1:61,44:105:99:1331,0,1668 1/1:0,85:86:99:2731,214,0 0/1:77,61:138:99:1778,0,2087 0/0:94,0:94:99:0,238,2947 0/1:44,46:90:99:1387,0,1101 0/1:56,32:88:99:824,0,1549 1/1:0,60:60:99:2065,165,0 1/1:0,69:69:99:2303,181,0 1/1:0,57:57:99:1854,150,0 0/1:32,31:63:99:865,0,829 1/1:0,53:53:99:1891,150,0 0/1:48,42:90:99:1245,0,1355 0/1:54,53:107:99:1412,0,1444 0/1:35,28:63:99:741,0,1012 1/1:0,68:68:99:2290,181,0 0/1:45,41:86:99:1119,0,1328 0/1:64,60:125:99:1603,0,1681 0/1:28,40:68:99:1167,0,744 1/1:0,53:53:99:1801,141,0 0/1:38,22:60:99:637,0,1094 0/1:27,20:47:99:549,0,753 0/1:32,31:63:99:882,0,831 12 6637941 . C T 6495.47 . AC=12;AF=0.143;AN=84;BaseQRankSum=5.728;DP=2147;Dels=0.00;FS=5.557;HRun=0;HaplotypeScore=1.9744;InbreedingCoeff=0.4167;MQ=59.02;MQ0=0;MQRankSum=0.882;QD=19.99;ReadPosRankSum=0.349 GT:AD:DP:GQ:PL 0/0:42,1:44:79.05:0,79,1200 0/0:44,0:44:99:0,126,1377 0/0:35,0:36:99:0,102,1131 0/0:89,0:89:99:0,244,2852 0/0:74,0:74:99:0,214,2504 0/0:52,0:52:99:0,138,1623 0/0:53,0:53:99:0,141,1636 0/0:54,0:54:99:0,144,1668 0/0:30,0:30:81.18:0,81,885 0/0:49,0:49:99:0,138,1495 0/1:17,15:32:99:374,0,471 0/0:43,0:43:99:0,114,1274 0/1:13,18:32:99:471,0,279 0/0:35,0:35:99:0,99,1096 0/0:127,0:127:99:0,343,3752 0/0:37,0:37:93.24:0,93,1032 0/0:43,0:43:99:0,126,1377 0/0:29,0:29:84.19:0,84,932 0/0:75,0:77:99:0,195,2095 0/0:78,0:78:99:0,199,2268 0/0:67,0:67:99:0,195,2110 0/0:47,1:49:97.95:0,98,1379 0/0:84,0:84:99:0,247,2962 0/0:57,1:58:99:0,131,1907 0/0:59,0:59:99:0,165,1993 0/0:52,0:52:99:0,138,1603 1/1:0,28:28:84.23:973,84,0 1/1:0,43:43:99:1453,123,0 1/1:2,32:35:62.84:1049,63,0 0/1:22,22:44:99:595,0,513 0/1:18,19:37:99:530,0,401 0/0:81,0:81:99:0,217,2459 0/0:59,0:60:99:0,162,1746 0/0:41,0:41:99:0,117,1315 0/1:23,19:42:99:507,0,651 0/0:38,0:38:99:0,105,1124 0/0:77,0:78:99:0,207,2239 0/0:38,0:38:99:0,99,1082 0/0:48,0:48:99:0,132,1461 0/0:32,0:32:90.21:0,90,986 0/1:13,19:32:99:545,0,324 0/0:43,0:43:99:0,120,1283 12 6639981 . C G 36390.13 . AC=24;AF=0.286;AN=84;BaseQRankSum=2.846;DP=3443;Dels=0.00;FS=2.589;HRun=0;HaplotypeScore=5.0263;InbreedingCoeff=0.1830;MQ=58.56;MQ0=0;MQRankSum=12.214;QD=21.41;ReadPosRankSum=1.711 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2747,226,0 0/1:31,29:60:99:867,0,874 0/0:61,0:61:99:0,175,2104 0/0:143,0:143:99:0,400,5194 0/0:108,0:108:99:0,310,4067 1/1:0,116:116:99:4278,325,0 0/1:43,51:94:99:1618,0,1375 1/1:0,103:103:99:3770,286,0 0/1:36,36:72:99:1139,0,1008 0/0:51,0:51:99:0,141,1728 0/1:33,39:72:99:1119,0,917 0/0:56,0:57:99:0,159,1971 0/0:61,0:61:99:0,178,2185 0/0:71,0:71:99:0,196,2391 0/1:96,122:218:99:3640,0,2620 0/1:21,18:39:99:522,0,647 0/0:70,0:70:99:0,193,2367 0/0:54,0:54:99:0,156,1927 0/1:44,56:100:99:1718,0,1185 1/1:0,111:111:99:3825,316,0 0/0:98,0:98:99:0,253,3096 0/0:61,0:61:99:0,178,2173 0/0:145,0:145:99:0,412,5388 0/0:90,0:90:99:0,253,3275 0/0:114,0:114:99:0,319,4206 0/1:51,53:104:99:1615,0,1524 0/0:41,0:41:99:0,114,1372 0/0:64,0:64:99:0,181,2195 0/0:61,0:61:99:0,172,2111 0/0:57,0:57:99:0,159,1917 0/0:63,0:63:99:0,172,2087 0/1:41,52:94:99:1603,0,1052 0/0:85,0:85:99:0,244,2922 0/1:43,35:79:99:1003,0,1204 0/1:27,34:61:99:980,0,794 0/0:72,0:72:99:0,199,2455 0/1:43,52:95:99:1474,0,1080 0/0:70,0:70:99:0,202,2479 1/1:0,60:60:99:2167,175,0 0/1:40,40:80:99:1275,0,1099 0/0:42,3:45:20.50:0,21,1411 0/1:27,34:61:99:1029,0,749 12 6646320 . T C 17922.91 . AC=26;AF=0.310;AN=84;BaseQRankSum=-3.725;DP=2066;Dels=0.00;FS=1.357;HRun=0;HaplotypeScore=1.1933;InbreedingCoeff=0.1088;MQ=57.90;MQ0=9;MQRankSum=2.250;QD=16.70;ReadPosRankSum=0.172 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1615,135,0 0/1:19,17:36:99:462,0,517 0/0:38,0:38:93.28:0,93,1157 0/0:75,0:75:99:0,196,2401 0/0:82,0:82:99:0,229,2824 1/1:0,46:46:99:1592,126,0 0/1:27,18:45:99:513,0,810 1/1:1,45:46:79.11:1403,79,0 0/1:21,15:36:99:379,0,576 0/0:55,0:55:99:0,159,1860 0/1:25,29:54:99:789,0,668 0/0:41,0:41:99:0,105,1271 0/0:40,0:40:99:0,108,1289 0/0:67,0:67:99:0,199,2331 0/1:72,58:130:99:1423,0,1844 0/1:26,27:53:99:664,0,715 0/0:45,0:45:99:0,126,1506 0/0:43,0:43:99:0,117,1397 0/1:24,25:49:99:624,0,629 1/1:0,60:60:99:1844,159,0 0/0:37,0:37:99:0,105,1265 0/0:34,0:34:87.25:0,87,1052 0/0:81,0:81:99:0,208,2586 0/0:40,0:40:99:0,105,1304 0/1:30,27:57:99:750,0,813 0/1:21,16:37:99:415,0,596 0/0:32,0:32:87.27:0,87,1064 0/0:43,1:44:91.59:0,92,1453 0/0:35,0:35:99:0,105,1252 0/0:42,0:42:99:0,114,1349 0/1:22,13:35:99:317,0,625 0/1:32,34:66:99:860,0,853 0/0:36,0:36:99:0,99,1167 0/1:17,18:35:99:510,0,498 0/1:24,28:52:99:812,0,567 0/0:40,0:40:99:0,117,1387 0/1:26,22:48:99:476,0,735 0/0:45,0:45:99:0,126,1508 1/1:0,38:38:99:1205,102,0 0/1:18,23:41:99:626,0,492 0/0:41,0:41:99:0,114,1362 0/1:33,25:58:99:645,0,822 12 6691818 . C A 924.74 . AC=6;AF=0.071;AN=84;BaseQRankSum=-35.136;DP=8786;DS;Dels=0.00;FS=2174.967;HRun=2;HaplotypeScore=2.5493;InbreedingCoeff=-0.0849;MQ=59.22;MQ0=0;MQRankSum=-1.916;QD=0.62;ReadPosRankSum=-23.404 GT:AD:DP:GQ:PL 0/0:163,42:205:99:0,283,4487 0/0:149,55:205:99:0,138,4134 0/0:150,45:196:99:0,341,4513 0/0:162,88:250:2.42:1,0,3982 0/0:158,92:250:97.83:0,98,4164 0/1:157,93:250:37.62:38,0,3446 0/0:182,68:250:99:0,226,4786 0/0:159,91:250:99:0,174,4368 0/0:136,40:176:94.70:0,95,3516 0/0:132,40:172:99:0,236,3921 0/0:141,34:175:99:0,249,4091 0/0:136,44:181:99:0,121,3916 0/0:121,33:154:99:0,121,3413 0/0:128,42:170:99:0,205,3496 0/1:121,128:249:99:253,0,2586 0/0:126,54:180:99:0,148,3487 0/0:145,49:194:99:0,242,4319 0/0:154,51:205:99:0,175,4122 0/1:146,104:250:99:349,0,3472 0/0:168,82:250:99:0,143,3845 0/1:171,79:250:98.76:99,0,4076 0/0:197,53:250:99:0,203,5114 0/1:133,117:250:99:121,0,3082 0/0:183,67:250:99:0,302,4979 0/0:158,80:238:99:0,133,3647 0/0:185,64:250:99:0,350,5063 0/0:117,34:151:99:0,144,3332 0/0:141,45:186:99:0,250,4024 0/0:115,40:155:99:0,108,3150 0/0:129,57:187:99:0,174,3688 0/0:140,38:178:99:0,226,3900 0/0:187,63:250:99:0,314,4581 0/0:183,49:233:99:0,269,4743 0/0:152,37:189:36.34:0,36,3781 0/0:140,36:176:99:0,217,3855 0/0:161,50:212:99:0,186,4432 0/1:162,88:250:99:170,0,4076 0/0:161,42:203:99:0,287,4713 0/0:133,31:166:99:0,228,3772 0/0:149,43:192:99:0,182,4273 0/0:109,43:152:69.42:0,69,2692 0/0:163,43:206:99:0,171,4558 12 6707104 . C T 3470.14 . AC=2;AF=0.024;AN=84;BaseQRankSum=-11.761;DP=6909;DS;Dels=0.00;FS=0.325;HRun=1;HaplotypeScore=2.7798;InbreedingCoeff=-0.0244;MQ=59.42;MQ0=0;MQRankSum=-0.835;QD=13.77;ReadPosRankSum=-0.776 GT:AD:DP:GQ:PL 0/0:150,0:150:99:0,385,4935 0/0:121,0:121:99:0,322,4110 0/0:137,0:137:99:0,373,4725 0/0:250,0:250:99:0,668,8800 0/0:249,1:250:99:0,645,8961 0/0:249,0:249:99:0,665,8834 0/0:250,0:250:99:0,629,8361 0/0:250,0:250:99:0,644,8555 0/0:146,0:147:99:0,400,5008 0/0:119,0:119:99:0,325,4072 0/0:130,0:130:99:0,340,4344 0/0:137,0:137:99:0,376,4764 0/0:113,0:113:99:0,307,3814 0/0:114,0:114:99:0,316,3974 0/0:248,1:250:99:0,663,8487 0/0:114,0:114:99:0,319,4020 0/0:160,0:160:99:0,439,5563 0/0:124,0:124:99:0,337,4256 0/0:193,0:195:99:0,554,6734 0/0:198,0:199:99:0,527,6655 0/0:232,0:232:99:0,596,7500 0/0:132,0:132:99:0,346,4381 0/0:250,0:250:99:0,698,9151 0/0:233,0:233:99:0,611,8121 0/0:250,0:250:99:0,662,8863 0/0:217,0:217:99:0,563,7487 0/0:96,0:96:99:0,271,3442 0/0:119,0:119:99:0,334,4169 0/0:114,1:115:99:0,298,3815 0/1:51,59:110:99:1608,0,1481 0/0:113,0:113:99:0,331,4140 0/0:214,0:215:99:0,563,7227 0/1:71,71:142:99:1862,0,2010 0/0:128,0:128:99:0,340,4307 0/0:131,0:131:99:0,355,4528 0/0:135,0:136:99:0,364,4611 0/0:206,0:207:99:0,551,6737 0/0:129,0:129:99:0,352,4451 0/0:120,0:120:99:0,340,4272 0/0:142,0:143:99:0,388,4881 0/0:120,0:120:99:0,334,4230 0/0:109,0:109:99:0,295,3710 12 6711144 . ATCC A 2459.95 . AC=21;AF=0.250;AN=84;BaseQRankSum=-4.936;DP=3645;DS;FS=0.607;HRun=0;HaplotypeScore=411.3985;InbreedingCoeff=-0.3293;MQ=59.48;MQ0=1;MQRankSum=2.535;QD=1.29;ReadPosRankSum=-20.442 GT:AD:DP:GQ:PL 0/1:82,0:82:90.13:90,0,1114 0/1:75,0:75:42.13:42,0,1716 0/0:75,0:75:99:0,147,2546 0/1:101,12:113:99:178,0,2306 0/1:88,10:98:99:113,0,2102 0/1:84,5:84:99:102,0,1035 0/1:68,7:75:99:193,0,1023 0/0:88,2:87:50.12:0,50,2180 0/1:67,2:68:73.63:74,0,1397 0/0:76,0:76:99:0,141,2503 0/1:63,0:63:54.89:55,0,790 0/0:76,1:77:69.84:0,70,2393 0/1:52,1:53:4.86:5,0,1231 0/0:78,0:78:99:0,168,2966 0/1:188,9:198:99:394,0,3244 0/0:75,0:75:18.82:0,19,1590 0/0:71,0:71:99:0,144,2508 0/0:72,0:72:99:0,113,2479 0/1:116,12:128:58.06:58,0,2916 0/1:124,1:125:99:177,0,1413 0/0:104,0:104:99:0,208,3722 0/0:72,0:71:99:0,135,2437 0/0:100,1:101:99:0,144,3351 0/0:67,1:62:80.54:0,81,2057 0/1:84,5:86:83.57:84,0,1737 0/0:74,4:78:41.66:0,42,2078 0/1:63,1:64:46.55:47,0,926 0/1:92,0:92:99:278,0,1169 0/1:65,0:65:99:148,0,949 0/1:85,1:86:99:107,0,1945 0/1:64,0:63:99:264,0,811 0/0:140,2:142:99:0,134,3965 0/0:97,0:97:99:0,213,3695 0/1:67,0:67:56.19:56,0,1385 0/1:90,1:90:36.75:37,0,1929 0/0:81,0:81:99:0,130,2544 0/1:114,13:127:99:141,0,2552 0/0:79,0:79:99:0,129,2272 0/0:61,0:61:64.22:0,64,1620 0/0:66,0:66:24.39:0,24,1456 0/0:80,0:80:13.81:0,14,1989 0/0:89,0:89:72.28:0,72,2317 12 6711147 . C A 48041.99 . AC=38;AF=0.452;AN=84;BaseQRankSum=-34.057;DP=3543;DS;Dels=0.03;FS=0.754;HRun=0;HaplotypeScore=8.0823;InbreedingCoeff=0.0389;MQ=59.48;MQ0=1;MQRankSum=0.671;QD=19.07;ReadPosRankSum=0.957 GT:AD:DP:GQ:PL 1/1:3,78:81:99:2605,192,0 0/1:31,43:74:99:1163,0,874 0/0:75,0:75:99:0,211,2670 0/1:40,56:96:99:1515,0,1267 0/1:43,44:87:99:1124,0,1486 1/1:1,77:78:99:2622,178,0 1/1:0,65:65:99:2301,190,0 0/1:38,43:81:99:1234,0,1181 0/1:28,37:65:99:1084,0,856 0/0:70,0:70:99:0,202,2527 1/1:0,66:66:99:2179,186,0 0/0:70,2:72:99:0,126,2381 0/1:19,27:46:99:817,0,548 0/0:76,0:76:99:0,214,2706 0/1:93,80:173:99:2144,0,2726 0/1:36,34:70:99:953,0,923 0/0:69,0:69:99:0,202,2548 0/0:72,1:73:99:0,178,2644 0/1:59,54:113:99:1523,0,1666 1/1:1,120:121:99:3942,305,0 0/0:105,0:105:99:0,292,3657 0/0:71,0:71:99:0,205,2595 0/0:95,0:95:99:0,268,3582 0/0:66,0:66:99:0,184,2479 0/1:38,43:81:99:1269,0,1213 0/1:41,31:72:99:899,0,1289 1/1:0,63:63:99:2087,175,0 1/1:1,91:92:99:2966,231,0 1/1:1,63:64:99:2109,178,0 0/1:45,39:84:99:1018,0,1336 1/1:1,63:64:99:2153,184,0 0/1:80,58:138:99:1543,0,2285 0/0:96,0:96:99:0,271,3356 0/1:25,41:66:99:1188,0,767 0/1:43,43:86:99:1155,0,1252 0/0:77,1:78:99:0,223,2823 0/1:55,59:114:99:1733,0,1480 0/0:75,0:75:99:0,214,2673 0/1:27,33:60:99:993,0,821 0/1:27,36:63:99:1035,0,794 0/1:35,44:79:99:1280,0,982 0/1:41,48:89:99:1407,0,1223 12 6754491 . A G 12.99 . AC=2;AF=0.024;AN=84;BaseQRankSum=-15.733;DP=2255;Dels=0.00;FS=721.180;HRun=3;HaplotypeScore=1.6694;InbreedingCoeff=-0.0480;MQ=59.00;MQ0=0;MQRankSum=0.345;QD=0.12;ReadPosRankSum=-15.124 GT:AD:DP:GQ:PL 0/0:31,16:47:89.63:0,90,1046 0/0:34,16:50:43.18:0,43,1105 0/0:30,14:44:80.27:0,80,919 0/1:40,24:64:45.28:45,0,1236 0/0:55,23:78:99:0,100,1873 0/0:53,12:65:99:0,143,1780 0/0:39,10:49:77.62:0,78,1197 0/0:34,18:52:37.11:0,37,1038 0/0:47,11:58:10.92:0,11,1279 0/0:42,10:52:80.90:0,81,1282 0/0:27,8:35:78.23:0,78,926 0/0:32,9:41:55.92:0,56,1006 0/0:24,10:34:0.58:8,0,696 0/0:48,4:52:94.13:0,94,1468 0/0:122,34:156:99:0,268,4025 0/0:27,12:39:19.20:0,19,796 0/0:32,13:45:33.63:0,34,976 0/0:35,8:43:69.79:0,70,1151 0/0:44,12:56:95.95:0,96,1487 0/0:57,16:73:99:0,147,1670 0/0:44,11:55:70.25:0,70,1459 0/0:48,13:61:99:0,100,1427 0/0:57,25:82:99:0,107,1939 0/0:30,11:41:84.26:0,84,1039 0/0:43,14:57:97.64:0,98,1387 0/0:33,15:48:6.56:0,7,1002 0/0:22,9:31:16.20:0,16,640 0/1:31,16:47:27.76:28,0,918 0/0:32,7:39:48.57:0,49,883 0/0:34,12:46:1.67:3,0,988 0/0:34,5:39:33.14:0,33,972 0/0:65,20:85:99:0,103,1984 0/0:50,10:60:99:0,132,1540 0/0:34,15:49:49.95:0,50,1109 0/0:31,16:47:37.82:0,38,937 0/0:28,14:42:52.53:0,53,870 0/0:51,20:71:77.88:0,78,1622 0/0:35,12:47:63.63:0,64,1023 0/0:28,14:42:51.32:0,51,849 0/0:36,12:48:62.64:0,63,1076 0/0:35,10:45:99:0,105,1224 0/0:36,4:40:93.25:0,93,1099 12 6804697 . G A 830.61 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.951;DP=1665;Dels=0.00;FS=0.808;HRun=2;HaplotypeScore=1.1744;InbreedingCoeff=-0.0244;MQ=59.18;MQ0=0;MQRankSum=0.429;QD=14.57;ReadPosRankSum=-0.873 GT:AD:DP:GQ:PL 0/0:30,0:30:81.18:0,81,866 0/0:25,0:25:69.18:0,69,773 0/0:30,0:31:90.20:0,90,967 0/0:90,0:90:99:0,265,3082 0/0:81,0:81:99:0,226,2667 0/0:71,0:71:99:0,202,2375 0/0:48,0:48:99:0,126,1549 0/0:47,0:47:99:0,138,1679 0/0:32,0:32:90.23:0,90,1010 0/0:20,0:20:42.11:0,42,502 0/0:29,0:29:81.19:0,81,898 0/0:30,0:30:78.18:0,78,872 0/0:14,0:14:42.10:0,42,461 0/0:33,0:33:96.24:0,96,1063 0/0:79,0:79:99:0,223,2444 0/0:49,0:49:99:0,138,1507 0/0:28,0:28:78.17:0,78,843 0/0:19,0:19:51.13:0,51,560 0/0:48,0:48:99:0,129,1431 0/0:61,0:61:99:0,159,1870 0/0:57,0:57:99:0,156,1747 0/0:39,0:39:99:0,105,1191 0/0:94,0:94:99:0,271,3214 0/0:37,0:37:99:0,111,1327 0/0:66,0:66:99:0,180,2125 0/0:37,0:37:99:0,102,1213 0/0:25,0:25:72.19:0,72,790 0/0:32,0:32:84.21:0,84,935 0/0:20,0:20:54.13:0,54,614 0/1:16,19:35:99:562,0,394 0/1:10,12:22:99:331,0,282 0/0:40,0:40:96.26:0,96,1123 0/0:37,1:38:68.27:0,68,1107 0/0:28,0:28:78.21:0,78,879 0/0:25,0:25:72.20:0,72,813 0/0:27,0:27:81.21:0,81,901 0/0:41,0:41:96.23:0,96,1061 0/0:25,0:25:69.15:0,69,753 0/0:29,0:29:87.21:0,87,937 0/0:27,0:27:81.20:0,81,877 0/0:23,0:23:60.15:0,60,667 0/0:33,0:33:90.24:0,90,1034 12 6804748 . C G 96.78 . AC=4;AF=0.048;AN=84;BaseQRankSum=-13.227;DP=1811;Dels=0.00;FS=603.768;HRun=1;HaplotypeScore=1.3719;InbreedingCoeff=-0.1011;MQ=58.67;MQ0=0;MQRankSum=-0.418;QD=0.60;ReadPosRankSum=-13.243 GT:AD:DP:GQ:PL 0/0:19,9:28:15.64:0,16,516 0/0:21,16:37:2.32:2,0,451 0/0:14,7:21:2.50:0,3,336 0/0:59,47:106:80.01:0,80,1618 0/0:58,44:102:42.26:0,42,1628 0/0:45,30:75:61.04:0,61,1173 0/0:40,31:72:98.07:0,98,1194 0/1:37,21:59:8.02:8,0,631 0/1:14,8:22:27.48:27,0,370 0/0:15,10:25:14.85:0,15,506 0/0:13,9:22:7.41:0,7,347 0/0:20,9:29:21.53:0,22,564 0/0:17,13:30:5.15:0,5,445 0/0:14,9:23:30.09:0,30,372 0/0:58,31:89:56.11:0,56,1550 0/0:35,25:60:2.01:2,0,929 0/0:18,10:28:33.11:0,33,416 0/0:22,8:30:48.08:0,48,550 0/0:22,14:36:22.73:0,23,546 0/0:51,16:67:99:0,125,1540 0/1:28,18:46:99:104,0,746 0/0:32,20:52:29.99:0,30,860 0/0:64,52:116:86.87:0,87,1636 0/0:31,22:53:42.73:0,43,887 0/0:52,22:74:78.21:0,78,1362 0/0:23,20:43:19.61:0,20,593 0/0:14,9:23:5.52:0,6,378 0/0:21,6:27:46.43:0,46,538 0/0:11,2:13:27.08:0,27,331 0/0:21,12:33:1.74:3,0,515 0/0:19,11:30:15.65:0,16,526 0/0:44,14:59:99:0,102,1269 0/0:33,10:44:46.67:0,47,871 0/0:14,3:17:12.43:0,12,412 0/0:19,13:33:29.44:0,29,555 0/0:15,9:24:36.11:0,36,445 0/0:23,10:33:4.63:0,5,715 0/1:25,10:35:35.62:36,0,583 0/0:19,10:29:0.92:0,1,535 0/0:21,5:26:39.12:0,39,469 0/0:15,11:26:30.09:0,30,371 0/0:10,4:14:8.39:0,8,326 12 6839883 . G C 233.81 . AC=12;AF=0.143;AN=84;BaseQRankSum=-9.470;DP=1516;Dels=0.00;FS=137.905;HRun=2;HaplotypeScore=0.9846;InbreedingCoeff=-0.1905;MQ=57.28;MQ0=1;MQRankSum=1.421;QD=0.51;ReadPosRankSum=-9.809 GT:AD:DP:GQ:PL 0/0:17,10:27:1.08:0,1,225 0/1:27,7:34:15.54:16,0,410 0/0:11,1:12:24.03:0,24,232 0/1:42,17:60:9.72:10,0,616 0/0:32,6:38:57.09:0,57,576 0/0:43,5:48:81.17:0,81,879 0/0:26,3:29:14.90:0,15,323 0/0:39,5:45:34.74:0,35,651 0/0:31,6:37:17.53:0,18,481 0/0:31,7:38:31.42:0,31,520 0/0:27,8:35:15.71:0,16,527 0/0:17,11:28:27.05:0,27,277 0/0:22,4:26:24.36:0,24,433 0/0:30,4:34:27.43:0,27,503 0/1:63,26:89:9.20:9,0,961 0/0:20,7:27:36.08:0,36,386 0/1:14,3:17:51.56:52,0,109 0/0:22,4:26:42.01:0,42,404 0/1:27,8:35:62.18:62,0,394 0/0:61,7:68:93.97:0,94,1265 0/1:32,11:43:29.04:29,0,452 0/0:34,5:39:43.40:0,43,633 0/0:42,14:56:42.79:0,43,726 0/0:36,8:44:59.91:0,60,636 0/0:28,2:30:51.08:0,51,541 0/0:30,8:38:63.10:0,63,642 0/0:16,6:22:8.38:0,8,288 0/0:29,2:31:60.08:0,60,623 0/1:25,12:37:53.44:53,0,431 0/0:17,5:22:6.36:0,6,264 0/1:19,5:24:19.03:19,0,321 0/0:51,7:58:62.81:0,63,1052 0/0:25,4:30:42.07:0,42,437 0/1:31,3:34:6.08:6,0,430 0/1:19,7:27:20.32:20,0,230 0/1:22,5:27:34.84:35,0,377 0/0:34,9:43:5.81:0,6,535 0/0:28,6:34:63.11:0,63,666 0/0:18,8:26:1.08:6,0,290 0/1:22,7:29:56.50:57,0,376 0/0:26,5:31:12.82:0,13,450 0/0:31,7:38:18.47:0,18,435 12 6839913 . C T 752.86 . 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T C 71149.78 . AC=54;AF=0.643;AN=84;BaseQRankSum=23.287;DP=3924;DS;Dels=0.00;FS=16.233;HRun=2;HaplotypeScore=1.8608;InbreedingCoeff=-0.0382;MQ=59.35;MQ0=0;MQRankSum=1.440;QD=20.33;ReadPosRankSum=-1.045 GT:AD:DP:GQ:PL 0/1:46,28:74:99:820,0,1261 0/1:31,22:53:99:606,0,850 0/1:28,27:55:99:742,0,757 0/1:121,129:250:99:3702,0,3388 1/1:0,180:180:99:6280,464,0 1/1:1,172:173:99:5980,416,0 1/1:0,113:113:99:3925,292,0 0/1:97,99:196:99:2831,0,2587 1/1:0,62:62:99:1988,159,0 1/1:0,54:54:99:1825,147,0 1/1:1,50:52:99:1730,104,0 0/0:71,0:71:99:0,193,2353 0/1:20,21:41:99:672,0,505 0/1:36,23:59:99:588,0,1034 0/1:117,103:220:99:2516,0,3115 1/1:0,56:56:99:1949,162,0 0/0:65,0:65:99:0,184,2213 1/1:0,45:45:99:1601,129,0 1/1:0,97:97:99:3081,256,0 1/1:0,110:110:99:3603,286,0 0/1:49,55:104:99:1331,0,1309 0/1:41,38:79:99:1067,0,1097 0/1:139,106:245:99:3108,0,3854 0/0:157,0:158:99:0,427,5331 0/1:95,77:172:99:2046,0,2860 0/1:83,67:150:99:1848,0,2296 1/1:0,43:43:99:1502,120,0 0/1:38,25:63:99:639,0,1075 0/1:20,21:41:99:650,0,586 1/1:1,58:59:99:1818,117,0 1/1:0,51:51:99:1776,147,0 0/1:65,39:104:99:1085,0,1709 0/1:51,47:98:99:1309,0,1344 0/0:68,0:68:99:0,193,2320 0/1:23,31:54:99:843,0,620 0/0:62,0:62:99:0,169,2080 0/1:75,33:108:99:891,0,2002 0/1:30,32:63:99:891,0,770 1/1:0,40:40:99:1458,117,0 1/1:0,41:41:99:1438,117,0 1/1:3,41:44:15:1258,15,0 1/1:0,51:51:99:1751,141,0 12 6926363 . T C 43628.41 . AC=53;AF=0.631;AN=84;BaseQRankSum=19.322;DP=1925;Dels=0.00;FS=5.476;HRun=0;HaplotypeScore=0.8712;InbreedingCoeff=0.0286;MQ=59.43;MQ0=0;MQRankSum=1.212;QD=26.31;ReadPosRankSum=-1.622 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,114,1411 0/1:13,19:32:99:539,0,388 1/1:0,31:31:87.27:1099,87,0 1/1:0,88:88:99:3401,253,0 0/1:39,34:73:99:1137,0,1218 1/1:0,58:58:99:2173,160,0 1/1:0,36:36:99:1366,99,0 1/1:0,42:42:99:1540,114,0 1/1:0,40:40:99:1440,111,0 1/1:0,36:36:99:1337,105,0 0/1:21,15:36:99:401,0,669 0/1:20,20:40:99:614,0,607 0/0:32,1:33:59.30:0,59,1095 1/1:0,37:37:99:1328,102,0 1/1:0,142:142:99:4771,367,0 0/1:20,15:35:99:479,0,541 1/1:0,31:31:90.29:1159,90,0 0/1:23,19:42:99:580,0,685 0/1:29,35:64:99:1039,0,780 0/0:71,0:71:99:0,187,2336 1/1:0,73:73:99:2555,202,0 1/1:0,31:31:87.27:1085,87,0 1/1:0,63:63:99:2579,190,0 0/1:21,28:49:99:973,0,606 0/0:51,0:51:99:0,141,1809 0/1:20,30:53:99:991,0,604 0/1:18,15:33:99:476,0,551 0/1:15,19:34:99:607,0,364 0/1:14,7:21:99:206,0,414 0/1:23,25:48:99:762,0,615 1/1:0,39:39:99:1339,102,0 1/1:0,56:56:99:2103,166,0 0/0:29,0:29:81.24:0,81,970 1/1:0,33:33:96.30:1212,96,0 1/1:0,32:32:87.26:1099,87,0 0/1:20,15:35:99:441,0,586 0/1:24,29:53:99:762,0,676 0/1:22,19:41:99:567,0,552 0/1:14,24:38:99:788,0,383 0/1:19,12:31:99:325,0,596 0/0:41,0:41:99:0,108,1310 0/1:20,12:32:99:357,0,581 12 6946232 . G A 305.98 . 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G T 9092.61 . AC=27;AF=0.321;AN=84;BaseQRankSum=-8.079;DP=1092;Dels=0.00;FS=19.754;HRun=0;HaplotypeScore=1.0798;InbreedingCoeff=-0.2554;MQ=59.08;MQ0=0;MQRankSum=1.041;QD=15.79;ReadPosRankSum=-1.155 GT:AD:DP:GQ:PL 0/1:7,9:16:99:272,0,207 0/1:9,9:18:99:273,0,249 0/1:12,10:22:99:281,0,287 0/1:40,28:68:99:725,0,1281 0/0:39,0:39:99:0,111,1436 1/1:0,32:32:96.30:1196,96,0 0/1:11,12:23:99:359,0,334 0/1:11,18:29:99:518,0,288 0/1:10,13:23:99:338,0,292 0/1:10,8:18:99:203,0,303 0/0:19,0:19:51.16:0,51,645 0/1:3,10:13:68.40:301,0,68 0/0:16,0:16:42.13:0,42,537 0/1:15,7:22:99:195,0,361 0/0:66,0:66:99:0,171,2090 0/0:19,0:19:48.12:0,48,559 0/1:4,13:17:99:369,0,103 0/0:17,0:17:51.16:0,51,624 0/0:40,1:41:99:0,99,1213 0/1:23,16:40:99:445,0,648 0/0:44,0:44:99:0,111,1394 0/0:34,0:34:81.22:0,81,1003 0/1:29,29:58:99:863,0,892 0/0:23,0:23:63.21:0,63,855 0/0:38,0:38:99:0,105,1417 0/0:28,1:29:38.24:0,38,881 0/1:3,5:8:73.91:152,0,74 0/1:6,9:15:99:267,0,148 0/1:8,9:17:99:259,0,229 0/1:3,5:8:92.31:152,0,92 1/1:0,17:17:51.13:587,51,0 0/0:34,0:34:84.25:0,84,1066 0/1:19,9:28:99:200,0,533 0/0:20,0:20:57.18:0,57,717 0/1:7,4:11:99:103,0,211 0/0:22,0:22:63.17:0,63,761 0/0:34,0:34:90.28:0,90,1110 0/1:7,11:18:99:301,0,162 0/0:21,0:21:54.16:0,54,649 0/1:11,8:19:99:230,0,335 0/1:12,9:21:99:218,0,339 0/1:5,10:15:99:286,0,140 12 6946979 . C T 198.23 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.258;DP=594;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.6433;InbreedingCoeff=-0.0282;MQ=58.74;MQ0=0;MQRankSum=-0.191;QD=11.66;ReadPosRankSum=0.875 GT:AD:DP:GQ:PL 0/0:15,0:15:39.06:0,39,404 0/0:14,0:14:39.04:0,39,404 0/0:10,0:10:30.08:0,30,338 0/0:26,0:26:66.17:0,66,797 0/0:30,0:30:75.19:0,75,897 0/0:19,0:19:42.12:0,42,516 0/0:15,0:15:39.12:0,39,490 0/0:13,0:13:27.06:0,27,293 0/1:4,6:10:95.22:161,0,95 0/0:7,0:7:21.06:0,21,243 0/1:3,4:7:61.33:99,0,61 0/0:11,0:11:33.09:0,33,368 0/0:13,0:13:33.07:0,33,366 0/0:10,0:10:27.06:0,27,290 0/0:43,0:43:99:0,105,1229 0/0:10,0:10:30.09:0,30,350 0/0:13,0:13:27.07:0,27,328 0/0:10,0:10:30.07:0,30,325 0/0:20,0:20:48.12:0,48,552 0/0:26,0:26:72.20:0,72,837 0/0:15,0:16:39.11:0,39,443 0/0:11,0:11:33.09:0,33,387 0/0:28,0:28:72.19:0,72,867 0/0:20,0:20:57.13:0,57,648 0/0:15,0:15:42.13:0,42,510 0/0:11,0:11:33.08:0,33,374 0/0:9,0:9:24.06:0,24,281 0/0:7,0:7:12.03:0,12,128 0/0:9,0:9:27.08:0,27,313 0/0:12,0:12:27.06:0,27,290 0/0:13,0:13:30.06:0,30,320 0/0:23,0:23:54.15:0,54,655 0/0:14,0:14:39.09:0,39,428 0/0:7,0:7:21.04:0,21,217 0/0:8,0:8:24.03:0,24,245 0/0:5,0:5:12.04:0,12,145 0/0:13,0:13:33.08:0,33,374 0/0:6,0:6:15.04:0,15,173 0/0:4,0:4:9.03:0,9,112 0/0:11,0:11:33.09:0,33,384 0/0:13,0:13:30.09:0,30,359 0/0:17,0:17:42.10:0,42,473 12 6947196 . C T 95.51 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.656;DP=558;Dels=0.00;FS=4.937;HRun=0;HaplotypeScore=0.4798;InbreedingCoeff=-0.0150;MQ=58.99;MQ0=0;MQRankSum=0.244;QD=9.55;ReadPosRankSum=0.083 GT:AD:DP:GQ:PL 0/0:12,0:12:30.07:0,30,349 0/0:4,0:4:12.03:0,12,136 0/0:8,0:8:24.06:0,24,267 0/0:20,0:20:54.17:0,54,672 0/0:13,0:13:39.12:0,39,468 0/0:10,0:10:27.08:0,27,339 0/0:11,0:11:27.08:0,27,338 0/0:11,0:11:30.09:0,30,373 0/0:12,0:12:30.08:0,30,333 0/0:10,0:10:24.07:0,24,289 0/0:11,0:11:33.09:0,33,370 0/0:8,0:8:21.05:0,21,230 0/0:10,0:10:27.05:0,27,302 0/0:16,0:16:39.10:0,39,459 0/0:46,0:46:99:0,126,1459 0/0:11,0:11:30.09:0,30,352 0/0:12,0:12:36.10:0,36,395 0/0:3,0:3:9.03:0,9,106 0/0:23,0:23:54.15:0,54,635 0/0:17,0:17:45.13:0,45,513 0/0:23,0:23:66.17:0,66,744 0/0:19,0:19:48.12:0,48,536 0/0:12,0:12:30.09:0,30,376 0/0:11,0:11:24.08:0,24,313 0/0:14,0:14:39.12:0,39,490 0/0:16,0:16:39.12:0,39,493 0/0:13,0:13:27.05:0,27,328 0/0:13,0:13:39.10:0,39,437 0/0:11,0:11:30.09:0,30,359 0/0:7,0:7:18.05:0,18,206 0/0:10,0:10:30.08:0,30,332 0/0:22,0:22:60.16:0,60,684 0/0:12,0:12:30.08:0,30,331 0/0:7,0:7:21.05:0,21,226 0/1:5,5:10:99:142,0,117 0/0:13,0:13:39.11:0,39,434 0/0:27,0:27:54.16:0,54,672 0/0:14,0:14:39.11:0,39,445 0/0:11,0:11:33.07:0,33,358 0/0:8,0:8:24.05:0,24,256 0/0:7,0:7:21.06:0,21,237 0/0:10,0:10:30.04:0,30,305 12 6953092 . A C 70.92 . AC=6;AF=0.071;AN=84;BaseQRankSum=-24.797;DP=2556;Dels=0.00;FS=450.929;HRun=2;HaplotypeScore=2.1782;InbreedingCoeff=-0.0987;MQ=58.13;MQ0=0;MQRankSum=3.828;QD=0.29;ReadPosRankSum=-11.706 GT:AD:DP:GQ:PL 0/0:36,12:48:52.97:0,53,1138 0/1:32,17:49:10.82:11,0,751 0/0:31,10:41:63.56:0,64,958 0/0:81,53:134:99:0,117,2533 0/0:62,55:117:15.02:0,15,1894 0/0:61,28:89:87.41:0,87,1855 0/0:49,15:64:99:0,100,1363 0/0:36,19:56:99:0,102,1111 0/0:32,13:46:93.23:0,93,1056 0/1:30,16:46:18.37:18,0,816 0/0:43,18:61:27.26:0,27,1276 0/0:38,11:49:50.90:0,51,1049 0/0:31,10:42:0.74:7,0,853 0/0:29,14:43:12.08:0,12,756 0/0:85,44:129:99:0,172,2466 0/1:20,16:36:14.76:15,0,584 0/0:34,15:49:48.25:0,48,1096 0/0:23,24:48:47.49:0,47,716 0/0:50,19:70:60.21:0,60,1614 0/0:78,34:112:99:0,213,2303 0/0:49,23:74:42.90:0,43,1480 0/0:36,23:59:41.66:0,42,1065 0/0:83,42:125:99:0,139,2537 0/0:38,20:58:24.72:0,25,1106 0/0:49,24:75:62.46:0,62,1455 0/0:31,23:55:15.18:0,15,896 0/1:14,13:27:14.09:14,0,370 0/0:33,10:43:61.72:0,62,1027 0/0:24,19:44:66.51:0,67,703 0/1:36,14:50:73.85:74,0,1068 0/0:29,16:45:8.42:0,8,868 0/0:52,27:79:43.06:0,43,1554 0/0:38,18:56:78.69:0,79,1187 0/0:21,10:32:24.48:0,24,581 0/1:23,14:38:36.31:36,0,661 0/0:39,12:51:99:0,108,1251 0/0:55,12:68:99:0,140,1823 0/0:30,21:52:60.62:0,61,978 0/0:33,14:48:64.68:0,65,1013 0/0:26,20:46:2.14:2,0,738 0/0:29,15:45:55.52:0,56,866 0/0:42,15:57:92.59:0,93,1237 12 6979433 . T A 851.43 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.871;DP=1733;Dels=0.00;FS=2.503;HRun=0;HaplotypeScore=1.2497;InbreedingCoeff=-0.0244;MQ=52.78;MQ0=9;MQRankSum=2.588;QD=13.10;ReadPosRankSum=-2.328 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,129,1583 0/0:28,0:28:84.26:0,84,1027 0/0:30,0:31:84.22:0,84,1011 0/0:74,0:74:99:0,223,2769 0/0:57,0:57:99:0,169,2145 0/0:47,0:47:99:0,135,1739 0/0:35,0:35:99:0,102,1316 0/0:53,0:53:99:0,147,1877 0/1:21,12:33:99:322,0,627 0/0:20,0:20:60.16:0,60,726 0/1:13,19:32:99:592,0,383 0/0:49,0:49:99:0,138,1720 0/0:31,0:32:90.26:0,90,1092 0/0:37,0:37:99:0,105,1325 0/0:122,0:122:99:0,349,4301 0/0:37,0:37:99:0,108,1309 0/0:35,0:35:99:0,105,1282 0/0:42,0:43:99:0,126,1538 0/0:51,0:51:99:0,141,1752 0/0:61,0:62:99:0,171,2087 0/0:37,0:37:96.30:0,96,1193 0/0:42,0:42:99:0,117,1443 0/0:68,0:68:99:0,199,2524 0/0:42,0:42:99:0,123,1566 0/0:43,0:43:99:0,126,1583 0/0:46,0:46:99:0,129,1648 0/0:25,0:25:75.23:0,75,932 0/0:37,0:37:99:0,105,1263 0/0:20,0:20:57.18:0,57,703 0/0:29,0:29:84.26:0,84,1037 0/0:30,0:30:90.28:0,90,1124 0/0:36,0:36:99:0,102,1256 0/0:45,0:45:99:0,129,1606 0/0:36,0:36:99:0,102,1261 0/0:32,0:32:90.28:0,90,1102 0/0:35,0:35:99:0,105,1300 0/0:45,0:45:99:0,126,1568 0/0:35,0:35:99:0,102,1247 0/0:44,0:44:99:0,132,1633 0/0:27,0:28:81.22:0,81,963 0/0:30,0:30:87.22:0,87,1021 0/0:25,0:25:75.23:0,75,926 12 7015013 . T TG 41.36 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.320;DP=2573;FS=407.719;HRun=1;HaplotypeScore=171.3837;InbreedingCoeff=-0.0164;MQ=58.62;MQ0=0;MQRankSum=-1.284;QD=0.45;ReadPosRankSum=-10.322 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,107,1269 0/0:37,0:37:38.38:0,38,842 0/0:34,2:36:12.45:0,12,941 0/0:131,0:131:99:0,294,3845 0/0:91,10:101:99:0,128,2876 0/0:91,0:90:99:0,203,2756 0/0:72,0:71:99:0,126,1942 0/0:58,0:53:99:0,137,1645 0/0:60,0:60:57.45:0,57,1421 0/0:51,1:52:23.48:0,23,1197 0/0:41,0:41:90.74:0,91,1090 0/0:41,0:41:79.47:0,79,1170 0/0:37,0:38:71.52:0,72,1008 0/0:31,1:32:76.91:0,77,932 0/0:159,0:159:94.19:0,94,3535 0/0:51,0:51:19.90:0,20,1180 0/0:43,0:43:35.22:0,35,1083 0/0:47,0:47:42.30:0,42,1224 0/0:81,1:86:4.09:0,4,1642 0/0:104,0:104:99:0,251,2948 0/1:91,0:92:96.57:97,0,1748 0/0:52,0:52:99:0,118,1519 0/0:124,0:123:99:0,245,3580 0/0:71,0:69:99:0,169,1963 0/0:74,0:74:99:0,189,2306 0/0:70,0:68:99:0,171,2117 0/0:34,0:34:79.79:0,80,937 0/0:49,0:49:85.10:0,85,1322 0/0:42,0:42:57.02:0,57,1111 0/0:36,0:36:87.18:0,87,1071 0/0:42,0:42:62.45:0,62,1019 0/0:88,0:88:99:0,194,2573 0/0:52,0:51:97.96:0,98,1246 0/0:42,0:42:89.44:0,89,1077 0/0:49,0:49:94.16:0,94,1319 0/0:42,1:43:55.18:0,55,1020 0/0:66,0:67:57.86:0,58,1535 0/0:52,0:52:76.05:0,76,1353 0/0:40,0:40:99:0,116,1316 0/0:40,0:40:35.79:0,36,949 0/0:47,0:47:24.18:0,24,1216 0/0:38,1:39:69.25:0,69,890 12 7015015 . C G 273.07 . AC=6;AF=0.071;AN=84;BaseQRankSum=-17.100;DP=2523;Dels=0.00;FS=364.660;HRun=1;HaplotypeScore=4.6072;InbreedingCoeff=-0.0964;MQ=58.63;MQ0=0;MQRankSum=-2.336;QD=0.57;ReadPosRankSum=-8.794 GT:AD:DP:GQ:PL 0/0:35,12:47:75.12:0,75,843 0/1:28,10:38:8.83:9,0,648 0/0:28,7:35:46.89:0,47,704 0/0:110,19:129:99:0,217,3147 0/0:92,4:96:99:0,223,2687 0/0:78,11:90:99:0,147,2245 0/0:61,8:70:99:0,139,1641 0/0:55,2:57:99:0,114,1357 0/0:42,15:58:2.14:2,0,959 0/1:35,15:50:48.79:49,0,834 0/0:32,7:39:43.49:0,43,756 0/0:32,7:39:57.51:0,58,895 0/0:30,8:38:27.79:0,28,782 0/0:29,5:34:75.12:0,75,807 0/1:118,40:158:97.59:98,0,2485 0/0:36,14:50:10.54:0,11,873 0/0:36,6:42:27.89:0,28,842 0/0:34,10:44:31.29:0,31,952 0/1:65,16:81:69.77:70,0,1373 0/0:93,11:104:99:0,185,2238 0/1:59,28:87:99:124,0,1190 0/0:47,7:54:77.44:0,77,1131 0/0:99,17:118:99:0,244,2946 0/0:59,9:69:99:0,129,1559 0/0:65,8:73:99:0,156,1937 0/0:65,7:72:99:0,156,1876 0/0:30,5:35:49.44:0,49,767 0/0:38,11:49:33.08:0,33,910 0/0:34,5:39:87.10:0,87,922 0/0:33,2:35:84.21:0,84,984 0/0:31,9:40:19.87:0,20,774 0/0:70,17:87:99:0,117,1869 0/0:38,14:52:68.55:0,69,1040 0/0:34,7:41:72.19:0,72,843 0/0:40,8:48:74.50:0,75,1084 0/0:33,8:42:20.16:0,20,825 0/1:52,15:67:24.46:24,0,1303 0/0:39,12:51:1.32:4,0,902 0/0:38,3:41:58.67:0,59,957 0/0:27,13:40:41.58:0,42,762 0/0:34,12:46:58.87:0,59,1006 0/0:23,14:37:12.73:0,13,522 12 7069342 . C T 532.99 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.030;DP=1588;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=1.7081;InbreedingCoeff=-0.0120;MQ=58.89;MQ0=0;MQRankSum=0.971;QD=11.10;ReadPosRankSum=0.234 GT:AD:DP:GQ:PL 0/0:23,0:23:66.18:0,66,812 0/0:23,0:23:66.21:0,66,846 0/0:20,0:20:51.16:0,51,645 0/0:85,0:86:99:0,223,2911 0/0:83,0:83:99:0,217,2923 0/0:41,0:41:99:0,105,1421 0/0:33,0:33:93.29:0,93,1237 0/0:46,0:46:99:0,129,1698 0/0:24,0:24:66.21:0,66,840 0/0:24,0:24:66.21:0,66,834 0/0:25,0:25:75.22:0,75,924 0/0:24,0:24:69.22:0,69,859 0/0:21,0:21:60.19:0,60,752 0/0:17,0:17:45.14:0,45,568 0/0:88,0:88:99:0,232,2974 0/0:26,0:26:78.25:0,78,977 0/0:26,0:26:69.21:0,69,842 0/0:25,0:25:66.20:0,66,829 0/0:61,1:63:99:0,138,2062 0/0:77,0:77:99:0,211,2641 0/0:50,0:51:99:0,138,1712 0/0:47,0:47:99:0,135,1665 0/0:88,0:88:99:0,214,2895 0/0:34,0:34:93.31:0,93,1262 0/0:38,0:38:99:0,102,1396 0/1:25,23:48:99:579,0,739 0/0:25,0:26:66.21:0,66,846 0/0:23,0:23:69.21:0,69,841 0/0:30,0:30:81.23:0,81,999 0/0:21,0:21:57.18:0,57,727 0/0:17,0:17:48.15:0,48,607 0/0:54,0:54:99:0,147,1828 0/0:42,0:42:99:0,108,1353 0/0:26,0:26:75.23:0,75,937 0/0:29,0:29:81.22:0,81,992 0/0:34,0:34:90.29:0,90,1160 0/0:52,0:52:99:0,144,1756 0/0:35,0:35:99:0,99,1227 0/0:22,0:22:66.18:0,66,796 0/0:25,0:25:72.23:0,72,913 0/0:31,0:31:93.29:0,93,1164 0/0:20,0:20:51.16:0,51,662 12 7080187 . C G 1030.31 . AC=7;AF=0.083;AN=84;BaseQRankSum=-0.458;DP=728;Dels=0.00;FS=2.218;HRun=4;HaplotypeScore=0.2785;InbreedingCoeff=0.2185;MQ=58.93;MQ0=0;MQRankSum=0.281;QD=15.85;ReadPosRankSum=1.146 GT:AD:DP:GQ:PL 0/0:16,0:16:45.13:0,45,552 0/0:9,0:9:24.08:0,24,315 0/0:11,0:11:33.10:0,33,415 0/0:32,0:32:96.31:0,96,1272 0/0:31,0:31:90.30:0,90,1219 0/0:28,0:28:84.26:0,84,1082 0/0:16,0:16:45.13:0,45,590 0/0:15,0:15:45.11:0,45,570 0/0:12,0:12:33.10:0,33,417 0/0:6,0:6:15.05:0,15,189 0/0:14,0:14:42.11:0,42,510 0/0:10,0:10:30.09:0,30,363 0/0:11,0:11:33.10:0,33,412 0/0:11,0:11:33.09:0,33,403 0/0:44,0:44:99:0,123,1549 0/0:19,0:19:51.16:0,51,652 0/0:14,0:14:42.13:0,42,520 0/0:12,0:12:36.11:0,36,455 0/0:26,0:26:75.21:0,75,930 0/0:34,0:34:90.29:0,90,1149 0/0:33,0:33:90.27:0,90,1128 0/0:19,0:19:54.15:0,54,675 0/0:21,0:21:60.19:0,60,789 0/0:11,0:11:27.09:0,27,362 0/0:26,0:26:69.23:0,69,943 0/0:16,0:16:45.15:0,45,605 0/1:3,3:6:96.89:98,0,97 0/1:3,8:11:82.60:250,0,83 0/1:6,2:8:37.94:38,0,203 0/0:17,0:17:48.14:0,48,592 0/0:13,0:13:39.12:0,39,478 0/0:20,0:20:51.14:0,51,646 0/0:19,0:19:54.17:0,54,676 1/1:0,14:14:36.12:463,36,0 0/1:7,5:12:99:154,0,192 0/1:9,5:14:99:149,0,307 0/0:26,0:26:72.21:0,72,914 0/0:13,0:13:39.12:0,39,496 0/0:15,0:15:42.13:0,42,534 0/0:15,0:16:42.13:0,42,526 0/0:12,0:12:30.10:0,30,396 0/0:15,0:15:39.11:0,39,476 12 7080210 . A AG 28201.92 . 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T C 23820.36 . 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G A 12838.76 . 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G T 3393.72 . 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A G 19468.79 . 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C G 599.86 . 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C G 6870.38 . 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C T 7932.35 . 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C T 94.27 . 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C G 106.55 . 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A C 11.65 . 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G A 1201.13 . 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C T 18515.70 . 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C T 12271.16 . 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G A 779.04 . 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A G 25015.22 . 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T C 25034.87 . 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A G 269.27 . 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A G 243.96 . 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G A 38741.49 . 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A T 51054.55 . AC=51;AF=0.607;AN=84;BaseQRankSum=19.870;DP=2831;Dels=0.00;FS=25.188;HRun=0;HaplotypeScore=1.5811;InbreedingCoeff=-0.1480;MQ=59.35;MQ0=0;MQRankSum=-0.752;QD=21.36;ReadPosRankSum=1.098 GT:AD:DP:GQ:PL 0/1:21,22:43:99:681,0,607 1/1:0,59:59:99:2028,163,0 0/1:18,12:31:99:366,0,489 1/1:0,99:99:99:3508,277,0 1/1:1,81:82:99:2892,194,0 0/0:100,0:100:99:0,265,3279 0/1:46,50:96:99:1537,0,1290 0/1:49,37:88:99:1086,0,1446 0/1:35,33:68:99:1021,0,990 0/1:23,24:47:99:744,0,647 0/1:25,22:47:99:658,0,664 0/1:18,30:48:99:811,0,510 0/1:36,19:55:99:472,0,965 0/0:70,0:72:99:0,199,2400 0/1:116,90:208:99:2544,0,2964 0/1:12,24:36:99:750,0,301 0/1:21,24:45:99:711,0,605 1/1:0,44:44:99:1517,120,0 0/1:65,40:105:99:1045,0,1650 0/1:47,36:83:99:1017,0,1356 0/0:88,0:90:99:0,244,2860 0/1:22,21:43:99:658,0,600 1/1:0,101:101:99:3595,280,0 0/1:49,48:97:99:1358,0,1196 0/0:115,0:117:99:0,295,3614 1/1:0,95:95:99:3190,247,0 0/1:17,16:33:99:470,0,485 0/1:23,19:42:99:530,0,699 1/1:0,44:45:99:1557,126,0 1/1:0,58:58:99:2003,160,0 0/1:33,18:51:99:502,0,991 0/1:42,37:79:99:1051,0,1140 1/1:0,29:29:81.25:994,81,0 0/1:25,30:55:99:904,0,728 0/0:61,1:62:99:0,124,1911 1/1:0,64:64:99:2186,172,0 1/1:0,55:55:99:1834,147,0 1/1:0,51:51:99:1806,147,0 1/1:0,56:56:99:1987,159,0 0/1:30,22:52:99:658,0,832 1/1:1,49:50:97.62:1623,98,0 0/1:24,26:50:99:762,0,721 12 8278195 . G A 1323.54 . 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G A 82206.42 . AC=52;AF=0.619;AN=84;BaseQRankSum=-13.200;DP=4519;DS;Dels=0.00;FS=6.473;HRun=0;HaplotypeScore=1.1499;InbreedingCoeff=-0.3125;MQ=59.54;MQ0=0;MQRankSum=0.242;QD=19.96;ReadPosRankSum=1.769 GT:AD:DP:GQ:PL 0/1:47,37:84:99:964,0,1319 1/1:0,85:85:99:2830,241,0 0/1:48,28:76:99:734,0,1363 1/1:0,158:158:99:5289,445,0 1/1:0,140:140:99:4832,403,0 1/1:0,143:143:99:5117,412,0 0/1:81,79:160:99:2231,0,2408 0/1:95,75:171:99:2044,0,2933 1/1:0,79:79:99:2656,229,0 1/1:0,81:81:99:2789,238,0 0/1:44,43:88:99:1152,0,1286 1/1:0,84:84:99:2817,235,0 0/1:40,38:78:99:1020,0,1046 0/1:37,35:72:99:991,0,1017 0/0:193,0:195:99:0,523,6263 0/1:21,26:47:99:745,0,582 0/1:35,44:79:99:1195,0,963 0/1:46,40:86:99:1137,0,1170 0/1:81,77:159:99:2209,0,2313 0/1:116,77:193:99:1949,0,3355 0/0:134,0:135:99:0,358,4412 0/1:56,73:129:99:1972,0,1606 1/1:0,168:168:99:5578,460,0 0/1:80,54:134:99:1469,0,2541 0/1:72,79:151:99:2329,0,2211 1/1:1,138:139:99:4459,331,0 0/1:27,40:67:99:1155,0,727 1/1:1,89:90:99:2905,220,0 0/1:40,28:68:99:749,0,1177 0/1:44,35:79:99:939,0,1247 0/0:71,0:71:99:0,202,2410 0/1:75,73:148:99:1956,0,2214 1/1:0,99:99:99:3281,277,0 0/1:37,24:61:99:630,0,1073 0/1:35,33:68:99:901,0,1033 1/1:0,72:72:99:2432,202,0 0/1:82,78:160:99:2099,0,2201 0/1:49,40:89:99:1093,0,1428 0/1:48,24:72:99:653,0,1366 0/1:50,40:90:99:1093,0,1453 0/1:46,42:88:99:1078,0,1219 1/1:0,83:83:99:2739,226,0 12 9013755 . C T 39187.96 . 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T C 53205.89 . AC=36;AF=0.429;AN=84;BaseQRankSum=-18.942;DP=4374;DS;Dels=0.00;FS=5.264;HRun=0;HaplotypeScore=1.9027;InbreedingCoeff=0.2222;MQ=59.52;MQ0=0;MQRankSum=0.048;QD=20.18;ReadPosRankSum=-0.444 GT:AD:DP:GQ:PL 0/0:80,0:80:99:0,223,2701 0/0:94,2:96:99:0,205,3010 0/1:51,28:79:99:714,0,1439 0/0:176,0:176:99:0,430,5495 0/0:154,0:154:99:0,424,5309 1/1:0,135:136:99:4343,346,0 0/1:54,48:102:99:1409,0,1476 1/1:0,146:146:99:4623,364,0 0/1:36,54:90:99:1453,0,978 0/1:31,50:81:99:1282,0,786 1/1:0,96:96:99:2963,256,0 0/1:31,46:77:99:1223,0,833 0/1:29,49:78:99:1156,0,755 0/1:45,35:80:99:871,0,1237 0/1:119,114:233:99:2757,0,3192 1/1:0,64:64:99:2017,177,0 0/0:82,0:82:99:0,226,2767 0/1:58,33:91:99:798,0,1528 1/1:0,146:146:99:4472,394,0 1/1:0,137:137:99:4104,352,0 0/0:122,0:122:99:0,316,3840 0/0:76,0:76:99:0,193,2398 0/0:161,0:162:99:0,427,5403 0/1:58,45:103:99:1211,0,1617 0/0:131,0:131:99:0,322,4117 1/1:0,100:100:99:3257,262,0 0/1:50,26:76:99:600,0,1379 0/0:87,0:87:99:0,241,2927 1/1:0,74:74:99:2314,199,0 0/0:98,0:98:99:0,268,3297 0/0:96,0:96:99:0,271,3290 0/0:130,1:131:99:0,331,4111 0/0:93,1:94:99:0,223,3034 0/1:49,46:95:99:1153,0,1423 0/0:77,1:78:99:0,168,2451 0/1:45,48:93:99:1221,0,1298 0/1:47,65:113:99:1589,0,1236 1/1:0,84:84:99:2573,223,0 0/1:35,48:83:99:1302,0,952 0/1:42,51:93:99:1301,0,1177 0/0:71,2:73:99:0,133,2283 1/1:3,83:86:99:2502,127,0 12 9161648 . T C 16239.65 . AC=23;AF=0.274;AN=84;BaseQRankSum=-16.781;DP=2180;Dels=0.00;FS=1.889;HRun=0;HaplotypeScore=1.0347;InbreedingCoeff=-0.0178;MQ=59.35;MQ0=0;MQRankSum=1.173;QD=15.86;ReadPosRankSum=-1.818 GT:AD:DP:GQ:PL 0/1:26,16:42:99:388,0,706 0/0:38,0:38:99:0,111,1341 0/0:45,0:45:99:0,117,1409 0/0:84,0:84:99:0,226,2778 0/0:84,0:84:99:0,241,2994 1/1:0,68:68:99:2364,196,0 0/1:34,30:64:99:817,0,1038 1/1:0,55:55:99:1863,153,0 0/0:42,0:42:99:0,120,1455 0/0:26,0:26:75.21:0,75,890 0/0:36,0:36:93.29:0,93,1161 0/0:48,0:48:99:0,135,1634 0/0:34,0:34:99:0,99,1169 0/1:15,17:32:99:479,0,418 0/1:96,72:168:99:1629,0,2679 0/1:9,23:32:99:570,0,209 0/0:31,0:31:90.28:0,90,1112 0/1:14,20:34:99:541,0,378 0/1:20,38:58:99:937,0,525 0/0:79,0:79:99:0,208,2586 0/0:62,0:62:99:0,159,1959 0/0:43,0:43:99:0,120,1460 0/0:94,0:94:99:0,262,3213 0/0:72,0:72:99:0,193,2397 0/0:64,0:64:99:0,175,2165 0/1:26,25:51:99:706,0,757 0/1:14,9:23:99:208,0,402 0/1:19,16:35:99:393,0,530 0/1:27,18:45:99:453,0,811 0/0:34,2:36:54.57:0,55,1122 0/0:48,1:49:99:0,101,1499 0/0:81,0:81:99:0,208,2586 0/0:21,0:21:63.19:0,63,757 0/1:25,16:41:99:382,0,738 0/0:54,0:54:99:0,144,1763 0/1:26,28:54:99:660,0,781 0/1:24,35:59:99:934,0,666 0/1:23,23:46:99:533,0,681 0/1:11,21:32:99:576,0,268 0/1:23,24:47:99:648,0,621 0/0:32,1:33:57.15:0,57,1054 1/1:0,38:38:99:1160,105,0 12 9221373 . T G 116.47 . AC=12;AF=0.143;AN=84;BaseQRankSum=-16.996;DP=914;Dels=0.00;FS=236.728;HRun=2;HaplotypeScore=0.4241;InbreedingCoeff=-0.2243;MQ=59.14;MQ0=0;MQRankSum=-0.150;QD=0.54;ReadPosRankSum=-6.560 GT:AD:DP:GQ:PL 0/0:9,7:17:1.37:0,1,227 0/0:12,6:18:7.45:0,7,377 0/1:8,10:18:34.11:34,0,194 0/0:20,17:37:23.48:0,23,596 0/0:16,15:31:14.60:0,15,509 0/0:6,13:19:15.05:0,15,197 0/0:8,11:19:2.29:0,2,237 0/0:13,17:30:35.60:0,36,425 0/1:12,10:22:7.47:7,0,258 0/1:8,8:16:42.95:43,0,199 0/0:13,13:26:2.25:2,0,385 0/0:16,14:30:15.64:0,16,507 0/1:8,5:13:6.53:7,0,217 0/1:7,7:14:6.53:7,0,222 0/1:29,24:53:29.40:29,0,840 0/0:4,4:8:12.03:0,12,141 0/0:5,10:15:12.03:0,12,150 0/1:6,10:16:38.31:38,0,173 0/0:19,10:29:13.80:0,14,529 0/0:20,15:35:1.61:0,2,531 0/0:24,13:37:63.19:0,63,766 0/0:18,10:28:32.44:0,32,559 0/0:9,17:26:27.08:0,27,330 0/0:12,8:20:30.10:0,30,390 0/0:17,16:33:1.80:3,0,571 0/0:14,12:26:13.43:0,13,428 0/0:6,8:14:17.41:0,17,181 0/0:10,9:19:11.41:0,11,344 0/1:5,7:12:31.33:31,0,124 0/0:10,7:17:10.75:0,11,285 0/0:9,11:20:24.06:0,24,278 0/0:18,8:26:48.12:0,48,554 0/0:15,10:25:15.39:0,15,393 0/1:4,6:10:11.64:12,0,130 0/0:12,7:19:7.55:0,8,386 0/0:11,4:15:2.67:0,3,361 0/0:15,12:27:14.71:0,15,513 0/1:7,8:15:10.49:10,0,193 0/0:8,9:17:2.70:1,0,194 0/1:4,9:13:11.64:12,0,129 0/0:6,10:16:15.04:0,15,171 0/1:7,6:13:10.28:10,0,224 12 9248233 . T C 110535.33 . AC=84;AF=1.000;AN=84;BaseQRankSum=0.496;DP=3262;Dels=0.00;FS=3.083;HRun=0;HaplotypeScore=1.4349;InbreedingCoeff=-0.0000;MQ=53.97;MQ0=0;MQRankSum=-0.456;QD=33.89;ReadPosRankSum=-0.208 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1591,135,0 1/1:0,61:62:99:2057,174,0 1/1:1,61:62:99:2063,144,0 1/1:0,138:138:99:4649,373,0 1/1:0,111:111:99:3945,316,0 1/1:0,110:110:99:3795,304,0 1/1:0,101:102:99:3525,277,0 1/1:0,110:110:99:3814,304,0 1/1:0,56:56:99:1842,153,0 1/1:0,46:46:99:1575,132,0 1/1:0,57:57:99:1918,165,0 1/1:0,60:60:99:1971,162,0 1/1:0,48:48:99:1530,132,0 1/1:0,61:61:99:2105,177,0 1/1:0,185:186:99:6143,517,0 1/1:0,44:44:99:1475,126,0 1/1:0,43:43:99:1489,126,0 1/1:0,66:66:99:2318,199,0 1/1:1,111:112:99:3769,319,0 1/1:0,127:127:99:4021,337,0 1/1:1,118:119:99:3991,306,0 1/1:0,94:94:99:3148,262,0 1/1:0,138:138:99:5087,400,0 1/1:0,119:119:99:4083,325,0 1/1:0,96:96:99:3486,277,0 1/1:0,88:88:99:3099,247,0 1/1:0,38:38:99:1323,114,0 1/1:0,57:57:99:1913,162,0 1/1:0,51:51:99:1790,150,0 1/1:0,54:54:99:1825,159,0 1/1:0,45:45:99:1589,135,0 1/1:0,93:93:99:3054,259,0 1/1:0,67:67:99:2190,184,0 1/1:0,60:60:99:2034,174,0 1/1:0,69:69:99:2253,187,0 1/1:0,48:48:99:1640,144,0 1/1:0,83:84:99:2594,217,0 1/1:0,56:56:99:1891,156,0 1/1:0,59:59:99:1890,165,0 1/1:0,52:52:99:1755,147,0 1/1:0,54:55:99:1818,153,0 1/1:0,71:71:99:2488,211,0 12 9265016 . G C 313.55 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.779;DP=2201;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.0007;InbreedingCoeff=-0.0120;MQ=59.36;MQ0=0;MQRankSum=0.407;QD=8.04;ReadPosRankSum=-0.912 GT:AD:DP:GQ:PL 0/0:35,0:35:96.30:0,96,1202 0/0:51,0:51:99:0,144,1821 0/1:26,13:39:99:360,0,784 0/0:94,0:94:99:0,241,3193 0/0:66,0:66:99:0,178,2382 0/0:71,0:71:99:0,178,2371 0/0:61,0:62:99:0,157,2113 0/0:56,0:56:99:0,150,2010 0/0:32,0:32:90.28:0,90,1135 0/0:34,0:34:90.27:0,90,1118 0/0:29,0:29:84.26:0,84,1043 0/0:39,0:40:99:0,111,1392 0/0:35,0:35:99:0,105,1315 0/0:51,0:51:99:0,135,1691 0/0:123,0:123:99:0,310,3894 0/0:27,0:27:75.21:0,75,918 0/0:30,0:30:84.26:0,84,1057 0/0:40,1:42:99:0,114,1400 0/0:85,1:86:99:0,220,2744 0/0:80,0:80:99:0,214,2730 0/0:76,0:76:99:0,208,2574 0/0:47,0:47:99:0,126,1571 0/0:84,0:84:99:0,226,3021 0/0:72,0:72:99:0,181,2436 0/0:63,0:63:99:0,178,2350 0/0:62,0:62:99:0,147,1992 0/0:31,0:31:87.26:0,87,1075 0/0:33,0:33:99:0,99,1224 0/0:37,0:37:99:0,105,1327 0/0:54,0:55:99:0,138,1777 0/0:31,0:31:90.27:0,90,1137 0/0:72,1:74:99:0,162,2398 0/0:40,0:40:99:0,99,1230 0/0:37,0:37:99:0,102,1271 0/0:41,0:41:99:0,108,1350 0/0:35,0:35:99:0,99,1261 0/0:83,0:83:99:0,229,2783 0/0:43,0:43:99:0,120,1486 0/0:52,0:52:99:0,150,1850 0/0:44,0:44:99:0,126,1580 0/0:43,0:43:99:0,120,1516 0/0:35,0:35:93.28:0,93,1171 12 9311055 . A C 154.51 . AC=2;AF=0.024;AN=84;BaseQRankSum=-38.899;DP=5980;DS;Dels=0.00;FS=514.010;HRun=1;HaplotypeScore=2.5489;InbreedingCoeff=-0.0244;MQ=58.78;MQ0=3;MQRankSum=2.554;QD=0.36;ReadPosRankSum=-23.177 GT:AD:DP:GQ:PL 0/0:94,23:117:99:0,156,2814 0/0:106,36:142:99:0,208,3337 0/0:77,23:100:99:0,164,2423 0/0:168,82:250:99:0,215,4727 0/0:136,59:195:99:0,239,3984 0/0:151,49:200:99:0,344,4581 0/0:136,38:174:99:0,336,4107 0/0:156,38:194:99:0,339,4565 0/0:77,21:100:99:0,125,2373 0/0:80,28:109:99:0,163,2276 0/0:72,20:92:99:0,121,2222 0/0:85,27:112:99:0,148,2518 0/0:65,21:86:99:0,134,1978 0/0:91,33:124:99:0,241,3005 0/1:134,116:250:54.66:55,0,3616 0/0:73,23:96:99:0,179,2279 0/0:106,25:131:99:0,186,3138 0/0:82,20:102:99:0,210,2589 0/0:124,54:178:99:0,148,3682 0/0:164,27:192:99:0,390,5086 0/1:121,57:180:99:162,0,3413 0/0:99,32:132:99:0,248,3164 0/0:155,89:244:99:0,356,4706 0/0:144,34:178:99:0,319,4334 0/0:185,45:230:99:0,359,5338 0/0:153,31:184:99:0,360,4443 0/0:54,15:70:99:0,106,1512 0/0:76,30:106:99:0,99,2249 0/0:67,24:91:99:0,136,2066 0/0:88,3:91:99:0,232,2684 0/0:89,27:116:99:0,204,2867 0/0:164,32:197:99:0,415,5063 0/0:103,18:122:99:0,254,3189 0/0:87,37:125:99:0,100,2593 0/0:94,23:117:99:0,199,2964 0/0:81,29:110:99:0,162,2445 0/0:121,50:171:99:0,197,3569 0/0:93,29:123:99:0,176,2892 0/0:70,33:103:64.59:0,65,2191 0/0:89,38:127:99:0,201,2734 0/0:75,23:98:99:0,121,2252 0/0:95,26:121:99:0,231,2991 12 9311055 . A AC 209.24 . AC=2;AF=0.024;AN=84;BaseQRankSum=14.059;DP=6042;DS;FS=1909.298;HRun=1;HaplotypeScore=445.0667;InbreedingCoeff=-0.0352;MQ=58.70;MQ0=3;MQRankSum=-1.145;QD=0.48;ReadPosRankSum=-35.917 GT:AD:DP:GQ:PL 0/0:121,0:121:99:0,162,3195 0/0:143,0:142:99:0,158,3747 0/0:99,0:99:99:0,134,2657 0/0:250,0:250:96.97:0,97,5553 0/0:198,0:198:99:0,134,4411 0/0:197,0:188:99:0,285,4999 0/0:176,0:173:99:0,270,4503 0/0:195,0:190:99:0,306,4983 0/0:105,0:105:99:0,110,2661 0/0:110,0:110:87.95:0,88,2557 0/0:93,0:92:99:0,100,2373 0/0:113,0:113:89.91:0,90,2704 0/0:84,0:84:99:0,106,2001 0/0:127,0:126:99:0,211,3249 0/1:250,0:250:99:124,0,3439 0/0:94,0:94:99:0,159,2519 0/0:133,0:133:99:0,137,3417 0/0:100,0:101:99:0,184,2678 0/0:185,0:184:96.33:0,96,3923 0/0:193,0:193:99:0,392,5804 0/1:184,0:182:99:155,0,3912 0/0:133,0:133:99:0,199,3556 0/0:246,0:246:99:0,210,4924 0/0:176,0:171:99:0,326,4827 0/0:230,0:222:99:0,417,6390 0/0:185,0:176:99:0,338,4969 0/0:71,0:71:98.42:0,98,1705 0/0:104,0:103:83.51:0,84,2296 0/0:89,0:89:91.52:0,92,2246 0/0:81,25:106:99:0,108,2573 0/0:116,0:116:99:0,166,3054 0/0:199,0:198:99:0,397,5764 0/0:121,0:121:99:0,246,3530 0/0:128,0:128:74.08:0,74,2843 0/0:120,0:120:99:0,183,3186 0/0:115,0:115:99:0,119,2646 0/0:183,0:182:0.69:8,0,3628 0/0:124,0:124:99:0,156,3104 0/0:105,0:105:56.63:0,57,2289 0/0:126,0:126:99:0,157,2819 0/0:99,0:99:61.76:0,62,2342 0/0:115,0:113:99:0,188,3192 12 9315209 . A G 44402.72 . 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C T 3221.92 . 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T C 116831.15 . 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G A 9072.33 . 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T C 2849.79 . 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G A 4173.42 . 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T G 1230.25 . 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A G 55607.84 . 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A G 8175.04 . 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A G 42466.82 . AC=35;AF=0.417;AN=84;BaseQRankSum=26.487;DP=3058;Dels=0.00;FS=49.920;HRun=0;HaplotypeScore=1.3229;InbreedingCoeff=0.1673;MQ=59.45;MQ0=0;MQRankSum=0.046;QD=22.89;ReadPosRankSum=0.161 GT:AD:DP:GQ:PL 0/1:27,23:50:99:660,0,837 1/1:0,53:53:99:1793,141,0 0/1:23,24:47:99:693,0,675 1/1:0,119:119:99:4351,328,0 1/1:0,130:130:99:4863,367,0 0/1:47,39:86:99:1211,0,1429 0/0:84,0:84:99:0,244,3056 0/1:38,33:71:99:1003,0,1169 0/0:52,0:52:99:0,147,1754 0/0:47,0:47:99:0,141,1683 0/0:81,0:81:99:0,235,2807 0/1:29,32:61:99:930,0,856 0/0:50,0:50:99:0,135,1661 0/1:27,23:50:99:672,0,808 0/0:175,1:176:99:0,481,5894 0/0:73,0:73:99:0,214,2536 0/0:69,0:69:99:0,196,2370 0/1:30,29:59:99:860,0,873 0/1:46,38:84:99:1114,0,1351 0/0:103,0:103:99:0,286,3529 0/1:46,38:85:99:1082,0,1329 0/1:38,30:68:99:864,0,1117 1/1:0,115:115:99:4443,331,0 1/1:0,86:86:99:3291,247,0 0/1:51,37:88:99:1153,0,1567 1/1:1,71:72:99:2547,159,0 0/1:26,30:56:99:882,0,738 0/1:32,22:54:99:598,0,969 0/0:56,0:56:99:0,166,1992 0/1:36,26:62:99:776,0,1103 1/1:0,56:56:99:2025,163,0 0/0:77,0:77:99:0,214,2642 0/0:65,0:65:99:0,184,2206 0/0:67,0:67:99:0,196,2367 0/0:75,1:76:99:0,189,2627 0/1:30,18:48:99:507,0,863 0/0:70,0:70:99:0,205,2463 0/0:56,0:56:99:0,159,1911 0/1:49,28:77:99:793,0,1461 1/1:0,63:63:99:2296,187,0 0/1:26,17:43:99:503,0,745 1/1:0,72:72:99:2558,205,0 12 14720554 . G T 147.29 . AC=10;AF=0.238;AN=42;BaseQRankSum=-0.382;DP=35;Dels=0.00;FS=4.183;HRun=0;HaplotypeScore=0.3198;InbreedingCoeff=0.1601;MQ=53.62;MQ0=0;MQRankSum=-0.127;QD=13.39;ReadPosRankSum=-0.637 GT:AD:DP:GQ:PL 0/0:3,0:3:9.02:0,9,99 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:3.01:0,3,33 0/0:1,0:1:3.01:0,3,34 0/0:1,0:1:3:0,3,28 ./. ./. ./. ./. ./. 1/1:0,1:1:3.01:34,3,0 ./. 0/1:1,1:2:22.63:31,0,23 0/1:1,1:2:27.42:30,0,27 1/1:0,2:2:6.02:71,6,0 0/0:1,0:1:3.01:0,3,40 ./. 0/0:1,0:1:3.01:0,3,32 ./. ./. 1/1:1,2:3:3.01:30,3,0 0/0:3,0:3:9.03:0,9,109 ./. ./. 0/0:1,0:1:3.01:0,3,32 ./. 0/0:1,0:1:3.01:0,3,37 ./. ./. 0/0:1,0:1:3.01:0,3,33 ./. 1/1:0,1:1:3.01:37,3,0 0/0:2,0:2:6.02:0,6,72 ./. 0/0:1,1:2:3.01:0,3,39 0/0:1,0:1:3:0,3,27 ./. ./. 0/0:1,0:1:3.01:0,3,38 ./. ./. ./. 12 14720574 . C A 28.55 . AC=4;AF=0.087;AN=46;BaseQRankSum=-2.098;DP=33;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;InbreedingCoeff=0.0568;MQ=52.23;MQ0=0;MQRankSum=1.284;QD=5.71;ReadPosRankSum=-2.474 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:6.02:0,6,73 0/0:1,0:1:3.01:0,3,37 ./. 0/0:1,0:1:3.01:0,3,33 ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,37 ./. 0/0:1,0:1:3.01:0,3,31 0/0:1,0:1:3:0,3,29 0/0:2,0:2:6.02:0,6,76 1/1:0,1:1:3.01:35,3,0 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,37 ./. 0/0:2,0:2:6.02:0,6,75 0/0:3,0:3:9:0,9,87 0/0:2,0:2:6.02:0,6,76 ./. 0/0:1,0:1:3.01:0,3,40 ./. ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,33 ./. 0/0:1,0:1:3.01:0,3,38 0/1:2,1:3:26.25:26,0,50 0/0:2,0:2:6.02:0,6,70 0/0:1,0:1:3.01:0,3,38 ./. 0/0:2,0:2:3.01:0,3,33 ./. 0/1:0,1:1:1.76:33,3,0 ./. ./. ./. 12 14720583 . T C 644.31 . AC=38;AF=1.000;AN=38;DP=27;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;InbreedingCoeff=-0.1816;MQ=51.93;MQ0=0;QD=23.86 GT:AD:DP:GQ:PL 1/1:0,2:2:3.01:32,3,0 1/1:0,1:1:3.01:32,3,0 1/1:0,2:2:6.01:63,6,0 1/1:0,1:1:3.01:34,3,0 ./. 1/1:0,1:1:3.01:33,3,0 ./. ./. ./. ./. 1/1:0,1:1:3.01:31,3,0 ./. 1/1:0,1:1:3.01:30,3,0 ./. 1/1:0,2:2:2.98:22,3,0 ./. 1/1:0,1:1:3.01:32,3,0 1/1:0,2:2:3.01:33,3,0 ./. 1/1:0,2:2:6:55,6,0 1/1:0,2:2:3.01:32,3,0 1/1:0,2:2:6.01:62,6,0 ./. 1/1:0,1:1:3.01:36,3,0 ./. ./. ./. ./. ./. 1/1:0,1:1:3.01:31,3,0 ./. 1/1:0,1:1:3.01:32,3,0 1/1:0,1:1:3.01:32,3,0 1/1:0,1:1:3.01:32,3,0 ./. ./. 1/1:0,2:2:3.01:31,3,0 ./. ./. ./. ./. ./. 12 14982352 . G C 6311.22 . 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T C 75459.05 . 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C G 74224.88 . 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C G 1775.10 . 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T C 1564.80 . 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T C 15181.30 . 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T C 2387.98 . AC=13;AF=0.155;AN=84;BaseQRankSum=8.467;DP=618;Dels=0.00;FS=6.570;HRun=1;HaplotypeScore=0.1387;InbreedingCoeff=-0.1835;MQ=59.24;MQ0=0;MQRankSum=0.628;QD=12.98;ReadPosRankSum=-0.551 GT:AD:DP:GQ:PL 0/0:12,0:12:27.08:0,27,336 0/0:14,0:14:36.08:0,36,438 0/0:9,0:9:24.07:0,24,297 0/1:15,14:29:99:312,0,403 0/1:6,10:16:99:330,0,150 0/0:15,0:15:36.11:0,36,468 0/0:13,0:13:36.12:0,36,462 0/0:9,0:9:21.07:0,21,270 0/0:18,0:18:42.13:0,42,533 0/1:4,4:8:96.80:131,0,97 0/0:9,0:9:27.08:0,27,330 0/0:15,0:15:39.12:0,39,483 0/0:6,0:6:12.04:0,12,163 0/0:7,0:7:21.06:0,21,244 0/0:38,0:38:90.28:0,90,1146 0/0:9,0:9:24.07:0,24,294 0/0:14,0:14:27.09:0,27,372 0/0:8,0:8:21.06:0,21,255 0/0:24,0:24:60.19:0,60,756 0/0:21,0:21:48.15:0,48,629 0/1:5,12:17:99:281,0,117 0/1:4,3:7:66.72:67,0,125 0/1:9,8:17:99:213,0,265 0/0:23,0:23:51.17:0,51,680 0/0:23,0:23:57.18:0,57,733 0/0:16,0:16:45.14:0,45,567 0/1:1,6:7:20.52:172,0,21 0/1:7,7:14:99:228,0,215 0/0:12,0:12:30.09:0,30,374 0/0:19,0:19:45.14:0,45,573 0/0:23,0:23:57.18:0,57,728 0/0:11,0:11:24.08:0,24,319 0/1:12,7:19:99:158,0,308 0/0:13,0:13:39.12:0,39,467 0/1:5,8:13:99:180,0,155 0/0:12,0:12:30.09:0,30,376 0/0:21,0:21:51.15:0,51,638 0/0:11,0:11:30.09:0,30,374 0/0:9,0:9:21.07:0,21,260 0/1:5,3:8:90.06:90,0,156 0/1:10,6:16:99:154,0,291 0/1:6,7:13:99:221,0,179 12 18524216 . G A 430.36 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.366;DP=1903;Dels=0.00;FS=2.033;HRun=0;HaplotypeScore=0.6903;InbreedingCoeff=-0.0120;MQ=59.36;MQ0=0;MQRankSum=0.508;QD=13.45;ReadPosRankSum=0.337 GT:AD:DP:GQ:PL 0/0:25,0:25:69.19:0,69,785 0/0:31,0:31:90.24:0,90,1024 0/1:15,17:32:99:477,0,393 0/0:58,1:59:99:0,162,2002 0/0:68,0:68:99:0,181,2294 0/0:67,0:67:99:0,178,2268 0/0:61,0:61:99:0,163,2060 0/0:40,0:41:99:0,99,1247 0/0:32,0:32:87.23:0,87,1010 0/0:24,0:24:63.16:0,63,734 0/0:39,0:39:99:0,102,1196 0/0:35,0:35:96.26:0,96,1111 0/0:37,0:37:90.26:0,90,1078 0/0:33,0:33:84.22:0,84,980 0/0:103,0:103:99:0,253,2974 0/0:25,0:25:69.20:0,69,797 0/0:30,0:30:84.24:0,84,992 0/0:40,0:40:99:0,102,1174 0/0:48,0:48:99:0,126,1492 0/0:74,0:74:99:0,190,2263 0/0:61,0:61:99:0,165,1928 0/0:37,0:37:99:0,99,1158 0/0:70,0:71:99:0,187,2388 0/0:50,0:50:99:0,135,1746 0/0:64,0:64:99:0,160,2071 0/0:57,0:57:99:0,132,1697 0/0:31,0:31:90.26:0,90,1063 0/0:38,0:38:99:0,108,1244 0/0:34,0:34:87.25:0,87,1051 0/0:43,0:43:99:0,108,1319 0/0:38,0:38:99:0,105,1222 0/0:73,0:73:99:0,165,2042 0/0:41,0:41:99:0,105,1244 0/0:33,0:33:99:0,99,1077 0/0:38,0:38:99:0,102,1204 0/0:47,0:47:99:0,117,1355 0/0:44,0:45:99:0,120,1399 0/0:44,0:44:99:0,126,1448 0/0:30,0:30:75.21:0,75,883 0/0:39,0:39:99:0,105,1216 0/0:39,0:39:99:0,105,1233 0/0:46,0:46:99:0,117,1372 12 18649057 . C T 2189.58 . AC=26;AF=0.310;AN=84;BaseQRankSum=4.508;DP=276;Dels=0.00;FS=4.487;HRun=0;HaplotypeScore=0.0673;InbreedingCoeff=0.0238;MQ=59.58;MQ0=0;MQRankSum=1.046;QD=14.13;ReadPosRankSum=-0.712 GT:AD:DP:GQ:PL 0/0:7,0:7:18.05:0,18,218 0/0:5,0:5:15.04:0,15,161 0/0:3,0:3:9.02:0,9,107 1/1:0,5:5:9.03:128,9,0 1/1:0,8:8:18.06:246,18,0 0/0:5,0:5:15.04:0,15,182 0/1:4,1:5:24.97:25,0,124 0/0:3,0:3:6.02:0,6,80 0/1:8,4:12:87.25:87,0,193 0/1:2,2:4:55.38:62,0,55 0/1:2,5:7:48.42:159,0,48 0/0:8,0:8:24.07:0,24,279 0/0:4,0:4:9.03:0,9,115 0/1:2,5:7:51.82:111,0,52 0/1:10,10:20:99:311,0,230 1/1:0,4:4:12.04:144,12,0 0/0:4,0:4:9.03:0,9,121 0/1:10,2:12:47.70:48,0,239 0/1:3,10:13:77.64:228,0,78 0/0:12,0:12:33.10:0,33,411 0/1:7,1:8:18.07:18,0,180 0/0:6,0:6:18.05:0,18,210 1/1:0,1:1:3.01:39,3,0 0/0:3,0:3:9.03:0,9,112 0/0:5,0:5:12.04:0,12,148 0/0:5,0:5:12.03:0,12,147 0/0:1,0:1:3.01:0,3,39 0/0:8,0:8:24.06:0,24,272 0/0:5,0:5:15.04:0,15,167 0/0:7,0:7:18.05:0,18,217 0/0:6,0:6:18.05:0,18,213 1/1:0,15:15:36.11:465,36,0 0/0:12,0:12:30.08:0,30,363 0/0:4,0:4:12.03:0,12,141 0/1:5,1:6:20.53:21,0,151 0/1:3,3:6:67.51:99,0,68 0/1:3,2:5:56.19:56,0,87 0/0:8,0:8:21.05:0,21,244 0/1:2,2:4:53.87:65,0,54 0/1:5,1:6:19.74:20,0,162 0/1:3,1:4:25.76:26,0,97 0/1:2,1:3:29.55:30,0,63 12 18719887 . C T 772.58 . 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C G 36.45 . 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C T 118828.20 . 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T G 114465.79 . 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G A 106935.76 . 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G A 154124.90 . 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T C 7308.57 . 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C T 2492.20 . 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A G 500.96 . 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A C 4186.22 . 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A G 89367.94 . 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C CA 894.10 . 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A T 656.23 . 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A T 606.43 . 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A G 194981.87 . 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A AGCCCC 2536.29 . 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A G 4360.78 . 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A G 8096.56 . 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C T 607.09 . 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C G 70497.64 . AC=81;AF=0.988;AN=82;BaseQRankSum=-9.229;DP=2356;Dels=0.00;FS=6.023;HRun=0;HaplotypeScore=1.8529;InbreedingCoeff=-0.0123;MQ=59.38;MQ0=0;MQRankSum=2.621;QD=29.92;ReadPosRankSum=-0.767 GT:AD:DP:GQ:PL 1/1:0,17:30:51.14:607,51,0 1/1:0,48:48:99:1536,123,0 1/1:0,31:31:84.23:1001,84,0 1/1:0,92:92:99:3061,238,0 1/1:0,79:81:99:2736,214,0 1/1:0,81:81:99:2881,223,0 1/1:0,65:65:99:2199,166,0 0/1:49,34:83:99:924,0,1559 1/1:0,19:37:54.16:654,54,0 ./.:.:42:.:0,0,0 1/1:0,57:57:99:1769,144,0 1/1:0,50:50:99:1648,138,0 1/1:0,49:49:99:1522,126,0 1/1:0,26:26:72.20:848,72,0 1/1:0,157:157:99:4803,397,0 1/1:0,30:30:87.22:982,87,0 1/1:0,46:47:99:1415,117,0 1/1:0,49:49:99:1668,141,0 1/1:0,69:70:99:2211,187,0 1/1:0,93:93:99:2921,241,0 1/1:1,75:76:99:2355,190,0 1/1:0,42:42:99:1281,108,0 1/1:0,99:101:99:3313,253,0 1/1:0,70:70:99:2451,187,0 1/1:0,73:74:99:2522,193,0 1/1:0,72:73:99:2389,187,0 1/1:0,34:34:90.24:1093,90,0 1/1:0,39:39:99:1324,114,0 1/1:0,30:30:90.24:1012,90,0 1/1:0,21:36:57.16:678,57,0 1/1:0,15:29:36.11:447,36,0 1/1:0,42:78:99:1246,99,0 1/1:0,55:55:99:1739,144,0 1/1:0,44:44:99:1442,126,0 1/1:0,24:25:69.20:825,69,0 1/1:0,52:52:99:1698,144,0 1/1:0,57:57:99:1873,156,0 1/1:0,48:48:99:1599,129,0 1/1:0,38:38:99:1262,105,0 1/1:0,43:44:99:1441,120,0 1/1:0,45:45:99:1482,123,0 1/1:0,47:47:99:1640,132,0 12 25242595 . C G 47405.57 . 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T C 2317.67 . AC=3;AF=0.036;AN=84;BaseQRankSum=12.851;DP=2004;Dels=0.00;FS=1.125;HRun=0;HaplotypeScore=0.4260;InbreedingCoeff=-0.0370;MQ=59.54;MQ0=0;MQRankSum=0.087;QD=15.05;ReadPosRankSum=1.266 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,126,1511 0/0:49,0:49:99:0,132,1572 0/0:49,0:49:99:0,138,1646 0/0:77,1:78:99:0,208,2504 0/0:72,0:72:99:0,196,2395 0/0:76,0:76:99:0,205,2601 0/0:67,0:67:99:0,184,2281 0/0:61,0:61:99:0,162,1991 0/0:45,0:46:99:0,123,1463 0/0:38,0:38:99:0,111,1296 0/0:31,0:31:93.28:0,93,1094 0/0:38,0:38:99:0,108,1269 0/0:51,0:51:99:0,138,1656 0/0:32,0:32:93.28:0,93,1112 0/0:110,0:110:99:0,301,3554 0/0:31,0:31:87.26:0,87,1042 0/0:46,0:46:99:0,126,1510 0/0:46,0:46:99:0,129,1549 0/0:49,0:49:99:0,129,1565 0/0:47,0:47:99:0,129,1566 0/0:53,0:53:99:0,147,1783 0/0:21,0:21:60.17:0,60,706 0/0:93,0:93:99:0,256,3101 0/1:23,31:54:99:1056,0,600 0/0:72,0:72:99:0,193,2347 0/1:29,28:57:99:859,0,808 0/0:30,0:30:90.27:0,90,1065 0/0:39,0:39:99:0,114,1346 0/0:42,0:42:99:0,117,1389 0/0:37,0:37:99:0,105,1236 0/0:40,0:40:99:0,117,1414 0/0:39,0:39:93.29:0,93,1162 0/0:31,0:31:81.25:0,81,978 0/0:30,0:30:90.26:0,90,1052 0/0:30,0:30:72.22:0,72,892 0/0:27,0:27:75.23:0,75,903 0/0:43,0:43:99:0,120,1433 0/0:42,0:42:99:0,114,1370 0/0:37,0:37:99:0,105,1249 0/0:31,0:31:90.27:0,90,1075 0/1:26,17:43:99:478,0,745 0/0:50,0:50:99:0,144,1686 12 26220591 . C T 619.76 . 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T C 25685.12 . AC=11;AF=0.131;AN=84;BaseQRankSum=1.492;DP=7911;DS;Dels=0.00;FS=0.592;HRun=1;HaplotypeScore=2.7945;InbreedingCoeff=0.0585;MQ=59.70;MQ0=1;MQRankSum=1.068;QD=16.31;ReadPosRankSum=0.443 GT:AD:DP:GQ:PL 0/1:83,73:156:99:2149,0,2445 0/1:92,75:168:99:2032,0,2731 0/0:168,0:168:99:0,430,5554 0/0:250,0:250:99:0,686,8905 0/0:250,0:250:99:0,710,9284 0/0:250,0:250:99:0,707,9364 0/0:249,0:250:99:0,686,9010 0/0:250,0:250:99:0,701,9185 0/0:215,0:215:99:0,545,7018 0/0:173,0:173:99:0,457,5778 0/0:137,0:137:99:0,370,4669 0/0:198,0:199:99:0,539,6863 0/0:138,1:139:99:0,337,4652 0/0:157,0:157:99:0,424,5360 0/0:250,0:250:99:0,695,8567 0/0:148,0:149:99:0,400,5089 0/0:193,0:193:99:0,527,6671 0/0:174,0:174:99:0,478,6037 0/0:205,0:205:99:0,548,6967 0/1:112,112:224:99:3239,0,3123 0/0:219,0:220:99:0,572,7348 0/0:129,0:129:99:0,352,4479 0/0:250,0:250:99:0,695,9047 0/0:250,0:250:99:0,686,9084 0/0:250,0:250:99:0,695,9127 0/0:250,0:250:99:0,680,8917 0/1:62,68:130:99:2084,0,1677 0/0:132,1:133:99:0,338,4548 0/1:71,68:140:99:2083,0,1993 0/1:88,65:153:99:1717,0,2478 0/1:61,70:131:99:2131,0,1811 0/0:224,0:224:99:0,572,7394 0/0:142,0:142:99:0,367,4696 0/0:176,0:176:99:0,503,6325 0/0:149,1:150:99:0,383,5254 0/0:215,0:215:99:0,560,7188 0/0:207,0:207:99:0,515,6638 0/0:179,0:179:99:0,469,5976 0/0:152,0:152:99:0,415,5242 1/1:2,165:167:99:5703,410,0 0/1:75,86:161:99:2468,0,2255 0/1:72,73:145:99:2079,0,2078 12 26810777 . T C 23563.20 . AC=27;AF=0.321;AN=84;BaseQRankSum=-15.418;DP=2861;Dels=0.00;FS=0.475;HRun=1;HaplotypeScore=1.0562;InbreedingCoeff=-0.0370;MQ=59.46;MQ0=0;MQRankSum=1.483;QD=16.15;ReadPosRankSum=-0.835 GT:AD:DP:GQ:PL 0/1:15,16:31:99:447,0,446 0/1:27,16:43:99:408,0,848 1/1:1,43:45:91.98:1380,92,0 0/1:58,59:117:99:1658,0,1664 0/1:53,51:104:99:1600,0,1614 0/0:122,0:122:99:0,328,4225 0/0:111,0:111:99:0,310,4008 0/0:103,0:103:99:0,277,3584 0/0:47,0:47:99:0,126,1577 0/0:52,1:53:99:0,112,1783 0/0:49,0:49:99:0,144,1779 0/0:52,0:52:99:0,147,1824 0/0:42,0:42:99:0,117,1476 0/0:56,0:56:99:0,166,2031 0/0:191,0:191:99:0,503,6308 0/0:42,0:42:99:0,120,1480 0/0:40,0:40:99:0,117,1452 0/1:33,26:59:99:691,0,991 1/1:0,89:89:99:2805,247,0 0/1:35,27:63:99:649,0,973 0/0:66,0:66:99:0,184,2263 0/1:20,23:43:99:625,0,582 0/0:143,1:144:99:0,346,4878 0/1:48,45:93:99:1307,0,1512 0/1:72,52:124:99:1437,0,2016 0/1:45,54:99:99:1599,0,1352 0/1:15,20:35:99:543,0,415 0/0:61,0:61:99:0,172,2131 1/1:0,44:44:99:1393,123,0 0/1:21,30:51:99:779,0,568 0/1:24,27:51:99:750,0,733 0/0:51,0:51:99:0,135,1685 1/1:0,43:43:99:1408,120,0 0/1:28,30:58:99:837,0,879 0/1:28,25:53:99:640,0,825 0/1:29,30:59:99:798,0,787 0/1:33,31:64:99:770,0,1014 0/0:60,0:60:99:0,156,1949 0/1:32,24:56:99:659,0,943 0/0:70,0:70:99:0,193,2410 0/0:42,0:42:99:0,117,1439 0/1:21,14:35:99:380,0,620 12 26810816 . T G 19018.83 . AC=22;AF=0.262;AN=84;BaseQRankSum=22.705;DP=2493;Dels=0.00;FS=2.271;HRun=1;HaplotypeScore=0.9585;InbreedingCoeff=0.0147;MQ=59.37;MQ0=0;MQRankSum=-1.645;QD=18.04;ReadPosRankSum=0.044 GT:AD:DP:GQ:PL 0/0:32,0:32:90.28:0,90,1102 0/1:26,16:42:99:486,0,788 1/1:0,40:40:99:1446,114,0 0/1:38,49:87:99:1565,0,1163 0/1:55,43:98:99:1418,0,1672 0/0:101,0:102:99:0,274,3496 0/0:116,0:116:99:0,307,3868 0/0:85,0:85:99:0,247,3079 0/0:40,0:40:99:0,117,1402 0/0:46,0:47:99:0,135,1627 0/0:47,0:47:99:0,132,1605 0/0:48,0:49:99:0,138,1669 0/0:33,0:33:96.30:0,96,1186 0/0:35,0:35:99:0,102,1240 0/0:166,0:166:99:0,454,5566 0/0:36,0:36:99:0,105,1277 0/0:52,0:52:99:0,150,1847 0/1:22,24:46:99:774,0,620 1/1:0,66:66:99:2285,178,0 0/1:29,24:53:99:702,0,847 0/0:52,0:52:99:0,153,1856 0/1:20,20:40:99:630,0,604 0/0:124,0:124:99:0,349,4322 0/1:43,38:81:99:1231,0,1286 0/1:55,39:94:99:1305,0,1626 0/0:84,0:84:99:0,232,2893 0/1:17,15:32:99:463,0,516 0/0:61,0:61:99:0,178,2166 1/1:0,38:38:99:1415,111,0 0/0:49,0:49:99:0,144,1755 0/1:23,25:48:99:809,0,687 0/0:49,0:49:99:0,135,1686 0/0:34,0:34:96.30:0,96,1185 0/1:20,21:41:99:644,0,569 0/1:23,20:43:99:619,0,667 0/1:19,27:46:99:817,0,517 0/1:35,34:69:99:1052,0,1058 0/0:45,0:45:99:0,117,1445 0/1:27,23:50:99:706,0,799 0/0:54,0:54:99:0,150,1841 0/0:46,0:46:99:0,129,1558 0/1:20,20:40:99:652,0,544 12 27135794 . T TA 441.79 . AC=3;AF=0.036;AN=84;BaseQRankSum=-6.657;DP=1232;FS=3.403;HRun=6;HaplotypeScore=66.3253;InbreedingCoeff=0.6539;MQ=59.16;MQ0=0;MQRankSum=1.232;QD=16.99;ReadPosRankSum=0.325 GT:AD:DP:GQ:PL 0/0:33,0:33:66.14:0,66,673 0/0:37,0:37:84.18:0,84,852 0/0:23,0:23:63.12:0,63,636 0/0:15,0:15:36.08:0,36,367 0/0:20,0:20:54.09:0,54,543 0/1:10,3:13:80.17:80,0,209 1/1:1,12:13:36.12:452,36,0 0/0:16,0:16:48.11:0,48,490 0/0:35,0:35:81.13:0,81,800 0/0:23,0:23:63.14:0,63,640 0/0:18,0:18:45.10:0,45,457 0/0:29,0:29:66.12:0,66,658 0/0:21,0:21:48.09:0,48,482 0/0:32,0:32:81.18:0,81,826 0/0:101,0:101:99:0,271,2747 0/0:21,0:21:54.12:0,54,551 0/0:30,0:30:84.17:0,84,850 0/0:28,0:28:69.15:0,69,703 0/0:47,0:47:99:0,111,1130 0/0:46,0:46:99:0,126,1267 0/0:36,0:36:75.16:0,75,765 0/0:39,0:39:99:0,102,1023 0/0:21,0:21:57.13:0,57,582 0/0:17,0:16:42.09:0,42,428 0/0:13,0:13:33.06:0,33,326 0/0:15,0:15:36.08:0,36,367 0/0:22,0:22:66.11:0,66,663 0/0:22,0:22:48.11:0,48,490 0/0:20,0:20:57.13:0,57,581 0/0:33,0:33:66.13:0,66,668 0/0:29,0:29:78.18:0,78,796 0/0:46,0:46:99:0,114,1159 0/0:34,0:34:99:0,99,1006 0/0:32,0:32:81.18:0,81,826 0/0:37,0:37:81.18:0,81,826 0/0:34,0:34:93.18:0,93,936 0/0:39,0:39:99:0,99,1008 0/0:27,0:27:69.14:0,69,696 0/0:23,0:23:63.14:0,63,643 0/0:31,0:31:69.13:0,69,693 0/0:34,0:34:93.21:0,93,949 0/0:27,0:27:69.16:0,69,704 12 27470866 . G A 78031.45 . AC=80;AF=0.952;AN=84;BaseQRankSum=8.143;DP=2434;Dels=0.00;FS=1.612;HRun=0;HaplotypeScore=0.7149;InbreedingCoeff=-0.0500;MQ=59.39;MQ0=0;MQRankSum=0.377;QD=32.06;ReadPosRankSum=2.026 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1201,99,0 1/1:0,37:37:99:1209,99,0 1/1:0,34:34:99:1183,99,0 1/1:0,76:76:99:2601,211,0 1/1:0,80:80:99:2748,217,0 1/1:0,74:74:99:2586,202,0 1/1:0,56:56:99:1912,150,0 1/1:0,77:77:99:2648,214,0 1/1:0,55:55:99:1830,150,0 0/1:26,28:54:99:856,0,718 0/1:34,17:51:99:447,0,932 1/1:0,52:52:99:1684,135,0 1/1:0,34:34:93.29:1153,93,0 0/1:24,17:41:99:431,0,622 1/1:0,176:176:99:5663,457,0 1/1:0,36:36:99:1205,99,0 1/1:1,56:57:99:1907,129,0 1/1:0,42:42:99:1444,117,0 1/1:0,71:71:99:2324,187,0 1/1:0,62:62:99:2086,169,0 1/1:0,76:76:99:2632,214,0 1/1:0,48:48:99:1513,120,0 1/1:0,76:76:99:2678,217,0 1/1:0,80:80:99:2755,217,0 1/1:0,78:78:99:2676,214,0 1/1:0,61:61:99:1989,159,0 1/1:0,34:34:96.30:1172,96,0 1/1:0,56:56:99:1843,150,0 1/1:0,52:52:99:1709,138,0 1/1:0,52:52:99:1783,144,0 1/1:0,50:50:99:1738,141,0 1/1:0,64:64:99:2031,162,0 1/1:0,42:42:99:1392,114,0 1/1:0,49:49:99:1731,141,0 1/1:0,52:52:99:1672,135,0 1/1:0,47:47:99:1619,132,0 1/1:0,49:49:99:1654,135,0 1/1:0,63:64:99:2111,172,0 0/1:21,18:39:99:543,0,589 1/1:0,57:57:99:1988,163,0 1/1:0,55:55:99:1841,150,0 1/1:0,53:53:99:1843,150,0 12 27788021 . G A 49822.33 . AC=33;AF=0.393;AN=84;BaseQRankSum=-16.646;DP=3496;DS;Dels=0.00;FS=5.678;HRun=0;HaplotypeScore=0.7518;InbreedingCoeff=0.2513;MQ=59.48;MQ0=0;MQRankSum=-0.105;QD=22.85;ReadPosRankSum=2.069 GT:AD:DP:GQ:PL 0/1:23,40:63:99:1164,0,642 0/1:32,28:60:99:774,0,883 0/0:53,0:53:99:0,147,1803 1/1:0,135:135:99:4286,355,0 0/1:59,54:113:99:1486,0,1742 0/1:65,45:111:99:1208,0,1955 0/1:42,47:89:99:1260,0,1301 0/0:90,0:90:99:0,232,3055 0/0:72,0:72:99:0,196,2410 0/0:50,1:51:99:0,135,1667 0/0:68,0:68:99:0,187,2304 0/0:65,0:65:99:0,184,2227 0/1:21,28:49:99:774,0,548 0/1:34,35:69:99:962,0,979 1/1:0,234:235:99:7482,626,0 1/1:1,48:50:97.60:1538,98,0 0/1:35,37:72:99:1016,0,991 0/1:25,38:63:99:1113,0,649 1/1:0,123:123:99:3995,328,0 1/1:0,113:115:99:3580,295,0 0/1:61,59:120:99:1530,0,1645 1/1:0,71:71:99:2210,181,0 1/1:0,149:149:99:4887,397,0 0/0:87,1:88:99:0,201,3033 0/1:45,38:83:99:1011,0,1450 0/0:82,0:82:99:0,214,2820 0/1:19,34:53:99:995,0,519 1/1:0,72:72:99:2382,202,0 0/1:25,39:64:99:1157,0,653 0/0:69,1:70:99:0,150,2227 0/0:58,0:58:99:0,156,1967 0/0:125,0:125:99:0,316,3972 0/0:68,0:68:99:0,178,2202 0/1:26,44:70:99:1277,0,666 1/1:1,65:66:99:2248,190,0 0/0:90,0:90:99:0,238,2920 0/0:84,0:84:99:0,223,2680 0/0:46,0:46:99:0,123,1521 0/1:35,50:85:99:1487,0,1005 0/0:66,0:66:99:0,184,2182 0/0:66,0:67:99:0,175,2194 0/0:73,0:73:99:0,211,2553 12 27829369 . T C 2283.20 . AC=2;AF=0.024;AN=84;BaseQRankSum=9.203;DP=3223;Dels=0.00;FS=3.772;HRun=2;HaplotypeScore=1.5430;InbreedingCoeff=-0.0244;MQ=59.38;MQ0=0;MQRankSum=0.183;QD=11.77;ReadPosRankSum=-1.006 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,141,1737 0/0:57,0:57:99:0,153,1903 0/0:50,0:50:99:0,144,1784 0/0:196,0:196:99:0,524,6717 0/0:186,0:186:99:0,515,6648 0/0:130,0:130:99:0,358,4693 0/1:58,40:99:99:1132,0,1739 0/1:55,40:95:99:1214,0,1728 0/0:58,0:58:99:0,166,2073 0/0:43,0:43:99:0,123,1543 0/0:57,0:57:99:0,159,1996 0/0:49,0:49:99:0,132,1668 0/0:53,0:53:99:0,147,1863 0/0:35,0:35:96.30:0,96,1198 0/0:222,0:222:99:0,593,7380 0/0:39,0:39:99:0,111,1386 0/0:65,0:65:99:0,184,2283 0/0:51,0:52:99:0,144,1806 0/0:93,1:94:99:0,247,3076 0/0:85,0:85:99:0,229,2871 0/0:95,0:95:99:0,262,3286 0/0:36,0:36:99:0,99,1253 0/0:163,0:163:99:0,424,5568 0/0:107,0:107:99:0,307,4000 0/0:108,0:108:99:0,301,3881 0/0:111,0:111:99:0,298,3841 0/0:37,0:37:99:0,105,1319 0/0:53,0:53:99:0,138,1737 0/0:42,0:42:99:0,120,1504 0/0:47,0:48:99:0,135,1683 0/0:44,0:44:99:0,123,1517 0/0:106,0:106:99:0,289,3644 0/0:66,0:66:99:0,175,2181 0/0:45,0:45:99:0,132,1636 0/0:54,0:55:99:0,144,1829 0/0:50,0:50:99:0,141,1764 0/0:98,0:98:99:0,265,3271 0/0:55,0:55:99:0,156,1947 0/0:45,0:45:99:0,126,1588 0/0:47,0:47:99:0,132,1659 0/0:41,0:41:99:0,114,1421 0/0:55,0:55:99:0,156,1960 12 27842052 . G A 3680.02 . AC=2;AF=0.024;AN=84;BaseQRankSum=-11.201;DP=3889;DS;Dels=0.00;FS=15.223;HRun=1;HaplotypeScore=1.8273;InbreedingCoeff=-0.0244;MQ=59.46;MQ0=0;MQRankSum=0.176;QD=15.08;ReadPosRankSum=0.921 GT:AD:DP:GQ:PL 0/0:73,0:73:99:0,199,2514 0/0:84,0:84:99:0,244,3073 0/0:79,0:79:99:0,214,2722 0/0:192,0:192:99:0,524,7022 0/0:152,0:152:99:0,424,5747 0/0:152,0:152:99:0,433,5907 0/1:48,63:111:99:1917,0,1524 0/1:70,63:133:99:1763,0,2292 0/0:77,0:77:99:0,208,2657 0/0:68,0:68:99:0,193,2412 0/0:87,0:87:99:0,238,3046 0/0:80,0:80:99:0,232,2891 0/0:60,1:61:99:0,139,2112 0/0:72,0:72:99:0,208,2629 0/0:211,0:212:99:0,578,7343 0/0:44,0:44:99:0,129,1636 0/0:83,0:83:99:0,238,3015 0/0:69,0:69:99:0,196,2505 0/0:84,1:85:99:0,205,3003 0/0:96,0:96:99:0,256,3260 0/0:72,0:72:99:0,211,2663 0/0:50,0:50:99:0,132,1686 0/0:213,0:213:99:0,596,8157 0/0:132,1:133:99:0,340,4941 0/0:156,0:156:99:0,445,5999 0/0:103,0:103:99:0,274,3687 0/0:57,0:57:99:0,160,2022 0/0:73,0:73:99:0,208,2652 0/0:76,0:76:99:0,202,2581 0/0:73,0:73:99:0,199,2523 0/0:62,0:62:99:0,178,2264 0/0:88,0:88:99:0,226,2927 0/0:58,0:58:99:0,169,2110 0/0:74,0:74:99:0,205,2626 0/0:75,0:75:99:0,211,2680 0/0:87,0:89:99:0,244,3085 0/0:75,0:75:99:0,205,2618 0/0:78,0:78:99:0,214,2727 0/0:60,0:60:99:0,175,2189 0/0:76,0:76:99:0,214,2688 0/0:71,0:71:99:0,205,2597 0/0:67,0:67:99:0,196,2454 12 28114897 . CT C 299.81 . AC=14;AF=0.167;AN=84;BaseQRankSum=8.902;DP=698;FS=4.560;HRun=11;HaplotypeScore=40.2191;InbreedingCoeff=-0.2336;MQ=59.37;MQ0=0;MQRankSum=1.268;QD=1.27;ReadPosRankSum=2.275 GT:AD:DP:GQ:PL 0/0:14,0:14:27.07:0,27,288 0/0:8,1:9:2.21:0,2,212 0/0:12,0:12:33.06:0,33,343 0/1:3,3:6:55.90:56,0,78 0/0:14,0:15:20.43:0,20,337 0/0:16,0:18:20.16:0,20,386 0/0:15,1:16:20.46:0,20,417 0/1:6,1:5:6.60:7,0,142 0/0:17,0:17:41.58:0,42,417 0/0:24,0:24:23.27:0,23,408 0/0:14,0:14:27.06:0,27,283 0/1:16,3:19:25.82:26,0,363 0/0:19,0:22:47.68:0,48,451 0/0:9,0:9:2.73:1,0,191 0/0:52,1:53:70.88:0,71,1115 0/0:8,0:8:15.04:0,15,160 0/1:13,2:15:16.21:16,0,255 0/0:13,0:14:2.82:0,0,227 0/1:26,6:32:59.64:60,0,630 0/0:39,1:41:58.66:0,59,849 0/1:15,2:17:16.19:16,0,240 0/0:18,0:18:42.11:0,42,448 0/1:7,4:11:68.52:69,0,158 0/0:8,0:7:20.59:0,21,186 0/0:11,0:10:14.14:0,14,269 0/0:12,0:12:29.94:0,30,303 0/0:9,0:8:18.05:0,18,192 0/0:11,1:12:5.26:0,5,246 0/0:9,0:9:1.57:4,0,167 0/1:8,1:9:6.61:7,0,138 0/1:13,2:15:11.30:11,0,201 0/1:22,5:30:39.53:40,0,598 0/1:18,4:22:45.67:46,0,359 0/1:17,3:21:8.11:8,0,395 0/0:16,0:17:32.24:0,32,373 0/1:13,3:17:25.99:26,0,351 0/1:12,4:16:62.50:62,0,220 0/0:15,0:15:20.46:0,20,394 0/0:14,0:15:35.92:0,36,361 0/0:15,1:16:17.46:0,17,391 0/0:14,0:14:30.08:0,30,319 0/0:16,1:18:26.31:0,26,470 12 28605426 . G A 93066.11 . AC=65;AF=0.774;AN=84;BaseQRankSum=-25.218;DP=4142;DS;Dels=0.00;FS=0.650;HRun=1;HaplotypeScore=1.1563;InbreedingCoeff=-0.0202;MQ=58.59;MQ0=0;MQRankSum=-0.605;QD=24.20;ReadPosRankSum=0.245 GT:AD:DP:GQ:PL 0/1:56,43:99:99:1159,0,1656 0/1:54,42:96:99:1115,0,1588 1/1:0,75:75:99:2630,211,0 0/1:75,67:142:99:1756,0,2303 0/0:188,0:188:99:0,488,6783 1/1:0,114:114:99:3806,292,0 1/1:0,101:101:99:3241,247,0 1/1:0,136:136:99:4492,346,0 1/1:0,68:68:99:2353,190,0 1/1:0,83:83:99:2647,211,0 1/1:0,98:98:99:3328,265,0 1/1:2,82:84:99:2707,186,0 1/1:0,66:66:99:2149,172,0 1/1:0,64:64:99:2175,175,0 0/1:160,90:250:99:2376,0,4557 0/1:31,27:58:99:783,0,873 0/1:55,31:86:99:854,0,1684 0/1:52,38:90:99:964,0,1626 1/1:0,109:110:99:3669,298,0 0/1:63,42:105:99:1207,0,1772 1/1:0,100:100:99:3355,271,0 1/1:1,61:62:99:2057,132,0 1/1:0,144:144:99:4821,376,0 0/1:81,60:141:99:1517,0,2648 1/1:0,134:134:99:4517,349,0 0/1:86,60:146:99:1608,0,2573 0/1:38,20:58:99:520,0,1166 1/1:0,81:81:99:2762,226,0 0/1:39,46:85:99:1290,0,1099 1/1:0,66:66:99:2157,172,0 1/1:0,80:80:99:2796,226,0 1/1:0,92:92:99:3062,241,0 1/1:0,59:59:99:1938,153,0 0/1:45,42:87:99:1180,0,1259 0/0:105,4:109:99:0,175,3519 1/1:0,82:82:99:2820,226,0 1/1:0,114:115:99:3718,295,0 1/1:0,82:83:99:2870,232,0 1/1:0,64:64:99:2247,181,0 0/1:53,45:98:99:1275,0,1532 1/1:1,60:61:99:1945,126,0 0/1:42,40:82:99:1199,0,1243 12 29450006 . AGTCAGATGCC A 4944.76 . 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G A 3128.11 . AC=30;AF=0.357;AN=84;BaseQRankSum=-17.515;DP=5802;DS;Dels=0.01;FS=3200.000;HRun=1;HaplotypeScore=13.1805;InbreedingCoeff=-0.5567;MQ=58.91;MQ0=0;MQRankSum=0.561;QD=0.82;ReadPosRankSum=-31.348 GT:AD:DP:GQ:PL 0/1:82,38:120:23.87:24,0,2487 0/0:87,34:121:81.75:0,82,2637 0/1:56,26:82:99:125,0,1712 0/1:131,44:175:34.86:35,0,4438 0/0:154,49:203:99:0,231,5490 0/0:139,67:207:6.33:0,6,4685 0/0:126,44:171:15.65:0,16,4286 0/0:136,61:197:99:0,126,4606 0/1:71,35:106:99:173,0,2153 0/0:71,28:99:30.96:0,31,2272 0/1:65,25:90:56.74:57,0,2039 0/1:76,35:111:80.97:81,0,2296 0/1:66,25:91:99:133,0,1992 0/1:63,30:93:99:125,0,1906 0/1:145,69:214:99:587,0,4348 0/1:84,35:119:99:203,0,2507 0/0:84,36:120:11.46:0,11,2654 0/1:93,38:131:90.50:90,0,2803 0/1:106,39:145:99:133,0,3088 0/1:116,52:168:49.80:50,0,3289 0/1:121,35:156:99:144,0,3320 0/1:102,45:147:11.57:12,0,2929 0/1:158,71:229:99:124,0,5453 0/0:123,57:180:69.20:0,69,4238 0/0:154,50:204:99:0,314,5621 0/1:132,51:183:12.48:12,0,4464 0/1:67,31:98:79:79,0,2050 0/1:82,35:117:8.79:9,0,2499 0/1:65,32:98:54.80:55,0,2018 0/0:76,33:110:49.71:0,50,2450 0/1:81,29:110:24.37:24,0,2492 0/0:134,68:203:88.51:0,89,4181 0/1:98,46:144:38.77:39,0,3046 0/1:82,40:122:86.61:87,0,2516 0/1:76,34:110:95.78:96,0,2287 0/1:88,37:126:65.42:65,0,2572 0/0:109,3:112:99:0,276,3590 0/1:76,35:111:99:167,0,2250 0/1:75,31:106:58.39:58,0,2352 0/1:69,38:107:99:286,0,2141 0/1:78,36:114:99:151,0,2405 0/1:72,37:110:84.92:85,0,2175 12 29604392 . C G 28494.76 . 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G A 18582.19 . AC=17;AF=0.202;AN=84;BaseQRankSum=-18.625;DP=3621;Dels=0.00;FS=15.604;HRun=1;HaplotypeScore=1.4836;InbreedingCoeff=-0.2537;MQ=59.53;MQ0=0;MQRankSum=-0.796;QD=14.10;ReadPosRankSum=-0.454 GT:AD:DP:GQ:PL 0/1:45,36:81:99:932,0,1378 0/1:42,22:65:99:587,0,1317 0/0:59,0:59:99:0,160,2042 0/0:134,0:134:99:0,349,4723 0/0:136,0:136:99:0,373,5128 0/1:60,48:108:99:1431,0,1874 0/1:65,39:104:99:1223,0,1980 0/1:39,41:80:99:1247,0,1216 0/0:63,0:63:99:0,163,2108 0/0:56,0:56:99:0,153,1969 0/1:36,26:62:99:782,0,1116 0/0:74,0:74:99:0,205,2621 0/0:69,0:69:99:0,190,2405 0/0:89,0:89:99:0,247,3164 0/0:240,0:240:99:0,641,8300 0/0:53,1:54:99:0,117,1885 0/0:78,0:78:99:0,214,2742 0/1:35,27:62:99:815,0,1040 0/0:114,0:114:99:0,292,3784 0/0:141,1:142:99:0,358,4665 0/1:58,69:127:99:2062,0,1538 0/0:76,1:77:99:0,168,2544 0/0:136,0:137:99:0,361,4978 0/0:73,0:73:99:0,199,2704 0/0:85,0:85:99:0,235,3226 0/0:59,0:59:99:0,160,2171 0/1:24,33:57:99:1005,0,691 0/1:41,38:79:99:1138,0,1155 0/0:65,0:65:99:0,184,2379 0/0:80,0:80:99:0,220,2817 0/0:67,0:67:99:0,190,2458 0/1:46,51:97:99:1465,0,1374 0/1:46,47:93:99:1271,0,1452 0/0:80,0:80:99:0,208,2681 0/0:79,0:79:99:0,223,2832 0/1:25,33:58:99:969,0,774 0/0:110,0:110:99:0,301,3804 0/1:28,33:61:99:943,0,886 0/1:30,34:65:99:1034,0,918 0/1:39,33:72:99:958,0,1200 0/1:22,25:47:99:720,0,709 0/0:82,0:82:99:0,223,2887 12 29642573 . A C 9864.79 . AC=37;AF=0.440;AN=84;BaseQRankSum=13.232;DP=700;Dels=0.00;FS=4.137;HRun=4;HaplotypeScore=0.5565;InbreedingCoeff=0.1648;MQ=59.34;MQ0=0;MQRankSum=0.566;QD=22.02;ReadPosRankSum=2.404 GT:AD:DP:GQ:PL 0/0:17,0:17:45.13:0,45,540 0/0:16,1:17:12.58:0,13,547 0/1:9,5:14:99:157,0,247 0/1:13,6:19:99:194,0,330 0/0:23,0:23:63.19:0,63,784 0/0:26,0:26:66.21:0,66,842 0/0:14,1:15:10.57:0,11,457 0/0:16,1:17:42.13:0,42,517 0/1:6,9:15:99:302,0,168 0/1:3,9:12:74.29:280,0,74 0/1:1,7:8:12.05:240,0,12 0/1:8,10:18:99:304,0,213 0/0:8,0:8:21.06:0,21,257 1/1:0,10:10:27.09:345,27,0 0/1:24,29:53:99:835,0,640 0/0:12,0:12:30.09:0,30,359 1/1:1,16:17:7.35:493,7,0 0/1:9,9:18:99:263,0,273 1/1:0,24:24:63.19:792,63,0 1/1:0,29:29:81.24:1018,81,0 1/1:0,13:13:36.10:436,36,0 1/1:0,17:17:51.16:644,51,0 0/1:14,11:25:99:306,0,338 1/1:0,12:12:36.12:489,36,0 1/1:0,14:14:39.13:534,39,0 0/1:5,6:11:99:210,0,136 0/0:8,0:8:24.07:0,24,292 1/1:0,5:5:15.05:186,15,0 0/0:14,0:14:39.10:0,39,456 0/1:6,9:15:99:252,0,174 0/1:8,4:12:99:118,0,227 0/1:12,16:28:99:443,0,319 0/0:25,0:25:72.20:0,72,840 0/1:3,3:6:93.70:97,0,94 1/1:0,12:12:27.09:366,27,0 0/0:16,0:16:42.13:0,42,533 0/1:10,2:12:42.47:42,0,320 0/1:5,9:14:99:266,0,139 0/0:17,0:17:45.12:0,45,537 0/0:16,1:17:45.12:0,45,530 0/0:19,1:20:17.85:0,18,602 0/1:7,8:15:99:252,0,200 12 29648275 . G A 80508.16 . AC=40;AF=0.476;AN=84;BaseQRankSum=5.121;DP=5556;DS;Dels=0.00;FS=12.283;HRun=0;HaplotypeScore=5.6451;InbreedingCoeff=0.0455;MQ=59.53;MQ0=1;MQRankSum=0.704;QD=20.60;ReadPosRankSum=6.716 GT:AD:DP:GQ:PL 0/1:59,37:96:99:1002,0,1711 0/0:121,0:121:99:0,334,4067 0/1:58,42:100:99:1136,0,1647 1/1:0,181:181:99:6491,506,0 0/1:105,83:188:99:2516,0,3233 0/0:218,0:218:99:0,575,7557 0/0:187,1:188:99:0,460,6485 0/0:195,0:195:99:0,539,7034 0/1:49,41:90:99:1214,0,1501 0/1:51,46:97:99:1295,0,1423 0/1:62,39:101:99:1113,0,1692 0/1:51,44:95:99:1231,0,1375 0/0:102,0:102:99:0,274,3354 1/1:0,90:90:99:3123,247,0 0/1:135,69:204:99:1912,0,3869 0/0:72,0:73:99:0,211,2462 1/1:0,89:89:99:3045,241,0 0/1:57,50:107:99:1366,0,1696 1/1:0,170:170:99:5865,460,0 1/1:0,185:185:99:5993,469,0 0/1:108,89:197:99:2577,0,2829 1/1:2,110:112:99:3711,256,0 0/1:110,95:205:99:2890,0,3474 1/1:0,206:206:99:7218,551,0 1/1:3,212:215:99:7245,487,0 0/1:140,85:225:99:2450,0,4150 0/0:82,0:83:99:0,223,2735 0/1:45,40:85:99:1122,0,1304 0/0:98,0:99:99:0,277,3392 0/1:43,48:91:99:1433,0,1150 0/1:49,36:85:99:1087,0,1414 0/0:216,0:216:99:0,521,6536 0/0:117,1:118:99:0,276,3739 0/1:64,36:100:99:950,0,1935 1/1:1,80:81:99:2846,201,0 0/0:131,0:132:99:0,355,4336 1/1:1,135:136:99:4583,364,0 0/1:62,39:102:99:1132,0,1649 0/1:52,49:101:99:1352,0,1461 0/0:103,0:103:99:0,280,3449 0/1:37,41:78:99:1282,0,1075 0/1:52,44:96:99:1326,0,1477 12 29648364 . G A 1343.06 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.472;DP=2271;Dels=0.00;FS=2.397;HRun=2;HaplotypeScore=0.5767;InbreedingCoeff=-0.0120;MQ=59.30;MQ0=0;MQRankSum=-0.351;QD=15.09;ReadPosRankSum=1.767 GT:AD:DP:GQ:PL 0/0:34,0:34:96.30:0,96,1200 0/0:41,0:41:99:0,117,1428 0/0:35,0:35:99:0,105,1290 0/0:85,0:85:99:0,232,3109 0/1:42,47:89:99:1389,0,1409 0/0:84,0:84:99:0,238,3155 0/0:86,0:86:99:0,247,3309 0/0:76,0:76:99:0,214,2822 0/0:33,0:33:93.29:0,93,1157 0/0:36,0:36:96.30:0,96,1215 0/0:39,0:39:99:0,117,1434 0/0:43,0:43:99:0,126,1547 0/0:41,0:41:99:0,120,1474 0/0:31,0:31:87.28:0,87,1094 0/0:116,0:117:99:0,313,3886 0/0:41,0:41:99:0,117,1429 0/0:39,0:39:99:0,102,1292 0/0:44,0:44:99:0,120,1497 0/0:86,0:86:99:0,235,2905 0/0:75,0:75:99:0,217,2684 0/0:80,0:81:99:0,229,2806 0/0:47,0:47:99:0,129,1618 0/0:91,0:91:99:0,259,3471 0/0:67,0:67:99:0,184,2519 0/0:71,0:71:99:0,208,2791 0/0:58,0:58:99:0,166,2204 0/0:47,0:47:99:0,132,1638 0/0:33,0:33:93.29:0,93,1168 0/0:37,0:37:99:0,105,1290 0/0:38,0:38:99:0,105,1306 0/0:36,0:36:99:0,105,1302 0/0:66,0:66:99:0,190,2360 0/0:63,0:63:99:0,175,2156 0/0:41,0:41:99:0,120,1486 0/0:31,0:31:90.28:0,90,1113 0/0:49,0:49:99:0,144,1788 0/0:71,0:72:99:0,199,2475 0/0:41,0:41:99:0,117,1443 0/0:38,0:38:99:0,111,1371 0/0:41,0:41:99:0,120,1467 0/0:29,0:29:84.25:0,84,1025 0/0:39,0:39:99:0,111,1403 12 29665035 . G C 101.14 . AC=3;AF=0.036;AN=84;BaseQRankSum=-8.284;DP=5156;DS;Dels=0.00;FS=273.598;HRun=1;HaplotypeScore=10.5732;InbreedingCoeff=-0.0370;MQ=58.62;MQ0=0;MQRankSum=3.659;QD=0.26;ReadPosRankSum=-11.288 GT:AD:DP:GQ:PL 0/0:89,15:104:99:0,168,2228 0/0:79,7:86:99:0,153,1864 0/0:84,5:89:99:0,171,2004 0/0:182,46:228:99:0,298,3744 0/0:164,42:207:99:0,192,3076 0/0:159,20:180:99:0,228,3054 0/0:167,16:183:99:0,187,2970 0/0:130,15:145:99:0,143,2138 0/0:77,11:89:99:0,153,2039 0/0:77,12:89:99:0,156,1853 0/0:91,9:102:99:0,139,2195 0/0:87,11:98:99:0,180,2099 0/0:67,7:74:99:0,144,1690 0/0:77,6:83:99:0,101,1460 0/0:192,58:250:99:0,161,5226 0/0:59,15:74:73.19:0,73,1469 0/0:88,12:100:99:0,145,1997 0/0:80,13:93:99:0,102,1854 0/1:99,23:122:25.36:25,0,2103 0/0:159,11:170:99:0,280,3279 0/1:95,43:139:99:119,0,2204 0/0:95,13:108:99:0,183,2071 0/0:196,38:234:99:0,257,4001 0/0:141,17:158:99:0,217,2733 0/0:143,17:160:99:0,229,2954 0/0:131,11:143:99:0,241,3044 0/0:56,7:63:99:0,123,1434 0/0:99,13:113:99:0,168,2212 0/0:70,13:83:99:0,146,1700 0/0:69,11:80:66.42:0,66,1585 0/0:72,12:85:92.43:0,92,1693 0/0:182,14:198:99:0,349,4053 0/0:118,13:131:99:0,238,2852 0/0:91,6:97:99:0,127,2135 0/0:91,11:102:99:0,155,2175 0/0:91,13:104:99:0,144,1944 0/1:97,37:135:32.37:32,0,2164 0/0:79,9:89:99:0,159,1967 0/0:87,7:95:99:0,108,1896 0/0:83,13:96:95.69:0,96,1687 0/0:79,10:89:99:0,162,1907 0/0:74,14:88:99:0,146,2029 12 29665037 . A C 6405.62 . 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T C 38791.76 . 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T C 63668.07 . 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T C 11224.71 . 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C T 218.31 . 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C A 9.38 . AC=6;AF=0.100;AN=60;BaseQRankSum=3.155;DP=409;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1155;InbreedingCoeff=-0.0755;MQ=11.04;MQ0=285;MQRankSum=-0.605;QD=0.15;ReadPosRankSum=0.126 GT:AD:DP:GQ:PL 0/0:3,0:4:6:0,6,52 0/0:4,0:4:5.97:0,6,45 ./. 0/0:26,2:30:9.02:0,9,90 0/0:21,0:22:12.01:0,12,118 0/0:10,0:10:9:0,9,79 0/0:9,0:9:5.99:0,6,51 0/0:20,0:20:12.02:0,12,120 0/0:11,0:12:2.99:0,3,24 ./. 0/0:6,0:6:3.01:0,3,31 0/0:10,0:10:2.98:0,3,22 ./. 0/0:6,0:6:2.99:0,3,24 0/0:19,5:24:11.99:0,12,101 0/0:9,0:9:3:0,3,25 0/0:4,0:4:8.99:0,9,75 ./. 1/1:7,3:10:2.99:24,3,0 0/0:8,2:10:6:0,6,55 0/0:15,1:17:9:0,9,83 ./. 0/1:22,4:27:14.68:15,0,51 0/0:13,1:14:11.99:0,12,106 ./. 0/1:8,2:10:17.69:18,0,19 0/0:4,0:4:2.98:0,3,22 ./. ./. 0/0:7,0:7:2.99:0,3,24 0/1:7,4:11:17.70:18,0,18 0/0:17,0:17:2.99:0,3,24 0/0:4,1:6:2.99:0,3,24 0/0:7,0:7:2.99:0,3,24 0/0:6,0:6:2.99:0,3,23 0/0:12,1:13:3:0,3,28 ./. 0/1:5,1:6:17.68:18,0,26 ./. ./. ./. 0/0:4,0:4:5.99:0,6,50 12 31256517 . C T 840.58 . 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G A 2751.44 . 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G GAAA 1007.64 . 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G C 1414.01 . 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C A 1249.50 . AC=23;AF=0.274;AN=84;BaseQRankSum=-8.475;DP=560;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1819;InbreedingCoeff=-0.0512;MQ=53.76;MQ0=20;MQRankSum=-5.900;QD=6.07;ReadPosRankSum=0.005 GT:AD:DP:GQ:PL 0/0:16,0:16:45.14:0,45,566 0/1:1,3:4:24.09:93,0,24 0/1:6,1:7:18.07:18,0,165 0/0:15,0:15:45.14:0,45,574 0/0:20,0:20:60.20:0,60,813 0/1:4,2:6:22.76:23,0,126 0/0:4,1:5:12.04:0,12,166 1/1:0,5:5:12.02:126,12,0 1/1:0,5:5:9.02:93,9,0 0/1:7,4:11:43.34:43,0,218 0/1:7,3:10:43.71:44,0,204 0/0:14,0:14:39.12:0,39,487 0/1:7,2:9:6.64:7,0,172 0/0:13,0:13:36.11:0,36,453 0/0:30,0:31:78.23:0,78,966 0/0:10,0:10:27.09:0,27,338 0/0:13,0:13:36.11:0,36,450 0/0:7,2:9:1.58:4,0,245 1/1:4,9:13:18.04:201,18,0 0/1:17,2:19:17.21:17,0,558 0/1:12,4:16:95.81:96,0,370 0/1:12,6:18:66.54:67,0,353 0/0:24,0:24:66.20:0,66,882 0/1:8,2:10:38.60:39,0,278 0/0:26,0:26:78.25:0,78,1031 0/1:4,2:6:51.82:52,0,108 0/0:11,0:11:30.09:0,30,377 0/0:13,0:13:33.09:0,33,407 0/0:9,0:9:27.09:0,27,351 0/0:13,0:13:33.11:0,33,427 0/0:9,0:9:27.08:0,27,339 0/0:29,0:29:78.24:0,78,993 0/1:6,3:9:67.57:68,0,176 0/1:3,2:5:54.52:55,0,94 0/0:13,0:13:30.10:0,30,393 0/1:10,6:16:99:124,0,338 0/0:29,0:29:81.21:0,81,973 0/1:7,4:12:92.66:93,0,221 0/1:6,7:13:99:144,0,173 0/0:17,0:17:45.13:0,45,568 0/0:15,0:15:45.12:0,45,537 0/1:9,3:12:35.59:36,0,303 12 31282765 . A T 4065.16 . AC=36;AF=0.429;AN=84;BaseQRankSum=-12.325;DP=684;Dels=0.00;FS=210.178;HRun=0;HaplotypeScore=0.2852;InbreedingCoeff=0.0118;MQ=43.40;MQ0=39;MQRankSum=-10.155;QD=9.24;ReadPosRankSum=0.229 GT:AD:DP:GQ:PL 0/0:21,0:21:57.15:0,57,677 0/1:12,6:18:88.62:89,0,344 1/1:0,8:8:21.06:234,21,0 0/0:18,0:18:48.14:0,48,591 0/1:13,3:16:15.02:15,0,378 0/1:7,3:10:67.37:67,0,234 0/0:16,0:16:42.10:0,42,507 0/0:6,1:7:12.03:0,12,154 0/1:7,5:12:99:100,0,225 1/1:0,8:8:21.06:231,21,0 0/0:11,0:11:33.07:0,33,367 0/1:7,5:12:70.22:70,0,223 0/1:10,7:17:99:185,0,268 1/1:0,10:10:21.06:231,21,0 0/1:30,21:51:99:308,0,751 0/1:7,5:12:39.80:40,0,206 0/0:19,0:19:57.15:0,57,654 0/1:7,3:10:72.92:73,0,213 0/1:13,10:23:99:177,0,373 1/1:0,16:16:30.08:332,30,0 0/1:12,7:19:99:143,0,358 0/1:9,8:17:99:158,0,257 0/0:17,0:17:51.12:0,51,588 0/0:14,2:16:8.68:0,9,438 0/1:5,7:12:76.25:76,0,137 0/0:6,0:6:12.04:0,12,165 0/1:13,6:19:99:137,0,349 0/0:19,0:19:54.12:0,54,598 0/1:11,6:17:81.97:82,0,337 0/0:22,0:22:63.17:0,63,742 0/0:19,0:19:48.12:0,48,563 0/1:41,8:49:99:103,0,1136 0/1:10,8:18:99:215,0,262 0/1:6,1:7:12.40:12,0,164 0/0:15,0:15:45.14:0,45,560 1/1:0,8:8:24.07:267,24,0 0/0:38,0:38:99:0,102,1196 0/1:11,8:19:99:122,0,327 0/1:5,4:9:76.24:76,0,154 1/1:0,8:8:15.03:160,15,0 1/1:0,3:3:9.02:100,9,0 1/1:1,11:12:24.06:261,24,0 12 31282784 . A G 7250.08 . AC=36;AF=0.429;AN=84;BaseQRankSum=9.134;DP=847;Dels=0.00;FS=48.787;HRun=0;HaplotypeScore=0.2337;InbreedingCoeff=0.0159;MQ=45.89;MQ0=35;MQRankSum=-10.086;QD=12.76;ReadPosRankSum=-1.957 GT:AD:DP:GQ:PL 0/0:25,0:25:63.19:0,63,789 0/1:15,7:22:99:151,0,474 1/1:0,14:14:33.10:409,33,0 0/0:16,0:16:42.13:0,42,536 0/1:13,2:15:21.01:21,0,363 0/1:10,4:14:99:105,0,326 0/0:21,0:21:57.15:0,57,699 0/0:5,1:6:12.04:0,12,157 0/1:12,12:24:99:315,0,339 1/1:0,15:15:42.09:463,42,0 0/0:13,0:13:33.09:0,33,409 0/1:10,9:19:99:180,0,278 0/1:8,5:13:99:131,0,212 1/1:0,11:11:27.08:309,27,0 0/1:25,29:54:99:548,0,669 0/1:10,6:16:42.11:42,0,287 0/0:23,0:23:60.18:0,60,741 0/1:10,5:15:99:143,0,270 0/1:14,16:30:99:331,0,398 1/1:0,24:24:51.12:604,51,0 0/1:15,14:29:99:387,0,439 0/1:13,15:28:99:309,0,372 0/0:15,0:15:42.11:0,42,508 0/0:17,2:19:5.67:0,6,427 0/1:4,11:15:99:199,0,109 0/0:7,0:7:18.04:0,18,213 0/1:12,4:16:91.63:92,0,315 0/0:32,0:32:90.22:0,90,1024 0/1:9,8:17:99:181,0,242 0/0:23,0:23:60.16:0,60,708 0/0:21,0:21:51.14:0,51,624 0/1:42,12:54:99:197,0,1244 0/1:14,8:22:99:198,0,372 0/1:6,1:7:19.75:20,0,160 0/0:19,0:19:39.13:0,39,531 1/1:0,13:13:36.11:431,36,0 0/0:37,2:39:61.91:0,62,1086 0/1:16,14:30:99:288,0,414 0/1:6,8:14:99:208,0,180 1/1:0,17:17:36.10:432,36,0 1/1:0,8:8:24.07:282,24,0 1/1:0,12:12:24.06:275,24,0 12 31283446 . T G 3477.65 . AC=19;AF=0.226;AN=84;BaseQRankSum=15.799;DP=821;Dels=0.00;FS=6.914;HRun=1;HaplotypeScore=0.3158;InbreedingCoeff=0.2473;MQ=30.11;MQ0=10;MQRankSum=-0.553;QD=13.64;ReadPosRankSum=-1.801 GT:AD:DP:GQ:PL 0/1:7,4:11:88.53:89,0,161 1/1:0,5:5:15.03:160,15,0 0/1:5,7:12:89.07:165,0,89 0/0:27,0:27:66.10:0,66,694 0/0:43,0:43:99:0,114,1127 0/1:14,12:26:99:277,0,263 0/0:32,0:32:90.13:0,90,902 0/1:8,7:15:99:176,0,127 0/1:7,7:14:99:155,0,155 1/1:0,8:8:24.04:244,24,0 0/0:14,0:14:36.05:0,36,357 0/0:16,0:16:39.06:0,39,401 0/0:22,0:22:57.09:0,57,583 0/0:15,0:15:45.04:0,45,415 0/0:44,0:44:99:0,114,1137 0/0:7,0:7:21.02:0,21,194 0/0:16,0:16:39.05:0,39,385 0/0:18,0:18:48.06:0,48,477 0/1:19,9:28:99:172,0,422 1/1:1,21:22:60.09:605,60,0 0/0:25,0:25:69.09:0,69,689 0/0:19,0:19:45.06:0,45,493 0/0:34,0:34:93.13:0,93,933 0/1:24,11:35:99:170,0,576 0/0:61,0:61:99:0,150,1633 1/1:0,27:27:75.11:777,75,0 0/0:6,0:6:18.02:0,18,174 0/0:16,0:16:45.06:0,45,450 0/0:12,0:12:33.03:0,33,304 0/0:13,0:13:30.04:0,30,311 0/0:11,0:11:30.04:0,30,296 0/0:24,0:24:60.09:0,60,614 0/0:13,0:13:33.06:0,33,354 0/1:7,5:12:99:110,0,134 0/0:15,0:15:42.06:0,42,413 0/1:11,5:16:93.26:93,0,257 0/0:21,0:21:54.08:0,54,559 0/0:17,0:17:45.06:0,45,449 0/1:4,6:10:83.62:128,0,84 0/0:9,0:9:24.03:0,24,231 0/0:16,0:16:42.05:0,42,404 0/1:7,7:14:99:157,0,127 12 31288955 . G A 18807.53 . 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G C 113281.94 . 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G A 20517.60 . 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C T 200.10 . 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A G 26577.66 . 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G A 21679.21 . 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G A 36848.15 . 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T C 1460.68 . AC=2;AF=0.024;AN=84;BaseQRankSum=9.914;DP=1352;Dels=0.00;FS=1.542;HRun=0;HaplotypeScore=0.3629;InbreedingCoeff=-0.0244;MQ=59.41;MQ0=0;MQRankSum=0.342;QD=14.05;ReadPosRankSum=2.271 GT:AD:DP:GQ:PL 0/0:31,0:31:90.27:0,90,1082 0/0:29,0:29:78.24:0,78,937 0/0:30,0:30:90.27:0,90,1062 0/1:34,25:59:99:723,0,927 0/1:21,24:45:99:800,0,587 0/0:59,0:60:99:0,156,1992 0/0:48,0:48:99:0,135,1640 0/0:47,0:47:99:0,135,1661 0/0:26,0:26:78.23:0,78,899 0/0:28,0:28:72.22:0,72,875 0/0:22,0:22:63.18:0,63,740 0/0:21,0:21:54.17:0,54,667 0/0:26,0:26:72.20:0,72,849 0/0:25,0:25:72.18:0,72,812 0/0:81,0:81:99:0,196,2383 0/0:23,0:23:69.21:0,69,820 0/0:24,0:24:69.21:0,69,822 0/0:24,0:24:69.21:0,69,826 0/0:31,0:31:93.26:0,93,1085 0/0:33,0:33:90.27:0,90,1097 0/0:29,0:29:75.23:0,75,943 0/0:25,0:25:63.19:0,63,767 0/0:64,0:64:99:0,181,2171 0/0:48,0:48:99:0,135,1652 0/0:54,0:54:99:0,132,1682 0/0:32,0:32:93.28:0,93,1129 0/0:11,0:11:33.10:0,33,391 0/0:19,0:19:57.14:0,57,658 0/0:19,0:19:54.16:0,54,639 0/0:24,0:24:72.21:0,72,850 0/0:26,0:26:75.23:0,75,911 0/0:26,0:27:78.24:0,78,935 0/0:18,0:18:54.16:0,54,629 0/0:27,0:27:78.23:0,78,937 0/0:32,0:32:87.26:0,87,1062 0/0:30,0:30:81.23:0,81,978 0/0:29,0:29:78.22:0,78,941 0/0:31,0:31:87.26:0,87,1034 0/0:23,0:23:69.21:0,69,822 0/0:27,0:27:78.23:0,78,932 0/0:29,0:29:81.25:0,81,988 0/0:15,0:15:42.12:0,42,507 12 40619082 . G A 47254.62 . 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G A 2203.85 . 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G A 1425.16 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.056;DP=2433;Dels=0.00;FS=1.286;HRun=2;HaplotypeScore=0.9562;InbreedingCoeff=-0.0244;MQ=59.49;MQ0=0;MQRankSum=0.562;QD=13.57;ReadPosRankSum=1.302 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,129,1667 0/0:40,0:40:99:0,114,1430 0/0:48,0:49:99:0,135,1704 0/0:78,0:79:99:0,220,2950 0/0:79,0:79:99:0,220,2937 0/0:95,0:95:99:0,259,3495 0/0:77,0:77:99:0,217,2905 0/0:71,0:71:99:0,199,2674 0/0:59,0:59:99:0,163,2078 0/0:54,0:54:99:0,138,1798 0/0:33,0:33:96.30:0,96,1214 0/0:36,0:36:99:0,102,1302 0/0:31,0:31:90.29:0,90,1142 0/0:39,0:39:99:0,114,1455 0/0:149,0:149:99:0,382,4890 0/0:46,0:46:99:0,129,1641 0/0:54,0:54:99:0,150,1905 0/0:50,0:51:99:0,141,1797 0/0:59,0:60:99:0,166,2080 0/0:69,0:69:99:0,196,2514 0/0:75,0:75:99:0,187,2384 0/1:19,26:45:99:746,0,536 0/0:118,0:118:99:0,313,4238 0/0:90,0:90:99:0,241,3208 0/1:36,24:60:99:742,0,1155 0/0:75,0:75:99:0,199,2678 0/0:34,0:34:90.28:0,90,1150 0/0:48,0:48:99:0,132,1682 0/0:49,1:50:99:0,108,1761 0/0:45,0:45:99:0,123,1567 0/0:39,0:39:99:0,108,1362 0/0:72,0:72:99:0,196,2501 0/0:45,0:45:99:0,126,1608 0/0:40,0:40:99:0,120,1521 0/0:37,0:37:99:0,108,1383 0/0:50,0:50:99:0,135,1717 0/0:58,0:58:99:0,159,1988 0/0:50,0:50:99:0,144,1810 0/0:47,0:47:99:0,129,1673 0/0:50,0:50:99:0,144,1812 0/0:41,0:41:99:0,114,1466 0/0:46,0:46:99:0,126,1627 12 40757330 . A G 9568.25 . AC=11;AF=0.131;AN=84;BaseQRankSum=17.167;DP=2848;Dels=0.00;FS=1.339;HRun=2;HaplotypeScore=0.8394;InbreedingCoeff=0.2677;MQ=58.89;MQ0=0;MQRankSum=1.356;QD=18.09;ReadPosRankSum=-1.155 GT:AD:DP:GQ:PL 0/0:77,0:77:99:0,211,2521 0/0:56,0:56:99:0,150,1797 0/1:29,24:53:99:615,0,801 0/0:100,0:100:99:0,274,3307 0/0:113,0:113:99:0,313,3831 0/0:127,0:127:99:0,325,4078 0/0:83,0:83:99:0,223,2779 0/0:105,0:105:99:0,280,3489 0/0:56,0:57:99:0,153,1842 0/0:36,0:36:93.28:0,93,1139 0/1:23,21:44:99:588,0,641 0/0:59,0:59:99:0,165,2004 0/0:45,0:45:99:0,132,1552 0/0:58,0:58:99:0,162,1922 0/0:171,0:171:99:0,436,5330 0/0:35,0:35:99:0,99,1193 0/0:48,0:48:99:0,135,1615 0/0:56,0:56:99:0,159,1915 0/0:71,0:71:99:0,190,2283 0/0:71,0:73:99:0,187,2252 0/0:62,0:62:99:0,166,2043 0/0:44,0:44:99:0,129,1522 0/0:119,0:119:99:0,313,3820 0/1:64,34:98:99:1031,0,1854 0/1:45,37:82:99:1130,0,1279 0/0:110,0:110:99:0,295,3654 0/0:38,0:38:99:0,105,1233 0/0:48,0:48:99:0,135,1616 0/0:49,0:49:99:0,144,1713 1/1:0,54:54:99:1858,147,0 1/1:0,53:53:99:1910,150,0 0/0:65,1:67:99:0,178,2141 0/1:16,29:45:99:818,0,424 0/0:62,0:62:99:0,169,2062 0/0:57,1:58:99:0,121,1867 0/0:69,0:69:99:0,196,2345 0/1:21,34:55:99:990,0,572 0/0:60,0:60:99:0,159,1938 0/1:24,21:45:99:628,0,691 0/0:55,0:55:99:0,156,1859 0/0:46,0:46:99:0,126,1482 0/0:62,0:62:99:0,172,2049 12 40758652 . T C 30111.93 . AC=51;AF=0.607;AN=84;BaseQRankSum=7.218;DP=1498;Dels=0.00;FS=3.180;HRun=0;HaplotypeScore=0.4396;InbreedingCoeff=0.2513;MQ=59.40;MQ0=0;MQRankSum=0.338;QD=25.30;ReadPosRankSum=0.109 GT:AD:DP:GQ:PL 0/1:9,11:20:99:333,0,253 1/1:0,27:27:81.23:955,81,0 1/1:0,38:38:99:1213,99,0 0/1:32,25:57:99:745,0,899 1/1:0,55:55:99:1936,147,0 0/1:29,30:59:99:879,0,875 0/1:25,31:56:99:982,0,716 0/0:55,0:55:99:0,153,1860 0/1:12,7:19:99:196,0,323 1/1:0,21:21:63.18:737,63,0 0/1:17,12:29:99:341,0,447 0/0:37,0:37:96.29:0,96,1171 0/1:11,17:28:99:456,0,316 0/1:9,11:20:99:279,0,274 1/1:0,77:77:99:2550,211,0 1/1:0,25:25:69.21:847,69,0 1/1:0,37:37:96.29:1191,96,0 0/0:26,0:26:72.22:0,72,873 0/0:28,0:28:75.23:0,75,914 0/1:20,13:33:99:343,0,606 1/1:0,42:42:99:1373,117,0 1/1:0,18:18:48.15:594,48,0 0/0:42,0:42:99:0,123,1431 1/1:0,48:48:99:1672,126,0 1/1:0,55:55:99:2077,160,0 1/1:0,54:54:99:1907,147,0 0/1:7,10:17:99:284,0,182 0/0:21,0:21:60.18:0,60,722 0/1:20,18:38:99:438,0,474 1/1:0,24:24:66.20:799,66,0 1/1:0,29:29:78.23:941,78,0 0/1:17,26:43:99:703,0,502 1/1:0,29:29:81.22:967,81,0 0/1:15,14:29:99:361,0,424 0/0:23,0:23:63.19:0,63,775 1/1:0,38:38:99:1303,108,0 1/1:0,31:31:84.25:1014,84,0 0/1:20,19:39:99:445,0,602 1/1:0,25:25:75.20:876,75,0 0/0:42,0:42:99:0,123,1477 0/1:17,13:30:99:379,0,486 0/0:34,0:34:96.29:0,96,1159 12 41303903 . T C 3126.45 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.856;DP=4456;DS;Dels=0.00;FS=7.418;HRun=0;HaplotypeScore=1.0098;InbreedingCoeff=-0.0244;MQ=59.44;MQ0=0;MQRankSum=-0.870;QD=11.67;ReadPosRankSum=0.747 GT:AD:DP:GQ:PL 0/0:94,0:94:99:0,226,2879 0/0:95,0:95:99:0,247,3076 0/0:80,0:80:99:0,208,2593 0/0:156,0:156:99:0,364,4731 0/0:140,0:140:99:0,331,4315 0/0:145,0:145:99:0,373,4845 0/0:112,0:112:99:0,283,3676 0/0:134,0:134:99:0,328,4266 0/0:81,0:81:99:0,217,2667 0/0:83,0:83:99:0,205,2580 0/0:67,0:67:99:0,181,2209 0/0:88,0:88:99:0,241,2986 0/0:78,0:78:99:0,205,2552 0/0:63,0:63:99:0,169,2112 0/0:248,0:248:99:0,629,7843 0/0:58,0:58:99:0,147,1844 0/0:89,0:89:99:0,244,3004 0/0:78,0:78:99:0,202,2508 0/0:128,0:128:99:0,322,4046 0/0:127,0:127:99:0,328,4076 0/1:65,79:144:99:1911,0,1708 0/0:66,1:67:99:0,157,2229 0/0:162,0:162:99:0,376,4900 0/0:132,0:132:99:0,337,4347 0/0:167,0:167:99:0,394,5177 0/0:139,0:139:99:0,352,4519 0/0:59,0:59:99:0,156,1935 0/0:96,0:96:99:0,253,3138 0/0:64,0:64:99:0,175,2131 0/0:93,0:93:99:0,256,3137 0/0:87,0:87:99:0,235,2921 0/1:69,55:124:99:1278,0,1823 0/0:87,0:87:99:0,226,2799 0/0:73,0:73:99:0,199,2464 0/0:105,0:105:99:0,280,3482 0/0:92,0:92:99:0,238,2990 0/0:140,0:140:99:0,358,4481 0/0:111,0:111:99:0,298,3657 0/0:91,0:91:99:0,253,3107 0/0:91,0:91:99:0,244,3033 0/0:76,0:76:99:0,208,2561 0/0:112,0:112:99:0,310,3814 12 41330611 . T C 17189.14 . AC=9;AF=0.107;AN=84;BaseQRankSum=8.924;DP=5526;DS;Dels=0.00;FS=12.370;HRun=0;HaplotypeScore=1.9448;InbreedingCoeff=-0.1200;MQ=59.57;MQ0=0;MQRankSum=1.284;QD=13.87;ReadPosRankSum=2.912 GT:AD:DP:GQ:PL 0/0:104,0:104:99:0,295,3494 0/0:95,0:95:99:0,268,3208 0/0:115,0:115:99:0,337,3998 0/1:82,103:185:99:2886,0,2294 0/1:101,95:196:99:2624,0,2874 0/0:202,0:203:99:0,554,6881 0/1:81,64:145:99:1868,0,2270 0/0:181,0:181:99:0,487,5947 0/0:105,0:105:99:0,301,3526 0/1:48,49:97:99:1327,0,1357 0/0:102,0:103:99:0,289,3434 0/0:113,0:113:99:0,307,3687 0/0:99,0:99:99:0,268,3221 0/0:101,0:101:99:0,292,3461 0/0:239,0:239:99:0,662,7803 0/0:90,0:90:99:0,262,3071 0/0:135,1:136:99:0,351,4529 0/0:113,0:113:99:0,325,3856 0/0:145,1:147:99:0,379,4623 0/0:170,0:170:99:0,439,5414 0/0:150,0:150:99:0,409,4949 0/0:97,0:97:99:0,271,3225 0/1:112,116:228:99:3366,0,3160 0/0:158,1:159:99:0,448,5431 0/0:171,0:171:99:0,472,5782 0/0:142,1:143:99:0,376,4535 0/0:82,0:82:99:0,238,2789 0/0:121,0:121:99:0,334,4025 0/0:109,0:109:99:0,304,3572 0/1:50,54:104:99:1438,0,1461 0/1:49,40:89:99:1123,0,1475 0/0:176,0:178:99:0,463,5634 0/1:46,48:94:99:1269,0,1238 0/0:132,0:132:99:0,385,4599 0/0:104,0:104:99:0,292,3497 0/0:132,0:132:99:0,367,4413 0/0:134,0:135:99:0,376,4481 0/0:111,0:111:99:0,319,3721 0/0:128,0:129:99:0,367,4346 0/0:126,0:126:99:0,367,4334 0/0:93,0:93:99:0,277,3270 0/1:51,48:101:99:1289,0,1519 12 41374862 . A G 4676.80 . AC=3;AF=0.036;AN=84;BaseQRankSum=0.964;DP=4414;DS;Dels=0.00;FS=5.102;HRun=0;HaplotypeScore=1.0642;InbreedingCoeff=-0.0370;MQ=59.49;MQ0=0;MQRankSum=-0.199;QD=12.78;ReadPosRankSum=-0.018 GT:AD:DP:GQ:PL 0/0:82,0:82:99:0,226,2778 0/0:76,0:76:99:0,205,2538 0/0:68,0:68:99:0,196,2369 0/0:213,0:213:99:0,527,6687 0/0:159,0:159:99:0,409,5225 0/0:193,0:193:99:0,491,6370 0/0:172,0:172:99:0,457,5827 0/0:165,0:166:99:0,424,5401 0/0:78,0:78:99:0,223,2714 0/0:72,0:72:99:0,184,2297 0/0:76,0:76:99:0,208,2539 0/0:68,0:68:99:0,184,2245 0/0:66,0:66:99:0,181,2214 0/0:54,0:54:99:0,150,1851 0/1:126,111:237:99:2913,0,3278 0/1:33,25:58:99:699,0,964 0/0:75,1:76:99:0,208,2550 0/0:70,0:70:99:0,196,2411 0/0:131,0:131:99:0,346,4307 0/0:134,0:134:99:0,349,4406 0/0:109,0:109:99:0,298,3667 0/0:58,0:58:99:0,153,1906 0/0:212,0:212:99:0,533,6814 0/0:177,0:177:99:0,439,5698 0/0:163,0:163:99:0,412,5264 0/0:161,0:161:99:0,415,5281 0/0:43,0:43:99:0,123,1484 0/0:79,0:79:99:0,220,2669 0/0:70,0:70:99:0,181,2260 0/0:63,0:63:99:0,178,2174 0/0:63,0:63:99:0,166,2050 0/0:126,0:126:99:0,316,4019 0/0:80,0:80:99:0,214,2639 0/0:82,0:82:99:0,229,2807 0/0:69,0:69:99:0,190,2333 0/0:105,0:105:99:0,274,3406 0/0:103,0:103:99:0,271,3391 0/0:75,0:75:99:0,205,2491 0/0:84,0:84:99:0,229,2823 0/0:99,0:99:99:0,277,3385 0/1:33,38:71:99:1065,0,948 0/0:73,0:73:99:0,199,2471 12 41946539 . G A 30148.01 . AC=22;AF=0.262;AN=84;BaseQRankSum=5.364;DP=3293;DS;Dels=0.00;FS=20.759;HRun=0;HaplotypeScore=1.3419;InbreedingCoeff=0.0147;MQ=59.44;MQ0=0;MQRankSum=1.388;QD=18.51;ReadPosRankSum=0.279 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,147,1797 0/0:77,0:77:99:0,226,2686 0/0:57,0:57:99:0,165,2015 1/1:0,103:103:99:3719,292,0 0/1:46,59:105:99:1896,0,1311 0/1:61,41:102:99:1236,0,1927 0/1:48,32:80:99:881,0,1592 0/1:54,37:91:99:1074,0,1573 0/0:66,0:66:99:0,190,2323 0/0:64,0:64:99:0,175,2184 0/0:49,0:49:99:0,138,1705 0/0:53,0:53:99:0,150,1796 0/0:40,1:41:71.35:0,71,1262 0/0:57,1:58:99:0,122,1811 1/1:0,190:190:99:6401,509,0 0/1:27,32:59:99:879,0,775 0/1:35,31:66:99:939,0,1003 0/0:80,0:80:99:0,229,2781 0/0:109,0:109:99:0,289,3502 0/0:132,0:132:99:0,334,4207 0/0:128,0:128:99:0,340,4261 0/0:64,0:64:99:0,184,2267 0/1:45,64:109:99:1998,0,1275 0/1:40,44:84:99:1248,0,1174 0/1:34,44:78:99:1367,0,1047 0/0:75,2:77:99:0,160,2602 0/0:42,0:43:99:0,117,1446 0/0:71,0:71:99:0,184,2305 0/0:60,0:60:99:0,168,2087 0/1:29,21:50:99:579,0,919 0/1:37,26:63:99:693,0,1111 0/0:109,0:109:99:0,283,3471 0/0:57,0:57:99:0,162,2014 0/0:68,1:69:99:0,159,2338 0/0:59,0:59:99:0,159,1995 0/1:34,30:64:99:871,0,1039 0/1:60,43:103:99:1289,0,1512 0/1:44,34:78:99:1011,0,1278 0/1:27,30:57:99:910,0,732 0/1:43,33:76:99:868,0,1288 1/1:2,69:71:99:2291,128,0 0/0:89,0:89:99:0,241,2985 12 42481609 . G A 19.83 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.814;DP=1097;Dels=0.00;FS=36.864;HRun=0;HaplotypeScore=0.3731;InbreedingCoeff=-0.0462;MQ=58.59;MQ0=0;MQRankSum=-9.369;QD=0.83;ReadPosRankSum=0.979 GT:AD:DP:GQ:PL 0/0:17,0:17:51.16:0,51,647 0/0:37,1:38:75.71:0,76,1295 0/0:22,0:22:66.20:0,66,820 0/0:35,0:35:96.32:0,96,1325 0/0:29,0:29:84.28:0,84,1159 0/0:27,0:27:75.23:0,75,1025 0/0:26,0:26:72.24:0,72,1010 0/0:22,0:22:57.19:0,57,786 0/0:25,3:28:0.72:7,0,803 0/0:19,0:19:54.17:0,54,695 0/0:13,2:15:0.28:12,0,457 0/0:23,0:23:66.21:0,66,848 0/0:22,2:24:11.88:0,12,685 0/0:26,0:26:72.23:0,72,929 0/0:71,3:74:99:0,129,2393 0/0:21,0:21:57.18:0,57,726 0/0:33,1:34:71.58:0,72,1107 0/0:25,1:26:44.82:0,45,933 0/0:21,2:23:6.16:0,6,746 0/0:16,2:18:7.78:0,8,528 0/1:20,4:24:63.76:64,0,630 0/0:24,1:25:44.52:0,45,792 0/0:32,0:32:90.29:0,90,1246 0/0:30,0:30:90.30:0,90,1252 0/0:18,0:18:54.18:0,54,737 0/0:44,0:45:99:0,123,1708 0/0:22,0:22:66.21:0,66,844 0/0:27,0:27:75.24:0,75,952 0/0:19,0:19:57.18:0,57,728 0/0:31,2:33:26.42:0,26,1043 0/0:22,1:23:35.77:0,36,797 0/0:27,2:29:37.88:0,38,930 0/0:16,2:18:2.90:0,0,491 0/0:26,1:27:38.78:0,39,847 0/0:25,0:25:72.23:0,72,930 0/0:25,2:27:26.13:0,26,900 0/0:29,0:29:78.25:0,78,1013 0/0:19,1:20:35.49:0,35,654 0/0:14,1:15:23.45:0,23,507 0/0:13,0:13:39.12:0,39,489 0/0:20,0:20:60.19:0,60,771 0/0:29,0:29:81.26:0,81,1042 12 42481617 . G C 108.45 . AC=3;AF=0.036;AN=84;BaseQRankSum=6.815;DP=1191;Dels=0.00;FS=31.945;HRun=1;HaplotypeScore=0.4085;InbreedingCoeff=-0.0715;MQ=58.25;MQ0=0;MQRankSum=-12.165;QD=1.45;ReadPosRankSum=-0.154 GT:AD:DP:GQ:PL 0/0:15,0:15:45.11:0,45,491 0/0:38,2:40:81.69:0,82,1237 0/0:26,0:26:78.21:0,78,881 0/0:37,0:37:99:0,102,1260 0/0:29,0:29:84.26:0,84,1036 0/0:35,0:35:96.24:0,96,1145 0/0:31,0:31:84.25:0,84,1027 0/0:24,0:24:66.19:0,66,820 0/0:27,4:31:0.53:9,0,823 0/0:20,0:20:57.15:0,57,629 0/1:18,4:22:56.35:56,0,517 0/0:28,0:28:81.21:0,81,896 0/1:21,3:24:17.77:18,0,569 0/0:24,1:25:50.50:0,51,751 0/0:71,3:74:99:0,135,2197 0/0:19,3:22:0.82:7,0,578 0/0:32,1:33:68.58:0,69,1032 0/0:28,3:31:8.52:0,9,886 0/0:21,2:23:6.12:0,6,645 0/0:16,2:18:7.76:0,8,457 0/1:23,6:29:99:105,0,660 0/0:24,1:25:47.50:0,48,751 0/0:40,0:40:99:0,111,1383 0/0:33,0:33:96.29:0,96,1169 0/0:26,1:27:75.20:0,75,911 0/0:45,0:45:99:0,129,1609 0/0:23,1:24:42.54:0,43,719 0/0:22,0:22:60.15:0,60,660 0/0:22,0:22:66.18:0,66,736 0/0:31,3:34:7.71:0,8,925 0/0:23,1:24:35.72:0,36,672 0/0:32,2:34:43.85:0,44,876 0/0:19,1:20:26.42:0,26,496 0/0:27,1:28:32.75:0,33,731 0/0:25,0:25:72.17:0,72,816 0/0:29,3:32:8.51:0,9,885 0/0:35,0:35:99:0,99,1112 0/0:19,1:20:35.45:0,35,574 0/0:15,1:16:23.43:0,23,447 0/0:17,0:17:48.12:0,48,522 0/0:20,2:22:6.93:0,7,608 0/0:29,0:29:81.22:0,81,943 12 42481627 . A G 108.54 . AC=7;AF=0.083;AN=84;BaseQRankSum=-1.278;DP=1288;Dels=0.00;FS=3.837;HRun=0;HaplotypeScore=0.3070;InbreedingCoeff=-0.1161;MQ=57.98;MQ0=0;MQRankSum=-14.195;QD=0.59;ReadPosRankSum=-0.108 GT:AD:DP:GQ:PL 0/0:18,1:19:27.54:0,28,613 0/0:35,2:37:50:0,50,1152 0/0:34,0:34:99:0,102,1215 0/0:40,0:40:99:0,114,1391 0/0:30,0:30:90.28:0,90,1110 0/0:37,0:37:99:0,105,1325 0/0:31,1:32:65.58:0,66,1028 0/0:25,0:25:69.22:0,69,870 0/0:27,4:31:0.54:9,0,863 0/0:19,0:19:51.15:0,51,628 0/1:21,4:25:41.22:41,0,655 0/0:30,0:30:90.28:0,90,1097 0/1:19,3:22:17.76:18,0,576 0/0:27,1:28:56.55:0,57,894 0/0:71,6:77:58.75:0,59,2268 0/1:19,4:23:33.43:33,0,611 0/0:34,1:35:77.58:0,78,1117 0/0:36,3:39:26.59:0,27,1157 0/1:24,3:27:14.46:14,0,734 0/1:18,3:21:12.82:13,0,566 0/1:26,6:32:69.32:69,0,832 0/0:24,1:25:50.51:0,51,793 0/0:41,0:41:99:0,117,1433 0/0:32,0:32:96.29:0,96,1177 0/0:31,2:33:40.05:0,40,1066 0/0:48,1:50:99:0,109,1659 0/0:21,2:23:7.08:0,7,702 0/0:21,1:22:36.57:0,37,720 0/0:27,1:28:54.63:0,55,946 0/1:30,4:34:25.70:26,0,927 0/0:25,1:26:41.80:0,42,853 0/0:28,3:32:11.26:0,11,876 0/0:23,2:25:20.89:0,21,731 0/0:27,2:29:10.10:0,10,777 0/0:28,1:29:47.82:0,48,934 0/0:32,3:35:20.57:0,21,1089 0/0:39,0:39:99:0,108,1325 0/0:21,2:24:15.01:0,15,690 0/0:17,1:18:29.47:0,29,560 0/0:18,0:18:54.16:0,54,646 0/0:27,3:30:2.33:1,0,893 0/0:32,0:32:84.26:0,84,1032 12 42481732 . G A 7592.08 . AC=15;AF=0.179;AN=84;BaseQRankSum=-17.540;DP=1831;Dels=0.00;FS=10.275;HRun=0;HaplotypeScore=0.7370;InbreedingCoeff=-0.0551;MQ=59.31;MQ0=0;MQRankSum=1.656;QD=14.03;ReadPosRankSum=-0.835 GT:AD:DP:GQ:PL 0/0:42,0:43:99:0,105,1333 0/0:43,0:43:99:0,111,1400 0/1:25,23:48:99:640,0,670 0/0:50,0:50:99:0,138,1807 0/0:55,0:55:99:0,153,2043 0/0:53,0:53:99:0,138,1851 0/0:46,0:46:99:0,135,1809 0/0:43,0:43:99:0,123,1674 0/0:33,0:33:87.28:0,87,1102 0/1:24,11:35:99:274,0,700 0/1:17,17:34:99:508,0,440 0/0:41,0:41:99:0,111,1386 0/0:45,0:45:99:0,120,1510 0/0:40,1:41:66.19:0,66,1234 0/0:116,0:117:99:0,295,3721 0/0:29,0:29:81.26:0,81,1013 0/0:36,0:36:99:0,102,1252 0/0:50,0:50:99:0,141,1769 0/1:20,18:38:99:467,0,546 0/1:16,20:36:99:565,0,458 0/1:27,20:47:99:553,0,726 1/1:0,29:29:75.23:913,75,0 0/0:53,0:53:99:0,144,1963 0/0:39,0:39:99:0,105,1410 0/0:33,0:33:96.31:0,96,1273 0/0:62,0:62:99:0,172,2277 0/0:40,0:40:99:0,111,1359 0/1:25,19:44:99:507,0,684 0/0:48,0:48:99:0,126,1591 0/0:35,0:35:87.27:0,87,1082 0/0:32,0:32:90.28:0,90,1122 0/0:66,0:66:99:0,159,2053 0/0:28,0:28:75.23:0,75,944 0/1:9,17:26:99:425,0,264 0/1:16,18:34:99:526,0,473 0/0:53,0:53:99:0,147,1835 0/1:24,18:43:99:505,0,690 0/0:38,0:38:99:0,108,1331 0/1:26,16:42:99:404,0,785 0/1:19,28:47:99:729,0,551 0/0:38,0:38:99:0,108,1339 0/1:17,21:38:99:578,0,469 12 42860045 . A C 71.86 . AC=5;AF=0.060;AN=84;BaseQRankSum=-26.609;DP=2799;Dels=0.00;FS=418.350;HRun=1;HaplotypeScore=6.1705;InbreedingCoeff=-0.0787;MQ=59.40;MQ0=0;MQRankSum=-4.617;QD=0.25;ReadPosRankSum=-9.690 GT:AD:DP:GQ:PL 0/0:44,17:61:71.54:0,72,1426 0/0:47,19:66:54.57:0,55,1410 0/0:34,15:49:44.01:0,44,1079 0/0:58,17:75:99:0,153,1803 0/0:72,10:83:99:0,199,2394 0/0:60,4:64:99:0,159,1948 0/0:56,5:61:99:0,150,1821 0/0:67,7:74:99:0,144,2034 0/1:34,20:54:19.08:19,0,1024 0/0:33,19:52:1.40:4,0,1067 0/1:38,27:65:76.22:76,0,1167 0/0:43,19:62:3.13:0,3,1364 0/0:32,12:44:62.59:0,63,982 0/0:40,20:61:28.72:0,29,1170 0/0:148,29:177:99:0,351,4726 0/0:32,13:45:67.57:0,68,1035 0/1:40,20:60:32.36:32,0,1301 0/0:44,15:59:66.41:0,66,1345 0/0:66,11:77:99:0,162,2240 0/0:108,6:114:99:0,286,3368 0/0:61,11:72:99:0,151,2135 0/0:35,23:58:9.08:0,9,962 0/0:83,12:95:99:0,207,2751 0/0:68,6:74:99:0,180,2111 0/0:54,11:65:99:0,147,1822 0/0:59,2:61:99:0,165,1984 0/1:28,17:45:19.21:19,0,819 0/0:29,19:48:84.02:0,84,987 0/0:40,15:55:59.04:0,59,1247 0/0:43,1:45:99:0,108,1307 0/0:46,14:60:53.68:0,54,1507 0/0:104,10:114:99:0,240,3076 0/0:35,21:56:68.71:0,69,1139 0/0:33,16:49:70.36:0,70,1032 0/0:45,1:46:99:0,123,1476 0/0:44,24:68:62.87:0,63,1362 0/0:61,8:69:99:0,165,1986 0/0:56,18:74:71.86:0,72,1791 0/1:40,19:59:18.67:19,0,1229 0/0:34,21:55:69.76:0,70,1111 0/0:39,19:58:51.66:0,52,1250 0/0:47,23:70:22.90:0,23,1480 12 42860045 . A AC 1429.30 . AC=23;AF=0.274;AN=84;BaseQRankSum=2.599;DP=3055;FS=2656.762;HRun=1;HaplotypeScore=240.8764;InbreedingCoeff=-0.3843;MQ=59.67;MQ0=0;MQRankSum=7.572;QD=0.76;ReadPosRankSum=-31.916 GT:AD:DP:GQ:PL 0/0:63,0:63:23.62:0,24,1453 0/1:68,0:68:45.21:45,0,1472 0/0:48,0:48:21.44:0,21,1071 0/1:58,35:92:99:210,0,1133 0/1:64,33:97:93.08:93,0,1580 0/0:54,15:66:8.75:0,9,1547 0/0:51,23:73:1.66:0,2,1427 0/0:65,22:85:65.42:0,65,1898 0/1:55,0:55:81.05:81,0,992 0/1:54,0:54:18.53:19,0,1036 0/1:64,0:64:99:198,0,1202 0/1:64,0:64:20.98:21,0,1313 0/0:47,0:47:34.24:0,34,1017 0/1:65,0:65:17.52:18,0,1220 0/1:151,53:204:99:125,0,3893 0/0:47,1:48:45.16:0,45,1028 0/1:61,0:61:63.23:63,0,1252 0/0:60,0:60:14.43:0,14,1327 0/1:69,18:87:59.46:59,0,1949 0/1:89,40:129:67.61:68,0,2479 0/1:64,14:78:41.30:41,0,1764 0/1:65,0:65:47.30:47,0,1099 0/1:78,35:113:99:157,0,2066 0/1:64,24:87:30.53:31,0,1581 0/0:58,15:71:16.60:0,17,1484 0/0:52,17:67:63.48:0,63,1692 0/1:48,0:48:52.24:52,0,860 0/0:52,0:52:33.39:0,33,999 0/0:57,0:57:18.53:0,19,1248 0/0:42,14:56:42.39:0,42,1165 0/0:61,0:61:39.66:0,40,1568 0/1:90,32:122:99:145,0,2646 0/0:58,0:58:18.17:0,18,1137 0/1:51,0:51:22.70:23,0,1059 0/0:42,13:55:40.39:0,40,1329 0/0:69,0:68:40.68:0,41,1403 0/1:61,19:80:45.01:45,0,1692 0/0:75,0:74:54.85:0,55,1873 0/1:63,0:63:4.06:4,0,1372 0/0:55,0:55:15.54:0,16,1168 0/1:60,0:60:36.23:36,0,1233 0/1:69,0:69:31.29:31,0,1481 12 43769228 . A C 17873.98 . AC=14;AF=0.167;AN=84;BaseQRankSum=15.291;DP=3025;Dels=0.00;FS=4.559;HRun=1;HaplotypeScore=1.4805;InbreedingCoeff=0.1429;MQ=59.54;MQ0=0;MQRankSum=1.927;QD=18.60;ReadPosRankSum=0.839 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,169,2069 0/0:51,0:51:99:0,144,1771 0/0:51,0:51:99:0,138,1727 0/1:71,72:143:99:2347,0,2038 0/1:47,45:92:99:1431,0,1434 0/1:65,62:127:99:1929,0,1959 1/1:0,109:109:99:4165,322,0 0/1:50,61:111:99:1926,0,1518 0/0:58,0:58:99:0,172,2077 0/0:44,0:44:99:0,126,1532 0/0:50,0:50:99:0,147,1786 0/1:28,19:47:99:506,0,806 0/0:48,0:48:99:0,138,1661 0/1:20,22:42:99:670,0,585 0/0:156,0:156:99:0,418,5169 0/0:42,0:42:99:0,126,1535 0/0:50,0:50:99:0,150,1819 0/0:38,0:38:99:0,111,1354 0/0:83,0:83:99:0,229,2777 0/0:94,0:94:99:0,253,3135 1/1:0,66:66:99:2297,187,0 0/1:32,26:58:99:724,0,961 0/0:142,0:142:99:0,409,5014 0/0:123,0:123:99:0,349,4334 0/0:90,0:90:99:0,265,3257 0/0:93,0:93:99:0,274,3324 0/0:36,0:36:99:0,99,1223 0/0:64,0:64:99:0,172,2125 0/1:20,17:37:99:440,0,557 0/0:46,1:47:99:0,132,1609 0/0:47,0:47:99:0,132,1645 0/1:54,37:91:99:1019,0,1526 0/0:79,0:79:99:0,217,2643 0/0:54,0:54:99:0,153,1884 0/1:22,16:38:99:421,0,639 0/0:56,0:56:99:0,166,2029 0/0:98,0:98:99:0,268,3194 0/0:57,0:57:99:0,153,1909 0/0:54,0:54:99:0,150,1815 0/0:75,0:75:99:0,217,2637 0/0:63,0:63:99:0,190,2292 0/0:61,0:61:99:0,171,2075 12 43769276 . T C 23025.27 . AC=14;AF=0.167;AN=84;BaseQRankSum=26.018;DP=4024;Dels=0.00;FS=0.460;HRun=1;HaplotypeScore=1.3603;InbreedingCoeff=0.1429;MQ=59.51;MQ0=1;MQRankSum=0.435;QD=18.30;ReadPosRankSum=0.974 GT:AD:DP:GQ:PL 0/0:66,0:66:99:0,184,2266 0/0:75,0:75:99:0,205,2517 0/0:57,0:57:99:0,159,1966 0/1:109,90:199:99:2701,0,3029 0/1:77,65:142:99:1998,0,2348 0/1:75,90:165:99:2737,0,2114 1/1:0,132:132:99:4795,358,0 0/1:63,66:129:99:2024,0,1710 0/0:67,0:68:99:0,193,2346 0/0:66,0:66:99:0,178,2155 0/0:79,0:79:99:0,205,2556 0/1:29,23:52:99:578,0,891 0/0:57,0:57:99:0,153,1879 0/1:37,30:67:99:772,0,1018 0/0:206,0:206:99:0,518,6419 0/0:52,0:52:99:0,153,1787 0/0:77,0:77:99:0,214,2592 0/0:60,0:60:99:0,172,2087 0/0:127,0:127:99:0,340,4225 0/0:136,0:136:99:0,349,4363 1/1:0,95:95:99:3324,265,0 0/1:31,42:73:99:1299,0,851 0/0:216,0:216:99:0,572,7220 0/0:142,0:142:99:0,367,4710 0/0:136,0:136:99:0,358,4565 0/0:155,0:155:99:0,406,5132 0/0:55,0:55:99:0,156,1909 0/0:83,0:83:99:0,226,2767 0/1:26,18:44:99:518,0,798 0/0:61,1:62:99:0,134,2060 0/0:51,0:51:99:0,138,1702 0/1:52,45:97:99:1266,0,1620 0/0:110,0:110:99:0,298,3658 0/0:73,0:73:99:0,199,2472 0/1:28,34:63:99:1014,0,782 0/0:70,1:71:99:0,154,2291 0/0:122,0:122:99:0,310,3836 0/0:69,0:69:99:0,196,2382 0/0:75,0:75:99:0,208,2535 0/0:84,0:84:99:0,226,2807 0/0:63,0:63:99:0,169,2055 0/0:73,0:73:99:0,208,2540 12 43821128 . A T 710.34 . 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A C 252.67 . 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A G 32016.34 . 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G T 6514.30 . 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G A 10752.09 . 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ACTTGCC A 182.42 . 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C A 214.06 . AC=7;AF=0.083;AN=84;BaseQRankSum=-18.449;DP=3703;Dels=0.03;FS=1596.523;HRun=1;HaplotypeScore=17.3863;InbreedingCoeff=-0.1034;MQ=59.59;MQ0=0;MQRankSum=-2.842;QD=0.51;ReadPosRankSum=-14.516 GT:AD:DP:GQ:PL 0/1:42,20:63:32.19:32,0,1117 0/0:51,16:67:69.78:0,70,1576 0/0:45,12:57:30.93:0,31,1114 0/0:126,12:138:99:0,284,4365 0/0:107,7:115:99:0,273,3924 0/0:133,50:183:94.33:0,94,3954 0/0:110,34:144:99:0,171,3609 0/0:108,37:145:99:0,137,3366 0/0:57,14:71:67.52:0,68,1598 0/0:36,3:39:93.27:0,93,1137 0/1:41,25:66:72.22:72,0,1014 0/1:41,19:60:13.01:13,0,1030 0/1:37,10:47:23.68:24,0,993 0/0:39,9:48:1.44:0,1,1108 0/0:152,50:202:99:0,102,4572 0/0:47,15:62:93.79:0,94,1362 0/0:43,25:68:44.03:0,44,1304 0/1:44,20:64:32.78:33,0,1278 0/0:70,22:92:27.27:0,27,2260 0/0:93,13:106:99:0,170,2829 0/0:58,21:79:44.36:0,44,1685 0/0:52,14:66:34.27:0,34,1517 0/0:107,44:151:43.78:0,44,3371 0/0:111,40:151:99:0,100,3455 0/0:108,34:142:99:0,135,3592 0/0:93,30:123:99:0,116,2950 0/1:32,9:41:13.31:13,0,976 0/0:56,15:71:99:0,120,1785 0/0:40,8:48:99:0,107,1278 0/0:50,16:66:87.09:0,87,1427 0/0:56,15:71:76.77:0,77,1612 0/0:71,25:96:5.43:0,5,1745 0/0:65,12:77:99:0,109,1984 0/0:42,17:59:12.70:0,13,1226 0/0:51,12:63:99:0,101,1593 0/1:53,26:79:99:137,0,1539 0/0:55,16:71:62.77:0,63,1891 0/0:45,1:47:99:0,114,1442 0/0:47,14:61:4.48:0,4,1301 0/0:50,12:62:56.60:0,57,1555 0/0:32,13:47:19.72:0,20,896 0/0:64,21:85:51.81:0,52,1942 12 46342291 . T C 2069.08 . 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G A 13808.01 . AC=9;AF=0.107;AN=84;BaseQRankSum=-7.316;DP=4938;DS;Dels=0.00;FS=13.705;HRun=3;HaplotypeScore=2.1920;InbreedingCoeff=-0.1200;MQ=59.51;MQ0=0;MQRankSum=0.095;QD=12.98;ReadPosRankSum=1.403 GT:AD:DP:GQ:PL 0/0:121,0:121:99:0,292,3821 0/0:110,0:110:99:0,274,3577 0/0:113,0:113:99:0,280,3655 0/0:108,0:108:99:0,271,3652 0/1:64,61:125:99:1795,0,1648 0/0:105,0:105:99:0,262,3586 0/0:84,0:84:99:0,214,2874 0/0:104,0:104:99:0,277,3754 0/0:124,0:124:99:0,319,4154 0/0:93,0:93:99:0,232,2988 0/0:116,0:116:99:0,280,3642 0/1:63,39:102:99:995,0,1834 0/1:56,45:102:99:1294,0,1568 0/0:79,0:79:99:0,202,2640 0/1:127,119:246:99:3116,0,3640 0/1:41,36:77:99:980,0,1132 0/0:114,0:114:99:0,280,3653 0/0:98,0:98:99:0,256,3284 0/0:172,0:172:99:0,424,5486 0/0:226,0:226:99:0,536,7034 0/0:199,0:199:99:0,500,6412 0/0:117,0:117:99:0,283,3710 0/0:106,0:106:99:0,268,3663 0/1:43,47:90:99:1334,0,1417 0/1:75,57:132:99:1492,0,2110 0/0:85,0:85:99:0,223,2969 0/0:69,0:69:99:0,160,2112 0/0:119,0:119:99:0,307,3982 0/0:93,0:93:99:0,244,3164 0/0:88,0:88:99:0,229,2938 0/0:76,0:76:99:0,205,2604 0/0:163,0:163:99:0,409,5294 0/0:128,1:129:99:0,291,4151 0/0:108,0:108:99:0,277,3590 0/0:97,0:97:99:0,256,3302 0/0:126,0:126:99:0,328,4284 0/0:175,0:176:99:0,433,5652 0/0:136,0:136:99:0,349,4525 0/0:115,0:115:99:0,313,3994 0/1:49,61:110:99:1678,0,1348 0/1:40,39:80:99:1125,0,1187 0/0:104,0:105:99:0,271,3517 12 47170764 . G A 4805.76 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.774;DP=4040;DS;Dels=0.00;FS=15.833;HRun=0;HaplotypeScore=1.8176;InbreedingCoeff=0.6543;MQ=59.46;MQ0=0;MQRankSum=0.517;QD=23.22;ReadPosRankSum=0.016 GT:AD:DP:GQ:PL 0/0:90,0:90:99:0,253,3086 0/0:82,0:82:99:0,226,2764 0/0:75,0:75:99:0,196,2406 0/0:136,0:136:99:0,373,4890 0/0:119,0:119:99:0,325,4328 0/1:54,59:113:99:1711,0,1668 1/1:0,94:94:99:3095,250,0 0/0:99,0:99:99:0,265,3528 0/0:83,0:83:99:0,226,2793 0/0:69,1:70:99:0,157,2245 0/0:89,0:89:99:0,253,3039 0/0:82,0:82:99:0,205,2567 0/0:81,0:81:99:0,214,2617 0/0:67,0:67:99:0,190,2279 0/0:237,1:239:99:0,594,7486 0/0:59,0:59:99:0,162,1982 0/0:80,0:80:99:0,211,2569 0/0:72,0:72:99:0,193,2352 0/0:132,0:132:99:0,346,4159 0/0:116,0:116:99:0,313,3852 0/0:150,0:152:99:0,397,4912 0/0:84,0:84:99:0,214,2604 0/0:156,1:157:99:0,380,5436 0/0:77,0:77:99:0,211,2773 0/0:111,0:111:99:0,310,4157 0/0:105,0:105:99:0,289,3830 0/0:46,0:46:99:0,135,1600 0/0:90,0:90:99:0,244,2947 0/0:65,0:65:99:0,184,2231 0/0:77,0:77:99:0,223,2700 0/0:71,0:71:99:0,199,2419 0/0:158,0:158:99:0,400,4955 0/0:94,0:94:99:0,265,3206 0/0:68,0:68:99:0,181,2218 0/0:77,0:77:99:0,208,2560 0/0:82,0:82:99:0,235,2860 0/0:143,0:143:99:0,364,4489 0/0:83,0:83:99:0,229,2821 0/0:73,0:73:99:0,205,2473 0/0:79,1:80:99:0,188,2556 0/0:87,0:87:99:0,241,2919 0/0:82,0:82:99:0,214,2596 12 47761212 . G A 21175.97 . AC=35;AF=0.417;AN=84;BaseQRankSum=-21.737;DP=1827;Dels=0.00;FS=37.685;HRun=1;HaplotypeScore=0.4430;InbreedingCoeff=0.1673;MQ=59.45;MQ0=0;MQRankSum=0.019;QD=19.96;ReadPosRankSum=-2.152 GT:AD:DP:GQ:PL 0/1:19,8:27:99:208,0,568 1/1:0,31:31:78.24:975,78,0 0/1:15,23:38:99:677,0,380 0/0:54,0:54:99:0,141,1939 0/0:52,0:52:99:0,135,1864 0/0:52,0:52:99:0,132,1816 0/0:41,0:41:99:0,108,1483 0/1:22,30:52:99:856,0,547 0/1:16,23:39:99:667,0,451 0/1:22,10:32:99:244,0,682 1/1:1,38:39:70.54:1249,71,0 0/0:36,0:36:99:0,105,1313 0/0:53,1:54:93.28:0,93,1606 0/0:36,0:36:99:0,102,1293 1/1:0,117:117:99:3674,295,0 1/1:0,33:33:90.27:1086,90,0 1/1:0,31:31:87.27:1079,87,0 0/1:22,12:34:99:336,0,628 0/1:26,36:63:99:961,0,752 0/0:81,0:81:99:0,211,2706 0/0:65,0:65:99:0,169,2123 0/1:22,18:40:99:493,0,670 0/0:53,0:53:99:0,135,1875 0/0:57,0:57:99:0,144,2018 0/0:38,0:38:93.31:0,93,1314 0/0:37,0:37:99:0,99,1343 0/1:10,10:20:99:254,0,331 0/1:22,14:36:99:354,0,691 0/1:21,12:33:99:335,0,632 1/1:0,36:36:96.30:1196,96,0 0/1:20,19:39:99:503,0,613 0/1:27,13:40:99:258,0,803 1/1:0,50:50:99:1600,126,0 0/0:25,0:25:72.23:0,72,918 0/1:21,10:31:99:257,0,612 0/1:23,26:49:99:712,0,649 0/0:51,0:51:99:0,126,1613 0/1:25,25:50:99:610,0,756 0/0:34,0:34:90.29:0,90,1159 1/1:0,36:36:93.28:1156,93,0 1/1:0,27:27:78.24:967,78,0 0/1:19,18:37:99:470,0,566 12 48062824 . T A 3169.13 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.474;DP=6109;DS;Dels=0.00;FS=1.085;HRun=1;HaplotypeScore=1.8724;InbreedingCoeff=-0.0244;MQ=59.67;MQ0=0;MQRankSum=0.331;QD=14.41;ReadPosRankSum=-0.559 GT:AD:DP:GQ:PL 0/0:95,0:95:99:0,259,3131 0/0:106,0:106:99:0,280,3414 0/0:102,0:102:99:0,277,3401 0/0:249,0:250:99:0,665,8178 0/0:250,0:250:99:0,662,8299 0/0:250,0:250:99:0,635,8237 0/0:228,0:228:99:0,584,7469 0/0:248,1:250:99:0,621,8162 0/0:108,0:109:99:0,298,3596 0/0:108,0:108:99:0,298,3603 0/0:103,0:103:99:0,289,3483 0/1:52,47:99:99:1314,0,1513 0/0:89,0:89:99:0,241,2947 0/1:52,69:121:99:1917,0,1455 0/0:250,0:250:99:0,686,8212 0/0:70,0:70:99:0,190,2293 0/0:101,0:101:99:0,271,3317 0/0:127,0:127:99:0,340,4148 0/0:176,0:176:99:0,460,5670 0/0:183,0:183:99:0,454,5670 0/0:167,0:167:99:0,409,5119 0/0:127,0:127:99:0,316,3945 0/0:250,0:250:99:0,647,8059 0/0:224,0:224:99:0,599,7505 0/0:250,0:250:99:0,641,8170 0/0:249,0:249:99:0,629,7958 0/0:81,0:81:99:0,214,2592 0/0:115,0:115:99:0,328,3922 0/0:97,0:98:99:0,271,3265 0/0:87,0:88:99:0,235,2863 0/0:110,0:110:99:0,286,3550 0/0:168,0:169:99:0,424,5340 0/0:99,0:99:99:0,265,3234 0/0:111,0:111:99:0,286,3585 0/0:98,0:98:99:0,277,3365 0/0:121,0:121:99:0,337,4095 0/0:139,0:139:99:0,352,4383 0/0:107,0:107:99:0,292,3567 0/0:104,0:104:99:0,286,3482 0/0:112,0:113:99:0,307,3751 0/0:106,0:106:99:0,280,3436 0/0:115,1:116:99:0,328,3990 12 48082972 . T C 201.13 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.362;DP=475;Dels=0.00;FS=4.337;HRun=1;HaplotypeScore=0.0419;InbreedingCoeff=-0.0167;MQ=59.43;MQ0=0;MQRankSum=-0.218;QD=11.83;ReadPosRankSum=-1.060 GT:AD:DP:GQ:PL 0/0:11,0:11:33.10:0,33,407 0/0:12,0:12:33.10:0,33,398 0/0:13,0:13:36.11:0,36,453 0/0:7,0:7:15.05:0,15,199 0/0:5,0:5:15.05:0,15,191 0/0:10,0:10:27.09:0,27,347 0/0:7,0:7:21.07:0,21,267 0/0:8,0:8:24.08:0,24,299 0/0:5,0:5:15.05:0,15,183 0/0:12,0:12:27.09:0,27,344 0/0:11,0:11:27.09:0,27,347 0/0:18,0:18:51.16:0,51,634 0/0:11,0:11:33.10:0,33,404 0/0:9,0:9:27.08:0,27,330 0/0:42,0:42:99:0,102,1286 0/0:3,0:3:9.03:0,9,112 0/0:14,0:14:39.12:0,39,490 0/0:8,0:8:21.06:0,21,256 0/0:7,0:7:18.06:0,18,227 0/0:15,0:15:42.11:0,42,497 0/0:12,0:12:30.09:0,30,375 0/0:6,0:6:12.04:0,12,163 0/0:11,0:11:30.09:0,30,366 0/0:7,0:7:21.07:0,21,266 0/0:8,0:8:24.07:0,24,293 0/0:7,0:7:21.07:0,21,258 0/0:7,0:7:21.06:0,21,254 0/0:7,0:7:21.07:0,21,258 0/0:14,0:14:42.11:0,42,496 0/0:15,0:15:42.13:0,42,524 0/0:10,0:10:30.09:0,30,369 0/0:16,1:17:39.12:0,39,502 0/0:12,0:12:36.11:0,36,435 0/0:14,0:14:36.11:0,36,458 0/0:8,0:8:24.07:0,24,288 0/0:16,0:16:36.12:0,36,475 0/0:14,0:14:36.11:0,36,456 0/0:6,0:6:15.04:0,15,178 0/1:9,8:17:99:247,0,283 0/0:12,0:12:30.10:0,30,385 0/0:18,0:18:48.15:0,48,600 0/0:9,0:9:27.09:0,27,336 12 48151691 . C G 133.10 . AC=2;AF=0.025;AN=80;BaseQRankSum=-0.234;DP=238;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.2294;InbreedingCoeff=-0.0583;MQ=58.45;MQ0=0;MQRankSum=0.000;QD=8.87;ReadPosRankSum=0.307 GT:AD:DP:GQ:PL 0/0:4,0:4:12.03:0,12,135 0/0:4,0:4:9.03:0,9,109 0/0:3,0:3:6.02:0,6,70 0/0:7,0:7:18.05:0,18,224 0/0:6,0:6:15.05:0,15,189 0/0:3,0:3:6.02:0,6,78 0/0:8,0:8:21.07:0,21,282 ./. 0/0:3,0:3:9.03:0,9,109 0/0:6,0:6:18.06:0,18,234 0/0:8,0:8:18.06:0,18,236 0/0:3,0:3:9.03:0,9,109 0/0:4,0:4:9.03:0,9,120 0/0:5,0:5:15.05:0,15,195 0/0:30,0:30:78.25:0,78,988 0/0:7,0:7:18.05:0,18,212 0/0:7,0:7:15.04:0,15,181 0/0:5,0:5:15.04:0,15,175 0/1:4,4:8:50.71:93,0,51 0/1:3,4:7:85.51:101,0,86 0/0:9,0:9:21.07:0,21,265 0/0:6,0:6:15.05:0,15,193 0/0:8,0:8:15.05:0,15,202 0/0:3,0:3:9.02:0,9,95 0/0:6,0:6:15.05:0,15,211 ./. 0/0:3,0:3:9.03:0,9,109 0/0:4,0:4:12.04:0,12,149 0/0:6,0:6:15.05:0,15,182 0/0:7,0:7:12.04:0,12,154 0/0:7,0:7:18.05:0,18,225 0/0:6,0:6:18.03:0,18,210 0/0:5,0:5:12.04:0,12,147 0/0:4,0:4:6.02:0,6,83 0/0:2,0:2:6.02:0,6,75 0/0:4,0:4:12.04:0,12,148 0/0:6,0:6:15.04:0,15,178 0/0:5,0:5:12.04:0,12,147 0/0:4,0:4:12.04:0,12,147 0/0:6,0:6:15.05:0,15,183 0/0:4,0:4:12.03:0,12,131 0/0:5,0:5:12.04:0,12,152 12 48151822 . C G 1488.64 . AC=23;AF=0.280;AN=82;BaseQRankSum=-0.864;DP=208;Dels=0.00;FS=2.209;HRun=1;HaplotypeScore=0.3277;InbreedingCoeff=-0.0188;MQ=57.99;MQ0=0;MQRankSum=0.185;QD=15.19;ReadPosRankSum=-3.932 GT:AD:DP:GQ:PL 0/0:5,0:5:12.04:0,12,154 0/0:3,0:3:9.03:0,9,106 0/0:5,0:5:15.05:0,15,190 0/1:3,1:4:27.97:28,0,109 0/1:6,2:8:53.73:54,0,186 0/0:5,0:5:12.03:0,12,149 0/0:5,0:5:15.04:0,15,179 0/0:5,0:5:6.02:0,6,70 1/1:0,5:5:12.03:148,12,0 0/1:2,3:5:62.07:91,0,62 1/1:0,2:2:6.02:70,6,0 0/1:1,2:3:24.41:63,0,24 0/0:5,0:5:12.03:0,12,141 0/1:2,7:9:49.31:199,0,49 0/1:6,4:10:99:99,0,198 0/1:2,2:4:57.44:57,0,65 0/1:2,3:5:61.33:85,0,61 0/1:2,1:3:12.66:13,0,67 0/0:4,0:4:12.04:0,12,145 0/0:6,0:6:18.05:0,18,219 0/0:9,0:9:21.07:0,21,265 0/0:2,0:2:6.02:0,6,78 0/0:6,0:6:15.04:0,15,184 0/0:8,0:8:21.06:0,21,248 0/0:3,0:3:3.01:0,3,31 0/0:3,0:3:9.02:0,9,109 0/0:2,1:3:3.01:0,3,39 0/1:3,2:5:55.09:55,0,84 0/1:2,2:4:35.74:36,0,68 1/1:0,3:3:9.01:91,9,0 0/1:4,3:7:82.90:83,0,120 0/1:4,5:9:99:140,0,117 0/0:6,0:6:12.04:0,12,164 0/1:1,3:4:27.28:103,0,27 ./. 1/1:0,6:6:18.05:224,18,0 0/0:9,0:9:18.06:0,18,236 0/0:7,0:7:12.04:0,12,165 0/0:5,0:5:15.05:0,15,193 0/0:4,0:4:6.02:0,6,74 0/1:1,1:2:31.78:33,0,32 0/0:1,0:1:3.01:0,3,39 12 48181849 . C T 923.12 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.100;DP=2273;Dels=0.00;FS=0.773;HRun=0;HaplotypeScore=1.6401;InbreedingCoeff=-0.0120;MQ=59.27;MQ0=0;MQRankSum=1.180;QD=15.13;ReadPosRankSum=-0.959 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,129,1571 0/0:51,0:51:99:0,147,1795 0/0:46,0:46:99:0,135,1673 0/0:98,0:98:99:0,274,3454 0/0:76,0:76:99:0,226,2916 0/0:55,0:55:99:0,150,1949 0/0:52,0:52:99:0,141,1809 0/0:55,0:55:99:0,147,1901 0/0:45,0:45:99:0,135,1628 0/0:47,0:47:99:0,135,1634 0/0:56,0:56:99:0,162,1960 0/0:53,0:53:99:0,147,1775 0/0:29,0:29:84.25:0,84,1026 0/0:56,0:56:99:0,156,1888 0/0:120,0:121:99:0,328,3937 0/0:49,0:49:99:0,144,1747 0/1:29,32:61:99:969,0,720 0/0:46,0:46:99:0,135,1612 0/0:73,0:74:99:0,193,2252 0/0:67,0:67:99:0,187,2247 0/0:76,0:78:99:0,202,2406 0/0:45,0:46:99:0,126,1477 0/0:71,0:71:99:0,202,2610 0/0:37,0:37:99:0,102,1348 0/0:42,0:42:99:0,111,1414 0/0:51,0:51:99:0,141,1791 0/0:30,0:30:84.26:0,84,1037 0/0:50,0:50:99:0,147,1764 0/0:35,0:35:99:0,102,1282 0/0:44,0:44:99:0,123,1509 0/0:47,0:47:99:0,135,1653 0/0:82,0:82:99:0,214,2661 0/0:42,0:42:99:0,108,1352 0/0:40,0:40:99:0,111,1343 0/0:42,0:42:99:0,126,1497 0/0:51,0:51:99:0,141,1751 0/0:55,0:55:99:0,153,1798 0/0:46,0:46:99:0,132,1570 0/0:46,0:46:99:0,135,1639 0/0:59,0:59:99:0,172,2081 0/0:47,0:47:99:0,129,1610 0/0:48,0:48:99:0,141,1726 12 48359641 . C A 554.56 . 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G T 5194.76 . 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C T 7152.61 . 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G A 1665.44 . 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C T 2681.71 . 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G A 25003.40 . 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A G 1517.54 . 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G T 56.79 . 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T C 1811.56 . 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C A 1476.12 . 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G A 610.90 . 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G A 1384.40 . 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T C 50881.53 . 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C T 2530.13 . 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C T 1558.89 . 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G A 931.14 . 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C T 497.97 . 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T C 92.35 . 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G T 969.83 . 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A G 85208.40 . 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T A 3019.39 . 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C G 262.25 . 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C T 1096.02 . 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G A 1457.34 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.446;DP=5181;DS;Dels=0.00;FS=4.271;HRun=0;HaplotypeScore=2.1141;InbreedingCoeff=-0.0120;MQ=59.53;MQ0=0;MQRankSum=1.003;QD=15.50;ReadPosRankSum=0.011 GT:AD:DP:GQ:PL 0/0:85,0:85:99:0,229,2777 0/0:106,0:106:99:0,271,3401 0/0:80,0:80:99:0,220,2690 0/0:212,0:212:99:0,545,7155 0/0:229,0:229:99:0,584,7821 0/0:237,1:239:99:0,588,8208 0/0:191,0:192:99:0,485,6461 0/0:199,0:199:99:0,527,6962 0/0:99,0:99:99:0,268,3270 0/0:93,0:93:99:0,250,3064 0/0:83,0:83:99:0,232,2843 0/0:103,0:103:99:0,277,3449 0/0:91,0:91:99:0,247,3081 0/0:76,0:76:99:0,208,2547 0/0:209,0:211:99:0,551,6782 0/0:64,0:64:99:0,178,2197 0/0:109,0:109:99:0,283,3546 0/0:96,0:96:99:0,256,3188 0/0:151,0:151:99:0,394,4869 0/0:137,0:137:99:0,358,4436 0/0:145,0:146:99:0,364,4608 0/0:75,0:75:99:0,193,2402 0/0:202,0:202:99:0,539,7178 0/0:201,1:202:99:0,455,6592 0/0:228,0:228:99:0,563,7482 0/0:196,1:197:99:0,512,6713 0/0:58,0:58:99:0,163,2037 0/0:83,0:83:99:0,220,2752 0/0:74,0:74:99:0,199,2450 0/0:98,0:98:99:0,268,3346 0/0:71,0:71:99:0,199,2444 0/0:160,1:161:99:0,403,5065 0/1:41,53:94:99:1504,0,1104 0/0:71,0:71:99:0,196,2429 0/0:102,0:102:99:0,259,3241 0/0:76,0:76:99:0,208,2641 0/0:150,0:151:99:0,370,4607 0/0:104,0:104:99:0,277,3403 0/0:83,0:83:99:0,220,2652 0/0:65,0:65:99:0,190,2266 0/0:81,0:81:99:0,232,2768 0/0:104,0:104:99:0,283,3462 12 51203371 . C T 21430 . 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T G 25.11 . 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G T 3373.70 . 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T C 16990.66 . 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A AG 14679.81 . 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C G 3394.35 . 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C T 9949.06 . 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A T 24112.11 . AC=29;AF=0.345;AN=84;BaseQRankSum=18.116;DP=2092;Dels=0.00;FS=20.657;HRun=1;HaplotypeScore=1.6506;InbreedingCoeff=-0.1060;MQ=59.04;MQ0=0;MQRankSum=-0.877;QD=17.24;ReadPosRankSum=0.446 GT:AD:DP:GQ:PL 0/1:13,15:28:99:446,0,365 0/1:13,17:30:99:459,0,359 0/0:33,0:33:99:0,99,1118 1/1:0,122:123:99:4259,358,0 0/1:47,58:107:99:1733,0,1316 0/1:29,38:67:99:1177,0,791 0/0:77,0:78:99:0,220,2547 0/1:36,37:73:99:944,0,1017 0/0:40,0:40:99:0,117,1304 0/0:40,0:40:99:0,108,1251 0/0:35,0:36:99:0,105,1199 0/1:14,14:28:99:414,0,405 0/1:12,8:20:99:229,0,303 1/1:0,36:36:99:1246,102,0 0/1:77,59:137:99:1629,0,2108 0/1:24,13:37:99:354,0,662 0/0:32,0:32:87.24:0,87,999 0/0:35,0:35:99:0,102,1159 0/1:26,27:53:99:705,0,743 0/1:26,20:46:99:528,0,723 0/1:26,43:69:99:1232,0,665 0/1:18,19:37:99:527,0,504 0/1:61,60:122:99:1715,0,1650 0/0:68,1:69:99:0,160,2177 0/1:31,38:70:99:1030,0,854 0/1:35,16:51:99:360,0,1012 0/1:11,13:24:99:399,0,306 0/1:12,14:26:99:396,0,332 0/1:20,20:40:99:576,0,536 1/1:0,34:34:99:1198,99,0 0/1:20,8:28:99:210,0,615 0/1:39,30:69:99:800,0,1007 1/1:0,44:44:99:1547,129,0 0/0:37,0:37:99:0,102,1183 0/0:40,0:40:99:0,120,1361 0/0:45,0:45:99:0,129,1484 0/0:61,0:61:99:0,172,2011 0/0:23,1:24:66.18:0,66,749 0/0:29,0:29:78.23:0,78,904 0/0:29,0:29:87.25:0,87,1003 0/0:31,0:32:90.24:0,90,1010 0/0:33,0:33:93.24:0,93,1041 12 52309205 . A C 20.41 . 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A AC 6.83 . 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G T 315.93 . AC=11;AF=0.131;AN=84;BaseQRankSum=-16.091;DP=1614;Dels=0.00;FS=480.402;HRun=3;HaplotypeScore=0.8597;InbreedingCoeff=-0.1843;MQ=58.96;MQ0=0;MQRankSum=0.008;QD=0.71;ReadPosRankSum=-11.566 GT:AD:DP:GQ:PL 0/0:20,7:27:3.74:0,4,461 0/0:25,7:32:44.50:0,44,749 0/0:23,2:25:28.51:0,29,616 0/0:51,20:71:27.77:0,28,1429 0/0:52,11:63:99:0,132,1712 0/0:59,14:73:99:0,123,1527 0/0:39,9:48:58.12:0,58,901 0/0:33,6:39:78.21:0,78,967 0/0:22,6:28:31.51:0,32,623 0/0:21,4:25:48.13:0,48,561 0/0:29,7:36:41.53:0,42,764 0/0:21,8:29:31.20:0,31,592 0/0:20,7:27:6.26:0,6,545 0/1:18,6:24:50.13:50,0,538 0/1:60,28:88:5.39:5,0,1526 0/0:17,5:22:2.02:2,0,417 0/0:27,12:39:22.83:0,23,719 0/1:26,7:33:26.44:26,0,605 0/1:51,15:66:43.19:43,0,1383 0/0:40,7:47:41.09:0,41,1082 0/0:27,11:38:2.21:2,0,583 0/0:21,3:25:45.11:0,45,518 0/1:43,17:60:25.66:26,0,1239 0/0:39,9:48:35.33:0,35,946 0/0:38,9:47:83.05:0,83,1042 0/0:39,15:54:28.51:0,29,1200 0/0:20,7:27:26.25:0,26,538 0/0:20,6:26:23.42:0,23,504 0/1:15,3:18:12.18:12,0,410 0/0:21,4:25:27.21:0,27,552 0/1:20,11:31:46.09:46,0,498 0/0:40,5:45:68.62:0,69,1075 0/0:36,7:43:30.09:0,30,913 0/0:27,10:37:40.58:0,41,764 0/0:22,6:28:38.71:0,39,682 0/1:23,11:34:87.10:87,0,493 0/1:25,15:40:99:113,0,608 0/0:26,10:36:2.03:2,0,674 0/0:28,6:34:21.01:0,21,786 0/1:25,5:30:16.24:16,0,584 0/0:16,8:25:17.43:0,17,447 0/1:13,8:21:20.20:20,0,283 12 52636874 . C T 1613.05 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.845;DP=1706;Dels=0.00;FS=0.499;HRun=0;HaplotypeScore=1.4977;InbreedingCoeff=-0.0244;MQ=59.22;MQ0=0;MQRankSum=0.877;QD=12.90;ReadPosRankSum=1.245 GT:AD:DP:GQ:PL 0/0:29,0:29:75.21:0,75,896 0/0:27,0:27:66.16:0,66,777 0/0:31,0:31:81.22:0,81,956 0/0:76,0:76:99:0,199,2424 0/0:84,1:85:99:0,194,2734 0/1:30,23:53:99:740,0,826 0/0:55,0:55:99:0,144,1805 0/1:37,35:72:99:935,0,1019 0/0:30,0:30:81.22:0,81,926 0/0:38,0:38:99:0,102,1174 0/0:21,0:21:60.16:0,60,682 0/0:41,0:41:99:0,108,1208 0/0:17,0:17:45.11:0,45,515 0/0:25,0:25:69.19:0,69,804 0/0:97,0:97:99:0,241,2828 0/0:25,0:25:66.19:0,66,790 0/0:35,0:35:93.22:0,93,1079 0/0:27,0:27:72.18:0,72,831 0/0:49,0:49:99:0,126,1410 0/0:48,0:48:99:0,120,1388 0/0:58,0:58:99:0,153,1790 0/0:26,0:26:72.17:0,72,832 0/0:88,0:89:99:0,250,3068 0/0:42,0:42:99:0,120,1520 0/0:64,0:64:99:0,181,2216 0/0:38,0:39:99:0,102,1228 0/0:15,0:15:39.10:0,39,473 0/0:30,0:30:81.20:0,81,929 0/0:29,0:29:87.23:0,87,980 0/0:37,0:37:96.27:0,96,1133 0/0:34,0:34:90.25:0,90,1034 0/0:60,0:60:99:0,165,1878 0/0:35,0:35:90.24:0,90,1058 0/0:28,0:28:81.19:0,81,911 0/0:28,0:28:69.18:0,69,815 0/0:29,0:29:84.20:0,84,944 0/0:45,0:45:99:0,114,1315 0/0:31,0:31:81.19:0,81,939 0/0:32,0:32:75.18:0,75,879 0/0:25,0:25:63.15:0,63,729 0/0:25,0:25:72.17:0,72,812 0/0:24,0:24:66.19:0,66,776 12 52642430 . C T 1544.27 . AC=2;AF=0.024;AN=84;BaseQRankSum=6.308;DP=1444;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.6905;InbreedingCoeff=-0.0244;MQ=58.57;MQ0=0;MQRankSum=1.979;QD=15.14;ReadPosRankSum=0.899 GT:AD:DP:GQ:PL 0/0:23,0:23:69.17:0,69,747 0/0:21,0:21:63.14:0,63,691 0/0:24,0:24:66.16:0,66,710 0/0:71,0:71:99:0,211,2446 0/0:77,0:77:99:0,223,2636 0/1:28,36:64:99:1105,0,786 0/1:21,17:38:99:502,0,653 0/0:47,0:47:99:0,138,1655 0/0:33,0:33:99:0,99,1094 0/0:14,0:14:42.11:0,42,465 0/0:11,0:11:33.07:0,33,350 0/0:25,0:25:72.16:0,72,768 0/0:18,0:18:54.12:0,54,574 0/0:20,0:20:51.13:0,51,567 0/0:69,0:69:99:0,195,2093 0/0:20,0:20:57.14:0,57,627 0/0:18,0:18:51.13:0,51,562 0/0:14,0:14:42.11:0,42,457 0/0:53,0:53:99:0,159,1737 0/0:46,0:46:99:0,132,1434 0/0:58,0:58:99:0,165,1789 0/0:47,1:48:99:0,110,1421 0/0:95,0:95:99:0,283,3400 0/0:50,0:50:99:0,144,1706 0/0:54,0:54:99:0,159,1895 0/0:40,0:40:99:0,117,1388 0/0:20,0:20:57.09:0,57,590 0/0:13,0:13:39.07:0,39,400 0/0:18,0:18:54.13:0,54,581 0/0:25,0:25:69.15:0,69,736 0/0:18,0:18:54.14:0,54,593 0/0:54,0:54:99:0,150,1641 0/0:40,0:40:99:0,120,1308 0/0:23,0:23:63.15:0,63,675 0/0:13,0:13:39.10:0,39,426 0/0:24,0:24:66.18:0,66,743 0/0:45,0:46:99:0,126,1372 0/0:21,0:21:63.12:0,63,655 0/0:14,0:14:42.11:0,42,458 0/0:15,0:15:45.11:0,45,492 0/0:24,0:24:69.14:0,69,720 0/0:25,0:25:75.13:0,75,790 12 52699053 . A G 1743.10 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.988;DP=4719;DS;Dels=0.00;FS=2.231;HRun=1;HaplotypeScore=3.1900;InbreedingCoeff=-0.0244;MQ=51.75;MQ0=245;MQRankSum=1.693;QD=9.27;ReadPosRankSum=1.096 GT:AD:DP:GQ:PL 0/0:76,0:76:99:0,205,2408 0/1:71,39:111:99:897,0,1720 0/1:41,36:77:99:908,0,1040 0/0:172,0:172:99:0,439,5413 0/0:142,0:142:99:0,340,4320 0/0:117,0:117:99:0,286,3660 0/0:99,0:99:99:0,244,3103 0/0:118,0:118:99:0,289,3607 0/0:98,0:98:99:0,265,3196 0/0:105,0:105:99:0,280,3329 0/0:97,0:97:99:0,262,3172 0/0:92,0:94:99:0,238,2897 0/0:89,0:89:99:0,244,2965 0/0:98,0:98:99:0,250,3030 0/0:248,0:249:99:0,626,7426 0/0:85,0:85:99:0,217,2594 0/0:94,0:94:99:0,241,2883 0/0:89,0:89:99:0,220,2660 0/0:143,0:143:99:0,388,4714 0/0:168,0:170:99:0,406,5082 0/0:146,0:146:99:0,376,4600 0/0:94,0:96:99:0,238,2838 0/0:178,0:178:99:0,427,5390 0/0:100,0:101:99:0,241,3072 0/0:129,0:129:99:0,313,3915 0/0:77,0:77:99:0,199,2401 0/0:87,0:87:99:0,223,2711 0/0:82,0:82:99:0,211,2562 0/0:96,0:96:99:0,250,3050 0/0:102,0:102:99:0,259,3131 0/0:80,0:80:99:0,202,2486 0/0:162,0:162:99:0,394,4834 0/0:110,0:110:99:0,277,3343 0/0:104,0:104:99:0,262,3240 0/0:89,0:89:99:0,244,2936 0/0:106,0:107:99:0,274,3316 0/0:150,0:150:99:0,403,4859 0/0:111,0:111:99:0,283,3479 0/0:106,0:107:99:0,268,3181 0/0:97,0:97:99:0,244,2986 0/0:85,0:85:99:0,214,2576 0/0:99,0:99:99:0,259,3134 12 52710715 . G A 52130.89 . AC=33;AF=0.393;AN=84;BaseQRankSum=12.247;DP=4817;DS;Dels=0.00;FS=8.431;HRun=0;HaplotypeScore=4.7501;InbreedingCoeff=-0.1480;MQ=58.62;MQ0=3;MQRankSum=11.563;QD=17.04;ReadPosRankSum=1.389 GT:AD:DP:GQ:PL 0/1:50,29:79:99:771,0,1338 1/1:2,107:109:99:3496,244,0 0/1:47,54:101:99:1469,0,1177 0/0:206,0:208:99:0,569,7195 0/0:148,0:148:99:0,427,5309 0/1:76,56:132:99:1666,0,2048 0/1:61,48:109:99:1389,0,1781 0/1:53,54:107:99:1656,0,1364 0/1:40,55:95:99:1506,0,1018 0/1:45,46:91:99:1334,0,1301 0/1:44,37:82:99:956,0,1067 0/1:51,56:107:99:1585,0,1250 0/1:37,52:89:99:1476,0,925 1/1:0,78:78:99:2556,205,0 0/1:134,116:250:99:3093,0,3571 0/0:99,0:99:99:0,283,3231 0/1:51,39:91:99:1081,0,1335 0/0:93,0:93:99:0,253,2924 0/1:78,73:151:99:1919,0,2038 1/1:0,143:143:99:4743,385,0 0/1:78,69:148:99:1933,0,1969 0/0:113,1:115:99:0,281,3651 0/0:219,0:219:99:0,611,7651 0/0:120,0:120:99:0,325,4063 0/1:58,68:126:99:1939,0,1680 0/1:45,44:89:99:1304,0,1319 1/1:0,76:76:99:2718,223,0 1/1:0,97:97:99:3300,268,0 0/1:52,41:94:99:1191,0,1468 0/1:51,52:103:99:1541,0,1363 0/1:45,48:94:99:1410,0,1142 0/1:72,82:154:99:2303,0,1784 0/0:107,0:107:99:0,301,3509 0/0:92,0:92:99:0,262,2981 0/0:98,0:98:99:0,271,3137 0/0:116,0:116:99:0,307,3623 0/0:122,0:122:99:0,346,3958 0/0:120,2:122:99:0,268,3786 0/1:43,45:88:99:1273,0,1141 0/0:97,0:97:99:0,268,3031 0/1:48,43:91:99:1306,0,1264 0/1:43,41:85:99:1218,0,1100 12 52710721 . G C 51168.14 . AC=31;AF=0.369;AN=84;BaseQRankSum=24.361;DP=4821;DS;Dels=0.00;FS=2.053;HRun=1;HaplotypeScore=4.8131;InbreedingCoeff=-0.0736;MQ=58.17;MQ0=5;MQRankSum=5.260;QD=17.90;ReadPosRankSum=0.620 GT:AD:DP:GQ:PL 0/1:49,29:78:99:807,0,1263 1/1:2,101:103:99:3445,235,0 0/1:50,50:100:99:1433,0,1245 0/0:212,0:212:99:0,581,7352 0/0:157,0:158:99:0,448,5577 0/1:76,54:130:99:1779,0,2275 0/0:111,0:111:99:0,307,3853 0/1:52,58:110:99:1891,0,1406 0/1:42,59:101:99:1629,0,1091 0/1:43,49:92:99:1397,0,1211 0/1:48,33:82:99:992,0,1234 0/1:54,56:110:99:1578,0,1382 0/0:83,0:84:99:0,220,2614 1/1:0,83:83:99:2851,226,0 0/1:130,117:247:99:3339,0,3545 0/0:98,0:98:99:0,292,3293 0/1:49,43:92:99:1222,0,1342 0/0:92,0:92:99:0,256,2996 0/1:73,78:152:99:2250,0,1981 1/1:0,140:140:99:4636,361,0 0/1:80,66:146:99:1936,0,2076 0/0:118,1:119:99:0,290,3842 0/0:220,0:220:99:0,605,7660 0/0:120,0:120:99:0,316,3992 0/1:61,72:133:99:2248,0,1772 0/1:43,44:87:99:1374,0,1318 1/1:0,76:76:99:2743,220,0 1/1:0,97:97:99:3374,268,0 0/1:54,45:99:99:1257,0,1513 0/1:44,52:96:99:1595,0,1190 0/1:42,45:87:99:1323,0,1122 0/1:69,89:158:99:2498,0,1763 0/0:106,0:106:99:0,298,3462 0/0:92,0:92:99:0,262,2976 0/0:100,0:100:99:0,274,3217 0/0:112,0:112:99:0,319,3685 0/0:118,0:118:99:0,325,3775 0/0:115,0:115:99:0,322,3756 0/1:47,43:90:99:1257,0,1295 0/0:105,0:105:99:0,298,3376 0/1:49,39:88:99:1172,0,1360 0/1:42,38:80:99:1142,0,1110 12 52793813 . C T 1074.23 . 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C T 16869.80 . 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T G 62311.13 . 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A G 26.90 . 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GAGCC G 4768.26 . 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GCC G 15288.52 . 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A G 19084.22 . 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G A 72701.20 . 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G A 79486.98 . 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C T 1408.33 . 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T C 16336.76 . 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A G 12.24 . 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A G 314.43 . 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G A 5911.03 . 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C T 11801.22 . 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G C 5353.26 . 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G A 3898.10 . 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C T 1867.85 . 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C T 32709.74 . 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G A 1541.46 . 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C T 9882.29 . 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T C 117078.08 . 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A C 4953.70 . 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C T 1429.12 . 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A G 23548.80 . 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G A 1830.48 . 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T C 47959.36 . 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C T 6647.19 . 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C T 21270.03 . AC=30;AF=0.357;AN=84;BaseQRankSum=-9.333;DP=2104;Dels=0.00;FS=4.835;HRun=1;HaplotypeScore=0.7637;InbreedingCoeff=0.0666;MQ=59.45;MQ0=0;MQRankSum=0.277;QD=18.16;ReadPosRankSum=1.705 GT:AD:DP:GQ:PL 0/1:27,17:44:99:492,0,861 0/1:19,16:35:99:425,0,570 0/1:18,22:40:99:633,0,475 0/1:40,35:75:99:975,0,1313 1/1:0,63:63:99:2209,178,0 0/0:47,0:47:99:0,132,1722 0/0:31,0:31:84.25:0,84,1081 0/1:25,28:53:99:861,0,737 0/0:58,0:58:99:0,165,2042 0/0:37,0:37:99:0,102,1243 0/0:34,0:34:93.28:0,93,1152 0/1:30,25:55:99:652,0,884 0/0:30,0:30:90.27:0,90,1093 1/1:0,46:46:99:1623,135,0 0/0:156,0:156:99:0,409,5100 0/1:17,16:33:99:485,0,501 0/0:55,0:55:99:0,153,1878 1/1:0,38:38:99:1327,111,0 0/1:45,38:83:99:1108,0,1277 0/0:73,0:73:99:0,184,2323 0/1:32,47:79:99:1359,0,918 0/1:26,27:53:99:809,0,725 0/0:59,0:59:99:0,169,2225 0/1:19,18:37:99:512,0,602 0/0:48,0:48:99:0,141,1843 1/1:0,41:41:99:1362,111,0 0/0:28,0:28:84.24:0,84,1020 0/1:28,24:52:99:671,0,791 0/0:34,0:34:96.29:0,96,1187 0/0:39,0:39:99:0,111,1330 0/1:25,14:39:99:342,0,777 0/0:64,0:64:99:0,175,2179 0/0:46,0:46:99:0,126,1531 0/1:25,26:51:99:784,0,756 1/1:2,38:40:29.76:1158,30,0 0/0:44,0:44:99:0,120,1493 0/1:35,19:54:99:486,0,1027 0/1:21,17:38:99:477,0,630 1/1:0,41:41:99:1424,117,0 0/0:50,0:50:99:0,147,1806 0/1:23,21:44:99:625,0,693 0/1:20,17:37:99:471,0,605 12 53088525 . G A 3886.64 . 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T C 2761.84 . AC=1;AF=0.012;AN=84;BaseQRankSum=9.738;DP=6038;DS;Dels=0.00;FS=4.370;HRun=1;HaplotypeScore=2.4009;InbreedingCoeff=-0.0120;MQ=59.53;MQ0=0;MQRankSum=-0.854;QD=15.87;ReadPosRankSum=0.687 GT:AD:DP:GQ:PL 0/0:119,0:119:99:0,340,4017 0/0:117,0:117:99:0,310,3752 0/0:95,0:95:99:0,250,3010 0/0:248,1:250:99:0,656,7961 0/0:240,0:240:99:0,647,7902 0/0:198,0:198:99:0,530,6575 0/0:174,0:174:99:0,463,5752 0/1:79,95:174:99:2808,0,2077 0/0:98,0:98:99:0,274,3251 0/0:86,0:87:99:0,235,2799 0/0:108,1:109:99:0,301,3564 0/0:100,0:100:99:0,283,3348 0/0:98,0:98:99:0,253,3088 0/0:93,0:93:99:0,265,3134 0/0:247,0:250:99:0,671,7927 0/0:110,1:112:99:0,301,3587 0/0:103,0:103:99:0,274,3302 0/0:84,0:85:99:0,238,2815 0/0:207,0:207:99:0,557,6702 0/0:250,0:250:99:0,662,8017 0/0:248,1:250:99:0,650,7906 0/0:144,1:145:99:0,391,4683 0/0:249,0:250:99:0,665,8066 0/0:160,1:162:99:0,409,5069 0/0:180,0:180:99:0,463,5710 0/0:192,0:192:99:0,487,6005 0/0:70,0:70:99:0,190,2276 0/0:96,1:97:99:0,246,3182 0/0:88,1:89:99:0,253,2961 0/0:103,0:104:99:0,274,3300 0/0:98,0:98:99:0,283,3387 0/0:249,1:250:99:0,650,7832 0/0:138,0:138:99:0,379,4506 0/0:89,0:89:99:0,250,3005 0/0:92,0:92:99:0,268,3155 0/0:106,1:107:99:0,289,3456 0/0:240,0:240:99:0,626,7609 0/0:105,0:105:99:0,286,3439 0/0:108,0:108:99:0,295,3516 0/0:107,0:107:99:0,295,3512 0/0:93,0:93:99:0,262,3079 0/0:112,0:112:99:0,307,3666 12 53217701 . C A 22766.44 . AC=45;AF=0.536;AN=84;BaseQRankSum=-22.624;DP=1584;Dels=0.00;FS=34.415;HRun=1;HaplotypeScore=1.2550;InbreedingCoeff=-0.1009;MQ=59.00;MQ0=0;MQRankSum=0.547;QD=18.45;ReadPosRankSum=2.729 GT:AD:DP:GQ:PL 1/1:0,24:24:72.19:842,72,0 1/1:0,35:35:96.27:1141,96,0 0/1:12,16:28:99:475,0,323 0/1:37,38:75:99:1129,0,1200 0/0:63,0:63:99:0,187,2482 0/1:21,14:35:99:405,0,678 0/0:54,0:54:99:0,157,2096 0/1:22,15:37:99:440,0,626 0/1:12,15:27:99:392,0,381 0/1:14,18:32:99:437,0,372 1/1:0,26:26:72.21:855,72,0 0/1:17,17:34:99:437,0,451 0/0:29,0:29:69.19:0,69,861 0/1:16,14:30:99:346,0,523 0/1:58,62:120:99:1712,0,1565 1/1:1,33:34:81.23:975,81,0 0/1:20,17:37:99:458,0,577 1/1:0,28:28:81.24:967,81,0 0/1:25,14:39:99:392,0,785 0/0:46,0:46:99:0,129,1635 0/1:33,16:49:99:376,0,946 0/1:16,14:30:99:383,0,512 1/1:1,65:67:99:2222,147,0 0/1:10,14:24:99:411,0,326 0/0:44,0:44:99:0,123,1670 1/1:0,36:37:99:1195,99,0 0/0:23,0:23:66.21:0,66,821 0/0:24,0:24:69.21:0,69,858 0/1:16,14:30:99:370,0,519 0/1:15,19:34:99:516,0,412 0/1:16,10:26:99:228,0,507 0/0:67,0:67:99:0,169,2147 0/1:16,24:40:99:706,0,427 1/1:0,22:22:54.15:640,54,0 1/1:0,26:26:72.22:871,72,0 1/1:0,24:24:72.21:851,72,0 0/1:34,18:52:99:437,0,966 0/1:18,11:29:99:317,0,493 1/1:0,23:23:69.19:792,69,0 0/1:7,16:23:99:497,0,160 0/1:20,7:27:99:181,0,560 0/1:16,14:30:99:373,0,434 12 53233089 . G A 785.06 . AC=3;AF=0.036;AN=84;BaseQRankSum=6.352;DP=924;Dels=0.00;FS=6.120;HRun=1;HaplotypeScore=0.6866;InbreedingCoeff=-0.0376;MQ=58.84;MQ0=0;MQRankSum=0.253;QD=9.69;ReadPosRankSum=1.399 GT:AD:DP:GQ:PL 0/0:20,0:20:57.13:0,57,617 0/0:20,0:20:57.14:0,57,621 0/0:30,0:30:90.24:0,90,996 0/0:37,0:37:99:0,111,1304 0/1:18,9:27:99:221,0,558 0/0:34,0:34:93.24:0,93,1082 0/0:14,0:14:42.12:0,42,494 0/0:25,0:25:72.21:0,72,852 0/0:24,0:24:72.16:0,72,775 0/0:18,0:18:54.14:0,54,603 0/0:15,0:15:45.08:0,45,476 0/0:11,0:11:33.08:0,33,362 0/0:20,0:20:60.16:0,60,663 0/0:25,0:25:72.20:0,72,822 0/0:58,1:59:99:0,162,1769 0/0:21,0:21:60.13:0,60,664 0/0:28,0:28:78.20:0,78,866 0/0:15,0:15:45.13:0,45,510 0/0:17,0:17:48.11:0,48,515 0/0:29,0:29:81.20:0,81,879 0/1:15,14:29:99:432,0,348 0/0:14,0:14:36.10:0,36,395 0/0:38,0:38:99:0,114,1351 0/0:21,0:21:60.15:0,60,696 0/0:27,0:27:69.20:0,69,843 0/0:28,0:28:81.23:0,81,945 0/0:14,0:14:39.09:0,39,425 0/0:12,0:12:30.08:0,30,343 0/0:12,0:12:33.09:0,33,366 0/0:10,0:10:30.08:0,30,336 0/0:18,0:18:48.13:0,48,533 0/1:17,8:25:99:207,0,466 0/0:16,0:16:45.11:0,45,487 0/0:15,0:15:45.12:0,45,506 0/0:19,0:19:54.11:0,54,591 0/0:9,0:9:27.07:0,27,306 0/0:30,0:30:75.20:0,75,841 0/0:16,1:17:14.13:0,14,467 0/0:17,0:17:51.13:0,51,554 0/0:24,0:24:69.16:0,69,737 0/0:15,0:15:42.10:0,42,457 0/0:25,0:25:72.18:0,72,775 12 53293789 . T TGGGGT 75.50 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.455;DP=2348;FS=713.718;HRun=0;HaplotypeScore=256.9767;InbreedingCoeff=-0.0305;MQ=35.96;MQ0=252;MQRankSum=1.785;QD=1.09;ReadPosRankSum=-11.907 GT:AD:DP:GQ:PL 0/0:57,0:48:99:0,108,2204 0/0:53,0:49:99:0,120,2547 0/0:50,0:45:99:0,120,2508 0/0:79,1:76:99:0,109,3274 0/0:46,0:44:67.38:0,67,1873 0/0:47,0:46:0.32:11,0,1775 0/0:31,0:30:18.46:0,18,1338 0/0:49,0:48:38.22:0,38,1752 0/0:64,0:56:99:0,116,2982 0/0:55,0:46:99:0,120,2384 0/0:52,0:49:91.29:0,91,2540 0/0:56,0:51:98.41:0,98,2396 0/0:39,0:33:93.32:0,93,1984 0/0:49,0:42:67.62:0,68,2080 0/0:166,0:143:99:0,136,6811 0/0:49,0:42:99:0,123,2566 0/0:60,0:49:99:0,126,2629 0/0:51,0:43:99:0,105,2045 0/0:74,0:66:25.21:0,25,2965 0/0:69,0:64:99:0,140,2980 0/0:55,0:45:22.10:0,22,2019 0/0:46,0:41:70.12:0,70,1788 0/0:69,0:66:99:0,105,2707 0/0:39,0:36:36.17:0,36,1615 0/0:46,0:44:99:0,99,2091 0/0:28,0:29:1.90:0,2,1190 0/0:46,0:35:66.10:0,66,1654 0/0:54,0:43:70.71:0,71,2003 0/0:48,0:40:7.93:0,8,1676 0/0:44,0:41:66.80:0,67,2047 0/0:44,0:38:99:0,99,2061 0/0:62,0:62:95.55:0,96,2412 0/0:42,0:40:80.40:0,80,1955 0/0:57,0:46:69.48:0,69,1993 0/0:54,0:51:75.63:0,76,2605 0/0:51,0:46:85.88:0,86,2228 0/1:63,0:56:99:129,0,1924 0/0:56,0:52:40.52:0,41,2658 0/0:51,0:43:99:0,99,2064 0/0:53,0:40:53.49:0,53,2167 0/0:41,0:36:90.27:0,90,1754 0/0:65,0:59:99:0,140,2812 12 53431298 . T A 1228.07 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.051;DP=2629;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=1.2873;InbreedingCoeff=-0.0244;MQ=23.75;MQ0=953;MQRankSum=-0.820;QD=5.66;ReadPosRankSum=-0.049 GT:AD:DP:GQ:PL 0/0:49,0:49:90.25:0,90,1016 0/0:56,0:56:90.23:0,90,995 0/0:45,0:45:87.22:0,87,987 0/0:74,0:74:99:0,153,1736 0/0:70,0:70:99:0,120,1335 0/0:63,0:63:99:0,141,1615 0/0:49,0:49:93.25:0,93,1034 0/0:59,0:59:99:0,123,1405 0/0:66,0:66:99:0,105,1193 0/0:45,0:45:72.15:0,72,792 0/0:55,0:56:87.24:0,87,975 0/0:58,0:58:99:0,102,1137 0/0:44,0:44:48.09:0,48,509 0/0:49,0:49:99:0,102,1138 0/1:111,63:174:99:1202,0,1074 0/1:35,8:43:88.57:89,0,645 0/0:63,0:63:99:0,120,1312 0/0:52,0:52:93.24:0,93,1033 0/0:78,1:79:99:0,123,1375 0/0:74,0:74:99:0,114,1250 0/0:80,0:80:99:0,132,1481 0/0:56,0:56:99:0,114,1272 0/0:76,0:76:99:0,168,1881 0/0:61,0:61:78.20:0,78,888 0/0:69,0:70:99:0,123,1411 0/0:65,0:65:99:0,120,1350 0/0:34,0:34:78.18:0,78,856 0/0:64,0:64:99:0,126,1386 0/0:52,0:52:93.21:0,93,1028 0/0:49,0:49:87.18:0,87,954 0/0:55,0:55:99:0,102,1117 0/0:83,0:84:99:0,114,1260 0/0:42,1:43:81.21:0,81,911 0/0:51,0:51:99:0,102,1124 0/0:70,0:70:99:0,111,1261 0/0:51,0:51:99:0,108,1215 0/0:96,1:97:99:0,153,1739 0/0:56,0:56:93.26:0,93,1042 0/0:64,0:64:99:0,105,1168 0/0:67,0:67:99:0,111,1264 0/0:57,0:57:99:0,105,1163 0/0:58,0:58:75.19:0,75,840 12 53445666 . C T 1663.99 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.398;DP=4406;Dels=0.00;FS=0.975;HRun=0;HaplotypeScore=2.1675;InbreedingCoeff=-0.0120;MQ=59.43;MQ0=0;MQRankSum=1.099;QD=14.86;ReadPosRankSum=-0.245 GT:AD:DP:GQ:PL 0/0:78,0:78:99:0,208,2548 0/0:75,0:76:99:0,211,2506 0/0:70,0:70:99:0,178,2174 0/0:201,0:202:99:0,509,6546 0/0:170,0:170:99:0,436,5746 0/0:149,0:149:99:0,376,4861 0/0:125,0:125:99:0,313,4096 0/0:133,0:133:99:0,319,4146 0/0:72,0:72:99:0,193,2368 0/0:83,0:83:99:0,214,2516 0/0:99,0:100:99:0,274,3240 0/0:76,0:76:99:0,208,2518 0/0:75,1:76:99:0,176,2428 0/0:65,0:65:99:0,178,2148 0/0:243,0:243:99:0,623,7455 0/0:80,0:80:99:0,214,2569 0/0:86,0:86:99:0,244,2898 0/0:68,0:68:99:0,184,2179 0/0:127,1:134:99:0,297,3881 0/0:140,0:141:99:0,364,4430 0/0:138,0:141:99:0,340,4210 0/0:75,0:75:99:0,199,2367 0/0:219,0:219:99:0,545,7076 0/0:110,0:110:99:0,304,3948 0/0:140,0:140:99:0,355,4636 0/0:115,0:115:99:0,304,3963 0/0:65,0:65:99:0,180,2112 0/0:79,0:79:99:0,214,2578 0/0:57,0:57:99:0,162,1918 0/0:87,1:88:99:0,200,2763 0/0:66,0:66:99:0,180,2151 0/0:134,0:135:99:0,352,4265 0/1:49,62:112:99:1710,0,1291 0/0:87,0:87:99:0,250,2984 0/0:88,0:89:99:0,235,2742 0/0:104,0:104:99:0,283,3416 0/0:113,0:114:99:0,313,3733 0/0:94,1:95:99:0,225,3109 0/0:82,0:82:99:0,205,2514 0/0:69,0:69:99:0,202,2373 0/0:64,0:64:99:0,175,2114 0/0:72,0:72:99:0,193,2364 12 53452515 . G A 861.50 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.087;DP=2199;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.0263;InbreedingCoeff=-0.0244;MQ=59.35;MQ0=0;MQRankSum=0.374;QD=10.64;ReadPosRankSum=-0.016 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,126,1373 0/0:72,0:72:99:0,196,2196 0/0:43,0:43:99:0,114,1262 0/0:98,0:98:99:0,262,3012 0/0:61,0:61:99:0,162,1830 0/0:57,0:57:99:0,153,1797 0/0:46,0:47:99:0,129,1512 0/0:41,0:41:99:0,123,1407 0/0:45,0:45:99:0,126,1364 0/0:40,0:40:99:0,108,1195 0/0:38,0:38:96.24:0,96,1047 0/0:54,0:54:99:0,147,1657 0/0:32,0:32:81.19:0,81,901 0/0:56,0:56:99:0,162,1780 0/0:130,0:130:99:0,355,3988 0/0:44,0:44:99:0,126,1377 0/0:48,0:48:99:0,138,1473 0/0:41,0:42:99:0,111,1235 0/0:49,0:50:99:0,138,1532 0/0:63,0:63:99:0,159,1811 0/0:62,0:62:99:0,168,1868 0/0:54,0:54:99:0,159,1732 0/0:93,0:93:99:0,256,2938 0/0:39,0:39:99:0,111,1285 0/0:53,0:53:99:0,141,1661 0/0:38,0:38:99:0,105,1178 0/0:38,0:38:99:0,108,1188 0/0:50,0:51:99:0,141,1586 0/0:46,0:46:99:0,126,1387 0/1:19,21:40:99:592,0,483 0/1:28,13:41:99:331,0,746 0/0:66,0:66:99:0,189,2087 0/0:45,0:45:99:0,129,1439 0/0:41,0:41:99:0,105,1139 0/0:42,0:42:99:0,99,1118 0/0:57,0:57:99:0,162,1770 0/0:58,0:58:99:0,156,1753 0/0:45,0:45:99:0,123,1332 0/0:43,0:43:99:0,111,1170 0/0:44,0:44:99:0,120,1279 0/0:44,0:44:99:0,123,1341 0/0:48,0:48:99:0,135,1504 12 53454193 . G A 1061.23 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.172;DP=1143;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9481;InbreedingCoeff=-0.0249;MQ=58.83;MQ0=0;MQRankSum=-0.244;QD=10.72;ReadPosRankSum=-0.994 GT:AD:DP:GQ:PL 0/0:26,0:26:72.20:0,72,819 0/0:23,0:23:60.16:0,60,689 0/0:21,0:21:51.15:0,51,636 0/0:58,0:58:99:0,132,1675 0/0:48,0:48:99:0,123,1522 0/0:30,0:30:78.24:0,78,960 0/0:18,0:18:51.12:0,51,585 0/0:34,0:34:87.26:0,87,1090 0/0:16,1:19:15:0,15,491 0/0:9,1:10:27.06:0,27,301 0/0:18,0:18:54.13:0,54,608 0/0:20,0:20:60.13:0,60,647 0/0:12,0:13:24.07:0,24,300 0/0:31,0:31:90.23:0,90,1005 0/1:43,37:81:99:871,0,1071 0/0:22,0:23:57.16:0,57,643 0/1:8,10:18:99:253,0,208 0/0:15,0:15:39.11:0,39,462 0/0:32,0:32:87.23:0,87,987 0/0:42,1:43:99:0,114,1323 0/0:27,0:27:72.19:0,72,835 0/0:30,0:30:81.21:0,81,929 0/0:48,0:48:99:0,123,1532 0/0:28,0:28:69.20:0,69,851 0/0:37,0:37:93.27:0,93,1129 0/0:36,0:36:90.26:0,90,1089 0/0:20,0:20:60.17:0,60,697 0/0:24,0:24:72.17:0,72,800 0/0:24,0:24:69.18:0,69,770 0/0:15,0:15:42.12:0,42,485 0/0:17,0:17:45.12:0,45,502 0/0:34,0:34:96.23:0,96,1072 0/0:23,0:23:60.14:0,60,704 0/0:28,0:28:75.20:0,75,854 0/0:17,0:17:45.10:0,45,502 0/0:21,0:21:60.16:0,60,685 0/0:35,0:35:90.24:0,90,1013 0/0:19,0:19:48.13:0,48,558 0/0:16,0:16:42.11:0,42,484 0/0:17,0:17:45.13:0,45,519 0/0:19,0:19:54.14:0,54,612 0/0:27,0:27:78.21:0,78,877 12 53459616 . C T 23.38 . AC=3;AF=0.036;AN=84;BaseQRankSum=-21.976;DP=3651;Dels=0.00;FS=712.272;HRun=1;HaplotypeScore=3.4199;InbreedingCoeff=-0.0374;MQ=58.89;MQ0=0;MQRankSum=-1.743;QD=0.15;ReadPosRankSum=-12.202 GT:AD:DP:GQ:PL 0/0:33,13:46:59.95:0,60,923 0/0:48,14:62:22.51:0,23,1540 0/0:40,10:50:91.52:0,92,1314 0/0:161,79:242:99:0,196,4804 0/0:127,70:198:99:0,142,3896 0/0:140,54:194:99:0,258,4325 0/0:112,35:147:99:0,156,3115 0/0:117,43:161:99:0,225,3541 0/0:40,13:53:99:0,102,1256 0/0:49,9:58:99:0,109,1687 0/0:36,12:48:40.26:0,40,1127 0/0:34,11:45:22.23:0,22,1045 0/0:34,8:42:59.51:0,60,939 0/0:45,2:47:99:0,102,1221 0/0:158,13:175:99:0,383,4981 0/1:39,14:53:31.77:32,0,1024 0/0:49,8:57:99:0,106,1601 0/0:35,17:52:41.66:0,42,960 0/0:99,7:106:99:0,259,3179 0/0:101,19:121:99:0,192,3013 0/0:69,23:93:86.07:0,86,2406 0/0:56,10:67:99:0,153,1847 0/0:203,16:222:99:0,503,6579 0/0:112,6:118:99:0,225,3386 0/0:115,36:152:99:0,187,3449 0/0:106,4:110:99:0,231,3178 0/0:35,6:41:96.28:0,96,1185 0/0:55,1:56:99:0,132,1626 0/0:34,9:43:60.76:0,61,1053 0/1:43,16:60:13.81:14,0,1172 0/0:37,13:50:38.50:0,38,1108 0/0:85,18:104:94.29:0,94,2453 0/0:51,12:63:30.71:0,31,1365 0/0:47,7:55:99:0,128,1561 0/0:42,12:54:99:0,126,1548 0/0:41,16:57:99:0,113,1351 0/0:69,14:83:99:0,105,2170 0/0:40,10:50:67.96:0,68,1198 0/0:47,12:59:99:0,110,1578 0/0:43,13:56:12:0,12,1280 0/1:30,8:38:50.50:51,0,923 0/0:52,11:63:87.29:0,87,1640 12 53509276 . C G 302.29 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.964;DP=1117;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8107;InbreedingCoeff=-0.0121;MQ=59.05;MQ0=0;MQRankSum=1.172;QD=12.09;ReadPosRankSum=0.827 GT:AD:DP:GQ:PL 0/0:28,0:28:81.25:0,81,1008 0/0:18,0:18:54.17:0,54,671 0/0:17,0:17:48.14:0,48,590 0/0:63,0:63:99:0,169,2219 0/0:65,0:65:99:0,181,2415 0/0:34,0:34:87.28:0,87,1155 0/0:23,0:23:69.23:0,69,929 0/0:21,0:21:60.19:0,60,787 0/0:20,0:20:57.17:0,57,718 0/0:22,0:22:60.18:0,60,749 0/0:17,0:17:45.10:0,45,533 0/0:17,0:17:51.15:0,51,630 0/0:13,0:13:36.11:0,36,448 0/0:25,0:25:72.23:0,72,909 0/0:53,0:53:99:0,156,1897 0/0:23,0:23:69.18:0,69,812 0/0:23,0:23:66.21:0,66,848 0/0:17,0:17:51.16:0,51,632 0/0:34,0:34:96.26:0,96,1156 0/0:45,0:45:99:0,123,1535 0/0:23,0:23:69.20:0,69,842 0/0:23,0:23:66.21:0,66,839 0/0:66,0:66:99:0,184,2435 0/0:31,0:31:75.23:0,75,1002 0/0:36,0:36:99:0,105,1357 0/0:30,0:30:87.27:0,87,1105 0/0:25,0:25:72.21:0,72,886 0/0:21,0:21:60.19:0,60,748 0/0:12,0:12:30.07:0,30,368 0/0:19,0:19:51.16:0,51,650 0/0:18,0:18:54.17:0,54,684 0/0:33,0:33:96.29:0,96,1203 0/0:20,0:20:54.17:0,54,689 0/0:19,0:19:57.17:0,57,712 0/1:14,11:25:99:348,0,381 0/0:21,0:21:60.19:0,60,750 0/0:23,0:23:69.21:0,69,857 0/0:22,0:22:66.18:0,66,817 0/0:28,0:28:78.24:0,78,985 0/0:17,0:17:51.16:0,51,636 0/0:11,0:11:30.09:0,30,378 0/0:16,0:16:48.14:0,48,580 12 53509339 . G T 2161.83 . AC=14;AF=0.167;AN=84;BaseQRankSum=-2.278;DP=455;Dels=0.00;FS=2.071;HRun=1;HaplotypeScore=0.2864;InbreedingCoeff=0.1369;MQ=59.04;MQ0=0;MQRankSum=1.261;QD=17.72;ReadPosRankSum=-0.475 GT:AD:DP:GQ:PL 0/0:8,0:8:24.08:0,24,300 0/1:5,2:7:46.36:46,0,172 0/1:2,3:5:49.97:70,0,50 0/1:12,9:21:99:256,0,395 1/1:0,21:21:63.20:797,63,0 0/0:16,0:16:42.13:0,42,529 0/0:8,0:8:21.03:0,21,237 0/0:9,0:9:27.09:0,27,350 0/0:9,0:9:27.08:0,27,329 0/0:9,0:9:24.07:0,24,293 0/0:11,0:11:33.10:0,33,404 0/0:6,0:6:12.04:0,12,149 0/0:9,0:9:24.08:0,24,308 0/0:9,0:9:24.07:0,24,295 0/0:23,0:23:63.19:0,63,774 0/0:17,0:17:45.11:0,45,525 0/0:13,0:13:39.12:0,39,487 0/0:10,0:10:24.06:0,24,291 0/1:9,5:14:99:138,0,289 0/1:4,5:9:99:149,0,123 0/1:1,4:5:21.93:133,0,22 1/1:0,8:8:24.07:291,24,0 0/0:29,0:29:84.23:0,84,1059 0/0:9,0:9:27.09:0,27,357 0/0:13,0:13:33.11:0,33,427 0/0:16,0:16:45.14:0,45,570 0/1:4,3:7:83.60:84,0,125 0/1:3,7:10:80.55:223,0,81 0/0:11,0:11:27.08:0,27,338 0/0:8,0:8:21.07:0,21,268 0/0:6,0:6:15.05:0,15,187 0/0:14,0:14:42.12:0,42,508 0/0:11,0:11:30.10:0,30,379 0/0:8,0:8:21.06:0,21,241 0/0:11,0:11:33.09:0,33,404 0/0:12,0:12:36.09:0,36,427 0/1:6,1:7:15.91:16,0,202 0/0:7,0:7:21.06:0,21,256 0/1:4,4:8:94.62:122,0,95 0/0:8,0:8:21.06:0,21,249 0/0:6,0:6:15.05:0,15,184 0/0:7,0:7:21.07:0,21,262 12 53509340 . C T 2038.73 . AC=14;AF=0.167;AN=84;BaseQRankSum=-4.838;DP=447;Dels=0.00;FS=4.064;HRun=1;HaplotypeScore=0.2774;InbreedingCoeff=0.1389;MQ=59.02;MQ0=0;MQRankSum=0.152;QD=16.99;ReadPosRankSum=0.093 GT:AD:DP:GQ:PL 0/0:7,0:7:21.07:0,21,270 0/1:5,1:6:19.74:20,0,169 0/1:2,3:5:58.26:70,0,58 0/1:12,9:21:99:234,0,407 1/1:0,21:21:63.19:785,63,0 0/0:16,0:16:39.12:0,39,498 0/0:8,0:8:18.05:0,18,225 0/0:8,0:8:21.07:0,21,286 0/0:9,0:9:27.09:0,27,341 0/0:9,0:9:27.06:0,27,327 0/0:11,0:11:33.10:0,33,410 0/0:6,0:6:15.05:0,15,183 0/0:9,0:9:24.07:0,24,305 0/0:9,0:9:27.07:0,27,325 0/0:24,0:24:63.20:0,63,783 0/0:16,0:16:45.13:0,45,543 0/0:14,0:14:39.12:0,39,483 0/0:9,0:9:24.08:0,24,309 0/1:9,5:14:99:144,0,297 0/1:4,4:8:99:113,0,129 0/1:1,4:5:21.93:135,0,22 1/1:0,8:8:24.07:283,24,0 0/0:28,0:28:81.26:0,81,1072 0/0:9,0:9:27.09:0,27,354 0/0:13,0:13:39.11:0,39,500 0/0:15,0:15:39.13:0,39,520 0/1:4,3:7:87.97:88,0,122 0/1:3,6:9:87.79:191,0,88 0/0:11,0:11:27.09:0,27,356 0/0:8,0:8:21.06:0,21,263 0/0:6,0:6:18.05:0,18,217 0/0:13,0:13:39.12:0,39,490 0/0:11,0:11:27.09:0,27,340 0/0:8,0:8:21.06:0,21,243 0/0:11,0:11:33.08:0,33,404 0/0:11,0:11:33.11:0,33,427 0/1:7,1:8:16.73:17,0,209 0/0:7,0:7:21.07:0,21,264 0/1:4,4:8:93.07:126,0,93 0/0:8,0:8:24.08:0,24,304 0/0:6,0:6:18.04:0,18,200 0/0:7,0:7:21.07:0,21,266 12 53662624 . C A 22485.23 . AC=64;AF=0.762;AN=84;BaseQRankSum=-15.113;DP=972;Dels=0.00;FS=14.196;HRun=0;HaplotypeScore=0.4719;InbreedingCoeff=-0.0501;MQ=59.05;MQ0=0;MQRankSum=-0.687;QD=24.05;ReadPosRankSum=-0.027 GT:AD:DP:GQ:PL 1/1:0,14:15:39.12:470,39,0 1/1:0,18:18:45.11:542,45,0 1/1:0,25:25:60.18:724,60,0 0/1:19,12:31:99:330,0,539 1/1:0,33:33:93.28:1121,93,0 1/1:0,27:27:69.21:861,69,0 1/1:0,13:13:36.11:443,36,0 1/1:0,24:24:69.19:815,69,0 0/0:21,0:21:60.19:0,60,762 0/0:16,0:16:48.15:0,48,607 0/1:12,13:25:99:340,0,328 1/1:0,19:19:51.14:600,51,0 1/1:0,15:15:42.12:497,42,0 1/1:0,17:18:51.15:597,51,0 1/1:0,90:90:99:2711,223,0 1/1:0,17:17:48.14:567,48,0 1/1:0,15:15:45.13:524,45,0 0/1:7,12:19:99:353,0,203 0/1:11,15:26:99:406,0,286 0/1:16,15:31:99:399,0,423 1/1:0,30:30:81.23:972,81,0 1/1:0,33:33:81.22:957,81,0 0/1:28,15:43:99:358,0,914 0/1:4,13:17:91:280,0,91 0/1:15,11:27:99:321,0,443 0/1:11,10:21:99:268,0,325 1/1:0,13:13:39.10:439,39,0 1/1:0,12:12:36.11:433,36,0 0/1:13,10:23:99:240,0,383 1/1:0,20:20:60.17:694,60,0 0/1:5,15:20:99:467,0,122 0/1:22,12:34:99:317,0,596 1/1:0,19:19:57.17:668,57,0 0/1:8,15:23:99:419,0,230 1/1:0,11:11:33.09:386,33,0 0/1:12,8:20:99:224,0,367 1/1:1,26:27:72.19:848,72,0 0/1:14,6:20:99:127,0,444 1/1:0,10:10:30.09:344,30,0 1/1:0,22:22:63.18:735,63,0 1/1:0,14:14:39.12:458,39,0 0/1:7,8:15:99:231,0,209 12 53671264 . G A 839.95 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.593;DP=1211;Dels=0.00;FS=3.082;HRun=0;HaplotypeScore=0.5367;InbreedingCoeff=-0.0244;MQ=59.15;MQ0=0;MQRankSum=0.776;QD=12.00;ReadPosRankSum=1.930 GT:AD:DP:GQ:PL 0/0:23,0:23:66.16:0,66,727 0/0:27,0:27:78.18:0,78,869 0/0:16,0:16:48.11:0,48,505 0/0:33,0:33:96.29:0,96,1161 0/0:48,0:48:99:0,135,1670 0/1:22,15:37:99:467,0,587 0/1:18,15:33:99:436,0,464 0/0:33,0:33:87.25:0,87,1053 0/0:29,0:29:75.20:0,75,861 0/0:28,0:28:72.20:0,72,830 0/0:19,0:19:57.15:0,57,629 0/0:14,0:14:39.10:0,39,436 0/0:14,0:14:42.10:0,42,445 0/0:20,0:20:57.16:0,57,641 0/0:94,0:94:99:0,253,2817 0/0:29,0:29:81.22:0,81,916 0/0:20,0:20:60.17:0,60,675 0/0:18,0:18:48.13:0,48,527 0/0:36,0:36:99:0,105,1142 0/0:44,0:44:99:0,126,1409 0/0:43,0:43:99:0,108,1240 0/0:22,0:22:66.15:0,66,718 0/0:39,1:40:77.88:0,78,1276 0/0:31,0:31:81.24:0,81,978 0/0:35,0:35:99:0,102,1238 0/0:48,0:48:99:0,126,1542 0/0:19,0:19:57.15:0,57,629 0/0:36,0:36:99:0,102,1143 0/0:10,0:10:27.08:0,27,312 0/0:22,0:22:66.16:0,66,731 0/0:28,0:28:75.19:0,75,846 0/0:32,0:32:93.25:0,93,1048 0/0:23,0:23:63.16:0,63,704 0/0:18,0:18:48.10:0,48,529 0/0:19,0:20:57.15:0,57,634 0/0:18,1:19:51.14:0,51,587 0/0:33,0:33:96.25:0,96,1061 0/0:31,0:31:90.19:0,90,966 0/0:26,0:26:78.20:0,78,860 0/0:17,0:17:48.13:0,48,542 0/0:17,0:17:51.14:0,51,571 0/0:26,0:26:72.19:0,72,809 12 53676181 . A G 737.58 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.536;DP=2532;DS;Dels=0.00;FS=2.186;HRun=0;HaplotypeScore=1.3889;InbreedingCoeff=-0.0120;MQ=59.38;MQ0=0;MQRankSum=0.690;QD=13.41;ReadPosRankSum=-0.831 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,111,1302 0/0:49,0:50:99:0,135,1572 0/0:39,0:40:99:0,108,1242 0/0:99,1:100:99:0,289,3320 0/0:98,0:100:99:0,289,3372 0/0:68,1:69:99:0,193,2273 0/1:30,25:55:99:784,0,863 0/0:74,0:74:99:0,211,2445 0/0:50,0:50:99:0,138,1575 0/0:42,1:44:99:0,117,1306 0/0:47,0:47:99:0,129,1522 0/0:49,0:49:99:0,135,1545 0/0:44,0:45:99:0,126,1460 0/0:38,0:38:99:0,111,1256 0/0:153,0:153:99:0,436,5036 0/0:42,1:44:99:0,120,1360 0/0:41,2:44:99:0,114,1337 0/0:38,1:40:99:0,105,1188 0/0:78,0:78:99:0,226,2608 0/0:91,0:91:99:0,247,2868 0/0:82,0:83:99:0,232,2661 0/0:51,0:51:99:0,138,1630 0/0:101,0:101:99:0,289,3375 0/0:70,0:70:99:0,196,2264 0/0:60,0:60:99:0,162,1852 0/0:64,0:66:99:0,183,2094 0/0:30,0:30:84.25:0,84,1003 0/0:44,0:44:99:0,126,1449 0/0:57,0:58:99:0,159,1833 0/0:37,0:38:99:0,102,1161 0/0:46,1:47:99:0,138,1602 0/0:80,0:82:99:0,226,2615 0/0:44,0:44:99:0,120,1363 0/0:52,1:53:99:0,153,1725 0/0:56,1:57:99:0,156,1804 0/0:42,0:43:99:0,126,1469 0/0:94,0:96:99:0,259,2994 0/0:61,0:62:99:0,159,1786 0/0:45,1:47:99:0,129,1463 0/0:60,0:62:99:0,174,1945 0/0:39,0:39:99:0,111,1253 0/0:45,0:45:99:0,129,1478 12 53682986 . C T 80110.20 . AC=43;AF=0.512;AN=84;BaseQRankSum=-38.003;DP=5522;DS;Dels=0.00;FS=12.738;HRun=0;HaplotypeScore=4.4851;InbreedingCoeff=-0.0959;MQ=59.22;MQ0=0;MQRankSum=4.656;QD=18.26;ReadPosRankSum=-4.025 GT:AD:DP:GQ:PL 0/1:51,62:114:99:1740,0,1422 0/0:106,0:106:99:0,292,3671 0/0:100,1:101:99:0,238,3378 0/1:117,129:246:99:3470,0,3617 0/1:98,77:175:99:2180,0,3278 0/1:103,81:184:99:2376,0,3314 0/0:162,0:163:99:0,454,6097 0/1:97,85:182:99:2216,0,2826 1/1:1,95:96:99:3074,236,0 1/1:0,74:75:99:2430,202,0 0/1:52,51:103:99:1447,0,1570 0/0:103,0:103:99:0,295,3634 0/1:53,41:94:99:1131,0,1500 0/1:67,55:122:99:1423,0,2105 0/0:250,0:250:99:0,656,8070 0/0:112,0:112:99:0,316,3928 0/0:100,1:101:99:0,250,3437 0/1:55,48:103:99:1267,0,1653 0/1:114,71:185:99:1790,0,3210 0/1:109,87:196:99:2247,0,3076 1/1:2,158:160:99:5097,424,0 1/1:2,106:108:99:3407,237,0 1/1:0,247:247:99:8127,674,0 0/1:67,52:119:99:1438,0,2039 0/1:91,75:166:99:1963,0,2886 0/1:67,64:131:99:1826,0,2056 1/1:0,90:90:99:2961,244,0 0/1:47,47:94:99:1310,0,1380 1/1:0,83:83:99:2740,232,0 0/1:46,58:104:99:1597,0,1351 0/1:58,47:105:99:1339,0,1684 1/1:2,159:161:99:5171,436,0 0/1:78,64:142:99:1703,0,2190 1/1:0,108:108:99:3559,295,0 0/1:55,49:104:99:1395,0,1523 0/1:60,52:112:99:1417,0,1691 0/1:89,78:168:99:2100,0,2470 0/1:52,47:99:99:1311,0,1447 1/1:0,110:110:99:3564,307,0 0/0:110,0:111:99:0,310,3885 0/0:86,1:87:99:0,205,2905 0/1:54,48:102:99:1295,0,1567 12 53687116 . A G 1084.57 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.160;DP=2535;Dels=0.00;FS=5.705;HRun=2;HaplotypeScore=1.3950;InbreedingCoeff=-0.0244;MQ=59.38;MQ0=0;MQRankSum=-1.146;QD=10.04;ReadPosRankSum=0.774 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,129,1577 0/0:49,0:49:99:0,129,1569 0/0:39,0:39:99:0,111,1338 0/0:85,0:85:99:0,229,2815 0/0:91,0:91:99:0,247,3060 0/0:72,0:72:99:0,196,2525 0/0:75,0:75:99:0,199,2519 0/0:92,0:92:99:0,235,2952 0/0:42,0:42:99:0,120,1442 0/0:43,0:43:99:0,108,1318 0/0:43,0:43:99:0,111,1383 0/0:65,0:65:99:0,166,2042 0/0:38,0:38:99:0,105,1282 0/0:50,0:50:99:0,138,1697 0/0:163,0:163:99:0,421,5143 0/0:34,0:34:99:0,99,1198 0/0:46,0:46:99:0,132,1583 0/0:40,0:40:99:0,114,1376 0/0:79,0:79:99:0,208,2511 0/0:69,0:69:99:0,172,2175 0/0:73,0:73:99:0,202,2431 0/0:50,0:51:99:0,135,1646 0/0:142,0:143:99:0,364,4550 0/0:76,0:76:99:0,205,2554 0/0:94,0:94:99:0,244,3065 0/0:71,0:71:99:0,199,2441 0/0:33,0:33:96.29:0,96,1147 0/0:40,0:40:99:0,108,1310 0/0:39,0:39:99:0,102,1260 0/0:42,0:42:99:0,108,1324 0/0:54,0:54:99:0,153,1876 0/0:79,0:79:99:0,211,2584 0/0:58,0:58:99:0,156,1902 0/0:50,0:50:99:0,135,1633 0/0:41,0:41:99:0,117,1436 0/0:33,0:33:96.30:0,96,1171 0/1:45,30:75:99:783,0,1234 0/0:45,1:46:97.66:0,98,1394 0/1:19,14:33:99:364,0,565 0/0:51,0:51:99:0,135,1685 0/0:38,0:38:99:0,105,1267 0/0:53,0:53:99:0,138,1694 12 53687240 . G T 142.66 . AC=6;AF=0.071;AN=84;BaseQRankSum=-13.558;DP=2461;Dels=0.00;FS=964.833;HRun=2;HaplotypeScore=1.6664;InbreedingCoeff=-0.0798;MQ=58.92;MQ0=0;MQRankSum=-1.004;QD=0.38;ReadPosRankSum=-13.704 GT:AD:DP:GQ:PL 0/0:31,13:44:9.71:0,10,704 0/0:31,10:41:41.73:0,42,847 0/0:31,12:44:50.63:0,51,890 0/0:79,36:115:90.74:0,91,2446 0/0:79,36:115:50.91:0,51,2595 0/0:67,26:94:99:0,122,2129 0/0:42,23:65:56.04:0,56,1261 0/0:66,34:100:99:0,129,1828 0/0:28,14:42:41.16:0,41,794 0/0:20,13:33:20.56:0,21,561 0/0:33,12:45:58.89:0,59,1003 0/1:27,15:42:16.44:16,0,707 0/0:19,11:30:34.62:0,35,376 0/1:21,11:32:25.87:26,0,685 0/1:82,58:140:24.39:24,0,2159 0/0:28,10:38:75.22:0,75,898 0/0:24,15:39:59.21:0,59,694 0/0:21,12:33:24.93:0,25,663 0/1:49,29:78:99:108,0,1162 0/0:64,24:89:99:0,132,1719 0/0:59,16:75:29.84:0,30,1611 0/0:32,9:41:78.19:0,78,912 0/0:90,42:132:78:0,78,2858 0/0:49,28:77:99:0,109,1621 0/0:59,22:81:99:0,106,1950 0/0:57,29:86:65.59:0,66,1703 0/0:14,7:21:17.42:0,17,412 0/0:25,12:37:66.17:0,66,779 0/0:23,11:34:60.18:0,60,738 0/0:27,9:36:47.51:0,48,764 0/0:31,11:42:38.32:0,38,966 0/0:65,20:85:95.06:0,95,1594 0/0:32,10:42:62.38:0,62,997 0/0:21,9:30:18.01:0,18,497 0/1:29,12:41:24.17:24,0,742 0/0:25,19:44:9.94:0,10,698 0/0:43,17:60:23.17:0,23,1325 0/0:37,14:51:62.60:0,63,1047 0/1:27,20:47:48.48:48,0,806 0/0:36,16:52:41.15:0,41,1047 0/0:28,10:38:72.23:0,72,894 0/0:33,17:50:71.23:0,71,851 12 53823307 . G A 2979.13 . AC=3;AF=0.036;AN=84;BaseQRankSum=2.841;DP=2730;DS;Dels=0.00;FS=12.562;HRun=0;HaplotypeScore=0.9909;InbreedingCoeff=-0.0370;MQ=58.04;MQ0=0;MQRankSum=4.119;QD=15.05;ReadPosRankSum=1.904 GT:AD:DP:GQ:PL 0/0:61,0:61:99:0,177,2051 0/0:56,0:56:99:0,153,1859 0/0:54,0:54:99:0,150,1776 0/0:112,0:112:99:0,325,4118 0/0:116,0:116:99:0,325,4155 0/1:33,41:74:99:1248,0,980 0/1:29,33:62:99:1000,0,897 0/1:33,29:62:99:807,0,1031 0/0:63,1:64:99:0,139,1954 0/0:41,0:41:99:0,114,1342 0/0:61,0:61:99:0,159,1896 0/0:52,0:52:99:0,144,1696 0/0:63,0:63:99:0,174,2063 0/0:41,0:41:99:0,111,1296 0/0:158,0:158:99:0,430,5085 0/0:48,0:48:99:0,132,1563 0/0:42,0:42:99:0,126,1513 0/0:60,0:60:99:0,171,2001 0/0:78,0:78:99:0,196,2279 0/0:85,0:85:99:0,226,2655 0/0:68,1:69:99:0,187,2205 0/0:59,0:59:99:0,165,1962 0/0:113,0:113:99:0,310,3995 0/0:46,1:48:99:0,100,1631 0/0:83,0:83:99:0,220,2859 0/0:71,1:72:99:0,178,2527 0/0:40,0:40:99:0,114,1338 0/0:56,0:56:99:0,159,1853 0/0:53,0:53:99:0,135,1631 0/0:51,0:51:99:0,141,1686 0/0:48,0:48:99:0,138,1637 0/0:81,0:81:99:0,211,2517 0/0:52,0:52:99:0,129,1570 0/0:46,0:46:99:0,126,1452 0/0:60,0:60:99:0,165,1926 0/0:64,0:64:99:0,178,2127 0/0:81,0:83:99:0,220,2594 0/0:57,0:57:99:0,171,1997 0/0:47,0:47:99:0,138,1650 0/0:47,0:47:99:0,138,1603 0/0:46,0:46:99:0,120,1452 0/0:65,0:65:99:0,183,2149 12 53931268 . T G 1864.89 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.330;DP=1850;Dels=0.00;FS=6.680;HRun=2;HaplotypeScore=0.8590;InbreedingCoeff=-0.0244;MQ=59.08;MQ0=1;MQRankSum=0.204;QD=15.41;ReadPosRankSum=-1.030 GT:AD:DP:GQ:PL 0/0:27,0:27:81.24:0,81,976 0/0:26,0:26:78.24:0,78,961 0/0:29,0:29:84.26:0,84,1015 0/0:100,0:100:99:0,301,3687 0/0:84,0:84:99:0,241,2989 0/0:87,0:87:99:0,262,3273 0/0:67,0:67:99:0,196,2478 0/0:69,0:69:99:0,202,2490 0/0:36,0:36:99:0,99,1232 0/0:29,0:29:87.26:0,87,1050 0/0:33,0:33:96.30:0,96,1181 0/0:33,0:33:99:0,99,1206 0/0:28,0:28:81.25:0,81,983 0/0:34,0:34:99:0,102,1255 0/0:101,0:101:99:0,283,3422 0/0:15,0:15:45.14:0,45,541 0/0:28,0:28:84.26:0,84,1031 0/0:20,0:20:60.19:0,60,732 0/0:47,0:47:99:0,135,1649 0/0:48,0:48:99:0,132,1592 0/0:58,0:58:99:0,163,1999 0/0:32,0:32:96.28:0,96,1156 0/0:112,0:112:99:0,334,4131 0/1:30,31:61:99:1001,0,906 0/1:30,30:60:99:926,0,929 0/0:61,0:61:99:0,184,2216 0/0:21,0:21:63.20:0,63,778 0/0:28,0:28:84.26:0,84,1029 0/0:24,0:24:72.19:0,72,868 0/0:41,0:41:99:0,120,1454 0/0:19,0:19:54.17:0,54,670 0/0:79,0:79:99:0,223,2759 0/0:36,0:36:99:0,102,1241 0/0:24,0:24:72.21:0,72,875 0/0:31,0:31:93.28:0,93,1126 0/0:35,0:35:99:0,102,1269 0/0:54,0:54:99:0,156,1851 0/0:18,0:18:54.17:0,54,664 0/0:23,0:23:69.22:0,69,850 0/0:28,0:29:84.26:0,84,1037 0/0:22,0:22:66.21:0,66,813 0/0:41,0:41:99:0,120,1496 12 54110197 . A G 1085.20 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.807;DP=2866;Dels=0.00;FS=3.235;HRun=1;HaplotypeScore=1.3946;InbreedingCoeff=-0.0120;MQ=59.42;MQ0=0;MQRankSum=1.026;QD=17.50;ReadPosRankSum=-0.174 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,144,1845 0/0:68,0:68:99:0,184,2314 0/0:49,0:50:99:0,129,1651 0/0:112,0:112:99:0,313,4040 0/0:92,0:92:99:0,262,3378 0/0:91,0:91:99:0,244,3201 0/1:26,36:62:99:1131,0,722 0/0:68,0:68:99:0,187,2410 0/0:67,0:67:99:0,181,2279 0/0:45,0:46:99:0,126,1573 0/0:56,0:56:99:0,160,1997 0/0:71,0:71:99:0,202,2509 0/0:41,0:41:99:0,111,1398 0/0:46,0:46:99:0,123,1558 0/0:208,0:208:99:0,539,6831 0/0:56,0:56:99:0,156,1948 0/0:57,0:57:99:0,159,1986 0/0:54,0:54:99:0,144,1826 0/0:85,0:85:99:0,235,2955 0/0:98,0:98:99:0,262,3310 0/0:76,0:76:99:0,193,2461 0/0:37,0:37:93.26:0,93,1164 0/0:148,0:148:99:0,379,4985 0/0:69,0:69:99:0,181,2353 0/0:86,0:86:99:0,226,2933 0/0:52,0:52:99:0,153,1938 0/0:50,0:50:99:0,138,1747 0/0:64,0:64:99:0,175,2188 0/0:51,0:51:99:0,129,1636 0/0:62,0:62:99:0,172,2155 0/0:57,0:57:99:0,153,1932 0/0:89,0:89:99:0,238,2990 0/0:60,0:60:99:0,162,2014 0/0:60,0:60:99:0,159,2018 0/0:51,0:51:99:0,138,1745 0/0:57,0:57:99:0,163,2071 0/0:66,0:66:99:0,178,2235 0/0:47,0:47:99:0,132,1649 0/0:35,0:35:96.30:0,96,1194 0/0:61,0:61:99:0,169,2106 0/0:43,1:44:81.05:0,81,1406 0/0:60,0:60:99:0,166,2112 12 54767812 . G A 6782.26 . AC=14;AF=0.167;AN=84;BaseQRankSum=-10.753;DP=1507;Dels=0.00;FS=6.207;HRun=0;HaplotypeScore=0.8536;InbreedingCoeff=0.1429;MQ=59.01;MQ0=0;MQRankSum=-0.470;QD=16.79;ReadPosRankSum=-0.795 GT:AD:DP:GQ:PL 0/1:18,16:34:99:403,0,491 0/1:10,11:21:99:317,0,297 0/0:23,0:24:66.20:0,66,806 0/0:89,0:90:99:0,256,3287 0/0:75,0:75:99:0,214,2792 0/0:54,0:54:99:0,153,1973 0/0:46,0:46:99:0,135,1669 0/0:48,0:48:99:0,135,1778 0/1:10,21:31:99:619,0,279 0/1:20,16:36:99:456,0,598 0/0:21,0:21:63.20:0,63,781 0/1:9,14:23:99:400,0,219 1/1:0,24:24:66.20:799,66,0 0/0:31,0:31:90.25:0,90,1076 0/0:76,0:76:99:0,217,2635 0/0:20,0:20:51.15:0,51,624 0/0:42,0:42:99:0,123,1512 0/1:9,18:27:99:502,0,192 0/0:31,0:31:93.22:0,93,1084 0/0:46,0:46:99:0,126,1577 0/0:41,0:41:99:0,114,1395 0/0:23,0:23:66.21:0,66,828 0/1:45,40:85:99:1091,0,1533 0/0:30,0:30:84.25:0,84,1090 0/0:49,1:50:99:0,101,1573 0/1:27,22:49:99:616,0,753 0/0:24,0:24:72.22:0,72,881 0/0:35,0:35:99:0,102,1234 0/0:16,0:16:48.12:0,48,585 0/0:22,0:22:57.15:0,57,677 0/0:30,0:30:87.26:0,87,1068 0/0:36,0:36:99:0,99,1185 0/0:25,0:25:72.19:0,72,845 0/0:25,0:25:75.18:0,75,899 0/0:21,0:21:60.15:0,60,711 0/0:30,0:30:81.25:0,81,1003 0/0:40,0:40:99:0,105,1232 0/0:28,0:28:78.24:0,78,968 0/0:23,0:23:69.19:0,69,816 1/1:0,28:28:81.23:950,81,0 0/1:14,12:26:99:326,0,409 0/1:9,11:20:99:304,0,250 12 54778212 . G A 121.95 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.947;DP=396;Dels=0.00;FS=6.675;HRun=0;HaplotypeScore=0.3431;InbreedingCoeff=-0.0238;MQ=58.79;MQ0=0;MQRankSum=0.357;QD=11.09;ReadPosRankSum=0.970 GT:AD:DP:GQ:PL 0/0:12,0:12:30.09:0,30,380 0/0:15,0:15:39.11:0,39,445 0/0:3,0:3:9.03:0,9,104 0/0:9,0:9:24.07:0,24,296 0/0:17,0:17:51.14:0,51,598 0/0:14,0:14:36.10:0,36,440 0/0:9,0:9:21.04:0,21,235 0/0:11,0:11:24.07:0,24,305 0/0:9,0:9:27.07:0,27,310 0/0:5,0:5:9.03:0,9,111 0/0:8,0:8:24.07:0,24,279 0/0:8,0:8:21.06:0,21,246 0/0:9,0:9:24.07:0,24,297 0/0:4,0:4:12.04:0,12,153 0/0:29,0:29:78.19:0,78,930 0/0:8,0:8:21.07:0,21,270 0/0:9,0:9:27.07:0,27,306 0/0:6,0:6:18.04:0,18,201 0/0:9,0:9:24.06:0,24,272 0/0:15,0:15:42.12:0,42,504 0/0:14,0:14:36.10:0,36,425 0/0:8,0:8:21.03:0,21,219 0/0:18,0:18:45.13:0,45,527 0/0:5,0:5:15.04:0,15,169 0/0:8,0:8:18.03:0,18,205 0/0:3,0:3:9.03:0,9,105 0/0:9,0:9:27.08:0,27,328 0/0:7,0:7:21.05:0,21,239 0/0:6,0:6:18.05:0,18,201 0/0:7,0:7:18.05:0,18,230 0/0:12,0:12:30.08:0,30,361 0/0:17,0:17:36.11:0,36,470 0/1:5,6:11:99:168,0,126 0/0:2,0:2:6.02:0,6,75 0/0:7,0:7:21.06:0,21,253 0/0:8,0:8:24.07:0,24,298 0/0:15,0:15:39.12:0,39,484 0/0:5,0:5:15.05:0,15,183 0/0:10,0:10:27.06:0,27,296 0/0:6,0:6:18.05:0,18,217 0/0:4,0:4:9.02:0,9,101 0/0:5,0:5:15.04:0,15,182 12 54969870 . T G 1862.63 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.512;DP=3849;DS;Dels=0.00;FS=11.034;HRun=0;HaplotypeScore=2.1170;InbreedingCoeff=-0.0120;MQ=59.51;MQ0=0;MQRankSum=0.663;QD=13.70;ReadPosRankSum=0.354 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,162,1901 0/0:51,0:51:99:0,147,1738 0/0:58,0:59:99:0,168,1961 0/0:172,0:172:99:0,484,5664 0/0:140,0:140:99:0,400,4668 0/0:124,0:124:99:0,361,4363 0/0:106,0:106:99:0,307,3641 0/0:111,0:111:99:0,322,3712 0/0:62,0:62:99:0,177,2044 0/0:72,0:72:99:0,199,2282 0/0:69,0:69:99:0,190,2207 0/0:70,0:70:99:0,193,2244 0/0:48,0:48:99:0,135,1613 0/0:74,0:74:99:0,208,2437 0/0:183,0:185:99:0,514,5929 0/0:79,0:79:99:0,232,2678 0/0:73,0:73:99:0,211,2482 0/0:66,0:66:99:0,184,2176 0/0:117,1:118:99:0,328,3919 0/1:69,67:136:99:1909,0,1956 0/0:121,0:121:99:0,334,3891 0/0:79,0:79:99:0,229,2625 0/0:158,0:158:99:0,454,5323 0/0:113,0:113:99:0,319,3773 0/0:139,0:139:99:0,391,4561 0/0:114,0:114:99:0,325,3770 0/0:56,0:57:99:0,162,1898 0/0:80,0:80:99:0,226,2613 0/0:53,0:53:99:0,153,1795 0/0:68,0:68:99:0,187,2206 0/0:60,0:60:99:0,171,2007 0/0:125,0:125:99:0,340,4060 0/0:88,0:88:99:0,259,3023 0/0:89,0:89:99:0,247,2926 0/0:52,0:52:99:0,153,1817 0/0:89,0:89:99:0,253,2982 0/0:114,0:114:99:0,334,3913 0/0:79,0:79:99:0,211,2502 0/0:75,0:75:99:0,220,2559 0/0:82,0:82:99:0,235,2751 0/0:79,0:79:99:0,220,2558 0/0:62,0:62:99:0,171,2031 12 54975837 . T C 81421.41 . AC=84;AF=1.000;AN=84;BaseQRankSum=1.717;DP=2355;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.2253;InbreedingCoeff=-0.0000;MQ=59.29;MQ0=0;MQRankSum=0.294;QD=34.57;ReadPosRankSum=-0.920 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1406,111,0 1/1:0,44:44:99:1476,114,0 1/1:0,41:41:99:1441,117,0 1/1:0,123:124:99:4404,328,0 1/1:0,112:112:99:4222,319,0 1/1:0,60:60:99:2265,169,0 1/1:0,66:66:99:2511,190,0 1/1:0,78:78:99:2845,217,0 1/1:0,31:31:84.25:1080,84,0 1/1:0,19:19:48.13:612,48,0 1/1:0,37:37:99:1329,105,0 1/1:0,46:46:99:1579,126,0 1/1:0,40:40:99:1444,111,0 1/1:0,36:36:93.28:1174,93,0 1/1:0,147:148:99:4770,388,0 1/1:0,49:49:99:1730,138,0 1/1:0,24:24:63.19:794,63,0 1/1:0,35:35:99:1233,99,0 1/1:0,63:63:99:2081,171,0 1/1:0,93:93:99:3190,253,0 1/1:0,96:96:99:3146,250,0 1/1:0,56:56:99:1891,150,0 1/1:0,127:127:99:4561,346,0 1/1:0,50:50:99:1871,141,0 1/1:0,67:67:99:2407,187,0 1/1:0,67:67:99:2248,172,0 1/1:0,34:34:93.28:1168,93,0 1/1:1,43:44:99:1517,120,0 1/1:0,44:44:99:1491,117,0 1/1:0,36:36:99:1299,105,0 1/1:0,48:48:99:1654,132,0 1/1:0,84:84:99:2700,211,0 1/1:0,57:60:99:1885,153,0 1/1:0,37:37:99:1237,99,0 1/1:0,25:25:72.22:889,72,0 1/1:0,36:36:99:1290,105,0 1/1:0,70:70:99:2181,181,0 1/1:0,43:43:99:1525,123,0 1/1:0,39:39:99:1283,105,0 1/1:0,33:33:93.22:1105,93,0 1/1:0,30:30:87.27:1097,87,0 1/1:0,42:42:99:1391,108,0 12 55354987 . T G 4706.08 . AC=2;AF=0.024;AN=84;BaseQRankSum=11.104;DP=6124;DS;Dels=0.00;FS=0.000;HRun=5;HaplotypeScore=4.8360;InbreedingCoeff=-0.0244;MQ=59.36;MQ0=0;MQRankSum=-0.117;QD=9.47;ReadPosRankSum=0.366 GT:AD:DP:GQ:PL 0/0:87,2:89:99:0,220,2534 0/0:85,2:88:99:0,223,2495 0/0:70,0:70:99:0,186,2128 0/0:240,6:247:99:0,611,6883 0/0:246,3:249:99:0,674,7600 0/1:155,94:249:99:2249,0,3916 0/0:232,5:238:99:0,598,6899 0/1:155,90:246:99:2457,0,3947 0/0:106,0:106:99:0,283,3225 0/0:82,0:82:99:0,220,2471 0/0:92,4:96:99:0,256,2841 0/0:108,3:112:99:0,310,3490 0/0:85,0:86:99:0,232,2648 0/0:94,0:96:99:0,259,2922 0/0:238,4:242:99:0,626,7100 0/0:91,0:91:99:0,244,2764 0/0:114,0:114:99:0,319,3622 0/0:89,2:91:99:0,235,2639 0/0:187,14:203:99:0,465,5486 0/0:241,1:242:99:0,641,7458 0/0:159,10:170:99:0,403,4708 0/0:106,0:106:99:0,280,3191 0/0:246,4:250:99:0,671,7484 0/0:233,5:238:99:0,586,6746 0/0:236,5:244:99:0,605,6954 0/0:244,2:246:99:0,635,7311 0/0:70,2:73:99:0,192,2200 0/0:95,1:96:99:0,219,2829 0/0:101,0:102:99:0,280,3180 0/0:98,2:101:99:0,256,2866 0/0:97,1:98:99:0,262,2955 0/0:233,4:237:99:0,599,7031 0/0:141,2:143:99:0,355,3992 0/0:101,0:103:99:0,277,3210 0/0:96,1:97:99:0,262,2906 0/0:93,4:97:99:0,247,2756 0/0:197,6:203:99:0,472,5420 0/0:96,0:96:99:0,250,2817 0/0:89,0:89:99:0,241,2741 0/0:104,2:107:99:0,292,3257 0/0:86,0:86:99:0,241,2660 0/0:102,1:103:99:0,277,3210 12 55355033 . C T 7440.10 . AC=5;AF=0.060;AN=84;BaseQRankSum=-16.021;DP=6448;DS;Dels=0.00;FS=1.859;HRun=1;HaplotypeScore=3.0227;InbreedingCoeff=-0.0633;MQ=59.45;MQ0=0;MQRankSum=-0.714;QD=13.10;ReadPosRankSum=0.211 GT:AD:DP:GQ:PL 0/0:103,0:103:99:0,286,3578 0/1:50,53:103:99:1416,0,1502 0/1:37,41:78:99:1105,0,1073 0/0:250,0:250:99:0,689,9097 0/0:250,0:250:99:0,668,9016 0/0:241,0:241:99:0,644,8596 0/0:234,0:234:99:0,614,8146 0/0:228,0:228:99:0,596,7963 0/0:128,0:128:99:0,334,4242 0/0:96,0:96:99:0,241,3042 0/0:118,0:119:99:0,304,3860 0/0:121,0:121:99:0,322,4126 0/0:85,0:85:99:0,232,2955 0/0:122,0:122:99:0,331,4201 0/0:249,0:250:99:0,659,8207 0/0:96,0:96:99:0,253,3216 0/0:116,0:116:99:0,319,4013 0/0:107,0:107:99:0,298,3721 0/0:238,0:239:99:0,650,8055 0/1:130,97:227:99:2640,0,3716 0/0:229,0:229:99:0,635,7907 0/0:126,0:126:99:0,343,4308 0/0:246,1:247:99:0,680,9043 0/0:217,0:217:99:0,566,7633 0/0:247,0:247:99:0,650,8612 0/0:224,1:225:99:0,575,8070 0/1:38,44:82:99:1184,0,1118 0/0:97,0:97:99:0,256,3187 0/1:39,39:78:99:1095,0,1064 0/0:104,0:104:99:0,286,3565 0/0:108,0:108:99:0,301,3805 0/0:235,0:235:99:0,614,7805 0/0:165,0:165:99:0,442,5656 0/0:116,0:116:99:0,310,3912 0/0:116,0:116:99:0,325,4086 0/0:124,0:124:99:0,310,3984 0/0:203,0:203:99:0,515,6525 0/0:115,0:115:99:0,313,3927 0/0:98,0:98:99:0,268,3384 0/0:122,0:123:99:0,325,4091 0/0:97,0:97:99:0,268,3384 0/0:103,0:103:99:0,289,3619 12 56117700 . C G 2634.26 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.051;DP=3502;Dels=0.00;FS=2.191;HRun=0;HaplotypeScore=2.0549;InbreedingCoeff=-0.0370;MQ=59.18;MQ0=0;MQRankSum=1.252;QD=11.66;ReadPosRankSum=2.094 GT:AD:DP:GQ:PL 0/0:78,0:79:99:0,199,2557 0/0:72,0:72:99:0,193,2413 0/1:29,41:70:99:1133,0,810 0/0:130,0:130:99:0,343,4660 0/0:124,0:124:99:0,310,4241 0/0:94,0:94:99:0,250,3357 0/1:36,36:72:99:1096,0,1079 0/1:64,20:84:99:481,0,1947 0/0:73,0:73:99:0,193,2443 0/0:58,0:58:99:0,166,2109 0/0:52,0:52:99:0,138,1771 0/0:76,0:77:99:0,211,2689 0/0:56,0:56:99:0,144,1866 0/0:75,0:75:99:0,205,2578 0/0:235,0:235:99:0,575,7397 0/0:81,0:81:99:0,229,2890 0/0:82,0:82:99:0,220,2843 0/0:60,0:60:99:0,163,2043 0/0:88,0:88:99:0,229,2900 0/0:95,0:95:99:0,238,3071 0/0:93,0:93:99:0,253,3180 0/0:69,0:69:99:0,184,2376 0/0:123,0:123:99:0,307,4238 0/0:82,0:82:99:0,208,2840 0/0:106,0:106:99:0,268,3663 0/0:76,0:76:99:0,190,2587 0/0:57,0:57:99:0,153,1979 0/0:79,0:79:99:0,211,2669 0/0:63,0:63:99:0,156,2041 0/0:72,0:72:99:0,196,2509 0/0:59,0:60:99:0,166,2117 0/0:142,0:142:99:0,349,4585 0/0:71,0:71:99:0,184,2352 0/0:64,0:64:99:0,175,2236 0/0:69,0:69:99:0,190,2376 0/0:70,0:70:99:0,190,2476 0/0:91,0:91:99:0,238,3045 0/0:76,0:76:99:0,205,2593 0/0:71,0:71:99:0,196,2482 0/0:79,1:80:99:0,220,2804 0/0:71,0:71:99:0,187,2414 0/0:60,0:60:99:0,166,2107 12 56122084 . G C 328.08 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.144;DP=577;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4224;InbreedingCoeff=-0.0265;MQ=58.14;MQ0=0;MQRankSum=0.439;QD=9.65;ReadPosRankSum=0.745 GT:AD:DP:GQ:PL 0/0:12,0:12:33.11:0,33,426 0/0:14,0:14:36.12:0,36,462 0/0:11,0:11:30.10:0,30,385 0/0:18,0:18:45.15:0,45,604 0/0:24,0:25:57.19:0,57,795 0/0:11,0:11:33.10:0,33,421 0/0:11,0:11:30.10:0,30,413 0/0:16,0:16:45.14:0,45,582 0/0:16,0:16:42.13:0,42,541 0/0:9,0:9:24.08:0,24,308 0/0:11,0:11:33.11:0,33,427 0/0:11,0:11:30.09:0,30,382 0/0:11,0:11:33.10:0,33,404 0/0:17,0:17:51.16:0,51,638 0/0:49,0:49:99:0,132,1676 0/0:11,0:11:33.11:0,33,426 0/0:7,0:7:18.05:0,18,220 0/0:4,0:4:12.02:0,12,139 0/0:11,0:11:33.11:0,33,420 0/0:17,0:17:48.15:0,48,608 0/1:6,7:13:99:223,0,193 0/0:11,0:11:33.10:0,33,405 0/0:25,0:25:63.20:0,63,852 0/0:8,0:8:21.07:0,21,286 0/0:16,0:16:45.15:0,45,615 0/0:16,1:17:39.13:0,39,528 0/0:13,0:13:33.11:0,33,431 0/0:10,0:10:27.09:0,27,352 0/0:10,0:10:24.06:0,24,301 0/0:6,0:6:18.06:0,18,225 0/0:14,0:14:42.13:0,42,522 0/1:14,7:21:99:167,0,377 0/0:19,0:19:54.17:0,54,678 0/0:8,0:8:21.07:0,21,278 0/0:10,0:10:30.09:0,30,373 0/0:15,0:15:45.14:0,45,569 0/0:17,0:17:51.16:0,51,625 0/0:14,0:14:42.13:0,42,514 0/0:7,0:7:18.06:0,18,241 0/0:12,0:12:36.11:0,36,453 0/0:13,0:13:39.12:0,39,494 0/0:6,0:6:15.05:0,15,197 12 56212782 . G A 89.55 . AC=5;AF=0.060;AN=84;BaseQRankSum=-16.192;DP=1984;Dels=0.00;FS=220.827;HRun=1;HaplotypeScore=0.9166;InbreedingCoeff=-0.0815;MQ=58.54;MQ0=0;MQRankSum=0.059;QD=0.23;ReadPosRankSum=-5.677 GT:AD:DP:GQ:PL 0/0:28,16:44:38.76:0,39,798 0/0:30,12:42:63.16:0,63,723 0/0:16,5:21:4.39:0,4,288 0/1:56,31:88:48.03:48,0,1408 0/0:38,24:62:58.54:0,59,999 0/0:39,11:50:42.46:0,42,850 0/0:30,11:41:36.48:0,36,703 0/0:39,14:53:1.73:3,0,621 0/0:28,14:42:23.69:0,24,601 0/0:24,14:38:25.48:0,25,576 0/0:27,11:38:57.03:0,57,636 0/0:25,11:36:54.01:0,54,632 0/0:18,6:24:22.43:0,22,507 0/0:21,12:33:17.59:0,18,532 0/1:96,56:152:24.05:24,0,2337 0/0:26,8:34:34.84:0,35,759 0/0:29,9:38:12.86:0,13,647 0/0:24,7:31:8.82:0,9,613 0/0:31,20:51:43.51:0,44,783 0/0:58,12:70:38.87:0,39,1182 0/0:32,16:49:8.79:0,9,764 0/0:34,8:44:13.35:0,13,964 0/0:50,37:87:51.89:0,52,1146 0/0:45,11:56:99:0,99,1269 0/0:32,10:42:32.46:0,32,666 0/0:41,14:55:47.46:0,47,854 0/0:23,8:31:25.61:0,26,619 0/0:29,11:41:66.20:0,66,810 0/0:24,17:41:18.62:0,19,540 0/0:26,4:31:54.14:0,54,642 0/0:29,14:43:19.80:0,20,735 0/0:46,8:54:96.09:0,96,1108 0/0:42,9:51:43.86:0,44,991 0/0:23,18:41:27.46:0,27,576 0/1:28,13:41:23.23:23,0,671 0/1:35,14:49:48.85:49,0,880 0/1:40,18:58:40.37:40,0,913 0/0:29,8:37:63.15:0,63,751 0/0:17,9:26:27.07:0,27,322 0/0:29,8:39:66.19:0,66,815 0/0:26,11:37:18.28:0,18,574 0/0:33,9:43:81.25:0,81,1013 12 56233313 . G A 610.97 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.128;DP=2103;Dels=0.00;FS=8.953;HRun=0;HaplotypeScore=1.1669;InbreedingCoeff=-0.0120;MQ=59.17;MQ0=0;MQRankSum=0.063;QD=14.90;ReadPosRankSum=-0.226 GT:AD:DP:GQ:PL 0/0:29,0:29:84.26:0,84,1063 0/0:51,0:51:99:0,135,1710 0/0:35,1:36:60.18:0,60,1165 0/0:104,0:104:99:0,289,3813 0/0:92,0:92:99:0,241,3225 0/0:59,0:59:99:0,153,2037 0/0:39,0:39:99:0,108,1436 0/0:49,0:49:99:0,144,1888 0/0:51,0:51:99:0,129,1692 0/0:44,0:44:99:0,111,1416 0/0:35,0:35:96.29:0,96,1200 0/0:42,0:42:99:0,114,1454 0/0:35,0:35:87.27:0,87,1106 0/1:19,22:41:99:657,0,516 0/0:138,0:139:99:0,337,4353 0/0:49,0:49:99:0,132,1681 0/0:48,0:48:99:0,129,1632 0/0:38,0:38:99:0,114,1430 0/0:70,0:70:99:0,184,2352 0/0:55,0:55:99:0,144,1869 0/0:76,0:76:99:0,196,2375 0/0:39,0:39:99:0,105,1331 0/0:87,0:87:99:0,229,3064 0/0:40,0:40:99:0,111,1490 0/0:56,0:56:99:0,156,2089 0/0:35,0:35:96.29:0,96,1232 0/0:28,0:28:78.24:0,78,983 0/0:37,0:37:96.29:0,96,1222 0/0:36,0:36:99:0,99,1285 0/0:29,0:29:78.24:0,78,973 0/0:37,0:37:96.31:0,96,1244 0/0:66,0:67:99:0,169,2155 0/0:33,0:33:90.27:0,90,1147 0/0:45,0:45:99:0,117,1497 0/0:53,0:53:99:0,144,1809 0/0:42,0:42:99:0,114,1430 0/0:52,0:53:99:0,135,1683 0/0:46,0:46:99:0,120,1560 0/0:45,0:45:99:0,123,1555 0/0:53,0:53:99:0,144,1807 0/0:28,0:28:78.23:0,78,969 0/0:32,0:32:84.27:0,84,1089 12 56233518 . G A 1975.86 . AC=7;AF=0.083;AN=84;BaseQRankSum=-6.551;DP=798;Dels=0.00;FS=1.941;HRun=1;HaplotypeScore=0.3412;InbreedingCoeff=-0.0910;MQ=59.24;MQ0=0;MQRankSum=0.384;QD=12.59;ReadPosRankSum=1.284 GT:AD:DP:GQ:PL 0/0:22,0:22:60.19:0,60,763 0/0:21,0:21:63.20:0,63,790 0/0:13,0:13:36.11:0,36,451 0/0:26,0:26:72.24:0,72,960 0/0:21,0:21:51.17:0,51,707 0/1:6,10:16:99:303,0,193 0/1:5,5:10:99:150,0,176 0/0:14,0:14:39.12:0,39,525 0/1:7,8:15:99:242,0,213 0/1:11,9:20:99:272,0,361 0/0:15,0:15:42.13:0,42,533 0/0:12,0:12:36.11:0,36,443 0/0:23,0:23:66.21:0,66,822 0/0:15,0:15:42.13:0,42,533 0/1:35,24:59:99:684,0,1081 0/0:20,0:20:51.16:0,51,655 0/1:10,9:19:99:260,0,322 0/0:14,0:15:42.13:0,42,525 0/0:30,0:30:84.26:0,84,1061 0/0:28,0:28:75.24:0,75,957 0/0:28,0:28:81.23:0,81,976 0/0:19,0:19:57.17:0,57,686 0/0:19,0:19:54.18:0,54,725 0/0:13,0:13:39.12:0,39,510 0/0:14,0:14:39.12:0,39,491 0/0:13,0:13:36.12:0,36,484 0/0:13,0:13:30.08:0,30,366 0/0:15,0:15:39.12:0,39,495 0/0:17,0:17:48.15:0,48,614 0/0:23,0:23:63.20:0,63,797 0/0:20,0:20:57.18:0,57,733 0/0:24,0:24:66.19:0,66,836 0/0:23,0:23:66.21:0,66,825 0/0:11,0:11:33.10:0,33,412 0/1:11,7:18:99:179,0,325 0/0:17,0:17:48.15:0,48,598 0/0:24,0:24:69.22:0,69,858 0/0:16,0:16:48.15:0,48,602 0/0:12,0:12:36.11:0,36,449 0/0:17,0:17:48.15:0,48,600 0/0:12,0:13:36.11:0,36,443 0/0:15,0:15:45.13:0,45,545 12 56500502 . T TA 6249.61 . AC=10;AF=0.119;AN=84;BaseQRankSum=-21.634;DP=4473;DS;FS=9.357;HRun=12;HaplotypeScore=271.0602;InbreedingCoeff=-0.1351;MQ=58.53;MQ0=2;MQRankSum=2.419;QD=6.63;ReadPosRankSum=-2.775 GT:AD:DP:GQ:PL 0/0:97,1:106:99:0,185,1573 0/0:99,2:113:99:0,202,1693 0/0:95,1:104:99:0,193,1645 0/0:62,4:78:85.28:0,85,1158 0/0:68,1:75:99:0,150,1209 0/0:81,1:89:99:0,188,1478 0/0:81,0:84:99:0,207,1471 0/0:74,1:84:99:0,180,1400 0/0:112,1:128:99:0,190,1849 0/0:93,2:104:99:0,164,1510 0/0:122,3:132:99:0,204,2069 0/0:91,1:102:99:0,164,1401 0/0:102,2:116:99:0,184,1714 0/1:63,27:94:99:584,0,646 0/0:217,2:244:99:0,501,3739 0/0:85,3:92:98:0,98,1287 0/0:106,2:115:99:0,181,1711 0/1:67,41:111:99:930,0,678 0/1:85,43:131:99:916,0,866 0/0:140,1:162:99:0,310,2405 0/0:136,2:142:99:0,282,2319 0/0:73,2:84:99:0,134,1235 0/0:63,3:73:87.65:0,88,1067 0/1:40,13:54:99:246,0,549 0/0:88,0:94:99:0,218,1516 0/1:44,8:55:99:104,0,594 0/0:84,1:88:99:0,167,1423 0/0:108,0:116:99:0,171,1652 0/0:72,2:81:99:0,154,1395 0/0:90,0:94:99:0,203,1414 0/1:52,31:88:99:703,0,707 0/0:132,7:145:99:0,131,1957 0/0:98,3:108:99:0,130,1465 0/0:99,3:107:99:0,148,1667 0/0:102,2:111:99:0,177,1537 0/0:99,2:107:99:0,118,1570 0/1:77,31:110:99:645,0,810 0/1:67,28:101:99:556,0,875 0/0:105,3:122:99:0,209,1892 0/1:55,39:99:99:881,0,586 0/1:56,32:93:99:685,0,575 0/0:104,2:117:99:0,220,1836 12 56532009 . C T 1597.71 . 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C T 1307.29 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.873;DP=4899;DS;Dels=0.00;FS=5.698;HRun=1;HaplotypeScore=5.5294;InbreedingCoeff=-0.0120;MQ=59.35;MQ0=0;MQRankSum=0.039;QD=15.94;ReadPosRankSum=-1.327 GT:AD:DP:GQ:PL 0/0:82,0:82:99:0,229,2506 0/1:34,48:82:99:1354,0,772 0/0:72,1:73:99:0,201,2176 0/0:192,0:192:99:0,569,6642 0/0:188,0:189:99:0,557,6562 0/0:206,0:207:99:0,608,7100 0/0:182,0:183:99:0,511,6055 0/0:198,0:198:99:0,575,6742 0/0:70,0:71:99:0,207,2266 0/0:69,0:69:99:0,199,2181 0/0:74,0:74:99:0,204,2179 0/0:71,0:71:99:0,201,2180 0/0:62,0:62:99:0,168,1845 0/0:78,0:78:99:0,226,2492 0/0:221,0:221:99:0,626,6849 0/0:89,0:89:99:0,244,2649 0/0:82,0:82:99:0,232,2540 0/0:85,0:85:99:0,244,2683 0/0:197,0:197:99:0,547,5918 0/0:180,0:180:99:0,517,5586 0/0:165,0:165:99:0,481,5238 0/0:101,0:101:99:0,295,3195 0/0:200,0:200:99:0,581,6843 0/0:168,0:169:99:0,481,5640 0/0:201,0:201:99:0,584,6810 0/0:187,0:187:99:0,535,6213 0/0:58,0:58:99:0,168,1850 0/0:85,0:85:99:0,238,2588 0/0:60,0:60:99:0,165,1776 0/0:75,0:75:99:0,220,2341 0/0:75,0:75:99:0,226,2480 0/0:177,0:177:99:0,496,5548 0/0:126,0:126:99:0,361,3923 0/0:71,0:71:99:0,214,2309 0/0:73,0:73:99:0,208,2316 0/0:71,0:71:99:0,205,2244 0/0:165,0:167:99:0,460,4927 0/0:68,0:68:99:0,198,2161 0/0:74,0:74:99:0,217,2366 0/0:68,0:68:99:0,195,2111 0/0:61,0:61:99:0,174,1864 0/0:82,0:82:99:0,235,2524 12 56645836 . CGT C 9742.20 . 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T C 123.39 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.918;DP=2613;DS;Dels=0.00;FS=282.656;HRun=2;HaplotypeScore=4.4014;InbreedingCoeff=-0.0244;MQ=57.92;MQ0=0;MQRankSum=8.173;QD=0.79;ReadPosRankSum=-11.561 GT:AD:DP:GQ:PL 0/0:56,2:58:99:0,146,1922 0/0:50,1:51:99:0,141,1697 0/0:47,1:48:99:0,126,1498 0/0:95,10:105:99:0,277,3376 0/0:71,12:83:94.13:0,94,2359 0/0:67,4:71:99:0,193,2397 0/0:66,6:73:99:0,190,2333 0/0:64,5:69:99:0,170,2347 0/0:44,1:46:99:0,126,1507 0/1:25,9:34:89.63:90,0,639 0/0:35,2:37:96.28:0,96,1146 0/0:40,0:40:99:0,108,1305 0/0:33,1:34:93.23:0,93,1075 0/0:42,2:44:85.11:0,85,1380 0/0:147,8:155:99:0,378,4788 0/0:42,1:43:99:0,123,1485 0/0:30,1:31:84.25:0,84,1007 0/0:53,6:59:99:0,132,1573 0/0:99,4:103:99:0,248,3317 0/0:113,8:123:99:0,310,3758 0/1:97,23:122:96.15:96,0,2864 0/0:51,9:60:99:0,111,1711 0/0:99,6:105:99:0,271,3289 0/0:63,8:71:99:0,175,2149 0/0:65,6:71:99:0,181,2239 0/0:42,2:44:99:0,117,1432 0/0:36,4:40:76.76:0,77,1216 0/0:56,1:57:99:0,147,1785 0/0:31,0:31:90.27:0,90,1073 0/0:48,3:51:99:0,138,1660 0/0:40,1:41:99:0,117,1418 0/0:88,5:93:99:0,223,2673 0/0:68,2:70:99:0,193,2318 0/0:38,6:44:42.19:0,42,1238 0/0:37,3:40:99:0,105,1253 0/0:53,0:53:99:0,147,1759 0/0:77,12:89:99:0,161,2457 0/0:46,0:46:99:0,132,1545 0/0:46,0:46:99:0,126,1488 0/0:47,1:48:99:0,135,1641 0/0:39,1:40:99:0,105,1283 0/0:42,2:44:99:0,117,1431 12 56718381 . C T 624.17 . 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T C 3615.05 . AC=4;AF=0.048;AN=84;BaseQRankSum=-11.788;DP=2765;DS;Dels=0.00;FS=0.698;HRun=0;HaplotypeScore=0.9777;InbreedingCoeff=-0.0500;MQ=59.34;MQ0=0;MQRankSum=0.819;QD=12.13;ReadPosRankSum=0.873 GT:AD:DP:GQ:PL 0/0:63,0:63:99:0,181,2156 0/0:72,0:72:99:0,196,2386 0/0:42,0:42:99:0,108,1357 0/0:100,0:100:99:0,283,3475 0/0:72,0:72:99:0,208,2563 0/0:71,0:71:99:0,199,2512 0/0:69,0:69:99:0,202,2520 0/0:98,0:98:99:0,271,3368 0/0:65,0:65:99:0,178,2167 0/0:50,0:50:99:0,141,1692 0/0:56,0:56:99:0,159,1921 0/0:60,0:60:99:0,168,2017 0/0:44,0:44:99:0,126,1557 0/0:62,0:62:99:0,175,2114 0/0:193,0:193:99:0,503,6179 0/0:60,0:60:99:0,172,2065 0/0:55,0:55:99:0,156,1887 0/0:54,0:54:99:0,153,1880 0/1:48,40:88:99:903,0,1367 0/1:34,52:86:99:1440,0,942 0/0:77,0:77:99:0,214,2611 0/0:41,0:41:99:0,111,1336 0/0:99,0:99:99:0,283,3510 0/0:61,0:61:99:0,178,2212 0/0:62,0:62:99:0,184,2238 0/0:68,0:68:99:0,190,2357 0/1:26,23:49:99:537,0,784 0/1:43,32:75:99:735,0,1229 0/0:53,0:53:99:0,156,1884 0/0:42,0:42:99:0,117,1433 0/0:49,0:49:99:0,144,1732 0/0:62,0:62:99:0,171,2095 0/0:35,0:36:96.29:0,96,1163 0/0:54,0:54:99:0,159,1938 0/0:72,0:72:99:0,202,2456 0/0:57,0:57:99:0,156,1875 0/0:75,0:75:99:0,193,2377 0/0:47,0:47:99:0,132,1589 0/0:60,0:60:99:0,175,2113 0/0:57,0:57:99:0,156,1910 0/0:55,0:55:99:0,153,1858 0/0:54,0:54:99:0,147,1823 12 56721305 . G A 880.26 . AC=20;AF=0.238;AN=84;BaseQRankSum=-18.036;DP=2175;Dels=0.00;FS=1025.957;HRun=2;HaplotypeScore=1.2265;InbreedingCoeff=-0.3306;MQ=58.57;MQ0=1;MQRankSum=-0.692;QD=0.87;ReadPosRankSum=-12.569 GT:AD:DP:GQ:PL 0/1:34,11:45:13.03:13,0,866 0/0:35,9:44:24.18:0,24,894 0/0:37,9:46:65.53:0,66,974 0/0:65,28:93:99:0,112,1860 0/0:64,19:83:2.86:0,0,1692 0/0:49,15:64:0.76:0,1,1418 0/1:34,13:47:48.27:48,0,992 0/0:43,16:59:99:0,111,1387 0/0:31,5:36:45.10:0,45,874 0/0:31,9:40:45.07:0,45,738 0/0:33,9:42:6.77:0,7,947 0/1:38,13:51:11.72:12,0,975 0/1:35,7:43:31.96:32,0,815 0/0:42,11:53:6.57:0,7,1055 0/1:85,22:108:29.97:30,0,1978 0/1:24,16:40:99:170,0,552 0/0:28,8:36:46.46:0,46,781 0/1:30,10:40:5.05:5,0,864 0/1:42,22:64:99:161,0,1193 0/0:70,17:88:77.14:0,77,2042 0/1:37,9:46:54.54:55,0,753 0/1:38,11:49:46.48:46,0,1042 0/1:46,25:71:19.15:19,0,1325 0/0:39,12:51:99:0,99,1241 0/1:32,12:44:64.45:64,0,848 0/0:46,18:64:39.41:0,39,1285 0/0:26,7:33:66.16:0,66,794 0/1:32,11:43:5.42:5,0,853 0/1:35,12:47:53.47:53,0,855 0/0:30,3:33:16.35:0,16,815 0/0:28,9:37:44.41:0,44,749 0/0:72,14:86:99:0,113,2117 0/0:38,10:48:42.18:0,42,1094 0/0:30,6:36:19.04:0,19,808 0/1:27,8:35:58.80:59,0,665 0/0:35,9:44:3.80:0,4,934 0/1:45,15:60:77.54:78,0,1039 0/1:43,10:53:6.15:6,0,1027 0/1:43,10:53:19.69:20,0,1078 0/0:31,12:43:45.53:0,46,812 0/1:23,15:38:99:126,0,571 0/1:31,7:38:38.63:39,0,773 12 56742997 . T C 5541.57 . AC=3;AF=0.036;AN=84;BaseQRankSum=15.191;DP=4927;DS;Dels=0.00;FS=4.893;HRun=0;HaplotypeScore=1.9692;InbreedingCoeff=-0.0370;MQ=59.38;MQ0=0;MQRankSum=0.680;QD=16.16;ReadPosRankSum=1.011 GT:AD:DP:GQ:PL 0/0:99,1:100:99:0,268,3304 0/0:96,0:96:99:0,268,3290 0/0:85,0:85:99:0,229,2791 0/0:183,0:183:99:0,494,6213 0/0:153,1:154:99:0,424,5421 0/1:60,61:121:99:1917,0,1836 0/1:48,54:102:99:1844,0,1247 0/1:62,58:120:99:1780,0,1838 0/0:103,0:103:99:0,271,3324 0/0:83,0:83:99:0,226,2764 0/0:98,0:98:99:0,265,3245 0/0:77,0:77:99:0,217,2676 0/0:77,0:77:99:0,217,2655 0/0:96,0:97:99:0,256,3157 0/0:232,0:232:99:0,611,7544 0/0:77,0:78:99:0,220,2679 0/0:94,0:94:99:0,247,3054 0/0:95,0:96:99:0,256,3188 0/0:198,0:199:99:0,515,6442 0/0:200,0:200:99:0,521,6505 0/0:202,0:203:99:0,539,6682 0/0:115,0:115:99:0,325,3981 0/0:193,0:193:99:0,527,6670 0/0:104,0:104:99:0,280,3587 0/0:142,0:143:99:0,379,4885 0/0:111,0:111:99:0,322,4083 0/0:70,0:70:99:0,199,2397 0/0:90,0:90:99:0,238,2956 0/0:73,0:74:99:0,208,2498 0/0:97,0:97:99:0,256,3147 0/0:83,0:83:99:0,226,2785 0/0:157,0:157:99:0,424,5277 0/0:140,0:140:99:0,370,4587 0/0:86,0:86:99:0,241,2944 0/0:109,0:109:99:0,304,3772 0/0:111,0:111:99:0,304,3742 0/0:182,0:182:99:0,472,5901 0/0:91,0:91:99:0,244,3015 0/0:93,0:93:99:0,265,3233 0/0:96,0:96:99:0,268,3305 0/0:96,0:96:99:0,253,3095 0/0:88,0:88:99:0,247,3051 12 56815184 . C T 1952.35 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.308;DP=4401;DS;Dels=0.00;FS=3.183;HRun=0;HaplotypeScore=4.9389;InbreedingCoeff=-0.0244;MQ=58.81;MQ0=0;MQRankSum=0.776;QD=13.85;ReadPosRankSum=-0.553 GT:AD:DP:GQ:PL 0/0:71,0:71:99:0,202,2448 0/0:60,0:60:99:0,177,2074 0/0:83,0:83:99:0,235,2751 0/0:185,0:185:99:0,523,6532 0/0:148,0:148:99:0,415,5363 0/0:142,0:142:99:0,391,4973 0/0:124,0:124:99:0,346,4285 0/0:113,0:113:99:0,331,4113 0/0:76,0:76:99:0,220,2606 0/0:65,0:65:99:0,177,2092 0/0:96,0:96:99:0,256,3115 0/0:61,0:61:99:0,162,1926 0/0:69,0:69:99:0,190,2227 0/0:69,0:69:99:0,202,2403 0/0:249,0:250:99:0,647,7749 0/0:71,0:71:99:0,208,2462 0/0:86,0:86:99:0,241,2805 0/0:54,0:54:99:0,147,1750 0/0:133,0:134:99:0,370,4353 0/0:180,0:180:99:0,478,5649 0/0:125,0:128:99:0,340,4082 0/0:105,0:105:99:0,277,3371 0/0:208,0:208:99:0,581,7371 0/0:118,0:118:99:0,340,4308 0/0:147,0:147:99:0,412,5161 0/0:106,0:106:99:0,295,3679 0/0:65,0:65:99:0,184,2226 0/0:77,1:78:99:0,211,2545 0/0:72,1:73:99:0,211,2531 0/1:31,34:65:99:946,0,880 0/1:39,37:76:99:1069,0,1127 0/0:164,0:164:99:0,433,5222 0/0:130,0:130:99:0,367,4396 0/0:85,0:85:99:0,244,2907 0/0:76,0:76:99:0,217,2534 0/0:97,1:98:99:0,233,3166 0/0:135,0:137:99:0,349,4116 0/0:80,0:81:99:0,223,2680 0/0:82,0:82:99:0,226,2693 0/0:82,0:83:99:0,241,2909 0/0:67,0:67:99:0,196,2324 0/0:91,0:92:99:0,262,3183 12 56817152 . G C 106.64 . AC=2;AF=0.024;AN=84;BaseQRankSum=-20.570;DP=3940;DS;Dels=0.00;FS=781.022;HRun=2;HaplotypeScore=5.5138;InbreedingCoeff=-0.0336;MQ=59.12;MQ0=0;MQRankSum=1.306;QD=0.55;ReadPosRankSum=-16.771 GT:AD:DP:GQ:PL 0/1:48,18:67:92.22:92,0,1272 0/0:57,19:77:56.34:0,56,1664 0/0:62,15:77:92.03:0,92,1951 0/0:126,41:167:99:0,247,4028 0/0:91,26:117:99:0,224,2889 0/0:93,22:115:99:0,183,2679 0/0:83,16:99:94.76:0,95,2371 0/0:96,16:112:99:0,226,3116 0/0:57,18:75:73.44:0,73,1668 0/0:50,13:63:69.06:0,69,1411 0/0:48,17:65:19.83:0,20,1248 0/0:76,3:79:99:0,162,1984 0/0:63,8:72:99:0,146,1738 0/0:47,16:63:73.09:0,73,1427 0/0:174,74:250:99:0,189,4710 0/0:63,11:75:99:0,132,1830 0/0:61,21:82:32.59:0,33,1542 0/0:51,7:58:99:0,129,1560 0/1:87,40:127:76.43:76,0,2450 0/0:125,22:149:99:0,270,3614 0/0:101,28:131:99:0,109,2819 0/0:69,17:86:99:0,144,1932 0/0:116,40:156:99:0,218,3524 0/0:71,16:87:99:0,112,1929 0/0:87,24:111:99:0,150,2589 0/0:76,25:101:99:0,154,2446 0/0:42,16:58:1.91:3,0,1229 0/0:48,11:59:99:0,120,1390 0/0:56,9:65:99:0,147,1746 0/0:52,20:72:40.03:0,40,1399 0/0:45,11:56:58.59:0,59,1283 0/0:139,23:162:99:0,289,3821 0/0:80,25:105:99:0,153,2038 0/0:54,15:69:55.40:0,55,1450 0/0:42,13:55:56.99:0,57,1203 0/0:53,24:78:10.79:0,11,1437 0/0:94,30:124:99:0,127,2751 0/0:83,14:97:83.25:0,83,2231 0/0:56,2:58:99:0,138,1655 0/0:51,15:66:28.02:0,28,1364 0/0:59,14:73:79.17:0,79,1526 0/0:54,17:71:97.05:0,97,1466 12 56817152 . G GC 106.21 . AC=3;AF=0.036;AN=84;BaseQRankSum=7.201;DP=4063;DS;FS=1243.034;HRun=2;HaplotypeScore=311.6156;InbreedingCoeff=-0.0593;MQ=58.91;MQ0=0;MQRankSum=0.458;QD=0.38;ReadPosRankSum=-25.219 GT:AD:DP:GQ:PL 0/1:68,0:68:82.74:83,0,1354 0/0:77,0:76:25.15:0,25,1573 0/0:82,0:82:74.51:0,75,1903 0/0:170,0:170:99:0,244,4035 0/0:117,0:116:99:0,201,2735 0/0:118,0:115:99:0,227,2884 0/0:102,0:102:99:0,176,2549 0/0:115,0:113:99:0,228,2952 0/0:77,0:76:99:0,118,1909 0/0:63,0:63:47.58:0,48,1432 0/0:67,0:67:99:0,102,1531 0/0:69,12:81:30.13:0,30,1895 0/0:73,0:73:99:0,142,2013 0/0:64,0:64:73.92:0,74,1530 0/0:250,0:250:25.97:0,26,4706 0/0:79,0:79:99:0,137,1900 0/1:82,0:82:23.97:24,0,1542 0/0:62,0:62:99:0,114,1588 0/1:132,0:132:82.17:82,0,2600 0/0:149,0:149:99:0,282,3870 0/0:150,0:150:6.65:0,7,2841 0/0:90,0:90:99:0,155,2001 0/0:157,0:157:99:0,182,3453 0/0:90,0:88:99:0,106,2015 0/0:112,0:110:99:0,189,2739 0/0:104,0:102:99:0,175,2551 0/0:61,0:61:6.50:0,6,1207 0/0:73,0:73:10.94:0,11,1298 0/0:67,0:67:99:0,134,1854 0/0:73,0:73:8.80:0,9,1474 0/0:58,0:58:0.90:6,0,1221 0/0:168,0:168:99:0,333,4513 0/0:109,0:109:99:0,119,2329 0/0:70,0:70:42.89:0,43,1584 0/0:55,0:55:99:0,104,1367 0/0:82,0:82:4.52:0,5,1391 0/0:131,1:132:54.58:0,55,2705 0/0:99,0:99:99:0,103,2483 0/0:57,15:72:45.64:0,46,1572 0/0:69,0:69:10.94:0,11,1432 0/0:74,0:74:99:0,100,1689 0/0:70,0:70:52.59:0,53,1503 12 56817480 . G A 1834.35 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.592;DP=1582;Dels=0.00;FS=0.478;HRun=0;HaplotypeScore=0.7992;InbreedingCoeff=-0.0244;MQ=59.31;MQ0=0;MQRankSum=0.357;QD=14.79;ReadPosRankSum=-2.255 GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,99,1199 0/0:40,0:40:99:0,111,1385 0/0:27,0:28:78.25:0,78,997 0/0:63,0:63:99:0,181,2394 0/0:41,0:41:99:0,123,1635 0/0:52,0:52:99:0,147,1961 0/0:33,0:33:96.27:0,96,1213 0/0:50,0:50:99:0,150,1978 0/0:26,0:26:75.23:0,75,954 0/0:34,0:34:90.24:0,90,1099 0/0:34,0:34:90.29:0,90,1152 0/0:31,0:31:90.25:0,90,1080 0/0:25,0:25:69.21:0,69,866 0/0:30,1:31:87.26:0,87,1095 0/0:95,0:95:99:0,262,3239 0/0:26,0:26:75.22:0,75,928 0/0:37,0:37:99:0,102,1272 0/0:22,0:22:63.20:0,63,803 0/1:33,39:72:99:1072,0,852 0/1:25,27:52:99:824,0,755 0/0:36,0:36:99:0,102,1244 0/0:43,0:43:99:0,120,1496 0/0:59,0:59:99:0,175,2304 0/0:29,0:29:84.27:0,84,1103 0/0:39,0:39:99:0,117,1544 0/0:42,0:42:99:0,120,1615 0/0:26,0:26:75.22:0,75,931 0/0:33,0:33:93.28:0,93,1148 0/0:31,0:31:90.28:0,90,1116 0/0:38,0:38:99:0,114,1375 0/0:33,0:33:96.30:0,96,1206 0/0:55,1:56:99:0,156,1975 0/0:20,0:20:60.19:0,60,760 0/0:25,0:25:69.20:0,69,853 0/0:29,0:29:84.24:0,84,1016 0/0:30,0:30:84.26:0,84,1065 0/0:38,0:39:99:0,105,1307 0/0:25,0:25:69.21:0,69,856 0/0:32,0:32:93.28:0,93,1146 0/0:31,0:31:90.27:0,90,1104 0/0:24,0:24:63.19:0,63,789 0/0:36,0:36:96.29:0,96,1214 12 56865338 . A G 12923.25 . AC=22;AF=0.262;AN=84;BaseQRankSum=11.178;DP=1815;Dels=0.00;FS=7.790;HRun=1;HaplotypeScore=0.8826;InbreedingCoeff=-0.2317;MQ=59.32;MQ0=0;MQRankSum=-0.787;QD=14.55;ReadPosRankSum=-0.718 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,117,1415 0/0:42,0:42:99:0,120,1423 0/1:15,14:29:99:407,0,429 0/0:54,0:54:99:0,150,1798 0/1:35,26:61:99:856,0,998 0/0:47,0:47:99:0,132,1664 0/0:63,0:63:99:0,175,2209 0/0:57,0:57:99:0,168,2010 0/1:29,25:55:99:776,0,819 0/1:19,22:41:99:665,0,563 0/1:28,15:43:99:435,0,858 0/0:30,1:31:84.25:0,84,1011 0/0:35,0:35:96.26:0,96,1136 0/0:32,0:32:84.23:0,84,989 0/0:106,1:107:99:0,286,3399 0/0:34,0:34:93.27:0,93,1112 0/1:25,18:43:99:442,0,745 0/1:9,19:28:99:636,0,248 0/1:26,25:51:99:711,0,641 0/1:16,31:47:99:976,0,403 0/1:23,18:42:99:517,0,678 0/0:48,0:48:99:0,123,1503 0/1:43,43:86:99:1360,0,1319 0/0:42,0:42:99:0,123,1524 0/0:48,0:48:99:0,138,1700 0/1:21,22:43:99:656,0,520 0/1:21,8:29:99:215,0,692 1/1:0,40:40:99:1392,111,0 0/1:23,13:36:99:362,0,664 0/0:34,0:34:99:0,102,1180 0/0:29,0:29:81.23:0,81,978 0/1:36,16:52:99:418,0,1045 0/0:31,0:31:90.28:0,90,1107 0/1:19,11:30:99:245,0,613 0/1:11,19:30:99:611,0,311 0/0:49,0:49:99:0,135,1604 0/1:23,13:36:99:305,0,593 0/1:14,14:28:99:432,0,429 0/1:21,17:38:99:506,0,638 0/0:35,0:35:96.29:0,96,1176 0/0:24,0:25:66.18:0,66,764 0/0:43,0:43:99:0,126,1497 12 56865970 . C T 1335.69 . AC=1;AF=0.012;AN=84;BaseQRankSum=-9.944;DP=5553;DS;Dels=0.00;FS=4.713;HRun=0;HaplotypeScore=2.9040;InbreedingCoeff=-0.0120;MQ=59.50;MQ0=0;MQRankSum=-0.324;QD=15.71;ReadPosRankSum=0.772 GT:AD:DP:GQ:PL 0/0:93,0:93:99:0,262,3304 0/0:84,0:84:99:0,235,2949 0/0:99,1:100:99:0,274,3504 0/0:186,0:186:99:0,533,7207 0/0:205,0:205:99:0,587,8052 0/0:177,0:177:99:0,494,6763 0/0:182,0:182:99:0,512,7060 0/0:160,0:162:99:0,451,6205 0/0:94,0:94:99:0,250,3203 0/0:92,0:92:99:0,262,3264 0/1:34,51:85:99:1382,0,981 0/0:97,0:97:99:0,265,3347 0/0:80,0:80:99:0,220,2775 0/0:95,0:96:99:0,271,3426 0/0:243,0:243:99:0,683,8663 0/0:89,0:90:99:0,253,3178 0/0:91,0:92:99:0,259,3255 0/0:107,0:107:99:0,292,3690 0/0:207,0:208:99:0,560,7162 0/0:194,0:194:99:0,521,6690 0/0:200,0:200:99:0,545,6894 0/0:123,0:123:99:0,340,4332 0/0:227,0:227:99:0,650,8966 0/0:162,0:162:99:0,461,6315 0/0:192,0:192:99:0,536,7367 0/0:169,0:169:99:0,458,6295 0/0:78,0:78:99:0,223,2806 0/0:133,0:133:99:0,382,4780 0/0:93,0:93:99:0,265,3352 0/0:108,0:108:99:0,295,3702 0/0:77,0:77:99:0,217,2716 0/0:195,0:196:99:0,518,6708 0/0:142,0:142:99:0,397,4992 0/0:100,0:100:99:0,262,3327 0/0:97,0:97:99:0,277,3545 0/0:103,0:103:99:0,286,3648 0/0:169,0:170:99:0,469,5924 0/0:105,0:105:99:0,292,3704 0/0:125,0:126:99:0,361,4556 0/0:109,0:109:99:0,304,3843 0/0:66,0:66:99:0,187,2354 0/0:110,0:110:99:0,304,3899 12 56956213 . T C 79228.85 . AC=67;AF=0.798;AN=84;BaseQRankSum=12.623;DP=3268;Dels=0.00;FS=2.335;HRun=0;HaplotypeScore=1.2240;InbreedingCoeff=-0.1062;MQ=44.64;MQ0=303;MQRankSum=0.495;QD=24.81;ReadPosRankSum=0.164 GT:AD:DP:GQ:PL 1/1:3,61:64:99:1967,162,0 1/1:1,69:70:99:2299,190,0 0/1:25,37:62:99:1020,0,602 1/1:6,97:103:99:3576,271,0 0/1:49,53:102:99:1606,0,1324 0/1:46,50:96:99:1432,0,1103 0/1:34,43:77:99:1189,0,981 0/0:74,0:74:99:0,181,2222 0/1:31,35:66:99:944,0,705 0/1:43,40:83:99:1003,0,941 0/1:25,25:51:99:641,0,513 1/1:2,58:60:99:1821,150,0 1/1:1,56:57:99:1695,107,0 1/1:8,60:68:99:1895,153,0 1/1:12,225:238:99:7042,566,0 1/1:6,60:66:99:2009,165,0 0/1:34,35:69:99:972,0,731 0/1:31,27:58:99:760,0,728 1/1:6,101:107:99:3306,271,0 1/1:5,90:95:99:2893,235,0 1/1:4,93:97:99:2854,232,0 1/1:3,64:68:99:2041,165,0 0/1:59,47:106:99:1376,0,1491 1/1:1,58:59:99:1916,141,0 1/1:3,66:69:99:2117,160,0 0/1:34,35:69:99:1093,0,771 0/1:24,19:43:99:579,0,567 0/1:36,35:71:99:1003,0,771 1/1:5,49:54:99:1518,126,0 1/1:5,61:67:99:1948,156,0 1/1:0,72:72:99:2184,175,0 1/1:3,88:92:99:2688,220,0 1/1:4,55:59:99:1814,147,0 1/1:3,62:65:99:2084,171,0 1/1:1,53:54:99:1723,141,0 1/1:2,78:80:99:2399,166,0 0/1:45,44:90:99:1154,0,985 0/1:38,44:82:99:1010,0,870 1/1:4,72:76:99:2444,202,0 1/1:4,72:76:99:2516,208,0 1/1:5,75:80:99:2479,205,0 1/1:2,71:73:99:2219,181,0 12 56982751 . C T 1203.74 . AC=1;AF=0.012;AN=84;BaseQRankSum=5.254;DP=4349;DS;Dels=0.00;FS=0.702;HRun=0;HaplotypeScore=3.3255;InbreedingCoeff=-0.0120;MQ=58.67;MQ0=0;MQRankSum=-0.021;QD=15.24;ReadPosRankSum=-0.201 GT:AD:DP:GQ:PL 0/1:36,43:79:99:1250,0,856 0/0:73,0:73:99:0,202,2215 0/0:85,0:85:99:0,210,2355 0/0:188,0:188:99:0,496,5961 0/0:177,0:177:99:0,466,5597 0/0:130,0:130:99:0,352,4206 0/0:129,0:129:99:0,358,4282 0/0:140,0:140:99:0,364,4380 0/0:73,0:73:99:0,208,2283 0/0:73,0:73:99:0,204,2194 0/0:76,0:76:99:0,205,2271 0/0:82,0:82:99:0,220,2387 0/0:71,0:71:99:0,192,2152 0/0:62,0:62:99:0,165,1754 0/0:203,0:204:99:0,541,5908 0/0:78,0:78:99:0,223,2440 0/0:74,0:74:99:0,214,2287 0/0:74,0:74:99:0,208,2268 0/0:140,0:140:99:0,352,3855 0/0:157,0:157:99:0,421,4728 0/0:118,0:119:99:0,316,3428 0/0:109,0:109:99:0,301,3288 0/0:187,0:187:99:0,514,6164 0/0:121,0:121:99:0,331,3953 0/0:129,0:129:99:0,352,4226 0/0:128,0:128:99:0,346,4135 0/0:55,0:55:99:0,153,1656 0/0:75,0:75:99:0,204,2186 0/0:72,0:72:99:0,201,2184 0/0:91,0:91:99:0,259,2824 0/0:68,0:68:99:0,189,2029 0/0:153,0:153:99:0,397,4439 0/0:89,0:89:99:0,241,2636 0/0:93,0:93:99:0,259,2837 0/0:80,0:80:99:0,238,2517 0/0:82,0:82:99:0,223,2424 0/0:125,0:126:99:0,325,3547 0/0:99,1:100:99:0,230,2858 0/0:73,0:73:99:0,201,2210 0/0:85,0:85:99:0,232,2505 0/0:72,0:72:99:0,204,2187 0/0:77,0:77:99:0,217,2364 12 56994170 . C T 1597.43 . 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C G 770.63 . 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G A 10.95 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.216;DP=521;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4722;InbreedingCoeff=-0.0153;MQ=58.38;MQ0=0;MQRankSum=0.274;QD=2.19;ReadPosRankSum=0.783 GT:AD:DP:GQ:PL 0/0:10,0:11:30.09:0,30,370 0/0:13,0:13:39.12:0,39,488 0/0:12,0:12:36.11:0,36,455 0/0:8,0:8:24.07:0,24,305 0/0:4,0:4:12.04:0,12,164 0/0:5,0:5:15.05:0,15,192 0/0:5,0:5:15.05:0,15,207 0/0:8,0:8:24.08:0,24,322 0/0:8,0:8:24.08:0,24,306 0/0:11,0:11:33.10:0,33,414 0/0:8,0:8:24.07:0,24,294 0/0:10,0:10:30.09:0,30,369 0/0:10,0:10:30.09:0,30,370 0/0:11,0:12:33.10:0,33,412 0/0:48,0:48:99:0,141,1769 0/0:7,0:7:21.07:0,21,258 0/0:6,0:6:15.04:0,15,180 0/0:11,0:11:33.10:0,33,413 0/0:18,0:20:51.15:0,51,620 0/0:36,0:37:99:0,102,1278 0/0:24,0:24:72.22:0,72,884 0/0:20,0:20:60.19:0,60,746 0/1:3,2:5:56.77:57,0,106 0/0:5,0:5:15.05:0,15,192 0/0:7,0:7:21.06:0,21,272 0/0:7,0:7:21.07:0,21,291 0/0:7,0:7:21.06:0,21,260 0/0:8,0:8:24.08:0,24,298 0/0:12,0:12:36.11:0,36,449 0/0:18,0:20:54.16:0,54,661 0/0:8,0:8:21.07:0,21,270 0/0:17,0:19:45.14:0,45,577 0/0:15,0:15:45.14:0,45,567 0/0:11,0:12:33.10:0,33,408 0/0:7,0:8:21.07:0,21,262 0/0:8,0:8:24.08:0,24,302 0/0:27,0:27:78.23:0,78,949 0/0:10,0:10:30.09:0,30,358 0/0:9,0:9:24.08:0,24,305 0/0:10,0:10:30.09:0,30,363 0/0:11,0:11:33.10:0,33,411 0/0:14,0:15:42.12:0,42,504 12 57003964 . T A 1991.02 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.611;DP=5890;DS;Dels=0.00;FS=0.882;HRun=0;HaplotypeScore=3.2787;InbreedingCoeff=-0.0120;MQ=59.54;MQ0=0;MQRankSum=1.117;QD=14.12;ReadPosRankSum=1.224 GT:AD:DP:GQ:PL 0/0:117,0:118:99:0,307,3842 0/0:118,0:118:99:0,301,3823 0/0:105,0:105:99:0,280,3458 0/0:221,0:221:99:0,578,7391 0/0:215,0:215:99:0,545,7027 0/0:188,0:188:99:0,469,6161 0/1:64,77:141:99:2037,0,1729 0/0:181,0:181:99:0,460,5961 0/0:113,0:114:99:0,313,3857 0/0:110,0:110:99:0,298,3739 0/0:126,0:127:99:0,331,4142 0/0:107,0:107:99:0,292,3600 0/0:91,0:91:99:0,235,2935 0/0:120,0:120:99:0,337,4177 0/0:229,0:230:99:0,614,7557 0/0:110,0:110:99:0,277,3523 0/0:122,0:122:99:0,331,4114 0/0:114,0:115:99:0,313,3863 0/0:227,0:227:99:0,578,7212 0/0:238,0:238:99:0,593,7551 0/0:211,0:211:99:0,518,6612 0/0:145,0:145:99:0,367,4640 0/0:232,0:232:99:0,575,7431 0/0:127,0:127:99:0,310,4001 0/0:157,0:157:99:0,412,5281 0/0:119,0:119:99:0,301,3824 0/0:73,0:73:99:0,193,2404 0/0:128,0:128:99:0,346,4315 0/0:88,0:90:99:0,241,2993 0/0:100,0:100:99:0,262,3227 0/0:109,0:109:99:0,301,3757 0/0:220,0:220:99:0,536,6884 0/0:131,0:131:99:0,328,4119 0/0:107,0:107:99:0,289,3598 0/0:113,0:113:99:0,298,3775 0/0:117,0:117:99:0,313,3925 0/0:191,0:192:99:0,481,6104 0/0:118,0:118:99:0,319,3901 0/0:86,0:86:99:0,235,2945 0/0:106,0:106:99:0,277,3469 0/0:91,0:91:99:0,232,2943 0/0:120,0:120:99:0,322,4020 12 57037476 . T C 475.39 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.729;DP=2339;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9304;InbreedingCoeff=-0.0120;MQ=59.46;MQ0=0;MQRankSum=0.767;QD=12.19;ReadPosRankSum=-0.021 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,105,1292 0/0:55,0:55:99:0,150,1829 0/0:46,0:46:99:0,123,1492 0/0:72,0:72:99:0,202,2455 0/0:74,0:74:99:0,208,2605 0/0:70,0:70:99:0,184,2362 0/0:51,0:51:99:0,135,1714 0/0:74,0:74:99:0,214,2615 0/0:49,0:49:99:0,129,1578 0/0:48,0:48:99:0,135,1619 0/0:56,0:56:99:0,150,1833 0/0:50,0:51:99:0,141,1694 0/0:35,0:35:99:0,102,1224 0/0:45,0:45:99:0,132,1612 0/0:170,0:170:99:0,427,5309 0/0:56,0:56:99:0,168,1995 0/0:50,0:50:99:0,138,1685 0/0:50,0:50:99:0,147,1777 0/0:84,0:84:99:0,235,2837 0/0:77,1:78:99:0,202,2518 0/0:68,1:69:99:0,134,2052 0/0:40,0:40:99:0,114,1385 0/0:64,0:64:99:0,181,2241 0/0:47,0:47:99:0,129,1642 0/0:59,0:59:99:0,160,2021 0/0:60,0:60:99:0,166,2054 0/0:28,0:28:84.26:0,84,1027 0/1:21,18:39:99:522,0,615 0/0:41,0:41:99:0,114,1392 0/0:47,0:47:99:0,126,1535 0/0:38,0:38:99:0,99,1224 0/0:62,0:62:99:0,166,2055 0/0:46,0:46:99:0,126,1538 0/0:37,0:37:99:0,108,1308 0/0:57,0:57:99:0,162,1983 0/0:45,0:45:99:0,123,1526 0/0:62,0:63:99:0,165,2019 0/0:40,0:40:99:0,102,1283 0/0:64,0:64:99:0,181,2182 0/0:48,0:48:99:0,135,1652 0/0:40,0:40:99:0,114,1390 0/0:51,0:51:99:0,135,1673 12 57106660 . A T 112263.47 . AC=55;AF=0.655;AN=84;BaseQRankSum=-6.027;DP=5601;DS;Dels=0.00;FS=4.356;HRun=0;HaplotypeScore=1.9035;InbreedingCoeff=-0.1060;MQ=56.85;MQ0=12;MQRankSum=3.547;QD=22.35;ReadPosRankSum=0.087 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3748,310,0 0/1:66,68:134:99:1895,0,1869 0/1:56,54:110:99:1498,0,1571 1/1:0,186:186:99:6069,490,0 1/1:0,175:175:99:6001,484,0 0/1:70,85:155:99:2535,0,2108 0/1:79,82:161:99:2393,0,2249 1/1:1,151:152:99:5141,378,0 1/1:0,123:123:99:3977,328,0 0/1:58,51:109:99:1298,0,1711 1/1:0,110:110:99:3652,307,0 0/1:67,55:122:99:1467,0,1900 1/1:0,93:93:99:3157,262,0 0/1:72,68:140:99:1891,0,1958 1/1:0,247:247:99:8205,683,0 1/1:0,97:97:99:3295,268,0 1/1:0,120:120:99:3899,328,0 0/0:123,1:124:99:0,315,4212 0/0:166,0:166:99:0,454,5613 0/1:94,84:179:99:2321,0,2620 0/1:74,94:168:99:2542,0,2146 1/1:2,88:90:99:2913,202,0 0/1:121,91:212:99:2547,0,3361 1/1:0,144:144:99:5023,406,0 0/1:96,70:166:99:1918,0,2852 1/1:0,143:143:99:4871,394,0 0/1:47,41:88:99:1171,0,1374 1/1:1,116:117:99:3883,316,0 0/1:51,43:94:99:1225,0,1410 0/1:60,53:113:99:1412,0,1691 0/1:50,55:105:99:1597,0,1503 0/0:152,0:152:99:0,400,5027 1/1:0,93:94:99:2997,250,0 0/0:137,0:137:99:0,370,4630 0/1:67,54:121:99:1463,0,2022 0/1:72,72:144:99:1997,0,2049 1/1:0,134:134:99:4503,373,0 0/1:62,51:114:99:1418,0,1699 1/1:0,126:127:99:4256,358,0 0/1:61,49:110:99:1268,0,1809 0/1:60,44:104:99:1234,0,1719 0/1:52,56:108:99:1581,0,1509 12 57108203 . A G 46045.61 . AC=48;AF=0.571;AN=84;BaseQRankSum=-4.944;DP=2816;Dels=0.00;FS=10.498;HRun=0;HaplotypeScore=1.0533;InbreedingCoeff=-0.1667;MQ=59.22;MQ0=3;MQRankSum=-0.780;QD=18.91;ReadPosRankSum=-1.565 GT:AD:DP:GQ:PL 0/1:22,23:45:99:582,0,602 0/0:61,1:62:99:0,141,1980 0/1:31,23:54:99:616,0,807 0/1:74,50:124:99:1270,0,2104 0/1:58,48:106:99:1359,0,1727 0/1:55,51:106:99:1471,0,1589 0/0:101,0:101:99:0,265,3330 0/1:53,50:103:99:1573,0,1447 1/1:1,49:50:99:1601,132,0 0/1:29,23:52:99:641,0,771 1/1:0,48:48:99:1563,135,0 0/1:32,38:70:99:1016,0,845 0/1:28,21:49:99:458,0,799 0/1:34,27:61:99:724,0,917 1/1:0,175:175:99:5395,466,0 1/1:0,43:43:99:1421,120,0 1/1:0,49:49:99:1567,132,0 0/0:48,1:49:99:0,106,1621 0/0:55,0:55:99:0,135,1649 0/1:38,41:79:99:946,0,1080 0/1:27,28:55:99:650,0,678 1/1:2,33:35:42.44:920,42,0 0/1:78,48:126:99:1319,0,2168 1/1:1,99:100:99:3351,265,0 0/1:46,49:95:99:1410,0,1279 1/1:0,93:93:99:3100,247,0 0/1:15,18:33:99:534,0,397 1/1:0,48:48:99:1464,126,0 0/1:19,21:40:99:622,0,433 0/1:32,33:65:99:864,0,881 0/1:31,21:52:99:537,0,887 0/0:61,0:61:99:0,147,1862 1/1:0,51:52:99:1545,126,0 0/0:53,0:53:99:0,141,1766 0/1:18,18:36:99:511,0,543 0/1:23,25:48:99:728,0,617 1/1:0,59:59:99:1829,156,0 0/1:29,34:63:99:976,0,804 1/1:0,52:52:99:1615,135,0 0/1:37,25:63:99:573,0,1131 0/1:29,23:52:99:636,0,800 0/1:29,25:54:99:662,0,806 12 57133140 . T G 13686.68 . AC=49;AF=0.583;AN=84;BaseQRankSum=19.522;DP=808;Dels=0.00;FS=1.186;HRun=0;HaplotypeScore=0.3347;InbreedingCoeff=-0.2119;MQ=59.17;MQ0=0;MQRankSum=-1.828;QD=20.13;ReadPosRankSum=-0.380 GT:AD:DP:GQ:PL 0/1:6,6:12:99:200,0,131 0/0:15,0:15:42.12:0,42,486 0/1:8,11:19:99:304,0,234 0/1:8,9:17:99:251,0,203 0/1:10,13:23:99:364,0,292 0/1:6,6:12:99:180,0,162 0/1:10,1:12:5.47:5,0,333 0/1:5,7:12:99:224,0,123 1/1:0,17:17:51.15:639,51,0 0/1:17,9:26:99:243,0,457 1/1:0,14:14:39.12:493,39,0 0/1:9,7:16:99:214,0,272 0/1:6,15:21:99:417,0,139 0/1:14,5:19:99:142,0,421 1/1:2,57:59:99:1822,100,0 1/1:0,9:9:27.07:322,27,0 1/1:0,8:8:24.08:310,24,0 0/0:22,0:22:51.16:0,51,648 0/0:45,0:45:99:0,117,1433 0/1:15,7:22:99:199,0,422 0/1:12,13:25:99:373,0,337 1/1:0,16:16:45.14:574,45,0 0/1:10,5:15:99:158,0,315 1/1:0,15:15:36.12:509,36,0 0/1:9,7:16:99:237,0,255 1/1:0,11:11:27.09:376,27,0 0/1:4,7:11:99:203,0,113 1/1:0,15:15:39.13:509,39,0 0/1:7,8:15:99:225,0,177 0/1:14,5:19:99:109,0,327 0/1:5,3:8:86.51:87,0,160 0/0:26,0:26:60.18:0,60,745 1/1:0,21:21:54.17:706,54,0 0/0:20,0:20:57.17:0,57,687 0/1:12,7:19:99:180,0,367 0/1:16,12:28:99:314,0,466 1/1:0,31:31:87.28:1116,87,0 0/1:9,8:17:99:222,0,251 1/1:0,16:16:42.13:538,42,0 0/1:8,12:20:99:313,0,236 0/1:11,6:17:99:171,0,320 0/1:11,16:27:99:439,0,270 12 57146069 . T G 1293.80 . AC=12;AF=0.143;AN=84;BaseQRankSum=4.138;DP=490;Dels=0.00;FS=0.939;HRun=4;HaplotypeScore=0.4135;InbreedingCoeff=0.1528;MQ=59.24;MQ0=0;MQRankSum=-0.575;QD=14.22;ReadPosRankSum=0.325 GT:AD:DP:GQ:PL 0/0:11,0:11:30.09:0,30,367 0/0:15,0:15:36.08:0,36,429 0/0:9,0:9:27.08:0,27,312 0/0:11,0:11:30.09:0,30,367 0/1:8,1:9:15.94:16,0,225 0/1:3,2:5:60.51:61,0,100 0/0:3,0:3:9.03:0,9,113 0/1:7,3:10:57.69:58,0,203 0/0:13,0:13:36.08:0,36,408 0/0:16,0:16:48.14:0,48,560 0/0:6,0:6:18.04:0,18,192 0/0:9,0:9:24.07:0,24,292 0/0:7,0:7:21.06:0,21,250 0/0:14,0:14:42.12:0,42,491 0/0:44,1:45:99:0,126,1453 0/0:8,0:8:24.06:0,24,274 0/0:5,0:5:15.05:0,15,183 0/0:9,0:9:24.07:0,24,283 0/0:21,0:21:57.14:0,57,682 0/0:22,1:23:57.15:0,57,676 0/0:14,0:14:36.11:0,36,429 0/0:21,1:22:57.17:0,57,683 0/0:11,0:11:33.10:0,33,396 0/1:0,2:2:0.97:78,6,0 0/1:4,3:7:97.97:98,0,126 0/1:2,6:8:23.53:150,0,24 0/0:9,0:9:24.07:0,24,292 0/1:5,4:9:99:118,0,129 0/0:6,0:6:15.04:0,15,163 0/0:13,0:13:39.11:0,39,455 0/0:11,0:11:30.07:0,30,364 0/0:20,0:20:57.16:0,57,663 0/0:12,0:12:36.08:0,36,409 0/0:10,0:10:27.08:0,27,337 0/0:8,0:8:21.07:0,21,270 0/0:12,0:12:33.10:0,33,392 1/1:0,13:13:39.10:452,39,0 0/1:2,7:9:12.92:224,0,13 0/1:6,6:12:99:179,0,183 0/0:14,0:14:42.13:0,42,512 0/0:11,1:12:30.08:0,30,350 0/1:6,1:7:16.73:17,0,201 12 57457959 . T C 2336.95 . AC=4;AF=0.048;AN=84;BaseQRankSum=-8.356;DP=2164;Dels=0.00;FS=3.002;HRun=0;HaplotypeScore=0.6904;InbreedingCoeff=-0.0500;MQ=59.41;MQ0=0;MQRankSum=0.799;QD=12.56;ReadPosRankSum=0.662 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,123,1508 0/0:44,0:44:99:0,114,1417 0/0:50,0:50:99:0,120,1520 0/0:63,0:63:99:0,160,2032 0/0:58,0:58:99:0,153,1961 0/0:35,0:35:87.28:0,87,1151 0/0:50,0:50:99:0,120,1552 0/0:42,0:42:99:0,108,1382 0/0:47,0:47:99:0,135,1609 0/0:43,0:43:99:0,114,1406 0/0:44,0:44:99:0,117,1460 0/1:28,22:50:99:586,0,772 0/0:50,0:50:99:0,132,1636 0/1:21,27:48:99:732,0,566 0/0:180,0:180:99:0,448,5587 0/0:27,0:27:75.23:0,75,920 0/0:50,0:50:99:0,123,1548 0/0:41,0:41:99:0,117,1449 0/0:59,0:59:99:0,144,1816 0/0:63,0:63:99:0,159,1969 0/0:67,0:67:99:0,162,2028 0/0:40,0:40:99:0,108,1343 0/0:80,0:80:99:0,208,2624 0/0:48,0:48:99:0,129,1628 0/0:41,0:41:99:0,99,1304 0/0:45,0:45:99:0,111,1426 0/0:31,0:31:84.25:0,84,1030 0/0:46,0:46:99:0,123,1519 0/0:39,0:39:99:0,105,1272 0/1:22,24:46:99:613,0,635 0/0:51,0:51:99:0,147,1822 0/0:65,0:65:99:0,166,2088 0/1:23,19:42:99:492,0,614 0/0:60,0:60:99:0,162,2002 0/0:41,0:41:99:0,108,1333 0/0:48,0:48:99:0,135,1643 0/0:54,0:54:99:0,144,1785 0/0:47,0:47:99:0,120,1510 0/0:46,0:46:99:0,132,1621 0/0:42,0:42:99:0,117,1435 0/0:42,1:43:84.86:0,85,1378 0/0:53,0:53:99:0,144,1784 12 57522754 . A C 11.81 . AC=5;AF=0.096;AN=52;BaseQRankSum=-3.206;DP=79;Dels=0.00;FS=36.215;HRun=4;HaplotypeScore=0.0000;InbreedingCoeff=-0.2180;MQ=57.93;MQ0=0;MQRankSum=-0.571;QD=0.66;ReadPosRankSum=-2.269 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:6.02:0,6,73 0/0:1,1:2:3.01:0,3,37 ./. ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,34 0/0:2,0:2:6.02:0,6,73 ./. 0/0:1,0:1:3.01:0,3,33 0/0:2,2:4:6.02:0,6,71 ./. 0/1:3,4:7:19.52:20,0,95 0/1:1,1:2:24.57:25,0,31 0/0:1,0:1:3.01:0,3,38 0/0:2,1:3:6.02:0,6,73 0/1:1,1:2:1.76:0,3,29 0/0:4,1:5:12.03:0,12,135 0/0:5,1:6:15.04:0,15,169 0/0:2,1:3:6.02:0,6,73 ./. ./. 0/0:1,0:1:3.01:0,3,38 ./. 0/0:6,0:6:18.05:0,18,213 0/0:1,1:2:3.01:0,3,38 0/0:2,1:3:6.02:0,6,72 0/0:1,1:2:3.01:0,3,35 0/1:2,2:4:17.66:18,0,63 0/0:2,0:2:6:0,6,59 ./. 0/0:1,0:1:3.01:0,3,38 ./. ./. ./. 0/0:1,0:1:3.01:0,3,33 ./. 0/1:2,1:3:20.60:21,0,61 ./. 0/0:2,0:2:6.02:0,6,70 12 57578673 . G A 2617.37 . AC=2;AF=0.024;AN=84;BaseQRankSum=9.432;DP=2564;Dels=0.00;FS=8.885;HRun=1;HaplotypeScore=1.1483;InbreedingCoeff=-0.0244;MQ=59.43;MQ0=0;MQRankSum=-0.012;QD=12.89;ReadPosRankSum=3.879 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,132,1438 0/0:46,0:46:99:0,129,1371 0/0:31,0:31:84.18:0,84,884 0/1:57,48:105:99:1395,0,1668 0/0:95,0:95:99:0,271,3219 0/0:76,0:76:99:0,217,2501 0/0:89,0:89:99:0,259,2943 0/0:90,0:90:99:0,250,2952 0/0:45,0:45:99:0,129,1388 0/0:33,0:33:96.24:0,96,1047 0/0:47,0:47:99:0,138,1496 0/0:40,0:40:99:0,114,1254 0/0:36,0:36:99:0,108,1172 0/0:39,0:39:99:0,114,1216 0/0:182,0:183:99:0,493,5377 0/0:47,0:47:99:0,138,1520 0/0:51,0:51:99:0,147,1592 0/0:46,0:46:99:0,132,1468 0/0:81,0:81:99:0,214,2330 0/0:101,0:101:99:0,274,3106 0/0:84,0:84:99:0,232,2539 0/0:47,0:47:99:0,135,1488 0/1:55,43:98:99:1285,0,1587 0/0:77,0:77:99:0,220,2535 0/0:84,0:84:99:0,235,2791 0/0:69,0:69:99:0,196,2282 0/0:31,0:31:90.18:0,90,940 0/0:47,0:47:99:0,132,1441 0/0:35,0:36:96.22:0,96,1037 0/0:46,0:46:99:0,132,1464 0/0:50,0:51:99:0,141,1571 0/0:71,0:71:99:0,202,2234 0/0:54,0:54:99:0,150,1634 0/0:54,0:54:99:0,150,1596 0/0:48,0:48:99:0,135,1461 0/0:48,0:48:99:0,135,1476 0/0:83,0:84:99:0,226,2484 0/0:51,0:51:99:0,147,1600 0/0:41,0:41:99:0,123,1317 0/0:47,0:47:99:0,132,1400 0/0:35,0:35:99:0,102,1108 0/0:36,0:36:96.21:0,96,1059 12 57599365 . G C 731.91 . AC=1;AF=0.012;AN=84;BaseQRankSum=5.349;DP=2527;Dels=0.00;FS=1.658;HRun=1;HaplotypeScore=1.9286;InbreedingCoeff=-0.0120;MQ=59.26;MQ0=0;MQRankSum=-0.387;QD=12.41;ReadPosRankSum=0.564 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,159,1986 0/0:57,0:57:99:0,172,2111 0/0:46,0:46:99:0,117,1481 0/0:117,0:117:99:0,313,3966 0/0:77,0:77:99:0,214,2808 0/0:74,0:74:99:0,205,2663 0/0:53,0:53:99:0,138,1817 0/0:71,0:71:99:0,205,2610 0/0:46,0:46:99:0,120,1489 0/0:43,0:43:99:0,120,1473 0/0:43,0:44:99:0,120,1478 0/0:37,0:37:96.30:0,96,1223 0/0:30,0:30:75.21:0,75,932 0/0:53,0:54:99:0,138,1729 0/0:157,0:157:99:0,412,5049 0/0:50,0:50:99:0,135,1611 0/0:44,0:46:99:0,120,1506 0/0:33,0:33:84.23:0,84,1038 0/0:92,0:92:99:0,256,3060 0/0:100,0:100:99:0,277,3457 0/0:75,0:75:99:0,187,2341 0/0:64,0:64:99:0,184,2263 0/0:101,0:102:99:0,271,3506 0/0:42,0:42:99:0,114,1464 0/0:61,0:61:99:0,165,2082 0/1:35,24:59:99:778,0,1130 0/0:42,0:42:99:0,111,1376 0/0:39,0:39:99:0,111,1350 0/0:44,0:44:99:0,120,1447 0/0:35,0:35:99:0,105,1265 0/0:44,0:45:99:0,123,1450 0/0:90,0:90:99:0,238,2935 0/0:65,0:66:99:0,180,2168 0/0:37,0:37:99:0,105,1243 0/0:38,0:38:99:0,102,1246 0/0:52,0:53:99:0,138,1714 0/0:73,1:75:99:0,193,2302 0/0:59,0:59:99:0,156,1942 0/0:50,1:51:99:0,135,1585 0/0:56,0:56:99:0,153,1882 0/0:45,0:45:99:0,117,1465 0/0:63,0:63:99:0,177,2159 12 57610762 . C G 23.98 . AC=4;AF=0.049;AN=82;BaseQRankSum=-6.312;DP=390;Dels=0.00;FS=55.624;HRun=1;HaplotypeScore=0.3131;InbreedingCoeff=-0.1055;MQ=57.93;MQ0=0;MQRankSum=0.225;QD=0.65;ReadPosRankSum=-3.920 GT:AD:DP:GQ:PL 0/1:7,4:11:11.44:11,0,191 0/0:3,1:4:6.02:0,6,77 0/0:4,0:4:9.03:0,9,113 0/0:5,6:11:12.04:0,12,159 0/0:10,5:15:0.47:9,0,238 0/0:8,3:11:21.06:0,21,271 0/0:5,3:8:12.03:0,12,152 0/0:8,2:10:15.05:0,15,192 0/0:5,1:6:12.04:0,12,151 0/0:6,2:8:8.89:0,9,80 0/0:4,1:5:3.01:0,3,40 0/0:6,0:6:12.04:0,12,149 0/0:11,5:16:24.08:0,24,308 0/0:6,1:7:15.05:0,15,190 0/0:17,10:27:2.53:0,3,416 0/1:8,5:13:15.38:15,0,162 0/0:6,0:6:9.03:0,9,107 0/0:2,2:4:3.01:0,3,40 0/0:7,1:8:21.06:0,21,257 0/0:10,3:13:24.07:0,24,283 0/1:1,2:4:23.48:55,0,23 0/0:6,2:8:18.05:0,18,223 0/0:17,11:28:36.12:0,36,480 0/0:9,1:10:15.05:0,15,193 0/0:6,5:11:15.04:0,15,194 0/1:6,3:9:19.31:19,0,141 0/0:5,2:7:8.62:0,9,84 0/0:5,1:6:12.03:0,12,140 0/0:4,2:6:12.04:0,12,148 0/0:5,0:5:6.02:0,6,74 0/0:4,0:4:9.03:0,9,110 0/0:14,2:16:24.04:0,24,283 0/0:13,2:15:27.08:0,27,325 0/0:3,1:4:9.03:0,9,112 ./. 0/0:13,1:14:21.07:0,21,266 0/0:12,3:15:30.08:0,30,357 0/0:10,3:13:26.45:0,26,314 0/0:4,1:5:9.03:0,9,114 0/0:2,1:4:6.02:0,6,76 0/0:6,0:6:12.04:0,12,148 0/0:4,0:4:9.02:0,9,102 12 57626582 . G A 1870.44 . AC=2;AF=0.024;AN=84;BaseQRankSum=7.267;DP=2171;Dels=0.00;FS=1.039;HRun=0;HaplotypeScore=2.1546;InbreedingCoeff=-0.0244;MQ=59.08;MQ0=0;MQRankSum=-0.321;QD=13.65;ReadPosRankSum=0.186 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,117,1282 0/0:46,0:46:99:0,123,1406 0/0:32,0:32:90.25:0,90,1048 0/0:99,0:99:99:0,268,3116 0/0:93,0:94:99:0,277,3278 0/0:76,0:76:99:0,211,2513 0/0:60,0:60:99:0,165,1964 0/0:63,0:63:99:0,181,2131 0/0:42,0:42:99:0,108,1220 0/0:36,0:36:96.26:0,96,1095 0/0:25,0:25:72.16:0,72,776 0/0:30,0:30:90.24:0,90,1002 0/0:31,0:31:81.21:0,81,915 0/0:35,0:35:99:0,102,1120 0/0:140,0:140:99:0,382,4210 0/0:35,0:36:99:0,99,1127 0/0:43,0:43:99:0,120,1281 0/0:30,0:30:84.21:0,84,937 0/1:29,25:54:99:697,0,750 0/1:38,45:83:99:1235,0,846 0/0:53,0:54:99:0,138,1496 0/0:57,0:57:99:0,147,1681 0/0:104,0:104:99:0,301,3524 0/0:45,0:45:99:0,126,1533 0/0:79,0:79:99:0,217,2653 0/0:57,0:57:99:0,159,1884 0/0:24,0:24:63.18:0,63,727 0/0:44,0:44:99:0,111,1263 0/0:36,0:36:99:0,99,1132 0/0:27,0:27:75.20:0,75,854 0/0:38,1:39:88.60:0,89,1232 0/0:94,0:94:99:0,238,2819 0/0:39,0:39:99:0,99,1148 0/0:38,0:38:99:0,108,1213 0/0:38,0:38:99:0,99,1091 0/0:46,0:46:99:0,117,1346 0/0:56,0:56:99:0,147,1646 0/0:34,0:34:93.24:0,93,1042 0/0:43,0:43:99:0,114,1302 0/0:48,0:48:99:0,135,1495 0/0:29,0:29:87.22:0,87,949 0/0:41,0:41:99:0,120,1334 12 57630849 . CCAAGACTGGCT C 488.49 . 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T C 3833.11 . 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G A 4363.24 . 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G A 56383.15 . AC=58;AF=0.690;AN=84;BaseQRankSum=-20.182;DP=2425;Dels=0.00;FS=10.607;HRun=1;HaplotypeScore=1.3955;InbreedingCoeff=0.2202;MQ=59.34;MQ0=0;MQRankSum=1.146;QD=26.67;ReadPosRankSum=-1.526 GT:AD:DP:GQ:PL 0/1:21,19:40:99:587,0,649 1/1:0,50:50:99:1791,144,0 1/1:0,45:45:99:1599,129,0 1/1:0,66:66:99:2388,190,0 1/1:0,76:77:99:2726,214,0 0/0:51,0:51:99:0,150,2023 0/0:51,0:51:99:0,138,1875 0/0:70,1:71:99:0,165,2567 0/1:21,31:52:99:962,0,652 0/1:31,24:55:99:692,0,1015 1/1:0,53:53:99:1889,150,0 1/1:0,42:42:99:1530,123,0 1/1:0,31:31:93.29:1141,93,0 1/1:0,38:38:99:1396,111,0 0/1:96,83:179:99:2402,0,2840 1/1:0,49:49:99:1787,147,0 0/1:22,34:56:99:1038,0,687 0/1:26,23:49:99:730,0,775 1/1:0,88:88:99:3121,250,0 1/1:0,102:102:99:3572,286,0 0/1:40,45:85:99:1343,0,1170 0/1:34,19:53:99:489,0,1094 1/1:0,89:89:99:3320,259,0 0/0:40,0:40:99:0,111,1514 0/0:54,0:54:99:0,150,2039 0/1:26,15:41:99:432,0,879 1/1:1,32:33:61.52:1162,62,0 1/1:0,53:53:99:1880,156,0 0/1:20,20:40:99:594,0,632 0/1:31,21:52:99:593,0,982 0/0:44,0:44:99:0,132,1678 1/1:0,86:86:99:3059,250,0 1/1:0,56:56:99:1942,159,0 1/1:0,58:58:99:2025,168,0 1/1:0,49:49:99:1757,141,0 1/1:0,40:40:99:1427,117,0 0/1:40,49:89:99:1415,0,1165 1/1:0,39:39:99:1404,114,0 0/1:30,25:55:99:762,0,977 1/1:0,41:41:99:1456,117,0 0/1:24,20:44:99:603,0,718 1/1:0,39:39:99:1371,111,0 12 57866316 . GTGAAGTT G 500.79 . 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T G 647.04 . 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C T 628.97 . AC=3;AF=0.036;AN=84;BaseQRankSum=-2.064;DP=1093;Dels=0.00;FS=7.020;HRun=1;HaplotypeScore=1.2863;InbreedingCoeff=-0.0371;MQ=58.66;MQ0=0;MQRankSum=1.496;QD=9.12;ReadPosRankSum=-1.730 GT:AD:DP:GQ:PL 0/1:14,5:19:99:123,0,419 0/1:10,7:18:99:193,0,272 0/0:18,0:18:48.11:0,48,552 0/0:52,0:52:99:0,138,1796 0/0:53,0:53:99:0,135,1753 0/0:34,0:34:78.23:0,78,994 0/1:13,16:32:99:389,0,434 0/0:38,0:41:87.28:0,87,1169 0/0:20,0:20:51.15:0,51,623 0/0:14,0:14:42.08:0,42,473 0/0:17,0:17:48.12:0,48,566 0/0:22,0:22:57.11:0,57,653 0/0:19,0:19:45.14:0,45,569 0/0:19,0:19:45.11:0,45,546 0/0:57,0:57:99:0,150,1854 0/0:25,0:25:57.14:0,57,688 0/0:18,0:18:42.11:0,42,528 0/0:14,0:14:39.12:0,39,480 0/0:26,0:27:72.21:0,72,878 0/0:34,0:34:81.24:0,81,987 0/0:32,2:34:75.21:0,75,914 0/0:13,0:13:39.12:0,39,494 0/0:80,0:81:99:0,205,2673 0/0:31,0:32:78.24:0,78,1018 0/0:36,0:36:93.27:0,93,1219 0/0:26,0:26:57.16:0,57,703 0/0:19,0:19:51.14:0,51,630 0/0:11,0:11:27.08:0,27,333 0/0:12,0:12:33.10:0,33,422 0/0:22,0:22:60.15:0,60,726 0/0:20,0:20:48.14:0,48,600 0/0:42,0:42:99:0,108,1349 0/0:12,0:12:33.10:0,33,411 0/0:15,0:15:36.11:0,36,449 0/0:14,0:14:36.11:0,36,446 0/0:20,0:21:54.17:0,54,667 0/0:29,0:29:75.21:0,75,920 0/0:21,0:21:57.17:0,57,691 0/0:24,0:24:60.17:0,60,752 0/0:14,0:14:33.10:0,33,411 0/0:21,0:21:60.18:0,60,732 0/0:21,0:21:60.18:0,60,734 12 57884125 . G A 2429.95 . 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C A 270.38 . 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C CA 780.94 . 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G A 11424.41 . 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C A 3081.72 . AC=3;AF=0.036;AN=84;BaseQRankSum=-0.175;DP=2034;Dels=0.00;FS=9.072;HRun=2;HaplotypeScore=1.0128;InbreedingCoeff=-0.0370;MQ=59.26;MQ0=0;MQRankSum=0.839;QD=12.53;ReadPosRankSum=0.328 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,105,1289 0/0:39,0:39:93.27:0,93,1168 0/0:34,0:34:87.28:0,87,1122 0/1:58,48:107:99:1242,0,1746 0/0:95,0:95:99:0,244,3238 0/0:64,0:64:99:0,178,2341 0/0:53,0:53:99:0,135,1769 0/0:41,0:41:99:0,99,1315 0/0:42,0:42:99:0,117,1445 0/0:27,0:27:81.25:0,81,989 0/0:31,0:31:87.26:0,87,1075 0/0:20,0:20:54.17:0,54,686 0/0:24,0:24:66.20:0,66,819 0/1:15,13:28:99:336,0,481 0/0:116,1:117:99:0,295,3703 0/0:18,0:18:51.16:0,51,638 0/0:41,0:41:99:0,111,1404 0/0:29,0:29:75.23:0,75,937 0/0:77,1:78:99:0,193,2433 0/0:82,0:82:99:0,214,2645 0/0:75,0:75:99:0,193,2387 0/0:62,0:62:99:0,147,1867 0/1:57,54:111:99:1579,0,1991 0/0:64,0:64:99:0,166,2240 0/0:56,0:56:99:0,153,2056 0/0:58,0:58:99:0,163,2150 0/0:35,0:35:93.29:0,93,1173 0/0:42,0:42:99:0,108,1338 0/0:42,0:42:99:0,120,1488 0/0:35,0:35:93.27:0,93,1175 0/0:30,0:30:84.26:0,84,1052 0/0:59,0:59:99:0,153,1925 0/0:40,0:40:99:0,111,1367 0/0:14,0:14:42.13:0,42,517 0/0:26,0:26:72.23:0,72,909 0/0:44,0:44:99:0,111,1417 0/0:70,0:70:99:0,187,2304 0/0:27,0:27:69.22:0,69,869 0/0:38,0:38:99:0,108,1351 0/0:38,0:38:99:0,108,1317 0/0:27,0:27:78.25:0,78,968 0/0:33,0:33:93.28:0,93,1157 12 57975700 . C T 409.52 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.624;DP=2855;Dels=0.00;FS=0.989;HRun=0;HaplotypeScore=1.7384;InbreedingCoeff=-0.0120;MQ=58.82;MQ0=0;MQRankSum=0.571;QD=11.70;ReadPosRankSum=-0.769 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,120,1519 0/0:36,0:36:99:0,102,1277 0/0:36,0:36:96.25:0,96,1192 0/0:142,0:142:99:0,349,4653 0/0:137,0:137:99:0,349,4722 0/0:86,0:86:99:0,220,2891 0/0:89,0:89:99:0,214,2792 0/0:101,0:101:99:0,247,3351 0/0:57,0:57:99:0,153,1965 0/0:41,0:41:99:0,102,1325 0/0:53,0:53:99:0,141,1781 0/0:42,0:42:99:0,111,1419 0/0:47,0:47:99:0,132,1672 0/0:59,0:59:99:0,153,1989 0/0:173,0:173:99:0,439,5421 0/0:36,0:36:99:0,102,1263 0/0:56,0:56:99:0,150,1873 0/1:19,16:35:99:456,0,527 0/0:80,0:81:99:0,187,2330 0/0:101,0:101:99:0,259,3285 0/0:87,0:87:99:0,196,2471 0/0:53,0:53:99:0,138,1723 0/0:164,0:164:99:0,418,5569 0/0:91,0:91:99:0,232,3111 0/0:104,0:104:99:0,265,3490 0/0:94,0:95:99:0,235,3116 0/0:40,0:41:99:0,105,1307 0/0:44,0:45:99:0,108,1396 0/0:33,0:33:96.30:0,96,1205 0/0:52,0:52:99:0,144,1823 0/0:40,0:40:99:0,114,1422 0/0:83,0:83:99:0,190,2474 0/0:62,0:62:99:0,163,2088 0/0:49,0:49:99:0,132,1618 0/0:40,0:41:99:0,111,1387 0/0:55,0:55:99:0,147,1892 0/0:71,0:71:99:0,193,2353 0/0:49,0:49:99:0,141,1777 0/0:37,0:37:96.30:0,96,1225 0/0:52,0:52:99:0,132,1642 0/0:49,0:49:99:0,135,1673 0/0:49,0:49:99:0,132,1624 12 57995089 . T C 115701.19 . AC=82;AF=0.976;AN=84;BaseQRankSum=4.386;DP=3621;DS;Dels=0.00;FS=9.360;HRun=1;HaplotypeScore=1.8384;InbreedingCoeff=-0.0244;MQ=59.43;MQ0=0;MQRankSum=0.581;QD=31.95;ReadPosRankSum=-0.154 GT:AD:DP:GQ:PL 1/1:0,71:72:99:2312,184,0 1/1:0,81:82:99:2625,205,0 1/1:0,59:59:99:1923,153,0 1/1:0,158:160:99:5568,427,0 1/1:0,146:146:99:4958,373,0 0/1:59,57:116:99:1751,0,1517 0/1:55,53:108:99:1575,0,1530 1/1:0,103:104:99:3468,262,0 1/1:0,64:64:99:2244,178,0 1/1:0,54:54:99:1832,144,0 1/1:0,58:59:99:1948,153,0 1/1:0,60:61:99:1957,156,0 1/1:0,61:61:99:2086,163,0 1/1:0,69:69:99:2383,193,0 1/1:0,241:245:99:7583,602,0 1/1:0,68:68:99:2273,181,0 1/1:0,81:82:99:2593,202,0 1/1:0,63:64:99:2166,178,0 1/1:0,115:115:99:3800,310,0 1/1:0,119:119:99:3706,292,0 1/1:0,98:98:99:3205,250,0 1/1:1,67:68:99:2150,139,0 1/1:0,148:148:99:5106,382,0 1/1:0,95:95:99:3185,238,0 1/1:0,102:103:99:3287,247,0 1/1:0,86:86:99:2865,214,0 1/1:0,44:44:99:1444,114,0 1/1:0,73:74:99:2511,199,0 1/1:0,71:71:99:2257,178,0 1/1:0,52:52:99:1720,138,0 1/1:0,65:65:99:2209,175,0 1/1:0,90:90:99:2899,226,0 1/1:0,79:79:99:2575,205,0 1/1:0,67:70:99:2301,181,0 1/1:0,73:73:99:2395,190,0 1/1:0,72:72:99:2518,202,0 1/1:0,95:95:99:3130,253,0 1/1:0,79:79:99:2634,208,0 1/1:0,54:54:99:1873,150,0 1/1:0,88:88:99:2900,232,0 1/1:0,63:63:99:2147,169,0 1/1:0,46:46:99:1639,129,0 12 58005682 . G A 2764.06 . AC=15;AF=0.183;AN=82;BaseQRankSum=10.092;DP=333;Dels=0.00;FS=11.612;HRun=0;HaplotypeScore=0.3157;InbreedingCoeff=0.2088;MQ=58.40;MQ0=0;MQRankSum=0.590;QD=20.18;ReadPosRankSum=1.268 GT:AD:DP:GQ:PL 0/0:4,0:4:12.03:0,12,128 0/0:7,0:7:21.02:0,21,205 0/0:4,0:4:12.03:0,12,130 0/0:23,0:23:60.17:0,60,699 0/0:19,0:19:54.14:0,54,606 0/1:6,5:11:99:118,0,175 0/0:9,0:9:21.06:0,21,251 1/1:1,18:19:23.74:614,24,0 0/0:7,0:7:21.04:0,21,215 0/0:4,0:4:12.03:0,12,128 0/1:4,4:8:99:123,0,107 0/0:4,0:4:12.03:0,12,129 0/0:6,0:6:18.04:0,18,192 0/0:6,0:6:18.04:0,18,190 1/1:0,27:27:69.21:860,69,0 0/1:3,2:5:60.52:61,0,77 0/1:3,4:7:76.42:120,0,76 1/1:0,3:3:9.03:104,9,0 0/0:4,0:4:12.03:0,12,127 0/0:4,0:4:9.02:0,9,99 0/0:6,0:6:15.04:0,15,181 0/1:3,2:5:57.23:57,0,73 0/1:10,18:28:99:513,0,250 0/1:5,3:8:82.46:82,0,139 0/1:6,5:11:99:149,0,144 0/0:9,0:9:27.05:0,27,291 0/0:7,0:7:21.05:0,21,221 0/0:4,0:4:12.01:0,12,123 0/0:3,0:3:9.02:0,9,95 0/0:5,0:5:12.03:0,12,128 0/0:6,0:6:18.04:0,18,194 0/1:1,4:5:14.58:133,0,15 0/0:4,0:4:12.03:0,12,129 0/0:8,0:8:24.05:0,24,242 0/0:6,0:6:12.02:0,12,121 0/0:9,0:9:27.07:0,27,292 0/0:6,0:6:18.04:0,18,185 0/0:7,1:8:21.05:0,21,227 0/0:5,0:5:15.04:0,15,160 0/0:2,0:2:6.01:0,6,61 ./. 0/0:7,0:7:21.05:0,21,226 12 58010627 . A AC 4245.24 . 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T C 7198.54 . AC=38;AF=0.452;AN=84;BaseQRankSum=-46.653;DP=6507;DS;Dels=0.00;FS=3200.000;HRun=4;HaplotypeScore=42.4903;InbreedingCoeff=-0.7984;MQ=60.26;MQ0=0;MQRankSum=21.206;QD=1.23;ReadPosRankSum=-21.369 GT:AD:DP:GQ:PL 0/1:72,42:114:99:132,0,1996 0/1:70,41:111:99:149,0,2001 0/1:72,40:112:78:78,0,2145 0/1:115,134:250:99:793,0,3127 0/1:90,138:228:99:963,0,2256 0/1:123,76:200:99:160,0,3502 0/1:90,91:181:26.84:27,0,2393 0/1:91,96:187:99:327,0,2573 0/1:88,54:143:99:103,0,2343 0/1:67,32:99:65.25:65,0,1960 0/1:93,46:140:46.15:46,0,2815 0/1:61,40:101:99:112,0,1772 0/1:59,42:101:83.99:84,0,1648 0/1:81,38:122:99:138,0,2287 0/1:138,111:249:99:794,0,3989 0/1:63,35:99:14.20:14,0,1856 0/1:92,58:151:99:108,0,2541 0/1:56,46:102:99:347,0,1535 0/1:131,66:197:99:306,0,3737 0/1:154,94:250:4.98:5,0,3984 0/1:130,57:187:99:177,0,3688 0/1:101,58:161:25.13:25,0,2693 0/1:127,123:250:99:416,0,3667 0/1:87,83:170:99:257,0,2259 0/1:104,101:206:99:270,0,2874 0/1:97,81:180:99:209,0,2598 0/1:62,28:90:15.47:15,0,1812 0/1:82,51:133:99:209,0,2237 0/1:71,45:116:90.70:91,0,2141 0/1:67,49:116:99:179,0,1963 0/1:77,47:125:6.61:7,0,2255 0/0:171,78:250:99:0,192,4553 0/0:106,41:147:74.62:0,75,2812 0/1:76,44:120:69.91:70,0,2225 0/1:77,43:121:99:112,0,2361 0/0:94,43:139:68.45:0,68,2654 0/1:165,79:244:93.93:94,0,4820 0/1:81,51:132:99:249,0,2337 0/0:80,37:118:3.27:0,3,2385 0/1:83,47:130:5.95:6,0,2418 0/1:70,39:109:58.56:59,0,1947 0/1:82,43:126:2.97:3,0,2239 12 58015494 . G A 3190.43 . AC=35;AF=0.417;AN=84;BaseQRankSum=-8.849;DP=351;Dels=0.00;FS=0.440;HRun=0;HaplotypeScore=0.4219;InbreedingCoeff=0.0480;MQ=58.73;MQ0=0;MQRankSum=-0.031;QD=14.50;ReadPosRankSum=0.210 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,185 0/0:6,0:6:12.01:0,12,142 0/1:3,2:5:54.77:55,0,67 0/0:18,0:18:48.14:0,48,614 0/1:8,9:17:99:207,0,254 0/1:8,6:14:99:153,0,273 1/1:0,7:7:21.06:235,21,0 0/0:9,0:9:24.08:0,24,316 0/0:6,0:6:18.06:0,18,226 0/1:1,4:5:23.53:119,0,24 0/1:5,4:9:92.06:92,0,153 0/1:7,1:8:9.36:9,0,230 1/1:0,4:4:12.03:133,12,0 0/0:6,0:6:18.03:0,18,208 0/0:24,0:24:60.19:0,60,755 0/0:5,0:5:15.04:0,15,174 0/1:1,3:4:25.34:53,0,25 0/1:5,2:7:45.79:46,0,152 0/1:14,1:15:3.89:4,0,352 0/1:8,7:15:99:181,0,212 0/1:5,6:11:99:179,0,146 0/0:8,0:8:21.06:0,21,256 0/0:21,0:21:48.14:0,48,621 1/1:0,5:5:12.04:143,12,0 0/1:3,5:8:94.31:154,0,94 0/1:5,3:8:80.05:80,0,127 0/0:3,0:3:9.03:0,9,108 0/0:3,0:3:9.03:0,9,110 0/1:3,2:5:52.31:57,0,52 0/1:3,5:8:69.66:70,0,93 0/0:5,0:5:15.04:0,15,169 0/1:2,13:15:27.38:339,0,27 1/1:0,6:6:18.02:191,18,0 0/1:2,2:4:24.41:24,0,60 0/0:6,0:6:15.05:0,15,188 1/1:0,4:4:12.03:134,12,0 0/1:2,7:9:20.73:204,0,21 1/1:0,8:8:15.04:190,15,0 0/1:7,3:10:69.26:69,0,221 1/1:0,5:5:12.04:148,12,0 1/1:0,4:4:12.04:139,12,0 0/0:6,0:6:18.06:0,18,226 12 58015596 . C A 591.20 . AC=24;AF=0.286;AN=84;BaseQRankSum=-7.226;DP=680;Dels=0.00;FS=305.563;HRun=1;HaplotypeScore=0.7329;InbreedingCoeff=-0.4251;MQ=58.59;MQ0=0;MQRankSum=1.366;QD=1.42;ReadPosRankSum=-1.232 GT:AD:DP:GQ:PL 0/0:12,3:15:3.41:0,3,307 0/0:8,3:11:12.03:0,12,139 0/1:10,3:13:8.43:8,0,223 0/0:41,7:48:47.34:0,47,885 0/1:18,4:22:11.01:11,0,452 0/1:20,9:29:68.63:69,0,560 0/1:17,7:24:67.71:68,0,377 0/1:22,7:29:25.49:25,0,548 0/1:8,4:12:50.95:51,0,177 0/0:11,3:14:24.08:0,24,310 0/1:8,2:10:44.33:44,0,181 0/0:6,1:7:12.04:0,12,152 0/0:8,0:8:21.07:0,21,260 0/1:11,3:14:47.31:47,0,198 0/1:23,12:35:6.61:7,0,607 0/1:13,3:16:10.16:10,0,269 0/0:6,1:7:18.05:0,18,216 0/0:9,2:11:27.08:0,27,324 0/0:16,1:17:2.13:0,2,379 0/0:9,5:14:17.25:0,17,185 0/1:14,2:16:27.12:27,0,291 0/1:12,3:15:48.57:49,0,154 0/1:31,11:42:28.69:29,0,724 0/1:13,7:20:52.71:53,0,254 0/1:16,8:24:4.63:5,0,263 0/0:15,4:19:2.40:0,2,298 0/1:6,2:8:18.56:19,0,97 0/1:12,5:17:47.73:48,0,312 0/0:5,1:6:9.03:0,9,106 0/1:11,5:16:5.63:6,0,172 0/0:14,4:18:36.08:0,36,413 0/0:19,2:21:45.12:0,45,540 0/1:10,5:15:84.19:84,0,220 0/0:9,5:14:0.46:0,0,287 0/1:4,2:6:15.67:16,0,68 0/1:9,3:12:12.13:12,0,185 0/0:15,5:21:2.66:0,3,340 0/0:6,0:6:15.04:0,15,172 0/1:7,2:9:9.61:10,0,168 0/1:3,3:6:45:45,0,87 0/0:6,1:7:12.04:0,12,144 0/1:5,1:6:12.66:13,0,101 12 58023981 . C A 15748.44 . AC=17;AF=0.202;AN=84;BaseQRankSum=-21.108;DP=2318;Dels=0.00;FS=0.810;HRun=1;HaplotypeScore=1.1697;InbreedingCoeff=0.1888;MQ=59.33;MQ0=0;MQRankSum=1.856;QD=19.39;ReadPosRankSum=1.257 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,129,1610 0/0:46,0:46:99:0,132,1625 0/0:45,0:45:99:0,129,1619 0/1:52,40:92:99:1124,0,1624 0/0:88,0:88:99:0,256,3445 0/0:62,0:62:99:0,172,2304 0/1:25,22:47:99:677,0,845 0/0:73,0:73:99:0,208,2749 0/1:22,26:48:99:770,0,642 0/1:22,14:36:99:408,0,636 0/0:49,0:49:99:0,138,1740 0/1:29,22:51:99:642,0,811 0/0:36,0:36:99:0,102,1274 1/1:0,46:46:99:1543,132,0 1/1:0,127:127:99:4275,361,0 0/1:18,15:33:99:369,0,545 0/1:26,13:39:99:360,0,721 0/1:24,18:42:99:490,0,737 0/0:56,1:57:99:0,156,1954 0/0:104,0:104:99:0,292,3698 0/0:80,0:80:99:0,232,2914 0/1:30,17:47:99:457,0,891 1/1:1,81:82:99:2849,204,0 0/0:71,0:71:99:0,202,2710 0/0:64,0:64:99:0,169,2278 0/0:49,0:49:99:0,132,1772 0/0:26,0:26:72.23:0,72,905 0/0:39,0:39:99:0,99,1253 0/0:28,0:28:84.22:0,84,1047 0/0:54,0:54:99:0,153,1956 0/0:36,0:36:99:0,105,1309 0/1:35,42:77:99:1158,0,1014 0/0:50,0:50:99:0,141,1765 0/0:38,0:38:99:0,111,1384 0/1:23,21:45:99:629,0,717 0/0:44,0:44:99:0,111,1375 0/0:72,0:72:99:0,190,2387 0/0:51,0:51:99:0,147,1829 0/0:57,0:57:99:0,166,2038 0/0:48,0:48:99:0,132,1613 0/0:50,0:50:99:0,144,1826 0/0:44,0:44:99:0,120,1509 12 58025813 . G C 1390.60 . AC=19;AF=0.238;AN=80;BaseQRankSum=-3.989;DP=191;Dels=0.00;FS=2.198;HRun=2;HaplotypeScore=0.3444;InbreedingCoeff=0.1475;MQ=59.09;MQ0=0;MQRankSum=2.009;QD=17.17;ReadPosRankSum=0.160 GT:AD:DP:GQ:PL 0/0:2,0:2:3.01:0,3,45 0/0:4,0:4:12.02:0,12,132 ./. 0/1:6,4:10:99:115,0,205 0/0:6,0:6:18.06:0,18,232 0/0:4,0:4:12.04:0,12,163 0/1:3,4:7:99:133,0,102 0/0:6,0:6:15.05:0,15,197 0/1:2,2:4:56.59:57,0,63 0/1:2,3:5:62.08:80,0,62 ./. 0/1:4,2:6:52.43:52,0,128 0/0:2,0:2:6.02:0,6,77 1/1:0,7:7:21.06:250,21,0 1/1:0,11:11:24.07:295,24,0 0/1:1,2:3:28.77:65,0,29 0/1:2,2:4:56.65:57,0,60 0/1:3,1:4:20.46:20,0,100 0/0:6,0:6:18.06:0,18,226 0/0:8,0:8:24.08:0,24,297 0/0:5,0:5:12.03:0,12,136 0/1:2,1:3:20.60:21,0,67 1/1:0,6:6:15.05:188,15,0 0/0:3,0:3:6.02:0,6,71 0/0:1,0:1:3.01:0,3,41 0/0:4,0:4:12.04:0,12,160 0/0:2,0:2:6.02:0,6,71 0/0:10,0:10:27.08:0,27,335 1/1:0,5:5:12.03:146,12,0 0/0:5,0:5:15.05:0,15,189 0/0:3,0:3:9.03:0,9,108 0/1:2,3:5:54.88:86,0,55 0/0:8,0:8:24.07:0,24,288 0/0:1,0:1:3.01:0,3,39 0/0:5,0:5:15.04:0,15,182 0/1:1,0:1:1.76:0,3,38 0/0:8,0:8:15.05:0,15,194 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,72 0/0:5,0:5:12.04:0,12,160 0/0:4,0:4:12.04:0,12,144 0/0:5,0:5:15.05:0,15,191 12 58025837 . T A 4.32 . AC=1;AF=0.012;AN=82;BaseQRankSum=-0.990;DP=176;Dels=0.00;FS=2.772;HRun=0;HaplotypeScore=0.1770;InbreedingCoeff=-0.0675;MQ=59.58;MQ0=0;MQRankSum=1.124;QD=0.62;ReadPosRankSum=0.767 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.03:0,9,112 0/0:1,0:1:3.01:0,3,35 0/0:6,0:6:15.04:0,15,172 0/0:7,0:7:21.06:0,21,243 0/0:5,0:5:15.04:0,15,176 0/0:5,0:5:15.05:0,15,185 0/0:4,0:4:12.02:0,12,123 0/0:3,0:3:9.03:0,9,102 0/0:6,0:6:15.04:0,15,174 ./. 0/0:8,0:8:21.06:0,21,253 0/0:4,0:5:9:0,9,96 0/0:3,0:3:9.03:0,9,107 0/0:10,0:10:27.07:0,27,314 0/0:3,0:3:9.01:0,9,96 0/0:3,0:3:9.01:0,9,94 0/0:3,0:3:9.03:0,9,106 0/0:3,0:3:9.03:0,9,104 0/0:11,0:11:30.03:0,30,324 0/0:4,0:5:12.04:0,12,145 0/0:3,0:3:9.01:0,9,82 0/0:6,0:6:18.05:0,18,216 0/0:3,0:3:9.03:0,9,109 0/0:1,0:1:3.01:0,3,39 0/0:4,0:4:12.04:0,12,145 0/0:3,0:3:6.02:0,6,68 0/1:5,2:7:47.79:48,0,127 0/0:3,0:3:6:0,6,67 0/0:1,0:2:2.99:0,3,23 0/0:5,0:5:15.05:0,15,182 0/0:6,0:6:18.04:0,18,201 0/0:5,0:6:15.03:0,15,168 0/0:2,0:2:6.02:0,6,67 0/0:2,0:2:6.02:0,6,69 0/0:4,0:4:12.03:0,12,134 0/0:6,0:6:15.04:0,15,177 0/0:2,0:2:6.02:0,6,70 0/0:3,0:3:9.03:0,9,110 0/0:6,0:6:18.05:0,18,217 0/0:3,0:3:9.03:0,9,102 0/0:4,0:4:9.01:0,9,99 12 58123429 . CTG C 140.92 . AC=5;AF=0.060;AN=84;BaseQRankSum=-3.475;DP=4278;DS;FS=2603.811;HRun=0;HaplotypeScore=316.9584;InbreedingCoeff=-0.0734;MQ=59.63;MQ0=1;MQRankSum=0.825;QD=0.28;ReadPosRankSum=-25.236 GT:AD:DP:GQ:PL 0/0:71,0:71:99:0,149,3916 0/0:62,0:62:55.68:0,56,3024 0/1:56,0:56:24.65:25,0,2544 0/0:250,0:250:99:0,352,13048 0/0:247,0:247:99:0,275,12481 0/0:225,0:225:99:0,249,9757 0/0:164,0:162:99:0,296,8564 0/0:160,0:159:99:0,272,8304 0/0:53,0:53:65.25:0,65,2688 0/0:58,0:58:62.04:0,62,2951 0/0:58,0:58:87.76:0,88,2975 0/0:63,0:63:83.14:0,83,3280 0/0:47,0:47:99:0,108,2491 0/1:61,0:61:23.80:24,0,2697 0/1:250,0:250:99:135,0,9948 0/0:45,0:45:44.14:0,44,2216 0/0:65,0:65:0.78:7,0,3155 0/0:50,11:61:99:0,113,2777 0/0:102,0:102:99:0,99,5187 0/0:129,0:129:99:0,260,6856 0/0:126,0:126:99:0,170,6255 0/0:80,0:80:99:0,137,4167 0/0:250,0:250:99:0,166,12372 0/0:177,0:177:99:0,278,7576 0/0:190,0:188:99:0,293,9496 0/0:142,0:139:99:0,227,7287 0/0:40,11:51:89.75:0,90,2309 0/1:65,0:65:48.54:49,0,2814 0/0:50,0:50:99:0,138,2713 0/0:71,0:71:37.01:0,37,3455 0/0:54,0:54:57.87:0,58,2742 0/0:112,0:112:99:0,283,6164 0/0:61,0:61:99:0,169,3308 0/0:63,0:63:46.94:0,47,2944 0/0:62,0:62:62.49:0,62,3070 0/0:76,0:76:80.03:0,80,3756 0/0:111,0:110:80.05:0,80,5371 0/0:74,0:74:99:0,145,3733 0/0:46,0:46:99:0,117,2346 0/0:72,0:72:15.43:0,15,3152 0/1:64,0:64:9:9,0,2773 0/0:54,0:54:91.02:0,91,2773 12 58123431 . G C 75.68 . 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G GC 468.98 . 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T TC 44.36 . 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CCTTTT C 4.10 . 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A T 14399.04 . 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C T 37892.50 . 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A T 56099.14 . 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G C 65.16 . AC=8;AF=0.182;AN=44;BaseQRankSum=-1.503;DP=65;Dels=0.00;FS=22.109;HRun=1;HaplotypeScore=0.1863;InbreedingCoeff=0.1837;MQ=55.89;MQ0=0;MQRankSum=2.282;QD=6.52;ReadPosRankSum=-1.781 GT:AD:DP:GQ:PL 1/1:0,3:3:3.01:31,3,0 0/0:3,0:3:6.02:0,6,67 0/0:1,0:1:3.01:0,3,37 1/1:1,1:2:3.01:32,3,0 0/0:1,0:1:3.01:0,3,35 ./. 0/0:1,0:1:3.01:0,3,36 0/0:2,1:3:3.01:0,3,40 0/0:2,0:2:6.01:0,6,64 ./. ./. 0/0:1,0:2:3.01:0,3,40 0/0:2,0:2:3.01:0,3,34 ./. 0/0:2,5:7:6.02:0,6,71 ./. ./. 0/0:1,0:1:3:0,3,29 ./. ./. 0/0:1,0:1:3.01:0,3,32 0/0:1,0:1:3.01:0,3,39 ./. ./. ./. ./. 0/0:3,1:4:3.01:0,3,32 0/0:1,1:2:3.01:0,3,35 ./. ./. ./. 0/0:5,1:6:9.03:0,9,111 0/1:2,1:3:26.23:26,0,51 0/0:1,1:2:3.01:0,3,39 ./. 0/0:1,0:1:3.01:0,3,39 1/1:0,1:1:3.01:36,3,0 ./. 0/1:0,1:1:1.76:22,3,0 ./. ./. ./. 12 59313936 . T G 93.56 . AC=7;AF=0.106;AN=66;BaseQRankSum=2.463;DP=54;Dels=0.00;FS=2.451;HRun=1;HaplotypeScore=0.0414;InbreedingCoeff=0.1602;MQ=52.54;MQ0=0;MQRankSum=1.030;QD=13.37;ReadPosRankSum=-0.672 GT:AD:DP:GQ:PL 0/0:3,0:3:9.03:0,9,110 0/0:2,0:2:6.02:0,6,67 ./. 0/0:3,0:3:6.02:0,6,70 0/0:1,0:1:3.01:0,3,36 0/0:2,0:2:3.01:0,3,39 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,34 0/0:2,0:2:6.01:0,6,67 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,38 0/0:1,0:1:3.01:0,3,37 ./. ./. 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.03:0,9,107 0/0:2,0:2:6.02:0,6,68 0/0:1,0:1:3.01:0,3,38 0/0:1,0:1:3.01:0,3,36 0/1:0,1:1:1.76:33,3,0 0/0:3,0:3:9.03:0,9,111 ./. 0/0:1,1:2:3.01:0,3,33 1/1:0,1:1:3.01:40,3,0 0/1:0,1:1:1.76:39,3,0 1/1:0,2:2:3.01:41,3,0 0/0:1,0:1:3.01:0,3,38 ./. 0/0:1,0:1:3.01:0,3,37 0/1:1,1:2:26.48:33,0,26 ./. 0/0:2,0:2:6.02:0,6,66 0/0:2,0:2:6.02:0,6,73 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:6.02:0,6,69 0/0:2,0:2:6.02:0,6,70 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,74 ./. ./. 0/0:1,0:1:3.01:0,3,33 ./. 12 62798066 . G C 6716.42 . AC=39;AF=0.464;AN=84;BaseQRankSum=-23.685;DP=4118;DS;Dels=0.00;FS=1388.443;HRun=1;HaplotypeScore=2.6996;InbreedingCoeff=-0.8704;MQ=58.26;MQ0=0;MQRankSum=6.603;QD=1.76;ReadPosRankSum=-17.786 GT:AD:DP:GQ:PL 0/1:32,35:67:67.42:67,0,847 0/1:46,35:81:96.44:96,0,1150 0/1:30,31:61:99:127,0,830 0/1:53,109:162:99:450,0,1460 0/1:58,130:188:99:525,0,1718 0/1:65,120:185:87.05:87,0,1499 0/1:58,101:159:99:123,0,1753 0/1:59,99:158:99:151,0,1497 0/1:25,31:56:99:165,0,812 0/1:16,41:57:99:265,0,490 0/1:28,32:60:99:147,0,724 0/1:31,41:72:99:134,0,825 0/1:25,36:61:99:170,0,671 0/1:29,35:65:97.34:97,0,705 0/1:87,140:228:99:427,0,2519 0/1:17,29:46:60.27:60,0,473 0/1:43,35:78:42.33:42,0,1117 0/1:28,46:75:99:289,0,761 0/1:37,63:101:99:354,0,994 0/0:58,57:116:14.07:0,14,1257 0/1:50,48:100:99:152,0,1342 0/1:42,46:88:70.96:71,0,1184 0/1:80,146:226:99:364,0,2476 0/1:74,130:204:99:124,0,2039 0/1:53,91:146:90.57:91,0,1259 0/1:56,94:150:99:238,0,1699 0/1:37,25:62:98.66:99,0,982 0/1:30,46:76:99:177,0,801 0/0:29,30:59:12.30:0,12,826 0/1:32,33:65:47.06:47,0,825 0/1:23,40:63:33.08:33,0,629 0/0:62,56:119:60.47:0,60,1466 0/1:26,39:65:99:142,0,606 0/1:29,43:72:24.93:25,0,730 0/1:24,43:67:99:108,0,613 0/1:29,34:63:99:114,0,781 0/1:33,49:85:99:367,0,959 0/1:30,38:68:99:149,0,924 0/1:34,33:67:99:150,0,897 0/1:25,40:65:99:159,0,691 0/1:32,36:68:99:124,0,670 0/1:24,40:64:99:205,0,638 12 62928633 . G A 41002.36 . 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C T 2555.15 . 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A G 15675.97 . 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G A 9723.71 . 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C G 40.73 . 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C CG 1313.05 . 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C A 4661.36 . AC=65;AF=0.855;AN=76;BaseQRankSum=-2.942;DP=180;Dels=0.00;FS=21.850;HRun=1;HaplotypeScore=0.1157;InbreedingCoeff=0.2279;MQ=59.04;MQ0=0;MQRankSum=-1.200;QD=29.13;ReadPosRankSum=-0.467 GT:AD:DP:GQ:PL 1/1:0,9:9:21.07:276,21,0 1/1:0,3:3:9.03:111,9,0 0/1:1,2:3:30.11:39,0,30 ./. 1/1:0,1:1:3.01:38,3,0 0/0:2,0:2:6.02:0,6,81 1/1:0,1:1:3.01:39,3,0 ./. 1/1:0,2:2:6.02:74,6,0 ./. 1/1:0,5:5:12.04:150,12,0 0/1:2,2:4:60.19:60,0,64 0/1:6,2:8:29.72:30,0,144 1/1:0,5:5:15.05:187,15,0 1/1:0,13:13:30.09:383,30,0 1/1:0,6:6:12.04:164,12,0 1/1:0,4:4:12.04:149,12,0 1/1:1,2:3:6.02:75,6,0 1/1:0,9:9:27.08:330,27,0 1/1:0,6:6:12.04:155,12,0 0/0:16,0:16:33.11:0,33,454 0/1:1,1:2:30.96:31,0,33 0/0:2,0:2:6.02:0,6,81 ./. 1/1:0,2:2:6.02:76,6,0 1/1:0,2:2:6.02:76,6,0 1/1:0,2:2:6.02:76,6,0 1/1:0,7:7:18.06:230,18,0 1/1:0,2:2:6.01:61,6,0 1/1:0,6:6:15.05:190,15,0 1/1:0,2:2:6.02:76,6,0 0/1:7,5:12:99:129,0,167 1/1:0,3:3:9.03:111,9,0 1/1:0,1:1:3.01:37,3,0 1/1:0,3:3:9.03:113,9,0 1/1:0,5:5:12.04:158,12,0 1/1:0,7:7:18.06:224,18,0 1/1:0,6:6:18.06:222,18,0 1/1:0,4:4:12.04:145,12,0 1/1:0,3:3:9.03:113,9,0 1/1:0,6:6:18.06:223,18,0 1/1:0,3:3:9.03:112,9,0 12 64849716 . T C 2160.60 . 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A G 3798.14 . AC=22;AF=0.262;AN=84;BaseQRankSum=11.895;DP=574;Dels=0.00;FS=5.856;HRun=0;HaplotypeScore=0.4657;InbreedingCoeff=0.0044;MQ=57.37;MQ0=0;MQRankSum=0.547;QD=16.23;ReadPosRankSum=0.180 GT:AD:DP:GQ:PL 0/1:3,6:9:73.12:201,0,73 0/0:8,0:8:21.07:0,21,264 0/0:9,0:9:21.06:0,21,262 0/1:27,10:37:99:292,0,759 0/0:37,0:37:93.26:0,93,1134 0/0:16,0:17:36.11:0,36,451 0/0:23,1:24:60.17:0,60,723 0/0:19,0:19:48.14:0,48,579 0/0:4,0:4:12.04:0,12,142 0/0:11,0:11:30.09:0,30,355 0/1:5,4:9:99:124,0,144 0/1:3,3:6:84.93:97,0,85 0/1:10,4:14:99:107,0,259 0/0:4,0:4:12.03:0,12,140 0/0:39,0:39:87.23:0,87,1080 0/1:3,4:7:83.79:132,0,84 0/1:5,5:10:99:158,0,150 0/0:7,0:7:18.06:0,18,222 0/1:5,8:13:99:209,0,146 0/1:4,5:9:99:160,0,114 1/1:0,10:10:27.08:336,27,0 0/1:3,5:8:78.86:163,0,79 0/1:13,17:30:99:583,0,310 0/0:23,0:23:54.16:0,54,654 0/0:20,0:20:57.17:0,57,687 0/0:18,0:18:36.11:0,36,460 0/1:3,3:6:54.56:99,0,55 0/0:12,0:12:33.10:0,33,394 0/1:3,1:4:19.52:20,0,94 0/0:11,0:11:30.09:0,30,360 0/0:7,0:7:18.05:0,18,220 0/1:9,9:18:99:266,0,251 0/0:12,0:12:33.08:0,33,374 1/1:0,7:7:21.06:255,21,0 0/1:6,4:10:99:114,0,181 1/1:0,8:8:24.07:285,24,0 0/0:27,0:27:63.18:0,63,776 0/1:10,9:19:99:196,0,265 0/0:5,0:5:12.04:0,12,140 0/0:9,0:9:27.08:0,27,315 0/0:4,0:4:12.03:0,12,135 0/0:13,0:13:36.11:0,36,437 12 65141588 . C T 14387.24 . AC=10;AF=0.119;AN=84;BaseQRankSum=-20.759;DP=5786;DS;Dels=0.00;FS=6.412;HRun=2;HaplotypeScore=1.7691;InbreedingCoeff=0.0919;MQ=59.54;MQ0=0;MQRankSum=-0.970;QD=13.36;ReadPosRankSum=-0.302 GT:AD:DP:GQ:PL 0/0:100,0:100:99:0,277,3433 0/0:123,0:123:99:0,322,4079 0/0:81,0:81:99:0,235,2906 0/0:250,0:250:99:0,671,9035 0/0:249,0:250:99:0,659,8989 0/0:236,0:236:99:0,608,8248 0/0:197,0:197:99:0,503,6896 0/0:218,0:218:99:0,575,7731 0/0:111,0:111:99:0,307,3869 0/0:82,0:82:99:0,211,2665 0/0:99,0:99:99:0,277,3475 0/0:88,0:88:99:0,250,3175 0/0:101,0:101:99:0,265,3350 0/0:105,0:105:99:0,283,3584 0/0:250,0:250:99:0,653,8313 0/0:80,0:80:99:0,214,2680 0/1:49,49:98:99:1385,0,1327 0/0:83,0:83:99:0,229,2895 0/0:186,0:186:99:0,481,6115 0/0:179,0:179:99:0,478,6053 0/1:78,85:165:99:2199,0,2117 0/1:62,55:117:99:1438,0,1848 0/0:250,0:250:99:0,680,9195 0/0:206,0:206:99:0,533,7299 0/1:114,80:194:99:2155,0,3515 0/0:183,0:183:99:0,500,6761 1/1:0,66:66:99:2157,175,0 0/1:53,41:95:99:1108,0,1567 0/1:53,35:88:99:876,0,1617 0/0:111,0:111:99:0,301,3782 0/0:103,0:103:99:0,271,3435 0/1:84,72:156:99:1958,0,2281 0/0:144,0:144:99:0,373,4775 0/0:112,0:112:99:0,310,3893 0/0:103,0:103:99:0,277,3491 0/0:109,0:109:99:0,307,3813 0/0:168,0:170:99:0,427,5417 0/0:102,0:102:99:0,280,3497 0/0:106,0:106:99:0,298,3706 0/0:97,0:97:99:0,274,3411 0/0:94,0:94:99:0,259,3255 0/1:58,40:98:99:1111,0,1747 12 65448986 . G A 2414.41 . AC=2;AF=0.024;AN=84;BaseQRankSum=-10.243;DP=2117;Dels=0.00;FS=8.189;HRun=0;HaplotypeScore=0.9285;InbreedingCoeff=-0.0244;MQ=59.38;MQ0=0;MQRankSum=0.229;QD=13.27;ReadPosRankSum=0.256 GT:AD:DP:GQ:PL 0/0:32,0:32:93.28:0,93,1138 0/0:37,0:38:99:0,105,1302 0/0:48,0:48:99:0,141,1785 0/1:50,28:78:99:736,0,1713 0/0:67,0:68:99:0,199,2651 0/0:64,0:64:99:0,190,2478 0/0:51,0:51:99:0,147,1930 0/0:56,0:56:99:0,160,2112 0/0:50,0:50:99:0,141,1754 0/0:33,0:33:90.26:0,90,1124 0/0:39,0:39:99:0,105,1298 0/0:32,0:32:96.29:0,96,1196 0/0:37,0:37:99:0,102,1263 0/0:40,0:40:99:0,117,1455 0/0:153,0:155:99:0,430,5360 0/0:32,0:32:84.25:0,84,1038 0/0:49,0:50:99:0,135,1686 0/0:43,0:43:99:0,114,1447 0/0:54,0:54:99:0,153,1911 0/0:68,0:68:99:0,181,2260 0/0:68,0:69:99:0,196,2479 0/0:49,1:50:99:0,99,1616 0/1:44,58:104:99:1741,0,1422 0/0:58,0:58:99:0,172,2257 0/0:50,0:50:99:0,144,1905 0/0:44,0:44:99:0,129,1691 0/0:25,0:25:66.21:0,66,832 0/0:47,0:47:99:0,135,1670 0/0:38,0:38:99:0,111,1356 0/0:25,0:25:72.21:0,72,890 0/0:40,0:40:99:0,120,1484 0/0:54,0:54:99:0,156,1930 0/0:46,0:46:99:0,123,1549 0/0:49,0:49:99:0,141,1736 0/0:45,0:45:99:0,132,1606 0/0:47,1:48:99:0,107,1639 0/0:60,0:61:99:0,175,2170 0/0:42,0:42:99:0,120,1470 0/0:34,0:35:99:0,99,1244 0/0:40,0:40:99:0,117,1445 0/0:32,0:32:93.28:0,93,1142 0/0:46,0:46:99:0,132,1632 12 66696410 . C T 54796.58 . AC=48;AF=0.571;AN=84;BaseQRankSum=-26.911;DP=3168;Dels=0.00;FS=4.404;HRun=0;HaplotypeScore=2.2439;InbreedingCoeff=-0.2639;MQ=59.25;MQ0=0;MQRankSum=0.724;QD=19.60;ReadPosRankSum=-0.463 GT:AD:DP:GQ:PL 0/1:19,30:49:99:941,0,492 0/1:26,24:50:99:680,0,825 0/1:19,33:52:99:985,0,573 0/1:55,67:122:99:1913,0,1686 0/1:66,60:126:99:1762,0,2130 0/1:33,55:88:99:1660,0,1074 1/1:0,82:82:99:2814,223,0 0/1:45,44:89:99:1149,0,1392 0/1:29,43:73:99:1202,0,771 0/0:53,0:53:99:0,144,1821 0/1:14,34:48:99:1006,0,382 0/0:61,0:61:99:0,162,2018 0/1:22,17:39:99:462,0,657 0/1:30,34:64:99:992,0,821 0/1:92,108:200:99:2845,0,2709 1/1:0,56:56:99:1871,156,0 0/1:37,39:76:99:1059,0,1058 1/1:0,61:61:99:2069,174,0 0/1:38,42:80:99:1120,0,972 0/0:104,0:104:99:0,259,3308 0/1:49,61:111:99:1661,0,1361 0/1:41,56:97:99:1529,0,1159 0/1:70,72:142:99:1992,0,2052 0/1:34,34:68:99:952,0,1018 0/0:96,0:96:99:0,250,3390 1/1:0,83:83:99:2636,211,0 1/1:0,50:51:99:1697,141,0 1/1:0,60:60:99:2055,174,0 0/1:25,30:55:99:764,0,715 0/1:25,24:49:99:616,0,753 0/1:26,32:58:99:939,0,794 1/1:0,106:107:99:3406,274,0 0/1:40,48:88:99:1206,0,1170 1/1:0,55:55:99:1888,156,0 1/1:0,54:54:99:1824,150,0 0/1:31,32:63:99:848,0,913 0/1:32,60:92:99:1648,0,782 1/1:0,48:48:99:1624,138,0 0/0:57,1:58:99:0,130,2005 0/1:35,32:68:99:942,0,1015 1/1:1,38:39:73.53:1281,74,0 0/1:27,26:53:99:756,0,760 12 66696547 . G A 103.65 . 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C G 65.86 . 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G C 81.61 . 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C A 1050.49 . 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C G 899.64 . 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C T 1351.02 . 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G A 24057.02 . 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A G 100921.12 . 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G T 1817.38 . AC=2;AF=0.024;AN=84;BaseQRankSum=-9.471;DP=5168;DS;Dels=0.00;FS=0.455;HRun=0;HaplotypeScore=2.0314;InbreedingCoeff=-0.0244;MQ=59.46;MQ0=0;MQRankSum=-0.089;QD=11.08;ReadPosRankSum=-0.109 GT:AD:DP:GQ:PL 0/0:99,0:99:99:0,280,3518 0/1:54,40:94:99:1126,0,1642 0/1:43,27:70:99:754,0,1262 0/0:221,0:222:99:0,620,8221 0/0:225,0:225:99:0,632,8457 0/0:185,0:185:99:0,509,6788 0/0:154,0:154:99:0,427,5689 0/0:170,0:170:99:0,479,6306 0/0:97,0:98:99:0,262,3343 0/0:76,0:76:99:0,214,2706 0/0:83,0:83:99:0,247,3096 0/0:97,0:97:99:0,280,3515 0/0:76,0:76:99:0,220,2789 0/0:94,0:94:99:0,268,3367 0/0:250,0:250:99:0,692,8648 0/0:92,0:92:99:0,262,3261 0/0:103,0:103:99:0,295,3690 0/0:93,0:93:99:0,265,3299 0/0:155,0:155:99:0,421,5229 0/0:157,0:157:99:0,421,5322 0/0:141,1:142:99:0,385,4828 0/0:81,0:81:99:0,235,2918 0/0:226,0:226:99:0,623,8334 0/0:169,0:169:99:0,454,6027 0/0:186,1:187:99:0,509,6860 0/0:170,0:170:99:0,457,6081 0/0:60,0:60:99:0,166,2105 0/0:86,0:86:99:0,238,2974 0/0:90,0:90:99:0,262,3273 0/0:107,0:107:99:0,295,3727 0/0:79,0:79:99:0,229,2819 0/0:167,0:167:99:0,448,5788 0/0:104,1:105:99:0,259,3541 0/0:95,0:95:99:0,277,3466 0/0:91,0:91:99:0,262,3271 0/0:113,0:113:99:0,313,3981 0/0:127,1:128:99:0,323,4357 0/0:96,0:96:99:0,271,3395 0/0:79,0:79:99:0,223,2802 0/0:112,0:112:99:0,319,4017 0/0:87,0:87:99:0,253,3187 0/0:104,0:105:99:0,292,3622 12 69744014 . C A 14132.81 . 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T C 1034.72 . AC=2;AF=0.024;AN=84;BaseQRankSum=7.053;DP=1591;Dels=0.00;FS=8.181;HRun=0;HaplotypeScore=0.5359;InbreedingCoeff=-0.0244;MQ=59.32;MQ0=0;MQRankSum=0.151;QD=13.80;ReadPosRankSum=-0.218 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,129,1591 0/0:37,0:37:99:0,102,1265 0/0:20,0:20:54.17:0,54,677 0/1:23,16:39:99:495,0,651 0/1:16,20:36:99:602,0,476 0/0:38,0:38:99:0,102,1306 0/0:43,0:43:99:0,108,1425 0/0:51,0:51:99:0,120,1567 0/0:34,0:34:99:0,99,1198 0/0:29,0:29:81.25:0,81,989 0/0:42,0:42:99:0,120,1480 0/0:40,0:40:99:0,111,1373 0/0:35,0:35:96.28:0,96,1183 0/0:25,0:25:72.22:0,72,883 0/0:109,0:109:99:0,292,3571 0/0:24,0:24:72.22:0,72,868 0/0:31,0:31:87.27:0,87,1069 0/0:29,0:29:81.25:0,81,986 0/0:45,0:46:99:0,123,1557 0/0:52,0:52:99:0,144,1772 0/0:43,0:43:99:0,117,1458 0/0:46,0:46:99:0,117,1442 0/0:48,0:48:99:0,132,1672 0/0:35,0:35:90.28:0,90,1152 0/0:31,0:31:87.28:0,87,1106 0/0:45,0:45:99:0,117,1501 0/0:21,0:21:57.18:0,57,707 0/0:37,0:37:99:0,105,1280 0/0:17,0:17:51.16:0,51,617 0/0:37,0:37:99:0,99,1236 0/0:33,0:33:90.27:0,90,1116 0/0:66,0:66:99:0,178,2216 0/0:30,0:30:87.27:0,87,1061 0/0:25,0:25:69.22:0,69,861 0/0:43,0:43:99:0,117,1444 0/0:38,0:38:99:0,108,1338 0/0:46,0:46:99:0,111,1431 0/0:31,0:31:90.26:0,90,1084 0/0:25,0:25:72.21:0,72,868 0/0:26,0:26:75.23:0,75,922 0/0:30,0:30:84.26:0,84,1035 0/0:31,0:31:90.28:0,90,1108 12 70088219 . GT G 214.73 . 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G A 9241.72 . AC=12;AF=0.143;AN=84;BaseQRankSum=8.229;DP=2429;Dels=0.00;FS=1.830;HRun=0;HaplotypeScore=1.5568;InbreedingCoeff=0.0278;MQ=59.05;MQ0=0;MQRankSum=0.486;QD=16.59;ReadPosRankSum=-0.325 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,162,1823 0/1:28,27:55:99:791,0,747 0/1:17,17:34:99:522,0,431 0/0:90,0:90:99:0,214,2780 0/0:59,0:59:99:0,159,2033 0/1:26,30:56:99:873,0,779 0/0:58,0:58:99:0,156,1941 1/1:0,58:58:99:1819,147,0 0/0:47,0:47:99:0,129,1468 0/0:33,0:33:93.25:0,93,1063 0/0:45,1:46:98.37:0,98,1442 0/1:17,32:49:99:869,0,456 0/0:47,0:47:99:0,123,1398 0/1:22,15:37:99:440,0,587 0/0:140,0:140:99:0,385,4451 0/0:47,0:47:99:0,126,1452 0/0:51,1:53:99:0,111,1575 0/1:24,20:44:99:594,0,652 0/0:97,0:98:99:0,265,2977 0/1:34,45:79:99:1316,0,819 0/0:88,0:88:99:0,256,2898 0/0:62,0:62:99:0,165,1906 0/0:89,0:89:99:0,232,2973 0/0:46,0:46:99:0,123,1561 0/0:59,0:59:99:0,156,1985 0/0:36,0:36:93.28:0,93,1153 0/1:29,17:46:99:453,0,797 0/0:70,0:70:99:0,193,2193 0/1:12,22:34:99:670,0,315 0/0:59,0:59:99:0,159,1839 0/0:31,0:31:84.23:0,84,967 0/0:87,0:87:99:0,238,2753 0/1:32,33:65:99:896,0,842 0/0:38,0:38:99:0,111,1261 0/0:51,0:51:99:0,147,1684 0/0:43,0:43:99:0,117,1316 0/0:77,0:77:99:0,202,2336 0/0:51,0:51:99:0,132,1564 0/0:53,0:53:99:0,147,1680 0/0:60,0:60:99:0,162,1887 0/0:45,0:45:99:0,123,1406 0/0:50,1:51:99:0,108,1538 12 70928724 . A G 113278.96 . AC=82;AF=0.976;AN=84;BaseQRankSum=6.965;DP=3421;Dels=0.00;FS=1.379;HRun=1;HaplotypeScore=1.6076;InbreedingCoeff=-0.0244;MQ=59.27;MQ0=0;MQRankSum=-1.528;QD=33.11;ReadPosRankSum=0.303 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2626,211,0 1/1:0,58:58:99:2073,169,0 1/1:0,61:61:99:2058,165,0 1/1:0,84:84:99:2756,205,0 1/1:0,87:87:99:3027,229,0 1/1:0,81:81:99:2872,214,0 1/1:0,57:57:99:2005,150,0 1/1:0,58:58:99:1988,147,0 1/1:0,71:71:99:2435,196,0 1/1:0,65:65:99:2185,175,0 1/1:0,74:74:99:2522,202,0 1/1:0,76:76:99:2614,211,0 1/1:0,83:83:99:2688,214,0 1/1:0,74:74:99:2588,208,0 1/1:0,240:241:99:7790,623,0 1/1:0,57:57:99:1973,159,0 1/1:0,82:82:99:2785,223,0 1/1:0,69:69:99:2361,193,0 1/1:0,139:139:99:4501,373,0 1/1:0,139:139:99:4695,373,0 1/1:0,123:123:99:4076,328,0 1/1:0,105:105:99:3461,274,0 1/1:0,98:98:99:3503,262,0 1/1:0,67:67:99:2288,169,0 1/1:0,55:55:99:1961,147,0 1/1:0,55:55:99:1821,135,0 1/1:0,52:52:99:1844,150,0 1/1:0,77:77:99:2518,205,0 1/1:0,68:68:99:2415,193,0 1/1:0,71:71:99:2382,193,0 1/1:0,49:49:99:1662,135,0 1/1:0,109:109:99:3677,289,0 1/1:0,99:99:99:3415,274,0 1/1:0,55:55:99:2008,162,0 1/1:0,56:56:99:1956,156,0 1/1:0,80:80:99:2797,232,0 1/1:0,116:116:99:3888,316,0 1/1:0,67:67:99:2277,181,0 1/1:0,69:69:99:2376,190,0 0/1:39,32:71:99:872,0,1150 1/1:0,64:64:99:2113,172,0 0/1:39,46:85:99:1427,0,1096 12 70949014 . G A 657.66 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.310;DP=2367;Dels=0.00;FS=1.025;HRun=1;HaplotypeScore=0.5302;InbreedingCoeff=-0.0120;MQ=59.48;MQ0=0;MQRankSum=-0.161;QD=15.66;ReadPosRankSum=-0.931 GT:AD:DP:GQ:PL 0/0:38,0:39:99:0,108,1329 0/0:39,0:39:99:0,114,1406 0/0:38,0:38:99:0,108,1352 0/0:89,0:89:99:0,256,3387 0/0:89,0:89:99:0,253,3381 0/0:77,1:78:99:0,187,2932 0/0:62,0:62:99:0,181,2418 0/0:84,0:84:99:0,250,3330 0/0:43,0:43:99:0,123,1489 0/0:33,0:34:96.29:0,96,1185 0/0:43,0:43:99:0,123,1512 0/0:44,0:44:99:0,126,1570 0/0:42,0:42:99:0,114,1414 0/0:39,0:39:99:0,111,1394 0/0:133,0:133:99:0,373,4631 0/0:39,0:39:99:0,111,1360 0/0:46,0:46:99:0,129,1606 0/0:48,0:48:99:0,138,1708 0/0:73,0:73:99:0,202,2487 0/0:66,1:67:99:0,184,2298 0/0:71,0:72:99:0,205,2497 0/0:49,0:49:99:0,141,1736 0/0:102,0:102:99:0,304,4078 0/0:74,0:74:99:0,214,2879 0/0:83,0:83:99:0,244,3261 0/0:61,0:61:99:0,181,2403 0/0:48,0:48:99:0,138,1714 0/0:42,0:42:99:0,120,1468 0/1:18,24:42:99:704,0,525 0/0:36,0:36:99:0,105,1317 0/0:42,0:42:99:0,117,1438 0/0:73,0:73:99:0,199,2479 0/0:60,0:60:99:0,169,2115 0/0:42,0:42:99:0,126,1555 0/0:41,0:41:99:0,114,1410 0/0:51,0:51:99:0,153,1849 0/0:78,1:79:99:0,184,2604 0/0:47,0:47:99:0,141,1721 0/0:43,0:43:99:0,120,1501 0/0:30,0:30:84.26:0,84,1045 0/0:41,0:41:99:0,117,1444 0/0:40,0:40:99:0,117,1456 12 70983895 . A C 38267.27 . 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T C 322.46 . AC=7;AF=0.083;AN=84;BaseQRankSum=-23.675;DP=5688;DS;Dels=0.00;FS=2481.412;HRun=2;HaplotypeScore=4.1071;InbreedingCoeff=-0.1176;MQ=59.05;MQ0=0;MQRankSum=-0.933;QD=0.33;ReadPosRankSum=-24.480 GT:AD:DP:GQ:PL 0/0:53,27:80:83.37:0,83,1588 0/0:63,43:106:3.63:0,4,1780 0/0:56,39:95:29.83:0,30,1804 0/0:133,61:194:99:0,169,4296 0/0:112,63:175:99:0,218,3684 0/0:107,51:158:99:0,205,3659 0/0:91,51:143:99:0,173,3063 0/0:105,48:153:99:0,242,3484 0/0:90,39:129:99:0,153,2848 0/0:65,38:103:76.85:0,77,1978 0/0:62,41:104:4.91:0,5,1915 0/0:68,33:101:4.50:0,4,1914 0/0:66,31:98:90.65:0,91,2059 0/0:69,39:108:72.53:0,73,2062 0/1:143,107:250:38.33:38,0,4339 0/0:61,22:83:99:0,140,1955 0/0:71,50:121:30.52:0,31,2133 0/1:63,48:111:99:104,0,1842 0/0:148,71:220:80.55:0,81,4648 0/0:130,76:208:99:0,328,4053 0/0:136,89:225:78.72:0,79,3987 0/0:96,55:151:99:0,149,2891 0/0:132,72:204:99:0,227,4288 0/0:98,42:140:99:0,258,3331 0/0:115,43:158:99:0,326,3936 0/0:71,46:117:99:0,164,2426 0/0:52,34:86:44.53:0,45,1580 0/0:73,40:113:14.14:0,14,2193 0/0:53,31:84:90.63:0,91,1627 0/0:75,35:110:99:0,178,2403 0/1:62,44:106:39.64:40,0,1911 0/0:136,92:230:99:0,192,3962 0/0:108,59:167:99:0,130,3316 0/0:70,41:111:74.67:0,75,2210 0/0:61,32:93:13.75:0,14,1812 0/0:86,40:126:1.68:3,0,2561 0/1:112,63:175:63.61:64,0,3090 0/0:73,41:114:99:0,112,2238 0/1:71,44:115:10.63:11,0,2122 0/1:83,39:122:45.54:46,0,2608 0/0:60,33:93:2.68:0,3,1767 0/1:66,42:108:99:130,0,2040 12 70989977 . T C 10315.84 . 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T C 13330.46 . AC=33;AF=0.393;AN=84;BaseQRankSum=-18.607;DP=1266;Dels=0.00;FS=9.561;HRun=1;HaplotypeScore=0.4117;InbreedingCoeff=-0.4474;MQ=59.06;MQ0=0;MQRankSum=0.360;QD=14.75;ReadPosRankSum=-5.865 GT:AD:DP:GQ:PL 0/1:14,6:20:99:142,0,453 0/1:13,12:25:99:303,0,399 0/1:11,12:23:99:320,0,331 0/0:44,0:44:99:0,132,1608 0/0:46,0:46:99:0,135,1700 1/1:0,48:48:99:1637,141,0 0/1:28,19:47:99:525,0,937 0/1:20,19:39:99:516,0,630 0/1:7,14:21:99:412,0,201 0/1:11,12:23:99:335,0,338 0/0:20,0:20:60.19:0,60,742 0/1:12,15:27:99:401,0,365 0/0:15,0:15:45.14:0,45,548 0/1:13,6:19:99:150,0,400 0/1:35,38:73:99:999,0,1011 0/1:10,7:17:99:184,0,297 0/1:8,19:27:99:509,0,215 0/1:10,7:17:99:185,0,258 0/1:26,22:48:99:513,0,783 0/1:26,26:52:99:661,0,739 0/1:20,17:37:99:466,0,589 0/1:14,12:26:99:300,0,439 0/0:51,0:51:99:0,153,1890 0/1:15,13:28:99:383,0,436 0/0:53,0:53:99:0,159,1964 0/1:17,24:41:99:719,0,494 0/1:8,9:17:99:241,0,232 0/0:29,0:29:84.26:0,84,1035 1/1:0,18:18:54.13:582,54,0 0/1:8,9:17:99:237,0,244 0/1:6,9:15:99:241,0,184 0/0:27,0:27:78.21:0,78,949 0/0:24,0:24:72.22:0,72,882 0/1:4,13:17:99:335,0,105 0/1:15,13:28:99:356,0,452 0/1:17,6:23:99:104,0,557 0/1:20,26:46:99:710,0,593 0/1:9,9:18:99:220,0,280 0/0:35,0:35:96.30:0,96,1187 0/1:12,14:26:99:382,0,364 0/0:18,0:18:54.17:0,54,666 0/1:11,10:21:99:264,0,345 12 71139639 . G A 577.42 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.069;DP=2306;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7848;InbreedingCoeff=-0.0120;MQ=59.34;MQ0=0;MQRankSum=-0.383;QD=14.44;ReadPosRankSum=-0.769 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,162,2032 0/0:60,0:60:99:0,175,2201 0/0:45,0:45:99:0,123,1554 0/0:73,0:73:99:0,202,2715 0/0:74,0:74:99:0,208,2783 0/0:70,0:70:99:0,193,2621 0/0:52,0:52:99:0,138,1848 0/0:70,0:70:99:0,190,2524 0/0:42,0:42:99:0,117,1507 0/0:44,0:44:99:0,126,1600 0/0:41,0:41:99:0,120,1491 0/0:49,0:49:99:0,138,1762 0/0:37,0:37:99:0,108,1355 0/0:47,0:48:99:0,135,1720 0/0:176,1:178:99:0,451,5675 0/0:33,0:34:96.30:0,96,1198 0/0:39,0:39:99:0,114,1437 0/1:18,22:40:99:624,0,571 0/0:53,0:53:99:0,138,1716 0/0:77,0:77:99:0,211,2699 0/0:57,0:57:99:0,153,1942 0/0:44,0:44:99:0,123,1568 0/0:91,0:91:99:0,259,3449 0/0:57,0:57:99:0,159,2103 0/0:74,0:74:99:0,205,2727 0/0:59,0:59:99:0,162,2143 0/0:33,0:33:99:0,99,1243 0/0:40,0:40:99:0,117,1425 0/0:40,0:40:99:0,117,1479 0/0:52,0:52:99:0,150,1885 0/0:38,0:38:99:0,108,1366 0/0:65,0:65:99:0,169,2193 0/0:30,0:30:87.28:0,87,1122 0/0:51,0:51:99:0,147,1856 0/0:38,0:39:99:0,108,1374 0/0:48,0:48:99:0,126,1589 0/0:61,0:61:99:0,168,2082 0/0:55,0:55:99:0,159,1976 0/0:49,0:49:99:0,141,1759 0/0:43,0:43:99:0,117,1469 0/0:45,0:45:99:0,132,1686 0/0:49,1:50:99:0,105,1698 12 71139664 . T C 49382.64 . AC=60;AF=0.714;AN=84;BaseQRankSum=7.956;DP=2054;Dels=0.00;FS=8.600;HRun=0;HaplotypeScore=0.9507;InbreedingCoeff=0.1833;MQ=59.36;MQ0=0;MQRankSum=-1.024;QD=27.45;ReadPosRankSum=-1.686 GT:AD:DP:GQ:PL 0/1:32,26:58:99:724,0,972 1/1:0,64:64:99:2249,181,0 1/1:0,34:34:99:1226,99,0 0/0:71,0:71:99:0,202,2447 0/1:38,30:68:99:921,0,1187 0/1:26,34:60:99:1041,0,813 0/0:50,0:50:99:0,141,1805 0/1:28,29:57:99:904,0,846 1/1:0,35:35:96.30:1212,96,0 1/1:0,30:31:81.25:1014,81,0 0/1:15,17:32:99:518,0,438 0/1:13,28:41:99:905,0,329 1/1:0,35:35:99:1268,99,0 0/0:39,1:40:88.68:0,89,1338 1/1:0,125:125:99:4396,352,0 1/1:0,35:35:99:1242,102,0 1/1:1,43:44:86.38:1469,86,0 1/1:0,37:37:99:1321,105,0 1/1:0,49:50:99:1584,126,0 1/1:0,61:61:99:2187,178,0 1/1:0,57:57:99:2006,162,0 1/1:0,36:36:99:1254,102,0 0/1:43,34:77:99:1132,0,1375 0/1:27,25:52:99:796,0,802 1/1:0,48:48:99:1871,144,0 0/1:21,22:43:99:719,0,613 0/1:21,24:45:99:702,0,573 1/1:0,46:46:99:1676,135,0 0/1:11,17:28:99:525,0,325 0/0:57,0:57:99:0,159,1922 0/0:37,0:37:99:0,105,1266 1/1:0,55:55:99:1990,159,0 0/1:21,17:39:99:502,0,593 1/1:0,44:44:99:1542,123,0 1/1:0,37:37:99:1351,108,0 1/1:0,44:44:99:1587,126,0 1/1:0,56:57:99:1899,153,0 0/1:29,22:51:99:585,0,913 0/1:15,28:44:99:851,0,424 1/1:0,36:36:93.30:1189,93,0 1/1:0,42:42:99:1437,117,0 1/1:1,49:51:96.27:1589,96,0 12 71523134 . A C 15498.58 . AC=29;AF=0.345;AN=84;BaseQRankSum=22.705;DP=1398;Dels=0.00;FS=8.821;HRun=0;HaplotypeScore=0.4174;InbreedingCoeff=-0.0007;MQ=58.87;MQ0=0;MQRankSum=1.171;QD=18.19;ReadPosRankSum=0.287 GT:AD:DP:GQ:PL 0/1:14,18:32:99:529,0,394 1/1:0,35:35:96.28:1228,96,0 0/1:16,15:31:99:459,0,408 0/1:14,25:39:99:793,0,317 1/1:0,28:28:75.24:1030,75,0 0/0:41,0:41:99:0,108,1416 0/0:31,0:31:81.25:0,81,1028 0/1:27,19:46:99:497,0,806 0/0:29,0:29:78.24:0,78,952 0/1:13,10:23:99:290,0,330 0/1:13,16:29:99:465,0,336 0/0:35,0:35:84.26:0,84,1052 0/0:39,0:39:99:0,105,1288 0/0:31,0:31:81.24:0,81,1001 0/1:38,60:98:99:1601,0,911 0/0:13,0:13:33.10:0,33,412 0/1:24,17:41:99:452,0,624 0/0:27,1:28:33.65:0,34,837 0/1:22,20:42:99:537,0,590 0/1:21,19:40:99:554,0,576 0/0:41,0:41:96.30:0,96,1238 0/1:8,11:19:99:312,0,207 0/0:26,0:26:69.22:0,69,864 1/1:0,25:25:66.22:922,66,0 1/1:0,27:27:72.24:1005,72,0 0/1:20,24:44:99:799,0,490 0/0:26,0:26:69.19:0,69,838 0/0:35,0:35:90.28:0,90,1109 0/0:27,0:27:66.20:0,66,820 0/0:28,0:28:72.19:0,72,876 0/1:8,13:21:99:446,0,204 0/1:25,19:44:99:517,0,712 0/0:31,0:31:78.24:0,78,983 0/0:25,0:25:69.21:0,69,853 0/1:15,13:28:99:383,0,413 0/1:16,19:35:99:526,0,427 0/1:13,12:25:99:307,0,272 0/1:26,20:46:99:530,0,755 0/0:34,0:34:99:0,102,1239 0/1:14,11:25:99:298,0,388 0/0:25,1:26:36.66:0,37,849 1/1:0,29:29:78.25:1019,78,0 12 71533534 . C G 66872.31 . AC=29;AF=0.345;AN=84;BaseQRankSum=-0.608;DP=6778;DS;Dels=0.00;FS=50.411;HRun=0;HaplotypeScore=3.2732;InbreedingCoeff=-0.0006;MQ=59.50;MQ0=0;MQRankSum=0.471;QD=17.58;ReadPosRankSum=1.293 GT:AD:DP:GQ:PL 0/1:87,47:134:99:1327,0,2494 1/1:0,111:111:99:3987,328,0 0/1:64,73:137:99:2180,0,1966 0/1:108,76:184:99:2413,0,3619 1/1:0,156:156:99:6036,451,0 0/0:250,0:250:99:0,725,9651 0/0:214,0:214:99:0,617,8216 0/1:108,69:177:99:2083,0,3591 0/0:157,0:157:99:0,436,5528 0/1:89,64:153:99:1902,0,2679 0/1:73,45:119:99:1226,0,2366 0/0:163,0:163:99:0,469,5934 0/0:135,0:135:99:0,379,4723 0/0:132,0:132:99:0,376,4693 0/1:131,113:244:99:3389,0,3921 0/0:138,0:138:99:0,382,4825 0/1:77,53:130:99:1552,0,2334 0/0:148,1:149:99:0,370,5105 0/1:122,101:223:99:2852,0,3435 0/1:124,80:204:99:2414,0,3748 0/0:238,0:238:99:0,668,8110 0/1:85,57:142:99:1644,0,2577 0/0:250,0:250:99:0,731,9810 1/1:0,145:145:99:5674,421,0 1/1:1,157:158:99:6182,440,0 0/1:76,69:145:99:2196,0,2462 0/0:111,0:111:99:0,301,3834 0/0:139,0:140:99:0,385,4863 0/0:149,0:149:99:0,430,5465 0/0:140,0:140:99:0,388,4899 0/1:77,62:139:99:1783,0,2474 0/1:107,92:199:99:2876,0,3255 0/0:160,0:160:99:0,454,5710 0/0:147,0:147:99:0,430,5341 0/1:77,52:129:99:1460,0,2413 0/1:73,60:133:99:1743,0,2221 0/1:114,91:205:99:2394,0,3275 0/1:64,55:119:99:1601,0,1988 0/0:147,1:148:99:0,393,5330 0/1:80,84:165:99:2507,0,2213 0/0:152,2:154:99:0,359,5343 1/1:1,151:152:99:5451,430,0 12 71537951 . C T 1635.86 . 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T C 9068.95 . 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A G 34691.52 . 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G A 774.55 . 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G A 740.12 . 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A G 9139.40 . 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C T 543.16 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.960;DP=1056;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.2245;InbreedingCoeff=-0.0248;MQ=59.42;MQ0=0;MQRankSum=0.966;QD=11.08;ReadPosRankSum=-0.135 GT:AD:DP:GQ:PL 0/0:25,0:25:66.21:0,66,872 0/0:25,0:25:63.20:0,63,818 0/0:30,0:30:84.26:0,84,1066 0/0:8,0:8:24.08:0,24,322 0/0:11,0:11:27.09:0,27,385 0/0:11,0:11:27.09:0,27,381 0/0:19,0:19:54.17:0,54,725 0/0:15,0:15:42.14:0,42,586 0/0:28,0:28:69.23:0,69,926 0/0:28,0:28:75.22:0,75,959 0/0:26,0:26:78.25:0,78,996 0/0:28,0:28:72.23:0,72,939 0/0:28,0:28:81.22:0,81,991 0/0:17,0:17:45.14:0,45,582 0/0:62,0:62:99:0,150,1991 0/0:18,0:18:45.14:0,45,592 0/0:24,0:24:66.20:0,66,825 0/0:19,0:19:57.16:0,57,707 0/0:33,0:33:93.28:0,93,1150 0/0:28,0:28:75.24:0,75,978 0/0:41,0:41:99:0,105,1342 0/0:22,0:22:57.18:0,57,737 0/0:20,0:20:60.20:0,60,822 0/0:14,0:14:36.12:0,36,486 0/0:14,0:14:39.13:0,39,535 0/0:10,0:10:30.10:0,30,402 0/0:23,0:23:66.17:0,66,822 0/0:34,0:34:96.29:0,96,1214 0/0:35,0:35:90.29:0,90,1171 0/0:25,0:25:72.23:0,72,934 0/0:26,0:26:75.24:0,75,977 0/0:27,0:27:69.22:0,69,919 0/0:21,0:21:54.17:0,54,712 0/0:31,0:31:84.27:0,84,1106 0/0:26,0:26:72.23:0,72,947 0/0:54,0:54:99:0,132,1757 0/0:23,0:23:57.18:0,57,735 0/0:19,0:19:57.18:0,57,725 0/1:15,11:26:99:300,0,498 0/0:18,1:19:15.91:0,16,595 0/0:40,0:40:99:0,111,1435 0/1:13,10:23:99:306,0,377 12 75698584 . T C 1008.86 . AC=1;AF=0.012;AN=84;BaseQRankSum=6.650;DP=2129;Dels=0.00;FS=4.718;HRun=0;HaplotypeScore=0.4721;InbreedingCoeff=-0.0120;MQ=59.45;MQ0=0;MQRankSum=-0.150;QD=15.52;ReadPosRankSum=-0.566 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,105,1272 0/0:43,0:43:99:0,120,1478 0/0:36,0:36:99:0,99,1216 0/0:64,0:64:99:0,184,2282 0/0:65,0:65:99:0,184,2308 0/0:64,0:64:99:0,175,2242 0/0:56,0:56:99:0,153,1943 0/1:33,32:65:99:1055,0,903 0/0:41,0:41:99:0,111,1362 0/0:39,0:39:99:0,108,1332 0/0:31,0:31:87.27:0,87,1081 0/0:40,0:40:99:0,117,1443 0/0:30,0:30:87.27:0,87,1066 0/0:32,0:32:90.27:0,90,1099 0/0:132,0:132:99:0,331,4154 0/0:31,0:31:84.26:0,84,1035 0/0:40,0:40:99:0,114,1398 0/0:57,0:57:99:0,159,1952 0/0:52,0:52:99:0,135,1695 0/0:54,0:54:99:0,144,1809 0/0:57,0:57:99:0,163,2000 0/0:33,0:33:87.27:0,87,1075 0/0:89,0:89:99:0,244,3080 0/0:64,0:64:99:0,166,2140 0/0:82,0:82:99:0,217,2748 0/0:58,0:58:99:0,163,2057 0/0:32,0:32:90.28:0,90,1114 0/0:56,0:56:99:0,153,1876 0/0:34,0:34:93.29:0,93,1148 0/0:42,0:42:99:0,117,1461 0/0:45,0:45:99:0,123,1523 0/0:56,0:56:99:0,147,1850 0/0:50,0:50:99:0,132,1651 0/0:44,0:44:99:0,120,1504 0/0:30,0:30:90.28:0,90,1094 0/0:52,0:52:99:0,144,1797 0/0:75,0:75:99:0,205,2524 0/0:47,0:47:99:0,138,1689 0/0:35,0:35:99:0,99,1209 0/0:48,0:48:99:0,135,1675 0/0:39,0:40:99:0,105,1300 0/0:53,0:53:99:0,153,1895 12 75785047 . G A 889.80 . 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C T 25554.16 . 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T C 780.02 . 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C G 2814.80 . 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A G 2241.64 . AC=7;AF=0.083;AN=84;BaseQRankSum=6.127;DP=721;Dels=0.00;FS=2.431;HRun=0;HaplotypeScore=0.2900;InbreedingCoeff=-0.0915;MQ=59.36;MQ0=0;MQRankSum=0.654;QD=16.98;ReadPosRankSum=-0.426 GT:AD:DP:GQ:PL 0/0:13,0:13:36.11:0,36,447 0/0:5,0:5:15.05:0,15,190 0/0:15,0:15:45.14:0,45,556 0/0:18,0:18:45.15:0,45,595 0/0:17,0:17:45.15:0,45,595 0/0:27,0:27:81.26:0,81,1062 0/0:11,0:11:33.10:0,33,418 0/0:23,0:23:60.19:0,60,778 0/0:15,0:15:45.14:0,45,564 0/0:8,0:8:24.08:0,24,299 0/0:14,0:14:42.13:0,42,527 0/0:13,0:13:39.12:0,39,481 0/0:10,0:10:30.09:0,30,373 0/0:11,0:11:33.10:0,33,412 0/1:17,18:35:99:530,0,492 0/1:5,7:12:99:228,0,147 0/0:21,0:21:60.19:0,60,753 0/0:13,0:13:39.12:0,39,473 0/0:33,0:33:90.29:0,90,1134 0/0:24,0:24:69.22:0,69,871 0/0:32,0:32:90.28:0,90,1131 0/0:14,0:14:42.13:0,42,527 0/1:10,9:19:99:307,0,331 0/0:14,0:14:39.13:0,39,513 0/0:15,0:15:42.13:0,42,542 0/0:14,0:14:39.12:0,39,502 0/1:6,6:12:99:197,0,193 0/0:21,0:21:60.19:0,60,753 0/1:5,8:14:99:269,0,120 0/0:12,0:12:33.10:0,33,405 0/0:14,0:14:42.13:0,42,526 0/0:35,0:35:99:0,99,1239 0/0:17,0:17:48.15:0,48,595 0/0:12,0:12:36.11:0,36,448 0/0:12,0:12:33.11:0,33,422 0/0:16,0:16:45.14:0,45,567 0/1:8,15:24:99:482,0,225 0/0:18,0:18:51.16:0,51,635 0/1:6,10:16:99:343,0,166 0/0:16,0:16:48.15:0,48,602 0/0:18,0:18:54.14:0,54,645 0/0:18,0:18:48.15:0,48,598 12 77421778 . A C 810.64 . 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TA T 12915.58 . AC=62;AF=0.738;AN=84;BaseQRankSum=17.429;DP=903;FS=2.284;HRun=10;HaplotypeScore=53.9201;InbreedingCoeff=-0.1185;MQ=59.49;MQ0=0;MQRankSum=0.859;QD=15.00;ReadPosRankSum=0.214 GT:AD:DP:GQ:PL 0/1:11,6:17:99:111,0,254 0/1:10,6:16:99:140,0,190 1/1:1,13:15:41.03:345,41,0 0/1:8,7:15:99:146,0,130 1/1:3,19:22:56.97:493,57,0 1/1:3,14:17:41.98:365,42,0 0/1:13,9:23:99:152,0,333 1/1:3,7:23:45.53:216,46,0 1/1:1,13:14:38.99:339,39,0 0/1:17,7:24:99:116,0,432 1/1:6,13:19:41.97:362,42,0 1/1:5,20:25:32.80:514,33,0 1/1:9,20:29:68.95:592,69,0 0/1:10,9:19:99:186,0,184 1/1:10,60:70:99:1498,147,0 0/1:4,3:7:21.20:66,0,21 0/1:12,10:24:99:189,0,325 1/1:5,18:23:56.97:495,57,0 1/1:7,19:26:56.97:494,57,0 1/1:5,23:28:71.96:625,72,0 1/1:4,22:26:65.98:573,66,0 1/1:4,10:14:32.98:285,33,0 0/1:14,11:26:99:218,0,322 0/1:20,8:28:99:142,0,397 0/1:11,6:17:99:114,0,218 0/0:22,1:21:31.09:0,31,568 1/1:0,9:9:26.99:234,27,0 0/1:14,10:24:99:203,0,217 1/1:8,11:19:2.79:253,3,0 0/1:12,9:21:99:235,0,145 1/1:6,13:19:41.99:365,42,0 0/1:12,4:16:71.06:71,0,199 0/0:18,0:19:38.94:0,39,413 0/1:14,15:29:99:316,0,251 0/1:15,7:22:99:177,0,245 0/1:10,10:20:99:235,0,148 1/1:6,22:28:59.96:521,60,0 1/1:5,12:17:41.98:364,42,0 1/1:2,11:14:35.03:292,35,0 1/1:4,11:15:32.99:287,33,0 1/1:5,12:17:44.96:385,45,0 0/1:14,10:24:99:200,0,268 12 80014907 . A T 153897.57 . 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TA T 151.76 . 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A T 400.74 . AC=21;AF=0.250;AN=84;BaseQRankSum=-4.486;DP=434;Dels=0.02;FS=55.104;HRun=13;HaplotypeScore=0.4321;InbreedingCoeff=-0.3591;MQ=58.94;MQ0=0;MQRankSum=-1.840;QD=1.73;ReadPosRankSum=-2.175 GT:AD:DP:GQ:PL 0/0:6,2:8:11.52:0,12,121 0/1:3,1:4:22.33:22,0,81 0/1:6,2:8:6.64:7,0,129 0/1:15,4:19:23.16:23,0,295 0/0:16,1:17:11.38:0,11,300 0/1:10,3:13:15.40:15,0,157 0/0:9,3:12:21.06:0,21,237 0/0:15,2:17:17.38:0,17,403 0/0:9,1:10:21.04:0,21,226 0/1:6,1:7:9.63:10,0,140 0/1:5,1:6:13.52:14,0,142 0/1:4,5:9:94.24:94,0,112 0/0:8,0:8:15.03:0,15,162 0/0:5,1:6:9.02:0,9,97 0/1:33,4:37:5.89:6,0,826 0/0:6,0:6:15.04:0,15,166 0/0:3,0:3:9:0,9,89 0/1:6,2:8:16.62:17,0,94 0/1:8,4:12:43.34:43,0,207 0/1:9,2:11:21.34:21,0,167 0/0:7,1:8:12.04:0,12,139 0/0:7,2:9:14.52:0,15,140 0/1:12,6:18:60.36:60,0,260 0/1:8,4:12:62.33:62,0,216 0/1:12,4:16:38.58:39,0,228 0/0:12,3:15:2.72:1,0,255 0/0:3,1:4:9.03:0,9,103 0/0:13,2:15:28.30:0,28,299 0/1:3,1:4:16.71:17,0,36 0/0:1,2:3:3.01:0,3,36 0/1:2,3:5:16.69:17,0,19 0/0:16,4:20:17.38:0,17,380 0/1:7,1:8:20.23:20,0,109 0/1:5,2:7:21.95:22,0,110 0/0:6,1:7:12.04:0,12,142 0/0:5,2:7:12.04:0,12,141 0/1:9,1:10:12.92:13,0,222 0/0:4,4:8:5.84:0,6,40 0/1:5,1:6:18.39:18,0,121 0/1:6,2:8:23.23:23,0,87 0/0:5,1:6:9.49:0,9,98 0/0:10,0:10:24.06:0,24,274 12 80239178 . G A 640.70 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.777;DP=1558;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7527;InbreedingCoeff=-0.0244;MQ=59.27;MQ0=1;MQRankSum=-0.465;QD=12.56;ReadPosRankSum=0.154 GT:AD:DP:GQ:PL 0/0:28,0:28:78.24:0,78,974 0/0:25,0:25:66.20:0,66,826 0/0:21,0:21:57.15:0,57,711 0/0:48,0:48:99:0,129,1700 0/0:54,0:54:99:0,144,1972 0/0:48,0:48:99:0,120,1645 0/0:49,0:49:99:0,135,1836 0/0:46,0:46:99:0,132,1770 0/0:30,0:30:69.22:0,69,912 0/0:23,0:23:63.20:0,63,795 0/0:28,0:28:81.25:0,81,1001 0/0:26,0:26:69.22:0,69,877 0/0:24,0:24:66.20:0,66,822 0/0:27,0:27:78.24:0,78,964 0/0:117,1:118:99:0,268,3488 0/0:20,0:20:60.19:0,60,736 0/0:14,0:14:42.13:0,42,517 0/0:21,0:21:60.19:0,60,744 0/0:47,0:47:99:0,129,1616 0/0:68,0:68:99:0,175,2224 0/0:62,0:62:99:0,156,1989 0/0:33,0:33:93.29:0,93,1159 0/0:64,0:64:99:0,163,2203 0/0:39,0:39:99:0,105,1423 0/0:37,0:37:99:0,99,1327 0/0:47,0:48:99:0,114,1549 0/0:26,0:26:72.21:0,72,883 0/0:29,0:29:75.24:0,75,959 0/0:34,0:34:81.26:0,81,1051 0/0:18,0:18:54.17:0,54,664 0/0:31,0:31:81.25:0,81,1009 0/0:55,0:55:99:0,132,1720 0/0:39,0:39:99:0,102,1304 0/0:26,0:26:66.21:0,66,825 0/0:25,0:25:69.22:0,69,870 0/0:36,0:36:96.30:0,96,1219 0/0:67,0:68:99:0,156,2028 0/0:26,0:26:72.22:0,72,897 0/0:25,0:25:72.23:0,72,901 0/1:12,9:21:99:256,0,372 0/1:14,16:30:99:447,0,377 0/0:20,0:20:51.16:0,51,651 12 80602001 . T C 12377.98 . AC=37;AF=0.440;AN=84;BaseQRankSum=19.895;DP=991;Dels=0.00;FS=1.012;HRun=0;HaplotypeScore=1.1398;InbreedingCoeff=-0.1113;MQ=59.36;MQ0=0;MQRankSum=1.565;QD=17.53;ReadPosRankSum=-0.685 GT:AD:DP:GQ:PL 0/0:17,0:17:42.13:0,42,530 0/1:8,7:15:99:230,0,191 1/1:0,10:10:24.08:324,24,0 0/0:38,0:38:99:0,105,1269 0/1:15,21:36:99:670,0,366 0/1:21,14:35:99:419,0,581 0/1:19,12:31:99:377,0,532 0/1:26,17:43:99:478,0,655 1/1:1,31:32:51.63:979,52,0 0/1:15,10:25:99:253,0,391 0/1:9,3:12:85.63:86,0,240 0/1:14,6:20:99:176,0,386 0/0:16,0:16:42.13:0,42,511 0/1:8,4:12:99:117,0,256 0/1:37,32:69:99:861,0,839 0/1:9,4:13:99:116,0,236 0/1:5,9:14:99:270,0,142 0/0:18,0:18:45.14:0,45,560 0/0:20,0:20:54.17:0,54,664 0/0:31,0:31:69.21:0,69,866 0/1:18,16:34:99:449,0,458 0/1:11,4:15:99:110,0,342 0/0:38,0:38:90.28:0,90,1155 0/1:10,12:22:99:428,0,242 0/1:14,23:37:99:656,0,328 1/1:0,35:35:90.27:1221,90,0 0/0:11,0:11:33.10:0,33,399 0/1:9,6:15:99:154,0,254 0/0:18,0:18:54.16:0,54,644 0/0:19,0:19:48.15:0,48,599 0/0:17,0:17:48.15:0,48,592 0/0:42,0:42:99:0,105,1344 0/1:15,9:24:99:251,0,411 1/1:0,22:22:57.15:723,57,0 1/1:0,12:12:33.10:416,33,0 0/1:7,11:18:99:344,0,174 0/1:10,16:26:99:445,0,264 0/1:9,8:17:99:258,0,222 0/1:8,6:14:99:193,0,222 1/1:0,16:16:45.14:562,45,0 0/1:8,3:11:84.78:85,0,218 1/1:0,21:21:57.18:728,57,0 12 80602010 . C A 714.04 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.169;DP=927;Dels=0.00;FS=5.929;HRun=2;HaplotypeScore=1.1615;InbreedingCoeff=-0.0245;MQ=59.34;MQ0=0;MQRankSum=-0.239;QD=9.52;ReadPosRankSum=-1.583 GT:AD:DP:GQ:PL 0/0:16,0:16:42.12:0,42,523 0/0:13,0:13:30.10:0,30,403 0/0:11,0:11:27.09:0,27,353 0/0:38,0:38:99:0,102,1408 0/0:38,0:38:90.29:0,90,1252 0/1:21,14:35:99:354,0,624 0/0:31,0:31:81.26:0,81,1113 0/1:24,16:40:99:422,0,633 0/0:27,0:27:63.20:0,63,826 0/0:23,0:23:57.19:0,57,756 0/0:11,0:11:33.11:0,33,424 0/0:20,0:20:60.19:0,60,756 0/0:15,0:15:36.11:0,36,459 0/0:15,0:15:42.14:0,42,549 0/0:64,0:64:99:0,166,2163 0/0:11,0:11:30.10:0,30,390 0/0:14,0:14:36.12:0,36,472 0/0:14,0:14:39.12:0,39,480 0/0:17,0:17:48.15:0,48,622 0/0:23,0:23:57.18:0,57,740 0/0:32,0:32:90.29:0,90,1168 0/0:13,0:13:39.13:0,39,497 0/0:34,0:34:81.27:0,81,1144 0/0:21,0:21:60.20:0,60,830 0/0:34,0:34:78.26:0,78,1100 0/0:31,0:31:87.28:0,87,1188 0/0:12,0:12:30.10:0,30,395 0/0:15,0:15:42.13:0,42,533 0/0:22,0:22:66.21:0,66,838 0/0:16,0:16:42.12:0,42,526 0/0:18,0:18:51.16:0,51,640 0/0:38,0:38:96.31:0,96,1262 0/0:20,0:20:54.17:0,54,701 0/0:21,0:21:51.17:0,51,670 0/0:10,0:10:30.10:0,30,384 0/0:16,0:16:45.14:0,45,573 0/0:25,0:25:66.21:0,66,847 0/0:16,0:16:45.14:0,45,575 0/0:15,0:15:45.15:0,45,578 0/0:14,0:14:39.11:0,39,491 0/0:10,0:10:27.09:0,27,352 0/0:18,0:18:51.16:0,51,656 12 80655849 . C T 4127.94 . AC=3;AF=0.036;AN=84;BaseQRankSum=-9.900;DP=3871;Dels=0.00;FS=14.669;HRun=0;HaplotypeScore=1.1829;InbreedingCoeff=-0.0370;MQ=59.50;MQ0=1;MQRankSum=0.432;QD=12.62;ReadPosRankSum=-0.085 GT:AD:DP:GQ:PL 0/0:61,0:61:99:0,159,2011 0/0:76,0:76:99:0,211,2684 0/0:75,0:75:99:0,187,2428 0/0:154,0:154:99:0,361,4834 0/0:134,0:134:99:0,340,4545 0/0:111,0:111:99:0,298,3912 0/0:121,0:122:99:0,310,4093 0/0:124,0:124:99:0,307,4122 0/0:65,0:65:99:0,181,2322 0/0:59,0:59:99:0,156,1999 0/0:67,0:67:99:0,190,2423 0/0:66,0:66:99:0,181,2256 0/0:77,0:77:99:0,214,2648 0/0:55,0:55:99:0,153,1900 0/0:229,0:229:99:0,548,6986 0/0:27,0:27:72.19:0,72,880 0/0:67,0:67:99:0,184,2317 0/0:68,0:68:99:0,184,2318 0/1:77,68:145:99:1719,0,2144 0/1:60,51:111:99:1368,0,1745 0/0:129,0:129:99:0,331,4132 0/0:103,0:104:99:0,268,3393 0/0:162,0:162:99:0,415,5574 0/0:121,0:121:99:0,295,4006 0/0:101,0:101:99:0,250,3326 0/0:104,0:104:99:0,256,3459 0/0:42,0:42:99:0,117,1461 0/0:56,0:57:99:0,147,1896 0/0:71,0:72:99:0,193,2400 0/0:69,0:69:99:0,187,2387 0/0:81,1:82:99:0,220,2796 0/0:142,0:142:99:0,355,4571 0/0:83,0:83:99:0,220,2762 0/0:72,0:72:99:0,184,2345 0/0:66,0:66:99:0,183,2238 0/1:32,38:71:99:1041,0,816 0/0:137,0:137:99:0,340,4181 0/0:73,0:73:99:0,181,2258 0/0:81,0:81:99:0,220,2752 0/0:72,0:72:99:0,199,2459 0/0:67,0:67:99:0,169,2097 0/0:71,0:71:99:0,193,2467 12 80750659 . G A 10870.48 . AC=15;AF=0.179;AN=84;BaseQRankSum=-8.948;DP=2057;Dels=0.00;FS=4.423;HRun=1;HaplotypeScore=0.5651;InbreedingCoeff=-0.0551;MQ=59.43;MQ0=0;MQRankSum=0.380;QD=13.95;ReadPosRankSum=-1.324 GT:AD:DP:GQ:PL 0/0:39,0:39:96.30:0,96,1220 0/1:20,17:37:99:431,0,580 1/1:0,21:21:51.16:635,51,0 0/1:28,41:69:99:1150,0,735 0/1:35,40:75:99:1074,0,1041 0/0:82,0:82:99:0,211,2803 0/0:64,0:64:99:0,166,2195 0/0:70,0:70:99:0,181,2416 0/0:25,0:25:72.22:0,72,901 0/0:29,0:29:75.23:0,75,955 0/0:32,0:32:87.24:0,87,1075 0/0:49,0:49:99:0,132,1656 0/0:30,0:30:78.22:0,78,961 0/0:30,0:30:90.27:0,90,1075 0/1:77,70:147:99:1884,0,1883 0/1:9,17:26:99:534,0,211 0/0:44,0:44:99:0,108,1401 0/0:24,0:24:66.19:0,66,801 0/1:29,24:53:99:647,0,758 0/1:38,23:61:99:640,0,1000 0/0:60,0:61:99:0,153,1924 0/0:49,0:49:99:0,135,1633 0/1:43,37:80:99:1026,0,1225 0/0:63,0:63:99:0,150,2072 0/0:83,0:84:99:0,217,2898 0/0:65,1:66:99:0,137,2217 0/0:20,1:21:27.44:0,27,577 0/0:46,0:46:99:0,120,1495 0/0:23,0:23:63.20:0,63,791 0/0:42,1:43:99:0,111,1368 0/0:28,0:28:75.23:0,75,943 0/0:79,0:79:99:0,211,2595 0/0:52,0:52:99:0,132,1680 0/0:43,0:43:99:0,120,1492 0/0:26,0:26:63.19:0,63,793 0/1:17,25:42:99:759,0,499 0/1:35,24:59:99:663,0,1036 0/0:36,0:36:99:0,99,1217 0/1:20,16:36:99:425,0,562 0/1:22,19:41:99:476,0,652 0/0:40,0:40:99:0,99,1262 0/1:15,17:32:99:525,0,459 12 80761411 . G T 3529.19 . AC=15;AF=0.179;AN=84;BaseQRankSum=-13.056;DP=602;Dels=0.00;FS=0.764;HRun=3;HaplotypeScore=0.3203;InbreedingCoeff=-0.0797;MQ=59.40;MQ0=0;MQRankSum=0.097;QD=15.90;ReadPosRankSum=-0.423 GT:AD:DP:GQ:PL 0/0:12,0:12:33.11:0,33,418 0/1:4,2:6:59.73:60,0,105 1/1:0,6:6:15.05:190,15,0 0/1:5,10:15:95.19:301,0,95 0/1:7,7:14:99:210,0,247 0/0:18,0:18:51.17:0,51,707 0/0:16,0:16:42.13:0,42,554 0/0:13,0:13:39.13:0,39,542 0/0:14,0:14:42.14:0,42,537 0/0:12,0:12:30.10:0,30,393 0/0:12,0:12:36.11:0,36,445 0/0:13,0:13:36.11:0,36,463 0/0:11,0:11:30.10:0,30,392 0/0:12,0:12:36.11:0,36,452 0/1:13,16:29:99:473,0,394 0/1:2,3:5:62.11:91,0,62 0/0:14,0:14:42.14:0,42,537 0/0:13,0:13:36.09:0,36,445 0/1:15,14:29:99:383,0,468 0/1:10,14:24:99:402,0,259 0/0:24,0:24:69.22:0,69,877 0/0:12,0:12:33.11:0,33,430 0/1:8,12:20:99:383,0,236 0/0:21,0:21:57.19:0,57,785 0/0:15,0:15:39.12:0,39,521 0/0:16,0:16:48.16:0,48,657 0/0:6,0:6:15.05:0,15,190 0/0:12,0:12:36.12:0,36,460 0/0:17,0:17:48.16:0,48,622 0/0:7,0:7:21.06:0,21,263 0/0:12,0:12:33.10:0,33,424 0/0:25,0:25:66.21:0,66,871 0/0:15,0:15:39.13:0,39,509 0/0:12,0:12:33.11:0,33,426 0/0:3,0:3:9.03:0,9,112 0/1:5,9:14:99:291,0,154 0/1:13,9:22:99:214,0,378 0/0:9,1:10:1.92:3,0,283 0/1:7,5:12:99:148,0,204 0/1:3,6:9:79.15:162,0,79 0/0:13,0:13:33.11:0,33,437 0/1:9,8:17:99:218,0,271 12 80761430 . G A 17845.13 . 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G A 18473.38 . 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A G 2323.16 . AC=2;AF=0.024;AN=84;BaseQRankSum=11.266;DP=2199;Dels=0.00;FS=21.346;HRun=0;HaplotypeScore=1.3446;InbreedingCoeff=-0.0244;MQ=58.89;MQ0=0;MQRankSum=0.310;QD=14.43;ReadPosRankSum=1.681 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,126,1548 0/0:45,0:45:99:0,120,1502 0/0:34,0:34:96.29:0,96,1159 0/0:98,0:98:99:0,277,3423 0/0:91,0:91:99:0,253,3187 0/1:45,37:82:99:1185,0,1393 0/0:82,0:82:99:0,223,2849 0/1:42,37:79:99:1200,0,1154 0/0:29,0:29:81.25:0,81,999 0/0:36,0:36:99:0,102,1237 0/0:36,0:36:99:0,99,1220 0/0:51,0:51:99:0,141,1742 0/0:40,0:40:99:0,114,1384 0/0:38,0:38:96.30:0,96,1203 0/0:147,0:147:99:0,370,4643 0/0:19,0:19:51.14:0,51,620 0/0:39,0:39:99:0,114,1395 0/0:38,0:38:99:0,102,1264 0/0:44,0:44:99:0,117,1486 0/0:38,0:38:96.29:0,96,1199 0/0:45,0:45:99:0,123,1541 0/0:38,0:38:93.27:0,93,1170 0/0:131,0:131:99:0,346,4363 0/0:80,0:80:99:0,229,2849 0/0:87,0:87:99:0,238,3001 0/0:87,0:87:99:0,238,3006 0/0:21,0:21:60.18:0,60,737 0/0:39,0:39:99:0,108,1330 0/0:40,0:40:99:0,102,1241 0/0:38,0:38:99:0,105,1286 0/0:40,0:40:99:0,108,1365 0/0:33,0:33:78.25:0,78,1008 0/0:33,0:33:90.28:0,90,1113 0/0:38,0:38:99:0,114,1380 0/0:37,0:37:99:0,108,1321 0/0:56,0:56:99:0,159,1928 0/0:45,0:45:99:0,120,1490 0/0:44,0:44:99:0,123,1502 0/0:33,0:33:99:0,99,1187 0/0:49,0:49:99:0,132,1652 0/0:37,0:37:96.29:0,96,1202 0/0:36,0:36:99:0,105,1272 12 81610702 . G A 6471.07 . 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T G 572.45 . 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C T 574.23 . 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T A 18209.53 . AC=18;AF=0.214;AN=84;BaseQRankSum=0.393;DP=3965;Dels=0.00;FS=1.343;HRun=3;HaplotypeScore=1.1152;InbreedingCoeff=-0.2727;MQ=59.50;MQ0=0;MQRankSum=1.116;QD=12.78;ReadPosRankSum=0.589 GT:AD:DP:GQ:PL 0/0:77,0:77:99:0,190,2385 0/0:72,0:72:99:0,184,2268 0/1:32,38:70:99:1070,0,910 0/0:172,0:172:99:0,421,5326 0/1:59,57:116:99:1487,0,1698 0/0:133,1:134:99:0,295,4244 0/1:73,56:129:99:1521,0,2092 0/0:123,0:123:99:0,304,3900 0/0:70,0:70:99:0,184,2250 0/1:42,27:69:99:643,0,1197 0/0:61,0:61:99:0,150,1862 0/1:32,39:71:99:1089,0,879 0/1:27,32:59:99:953,0,776 0/0:68,0:68:99:0,175,2175 0/0:243,0:244:99:0,587,7338 0/1:20,22:42:99:546,0,599 0/0:63,1:64:99:0,144,2120 0/1:36,46:82:99:1329,0,939 0/1:71,56:127:99:1432,0,1799 0/0:122,0:122:99:0,289,3652 0/1:59,41:100:99:1017,0,1696 0/0:75,0:75:99:0,196,2376 0/0:191,0:191:99:0,482,6104 0/0:163,0:163:99:0,400,5200 0/0:154,0:154:99:0,358,4641 0/0:145,0:145:99:0,346,4463 0/1:26,22:49:99:582,0,723 0/1:46,33:79:99:910,0,1249 0/0:74,0:74:99:0,193,2359 0/1:33,26:59:99:745,0,899 0/1:34,24:59:99:677,0,944 0/1:59,52:111:99:1382,0,1529 0/0:67,0:67:99:0,187,2254 0/1:38,36:74:99:1025,0,1031 0/1:35,35:70:99:975,0,944 0/0:80,0:80:99:0,214,2615 0/0:87,0:87:99:0,229,2808 0/0:77,1:78:99:0,178,2455 0/1:29,30:59:99:825,0,794 0/0:63,0:63:99:0,172,2138 0/0:81,0:81:99:0,217,2606 0/0:75,0:75:99:0,196,2434 12 85277592 . C T 3200.89 . 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C T 27116.16 . 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A G 2943.90 . 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T A 7580.24 . AC=7;AF=0.083;AN=84;BaseQRankSum=3.687;DP=3740;Dels=0.00;FS=8.698;HRun=1;HaplotypeScore=1.0728;InbreedingCoeff=-0.0909;MQ=59.52;MQ0=0;MQRankSum=0.534;QD=13.58;ReadPosRankSum=0.208 GT:AD:DP:GQ:PL 0/0:78,0:78:99:0,214,2601 0/0:64,0:64:99:0,169,2082 0/0:64,0:64:99:0,190,2288 0/0:157,0:157:99:0,430,5288 0/0:149,0:149:99:0,403,5080 0/0:139,0:139:99:0,364,4702 0/0:123,0:123:99:0,349,4401 0/0:148,1:150:99:0,385,4888 0/0:80,0:80:99:0,214,2605 0/0:58,0:58:99:0,166,2009 0/0:60,1:61:99:0,134,2019 0/0:68,0:68:99:0,187,2297 0/0:73,0:73:99:0,187,2331 0/0:74,0:74:99:0,199,2478 0/0:229,0:231:99:0,581,7224 0/0:65,0:66:99:0,175,2143 0/0:87,0:87:99:0,232,2847 0/0:70,0:70:99:0,205,2473 0/0:72,0:72:99:0,199,2452 0/1:45,34:79:99:1023,0,1309 0/0:75,0:75:99:0,205,2530 0/0:57,0:57:99:0,150,1840 0/1:90,80:170:99:2364,0,2588 0/0:125,0:125:99:0,346,4327 0/0:124,0:124:99:0,343,4322 0/0:130,0:130:99:0,343,4381 0/0:55,0:55:99:0,153,1872 0/1:28,28:56:99:750,0,843 0/0:71,1:72:99:0,199,2419 0/1:28,25:53:99:746,0,835 0/1:25,22:47:99:648,0,728 0/0:89,0:89:99:0,235,2928 0/0:59,0:59:99:0,153,1918 0/0:74,0:74:99:0,208,2531 0/0:71,1:72:99:0,164,2349 0/0:87,0:87:99:0,232,2870 0/1:44,45:89:99:1200,0,1153 0/0:80,0:80:99:0,214,2595 0/1:35,29:64:99:849,0,927 0/0:76,0:76:99:0,205,2551 0/0:66,0:66:99:0,187,2272 0/0:76,0:76:99:0,208,2569 12 85438499 . G A 14322.33 . AC=21;AF=0.250;AN=84;BaseQRankSum=-28.715;DP=2348;Dels=0.00;FS=12.414;HRun=0;HaplotypeScore=0.7769;InbreedingCoeff=-0.0794;MQ=59.49;MQ0=0;MQRankSum=0.846;QD=13.85;ReadPosRankSum=0.002 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,105,1321 0/0:37,1:38:73.09:0,73,1319 0/1:22,35:57:99:972,0,598 0/0:108,0:108:99:0,292,4016 0/0:97,0:97:99:0,256,3548 0/0:84,0:84:99:0,214,2990 0/0:122,0:122:99:0,316,4397 0/1:44,35:79:99:960,0,1377 0/0:40,0:40:99:0,108,1389 0/0:36,0:36:93.27:0,93,1186 0/0:30,0:30:81.26:0,81,1058 0/0:54,0:54:99:0,144,1873 0/1:28,24:52:99:645,0,762 0/1:19,22:41:99:609,0,567 0/0:132,0:132:99:0,328,4293 0/0:20,0:20:51.17:0,51,669 0/0:49,0:49:99:0,126,1650 0/0:68,0:68:99:0,193,2451 0/0:42,0:42:99:0,102,1317 0/1:21,17:38:99:448,0,670 0/0:57,0:57:99:0,141,1863 0/0:30,0:30:87.28:0,87,1110 0/1:52,31:83:99:824,0,1683 0/1:59,39:98:99:978,0,1847 0/1:50,37:87:99:886,0,1588 0/1:45,47:92:99:1303,0,1369 0/1:19,17:36:99:470,0,559 0/1:32,23:55:99:597,0,1002 1/1:0,42:42:99:1446,123,0 0/1:24,22:46:99:624,0,718 1/1:0,32:32:87.24:1031,87,0 0/0:59,0:59:99:0,138,1841 0/0:49,0:49:99:0,120,1561 0/0:31,0:31:90.29:0,90,1143 0/0:37,0:37:99:0,102,1328 0/0:45,0:45:99:0,123,1582 0/1:27,20:47:99:527,0,696 0/0:49,0:49:99:0,135,1724 0/1:13,13:26:99:388,0,324 0/1:19,17:36:99:474,0,584 0/1:14,17:31:99:501,0,376 0/1:31,25:56:99:642,0,906 12 85674087 . A G 1742.48 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.995;DP=3718;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8685;InbreedingCoeff=-0.0244;MQ=59.18;MQ0=0;MQRankSum=-0.772;QD=14.17;ReadPosRankSum=-1.270 GT:AD:DP:GQ:PL 0/0:65,0:65:99:0,184,2261 0/0:72,0:72:99:0,199,2451 0/0:56,0:56:99:0,150,1861 0/0:155,0:155:99:0,406,5138 0/0:133,0:133:99:0,364,4590 0/0:121,0:121:99:0,310,4001 0/0:107,0:107:99:0,262,3380 0/0:126,0:126:99:0,319,4112 0/0:48,0:48:99:0,132,1619 0/0:70,0:70:99:0,187,2291 0/0:68,0:68:99:0,187,2274 0/1:31,31:62:99:966,0,822 0/0:52,0:52:99:0,135,1693 0/1:32,29:61:99:839,0,823 0/0:244,0:244:99:0,623,7773 0/0:50,0:50:99:0,144,1732 0/0:70,0:70:99:0,193,2361 0/0:70,0:70:99:0,211,2545 0/0:134,0:134:99:0,361,4470 0/0:132,0:132:99:0,361,4510 0/0:142,0:142:99:0,364,4569 0/0:77,0:77:99:0,220,2682 0/0:161,0:161:99:0,418,5351 0/0:95,0:95:99:0,241,3120 0/0:117,0:117:99:0,316,4036 0/0:88,0:88:99:0,226,2832 0/0:62,0:62:99:0,163,2044 0/0:69,0:69:99:0,196,2401 0/0:69,0:69:99:0,190,2350 0/0:56,0:56:99:0,159,1945 0/0:43,0:43:99:0,123,1516 0/0:137,0:137:99:0,355,4467 0/0:86,0:86:99:0,229,2817 0/0:55,0:55:99:0,150,1865 0/0:59,0:59:99:0,159,1989 0/0:57,0:57:99:0,156,1926 0/0:145,0:145:99:0,385,4785 0/0:80,0:80:99:0,205,2534 0/0:50,0:50:99:0,141,1701 0/0:47,0:47:99:0,135,1666 0/0:72,0:72:99:0,196,2397 0/0:54,0:54:99:0,150,1816 12 85674230 . G T 650.08 . 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C T 4909.80 . AC=2;AF=0.024;AN=84;BaseQRankSum=11.233;DP=5011;DS;Dels=0.00;FS=0.925;HRun=3;HaplotypeScore=1.7858;InbreedingCoeff=-0.0244;MQ=59.51;MQ0=0;MQRankSum=-0.842;QD=13.53;ReadPosRankSum=1.173 GT:AD:DP:GQ:PL 0/0:84,0:84:99:0,238,2703 0/0:98,0:98:99:0,271,3139 0/0:82,0:82:99:0,217,2534 0/0:226,0:226:99:0,623,7744 0/0:211,0:211:99:0,596,7414 0/1:116,96:212:99:2903,0,3267 0/1:83,68:151:99:2007,0,2397 0/0:202,0:202:99:0,524,6611 0/0:86,0:86:99:0,241,2762 0/0:66,0:66:99:0,186,2104 0/0:76,0:76:99:0,208,2386 0/0:88,0:88:99:0,250,2866 0/0:81,0:81:99:0,235,2676 0/0:101,0:101:99:0,280,3162 0/0:226,0:226:99:0,605,6945 0/0:72,0:72:99:0,193,2252 0/0:101,0:101:99:0,289,3287 0/0:92,0:92:99:0,259,3002 0/0:129,0:129:99:0,349,3974 0/0:137,0:137:99:0,373,4320 0/0:127,0:127:99:0,349,3974 0/0:79,0:79:99:0,220,2510 0/0:246,0:247:99:0,665,8397 0/0:207,0:207:99:0,536,6870 0/0:193,0:193:99:0,521,6646 0/0:159,0:159:99:0,418,5326 0/0:76,0:76:99:0,211,2441 0/0:101,0:101:99:0,277,3153 0/0:85,0:85:99:0,238,2792 0/0:86,0:86:99:0,229,2667 0/0:79,0:79:99:0,229,2638 0/0:132,0:132:99:0,364,4236 0/0:74,0:74:99:0,199,2307 0/0:94,0:94:99:0,256,2958 0/0:85,0:85:99:0,241,2755 0/0:107,0:107:99:0,301,3381 0/0:125,0:125:99:0,322,3720 0/0:94,0:95:99:0,274,3064 0/0:70,1:71:99:0,198,2241 0/0:92,0:92:99:0,250,2860 0/0:78,1:81:99:0,183,2467 0/0:95,0:95:99:0,265,3052 12 88379788 . C T 6468.32 . AC=4;AF=0.048;AN=84;BaseQRankSum=2.712;DP=4775;DS;Dels=0.00;FS=1.116;HRun=0;HaplotypeScore=1.6562;InbreedingCoeff=0.4750;MQ=59.52;MQ0=0;MQRankSum=3.003;QD=20.09;ReadPosRankSum=1.427 GT:AD:DP:GQ:PL 0/0:77,0:77:99:0,208,2432 0/0:89,0:89:99:0,253,2922 0/0:77,0:77:99:0,211,2462 0/0:230,1:231:99:0,585,7727 0/0:211,1:212:99:0,536,7133 0/0:200,0:200:99:0,539,6720 0/0:150,1:151:99:0,380,5166 0/0:190,0:191:99:0,481,6087 0/0:73,0:73:99:0,202,2298 0/0:69,0:69:99:0,196,2266 0/0:78,0:78:99:0,214,2498 0/0:77,0:77:99:0,214,2445 0/0:87,0:87:99:0,244,2845 0/0:95,1:96:99:0,237,2991 0/0:229,0:229:99:0,608,7077 0/0:68,0:68:99:0,168,1962 0/0:92,1:93:99:0,227,2967 0/1:47,44:91:99:1249,0,1231 1/1:0,108:108:99:3588,292,0 0/1:63,60:123:99:1631,0,1738 0/0:123,0:124:99:0,316,3682 0/0:68,0:68:99:0,187,2185 0/0:243,0:244:99:0,626,7979 0/0:195,0:195:99:0,500,6359 0/0:172,0:173:99:0,457,5847 0/0:158,2:160:99:0,343,5133 0/0:75,0:75:99:0,193,2283 0/0:94,0:94:99:0,271,3067 0/0:78,0:78:99:0,226,2616 0/0:88,1:89:99:0,211,2765 0/0:73,0:73:99:0,214,2444 0/0:127,0:127:99:0,340,4035 0/0:66,0:66:99:0,187,2132 0/0:87,0:88:99:0,238,2747 0/0:85,0:85:99:0,235,2743 0/0:88,0:88:99:0,259,2853 0/0:104,0:105:99:0,277,3200 0/0:91,0:91:99:0,253,2889 0/0:80,0:80:99:0,217,2487 0/0:90,0:90:99:0,250,2839 0/0:70,0:70:99:0,196,2246 0/0:92,0:92:99:0,256,2944 12 88508258 . T C 224.65 . AC=1;AF=0.013;AN=80;BaseQRankSum=4.574;DP=312;Dels=0.00;FS=6.871;HRun=1;HaplotypeScore=0.1380;InbreedingCoeff=-0.0482;MQ=58.84;MQ0=0;MQRankSum=1.893;QD=11.82;ReadPosRankSum=2.211 GT:AD:DP:GQ:PL 0/0:9,0:9:24.07:0,24,290 0/0:3,0:3:9.03:0,9,105 0/0:9,0:9:27.08:0,27,322 0/0:2,0:2:3.01:0,3,45 0/0:1,0:1:3.01:0,3,37 ./. 0/0:1,0:1:3.01:0,3,37 ./. 0/0:8,0:8:24.07:0,24,285 0/0:4,0:4:9.03:0,9,118 0/0:10,0:10:24.08:0,24,306 0/0:6,0:6:15.04:0,15,181 0/0:6,0:6:15.05:0,15,191 0/0:6,0:6:15.05:0,15,192 0/1:9,10:19:99:270,0,276 0/0:4,0:4:9.03:0,9,115 0/0:2,0:2:6:0,6,62 0/0:7,0:7:21.06:0,21,252 0/0:13,0:13:36.11:0,36,445 0/0:21,0:21:48.15:0,48,625 0/0:14,0:14:36.10:0,36,444 0/0:11,0:11:33.10:0,33,388 0/0:3,0:3:9.03:0,9,107 0/0:1,0:1:3.01:0,3,38 0/0:2,0:2:6.02:0,6,69 0/0:2,0:2:6.02:0,6,70 0/0:8,0:8:24.07:0,24,294 0/0:13,0:13:36.11:0,36,435 0/0:4,0:4:12.04:0,12,140 0/0:8,0:8:24.07:0,24,281 0/0:5,0:5:12.04:0,12,153 0/0:18,0:18:42.13:0,42,544 0/0:12,0:12:33.10:0,33,402 0/0:6,0:6:18.06:0,18,219 0/0:7,0:7:21.06:0,21,252 0/0:8,0:8:24.07:0,24,287 0/0:14,0:14:39.12:0,39,477 0/0:10,0:10:24.07:0,24,303 0/0:13,0:13:33.10:0,33,418 0/0:7,0:7:21.06:0,21,256 0/0:6,0:6:15.05:0,15,188 0/0:9,0:9:24.07:0,24,297 12 88547277 . T C 85964.74 . AC=84;AF=1.000;AN=84;DP=2367;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8012;InbreedingCoeff=-0.0000;MQ=59.46;MQ0=0;QD=36.32 GT:AD:DP:GQ:PL 1/1:0,33:33:87.28:1119,87,0 1/1:0,50:50:99:1654,129,0 1/1:0,29:29:78.24:1007,78,0 1/1:0,105:105:99:3955,289,0 1/1:0,123:123:99:4922,352,0 1/1:0,91:91:99:3389,244,0 1/1:0,87:87:99:3295,241,0 1/1:0,101:101:99:3879,280,0 1/1:0,33:33:99:1273,99,0 1/1:0,36:36:93.30:1204,93,0 1/1:0,35:35:96.31:1252,96,0 1/1:0,51:51:99:1818,141,0 1/1:0,39:39:99:1392,111,0 1/1:0,31:31:87.28:1131,87,0 1/1:0,143:143:99:4811,370,0 1/1:0,33:33:93.30:1198,93,0 1/1:0,53:54:99:1944,153,0 1/1:0,45:45:99:1687,132,0 1/1:0,58:58:99:2115,166,0 1/1:0,66:66:99:2189,166,0 1/1:0,62:62:99:2095,163,0 1/1:0,38:38:99:1331,102,0 1/1:0,123:123:99:4428,316,0 1/1:0,99:99:99:3803,274,0 1/1:0,111:111:99:4082,295,0 1/1:0,83:83:99:3198,232,0 1/1:0,39:39:99:1405,108,0 1/1:0,37:37:99:1335,105,0 1/1:0,36:36:96.31:1244,96,0 1/1:0,52:52:99:1901,150,0 1/1:0,35:35:99:1283,102,0 1/1:0,56:56:99:1978,150,0 1/1:0,25:25:75.24:965,75,0 1/1:0,26:26:75.24:954,75,0 1/1:0,32:32:87.28:1131,87,0 1/1:0,46:46:99:1690,132,0 1/1:0,43:43:99:1532,123,0 1/1:0,41:41:99:1388,108,0 1/1:0,31:31:84.27:1076,84,0 1/1:0,27:27:72.23:931,72,0 1/1:0,40:40:99:1457,114,0 1/1:0,42:42:99:1526,117,0 12 88553928 . T TGGGGT 66935.21 . AC=42;AF=0.500;AN=84;BaseQRankSum=26.302;DP=5514;DS;FS=3200.000;HRun=0;HaplotypeScore=775.7171;InbreedingCoeff=-1.0000;MQ=60.11;MQ0=0;MQRankSum=17.523;QD=12.14;ReadPosRankSum=-47.216 GT:AD:DP:GQ:PL 0/1:77,0:76:99:891,0,1787 0/1:120,0:120:99:932,0,2936 0/1:96,0:96:99:1391,0,2336 0/1:123,0:242:99:3700,0,5174 0/1:119,1:246:99:3991,0,5230 0/1:161,0:235:99:2688,0,5180 0/1:152,0:226:99:2948,0,5664 0/1:169,0:239:99:2615,0,5911 0/1:87,0:87:99:1130,0,2071 0/1:89,0:89:99:783,0,2293 0/1:80,0:80:99:901,0,2115 0/1:109,0:109:99:1226,0,3072 0/1:112,0:112:99:1484,0,2829 0/1:88,0:88:99:781,0,2067 0/1:235,0:249:99:2193,0,6586 0/1:55,0:55:99:504,0,1460 0/1:89,0:89:99:1446,0,1712 0/1:84,0:84:99:1189,0,2160 0/1:94,0:127:99:1790,0,2960 0/1:127,0:136:99:1214,0,3743 0/1:107,0:137:99:1466,0,3901 0/1:81,0:81:99:981,0,1968 0/1:153,1:234:99:3819,0,5421 0/1:182,0:244:99:2490,0,5823 0/1:127,0:239:99:2824,0,5396 0/1:129,0:242:99:3224,0,5966 0/1:72,0:72:99:718,0,1667 0/1:72,0:126:99:1947,0,2929 0/1:86,0:86:99:965,0,2102 0/1:67,0:107:99:1485,0,2728 0/1:87,0:87:99:1295,0,2408 0/1:104,0:110:99:973,0,2610 0/1:97,0:97:99:967,0,2354 0/1:113,0:113:99:1204,0,2930 0/1:75,0:75:99:1066,0,1935 0/1:108,0:108:99:1035,0,3045 0/1:88,0:112:99:942,0,3119 0/1:96,0:96:99:960,0,2364 0/1:80,0:80:99:1399,0,1864 0/1:97,0:97:99:899,0,2811 0/1:80,0:80:99:1297,0,1936 0/1:84,0:84:99:1186,0,1743 12 88553929 . GTT G 10703.21 . AC=30;AF=0.357;AN=84;BaseQRankSum=3.495;DP=3990;DS;FS=3200.000;HRun=2;HaplotypeScore=307.7251;InbreedingCoeff=-0.5556;MQ=59.99;MQ0=0;MQRankSum=7.473;QD=4.15;ReadPosRankSum=-32.672 GT:AD:DP:GQ:PL 0/1:64,0:63:99:249,0,1974 0/1:103,0:103:99:376,0,2901 0/1:82,0:82:99:271,0,2742 0/0:105,0:105:99:0,316,6208 0/0:104,0:104:99:0,310,6130 0/0:101,43:142:99:0,275,5955 0/0:110,29:134:99:0,296,6472 0/0:117,34:150:99:0,346,6865 0/1:78,0:78:99:406,0,2292 0/1:83,0:83:99:256,0,2602 0/1:76,0:76:99:386,0,2432 0/1:96,0:96:99:168,0,3326 0/1:95,0:95:99:506,0,3084 0/1:78,0:78:99:343,0,2427 0/1:142,70:212:99:564,0,7893 0/1:51,0:51:99:280,0,1590 0/1:70,0:70:99:423,0,1868 0/1:74,0:74:99:230,0,2354 0/0:64,13:77:99:0,161,3491 0/1:115,0:115:99:441,0,3795 0/0:77,7:84:99:0,154,4473 0/1:72,0:72:99:202,0,1994 0/0:112,24:136:99:0,251,6444 0/0:126,39:160:99:0,373,7343 0/0:114,0:111:99:0,288,6415 0/0:118,0:114:99:0,314,6801 0/1:62,0:62:99:215,0,1863 0/1:103,0:103:99:521,0,3193 0/1:75,0:75:99:462,0,2306 0/1:87,0:87:99:449,0,2839 0/1:79,0:79:99:286,0,2577 0/1:93,0:93:99:411,0,2857 0/1:93,0:93:99:447,0,2561 0/1:103,0:103:99:585,0,3134 0/1:63,0:63:99:246,0,1966 0/1:98,0:98:99:398,0,3147 0/0:61,11:72:99:0,178,3478 0/1:86,0:86:99:283,0,2746 0/1:66,0:66:99:339,0,1906 0/1:87,0:87:99:256,0,3038 0/1:68,0:68:99:358,0,2202 0/1:69,0:69:99:343,0,2098 12 88900891 . C A 652 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.812;DP=2459;DS;Dels=0.00;FS=5.966;HRun=0;HaplotypeScore=2.2139;InbreedingCoeff=-0.0120;MQ=59.48;MQ0=0;MQRankSum=0.371;QD=13.31;ReadPosRankSum=0.219 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,153,1947 0/0:43,0:43:99:0,120,1528 0/0:48,0:48:99:0,138,1743 0/0:104,0:104:99:0,301,4065 0/0:86,0:86:99:0,253,3459 0/0:78,1:79:99:0,223,3012 0/0:64,0:64:99:0,187,2511 0/0:48,0:48:99:0,132,1777 0/0:41,0:41:99:0,123,1539 0/0:51,0:51:99:0,147,1873 0/0:45,0:45:99:0,135,1712 0/0:53,0:53:99:0,153,1939 0/0:39,0:39:99:0,105,1331 0/0:31,0:32:87.25:0,87,1094 0/0:132,1:133:99:0,373,4767 0/0:33,0:33:90.28:0,90,1134 0/0:44,0:44:99:0,132,1661 0/1:25,24:49:99:698,0,776 0/0:81,0:81:99:0,229,2865 0/0:75,0:75:99:0,202,2527 0/0:80,0:80:99:0,241,3027 0/0:51,0:51:99:0,144,1820 0/0:93,0:93:99:0,265,3641 0/0:53,0:53:99:0,150,2015 0/0:64,0:64:99:0,187,2489 0/0:73,0:73:99:0,202,2716 0/0:41,0:41:99:0,120,1536 0/0:55,0:55:99:0,163,2039 0/0:48,0:48:99:0,141,1790 0/0:51,0:51:99:0,141,1758 0/0:39,0:39:99:0,114,1449 0/0:78,0:78:99:0,223,2775 0/0:57,0:57:99:0,166,2094 0/0:58,0:58:99:0,169,2109 0/0:50,0:50:99:0,141,1794 0/0:71,0:71:99:0,202,2556 0/0:55,0:56:99:0,159,2018 0/0:52,0:52:99:0,153,1930 0/0:38,0:38:99:0,111,1401 0/0:60,0:60:99:0,172,2193 0/0:41,0:41:99:0,120,1540 0/0:49,1:50:99:0,114,1840 12 89866054 . TAGAAAGAAGA T 37139.33 . AC=39;AF=0.464;AN=84;BaseQRankSum=26.588;DP=1872;FS=7.852;HRun=0;HaplotypeScore=370.4497;InbreedingCoeff=-0.2923;MQ=52.89;MQ0=0;MQRankSum=-22.877;QD=27.17;ReadPosRankSum=2.851 GT:AD:DP:GQ:PL 0/1:21,6:27:99:655,0,1149 0/1:29,10:39:99:873,0,1900 0/1:27,7:34:99:776,0,1275 0/0:81,0:81:99:0,196,9444 0/1:42,19:61:99:1514,0,3008 1/1:21,31:50:93.29:2668,93,0 0/1:51,16:64:99:1322,0,3856 0/1:41,19:59:99:1668,0,2600 0/1:34,7:41:99:612,0,2591 0/1:30,6:36:99:551,0,2156 0/0:34,0:34:78.25:0,78,3634 0/0:46,0:45:99:0,108,4718 0/1:20,4:24:99:362,0,1170 0/1:28,10:38:99:864,0,2190 1/1:51,47:98:99:4553,154,0 0/1:18,6:24:99:525,0,1161 0/1:27,5:32:99:412,0,1733 0/1:34,8:41:99:678,0,2538 0/1:44,11:55:99:783,0,4022 0/1:25,12:37:99:990,0,1354 0/1:40,19:59:99:1475,0,3141 0/1:21,5:26:99:481,0,1441 0/0:79,1:80:77.05:0,77,7930 0/0:69,0:68:99:0,129,6085 0/1:32,22:54:99:1676,0,2507 0/0:59,0:57:99:0,141,6753 0/1:15,7:22:99:617,0,871 1/1:20,17:37:66.20:1820,66,0 0/0:34,0:34:75.26:0,75,3659 1/1:17,16:33:63.19:1685,63,0 0/1:30,8:38:99:717,0,2091 0/1:39,10:49:99:977,0,2992 1/1:13,21:34:75.21:2130,75,0 0/1:31,8:39:99:714,0,1664 0/1:28,4:32:99:414,0,1542 0/1:35,6:41:99:492,0,2325 0/0:68,0:68:99:0,169,7928 0/0:34,0:34:78.27:0,78,3988 0/1:31,8:39:99:678,0,2470 1/1:17,17:34:60.20:1732,60,0 0/1:16,8:24:99:814,0,1294 0/1:30,9:39:99:911,0,1356 12 93139348 . A G 2261.72 . AC=2;AF=0.024;AN=84;BaseQRankSum=10.925;DP=4095;DS;Dels=0.00;FS=5.270;HRun=1;HaplotypeScore=0.9994;InbreedingCoeff=-0.0244;MQ=59.53;MQ0=0;MQRankSum=-0.566;QD=11.78;ReadPosRankSum=-0.224 GT:AD:DP:GQ:PL 0/0:68,0:68:99:0,196,2340 0/0:69,0:69:99:0,187,2232 0/0:75,0:75:99:0,217,2580 0/0:179,0:179:99:0,503,6003 0/0:155,0:155:99:0,424,5159 0/0:144,0:144:99:0,379,4762 0/0:128,0:128:99:0,337,4187 0/0:121,0:121:99:0,346,4150 0/0:78,0:78:99:0,223,2630 0/0:89,0:89:99:0,247,2925 0/0:79,0:79:99:0,220,2604 0/0:75,0:75:99:0,214,2515 0/0:62,0:62:99:0,175,2065 0/0:55,0:55:99:0,156,1894 0/0:225,0:225:99:0,632,7469 0/0:46,0:46:99:0,129,1539 0/0:88,0:88:99:0,250,2963 0/0:74,0:74:99:0,211,2514 0/0:155,0:155:99:0,427,5155 0/1:68,58:126:99:1723,0,1934 0/0:130,0:130:99:0,340,4157 0/0:86,0:86:99:0,253,2950 0/0:169,0:169:99:0,451,5499 0/0:123,0:123:99:0,340,4120 0/0:141,1:142:99:0,348,4671 0/0:138,0:138:99:0,403,4849 0/0:49,0:49:99:0,141,1678 0/0:79,0:79:99:0,220,2607 0/0:66,0:66:99:0,193,2244 0/0:76,0:76:99:0,220,2605 0/1:45,21:66:99:601,0,1262 0/0:122,0:123:99:0,325,3899 0/0:81,0:81:99:0,226,2681 0/0:68,0:68:99:0,196,2331 0/0:74,0:74:99:0,214,2535 0/0:99,0:100:99:0,286,3399 0/0:99,0:99:99:0,268,3203 0/0:74,0:74:99:0,214,2516 0/0:60,1:61:99:0,175,2043 0/0:63,0:63:99:0,184,2176 0/0:64,0:64:99:0,187,2202 0/0:73,0:73:99:0,205,2440 12 93150102 . T C 54241.01 . AC=38;AF=0.452;AN=84;BaseQRankSum=13.777;DP=3858;Dels=0.00;FS=0.810;HRun=0;HaplotypeScore=1.2842;InbreedingCoeff=0.0389;MQ=59.37;MQ0=0;MQRankSum=0.660;QD=19.80;ReadPosRankSum=1.096 GT:AD:DP:GQ:PL 0/1:45,35:80:99:905,0,1231 0/0:83,0:83:99:0,211,2619 0/0:52,0:52:99:0,144,1740 1/1:1,151:152:99:4983,346,0 1/1:0,102:102:99:3624,271,0 0/0:107,0:107:99:0,283,3605 0/1:46,48:94:99:1482,0,1222 0/1:39,65:104:99:1959,0,999 0/1:42,44:86:99:1175,0,991 0/0:80,0:80:99:0,214,2578 1/1:0,71:71:99:2380,196,0 0/1:37,30:67:99:829,0,1001 1/1:0,50:50:99:1668,138,0 0/0:54,0:54:99:0,144,1754 0/1:110,115:226:99:2881,0,3063 0/1:25,27:52:99:759,0,686 0/1:38,30:68:99:786,0,1088 1/1:1,65:66:99:2138,150,0 0/1:83,84:167:99:2265,0,2137 0/1:82,72:154:99:1877,0,2248 0/0:163,0:163:99:0,412,5094 0/0:84,0:84:99:0,235,2819 1/1:0,122:122:99:4126,307,0 0/1:41,51:92:99:1526,0,1057 1/1:0,101:101:99:3724,280,0 0/1:64,48:112:99:1523,0,1733 0/1:36,30:66:99:781,0,999 0/1:44,40:84:99:1116,0,1205 0/1:23,29:52:99:826,0,646 0/0:73,1:74:99:0,168,2383 0/1:26,42:68:99:1120,0,739 0/1:58,55:113:99:1518,0,1491 0/1:41,39:80:99:1112,0,1196 0/1:39,27:66:99:712,0,1153 0/0:75,1:76:99:0,165,2394 1/1:0,73:73:99:2264,187,0 0/0:127,0:127:99:0,325,4014 0/0:78,0:78:99:0,205,2494 0/0:70,0:70:99:0,202,2425 0/1:37,43:80:99:1228,0,1014 0/0:65,5:70:35.25:0,35,2017 1/1:0,91:91:99:2955,247,0 12 93202801 . C T 25290.98 . AC=31;AF=0.369;AN=84;BaseQRankSum=-24.624;DP=2337;Dels=0.00;FS=10.190;HRun=2;HaplotypeScore=0.5025;InbreedingCoeff=0.0286;MQ=59.50;MQ0=0;MQRankSum=-0.461;QD=18.71;ReadPosRankSum=0.929 GT:AD:DP:GQ:PL 0/1:31,17:48:99:487,0,950 0/0:55,0:55:99:0,147,1898 0/0:41,0:41:99:0,114,1487 1/1:1,62:63:99:1965,120,0 1/1:0,74:74:99:2562,202,0 0/0:94,0:94:99:0,244,3352 0/1:28,24:52:99:714,0,985 0/0:75,0:75:99:0,196,2712 0/1:30,31:61:99:833,0,795 0/0:44,0:44:99:0,111,1465 1/1:0,39:39:99:1356,111,0 0/1:15,14:29:99:429,0,402 0/1:29,18:47:99:507,0,823 0/0:62,0:62:99:0,160,2078 0/1:92,67:159:99:1746,0,2464 0/1:27,14:41:99:347,0,762 0/1:34,21:55:99:620,0,1005 1/1:0,44:44:99:1513,120,0 0/1:25,30:55:99:870,0,744 0/0:51,0:51:99:0,129,1696 0/0:72,0:72:99:0,181,2364 0/0:39,0:39:99:0,108,1384 1/1:0,76:76:99:2524,199,0 0/1:25,40:65:99:1260,0,774 0/1:37,36:73:99:979,0,1119 0/0:109,0:109:99:0,265,3676 0/1:12,12:24:99:347,0,352 0/1:22,25:47:99:708,0,599 0/1:12,31:43:99:902,0,311 0/0:49,0:49:99:0,132,1704 0/0:44,0:44:99:0,111,1437 0/1:23,28:51:99:793,0,705 0/1:13,18:31:99:501,0,380 0/1:21,15:36:99:428,0,636 0/0:53,0:53:99:0,144,1891 0/1:25,19:44:99:461,0,764 0/0:50,0:51:99:0,114,1496 0/0:59,0:59:99:0,157,2047 0/0:45,0:45:99:0,120,1569 0/1:21,29:50:99:897,0,595 0/0:41,1:42:76.57:0,77,1412 1/1:0,44:44:99:1542,123,0 12 93793041 . A G 395.34 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.971;DP=4751;DS;Dels=0.00;FS=10.658;HRun=0;HaplotypeScore=1.7938;InbreedingCoeff=-0.0244;MQ=33.83;MQ0=969;MQRankSum=-0.344;QD=2.64;ReadPosRankSum=-2.694 GT:AD:DP:GQ:PL 0/0:72,0:72:99:0,178,2026 0/0:82,0:82:99:0,159,1804 0/0:69,0:69:99:0,162,1853 0/0:237,0:237:99:0,572,6444 0/0:203,0:203:99:0,493,5626 0/0:203,0:203:99:0,481,5721 0/0:148,0:148:99:0,337,3908 0/0:176,0:176:99:0,415,4686 0/1:53,19:72:99:329,0,1097 0/0:84,0:84:99:0,174,1962 0/1:65,13:78:99:129,0,1458 0/0:84,0:84:99:0,190,2167 0/0:83,0:83:99:0,202,2229 0/0:78,0:78:99:0,165,1853 0/0:250,0:250:99:0,596,6696 0/0:81,0:81:99:0,162,1852 0/0:84,0:84:99:0,180,2002 0/0:76,0:76:99:0,174,1989 0/0:115,0:115:99:0,286,3284 0/0:129,0:129:99:0,304,3500 0/0:130,0:130:99:0,295,3374 0/0:81,0:81:99:0,190,2196 0/0:220,0:220:99:0,514,5824 0/0:151,0:151:99:0,361,4141 0/0:191,0:191:99:0,466,5326 0/0:175,1:176:99:0,407,4920 0/0:64,0:64:99:0,153,1707 0/0:86,0:86:99:0,199,2247 0/0:73,0:73:99:0,144,1656 0/0:85,0:85:99:0,180,2052 0/0:77,0:77:99:0,180,2042 0/0:121,0:121:99:0,280,3235 0/0:97,0:97:99:0,217,2427 0/0:95,0:95:99:0,223,2548 0/0:90,0:90:99:0,177,2005 0/0:97,0:98:99:0,214,2424 0/0:124,0:125:99:0,259,2949 0/0:79,0:79:99:0,177,1982 0/0:78,0:78:99:0,141,1592 0/0:71,0:71:99:0,177,2002 0/0:80,0:80:99:0,159,1815 0/0:79,0:79:99:0,165,1884 12 94580206 . A C 129.33 . AC=1;AF=0.012;AN=84;BaseQRankSum=-23.504;DP=2503;Dels=0.00;FS=171.586;HRun=1;HaplotypeScore=1.3977;InbreedingCoeff=-0.0156;MQ=59.24;MQ0=0;MQRankSum=-0.778;QD=1.58;ReadPosRankSum=-14.278 GT:AD:DP:GQ:PL 0/0:42,11:53:99:0,108,1251 0/0:40,18:58:99:0,99,1174 0/0:32,14:46:46.84:0,47,969 0/0:55,27:82:99:0,103,1469 0/0:41,29:70:83.64:0,84,1282 0/0:68,18:86:99:0,132,1698 0/0:44,18:62:90.60:0,91,1279 0/0:55,8:63:99:0,121,1616 0/0:39,13:52:99:0,108,1266 0/0:44,11:55:69.88:0,70,1227 0/0:30,12:42:52.67:0,53,903 0/0:31,8:39:84.20:0,84,960 0/0:29,15:44:17.58:0,18,737 0/0:33,19:52:76.53:0,77,1047 0/0:103,48:152:99:0,141,2723 0/0:35,13:48:71.61:0,72,1091 0/0:35,14:49:56.33:0,56,1024 0/0:29,11:40:45.14:0,45,773 0/1:43,38:82:99:176,0,1160 0/0:72,14:86:99:0,189,2208 0/0:53,24:77:4.44:0,4,1443 0/0:50,21:71:99:0,103,1368 0/0:53,33:86:82.23:0,82,1542 0/0:58,17:75:77.32:0,77,1512 0/0:46,24:70:92.59:0,93,1254 0/0:60,18:78:99:0,113,1581 0/0:23,8:31:41.44:0,41,641 0/0:41,18:59:99:0,104,1206 0/0:27,16:43:37.61:0,38,714 0/0:40,14:54:99:0,99,1120 0/0:26,15:41:60.16:0,60,697 0/0:47,10:57:99:0,126,1462 0/0:43,12:55:99:0,117,1355 0/0:26,11:37:46.49:0,46,751 0/0:34,10:44:38.35:0,38,1054 0/0:31,9:40:75.17:0,75,845 0/0:48,32:81:23.44:0,23,1380 0/0:43,11:54:83.61:0,84,1198 0/0:34,11:45:90.26:0,90,1060 0/0:37,11:48:93.23:0,93,1058 0/0:38,11:49:67.68:0,68,1044 0/0:33,14:47:39.88:0,40,915 12 94613898 . G A 8950.08 . AC=3;AF=0.036;AN=84;BaseQRankSum=0.804;DP=8565;DS;Dels=0.00;FS=2.741;HRun=0;HaplotypeScore=5.2459;InbreedingCoeff=0.6543;MQ=59.57;MQ0=0;MQRankSum=-0.081;QD=23.87;ReadPosRankSum=-0.541 GT:AD:DP:GQ:PL 0/0:201,0:201:99:0,533,6526 0/0:191,0:191:99:0,499,6112 0/0:163,0:163:99:0,439,5280 0/0:238,0:238:99:0,629,8178 0/0:239,0:239:99:0,650,8453 0/0:235,0:235:99:0,620,7950 0/0:240,0:240:99:0,638,8202 0/0:236,0:236:99:0,614,7928 0/1:92,96:189:99:2740,0,2394 1/1:0,186:186:99:6210,497,0 0/0:194,0:194:99:0,524,6303 0/0:197,0:197:99:0,527,6403 0/0:165,0:165:99:0,442,5262 0/0:181,0:181:99:0,484,5886 0/0:250,0:250:99:0,680,8005 0/0:154,0:154:99:0,424,5136 0/0:187,0:187:99:0,499,6051 0/0:187,0:187:99:0,511,6094 0/0:249,1:250:99:0,627,7803 0/0:249,0:249:99:0,656,7950 0/0:245,0:248:99:0,662,7847 0/0:196,0:198:99:0,521,6301 0/0:232,0:233:99:0,641,8353 0/0:216,0:216:99:0,563,7286 0/0:240,0:240:99:0,635,8203 0/0:236,0:236:99:0,590,7715 0/0:150,0:150:99:0,400,4866 0/0:210,0:210:99:0,575,6796 0/0:180,0:180:99:0,475,5775 0/0:195,0:195:99:0,520,6267 0/0:153,0:153:99:0,403,4966 0/0:231,0:231:99:0,617,7470 0/0:238,0:238:99:0,617,7535 0/0:201,1:202:99:0,531,6795 0/0:159,0:160:99:0,439,5259 0/0:206,0:206:99:0,566,6728 0/0:247,1:248:99:0,654,7973 0/0:164,0:164:99:0,430,5191 0/0:176,0:176:99:0,496,5854 0/0:177,0:177:99:0,487,5809 0/0:175,0:176:99:0,472,5685 0/0:196,0:196:99:0,548,6588 12 94631496 . C T 345.44 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.116;DP=2882;Dels=0.00;FS=1.842;HRun=0;HaplotypeScore=0.9693;InbreedingCoeff=-0.0120;MQ=59.37;MQ0=0;MQRankSum=-1.163;QD=6.28;ReadPosRankSum=1.249 GT:AD:DP:GQ:PL 0/0:67,1:68:99:0,145,2090 0/0:69,0:69:99:0,184,2197 0/0:50,0:50:99:0,135,1546 0/0:90,1:91:99:0,240,3147 0/0:75,0:75:99:0,211,2713 0/0:72,0:72:99:0,190,2449 0/0:61,0:61:99:0,163,2104 0/0:72,0:72:99:0,196,2526 0/0:71,0:71:99:0,196,2321 0/0:68,0:68:99:0,183,2155 0/1:39,16:55:99:392,0,1107 0/0:72,0:72:99:0,190,2244 0/0:53,0:53:99:0,141,1698 0/0:55,0:55:99:0,159,1843 0/0:235,0:235:99:0,593,7149 0/0:47,0:47:99:0,135,1574 0/0:60,0:60:99:0,162,1917 0/0:72,0:72:99:0,202,2323 0/0:94,1:95:99:0,219,2995 0/0:86,0:86:99:0,226,2662 0/0:88,1:89:99:0,206,2805 0/0:50,0:50:99:0,135,1616 0/0:86,0:87:99:0,247,3125 0/0:78,0:78:99:0,214,2761 0/0:68,0:68:99:0,187,2365 0/0:70,0:70:99:0,193,2444 0/0:54,0:54:99:0,150,1756 0/0:58,0:58:99:0,165,1916 0/0:33,0:33:90.25:0,90,1038 0/0:54,0:54:99:0,159,1850 0/0:55,0:55:99:0,147,1749 0/0:83,0:83:99:0,220,2666 0/0:60,0:60:99:0,162,1891 0/0:66,0:66:99:0,184,2142 0/0:53,0:53:99:0,150,1794 0/0:54,0:54:99:0,150,1767 0/0:63,0:64:99:0,171,2034 0/0:46,0:46:99:0,129,1491 0/0:61,0:61:99:0,177,2050 0/0:77,0:77:99:0,211,2474 0/0:46,0:46:99:0,117,1363 0/0:49,0:49:99:0,144,1706 12 94642023 . C T 3802.88 . AC=6;AF=0.071;AN=84;BaseQRankSum=-14.062;DP=1951;Dels=0.00;FS=12.457;HRun=0;HaplotypeScore=0.4943;InbreedingCoeff=-0.0769;MQ=59.20;MQ0=0;MQRankSum=1.439;QD=13.63;ReadPosRankSum=-1.072 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,117,1451 0/0:39,0:39:99:0,102,1278 0/0:38,0:38:99:0,111,1345 0/1:30,32:62:99:912,0,969 0/1:26,24:50:99:667,0,834 0/0:63,0:63:99:0,172,2307 0/0:59,0:59:99:0,169,2239 0/0:60,0:60:99:0,159,2100 0/0:29,0:29:78.25:0,78,993 0/0:35,0:35:99:0,102,1272 0/0:37,1:38:99:0,108,1342 0/0:29,0:29:72.23:0,72,929 0/1:16,22:38:99:586,0,458 0/0:30,0:30:90.29:0,90,1136 0/0:131,0:131:99:0,358,4517 0/1:13,14:27:99:396,0,399 0/0:47,0:47:99:0,129,1610 0/0:42,0:42:99:0,120,1499 0/1:35,23:58:99:633,0,1068 0/1:21,23:44:99:609,0,643 0/0:55,1:56:99:0,147,1857 0/0:38,0:38:99:0,102,1287 0/0:73,0:73:99:0,205,2763 0/0:58,0:58:99:0,160,2144 0/0:89,0:90:99:0,244,3316 0/0:52,0:52:99:0,141,1914 0/0:36,0:37:99:0,102,1275 0/0:38,0:38:99:0,114,1405 0/0:37,0:37:99:0,99,1246 0/0:36,0:36:96.30:0,96,1217 0/0:43,0:43:99:0,126,1560 0/0:44,0:44:99:0,120,1520 0/0:31,0:31:81.26:0,81,1036 0/0:41,0:41:99:0,117,1455 0/0:26,0:26:75.24:0,75,939 0/0:46,0:46:99:0,123,1558 0/0:36,0:37:96.29:0,96,1206 0/0:49,0:50:99:0,144,1772 0/0:34,0:34:99:0,99,1238 0/0:42,0:42:99:0,108,1384 0/0:43,0:43:99:0,120,1509 0/0:39,0:39:99:0,105,1326 12 94658920 . C T 7477.60 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.658;DP=8946;DS;Dels=0.00;FS=0.474;HRun=0;HaplotypeScore=4.3033;InbreedingCoeff=-0.0244;MQ=60.28;MQ0=0;MQRankSum=-1.137;QD=14.96;ReadPosRankSum=3.562 GT:AD:DP:GQ:PL 0/0:194,0:194:99:0,535,6320 0/0:225,0:225:99:0,626,7425 0/0:174,0:174:99:0,478,5680 0/0:249,0:250:99:0,713,8962 0/0:248,0:250:99:0,713,8945 0/0:249,0:250:99:0,686,8643 0/0:250,0:250:99:0,710,8902 0/0:249,0:250:99:0,677,8495 0/0:202,0:202:99:0,539,6529 0/0:206,1:207:99:0,525,6636 0/0:179,0:180:99:0,493,5952 0/0:195,0:195:99:0,542,6404 0/0:160,0:160:99:0,436,5216 0/0:211,1:212:99:0,569,6912 0/0:248,0:250:99:0,683,7791 0/0:150,0:151:99:0,421,5001 0/0:229,0:229:99:0,638,7567 0/0:169,0:169:99:0,472,5665 0/1:124,125:250:99:3573,0,3148 0/1:122,128:250:99:3905,0,3219 0/0:248,0:250:99:0,656,7761 0/0:208,0:208:99:0,557,6619 0/0:250,0:250:99:0,737,9274 0/0:250,0:250:99:0,713,8975 0/0:250,0:250:99:0,707,8922 0/0:250,0:250:99:0,698,8808 0/0:133,0:133:99:0,364,4323 0/0:195,0:195:99:0,544,6364 0/0:168,0:168:99:0,451,5438 0/0:203,0:203:99:0,566,6662 0/0:187,0:187:99:0,530,6347 0/0:248,2:250:99:0,653,8206 0/0:218,0:219:99:0,602,7101 0/0:203,0:203:99:0,569,6667 0/0:193,0:193:99:0,533,6328 0/0:223,0:223:99:0,602,7144 0/0:249,0:250:99:0,668,7891 0/0:206,0:206:99:0,569,6728 0/0:183,0:183:99:0,520,6201 0/0:196,0:196:99:0,557,6551 0/0:172,0:174:99:0,499,5867 0/0:206,0:206:99:0,581,6875 12 94658970 . T TGGTGGGG 492.35 . AC=6;AF=0.071;AN=84;BaseQRankSum=23.470;DP=8660;DS;FS=3200.000;HRun=0;HaplotypeScore=1359.5343;InbreedingCoeff=-0.0974;MQ=59.93;MQ0=0;MQRankSum=5.203;QD=0.43;ReadPosRankSum=-39.239 GT:AD:DP:GQ:PL 0/0:190,0:190:64.02:0,64,9190 0/0:213,0:213:99:0,146,9970 0/0:169,0:169:58.67:0,59,7643 0/0:245,0:249:98.54:0,99,12229 0/0:248,0:249:99:0,391,12670 0/0:249,0:241:99:0,238,12751 0/0:233,1:227:99:0,243,11510 0/0:250,0:240:99:0,244,12886 0/0:226,0:226:99:0,160,10840 0/0:200,0:200:99:0,185,10471 0/0:186,0:185:99:0,185,9096 0/0:196,0:194:99:0,117,8906 0/0:162,0:162:60.80:0,61,7468 0/0:204,0:204:99:0,191,10106 0/1:242,0:250:99:182,0,11690 0/1:151,0:151:52.66:53,0,6939 0/0:214,0:214:67.32:0,67,9558 0/0:188,0:188:88.85:0,89,8403 0/0:210,0:216:58.08:0,58,11276 0/0:212,0:213:99:0,255,11192 0/0:216,0:222:1.08:5,0,11573 0/0:212,0:212:99:0,180,9534 0/0:189,0:250:20.12:0,20,11101 0/0:215,1:237:99:0,204,11400 0/0:208,0:244:99:0,230,10928 0/0:196,0:217:99:0,281,10617 0/0:136,0:136:99:0,154,6636 0/0:189,0:189:99:0,178,9603 0/0:176,0:176:41.95:0,42,8005 0/0:212,0:212:99:0,111,10100 0/1:161,0:161:85.66:86,0,7274 0/0:231,0:231:99:0,221,11899 0/0:224,0:224:7.93:0,8,9962 0/1:178,0:178:29.65:30,0,8209 0/0:172,0:172:35.14:0,35,7429 0/1:211,0:211:72.93:73,0,9071 0/1:192,0:203:99:181,0,10459 0/0:203,0:201:99:0,111,9873 0/0:184,0:183:2.75:1,0,8929 0/0:200,0:199:99:0,100,8701 0/0:180,0:178:99:0,124,8323 0/0:183,0:183:99:0,133,8507 12 94658971 . GTT G 48.37 . AC=4;AF=0.048;AN=84;BaseQRankSum=10.762;DP=8291;DS;FS=3200.000;HRun=2;HaplotypeScore=580.6213;InbreedingCoeff=-0.0498;MQ=59.90;MQ0=0;MQRankSum=-0.460;QD=0.07;ReadPosRankSum=-35.908 GT:AD:DP:GQ:PL 0/0:188,0:188:99:0,99,7315 0/0:203,0:203:99:0,209,7862 0/0:166,0:166:68.03:0,68,6034 0/0:181,63:243:99:0,255,10054 0/0:190,60:249:99:0,472,10274 0/0:196,54:241:99:0,271,10358 0/0:183,47:222:99:0,306,9583 0/0:202,48:239:99:0,293,10782 0/0:197,19:216:99:0,172,8618 0/0:195,0:195:99:0,198,8107 0/0:179,0:178:99:0,194,7163 0/0:192,0:190:99:0,135,7242 0/0:156,0:156:99:0,123,6030 0/0:198,0:198:99:0,200,7909 0/0:184,49:233:99:0,156,9583 0/1:147,0:147:20.53:21,0,5383 0/0:210,0:210:95.38:0,95,7654 0/0:182,0:182:99:0,116,6878 0/0:182,0:202:99:0,357,9252 0/0:213,0:213:99:0,282,9008 0/0:180,0:207:99:0,274,9578 0/0:208,0:208:99:0,186,7607 0/0:195,0:195:99:0,330,9590 0/0:211,0:198:99:0,340,9468 0/0:210,0:205:99:0,361,9537 0/0:197,0:193:99:0,372,8736 0/0:132,0:132:99:0,160,5220 0/0:187,0:187:99:0,190,7583 0/0:169,0:169:55.52:0,56,6350 0/0:204,0:204:99:0,116,7881 0/1:161,0:161:49.67:50,0,5840 0/0:183,47:230:99:0,251,9589 0/0:218,0:218:41.78:0,42,7804 0/1:169,0:169:17.75:18,0,6550 0/0:173,0:173:53.20:0,53,5994 0/1:207,0:207:54.88:55,0,7187 0/0:164,0:186:99:0,193,8583 0/0:197,0:195:99:0,123,7702 0/0:178,0:177:20.41:0,20,6846 0/0:195,0:194:99:0,128,7135 0/0:175,0:173:99:0,163,6725 0/0:130,47:177:99:0,200,6912 12 94761701 . T C 10713.56 . AC=8;AF=0.095;AN=84;BaseQRankSum=20.880;DP=3585;DS;Dels=0.00;FS=5.927;HRun=1;HaplotypeScore=0.9520;InbreedingCoeff=-0.1053;MQ=59.62;MQ0=0;MQRankSum=-1.600;QD=14.13;ReadPosRankSum=-0.978 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,132,1617 0/0:74,0:74:99:0,205,2521 0/0:65,0:65:99:0,181,2220 0/0:160,0:160:99:0,460,5655 0/0:151,0:151:99:0,424,5295 0/0:155,0:155:99:0,418,5346 0/0:144,0:144:99:0,400,5040 0/1:80,57:137:99:1660,0,2498 0/1:41,34:75:99:1041,0,1166 0/1:33,24:57:99:695,0,964 0/0:63,0:63:99:0,184,2220 0/0:61,1:62:99:0,144,2111 0/0:55,0:55:99:0,144,1767 0/0:68,0:68:99:0,193,2332 0/0:226,0:226:99:0,620,7548 0/0:49,0:49:99:0,138,1705 0/0:75,0:75:99:0,214,2625 0/1:34,33:67:99:1019,0,1032 0/0:88,0:88:99:0,238,2913 0/0:76,0:76:99:0,220,2688 0/0:69,0:69:99:0,184,2280 0/0:57,0:57:99:0,153,1909 0/0:166,0:166:99:0,469,5815 0/1:85,77:162:99:2495,0,2572 0/0:141,0:141:99:0,391,4858 0/1:81,66:147:99:2142,0,2491 0/0:38,0:38:99:0,102,1264 0/0:58,0:58:99:0,166,2021 0/0:64,0:64:99:0,178,2189 0/1:25,34:59:99:1036,0,673 0/1:32,22:54:99:627,0,917 0/0:70,0:70:99:0,193,2364 0/0:55,0:55:99:0,153,1883 0/0:60,0:60:99:0,175,2137 0/0:72,0:72:99:0,202,2466 0/0:57,0:57:99:0,159,1968 0/0:64,0:64:99:0,175,2118 0/0:57,0:57:99:0,169,2011 0/0:65,0:65:99:0,193,2321 0/0:62,0:62:99:0,175,2106 0/0:54,0:54:99:0,144,1780 0/0:61,0:61:99:0,163,2042 12 94796955 . A G 987.24 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.449;DP=2136;Dels=0.00;FS=3.669;HRun=1;HaplotypeScore=0.5333;InbreedingCoeff=-0.0244;MQ=59.50;MQ0=0;MQRankSum=0.958;QD=12.34;ReadPosRankSum=-1.988 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,129,1566 0/0:45,0:45:99:0,126,1522 0/0:52,0:52:99:0,147,1817 0/0:62,0:62:99:0,175,2149 0/0:83,0:83:99:0,235,2939 0/0:83,0:83:99:0,226,2915 0/0:69,0:69:99:0,190,2415 0/0:64,0:64:99:0,181,2277 0/1:25,19:44:99:530,0,730 0/0:39,0:39:99:0,111,1337 0/1:20,16:36:99:520,0,521 0/0:46,0:46:99:0,126,1564 0/0:42,0:42:99:0,111,1370 0/0:36,0:36:99:0,102,1253 0/0:142,0:142:99:0,376,4602 0/0:40,0:40:99:0,108,1346 0/0:45,1:46:86.94:0,87,1438 0/0:27,0:27:78.24:0,78,959 0/0:52,0:52:99:0,144,1770 0/0:51,0:51:99:0,129,1640 0/0:49,0:49:99:0,138,1686 0/0:36,0:36:90.28:0,90,1132 0/0:94,0:94:99:0,256,3180 0/0:74,0:74:99:0,208,2584 0/0:64,0:64:99:0,184,2315 0/0:62,0:62:99:0,166,2104 0/0:27,0:27:75.23:0,75,924 0/0:44,0:44:99:0,114,1416 0/0:32,0:32:84.23:0,84,992 0/0:40,0:40:99:0,114,1398 0/0:51,0:51:99:0,135,1682 0/0:52,0:52:99:0,123,1589 0/0:24,0:24:63.19:0,63,783 0/0:40,0:40:99:0,111,1384 0/0:32,0:32:90.28:0,90,1126 0/0:69,0:70:99:0,181,2250 0/0:34,0:34:90.28:0,90,1116 0/0:38,0:38:99:0,105,1299 0/0:41,0:41:99:0,123,1475 0/0:48,0:48:99:0,129,1618 0/0:35,0:35:99:0,102,1236 0/0:46,0:46:99:0,129,1607 12 94972290 . C T 15676.15 . AC=42;AF=0.500;AN=84;BaseQRankSum=-8.139;DP=1037;Dels=0.00;FS=1.961;HRun=1;HaplotypeScore=0.5823;InbreedingCoeff=-0.4286;MQ=59.28;MQ0=0;MQRankSum=-0.915;QD=17.65;ReadPosRankSum=-0.472 GT:AD:DP:GQ:PL 0/1:14,8:22:99:232,0,422 0/1:10,10:20:99:308,0,297 0/1:16,5:21:99:122,0,528 1/1:0,39:39:99:1415,114,0 1/1:0,31:31:93.30:1202,93,0 0/1:17,8:25:99:205,0,598 0/1:9,10:19:99:340,0,309 0/1:14,5:19:93.36:93,0,489 0/1:10,8:18:99:242,0,324 0/1:13,9:22:99:274,0,404 0/0:24,0:24:72.21:0,72,891 0/1:10,10:20:99:309,0,309 0/1:7,9:16:99:276,0,214 0/1:17,6:23:99:151,0,562 0/1:30,38:68:99:1187,0,807 0/1:11,9:20:99:239,0,362 1/1:0,15:15:45.13:549,45,0 1/1:0,20:20:60.19:750,60,0 0/1:15,17:32:99:555,0,400 0/1:17,21:38:99:597,0,468 1/1:0,34:34:90.25:1113,90,0 0/1:18,13:31:99:364,0,555 0/1:16,15:31:99:476,0,558 0/0:25,0:25:69.23:0,69,941 0/0:38,0:38:99:0,105,1397 0/1:8,5:13:99:156,0,259 1/1:0,14:14:42.13:509,42,0 0/1:8,8:16:99:219,0,249 0/1:8,11:19:99:354,0,240 0/0:23,0:23:69.21:0,69,852 0/0:22,0:22:57.18:0,57,712 0/1:23,22:45:99:646,0,657 0/1:7,10:17:99:322,0,214 0/0:16,0:17:45.14:0,45,559 0/1:8,10:18:99:305,0,251 0/1:9,13:23:99:388,0,255 0/1:12,8:20:99:203,0,396 0/1:9,9:18:99:279,0,282 0/1:17,16:33:99:460,0,541 0/1:13,13:26:99:382,0,389 0/1:13,7:20:99:192,0,427 0/1:13,9:22:99:261,0,419 12 95228286 . G C 912.93 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.964;DP=2404;Dels=0.00;FS=1.635;HRun=0;HaplotypeScore=0.9263;InbreedingCoeff=-0.0120;MQ=59.23;MQ0=0;MQRankSum=1.673;QD=17.23;ReadPosRankSum=0.002 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,150,1885 0/0:50,0:50:99:0,141,1793 0/0:48,0:48:99:0,141,1783 0/0:67,0:67:99:0,181,2427 0/0:62,0:62:99:0,184,2465 0/0:61,0:61:99:0,169,2253 0/0:47,0:47:99:0,129,1731 0/0:62,0:62:99:0,163,2180 0/0:38,0:38:99:0,105,1363 0/0:47,0:48:99:0,132,1688 0/0:49,0:49:99:0,138,1730 0/0:39,0:39:99:0,114,1436 0/0:35,0:35:93.30:0,93,1207 0/0:43,0:43:99:0,123,1549 0/0:169,0:169:99:0,454,5723 0/0:45,0:45:99:0,129,1645 0/0:55,0:55:99:0,160,2025 0/0:45,0:45:99:0,129,1616 0/0:109,0:111:99:0,289,3697 0/0:105,0:105:99:0,277,3578 0/0:72,0:72:99:0,199,2507 0/0:55,0:55:99:0,150,1869 0/0:82,0:82:99:0,223,2990 0/0:45,0:45:99:0,123,1662 0/1:23,30:53:99:959,0,715 0/0:57,0:57:99:0,147,2002 0/0:31,0:31:84.26:0,84,1089 0/0:62,0:62:99:0,169,2103 0/0:37,0:37:99:0,108,1372 0/0:51,0:51:99:0,147,1858 0/0:37,0:37:99:0,105,1347 0/0:75,0:75:99:0,187,2420 0/0:45,0:45:99:0,129,1633 0/0:43,0:43:99:0,129,1609 0/0:44,0:44:99:0,129,1598 0/0:61,1:62:99:0,140,2144 0/0:80,0:80:99:0,220,2767 0/0:53,0:53:99:0,147,1838 0/0:40,0:40:99:0,111,1414 0/0:52,0:52:99:0,153,1926 0/0:53,2:55:99:0,115,1813 0/0:41,0:41:99:0,117,1481 12 95531442 . T C 6833.72 . AC=14;AF=0.167;AN=84;BaseQRankSum=5.191;DP=1636;Dels=0.00;FS=3.677;HRun=0;HaplotypeScore=0.6971;InbreedingCoeff=0.1429;MQ=59.50;MQ0=0;MQRankSum=-0.316;QD=17.94;ReadPosRankSum=-2.809 GT:AD:DP:GQ:PL 0/1:16,13:29:99:402,0,470 1/1:0,20:20:54.17:688,54,0 0/1:8,14:22:99:443,0,236 0/0:73,0:73:99:0,193,2491 0/0:64,0:64:99:0,184,2359 0/0:52,0:52:99:0,150,1980 0/0:48,0:48:99:0,138,1804 0/0:59,0:59:99:0,169,2188 0/0:34,0:34:93.29:0,93,1177 0/0:24,0:24:69.22:0,69,858 0/0:31,0:31:84.26:0,84,1054 0/0:43,0:43:99:0,126,1568 0/0:29,0:29:84.25:0,84,1035 0/0:30,0:30:78.24:0,78,1000 0/0:93,0:93:99:0,259,3205 0/0:27,0:27:78.23:0,78,952 0/0:31,1:32:51.70:0,52,1045 0/0:30,0:30:87.28:0,87,1104 0/1:29,20:49:99:596,0,864 0/1:31,22:53:99:597,0,822 0/0:48,0:48:99:0,123,1559 0/0:25,0:25:72.23:0,72,904 0/0:50,0:50:99:0,138,1766 0/0:67,0:67:99:0,193,2500 0/0:57,0:57:99:0,141,1899 0/0:61,0:61:99:0,175,2269 0/1:14,15:29:99:496,0,375 0/1:17,15:32:99:462,0,538 0/0:30,0:30:87.28:0,87,1094 0/1:8,19:27:99:591,0,224 0/1:16,14:30:99:411,0,520 0/0:28,0:28:78.24:0,78,983 0/1:14,8:22:99:211,0,450 0/0:28,0:28:81.25:0,81,1007 0/0:27,0:27:78.23:0,78,961 0/0:25,0:25:69.22:0,69,876 0/1:12,19:31:99:579,0,358 0/0:31,0:31:90.28:0,90,1125 1/1:1,36:37:72.78:1358,73,0 0/0:32,0:32:93.29:0,93,1155 0/0:29,0:29:84.27:0,84,1052 0/0:48,0:48:99:0,132,1649 12 95877034 . AAAG A 761 . AC=1;AF=0.012;AN=84;BaseQRankSum=7.791;DP=3098;DS;FS=10.515;HRun=0;HaplotypeScore=254.6124;InbreedingCoeff=-0.0120;MQ=59.30;MQ0=0;MQRankSum=1.252;QD=15.53;ReadPosRankSum=-0.837 GT:AD:DP:GQ:PL 0/1:28,21:49:99:816,0,750 0/0:74,0:74:99:0,141,2758 0/0:64,0:64:99:0,138,2764 0/0:104,0:104:99:0,235,4637 0/0:86,0:85:99:0,205,4132 0/0:110,0:107:99:0,253,5043 0/0:104,0:103:99:0,202,3956 0/0:90,0:88:99:0,199,3864 0/0:59,0:59:99:0,120,2422 0/0:42,0:42:99:0,105,2105 0/0:67,0:67:99:0,166,3238 0/0:68,1:69:99:0,130,3349 0/0:60,0:60:99:0,132,2580 0/0:59,0:59:99:0,138,2679 0/0:172,0:172:99:0,473,9437 0/0:48,0:48:99:0,105,2021 0/0:69,0:69:99:0,160,3087 0/0:59,1:60:99:0,103,2783 0/0:78,0:78:99:0,175,3455 0/0:103,0:103:99:0,247,4688 0/0:89,0:89:99:0,205,4135 0/0:39,0:39:99:0,99,1975 0/0:102,0:102:99:0,217,4425 0/0:95,1:93:99:0,175,4165 0/0:77,0:72:99:0,190,3788 0/0:102,0:101:99:0,235,4665 0/0:41,0:41:78.27:0,78,1570 0/0:81,0:80:99:0,190,3801 0/0:65,0:65:99:0,138,2659 0/0:58,0:58:99:0,114,2226 0/0:57,0:57:99:0,120,2339 0/0:83,0:83:99:0,203,4071 0/0:56,0:56:99:0,126,2532 0/0:62,0:62:99:0,159,2981 0/0:70,0:70:99:0,141,2808 0/0:65,0:65:99:0,165,3264 0/0:82,0:82:99:0,183,3586 0/0:62,0:62:99:0,154,3045 0/0:60,0:60:99:0,147,2821 0/0:62,0:62:99:0,154,3025 0/0:64,0:64:99:0,144,2774 0/0:58,0:58:99:0,129,2548 12 96077312 . C T 18116.06 . AC=20;AF=0.238;AN=84;BaseQRankSum=-4.981;DP=2551;Dels=0.00;FS=4.344;HRun=0;HaplotypeScore=1.6473;InbreedingCoeff=0.2125;MQ=59.16;MQ0=0;MQRankSum=1.669;QD=18.54;ReadPosRankSum=-0.780 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,189,2239 0/0:42,0:42:99:0,117,1412 0/0:41,0:41:99:0,108,1342 0/0:107,0:107:99:0,307,3992 0/0:83,0:83:99:0,238,3056 0/0:47,0:47:99:0,138,1750 0/0:52,0:52:99:0,153,2027 0/1:31,25:56:99:780,0,946 0/0:56,0:56:99:0,165,1996 0/1:33,27:60:99:719,0,934 0/0:53,0:53:99:0,153,1872 0/1:27,26:53:99:744,0,807 0/0:36,0:36:93.27:0,93,1131 0/1:25,30:55:99:939,0,727 0/1:89,73:163:99:2099,0,2517 1/1:0,46:46:99:1656,135,0 0/1:25,20:45:99:547,0,752 0/0:42,0:42:99:0,114,1399 0/0:73,0:73:99:0,205,2393 0/0:105,0:105:99:0,283,3485 0/1:33,40:73:99:1133,0,825 1/1:1,57:58:99:1984,138,0 0/0:81,0:81:99:0,217,2792 0/0:54,0:54:99:0,141,1820 0/0:65,0:65:99:0,162,2116 0/0:59,0:59:99:0,153,1968 0/0:45,1:47:97.12:0,97,1516 0/1:38,41:79:99:1228,0,1134 0/1:13,22:35:99:664,0,328 0/0:44,2:46:96.26:0,96,1532 0/0:52,0:52:99:0,153,1890 0/0:73,0:73:99:0,202,2425 0/0:66,0:66:99:0,187,2226 0/1:26,26:52:99:827,0,721 1/1:1,49:50:99:1615,104,0 0/0:52,0:52:99:0,141,1683 0/0:66,0:69:99:0,184,2223 0/0:54,0:54:99:0,150,1779 0/0:52,0:52:99:0,153,1904 0/1:22,37:59:99:1145,0,590 1/1:2,42:44:52.28:1333,52,0 0/1:25,24:49:99:702,0,712 12 96284650 . A G 33604.49 . AC=49;AF=0.583;AN=84;BaseQRankSum=-7.403;DP=1988;Dels=0.00;FS=8.067;HRun=1;HaplotypeScore=1.1526;InbreedingCoeff=0.1673;MQ=59.41;MQ0=0;MQRankSum=0.675;QD=20.50;ReadPosRankSum=0.577 GT:AD:DP:GQ:PL 0/1:17,11:28:99:299,0,554 0/1:20,19:39:99:509,0,544 1/1:0,38:38:99:1233,108,0 0/1:39,45:84:99:1213,0,1185 0/1:41,25:66:99:666,0,1214 1/1:0,71:71:99:2373,181,0 0/1:25,27:52:99:717,0,680 1/1:1,45:46:75.03:1366,75,0 0/0:33,0:33:96.30:0,96,1185 0/1:10,11:21:99:275,0,313 0/0:34,0:34:84.27:0,84,1084 0/1:12,9:21:99:244,0,353 0/0:30,0:30:81.24:0,81,1002 1/1:0,30:30:84.20:978,84,0 0/1:78,56:134:99:1369,0,2174 0/1:17,17:34:99:417,0,445 0/1:30,21:51:99:541,0,848 0/0:37,0:37:99:0,102,1278 0/0:68,0:68:99:0,169,2132 0/1:44,28:72:99:765,0,1217 1/1:0,69:69:99:2033,168,0 1/1:0,45:45:99:1374,114,0 0/1:41,41:82:99:1070,0,1219 1/1:0,53:53:99:1685,135,0 1/1:1,56:58:99:1814,106,0 1/1:1,49:50:89.39:1512,89,0 0/0:36,0:36:99:0,99,1244 0/1:23,22:45:99:590,0,605 0/0:35,0:35:78.25:0,78,1032 1/1:0,40:40:99:1262,102,0 1/1:0,27:27:69.20:848,69,0 0/1:26,37:63:99:1038,0,657 1/1:0,37:37:99:1247,102,0 1/1:0,24:24:66.19:794,66,0 1/1:0,30:30:81.22:952,81,0 1/1:0,47:47:99:1486,126,0 0/1:32,34:66:99:884,0,966 1/1:0,32:32:84.26:1051,84,0 0/0:37,0:37:99:0,105,1312 0/0:39,0:39:99:0,108,1363 0/1:16,17:33:99:440,0,448 0/1:29,22:51:99:558,0,853 12 96292170 . C G 26438.80 . AC=14;AF=0.167;AN=84;BaseQRankSum=19.007;DP=5908;DS;Dels=0.00;FS=12.394;HRun=0;HaplotypeScore=2.9968;InbreedingCoeff=-0.2000;MQ=59.45;MQ0=0;MQRankSum=0.360;QD=13.80;ReadPosRankSum=0.993 GT:AD:DP:GQ:PL 0/0:99,0:99:99:0,268,3342 0/1:42,27:69:99:744,0,1277 0/1:35,26:62:99:711,0,975 0/1:146,104:250:99:3018,0,4413 0/1:120,111:231:99:3576,0,3619 0/1:129,81:210:99:2463,0,3785 0/0:237,0:237:99:0,617,8378 0/1:113,103:216:99:3061,0,3434 0/0:121,0:121:99:0,307,3891 0/1:41,31:72:99:888,0,1152 0/0:101,0:101:99:0,268,3402 0/0:93,0:93:99:0,250,3120 0/0:93,0:93:99:0,247,3115 0/0:102,0:102:99:0,271,3403 0/0:250,0:250:99:0,680,8404 0/0:85,0:85:99:0,229,2869 0/0:128,0:128:99:0,325,4142 0/0:108,0:108:99:0,295,3695 0/0:222,0:223:99:0,566,7189 0/0:223,0:223:99:0,590,7457 0/0:204,0:204:99:0,515,6552 0/0:113,0:113:99:0,316,3954 0/0:250,0:250:99:0,692,9394 0/1:87,76:164:99:2444,0,2716 0/0:250,0:250:99:0,662,8986 0/1:94,103:197:99:3133,0,2751 0/0:88,0:88:99:0,247,3095 0/0:89,0:89:99:0,238,2970 0/0:106,1:107:99:0,259,3636 0/1:51,65:116:99:1878,0,1560 0/1:35,28:63:99:807,0,1048 0/0:209,0:209:99:0,557,7033 0/0:133,0:133:99:0,328,4159 0/1:51,42:93:99:1287,0,1435 0/1:54,41:97:99:1282,0,1535 0/0:104,0:105:99:0,277,3486 0/0:185,0:185:99:0,454,5803 0/0:95,0:95:99:0,259,3220 0/0:113,0:113:99:0,325,4034 0/0:88,0:88:99:0,247,3063 0/1:38,38:76:99:1145,0,1112 0/0:100,0:100:99:0,280,3487 12 96337183 . A G 791.28 . AC=33;AF=0.611;AN=54;BaseQRankSum=-0.059;DP=47;Dels=0.00;FS=1.204;HRun=1;HaplotypeScore=0.1030;InbreedingCoeff=0.1762;MQ=57.09;MQ0=0;MQRankSum=0.605;QD=22.61;ReadPosRankSum=-2.383 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:36,3,0 0/1:1,1:2:27.42:27,0,31 0/0:1,0:1:3.01:0,3,39 1/1:0,1:1:3.01:39,3,0 ./. ./. 0/0:1,0:1:3.01:0,3,38 ./. 1/1:0,2:2:6.02:78,6,0 ./. 1/1:0,2:2:3.01:45,3,0 ./. 0/0:1,0:1:3.01:0,3,38 ./. 0/1:2,3:6:32.73:100,0,33 1/1:0,2:2:6.02:72,6,0 ./. 1/1:0,1:1:3.01:37,3,0 1/1:0,3:3:6.02:78,6,0 1/1:0,1:1:3.01:38,3,0 0/0:3,0:3:6.02:0,6,76 0/0:3,0:3:9.03:0,9,111 ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,38 ./. 0/0:1,0:1:3.01:0,3,36 1/1:0,1:1:3.01:38,3,0 1/1:0,1:1:3.01:35,3,0 ./. 0/1:1,1:2:20.67:26,0,21 1/1:0,2:2:3.01:45,3,0 1/1:0,2:2:3.01:45,3,0 1/1:0,2:2:6.02:70,6,0 0/1:1,1:2:27.42:32,0,27 0/0:1,0:1:3.01:0,3,38 0/1:0,1:1:1.76:34,3,0 1/1:0,1:1:3.01:35,3,0 ./. ./. 12 96337225 . C T 440.08 . AC=12;AF=0.222;AN=54;BaseQRankSum=-1.221;DP=61;Dels=0.00;FS=6.168;HRun=1;HaplotypeScore=0.1215;InbreedingCoeff=0.4244;MQ=57.21;MQ0=0;MQRankSum=-0.648;QD=25.89;ReadPosRankSum=0.549 GT:AD:DP:GQ:PL 1/1:0,3:3:9.03:107,9,0 0/0:2,0:2:6.02:0,6,75 0/0:3,0:3:9.02:0,9,101 ./. 1/1:0,1:1:3.01:39,3,0 ./. ./. ./. 0/0:4,0:4:12.03:0,12,136 ./. 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:6.02:0,6,83 0/0:2,0:2:6.02:0,6,79 0/0:2,0:2:6.02:0,6,76 0/0:6,0:6:15.05:0,15,201 0/0:3,0:3:9.03:0,9,115 0/0:2,0:2:6.02:0,6,75 0/1:0,1:1:1.76:39,3,0 1/1:0,3:3:9.02:93,9,0 0/0:4,0:4:12.04:0,12,153 0/0:2,0:2:3.01:0,3,39 0/0:2,0:2:6.02:0,6,76 ./. ./. ./. ./. 0/0:2,0:2:6.02:0,6,74 ./. 0/0:1,0:1:3.01:0,3,39 1/1:0,5:5:15.05:184,15,0 0/0:1,0:1:3.01:0,3,36 ./. 0/1:1,1:2:27.42:27,0,32 1/1:0,2:2:6.02:71,6,0 ./. 0/0:1,0:1:3.01:0,3,31 ./. 0/0:1,0:1:3:0,3,28 ./. 0/0:1,0:1:3.01:0,3,38 0/0:1,0:1:3.01:0,3,38 ./. 12 96346594 . T C 28565.39 . AC=28;AF=0.333;AN=84;BaseQRankSum=29.379;DP=2595;Dels=0.00;FS=2.519;HRun=1;HaplotypeScore=0.5445;InbreedingCoeff=0.1429;MQ=59.58;MQ0=0;MQRankSum=0.834;QD=20.64;ReadPosRankSum=-0.733 GT:AD:DP:GQ:PL 0/1:20,23:43:99:725,0,553 0/0:38,0:38:99:0,111,1336 0/1:12,11:23:99:333,0,365 1/1:0,124:124:99:4655,340,0 1/1:0,107:107:99:4058,295,0 0/0:133,0:133:99:0,376,4870 0/1:51,52:103:99:1710,0,1533 0/0:132,0:132:99:0,367,4593 0/0:34,0:34:99:0,99,1212 0/1:23,21:44:99:643,0,635 0/1:19,16:35:99:479,0,557 0/0:39,0:39:99:0,108,1337 0/0:51,0:51:99:0,141,1727 0/0:34,0:34:96.30:0,96,1186 0/0:165,0:165:99:0,421,5231 0/0:28,0:28:72.22:0,72,904 0/1:24,24:48:99:734,0,655 1/1:0,37:37:99:1307,102,0 0/1:29,32:61:99:896,0,842 0/0:69,0:69:99:0,190,2362 0/0:70,0:70:99:0,184,2312 0/0:31,0:31:84.26:0,84,1042 0/1:73,54:127:99:1648,0,2188 0/1:62,49:111:99:1597,0,1916 0/1:56,45:101:99:1282,0,1686 0/1:48,42:90:99:1338,0,1416 0/0:39,0:39:99:0,105,1316 0/0:46,0:46:99:0,132,1615 0/0:36,0:36:99:0,102,1257 1/1:0,36:36:96.30:1230,96,0 0/1:22,19:41:99:564,0,665 0/0:72,0:72:99:0,187,2343 0/1:19,17:36:99:488,0,566 1/1:0,41:41:99:1518,120,0 1/1:3,48:51:54.54:1595,55,0 0/1:20,21:41:99:644,0,585 0/1:28,28:56:99:854,0,708 0/0:52,0:52:99:0,150,1839 0/1:17,11:28:99:267,0,541 0/0:44,0:44:99:0,117,1474 0/0:43,0:43:99:0,120,1479 0/0:55,0:55:99:0,141,1796 12 96380975 . A G 2782.52 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.285;DP=4213;DS;Dels=0.00;FS=1.234;HRun=0;HaplotypeScore=1.7149;InbreedingCoeff=-0.0370;MQ=59.37;MQ0=1;MQRankSum=1.021;QD=11.69;ReadPosRankSum=1.167 GT:AD:DP:GQ:PL 0/0:90,0:90:99:0,250,2951 0/0:94,0:95:99:0,256,3049 0/0:66,0:66:99:0,184,2173 0/0:190,0:191:99:0,472,5884 0/0:159,0:163:99:0,433,5316 0/0:147,1:151:99:0,346,4681 0/0:114,0:115:99:0,292,3636 0/0:125,0:126:99:0,319,3925 0/0:89,0:89:99:0,223,2709 0/0:71,0:71:99:0,205,2437 0/0:60,0:61:99:0,175,2071 0/0:79,0:79:99:0,226,2692 0/0:66,0:66:99:0,178,2151 0/0:81,0:81:99:0,229,2722 0/0:247,0:250:99:0,644,7806 0/0:81,0:82:99:0,244,2847 0/1:38,33:71:99:913,0,1090 0/0:76,0:77:99:0,226,2669 0/0:111,0:113:99:0,310,3759 0/0:126,0:128:99:0,334,4073 0/0:116,0:116:99:0,319,3909 0/0:81,0:81:99:0,208,2505 0/0:216,0:217:99:0,584,7085 0/0:105,0:105:99:0,283,3504 0/0:112,0:112:99:0,292,3623 0/0:103,0:103:99:0,262,3205 0/0:53,0:53:99:0,147,1760 0/0:75,0:75:99:0,205,2418 0/0:61,0:61:99:0,178,2110 0/1:51,31:82:99:838,0,1359 0/0:66,0:66:99:0,187,2173 0/0:128,0:128:99:0,331,4071 0/1:43,42:85:99:1107,0,1141 0/0:77,0:79:99:0,220,2627 0/0:91,0:92:99:0,238,2918 0/0:93,0:93:99:0,241,2947 0/0:124,1:125:99:0,328,3980 0/0:93,0:93:99:0,253,3043 0/0:71,0:71:99:0,202,2423 0/0:80,0:81:99:0,217,2593 0/0:57,0:57:99:0,153,1836 0/0:73,0:73:99:0,202,2451 12 96387765 . T A 13795.69 . AC=7;AF=0.083;AN=84;BaseQRankSum=-17.880;DP=7027;DS;Dels=0.00;FS=3.961;HRun=0;HaplotypeScore=2.5559;InbreedingCoeff=-0.0909;MQ=59.57;MQ0=0;MQRankSum=-0.521;QD=14.34;ReadPosRankSum=-0.625 GT:AD:DP:GQ:PL 0/1:61,66:127:99:1893,0,1824 0/1:67,73:140:99:2204,0,1940 0/0:116,0:116:99:0,319,4031 0/0:249,0:250:99:0,686,8853 0/0:250,0:250:99:0,695,9001 0/0:248,0:248:99:0,671,8856 0/0:225,1:226:99:0,582,7981 0/0:228,0:228:99:0,626,8125 0/0:138,0:138:99:0,391,4904 0/0:93,0:93:99:0,271,3371 0/0:119,0:119:99:0,352,4394 0/1:62,53:115:99:1460,0,1888 0/1:66,51:117:99:1383,0,2014 0/0:114,0:114:99:0,319,4027 0/0:250,0:250:99:0,722,8928 0/0:120,0:120:99:0,337,4253 0/0:135,0:135:99:0,385,4814 0/0:120,0:120:99:0,337,4228 0/0:248,0:249:99:0,677,8589 0/1:116,133:250:99:3843,0,3353 0/0:250,0:250:99:0,704,8922 0/0:111,0:111:99:0,316,3956 0/0:250,0:250:99:0,716,9279 0/0:211,0:211:99:0,593,7735 0/0:250,0:250:99:0,674,8793 0/0:218,0:218:99:0,605,7847 0/1:58,46:104:99:1383,0,1694 0/0:134,0:134:99:0,382,4816 0/1:55,54:109:99:1630,0,1634 0/0:112,0:112:99:0,319,3986 0/0:125,0:125:99:0,367,4598 0/0:248,0:250:99:0,713,8964 0/0:177,0:177:99:0,515,6424 0/0:138,0:138:99:0,385,4855 0/0:114,0:114:99:0,310,3930 0/0:146,0:146:99:0,418,5256 0/0:250,0:250:99:0,707,8869 0/0:121,0:121:99:0,340,4244 0/0:148,0:148:99:0,421,5260 0/0:162,0:162:99:0,463,5832 0/0:103,0:103:99:0,298,3741 0/0:138,0:138:99:0,391,4955 12 96400179 . T A 1670.63 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.952;DP=1661;Dels=0.00;FS=5.557;HRun=0;HaplotypeScore=0.3674;InbreedingCoeff=-0.0244;MQ=59.41;MQ0=0;MQRankSum=0.489;QD=16.38;ReadPosRankSum=-1.387 GT:AD:DP:GQ:PL 0/0:25,0:25:75.23:0,75,920 0/0:41,0:41:99:0,111,1394 0/0:31,0:31:87.26:0,87,1097 0/0:66,0:66:99:0,181,2292 0/0:47,0:47:99:0,132,1726 0/1:18,31:49:99:964,0,542 0/1:27,26:53:99:769,0,775 0/0:40,0:40:99:0,114,1458 0/0:53,0:53:99:0,150,1870 0/0:25,0:25:72.22:0,72,899 0/0:20,0:20:60.19:0,60,744 0/0:33,0:33:90.27:0,90,1105 0/0:38,0:38:99:0,108,1339 0/0:28,0:28:81.24:0,81,1001 0/0:104,0:104:99:0,253,3229 0/0:26,0:26:72.22:0,72,890 0/0:34,0:34:93.29:0,93,1175 0/0:47,0:47:99:0,117,1521 0/0:44,0:44:99:0,117,1466 0/0:51,0:51:99:0,129,1641 0/0:58,0:58:99:0,153,1937 0/0:22,0:22:60.19:0,60,750 0/0:54,0:54:99:0,156,1965 0/0:46,0:46:99:0,126,1615 0/0:46,0:46:99:0,129,1652 0/0:48,0:48:99:0,126,1662 0/0:16,0:16:45.14:0,45,567 0/0:50,0:50:99:0,138,1749 0/0:25,0:25:72.23:0,72,899 0/0:32,0:32:84.26:0,84,1060 0/0:30,0:30:81.23:0,81,1005 0/0:37,0:37:96.30:0,96,1229 0/0:34,0:34:84.27:0,84,1096 0/0:30,0:30:78.25:0,78,994 0/0:34,0:34:93.26:0,93,1154 0/0:29,0:29:81.24:0,81,1010 0/0:41,0:41:99:0,99,1285 0/0:44,0:44:99:0,123,1534 0/0:38,0:38:99:0,108,1336 0/0:34,0:34:96.28:0,96,1179 0/0:23,0:23:66.21:0,66,835 0/0:35,0:35:99:0,99,1242 12 96676330 . C A 12080.83 . AC=13;AF=0.155;AN=84;BaseQRankSum=-8.813;DP=3582;Dels=0.00;FS=12.657;HRun=1;HaplotypeScore=1.0533;InbreedingCoeff=-0.0011;MQ=59.47;MQ0=0;MQRankSum=0.648;QD=11.97;ReadPosRankSum=-2.103 GT:AD:DP:GQ:PL 0/0:69,0:69:99:0,172,2214 0/1:41,22:63:99:524,0,1183 0/1:22,20:42:99:538,0,713 0/0:217,0:217:99:0,536,7356 0/0:190,0:190:99:0,461,6398 0/1:101,86:187:99:2320,0,2805 0/0:163,0:163:99:0,409,5632 0/1:97,54:151:99:1371,0,2965 0/0:63,1:64:99:0,125,2047 0/0:59,0:59:99:0,153,1956 0/1:24,15:39:99:412,0,667 0/1:15,18:33:99:490,0,438 0/0:52,0:52:99:0,141,1778 1/1:0,39:39:99:1253,99,0 0/0:232,0:232:99:0,542,7113 0/0:36,0:36:99:0,99,1254 0/0:50,0:50:99:0,135,1720 0/0:47,0:47:99:0,123,1594 0/0:80,0:80:99:0,196,2500 0/0:42,0:42:99:0,108,1379 0/0:72,0:72:99:0,177,2232 0/1:23,29:52:99:751,0,616 0/0:245,0:245:99:0,581,8119 0/1:82,59:141:99:1671,0,2471 0/1:90,79:169:99:2103,0,2522 0/0:156,0:156:99:0,379,5237 0/1:25,9:34:99:220,0,685 0/0:46,0:46:99:0,123,1568 0/1:39,20:59:99:427,0,1141 0/0:60,0:60:99:0,159,2019 0/0:41,0:41:99:0,108,1396 0/0:66,0:66:99:0,163,2097 0/0:47,0:47:99:0,120,1555 0/0:63,1:64:99:0,119,1971 0/0:46,0:46:99:0,120,1535 0/0:63,0:63:99:0,163,2096 0/0:70,0:70:99:0,178,2301 0/0:57,0:57:99:0,141,1825 0/0:52,0:52:99:0,123,1613 0/0:71,0:71:99:0,184,2297 0/0:52,0:52:99:0,132,1699 0/0:64,0:64:99:0,169,2138 12 96728587 . G A 725.55 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.846;DP=1761;Dels=0.00;FS=0.826;HRun=1;HaplotypeScore=0.7836;InbreedingCoeff=-0.0244;MQ=59.43;MQ0=0;MQRankSum=0.280;QD=11.70;ReadPosRankSum=-0.044 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,105,1338 0/0:34,0:34:93.29:0,93,1192 0/0:28,0:28:78.24:0,78,994 0/0:64,0:64:99:0,175,2316 0/0:60,0:60:99:0,175,2338 0/0:49,0:49:99:0,135,1828 0/0:66,0:66:99:0,187,2512 0/0:50,0:50:99:0,144,1951 0/0:37,0:37:99:0,102,1302 0/0:36,0:36:96.27:0,96,1190 0/0:34,0:34:87.28:0,87,1145 0/0:30,0:30:81.25:0,81,1021 0/0:33,1:34:60.17:0,60,1152 0/0:34,0:34:93.29:0,93,1187 0/0:110,0:111:99:0,283,3693 0/0:14,0:14:42.13:0,42,524 0/0:36,0:36:99:0,102,1308 0/0:34,0:34:96.27:0,96,1201 0/0:47,0:47:99:0,126,1599 0/0:44,0:44:99:0,105,1402 0/1:27,18:45:99:537,0,709 0/1:9,8:17:99:251,0,290 0/0:83,0:83:99:0,226,3084 0/0:46,0:46:99:0,123,1683 0/0:65,0:65:99:0,190,2563 0/0:52,0:52:99:0,141,1924 0/0:23,0:23:63.18:0,63,791 0/0:43,0:43:99:0,120,1544 0/0:36,0:36:99:0,105,1342 0/0:38,0:38:87.28:0,87,1158 0/0:31,0:31:93.29:0,93,1175 0/0:53,0:53:99:0,138,1804 0/0:34,0:34:96.31:0,96,1227 0/0:24,0:24:63.20:0,63,807 0/0:32,0:32:87.26:0,87,1094 0/0:36,1:37:80.62:0,81,1228 0/0:30,0:30:84.27:0,84,1078 0/0:43,0:44:99:0,114,1480 0/0:34,0:34:99:0,99,1236 0/0:43,0:43:99:0,123,1559 0/0:38,0:38:99:0,99,1296 0/0:32,0:32:96.28:0,96,1200 12 97102578 . G A 65029.74 . AC=70;AF=0.833;AN=84;BaseQRankSum=-22.155;DP=2451;DS;Dels=0.00;FS=4.601;HRun=2;HaplotypeScore=0.6668;InbreedingCoeff=-0.0286;MQ=59.23;MQ0=0;MQRankSum=0.109;QD=27.63;ReadPosRankSum=-1.249 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1456,120,0 1/1:0,65:65:99:2147,175,0 1/1:0,47:47:99:1541,126,0 0/1:43,34:77:99:864,0,1383 1/1:0,67:67:99:2408,193,0 1/1:0,68:68:99:2413,190,0 1/1:0,75:75:99:2699,214,0 0/1:39,36:75:99:1049,0,1184 1/1:0,68:68:99:2182,175,0 1/1:0,37:37:99:1263,105,0 1/1:0,46:46:99:1571,129,0 0/1:28,24:52:99:685,0,822 0/1:21,36:57:99:1040,0,634 1/1:0,51:51:99:1803,150,0 1/1:0,169:169:99:5356,442,0 1/1:1,36:37:99:1210,99,0 1/1:0,50:50:99:1689,138,0 1/1:0,41:41:99:1398,114,0 0/1:40,33:73:99:963,0,1062 0/1:36,32:68:99:957,0,1021 1/1:0,51:51:99:1647,132,0 1/1:0,39:39:99:1298,108,0 0/0:97,0:97:99:0,253,3434 1/1:0,72:72:99:2398,187,0 1/1:0,69:69:99:2417,193,0 1/1:0,64:64:99:2174,175,0 1/1:0,31:31:90.28:1098,90,0 0/1:34,32:66:99:884,0,1064 1/1:0,35:35:99:1207,99,0 0/1:21,24:45:99:667,0,607 0/1:24,18:42:99:520,0,799 0/1:33,24:57:99:607,0,928 0/1:28,17:45:99:488,0,830 1/1:0,34:34:99:1204,99,0 1/1:0,49:49:99:1659,135,0 1/1:0,49:49:99:1709,141,0 1/1:0,82:82:99:2756,226,0 0/1:32,27:59:99:722,0,902 1/1:0,52:52:99:1718,141,0 1/1:0,50:50:99:1760,144,0 1/1:0,48:48:99:1620,132,0 1/1:0,50:50:99:1781,147,0 12 97136218 . T C 12085.55 . AC=29;AF=0.345;AN=84;BaseQRankSum=18.224;DP=1139;Dels=0.00;FS=20.054;HRun=1;HaplotypeScore=0.3850;InbreedingCoeff=0.2096;MQ=59.48;MQ0=0;MQRankSum=1.443;QD=19.28;ReadPosRankSum=-0.713 GT:AD:DP:GQ:PL 0/0:13,0:13:39.11:0,39,452 0/0:31,0:31:78.24:0,78,975 0/0:20,0:20:57.17:0,57,675 0/1:33,12:45:99:359,0,927 0/1:23,19:42:99:546,0,643 0/0:29,0:30:84.26:0,84,1041 0/1:17,28:45:99:823,0,473 0/0:39,1:40:67.09:0,67,1271 0/1:16,13:29:99:401,0,436 0/1:7,9:16:99:282,0,174 0/1:8,10:18:99:298,0,215 0/1:18,18:36:99:518,0,469 0/1:7,9:16:99:269,0,178 1/1:0,19:19:51.16:652,51,0 0/1:31,35:66:99:967,0,755 1/1:0,13:13:33.10:425,33,0 0/0:17,0:17:51.15:0,51,606 0/0:20,1:21:21.90:0,22,600 0/0:40,0:40:96.30:0,96,1214 0/0:35,0:35:96.29:0,96,1158 0/0:36,0:36:93.28:0,93,1152 0/1:14,7:21:99:201,0,397 0/0:53,0:53:99:0,141,1755 1/1:0,24:24:63.19:831,63,0 0/1:20,16:36:99:475,0,608 1/1:1,29:30:49.90:1042,50,0 0/0:11,0:11:30.07:0,30,356 0/0:23,1:24:35.76:0,36,751 0/0:16,0:16:42.13:0,42,521 0/0:21,0:21:60.18:0,60,717 0/0:22,0:22:66.20:0,66,792 0/0:29,0:29:78.24:0,78,963 0/0:19,0:19:45.13:0,45,562 1/1:0,14:14:39.11:474,39,0 1/1:0,29:29:69.22:916,69,0 1/1:0,31:31:93.30:1194,93,0 0/1:11,17:28:99:405,0,305 0/1:8,10:18:99:294,0,210 0/0:24,0:24:66.20:0,66,798 0/1:11,13:24:99:415,0,319 0/1:17,10:27:99:300,0,522 0/0:10,0:10:27.08:0,27,324 12 97136239 . G A 33866.72 . AC=69;AF=0.821;AN=84;BaseQRankSum=-13.095;DP=1348;Dels=0.00;FS=5.411;HRun=1;HaplotypeScore=0.2347;InbreedingCoeff=-0.0559;MQ=59.45;MQ0=0;MQRankSum=0.187;QD=26.44;ReadPosRankSum=0.138 GT:AD:DP:GQ:PL 1/1:1,16:17:14.71:526,15,0 1/1:0,33:33:87.27:1100,87,0 1/1:0,27:27:72.22:895,72,0 0/1:34,18:52:99:480,0,1083 1/1:0,52:52:99:1670,129,0 1/1:0,32:32:84.27:1092,84,0 1/1:0,43:43:99:1532,117,0 0/1:25,24:49:99:667,0,781 1/1:0,29:29:78.24:974,78,0 1/1:0,24:24:69.21:844,69,0 1/1:0,19:19:48.15:615,48,0 0/1:21,20:41:99:601,0,582 0/1:12,13:25:99:358,0,330 1/1:0,22:22:57.17:713,57,0 1/1:0,77:77:99:2437,193,0 1/1:0,15:15:42.13:521,42,0 1/1:0,20:20:54.17:677,54,0 1/1:0,24:24:66.20:816,66,0 0/1:23,25:48:99:692,0,656 0/1:20,21:41:99:521,0,517 1/1:0,41:41:99:1348,105,0 1/1:0,23:23:69.21:839,69,0 0/0:67,0:67:99:0,175,2419 1/1:0,29:29:78.25:1013,78,0 1/1:0,42:42:99:1480,114,0 1/1:0,39:39:99:1328,102,0 1/1:0,14:14:42.13:520,42,0 0/1:12,17:29:99:511,0,317 1/1:0,19:19:54.17:670,54,0 0/1:13,9:22:99:211,0,379 0/1:14,10:24:99:276,0,412 0/1:22,15:37:99:378,0,637 0/1:14,12:26:99:365,0,367 1/1:0,18:18:51.14:624,51,0 1/1:0,31:31:81.25:1025,81,0 1/1:0,34:34:96.31:1213,96,0 1/1:0,29:29:75.22:933,75,0 0/1:12,16:28:99:471,0,345 1/1:0,27:27:75.23:931,75,0 1/1:0,37:37:99:1265,99,0 0/1:17,11:28:99:276,0,540 1/1:0,14:14:36.11:458,36,0 12 99139559 . G T 2484.81 . AC=2;AF=0.024;AN=84;BaseQRankSum=-9.184;DP=2532;Dels=0.00;FS=6.852;HRun=2;HaplotypeScore=1.5045;InbreedingCoeff=-0.0244;MQ=59.22;MQ0=0;MQRankSum=1.009;QD=13.65;ReadPosRankSum=3.498 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,156,2001 0/0:45,0:45:99:0,117,1518 0/0:27,0:27:72.23:0,72,923 0/0:135,0:135:99:0,334,4558 0/0:92,1:93:99:0,209,3298 0/0:88,0:88:99:0,226,3078 0/0:95,0:95:99:0,241,3315 0/0:96,0:96:99:0,244,3327 0/0:45,0:45:99:0,129,1645 0/0:36,0:36:87.27:0,87,1127 0/0:38,0:38:99:0,105,1358 0/0:57,0:57:99:0,157,2006 0/0:50,0:50:99:0,120,1572 0/0:34,0:34:93.29:0,93,1183 0/0:137,0:137:99:0,349,4443 0/0:35,0:35:99:0,99,1277 0/0:47,0:47:99:0,126,1641 0/0:30,0:30:84.26:0,84,1063 0/0:86,0:86:99:0,229,2840 0/0:100,0:100:99:0,250,3173 0/0:81,0:82:99:0,193,2488 0/0:52,0:52:99:0,138,1746 0/1:53,56:109:99:1462,0,1575 0/0:79,1:80:99:0,170,2611 0/1:35,38:73:99:1085,0,1037 0/0:82,1:83:99:0,211,2892 0/0:36,0:36:93.27:0,93,1177 0/0:32,0:32:93.29:0,93,1178 0/0:32,0:32:84.26:0,84,1072 0/0:40,0:40:99:0,99,1278 0/0:49,0:49:99:0,126,1603 0/0:94,1:95:99:0,211,2761 0/0:60,0:60:99:0,147,1929 0/0:35,0:35:93.27:0,93,1161 0/0:42,0:42:99:0,114,1459 0/0:37,0:37:99:0,99,1291 0/0:70,0:70:99:0,184,2343 0/0:47,0:47:99:0,126,1587 0/0:37,0:37:99:0,99,1258 0/0:36,0:36:84.27:0,84,1089 0/0:26,0:26:75.24:0,75,949 0/0:45,0:45:99:0,120,1537 12 99837570 . C T 1484.53 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.632;DP=3669;Dels=0.00;FS=0.500;HRun=1;HaplotypeScore=1.8376;InbreedingCoeff=-0.0244;MQ=59.36;MQ0=1;MQRankSum=0.403;QD=12.80;ReadPosRankSum=-1.337 GT:AD:DP:GQ:PL 0/0:65,0:65:99:0,181,2281 0/1:30,33:63:99:935,0,933 0/1:31,22:53:99:612,0,934 0/0:133,1:134:99:0,317,4619 0/0:124,0:124:99:0,322,4278 0/0:107,0:107:99:0,271,3613 0/0:129,0:129:99:0,337,4488 0/0:113,0:113:99:0,295,3884 0/0:64,0:64:99:0,181,2252 0/0:53,1:54:99:0,132,1682 0/0:62,0:63:99:0,169,2137 0/0:72,0:72:99:0,193,2461 0/0:78,0:79:99:0,217,2703 0/0:68,0:68:99:0,190,2387 0/0:208,0:209:99:0,527,6625 0/0:55,0:55:99:0,147,1875 0/0:55,0:55:99:0,147,1851 0/0:57,0:57:99:0,166,2088 0/0:95,0:95:99:0,259,3200 0/0:156,0:156:99:0,412,5268 0/0:108,0:108:99:0,280,3543 0/0:92,0:92:99:0,241,3029 0/0:132,0:133:99:0,352,4664 0/0:117,0:117:99:0,298,3977 0/0:135,0:135:99:0,343,4542 0/0:125,0:125:99:0,316,4176 0/0:50,0:50:99:0,138,1721 0/0:85,0:85:99:0,220,2810 0/0:58,0:58:99:0,156,1948 0/0:63,0:64:99:0,168,2104 0/0:66,0:66:99:0,184,2313 0/0:135,0:135:99:0,364,4591 0/0:70,0:70:99:0,181,2314 0/0:56,0:56:99:0,163,2056 0/0:65,0:65:99:0,169,2123 0/0:86,0:86:99:0,238,2992 0/0:92,0:93:99:0,241,3006 0/0:62,0:62:99:0,172,2170 0/0:59,0:59:99:0,166,2095 0/0:63,0:63:99:0,175,2202 0/0:53,0:53:99:0,153,1903 0/0:78,0:78:99:0,217,2692 12 100451406 . A G 1573.17 . AC=1;AF=0.012;AN=84;BaseQRankSum=9.223;DP=2079;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7195;InbreedingCoeff=-0.0120;MQ=59.43;MQ0=0;MQRankSum=-0.259;QD=15.89;ReadPosRankSum=-0.151 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,117,1449 0/0:26,0:26:75.23:0,75,906 0/0:45,0:45:99:0,126,1517 0/0:85,0:85:99:0,232,2866 0/0:84,0:84:99:0,241,2973 0/0:81,0:81:99:0,229,2933 0/0:82,0:82:99:0,226,2866 0/0:77,0:77:99:0,196,2483 0/0:56,0:57:99:0,144,1796 0/0:34,0:34:87.27:0,87,1088 0/0:28,0:28:81.24:0,81,970 0/0:48,0:48:99:0,123,1534 0/0:44,0:44:99:0,114,1407 0/0:47,0:47:99:0,135,1663 0/0:129,0:129:99:0,334,4106 0/0:27,0:27:75.22:0,75,906 0/0:51,0:51:99:0,141,1717 0/0:50,0:50:99:0,138,1693 0/0:45,0:45:99:0,117,1449 0/0:39,0:39:99:0,102,1288 0/0:43,0:43:99:0,114,1431 0/0:28,0:28:78.24:0,78,953 0/1:48,51:99:99:1619,0,1381 0/0:76,0:76:99:0,199,2487 0/0:87,0:87:99:0,241,3016 0/0:70,0:70:99:0,199,2468 0/0:21,0:21:57.17:0,57,692 0/0:31,0:31:84.24:0,84,1018 0/0:26,0:26:72.22:0,72,874 0/0:34,0:34:96.29:0,96,1163 0/0:39,0:39:99:0,108,1325 0/0:32,0:32:84.27:0,84,1066 0/0:25,0:25:57.18:0,57,735 0/0:39,0:39:99:0,111,1363 0/0:38,0:38:99:0,102,1285 0/0:45,0:45:99:0,126,1516 0/0:35,0:35:96.29:0,96,1194 0/0:57,0:57:99:0,150,1841 0/0:45,0:45:99:0,129,1557 0/0:24,0:24:72.22:0,72,864 0/0:30,0:30:87.26:0,87,1045 0/0:30,0:30:81.25:0,81,999 12 100660814 . A AAC 629.15 . AC=17;AF=0.202;AN=84;BaseQRankSum=10.922;DP=3187;FS=893.269;HRun=0;HaplotypeScore=365.9671;InbreedingCoeff=-0.2621;MQ=58.79;MQ0=0;MQRankSum=0.594;QD=0.56;ReadPosRankSum=-21.059 GT:AD:DP:GQ:PL 0/0:66,0:66:43.60:0,44,1562 0/0:57,0:57:1.40:4,0,1011 0/0:48,0:48:75.23:0,75,1145 0/0:166,2:170:50.18:0,50,3582 0/0:105,1:153:99:0,153,3384 0/0:105,1:106:99:0,128,2577 0/0:95,1:95:49.70:0,50,1969 0/0:81,0:79:74.71:0,75,1846 0/0:46,0:46:67.25:0,67,965 0/0:46,0:46:22.31:0,22,1154 0/1:53,0:53:61.75:62,0,1049 0/1:55,0:55:62.24:62,0,1109 0/1:46,0:45:17.49:17,0,1015 0/0:67,0:67:70.08:0,70,1402 0/1:178,1:179:47.15:47,0,3643 0/1:55,0:56:83.36:83,0,1236 0/0:60,0:58:27.03:0,27,1319 0/1:54,0:55:31.08:31,0,1043 0/1:55,0:74:58.05:58,0,1583 0/0:91,1:92:99:0,129,1935 0/1:86,2:89:35.03:35,0,1736 0/0:82,0:83:25.97:0,26,1799 0/0:146,1:146:99:0,181,3728 0/0:66,0:64:99:0,116,1747 0/0:107,1:103:99:0,117,2629 0/0:90,0:88:99:0,111,2112 0/1:45,0:45:11.54:12,0,870 0/1:61,0:61:26.23:26,0,1141 0/0:53,0:53:18.69:0,19,1218 0/0:44,0:44:35.01:0,35,1068 0/0:47,0:47:77.15:0,77,1174 0/0:124,0:125:99:0,125,2628 0/0:84,0:84:70.62:0,71,1812 0/1:47,0:47:32.83:33,0,914 0/1:60,0:60:5.49:5,0,1186 0/0:68,0:68:8.92:0,9,1617 0/1:94,2:96:9.48:9,0,1880 0/1:62,0:62:79.53:80,0,1336 0/0:52,0:52:27.26:0,27,1134 0/1:50,0:50:96.19:96,0,1178 0/1:44,0:44:20.01:20,0,1079 0/1:60,0:60:99:118,0,1242 12 100706305 . C T 487.65 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.503;DP=2012;Dels=0.00;FS=6.009;HRun=1;HaplotypeScore=1.3845;InbreedingCoeff=-0.0120;MQ=59.13;MQ0=0;MQRankSum=3.375;QD=10.60;ReadPosRankSum=-1.226 GT:AD:DP:GQ:PL 0/0:18,0:18:54.17:0,54,667 0/0:41,0:42:99:0,120,1466 0/0:37,0:37:99:0,105,1285 0/0:93,0:93:99:0,259,3336 0/0:72,0:72:99:0,211,2711 0/0:79,0:79:99:0,232,2974 0/0:78,1:79:99:0,220,2886 0/0:71,0:71:99:0,196,2526 0/0:35,0:36:90.29:0,90,1164 0/0:32,0:33:90.27:0,90,1110 0/0:33,0:33:93.27:0,93,1149 0/0:43,0:43:99:0,129,1574 0/0:24,0:24:72.21:0,72,876 0/0:30,0:30:84.23:0,84,1009 0/0:118,0:118:99:0,319,3932 0/0:28,0:28:72.22:0,72,891 0/0:33,0:33:96.29:0,96,1182 0/0:49,0:49:99:0,138,1733 0/0:45,0:45:99:0,120,1493 0/0:62,0:62:99:0,162,2026 0/0:34,0:34:90.29:0,90,1155 0/0:42,0:42:99:0,114,1421 0/0:88,0:88:99:0,253,3329 0/0:68,1:69:99:0,162,2563 0/0:71,0:71:99:0,205,2624 0/0:64,0:64:99:0,181,2335 0/0:32,0:32:90.26:0,90,1077 0/0:37,0:37:99:0,108,1341 0/0:26,0:26:72.22:0,72,891 0/0:35,0:35:99:0,99,1231 0/0:34,0:34:99:0,99,1266 0/0:42,0:42:99:0,111,1434 0/1:26,20:46:99:534,0,842 0/0:39,0:39:99:0,108,1290 0/0:37,0:37:99:0,111,1381 0/0:53,0:53:99:0,156,1913 0/0:47,0:47:99:0,129,1616 0/0:36,0:36:99:0,105,1296 0/0:40,0:40:99:0,114,1436 0/0:45,0:45:99:0,123,1516 0/0:39,0:39:99:0,105,1310 0/0:31,0:31:90.25:0,90,1074 12 100988686 . C T 10.77 . AC=1;AF=0.012;AN=82;BaseQRankSum=-2.104;DP=330;Dels=0.00;FS=6.586;HRun=0;HaplotypeScore=0.1578;InbreedingCoeff=-0.0278;MQ=58.66;MQ0=0;MQRankSum=0.679;QD=2.15;ReadPosRankSum=0.371 GT:AD:DP:GQ:PL 0/0:8,0:8:24.08:0,24,304 0/0:5,0:5:15.05:0,15,194 0/0:10,0:10:24.08:0,24,318 0/0:5,0:5:12.04:0,12,167 0/0:6,0:6:15.05:0,15,211 0/0:7,0:7:18.06:0,18,251 ./. 0/0:8,0:8:18.06:0,18,259 0/0:8,0:8:21.07:0,21,275 0/0:14,0:14:33.10:0,33,430 0/0:8,0:8:21.07:0,21,274 0/0:6,0:6:18.06:0,18,228 0/0:6,0:6:15.05:0,15,195 0/0:8,0:8:18.06:0,18,241 0/0:23,0:23:48.16:0,48,651 0/0:5,0:5:12.04:0,12,156 0/0:8,0:8:21.05:0,21,260 0/0:5,0:5:15.05:0,15,194 0/0:15,0:15:33.11:0,33,444 0/0:12,0:12:24.07:0,24,314 0/0:8,0:8:18.06:0,18,246 0/0:10,0:10:24.08:0,24,322 0/0:6,0:6:15.05:0,15,209 0/0:13,0:13:33.11:0,33,461 0/0:1,0:1:3.01:0,3,41 0/0:4,0:4:9.03:0,9,128 0/0:6,0:6:15.05:0,15,201 0/0:12,0:12:30.10:0,30,388 0/0:4,0:4:12.04:0,12,156 0/0:5,0:5:15.05:0,15,196 0/0:6,0:6:15.05:0,15,200 0/0:8,0:8:18.06:0,18,241 0/0:12,0:12:30.10:0,30,396 0/0:9,0:9:21.07:0,21,284 0/0:6,0:6:15.05:0,15,198 0/0:4,0:4:12.04:0,12,153 0/0:22,0:22:51.16:0,51,676 0/1:3,2:5:56.34:56,0,101 0/0:5,0:5:15.05:0,15,196 0/0:5,0:5:15.05:0,15,194 0/0:4,0:4:12.04:0,12,154 0/0:8,0:8:21.07:0,21,277 12 101368641 . G C 1189.77 . AC=23;AF=0.274;AN=84;BaseQRankSum=-19.646;DP=3462;Dels=0.00;FS=1756.478;HRun=4;HaplotypeScore=1.9623;InbreedingCoeff=-0.3715;MQ=59.07;MQ0=0;MQRankSum=-0.048;QD=0.60;ReadPosRankSum=-24.435 GT:AD:DP:GQ:PL 0/0:38,14:52:52.40:0,52,1296 0/0:50,17:67:24.52:0,25,1638 0/0:55,8:63:99:0,159,1938 0/0:100,54:155:50.79:0,51,3423 0/1:60,49:109:99:186,0,1862 0/1:97,48:145:23.07:23,0,3243 0/1:71,49:121:55.52:56,0,2247 0/0:73,44:117:58.78:0,59,2500 0/0:61,19:80:99:0,101,2093 0/1:35,22:57:50.77:51,0,998 0/1:40,14:54:2.46:2,0,1314 0/1:35,19:54:47.41:47,0,1081 0/1:35,20:55:31.72:32,0,1139 0/1:40,16:56:5.83:6,0,1350 0/1:125,64:190:49.15:49,0,4058 0/1:31,18:49:99:107,0,1038 0/0:46,19:65:33.18:0,33,1489 0/1:30,21:51:99:170,0,931 0/1:63,28:93:37.57:38,0,2021 0/0:112,32:144:87.63:0,88,3856 0/0:73,33:108:35.69:0,36,2519 0/0:40,22:62:87.34:0,87,1309 0/1:98,54:152:99:138,0,3143 0/1:57,30:87:12.72:13,0,1797 0/1:84,48:132:32.38:32,0,2768 0/0:66,19:85:99:0,174,2496 0/0:29,9:38:20.27:0,20,916 0/1:47,21:68:99:105,0,1454 0/0:42,19:61:44.14:0,44,1419 0/0:47,18:65:78.51:0,79,1603 0/0:34,14:48:1.62:0,2,1025 0/1:82,45:127:35.05:35,0,2663 0/0:51,25:76:59.61:0,60,1667 0/1:34,17:52:18.26:18,0,1120 0/1:35,20:55:71.35:71,0,1108 0/0:50,22:72:55.45:0,55,1629 0/1:69,34:103:67.57:68,0,2166 0/1:38,24:62:75.28:75,0,1150 0/1:42,20:62:25.11:25,0,1289 0/0:42,10:52:99:0,123,1551 0/0:45,19:64:93.82:0,94,1535 0/1:38,16:54:16.09:16,0,1225 12 101368641 . G GC 2811.46 . AC=29;AF=0.345;AN=84;BaseQRankSum=18.139;DP=4269;FS=2545.004;HRun=4;HaplotypeScore=536.4980;InbreedingCoeff=-0.5416;MQ=56.36;MQ0=0;MQRankSum=-1.970;QD=0.91;ReadPosRankSum=-28.946 GT:AD:DP:GQ:PL 0/0:67,0:67:14.75:0,15,1013 0/1:82,0:82:19.33:19,0,1120 0/1:71,20:91:63.25:63,0,1168 0/1:191,0:191:77.27:77,0,2433 0/1:140,0:140:99:283,0,1437 0/1:168,0:165:99:102,0,2458 0/1:145,0:142:99:231,0,1636 0/0:142,0:138:14.44:0,14,1803 0/0:93,0:93:51.59:0,52,1458 0/1:65,2:68:95.92:96,0,781 0/1:73,0:73:80.42:80,0,991 0/1:71,0:71:99:108,0,895 0/0:60,0:60:30.35:0,30,730 0/1:82,0:82:47.43:47,0,984 0/1:222,0:222:99:150,0,2655 0/1:62,0:62:76.34:76,0,704 0/0:73,0:73:17.60:0,18,823 0/1:64,0:64:99:169,0,637 0/1:120,0:120:70.78:71,0,1363 0/0:170,0:170:49.90:0,50,2665 0/1:135,0:135:13.81:14,0,1775 0/0:76,0:76:5.66:0,6,1032 0/1:195,0:195:99:315,0,2306 0/1:102,0:97:66.87:67,0,1220 0/1:141,0:136:99:100,0,1657 0/1:89,41:124:99:282,0,1595 0/0:53,0:53:16.33:0,16,764 0/1:83,0:83:99:130,0,1063 0/1:73,0:73:13.01:13,0,1081 0/0:75,0:75:17.41:0,17,1044 0/0:60,0:60:28.35:0,28,880 0/0:150,0:150:3.06:0,3,1887 0/1:87,0:87:37.15:37,0,1178 0/1:68,0:68:25.68:26,0,842 0/1:70,0:70:99:103,0,746 0/1:87,0:87:12.04:12,0,1141 0/1:124,0:123:99:108,0,1418 0/1:78,0:78:98.72:99,0,814 0/1:75,0:75:37.56:38,0,946 0/0:71,0:71:93.21:0,93,1041 0/0:79,0:79:68.24:0,68,1057 0/1:73,0:73:83.26:83,0,922 12 101561940 . A T 631.65 . AC=3;AF=0.036;AN=84;BaseQRankSum=6.667;DP=1098;Dels=0.00;FS=1.724;HRun=1;HaplotypeScore=1.0734;InbreedingCoeff=-0.0372;MQ=59.19;MQ0=0;MQRankSum=1.449;QD=12.39;ReadPosRankSum=0.935 GT:AD:DP:GQ:PL 0/0:25,0:25:66.18:0,66,772 0/0:31,0:31:69.21:0,69,868 0/0:22,0:22:57.16:0,57,680 0/1:4,7:11:99:223,0,105 0/1:10,8:18:99:225,0,260 0/0:19,0:19:48.15:0,48,597 0/0:11,0:11:27.08:0,27,340 0/0:17,0:17:45.14:0,45,552 0/0:24,0:24:63.15:0,63,728 0/0:26,0:26:72.22:0,72,859 0/1:12,10:22:99:259,0,294 0/0:31,0:31:78.23:0,78,931 0/0:23,0:23:66.20:0,66,785 0/0:27,0:27:63.19:0,63,782 0/0:92,0:92:99:0,223,2718 0/0:17,0:17:45.13:0,45,539 0/0:18,0:18:48.15:0,48,586 0/0:24,0:24:66.19:0,66,775 0/0:43,0:44:99:0,108,1308 0/0:44,0:45:99:0,105,1305 0/0:45,0:45:99:0,108,1316 0/0:32,0:32:75.23:0,75,935 0/0:17,0:17:45.14:0,45,550 0/0:10,0:10:24.07:0,24,301 0/0:9,0:9:24.06:0,24,279 0/0:16,0:16:42.12:0,42,501 0/0:23,0:23:63.18:0,63,737 0/0:33,0:33:84.26:0,84,1038 0/0:17,0:17:45.13:0,45,540 0/0:23,0:23:63.16:0,63,739 0/0:20,0:20:57.17:0,57,673 0/0:32,0:32:81.25:0,81,1010 0/0:22,0:23:63.17:0,63,732 0/0:24,0:24:72.20:0,72,835 0/0:31,0:31:87.26:0,87,1042 0/0:23,0:23:66.19:0,66,780 0/0:51,0:51:99:0,123,1517 0/0:22,0:22:63.18:0,63,735 0/0:25,0:25:69.20:0,69,814 0/0:38,0:38:99:0,99,1196 0/0:14,0:14:39.11:0,39,456 0/0:21,0:23:54.16:0,54,653 12 101577955 . G A 764.41 . 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C T 16665.13 . 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T C 276787.54 . 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C T 1466.52 . 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C T 5439.28 . 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C T 170.40 . 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C T 2386.39 . 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G T 707.91 . 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G A 3557.17 . 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C T 50761.01 . 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T C 1644.74 . 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CAGATGTTCG C 1107.18 . 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G C 6981.73 . 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A C 1706.45 . 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A G 1128.57 . 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C T 39858.66 . 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T C 22443.58 . 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C T 35358.74 . 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C G 8287.41 . 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C T 13406.33 . 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A G 77.38 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.237;DP=524;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2233;InbreedingCoeff=-0.0155;MQ=59.48;MQ0=0;MQRankSum=0.975;QD=9.67;ReadPosRankSum=0.929 GT:AD:DP:GQ:PL 0/0:14,0:14:42.12:0,42,496 0/0:7,0:7:18.05:0,18,212 0/0:5,0:5:15.05:0,15,184 0/0:11,0:11:33.10:0,33,398 0/0:14,0:14:42.13:0,42,521 0/0:8,0:8:24.08:0,24,302 0/0:11,0:11:33.09:0,33,394 0/0:7,0:7:21.07:0,21,259 0/0:10,0:10:24.08:0,24,299 0/0:15,0:15:42.13:0,42,511 0/0:6,0:6:18.06:0,18,219 0/0:19,0:19:54.17:0,54,667 0/0:9,0:9:27.08:0,27,323 0/0:9,0:9:27.08:0,27,316 0/0:39,0:39:99:0,111,1311 0/0:16,0:16:48.15:0,48,579 0/0:17,0:17:51.15:0,51,616 0/0:9,0:9:27.08:0,27,328 0/0:14,0:14:42.13:0,42,515 0/0:16,0:16:45.13:0,45,544 0/0:16,0:16:48.15:0,48,596 0/0:15,0:15:39.12:0,39,482 0/0:3,0:3:9.03:0,9,113 0/0:9,0:9:27.09:0,27,345 0/1:2,6:8:61.27:124,0,61 0/0:4,0:4:12.04:0,12,151 0/0:10,0:10:30.09:0,30,362 0/0:12,0:12:36.11:0,36,439 0/0:10,0:10:30.09:0,30,363 0/0:6,0:6:18.05:0,18,216 0/0:14,0:14:42.13:0,42,515 0/0:10,0:10:30.09:0,30,368 0/0:16,0:16:45.14:0,45,557 0/0:12,0:12:36.11:0,36,442 0/0:8,0:8:24.07:0,24,286 0/0:18,0:18:54.16:0,54,645 0/0:25,0:25:69.19:0,69,825 0/0:8,0:8:24.08:0,24,295 0/0:19,1:20:29.59:0,30,663 0/0:14,0:14:39.12:0,39,478 0/0:10,0:10:27.08:0,27,338 0/0:19,1:20:35.49:0,35,674 12 104332224 . C T 789.78 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.540;DP=1660;Dels=0.00;FS=9.880;HRun=0;HaplotypeScore=0.3375;InbreedingCoeff=-0.0244;MQ=59.42;MQ0=0;MQRankSum=-0.051;QD=12.34;ReadPosRankSum=-0.422 GT:AD:DP:GQ:PL 0/0:28,0:28:84.26:0,84,1058 0/0:43,0:43:99:0,117,1515 0/0:36,0:36:99:0,105,1299 0/0:52,0:52:99:0,147,1971 0/0:38,0:38:99:0,114,1493 0/0:47,0:47:99:0,141,1858 0/0:34,0:34:99:0,99,1303 0/0:45,0:45:99:0,135,1781 0/0:36,0:36:99:0,105,1309 0/0:34,0:34:96.30:0,96,1199 0/0:27,0:27:78.24:0,78,976 0/0:40,0:40:99:0,114,1439 0/0:33,0:33:96.29:0,96,1205 0/0:36,0:36:99:0,108,1358 0/0:102,0:102:99:0,286,3606 0/0:41,0:41:99:0,123,1544 0/0:36,0:36:99:0,102,1294 0/0:34,0:34:99:0,99,1204 0/0:44,0:45:99:0,126,1564 0/0:51,0:51:99:0,141,1790 0/0:42,0:42:99:0,108,1392 0/0:25,0:25:72.23:0,72,903 0/0:53,0:53:99:0,160,2110 0/1:17,15:32:99:482,0,573 0/0:38,0:38:99:0,114,1522 0/1:20,12:32:99:370,0,682 0/0:21,0:21:63.18:0,63,761 0/0:33,0:33:99:0,99,1255 0/0:38,0:39:99:0,108,1359 0/0:35,0:36:99:0,102,1297 0/0:37,0:37:99:0,108,1382 0/0:54,0:54:99:0,156,1980 0/0:46,0:46:99:0,138,1706 0/0:35,0:35:99:0,99,1237 0/0:36,0:36:99:0,102,1275 0/0:35,1:36:79.64:0,80,1242 0/0:40,0:40:99:0,117,1447 0/0:35,0:35:99:0,105,1281 0/0:49,0:49:99:0,138,1738 0/0:31,0:31:90.28:0,90,1112 0/0:29,0:29:84.25:0,84,1024 0/0:43,0:43:99:0,126,1601 12 104522206 . A G 1740.86 . 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C G 32.99 . 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C T 32787.56 . AC=34;AF=0.405;AN=84;BaseQRankSum=-12.905;DP=2702;Dels=0.00;FS=14.418;HRun=1;HaplotypeScore=1.2500;InbreedingCoeff=-0.0871;MQ=59.33;MQ0=0;MQRankSum=1.220;QD=18.82;ReadPosRankSum=0.897 GT:AD:DP:GQ:PL 0/1:25,35:60:99:1006,0,664 0/1:25,32:57:99:957,0,669 0/1:29,32:61:99:877,0,726 0/0:62,0:62:99:0,169,2242 0/0:59,0:59:99:0,166,2238 0/0:67,0:67:99:0,172,2327 0/1:24,17:41:99:490,0,810 0/0:50,0:50:99:0,147,1905 0/1:29,35:64:99:998,0,825 0/1:22,16:38:99:438,0,604 0/1:21,32:53:99:903,0,625 1/1:0,51:51:99:1806,150,0 0/1:29,30:59:99:902,0,787 0/1:33,25:58:99:724,0,958 1/1:0,202:202:99:6461,527,0 1/1:0,50:50:99:1726,141,0 0/1:29,30:59:99:827,0,792 0/1:18,30:48:99:938,0,494 0/1:54,47:101:99:1338,0,1529 0/0:101,0:101:99:0,283,3511 0/1:38,53:91:99:1532,0,995 0/1:42,28:70:99:742,0,1218 0/0:69,1:70:99:0,166,2581 0/0:45,1:46:94.63:0,95,1669 0/1:20,27:47:99:788,0,578 0/1:25,16:41:99:412,0,772 1/1:0,28:28:84.26:1021,84,0 0/1:33,17:50:99:440,0,954 1/1:0,52:52:99:1806,147,0 0/0:58,0:58:99:0,162,1938 0/0:52,0:52:99:0,135,1696 0/1:51,35:86:99:897,0,1524 0/0:65,0:65:99:0,175,2135 0/1:27,28:55:99:820,0,745 1/1:0,61:61:99:1984,159,0 0/0:78,0:78:99:0,220,2731 0/0:124,1:125:99:0,331,4037 0/0:63,0:63:99:0,178,2168 0/1:29,16:45:99:454,0,879 0/0:64,0:64:99:0,178,2131 0/1:34,34:68:99:906,0,1001 0/1:25,21:46:99:595,0,705 12 105199038 . G A 47252.14 . AC=15;AF=0.179;AN=84;BaseQRankSum=-36.352;DP=8826;DS;Dels=0.00;FS=12.051;HRun=0;HaplotypeScore=4.4513;InbreedingCoeff=0.1072;MQ=59.48;MQ0=0;MQRankSum=1.291;QD=17.04;ReadPosRankSum=-1.788 GT:AD:DP:GQ:PL 0/0:203,0:203:99:0,563,7112 0/1:99,88:187:99:2484,0,3105 1/1:0,178:178:99:6201,515,0 0/0:221,0:222:99:0,620,8256 0/0:204,0:204:99:0,590,7887 0/0:220,0:220:99:0,638,8495 0/0:213,0:213:99:0,593,7921 0/0:181,0:181:99:0,515,6909 0/0:202,0:202:99:0,575,7326 0/0:204,0:204:99:0,593,7467 0/0:215,0:215:99:0,599,7623 0/0:210,0:210:99:0,587,7472 0/0:209,1:210:99:0,558,7306 0/0:213,0:214:99:0,602,7664 1/1:0,250:250:99:8780,731,0 0/1:97,68:165:99:1895,0,2822 0/1:102,112:214:99:3311,0,3112 0/1:99,99:198:99:2907,0,2987 0/1:129,110:239:99:3036,0,3872 0/1:119,123:243:99:3564,0,3583 0/1:130,104:234:99:2938,0,4051 0/0:222,0:222:99:0,620,7837 0/0:247,0:247:99:0,701,9484 0/0:197,0:197:99:0,551,7424 0/0:229,0:229:99:0,647,8666 0/0:222,0:222:99:0,623,8354 0/1:87,85:172:99:2489,0,2694 0/1:105,111:216:99:3261,0,3046 0/0:185,0:185:99:0,527,6685 0/0:214,0:214:99:0,590,7480 0/0:185,0:185:99:0,548,6963 0/1:133,117:250:99:3248,0,3953 0/0:235,0:236:99:0,668,8496 0/0:189,0:189:99:0,542,6828 0/0:182,2:184:99:0,491,6560 0/0:183,0:184:99:0,521,6611 0/0:227,0:227:99:0,653,8259 0/0:230,0:230:99:0,632,7961 0/1:115,112:227:99:3140,0,3581 0/0:213,0:213:99:0,596,7568 0/0:186,0:187:99:0,518,6566 0/0:203,0:204:99:0,569,7213 12 105282893 . T C 8119.75 . AC=6;AF=0.071;AN=84;BaseQRankSum=-0.400;DP=2890;DS;Dels=0.00;FS=3.964;HRun=1;HaplotypeScore=1.4229;InbreedingCoeff=-0.0769;MQ=59.56;MQ0=0;MQRankSum=1.253;QD=14.82;ReadPosRankSum=0.171 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,144,1736 0/0:58,0:59:99:0,165,1977 0/0:51,0:51:99:0,150,1830 0/1:54,54:109:99:1601,0,1623 0/1:56,38:95:99:1151,0,1666 0/1:60,69:129:99:2060,0,1603 0/1:49,66:115:99:1905,0,1383 0/0:96,0:96:99:0,286,3553 0/1:24,23:47:99:520,0,710 0/0:51,0:52:99:0,135,1651 0/1:20,33:53:99:883,0,493 0/0:45,0:45:99:0,126,1530 0/0:48,0:49:99:0,141,1724 0/0:38,0:38:99:0,111,1327 0/0:186,0:190:99:0,542,6542 0/0:45,0:46:99:0,123,1472 0/0:55,0:56:99:0,147,1789 0/0:61,0:62:99:0,168,2020 0/0:81,0:81:99:0,232,2847 0/0:86,0:89:99:0,244,2925 0/0:63,0:63:99:0,187,2274 0/0:46,0:46:99:0,129,1517 0/0:125,0:125:99:0,370,4529 0/0:86,0:86:99:0,226,2851 0/0:101,0:101:99:0,292,3601 0/0:79,1:80:99:0,211,2899 0/0:46,0:46:99:0,132,1598 0/0:69,0:69:99:0,196,2431 0/0:35,0:36:99:0,102,1248 0/0:38,0:38:99:0,105,1258 0/0:43,0:43:99:0,126,1498 0/0:70,0:71:99:0,196,2367 0/0:53,0:54:99:0,156,1815 0/0:59,0:59:99:0,172,2086 0/0:57,0:59:99:0,162,1966 0/0:60,0:60:99:0,178,2151 0/0:43,0:44:99:0,123,1500 0/0:67,0:67:99:0,196,2412 0/0:49,0:49:99:0,141,1667 0/0:55,0:56:99:0,162,1968 0/0:66,0:66:99:0,190,2275 0/0:56,0:56:99:0,165,1994 12 105380143 . G A 48.11 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.653;DP=553;Dels=0.00;FS=2.188;HRun=0;HaplotypeScore=0.4953;InbreedingCoeff=-0.0161;MQ=58.84;MQ0=0;MQRankSum=1.429;QD=6.01;ReadPosRankSum=-1.295 GT:AD:DP:GQ:PL 0/0:8,0:8:21.06:0,21,261 0/0:9,0:9:24.07:0,24,303 0/1:3,5:8:87.53:94,0,88 0/0:23,0:23:63.19:0,63,829 0/0:17,0:17:48.16:0,48,647 0/0:9,0:9:24.08:0,24,312 0/0:13,0:13:39.12:0,39,510 0/0:17,0:17:48.15:0,48,620 0/0:14,0:14:33.10:0,33,417 0/0:12,0:12:33.10:0,33,419 0/0:11,0:11:27.08:0,27,346 0/0:12,0:12:33.11:0,33,428 0/0:6,0:6:15.04:0,15,181 0/0:20,0:20:57.16:0,57,692 0/0:36,0:36:90.28:0,90,1154 0/0:18,0:18:54.14:0,54,651 0/0:11,0:11:33.09:0,33,390 0/0:11,0:12:27.09:0,27,352 0/0:21,0:21:60.17:0,60,732 0/0:16,0:16:45.09:0,45,527 0/0:14,0:14:33.10:0,33,399 0/0:14,0:14:42.13:0,42,523 0/0:16,0:16:42.13:0,42,538 0/0:20,0:20:51.14:0,51,670 0/0:17,0:17:48.16:0,48,639 0/0:10,0:10:24.08:0,24,320 0/0:2,0:2:6.02:0,6,69 0/0:9,0:9:24.07:0,24,296 0/0:8,0:8:21.04:0,21,245 0/0:8,0:8:24.08:0,24,306 0/0:6,0:6:15.04:0,15,189 0/0:16,0:16:42.13:0,42,541 0/0:19,0:19:48.15:0,48,627 0/0:12,0:12:33.10:0,33,410 0/0:8,0:8:24.07:0,24,283 0/0:8,0:8:21.07:0,21,273 0/0:24,0:24:48.16:0,48,652 0/0:9,0:9:24.08:0,24,298 0/0:8,0:8:21.07:0,21,264 0/0:11,0:11:27.07:0,27,331 0/0:9,0:9:24.06:0,24,282 0/0:12,0:12:36.11:0,36,442 12 105380152 . A C 5297.79 . AC=26;AF=0.310;AN=84;BaseQRankSum=10.912;DP=578;Dels=0.00;FS=1.547;HRun=3;HaplotypeScore=0.5000;InbreedingCoeff=-0.0135;MQ=58.91;MQ0=0;MQRankSum=-1.152;QD=16.20;ReadPosRankSum=-0.033 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,277 0/1:5,3:8:90.26:90,0,136 1/1:0,6:6:18.06:222,18,0 1/1:0,24:24:63.20:833,63,0 1/1:0,17:17:48.16:639,48,0 0/1:6,5:11:99:160,0,163 0/1:10,3:13:77.85:78,0,323 0/0:15,0:15:45.14:0,45,553 0/1:5,8:13:99:190,0,123 0/0:12,0:13:30.09:0,30,379 0/1:3,9:12:68.82:253,0,69 0/0:14,0:14:36.11:0,36,441 0/0:7,0:7:18.04:0,18,213 0/0:23,0:23:63.18:0,63,757 0/1:24,14:38:99:398,0,575 0/1:12,8:20:99:208,0,316 0/1:9,4:13:99:101,0,281 0/1:7,7:14:99:163,0,188 0/1:13,11:24:99:312,0,359 0/1:10,5:15:99:151,0,276 0/1:10,4:14:99:110,0,272 0/0:14,0:14:36.11:0,36,458 0/1:13,9:22:99:189,0,316 0/0:20,0:20:51.13:0,51,645 0/0:16,0:16:42.13:0,42,532 0/0:14,0:14:36.11:0,36,449 0/0:2,0:2:6.02:0,6,69 1/1:0,11:11:30.10:387,30,0 0/0:8,0:8:24.07:0,24,288 0/0:8,0:8:24.07:0,24,289 0/0:6,0:6:18.06:0,18,219 0/1:10,5:15:99:148,0,297 0/0:19,0:19:48.12:0,48,575 0/1:4,6:10:99:189,0,115 0/0:7,0:7:15.05:0,15,202 0/1:5,5:10:99:162,0,129 0/0:25,0:25:54.17:0,54,710 0/0:10,0:10:27.08:0,27,310 0/1:3,5:8:85.10:163,0,85 0/0:12,0:12:30.08:0,30,360 0/1:4,5:9:99:150,0,109 0/0:10,0:10:30.06:0,30,348 12 105380160 . C A 157.84 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.140;DP=560;Dels=0.00;FS=3.267;HRun=0;HaplotypeScore=0.3382;InbreedingCoeff=-0.0191;MQ=58.91;MQ0=0;MQRankSum=-0.932;QD=14.35;ReadPosRankSum=-0.772 GT:AD:DP:GQ:PL 0/0:6,0:6:18.05:0,18,218 0/0:6,0:6:15.04:0,15,183 0/0:6,0:6:12.04:0,12,147 0/0:23,0:23:63.20:0,63,817 0/0:20,0:20:48.14:0,48,620 0/0:10,0:10:24.08:0,24,313 0/0:13,0:13:33.09:0,33,412 0/0:19,0:19:48.13:0,48,621 0/0:13,0:13:36.09:0,36,415 0/0:12,0:12:27.06:0,27,334 0/0:12,0:12:33.09:0,33,408 0/0:15,0:15:42.13:0,42,522 0/0:5,0:5:12.04:0,12,146 0/0:18,0:18:51.13:0,51,609 0/0:38,0:38:96.28:0,96,1204 0/0:17,0:17:39.07:0,39,469 0/0:12,0:12:33.09:0,33,402 0/0:12,0:12:33.08:0,33,384 0/0:21,0:21:51.15:0,51,621 0/0:15,0:15:42.12:0,42,530 0/0:13,0:13:33.09:0,33,388 0/0:14,0:14:36.11:0,36,447 0/0:25,0:25:54.17:0,54,689 0/0:17,0:17:45.11:0,45,577 0/0:20,0:20:45.14:0,45,587 0/0:16,0:16:36.12:0,36,471 0/0:1,0:1:3.01:0,3,37 0/0:11,0:11:27.09:0,27,353 0/0:7,0:7:21.04:0,21,238 0/0:8,0:8:21.06:0,21,259 0/0:6,0:6:15.04:0,15,184 0/0:17,0:17:39.12:0,39,501 0/0:18,0:18:45.14:0,45,567 0/0:11,0:11:33.10:0,33,409 0/0:8,0:8:18.06:0,18,240 0/0:7,0:8:21.05:0,21,254 0/0:18,0:18:45.13:0,45,561 0/0:9,0:9:24.05:0,24,280 0/0:10,0:10:30.09:0,30,360 0/0:11,0:11:30.07:0,30,343 0/0:8,0:8:24.06:0,24,287 0/1:4,7:11:99:204,0,103 12 105380185 . G C 578.50 . AC=5;AF=0.060;AN=84;BaseQRankSum=-1.625;DP=568;Dels=0.00;FS=5.146;HRun=0;HaplotypeScore=0.7213;InbreedingCoeff=-0.0654;MQ=58.89;MQ0=0;MQRankSum=1.619;QD=10.52;ReadPosRankSum=-1.425 GT:AD:DP:GQ:PL 0/0:12,0:12:33.10:0,33,403 0/1:4,3:7:93.07:93,0,123 0/1:6,4:10:98.87:99,0,142 0/0:28,0:28:75.21:0,75,965 0/0:18,0:18:48.14:0,48,607 0/0:10,0:10:30.08:0,30,379 0/0:13,0:13:39.12:0,39,509 0/0:20,0:20:54.15:0,54,701 0/0:12,0:12:30.10:0,30,384 0/0:8,0:8:24.06:0,24,279 0/0:12,0:12:36.10:0,36,439 0/0:12,0:12:33.10:0,33,408 0/0:5,0:5:15.05:0,15,187 0/0:15,0:15:39.12:0,39,486 0/0:34,0:35:84.26:0,84,1067 0/0:17,0:17:45.14:0,45,584 0/0:11,0:11:30.09:0,30,379 0/0:12,0:12:33.10:0,33,405 0/0:22,0:22:57.16:0,57,685 0/1:7,10:17:99:263,0,226 0/0:19,0:19:54.16:0,54,657 0/0:14,0:14:33.10:0,33,414 0/0:22,0:22:54.17:0,54,722 0/0:16,0:16:45.15:0,45,591 0/0:22,0:22:54.17:0,54,712 0/0:17,0:17:39.12:0,39,511 0/1:2,2:4:61.79:66,0,62 0/1:11,6:17:99:154,0,299 0/0:4,0:4:12.04:0,12,151 0/0:9,0:9:24.07:0,24,294 0/0:6,0:6:18.05:0,18,214 0/0:15,0:15:39.10:0,39,483 0/0:23,0:23:60.17:0,60,757 0/0:9,0:9:24.07:0,24,286 0/0:9,0:9:27.09:0,27,345 0/0:6,0:6:18.06:0,18,237 0/0:13,0:13:33.10:0,33,408 0/0:7,0:7:21.06:0,21,254 0/0:11,0:11:33.10:0,33,401 0/0:13,0:13:39.12:0,39,491 0/0:7,0:7:21.07:0,21,265 0/0:9,0:9:27.08:0,27,329 12 105388357 . C T 173.30 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.945;DP=1182;Dels=0.00;FS=7.810;HRun=0;HaplotypeScore=0.2814;InbreedingCoeff=-0.0120;MQ=59.34;MQ0=0;MQRankSum=1.197;QD=8.25;ReadPosRankSum=-0.419 GT:AD:DP:GQ:PL 0/0:18,0:18:54.14:0,54,625 0/0:20,0:20:57.14:0,57,643 0/0:23,0:23:69.20:0,69,799 0/0:38,0:38:99:0,114,1438 0/0:32,0:32:96.28:0,96,1186 0/0:38,0:38:99:0,111,1406 0/0:29,0:29:87.27:0,87,1100 0/0:34,0:34:99:0,102,1291 0/0:22,0:22:66.18:0,66,762 0/0:23,0:23:69.20:0,69,803 0/0:22,0:22:63.19:0,63,747 0/0:21,0:21:60.16:0,60,714 0/0:18,0:18:54.15:0,54,622 0/1:13,8:21:99:220,0,388 0/0:89,0:89:99:0,256,2949 0/0:20,0:20:57.14:0,57,663 0/0:20,0:20:60.17:0,60,699 0/0:24,0:24:69.19:0,69,785 0/0:34,0:34:99:0,99,1147 0/0:40,0:40:99:0,111,1335 0/0:43,0:44:99:0,123,1462 0/0:24,0:24:72.20:0,72,828 0/0:30,1:31:58.03:0,58,1121 0/0:28,0:28:84.27:0,84,1090 0/0:34,0:35:99:0,102,1325 0/0:34,0:34:99:0,99,1239 0/0:17,0:17:51.12:0,51,566 0/0:23,0:23:69.20:0,69,798 0/0:21,0:21:60.17:0,60,702 0/0:15,0:15:45.13:0,45,520 0/0:26,0:26:75.20:0,75,845 0/0:32,0:32:96.29:0,96,1139 0/0:21,0:21:57.17:0,57,670 0/0:23,0:23:69.18:0,69,800 0/0:16,0:16:48.14:0,48,559 0/0:27,0:27:72.20:0,72,857 0/0:38,0:38:99:0,111,1293 0/0:25,0:25:75.21:0,75,862 0/0:20,0:20:60.17:0,60,698 0/0:36,0:36:99:0,108,1254 0/0:27,0:27:81.23:0,81,949 0/0:33,0:33:99:0,99,1164 12 105521009 . C A 6502.09 . 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C T 499.03 . 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G T 171.73 . 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C T 1825.42 . 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C G 632.97 . 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A G 525.14 . 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A G 48195.18 . AC=47;AF=0.560;AN=84;BaseQRankSum=-0.574;DP=3151;Dels=0.00;FS=2.745;HRun=0;HaplotypeScore=1.4308;InbreedingCoeff=-0.0144;MQ=59.44;MQ0=0;MQRankSum=1.473;QD=18.00;ReadPosRankSum=-1.712 GT:AD:DP:GQ:PL 0/1:28,23:55:99:621,0,695 0/0:59,0:59:99:0,138,1743 0/0:65,1:66:99:0,135,1971 0/1:65,91:156:99:2298,0,1539 0/1:59,53:112:99:1484,0,1574 0/1:70,64:134:99:1650,0,1904 1/1:0,103:103:99:3223,250,0 0/1:51,60:111:99:1621,0,1255 0/0:54,0:55:99:0,132,1629 0/1:28,29:58:99:679,0,747 0/1:27,24:52:99:668,0,663 0/1:26,21:48:99:594,0,691 1/1:0,51:51:99:1536,132,0 0/0:61,0:61:99:0,150,1847 0/1:110,128:246:99:3010,0,2645 0/1:27,26:54:99:679,0,726 0/1:28,31:59:99:791,0,767 0/1:26,26:53:99:586,0,675 1/1:0,76:76:99:2171,189,0 1/1:0,77:77:99:2258,186,0 1/1:0,67:68:99:1725,144,0 1/1:0,42:42:99:1189,99,0 0/1:62,74:136:99:2026,0,1559 1/1:0,94:94:99:2937,226,0 0/1:53,53:106:99:1359,0,1329 0/1:48,50:98:99:1271,0,1340 1/1:0,48:48:99:1406,117,0 0/1:25,31:56:99:753,0,593 1/1:0,52:52:99:1623,135,0 0/1:25,25:50:99:635,0,629 0/0:60,0:61:99:0,153,1869 1/1:0,81:81:99:2320,193,0 1/1:0,56:56:99:1636,132,0 0/0:56,0:57:99:0,144,1744 0/0:55,2:57:99:0,106,1708 0/0:55,0:58:99:0,138,1693 0/1:38,25:64:99:466,0,1001 0/1:33,18:51:99:342,0,832 1/1:1,49:50:99:1438,111,0 1/1:0,57:57:99:1681,144,0 0/1:29,30:59:99:717,0,803 0/1:31,32:64:99:805,0,875 12 108012046 . CTTGTGCG C 254.51 . AC=4;AF=0.048;AN=84;BaseQRankSum=-4.589;DP=1048;FS=260.581;HRun=0;HaplotypeScore=154.8332;InbreedingCoeff=-0.0575;MQ=57.88;MQ0=0;MQRankSum=0.732;QD=1.69;ReadPosRankSum=-12.480 GT:AD:DP:GQ:PL 0/0:21,0:21:63.22:0,63,2391 0/0:20,0:20:30.19:0,30,2090 0/0:13,0:13:39.12:0,39,1361 0/1:54,0:54:37.34:37,0,4830 0/0:62,0:62:99:0,155,6636 0/0:45,0:45:11.33:0,11,3746 0/0:34,0:33:37.31:0,37,2905 0/0:28,0:26:61.16:0,61,2651 0/0:16,0:16:11.17:0,11,1514 0/0:10,0:10:29.77:0,30,1012 0/0:20,0:20:60.20:0,60,2241 0/0:11,0:11:3.51:0,4,1149 0/0:13,0:13:39.12:0,39,1351 0/0:12,1:13:10.12:0,10,1238 0/0:47,0:47:45.88:0,46,4497 0/0:20,0:20:57.19:0,57,2206 0/0:17,0:17:48.16:0,48,1743 0/0:22,0:22:66.23:0,66,2458 0/0:27,0:27:78.26:0,78,2803 0/1:40,7:47:99:114,0,3532 0/0:28,0:28:53.28:0,53,2970 0/1:28,0:28:13.72:14,0,2454 0/0:53,0:53:11.53:0,12,4808 0/0:35,0:34:67.35:0,67,3532 0/0:46,0:43:99:0,101,4623 0/0:37,0:35:78.35:0,78,3621 0/0:15,0:15:39.13:0,39,1447 0/0:17,0:17:48.16:0,48,1825 0/0:14,0:14:39.13:0,39,1477 0/0:19,0:19:28.34:0,28,1884 0/0:12,0:11:33.11:0,33,1156 0/0:17,0:17:48.16:0,48,1831 0/0:26,0:26:47.11:0,47,2431 0/0:11,0:11:33.11:0,33,1220 0/1:14,8:22:99:183,0,1310 0/0:14,0:16:42.07:0,42,1619 0/0:20,0:20:36.20:0,36,2032 0/0:20,0:20:60.20:0,60,2101 0/0:17,0:17:48.16:0,48,1752 0/0:18,0:18:26.30:0,26,1723 0/0:15,0:15:45.15:0,45,1766 0/0:22,0:22:54.18:0,54,2126 12 108012053 . G C 4812.25 . AC=36;AF=0.429;AN=84;BaseQRankSum=-5.853;DP=1326;Dels=0.01;FS=1348.571;HRun=2;HaplotypeScore=5.0330;InbreedingCoeff=-0.7531;MQ=58.35;MQ0=0;MQRankSum=-0.776;QD=4.07;ReadPosRankSum=-16.538 GT:AD:DP:GQ:PL 0/0:18,6:24:5.80:0,6,529 0/1:16,10:26:14.84:15,0,439 0/1:11,5:16:90.74:91,0,282 0/1:41,37:79:99:417,0,1080 0/1:50,31:82:99:323,0,1463 0/1:25,24:49:99:300,0,637 0/1:20,15:35:99:166,0,475 0/1:21,16:37:99:128,0,615 0/1:12,5:17:35.69:36,0,310 0/1:8,9:17:99:177,0,162 0/1:17,9:26:47.98:48,0,421 0/1:8,4:12:9.90:10,0,197 0/1:12,9:21:99:105,0,319 0/1:8,9:17:99:120,0,185 0/1:34,35:69:99:328,0,803 0/1:19,10:29:64.33:64,0,482 0/0:11,3:15:33.08:0,33,354 0/1:17,6:24:61.10:61,0,379 0/1:24,14:39:99:180,0,576 0/0:28,14:42:16.70:0,17,696 0/1:22,8:30:9.31:9,0,646 0/1:18,17:35:99:194,0,416 0/1:40,39:79:99:517,0,1066 0/1:24,21:45:99:261,0,688 0/1:34,20:54:64.18:64,0,848 0/1:25,22:47:99:199,0,665 0/1:13,5:18:92.12:92,0,273 0/1:14,10:24:99:142,0,373 0/0:12,4:16:6.60:0,7,371 0/1:18,7:25:31.73:32,0,449 0/1:10,5:15:33.73:34,0,258 0/1:17,9:26:36.47:36,0,422 0/1:20,9:29:10.04:10,0,522 0/0:13,6:19:36.07:0,36,379 0/0:11,3:14:33.08:0,33,351 0/1:13,9:23:41.68:42,0,327 0/1:17,8:25:59.63:60,0,476 0/1:13,5:18:77.97:78,0,291 0/1:13,6:19:86.49:86,0,343 0/1:15,10:25:99:217,0,382 0/1:14,10:24:99:145,0,338 0/1:17,7:24:26.47:26,0,507 12 108012066 . G A 1293.85 . AC=4;AF=0.048;AN=84;BaseQRankSum=-7.865;DP=1613;Dels=0.00;FS=3.378;HRun=1;HaplotypeScore=1.3086;InbreedingCoeff=-0.0500;MQ=57.44;MQ0=0;MQRankSum=-0.072;QD=14.06;ReadPosRankSum=-0.573 GT:AD:DP:GQ:PL 0/0:30,0:30:84.26:0,84,1043 0/0:33,0:33:87.26:0,87,1081 0/0:19,0:19:54.17:0,54,688 0/0:89,0:89:99:0,250,3284 0/0:89,0:90:99:0,253,3339 0/0:52,0:52:99:0,144,1870 0/0:36,0:36:99:0,102,1348 0/0:40,0:40:99:0,114,1492 0/0:21,0:21:63.17:0,63,752 0/0:19,0:19:51.16:0,51,648 0/0:31,0:31:90.26:0,90,1118 0/0:16,0:16:42.12:0,42,515 0/0:28,0:28:81.26:0,81,1038 0/0:28,0:28:75.22:0,75,920 0/0:91,0:91:99:0,241,3047 0/0:29,0:29:81.26:0,81,1026 0/0:19,0:19:51.16:0,51,644 0/0:29,0:30:81.25:0,81,1004 0/0:42,0:42:99:0,120,1514 0/0:56,0:56:99:0,150,1897 0/0:51,0:51:99:0,129,1608 0/0:37,0:37:99:0,108,1365 0/0:98,1:99:99:0,265,3493 0/0:46,0:46:99:0,129,1712 0/0:65,0:65:99:0,181,2317 0/0:51,0:51:99:0,144,1910 0/1:8,18:26:99:529,0,220 0/0:29,0:29:78.24:0,78,976 0/1:10,8:18:99:165,0,328 0/0:27,0:27:81.24:0,81,989 0/0:16,0:16:48.15:0,48,610 0/0:37,0:37:99:0,105,1303 0/0:38,0:38:96.31:0,96,1244 0/0:28,0:28:75.23:0,75,936 0/0:35,0:35:96.30:0,96,1197 0/0:34,0:34:90.26:0,90,1146 0/0:41,0:41:99:0,108,1341 0/1:8,14:22:99:403,0,200 0/0:26,0:26:75.24:0,75,948 0/0:34,0:34:96.29:0,96,1184 0/0:28,0:28:78.24:0,78,977 0/1:15,11:26:99:284,0,487 12 108013765 . G A 75.15 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.805;DP=836;Dels=0.00;FS=3.261;HRun=0;HaplotypeScore=0.4919;InbreedingCoeff=-0.0122;MQ=58.85;MQ0=0;MQRankSum=-1.140;QD=8.35;ReadPosRankSum=1.146 GT:AD:DP:GQ:PL 0/0:22,0:22:63.13:0,63,652 0/0:20,0:20:60.14:0,60,632 0/0:21,0:21:57.14:0,57,622 0/0:24,0:24:72.18:0,72,803 0/0:29,0:29:84.24:0,84,978 0/0:18,0:18:54.16:0,54,643 0/0:18,0:18:51.15:0,51,600 0/0:19,0:19:57.16:0,57,689 0/0:19,0:19:51.14:0,51,576 0/0:18,0:19:42.11:0,42,452 0/0:15,0:15:42.06:0,42,422 0/0:19,0:19:57.13:0,57,601 0/0:10,0:10:30.07:0,30,317 0/0:21,0:21:51.12:0,51,552 0/0:56,0:56:99:0,153,1720 0/0:16,0:16:42.11:0,42,466 0/0:11,0:11:30.08:0,30,344 0/0:15,0:15:45.10:0,45,471 0/0:31,0:31:84.20:0,84,943 0/0:34,0:34:99:0,99,1085 0/0:27,0:27:72.19:0,72,812 0/0:26,0:26:78.16:0,78,827 0/0:31,0:31:90.25:0,90,1065 0/0:11,0:11:27.08:0,27,312 0/0:12,0:12:33.10:0,33,402 0/0:23,0:23:66.20:0,66,791 0/0:15,0:15:39.09:0,39,418 0/0:14,0:14:39.09:0,39,432 0/0:14,0:14:42.09:0,42,449 0/0:16,0:16:48.11:0,48,524 0/0:13,0:13:36.09:0,36,391 0/0:24,0:24:57.15:0,57,665 0/0:17,0:17:45.12:0,45,512 0/0:28,0:28:75.17:0,75,826 0/0:14,0:14:42.07:0,42,436 0/0:9,0:9:24.04:0,24,257 0/0:21,0:21:54.14:0,54,599 0/1:4,5:9:99:121,0,109 0/0:15,0:15:42.11:0,42,470 0/0:24,0:24:69.16:0,69,763 0/0:20,0:20:57.12:0,57,615 0/0:16,0:16:42.09:0,42,451 12 108096769 . G C 7601.71 . AC=7;AF=0.083;AN=84;BaseQRankSum=-13.613;DP=4054;DS;Dels=0.00;FS=13.924;HRun=0;HaplotypeScore=2.4848;InbreedingCoeff=-0.0909;MQ=59.53;MQ0=0;MQRankSum=0.470;QD=12.26;ReadPosRankSum=-0.512 GT:AD:DP:GQ:PL 0/0:93,2:97:99:0,202,3103 0/0:76,0:76:99:0,202,2572 0/0:94,0:94:99:0,247,3187 0/0:183,0:183:99:0,467,6336 0/1:90,83:173:99:2105,0,2709 0/0:128,0:128:99:0,337,4626 0/0:167,1:168:99:0,381,5623 0/0:146,0:146:99:0,358,4926 0/1:42,45:87:99:1291,0,1162 0/0:63,0:64:99:0,156,2013 0/1:41,26:67:99:658,0,1190 0/0:87,0:87:99:0,226,2895 0/0:78,0:78:99:0,199,2570 0/0:65,0:65:99:0,160,2088 0/0:246,0:246:99:0,620,8061 0/0:52,0:52:99:0,153,1945 0/0:91,0:91:99:0,232,2994 0/0:70,0:70:99:0,199,2494 0/0:93,0:93:99:0,232,3019 0/0:88,0:88:99:0,220,2866 0/0:90,0:90:99:0,223,2848 0/0:83,0:83:99:0,223,2864 0/0:197,0:197:99:0,488,6748 0/0:119,0:119:99:0,310,4231 0/0:124,0:124:99:0,337,4607 0/0:129,0:129:99:0,328,4472 0/0:62,0:62:99:0,160,2075 0/0:77,0:78:99:0,214,2683 0/0:70,0:70:99:0,178,2337 0/0:84,0:84:99:0,220,2831 0/0:73,0:73:99:0,196,2516 0/0:88,0:88:99:0,214,2794 0/0:57,0:57:99:0,153,1946 0/0:80,0:80:99:0,214,2727 0/0:69,0:69:99:0,187,2373 0/0:82,0:82:99:0,220,2820 0/1:42,26:68:99:673,0,1162 0/1:44,28:72:99:693,0,1195 0/0:64,0:64:99:0,175,2237 0/1:39,39:78:99:1046,0,1124 0/0:58,0:58:99:0,163,2058 0/1:31,44:75:99:1137,0,969 12 108604030 . CAA C 205.22 . AC=17;AF=0.202;AN=84;BaseQRankSum=-3.781;DP=285;FS=48.877;HRun=2;HaplotypeScore=22.2328;InbreedingCoeff=-0.2797;MQ=56.67;MQ0=0;MQRankSum=1.931;QD=1.65;ReadPosRankSum=-7.729 GT:AD:DP:GQ:PL 0/1:5,0:5:20.45:20,0,112 0/1:9,0:9:55.69:56,0,222 0/0:5,0:5:8.95:0,9,107 0/0:5,0:5:15.05:0,15,289 0/0:9,0:9:21.03:0,21,326 0/0:3,0:3:6.02:0,6,94 0/0:8,0:8:18.04:0,18,292 0/1:4,0:4:22.63:23,0,113 0/1:6,0:6:13.78:14,0,193 0/1:3,0:3:17.93:18,0,55 0/0:5,0:5:6.02:0,6,122 0/1:7,0:7:43.22:43,0,162 0/1:7,0:7:12.67:13,0,255 0/0:5,0:5:15.05:0,15,299 0/0:18,0:18:16.21:0,16,693 0/1:10,0:10:30.76:31,0,257 0/1:8,0:8:14.86:15,0,138 0/0:3,0:3:9.03:0,9,182 0/1:6,0:6:10.77:11,0,283 0/0:20,0:20:51.16:0,51,997 0/0:7,0:7:21.07:0,21,425 0/0:7,0:7:21.07:0,21,414 0/1:10,0:10:0.77:1,0,453 0/0:2,0:2:3.01:0,3,61 0/1:12,0:11:30.56:31,0,384 0/0:3,0:3:9.03:0,9,181 0/0:3,0:3:6.02:0,6,122 0/1:5,0:5:17.86:18,0,113 0/0:3,0:3:9.03:0,9,177 0/1:8,0:8:15.68:16,0,227 0/1:4,5:9:36.23:36,0,171 0/0:11,0:11:21.06:0,21,375 0/1:9,0:9:11.50:12,0,344 0/0:4,0:4:9.03:0,9,183 0/0:7,0:7:21.07:0,21,417 0/0:6,0:6:15.04:0,15,268 0/0:6,0:6:18.06:0,18,360 0/0:9,0:9:21.06:0,21,366 0/1:6,0:6:9.88:10,0,227 0/0:3,0:3:6:0,6,85 0/0:4,0:4:3.01:0,3,61 0/0:5,0:5:15.03:0,15,247 12 108604032 . A C 332.79 . AC=19;AF=0.226;AN=84;BaseQRankSum=-3.565;DP=361;Dels=0.01;FS=60.854;HRun=2;HaplotypeScore=0.4009;InbreedingCoeff=-0.3178;MQ=57.11;MQ0=0;MQRankSum=0.070;QD=2.12;ReadPosRankSum=-5.873 GT:AD:DP:GQ:PL 0/1:1,4:5:29.23:31,0,29 0/1:4,7:11:69.76:70,0,107 0/1:2,3:5:24.57:25,0,32 0/0:4,5:9:12.03:0,12,134 0/0:6,4:10:15.04:0,15,167 0/0:2,1:3:3.01:0,3,36 0/0:5,2:7:12.03:0,12,129 0/1:3,3:6:27.10:27,0,58 0/1:3,7:10:21.40:21,0,92 0/1:1,3:4:22.63:23,0,29 0/0:3,3:6:6.02:0,6,73 0/1:4,4:8:52.18:52,0,93 0/1:4,5:9:20.22:20,0,121 0/0:5,1:6:15.04:0,15,173 0/0:11,9:20:5.50:0,5,339 0/1:6,6:12:43.13:43,0,123 0/1:2,8:10:22.52:23,0,62 0/0:3,3:6:9.03:0,9,110 0/1:5,3:8:15.38:15,0,153 0/0:16,10:26:48.10:0,48,543 0/0:7,5:12:21.07:0,21,259 0/0:7,3:10:21.06:0,21,233 0/1:8,4:12:5.43:5,0,239 0/1:1,3:4:1.76:0,3,32 0/1:7,8:15:39.78:40,0,206 0/0:3,4:7:6.02:0,6,70 0/0:3,1:4:6.02:0,6,70 0/1:2,8:10:22.53:23,0,62 0/0:3,2:5:9.02:0,9,96 0/1:4,4:8:20.21:20,0,122 0/0:3,1:4:9.03:0,9,106 0/0:7,6:13:18.02:0,18,191 0/1:6,4:10:15.92:16,0,186 0/0:3,2:5:9.03:0,9,110 0/0:8,1:9:18.04:0,18,196 0/0:5,2:7:12.03:0,12,136 0/0:6,2:8:18.05:0,18,213 0/0:6,4:10:15.04:0,15,173 0/1:5,2:7:14.58:15,0,120 0/1:1,2:3:21.65:22,0,26 0/0:1,4:5:3.01:0,3,37 0/0:4,3:7:12.04:0,12,141 12 108604032 . A AC 351.60 . AC=24;AF=0.293;AN=82;BaseQRankSum=6.117;DP=405;FS=102.644;HRun=2;HaplotypeScore=54.6589;InbreedingCoeff=-0.3718;MQ=55.67;MQ0=0;MQRankSum=0.911;QD=1.45;ReadPosRankSum=-8.466 GT:AD:DP:GQ:PL 1/1:5,0:5:2.62:27,0,1 0/1:11,0:11:55.69:56,0,127 0/0:6,0:6:7.83:0,8,71 0/0:9,0:9:12.03:0,12,143 0/0:11,0:11:12.03:0,12,138 0/0:3,0:3:3.01:0,3,37 0/1:6,0:6:1.75:0,2,6 0/1:9,0:9:22.63:23,0,65 0/1:11,0:11:19.81:20,0,58 0/1:4,0:4:17.93:18,0,31 0/1:6,4:10:15.89:16,0,65 0/1:9,0:9:43.23:43,0,97 0/1:10,0:10:45.24:45,0,131 0/1:6,0:6:5.93:6,0,125 0/1:26,0:26:22.39:22,0,311 0/1:11,1:12:33.90:34,0,100 0/1:11,0:11:40.77:41,0,55 0/0:6,0:6:6.02:0,6,74 0/1:12,0:12:13.78:14,0,133 0/0:24,0:24:27.08:0,27,333 0/0:14,0:14:15.04:0,15,186 0/0:11,0:11:12.02:0,12,137 0/1:12,0:12:6.84:7,0,169 ./.:.:4:.:0,0,0 0/1:15,0:14:42.60:43,0,96 0/0:8,0:8:6.02:0,6,74 0/0:6,0:6:3:0,3,28 0/1:10,0:10:20.88:21,0,31 0/0:5,0:5:3.01:0,3,37 0/1:10,0:10:24.73:25,0,31 0/1:10,0:10:8.47:8,0,90 0/0:16,0:16:14.98:0,15,166 0/1:10,0:10:14.52:15,0,167 0/0:8,0:8:6.02:0,6,73 0/0:10,0:10:12.04:0,12,148 0/0:7,0:7:3.09:0,3,63 0/1:11,0:11:8.91:9,0,125 0/1:11,0:11:5.90:6,0,151 0/1:8,0:8:15.90:16,0,65 0/0:4,0:4:2.68:0,3,11 0/0:6,0:6:3.01:0,3,37 0/0:8,0:8:12.02:0,12,132 12 108618630 . C T 22512.29 . AC=23;AF=0.274;AN=84;BaseQRankSum=-18.178;DP=2999;Dels=0.00;FS=15.469;HRun=1;HaplotypeScore=1.5630;InbreedingCoeff=0.1019;MQ=59.43;MQ0=0;MQRankSum=-0.930;QD=17.22;ReadPosRankSum=-0.744 GT:AD:DP:GQ:PL 0/1:33,29:62:99:812,0,1047 0/0:65,0:65:99:0,184,2290 0/0:43,1:44:87.82:0,88,1525 0/0:173,0:174:99:0,448,6059 0/0:130,1:131:99:0,320,4754 0/0:101,0:101:99:0,265,3598 0/0:81,0:81:99:0,211,2871 0/0:104,0:105:99:0,292,3866 0/0:63,0:64:99:0,178,2265 0/0:46,0:46:99:0,117,1477 0/0:54,0:54:99:0,156,1975 0/1:20,25:45:99:684,0,587 0/0:49,0:49:99:0,141,1761 1/1:0,51:51:99:1843,150,0 0/1:78,87:165:99:2450,0,2031 0/0:51,0:51:99:0,141,1756 0/1:27,35:62:99:1034,0,808 0/1:28,28:56:99:778,0,794 0/1:40,30:70:99:820,0,1089 0/0:73,0:73:99:0,196,2480 0/0:83,0:83:99:0,238,2936 0/0:57,0:57:99:0,150,1938 0/0:130,2:132:99:0,292,4536 1/1:0,67:67:99:2293,181,0 0/1:62,38:101:99:1058,0,1926 0/1:39,38:77:99:1059,0,1135 1/1:0,59:59:99:1986,159,0 0/1:27,24:52:99:702,0,828 0/1:32,22:54:99:582,0,939 0/1:31,24:55:99:741,0,951 0/1:40,31:72:99:869,0,1237 0/0:73,0:74:99:0,187,2360 0/0:51,0:51:99:0,141,1793 0/0:55,0:55:99:0,156,1991 0/0:50,0:50:99:0,138,1749 0/0:54,0:54:99:0,156,1975 1/1:0,69:69:99:2339,190,0 0/1:32,35:67:99:990,0,939 0/1:34,38:72:99:1098,0,1039 0/0:55,0:55:99:0,156,1972 0/0:43,0:43:99:0,117,1486 0/1:36,15:51:99:374,0,1181 12 108620797 . G C 17.69 . AC=2;AF=0.024;AN=84;BaseQRankSum=-13.824;DP=2053;Dels=0.00;FS=559.647;HRun=2;HaplotypeScore=1.9623;InbreedingCoeff=-0.0388;MQ=58.93;MQ0=1;MQRankSum=0.391;QD=0.18;ReadPosRankSum=-15.755 GT:AD:DP:GQ:PL 0/0:38,7:45:68.57:0,69,941 0/0:23,10:33:6.24:0,6,547 0/0:24,3:27:29.16:0,29,624 0/0:75,30:105:99:0,126,1869 0/0:73,21:94:96.60:0,97,1719 0/0:38,13:51:65.55:0,66,914 0/0:27,10:37:58.92:0,59,598 0/0:63,17:80:99:0,100,1592 0/0:28,9:37:50.47:0,50,718 0/0:30,3:33:72.16:0,72,770 0/0:28,7:35:37.60:0,38,657 0/0:24,2:26:20.67:0,21,498 0/0:21,3:24:48.08:0,48,483 0/0:37,6:43:57.57:0,58,917 0/0:115,30:146:99:0,199,2632 0/0:41,8:49:80.51:0,81,1043 0/1:32,8:40:43.13:43,0,730 0/0:30,3:33:69.13:0,69,705 0/0:55,13:68:81.61:0,82,1355 0/0:69,11:80:99:0,149,1733 0/1:45,12:57:34.50:35,0,954 0/0:44,10:54:55.81:0,56,1009 0/0:66,28:94:99:0,104,1712 0/0:37,5:42:63.47:0,63,925 0/0:45,11:56:46.71:0,47,919 0/0:32,10:42:43.43:0,43,678 0/0:21,5:26:43.42:0,43,622 0/0:34,4:38:76.40:0,76,807 0/0:23,5:28:34.35:0,34,523 0/0:37,4:41:81.19:0,81,858 0/0:30,0:30:81.13:0,81,822 0/0:57,7:65:99:0,107,1286 0/0:40,11:52:57.51:0,58,1064 0/0:23,6:29:0.30:11,0,505 0/0:35,4:39:60.48:0,60,842 0/0:32,3:35:69.14:0,69,719 0/0:50,14:64:99:0,99,1263 0/0:33,7:40:60.55:0,61,865 0/0:37,5:42:87.17:0,87,892 0/0:21,7:28:57.13:0,57,602 0/0:24,6:30:29.67:0,30,581 0/0:29,6:35:47.46:0,47,724 12 108923950 . A G 157385.23 . AC=71;AF=0.845;AN=84;BaseQRankSum=1.699;DP=5905;DS;Dels=0.00;FS=5.894;HRun=0;HaplotypeScore=1.7931;InbreedingCoeff=-0.0011;MQ=59.47;MQ0=0;MQRankSum=1.170;QD=27.07;ReadPosRankSum=-0.980 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2674,223,0 0/1:50,53:103:99:1427,0,1378 0/1:57,56:113:99:1459,0,1554 1/1:0,234:234:99:8094,626,0 1/1:0,241:241:99:8181,629,0 0/1:132,117:249:99:3364,0,3678 1/1:0,236:236:99:8276,641,0 0/1:119,126:246:99:3588,0,3157 1/1:0,91:92:99:2826,232,0 1/1:0,90:90:99:2910,247,0 1/1:2,95:97:99:3133,204,0 0/1:53,44:97:99:1133,0,1382 1/1:1,94:95:99:2884,218,0 0/1:45,49:95:99:1283,0,1248 1/1:1,228:229:99:7202,578,0 1/1:0,76:76:99:2573,217,0 1/1:1,125:126:99:3873,293,0 1/1:0,91:91:99:2967,250,0 0/1:83,90:173:99:2422,0,2381 0/1:106,99:205:99:2597,0,2813 1/1:0,178:178:99:5552,457,0 1/1:0,84:84:99:2754,232,0 1/1:0,229:229:99:7898,611,0 1/1:0,246:247:99:8081,617,0 1/1:0,246:247:99:8024,614,0 1/1:0,243:243:99:7874,599,0 1/1:0,75:75:99:2358,199,0 1/1:0,86:86:99:2740,226,0 1/1:0,77:77:99:2534,217,0 1/1:0,103:103:99:3232,268,0 1/1:0,96:96:99:3226,271,0 1/1:0,168:168:99:5351,436,0 1/1:0,93:93:99:2938,247,0 0/1:46,59:105:99:1546,0,1256 1/1:0,122:122:99:3922,328,0 0/1:66,48:114:99:1320,0,1840 0/1:88,89:177:99:2274,0,2146 0/0:89,2:91:99:0,182,2886 1/1:0,102:102:99:3372,286,0 1/1:0,83:83:99:2739,232,0 1/1:0,99:99:99:3274,274,0 1/1:0,110:111:99:3511,295,0 12 108923989 . TTTC T 2349.69 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.609;DP=4412;DS;FS=1.119;HRun=0;HaplotypeScore=519.0904;InbreedingCoeff=-0.0244;MQ=59.47;MQ0=0;MQRankSum=-1.941;QD=17.03;ReadPosRankSum=-1.055 GT:AD:DP:GQ:PL 0/0:63,0:63:99:0,163,3341 0/0:72,0:72:99:0,190,3760 0/0:70,0:70:99:0,196,4098 0/0:223,0:222:99:0,617,12862 0/0:170,0:170:99:0,491,10050 0/0:226,0:221:99:0,605,12586 0/0:157,0:154:99:0,424,8674 0/0:189,0:181:99:0,500,10455 0/0:68,0:68:99:0,190,3843 0/0:67,0:67:99:0,190,3894 0/0:62,0:62:99:0,175,3498 0/0:75,0:75:99:0,214,4294 0/0:62,0:62:99:0,172,3541 0/0:62,0:62:99:0,172,3444 0/0:250,0:250:99:0,721,14942 0/0:71,0:71:99:0,196,3933 0/0:89,0:89:99:0,247,4807 0/0:48,0:48:99:0,129,2606 0/0:134,0:134:99:0,373,7511 0/0:144,0:144:99:0,382,7658 0/0:142,0:142:99:0,388,7663 0/0:52,0:52:99:0,129,2700 0/0:218,0:218:99:0,620,13139 0/0:163,0:156:99:0,458,9249 0/0:175,0:164:99:0,500,10134 0/0:166,0:165:99:0,464,9472 0/0:47,0:47:99:0,123,2490 0/0:61,0:61:99:0,157,3038 0/0:57,0:57:99:0,163,3279 0/1:35,35:70:99:1361,0,1514 0/0:73,0:73:99:0,199,3973 0/0:115,0:115:99:0,328,6595 0/1:41,27:68:99:1060,0,2103 0/0:66,0:66:99:0,181,3610 0/0:88,0:88:99:0,241,4951 0/0:75,0:75:99:0,199,3874 0/0:118,0:118:99:0,325,6292 0/0:71,0:71:99:0,205,4333 0/0:83,0:83:99:0,235,4956 0/0:65,0:65:99:0,178,3632 0/0:68,0:68:99:0,187,3797 0/0:69,0:69:99:0,199,4074 12 109527872 . T C 577.63 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.992;DP=3832;DS;Dels=0.00;FS=3.589;HRun=0;HaplotypeScore=1.8558;InbreedingCoeff=-0.0120;MQ=59.40;MQ0=0;MQRankSum=2.005;QD=9.96;ReadPosRankSum=0.795 GT:AD:DP:GQ:PL 0/0:65,0:65:99:0,172,2100 0/0:81,1:83:99:0,226,2671 0/0:62,0:62:99:0,172,2047 0/0:179,0:179:99:0,454,5666 0/0:141,1:142:99:0,385,4758 0/0:91,0:91:99:0,238,2983 0/0:91,0:91:99:0,223,2860 0/0:119,0:119:99:0,301,3797 0/0:80,0:80:99:0,214,2550 0/0:68,0:68:99:0,190,2272 0/1:34,24:58:99:624,0,978 0/0:77,3:81:99:0,178,2574 0/0:61,0:61:99:0,169,2026 0/0:72,0:72:99:0,202,2446 0/0:250,0:250:99:0,677,8112 0/0:68,0:68:99:0,187,2232 0/0:74,0:74:99:0,199,2375 0/0:87,0:87:99:0,238,2868 0/0:137,0:137:99:0,373,4577 0/0:120,0:120:99:0,316,3862 0/0:123,1:124:99:0,325,3965 0/0:80,0:80:99:0,220,2674 0/0:127,0:127:99:0,325,4033 0/0:80,0:80:99:0,220,2698 0/0:91,0:91:99:0,232,2890 0/0:75,0:75:99:0,205,2547 0/0:64,0:64:99:0,184,2176 0/0:75,0:75:99:0,205,2473 0/0:68,0:68:99:0,193,2309 0/0:68,0:68:99:0,190,2298 0/0:65,0:65:99:0,181,2190 0/0:105,0:105:99:0,286,3442 0/0:89,0:89:99:0,229,2793 0/0:65,0:65:99:0,184,2244 0/0:74,0:74:99:0,205,2498 0/0:89,0:89:99:0,238,2916 0/0:141,0:141:99:0,346,4318 0/0:70,0:70:99:0,190,2276 0/0:95,0:95:99:0,262,3132 0/0:73,0:73:99:0,208,2506 0/0:71,0:71:99:0,190,2270 0/0:55,0:55:99:0,156,1906 12 109605730 . C T 10209.87 . 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C T 58905.19 . 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A G 1203.56 . 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G A 3909.98 . 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G A 1545.88 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.305;DP=3086;Dels=0.00;FS=3.975;HRun=1;HaplotypeScore=2.2905;InbreedingCoeff=-0.0244;MQ=59.42;MQ0=0;MQRankSum=0.052;QD=15.46;ReadPosRankSum=-0.380 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,141,1668 0/0:51,0:51:99:0,144,1662 0/0:61,0:61:99:0,171,1987 0/0:147,0:147:99:0,391,4908 0/0:108,0:108:99:0,289,3652 0/0:102,0:102:99:0,262,3262 0/0:80,0:80:99:0,214,2679 0/0:97,0:97:99:0,259,3297 0/0:62,1:63:99:0,184,2137 0/1:20,24:44:99:726,0,483 0/0:52,0:52:99:0,147,1702 0/0:65,0:65:99:0,180,2114 0/0:49,0:49:99:0,135,1600 0/0:68,0:68:99:0,199,2324 0/0:182,0:182:99:0,487,5804 0/0:66,0:66:99:0,195,2203 0/0:51,0:52:99:0,150,1736 0/0:59,0:59:99:0,168,1953 0/0:103,0:104:99:0,280,3296 0/0:113,0:113:99:0,295,3479 0/0:84,0:85:99:0,226,2660 0/0:62,0:62:99:0,177,2076 0/0:155,0:155:99:0,403,5187 0/0:76,0:76:99:0,196,2578 0/0:95,0:95:99:0,247,3221 0/0:82,0:82:99:0,220,2757 0/0:43,0:43:99:0,129,1476 0/0:66,0:66:99:0,196,2291 0/0:32,0:32:90.26:0,90,1072 0/0:53,0:53:99:0,144,1646 0/0:51,0:51:99:0,147,1703 0/0:101,0:102:99:0,271,3327 0/0:67,0:67:99:0,183,2122 0/0:51,0:51:99:0,141,1630 0/0:53,0:53:99:0,150,1775 0/0:44,0:44:99:0,129,1527 0/0:78,1:79:99:0,217,2499 0/1:26,30:56:99:883,0,681 0/0:67,0:67:99:0,196,2281 0/0:46,0:46:99:0,135,1623 0/0:52,0:52:99:0,141,1643 0/0:56,0:56:99:0,165,1931 12 109841854 . C G 565.66 . 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T C 13228.47 . AC=50;AF=0.595;AN=84;BaseQRankSum=17.257;DP=642;Dels=0.00;FS=7.660;HRun=1;HaplotypeScore=0.1256;InbreedingCoeff=0.0083;MQ=59.03;MQ0=0;MQRankSum=1.184;QD=23.58;ReadPosRankSum=1.585 GT:AD:DP:GQ:PL 0/0:10,0:10:27.06:0,27,313 0/1:7,5:12:99:156,0,214 0/1:2,4:6:55.46:108,0,55 0/1:12,9:21:99:282,0,313 1/1:0,24:24:69.23:965,69,0 1/1:0,18:18:51.17:709,51,0 1/1:0,12:12:36.12:506,36,0 1/1:0,22:22:54.18:752,54,0 0/0:6,0:6:15.05:0,15,182 0/1:4,6:10:99:173,0,113 0/0:13,0:13:36.11:0,36,427 0/1:6,6:12:99:198,0,159 1/1:0,8:8:21.07:274,21,0 0/0:9,0:9:24.07:0,24,297 0/1:15,21:36:99:618,0,393 0/0:6,0:6:18.03:0,18,205 1/1:0,13:13:36.12:463,36,0 1/1:0,16:16:42.14:555,42,0 1/1:0,16:16:45.14:579,45,0 0/1:9,7:16:99:217,0,249 1/1:0,15:15:45.15:585,45,0 1/1:0,14:14:39.12:498,39,0 0/1:14,17:31:99:586,0,386 0/1:7,12:19:99:407,0,198 0/1:14,14:29:99:365,0,396 0/1:14,9:23:99:275,0,424 1/1:0,13:13:39.13:502,39,0 1/1:0,18:18:45.15:597,45,0 1/1:0,13:13:30.10:404,30,0 0/1:6,7:14:99:226,0,175 0/1:3,6:9:58.46:208,0,58 1/1:0,17:17:48.15:616,48,0 0/1:8,6:14:99:192,0,216 0/1:5,4:9:99:128,0,150 0/1:9,3:12:75.38:75,0,264 0/0:16,0:16:39.11:0,39,472 0/1:10,4:15:99:116,0,245 0/0:21,0:21:57.17:0,57,689 0/1:10,2:12:44.05:44,0,290 0/1:6,5:11:99:157,0,153 0/1:10,8:18:99:223,0,303 1/1:0,13:13:36.12:466,36,0 12 109872909 . C T 2113.64 . AC=5;AF=0.060;AN=84;BaseQRankSum=-12.273;DP=1192;Dels=0.00;FS=0.943;HRun=0;HaplotypeScore=0.2816;InbreedingCoeff=-0.0633;MQ=59.38;MQ0=0;MQRankSum=4.206;QD=10.62;ReadPosRankSum=1.641 GT:AD:DP:GQ:PL 0/0:19,0:19:48.15:0,48,618 0/0:27,1:28:47.66:0,48,926 0/0:18,0:18:51.16:0,51,659 0/0:45,0:45:99:0,129,1725 0/0:44,0:44:99:0,111,1551 0/0:51,0:51:99:0,135,1869 0/0:36,0:36:99:0,99,1396 0/0:39,0:39:99:0,111,1541 0/0:29,0:29:78.25:0,78,1010 0/0:23,0:23:66.21:0,66,829 0/0:26,0:26:66.21:0,66,859 0/0:24,0:24:57.18:0,57,754 0/0:20,0:20:51.16:0,51,655 0/0:20,0:20:57.17:0,57,704 0/1:33,22:55:99:506,0,934 0/0:15,0:15:42.14:0,42,543 0/1:18,11:29:99:312,0,482 0/0:17,0:17:48.15:0,48,596 0/0:50,0:50:99:0,126,1625 0/1:26,17:43:99:393,0,714 0/0:39,0:39:96.31:0,96,1259 0/0:22,0:22:63.19:0,63,779 0/0:47,0:47:99:0,120,1699 0/1:21,21:42:99:590,0,605 0/1:15,15:30:99:408,0,473 0/0:30,0:30:81.27:0,81,1118 0/0:11,0:11:33.10:0,33,414 0/0:23,0:23:60.19:0,60,772 0/0:19,0:19:51.16:0,51,664 0/0:17,0:17:48.15:0,48,609 0/0:17,0:17:42.14:0,42,553 0/0:40,0:40:99:0,102,1348 0/0:27,0:27:78.25:0,78,983 0/0:20,0:20:60.18:0,60,756 0/0:19,0:19:54.17:0,54,695 0/0:22,0:23:63.20:0,63,799 0/0:38,0:38:99:0,102,1328 0/0:22,0:22:60.19:0,60,765 0/0:14,0:14:39.12:0,39,492 0/0:25,0:25:69.22:0,69,900 0/0:16,0:16:45.14:0,45,573 0/0:20,0:20:51.17:0,51,672 12 109883374 . T C 74420.97 . 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A G 37455.59 . 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G A 589.73 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.809;DP=841;Dels=0.00;FS=4.202;HRun=1;HaplotypeScore=0.3415;InbreedingCoeff=-0.0244;MQ=58.45;MQ0=0;MQRankSum=-0.749;QD=13.71;ReadPosRankSum=0.777 GT:AD:DP:GQ:PL 0/1:11,9:20:99:270,0,352 0/1:10,13:23:99:382,0,316 0/0:9,0:9:27.09:0,27,340 0/0:13,0:14:39.12:0,39,511 0/0:18,0:18:54.17:0,54,720 0/0:23,0:23:69.22:0,69,901 0/0:18,0:18:51.17:0,51,695 0/0:15,0:15:45.15:0,45,596 0/0:20,0:20:60.19:0,60,756 0/0:17,0:17:51.16:0,51,631 0/0:28,0:28:84.25:0,84,1034 0/0:17,0:17:48.14:0,48,594 0/0:15,0:15:45.14:0,45,555 0/0:14,0:14:39.12:0,39,495 0/0:54,0:54:99:0,162,2037 0/0:31,0:31:90.28:0,90,1118 0/0:18,0:18:54.17:0,54,665 0/0:23,0:23:69.22:0,69,879 0/0:34,0:34:99:0,99,1240 0/0:26,0:26:72.23:0,72,906 0/0:18,0:19:51.16:0,51,638 0/0:12,0:12:36.11:0,36,443 0/0:26,0:26:78.25:0,78,1031 0/0:16,0:16:45.15:0,45,589 0/0:16,0:16:48.16:0,48,643 0/0:16,0:16:45.15:0,45,607 0/0:14,0:14:42.13:0,42,524 0/0:16,0:16:48.15:0,48,594 0/0:23,0:24:69.22:0,69,871 0/0:10,0:10:30.10:0,30,385 0/0:19,0:19:57.16:0,57,709 0/0:28,0:28:84.26:0,84,1042 0/0:17,0:17:51.15:0,51,622 0/0:17,0:17:51.16:0,51,641 0/0:19,0:19:57.18:0,57,714 0/0:14,0:14:39.13:0,39,501 0/0:25,0:25:66.21:0,66,822 0/0:24,0:24:72.23:0,72,891 0/0:22,0:22:66.20:0,66,829 0/0:24,0:24:72.23:0,72,907 0/0:11,0:11:33.11:0,33,419 0/0:15,0:15:45.14:0,45,577 12 110383141 . G A 574.93 . AC=3;AF=0.036;AN=84;BaseQRankSum=-6.350;DP=872;Dels=0.00;FS=4.323;HRun=0;HaplotypeScore=0.6140;InbreedingCoeff=-0.0372;MQ=59.27;MQ0=0;MQRankSum=2.898;QD=12.78;ReadPosRankSum=-1.014 GT:AD:DP:GQ:PL 0/0:11,0:11:30.10:0,30,389 0/0:15,0:15:42.12:0,42,517 0/1:4,5:9:79.63:149,0,80 0/0:38,0:39:99:0,99,1330 0/0:26,0:26:63.21:0,63,850 0/0:23,0:23:54.17:0,54,718 0/0:30,0:31:72.22:0,72,968 0/0:27,0:27:66.22:0,66,898 0/0:26,0:26:66.21:0,66,852 0/0:14,0:14:42.13:0,42,519 0/0:16,0:16:42.13:0,42,544 0/0:22,0:22:60.19:0,60,762 0/0:18,0:18:48.15:0,48,607 0/0:15,0:15:39.10:0,39,481 0/0:70,0:70:99:0,184,2357 0/0:18,0:18:48.15:0,48,599 0/0:17,0:18:48.15:0,48,604 0/0:13,0:13:36.09:0,36,451 0/0:25,0:25:69.20:0,69,855 0/0:27,0:27:72.23:0,72,908 0/0:24,0:24:63.20:0,63,804 0/1:6,12:18:99:315,0,157 0/0:20,0:20:60.17:0,60,783 0/0:14,0:14:39.11:0,39,515 0/0:31,0:31:78.26:0,78,1061 0/0:28,0:28:72.23:0,72,961 0/0:8,0:8:24.08:0,24,302 0/0:15,0:15:42.13:0,42,517 0/0:19,0:19:48.13:0,48,608 0/0:15,0:15:36.12:0,36,473 0/0:20,0:20:57.18:0,57,719 0/0:18,0:18:45.14:0,45,578 0/1:11,7:18:99:186,0,323 0/0:10,0:10:24.07:0,24,302 0/0:13,0:14:39.11:0,39,464 0/0:25,0:25:72.22:0,72,899 0/0:25,0:26:57.16:0,57,725 0/0:15,0:15:39.12:0,39,498 0/0:23,0:23:63.18:0,63,783 0/0:18,0:18:54.16:0,54,670 0/0:14,0:14:39.13:0,39,502 0/0:16,0:16:48.14:0,48,591 12 110390905 . G A 2048.88 . AC=2;AF=0.024;AN=84;BaseQRankSum=6.718;DP=2014;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9314;InbreedingCoeff=-0.0244;MQ=59.02;MQ0=0;MQRankSum=0.331;QD=13.48;ReadPosRankSum=0.949 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,132,1447 0/0:42,0:42:99:0,117,1304 0/0:36,0:36:99:0,105,1170 0/0:72,0:72:99:0,199,2443 0/0:59,0:59:99:0,165,2012 0/0:58,0:58:99:0,159,1951 0/0:59,0:60:99:0,175,2101 0/0:61,0:61:99:0,178,2105 0/0:46,0:46:99:0,126,1416 0/0:35,0:35:90.24:0,90,1021 0/0:43,0:43:99:0,120,1286 0/0:40,0:40:99:0,111,1244 0/0:31,0:31:93.24:0,93,1020 0/0:42,0:42:99:0,120,1357 0/1:57,50:107:99:1356,0,1515 0/0:33,0:33:90.25:0,90,1033 0/1:20,25:45:99:755,0,478 0/0:36,0:36:99:0,108,1169 0/0:52,0:53:99:0,147,1604 0/0:55,0:55:99:0,150,1692 0/0:58,0:58:99:0,156,1782 0/0:38,0:38:99:0,111,1245 0/0:84,0:84:99:0,229,2824 0/0:58,0:58:99:0,165,1994 0/0:64,0:64:99:0,187,2306 0/0:50,0:50:99:0,135,1635 0/0:38,0:38:99:0,111,1236 0/0:49,0:49:99:0,141,1518 0/0:35,0:35:99:0,99,1132 0/0:32,0:32:93.22:0,93,1017 0/0:40,0:40:99:0,117,1298 0/0:60,0:60:99:0,165,1870 0/0:39,0:39:99:0,108,1207 0/0:31,0:32:90.24:0,90,999 0/0:52,0:52:99:0,150,1620 0/0:38,0:38:99:0,114,1255 0/0:37,0:37:99:0,105,1185 0/0:44,0:44:99:0,123,1342 0/0:40,0:40:99:0,111,1215 0/0:39,0:39:99:0,114,1246 0/0:43,0:43:99:0,126,1423 0/0:42,0:42:99:0,123,1331 12 110566907 . A G 1726.15 . AC=2;AF=0.024;AN=84;BaseQRankSum=9.353;DP=2674;Dels=0.00;FS=0.981;HRun=2;HaplotypeScore=1.2414;InbreedingCoeff=-0.0244;MQ=59.43;MQ0=0;MQRankSum=-0.515;QD=11.43;ReadPosRankSum=1.235 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,132,1595 0/0:42,0:42:99:0,117,1443 0/0:45,0:45:99:0,120,1482 0/0:121,0:122:99:0,307,3790 0/1:64,41:105:99:1092,0,1802 0/0:105,0:105:99:0,295,3700 0/0:107,0:107:99:0,286,3548 0/0:79,0:79:99:0,202,2532 0/0:49,0:49:99:0,141,1670 0/0:48,0:49:99:0,123,1493 0/0:42,0:42:99:0,111,1345 0/0:53,0:53:99:0,144,1754 0/0:39,0:39:99:0,102,1244 0/0:34,0:34:99:0,99,1196 0/0:174,0:174:99:0,448,5448 0/0:51,0:51:99:0,135,1637 0/0:47,0:47:99:0,123,1506 0/0:46,0:46:99:0,129,1558 0/0:84,0:84:99:0,223,2771 0/0:61,0:61:99:0,159,1983 0/0:65,0:65:99:0,178,2134 0/0:45,0:45:99:0,123,1506 0/0:123,0:123:99:0,328,4069 0/0:82,0:82:99:0,220,2743 0/0:90,0:90:99:0,229,2906 0/0:97,0:97:99:0,256,3209 0/0:49,0:49:99:0,132,1597 0/0:45,0:46:99:0,120,1460 0/0:41,0:41:99:0,111,1356 0/0:68,0:68:99:0,181,2196 0/0:30,0:31:87.27:0,87,1054 0/0:78,0:78:99:0,202,2500 0/0:48,0:48:99:0,138,1670 0/0:34,0:34:96.29:0,96,1156 0/0:58,0:58:99:0,166,1999 0/0:45,0:45:99:0,120,1463 0/0:70,0:70:99:0,193,2338 0/0:53,0:53:99:0,144,1749 0/0:45,0:45:99:0,129,1550 0/0:44,0:44:99:0,117,1448 0/0:34,0:34:93.28:0,93,1125 0/1:22,23:45:99:696,0,592 12 110618235 . A G 218.13 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.654;DP=985;Dels=0.00;FS=3.320;HRun=1;HaplotypeScore=0.2871;InbreedingCoeff=-0.0121;MQ=59.36;MQ0=0;MQRankSum=1.816;QD=8.08;ReadPosRankSum=-0.487 GT:AD:DP:GQ:PL 0/0:20,0:20:54.17:0,54,681 0/0:15,0:15:45.14:0,45,550 0/0:20,0:20:57.17:0,57,697 0/0:25,0:25:72.22:0,72,869 0/0:24,0:24:69.21:0,69,849 0/0:18,0:18:48.15:0,48,600 0/0:26,0:26:75.23:0,75,926 0/0:31,0:31:87.27:0,87,1085 0/0:30,0:30:84.25:0,84,1017 0/0:26,0:26:69.21:0,69,838 0/0:23,0:23:66.21:0,66,812 0/0:18,0:18:51.16:0,51,628 0/0:21,0:21:57.18:0,57,705 0/0:15,0:15:42.13:0,42,514 0/0:77,0:77:99:0,214,2581 0/0:11,0:11:33.10:0,33,396 0/0:17,0:17:51.15:0,51,613 0/0:22,0:22:66.19:0,66,784 0/0:12,0:12:30.09:0,30,371 0/0:13,0:13:36.11:0,36,445 0/0:28,0:28:72.23:0,72,918 0/0:23,0:23:63.17:0,63,758 0/0:25,0:25:75.23:0,75,910 0/0:26,0:26:69.22:0,69,880 0/0:32,0:32:93.29:0,93,1150 0/0:25,0:25:69.22:0,69,862 0/0:22,0:22:60.18:0,60,744 0/0:26,0:26:72.23:0,72,897 0/0:13,0:13:36.11:0,36,445 0/0:21,0:21:57.16:0,57,679 0/0:19,0:19:54.16:0,54,649 0/0:31,0:31:81.25:0,81,1010 0/0:15,0:15:42.13:0,42,517 0/0:24,0:24:69.21:0,69,849 0/1:17,10:27:99:264,0,505 0/0:29,0:29:75.24:0,75,950 0/0:25,0:25:72.20:0,72,847 0/0:20,0:20:57.17:0,57,685 0/0:19,0:19:57.17:0,57,677 0/0:24,0:24:66.20:0,66,809 0/0:23,0:23:66.20:0,66,804 0/0:24,0:24:69.21:0,69,850 12 110719675 . A G 290.23 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.993;DP=417;Dels=0.00;FS=2.529;HRun=0;HaplotypeScore=0.2440;InbreedingCoeff=-0.0310;MQ=58.64;MQ0=0;MQRankSum=0.492;QD=17.07;ReadPosRankSum=-0.779 GT:AD:DP:GQ:PL 0/1:4,9:13:76.31:279,0,76 0/1:1,3:4:27.95:74,0,28 0/0:14,0:14:36.11:0,36,453 0/0:15,0:15:36.11:0,36,466 0/0:15,0:15:42.12:0,42,520 0/0:10,0:10:30.10:0,30,385 0/0:9,0:9:21.06:0,21,279 0/0:11,0:11:24.08:0,24,318 0/0:5,0:5:15.05:0,15,180 0/0:7,0:7:21.06:0,21,243 0/0:8,0:8:21.06:0,21,252 0/0:13,0:13:30.09:0,30,378 0/0:11,0:11:27.08:0,27,338 0/0:6,0:6:15.04:0,15,177 0/0:21,0:21:54.17:0,54,677 0/0:3,0:3:9.03:0,9,108 0/0:17,0:17:42.13:0,42,529 0/0:5,0:5:15.05:0,15,182 0/0:15,0:15:36.11:0,36,453 0/0:12,0:12:36.11:0,36,425 0/0:8,0:8:15.05:0,15,186 0/0:9,0:9:27.08:0,27,321 0/0:20,0:20:54.17:0,54,684 0/0:10,0:10:21.07:0,21,289 0/0:13,0:13:36.12:0,36,466 0/0:9,0:9:21.07:0,21,282 0/0:9,0:9:21.06:0,21,264 0/0:10,0:10:24.08:0,24,309 0/0:14,0:14:33.10:0,33,424 0/0:5,0:5:15.05:0,15,179 0/0:6,0:6:18.06:0,18,220 0/0:11,0:11:33.10:0,33,396 0/0:9,0:9:24.07:0,24,295 0/0:6,0:6:18.05:0,18,217 0/0:6,0:6:15.05:0,15,190 0/0:10,0:10:30.09:0,30,362 0/0:8,0:8:21.06:0,21,259 0/0:7,0:7:21.07:0,21,258 0/0:2,0:2:6.02:0,6,74 0/0:15,0:15:39.12:0,39,478 0/0:7,0:7:18.05:0,18,220 0/0:9,0:9:24.07:0,24,297 12 110820746 . G T 86.39 . AC=1;AF=0.012;AN=84;BaseQRankSum=-20.406;DP=10472;DS;Dels=0.00;FS=679.104;HRun=1;HaplotypeScore=3.6347;InbreedingCoeff=-0.0348;MQ=59.61;MQ0=0;MQRankSum=0.331;QD=0.35;ReadPosRankSum=-19.005 GT:AD:DP:GQ:PL 0/0:236,13:250:99:0,507,7116 0/0:241,9:250:99:0,536,6691 0/0:235,15:250:99:0,506,6743 0/0:226,24:250:99:0,421,6075 0/0:234,15:250:99:0,453,6294 0/0:221,29:250:99:0,352,6167 0/0:232,17:250:99:0,436,6560 0/0:234,14:250:99:0,474,6474 0/0:225,25:250:99:0,358,6229 0/0:233,17:250:99:0,533,6748 0/0:232,18:250:99:0,470,6454 0/0:238,12:250:99:0,451,6721 0/0:233,17:250:99:0,432,6639 0/0:238,11:250:99:0,466,6621 0/0:201,47:250:0.48:9,0,2874 0/0:234,16:250:99:0,470,6452 0/0:235,14:250:99:0,506,6586 0/0:237,13:250:99:0,514,6739 0/1:215,35:250:99:130,0,4196 0/0:221,29:250:99:0,314,5540 0/0:207,43:250:99:0,103,4624 0/0:239,11:250:99:0,541,6770 0/0:224,26:250:99:0,422,6161 0/0:216,34:250:99:0,448,6142 0/0:227,22:250:99:0,443,5927 0/0:231,18:250:99:0,511,6665 0/0:213,9:222:99:0,438,5771 0/0:238,12:250:99:0,489,6680 0/0:238,12:250:99:0,518,6746 0/0:238,12:250:99:0,487,6720 0/0:233,16:250:99:0,520,7212 0/0:221,27:250:99:0,308,5764 0/0:234,15:250:99:0,562,6961 0/0:237,13:250:99:0,506,6810 0/0:235,15:250:99:0,502,6814 0/0:241,9:250:99:0,495,6763 0/0:206,44:250:0.30:11,0,3719 0/0:233,16:250:99:0,455,6251 0/0:232,18:250:99:0,415,6356 0/0:231,19:250:99:0,459,6730 0/0:234,15:250:99:0,514,6516 0/0:240,10:250:99:0,532,7139 12 110960004 . G C 64.36 . 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G A 1172.33 . 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G A 9683.32 . 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C T 1069.92 . 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A C 3545.93 . 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G T 25808.13 . 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C T 875.31 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.267;DP=1342;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9100;InbreedingCoeff=-0.0244;MQ=59.26;MQ0=0;MQRankSum=-0.509;QD=16.52;ReadPosRankSum=0.612 GT:AD:DP:GQ:PL 0/0:33,0:33:78.23:0,78,939 0/0:30,0:30:69.15:0,69,796 0/0:19,0:19:54.12:0,54,598 0/0:55,0:55:99:0,132,1645 0/0:32,0:32:84.23:0,84,1018 0/0:27,0:27:75.23:0,75,940 0/0:29,1:30:40.41:0,40,884 0/0:39,0:39:93.23:0,93,1124 0/0:24,0:24:63.14:0,63,672 0/0:15,0:15:36.10:0,36,426 0/0:33,0:33:90.25:0,90,1035 0/0:14,0:14:36.07:0,36,396 0/0:19,0:19:54.12:0,54,592 0/0:27,0:27:78.20:0,78,876 0/0:92,0:92:99:0,226,2657 0/0:27,0:28:75.20:0,75,862 0/0:28,0:28:72.18:0,72,820 0/0:24,0:24:72.20:0,72,808 0/0:53,0:53:99:0,129,1474 0/0:40,0:40:99:0,99,1162 0/0:51,0:51:99:0,129,1473 0/0:34,0:34:90.25:0,90,1046 0/0:51,0:51:99:0,129,1615 0/0:27,0:27:63.18:0,63,766 0/0:24,0:24:60.16:0,60,739 0/0:34,0:34:84.25:0,84,1064 0/1:9,12:21:99:348,0,230 0/1:13,19:32:99:590,0,278 0/0:26,0:26:66.16:0,66,749 0/0:22,0:22:60.17:0,60,701 0/0:23,0:23:57.15:0,57,644 0/0:60,0:60:99:0,159,1880 0/0:40,0:40:99:0,102,1132 0/0:26,0:26:66.16:0,66,762 0/0:12,0:12:33.08:0,33,356 0/0:20,1:21:31.49:0,31,611 0/0:57,0:57:99:0,153,1750 0/0:21,0:21:54.16:0,54,647 0/0:32,0:32:87.22:0,87,976 0/0:21,0:21:54.15:0,54,636 0/0:22,0:22:60.14:0,60,682 0/0:23,0:23:63.15:0,63,714 12 112165857 . C G 218.52 . 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C T 4650.47 . AC=5;AF=0.060;AN=84;BaseQRankSum=6.313;DP=2557;Dels=0.00;FS=0.316;HRun=0;HaplotypeScore=2.5465;InbreedingCoeff=-0.0633;MQ=59.01;MQ0=0;MQRankSum=-0.862;QD=12.64;ReadPosRankSum=2.823 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,108,1281 0/0:46,0:46:99:0,126,1406 0/0:42,0:43:99:0,108,1260 0/0:138,0:138:99:0,352,4352 0/0:116,0:116:99:0,313,3836 0/0:101,0:101:99:0,274,3326 0/1:51,42:93:99:1212,0,1315 0/0:82,0:82:99:0,217,2695 0/0:37,0:37:93.24:0,93,1070 0/0:40,1:41:70.68:0,71,1103 0/0:43,0:43:99:0,117,1335 0/0:35,0:35:99:0,99,1130 0/0:33,0:33:96.24:0,96,1061 0/0:42,0:42:99:0,120,1323 0/0:133,0:133:99:0,370,4211 0/0:36,0:36:99:0,105,1161 0/0:38,0:38:99:0,105,1219 0/0:46,0:46:99:0,126,1451 0/1:35,27:62:99:742,0,940 0/1:37,51:88:99:1311,0,917 0/0:86,0:86:99:0,247,2755 0/0:55,0:55:99:0,153,1732 0/0:127,0:127:99:0,313,3966 0/0:69,0:69:99:0,168,2098 0/0:91,0:91:99:0,229,2902 0/0:90,0:90:99:0,229,2838 0/0:46,0:46:99:0,135,1475 0/0:30,0:30:81.19:0,81,899 0/0:49,0:49:99:0,132,1546 0/0:43,0:43:99:0,126,1397 0/1:26,16:42:99:410,0,726 0/1:45,38:83:99:975,0,1154 0/0:56,0:56:99:0,147,1631 0/0:38,0:38:99:0,108,1215 0/0:38,1:39:62.30:0,62,1087 0/0:37,0:37:99:0,105,1163 0/0:69,0:69:99:0,190,2144 0/0:48,0:48:99:0,126,1417 0/0:48,0:48:99:0,129,1481 0/0:38,0:38:99:0,108,1190 0/0:45,1:46:93.21:0,93,1384 0/0:32,0:32:93.24:0,93,1040 12 112638486 . G T 1683.47 . AC=2;AF=0.024;AN=84;BaseQRankSum=-9.670;DP=2701;Dels=0.00;FS=0.505;HRun=2;HaplotypeScore=1.7880;InbreedingCoeff=-0.0244;MQ=59.20;MQ0=0;MQRankSum=0.619;QD=14.64;ReadPosRankSum=-0.460 GT:AD:DP:GQ:PL 0/0:59,1:60:99:0,145,2179 0/0:62,0:62:99:0,172,2178 0/0:54,0:54:99:0,157,1995 0/0:84,0:84:99:0,226,3020 0/0:63,0:63:99:0,178,2420 0/0:62,0:62:99:0,169,2268 0/0:64,0:64:99:0,169,2279 0/0:47,0:47:99:0,138,1840 0/1:24,31:55:99:878,0,740 0/1:31,29:60:99:868,0,942 0/0:56,1:57:99:0,126,1989 0/0:57,0:57:99:0,169,2120 0/0:42,0:42:99:0,120,1502 0/0:57,0:57:99:0,166,2069 0/0:186,0:186:99:0,509,6538 0/0:52,0:52:99:0,153,1924 0/0:49,0:49:99:0,144,1818 0/0:56,0:56:99:0,166,2099 0/0:89,0:89:99:0,247,3100 0/0:98,0:98:99:0,274,3470 0/0:89,0:89:99:0,247,3103 0/0:62,0:62:99:0,178,2245 0/0:70,0:70:99:0,199,2691 0/0:41,0:41:99:0,117,1598 0/0:55,0:55:99:0,153,2055 0/0:47,0:47:99:0,129,1660 0/0:38,0:38:99:0,105,1343 0/0:63,0:63:99:0,181,2277 0/0:55,0:55:99:0,163,2035 0/0:60,0:60:99:0,178,2222 0/0:52,0:52:99:0,153,1960 0/0:104,0:104:99:0,286,3668 0/0:77,0:77:99:0,226,2855 0/0:58,0:59:99:0,163,2050 0/0:54,0:54:99:0,153,1921 0/0:57,0:57:99:0,166,2085 0/0:91,0:91:99:0,250,3162 0/0:64,0:64:99:0,181,2282 0/0:48,0:48:99:0,141,1782 0/0:56,0:56:99:0,156,1989 0/0:50,0:50:99:0,138,1766 0/0:55,0:55:99:0,162,2022 12 112892433 . T G 166.11 . AC=6;AF=0.071;AN=84;BaseQRankSum=18.038;DP=2948;DS;Dels=0.00;FS=10.728;HRun=0;HaplotypeScore=0.8767;InbreedingCoeff=-0.0770;MQ=58.11;MQ0=6;MQRankSum=-14.325;QD=0.46;ReadPosRankSum=5.860 GT:AD:DP:GQ:PL 0/1:55,10:65:99:104,0,1646 0/0:45,2:47:99:0,123,1478 0/0:59,1:60:99:0,135,1997 0/0:118,8:126:99:0,172,3692 0/0:121,3:124:99:0,265,3948 0/0:96,2:99:99:0,226,3259 0/0:91,0:91:99:0,250,3040 0/0:73,4:77:99:0,124,2395 0/0:62,2:64:99:0,171,2016 0/0:51,4:55:30.16:0,30,1531 0/0:46,2:48:77.05:0,77,1442 0/1:53,8:61:30.94:31,0,1581 0/0:43,5:48:18.55:0,19,1369 0/1:48,6:54:18.44:18,0,1401 0/0:194,9:203:99:0,305,5803 0/0:40,3:43:39.24:0,39,1204 0/1:56,8:64:45.95:46,0,1682 0/1:58,7:65:14.96:15,0,1683 0/0:73,5:79:93.70:0,94,2240 0/0:63,6:69:37.20:0,37,1851 0/0:55,5:60:33.58:0,34,1595 0/0:36,4:40:27.96:0,28,1145 0/0:123,0:123:99:0,334,4036 0/0:94,4:98:99:0,170,2992 0/0:92,2:94:99:0,199,2949 0/0:91,2:93:99:0,190,2825 0/0:46,4:50:14.98:0,15,1340 0/0:65,2:67:99:0,131,2101 0/0:58,3:61:99:0,106,1906 0/0:71,3:74:99:0,102,2230 0/1:45,8:53:56.10:56,0,1332 0/0:58,4:62:50.88:0,51,1758 0/0:35,2:37:42.06:0,42,1113 0/0:44,2:46:89.38:0,89,1453 0/0:61,2:64:99:0,125,1961 0/0:55,2:57:99:0,103,1712 0/0:58,1:59:99:0,129,1818 0/0:49,3:52:76.50:0,77,1563 0/0:57,2:59:99:0,101,1864 0/0:56,4:60:56.36:0,56,1675 0/0:45,3:48:65.96:0,66,1468 0/0:49,0:49:99:0,135,1609 12 112892458 . T C 131.63 . AC=4;AF=0.048;AN=84;BaseQRankSum=8.122;DP=2731;Dels=0.00;FS=6.337;HRun=0;HaplotypeScore=1.1470;InbreedingCoeff=-0.0500;MQ=58.44;MQ0=1;MQRankSum=-11.859;QD=0.67;ReadPosRankSum=-1.859 GT:AD:DP:GQ:PL 0/1:42,8:50:96.87:97,0,1315 0/0:45,1:46:99:0,123,1529 0/0:52,0:52:99:0,141,1754 0/0:104,5:109:99:0,135,3277 0/0:108,2:110:99:0,253,3759 0/0:85,1:86:99:0,204,2921 0/0:83,0:83:99:0,229,2992 0/0:78,4:82:99:0,127,2626 0/0:48,0:48:99:0,138,1682 0/0:51,3:54:73.13:0,73,1723 0/0:38,2:40:59:0,59,1271 0/0:60,4:64:41.92:0,42,1926 0/0:44,3:47:32.48:0,32,1378 0/0:40,3:43:31.71:0,32,1327 0/0:211,6:218:99:0,393,6803 0/0:37,2:39:55.98:0,56,1219 0/1:52,8:60:49.47:49,0,1677 0/1:44,5:49:33.61:34,0,1462 0/0:69,4:73:92.45:0,92,2170 0/0:63,4:67:54.86:0,55,1956 0/0:54,2:56:92.11:0,92,1717 0/0:33,2:35:51.53:0,52,1103 0/0:115,0:115:99:0,319,4055 0/0:80,2:82:99:0,150,2705 0/0:76,1:77:99:0,165,2480 0/0:81,2:83:99:0,181,2786 0/0:49,2:51:65.78:0,66,1540 0/0:59,2:61:99:0,122,2047 0/0:62,1:63:99:0,148,2082 0/0:72,2:74:99:0,135,2364 0/1:33,4:37:38.46:38,0,1068 0/0:60,3:63:61.40:0,61,1787 0/0:43,1:44:77.38:0,77,1369 0/0:42,1:43:86.41:0,86,1460 0/0:49,1:50:98.68:0,99,1493 0/0:57,1:58:99:0,132,1909 0/0:66,1:67:99:0,147,2133 0/0:52,2:54:99:0,99,1717 0/0:53,2:55:83.49:0,83,1749 0/0:43,3:46:36.27:0,36,1409 0/0:46,2:48:72.16:0,72,1527 0/0:49,0:49:99:0,144,1778 12 113348870 . G A 28220.32 . AC=27;AF=0.321;AN=84;BaseQRankSum=21.265;DP=2810;Dels=0.00;FS=3.076;HRun=0;HaplotypeScore=3.3389;InbreedingCoeff=-0.0370;MQ=58.89;MQ0=0;MQRankSum=2.194;QD=17.66;ReadPosRankSum=6.348 GT:AD:DP:GQ:PL 0/0:59,1:60:99:0,129,1785 0/0:49,0:49:99:0,132,1499 0/1:30,30:61:99:838,0,741 0/0:99,1:100:99:0,224,3188 0/1:35,44:79:99:1359,0,976 1/1:0,60:60:99:2092,163,0 1/1:0,66:66:99:2274,178,0 1/1:0,69:69:99:2421,187,0 0/0:51,0:51:99:0,132,1532 0/0:57,0:57:99:0,144,1705 0/0:60,0:60:99:0,162,1853 0/0:54,0:54:99:0,147,1670 0/1:31,21:52:99:558,0,813 0/1:34,27:61:99:774,0,862 0/1:91,111:204:99:3104,0,2239 1/1:0,63:63:99:2143,178,0 0/0:44,0:44:99:0,120,1400 0/0:73,0:73:99:0,190,2217 0/0:81,0:81:99:0,211,2417 0/0:92,0:92:99:0,262,2977 0/0:79,0:79:99:0,192,2241 0/0:60,0:60:99:0,171,1943 0/1:54,51:105:99:1423,0,1481 0/1:29,30:60:99:848,0,872 0/1:34,42:76:99:1177,0,903 0/0:75,1:77:99:0,147,2282 0/0:32,0:32:84.23:0,84,966 0/0:55,3:58:99:0,111,1653 0/1:23,23:46:99:595,0,667 0/1:22,22:44:99:661,0,550 0/1:22,26:48:99:754,0,571 0/0:87,0:88:99:0,226,2704 0/1:26,29:55:99:824,0,689 0/0:35,0:35:99:0,102,1162 0/1:28,25:54:99:735,0,745 0/1:33,22:55:99:635,0,819 0/1:56,38:94:99:1105,0,1265 0/0:62,0:62:99:0,162,1882 0/1:26,31:57:99:926,0,645 0/1:23,29:52:99:925,0,624 0/1:34,44:78:99:1227,0,804 0/1:31,28:59:99:822,0,757 12 113376388 . G A 6990.33 . AC=33;AF=0.393;AN=84;BaseQRankSum=-4.222;DP=599;Dels=0.00;FS=0.319;HRun=2;HaplotypeScore=0.8162;InbreedingCoeff=-0.0499;MQ=58.41;MQ0=0;MQRankSum=-0.529;QD=18.20;ReadPosRankSum=-0.370 GT:AD:DP:GQ:PL 0/0:15,0:15:39.12:0,39,468 0/1:3,4:7:76.43:113,0,76 1/1:0,8:8:21.05:247,21,0 0/0:29,0:29:84.26:0,84,1068 0/1:18,11:29:99:254,0,466 1/1:0,23:23:57.16:712,57,0 1/1:0,13:13:36.06:430,36,0 1/1:0,15:15:39.12:481,39,0 0/0:15,0:15:36.11:0,36,458 0/1:4,3:7:54.19:54,0,111 0/0:7,0:7:15.05:0,15,199 0/0:18,0:18:45.12:0,45,544 0/1:2,5:7:56.05:159,0,56 0/1:2,8:10:14.51:216,0,15 0/1:10,14:24:99:338,0,238 1/1:0,18:18:51.15:602,51,0 0/0:9,0:9:24.08:0,24,306 0/0:7,0:7:21.07:0,21,259 0/0:19,0:19:42.12:0,42,502 0/0:16,0:16:42.12:0,42,503 0/0:19,0:19:51.16:0,51,632 0/0:12,0:12:33.09:0,33,406 0/1:16,16:32:99:455,0,391 0/1:2,16:18:31.17:469,0,31 0/1:13,8:21:99:199,0,347 0/0:25,0:25:69.19:0,69,877 0/1:5,10:15:99:258,0,119 0/0:11,0:11:27.08:0,27,335 1/1:0,12:12:33.10:400,33,0 0/1:7,4:11:99:111,0,228 0/1:4,4:8:45.75:46,0,128 0/1:15,6:21:99:144,0,364 0/1:4,7:11:99:223,0,109 0/0:6,0:6:15.04:0,15,176 0/1:9,5:14:99:140,0,297 0/1:4,7:11:99:215,0,117 0/1:9,8:17:99:207,0,208 0/0:7,0:7:18.04:0,18,202 0/1:1,3:4:26.54:97,0,27 0/1:8,3:11:81.54:82,0,216 0/1:3,4:7:58.32:124,0,58 0/1:3,7:10:57:214,0,57 12 113376452 . C T 4916.07 . AC=32;AF=0.381;AN=84;BaseQRankSum=-5.757;DP=363;Dels=0.00;FS=7.849;HRun=0;HaplotypeScore=0.1657;InbreedingCoeff=-0.0593;MQ=57.88;MQ0=0;MQRankSum=-0.623;QD=19.59;ReadPosRankSum=-1.684 GT:AD:DP:GQ:PL 0/0:7,0:7:18.05:0,18,216 0/1:2,3:5:50.95:92,0,51 1/1:0,4:4:9.02:92,9,0 0/0:12,0:12:36.11:0,36,443 0/1:9,9:18:99:280,0,238 1/1:0,10:10:30.09:356,30,0 1/1:0,3:3:6.02:74,6,0 1/1:0,9:9:27.08:323,27,0 0/0:7,0:7:18.05:0,18,227 0/1:2,3:5:62.06:96,0,62 0/0:4,0:4:12.04:0,12,150 0/0:2,0:2:6.02:0,6,69 0/1:2,5:7:29.71:129,0,30 0/1:4,4:8:99:116,0,102 0/1:12,8:20:99:126,0,318 1/1:1,10:11:30.05:332,30,0 0/0:2,0:2:6.02:0,6,80 0/0:6,0:6:18.06:0,18,223 0/0:14,0:14:39.12:0,39,486 0/0:14,0:14:42.12:0,42,500 0/0:9,0:9:21.06:0,21,249 0/0:7,0:7:18.06:0,18,233 0/1:10,19:29:99:577,0,310 0/1:4,4:8:99:116,0,138 0/1:3,5:8:82.43:122,0,82 0/0:10,0:10:30.10:0,30,389 0/1:4,5:9:62.25:156,0,62 0/0:5,0:5:15.05:0,15,180 1/1:0,9:9:27.08:322,27,0 0/1:6,5:11:99:144,0,146 0/1:3,2:5:57.13:60,0,57 0/1:6,8:14:99:208,0,191 0/1:2,9:11:42.34:293,0,42 0/0:3,0:3:9.03:0,9,115 0/1:3,6:9:53.04:196,0,53 0/1:3,2:5:54.56:55,0,99 0/1:3,9:12:33.15:285,0,33 0/0:5,0:5:15.05:0,15,187 0/1:1,3:4:29.55:66,0,30 0/0:5,0:5:9.03:0,9,114 0/1:1,6:7:17.52:185,0,18 0/1:6,4:10:99:115,0,168 12 113398919 . G A 8960.82 . AC=16;AF=0.190;AN=84;BaseQRankSum=9.204;DP=1403;Dels=0.00;FS=3.777;HRun=1;HaplotypeScore=0.6406;InbreedingCoeff=0.3823;MQ=58.69;MQ0=0;MQRankSum=-0.050;QD=19.61;ReadPosRankSum=1.952 GT:AD:DP:GQ:PL 0/0:23,0:23:54.15:0,54,636 0/0:24,0:24:60.17:0,60,717 0/0:24,0:24:63.18:0,63,758 0/0:42,0:42:99:0,117,1484 0/1:16,12:28:99:332,0,494 1/1:0,24:24:63.19:799,63,0 1/1:0,26:26:66.21:855,66,0 1/1:0,23:23:63.20:803,63,0 0/0:35,0:35:96.26:0,96,1107 0/0:26,0:26:75.15:0,75,817 0/0:30,0:30:84.21:0,84,946 0/0:40,0:40:99:0,105,1208 0/0:26,0:26:69.20:0,69,825 0/0:19,0:19:57.16:0,57,646 0/1:49,53:102:99:1443,0,1281 1/1:0,23:23:69.21:831,69,0 0/0:28,0:28:81.21:0,81,931 0/0:33,0:33:90.26:0,90,1068 0/0:54,0:54:99:0,153,1695 0/0:62,0:62:99:0,165,1949 0/0:39,0:39:99:0,114,1279 0/0:33,0:33:96.25:0,96,1091 0/0:44,0:44:99:0,114,1455 0/0:28,0:28:72.23:0,72,927 0/0:28,0:28:72.21:0,72,903 0/0:16,0:16:45.13:0,45,532 0/0:25,0:25:69.19:0,69,808 0/0:33,0:33:93.25:0,93,1070 0/0:24,0:24:72.19:0,72,812 0/1:16,15:31:99:410,0,409 0/0:36,0:36:99:0,105,1223 0/0:61,0:61:99:0,150,1819 0/1:14,23:37:99:614,0,360 0/0:20,0:20:57.15:0,57,634 0/0:18,0:18:54.15:0,54,620 0/1:16,25:41:99:778,0,383 0/1:20,31:52:99:925,0,517 0/0:32,0:32:87.24:0,87,1003 0/1:21,25:46:99:773,0,495 0/0:30,0:30:81.22:0,81,940 0/0:13,0:13:39.07:0,39,419 0/1:11,13:24:99:397,0,330 12 113424845 . T G 2423.72 . AC=23;AF=0.274;AN=84;BaseQRankSum=-39.577;DP=5465;DS;Dels=0.00;FS=2877.526;HRun=3;HaplotypeScore=2.2466;InbreedingCoeff=-0.3734;MQ=59.22;MQ0=0;MQRankSum=-1.219;QD=0.88;ReadPosRankSum=-30.237 GT:AD:DP:GQ:PL 0/1:64,42:107:66.69:67,0,1799 0/1:59,38:97:99:142,0,1678 0/1:44,36:80:39.20:39,0,1296 0/1:118,121:240:99:113,0,3509 0/1:112,90:203:99:148,0,3404 0/0:121,102:224:99:0,161,3969 0/0:68,62:130:95.63:0,96,2038 0/0:99,76:175:64.59:0,65,3184 0/0:62,50:112:4.62:0,5,1772 0/1:54,39:94:56.60:57,0,1603 0/1:57,37:94:11.08:11,0,1766 0/1:51,33:85:53.02:53,0,1600 0/1:53,37:90:31.84:32,0,1525 0/1:54,36:90:59.50:60,0,1411 0/1:123,114:237:99:608,0,3279 0/1:39,35:75:2.40:2,0,1168 0/0:73,43:117:55.56:0,56,2208 0/0:67,37:104:99:0,162,2129 0/1:111,70:181:99:259,0,3109 0/0:123,81:205:99:0,180,3887 0/1:102,62:165:99:151,0,2863 0/0:69,42:111:36.41:0,36,1999 0/0:119,85:204:99:0,126,3830 0/0:116,76:192:99:0,159,3435 0/0:115,92:208:39.38:0,39,3333 0/0:91,69:160:99:0,205,2987 0/1:33,30:63:99:118,0,937 0/1:57,45:102:99:111,0,1748 0/1:57,35:92:99:105,0,1763 0/0:61,26:88:61.59:0,62,1768 0/1:41,37:78:99:194,0,1177 0/0:122,70:193:99:0,145,3631 0/0:66,44:110:41.52:0,42,1946 0/1:62,41:103:99:112,0,1941 0/0:63,44:107:33.73:0,34,1900 0/0:60,31:91:51.26:0,51,1893 0/1:98,60:158:22.36:22,0,2774 0/1:74,50:124:26.64:27,0,2150 0/0:57,23:80:42.09:0,42,1735 0/1:46,44:90:99:131,0,1263 0/1:58,40:98:36.89:37,0,1670 0/0:63,45:108:15.49:0,15,1971 12 113424893 . C G 18943.69 . 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G A 479.49 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.007;DP=2466;Dels=0.00;FS=2.122;HRun=0;HaplotypeScore=1.2345;InbreedingCoeff=-0.0120;MQ=59.35;MQ0=0;MQRankSum=-0.028;QD=12.62;ReadPosRankSum=-0.421 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,150,1920 0/0:49,0:49:99:0,135,1705 0/0:40,0:40:99:0,114,1443 0/0:76,0:76:99:0,208,2757 0/0:88,0:88:99:0,244,3180 0/0:71,0:71:99:0,184,2495 0/0:52,0:52:99:0,144,1922 0/0:58,0:58:99:0,150,2003 0/0:46,0:46:99:0,120,1532 0/0:53,0:53:99:0,144,1845 0/0:40,0:40:99:0,120,1456 0/0:50,0:50:99:0,138,1780 0/0:29,0:30:75.24:0,75,971 0/1:20,18:38:99:526,0,619 0/0:170,0:170:99:0,448,5764 0/0:43,0:43:99:0,126,1591 0/0:58,0:58:99:0,147,1883 0/0:37,0:37:99:0,105,1314 0/0:74,0:75:99:0,190,2398 0/0:100,0:100:99:0,262,3358 0/0:85,0:85:99:0,223,2828 0/0:50,0:50:99:0,126,1610 0/0:110,0:110:99:0,283,3835 0/0:52,1:53:99:0,115,1837 0/0:64,1:65:99:0,172,2281 0/0:43,0:43:99:0,114,1536 0/0:34,0:34:99:0,99,1273 0/0:54,0:54:99:0,153,1890 0/0:51,0:52:99:0,135,1771 0/0:53,0:53:99:0,138,1731 0/0:49,0:49:99:0,135,1707 0/0:80,0:80:99:0,199,2573 0/0:68,0:68:99:0,181,2311 0/0:46,0:46:99:0,132,1650 0/0:36,0:36:99:0,99,1274 0/0:64,0:64:99:0,175,2220 0/0:55,0:55:99:0,153,1945 0/0:58,0:58:99:0,169,2126 0/0:54,0:54:99:0,144,1828 0/0:37,0:37:99:0,105,1327 0/0:50,0:50:99:0,144,1807 0/0:40,0:40:99:0,111,1403 12 113537773 . C T 10186.68 . AC=20;AF=0.238;AN=84;BaseQRankSum=-12.346;DP=1848;Dels=0.00;FS=4.416;HRun=1;HaplotypeScore=1.1230;InbreedingCoeff=-0.0500;MQ=59.58;MQ0=0;MQRankSum=-0.539;QD=14.64;ReadPosRankSum=1.298 GT:AD:DP:GQ:PL 0/1:10,14:24:99:409,0,290 0/0:19,0:19:54.17:0,54,688 0/0:23,0:23:60.18:0,60,760 0/0:167,0:167:99:0,415,5650 0/0:133,1:134:99:0,316,4702 0/0:93,0:93:99:0,232,3184 0/0:87,0:87:99:0,214,2887 0/0:69,0:69:99:0,178,2427 0/1:11,10:21:99:294,0,332 0/0:23,0:23:60.19:0,60,765 0/1:11,9:20:99:251,0,347 0/1:11,14:25:99:419,0,316 0/1:5,11:16:99:279,0,122 0/0:16,0:16:42.13:0,42,517 0/0:81,0:81:99:0,208,2641 0/0:29,0:29:75.23:0,75,961 0/1:13,16:29:99:455,0,415 0/0:12,0:12:33.11:0,33,424 0/0:45,0:45:99:0,126,1586 0/0:47,0:47:99:0,120,1560 0/1:21,17:39:99:500,0,579 0/0:34,0:34:90.27:0,90,1133 0/1:79,84:163:99:2341,0,2313 0/1:34,32:67:99:944,0,983 0/1:49,41:90:99:1191,0,1302 0/0:81,0:81:99:0,205,2762 0/1:22,10:32:99:228,0,630 0/0:21,0:21:54.17:0,54,691 1/1:0,19:19:51.14:618,51,0 0/0:16,0:16:39.12:0,39,508 0/0:27,0:27:66.20:0,66,864 0/1:28,21:49:99:529,0,887 0/0:26,0:26:69.22:0,69,879 1/1:0,18:18:48.13:588,48,0 0/1:10,12:22:99:387,0,323 0/1:12,14:26:99:395,0,276 0/0:40,0:40:99:0,105,1357 0/0:23,0:23:57.18:0,57,748 0/0:20,0:20:57.18:0,57,730 0/1:14,7:21:99:177,0,441 0/0:19,0:19:54.17:0,54,696 0/1:9,6:15:99:180,0,235 12 113542098 . A G 1475.71 . AC=21;AF=0.250;AN=84;BaseQRankSum=5.922;DP=272;Dels=0.00;FS=6.911;HRun=1;HaplotypeScore=0.1556;InbreedingCoeff=0.2726;MQ=58.69;MQ0=0;MQRankSum=-0.239;QD=17.57;ReadPosRankSum=1.120 GT:AD:DP:GQ:PL 0/1:3,5:8:78.94:155,0,79 0/0:3,0:3:9.03:0,9,106 0/0:5,0:5:12.04:0,12,140 0/0:5,0:5:12.03:0,12,139 0/0:11,0:11:33.10:0,33,381 0/0:2,0:2:6.02:0,6,76 0/0:15,0:15:33.10:0,33,428 0/0:6,0:6:18.06:0,18,220 0/1:0,1:1:1.76:38,3,0 0/0:4,0:4:12.03:0,12,135 0/1:5,3:8:96.09:96,0,129 0/1:0,1:1:1.76:39,3,0 0/1:2,2:4:35.74:68,0,36 0/0:7,0:7:21.06:0,21,246 0/0:19,0:19:51.15:0,51,599 0/0:7,0:7:18.06:0,18,228 1/1:0,3:3:9.03:104,9,0 0/0:8,0:8:21.06:0,21,259 0/0:15,0:15:45.12:0,45,528 0/0:8,0:8:21.06:0,21,250 0/1:4,2:6:56.72:57,0,121 0/0:10,1:11:24.07:0,24,296 0/1:4,4:8:99:136,0,121 1/1:0,2:2:6.02:84,6,0 0/1:2,2:4:58.38:66,0,58 0/0:8,0:8:21.06:0,21,255 0/1:1,5:6:13.50:170,0,13 0/0:8,0:8:21.06:0,21,253 1/1:0,5:5:15.05:185,15,0 0/0:5,0:5:15.04:0,15,168 0/0:8,0:8:24.07:0,24,287 0/1:7,5:12:99:128,0,218 0/0:3,0:3:9.03:0,9,102 1/1:0,6:6:15.04:177,15,0 0/1:2,1:3:30.29:30,0,62 0/1:2,3:5:61.07:67,0,61 0/0:12,0:12:36.10:0,36,419 0/0:2,0:2:6.02:0,6,70 0/0:12,0:12:33.10:0,33,403 0/1:0,2:2:0.97:70,6,0 0/0:2,0:2:6.01:0,6,65 0/0:2,0:2:6.02:0,6,66 12 113565872 . G A 7227.10 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.955;DP=10363;DS;Dels=0.00;FS=2.463;HRun=1;HaplotypeScore=16.7418;InbreedingCoeff=-0.0244;MQ=59.37;MQ0=0;MQRankSum=-0.115;QD=14.51;ReadPosRankSum=4.487 GT:AD:DP:GQ:PL 0/0:250,0:250:99:0,668,7733 0/1:109,139:248:99:3734,0,2727 0/1:124,125:249:99:3493,0,3206 0/0:250,0:250:99:0,680,8270 0/0:243,0:243:99:0,695,8525 0/0:249,0:250:99:0,656,8068 0/0:247,0:248:99:0,671,8312 0/0:250,0:250:99:0,650,7969 0/0:233,0:233:99:0,614,7203 0/0:241,0:243:99:0,638,7546 0/0:250,0:250:99:0,659,7711 0/0:249,0:249:99:0,653,7687 0/0:219,0:219:99:0,563,6705 0/0:250,0:250:99:0,713,8077 0/0:250,0:250:99:0,692,8087 0/0:250,0:250:99:0,716,8242 0/0:250,0:250:99:0,668,7695 0/0:243,0:244:99:0,668,7759 0/0:250,0:250:99:0,653,7551 0/0:250,0:250:99:0,668,7827 0/0:247,1:250:99:0,604,7337 0/0:247,0:247:99:0,665,7587 0/0:250,0:250:99:0,689,8518 0/0:250,0:250:99:0,692,8494 0/0:247,0:248:99:0,662,8213 0/0:250,0:250:99:0,650,8014 0/0:227,0:227:99:0,629,7312 0/0:250,0:250:99:0,671,7757 0/0:233,0:234:99:0,617,7209 0/0:249,0:250:99:0,674,7788 0/0:250,0:250:99:0,677,7960 0/0:247,0:248:99:0,653,7618 0/0:248,0:250:99:0,659,7577 0/0:247,1:248:99:0,612,7495 0/0:250,0:250:99:0,674,7899 0/0:250,0:250:99:0,677,7846 0/0:249,0:250:99:0,662,7626 0/0:247,2:249:99:0,629,7736 0/0:249,1:250:99:0,668,7764 0/0:250,0:250:99:0,695,7958 0/0:237,0:237:99:0,644,7484 0/0:248,0:248:99:0,677,7851 12 113565933 . G A 15815.21 . AC=7;AF=0.083;AN=84;BaseQRankSum=-13.280;DP=7270;DS;Dels=0.00;FS=4.537;HRun=0;HaplotypeScore=10.1295;InbreedingCoeff=-0.0909;MQ=59.36;MQ0=1;MQRankSum=-0.410;QD=13.18;ReadPosRankSum=2.617 GT:AD:DP:GQ:PL 0/1:67,73:140:99:1985,0,1772 0/0:134,0:134:99:0,370,4284 0/0:137,0:137:99:0,364,4258 0/0:219,1:221:99:0,584,7619 0/0:231,0:231:99:0,665,8444 0/0:230,0:230:99:0,653,8184 0/0:213,0:213:99:0,596,7503 0/0:230,0:231:99:0,656,8213 0/0:143,0:143:99:0,391,4547 0/0:134,0:134:99:0,361,4159 0/0:124,0:124:99:0,346,4037 0/0:137,0:137:99:0,385,4452 0/0:115,0:115:99:0,313,3683 0/0:162,0:163:99:0,448,5324 0/0:229,0:229:99:0,602,6920 0/0:148,0:148:99:0,412,4864 0/1:83,86:169:99:2388,0,2259 0/0:154,0:155:99:0,427,4992 0/0:208,0:208:99:0,569,6637 0/0:218,0:219:99:0,611,7198 0/0:202,0:203:99:0,550,6396 0/0:205,0:206:99:0,553,6398 0/1:120,110:231:99:2954,0,3546 0/1:101,89:191:99:2170,0,3099 0/1:126,100:226:99:2591,0,3942 0/0:206,0:206:99:0,557,7016 0/1:56,65:121:99:1727,0,1575 0/0:167,1:168:99:0,425,5285 0/1:52,69:122:99:2001,0,1294 0/0:150,1:152:99:0,382,4778 0/0:141,0:141:99:0,388,4566 0/0:217,0:217:99:0,599,7021 0/0:207,0:207:99:0,565,6614 0/0:135,0:135:99:0,373,4345 0/0:163,0:163:99:0,442,5157 0/0:159,1:160:99:0,415,5152 0/0:179,1:182:99:0,484,5634 0/0:151,0:152:99:0,418,4802 0/0:142,0:142:99:0,382,4485 0/0:162,0:162:99:0,469,5438 0/0:141,0:141:99:0,397,4651 0/0:159,0:161:99:0,442,5201 12 113610349 . AC A 259.44 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.978;DP=1318;FS=1.532;HRun=3;HaplotypeScore=78.3348;InbreedingCoeff=-0.0121;MQ=59.06;MQ0=0;MQRankSum=-0.371;QD=11.79;ReadPosRankSum=1.346 GT:AD:DP:GQ:PL 0/0:32,0:32:90.29:0,90,1267 0/0:31,0:31:84.26:0,84,1177 0/0:27,0:27:72.22:0,72,1018 0/0:51,0:51:99:0,144,2031 0/0:51,0:51:99:0,151,2135 0/0:58,0:57:99:0,175,2506 0/0:33,0:32:93.31:0,93,1339 0/0:43,0:42:99:0,120,1707 0/0:33,0:33:87.26:0,87,1172 0/0:21,0:21:57.19:0,57,806 0/0:26,0:26:69.23:0,69,994 0/0:22,0:22:54.18:0,54,755 0/0:22,0:22:60.19:0,60,838 0/0:21,0:21:57.19:0,57,807 0/0:77,0:77:99:0,226,3125 0/0:33,0:33:87.28:0,87,1223 0/1:11,11:22:99:315,0,331 0/0:32,0:32:87.27:0,87,1220 0/0:37,0:37:99:0,99,1395 0/0:51,0:51:99:0,147,2065 0/0:46,0:46:99:0,120,1634 0/0:25,0:25:66.22:0,66,928 0/0:50,0:50:99:0,141,1931 0/0:18,0:17:51.13:0,51,712 0/0:36,0:35:99:0,105,1513 0/0:23,0:23:60.20:0,60,861 0/0:21,0:21:57.19:0,57,805 0/0:23,0:23:63.21:0,63,906 0/0:25,0:25:69.22:0,69,960 0/0:19,0:19:48.16:0,48,677 0/0:15,0:15:45.15:0,45,648 0/0:47,0:47:99:0,132,1850 0/0:30,0:30:84.24:0,84,1158 0/0:23,0:22:63.19:0,63,875 0/0:15,0:15:36.12:0,36,519 0/0:23,0:23:63.17:0,63,842 0/0:32,0:32:78.26:0,78,1122 0/0:23,0:23:60.16:0,60,840 0/0:26,0:26:72.21:0,72,949 0/0:26,0:26:78.26:0,78,1111 0/0:20,0:20:54.18:0,54,777 0/0:29,0:29:81.27:0,81,1139 12 113623241 . C G 29.56 . AC=3;AF=0.044;AN=68;BaseQRankSum=-1.896;DP=105;Dels=0.00;FS=5.053;HRun=0;HaplotypeScore=0.2652;InbreedingCoeff=0.0125;MQ=56.61;MQ0=0;MQRankSum=1.225;QD=2.69;ReadPosRankSum=-1.116 GT:AD:DP:GQ:PL 0/1:4,1:5:17.45:17,0,130 0/0:3,0:3:6.02:0,6,76 ./. 0/0:7,0:7:18.06:0,18,226 0/0:2,0:2:6.02:0,6,70 0/0:1,0:1:3.01:0,3,35 ./. 0/0:3,0:3:6:0,6,68 0/0:3,0:3:6.02:0,6,73 0/0:3,0:3:9.02:0,9,99 0/0:4,0:4:12.04:0,12,152 0/0:4,0:4:12.04:0,12,149 ./. 0/0:1,1:2:3.01:0,3,36 0/0:5,0:5:6.02:0,6,78 0/0:5,0:5:15.05:0,15,180 0/1:3,2:5:49.95:50,0,85 0/0:5,0:5:12.02:0,12,138 0/0:2,0:2:3.01:0,3,31 0/0:4,0:4:9.02:0,9,107 ./. 0/0:4,0:4:12.04:0,12,152 0/0:4,0:4:12.03:0,12,145 ./. 0/0:2,0:2:6.02:0,6,75 0/0:2,0:2:6.02:0,6,82 0/1:0,1:1:1.76:33,3,0 0/0:1,0:1:3.01:0,3,35 ./. 0/0:3,0:3:6.02:0,6,76 ./. 0/0:3,0:3:6.02:0,6,72 0/0:3,0:3:9.02:0,9,103 0/0:2,0:2:6.02:0,6,68 0/0:1,0:1:3:0,3,26 0/0:4,0:4:12.04:0,12,146 0/0:2,0:2:3.01:0,3,37 0/0:4,0:4:12.04:0,12,143 0/0:2,0:2:5.99:0,6,57 0/0:2,0:2:6:0,6,60 0/0:1,0:1:3.01:0,3,36 ./. 12 113728005 . C T 243.35 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.795;DP=810;Dels=0.00;FS=2.795;HRun=1;HaplotypeScore=0.3389;InbreedingCoeff=-0.0124;MQ=58.85;MQ0=0;MQRankSum=-0.437;QD=16.22;ReadPosRankSum=-2.451 GT:AD:DP:GQ:PL 0/0:18,0:18:51.16:0,51,628 0/0:18,0:18:45.15:0,45,594 0/0:13,0:13:39.13:0,39,499 0/0:19,0:19:48.16:0,48,656 0/0:13,0:13:33.11:0,33,457 0/0:11,0:11:27.09:0,27,377 0/0:13,0:13:27.09:0,27,377 0/0:15,0:15:39.12:0,39,519 0/0:12,0:12:33.10:0,33,416 0/0:12,0:12:36.11:0,36,450 0/0:16,0:16:45.14:0,45,565 0/0:18,0:18:54.15:0,54,663 0/0:11,0:11:33.09:0,33,399 0/0:14,0:14:33.11:0,33,432 0/0:61,0:61:99:0,153,1935 0/0:18,0:18:54.17:0,54,679 0/0:34,0:34:96.31:0,96,1225 0/0:18,0:18:48.15:0,48,615 0/0:28,0:28:69.20:0,69,863 0/0:38,0:38:96.30:0,96,1243 0/0:21,0:22:60.18:0,60,746 0/0:20,0:20:57.18:0,57,727 0/0:19,0:19:48.16:0,48,646 0/0:9,0:9:27.09:0,27,364 0/0:15,0:15:39.12:0,39,524 0/0:16,0:16:42.14:0,42,579 0/0:8,0:8:18.06:0,18,243 0/0:12,0:12:30.09:0,30,380 0/0:15,0:15:45.14:0,45,569 0/0:15,0:15:45.13:0,45,562 0/0:24,0:24:51.15:0,51,658 0/0:44,0:45:99:0,120,1511 0/0:31,0:31:78.22:0,78,1011 0/0:13,0:13:33.11:0,33,427 0/0:15,0:15:36.11:0,36,460 0/0:22,0:22:57.18:0,57,746 0/0:29,0:29:69.22:0,69,881 0/0:13,0:13:39.12:0,39,480 0/0:17,0:17:51.16:0,51,635 0/0:18,0:18:48.13:0,48,601 0/1:5,10:15:99:290,0,152 0/0:17,0:17:45.14:0,45,580 12 113729711 . C T 651.10 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.546;DP=3454;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.8508;InbreedingCoeff=-0.0120;MQ=59.11;MQ0=0;MQRankSum=0.693;QD=12.77;ReadPosRankSum=-1.122 GT:AD:DP:GQ:PL 0/0:66,0:66:99:0,193,2374 0/0:64,0:64:99:0,184,2266 0/0:65,0:65:99:0,187,2256 0/0:136,0:136:99:0,388,5122 0/0:109,0:109:99:0,310,4108 0/0:108,0:108:99:0,316,4194 0/0:85,0:85:99:0,241,3231 0/0:108,0:109:99:0,319,4213 0/0:69,0:69:99:0,199,2496 0/0:54,1:55:99:0,120,1864 0/0:69,0:69:99:0,196,2444 0/0:47,0:47:99:0,138,1691 0/0:61,0:61:99:0,174,2114 0/0:56,0:56:99:0,153,1908 0/0:210,0:210:99:0,578,7105 0/0:85,0:85:99:0,241,2914 0/0:77,0:77:99:0,226,2804 0/0:42,0:42:99:0,123,1488 0/0:123,0:124:99:0,346,4275 0/0:134,0:134:99:0,373,4585 0/0:113,0:113:99:0,304,3753 0/0:68,0:68:99:0,196,2323 0/0:126,0:126:99:0,367,4921 0/0:87,0:87:99:0,235,3090 0/0:99,0:99:99:0,280,3720 0/0:76,0:76:99:0,223,2922 0/0:60,0:60:99:0,159,1960 0/1:25,26:51:99:697,0,766 0/0:64,0:64:99:0,184,2279 0/0:57,0:57:99:0,162,1980 0/0:73,0:73:99:0,214,2681 0/0:116,1:117:99:0,296,3872 0/0:93,0:93:99:0,268,3231 0/0:51,0:51:99:0,144,1758 0/0:51,0:51:99:0,153,1887 0/0:61,0:61:99:0,172,2134 0/0:113,0:114:99:0,316,3881 0/0:66,0:67:99:0,187,2283 0/0:64,0:64:99:0,181,2206 0/0:68,0:68:99:0,199,2447 0/0:62,0:62:99:0,178,2163 0/0:61,0:61:99:0,181,2240 12 113733830 . C T 1768.85 . AC=6;AF=0.071;AN=84;BaseQRankSum=-1.887;DP=841;Dels=0.00;FS=9.700;HRun=0;HaplotypeScore=0.7210;InbreedingCoeff=-0.0783;MQ=59.23;MQ0=0;MQRankSum=1.117;QD=16.69;ReadPosRankSum=1.662 GT:AD:DP:GQ:PL 0/1:6,9:15:99:290,0,142 0/0:16,0:16:45.14:0,45,569 0/0:13,0:13:36.08:0,36,421 0/0:65,0:65:99:0,187,2407 0/0:54,0:55:99:0,159,2048 0/0:37,0:37:99:0,102,1290 0/0:37,0:37:99:0,108,1379 0/0:31,0:31:78.23:0,78,994 0/0:13,0:13:39.11:0,39,453 0/0:18,0:19:45.13:0,45,547 0/0:7,0:7:21.07:0,21,261 0/0:15,0:15:45.14:0,45,549 0/0:16,0:16:48.14:0,48,580 0/0:16,0:16:48.14:0,48,587 0/0:15,0:15:42.12:0,42,509 0/0:16,1:17:26.46:0,26,527 0/1:8,6:15:99:178,0,235 0/0:12,0:12:36.10:0,36,416 0/0:18,0:18:45.14:0,45,552 0/0:14,0:14:36.11:0,36,448 0/0:23,0:23:60.16:0,60,713 0/0:13,0:13:36.11:0,36,443 0/0:47,0:47:99:0,138,1779 0/1:14,17:31:99:530,0,420 0/1:9,16:26:99:529,0,210 0/0:39,0:39:99:0,102,1289 0/1:5,9:14:99:285,0,141 0/0:14,0:14:36.11:0,36,446 0/1:3,2:5:62.11:62,0,89 0/0:10,0:10:24.08:0,24,307 0/0:12,0:12:36.11:0,36,447 0/0:19,0:19:45.13:0,45,552 0/0:17,0:17:45.10:0,45,507 0/0:11,0:11:33.10:0,33,409 0/0:10,0:10:30.09:0,30,371 0/0:16,0:16:48.15:0,48,590 0/0:22,0:23:60.19:0,60,756 0/0:13,0:13:33.10:0,33,407 0/0:14,0:14:39.12:0,39,482 0/0:10,0:10:27.08:0,27,334 0/0:13,1:14:10.47:0,10,427 0/0:14,0:14:39.10:0,39,482 12 113737630 . G A 4011.32 . AC=6;AF=0.071;AN=84;BaseQRankSum=6.987;DP=2459;Dels=0.00;FS=1.890;HRun=1;HaplotypeScore=1.0535;InbreedingCoeff=-0.0769;MQ=58.87;MQ0=0;MQRankSum=1.840;QD=12.54;ReadPosRankSum=-0.952 GT:AD:DP:GQ:PL 0/1:27,35:62:99:1023,0,692 0/0:48,0:48:99:0,141,1564 0/0:46,0:46:99:0,135,1554 0/0:110,0:110:99:0,313,3797 0/0:96,0:96:99:0,280,3395 0/0:79,0:79:99:0,208,2591 0/0:52,0:52:99:0,150,1798 0/0:79,0:79:99:0,205,2525 0/0:50,0:50:99:0,141,1599 0/0:47,0:47:99:0,126,1472 0/0:52,0:53:99:0,150,1747 0/0:40,0:40:99:0,117,1364 0/0:50,0:50:99:0,138,1607 0/0:45,0:45:99:0,129,1469 0/0:169,0:169:99:0,460,5361 0/0:31,0:31:84.21:0,84,971 0/1:35,25:60:99:632,0,846 0/0:50,0:50:99:0,147,1686 0/0:67,0:67:99:0,192,2185 0/0:72,0:72:99:0,202,2274 0/0:56,0:56:99:0,156,1771 0/0:32,0:32:93.26:0,93,1075 0/0:108,0:108:99:0,310,3751 0/1:29,17:46:99:452,0,870 0/1:36,21:57:99:627,0,1121 0/0:51,0:51:99:0,141,1733 0/1:27,18:45:99:512,0,746 0/0:47,0:47:99:0,132,1512 0/1:25,25:50:99:765,0,654 0/0:45,0:45:99:0,129,1457 0/0:37,0:37:99:0,99,1099 0/0:86,0:86:99:0,235,2697 0/0:45,0:45:99:0,126,1384 0/0:57,0:57:99:0,156,1816 0/0:33,0:33:96.27:0,96,1110 0/0:49,0:49:99:0,132,1592 0/0:61,0:61:99:0,165,1892 0/0:45,0:45:99:0,126,1441 0/0:54,0:54:99:0,156,1749 0/0:51,0:51:99:0,147,1680 0/0:38,2:40:44.19:0,44,1164 0/0:58,0:58:99:0,153,1764 12 113737663 . G A 11.05 . AC=2;AF=0.024;AN=84;BaseQRankSum=-13.641;DP=2520;Dels=0.00;FS=257.789;HRun=2;HaplotypeScore=0.9029;InbreedingCoeff=-0.0250;MQ=58.64;MQ0=0;MQRankSum=0.542;QD=0.12;ReadPosRankSum=-10.234 GT:AD:DP:GQ:PL 0/0:52,7:59:75.12:0,75,1437 0/0:44,8:52:58.53:0,59,1008 0/0:36,7:43:84.20:0,84,1011 0/0:124,17:142:99:0,264,3557 0/0:112,15:127:99:0,186,3048 0/0:70,5:75:99:0,162,2047 0/0:58,2:60:99:0,132,1697 0/0:80,8:88:99:0,178,2267 0/0:42,7:49:87.18:0,87,1021 0/0:33,5:38:35.03:0,35,1020 0/0:34,4:38:69.15:0,69,808 0/0:34,7:41:37.80:0,38,775 0/0:37,4:41:87.22:0,87,1027 0/1:35,13:48:40.11:40,0,769 0/0:132,30:162:99:0,141,3639 0/0:39,11:50:45.56:0,46,823 0/0:43,9:52:76.45:0,76,1166 0/0:45,6:51:99:0,99,1181 0/0:49,2:51:99:0,114,1419 0/0:81,5:86:99:0,199,2372 0/0:54,6:61:98.42:0,98,1539 0/0:33,4:37:84.21:0,84,981 0/0:106,10:116:99:0,221,3356 0/0:45,7:52:82.57:0,83,1482 0/0:60,6:66:99:0,113,1679 0/0:54,4:58:92.60:0,93,1391 0/0:38,5:43:93.27:0,93,1139 0/0:31,9:40:26.09:0,26,858 0/0:39,3:42:78.48:0,78,1122 0/0:42,11:53:25.23:0,25,1027 0/0:30,8:38:13.25:0,13,830 0/0:72,2:74:99:0,153,2229 0/0:44,5:49:84.53:0,85,1180 0/0:44,11:55:74.70:0,75,1208 0/0:40,4:44:93.23:0,93,1109 0/0:35,7:42:54.70:0,55,942 0/0:50,13:63:71.80:0,72,1562 0/0:36,9:45:63.63:0,64,1055 0/0:42,12:54:77.27:0,77,1181 0/0:47,4:51:92.61:0,93,1112 0/0:36,1:37:75.17:0,75,891 0/1:37,10:47:32.85:33,0,1061 12 113758166 . G A 1165.62 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.036;DP=6713;DS;Dels=0.00;FS=2.168;HRun=0;HaplotypeScore=4.4391;InbreedingCoeff=-0.0120;MQ=59.35;MQ0=0;MQRankSum=0.561;QD=12.02;ReadPosRankSum=0.539 GT:AD:DP:GQ:PL 0/0:132,0:132:99:0,364,4125 0/0:115,0:115:99:0,319,3533 0/0:116,0:117:99:0,337,3770 0/0:248,2:250:99:0,648,8536 0/0:250,0:250:99:0,719,8838 0/0:250,0:250:99:0,695,8554 0/0:243,1:244:99:0,635,8201 0/0:250,0:250:99:0,698,8602 0/0:117,0:117:99:0,331,3696 0/0:104,0:104:99:0,286,3192 0/0:112,0:112:99:0,307,3496 0/0:105,0:105:99:0,307,3366 0/0:89,0:90:99:0,244,2758 0/0:111,0:111:99:0,313,3537 0/0:249,0:250:99:0,689,7576 0/0:126,0:126:99:0,346,3852 0/1:53,44:97:99:1212,0,1406 0/0:109,0:109:99:0,298,3349 0/0:224,0:224:99:0,632,7084 0/0:248,0:250:99:0,677,7671 0/0:206,0:206:99:0,587,6566 0/0:153,0:155:99:0,433,4903 0/0:249,0:250:99:0,704,8685 0/0:209,0:210:99:0,587,7269 0/0:248,0:250:99:0,695,8460 0/0:212,0:212:99:0,602,7350 0/0:85,0:85:99:0,238,2681 0/0:112,0:112:99:0,319,3519 0/0:99,0:99:99:0,274,3072 0/0:118,0:121:99:0,343,3784 0/0:95,0:96:99:0,274,3036 0/0:206,0:206:99:0,550,6290 0/0:186,0:186:99:0,526,5928 0/0:132,0:132:99:0,358,3966 0/0:126,0:127:99:0,346,3877 0/0:128,0:128:99:0,355,3938 0/0:250,0:250:99:0,674,7490 0/0:115,0:115:99:0,313,3489 0/0:126,0:126:99:0,352,3893 0/0:117,1:118:99:0,291,3506 0/0:94,0:96:99:0,259,2879 0/0:128,0:129:99:0,352,3960 12 113837452 . T G 205.66 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.425;DP=423;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2485;InbreedingCoeff=-0.0477;MQ=59.20;MQ0=1;MQRankSum=0.895;QD=6.43;ReadPosRankSum=0.197 GT:AD:DP:GQ:PL 0/0:14,0:14:36.11:0,36,453 0/0:3,0:3:9.01:0,9,96 0/0:3,0:3:9.02:0,9,99 0/0:17,0:17:51.16:0,51,634 0/0:27,0:27:66.21:0,66,862 0/1:4,3:7:70.37:70,0,96 0/0:9,0:9:27.08:0,27,343 0/1:13,3:16:76.99:77,0,377 0/0:6,0:6:18.05:0,18,216 0/0:10,0:10:27.08:0,27,332 0/0:14,0:14:36.10:0,36,435 0/0:11,0:11:33.09:0,33,387 0/0:5,0:5:15.05:0,15,186 0/1:4,5:9:99:134,0,100 0/0:15,0:15:39.12:0,39,470 0/0:6,0:6:18.06:0,18,221 0/0:7,0:7:21.06:0,21,252 0/0:14,0:14:42.12:0,42,499 0/0:15,0:15:42.13:0,42,526 0/0:13,0:13:33.08:0,33,398 0/0:18,0:18:48.15:0,48,589 0/0:9,0:9:27.08:0,27,327 0/0:18,0:18:48.15:0,48,598 0/0:9,0:9:24.08:0,24,311 0/0:13,0:13:36.11:0,36,455 0/0:12,0:12:33.11:0,33,422 0/0:5,0:5:15.05:0,15,180 0/0:6,0:6:15.05:0,15,188 0/0:6,0:6:18.05:0,18,206 0/0:3,0:3:6.02:0,6,75 0/0:4,0:4:12.04:0,12,145 0/0:12,0:12:33.10:0,33,405 0/0:13,0:13:39.11:0,39,458 0/0:5,0:5:15.02:0,15,163 0/0:11,0:11:33.10:0,33,399 0/0:9,0:9:27.08:0,27,328 0/0:5,1:7:9.01:0,9,98 0/0:7,0:7:18.06:0,18,232 0/0:8,0:8:21.07:0,21,257 0/0:11,0:11:30.08:0,30,354 0/0:7,0:7:18.05:0,18,221 0/0:9,0:9:27.08:0,27,325 12 114282496 . C T 6479.04 . AC=31;AF=0.369;AN=84;BaseQRankSum=1.181;DP=725;Dels=0.00;FS=2.204;HRun=0;HaplotypeScore=0.6157;InbreedingCoeff=-0.0299;MQ=58.19;MQ0=0;MQRankSum=-0.239;QD=14.63;ReadPosRankSum=-1.194 GT:AD:DP:GQ:PL 0/1:12,13:25:99:392,0,296 1/1:0,14:14:39.12:471,39,0 0/1:0,2:2:0.97:76,6,0 1/1:0,24:24:72.22:874,72,0 0/1:18,12:30:99:319,0,534 0/0:24,0:24:69.21:0,69,876 0/0:13,0:13:36.11:0,36,461 0/1:10,3:13:72.20:72,0,348 0/1:7,8:15:99:253,0,188 0/0:24,0:24:63.18:0,63,760 0/1:8,3:11:82.48:82,0,220 0/1:13,10:23:99:277,0,392 1/1:0,5:6:9.03:113,9,0 0/0:14,0:14:42.11:0,42,493 0/1:15,11:26:99:312,0,443 0/1:20,5:25:99:104,0,613 0/0:12,0:12:30.09:0,30,370 0/0:14,0:14:39.11:0,39,441 0/0:14,0:14:36.07:0,36,387 0/0:24,0:24:72.18:0,72,827 1/1:0,20:20:51.16:630,51,0 0/1:14,7:21:99:159,0,386 0/1:13,13:26:99:308,0,395 0/0:11,0:11:27.08:0,27,340 0/1:11,10:22:99:287,0,312 0/1:10,9:19:99:237,0,317 0/1:7,5:12:99:149,0,207 0/0:21,0:21:54.13:0,54,610 0/1:2,8:10:50.63:203,0,51 0/1:6,7:13:99:220,0,172 0/0:14,0:14:42.13:0,42,511 0/1:7,10:17:99:321,0,197 0/1:10,4:14:81.14:81,0,249 1/1:0,7:7:21.06:257,21,0 0/1:7,6:13:99:159,0,183 0/1:17,4:21:90.98:91,0,499 0/0:17,0:17:30.09:0,30,355 0/0:19,0:19:51.13:0,51,610 0/1:12,2:14:31.01:31,0,364 0/0:19,0:19:54.13:0,54,634 0/0:25,0:25:69.19:0,69,828 0/0:17,0:17:45.14:0,45,549 12 114374887 . T C 4188.67 . AC=4;AF=0.048;AN=84;BaseQRankSum=-4.659;DP=4594;DS;Dels=0.00;FS=10.848;HRun=0;HaplotypeScore=2.3374;InbreedingCoeff=-0.0500;MQ=59.44;MQ0=1;MQRankSum=0.885;QD=12.18;ReadPosRankSum=-0.939 GT:AD:DP:GQ:PL 0/0:78,0:79:99:0,220,2605 0/0:86,0:86:99:0,235,2809 0/0:74,0:75:99:0,211,2514 0/0:223,0:226:99:0,569,7060 0/0:188,0:189:99:0,518,6343 0/0:143,0:143:99:0,385,4813 0/0:156,1:158:99:0,418,5200 0/0:144,0:144:99:0,388,4661 0/0:68,0:68:99:0,187,2238 0/1:43,33:76:99:877,0,1203 0/0:83,0:83:99:0,232,2768 0/0:77,0:77:99:0,205,2501 0/0:69,1:70:99:0,160,2289 0/0:80,0:81:99:0,226,2654 0/0:239,0:240:99:0,641,7686 0/1:32,35:67:99:977,0,850 0/0:67,0:67:99:0,187,2249 0/0:90,0:90:99:0,253,2999 0/0:136,0:140:99:0,373,4522 0/0:148,0:149:99:0,406,4899 0/0:133,0:135:99:0,358,4309 0/1:64,48:112:99:1257,0,1706 0/0:227,1:229:99:0,623,7614 0/0:137,0:138:99:0,382,4666 0/0:172,2:174:99:0,407,5724 0/0:144,0:144:99:0,379,4729 0/0:65,0:65:99:0,178,2160 0/0:67,0:67:99:0,178,2159 0/0:83,1:84:99:0,223,2678 0/0:87,0:87:99:0,238,2863 0/0:63,0:63:99:0,184,2131 0/0:139,0:139:99:0,376,4585 0/0:100,0:100:99:0,271,3230 0/0:72,0:72:99:0,202,2439 0/0:72,0:73:99:0,196,2375 0/0:78,0:78:99:0,214,2574 0/0:140,0:141:99:0,382,4600 0/1:44,45:89:99:1078,0,1204 0/0:87,0:87:99:0,247,2925 0/0:66,0:66:99:0,190,2273 0/0:75,0:75:99:0,208,2481 0/0:68,0:68:99:0,190,2279 12 114383651 . C T 1021.06 . AC=4;AF=0.048;AN=84;BaseQRankSum=-7.516;DP=1293;Dels=0.00;FS=1.464;HRun=2;HaplotypeScore=1.4000;InbreedingCoeff=-0.0500;MQ=59.26;MQ0=0;MQRankSum=0.895;QD=11.74;ReadPosRankSum=-1.417 GT:AD:DP:GQ:PL 0/0:29,0:29:78.25:0,78,1011 0/0:32,0:32:87.28:0,87,1121 0/0:16,0:16:45.14:0,45,560 0/0:55,0:55:99:0,160,2137 0/0:47,0:47:99:0,135,1831 0/0:38,0:38:99:0,102,1381 0/0:18,0:18:54.17:0,54,712 0/0:33,0:33:90.30:0,90,1227 0/0:39,0:39:99:0,105,1354 0/1:13,7:20:99:191,0,400 0/0:16,0:16:45.13:0,45,565 0/0:38,0:38:99:0,114,1413 0/0:17,0:17:45.14:0,45,574 0/0:19,0:19:54.17:0,54,688 0/0:90,0:91:99:0,211,2767 0/1:9,13:22:99:407,0,271 0/0:20,0:20:54.17:0,54,692 0/0:25,0:25:69.22:0,69,887 0/0:34,0:35:87.24:0,87,1082 0/0:46,0:46:99:0,126,1636 0/0:45,0:45:99:0,120,1531 0/1:8,5:13:99:110,0,254 0/0:50,0:50:99:0,132,1784 0/0:33,0:33:87.27:0,87,1173 0/0:35,0:35:96.31:0,96,1272 0/0:41,0:41:99:0,114,1528 0/0:11,0:12:33.11:0,33,426 0/0:22,0:22:63.17:0,63,790 0/0:24,0:24:57.18:0,57,736 0/0:30,0:30:78.24:0,78,992 0/0:23,0:23:69.22:0,69,878 0/0:33,0:33:93.29:0,93,1178 0/0:44,0:44:99:0,108,1418 0/0:20,0:20:57.18:0,57,719 0/0:33,0:33:96.30:0,96,1218 0/0:23,0:23:66.21:0,66,843 0/0:30,0:30:72.23:0,72,947 0/1:17,14:32:99:400,0,450 0/0:30,0:30:81.24:0,81,1020 0/0:23,0:23:69.22:0,69,869 0/0:14,0:14:42.13:0,42,515 0/0:27,0:27:72.22:0,72,932 12 114383659 . C T 2200.26 . AC=6;AF=0.071;AN=84;BaseQRankSum=-5.238;DP=1343;Dels=0.00;FS=0.434;HRun=0;HaplotypeScore=1.4689;InbreedingCoeff=-0.0769;MQ=59.31;MQ0=0;MQRankSum=-0.302;QD=11.52;ReadPosRankSum=-0.063 GT:AD:DP:GQ:PL 0/1:14,15:29:99:444,0,335 0/1:25,12:37:99:263,0,704 0/0:14,0:14:42.12:0,42,499 0/0:67,0:67:99:0,184,2364 0/0:48,0:48:99:0,138,1841 0/0:39,0:39:93.30:0,93,1243 0/0:18,0:18:48.15:0,48,613 0/1:20,14:34:99:366,0,610 0/0:36,0:36:96.25:0,96,1125 0/0:14,0:14:42.10:0,42,480 0/0:18,0:18:48.15:0,48,589 0/0:39,0:39:99:0,114,1378 0/1:10,8:18:99:204,0,246 0/0:18,0:18:51.15:0,51,622 0/0:98,0:100:99:0,244,3030 0/0:20,0:20:60.18:0,60,730 0/0:21,0:21:54.16:0,54,651 0/0:25,0:25:72.22:0,72,887 0/0:36,0:36:87.24:0,87,1054 0/0:46,0:46:99:0,126,1561 0/0:47,0:48:99:0,120,1468 0/0:13,0:13:39.12:0,39,464 0/0:53,0:53:99:0,141,1845 0/0:37,0:37:90.30:0,90,1216 0/0:33,0:33:93.26:0,93,1195 0/0:43,0:43:99:0,108,1416 0/0:15,0:15:39.12:0,39,476 0/0:18,0:18:51.15:0,51,618 0/0:25,0:25:66.19:0,66,811 0/1:22,12:34:99:304,0,498 0/0:26,0:26:75.22:0,75,927 0/0:33,0:33:90.26:0,90,1094 0/1:11,28:39:99:725,0,239 0/0:22,0:22:57.16:0,57,684 0/0:37,0:37:99:0,99,1172 0/0:26,0:26:66.18:0,66,785 0/0:37,0:37:84.25:0,84,1047 0/0:35,0:35:84.23:0,84,1006 0/0:29,0:29:75.19:0,75,886 0/0:21,0:21:63.18:0,63,765 0/0:16,0:16:48.14:0,48,576 0/0:26,0:26:69.19:0,69,853 12 114386639 . A G 1258.83 . AC=4;AF=0.048;AN=84;BaseQRankSum=-9.179;DP=1877;Dels=0.00;FS=10.454;HRun=0;HaplotypeScore=2.4112;InbreedingCoeff=-0.0500;MQ=59.22;MQ0=0;MQRankSum=0.751;QD=9.99;ReadPosRankSum=0.856 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,120,1465 0/0:32,0:32:87.27:0,87,1055 0/0:26,0:27:72.22:0,72,887 0/0:71,0:71:99:0,202,2412 0/0:86,0:86:99:0,244,2981 0/0:48,0:48:99:0,132,1656 0/0:43,0:43:99:0,126,1537 0/0:51,0:51:99:0,147,1769 0/0:43,0:43:99:0,120,1463 0/1:19,9:28:99:211,0,569 0/0:33,0:33:93.27:0,93,1119 0/0:32,0:32:87.26:0,87,1047 0/0:17,0:17:51.15:0,51,607 0/0:38,0:38:99:0,111,1317 0/0:115,0:116:99:0,316,3773 0/1:15,12:27:99:320,0,450 0/0:32,1:33:96.30:0,96,1181 0/0:48,0:48:99:0,144,1713 0/0:58,0:58:99:0,162,1962 0/0:71,1:72:99:0,196,2349 0/0:56,0:56:99:0,153,1844 0/1:25,21:46:99:513,0,735 0/0:77,0:77:99:0,223,2642 0/0:56,0:56:99:0,159,1954 0/0:58,0:58:99:0,150,1841 0/0:43,0:43:99:0,120,1457 0/0:32,0:32:87.27:0,87,1064 0/0:35,0:35:93.29:0,93,1159 0/0:26,0:26:75.23:0,75,911 0/0:36,0:36:99:0,102,1232 0/0:34,1:35:68.87:0,69,1154 0/0:52,0:52:99:0,138,1658 0/0:47,0:47:99:0,135,1620 0/0:28,0:28:84.25:0,84,1005 0/0:34,0:34:99:0,99,1178 0/0:33,0:33:96.28:0,96,1146 0/0:60,0:60:99:0,162,1960 0/1:12,13:25:99:302,0,360 0/0:38,0:38:99:0,114,1371 0/0:37,0:37:99:0,108,1290 0/0:37,0:37:99:0,105,1253 0/0:41,0:41:99:0,108,1294 12 114392953 . G A 2214.57 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.805;DP=4137;DS;Dels=0.00;FS=13.811;HRun=0;HaplotypeScore=2.4471;InbreedingCoeff=-0.0244;MQ=59.27;MQ0=0;MQRankSum=1.041;QD=14.96;ReadPosRankSum=-0.793 GT:AD:DP:GQ:PL 0/0:86,0:86:99:0,226,2883 0/0:66,0:66:99:0,166,2102 0/0:59,0:59:99:0,147,1867 0/0:250,0:250:99:0,638,8404 0/0:246,0:246:99:0,605,8090 0/0:143,0:143:99:0,364,4762 0/0:158,0:158:99:0,418,5469 0/0:147,0:148:99:0,364,4834 0/1:30,43:73:99:1206,0,793 0/0:56,0:56:99:0,144,1807 0/1:34,41:75:99:1071,0,1021 0/0:67,0:67:99:0,181,2252 0/0:57,0:57:99:0,150,1893 0/0:66,0:66:99:0,178,2208 0/0:218,0:219:99:0,536,6724 0/0:66,0:66:99:0,175,2207 0/0:86,0:87:99:0,232,2853 0/0:77,0:77:99:0,208,2625 0/0:106,0:106:99:0,262,3286 0/0:101,0:101:99:0,250,3245 0/0:92,0:92:99:0,238,2945 0/0:58,0:58:99:0,147,1816 0/0:250,0:250:99:0,629,8333 0/0:138,0:138:99:0,367,4943 0/0:162,0:162:99:0,397,5287 0/0:136,0:136:99:0,343,4527 0/0:62,0:63:99:0,168,2116 0/0:62,0:62:99:0,159,2006 0/0:63,0:63:99:0,162,2035 0/0:67,0:67:99:0,178,2212 0/0:71,0:71:99:0,196,2466 0/0:91,0:91:99:0,229,2920 0/0:59,0:59:99:0,162,2026 0/0:71,0:71:99:0,187,2352 0/0:62,0:62:99:0,156,1934 0/0:71,0:71:99:0,184,2275 0/0:68,0:68:99:0,183,2204 0/0:65,0:65:99:0,181,2252 0/0:60,0:60:99:0,162,2013 0/0:72,0:72:99:0,184,2346 0/0:69,0:69:99:0,184,2303 0/0:81,0:81:99:0,223,2802 12 114392983 . T G 317.53 . AC=10;AF=0.119;AN=84;BaseQRankSum=-32.498;DP=3679;DS;Dels=0.00;FS=3200.000;HRun=2;HaplotypeScore=2.5078;InbreedingCoeff=-0.1570;MQ=58.82;MQ0=0;MQRankSum=0.350;QD=0.51;ReadPosRankSum=-27.886 GT:AD:DP:GQ:PL 0/1:49,17:66:5.81:6,0,1482 0/0:39,15:54:58.16:0,58,1297 0/0:41,15:57:9.66:0,10,1199 0/0:157,55:212:34.40:0,34,4915 0/0:159,61:220:82.99:0,83,5210 0/0:100,43:144:99:0,100,3219 0/0:104,46:150:87.48:0,87,3328 0/0:95,34:131:99:0,134,3087 0/1:44,16:60:57.58:58,0,1321 0/0:42,10:52:67.15:0,67,1357 0/0:46,19:65:13.53:0,14,1290 0/0:43,17:61:16.93:0,17,1339 0/0:40,14:54:36.99:0,37,1175 0/0:41,16:57:12.37:0,12,1311 0/0:124,55:179:99:0,169,3734 0/0:43,12:55:25.72:0,26,1415 0/0:49,15:65:49.81:0,50,1584 0/1:52,21:73:11.93:12,0,1587 0/0:58,31:89:2.66:1,0,1774 0/0:65,33:99:34.73:0,35,1867 0/0:60,24:84:12.52:0,13,1797 0/0:31,13:44:45.98:0,46,1030 0/0:140,66:206:86.51:0,87,4430 0/0:90,40:131:99:0,125,3006 0/0:110,61:171:12.25:0,12,3511 0/0:80,36:116:99:0,125,2572 0/1:38,19:59:99:135,0,1158 0/0:51,7:58:75.66:0,76,1728 0/0:41,19:60:1.22:0,1,1171 0/1:33,23:56:50.07:50,0,1038 0/1:47,22:70:17.95:18,0,1474 0/0:54,31:85:82.76:0,83,1685 0/1:34,15:49:15.89:16,0,988 0/0:48,13:61:91.65:0,92,1642 0/0:45,11:56:81.57:0,82,1420 0/1:51,17:69:15.40:15,0,1551 0/1:39,16:55:46.66:47,0,1179 0/0:47,13:60:13.90:0,14,1448 0/0:40,13:54:1.90:0,2,1214 0/0:45,24:69:34.14:0,34,1338 0/1:43,21:64:86.54:87,0,1240 0/0:40,18:58:31.21:0,31,1312 12 114395651 . T C 5837.39 . AC=4;AF=0.048;AN=84;BaseQRankSum=1.787;DP=5696;DS;Dels=0.00;FS=1.144;HRun=3;HaplotypeScore=3.4496;InbreedingCoeff=-0.0500;MQ=59.27;MQ0=0;MQRankSum=-1.149;QD=13.93;ReadPosRankSum=-1.093 GT:AD:DP:GQ:PL 0/0:112,0:113:99:0,301,3812 0/0:105,0:106:99:0,277,3504 0/0:103,0:103:99:0,277,3495 0/0:242,1:243:99:0,644,8234 0/0:241,0:241:99:0,647,8444 0/0:178,0:178:99:0,476,6268 0/0:157,0:157:99:0,427,5576 0/0:155,0:156:99:0,421,5497 0/0:93,1:94:99:0,265,3306 0/1:50,36:86:99:1072,0,1484 0/0:98,0:98:99:0,274,3427 0/0:92,0:92:99:0,271,3344 0/0:83,0:83:99:0,229,2860 0/0:87,0:88:99:0,241,3011 0/0:249,1:250:99:0,683,8565 0/1:52,57:109:99:1677,0,1475 0/0:100,0:100:99:0,274,3453 0/0:99,1:100:99:0,271,3380 0/0:212,0:213:99:0,566,7083 0/0:228,0:229:99:0,602,7623 0/0:191,2:193:99:0,536,6678 0/1:53,50:103:99:1588,0,1534 0/0:244,0:244:99:0,674,8663 0/0:152,0:152:99:0,424,5488 0/0:167,0:167:99:0,442,5779 0/0:176,0:176:99:0,469,6082 0/0:75,0:75:99:0,214,2672 0/0:101,0:102:99:0,265,3346 0/0:112,0:112:99:0,292,3633 0/0:118,0:118:99:0,340,4208 0/0:86,0:86:99:0,232,2892 0/0:151,0:151:99:0,421,5284 0/0:136,0:136:99:0,367,4620 0/0:95,0:95:99:0,259,3258 0/0:112,0:112:99:0,286,3571 0/0:118,0:118:99:0,319,4065 0/0:184,1:185:99:0,509,6362 0/1:69,52:121:99:1500,0,2000 0/0:116,0:116:99:0,313,3949 0/0:104,0:104:99:0,280,3478 0/0:103,0:103:99:0,283,3471 0/0:88,0:88:99:0,250,3125 12 114837349 . C A 2424.88 . 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T C 49964.92 . 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T C 322.84 . 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G A 732.55 . 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C T 2892.41 . 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G A 72420.18 . 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C T 102.20 . 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A G 5499.74 . 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G A 1207.88 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.643;DP=2941;DS;Dels=0.00;FS=5.672;HRun=1;HaplotypeScore=1.6731;InbreedingCoeff=-0.0244;MQ=59.45;MQ0=0;MQRankSum=0.260;QD=12.08;ReadPosRankSum=-0.026 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,156,1962 0/0:52,0:52:99:0,147,1838 0/0:42,0:42:99:0,123,1553 0/0:131,0:131:99:0,364,4895 0/0:108,0:108:99:0,313,4162 0/0:90,0:90:99:0,253,3413 0/0:85,0:85:99:0,244,3279 0/0:96,0:96:99:0,277,3711 0/0:49,0:49:99:0,138,1745 0/0:60,0:60:99:0,169,2106 0/0:36,0:36:99:0,102,1293 0/1:33,29:62:99:823,0,1029 0/0:39,0:40:99:0,108,1364 0/1:22,16:38:99:447,0,683 0/0:167,0:167:99:0,457,5831 0/0:38,0:38:99:0,111,1363 0/0:81,0:81:99:0,223,2824 0/0:50,0:50:99:0,144,1815 0/0:94,0:94:99:0,256,3151 0/0:106,0:106:99:0,295,3697 0/0:96,0:97:99:0,262,3318 0/0:53,0:53:99:0,156,1954 0/0:132,0:132:99:0,388,5221 0/0:83,0:83:99:0,235,3148 0/0:92,0:92:99:0,262,3498 0/0:69,0:69:99:0,190,2558 0/0:43,0:43:99:0,129,1597 0/0:58,0:58:99:0,163,2047 0/0:39,0:39:99:0,108,1382 0/0:56,0:56:99:0,166,2089 0/0:53,0:53:99:0,153,1925 0/0:100,0:100:99:0,289,3556 0/0:60,0:60:99:0,175,2184 0/0:57,0:57:99:0,166,2067 0/0:55,0:55:99:0,156,1974 0/0:57,0:57:99:0,160,2036 0/0:95,0:96:99:0,256,3230 0/0:58,0:58:99:0,166,2094 0/0:54,0:54:99:0,153,1939 0/0:47,0:47:99:0,138,1716 0/0:52,0:52:99:0,144,1823 0/0:50,0:50:99:0,147,1858 12 119978508 . C A 1182.83 . AC=2;AF=0.024;AN=84;BaseQRankSum=8.234;DP=2883;DS;Dels=0.00;FS=7.682;HRun=0;HaplotypeScore=1.6710;InbreedingCoeff=-0.0244;MQ=59.44;MQ0=0;MQRankSum=0.501;QD=12.32;ReadPosRankSum=0.091 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,153,1692 0/0:52,0:52:99:0,147,1629 0/0:43,0:43:99:0,126,1373 0/0:127,0:127:99:0,355,4212 0/0:101,0:102:99:0,295,3515 0/0:90,0:90:99:0,250,3001 0/0:84,0:84:99:0,247,2932 0/0:97,0:97:99:0,277,3324 0/0:48,0:48:99:0,138,1521 0/0:59,0:59:99:0,156,1726 0/0:36,0:36:99:0,102,1117 0/1:32,29:61:99:843,0,835 0/0:39,0:39:99:0,108,1214 0/1:20,14:35:99:403,0,515 0/0:164,0:165:99:0,448,4978 0/0:39,0:39:99:0,111,1198 0/0:79,0:79:99:0,217,2410 0/0:50,0:50:99:0,147,1625 0/0:89,0:89:99:0,238,2602 0/0:103,0:103:99:0,286,3176 0/0:94,0:94:99:0,250,2819 0/0:54,0:54:99:0,156,1719 0/0:125,0:125:99:0,370,4487 0/0:82,0:82:99:0,235,2831 0/0:90,0:90:99:0,262,3155 0/0:66,0:66:99:0,184,2204 0/0:41,0:42:99:0,123,1322 0/0:58,0:58:99:0,165,1818 0/0:39,0:39:99:0,108,1221 0/0:55,0:55:99:0,159,1752 0/0:53,0:53:99:0,153,1678 0/0:97,0:97:99:0,262,2883 0/0:56,1:58:99:0,126,1710 0/0:54,0:55:99:0,153,1687 0/0:54,0:54:99:0,156,1727 0/0:56,0:56:99:0,156,1747 0/0:94,0:94:99:0,259,2848 0/0:58,0:58:99:0,168,1852 0/0:52,0:53:99:0,147,1645 0/0:46,0:46:99:0,132,1453 0/0:50,0:50:99:0,141,1578 0/0:51,0:51:99:0,150,1653 12 120139456 . G A 633.43 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.459;DP=1613;Dels=0.00;FS=16.402;HRun=0;HaplotypeScore=1.0227;InbreedingCoeff=-0.0244;MQ=59.21;MQ0=0;MQRankSum=0.226;QD=15.45;ReadPosRankSum=0.894 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,120,1357 0/0:29,0:29:84.22:0,84,930 0/0:29,0:29:78.19:0,78,888 0/0:43,0:43:99:0,111,1419 0/0:47,0:47:99:0,123,1549 0/0:40,0:40:99:0,111,1357 0/0:16,0:16:45.14:0,45,551 0/0:27,0:27:72.22:0,72,892 0/0:34,0:34:96.22:0,96,1075 0/0:29,0:29:75.18:0,75,863 0/0:31,0:31:87.21:0,87,958 0/0:33,0:33:99:0,99,1093 0/0:29,1:30:81.20:0,81,923 0/0:22,0:22:66.16:0,66,714 0/0:115,0:115:99:0,310,3550 0/0:36,0:36:99:0,105,1162 0/0:44,0:44:99:0,123,1414 0/0:36,0:36:96.25:0,96,1093 0/0:49,0:49:99:0,135,1493 0/0:62,0:62:99:0,156,1845 0/0:55,0:55:99:0,153,1745 0/0:43,0:43:99:0,120,1358 0/0:43,0:43:99:0,126,1543 0/1:7,10:17:99:306,0,173 0/0:22,0:22:60.18:0,60,734 0/1:10,14:24:99:390,0,258 0/0:31,0:31:87.21:0,87,955 0/0:45,0:45:99:0,120,1333 0/0:31,0:31:81.23:0,81,974 0/0:36,0:36:93.26:0,93,1105 0/0:32,0:32:96.23:0,96,1058 0/0:72,0:72:99:0,180,2118 0/0:48,0:48:99:0,129,1511 0/0:38,0:38:99:0,105,1207 0/0:47,0:47:99:0,126,1467 0/0:37,0:37:99:0,99,1143 0/0:30,0:30:75.19:0,75,818 0/0:39,1:40:99:0,108,1202 0/0:26,0:26:75.21:0,75,862 0/0:36,0:36:99:0,102,1120 0/0:32,0:32:87.19:0,87,976 0/0:34,0:34:99:0,99,1103 12 120148363 . C T 2812.16 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.553;DP=6049;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.6594;InbreedingCoeff=-0.0120;MQ=59.39;MQ0=0;MQRankSum=2.031;QD=11.82;ReadPosRankSum=0.407 GT:AD:DP:GQ:PL 0/0:130,0:130:99:0,352,4144 0/0:119,0:119:99:0,322,3792 0/0:109,0:109:99:0,283,3365 0/0:249,0:249:99:0,662,8273 0/0:218,0:219:99:0,551,7052 0/0:183,0:184:99:0,445,5637 0/0:147,0:148:99:0,361,4583 0/0:180,0:180:99:0,442,5548 0/0:121,0:121:99:0,322,3812 0/0:117,0:117:99:0,331,3821 0/0:118,0:118:99:0,313,3662 0/0:105,0:105:99:0,277,3308 0/0:99,0:99:99:0,271,3142 0/0:137,1:140:99:0,352,4230 0/0:249,0:250:99:0,659,7585 0/0:97,0:97:99:0,262,3110 0/0:104,0:104:99:0,292,3376 0/0:100,0:100:99:0,262,3150 0/0:188,0:189:99:0,484,5767 0/0:249,0:250:99:0,623,7528 0/0:208,0:209:99:0,520,6243 0/0:159,0:159:99:0,412,4844 0/1:126,111:237:99:2858,0,3433 0/0:141,0:141:99:0,361,4655 0/0:185,1:187:99:0,466,5965 0/0:152,0:152:99:0,394,5022 0/0:92,0:92:99:0,250,2900 0/0:106,0:106:99:0,283,3325 0/0:81,0:81:99:0,208,2495 0/0:139,0:140:99:0,373,4425 0/0:105,0:107:99:0,274,3336 0/0:212,0:213:99:0,539,6572 0/0:174,0:174:99:0,445,5282 0/0:99,0:99:99:0,274,3273 0/0:106,0:106:99:0,298,3428 0/0:114,0:114:99:0,307,3581 0/0:212,0:212:99:0,529,6258 0/0:97,0:98:99:0,268,3179 0/0:96,0:98:99:0,274,3209 0/0:114,0:114:99:0,304,3480 0/0:88,0:88:99:0,247,2840 0/0:93,0:93:99:0,256,2977 12 120151493 . T C 1600.43 . AC=5;AF=0.060;AN=84;BaseQRankSum=-4.608;DP=1198;Dels=0.00;FS=1.088;HRun=1;HaplotypeScore=2.0820;InbreedingCoeff=-0.0633;MQ=59.09;MQ0=0;MQRankSum=-0.103;QD=11.43;ReadPosRankSum=-1.111 GT:AD:DP:GQ:PL 0/0:22,0:22:63.17:0,63,744 0/0:19,0:19:54.17:0,54,672 0/0:22,0:22:60.17:0,60,708 0/0:43,0:43:99:0,114,1422 0/0:47,0:47:99:0,126,1583 0/0:46,0:47:99:0,120,1524 0/0:32,0:32:90.27:0,90,1112 0/0:36,0:36:99:0,99,1229 0/1:9,12:21:99:316,0,244 0/0:25,0:25:72.23:0,72,894 0/1:10,5:15:99:130,0,320 0/0:13,0:13:39.12:0,39,466 0/0:23,0:23:60.17:0,60,714 0/0:27,0:27:78.23:0,78,950 0/0:65,0:65:99:0,184,2226 0/0:21,0:21:57.18:0,57,697 0/0:23,0:23:63.19:0,63,777 0/0:21,0:21:57.16:0,57,678 0/0:41,0:41:99:0,111,1368 0/0:55,0:55:99:0,138,1723 0/0:42,0:42:99:0,114,1404 0/0:22,0:22:57.16:0,57,679 0/1:30,21:52:99:539,0,845 0/0:27,0:27:78.20:0,78,944 0/0:25,0:25:69.19:0,69,839 0/0:22,0:22:63.17:0,63,737 0/0:21,0:21:60.18:0,60,721 0/0:14,0:14:42.09:0,42,481 0/0:17,0:17:39.12:0,39,497 0/0:22,0:22:66.20:0,66,800 0/0:21,0:21:51.15:0,51,626 0/0:56,0:57:99:0,150,1872 0/0:26,0:26:75.21:0,75,903 0/0:21,0:21:63.19:0,63,765 0/0:23,0:23:60.17:0,60,728 0/0:25,0:25:72.21:0,72,883 0/0:33,0:33:87.27:0,87,1081 0/1:12,15:27:99:410,0,282 0/0:16,0:16:48.15:0,48,592 0/0:26,0:26:72.20:0,72,869 0/0:16,0:16:48.15:0,48,588 0/1:14,11:25:99:302,0,436 12 120151501 . G A 1281.92 . AC=5;AF=0.060;AN=84;BaseQRankSum=-5.052;DP=1055;Dels=0.00;FS=4.920;HRun=1;HaplotypeScore=2.2140;InbreedingCoeff=-0.0633;MQ=58.94;MQ0=0;MQRankSum=1.624;QD=13.78;ReadPosRankSum=2.079 GT:AD:DP:GQ:PL 0/0:18,0:18:51.13:0,51,591 0/0:13,0:13:39.12:0,39,490 0/0:15,0:15:45.11:0,45,535 0/0:39,0:39:99:0,105,1351 0/0:41,0:41:99:0,111,1421 0/0:40,1:41:96.30:0,96,1267 0/0:28,0:28:81.26:0,81,1057 0/0:29,0:29:81.26:0,81,1070 0/0:20,0:20:54.15:0,54,665 0/0:22,0:22:63.19:0,63,780 0/1:6,9:15:99:278,0,159 0/1:7,3:10:65.27:65,0,226 0/0:19,0:19:51.14:0,51,600 0/1:11,12:23:99:324,0,356 0/0:50,0:51:99:0,129,1638 0/0:19,0:19:51.16:0,51,632 0/0:21,0:21:54.15:0,54,651 0/0:17,0:18:45.13:0,45,543 0/0:35,0:36:93.29:0,93,1154 0/0:49,0:49:99:0,123,1551 0/0:37,0:37:99:0,102,1239 0/0:20,0:21:48.14:0,48,581 0/0:45,0:45:99:0,123,1568 0/1:8,14:22:99:425,0,217 0/1:13,10:23:99:287,0,425 0/0:22,0:22:54.16:0,54,680 0/0:20,0:20:51.16:0,51,640 0/0:14,0:14:39.12:0,39,483 0/0:18,0:18:48.14:0,48,596 0/0:21,0:21:63.19:0,63,764 0/0:20,0:20:51.11:0,51,598 0/0:51,0:52:99:0,126,1644 0/0:26,0:26:78.23:0,78,952 0/0:19,0:19:51.15:0,51,625 0/0:17,0:17:42.13:0,42,536 0/0:21,0:21:60.18:0,60,738 0/0:30,0:30:75.22:0,75,907 0/0:24,1:25:66.20:0,66,813 0/0:16,0:16:48.11:0,48,555 0/0:22,0:22:57.18:0,57,704 0/0:15,0:15:42.12:0,42,498 0/0:22,0:22:63.18:0,63,770 12 120156141 . G A 23097.89 . AC=26;AF=0.310;AN=84;BaseQRankSum=11.330;DP=2259;Dels=0.00;FS=18.232;HRun=0;HaplotypeScore=1.6527;InbreedingCoeff=-0.1141;MQ=59.11;MQ0=0;MQRankSum=0.621;QD=16.52;ReadPosRankSum=2.692 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,108,1257 0/0:35,0:35:99:0,99,1090 0/0:30,0:30:81.24:0,81,979 0/1:101,89:190:99:2513,0,2755 0/1:63,59:122:99:1791,0,1711 0/1:38,28:66:99:842,0,1109 0/1:39,44:84:99:1356,0,1018 1/1:0,79:80:99:2748,226,0 0/0:41,0:41:99:0,105,1175 0/1:12,20:33:99:513,0,255 0/0:34,0:34:99:0,99,1111 0/1:14,13:27:99:383,0,393 1/1:0,27:27:78.23:945,78,0 0/1:24,15:39:99:357,0,659 0/1:48,62:110:99:1697,0,1179 0/1:10,15:25:99:419,0,203 0/1:29,16:45:99:408,0,776 0/1:14,17:31:99:528,0,381 0/1:21,27:48:99:794,0,479 0/0:69,0:69:99:0,198,2247 0/1:27,28:55:99:783,0,617 0/1:11,17:28:99:534,0,293 0/1:76,84:160:99:2477,0,2005 0/0:58,0:58:99:0,159,1905 0/0:74,1:76:99:0,188,2548 0/0:87,0:87:99:0,232,2790 0/0:23,0:23:60.15:0,60,669 0/0:37,0:37:87.21:0,87,999 0/0:35,0:35:99:0,99,1081 0/0:33,0:33:90.25:0,90,1047 0/1:18,19:37:99:567,0,487 0/0:79,0:79:99:0,214,2511 0/0:43,0:43:99:0,117,1332 0/1:16,26:42:99:734,0,413 0/0:45,0:45:99:0,126,1450 1/1:0,38:38:99:1247,102,0 0/1:28,20:48:99:526,0,660 0/0:31,0:31:84.22:0,84,955 0/1:12,17:29:99:462,0,345 0/0:42,0:42:99:0,123,1411 0/1:17,16:34:99:475,0,503 0/0:24,0:24:63.16:0,63,695 12 120527791 . G A 2737.41 . 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A C 41433.62 . 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A G 34625.45 . 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C T 29742.14 . 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C T 2175.11 . 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G A 267.57 . 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G A 1776.81 . 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G C 668.48 . 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G T 859.34 . 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C T 2207.39 . AC=3;AF=0.036;AN=84;BaseQRankSum=-7.609;DP=2766;Dels=0.00;FS=6.534;HRun=0;HaplotypeScore=1.3192;InbreedingCoeff=-0.0370;MQ=59.58;MQ0=0;MQRankSum=-1.191;QD=14.72;ReadPosRankSum=-2.966 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,117,1406 0/0:43,0:43:99:0,117,1368 0/0:50,0:50:99:0,150,1777 0/0:108,0:108:99:0,325,4210 0/0:103,0:103:99:0,310,4081 0/0:88,0:88:99:0,262,3449 0/0:83,0:83:99:0,232,3005 0/0:72,1:73:99:0,178,2608 0/0:50,1:51:99:0,104,1629 0/0:53,0:53:99:0,153,1800 0/0:40,0:40:99:0,111,1379 0/0:66,0:66:99:0,190,2330 0/0:40,0:40:99:0,117,1440 0/0:40,1:42:94.67:0,95,1416 0/0:178,0:181:99:0,502,6091 0/0:52,0:52:99:0,153,1859 0/0:73,0:73:99:0,214,2571 0/0:48,0:48:99:0,138,1658 0/0:87,0:88:99:0,253,2971 0/0:76,0:76:99:0,226,2734 0/0:99,0:100:99:0,295,3527 0/1:25,20:45:99:587,0,761 0/0:110,0:110:99:0,316,4201 0/0:82,0:82:99:0,241,3122 0/0:84,0:84:99:0,250,3275 0/0:65,0:65:99:0,196,2541 0/0:45,0:45:99:0,135,1605 0/0:65,0:65:99:0,193,2315 0/0:36,0:37:99:0,108,1314 0/0:48,0:48:99:0,144,1768 0/0:47,0:47:99:0,129,1589 0/0:61,0:61:99:0,175,2142 0/0:48,0:48:99:0,132,1604 0/0:61,0:61:99:0,178,2169 0/0:59,0:59:99:0,175,2103 0/0:60,0:60:99:0,178,2153 0/0:74,0:74:99:0,220,2684 0/0:56,0:56:99:0,168,2019 0/0:55,0:55:99:0,159,1948 0/1:23,35:58:99:1039,0,607 0/1:24,23:47:99:657,0,721 0/0:62,0:62:99:0,184,2197 12 121176679 . C T 26282.59 . 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T G 28.16 . AC=5;AF=0.060;AN=84;BaseQRankSum=-10.863;DP=726;Dels=0.00;FS=269.788;HRun=2;HaplotypeScore=0.5992;InbreedingCoeff=-0.1168;MQ=58.82;MQ0=0;MQRankSum=-1.142;QD=0.31;ReadPosRankSum=-7.936 GT:AD:DP:GQ:PL 0/0:9,3:12:5.40:0,5,306 0/0:6,4:10:18.06:0,18,221 0/0:2,4:6:6.02:0,6,73 0/1:26,10:36:28.40:28,0,739 0/0:24,16:40:13.14:0,13,780 0/0:16,4:20:14.70:0,15,499 0/0:18,4:22:54.03:0,54,619 0/0:15,12:27:20.47:0,20,509 0/0:7,2:9:21.06:0,21,255 0/0:6,2:8:18.05:0,18,217 0/0:10,2:12:29.83:0,30,343 0/0:8,3:11:0.75:7,0,264 0/0:2,2:4:6.02:0,6,72 0/0:11,2:13:30.09:0,30,360 0/0:26,17:43:52.47:0,52,791 0/0:8,2:10:24.07:0,24,278 0/0:15,3:18:24.97:0,25,449 0/0:15,2:17:45.12:0,45,532 0/0:21,3:24:56.19:0,56,642 0/0:22,7:29:24.45:0,24,577 0/1:12,3:15:43.85:44,0,318 0/0:19,3:22:31.47:0,31,602 0/0:23,11:34:38.78:0,39,788 0/0:8,9:17:21.07:0,21,268 0/0:17,7:24:8.69:0,9,441 0/0:13,8:21:2.58:1,0,394 0/0:5,1:6:15.04:0,15,177 0/0:14,1:15:36.11:0,36,432 0/0:8,1:9:24.07:0,24,287 0/0:7,2:9:21.05:0,21,242 0/0:8,3:11:24.07:0,24,293 0/0:14,8:23:8.98:0,9,444 0/0:15,1:17:45.13:0,45,538 0/0:9,7:16:1.92:3,0,271 0/0:15,1:17:42.13:0,42,510 0/0:15,5:20:42.12:0,42,494 0/0:15,3:18:42.12:0,42,504 0/0:12,1:13:1.76:0,2,362 0/1:11,4:15:8.28:8,0,350 0/0:7,1:8:0.36:0,0,223 0/1:14,4:18:19.83:20,0,407 0/1:4,3:7:13.61:14,0,127 12 121435342 . C T 7992.28 . 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T C 79.29 . AC=6;AF=0.071;AN=84;BaseQRankSum=-11.817;DP=975;Dels=0.00;FS=313.498;HRun=3;HaplotypeScore=0.5118;InbreedingCoeff=-0.1131;MQ=58.46;MQ0=0;MQRankSum=3.242;QD=0.58;ReadPosRankSum=-8.495 GT:AD:DP:GQ:PL 0/0:15,3:18:45.14:0,45,555 0/0:11,4:15:8.43:0,8,363 0/0:9,5:14:1.22:5,0,268 0/0:44,18:62:20.75:0,21,1361 0/1:32,16:48:51.61:52,0,894 0/0:18,6:24:16.48:0,16,552 0/0:21,5:26:21.66:0,22,585 0/0:25,13:38:28.11:0,28,739 0/0:23,6:29:40.40:0,40,784 0/0:8,1:9:24.06:0,24,279 0/0:13,1:14:36.11:0,36,440 0/0:11,3:14:33.09:0,33,386 0/0:14,2:16:42.10:0,42,494 0/0:10,1:11:30.09:0,30,372 0/0:41,9:50:96.27:0,96,1150 0/1:16,5:21:14.04:14,0,442 0/0:13,4:17:36.11:0,36,432 0/0:9,6:15:27.07:0,27,311 0/0:34,4:38:67.65:0,68,1135 0/0:28,11:39:43.49:0,43,806 0/0:21,5:26:50.94:0,51,590 0/0:13,5:18:33.08:0,33,381 0/0:36,15:51:4.84:0,5,1122 0/0:15,3:18:42.13:0,42,530 0/0:22,7:29:2.30:0,2,622 0/1:11,4:15:32.06:32,0,253 0/0:13,2:15:39.11:0,39,461 0/0:22,2:24:63.18:0,63,759 0/0:10,3:13:0.39:0,0,259 0/1:11,3:14:23.03:23,0,346 0/0:11,1:12:33.10:0,33,411 0/0:25,7:33:38.36:0,38,774 0/0:14,7:21:3.19:0,3,337 0/0:14,4:18:39.12:0,39,476 0/1:5,3:8:38.18:38,0,166 0/0:15,6:21:19.11:0,19,456 0/1:24,6:30:20.98:21,0,733 0/0:15,3:18:13.59:0,14,488 0/0:15,2:17:14.71:0,15,520 0/0:15,4:19:15.50:0,16,475 0/0:13,1:15:8.52:0,9,415 0/0:19,3:22:57.18:0,57,710 12 121435427 . G A 7355.45 . 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G A 21995.93 . 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T C 9548 . 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G A 32668.25 . 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C G 5621.98 . 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G A 5934.20 . 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T C 13481.70 . 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C T 1253.50 . 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G A 685.33 . 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C T 18765.80 . 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C T 49505.43 . 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G A 33867.67 . 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T C 8226.68 . 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C T 45692.99 . 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A G 259.41 . 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C T 1497.25 . 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G A 1929.42 . 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A C 11116.48 . 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C G 4575.68 . 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C A 1463.71 . 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G C 55698.67 . 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C CT 1117.87 . 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TGTTTCCA T 34528.75 . 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G T 49549.79 . 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C T 158.93 . 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A G 323.84 . 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C T 892.03 . 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A C 360.49 . 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C T 650.04 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.652;DP=2148;Dels=0.00;FS=0.776;HRun=0;HaplotypeScore=0.7628;InbreedingCoeff=-0.0244;MQ=59.21;MQ0=0;MQRankSum=1.366;QD=10.83;ReadPosRankSum=0.188 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,123,1469 0/0:53,0:53:99:0,150,1748 0/0:42,0:42:99:0,120,1411 0/0:65,0:65:99:0,172,2187 0/0:63,0:63:99:0,169,2198 0/0:54,0:54:99:0,144,1894 0/0:48,0:48:99:0,132,1689 0/0:54,0:54:99:0,141,1866 0/0:29,0:29:75.23:0,75,931 0/0:34,0:34:96.28:0,96,1135 0/0:57,0:57:99:0,159,1895 0/1:23,12:36:99:310,0,624 0/1:11,13:24:99:402,0,299 0/0:49,0:49:99:0,141,1672 0/0:136,0:136:99:0,364,4330 0/0:38,0:38:99:0,108,1279 0/0:53,0:53:99:0,153,1786 0/0:44,0:44:99:0,126,1490 0/0:56,0:56:99:0,153,1761 0/0:74,0:74:99:0,199,2379 0/0:66,0:66:99:0,171,2024 0/0:38,0:39:99:0,108,1264 0/0:72,0:72:99:0,202,2620 0/0:58,0:58:99:0,156,1988 0/0:51,0:51:99:0,117,1583 0/0:55,0:55:99:0,144,1879 0/0:36,0:36:99:0,102,1202 0/0:41,0:41:99:0,117,1343 0/0:39,0:39:99:0,105,1232 0/0:47,0:47:99:0,123,1478 0/0:36,0:36:99:0,108,1289 0/0:69,0:69:99:0,171,2089 0/0:54,0:54:99:0,129,1564 0/0:38,0:38:99:0,108,1283 0/0:45,0:45:99:0,126,1491 0/0:60,0:60:99:0,168,1994 0/0:56,0:56:99:0,156,1803 0/0:51,0:51:99:0,138,1652 0/0:35,0:35:99:0,102,1196 0/0:53,0:53:99:0,150,1773 0/0:40,0:40:99:0,114,1310 0/0:54,0:54:99:0,159,1874 12 123333065 . C T 47707.91 . 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T G 13.43 . 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A G 53.12 . 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G A 161.61 . 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T G 125.87 . 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G T 177.34 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.692;DP=1209;Dels=0.00;FS=2.331;HRun=2;HaplotypeScore=0.8397;InbreedingCoeff=-0.0121;MQ=58.71;MQ0=0;MQRankSum=0.402;QD=8.06;ReadPosRankSum=1.376 GT:AD:DP:GQ:PL 0/0:27,0:27:81.26:0,81,1025 0/0:16,0:16:48.15:0,48,605 0/0:20,0:20:57.16:0,57,691 0/0:46,1:47:99:0,112,1827 0/0:53,0:53:99:0,153,2071 0/0:28,0:28:84.27:0,84,1129 0/0:21,0:21:60.20:0,60,822 0/0:29,0:29:87.27:0,87,1147 0/0:21,0:21:63.20:0,63,803 0/0:24,0:24:72.23:0,72,902 0/0:21,0:21:57.18:0,57,729 0/0:34,0:34:99:0,99,1257 0/0:17,0:18:51.15:0,51,630 0/0:24,0:24:72.23:0,72,919 0/0:70,0:71:99:0,205,2506 0/0:29,0:29:87.28:0,87,1102 0/0:21,0:21:63.18:0,63,758 0/0:26,0:26:78.23:0,78,963 0/0:46,0:46:99:0,126,1579 0/0:41,0:42:99:0,111,1409 0/0:61,0:61:99:0,175,2226 0/0:25,0:25:72.22:0,72,903 0/0:43,0:43:99:0,129,1776 0/0:23,0:23:69.23:0,69,948 0/0:28,0:28:75.24:0,75,1007 0/0:22,0:22:63.21:0,63,866 0/0:11,1:12:33.10:0,33,419 0/1:14,8:22:99:224,0,444 0/0:17,0:17:51.16:0,51,652 0/0:26,0:26:78.23:0,78,963 0/0:29,0:29:87.28:0,87,1106 0/0:39,0:39:99:0,114,1456 0/0:18,0:18:51.16:0,51,635 0/0:28,0:28:84.26:0,84,1049 0/0:22,0:22:57.18:0,57,723 0/0:24,0:24:69.21:0,69,851 0/0:44,0:44:99:0,126,1577 0/0:21,0:21:63.20:0,63,794 0/0:24,0:24:72.23:0,72,905 0/0:23,0:23:69.21:0,69,856 0/0:17,0:17:51.15:0,51,610 0/0:23,0:23:63.19:0,63,779 12 123480034 . G A 4509.62 . AC=3;AF=0.036;AN=84;BaseQRankSum=-0.997;DP=2875;Dels=0.00;FS=3.834;HRun=0;HaplotypeScore=2.2004;InbreedingCoeff=-0.0370;MQ=57.26;MQ0=0;MQRankSum=5.119;QD=12.74;ReadPosRankSum=2.303 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,141,1636 0/0:78,0:78:99:0,196,2318 0/0:46,0:46:99:0,120,1424 0/1:64,67:131:99:1793,0,1733 0/0:118,0:118:99:0,310,3895 0/0:85,0:85:99:0,223,2841 0/0:70,0:70:99:0,181,2254 0/0:85,0:85:99:0,199,2579 0/0:49,0:49:99:0,126,1515 0/0:55,0:55:99:0,141,1683 0/0:44,0:44:99:0,114,1371 0/0:47,0:47:99:0,129,1530 0/0:40,0:40:99:0,105,1257 0/0:58,0:58:99:0,168,1948 0/0:155,0:156:99:0,394,4662 0/0:60,0:60:99:0,168,1918 0/0:55,1:56:99:0,131,1786 0/0:47,0:47:99:0,120,1468 0/0:77,1:78:99:0,191,2430 0/1:46,44:90:99:1207,0,1106 0/0:83,0:83:99:0,223,2636 0/0:58,0:59:99:0,156,1857 0/1:71,62:133:99:1510,0,2004 0/0:57,0:57:99:0,147,1886 0/0:80,0:80:99:0,208,2679 0/0:70,0:70:99:0,178,2265 0/0:51,0:51:99:0,135,1620 0/0:68,0:68:99:0,177,2123 0/0:55,0:55:99:0,144,1724 0/0:55,0:55:99:0,150,1750 0/0:47,0:47:99:0,132,1545 0/0:88,0:88:99:0,238,2794 0/0:71,0:71:99:0,193,2270 0/0:62,0:63:99:0,165,1941 0/0:48,1:49:95.92:0,96,1452 0/0:48,0:48:99:0,129,1534 0/0:88,0:88:99:0,232,2756 0/0:55,0:55:99:0,147,1759 0/0:43,0:43:99:0,117,1346 0/0:73,0:73:99:0,205,2377 0/0:52,0:53:99:0,135,1569 0/0:40,0:40:99:0,111,1275 12 123664514 . G A 12058.08 . 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C T 680.33 . 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A G 110542.66 . 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T C 7077.69 . 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G A 93822.29 . 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C T 8521.46 . 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G C 1935.32 . 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T C 31699.88 . AC=84;AF=1.000;AN=84;BaseQRankSum=1.721;DP=939;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.7967;InbreedingCoeff=-0.0008;MQ=58.34;MQ0=0;MQRankSum=-0.610;QD=33.76;ReadPosRankSum=-0.042 GT:AD:DP:GQ:PL 1/1:0,13:13:39.12:482,39,0 1/1:0,19:19:54.16:663,54,0 1/1:0,23:23:69.21:841,69,0 1/1:0,40:40:99:1411,111,0 1/1:0,28:28:75.21:968,75,0 1/1:0,32:32:87.25:1081,87,0 1/1:0,16:16:48.14:625,48,0 1/1:0,29:29:72.23:927,72,0 1/1:0,13:13:33.11:428,33,0 1/1:0,4:4:12.04:152,12,0 1/1:0,20:20:51.16:637,51,0 1/1:0,24:24:63.20:805,63,0 1/1:0,15:15:39.12:503,39,0 1/1:0,18:18:54.17:668,54,0 1/1:0,52:53:99:1793,147,0 1/1:0,11:11:33.08:400,33,0 1/1:0,22:22:60.19:763,60,0 1/1:0,9:9:27.08:331,27,0 1/1:0,23:24:63.19:791,63,0 1/1:0,44:44:99:1391,111,0 1/1:0,31:31:81.25:1015,81,0 1/1:0,18:18:51.14:622,51,0 1/1:0,46:46:99:1640,126,0 1/1:0,18:18:51.17:687,51,0 1/1:0,32:32:81.26:1090,81,0 1/1:0,31:31:81.23:1024,81,0 1/1:0,11:11:27.09:351,27,0 1/1:0,21:21:57.17:698,57,0 1/1:0,15:15:42.13:519,42,0 1/1:0,19:19:54.13:630,54,0 1/1:0,17:17:45.14:568,45,0 1/1:0,32:32:81.23:999,81,0 1/1:0,26:26:63.20:806,63,0 1/1:0,19:19:48.15:612,48,0 1/1:0,8:8:24.05:278,24,0 1/1:0,17:17:42.11:526,42,0 1/1:0,22:23:60.19:743,60,0 1/1:0,28:28:66.20:823,66,0 1/1:0,18:18:51.16:644,51,0 1/1:0,15:15:42.08:479,42,0 1/1:0,12:12:36.11:436,36,0 1/1:1,24:25:69.21:848,69,0 12 124114995 . A G 558.79 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.745;DP=2525;Dels=0.00;FS=3.939;HRun=1;HaplotypeScore=1.6744;InbreedingCoeff=-0.0120;MQ=59.26;MQ0=0;MQRankSum=-0.100;QD=9.47;ReadPosRankSum=-0.320 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,132,1569 0/0:43,0:43:99:0,123,1512 0/0:63,0:63:99:0,165,2029 0/0:79,0:79:99:0,232,2810 0/0:77,0:77:99:0,223,2732 0/0:55,0:56:99:0,150,1912 0/0:53,0:54:99:0,144,1779 0/0:52,0:52:99:0,147,1820 0/0:56,0:56:99:0,150,1847 0/0:46,0:46:99:0,132,1566 0/0:44,0:44:99:0,129,1561 0/0:44,0:44:99:0,129,1567 0/0:47,0:47:99:0,129,1571 0/1:35,24:59:99:605,0,1007 0/0:152,0:152:99:0,409,4937 0/0:49,0:49:99:0,144,1745 0/0:56,0:56:99:0,144,1771 0/0:47,0:47:99:0,138,1645 0/0:78,0:78:99:0,196,2390 0/0:75,0:75:99:0,214,2588 0/0:89,0:89:99:0,238,2857 0/0:53,0:53:99:0,144,1766 0/0:88,0:88:99:0,244,3010 0/0:48,0:48:99:0,135,1691 0/0:56,0:56:99:0,156,1933 0/0:60,1:61:99:0,166,2086 0/0:50,0:50:99:0,138,1677 0/0:60,0:60:99:0,178,2183 0/0:56,0:56:99:0,153,1860 0/0:52,0:52:99:0,147,1816 0/0:45,0:45:99:0,132,1611 0/0:95,0:95:99:0,250,3106 0/0:58,0:58:99:0,165,1995 0/0:53,0:53:99:0,156,1905 0/0:59,0:59:99:0,162,1944 0/0:48,0:48:99:0,138,1684 0/0:59,0:59:99:0,156,1889 0/0:54,0:54:99:0,159,1936 0/0:60,0:60:99:0,171,2053 0/0:49,0:49:99:0,144,1727 0/0:60,0:60:99:0,171,2029 0/0:50,0:50:99:0,144,1759 12 124116930 . G GGC 269.83 . 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T C 66712.42 . 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T C 114046.04 . 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T C 54802.82 . AC=55;AF=0.655;AN=84;BaseQRankSum=-9.989;DP=2907;Dels=0.00;FS=1.402;HRun=1;HaplotypeScore=1.5773;InbreedingCoeff=-0.0006;MQ=59.31;MQ0=0;MQRankSum=-1.120;QD=21.63;ReadPosRankSum=-0.261 GT:AD:DP:GQ:PL 0/1:27,27:54:99:761,0,762 0/1:32,27:59:99:669,0,936 1/1:0,62:62:99:2094,180,0 1/1:0,109:109:99:3556,286,0 1/1:0,79:79:99:2782,220,0 0/1:40,35:75:99:881,0,1237 1/1:0,74:74:99:2399,187,0 0/1:51,37:88:99:951,0,1357 0/0:60,0:60:99:0,165,2035 0/1:25,21:46:99:582,0,712 0/1:34,31:65:99:856,0,994 1/1:1,56:57:99:1766,127,0 1/1:0,44:44:99:1439,126,0 1/1:0,53:53:99:1721,150,0 0/1:105,90:195:99:2298,0,2934 0/1:24,37:61:99:1005,0,705 0/1:25,32:57:99:865,0,683 0/1:29,29:59:99:769,0,858 0/1:57,41:99:99:947,0,1593 0/1:60,61:121:99:1651,0,1793 0/0:87,1:88:99:0,232,2856 0/0:56,0:56:99:0,147,1844 1/1:0,107:108:99:3704,292,0 0/1:36,34:70:99:878,0,1033 0/0:89,0:89:99:0,244,3088 1/1:0,61:61:99:2084,168,0 1/1:0,50:50:99:1667,144,0 0/1:30,29:59:99:794,0,870 1/1:0,57:57:99:1903,162,0 1/1:0,50:50:99:1706,144,0 1/1:0,53:53:99:1773,147,0 0/0:80,0:80:99:0,208,2662 1/1:0,56:56:99:1722,147,0 1/1:0,67:67:99:2058,177,0 1/1:0,48:48:99:1618,138,0 1/1:0,51:51:99:1593,141,0 0/1:41,39:80:99:1002,0,1112 1/1:2,63:65:99:1935,127,0 0/1:36,20:56:99:506,0,1017 0/1:24,19:43:99:525,0,701 0/1:21,22:43:99:681,0,606 0/1:36,24:60:99:660,0,1009 12 124288212 . C T 2088.93 . AC=9;AF=0.107;AN=84;BaseQRankSum=-7.956;DP=790;Dels=0.00;FS=2.768;HRun=1;HaplotypeScore=0.3114;InbreedingCoeff=0.3773;MQ=58.93;MQ0=0;MQRankSum=1.207;QD=20.68;ReadPosRankSum=-1.079 GT:AD:DP:GQ:PL 0/0:10,0:10:30.09:0,30,373 0/1:6,7:13:99:208,0,188 1/1:0,14:14:42.12:501,42,0 0/0:22,1:23:27.47:0,27,846 0/0:22,1:23:35.78:0,36,845 0/0:18,0:19:54.18:0,54,719 0/0:13,0:13:39.12:0,39,515 0/0:31,0:31:93.29:0,93,1211 0/0:21,0:21:60.19:0,60,758 0/0:13,0:13:39.11:0,39,468 0/0:16,0:16:48.15:0,48,598 1/1:0,10:10:30.09:366,30,0 0/1:5,6:11:99:155,0,109 0/1:4,15:19:86.35:479,0,86 0/0:43,0:43:99:0,123,1508 0/0:17,0:17:51.16:0,51,646 0/0:18,0:18:51.15:0,51,633 0/0:17,0:17:48.15:0,48,607 0/0:22,0:23:63.19:0,63,781 0/0:22,0:22:66.21:0,66,834 0/0:25,0:25:72.23:0,72,909 0/0:11,0:11:33.09:0,33,402 0/0:28,0:29:84.27:0,84,1116 0/0:13,0:13:39.13:0,39,530 0/0:21,0:21:63.20:0,63,844 0/0:21,0:21:63.20:0,63,820 0/0:15,0:15:45.13:0,45,554 0/0:21,0:21:63.20:0,63,789 0/0:12,0:12:36.09:0,36,440 0/0:15,0:15:45.14:0,45,567 0/0:14,0:14:42.14:0,42,538 0/0:29,0:29:87.25:0,87,1049 0/1:5,11:16:99:354,0,144 0/0:14,0:14:42.13:0,42,520 0/0:13,0:13:39.13:0,39,497 0/0:14,0:14:42.13:0,42,528 0/0:34,0:35:93.30:0,93,1199 0/0:26,0:26:78.24:0,78,951 0/1:11,7:18:99:165,0,348 0/0:20,0:20:57.18:0,57,721 0/0:12,0:12:36.11:0,36,436 0/0:19,0:20:57.17:0,57,707 12 124288264 . G A 4465.89 . AC=9;AF=0.107;AN=84;BaseQRankSum=12.717;DP=1544;Dels=0.00;FS=2.187;HRun=0;HaplotypeScore=0.7433;InbreedingCoeff=0.3778;MQ=59.03;MQ0=0;MQRankSum=0.148;QD=22.33;ReadPosRankSum=-0.803 GT:AD:DP:GQ:PL 0/0:18,0:18:51.10:0,51,533 0/1:15,19:34:99:589,0,327 1/1:0,30:30:87.27:1060,87,0 0/0:56,0:56:99:0,153,1778 0/0:57,0:57:99:0,168,1933 0/0:52,0:52:99:0,153,1768 0/0:43,0:43:99:0,126,1476 0/0:48,0:48:99:0,141,1635 0/0:36,0:36:99:0,108,1143 0/0:28,0:28:75.18:0,75,810 0/0:32,0:32:84.20:0,84,917 1/1:0,19:19:48.15:608,48,0 0/1:14,18:32:99:519,0,344 0/1:4,22:26:47.93:693,0,48 0/0:87,0:87:99:0,247,2622 0/0:30,0:30:87.22:0,87,941 0/0:31,0:31:90.20:0,90,940 0/0:26,0:26:78.20:0,78,838 0/0:45,0:45:99:0,120,1251 0/0:49,0:49:99:0,141,1528 0/0:55,0:55:99:0,159,1713 0/0:26,0:26:75.17:0,75,805 0/0:55,0:55:99:0,162,1922 0/0:46,0:46:99:0,129,1534 0/0:51,0:51:99:0,138,1650 0/0:34,0:34:93.27:0,93,1108 0/0:28,0:28:78.18:0,78,847 0/0:34,0:35:99:0,99,1064 0/0:21,0:21:57.15:0,57,627 0/0:35,0:35:99:0,105,1119 0/0:22,0:22:57.14:0,57,610 0/0:46,0:46:99:0,129,1398 0/1:19,19:38:99:545,0,488 0/0:27,0:27:78.16:0,78,828 0/0:21,0:21:63.16:0,63,680 0/0:28,0:28:84.17:0,84,884 0/0:47,0:47:99:0,129,1366 0/0:34,0:34:99:0,99,1074 0/1:7,14:21:99:451,0,155 0/0:33,0:33:90.20:0,90,949 0/0:29,0:29:84.22:0,84,926 0/0:33,0:33:90.24:0,90,1002 12 124325977 . T G 235288.72 . AC=80;AF=0.952;AN=84;BaseQRankSum=-4.296;DP=7213;DS;Dels=0.00;FS=15.857;HRun=0;HaplotypeScore=4.2472;InbreedingCoeff=-0.0500;MQ=59.40;MQ0=0;MQRankSum=0.468;QD=32.62;ReadPosRankSum=0.366 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4844,403,0 1/1:1,117:118:99:3981,311,0 1/1:0,144:144:99:4827,406,0 1/1:0,247:247:99:9118,713,0 1/1:0,234:234:99:8554,653,0 1/1:0,219:220:99:8318,632,0 1/1:0,198:198:99:7218,551,0 1/1:0,208:208:99:7674,593,0 1/1:0,139:139:99:4666,394,0 1/1:0,137:139:99:4690,397,0 1/1:0,178:178:99:5833,490,0 1/1:0,131:131:99:4400,373,0 1/1:0,108:108:99:3611,301,0 1/1:0,123:123:99:4174,352,0 1/1:0,250:250:99:8327,707,0 1/1:0,136:136:99:4516,379,0 1/1:0,146:146:99:4842,406,0 1/1:1,144:145:99:4877,412,0 1/1:0,230:230:99:7591,644,0 1/1:0,248:248:99:7877,653,0 1/1:1,243:245:99:7901,665,0 1/1:0,213:213:99:7065,593,0 1/1:0,244:244:99:8928,683,0 1/1:0,190:190:99:6854,527,0 1/1:1,227:229:99:8135,596,0 1/1:0,184:184:99:6587,503,0 1/1:0,112:112:99:3800,319,0 1/1:0,143:143:99:4707,394,0 1/1:0,112:112:99:3739,313,0 0/1:64,78:142:99:2123,0,1790 0/1:62,60:122:99:1696,0,1763 1/1:0,238:238:99:7794,650,0 1/1:0,197:197:99:6388,530,0 1/1:0,137:137:99:4630,388,0 1/1:0,165:165:99:5613,478,0 1/1:0,140:140:99:4565,379,0 1/1:1,237:238:99:7758,656,0 1/1:0,134:134:99:4497,382,0 1/1:0,132:132:99:4505,379,0 1/1:0,129:129:99:4386,364,0 0/1:59,59:118:99:1665,0,1782 0/1:88,72:161:99:2015,0,2609 12 124330189 . C T 758.46 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.519;DP=1165;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9722;InbreedingCoeff=-0.0244;MQ=59.17;MQ0=0;MQRankSum=0.207;QD=13.79;ReadPosRankSum=1.713 GT:AD:DP:GQ:PL 0/0:33,0:33:93.26:0,93,1066 0/0:16,0:16:45.09:0,45,494 0/1:11,13:24:99:407,0,285 0/0:47,0:47:99:0,135,1586 0/0:44,0:44:99:0,129,1518 0/0:46,0:46:99:0,129,1510 0/0:24,0:24:66.19:0,66,794 0/0:33,0:33:96.27:0,96,1135 0/0:16,0:16:48.11:0,48,531 0/0:21,0:21:60.17:0,60,694 0/0:19,0:19:57.16:0,57,650 0/0:13,0:13:36.09:0,36,402 0/0:18,0:18:42.09:0,42,462 0/0:27,0:27:75.21:0,75,859 0/0:62,0:62:99:0,180,1992 0/0:26,0:26:72.20:0,72,838 0/0:18,0:18:51.14:0,51,584 0/0:23,0:23:69.17:0,69,771 0/0:35,0:35:93.24:0,93,1052 0/0:44,0:44:99:0,120,1380 0/0:41,0:41:99:0,114,1307 0/0:21,0:21:60.12:0,60,658 0/0:51,0:52:99:0,138,1593 0/0:29,0:29:84.23:0,84,991 0/0:20,0:20:60.17:0,60,701 0/0:30,0:30:78.22:0,78,914 0/0:14,0:14:42.11:0,42,470 0/0:21,0:21:60.11:0,60,648 0/0:14,0:14:42.12:0,42,502 0/0:30,0:30:87.23:0,87,988 0/0:20,0:20:57.13:0,57,638 0/0:41,0:41:99:0,114,1318 0/0:17,0:17:51.13:0,51,579 0/0:25,0:25:72.19:0,72,814 0/0:20,0:20:60.16:0,60,674 0/1:17,14:31:99:413,0,468 0/0:46,0:47:99:0,117,1357 0/0:15,0:15:45.11:0,45,502 0/0:29,0:29:84.21:0,84,944 0/0:18,0:18:54.14:0,54,618 0/0:23,0:23:63.18:0,63,719 0/0:18,0:18:54.16:0,54,645 12 124330277 . A AG 285.89 . AC=10;AF=0.119;AN=84;BaseQRankSum=1.191;DP=2440;FS=831.762;HRun=2;HaplotypeScore=158.6942;InbreedingCoeff=-0.1818;MQ=58.45;MQ0=0;MQRankSum=0.535;QD=0.43;ReadPosRankSum=-11.856 GT:AD:DP:GQ:PL 0/0:51,0:51:27.93:0,28,929 0/1:58,0:58:82.76:83,0,788 0/0:42,0:42:0.93:6,0,499 0/0:45,22:67:1.27:0,1,878 0/1:62,0:62:25.69:26,0,671 0/0:52,0:52:17.76:0,18,704 0/0:37,0:37:56.73:0,57,695 0/0:45,0:45:63.76:0,64,838 0/1:30,19:49:88.94:89,0,607 0/0:52,0:52:64.59:0,65,908 0/1:43,0:43:43.96:44,0,565 0/0:34,1:35:3.45:0,3,349 0/0:36,0:36:72.27:0,72,894 0/1:51,0:51:12.87:13,0,636 0/1:154,0:154:22.52:23,0,2262 0/0:57,0:57:33.03:0,33,715 0/0:59,0:59:2.45:1,0,703 0/0:41,0:41:24.36:0,24,571 0/0:99,0:99:34.28:0,34,1467 0/0:77,16:93:99:0,148,1902 0/0:95,1:96:46.88:0,47,1442 0/0:58,0:58:63.67:0,64,1075 0/1:62,0:62:53.76:54,0,732 0/0:45,0:44:74.80:0,75,866 0/0:53,0:51:18.14:0,18,574 0/0:49,0:49:70.26:0,70,826 0/0:38,0:38:10.91:0,11,709 0/0:52,0:52:47.40:0,47,938 0/1:42,0:42:7.94:8,0,549 0/1:46,0:46:7.27:7,0,927 0/0:54,0:54:13.72:0,14,909 0/0:88,0:88:87.76:0,88,1865 0/0:54,0:54:20.27:0,20,791 0/0:50,0:50:78.98:0,79,1096 0/0:57,0:57:1.65:3,0,810 0/0:51,0:51:71.73:0,72,1014 0/1:87,8:95:69.23:69,0,1447 0/0:61,0:61:37.65:0,38,1038 0/0:54,0:54:62.07:0,62,1082 0/0:55,0:55:3.43:0,3,980 0/0:43,0:43:40.70:0,41,769 0/0:54,0:54:60.95:0,61,955 12 124330311 . C T 12961.91 . AC=17;AF=0.202;AN=84;BaseQRankSum=0.135;DP=2421;Dels=0.00;FS=10.425;HRun=0;HaplotypeScore=1.6590;InbreedingCoeff=0.0413;MQ=59.28;MQ0=0;MQRankSum=0.171;QD=17.28;ReadPosRankSum=-0.407 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,171,1953 0/0:53,0:53:99:0,153,1726 0/0:42,0:42:99:0,123,1427 0/1:33,33:66:99:925,0,979 0/1:30,35:65:99:1004,0,931 0/0:59,0:59:99:0,169,2140 0/1:32,28:60:99:825,0,960 0/0:56,0:56:99:0,156,1939 0/0:55,0:55:99:0,156,1824 0/0:41,0:41:99:0,120,1360 0/0:41,0:43:99:0,120,1340 0/0:37,0:38:99:0,102,1192 0/0:44,0:44:99:0,123,1402 0/1:24,23:47:99:677,0,684 0/0:159,0:160:99:0,454,5269 0/0:51,0:51:99:0,141,1611 0/0:49,0:49:99:0,144,1643 0/0:33,1:34:55.45:0,55,973 0/0:86,0:87:99:0,235,2673 0/0:82,0:82:99:0,241,2798 0/0:84,0:86:99:0,247,2769 0/0:58,0:59:99:0,171,1933 0/0:81,0:82:99:0,244,3081 0/1:24,21:45:99:605,0,742 0/0:59,0:59:99:0,172,2185 0/1:28,24:53:99:687,0,797 0/1:16,18:34:99:515,0,448 0/1:22,19:41:99:518,0,578 0/1:16,25:41:99:740,0,415 0/1:23,20:43:99:580,0,591 0/0:52,0:52:99:0,153,1762 0/0:64,0:64:99:0,174,1966 1/1:0,57:59:99:1979,169,0 0/1:20,28:49:99:771,0,535 1/1:1,51:53:99:1740,119,0 0/0:60,0:62:99:0,180,2084 0/0:102,0:102:99:0,283,3242 0/1:20,21:41:99:625,0,548 0/1:25,28:53:99:769,0,714 0/0:51,0:51:99:0,150,1717 0/0:45,0:45:99:0,129,1455 0/0:56,0:56:99:0,156,1779 12 124337772 . C T 1148.73 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.616;DP=948;Dels=0.00;FS=4.010;HRun=0;HaplotypeScore=0.3390;InbreedingCoeff=-0.0281;MQ=59.12;MQ0=0;MQRankSum=1.533;QD=13.84;ReadPosRankSum=-0.200 GT:AD:DP:GQ:PL 0/0:16,0:16:36.10:0,36,433 0/0:20,0:20:54.15:0,54,641 0/0:21,0:21:54.16:0,54,669 0/0:27,0:27:69.20:0,69,900 0/0:21,0:21:57.17:0,57,721 0/0:9,0:9:24.07:0,24,305 0/0:18,0:18:39.12:0,39,512 0/0:12,1:13:3.87:0,4,416 0/0:29,0:29:81.20:0,81,933 0/0:20,0:20:54.14:0,54,628 0/0:13,0:13:33.10:0,33,397 0/0:14,0:14:39.08:0,39,447 0/0:17,0:17:39.12:0,39,489 0/0:22,0:22:63.18:0,63,741 0/1:30,30:60:99:774,0,791 0/0:19,0:19:48.15:0,48,592 0/1:8,15:23:99:437,0,177 0/0:16,0:16:42.12:0,42,507 0/0:28,0:28:63.19:0,63,791 0/0:61,0:61:99:0,150,1864 0/0:46,0:47:99:0,123,1438 0/0:27,0:27:75.21:0,75,889 0/0:26,0:26:75.24:0,75,969 0/0:13,0:13:33.11:0,33,443 0/0:16,0:16:42.14:0,42,559 0/0:19,0:19:45.15:0,45,610 0/0:16,0:16:48.14:0,48,564 0/0:15,0:15:39.11:0,39,467 0/0:14,0:14:39.11:0,39,456 0/0:21,0:21:51.14:0,51,618 0/0:13,0:13:39.10:0,39,443 0/0:41,0:41:99:0,108,1287 0/0:25,0:25:66.18:0,66,777 0/0:14,0:14:39.10:0,39,451 0/0:17,0:17:42.12:0,42,505 0/0:30,0:30:72.22:0,72,882 0/0:41,0:41:96.28:0,96,1181 0/0:21,0:21:57.16:0,57,686 0/0:11,0:11:33.10:0,33,392 0/0:20,0:20:48.14:0,48,599 0/0:14,0:14:39.11:0,39,467 0/0:20,0:20:60.18:0,60,708 12 124337866 . T G 245.18 . AC=11;AF=0.131;AN=84;BaseQRankSum=-15.930;DP=899;Dels=0.00;FS=575.621;HRun=2;HaplotypeScore=0.6380;InbreedingCoeff=-0.1903;MQ=58.42;MQ0=0;MQRankSum=-0.023;QD=0.93;ReadPosRankSum=-13.208 GT:AD:DP:GQ:PL 0/0:10,5:15:3.48:0,3,342 0/0:11,4:15:29.46:0,29,340 0/0:17,7:24:18.04:0,18,590 0/0:19,8:27:22.82:0,23,632 0/1:15,11:26:28.66:29,0,497 0/0:7,8:15:0.97:0,1,220 0/1:10,11:21:49.59:50,0,254 0/1:10,13:23:38.89:39,0,341 0/0:20,3:23:57.17:0,57,681 0/0:11,3:14:0.86:0,1,364 0/0:10,2:12:27.08:0,27,326 0/0:12,5:17:8.52:0,9,400 0/0:11,2:13:33.10:0,33,399 0/0:9,4:13:27.08:0,27,327 0/1:42,26:68:65.52:66,0,1354 0/0:8,6:14:20.10:0,20,205 0/0:12,7:19:11.40:0,11,323 0/0:12,6:18:34.35:0,34,400 0/1:19,9:28:12.38:12,0,534 0/0:28,7:35:29.24:0,29,961 0/0:33,7:40:90.28:0,90,1109 0/1:13,10:23:41.60:42,0,426 0/0:19,17:36:6.88:0,7,649 0/1:11,11:22:41.64:42,0,341 0/0:16,10:26:25.33:0,25,547 0/0:11,10:21:32.32:0,32,388 0/0:12,3:15:33.08:0,33,384 0/0:15,4:19:41.02:0,41,446 0/1:6,4:10:38.02:38,0,174 0/0:8,3:11:0.40:0,0,263 0/0:13,3:16:10.58:0,11,441 0/0:26,8:34:78.23:0,78,933 0/0:21,6:27:25.09:0,25,601 0/0:10,3:13:30.09:0,30,374 0/0:10,3:14:1.18:0,1,277 0/1:11,8:20:0.33:0,0,334 0/0:18,8:26:2.29:0,2,560 0/0:9,7:16:27.08:0,27,328 0/1:5,6:11:35.26:35,0,151 0/1:9,4:13:20.19:20,0,301 0/0:15,7:22:45.01:0,45,530 0/0:17,7:24:24.43:0,24,569 12 124352505 . T A 683.57 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.832;DP=1460;Dels=0.00;FS=14.992;HRun=0;HaplotypeScore=0.5366;InbreedingCoeff=-0.0244;MQ=58.98;MQ0=1;MQRankSum=1.095;QD=12.21;ReadPosRankSum=-0.098 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,105,1346 0/0:26,0:26:72.22:0,72,891 0/0:23,0:23:69.20:0,69,843 0/0:51,1:52:99:0,135,1765 0/0:52,0:52:99:0,135,1785 0/0:42,0:42:99:0,114,1469 0/0:39,0:39:99:0,102,1336 0/0:44,0:44:99:0,120,1542 0/0:26,0:26:72.22:0,72,904 0/0:38,0:38:99:0,108,1336 0/0:20,0:20:60.19:0,60,757 0/1:12,13:25:99:349,0,353 0/1:16,15:31:99:397,0,512 0/0:25,0:25:72.23:0,72,903 0/0:81,0:81:99:0,211,2672 0/0:28,0:28:72.23:0,72,910 0/0:37,0:37:99:0,99,1260 0/0:27,0:27:78.24:0,78,963 0/0:64,0:64:99:0,169,2105 0/0:49,0:49:99:0,135,1678 0/0:63,0:64:99:0,160,2065 0/0:34,0:34:96.30:0,96,1199 0/0:60,0:61:99:0,157,2056 0/0:21,0:21:60.16:0,60,749 0/0:37,0:37:90.30:0,90,1217 0/0:23,0:23:60.19:0,60,774 0/0:21,0:21:60.15:0,60,720 0/0:19,0:19:54.17:0,54,687 0/0:29,0:29:84.26:0,84,1057 0/0:26,0:26:78.24:0,78,970 0/0:24,0:24:72.23:0,72,900 0/0:33,0:33:90.28:0,90,1132 0/0:34,0:34:96.27:0,96,1183 0/0:22,0:22:60.19:0,60,750 0/0:24,0:24:63.20:0,63,805 0/0:27,0:27:75.22:0,75,936 0/0:50,0:50:99:0,147,1832 0/0:33,0:33:99:0,99,1211 0/0:29,0:29:84.26:0,84,1046 0/0:29,0:29:84.27:0,84,1059 0/0:30,0:30:81.26:0,81,1029 0/0:22,0:22:60.19:0,60,757 12 124352590 . C T 606.02 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.493;DP=1568;Dels=0.00;FS=3.812;HRun=0;HaplotypeScore=0.7863;InbreedingCoeff=-0.0244;MQ=59.28;MQ0=0;MQRankSum=0.458;QD=12.37;ReadPosRankSum=0.050 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,102,1154 0/0:38,0:38:99:0,105,1207 0/0:34,0:34:96.26:0,96,1108 0/0:58,0:58:99:0,153,1939 0/0:49,0:49:99:0,135,1734 0/0:52,0:52:99:0,141,1798 0/0:39,0:39:99:0,102,1300 0/0:41,0:41:99:0,120,1494 0/0:30,0:30:84.24:0,84,986 0/0:41,0:41:99:0,111,1271 0/0:29,0:29:87.22:0,87,980 0/1:7,14:21:99:413,0,156 0/1:17,11:28:99:255,0,442 0/0:20,0:20:60.16:0,60,678 0/0:75,0:75:99:0,196,2273 0/0:26,0:26:72.19:0,72,825 0/0:27,0:27:81.20:0,81,893 0/0:31,0:31:90.22:0,90,1013 0/0:76,0:76:99:0,202,2300 0/0:74,0:74:99:0,190,2262 0/0:43,0:43:99:0,129,1488 0/0:35,0:35:96.28:0,96,1129 0/0:48,0:48:99:0,129,1660 0/0:35,0:35:96.30:0,96,1232 0/0:41,0:41:99:0,99,1301 0/0:38,0:38:99:0,108,1384 0/0:24,0:24:69.17:0,69,778 0/0:27,0:27:78.22:0,78,912 0/0:25,0:25:72.19:0,72,822 0/0:34,0:34:96.26:0,96,1104 0/0:21,0:21:60.17:0,60,701 0/0:50,0:50:99:0,132,1597 0/0:20,0:20:51.15:0,51,605 0/0:31,0:31:90.24:0,90,1013 0/0:24,0:24:63.17:0,63,716 0/0:42,0:42:99:0,117,1341 0/0:38,0:38:93.27:0,93,1104 0/0:36,0:36:99:0,99,1140 0/0:38,0:38:99:0,111,1256 0/0:40,0:40:99:0,111,1255 0/0:20,0:20:57.12:0,57,630 0/0:31,1:32:90.25:0,90,1042 12 124362308 . T G 54.36 . AC=2;AF=0.024;AN=84;BaseQRankSum=-14.261;DP=1774;Dels=0.00;FS=2.081;HRun=1;HaplotypeScore=0.7829;InbreedingCoeff=-0.0277;MQ=59.10;MQ0=0;MQRankSum=-0.363;QD=0.77;ReadPosRankSum=-2.811 GT:AD:DP:GQ:PL 0/0:28,1:29:72.20:0,72,819 0/0:17,2:19:42.11:0,42,455 0/1:21,9:30:32.63:33,0,485 0/0:64,12:76:99:0,162,1691 0/0:59,13:72:99:0,153,1589 0/0:56,5:61:99:0,141,1553 0/0:54,4:58:99:0,132,1376 0/0:48,3:51:99:0,108,1152 0/0:20,9:29:37.46:0,37,613 0/0:27,3:30:72.17:0,72,788 0/0:27,5:32:69.16:0,69,739 0/0:26,6:32:48.48:0,48,743 0/0:19,4:23:48.09:0,48,496 0/0:24,9:33:60.13:0,60,642 0/0:86,30:116:93.71:0,94,1898 0/0:20,3:23:42.08:0,42,439 0/0:30,6:36:81.20:0,81,895 0/0:27,6:33:75.19:0,75,829 0/1:22,19:41:83.95:84,0,458 0/0:65,4:69:99:0,177,1903 0/0:23,14:37:35.46:0,35,591 0/0:41,7:48:99:0,102,1103 0/0:62,16:78:99:0,99,1592 0/0:38,5:43:99:0,102,1071 0/0:58,4:62:99:0,144,1483 0/0:38,4:42:99:0,105,1126 0/0:24,2:26:57.09:0,57,604 0/0:28,7:35:66.16:0,66,717 0/0:24,6:30:42.53:0,43,709 0/0:28,4:32:51.46:0,51,783 0/0:31,4:35:78.19:0,78,857 0/0:45,7:52:99:0,129,1335 0/0:30,5:35:84.16:0,84,883 0/0:29,4:33:48.43:0,48,709 0/0:25,5:30:72.15:0,72,774 0/0:21,4:25:57.11:0,57,611 0/0:37,21:59:4.45:0,4,865 0/0:30,5:35:75.21:0,75,847 0/0:34,3:38:66.48:0,66,912 0/0:31,5:36:75.16:0,75,803 0/0:29,4:33:69.13:0,69,755 0/0:34,3:37:90.19:0,90,959 12 124387574 . G A 3801.66 . AC=13;AF=0.155;AN=84;BaseQRankSum=-8.835;DP=778;Dels=0.00;FS=1.160;HRun=1;HaplotypeScore=0.4466;InbreedingCoeff=-0.1834;MQ=58.53;MQ0=0;MQRankSum=-0.681;QD=15.33;ReadPosRankSum=2.458 GT:AD:DP:GQ:PL 0/1:9,8:17:99:249,0,284 0/0:10,0:10:30.08:0,30,363 0/1:8,6:14:99:182,0,257 0/0:34,0:34:96.31:0,96,1277 0/0:22,0:22:57.19:0,57,771 0/0:21,0:21:54.17:0,54,728 0/0:10,0:10:30.10:0,30,411 0/0:11,0:11:33.11:0,33,446 0/0:12,0:12:33.10:0,33,409 0/1:6,7:13:99:207,0,182 0/1:5,10:15:99:285,0,145 0/1:5,7:12:99:185,0,145 0/1:12,7:19:99:187,0,395 0/0:11,0:11:33.10:0,33,412 0/0:59,0:59:99:0,156,2016 0/0:12,0:12:36.11:0,36,449 0/0:23,0:23:66.21:0,66,836 0/1:10,9:19:99:271,0,313 0/0:26,0:26:66.21:0,66,846 0/1:11,18:29:99:531,0,322 0/0:23,0:23:69.20:0,69,848 0/0:19,0:19:57.17:0,57,703 0/1:14,11:25:99:338,0,481 0/0:7,0:7:21.07:0,21,286 0/0:8,0:8:24.06:0,24,302 0/0:14,0:14:39.13:0,39,530 0/0:9,0:9:27.08:0,27,343 0/0:14,0:14:39.12:0,39,488 0/0:13,0:13:39.12:0,39,491 0/0:22,0:22:66.21:0,66,830 0/0:13,0:13:39.12:0,39,484 0/1:11,14:25:99:413,0,289 0/0:22,0:22:63.17:0,63,780 0/0:14,0:14:39.12:0,39,491 0/0:22,1:23:30.95:0,31,749 0/1:6,3:9:83.50:84,0,202 0/1:12,22:34:99:631,0,274 0/1:9,8:17:99:237,0,268 0/0:24,0:24:66.19:0,66,810 0/0:20,0:20:60.19:0,60,761 0/0:22,0:22:63.19:0,63,773 0/0:12,0:12:36.10:0,36,450 12 124387586 . A G 3872.37 . AC=13;AF=0.155;AN=84;BaseQRankSum=-7.064;DP=857;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.5429;InbreedingCoeff=-0.1834;MQ=58.43;MQ0=0;MQRankSum=2.374;QD=13.98;ReadPosRankSum=-0.408 GT:AD:DP:GQ:PL 0/1:10,9:19:99:220,0,305 0/0:12,0:12:36.10:0,36,428 0/1:8,4:12:93.88:94,0,259 0/0:36,0:36:99:0,102,1268 0/0:24,0:24:66.20:0,66,812 0/0:21,0:21:48.15:0,48,609 0/0:13,0:13:33.11:0,33,434 0/0:16,0:16:39.12:0,39,497 0/0:11,0:11:30.09:0,30,372 0/1:7,6:13:99:142,0,219 0/1:6,11:17:99:263,0,177 0/1:8,7:15:99:173,0,216 0/1:12,10:22:99:245,0,377 0/0:11,0:11:33.10:0,33,406 0/0:60,0:60:99:0,150,1881 0/0:15,0:15:42.12:0,42,503 0/0:19,0:19:54.16:0,54,644 0/1:6,11:17:99:326,0,170 0/0:35,0:35:99:0,99,1193 0/1:10,20:30:99:589,0,285 0/0:26,0:26:75.22:0,75,920 0/0:15,0:15:42.13:0,42,521 0/1:17,14:31:99:382,0,533 0/0:7,0:7:21.07:0,21,267 0/0:10,0:10:30.09:0,30,369 0/0:14,0:14:36.11:0,36,459 0/0:11,0:11:33.09:0,33,399 0/0:15,0:15:42.13:0,42,508 0/0:19,0:19:51.15:0,51,632 0/0:25,0:25:72.22:0,72,871 0/0:17,0:17:51.16:0,51,630 0/1:13,17:30:99:457,0,354 0/0:30,0:30:78.24:0,78,975 0/0:19,0:19:51.16:0,51,633 0/0:19,1:20:23.72:0,24,613 0/1:11,4:15:95.58:96,0,325 0/1:14,24:38:99:609,0,358 0/1:8,10:18:99:277,0,236 0/0:29,0:29:78.24:0,78,943 0/0:17,0:17:48.15:0,48,598 0/0:20,0:20:57.18:0,57,706 0/0:13,0:13:39.12:0,39,482 12 124417889 . C T 5431.38 . AC=29;AF=0.345;AN=84;BaseQRankSum=-7.244;DP=615;Dels=0.00;FS=3.053;HRun=0;HaplotypeScore=0.6010;InbreedingCoeff=0.0980;MQ=58.55;MQ0=0;MQRankSum=0.622;QD=17.30;ReadPosRankSum=-0.803 GT:AD:DP:GQ:PL 0/1:9,2:11:39.14:39,0,281 0/0:11,0:11:30.07:0,30,367 0/1:10,6:16:99:162,0,300 0/1:6,9:15:99:254,0,156 0/1:3,8:11:76.08:245,0,76 0/0:9,0:9:24.06:0,24,305 0/1:4,3:7:81.31:81,0,107 0/1:6,8:14:99:214,0,203 0/1:3,3:6:48.86:49,0,92 0/0:17,0:17:42.12:0,42,512 1/1:0,10:11:30.09:359,30,0 0/0:6,0:6:15.04:0,15,177 0/1:7,1:8:11.18:11,0,229 0/0:13,0:13:39.08:0,39,441 0/0:40,0:40:99:0,108,1347 0/0:19,0:19:54.15:0,54,638 0/0:18,0:18:45.14:0,45,554 1/1:0,12:12:36.10:407,36,0 0/1:21,11:32:99:285,0,638 0/0:22,0:22:57.16:0,57,684 0/0:17,0:18:48.13:0,48,575 0/0:19,0:19:51.12:0,51,595 0/1:8,6:14:99:156,0,270 0/0:3,0:3:6.02:0,6,78 0/0:15,0:15:42.14:0,42,558 0/1:2,3:5:62.58:82,0,63 0/1:4,8:12:99:213,0,113 0/1:8,7:15:99:184,0,245 0/1:6,9:15:99:253,0,168 0/1:7,8:15:99:236,0,170 0/1:10,6:16:99:166,0,296 0/0:25,0:25:69.19:0,69,834 0/0:16,0:16:48.14:0,48,582 1/1:0,12:12:33.10:396,33,0 1/1:0,14:14:42.12:491,42,0 1/1:0,13:13:39.11:458,39,0 0/1:16,7:24:99:155,0,445 1/1:0,16:16:45.13:535,45,0 0/0:16,0:16:42.12:0,42,505 0/0:17,0:17:51.15:0,51,617 0/0:7,0:7:21.07:0,21,261 0/0:10,0:10:30.09:0,30,351 12 124417973 . C T 527.33 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.790;DP=1691;Dels=0.00;FS=1.069;HRun=0;HaplotypeScore=1.9393;InbreedingCoeff=-0.0120;MQ=58.53;MQ0=0;MQRankSum=0.634;QD=15.07;ReadPosRankSum=1.579 GT:AD:DP:GQ:PL 0/0:37,0:37:96.26:0,96,1132 0/0:28,0:28:84.22:0,84,973 0/0:39,0:39:99:0,105,1246 0/0:53,0:53:99:0,150,1875 0/0:38,0:38:99:0,102,1328 0/0:28,0:28:72.21:0,72,919 0/0:21,0:21:57.16:0,57,704 0/0:36,0:36:99:0,102,1293 0/0:36,0:36:90.25:0,90,1075 0/0:24,0:24:63.19:0,63,750 0/0:35,0:35:99:0,102,1205 0/0:42,0:42:99:0,108,1310 0/0:35,0:35:93.25:0,93,1103 0/0:33,0:33:81.25:0,81,983 0/0:106,2:108:99:0,219,3248 0/0:40,0:40:99:0,114,1363 0/1:15,19:35:99:574,0,399 0/0:40,0:40:99:0,114,1351 0/0:69,0:71:99:0,196,2250 0/0:81,0:81:99:0,223,2672 0/0:59,0:59:99:0,162,1897 0/0:42,0:42:99:0,111,1334 0/0:29,0:29:78.22:0,78,1006 0/0:26,0:26:69.20:0,69,889 0/0:18,0:18:45.13:0,45,552 0/0:25,0:25:69.22:0,69,880 0/0:25,1:26:66.20:0,66,804 0/0:29,0:29:69.19:0,69,809 0/0:18,0:18:54.16:0,54,639 0/0:50,0:51:99:0,129,1509 0/0:32,0:32:84.24:0,84,993 0/0:57,0:57:99:0,159,1909 0/0:61,0:61:99:0,162,1879 0/0:24,0:24:66.20:0,66,792 0/0:38,0:39:99:0,102,1233 0/0:47,0:47:99:0,132,1580 0/0:49,0:49:99:0,132,1531 0/0:60,0:60:99:0,168,1969 0/0:28,0:28:78.22:0,78,909 0/0:42,0:42:99:0,111,1335 0/0:35,0:35:96.26:0,96,1121 0/0:34,0:34:96.26:0,96,1113 12 124428018 . T TG 26.29 . AC=4;AF=0.048;AN=84;BaseQRankSum=-6.110;DP=4849;DS;FS=2675.147;HRun=1;HaplotypeScore=318.1747;InbreedingCoeff=-0.0708;MQ=59.03;MQ0=0;MQRankSum=-1.225;QD=0.06;ReadPosRankSum=-22.553 GT:AD:DP:GQ:PL 0/0:81,0:81:41.99:0,42,1967 0/1:92,0:92:25.41:25,0,1707 0/0:69,0:69:1.06:6,0,1252 0/0:213,0:213:99:0,159,4752 0/0:186,0:186:99:0,111,4198 0/0:170,0:165:99:0,244,4248 0/0:142,0:137:79.85:0,80,3063 0/0:138,0:133:95.35:0,95,3400 0/0:80,0:80:66.90:0,67,1841 0/0:90,0:90:68.65:0,69,1951 0/0:68,10:78:77.71:0,78,1893 0/0:105,0:105:89.77:0,90,2366 0/0:77,0:77:67.74:0,68,1974 0/0:68,0:68:40.59:0,41,1532 0/0:241,0:241:99:0,204,5788 0/0:99,0:98:87.80:0,88,2260 0/0:83,0:82:49.60:0,50,1661 0/0:80,0:80:15.90:0,16,1687 0/1:143,0:143:61.80:62,0,2865 0/0:206,0:205:99:0,287,5026 0/0:190,0:190:99:0,290,4649 0/0:120,0:120:72.78:0,73,2670 0/0:207,0:206:24.09:0,24,4494 0/0:133,0:131:99:0,144,2939 0/0:149,0:145:99:0,119,3547 0/0:154,0:152:74.53:0,75,3508 0/0:65,0:65:76.49:0,76,1437 0/0:58,0:58:47.44:0,47,1444 0/0:58,0:58:94.36:0,94,1287 0/0:85,0:85:52.34:0,52,2146 0/0:66,0:66:71.43:0,71,1461 0/0:199,0:199:99:0,178,4430 0/0:118,0:118:0.88:7,0,2540 0/1:86,0:85:14.07:14,0,1737 0/0:59,0:59:69.35:0,69,1323 0/1:88,0:88:14.25:14,0,1692 0/0:164,0:165:99:0,124,4038 0/0:89,0:89:95.99:0,96,2112 0/0:82,0:82:49.77:0,50,2028 0/0:83,0:83:40.12:0,40,1669 0/0:75,0:75:99:0,103,1873 0/0:79,0:79:41.69:0,42,1804 12 124824869 . G A 155.81 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.606;DP=1037;Dels=0.00;FS=5.794;HRun=0;HaplotypeScore=0.7758;InbreedingCoeff=-0.0121;MQ=58.50;MQ0=0;MQRankSum=-0.426;QD=11.99;ReadPosRankSum=-0.787 GT:AD:DP:GQ:PL 0/0:20,0:20:57.14:0,57,614 0/0:24,0:24:69.16:0,69,756 0/0:18,0:18:45.09:0,45,496 0/0:42,0:42:99:0,105,1334 0/0:48,0:48:99:0,138,1681 0/0:18,0:18:45.14:0,45,571 0/0:18,0:18:54.13:0,54,640 0/0:19,0:19:54.17:0,54,677 0/0:15,0:15:39.10:0,39,443 0/0:27,0:27:69.19:0,69,799 0/0:15,0:15:39.11:0,39,452 0/0:19,0:19:54.12:0,54,595 0/1:5,8:13:95.95:202,0,96 0/0:24,0:24:72.19:0,72,789 0/0:63,0:63:99:0,174,1962 0/0:22,0:22:66.17:0,66,732 0/0:27,0:27:72.17:0,72,806 0/0:10,0:10:30.08:0,30,325 0/0:38,0:38:99:0,105,1194 0/0:35,0:35:99:0,99,1128 0/0:34,0:34:93.25:0,93,1063 0/0:18,0:18:51.13:0,51,571 0/0:45,0:45:99:0,132,1638 0/0:12,0:12:27.08:0,27,320 0/0:29,0:29:78.23:0,78,944 0/0:25,0:25:66.18:0,66,802 0/0:23,0:23:63.14:0,63,696 0/0:21,0:21:63.15:0,63,701 0/0:16,0:16:48.13:0,48,528 0/0:15,1:16:23.43:0,23,440 0/0:28,0:28:75.19:0,75,838 0/0:38,0:38:99:0,102,1171 0/0:25,0:25:75.17:0,75,821 0/0:14,0:14:39.10:0,39,427 0/0:24,0:24:69.16:0,69,735 0/0:20,0:20:60.15:0,60,649 0/0:27,0:27:75.18:0,75,837 0/0:21,0:21:63.16:0,63,679 0/0:22,0:22:63.16:0,63,700 0/0:18,0:18:54.12:0,54,578 0/0:20,0:20:57.15:0,57,639 0/0:26,0:26:72.19:0,72,802 12 124827726 . C T 345.57 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.488;DP=1452;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.0338;InbreedingCoeff=-0.0244;MQ=59.07;MQ0=0;MQRankSum=0.476;QD=9.34;ReadPosRankSum=-0.176 GT:AD:DP:GQ:PL 0/0:24,0:24:69.17:0,69,772 0/0:24,0:24:66.16:0,66,726 0/0:23,0:23:60.16:0,60,688 0/0:91,0:91:99:0,226,2793 0/0:75,0:75:99:0,211,2591 0/0:63,0:63:99:0,150,1851 0/0:40,0:40:96.30:0,96,1234 0/0:42,0:42:99:0,111,1357 0/0:24,0:24:66.18:0,66,760 0/0:14,0:14:39.09:0,39,428 0/0:28,0:28:75.21:0,75,885 0/1:10,8:18:99:204,0,260 0/1:12,7:19:99:204,0,302 0/0:21,0:21:57.15:0,57,657 0/0:77,0:77:99:0,199,2275 0/0:22,0:22:60.16:0,60,679 0/0:30,0:30:75.19:0,75,868 0/0:27,0:27:75.20:0,75,869 0/0:42,0:42:99:0,117,1350 0/0:50,0:50:99:0,132,1535 0/0:38,0:38:99:0,99,1119 0/0:33,0:33:78.20:0,78,886 0/0:89,0:89:99:0,223,2787 0/0:25,0:25:75.23:0,75,918 0/0:28,0:28:69.21:0,69,860 0/0:26,0:26:72.22:0,72,901 0/0:16,0:16:48.12:0,48,540 0/0:29,0:29:78.21:0,78,903 0/0:19,0:19:51.13:0,51,581 0/0:20,0:20:54.14:0,54,606 0/0:27,0:27:78.17:0,78,849 0/0:45,0:45:99:0,117,1385 0/0:40,0:40:99:0,114,1275 0/0:20,0:20:57.15:0,57,646 0/0:41,0:41:99:0,114,1306 0/0:28,0:28:84.21:0,84,942 0/0:42,0:42:99:0,111,1328 0/0:25,0:25:72.20:0,72,831 0/0:40,0:40:99:0,114,1306 0/0:24,0:24:72.18:0,72,792 0/0:25,0:25:72.18:0,72,794 0/0:18,0:18:54.13:0,54,599 12 124957627 . C T 7345.06 . AC=9;AF=0.107;AN=84;BaseQRankSum=8.823;DP=2415;Dels=0.00;FS=2.981;HRun=0;HaplotypeScore=2.2557;InbreedingCoeff=-0.1200;MQ=59.35;MQ0=0;MQRankSum=0.373;QD=14.02;ReadPosRankSum=1.269 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,108,1137 0/0:44,0:44:99:0,132,1439 0/0:39,0:39:99:0,111,1207 0/0:139,1:140:99:0,357,4444 0/0:122,0:122:99:0,337,3909 0/1:54,36:90:99:908,0,1487 0/1:32,49:81:99:1309,0,903 0/0:78,0:78:99:0,207,2358 0/0:36,0:36:93.25:0,93,1047 0/0:27,0:28:78.16:0,78,812 0/0:46,0:46:99:0,117,1288 0/0:31,0:31:87.22:0,87,937 0/0:32,0:32:84.23:0,84,963 0/0:38,0:38:99:0,102,1113 0/0:157,1:158:99:0,421,4738 0/0:46,0:46:99:0,132,1390 0/0:45,0:45:99:0,123,1331 0/0:25,0:25:69.17:0,69,747 0/0:71,0:71:99:0,192,2077 0/1:41,50:93:99:1393,0,987 0/0:70,0:72:99:0,189,2043 0/0:43,0:43:99:0,120,1295 0/0:151,0:151:99:0,430,5038 0/0:79,0:79:99:0,210,2433 0/0:72,0:72:99:0,196,2271 0/0:67,0:68:99:0,174,1979 0/1:18,16:34:99:420,0,480 0/1:16,26:42:99:723,0,365 0/1:14,11:25:99:305,0,366 0/1:24,26:50:99:732,0,580 0/1:19,23:42:99:623,0,418 0/1:31,35:67:99:931,0,719 0/0:46,0:46:99:0,126,1381 0/0:37,0:37:99:0,99,1086 0/0:36,0:36:93.22:0,93,1006 0/0:39,0:39:99:0,105,1156 0/0:55,0:55:99:0,153,1616 0/0:35,1:36:75.65:0,76,1109 0/0:31,0:31:90.23:0,90,980 0/0:32,0:32:87.23:0,87,984 0/0:32,0:32:90.23:0,90,983 0/0:42,0:42:99:0,114,1262 12 124957673 . C T 474.14 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.871;DP=1688;Dels=0.00;FS=5.707;HRun=0;HaplotypeScore=1.3835;InbreedingCoeff=-0.0124;MQ=59.06;MQ0=0;MQRankSum=-0.589;QD=16.35;ReadPosRankSum=0.371 GT:AD:DP:GQ:PL 0/0:26,0:26:72.19:0,72,793 0/0:33,0:33:93.24:0,93,1034 0/0:29,0:29:81.21:0,81,899 0/0:87,0:87:99:0,235,2781 0/0:83,0:83:99:0,235,2744 0/0:57,0:57:99:0,153,1826 0/0:48,0:48:99:0,123,1447 0/0:50,0:50:99:0,135,1589 0/0:18,1:19:14.98:0,15,486 0/0:36,0:36:96.20:0,96,1025 0/0:24,0:24:69.17:0,69,761 0/0:24,0:24:66.16:0,66,704 0/1:10,19:29:99:520,0,216 0/0:27,0:27:78.19:0,78,843 0/0:93,0:93:99:0,250,2757 0/0:34,0:34:99:0,99,1061 0/0:38,0:38:99:0,99,1122 0/0:28,0:28:78.17:0,78,833 0/0:42,0:43:99:0,114,1242 0/0:60,0:60:99:0,165,1854 0/0:54,0:54:99:0,141,1605 0/0:39,0:39:99:0,114,1251 0/0:111,0:111:99:0,298,3565 0/0:53,0:53:99:0,150,1739 0/0:59,0:60:99:0,153,1840 0/0:41,0:41:99:0,102,1185 0/0:25,0:25:72.17:0,72,774 0/0:27,0:27:81.20:0,81,861 0/0:20,0:20:54.12:0,54,586 0/0:35,0:35:99:0,105,1132 0/0:32,0:32:93.23:0,93,1000 0/0:51,0:51:99:0,129,1426 0/0:31,1:32:51.66:0,52,925 0/0:15,0:15:45.12:0,45,500 0/0:30,0:30:84.19:0,84,888 0/0:25,0:25:69.14:0,69,756 0/0:30,0:30:87.22:0,87,948 0/0:24,0:24:66.12:0,66,682 0/0:35,1:36:54.08:0,54,923 0/0:29,0:29:75.20:0,75,840 0/0:18,0:18:48.13:0,48,535 0/0:33,0:33:93.21:0,93,1024 12 125294810 . C T 665.88 . AC=1;AF=0.012;AN=84;BaseQRankSum=-7.424;DP=2474;Dels=0.00;FS=10.368;HRun=0;HaplotypeScore=1.2603;InbreedingCoeff=-0.0120;MQ=58.96;MQ0=0;MQRankSum=2.862;QD=13.32;ReadPosRankSum=-1.452 GT:AD:DP:GQ:PL 0/0:63,0:64:99:0,163,2097 0/0:41,0:41:99:0,108,1384 0/0:51,0:51:99:0,138,1777 0/0:79,0:79:99:0,205,2793 0/0:65,0:65:99:0,184,2480 0/0:78,0:78:99:0,199,2710 0/0:54,0:54:99:0,141,1883 0/0:55,0:55:99:0,147,1977 0/0:54,0:54:99:0,132,1723 0/0:37,0:37:99:0,105,1291 0/0:54,0:54:99:0,141,1813 0/0:41,0:41:99:0,114,1467 0/0:54,0:54:99:0,138,1784 0/0:59,0:59:99:0,159,2021 0/0:187,0:188:99:0,436,5655 0/0:46,0:47:99:0,123,1549 0/0:48,0:48:99:0,135,1725 0/0:45,0:45:99:0,126,1635 0/0:83,0:83:99:0,211,2699 0/0:83,0:83:99:0,211,2698 0/0:80,1:82:99:0,157,2405 0/0:55,0:55:99:0,150,1921 0/0:95,0:95:99:0,250,3450 0/0:63,0:63:99:0,166,2306 0/0:73,0:73:99:0,196,2683 0/0:64,0:64:99:0,169,2279 0/0:28,0:28:78.25:0,78,996 0/0:44,0:44:99:0,117,1490 0/0:37,0:37:99:0,105,1314 0/0:42,0:42:99:0,102,1304 0/0:45,0:45:99:0,129,1608 0/0:87,0:87:99:0,202,2668 0/1:22,28:50:99:712,0,654 0/0:50,0:50:99:0,138,1768 0/0:43,0:43:99:0,111,1437 0/0:45,0:45:99:0,114,1487 0/0:70,0:70:99:0,178,2263 0/0:42,0:42:99:0,114,1443 0/0:47,0:47:99:0,132,1669 0/0:42,0:42:99:0,114,1440 0/0:38,0:38:99:0,105,1328 0/0:52,0:52:99:0,135,1745 12 125434580 . C T 13156.01 . AC=48;AF=0.571;AN=84;BaseQRankSum=5.932;DP=754;Dels=0.00;FS=3.081;HRun=0;HaplotypeScore=0.4895;InbreedingCoeff=0.1600;MQ=58.77;MQ0=0;MQRankSum=1.444;QD=22.80;ReadPosRankSum=-1.117 GT:AD:DP:GQ:PL 1/1:0,15:15:45.14:552,45,0 1/1:0,8:8:21.07:267,21,0 1/1:0,19:19:54.17:674,54,0 0/1:22,11:33:99:286,0,653 1/1:0,30:30:81.26:1047,81,0 0/1:10,7:17:99:173,0,270 0/0:17,0:17:36.11:0,36,467 1/1:0,18:18:42.13:547,42,0 0/0:11,0:11:33.09:0,33,365 0/0:12,0:12:36.08:0,36,396 0/1:2,5:7:53.76:139,0,54 0/1:8,8:16:99:244,0,189 1/1:0,16:16:42.13:507,42,0 0/0:15,0:15:39.11:0,39,448 0/0:41,0:41:99:0,102,1201 0/1:12,8:20:99:237,0,317 0/1:5,9:14:99:266,0,134 0/1:7,4:11:99:117,0,171 1/1:0,29:29:75.24:951,75,0 1/1:0,26:26:63.20:802,63,0 0/0:18,0:18:48.14:0,48,569 0/0:18,1:19:12.56:0,13,517 0/1:15,12:27:99:284,0,467 1/1:0,10:10:30.09:376,30,0 1/1:0,32:32:75.21:946,75,0 1/1:0,17:17:45.14:574,45,0 0/1:9,6:15:99:144,0,269 1/1:0,18:18:48.15:604,48,0 0/1:7,6:13:99:181,0,180 0/1:5,10:15:99:304,0,108 1/1:0,15:15:42.13:521,42,0 0/0:29,0:30:66.21:0,66,848 0/1:8,11:19:99:338,0,181 1/1:0,17:17:45.14:565,45,0 0/1:11,9:20:99:276,0,286 0/1:9,7:16:99:216,0,227 0/1:6,3:9:88.46:88,0,155 0/0:14,0:14:39.12:0,39,477 0/1:4,8:12:76.33:236,0,76 0/1:6,8:14:99:250,0,164 0/1:15,1:16:1.50:0,4,395 1/1:0,13:13:36.11:443,36,0 12 125438516 . T C 18755.77 . AC=47;AF=0.560;AN=84;BaseQRankSum=2.660;DP=1234;Dels=0.00;FS=1.328;HRun=1;HaplotypeScore=0.9627;InbreedingCoeff=0.1787;MQ=58.07;MQ0=0;MQRankSum=2.593;QD=21.22;ReadPosRankSum=-1.486 GT:AD:DP:GQ:PL 1/1:0,18:18:54.15:641,54,0 1/1:0,20:20:54.15:644,54,0 1/1:0,14:14:42.11:480,42,0 0/1:53,36:89:99:1025,0,1577 1/1:0,53:53:99:1928,147,0 0/1:27,15:42:99:429,0,821 0/0:44,0:44:99:0,117,1494 1/1:0,34:34:96.30:1220,96,0 0/0:28,0:28:78.23:0,78,954 0/0:24,0:24:69.21:0,69,851 0/1:16,7:23:99:126,0,529 0/1:15,6:21:99:142,0,466 1/1:0,25:25:63.16:751,63,0 0/0:19,0:19:48.15:0,48,601 0/0:80,0:80:99:0,214,2679 0/1:8,4:12:97.54:98,0,243 0/1:8,13:21:99:370,0,229 0/1:9,7:16:99:182,0,287 1/1:1,21:22:32.60:706,33,0 1/1:0,42:42:99:1384,114,0 0/0:41,0:41:99:0,105,1304 0/0:31,2:33:40.44:0,40,908 0/1:32,27:60:99:839,0,951 1/1:0,21:21:63.20:817,63,0 1/1:0,33:33:96.30:1241,96,0 1/1:0,27:27:78.24:989,78,0 0/1:10,15:25:99:458,0,240 1/1:0,24:24:63.16:749,63,0 0/1:8,7:15:99:214,0,221 0/1:8,8:16:99:255,0,223 1/1:0,18:18:51.12:585,51,0 0/0:41,0:41:99:0,117,1459 0/1:22,12:34:99:310,0,634 1/1:0,13:13:39.11:467,39,0 0/1:11,7:18:99:198,0,350 0/1:16,12:28:99:322,0,461 0/1:24,13:37:99:268,0,721 0/0:30,0:30:78.25:0,78,992 0/1:16,10:26:99:234,0,502 0/1:16,5:21:99:125,0,467 0/0:10,0:10:27.09:0,27,345 1/1:0,16:16:48.13:563,48,0 12 125438523 . C T 19718.37 . AC=47;AF=0.560;AN=84;BaseQRankSum=-13.715;DP=1293;Dels=0.00;FS=5.734;HRun=1;HaplotypeScore=0.7695;InbreedingCoeff=0.1788;MQ=57.92;MQ0=0;MQRankSum=0.452;QD=21.18;ReadPosRankSum=-1.712 GT:AD:DP:GQ:PL 1/1:0,25:25:69.20:817,69,0 1/1:0,19:19:57.17:666,57,0 1/1:0,14:14:42.10:484,42,0 0/1:53,40:93:99:1098,0,1685 1/1:0,58:58:99:1973,165,0 0/1:27,20:47:99:520,0,847 0/0:45,0:45:99:0,123,1629 1/1:0,34:34:99:1202,99,0 0/0:26,0:26:69.22:0,69,872 0/0:26,0:26:72.21:0,72,872 0/1:18,8:26:99:144,0,562 0/1:13,5:18:99:102,0,427 1/1:0,24:24:66.17:768,66,0 0/0:22,0:22:51.14:0,51,622 0/0:80,0:80:99:0,211,2633 0/1:7,5:12:99:146,0,220 0/1:9,12:21:99:346,0,274 0/1:10,7:17:99:184,0,321 1/1:0,25:25:72.21:856,72,0 1/1:0,47:47:99:1448,120,0 0/0:41,0:41:99:0,108,1336 0/0:30,1:31:46:0,46,951 0/1:34,27:61:99:781,0,1097 1/1:0,25:25:72.21:855,72,0 1/1:0,38:38:99:1235,102,0 1/1:0,30:30:87.25:1028,87,0 0/1:10,16:26:99:484,0,235 1/1:0,24:24:69.21:816,69,0 0/1:8,6:14:99:171,0,220 0/1:8,11:19:99:330,0,239 1/1:0,19:19:54.10:615,54,0 0/0:45,0:45:99:0,120,1493 0/1:21,14:35:99:379,0,602 1/1:0,13:13:36.11:439,36,0 0/1:9,8:17:99:242,0,215 0/1:17,12:29:99:309,0,472 0/1:24,10:34:99:227,0,761 0/0:35,0:35:87.27:0,87,1094 0/1:15,13:28:99:299,0,474 0/1:15,8:23:99:218,0,440 0/0:11,0:11:33.10:0,33,402 1/1:0,16:16:48.11:539,48,0 12 125450307 . CTTCG C 639.41 . AC=11;AF=0.131;AN=84;BaseQRankSum=19.587;DP=1911;FS=1505.755;HRun=0;HaplotypeScore=201.4454;InbreedingCoeff=-0.1771;MQ=59.09;MQ0=0;MQRankSum=2.985;QD=1.45;ReadPosRankSum=-20.281 GT:AD:DP:GQ:PL 0/1:43,0:43:31.18:31,0,3119 0/0:27,0:27:47.57:0,48,2045 0/1:45,0:45:99:102,0,3016 0/0:66,0:66:64.25:0,64,4865 0/0:53,0:53:35.49:0,35,3880 0/0:37,0:37:37.35:0,37,2935 0/0:27,0:27:35.01:0,35,1936 0/0:37,0:37:50.51:0,51,2866 0/1:36,0:36:51.47:51,0,2529 0/1:34,0:34:13.52:14,0,2337 0/0:42,0:42:41.12:0,41,3164 0/1:48,0:48:20.21:20,0,3198 0/1:34,0:34:18.31:18,0,2482 0/0:49,0:49:41.13:0,41,3822 0/0:139,0:139:99:0,126,10454 0/0:32,0:32:48.23:0,48,2507 0/0:44,0:44:31.09:0,31,3109 0/0:35,0:35:11.19:0,11,2536 0/0:52,0:52:18.52:0,19,3960 0/0:58,0:58:99:0,111,4270 0/0:67,0:67:1.05:6,0,4939 0/0:43,0:43:7.87:0,8,2983 0/0:71,0:71:99:0,134,5592 0/0:29,0:29:63.76:0,64,2163 0/0:37,0:36:42.84:0,43,2830 0/0:32,0:31:40.04:0,40,2368 0/1:34,0:33:8.60:9,0,2351 0/1:27,13:40:99:262,0,2149 0/0:30,0:30:90.31:0,90,2538 0/1:26,15:41:99:204,0,2137 0/1:43,0:43:24.03:24,0,3067 0/0:59,0:59:99:0,146,4924 0/0:53,0:53:99:0,126,4381 0/0:42,0:42:45.67:0,46,3008 0/0:37,0:37:1.94:2,0,2662 0/0:44,0:44:66.03:0,66,3449 0/0:73,0:73:99:0,117,5382 0/0:43,0:43:7.43:0,7,3104 0/0:30,0:30:55.59:0,56,2272 0/1:42,0:42:44.10:44,0,2809 0/0:33,0:33:15.68:0,16,2409 0/0:50,0:50:53.15:0,53,3616 12 125450309 . T C 20.12 . AC=3;AF=0.036;AN=84;BaseQRankSum=-8.663;DP=2071;Dels=0.01;FS=1385.157;HRun=1;HaplotypeScore=3.5863;InbreedingCoeff=-0.0643;MQ=59.14;MQ0=0;MQRankSum=1.694;QD=0.16;ReadPosRankSum=-17.775 GT:AD:DP:GQ:PL 0/0:38,9:47:71.24:0,71,1187 0/0:24,8:32:6.78:0,7,761 0/1:37,9:46:25.46:25,0,1081 0/0:60,12:72:75.47:0,75,1950 0/0:48,11:60:18.10:0,18,1568 0/0:35,3:38:39.20:0,39,1239 0/0:24,9:33:7.82:0,8,813 0/0:35,6:41:70.76:0,71,1185 0/0:34,8:42:36.88:0,37,1003 0/1:30,6:36:24.28:24,0,932 0/0:39,6:45:52.93:0,53,1249 0/0:40,10:50:0.56:0,1,1196 0/0:31,5:36:2.56:1,0,976 0/0:46,8:54:99:0,106,1591 0/0:126,20:146:99:0,204,4014 0/0:30,5:35:36.06:0,36,1007 0/0:40,7:47:18.16:0,18,1253 0/0:31,6:37:26.32:0,26,1011 0/0:50,6:56:69.20:0,69,1608 0/0:53,11:64:99:0,154,1806 0/0:60,11:71:99:0,138,1944 0/0:39,8:47:67.61:0,68,1148 0/0:67,9:76:99:0,137,2290 0/0:27,6:33:74.59:0,75,931 0/0:35,7:42:65.02:0,65,1098 0/0:28,6:34:77.71:0,78,950 0/0:29,5:34:26.22:0,26,934 0/0:26,0:26:78.23:0,78,920 0/0:30,3:33:87.25:0,87,1021 0/0:26,0:26:78.23:0,78,928 0/0:39,8:47:46.57:0,47,1212 0/0:60,12:72:99:0,178,2125 0/0:52,6:58:99:0,127,1813 0/0:38,12:50:23.74:0,24,1206 0/0:34,8:42:39.96:0,40,1083 0/0:42,4:46:68.36:0,68,1437 0/0:65,10:75:99:0,154,2133 0/0:38,9:47:21.70:0,22,1187 0/0:26,5:31:76.11:0,76,898 0/1:35,11:46:43.76:44,0,1078 0/0:30,3:33:1.56:4,0,953 0/0:46,11:57:99:0,100,1546 12 125450311 . G C 2404.41 . AC=31;AF=0.369;AN=84;BaseQRankSum=3.995;DP=2218;Dels=0.01;FS=3064.407;HRun=2;HaplotypeScore=3.8556;InbreedingCoeff=-0.5908;MQ=59.18;MQ0=0;MQRankSum=-0.183;QD=1.42;ReadPosRankSum=-24.938 GT:AD:DP:GQ:PL 0/1:38,11:49:31.13:31,0,942 0/1:27,9:36:39.85:40,0,657 0/1:37,12:49:99:135,0,929 0/1:57,15:72:99:163,0,1571 0/1:46,16:62:99:201,0,1355 0/0:36,5:41:11.31:0,11,1180 0/1:22,12:34:72.23:72,0,639 0/1:34,9:43:53.14:53,0,986 0/1:34,10:45:17.79:18,0,834 0/1:29,8:37:72.02:72,0,747 0/1:42,9:51:74.09:74,0,1191 0/1:36,15:51:99:165,0,789 0/1:31,9:40:72.07:72,0,820 0/0:47,8:55:67.28:0,67,1330 0/1:125,41:166:93.49:93,0,3076 0/1:30,7:37:18.12:18,0,809 0/1:34,12:46:62.22:62,0,865 0/1:30,10:40:99:129,0,790 0/0:51,11:62:33.82:0,34,1379 0/1:53,17:71:99:117,0,1334 0/0:60,15:75:2.98:0,3,1597 0/1:38,12:50:75.55:76,0,923 0/1:64,13:78:39.64:40,0,1906 0/0:28,9:38:15.03:0,15,725 0/1:34,11:45:9.21:9,0,923 0/0:27,9:36:36.74:0,37,719 0/1:29,6:35:17.85:18,0,736 0/0:26,0:26:75.18:0,75,796 0/0:33,6:39:20.62:0,21,844 0/0:26,0:26:72.17:0,72,770 0/1:38,12:50:86.56:87,0,893 0/1:64,20:84:99:118,0,1646 0/0:55,8:63:12.21:0,12,1528 0/1:36,18:54:99:244,0,812 0/1:34,12:46:38.67:39,0,879 0/1:42,10:52:69.59:70,0,1113 0/1:64,14:79:2.83:0,0,1650 0/1:38,12:50:99:163,0,921 0/1:28,7:35:23.21:23,0,757 0/1:37,12:49:86.91:87,0,994 0/0:30,5:35:2.17:0,2,846 0/1:46,12:58:88.44:88,0,1077 12 125451677 . C T 826.61 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.064;DP=992;Dels=0.00;FS=8.307;HRun=0;HaplotypeScore=0.9366;InbreedingCoeff=-0.0245;MQ=58.61;MQ0=0;MQRankSum=0.413;QD=10.74;ReadPosRankSum=-3.264 GT:AD:DP:GQ:PL 0/0:17,0:18:51.15:0,51,603 0/0:17,0:17:45.13:0,45,539 0/0:9,0:9:21.04:0,21,235 0/0:65,0:65:99:0,153,2028 0/0:62,0:62:99:0,163,2131 0/0:30,0:30:78.25:0,78,1008 0/0:29,0:29:81.24:0,81,1012 0/0:28,0:28:75.23:0,75,977 0/0:12,0:12:33.10:0,33,396 0/0:23,0:23:60.18:0,60,736 0/0:16,0:16:42.12:0,42,507 0/0:12,0:12:33.10:0,33,405 0/0:9,0:9:27.07:0,27,297 0/0:14,0:14:39.11:0,39,467 0/1:31,26:57:99:691,0,790 0/0:22,0:22:60.18:0,60,728 0/1:13,7:20:99:198,0,330 0/0:12,0:12:33.09:0,33,385 0/0:26,0:26:66.17:0,66,771 0/0:32,0:32:81.23:0,81,959 0/0:28,0:28:78.23:0,78,925 0/0:23,0:23:60.16:0,60,717 0/0:48,0:48:99:0,126,1601 0/0:20,0:20:54.16:0,54,681 0/0:34,0:34:81.26:0,81,1082 0/0:32,0:32:84.26:0,84,1093 0/0:14,0:14:42.12:0,42,509 0/0:22,0:22:63.17:0,63,724 0/0:17,0:17:51.14:0,51,581 0/0:16,0:16:45.13:0,45,532 0/0:18,0:18:54.15:0,54,619 0/0:23,0:23:63.19:0,63,757 0/0:22,0:22:63.18:0,63,750 0/0:13,0:13:39.10:0,39,441 0/0:17,0:17:42.12:0,42,494 0/0:19,0:19:51.13:0,51,590 0/0:28,0:28:69.21:0,69,862 0/0:20,0:20:54.15:0,54,639 0/0:12,0:12:36.08:0,36,426 0/0:19,0:19:51.15:0,51,624 0/0:17,0:17:48.11:0,48,551 0/0:17,0:17:45.11:0,45,516 12 125626749 . G A 1724.97 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.784;DP=2890;Dels=0.00;FS=1.748;HRun=1;HaplotypeScore=1.5329;InbreedingCoeff=-0.0244;MQ=59.25;MQ0=0;MQRankSum=0.556;QD=17.08;ReadPosRankSum=-2.092 GT:AD:DP:GQ:PL 0/0:53,0:54:99:0,144,1833 0/1:24,37:61:99:1095,0,646 0/1:16,24:40:99:692,0,444 0/0:120,0:120:99:0,310,4162 0/0:89,0:89:99:0,241,3200 0/0:77,0:77:99:0,199,2607 0/0:55,0:55:99:0,144,1951 0/0:72,0:72:99:0,187,2454 0/0:49,0:49:99:0,138,1737 0/0:36,0:36:99:0,102,1271 0/0:50,0:50:99:0,135,1698 0/0:48,0:48:99:0,126,1596 0/0:47,0:47:99:0,132,1657 0/0:42,0:43:99:0,123,1527 0/0:158,0:158:99:0,424,5233 0/0:53,0:53:99:0,153,1875 0/0:65,0:65:99:0,174,2174 0/0:53,0:54:99:0,150,1895 0/0:124,0:125:99:0,334,4178 0/0:146,0:146:99:0,394,4947 0/0:119,0:119:99:0,322,4030 0/0:72,0:73:99:0,208,2601 0/0:139,0:139:99:0,364,4878 0/0:53,0:53:99:0,147,1939 0/0:63,0:64:99:0,172,2204 0/0:80,0:81:99:0,208,2730 0/0:33,0:33:90.28:0,90,1142 0/0:50,0:50:99:0,126,1581 0/0:53,0:53:99:0,150,1858 0/0:54,0:54:99:0,153,1902 0/0:50,0:50:99:0,150,1883 0/0:126,0:128:99:0,328,4211 0/0:68,0:68:99:0,181,2265 0/0:38,0:38:99:0,111,1388 0/0:50,0:50:99:0,150,1899 0/0:48,0:48:99:0,141,1730 0/0:91,0:92:99:0,250,3024 0/0:42,0:42:99:0,117,1486 0/0:55,0:55:99:0,156,1970 0/0:47,0:47:99:0,129,1629 0/0:53,0:55:99:0,156,1924 0/0:56,0:56:99:0,156,1973 12 129293346 . C T 23601.12 . 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T G 1459.39 . AC=18;AF=0.214;AN=84;BaseQRankSum=-52.537;DP=7515;DS;Dels=0.00;FS=3200.000;HRun=2;HaplotypeScore=5.5303;InbreedingCoeff=-0.2744;MQ=59.36;MQ0=0;MQRankSum=-0.975;QD=0.43;ReadPosRankSum=-31.983 GT:AD:DP:GQ:PL 0/0:108,55:164:18.25:0,18,3319 0/0:123,60:183:25.74:0,26,3656 0/0:111,58:171:93.28:0,93,3458 0/1:134,102:236:99:172,0,3989 0/1:129,112:243:69.86:70,0,3879 0/0:147,85:233:99:0,161,4948 0/1:104,65:169:67.85:68,0,3424 0/0:118,68:186:79.35:0,79,3632 0/0:115,55:171:85.36:0,85,3507 0/1:89,56:145:42.24:42,0,2566 0/0:114,44:158:99:0,142,3558 0/0:114,50:165:24.07:0,24,3350 0/0:90,40:130:12.35:0,12,2671 0/0:109,50:159:75.02:0,75,3315 0/1:156,87:243:99:328,0,4380 0/0:93,45:138:86.10:0,86,2836 0/1:106,52:158:51.04:51,0,3351 0/0:99,44:143:32.66:0,33,3095 0/1:156,76:232:99:183,0,4667 0/1:158,82:241:30.84:31,0,4650 0/1:153,89:242:99:196,0,4384 0/0:111,65:177:50.36:0,50,3400 0/0:144,79:223:99:0,172,4515 0/0:102,60:163:59.41:0,59,3276 0/0:149,74:224:99:0,207,4897 0/0:108,86:194:85.40:0,85,3282 0/0:87,43:130:83.50:0,83,2717 0/1:103,59:162:21.63:22,0,3223 0/1:87,55:142:18.72:19,0,2550 0/0:116,55:171:70.60:0,71,3413 0/0:86,42:128:99:0,167,2865 0/0:139,83:223:65.68:0,66,4065 0/0:118,66:184:99:0,190,3672 0/1:101,56:158:73.25:73,0,3098 0/0:98,63:161:14.56:0,15,3109 0/1:106,60:167:77.28:77,0,3238 0/1:146,69:215:43.89:44,0,4380 0/0:116,54:170:99:0,183,3704 0/1:112,60:173:51.70:52,0,3383 0/1:90,46:137:81.32:81,0,2734 0/1:99,55:154:25.71:26,0,2924 0/1:88,61:149:92.41:92,0,2767 12 129566340 . G A 423.12 . 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C T 2046.88 . AC=5;AF=0.060;AN=84;BaseQRankSum=2.085;DP=2333;Dels=0.00;FS=5.349;HRun=0;HaplotypeScore=1.1262;InbreedingCoeff=-0.0633;MQ=58.67;MQ0=0;MQRankSum=-1.333;QD=11.83;ReadPosRankSum=-1.610 GT:AD:DP:GQ:PL 0/0:31,0:32:90.25:0,90,1041 0/1:23,22:45:99:542,0,616 0/1:17,18:35:99:522,0,437 0/0:118,0:118:99:0,319,4056 0/0:106,0:106:99:0,295,3659 0/0:78,0:79:99:0,208,2646 0/0:82,0:82:99:0,226,2851 0/0:92,0:92:99:0,247,3089 0/0:42,0:42:99:0,117,1351 0/0:29,0:29:78.21:0,78,903 0/0:33,0:33:90.22:0,90,1020 0/0:26,0:26:78.20:0,78,852 0/0:40,0:40:99:0,114,1330 0/0:27,0:27:81.22:0,81,913 0/0:147,0:147:99:0,379,4354 0/0:36,0:36:99:0,105,1246 0/0:44,0:44:99:0,117,1346 0/0:31,0:31:93.26:0,93,1062 0/0:85,0:85:99:0,220,2565 0/0:76,0:77:99:0,208,2468 0/0:75,0:75:99:0,208,2390 0/0:51,0:51:99:0,126,1446 0/0:141,0:142:99:0,394,5000 0/0:77,0:77:99:0,205,2576 0/0:72,0:72:99:0,196,2434 0/0:54,0:54:99:0,153,1865 0/0:32,0:32:87.24:0,87,1029 0/0:34,0:34:93.22:0,93,1036 0/0:26,0:26:72.19:0,72,830 0/0:33,0:33:93.25:0,93,1071 0/0:44,0:44:99:0,129,1460 0/0:87,1:88:99:0,209,2718 0/0:42,0:42:99:0,114,1336 0/1:21,14:35:99:389,0,565 0/1:15,10:25:99:289,0,373 0/1:19,14:33:99:402,0,514 0/0:72,0:72:99:0,199,2292 0/0:43,0:43:99:0,120,1400 0/0:40,0:40:99:0,108,1231 0/0:37,0:37:99:0,105,1187 0/0:36,0:36:96.27:0,96,1113 0/0:36,0:36:99:0,102,1208 12 129566469 . C T 325.59 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.100;DP=1486;Dels=0.00;FS=5.172;HRun=1;HaplotypeScore=2.7784;InbreedingCoeff=-0.0121;MQ=58.56;MQ0=0;MQRankSum=-1.261;QD=12.06;ReadPosRankSum=-2.073 GT:AD:DP:GQ:PL 0/0:24,0:24:66.17:0,66,779 0/0:22,0:22:57.16:0,57,693 0/0:14,0:14:42.12:0,42,508 0/0:101,0:101:99:0,280,3563 0/0:84,0:84:99:0,235,3050 0/0:66,1:67:99:0,145,2210 0/0:62,0:62:99:0,165,2075 0/0:52,0:52:99:0,150,1933 0/0:23,0:23:57.17:0,57,697 0/0:24,0:24:66.18:0,66,805 0/0:24,0:24:72.21:0,72,869 0/0:17,0:17:48.15:0,48,590 0/0:19,0:20:48.15:0,48,613 0/0:21,0:21:60.18:0,60,727 0/0:60,0:60:99:0,156,1872 0/0:21,0:21:60.16:0,60,742 0/0:31,0:31:93.29:0,93,1151 0/0:24,0:24:63.19:0,63,766 0/0:37,0:37:96.28:0,96,1164 0/0:61,0:61:99:0,169,2058 0/0:22,0:22:63.19:0,63,766 0/0:39,0:40:99:0,102,1262 0/0:92,0:92:99:0,250,3237 0/0:50,0:50:99:0,132,1677 0/0:47,0:48:99:0,132,1707 0/0:36,0:36:93.30:0,93,1211 0/0:21,0:21:60.19:0,60,741 0/1:11,16:27:99:372,0,295 0/0:15,0:15:39.11:0,39,471 0/0:16,0:16:45.14:0,45,564 0/0:28,0:28:81.22:0,81,975 0/0:41,0:41:99:0,120,1474 0/0:34,0:34:96.28:0,96,1170 0/0:25,0:25:69.22:0,69,856 0/0:20,0:20:60.16:0,60,708 0/0:13,0:13:36.08:0,36,415 0/0:35,0:35:93.25:0,93,1118 0/0:35,0:35:99:0,99,1215 0/0:21,0:21:57.13:0,57,680 0/0:27,0:27:75.21:0,75,896 0/0:20,0:20:60.14:0,60,695 0/0:31,0:31:90.27:0,90,1097 12 130845850 . C G 1989.07 . AC=2;AF=0.024;AN=84;BaseQRankSum=6.132;DP=2854;Dels=0.00;FS=0.448;HRun=0;HaplotypeScore=1.4235;InbreedingCoeff=-0.0244;MQ=59.40;MQ0=0;MQRankSum=1.355;QD=14.01;ReadPosRankSum=-0.276 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,132,1667 0/0:69,0:69:99:0,169,2190 0/0:59,0:59:99:0,163,2071 0/0:110,0:110:99:0,304,4062 0/0:92,0:92:99:0,247,3372 0/1:35,38:73:99:1095,0,1139 0/1:39,30:69:99:957,0,1243 0/0:76,0:77:99:0,205,2768 0/0:68,0:68:99:0,181,2332 0/0:39,0:39:99:0,111,1391 0/0:49,0:49:99:0,138,1767 0/0:71,0:71:99:0,205,2560 0/0:54,0:54:99:0,144,1853 0/0:64,0:64:99:0,175,2227 0/0:179,0:179:99:0,451,5787 0/0:59,0:59:99:0,166,2084 0/0:55,0:55:99:0,163,2061 0/0:48,0:48:99:0,129,1688 0/0:88,0:88:99:0,220,2824 0/0:85,0:85:99:0,238,3002 0/0:79,0:79:99:0,208,2667 0/0:43,0:43:99:0,120,1518 0/0:112,0:112:99:0,298,4054 0/0:54,0:54:99:0,153,2073 0/0:77,0:77:99:0,217,2957 0/0:58,0:58:99:0,153,2087 0/0:43,0:43:99:0,117,1498 0/0:51,0:51:99:0,135,1732 0/0:51,0:51:99:0,147,1868 0/0:69,0:69:99:0,181,2331 0/0:58,0:58:99:0,157,2041 0/0:84,0:84:99:0,223,2901 0/0:60,0:60:99:0,159,2033 0/0:53,0:53:99:0,153,1927 0/0:70,0:70:99:0,202,2570 0/0:64,0:64:99:0,184,2372 0/0:68,0:68:99:0,187,2377 0/0:64,0:64:99:0,184,2335 0/0:63,0:63:99:0,175,2219 0/0:57,0:57:99:0,163,2043 0/0:62,0:62:99:0,156,1997 0/0:60,1:61:99:0,163,2094 12 130912757 . C T 8181.75 . AC=12;AF=0.143;AN=84;BaseQRankSum=-16.466;DP=1829;Dels=0.00;FS=11.522;HRun=0;HaplotypeScore=1.3800;InbreedingCoeff=0.2222;MQ=59.23;MQ0=0;MQRankSum=0.709;QD=17.30;ReadPosRankSum=-0.212 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,99,1232 0/0:36,1:37:84.60:0,85,1278 0/0:28,0:28:75.23:0,75,958 0/0:98,0:99:99:0,253,3366 0/0:76,0:76:99:0,202,2672 0/0:71,0:71:99:0,199,2592 0/0:43,1:44:92.79:0,93,1539 0/0:54,0:54:99:0,156,2032 0/0:25,0:26:66.21:0,66,855 0/0:22,0:22:57.15:0,57,691 0/1:12,17:29:99:502,0,328 0/0:27,0:27:78.25:0,78,976 0/0:23,0:23:60.19:0,60,764 0/0:31,0:31:93.29:0,93,1155 0/1:54,64:119:99:1632,0,1303 1/1:0,32:32:93.28:1100,93,0 0/0:27,0:27:78.24:0,78,974 0/0:33,0:33:93.29:0,93,1179 0/0:69,0:69:99:0,181,2221 0/0:62,0:62:99:0,162,1994 0/0:48,0:48:99:0,126,1515 0/0:38,0:38:99:0,105,1291 0/1:39,38:77:99:972,0,1243 0/0:54,0:54:99:0,160,2124 0/0:59,0:59:99:0,166,2181 0/0:37,0:37:99:0,105,1401 0/0:29,0:29:78.23:0,78,956 0/0:26,0:26:75.22:0,75,910 0/0:24,0:24:69.21:0,69,857 0/1:13,27:40:99:779,0,336 0/1:15,12:27:99:340,0,399 0/0:62,0:62:99:0,165,2045 0/1:23,28:51:99:790,0,612 0/1:15,13:30:99:377,0,433 1/1:3,41:44:72.60:1311,73,0 0/0:40,0:40:99:0,105,1298 0/0:47,0:49:99:0,120,1510 0/1:10,13:24:99:378,0,296 0/0:26,0:26:78.25:0,78,983 0/0:31,0:31:84.22:0,84,1016 0/0:26,0:26:72.19:0,72,884 0/0:41,0:41:99:0,123,1505 12 131306314 . C G 49247.98 . 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A C 324.03 . 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G A 2881.66 . AC=2;AF=0.024;AN=84;BaseQRankSum=7.544;DP=3102;Dels=0.00;FS=8.867;HRun=0;HaplotypeScore=2.5319;InbreedingCoeff=-0.0244;MQ=59.11;MQ0=0;MQRankSum=1.209;QD=13.47;ReadPosRankSum=-0.823 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,141,1581 0/0:57,0:57:99:0,153,1736 0/0:39,0:39:99:0,105,1238 0/0:210,0:211:99:0,539,6673 0/0:172,0:172:99:0,478,5867 0/1:50,59:109:99:1578,0,1488 0/1:57,48:105:99:1367,0,1623 0/0:111,0:111:99:0,301,3730 0/0:57,0:57:99:0,150,1729 0/0:35,0:35:96.26:0,96,1095 0/0:41,0:42:99:0,114,1288 0/0:53,0:55:99:0,153,1738 0/0:31,0:31:84.20:0,84,961 0/0:52,0:52:99:0,138,1606 0/0:168,0:168:99:0,415,4832 0/0:58,0:58:99:0,171,1965 0/0:44,0:44:99:0,129,1453 0/0:49,0:49:99:0,138,1575 0/0:76,0:76:99:0,208,2358 0/0:110,0:110:99:0,301,3529 0/0:95,0:97:99:0,250,2850 0/0:51,0:51:99:0,141,1594 0/0:166,0:166:99:0,433,5450 0/0:75,0:76:99:0,211,2573 0/0:111,0:111:99:0,295,3710 0/0:81,1:82:99:0,195,2599 0/0:44,0:44:99:0,120,1391 0/0:62,0:62:99:0,162,1890 0/0:42,0:42:99:0,111,1270 0/0:50,1:51:99:0,108,1459 0/0:55,0:55:99:0,156,1769 0/0:82,0:82:99:0,214,2501 0/0:64,0:65:99:0,177,2043 0/0:41,0:41:99:0,114,1315 0/0:42,0:42:99:0,111,1267 0/0:62,1:63:99:0,140,1834 0/0:101,0:101:99:0,253,2910 0/0:46,0:47:99:0,120,1358 0/0:46,0:46:99:0,132,1517 0/0:41,0:41:99:0,105,1213 0/0:49,0:49:99:0,132,1546 0/0:57,0:57:99:0,156,1734 12 132325239 . G A 20914.81 . AC=37;AF=0.440;AN=84;BaseQRankSum=2.422;DP=2572;Dels=0.00;FS=35.302;HRun=0;HaplotypeScore=2.3994;InbreedingCoeff=-0.0144;MQ=58.96;MQ0=0;MQRankSum=-0.005;QD=13.60;ReadPosRankSum=0.884 GT:AD:DP:GQ:PL 0/1:11,21:38:99:468,0,305 0/1:21,19:40:99:505,0,385 0/1:14,10:28:99:191,0,236 0/0:162,0:173:99:0,379,4543 0/0:122,0:129:99:0,277,3362 0/0:103,0:106:99:0,223,2666 0/0:105,1:106:99:0,250,2958 0/1:33,40:81:99:936,0,851 0/1:15,12:29:99:333,0,267 0/1:16,15:33:99:251,0,341 0/0:35,0:38:90.21:0,90,987 0/1:31,22:56:99:541,0,608 0/0:24,1:25:57.17:0,57,684 1/1:2,33:41:51.69:907,52,0 0/1:59,54:126:99:1351,0,1145 0/1:20,14:38:99:283,0,483 1/1:0,25:34:63.16:730,63,0 0/1:22,14:37:99:348,0,598 0/1:23,20:52:99:520,0,450 0/0:79,0:81:99:0,213,2355 0/1:36,43:91:99:1154,0,715 1/1:1,51:59:99:1472,132,0 0/1:72,55:144:99:1419,0,1715 0/1:43,28:79:99:605,0,982 0/0:96,0:101:99:0,223,2660 0/1:44,34:84:99:803,0,1136 1/1:0,26:34:75.19:845,75,0 1/1:0,36:43:90.21:1022,90,0 0/1:7,19:30:99:529,0,158 1/1:0,42:49:99:1215,105,0 1/1:0,36:41:99:1162,102,0 0/0:81,0:82:99:0,189,2179 0/1:26,25:56:99:591,0,617 0/1:17,14:32:99:403,0,288 0/0:43,0:47:99:0,105,1153 1/1:0,33:39:87.19:980,87,0 0/0:70,0:73:99:0,156,1747 0/1:21,16:39:99:398,0,511 0/1:17,15:32:99:366,0,334 0/0:42,0:44:96.23:0,96,1064 0/0:28,0:29:66.19:0,66,769 0/1:23,23:52:99:588,0,502 12 132325376 . C T 1823.21 . AC=7;AF=0.083;AN=84;BaseQRankSum=4.641;DP=753;Dels=0.00;FS=2.387;HRun=0;HaplotypeScore=1.2151;InbreedingCoeff=-0.0919;MQ=58.85;MQ0=0;MQRankSum=0.394;QD=10.85;ReadPosRankSum=-0.113 GT:AD:DP:GQ:PL 0/0:10,0:10:27.07:0,27,300 0/0:18,0:18:51.12:0,51,563 0/0:14,0:14:36.10:0,36,411 0/1:19,19:38:99:485,0,529 0/1:27,23:50:99:610,0,693 0/0:23,0:23:57.14:0,57,663 0/0:19,0:19:54.14:0,54,628 0/0:22,0:22:57.15:0,57,693 0/0:13,0:13:36.09:0,36,393 0/0:7,0:7:15:0,15,139 0/0:16,0:16:42.11:0,42,479 0/0:14,0:14:36.09:0,36,401 0/0:7,0:7:21.02:0,21,208 0/0:17,0:17:42.11:0,42,472 0/0:29,0:31:75.17:0,75,831 0/0:23,0:23:66.10:0,66,706 0/0:14,0:14:33.09:0,33,380 0/0:13,0:13:30.06:0,30,309 0/0:20,0:21:57.12:0,57,611 0/0:32,0:32:78.20:0,78,870 0/1:9,8:17:99:206,0,249 0/0:6,0:6:18.03:0,18,186 0/0:35,0:35:90.26:0,90,1084 0/0:13,0:13:33.09:0,33,392 0/0:25,0:25:69.20:0,69,825 0/0:13,0:13:30.09:0,30,379 0/0:12,0:12:27.02:0,27,285 0/0:19,0:19:48.12:0,48,523 0/1:8,4:13:99:109,0,217 0/0:19,0:19:48.11:0,48,521 0/0:19,0:19:54.14:0,54,606 0/1:16,3:19:50.82:51,0,433 0/0:23,0:23:57.12:0,57,616 0/1:5,6:11:99:145,0,138 0/1:8,12:20:99:331,0,156 0/0:11,0:11:33.08:0,33,352 0/0:17,0:17:48.12:0,48,539 0/0:16,0:16:42.11:0,42,468 0/0:11,0:11:30.04:0,30,308 0/0:12,0:12:36.09:0,36,386 0/0:8,0:8:24.06:0,24,268 0/0:12,0:12:33.07:0,33,348 12 132380353 . C T 1058.16 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.031;DP=2215;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.5796;InbreedingCoeff=-0.0244;MQ=59.07;MQ0=0;MQRankSum=0.185;QD=13.74;ReadPosRankSum=1.785 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,132,1687 0/0:37,0:37:99:0,105,1292 0/0:47,0:47:99:0,114,1475 0/0:87,0:87:99:0,208,2780 0/0:83,0:83:99:0,199,2622 0/0:64,0:64:99:0,147,1938 0/0:53,0:53:99:0,132,1727 0/0:79,0:79:99:0,184,2488 0/0:52,0:52:99:0,138,1757 0/0:41,0:41:99:0,105,1343 0/0:38,0:38:99:0,108,1342 0/0:47,0:47:99:0,126,1578 0/0:34,0:34:81.26:0,81,1059 0/0:61,0:61:99:0,159,1955 0/0:137,0:137:99:0,328,4144 0/0:54,0:54:99:0,150,1882 0/0:38,0:38:99:0,111,1397 0/0:32,0:32:87.25:0,87,1081 0/0:51,0:51:99:0,141,1716 0/0:62,0:63:99:0,153,1938 0/0:65,0:66:99:0,147,1855 0/0:39,0:39:93.29:0,93,1202 0/0:103,0:103:99:0,253,3409 0/0:40,0:40:96.30:0,96,1262 0/0:66,0:66:99:0,163,2197 0/0:51,0:51:99:0,117,1596 0/0:36,0:36:90.29:0,90,1178 0/0:41,0:41:99:0,102,1256 0/0:36,0:36:87.26:0,87,1101 0/0:40,0:40:99:0,111,1409 0/0:44,0:44:99:0,117,1497 0/0:58,0:59:99:0,135,1776 0/0:51,0:51:99:0,129,1642 0/0:46,0:46:99:0,123,1524 0/0:41,0:41:99:0,114,1423 0/0:45,0:45:99:0,108,1402 0/1:19,24:43:99:600,0,466 0/0:46,0:46:99:0,108,1373 0/1:15,19:34:99:521,0,399 0/0:40,0:40:99:0,108,1346 0/0:45,0:45:99:0,111,1437 0/0:53,0:53:99:0,135,1744 12 132396603 . C T 21688.65 . AC=66;AF=0.786;AN=84;BaseQRankSum=11.391;DP=883;Dels=0.00;FS=2.508;HRun=0;HaplotypeScore=0.4128;InbreedingCoeff=0.0090;MQ=58.87;MQ0=0;MQRankSum=2.889;QD=26.42;ReadPosRankSum=-0.466 GT:AD:DP:GQ:PL 1/1:0,7:7:21.06:247,21,0 1/1:0,9:9:24.07:287,24,0 0/1:11,8:19:99:228,0,311 1/1:0,32:32:87.27:1080,87,0 1/1:0,31:31:87.26:1067,87,0 0/1:14,12:26:99:313,0,408 0/1:13,12:25:99:379,0,347 0/1:14,9:23:99:225,0,448 1/1:0,19:19:54.16:649,54,0 1/1:1,17:18:18.66:553,19,0 0/1:7,5:12:99:150,0,187 0/1:13,7:20:99:211,0,289 0/1:11,5:16:99:102,0,316 1/1:0,14:14:42.13:513,42,0 1/1:0,52:52:99:1705,144,0 0/1:9,10:19:99:299,0,225 1/1:0,16:16:48.15:580,48,0 0/1:7,11:18:99:298,0,176 0/0:33,0:33:90.22:0,90,973 0/1:20,10:30:99:247,0,533 1/1:0,44:44:99:1507,123,0 1/1:0,17:17:45.13:539,45,0 1/1:0,47:47:99:1605,132,0 1/1:0,16:16:39.12:482,39,0 1/1:0,22:22:63.19:774,63,0 1/1:0,15:15:39.12:497,39,0 0/1:6,5:11:99:143,0,159 0/1:6,9:15:99:226,0,126 1/1:0,8:8:21.06:257,21,0 1/1:0,13:13:39.10:452,39,0 1/1:0,18:18:54.16:649,54,0 1/1:0,15:15:39.11:476,39,0 1/1:0,24:24:63.19:772,63,0 1/1:0,16:16:45.11:529,45,0 1/1:0,11:11:30.09:375,30,0 1/1:0,16:16:48.14:580,48,0 1/1:0,29:29:75.22:890,75,0 1/1:0,12:12:30.09:365,30,0 1/1:0,22:22:63.19:769,63,0 0/0:29,0:29:84.22:0,84,925 0/1:9,15:24:99:438,0,231 0/1:12,8:20:99:231,0,313 12 132399004 . C G 1357.01 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.655;DP=1361;Dels=0.00;FS=2.073;HRun=0;HaplotypeScore=0.7520;InbreedingCoeff=-0.0244;MQ=59.12;MQ0=0;MQRankSum=-0.534;QD=14.14;ReadPosRankSum=-2.312 GT:AD:DP:GQ:PL 0/0:25,0:25:66.19:0,66,811 0/0:22,0:22:54.16:0,54,670 0/0:15,0:15:42.12:0,42,505 0/0:67,0:67:99:0,175,2290 0/0:48,0:48:99:0,138,1833 0/0:34,0:34:99:0,99,1309 0/0:41,0:41:99:0,108,1414 0/0:34,0:34:99:0,99,1238 0/0:21,0:21:63.18:0,63,768 0/0:25,0:25:72.21:0,72,867 0/0:27,0:27:75.24:0,75,946 0/0:19,0:19:57.17:0,57,708 0/0:18,0:18:54.17:0,54,676 0/0:23,0:23:66.19:0,66,791 0/0:84,0:84:99:0,217,2672 0/0:29,0:29:78.25:0,78,974 0/0:27,0:27:75.23:0,75,946 0/0:23,0:23:66.21:0,66,835 0/0:53,0:54:99:0,150,1816 0/1:24,24:48:99:691,0,587 0/0:50,0:50:99:0,120,1466 0/0:31,0:31:84.26:0,84,1067 0/0:73,0:73:99:0,199,2579 0/0:36,0:36:99:0,105,1423 0/0:41,0:41:99:0,108,1450 0/0:25,0:25:72.23:0,72,951 0/0:21,0:21:57.18:0,57,709 0/0:21,0:21:60.19:0,60,759 0/0:19,0:19:54.13:0,54,639 0/0:22,0:24:60.19:0,60,770 0/0:18,0:18:51.15:0,51,631 0/1:23,25:48:99:728,0,569 0/0:40,0:40:99:0,99,1224 0/0:20,0:20:60.17:0,60,719 0/0:17,0:17:48.15:0,48,597 0/0:25,0:25:66.19:0,66,820 0/0:41,0:41:99:0,102,1252 0/0:22,0:22:63.19:0,63,784 0/0:27,0:27:81.25:0,81,1017 0/0:32,0:33:90.27:0,90,1123 0/0:17,0:17:51.15:0,51,618 0/0:27,0:27:78.24:0,78,996 12 132505698 . A C 49.10 . AC=3;AF=0.036;AN=84;BaseQRankSum=-16.210;DP=1284;Dels=0.00;FS=56.279;HRun=1;HaplotypeScore=0.7527;InbreedingCoeff=-0.0631;MQ=57.98;MQ0=0;MQRankSum=1.125;QD=0.33;ReadPosRankSum=-6.236 GT:AD:DP:GQ:PL 0/0:15,9:24:45.11:0,45,495 0/0:16,5:21:39.07:0,39,412 0/1:11,8:19:34.59:35,0,278 0/0:59,38:97:82.71:0,83,1290 0/0:42,32:74:78.04:0,78,883 0/1:32,22:54:40.75:41,0,673 0/0:32,25:57:66.09:0,66,691 0/0:29,16:46:38.29:0,38,612 0/0:11,5:16:30.07:0,30,332 0/0:12,8:20:30.05:0,30,310 0/0:15,4:19:30.05:0,30,319 0/0:16,3:20:33.07:0,33,369 0/0:13,5:18:27.05:0,27,297 0/0:15,7:22:0.49:0,0,343 0/0:29,18:47:14.07:0,14,717 0/0:13,10:24:11.98:0,12,323 0/0:24,7:31:66.19:0,66,763 0/0:15,9:24:12.49:0,12,405 0/0:22,8:30:47.61:0,48,515 0/0:33,10:43:93.23:0,93,1032 0/0:17,10:27:8.69:0,9,428 0/0:13,9:23:36.04:0,36,384 0/1:29,46:75:48.02:48,0,720 0/0:22,14:36:6.72:0,7,486 0/0:38,21:59:34.79:0,35,803 0/0:26,21:47:16.94:0,17,702 0/0:9,8:17:21.06:0,21,258 0/0:19,7:26:1.72:3,0,514 0/0:14,3:18:36.06:0,36,378 0/0:11,5:16:27.06:0,27,296 0/0:4,5:9:9.02:0,9,100 0/0:29,7:36:63.17:0,63,740 0/0:18,8:26:14.68:0,15,465 0/0:15,3:18:33.06:0,33,356 0/0:4,7:11:10.28:0,10,106 0/0:16,7:23:42.04:0,42,437 0/0:14,9:23:12.39:0,12,335 0/0:11,2:13:30.06:0,30,327 0/0:6,7:14:11.83:0,12,120 0/0:12,10:22:21.06:0,21,237 0/0:10,3:13:27.06:0,27,290 0/0:19,7:26:47.97:0,48,498 12 132512070 . G A 1360.53 . AC=4;AF=0.048;AN=84;BaseQRankSum=-3.900;DP=1095;Dels=0.00;FS=1.754;HRun=1;HaplotypeScore=0.8023;InbreedingCoeff=-0.0500;MQ=59.13;MQ0=0;MQRankSum=1.967;QD=13.34;ReadPosRankSum=-0.316 GT:AD:DP:GQ:PL 0/0:16,0:16:42.12:0,42,515 0/0:21,0:21:63.19:0,63,764 0/0:14,0:14:42.12:0,42,514 0/0:57,0:57:99:0,157,2060 0/0:41,0:41:99:0,117,1576 0/0:35,0:35:99:0,99,1301 0/0:24,0:24:66.19:0,66,851 0/0:25,0:25:72.23:0,72,932 0/0:17,0:17:51.15:0,51,613 0/0:19,0:19:57.17:0,57,694 0/0:12,0:12:36.11:0,36,451 0/0:19,0:19:57.16:0,57,677 0/0:14,0:14:39.10:0,39,466 0/0:23,0:23:60.18:0,60,734 0/0:74,0:74:99:0,181,2247 0/0:22,0:22:57.15:0,57,691 0/0:25,0:25:72.21:0,72,876 0/0:17,0:17:48.12:0,48,563 0/0:40,0:40:99:0,114,1370 0/0:34,0:34:99:0,99,1212 0/0:40,0:40:99:0,102,1268 0/0:25,0:25:72.21:0,72,884 0/0:64,1:65:99:0,155,2437 0/1:11,9:20:99:268,0,326 0/1:13,13:26:99:406,0,450 0/0:23,0:23:66.20:0,66,858 0/0:16,0:16:45.14:0,45,550 0/0:15,0:15:42.12:0,42,497 0/0:16,0:16:42.13:0,42,519 0/0:21,0:21:60.17:0,60,706 0/0:17,0:17:45.14:0,45,555 0/0:29,0:29:78.24:0,78,974 0/0:26,0:26:66.17:0,66,793 0/0:19,0:19:51.15:0,51,630 0/0:27,0:27:72.22:0,72,904 0/0:20,0:20:60.18:0,60,739 0/1:22,17:39:99:472,0,678 0/0:24,0:25:66.19:0,66,799 0/1:6,11:17:99:301,0,153 0/0:14,0:14:42.13:0,42,529 0/0:25,0:25:72.16:0,72,846 0/0:21,0:21:63.19:0,63,777 12 132562126 . G A 5474.99 . 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T C 3112.88 . AC=2;AF=0.024;AN=84;BaseQRankSum=-10.378;DP=4345;DS;Dels=0.00;FS=0.743;HRun=2;HaplotypeScore=2.1412;InbreedingCoeff=-0.0244;MQ=59.20;MQ0=0;MQRankSum=0.279;QD=12.60;ReadPosRankSum=-0.191 GT:AD:DP:GQ:PL 0/0:84,0:84:99:0,226,2800 0/0:68,0:68:99:0,193,2405 0/0:65,0:65:99:0,175,2142 0/0:180,0:180:99:0,439,5674 0/0:176,0:176:99:0,463,5907 0/0:111,0:111:99:0,301,3865 0/0:112,0:112:99:0,304,3864 0/0:118,0:119:99:0,319,4059 0/0:80,0:80:99:0,217,2703 0/0:56,0:56:99:0,165,2008 0/0:81,0:81:99:0,229,2815 0/0:70,0:70:99:0,196,2398 0/0:70,0:70:99:0,187,2313 0/0:75,0:76:99:0,196,2453 0/0:184,0:184:99:0,478,5906 0/0:69,0:69:99:0,199,2456 0/0:67,0:67:99:0,184,2277 0/1:38,40:78:99:1040,0,1086 0/1:84,85:169:99:2135,0,2318 0/0:192,1:194:99:0,475,6040 0/0:194,0:194:99:0,500,6209 0/0:104,0:104:99:0,295,3598 0/0:190,0:190:99:0,497,6373 0/0:94,0:94:99:0,244,3096 0/0:132,0:133:99:0,349,4449 0/0:109,0:109:99:0,280,3582 0/0:73,0:73:99:0,205,2532 0/0:95,0:95:99:0,268,3326 0/0:74,0:74:99:0,208,2548 0/0:70,0:70:99:0,193,2397 0/0:78,0:78:99:0,226,2762 0/0:170,0:170:99:0,448,5645 0/0:117,0:117:99:0,295,3669 0/0:63,0:63:99:0,178,2221 0/0:72,0:72:99:0,199,2466 0/0:71,0:71:99:0,199,2496 0/0:147,0:147:99:0,370,4644 0/0:74,0:74:99:0,199,2464 0/0:91,0:92:99:0,256,3116 0/0:87,0:87:99:0,244,2997 0/0:58,0:58:99:0,159,1979 0/0:71,0:71:99:0,196,2441 12 132624669 . G A 2989.77 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.894;DP=2713;Dels=0.00;FS=17.367;HRun=0;HaplotypeScore=2.7484;InbreedingCoeff=-0.0370;MQ=59.06;MQ0=0;MQRankSum=1.000;QD=13.06;ReadPosRankSum=0.686 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,117,1401 0/0:41,0:41:99:0,102,1242 0/0:31,0:31:81.21:0,81,965 0/0:137,0:137:99:0,352,4578 0/0:125,0:125:99:0,322,4214 0/0:115,0:115:99:0,295,3840 0/0:65,0:65:99:0,172,2263 0/0:90,0:90:99:0,220,2882 0/0:37,0:37:96.29:0,96,1199 0/0:34,0:34:93.27:0,93,1133 0/0:42,0:42:99:0,108,1365 0/0:55,0:55:99:0,126,1590 0/0:33,0:33:84.24:0,84,1036 0/0:48,0:48:99:0,120,1492 0/0:137,1:138:99:0,334,4242 0/0:54,0:54:99:0,147,1793 0/0:54,0:54:99:0,132,1644 0/0:55,0:55:99:0,141,1739 0/0:82,1:83:99:0,174,2432 0/0:111,0:111:99:0,274,3433 0/0:113,0:113:99:0,283,3534 0/0:79,0:79:99:0,184,2345 0/1:66,67:133:99:1961,0,1788 0/0:61,0:61:99:0,150,1919 0/0:90,0:90:99:0,211,2791 0/0:71,0:71:99:0,187,2389 0/0:35,0:35:93.27:0,93,1126 0/0:48,0:48:99:0,132,1636 0/0:48,0:48:99:0,117,1445 0/1:25,22:47:99:610,0,615 0/0:47,0:47:99:0,117,1436 0/0:88,0:89:99:0,241,3010 0/1:31,18:49:99:495,0,894 0/0:41,0:41:99:0,108,1287 0/0:35,0:35:90.27:0,90,1130 0/0:36,0:36:96.30:0,96,1209 0/0:94,0:94:99:0,238,2958 0/0:50,0:50:99:0,135,1656 0/0:40,0:40:99:0,117,1461 0/0:37,0:37:93.29:0,93,1172 0/0:32,0:33:84.25:0,84,1057 0/0:44,0:44:99:0,117,1425 12 132625027 . G A 1550.72 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.520;DP=3358;Dels=0.00;FS=6.464;HRun=1;HaplotypeScore=2.5064;InbreedingCoeff=-0.0244;MQ=59.19;MQ0=0;MQRankSum=-1.389;QD=12.61;ReadPosRankSum=-0.994 GT:AD:DP:GQ:PL 0/0:68,0:68:99:0,181,2260 0/0:60,0:60:99:0,178,2146 0/0:50,0:50:99:0,126,1617 0/0:152,0:153:99:0,418,5459 0/0:145,0:145:99:0,412,5438 0/0:81,0:81:99:0,223,2983 0/0:86,0:86:99:0,223,2971 0/0:100,0:100:99:0,268,3506 0/0:64,0:64:99:0,174,2151 0/0:46,0:46:99:0,129,1602 0/0:46,0:46:99:0,126,1594 0/0:53,0:53:99:0,141,1766 0/0:44,0:44:99:0,123,1524 0/0:56,0:56:99:0,153,1886 0/0:191,0:191:99:0,475,6134 0/0:62,0:62:99:0,178,2198 0/0:55,0:55:99:0,144,1779 0/0:63,0:63:99:0,169,2125 0/0:115,0:115:99:0,313,3925 0/0:125,0:125:99:0,340,4310 0/0:102,0:103:99:0,277,3431 0/0:64,0:64:99:0,169,2127 0/0:167,0:167:99:0,463,6114 0/0:94,0:94:99:0,256,3399 0/0:81,0:81:99:0,235,3038 0/0:82,0:82:99:0,214,2872 0/0:47,0:47:99:0,123,1535 0/0:67,0:67:99:0,181,2268 0/0:57,0:57:99:0,156,1944 0/0:67,0:67:99:0,181,2265 0/0:63,0:63:99:0,175,2172 0/0:131,0:131:99:0,334,4239 0/0:80,0:80:99:0,211,2694 0/0:62,0:62:99:0,181,2241 0/0:52,0:52:99:0,144,1810 0/0:67,0:67:99:0,181,2269 0/0:104,0:104:99:0,259,3214 0/0:50,0:50:99:0,132,1681 0/0:57,0:57:99:0,166,2082 0/1:31,32:63:99:881,0,881 0/1:34,26:60:99:733,0,857 0/0:77,0:77:99:0,217,2661 12 132626138 . G C 694.37 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.140;DP=1437;Dels=0.00;FS=6.734;HRun=1;HaplotypeScore=1.0659;InbreedingCoeff=-0.0244;MQ=58.95;MQ0=0;MQRankSum=-0.337;QD=9.26;ReadPosRankSum=-4.025 GT:AD:DP:GQ:PL 0/0:22,0:24:51.16:0,51,650 0/0:16,0:16:42.11:0,42,504 0/0:26,0:26:69.14:0,69,777 0/0:91,0:91:99:0,232,3001 0/0:80,0:81:99:0,202,2650 0/0:66,0:66:99:0,178,2271 0/0:44,0:44:99:0,123,1604 0/0:47,0:47:99:0,123,1584 0/0:27,0:27:75.23:0,75,928 0/0:13,1:14:36.08:0,36,399 0/0:27,0:27:63.19:0,63,792 0/0:27,0:27:60.18:0,60,729 0/0:17,0:17:45.13:0,45,524 0/0:20,0:20:60.16:0,60,708 0/1:37,27:64:99:643,0,957 0/0:34,0:34:87.25:0,87,1019 0/1:5,6:11:99:113,0,132 0/0:10,0:10:30.08:0,30,354 0/0:34,0:34:87.23:0,87,1024 0/0:54,0:54:99:0,141,1690 0/0:48,0:50:99:0,129,1591 0/0:21,0:21:57.17:0,57,700 0/0:88,0:88:99:0,238,3033 0/0:37,0:37:99:0,102,1223 0/0:51,0:51:99:0,138,1807 0/0:56,0:56:99:0,141,1802 0/0:18,0:18:51.13:0,51,598 0/0:28,0:28:69.20:0,69,821 0/0:29,0:29:78.22:0,78,931 0/0:24,0:25:66.19:0,66,785 0/0:22,0:22:60.17:0,60,713 0/0:50,0:50:99:0,123,1520 0/0:27,0:27:66.16:0,66,795 0/0:15,0:16:45.13:0,45,530 0/0:18,0:18:48.14:0,48,593 0/0:25,0:25:69.18:0,69,826 0/0:44,0:44:99:0,120,1424 0/0:17,0:17:39.11:0,39,471 0/0:16,0:16:45.14:0,45,545 0/0:25,0:25:72.20:0,72,829 0/0:17,0:17:48.13:0,48,560 0/0:23,0:23:51.16:0,51,639 12 132631855 . C T 434.37 . AC=10;AF=0.119;AN=84;BaseQRankSum=-1.013;DP=292;Dels=0.00;FS=5.259;HRun=2;HaplotypeScore=0.2552;InbreedingCoeff=0.1765;MQ=59.52;MQ0=0;MQRankSum=1.149;QD=9.87;ReadPosRankSum=-2.764 GT:AD:DP:GQ:PL 0/0:7,0:7:21.04:0,21,236 0/0:9,0:9:24.07:0,24,291 0/0:9,0:9:24.03:0,24,267 0/1:5,5:10:99:121,0,152 0/0:10,0:10:27.09:0,27,355 0/0:4,0:4:12.04:0,12,162 0/0:2,0:2:3.01:0,3,42 0/0:6,0:6:18.06:0,18,233 0/0:7,0:7:18.05:0,18,222 0/0:6,0:6:18.05:0,18,217 0/0:6,0:6:18.05:0,18,219 0/1:1,1:2:30.96:31,0,33 0/1:0,2:2:0.97:70,6,0 0/1:1,2:3:29.55:62,0,30 0/0:27,0:27:69.20:0,69,844 0/0:9,0:9:24.07:0,24,298 0/0:8,0:8:21.06:0,21,261 0/0:4,0:4:12.03:0,12,136 0/0:7,0:7:18.04:0,18,206 0/0:7,0:7:21.06:0,21,244 0/0:13,0:13:33.08:0,33,385 0/1:6,1:7:14.19:14,0,200 0/1:5,2:7:52.89:53,0,172 0/0:3,0:3:9.02:0,9,106 0/0:9,0:9:24.08:0,24,309 0/0:3,0:3:9.03:0,9,118 0/0:3,0:3:9.03:0,9,108 0/1:3,1:4:22.32:22,0,90 0/1:3,2:5:57.19:57,0,90 0/0:9,0:9:21.06:0,21,256 0/0:9,0:9:21.06:0,21,259 0/0:8,0:8:18.04:0,18,203 0/0:5,0:5:15.04:0,15,178 0/0:8,0:8:24.08:0,24,300 0/0:7,0:7:21.06:0,21,242 1/1:0,4:4:12.04:143,12,0 0/0:11,0:11:21.06:0,21,280 0/0:4,0:4:12.04:0,12,154 0/0:3,0:3:9.02:0,9,104 0/0:7,0:7:21.06:0,21,245 0/0:6,0:6:15.05:0,15,195 0/0:12,0:12:33.10:0,33,403 12 132636135 . C T 5.97 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.019;DP=541;Dels=0.00;FS=5.651;HRun=1;HaplotypeScore=0.6921;InbreedingCoeff=-0.0258;MQ=58.49;MQ0=0;MQRankSum=-0.315;QD=0.54;ReadPosRankSum=-0.745 GT:AD:DP:GQ:PL 0/0:10,0:10:24.07:0,24,292 0/0:12,0:12:33.10:0,33,396 0/0:10,0:10:24.07:0,24,294 0/0:26,0:26:72.23:0,72,946 0/0:28,0:28:78.26:0,78,1058 0/0:21,0:21:57.16:0,57,724 0/0:10,0:10:30.10:0,30,408 0/0:14,0:14:39.13:0,39,505 0/0:11,0:11:24.08:0,24,308 0/0:14,0:14:42.13:0,42,518 0/0:13,0:13:39.11:0,39,465 0/0:6,0:6:15.05:0,15,194 0/0:8,0:8:24.08:0,24,299 0/0:13,0:13:33.10:0,33,420 0/0:25,0:25:69.20:0,69,837 0/0:10,0:10:30.09:0,30,372 0/0:8,0:8:24.08:0,24,300 0/0:10,0:10:30.09:0,30,359 0/0:12,0:12:33.10:0,33,406 0/0:17,0:17:48.15:0,48,603 0/0:20,0:20:48.14:0,48,586 0/0:9,0:9:24.07:0,24,294 0/0:33,0:33:84.27:0,84,1129 0/0:12,0:12:24.07:0,24,310 0/0:18,0:18:54.16:0,54,695 0/0:13,0:13:36.11:0,36,466 0/1:1,1:2:30.96:31,0,33 0/0:12,0:12:36.11:0,36,445 0/1:7,2:9:35.92:36,0,236 0/0:10,0:10:30.09:0,30,374 0/0:9,0:9:27.09:0,27,342 0/0:22,0:22:60.17:0,60,741 0/0:4,0:4:12.04:0,12,149 0/0:8,0:8:24.08:0,24,306 0/0:11,0:11:30.09:0,30,375 0/0:8,0:8:21.07:0,21,267 0/0:15,0:15:45.14:0,45,559 0/0:8,0:8:24.07:0,24,284 0/0:12,0:12:36.10:0,36,433 0/0:8,0:8:21.07:0,21,262 0/0:9,0:9:27.09:0,27,345 0/0:11,0:11:30.09:0,30,365 12 133196596 . T C 5699.04 . AC=47;AF=0.573;AN=82;BaseQRankSum=-2.101;DP=329;Dels=0.00;FS=2.498;HRun=1;HaplotypeScore=0.1165;InbreedingCoeff=0.0798;MQ=58.85;MQ0=0;MQRankSum=-0.144;QD=21.92;ReadPosRankSum=0.142 GT:AD:DP:GQ:PL 1/1:0,5:5:9.02:98,9,0 0/0:5,0:5:15.05:0,15,185 0/1:6,3:9:66.57:67,0,194 1/1:0,12:12:36.11:444,36,0 1/1:0,14:14:42.11:511,42,0 0/1:2,3:5:57.74:93,0,58 0/1:2,3:5:35.74:76,0,36 0/1:4,7:11:99:176,0,121 0/1:5,4:9:99:124,0,156 1/1:0,4:4:9.02:98,9,0 0/1:4,3:7:66.71:67,0,131 1/1:0,3:3:6.02:75,6,0 0/1:2,2:4:35.73:60,0,36 0/1:5,2:7:46.94:47,0,143 0/1:12,9:21:99:227,0,321 0/0:10,0:10:30.08:0,30,352 0/1:1,1:2:20.66:21,0,33 0/1:1,6:7:19.75:157,0,20 1/1:0,8:8:24.06:274,24,0 0/1:7,13:20:99:343,0,158 0/1:6,3:9:81.61:82,0,144 1/1:0,13:13:27.09:361,27,0 1/1:0,12:12:33.10:425,33,0 1/1:0,5:5:15.04:173,15,0 0/1:5,7:12:99:241,0,162 1/1:0,5:5:12.03:148,12,0 0/0:2,0:2:6.02:0,6,74 0/0:1,0:1:3.01:0,3,37 1/1:0,9:9:18.05:219,18,0 1/1:0,2:2:6.02:77,6,0 1/1:0,3:3:9.03:108,9,0 0/0:20,0:20:42.14:0,42,567 0/1:5,3:8:74.35:74,0,161 0/1:2,2:4:57.31:59,0,57 ./. 1/1:0,7:7:18.06:239,18,0 0/1:2,8:10:44.61:261,0,45 0/0:10,0:10:24.08:0,24,307 1/1:0,8:8:24.06:274,24,0 0/0:4,0:4:12.04:0,12,144 0/0:11,0:11:30.07:0,30,367 0/0:6,0:6:18.05:0,18,215 12 133201312 . G C 607.55 . AC=14;AF=0.167;AN=84;BaseQRankSum=-17.053;DP=1723;Dels=0.00;FS=1491.974;HRun=1;HaplotypeScore=1.0766;InbreedingCoeff=-0.2150;MQ=58.53;MQ0=0;MQRankSum=2.173;QD=1.00;ReadPosRankSum=-18.066 GT:AD:DP:GQ:PL 0/0:23,7:30:36.70:0,37,790 0/1:20,9:29:7.10:7,0,652 0/0:14,8:22:17.47:0,17,494 0/1:55,46:101:99:229,0,1788 0/0:56,37:94:33.13:0,33,1782 0/0:36,30:66:1.78:3,0,1270 0/0:30,12:43:18.96:0,19,1008 0/0:50,16:66:75.05:0,75,1676 0/0:21,7:28:18.55:0,19,591 0/0:18,5:23:33.85:0,34,637 0/0:13,0:13:39.13:0,39,498 0/1:15,7:22:38.67:39,0,441 0/0:14,7:21:42.13:0,42,524 0/1:21,10:31:6.67:7,0,701 0/0:60,24:84:33.56:0,34,1893 0/1:19,9:28:58.57:59,0,604 0/1:21,11:32:26.54:27,0,628 0/0:12,4:16:8.52:0,9,419 0/1:30,15:45:76.02:76,0,912 0/1:54,26:80:12.41:12,0,1708 0/1:45,20:65:58.83:59,0,1321 0/1:36,14:50:21.63:22,0,1120 0/0:80,28:108:13.60:0,14,2774 0/1:33,22:55:62.92:63,0,1097 0/0:52,23:75:22.32:0,22,1826 0/0:37,17:54:47.97:0,48,1309 0/0:11,4:15:30.09:0,30,373 0/1:8,4:12:6.20:6,0,237 0/0:16,8:24:17.55:0,18,531 0/0:26,11:37:42.07:0,42,838 0/0:21,4:25:10.04:0,10,750 0/0:41,19:60:98.68:0,99,1446 0/0:25,8:33:41.93:0,42,817 0/1:21,12:33:99:120,0,689 0/0:15,7:22:14.19:0,14,492 0/0:19,6:25:19.38:0,19,634 0/0:31,9:40:8.10:0,8,955 0/0:18,4:22:51.16:0,51,648 0/0:19,6:25:30.57:0,31,699 0/0:23,3:26:35.78:0,36,797 0/0:13,6:19:3.86:0,4,409 0/1:17,7:24:25.76:26,0,546 12 133219254 . G C 451.78 . AC=16;AF=0.190;AN=84;BaseQRankSum=-10.808;DP=2273;Dels=0.00;FS=1394.472;HRun=2;HaplotypeScore=2.9173;InbreedingCoeff=-0.2352;MQ=58.60;MQ0=0;MQRankSum=1.123;QD=0.55;ReadPosRankSum=-18.420 GT:AD:DP:GQ:PL 0/1:30,15:45:15.24:15,0,876 0/1:30,12:42:37.94:38,0,894 0/0:29,10:39:87.24:0,87,1034 0/0:71,30:101:33.32:0,33,2327 0/1:62,14:76:18.67:19,0,2089 0/1:51,16:68:25.50:25,0,1582 0/0:30,9:39:42.13:0,42,926 0/0:47,9:56:66.08:0,66,1626 0/0:27,11:38:14.18:0,14,848 0/1:22,10:32:29.47:29,0,673 0/0:27,10:37:19.27:0,19,894 0/1:30,14:46:23.49:23,0,911 0/0:35,9:44:31.60:0,32,1065 0/1:27,10:37:35.04:35,0,762 0/0:81,30:111:33.08:0,33,2520 0/0:33,8:41:25.18:0,25,949 0/0:35,5:40:75.82:0,76,1234 0/1:21,10:31:33.02:33,0,618 0/0:64,14:79:70.35:0,70,1898 0/0:72,17:90:69.86:0,70,2390 0/0:69,18:88:38.30:0,38,1977 0/0:39,13:52:65.39:0,65,1165 0/1:56,24:81:24.02:24,0,1800 0/0:35,5:40:96.27:0,96,1210 0/0:48,12:60:44.71:0,45,1705 0/0:33,14:47:50.53:0,51,1124 0/1:20,6:26:5.19:5,0,654 0/0:33,7:40:5.16:0,5,1040 0/0:38,13:52:48.97:0,49,1328 0/1:37,12:49:74.40:74,0,1047 0/1:34,12:46:61.21:61,0,1007 0/1:68,26:94:18.74:19,0,2017 0/0:53,13:67:22.28:0,22,1603 0/1:27,16:43:80.68:81,0,765 0/1:32,17:49:63.98:64,0,964 0/0:32,9:41:26.26:0,26,1007 0/0:71,4:75:99:0,156,2133 0/1:34,17:51:63.39:63,0,949 0/0:37,11:48:53.09:0,53,1236 0/0:39,8:47:40.06:0,40,1148 0/0:35,8:43:43.14:0,43,1106 0/0:24,10:34:65.88:0,66,743 12 133233980 . T C 21.50 . AC=1;AF=0.012;AN=84;BaseQRankSum=-9.366;DP=1965;Dels=0.00;FS=74.924;HRun=3;HaplotypeScore=1.8232;InbreedingCoeff=-0.0191;MQ=58.86;MQ0=0;MQRankSum=-1.289;QD=0.29;ReadPosRankSum=-7.531 GT:AD:DP:GQ:PL 0/0:23,8:31:35.48:0,35,666 0/0:26,5:32:63.17:0,63,716 0/0:20,6:26:20.43:0,20,436 0/0:93,21:115:99:0,189,2133 0/0:89,21:110:99:0,207,2289 0/0:60,16:77:75.90:0,76,1333 0/0:40,6:46:87.16:0,87,970 0/0:52,13:66:99:0,100,1422 0/0:20,5:25:48.12:0,48,532 0/0:26,7:33:63.17:0,63,719 0/0:22,6:29:2.12:0,2,602 0/0:24,3:27:47.17:0,47,566 0/0:19,6:25:22.60:0,23,555 0/0:36,2:38:87.23:0,87,992 0/0:85,24:110:86.70:0,87,2071 0/0:24,4:29:57.15:0,57,647 0/0:17,3:20:36.10:0,36,422 0/0:22,7:29:29.54:0,30,607 0/0:37,13:50:99:0,99,1175 0/0:67,7:75:99:0,101,1690 0/1:52,21:74:67.59:68,0,1370 0/0:36,2:38:81.19:0,81,901 0/0:84,11:95:99:0,154,1964 0/0:66,10:76:99:0,106,1578 0/0:57,11:68:99:0,123,1404 0/0:42,10:52:99:0,105,1064 0/0:20,5:25:32.44:0,32,562 0/0:19,5:24:28.41:0,28,506 0/0:22,6:28:54.17:0,54,661 0/0:21,4:25:48.14:0,48,559 0/0:33,8:41:81.21:0,81,919 0/0:68,10:79:99:0,153,1800 0/0:46,10:56:79.59:0,80,1134 0/0:23,6:29:63.15:0,63,695 0/0:28,0:28:66.16:0,66,732 0/0:18,3:22:36.10:0,36,420 0/0:48,6:55:99:0,123,1457 0/0:29,9:38:60.17:0,60,696 0/0:19,4:24:6.61:0,7,386 0/0:18,3:21:36.10:0,36,428 0/0:31,2:33:60.15:0,60,686 0/0:30,10:41:50.39:0,50,773 12 133240967 . G A 855.65 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.350;DP=2434;Dels=0.00;FS=1.451;HRun=1;HaplotypeScore=1.7018;InbreedingCoeff=-0.0120;MQ=58.10;MQ0=0;MQRankSum=2.983;QD=12.96;ReadPosRankSum=0.823 GT:AD:DP:GQ:PL 0/0:46,0:48:99:0,120,1334 0/0:37,0:37:96.27:0,96,1119 0/0:53,0:53:99:0,147,1687 0/0:107,0:107:99:0,271,3353 0/0:102,0:103:99:0,265,3205 0/0:82,0:82:99:0,214,2624 0/1:34,32:66:99:902,0,861 0/0:57,0:57:99:0,144,1772 0/0:52,0:52:99:0,141,1672 0/0:41,0:41:99:0,111,1253 0/0:36,0:36:99:0,102,1163 0/0:45,0:45:99:0,123,1431 0/0:47,0:47:99:0,126,1489 0/0:43,0:43:99:0,105,1253 0/0:135,0:136:99:0,349,3998 0/0:48,0:48:99:0,135,1545 0/0:43,0:43:99:0,114,1283 0/0:36,0:36:90.24:0,90,1054 0/0:85,1:86:99:0,214,2449 0/0:106,0:106:99:0,268,3098 0/0:92,0:92:99:0,241,2782 0/0:76,0:77:99:0,195,2232 0/0:110,0:110:99:0,277,3436 0/0:39,0:39:99:0,105,1312 0/0:60,0:60:99:0,135,1726 0/0:52,0:52:99:0,138,1728 0/0:38,0:38:93.24:0,93,1089 0/0:40,0:40:99:0,102,1175 0/0:28,1:29:72.20:0,72,847 0/0:37,0:37:99:0,99,1143 0/0:40,0:40:99:0,108,1238 0/0:91,0:91:99:0,244,2838 0/0:69,0:69:99:0,177,2031 0/0:35,0:35:99:0,102,1133 0/0:35,0:35:93.26:0,93,1085 0/0:65,0:65:99:0,177,2022 0/0:80,0:81:99:0,211,2390 0/0:46,0:46:99:0,132,1455 0/0:29,0:29:81.21:0,81,922 0/0:30,0:30:84.18:0,84,939 0/0:30,0:30:75.19:0,75,867 0/0:37,0:37:99:0,102,1204 12 133253995 . G A 10722.44 . AC=9;AF=0.107;AN=84;BaseQRankSum=-13.489;DP=3267;Dels=0.00;FS=14.268;HRun=4;HaplotypeScore=1.3081;InbreedingCoeff=-0.1200;MQ=59.26;MQ0=0;MQRankSum=-0.798;QD=13.76;ReadPosRankSum=-0.279 GT:AD:DP:GQ:PL 0/0:82,0:82:99:0,199,2528 0/0:76,0:76:99:0,205,2501 0/0:57,0:57:99:0,156,1899 0/0:115,0:115:99:0,301,3975 0/0:120,0:120:99:0,307,4038 0/0:100,0:100:99:0,256,3374 0/0:111,0:111:99:0,283,3663 0/0:91,1:92:99:0,235,3083 0/0:59,0:59:99:0,159,1991 0/0:55,0:55:99:0,144,1795 0/0:66,0:66:99:0,181,2235 0/1:26,30:56:99:855,0,582 0/1:25,31:56:99:908,0,692 0/0:67,0:67:99:0,181,2269 0/1:89,95:184:99:2495,0,2415 0/0:52,0:52:99:0,141,1749 0/1:31,38:69:99:1090,0,912 0/0:70,0:70:99:0,193,2418 0/0:59,0:59:99:0,169,2095 0/0:81,0:81:99:0,226,2821 0/0:83,0:83:99:0,223,2792 0/0:54,0:54:99:0,141,1776 0/0:157,0:157:99:0,403,5276 0/1:52,47:99:99:1291,0,1572 0/1:66,49:116:99:1275,0,1893 0/0:83,0:83:99:0,211,2800 0/0:55,0:55:99:0,135,1683 0/1:32,31:63:99:815,0,990 0/0:70,0:70:99:0,187,2327 0/0:72,1:73:99:0,196,2410 0/0:57,0:57:99:0,156,1983 0/0:74,0:74:99:0,193,2461 0/0:64,0:64:99:0,174,2117 0/0:67,0:67:99:0,181,2233 0/1:33,33:66:99:931,0,921 0/1:32,37:69:99:1062,0,860 0/0:76,0:76:99:0,193,2415 0/0:63,0:63:99:0,178,2194 0/0:48,0:48:99:0,135,1656 0/0:71,0:71:99:0,199,2460 0/0:70,0:70:99:0,187,2295 0/0:61,0:61:99:0,156,1955 12 133263886 . C G 31.05 . AC=1;AF=0.025;AN=40;BaseQRankSum=-0.405;DP=46;Dels=0.00;FS=2.534;HRun=1;HaplotypeScore=0.0394;InbreedingCoeff=0.1298;MQ=57.75;MQ0=0;MQRankSum=-0.072;QD=10.35;ReadPosRankSum=0.501 GT:AD:DP:GQ:PL ./. 0/1:0,3:3:0.97:78,6,0 ./. ./. ./. ./. 0/0:2,0:2:6:0,6,60 ./. 0/0:1,0:1:3.01:0,3,37 ./. ./. 0/0:3,0:3:9.02:0,9,102 ./. 0/0:2,0:2:3.01:0,3,45 0/0:5,0:5:15.04:0,15,172 ./. 0/0:2,0:2:6.02:0,6,76 ./. ./. 0/0:3,0:3:6.02:0,6,75 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.02:0,9,100 ./. 0/0:1,0:1:3.01:0,3,35 ./. ./. ./. ./. 0/0:2,0:2:6.02:0,6,70 ./. 0/0:1,0:1:3.01:0,3,38 0/0:4,0:4:9.03:0,9,112 0/0:1,0:1:3.01:0,3,32 ./. ./. 0/0:2,0:2:6.01:0,6,56 0/0:3,0:3:6.02:0,6,76 ./. 0/0:3,0:3:6.02:0,6,78 ./. 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,76 12 133272470 . G T 5758.18 . AC=9;AF=0.107;AN=84;BaseQRankSum=-8.486;DP=1887;Dels=0.00;FS=2.182;HRun=2;HaplotypeScore=1.0259;InbreedingCoeff=-0.1200;MQ=59.05;MQ0=0;MQRankSum=0.279;QD=13.39;ReadPosRankSum=0.051 GT:AD:DP:GQ:PL 0/0:29,0:29:78.22:0,78,952 0/0:35,0:35:99:0,99,1221 0/0:31,0:31:84.26:0,84,1050 0/0:60,0:60:99:0,156,2102 0/0:65,0:65:99:0,184,2432 0/0:51,0:51:99:0,138,1808 0/0:47,0:47:99:0,129,1708 0/0:50,0:50:99:0,132,1747 0/0:27,0:27:72.22:0,72,910 0/0:35,0:35:93.29:0,93,1175 0/0:28,0:28:75.22:0,75,935 0/1:28,14:42:99:328,0,758 0/1:15,21:37:99:577,0,437 0/0:43,0:43:99:0,120,1495 0/1:59,81:140:99:2167,0,1637 0/0:36,1:37:78.70:0,79,1247 0/1:16,20:36:99:493,0,437 0/0:26,0:26:72.22:0,72,892 0/0:62,0:62:99:0,169,2057 0/0:71,0:71:99:0,184,2308 0/0:69,1:70:99:0,178,2182 0/0:40,0:40:99:0,114,1367 0/0:69,0:69:99:0,181,2396 0/1:15,13:28:99:413,0,485 0/1:26,15:41:99:360,0,793 0/0:38,0:38:99:0,99,1305 0/0:29,0:29:84.25:0,84,1037 0/1:20,16:36:99:454,0,536 0/0:44,0:44:99:0,114,1447 0/0:32,0:32:87.27:0,87,1094 0/0:29,0:29:84.25:0,84,1031 0/0:69,0:70:99:0,181,2295 0/0:45,0:45:99:0,117,1436 0/0:37,1:38:99:0,105,1262 0/1:14,19:33:99:545,0,412 0/1:19,18:37:99:421,0,551 0/0:81,0:81:99:0,211,2586 0/0:46,0:46:99:0,132,1622 0/0:34,0:34:87.27:0,87,1085 0/0:37,0:37:99:0,99,1214 0/0:30,0:30:87.24:0,87,1060 0/0:28,0:28:81.25:0,81,1009 12 133354262 . C T 203.83 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.137;DP=1017;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.6480;InbreedingCoeff=-0.0126;MQ=59.05;MQ0=0;MQRankSum=0.247;QD=18.53;ReadPosRankSum=1.475 GT:AD:DP:GQ:PL 0/0:19,0:19:54.14:0,54,605 0/0:18,0:18:54.15:0,54,627 0/0:20,0:20:51.13:0,51,569 0/0:85,0:85:99:0,220,2590 0/0:42,0:42:99:0,114,1389 0/0:40,0:40:96.29:0,96,1204 0/0:44,0:44:99:0,117,1409 0/0:27,0:28:81.22:0,81,932 0/0:7,0:7:21.06:0,21,241 0/0:16,0:16:42.11:0,42,483 0/0:12,0:12:33.06:0,33,372 0/0:14,0:14:39.08:0,39,434 0/0:5,0:5:15.04:0,15,164 0/0:14,0:14:39.10:0,39,439 0/0:55,0:55:99:0,141,1607 0/1:2,9:11:47.07:250,0,47 0/0:20,0:20:60.16:0,60,687 0/0:9,0:9:27.07:0,27,308 0/0:26,0:26:66.17:0,66,759 0/0:28,0:28:78.22:0,78,916 0/0:21,0:21:57.13:0,57,647 0/0:21,0:21:57.15:0,57,661 0/0:65,0:65:99:0,168,2039 0/0:38,0:38:99:0,99,1208 0/0:40,0:40:99:0,105,1258 0/0:28,0:28:81.24:0,81,967 0/0:13,0:13:33.08:0,33,367 0/0:16,0:16:42.11:0,42,477 0/0:14,0:14:42.10:0,42,465 0/0:23,0:23:66.17:0,66,716 0/0:10,0:10:30.06:0,30,326 0/0:35,0:35:93.23:0,93,1073 0/0:33,1:34:60.75:0,61,1001 0/0:18,0:18:54.13:0,54,605 0/0:17,0:17:48.12:0,48,533 0/0:13,0:13:39.10:0,39,426 0/0:21,0:21:54.15:0,54,619 0/0:14,0:14:39.10:0,39,436 0/0:21,0:21:54.13:0,54,641 0/0:9,0:9:27.08:0,27,317 0/0:17,0:17:48.12:0,48,530 0/0:16,0:16:48.13:0,48,544 12 133354313 . T C 2279.12 . AC=5;AF=0.060;AN=84;BaseQRankSum=9.355;DP=952;Dels=0.00;FS=4.088;HRun=1;HaplotypeScore=0.9055;InbreedingCoeff=0.3617;MQ=59.12;MQ0=0;MQRankSum=1.651;QD=18.68;ReadPosRankSum=0.155 GT:AD:DP:GQ:PL 0/0:26,0:26:75.22:0,75,897 0/0:18,0:18:51.16:0,51,621 0/0:16,0:16:42.13:0,42,525 0/1:26,31:57:99:969,0,698 0/1:16,21:37:99:674,0,446 0/0:31,0:31:90.29:0,90,1148 0/0:29,0:29:84.26:0,84,1050 0/0:34,0:34:99:0,102,1227 0/0:11,0:11:33.10:0,33,397 0/0:14,0:14:39.12:0,39,469 0/0:14,0:14:42.12:0,42,499 0/1:6,7:13:99:209,0,178 0/0:12,0:12:36.09:0,36,420 1/1:0,15:15:42.13:530,42,0 0/0:56,0:56:99:0,150,1808 0/0:11,0:11:33.10:0,33,397 0/0:22,0:22:60.18:0,60,718 0/0:14,0:14:42.13:0,42,500 0/0:37,0:37:96.28:0,96,1173 0/0:32,0:32:90.27:0,90,1090 0/0:30,0:30:81.25:0,81,994 0/0:24,0:24:66.18:0,66,782 0/0:39,0:39:99:0,114,1380 0/0:23,0:23:66.20:0,66,813 0/0:30,0:30:84.26:0,84,1051 0/0:18,0:18:54.15:0,54,631 0/0:17,0:17:51.14:0,51,600 0/0:21,0:21:54.17:0,54,662 0/0:12,0:12:36.11:0,36,436 0/0:14,0:14:42.11:0,42,493 0/0:14,0:14:42.12:0,42,496 0/0:36,0:36:81.24:0,81,1019 0/0:19,0:19:57.17:0,57,684 0/0:18,0:18:48.15:0,48,588 0/0:21,0:21:60.16:0,60,707 0/0:12,0:12:36.11:0,36,435 0/0:22,0:22:57.17:0,57,689 0/0:23,0:23:69.20:0,69,807 0/0:16,0:16:45.14:0,45,543 0/0:11,0:11:33.10:0,33,400 0/0:17,0:17:45.11:0,45,549 0/0:16,0:16:48.15:0,48,576 12 133363006 . G A 7803.77 . AC=26;AF=0.310;AN=84;BaseQRankSum=4.976;DP=894;Dels=0.00;FS=1.529;HRun=1;HaplotypeScore=0.6802;InbreedingCoeff=0.1468;MQ=58.65;MQ0=0;MQRankSum=3.922;QD=17.90;ReadPosRankSum=1.509 GT:AD:DP:GQ:PL 1/1:0,16:16:42.12:496,42,0 1/1:0,12:12:36.11:432,36,0 0/1:1,11:12:2.72:333,1,0 0/1:18,20:38:99:579,0,530 0/1:33,26:59:99:708,0,978 0/1:12,17:29:99:528,0,296 0/0:29,0:29:81.21:0,81,969 0/1:19,11:30:99:234,0,582 0/1:9,9:18:99:224,0,239 1/1:0,16:16:48.14:567,48,0 0/1:8,6:14:99:179,0,232 0/1:8,9:17:99:242,0,228 0/0:9,0:9:21.05:0,21,227 1/1:0,21:21:63.19:744,63,0 0/0:56,0:56:99:0,144,1544 0/0:24,0:24:66.18:0,66,764 0/0:16,0:16:48.10:0,48,518 0/0:15,0:15:42.09:0,42,463 0/1:9,8:17:99:237,0,210 0/1:15,15:30:99:468,0,376 0/0:26,0:26:72.13:0,72,786 0/0:23,1:24:32.73:0,33,687 0/0:42,1:43:83.36:0,83,1380 0/0:28,0:29:75.20:0,75,913 0/0:37,0:37:99:0,108,1276 0/0:19,0:19:54.16:0,54,668 0/1:10,9:19:99:248,0,264 0/0:9,0:9:27.04:0,27,285 1/1:0,13:13:33.10:398,33,0 0/0:15,0:15:42.07:0,42,446 0/0:15,0:15:45.11:0,45,513 0/0:18,0:18:48.13:0,48,540 0/1:7,12:19:99:372,0,181 0/1:9,9:18:99:281,0,145 0/0:11,0:11:30.08:0,30,343 0/1:6,4:10:99:116,0,138 0/1:6,8:14:99:243,0,126 0/1:8,6:14:99:174,0,225 0/0:16,0:16:42.08:0,42,459 0/0:12,0:12:36.09:0,36,399 0/0:18,1:19:17.16:0,17,533 0/0:16,0:16:45.12:0,45,509 12 133378440 . C T 20545.72 . AC=23;AF=0.274;AN=84;BaseQRankSum=-30.689;DP=3013;Dels=0.00;FS=0.577;HRun=0;HaplotypeScore=2.3490;InbreedingCoeff=-0.1376;MQ=59.15;MQ0=0;MQRankSum=0.445;QD=15.13;ReadPosRankSum=1.576 GT:AD:DP:GQ:PL 0/0:55,1:56:99:0,125,1890 0/0:51,0:51:99:0,141,1769 0/0:41,0:41:99:0,123,1497 0/0:181,0:185:99:0,527,6891 0/0:172,0:172:99:0,506,6648 0/0:111,0:111:99:0,319,4177 0/0:88,1:89:99:0,227,3325 0/1:63,56:119:99:1506,0,2001 0/1:23,24:47:99:562,0,590 0/0:38,0:38:99:0,114,1409 0/1:21,24:45:99:625,0,608 0/0:50,0:50:99:0,132,1612 0/1:17,16:33:99:457,0,505 0/0:52,0:52:99:0,135,1700 0/1:47,57:105:99:1424,0,1298 0/1:27,33:60:99:891,0,703 0/0:43,1:44:92.04:0,92,1495 1/1:0,33:34:90.22:1019,90,0 0/1:45,45:92:99:1115,0,1222 0/1:56,66:123:99:1772,0,1478 0/0:69,0:69:99:0,193,2356 0/0:86,2:88:99:0,164,2777 0/0:176,0:176:99:0,503,6755 0/0:74,1:75:99:0,169,2642 0/1:44,65:109:99:1802,0,1314 0/0:95,0:95:99:0,268,3577 0/1:19,18:38:99:502,0,538 0/1:17,20:37:99:558,0,492 0/0:40,0:40:99:0,111,1385 0/1:17,30:48:99:794,0,440 0/1:17,21:39:99:534,0,419 0/1:37,59:96:99:1563,0,837 0/0:82,1:83:99:0,197,2824 0/0:46,0:46:99:0,132,1668 0/0:45,1:47:99:0,101,1546 0/1:17,20:37:99:573,0,460 0/1:41,43:84:99:1171,0,1129 0/0:47,0:47:99:0,135,1679 0/1:34,27:61:99:719,0,1058 0/1:24,26:50:99:675,0,704 0/1:23,29:52:99:758,0,623 1/1:0,48:49:99:1526,135,0 12 133378465 . G A 934.89 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.512;DP=2076;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.2872;InbreedingCoeff=-0.0244;MQ=58.86;MQ0=0;MQRankSum=-0.365;QD=7.99;ReadPosRankSum=-1.230 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,108,1276 0/0:39,0:40:99:0,108,1238 0/0:22,0:22:60.17:0,60,707 0/0:132,0:134:99:0,373,4673 0/0:107,0:108:99:0,289,3677 0/0:60,0:60:99:0,156,1988 0/0:50,0:50:99:0,144,1850 0/0:63,0:65:99:0,172,2131 0/0:35,0:35:96.27:0,96,1162 0/0:32,0:32:90.24:0,90,1055 0/0:33,0:33:96.28:0,96,1152 0/0:40,0:40:99:0,105,1249 0/0:28,0:28:81.24:0,81,954 0/0:43,0:43:99:0,108,1285 0/0:81,0:81:99:0,217,2520 0/0:47,0:47:99:0,135,1625 0/0:27,0:27:75.22:0,75,907 0/0:23,0:23:63.18:0,63,743 0/0:66,0:66:99:0,178,2121 0/0:79,0:82:99:0,220,2612 0/1:33,20:53:99:487,0,976 0/0:57,0:57:99:0,144,1745 0/0:107,0:107:99:0,307,3920 0/0:55,0:55:99:0,150,1937 0/0:56,0:56:99:0,153,1945 0/0:55,0:55:99:0,156,1918 0/0:26,0:26:75.20:0,75,882 0/0:32,0:32:81.23:0,81,965 0/0:21,0:21:60.18:0,60,711 0/0:37,0:37:99:0,111,1321 0/0:42,0:42:99:0,120,1439 0/1:43,21:64:99:511,0,1218 0/0:60,0:60:99:0,159,1928 0/0:27,0:27:72.20:0,72,832 0/0:32,0:32:90.26:0,90,1068 0/0:34,0:34:99:0,99,1143 0/0:72,0:74:99:0,190,2290 0/0:30,0:30:87.25:0,87,1024 0/0:46,1:47:99:0,103,1498 0/0:36,0:36:99:0,102,1201 0/0:38,0:38:99:0,105,1253 0/0:37,0:37:96.28:0,96,1173 12 133393235 . A C 45.10 . AC=3;AF=0.036;AN=84;BaseQRankSum=-23.007;DP=2639;Dels=0.00;FS=773.477;HRun=2;HaplotypeScore=1.5843;InbreedingCoeff=-0.0703;MQ=59.18;MQ0=0;MQRankSum=0.235;QD=0.30;ReadPosRankSum=-15.811 GT:AD:DP:GQ:PL 0/1:30,22:52:43.69:44,0,950 0/0:33,22:55:20.55:0,21,1036 0/0:33,19:52:47.49:0,47,1065 0/0:98,54:152:99:0,152,3473 0/0:86,36:122:99:0,226,3223 0/0:68,25:94:99:0,137,2315 0/0:39,21:61:83.01:0,83,1410 0/0:77,28:105:99:0,225,2735 0/0:33,16:49:67.82:0,68,1044 0/0:27,11:39:47.80:0,48,883 0/0:27,15:42:81.25:0,81,996 0/0:45,18:63:67.89:0,68,1451 0/0:24,10:34:71.01:0,71,832 0/0:25,13:38:10.26:0,10,743 0/0:98,19:117:99:0,254,3343 0/1:28,10:38:13.13:13,0,709 0/0:34,15:49:98.47:0,98,1134 0/0:21,11:32:54.13:0,54,625 0/1:40,22:62:57.40:57,0,1137 0/0:52,26:78:99:0,120,1651 0/0:56,27:84:76.56:0,77,1701 0/0:32,16:48:30.07:0,30,962 0/0:103,43:146:99:0,212,3525 0/0:59,25:84:92.93:0,93,2103 0/0:66,28:94:99:0,159,2361 0/0:55,23:79:99:0,150,1903 0/0:24,19:43:24.82:0,25,770 0/0:33,15:48:68.48:0,68,1093 0/0:28,14:42:51.61:0,52,905 0/0:30,15:45:11.59:0,12,964 0/0:29,12:41:55.69:0,56,964 0/0:49,30:79:89:0,89,1533 0/0:24,17:41:34.37:0,34,767 0/0:33,22:55:1.27:5,0,973 0/0:25,11:36:72.21:0,72,870 0/0:28,18:46:54.53:0,55,907 0/0:40,29:69:1.05:6,0,1150 0/0:30,16:46:28.28:0,28,941 0/0:28,13:41:51.03:0,51,842 0/0:32,27:59:0.63:8,0,996 0/0:27,12:39:43.83:0,44,822 0/0:19,21:40:30.56:0,31,668 12 133393235 . A AC 228.68 . AC=10;AF=0.119;AN=84;BaseQRankSum=9.384;DP=2778;FS=1525.633;HRun=2;HaplotypeScore=216.1326;InbreedingCoeff=-0.1628;MQ=59.13;MQ0=0;MQRankSum=-0.558;QD=0.38;ReadPosRankSum=-23.974 GT:AD:DP:GQ:PL 0/1:54,0:54:25.21:25,0,986 0/1:60,0:60:14.66:15,0,957 0/0:56,0:56:31.37:0,31,1075 0/0:156,0:155:99:0,123,3340 0/0:125,0:125:99:0,219,3078 0/0:100,0:100:99:0,133,2242 0/0:66,0:63:76.46:0,76,1429 0/0:112,0:110:99:0,171,2738 0/0:50,0:50:39.64:0,40,1062 0/0:44,0:44:36.37:0,36,770 0/0:43,0:43:73.33:0,73,952 0/0:63,0:63:32.91:0,33,1441 0/0:35,0:35:33.48:0,33,803 0/1:41,0:41:29.51:30,0,703 0/0:110,44:154:49.56:0,50,2926 0/0:39,0:39:0.92:6,0,741 0/0:51,0:51:50.43:0,50,1079 0/0:34,0:34:27.09:0,27,598 0/1:66,0:66:99:127,0,1290 0/0:78,0:78:51.83:0,52,1759 0/1:84,0:84:62.52:63,0,1645 0/0:49,0:49:32.64:0,33,967 0/0:150,0:149:99:0,115,3315 0/0:87,0:84:99:0,115,1968 0/0:95,0:92:99:0,106,2194 0/0:83,0:83:99:0,151,1870 0/0:46,0:46:24.46:0,24,821 0/1:54,0:54:28.24:28,0,992 0/0:43,0:43:33.39:0,33,809 0/1:48,0:48:25.30:25,0,902 0/0:44,0:44:1.67:3,0,857 0/0:83,0:82:99:0,121,1562 0/0:41,0:41:40.51:0,41,909 0/1:56,0:56:8.23:8,0,949 0/0:40,0:40:61.24:0,61,868 0/0:47,0:47:2.27:2,0,713 0/1:71,1:72:32.36:32,0,1229 0/0:46,0:46:21.20:0,21,1022 0/0:41,0:41:32.26:0,32,828 0/1:62,0:62:6.36:6,0,1054 0/0:38,0:38:29.47:0,29,869 0/0:42,0:42:17.31:0,17,590 12 133393290 . G C 499.21 . 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A G 634.45 . 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C T 3081.99 . 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A T 25509.76 . 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G A 10426.97 . 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C T 90.71 . AC=3;AF=0.036;AN=84;BaseQRankSum=-4.912;DP=1569;Dels=0.00;FS=62.789;HRun=0;HaplotypeScore=0.6365;InbreedingCoeff=-0.0387;MQ=59.27;MQ0=0;MQRankSum=-6.346;QD=1.18;ReadPosRankSum=-6.115 GT:AD:DP:GQ:PL 0/0:32,0:32:87.27:0,87,1080 0/0:25,0:25:66.20:0,66,827 0/0:25,0:25:69.21:0,69,846 0/0:90,0:90:99:0,238,3125 0/0:85,0:85:99:0,217,2937 0/0:75,0:75:99:0,211,2807 0/0:68,0:68:99:0,178,2414 0/0:57,0:57:99:0,156,2067 0/0:34,0:34:99:0,99,1227 0/0:28,0:28:72.23:0,72,915 0/0:21,0:21:63.17:0,63,744 0/0:30,0:30:81.25:0,81,1014 0/0:26,0:26:72.22:0,72,893 0/0:39,0:39:99:0,102,1270 0/0:76,0:76:99:0,199,2503 0/0:17,0:17:51.16:0,51,628 0/0:23,0:23:66.21:0,66,819 0/0:39,0:39:99:0,105,1309 0/0:26,0:26:66.20:0,66,823 0/0:26,0:26:69.21:0,69,869 0/0:35,2:37:37.36:0,37,1112 0/1:16,4:20:75.18:75,0,531 0/0:80,0:80:99:0,229,3053 0/0:58,0:58:99:0,150,2060 0/0:70,0:70:99:0,187,2516 0/0:65,0:65:99:0,181,2412 0/0:15,0:15:39.12:0,39,490 0/0:19,0:19:57.18:0,57,697 0/0:31,0:31:84.24:0,84,1030 0/0:20,0:20:57.18:0,57,726 0/0:17,0:17:51.16:0,51,625 0/1:23,3:26:34.58:35,0,653 0/0:12,0:12:30.09:0,30,382 0/0:18,0:18:54.15:0,54,645 0/0:37,3:40:8.22:0,8,1130 0/0:35,0:35:99:0,99,1235 0/0:29,0:29:75.24:0,75,944 0/0:23,0:23:66.21:0,66,818 0/1:27,4:31:56.38:56,0,835 0/0:31,0:31:87.24:0,87,1047 0/0:31,0:31:90.26:0,90,1087 0/0:19,0:19:54.17:0,54,670 13 21735998 . T C 15293.31 . AC=22;AF=0.262;AN=84;BaseQRankSum=28.238;DP=1801;Dels=0.00;FS=0.214;HRun=0;HaplotypeScore=0.5421;InbreedingCoeff=-0.1085;MQ=58.90;MQ0=0;MQRankSum=0.236;QD=16.92;ReadPosRankSum=2.123 GT:AD:DP:GQ:PL 0/0:34,0:34:84.26:0,84,1046 0/0:28,0:28:78.22:0,78,920 0/1:16,11:27:99:323,0,423 0/1:51,72:123:99:2337,0,1152 1/1:0,79:79:99:3015,220,0 0/1:40,47:87:99:1447,0,1102 0/0:77,0:77:99:0,214,2591 0/1:39,24:63:99:795,0,1051 0/1:15,17:32:99:465,0,425 0/1:13,15:28:99:433,0,351 0/0:37,0:37:99:0,102,1178 0/0:35,0:35:93.26:0,93,1113 0/0:31,0:31:84.23:0,84,984 0/0:35,0:35:93.26:0,93,1096 0/0:99,0:99:99:0,247,2984 0/0:18,0:18:48.14:0,48,572 0/0:31,0:31:87.24:0,87,1021 0/0:37,0:37:96.27:0,96,1157 0/1:15,17:32:99:491,0,424 0/1:23,9:32:99:224,0,657 0/1:27,16:43:99:427,0,755 0/0:25,1:26:31.40:0,31,745 0/0:101,0:101:99:0,262,3208 0/1:33,25:58:99:857,0,881 0/0:68,0:68:99:0,172,2117 0/1:34,32:66:99:941,0,906 0/0:22,0:22:54.17:0,54,686 0/0:27,0:27:69.20:0,69,832 0/0:28,0:28:78.23:0,78,927 0/1:10,10:20:99:331,0,268 1/1:0,19:20:51.17:667,51,0 0/1:24,12:36:99:323,0,713 0/1:7,8:15:99:216,0,200 0/1:11,19:30:99:536,0,271 0/1:23,16:39:99:418,0,687 0/0:39,1:40:72.72:0,73,1225 0/0:28,0:28:84.24:0,84,976 0/0:41,0:41:99:0,108,1308 0/0:33,0:33:96.29:0,96,1138 0/1:15,15:30:99:460,0,402 0/1:25,19:44:99:585,0,601 0/0:21,0:21:60.18:0,60,718 13 21750538 . G A 218.81 . AC=6;AF=0.071;AN=84;BaseQRankSum=1.693;DP=321;Dels=0.00;FS=14.911;HRun=0;HaplotypeScore=0.2910;InbreedingCoeff=-0.1043;MQ=56.72;MQ0=0;MQRankSum=-5.858;QD=3.71;ReadPosRankSum=-1.118 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,274 0/0:7,0:7:21.05:0,21,225 0/0:2,0:2:6.01:0,6,64 0/0:14,0:14:42.13:0,42,496 0/0:16,0:16:48.14:0,48,566 0/0:9,0:9:21.06:0,21,245 0/0:7,0:7:21.06:0,21,257 0/0:11,0:11:27.05:0,27,302 0/0:5,0:5:15.04:0,15,161 0/0:5,0:5:15.04:0,15,169 0/1:6,3:9:75.43:75,0,124 0/0:4,0:4:9.02:0,9,97 0/0:6,0:6:18.05:0,18,207 0/0:10,0:10:24.06:0,24,269 0/0:13,0:14:36.08:0,36,391 0/0:10,0:10:30.07:0,30,321 0/0:5,0:5:15.04:0,15,163 0/0:2,0:2:3.01:0,3,33 0/0:6,0:6:15.04:0,15,171 0/0:4,0:4:12.03:0,12,125 0/1:7,5:12:99:127,0,170 0/1:8,2:10:36.78:37,0,254 0/0:18,0:19:48.13:0,48,561 0/0:12,0:12:30.08:0,30,356 0/0:7,0:7:15.05:0,15,190 0/0:7,0:7:21.06:0,21,244 0/0:4,0:4:12.03:0,12,139 0/0:5,0:5:15.03:0,15,155 0/0:4,0:4:12.03:0,12,134 0/0:9,0:9:27.07:0,27,304 0/0:5,0:5:15.04:0,15,171 0/1:13,2:15:20.82:21,0,389 0/0:7,0:7:15.05:0,15,192 0/0:2,0:2:6.01:0,6,61 0/1:3,1:4:21.43:21,0,76 0/0:8,0:8:21.06:0,21,255 0/0:14,0:14:36.10:0,36,421 0/0:6,0:6:15.04:0,15,169 0/1:7,2:9:40.71:41,0,208 0/0:1,0:1:3.01:0,3,39 0/0:5,0:5:12.03:0,12,124 0/0:2,0:2:6.01:0,6,59 13 21955605 . T C 628.88 . AC=17;AF=0.202;AN=84;BaseQRankSum=-22.760;DP=1557;Dels=0.00;FS=1720.824;HRun=2;HaplotypeScore=1.1350;InbreedingCoeff=-0.2790;MQ=59.31;MQ0=0;MQRankSum=1.244;QD=1.01;ReadPosRankSum=-20.006 GT:AD:DP:GQ:PL 0/1:21,13:34:18.30:18,0,653 0/0:18,8:26:15.98:0,16,567 0/0:20,7:27:34.55:0,35,730 0/0:36,24:60:1.47:0,1,1078 0/1:35,23:58:99:103,0,973 0/0:44,16:60:99:0,122,1593 0/0:37,10:47:82.67:0,83,1380 0/0:37,16:53:29.52:0,30,1264 0/0:22,10:32:3.37:0,3,730 0/1:13,6:19:19.34:19,0,442 0/0:19,6:25:28.31:0,28,606 0/0:20,5:25:41.48:0,41,696 0/0:26,9:35:69.82:0,70,825 0/0:12,8:20:11.12:0,11,397 0/1:65,28:93:99:111,0,1892 0/1:18,11:29:0.53:1,0,536 0/1:15,9:24:62.38:62,0,476 0/0:15,12:27:20.23:0,20,448 0/1:41,18:59:66.60:67,0,1157 0/0:42,15:57:44.34:0,44,1239 0/1:43,19:62:50.55:51,0,1298 0/0:28,6:34:57.29:0,57,923 0/0:43,25:68:9.92:0,10,1444 0/1:26,15:41:39.80:40,0,848 0/0:28,19:47:1.01:0,1,879 0/0:24,9:33:11.26:0,11,832 0/1:12,6:18:44.55:45,0,376 0/0:14,8:22:8.44:0,8,431 0/1:10,8:18:53.62:54,0,337 0/1:21,9:30:21.73:22,0,647 0/1:19,9:28:45.10:45,0,601 0/0:46,14:60:91.76:0,92,1364 0/0:25,7:32:68.02:0,68,817 0/0:17,12:29:19.40:0,19,544 0/1:11,8:19:24.33:24,0,299 0/0:29,7:36:54.58:0,55,964 0/1:36,22:58:53.77:54,0,1135 0/0:24,8:32:34.90:0,35,723 0/0:19,7:26:6.85:0,7,625 0/1:9,6:15:23.18:23,0,306 0/0:16,4:20:10.36:0,10,525 0/1:13,6:19:46.16:46,0,407 13 21955635 . C T 4108.45 . AC=7;AF=0.083;AN=84;BaseQRankSum=3.407;DP=1648;Dels=0.00;FS=4.776;HRun=0;HaplotypeScore=0.4497;InbreedingCoeff=0.2208;MQ=59.44;MQ0=0;MQRankSum=0.262;QD=15.86;ReadPosRankSum=1.941 GT:AD:DP:GQ:PL 0/0:29,0:29:69.20:0,69,829 0/0:27,0:27:72.18:0,72,835 0/0:25,0:25:69.20:0,69,835 0/0:57,0:57:99:0,144,1839 0/0:51,0:51:99:0,129,1665 0/0:51,0:51:99:0,135,1737 0/0:51,0:51:99:0,138,1728 0/0:49,0:49:99:0,123,1551 0/0:26,0:26:72.20:0,72,845 0/0:23,0:23:63.18:0,63,743 0/0:36,0:36:90.24:0,90,1051 0/0:32,0:32:90.23:0,90,1027 0/0:43,0:43:99:0,105,1267 0/0:20,0:20:54.15:0,54,642 0/1:52,57:109:99:1435,0,1314 0/1:11,14:25:99:412,0,253 0/0:25,0:25:66.18:0,66,764 0/0:25,0:25:69.19:0,69,794 0/0:65,0:65:99:0,165,1991 0/0:59,1:60:99:0,106,1659 0/0:74,0:74:99:0,193,2291 0/0:39,0:39:99:0,99,1172 0/0:65,0:65:99:0,166,2147 0/1:23,20:43:99:540,0,666 0/0:44,0:44:99:0,114,1484 1/1:1,35:36:57.16:1114,57,0 0/0:21,0:21:54.16:0,54,652 0/1:10,14:24:99:386,0,264 0/0:24,0:24:69.17:0,69,777 0/0:34,0:34:99:0,99,1132 0/0:21,0:21:57.15:0,57,672 0/0:68,0:68:99:0,168,2085 0/0:35,0:35:90.26:0,90,1062 0/0:30,0:30:84.24:0,84,983 0/0:21,0:21:54.15:0,54,616 0/0:40,0:40:99:0,102,1214 0/0:59,0:59:99:0,156,1845 0/0:41,0:41:99:0,99,1204 0/0:27,0:27:72.20:0,72,846 0/0:19,0:19:57.16:0,57,661 0/0:32,0:32:87.25:0,87,1043 0/1:14,8:22:99:222,0,403 13 21955673 . T C 937.22 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.240;DP=1267;Dels=0.00;FS=8.381;HRun=0;HaplotypeScore=0.3857;InbreedingCoeff=-0.0244;MQ=59.40;MQ0=0;MQRankSum=0.402;QD=15.62;ReadPosRankSum=0.164 GT:AD:DP:GQ:PL 0/0:18,0:18:54.17:0,54,667 0/0:23,0:23:60.18:0,60,746 0/0:24,0:24:66.20:0,66,821 0/0:31,0:31:87.28:0,87,1108 0/1:17,13:30:99:453,0,547 0/0:38,0:38:99:0,108,1417 0/0:37,0:37:99:0,99,1302 0/0:36,0:36:99:0,108,1380 0/0:21,0:21:60.18:0,60,730 0/0:23,0:23:66.19:0,66,793 0/0:33,0:33:96.29:0,96,1163 0/0:34,0:34:90.28:0,90,1133 0/0:34,0:34:87.27:0,87,1097 0/0:18,0:18:48.13:0,48,590 0/0:82,0:82:99:0,220,2733 0/0:20,0:20:57.18:0,57,709 0/0:19,0:19:54.17:0,54,663 0/0:21,0:21:60.18:0,60,728 0/0:48,0:49:99:0,132,1639 0/0:39,0:39:99:0,108,1343 0/0:64,0:64:99:0,172,2164 0/1:12,18:30:99:547,0,343 0/0:41,0:41:99:0,117,1512 0/0:27,0:27:78.25:0,78,1006 0/0:31,0:31:84.26:0,84,1078 0/0:21,0:21:60.19:0,60,780 0/0:14,0:14:39.12:0,39,482 0/0:13,0:13:39.12:0,39,466 0/0:14,0:14:39.12:0,39,495 0/0:27,0:27:78.24:0,78,960 0/0:18,0:18:48.15:0,48,595 0/0:51,0:51:99:0,138,1735 0/0:29,0:29:81.25:0,81,1009 0/0:22,0:22:63.20:0,63,788 0/0:16,0:16:45.14:0,45,563 0/0:43,0:43:99:0,120,1465 0/0:46,0:46:99:0,129,1599 0/0:26,0:26:69.22:0,69,878 0/0:29,0:30:81.24:0,81,993 0/0:20,0:20:54.16:0,54,658 0/0:31,0:31:84.25:0,84,1043 0/0:23,0:23:63.18:0,63,781 13 22275394 . A G 91684.75 . AC=76;AF=0.905;AN=84;BaseQRankSum=-14.708;DP=3222;Dels=0.00;FS=2.300;HRun=0;HaplotypeScore=1.3607;InbreedingCoeff=-0.1053;MQ=59.37;MQ0=0;MQRankSum=-0.205;QD=28.46;ReadPosRankSum=0.477 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1734,156,0 1/1:0,61:61:99:1841,165,0 1/1:0,55:55:99:1778,159,0 1/1:0,107:107:99:3584,295,0 1/1:0,114:115:99:3829,310,0 1/1:0,103:103:99:3420,280,0 0/1:41,62:103:99:1721,0,1184 1/1:0,86:86:99:2824,229,0 1/1:0,83:83:99:2570,232,0 1/1:0,62:62:99:1963,180,0 1/1:0,57:57:99:1797,165,0 1/1:1,50:51:99:1496,108,0 0/1:21,32:54:99:847,0,574 0/1:36,29:65:99:751,0,1041 1/1:0,189:189:99:5831,526,0 1/1:0,65:65:99:1997,177,0 1/1:0,61:62:99:1884,174,0 1/1:0,54:54:99:1734,156,0 1/1:0,90:90:99:2747,250,0 1/1:0,84:84:99:2614,232,0 1/1:0,96:96:99:2844,256,0 1/1:1,68:69:99:1966,147,0 1/1:0,162:162:99:5248,430,0 1/1:0,78:78:99:2667,223,0 1/1:0,91:91:99:3084,250,0 1/1:1,84:85:99:2923,247,0 0/1:23,17:40:99:402,0,681 0/1:40,38:78:99:998,0,1125 1/1:0,60:60:99:1832,165,0 1/1:0,71:72:99:2153,193,0 0/1:24,30:54:99:766,0,690 1/1:0,99:99:99:2992,262,0 1/1:0,43:44:99:1327,123,0 1/1:0,53:53:99:1647,150,0 1/1:0,63:63:99:1938,177,0 1/1:0,66:66:99:2057,183,0 0/1:43,46:89:99:1154,0,1119 1/1:0,62:62:99:1828,165,0 0/1:31,44:75:99:1138,0,908 1/1:0,71:71:99:2170,196,0 1/1:0,57:57:99:1791,159,0 1/1:0,57:57:99:1797,162,0 13 23853553 . C A 156.65 . AC=3;AF=0.036;AN=84;BaseQRankSum=-13.827;DP=2332;Dels=0.00;FS=690.086;HRun=2;HaplotypeScore=1.0743;InbreedingCoeff=-0.0574;MQ=58.61;MQ0=0;MQRankSum=-1.219;QD=1.26;ReadPosRankSum=-10.174 GT:AD:DP:GQ:PL 0/0:50,21:71:93.86:0,94,1473 0/0:36,13:49:99:0,105,1293 0/0:27,10:37:39.50:0,39,722 0/0:52,30:82:84.38:0,84,1808 0/0:35,19:54:45.75:0,46,1282 0/0:24,29:53:35.57:0,36,796 0/0:33,25:58:75.24:0,75,1000 0/0:36,21:57:32.20:0,32,1094 0/0:34,16:50:93.25:0,93,1129 0/1:20,15:35:91.92:92,0,648 0/0:32,16:48:33.48:0,33,690 0/0:33,17:50:41:0,41,1051 0/0:24,8:32:31.62:0,32,713 0/1:27,15:42:29.98:30,0,853 0/0:120,63:183:17.36:0,17,3571 0/0:21,15:36:14.70:0,15,517 0/0:28,15:43:28.86:0,29,843 0/0:24,18:42:41.96:0,42,795 0/0:33,21:54:0.67:8,0,1019 0/0:50,26:76:83.06:0,83,1547 0/0:47,26:73:9.35:0,9,1548 0/0:28,11:39:42.58:0,43,807 0/0:50,36:87:86.50:0,87,1850 0/0:34,21:55:54.76:0,55,1044 0/0:36,24:60:77.65:0,78,1311 0/0:28,15:43:81.14:0,81,1012 0/0:24,14:38:11.06:0,11,711 0/0:25,14:39:3.51:0,4,737 0/0:45,23:68:25.06:0,25,1490 0/0:33,24:57:30.35:0,30,1031 0/0:25,13:38:42.50:0,43,749 0/0:62,20:82:99:0,122,1709 0/0:27,18:45:57.15:0,57,659 0/0:37,19:56:53:0,53,1195 0/0:34,12:46:50.31:0,50,1024 0/0:30,17:47:10.76:0,11,746 0/0:52,29:81:30.81:0,31,1341 0/0:27,16:43:48.52:0,49,821 0/0:26,17:43:10.45:0,10,816 0/1:26,21:47:99:108,0,726 0/0:29,15:44:53.65:0,54,956 0/0:32,17:49:90.26:0,90,1102 13 23898509 . T C 46965.83 . AC=57;AF=0.679;AN=84;BaseQRankSum=4.900;DP=2026;Dels=0.00;FS=1.460;HRun=0;HaplotypeScore=0.8163;InbreedingCoeff=-0.0370;MQ=59.05;MQ0=0;MQRankSum=-1.492;QD=25.51;ReadPosRankSum=0.124 GT:AD:DP:GQ:PL 1/1:0,34:34:87.27:1077,87,0 0/1:16,32:48:99:908,0,453 0/1:10,15:25:99:427,0,240 0/1:48,52:100:99:1505,0,1313 1/1:0,102:102:99:3618,271,0 1/1:0,87:88:99:3140,238,0 0/1:27,37:64:99:1125,0,714 0/1:15,40:55:99:1293,0,318 1/1:0,35:35:87.23:1081,87,0 1/1:0,26:26:75.23:926,75,0 1/1:0,36:36:99:1217,99,0 1/1:0,39:39:99:1220,99,0 1/1:0,27:27:81.25:1011,81,0 0/1:21,21:42:99:611,0,574 1/1:0,124:124:99:4016,325,0 0/1:18,19:37:99:567,0,512 1/1:0,42:42:99:1291,105,0 1/1:0,33:33:96.28:1134,96,0 1/1:0,72:72:99:2377,193,0 1/1:0,69:69:99:2288,187,0 0/1:26,20:46:99:593,0,722 0/0:40,1:41:80.74:0,81,1282 0/0:73,2:75:99:0,160,2473 0/1:26,21:47:99:661,0,725 0/0:44,2:46:92.95:0,93,1481 1/1:0,62:62:99:2172,163,0 0/1:17,11:28:99:315,0,504 0/1:17,21:38:99:585,0,463 0/1:18,19:37:99:562,0,513 0/1:23,26:49:99:708,0,653 0/0:23,0:23:69.21:0,69,833 1/1:0,55:55:99:1833,153,0 1/1:0,67:67:99:2121,171,0 0/1:9,21:30:99:662,0,213 1/1:1,36:37:71.30:1173,71,0 0/1:23,12:35:99:273,0,721 0/1:13,27:41:99:723,0,368 0/1:18,23:41:99:619,0,515 1/1:0,34:34:93.29:1166,93,0 0/1:19,13:32:99:322,0,612 1/1:0,37:37:99:1295,108,0 0/1:14,13:27:99:349,0,421 13 23898664 . A G 30557.61 . AC=75;AF=0.893;AN=84;BaseQRankSum=10.344;DP=1334;Dels=0.00;FS=6.545;HRun=0;HaplotypeScore=1.4439;InbreedingCoeff=-0.1200;MQ=58.53;MQ0=0;MQRankSum=-2.358;QD=22.91;ReadPosRankSum=-6.652 GT:AD:DP:GQ:PL 1/1:0,23:23:57.17:704,57,0 0/1:23,21:44:99:410,0,641 0/1:14,13:27:99:249,0,361 0/1:54,26:84:99:620,0,1523 1/1:0,56:57:99:1851,144,0 1/1:0,52:52:99:1641,129,0 1/1:0,37:37:87.28:1126,87,0 1/1:0,33:33:81.24:1022,81,0 1/1:0,24:24:54.17:688,54,0 1/1:0,17:18:39.12:495,39,0 1/1:0,21:22:54.16:668,54,0 1/1:0,20:21:57.17:695,57,0 1/1:0,30:30:72.19:868,72,0 1/1:0,26:26:57.18:697,57,0 1/1:0,73:74:99:1888,153,0 1/1:0,20:20:42.12:492,42,0 1/1:0,20:20:51.14:609,51,0 1/1:0,23:23:60.18:728,60,0 1/1:0,20:21:51.16:626,51,0 1/1:0,50:51:99:1604,129,0 1/1:1,20:21:57.17:702,57,0 0/1:16,12:28:99:296,0,414 0/1:57,21:81:99:384,0,1589 1/1:0,36:36:81.21:976,81,0 0/1:20,15:35:99:300,0,524 1/1:0,27:27:54.17:692,54,0 1/1:0,20:20:42.12:507,42,0 1/1:0,20:21:48.15:592,48,0 1/1:0,20:21:45.11:549,45,0 1/1:1,23:24:26.75:668,27,0 0/1:18,17:35:99:393,0,468 1/1:0,35:35:75.23:951,75,0 1/1:0,20:20:51.16:633,51,0 1/1:0,17:17:36.10:441,36,0 1/1:0,29:29:69.22:864,69,0 1/1:0,21:21:48.14:596,48,0 1/1:0,20:21:54.16:660,54,0 1/1:0,23:23:54.16:665,54,0 1/1:0,26:26:57.18:696,57,0 0/1:24,10:34:99:274,0,670 1/1:1,26:28:48.52:835,49,0 0/1:15,9:24:99:203,0,407 13 24167505 . T A 32788.46 . AC=21;AF=0.250;AN=84;BaseQRankSum=21.825;DP=4337;DS;Dels=0.00;FS=0.312;HRun=2;HaplotypeScore=1.4559;InbreedingCoeff=0.0476;MQ=59.49;MQ0=0;MQRankSum=1.087;QD=17.49;ReadPosRankSum=2.034 GT:AD:DP:GQ:PL 0/0:90,0:90:99:0,259,3045 0/1:49,52:101:99:1509,0,1182 0/1:59,27:86:99:767,0,1662 0/0:180,0:180:99:0,475,5744 0/1:61,68:129:99:2047,0,1678 0/0:161,1:162:99:0,385,5253 0/1:64,48:112:99:1316,0,1755 0/0:117,0:117:99:0,316,3859 0/0:94,0:94:99:0,244,2929 0/0:72,0:72:99:0,202,2387 0/0:70,0:70:99:0,196,2335 0/0:81,0:82:99:0,229,2727 0/0:93,0:93:99:0,256,3066 0/0:91,0:91:99:0,247,2979 1/1:0,249:250:99:8022,641,0 0/1:35,22:57:99:617,0,1021 1/1:0,81:81:99:2888,235,0 0/1:40,37:77:99:1030,0,1183 0/1:55,63:118:99:1763,0,1454 0/1:59,59:118:99:1700,0,1578 0/0:111,0:112:99:0,295,3548 0/0:84,0:84:99:0,229,2754 0/0:189,0:189:99:0,503,6140 0/1:48,50:98:99:1509,0,1390 0/0:132,0:132:99:0,364,4404 0/1:49,54:103:99:1590,0,1280 0/0:69,0:69:99:0,196,2333 0/0:101,0:101:99:0,283,3375 0/0:75,0:75:99:0,196,2355 0/1:42,40:82:99:1181,0,1147 1/1:0,71:71:99:2468,202,0 0/1:77,52:129:99:1321,0,2081 0/1:44,36:80:99:1036,0,1251 0/0:96,0:96:99:0,265,3183 0/0:79,0:79:99:0,226,2692 0/0:100,0:100:99:0,283,3416 0/1:67,36:103:99:947,0,1882 0/0:92,1:93:99:0,212,2879 0/1:44,36:80:99:1077,0,1250 0/0:85,0:85:99:0,232,2804 0/0:88,0:88:99:0,238,2874 0/0:106,0:107:99:0,286,3477 13 24436475 . C T 1191.18 . AC=11;AF=0.131;AN=84;BaseQRankSum=-0.196;DP=569;Dels=0.00;FS=1.891;HRun=1;HaplotypeScore=0.0936;InbreedingCoeff=0.0452;MQ=59.05;MQ0=0;MQRankSum=0.384;QD=11.68;ReadPosRankSum=-1.956 GT:AD:DP:GQ:PL 0/0:12,0:12:33.10:0,33,398 0/0:16,0:16:39.12:0,39,485 0/0:18,0:18:39.12:0,39,513 1/1:0,4:4:12.04:144,12,0 0/1:6,1:7:19.74:20,0,181 0/0:10,0:10:24.07:0,24,306 0/0:8,0:8:18.06:0,18,244 0/1:4,2:6:59.66:60,0,102 0/1:4,6:10:90.43:196,0,90 0/0:13,0:13:33.10:0,33,398 0/1:6,4:10:99:117,0,196 0/1:6,5:11:99:124,0,201 0/1:10,7:17:99:190,0,234 0/0:10,0:10:27.08:0,27,336 0/0:42,0:42:99:0,102,1238 0/0:14,0:14:36.11:0,36,442 0/0:22,0:22:51.16:0,51,664 0/0:6,0:6:18.05:0,18,209 0/0:20,0:20:42.13:0,42,561 0/0:13,0:13:33.09:0,33,400 0/0:15,0:15:33.09:0,33,409 0/0:11,0:11:27.08:0,27,347 0/1:6,4:10:93.80:94,0,177 0/0:6,0:6:15.05:0,15,207 0/0:10,0:10:27.09:0,27,356 0/0:6,0:6:18.05:0,18,217 0/0:9,0:9:24.07:0,24,293 0/0:16,0:16:39.12:0,39,506 0/0:15,0:15:36.11:0,36,465 0/0:16,0:16:39.11:0,39,482 0/0:12,0:12:30.09:0,30,370 0/0:13,0:13:33.10:0,33,416 0/0:7,0:7:21.06:0,21,247 0/0:18,0:18:48.15:0,48,606 0/0:20,0:20:51.15:0,51,634 0/0:21,0:21:45.13:0,45,576 0/1:4,6:10:99:168,0,109 0/1:9,8:17:99:221,0,233 0/0:13,0:13:39.12:0,39,467 0/0:13,0:13:36.11:0,36,442 0/0:23,0:23:57.18:0,57,725 0/0:19,0:19:42.12:0,42,542 13 24823894 . C T 3448.37 . AC=4;AF=0.048;AN=84;BaseQRankSum=6.113;DP=3212;DS;Dels=0.00;FS=18.171;HRun=0;HaplotypeScore=1.7146;InbreedingCoeff=-0.0500;MQ=59.27;MQ0=0;MQRankSum=-1.275;QD=13.01;ReadPosRankSum=-0.692 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,144,1617 0/0:52,0:53:99:0,147,1685 0/0:41,0:42:99:0,111,1330 0/0:186,1:187:99:0,507,6416 0/0:163,0:163:99:0,454,5479 0/0:107,0:107:99:0,304,3632 0/0:104,0:104:99:0,295,3530 0/0:126,2:128:99:0,281,4082 0/0:61,0:61:99:0,171,1953 0/0:45,0:45:99:0,126,1452 0/0:47,0:47:99:0,132,1549 0/0:44,0:44:99:0,123,1374 0/0:42,0:42:99:0,108,1245 0/0:63,0:63:99:0,174,2025 0/0:185,0:185:99:0,484,5622 0/0:46,0:46:99:0,132,1479 0/0:50,0:50:99:0,147,1672 0/1:28,19:47:99:529,0,748 0/1:57,40:98:99:1075,0,1560 0/0:93,0:94:99:0,259,2934 0/0:93,0:94:99:0,241,2784 0/0:77,0:77:99:0,220,2519 0/0:159,0:159:99:0,457,5521 0/0:87,1:88:99:0,210,2965 0/0:124,0:124:99:0,355,4175 0/0:79,0:79:99:0,220,2679 0/0:44,0:44:99:0,126,1403 0/0:54,0:54:99:0,153,1721 0/0:42,0:42:99:0,120,1392 0/0:55,1:56:99:0,153,1731 0/0:49,1:50:99:0,110,1554 0/0:126,0:126:99:0,325,3759 0/0:60,0:60:99:0,165,1915 0/1:31,30:61:99:874,0,850 0/0:44,0:44:99:0,129,1447 0/1:28,31:59:99:969,0,727 0/0:88,0:89:99:0,247,2773 0/0:49,0:49:99:0,138,1581 0/0:46,0:46:99:0,135,1524 0/0:46,0:46:99:0,129,1505 0/0:48,0:48:99:0,138,1611 0/0:62,0:62:99:0,177,1973 13 24823928 . T C 1310.46 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.459;DP=3019;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.7310;InbreedingCoeff=-0.0244;MQ=59.26;MQ0=0;MQRankSum=0.819;QD=12.25;ReadPosRankSum=-1.697 GT:AD:DP:GQ:PL 0/0:47,0:48:99:0,129,1468 0/0:47,0:48:99:0,117,1375 0/0:51,0:53:99:0,141,1574 0/0:165,0:167:99:0,457,5323 0/0:149,0:150:99:0,412,4778 0/0:89,0:90:99:0,234,2716 0/0:100,0:101:99:0,274,3235 0/0:103,0:103:99:0,271,3239 0/0:48,0:50:99:0,132,1480 0/0:42,0:42:99:0,105,1177 0/0:49,0:49:99:0,135,1479 0/0:46,0:46:99:0,129,1466 0/0:53,0:53:99:0,141,1566 0/0:57,0:58:99:0,162,1840 0/0:185,0:190:99:0,478,5505 0/0:40,0:40:99:0,117,1271 0/0:50,0:51:99:0,132,1455 0/0:44,0:45:99:0,123,1366 0/0:92,0:95:99:0,240,2696 0/0:75,0:76:99:0,204,2314 0/0:83,0:86:99:0,223,2576 0/0:66,1:67:99:0,183,2010 0/0:144,0:145:99:0,376,4433 0/0:75,0:76:99:0,196,2258 0/0:104,0:104:99:0,292,3371 0/0:69,0:69:99:0,192,2223 0/0:37,0:38:96.20:0,96,1081 0/0:62,1:64:99:0,168,1912 0/0:45,1:47:99:0,126,1407 0/0:47,1:50:99:0,138,1511 0/0:50,0:52:99:0,135,1482 0/0:101,0:103:99:0,268,3077 0/0:60,0:61:99:0,171,1917 0/1:28,35:64:99:913,0,753 0/1:24,18:43:99:460,0,569 0/0:53,0:54:99:0,132,1498 0/0:82,0:84:99:0,220,2556 0/0:48,0:48:99:0,129,1509 0/0:49,0:52:99:0,138,1482 0/0:56,0:57:99:0,144,1642 0/0:53,0:54:99:0,144,1633 0/0:45,0:45:99:0,132,1526 13 24868919 . T C 2312.86 . 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A G 127448.92 . 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T C 3515.61 . 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T G 1425.79 . 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A T 4858.74 . AC=7;AF=0.083;AN=84;BaseQRankSum=-15.826;DP=2289;Dels=0.00;FS=1.600;HRun=0;HaplotypeScore=0.6385;InbreedingCoeff=-0.0909;MQ=59.51;MQ0=0;MQRankSum=0.501;QD=12.79;ReadPosRankSum=-1.924 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,117,1451 0/1:19,20:39:99:595,0,563 0/1:25,30:55:99:826,0,775 0/0:86,0:86:99:0,244,3055 0/0:95,0:95:99:0,280,3549 0/0:89,0:89:99:0,253,3263 0/0:102,0:102:99:0,292,3772 0/0:75,0:75:99:0,208,2638 0/0:47,0:47:99:0,135,1638 0/0:27,0:27:75.23:0,75,919 0/0:39,0:39:99:0,114,1408 0/0:44,0:44:99:0,123,1521 0/0:42,0:42:99:0,114,1429 0/0:33,0:33:93.29:0,93,1161 0/1:74,54:128:99:1355,0,2228 0/0:28,0:29:75.23:0,75,942 0/1:21,19:40:99:511,0,640 0/0:47,0:47:99:0,138,1728 0/0:67,0:67:99:0,187,2348 0/0:49,0:49:99:0,144,1788 0/0:54,0:54:99:0,156,1933 0/0:31,0:31:87.26:0,87,1060 0/0:121,0:121:99:0,340,4334 0/0:86,0:86:99:0,247,3178 0/0:74,0:74:99:0,217,2778 0/0:79,0:79:99:0,226,2883 0/0:27,0:27:78.24:0,78,970 0/0:37,0:37:99:0,105,1292 0/0:37,0:37:99:0,99,1244 0/0:42,0:42:99:0,114,1438 0/1:14,12:26:99:349,0,441 0/0:45,0:45:99:0,120,1513 0/0:41,0:41:99:0,111,1389 0/0:39,0:39:99:0,114,1397 0/0:37,0:37:99:0,105,1305 0/0:55,0:55:99:0,156,1958 0/0:43,0:43:99:0,117,1481 0/0:45,0:45:99:0,123,1531 0/0:58,0:58:99:0,163,2012 0/1:26,24:50:99:708,0,784 0/0:46,0:46:99:0,135,1669 0/1:24,18:42:99:515,0,739 13 25072339 . A C 1066.41 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.323;DP=1881;Dels=0.00;FS=8.139;HRun=2;HaplotypeScore=1.7171;InbreedingCoeff=-0.0244;MQ=58.62;MQ0=2;MQRankSum=0.746;QD=13.01;ReadPosRankSum=0.246 GT:AD:DP:GQ:PL 0/0:34,0:34:96.27:0,96,1119 0/0:36,0:36:99:0,105,1235 0/0:33,0:33:84.25:0,84,1027 0/0:49,1:50:99:0,123,1476 0/0:53,0:54:99:0,135,1595 0/0:54,0:54:99:0,141,1732 0/0:24,0:24:69.20:0,69,820 0/0:51,0:52:99:0,135,1572 0/0:39,0:39:99:0,105,1221 0/0:28,0:28:75.21:0,75,868 0/0:27,0:27:69.20:0,69,818 0/0:36,0:36:99:0,99,1149 0/0:35,1:36:84.25:0,84,1024 0/0:28,0:28:78.21:0,78,906 0/0:125,0:126:99:0,313,3721 0/0:34,0:34:96.29:0,96,1131 0/0:33,0:33:93.28:0,93,1112 0/0:28,0:28:75.22:0,75,886 0/0:67,0:68:99:0,159,1903 0/0:73,1:74:99:0,190,2290 0/0:77,0:77:99:0,208,2489 0/0:42,0:42:99:0,111,1307 0/0:63,0:63:99:0,162,1954 0/0:27,0:27:69.21:0,69,842 0/0:33,0:33:84.24:0,84,1005 0/0:43,0:43:99:0,99,1199 0/0:21,0:21:54.16:0,54,660 0/0:44,1:45:99:0,123,1459 0/0:35,0:35:99:0,102,1187 0/0:68,0:68:99:0,168,2023 0/0:33,0:33:90.27:0,90,1089 0/0:69,0:69:99:0,174,2125 0/0:52,0:52:99:0,132,1571 0/1:21,20:41:99:582,0,550 0/1:21,20:41:99:546,0,569 0/0:38,0:38:99:0,102,1219 0/0:80,0:80:99:0,202,2418 0/0:32,0:32:90.25:0,90,1048 0/0:40,0:40:99:0,105,1257 0/0:46,0:46:99:0,117,1413 0/0:29,0:29:84.23:0,84,972 0/0:32,0:32:87.26:0,87,1033 13 25255705 . C A 2255.85 . 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T G 163.10 . 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C T 10214.91 . 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A G 11310.09 . 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G A 1056.37 . 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A C 8021.04 . 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C T 869.71 . 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G A 7548.90 . 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C CTT 18502.87 . AC=42;AF=0.500;AN=84;BaseQRankSum=21.350;DP=4022;FS=3200.000;HRun=2;HaplotypeScore=454.0320;InbreedingCoeff=-1.0000;MQ=57.51;MQ0=0;MQRankSum=-2.520;QD=4.60;ReadPosRankSum=-32.363 GT:AD:DP:GQ:PL 0/1:79,0:79:99:226,0,2041 0/1:64,0:64:99:260,0,1575 0/1:54,0:54:99:340,0,1118 0/1:143,36:179:99:1098,0,4685 0/1:147,23:170:99:611,0,4352 0/1:94,29:120:99:539,0,3036 0/1:101,19:117:99:243,0,3251 0/1:114,20:130:99:427,0,3728 0/1:66,0:66:99:333,0,1770 0/1:76,0:76:99:469,0,1988 0/1:59,0:59:99:200,0,1358 0/1:77,0:77:99:278,0,2035 0/1:59,0:59:99:308,0,1384 0/1:71,0:71:99:406,0,1754 0/1:216,0:216:99:927,0,5888 0/1:62,0:62:99:498,0,1311 0/1:60,0:60:99:384,0,1355 0/1:68,0:68:99:558,0,1582 0/1:88,11:99:99:187,0,2854 0/1:123,34:156:99:798,0,3451 0/1:104,14:118:99:291,0,3400 0/1:90,0:90:99:538,0,2128 0/1:171,44:215:99:996,0,5589 0/1:75,18:93:99:604,0,2109 0/1:128,34:158:99:485,0,4234 0/1:77,17:92:99:257,0,2219 0/1:63,0:62:99:255,0,1662 0/1:73,0:73:99:576,0,1843 0/1:71,0:71:99:177,0,1823 0/1:75,0:75:99:396,0,1934 0/1:72,0:72:99:486,0,1435 0/1:116,27:143:99:772,0,3744 0/1:101,0:101:99:571,0,2470 0/1:56,0:56:99:243,0,1369 0/1:92,0:92:99:417,0,2378 0/1:76,0:76:99:373,0,2015 0/1:89,5:94:81.88:82,0,2955 0/1:77,0:77:99:193,0,2099 0/1:74,0:73:99:502,0,1752 0/1:62,0:63:99:227,0,1645 0/1:63,0:62:99:779,0,990 0/1:63,0:63:99:195,0,1821 13 26153949 . TGCGGAC T 1945.24 . AC=21;AF=0.250;AN=84;BaseQRankSum=13.548;DP=3261;FS=3018.299;HRun=0;HaplotypeScore=424.8580;InbreedingCoeff=-0.3404;MQ=59.35;MQ0=0;MQRankSum=8.123;QD=1.37;ReadPosRankSum=-24.817 GT:AD:DP:GQ:PL 0/0:67,0:67:13.64:0,14,5938 0/0:48,0:48:51.72:0,52,4458 0/1:48,0:48:99:111,0,2985 0/0:132,0:132:99:0,161,13312 0/0:138,0:138:72.19:0,72,12964 0/0:83,0:79:99:0,169,8573 0/0:89,0:86:99:0,210,9197 0/0:104,0:100:99:0,205,10403 0/0:56,0:56:4.90:0,5,5070 0/1:66,0:66:94.13:94,0,5540 0/0:51,0:51:14.17:0,14,3859 0/0:64,0:64:8.15:0,8,5809 0/1:45,0:45:19.56:20,0,3906 0/1:61,0:61:17.58:18,0,4772 0/1:160,34:194:99:113,0,16778 0/1:49,0:49:78.04:78,0,3792 0/1:47,0:47:62.18:62,0,3817 0/1:65,0:65:99:175,0,4820 0/0:84,0:84:99:0,201,8838 0/0:101,0:100:99:0,214,9940 0/0:97,0:97:99:0,186,9981 0/1:76,0:76:99:140,0,6135 0/0:161,0:161:99:0,226,16330 0/0:69,0:69:59.66:0,60,6777 0/0:114,0:110:99:0,294,12454 0/0:67,0:65:99:0,143,6834 0/1:57,0:56:70.17:70,0,4500 0/1:63,0:63:99:181,0,5195 0/0:59,0:59:72.59:0,73,5294 0/1:69,0:69:99:217,0,5573 0/1:58,0:58:74.85:75,0,4536 0/0:112,0:112:99:0,119,10802 0/1:85,0:85:99:105,0,6847 0/1:50,0:50:73.09:73,0,3906 0/1:78,0:78:58.62:59,0,6703 0/1:65,0:65:9.81:10,0,5743 0/0:84,0:84:99:0,227,8713 0/0:64,0:64:99:0,141,6091 0/1:65,0:64:99:173,0,4954 0/1:52,9:61:64.52:65,0,5264 0/1:30,23:52:99:251,0,3049 0/1:62,0:62:40.37:40,0,5293 13 26153950 . G T 1666.13 . AC=19;AF=0.226;AN=84;BaseQRankSum=-18.370;DP=3261;Dels=0.02;FS=2119.265;HRun=2;HaplotypeScore=9.6903;InbreedingCoeff=-0.2884;MQ=59.35;MQ0=0;MQRankSum=1.627;QD=1.43;ReadPosRankSum=-20.138 GT:AD:DP:GQ:PL 0/0:56,11:67:18.29:0,18,1801 0/0:42,6:48:56.73:0,57,1384 0/1:30,18:48:99:135,0,943 0/0:122,10:132:99:0,361,4740 0/0:119,19:138:99:0,121,4320 0/0:81,2:83:99:0,238,3101 0/0:87,2:89:99:0,259,3290 0/0:101,3:104:99:0,289,3730 0/1:49,7:56:5.99:6,0,1584 0/1:55,11:66:65.07:65,0,1709 0/0:37,14:51:17.78:0,18,1204 0/0:54,10:64:29.71:0,30,1712 0/1:37,8:45:15.47:15,0,1206 0/1:46,15:61:60.43:60,0,1448 0/0:157,3:160:99:0,408,5612 0/1:35,14:49:86.11:86,0,1128 0/1:37,10:47:54.96:55,0,1145 0/1:48,17:65:99:206,0,1384 0/0:82,2:84:99:0,238,2883 0/0:96,5:101:99:0,274,3338 0/0:93,4:97:99:0,268,3302 0/1:58,18:76:99:103,0,1859 0/0:151,10:161:99:0,451,5905 0/0:63,6:69:99:0,190,2452 0/0:111,3:114:99:0,328,4351 0/0:65,2:67:99:0,187,2377 0/1:46,11:57:80.35:80,0,1434 0/1:48,15:63:99:175,0,1538 0/0:49,10:59:82.14:0,82,1667 0/1:52,17:69:99:181,0,1549 0/1:43,15:58:99:129,0,1380 0/0:104,8:112:99:0,304,3696 0/1:65,20:85:99:142,0,2048 0/1:38,12:50:79.98:80,0,1206 0/1:62,15:78:42.56:43,0,1923 0/1:56,9:65:27.84:28,0,1848 0/0:82,2:84:99:0,244,2950 0/0:56,8:64:99:0,130,1945 0/1:49,16:65:99:189,0,1471 0/0:50,2:52:99:0,147,1755 0/0:30,0:30:87.22:0,87,1051 0/1:51,11:62:56.38:56,0,1700 13 26153957 . C T 52.07 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.779;DP=3141;Dels=0.00;FS=169.041;HRun=1;HaplotypeScore=1.7237;InbreedingCoeff=-0.0120;MQ=58.76;MQ0=0;MQRankSum=7.325;QD=1.06;ReadPosRankSum=-7.326 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,163,2054 0/0:52,0:52:99:0,156,1958 0/0:37,0:37:99:0,105,1348 0/0:136,0:137:99:0,409,5465 0/0:133,0:133:99:0,388,5245 0/0:83,0:83:99:0,247,3319 0/0:90,0:90:99:0,265,3552 0/0:104,0:104:99:0,295,3994 0/0:52,0:52:99:0,150,1896 0/0:58,0:58:99:0,169,2140 0/0:45,0:45:99:0,135,1722 0/0:66,0:66:99:0,196,2488 0/0:49,0:49:99:0,144,1803 0/0:54,0:54:99:0,163,2055 0/0:174,21:195:99:0,333,6327 0/0:34,0:34:99:0,102,1305 0/0:47,0:47:99:0,135,1713 0/0:59,0:59:99:0,166,2084 0/0:82,0:82:99:0,244,3076 0/0:103,0:103:99:0,292,3708 0/0:102,0:102:99:0,298,3760 0/0:70,0:70:99:0,205,2591 0/0:162,0:162:99:0,479,6459 0/0:69,0:69:99:0,202,2701 0/0:120,0:120:99:0,358,4864 0/0:75,0:75:99:0,214,2873 0/0:44,0:44:99:0,129,1605 0/0:60,0:60:99:0,175,2214 0/0:54,0:54:99:0,153,1935 0/0:61,0:61:99:0,184,2295 0/0:52,0:52:99:0,150,1915 0/0:103,0:103:99:0,307,3913 0/0:74,0:74:99:0,223,2829 0/0:44,0:44:99:0,129,1635 0/0:72,0:72:99:0,211,2629 0/0:63,0:63:99:0,187,2393 0/0:91,0:92:99:0,268,3368 0/0:66,0:66:99:0,196,2496 0/0:51,0:51:99:0,150,1890 0/0:57,8:65:99:0,102,1948 0/1:34,15:49:98.28:98,0,1083 0/0:56,0:56:99:0,166,2109 13 26273377 . G A 644.13 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.608;DP=2931;Dels=0.00;FS=5.103;HRun=0;HaplotypeScore=1.4406;InbreedingCoeff=-0.0120;MQ=59.35;MQ0=0;MQRankSum=0.169;QD=12.15;ReadPosRankSum=-1.269 GT:AD:DP:GQ:PL 0/0:74,0:74:99:0,214,2407 0/0:56,1:57:99:0,128,1853 0/0:43,0:43:99:0,120,1412 0/0:137,0:137:99:0,361,4602 0/0:77,0:77:99:0,217,2799 0/0:101,0:101:99:0,280,3561 0/0:76,0:76:99:0,205,2643 0/0:86,0:86:99:0,235,3008 0/0:64,0:64:99:0,171,2032 0/0:53,0:54:99:0,138,1636 0/0:54,0:54:99:0,156,1846 0/0:70,1:71:99:0,196,2301 0/0:59,0:59:99:0,159,1828 0/0:47,0:47:99:0,123,1481 0/0:181,0:181:99:0,448,5430 0/0:53,0:53:99:0,147,1701 0/0:56,0:56:99:0,153,1844 0/0:57,0:57:99:0,162,1904 0/0:55,0:56:99:0,153,1791 0/0:71,0:71:99:0,196,2319 0/0:74,0:75:99:0,184,2140 0/0:40,0:40:99:0,111,1280 0/0:148,0:148:99:0,397,5140 0/0:99,0:100:99:0,268,3436 0/0:82,1:83:99:0,189,2836 0/0:84,0:84:99:0,229,2906 0/0:50,0:50:99:0,126,1502 0/0:55,0:55:99:0,156,1824 0/0:47,0:47:99:0,120,1456 0/0:81,0:81:99:0,229,2703 0/0:54,0:54:99:0,156,1820 0/0:79,0:80:99:0,199,2338 0/0:31,0:31:84.25:0,84,1008 0/0:55,0:55:99:0,162,1936 0/1:27,26:53:99:690,0,756 0/0:55,0:56:99:0,153,1815 0/0:85,0:85:99:0,220,2583 0/0:57,0:57:99:0,153,1820 0/0:59,0:59:99:0,165,1911 0/0:54,0:54:99:0,144,1683 0/0:54,0:54:99:0,153,1807 0/0:56,0:56:99:0,159,1859 13 26273385 . G C 102629.58 . AC=84;AF=1.000;AN=84;BaseQRankSum=1.576;DP=2825;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.1511;InbreedingCoeff=-0.0000;MQ=59.36;MQ0=0;MQRankSum=0.286;QD=36.33;ReadPosRankSum=0.897 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2697,214,0 1/1:0,51:51:99:1915,150,0 1/1:0,48:48:99:1719,138,0 1/1:0,134:134:99:4955,364,0 1/1:0,80:80:99:2990,220,0 1/1:0,91:91:99:3621,268,0 1/1:0,72:72:99:2739,205,0 1/1:0,79:79:99:3057,226,0 1/1:0,65:65:99:2310,181,0 1/1:0,51:52:99:1809,141,0 1/1:0,48:48:99:1795,141,0 1/1:0,65:65:99:2393,190,0 1/1:0,56:57:99:1998,156,0 1/1:0,46:46:99:1584,123,0 1/1:1,174:175:99:5938,460,0 1/1:0,49:49:99:1830,144,0 1/1:0,53:53:99:1895,147,0 1/1:0,59:59:99:2174,172,0 1/1:0,54:54:99:1876,147,0 1/1:0,68:68:99:2483,196,0 1/1:0,74:74:99:2512,199,0 1/1:0,40:40:99:1418,111,0 1/1:0,141:141:99:5402,394,0 1/1:0,87:87:99:3139,232,0 1/1:0,76:76:99:2963,217,0 1/1:0,79:79:99:3036,226,0 1/1:0,46:46:99:1594,123,0 1/1:0,57:57:99:2113,169,0 1/1:0,43:44:99:1540,120,0 1/1:1,73:74:99:2592,178,0 1/1:0,54:54:99:1914,150,0 1/1:0,75:75:99:2531,196,0 1/1:0,33:33:96.28:1182,96,0 1/1:0,56:56:99:2082,163,0 1/1:0,51:51:99:1812,141,0 1/1:0,52:52:99:1899,150,0 1/1:0,82:82:99:2877,226,0 1/1:0,66:66:99:2284,181,0 1/1:0,60:60:99:2199,175,0 1/1:0,51:51:99:1818,144,0 1/1:0,50:50:99:1804,144,0 1/1:0,57:57:99:2140,169,0 13 26273403 . C A 3459.09 . AC=5;AF=0.060;AN=84;BaseQRankSum=-10.208;DP=2630;Dels=0.00;FS=0.738;HRun=0;HaplotypeScore=1.1188;InbreedingCoeff=-0.0633;MQ=59.36;MQ0=0;MQRankSum=-1.576;QD=12.27;ReadPosRankSum=0.264 GT:AD:DP:GQ:PL 0/0:74,0:74:99:0,196,2446 0/0:51,0:51:99:0,147,1840 0/0:44,0:44:99:0,126,1586 0/0:112,0:112:99:0,316,4093 0/0:77,1:78:99:0,196,2799 0/0:86,0:87:99:0,238,3088 0/0:65,0:65:99:0,190,2364 0/0:81,0:81:99:0,226,2893 0/0:58,1:59:99:0,153,1976 0/0:47,0:47:99:0,135,1679 0/0:48,0:48:99:0,141,1766 0/0:60,0:60:99:0,162,2011 0/0:51,0:51:99:0,141,1740 0/0:48,0:48:99:0,135,1682 0/0:152,0:153:99:0,400,4899 0/0:37,0:37:99:0,102,1264 0/0:51,1:52:99:0,114,1819 0/1:36,20:56:99:505,0,1034 0/0:54,0:55:99:0,153,1841 0/0:66,0:66:99:0,190,2385 0/0:70,0:70:99:0,193,2290 0/0:40,0:40:99:0,108,1365 0/0:125,1:126:99:0,319,4546 0/0:67,0:67:99:0,187,2349 0/0:76,0:76:99:0,217,2846 0/0:68,1:69:99:0,156,2458 0/0:44,0:45:99:0,129,1604 0/0:51,0:51:99:0,141,1729 0/0:50,0:50:99:0,141,1735 0/0:63,0:63:99:0,175,2158 0/0:50,0:50:99:0,150,1850 0/0:70,0:70:99:0,187,2370 0/0:37,0:37:93.28:0,93,1152 0/1:24,25:49:99:689,0,710 0/0:43,1:44:99:0,123,1558 0/1:28,16:44:99:419,0,847 0/1:38,37:75:99:1062,0,1082 0/1:30,28:58:99:785,0,908 0/0:62,0:62:99:0,175,2196 0/0:47,0:47:99:0,123,1540 0/0:55,0:55:99:0,147,1886 0/0:57,0:57:99:0,162,1999 13 26349076 . C T 2286.83 . 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T C 24.25 . 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C T 610.14 . 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G A 77655.72 . AC=73;AF=0.869;AN=84;BaseQRankSum=-20.323;DP=2847;Dels=0.00;FS=8.532;HRun=0;HaplotypeScore=1.4293;InbreedingCoeff=0.4770;MQ=59.13;MQ0=0;MQRankSum=-0.891;QD=29.74;ReadPosRankSum=-3.774 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1257,102,0 1/1:0,42:42:99:1302,108,0 0/1:21,17:38:99:410,0,664 1/1:0,138:138:99:4458,361,0 1/1:0,126:126:99:4291,346,0 0/1:68,57:125:99:1602,0,1820 1/1:0,73:73:99:2370,190,0 0/0:105,0:105:99:0,271,3657 1/1:2,36:38:57.54:1162,58,0 1/1:1,37:38:69:1220,69,0 1/1:0,34:34:93.26:1118,93,0 1/1:0,34:34:96.29:1159,96,0 1/1:0,40:40:99:1413,117,0 1/1:0,61:61:99:2021,166,0 1/1:1,166:168:99:4964,373,0 1/1:0,63:63:99:2031,165,0 1/1:0,33:33:93.28:1117,93,0 1/1:0,38:38:99:1345,111,0 1/1:1,101:103:99:3264,268,0 1/1:0,103:103:99:3174,259,0 1/1:0,119:119:99:3792,307,0 1/1:0,64:64:99:2036,166,0 1/1:0,145:145:99:4793,385,0 0/0:101,0:101:99:0,256,3437 0/1:40,49:89:99:1433,0,1092 0/1:42,37:79:99:964,0,1341 1/1:0,28:28:72.22:876,72,0 1/1:0,46:46:99:1484,123,0 1/1:0,31:31:90.26:1071,90,0 0/1:17,25:42:99:644,0,523 0/0:30,0:30:78.23:0,78,963 1/1:0,107:108:99:3327,265,0 1/1:0,49:49:99:1686,141,0 1/1:0,31:31:90.26:1080,90,0 1/1:0,43:43:99:1425,114,0 1/1:0,46:46:99:1582,132,0 1/1:0,141:141:99:4435,358,0 1/1:0,54:54:99:1766,144,0 1/1:0,49:49:99:1711,141,0 1/1:0,37:38:99:1261,105,0 1/1:0,34:34:96.29:1163,96,0 1/1:0,42:42:99:1448,120,0 13 28539005 . A C 594.77 . AC=14;AF=0.167;AN=84;BaseQRankSum=-16.949;DP=1206;Dels=0.00;FS=444.871;HRun=4;HaplotypeScore=1.1383;InbreedingCoeff=-0.2166;MQ=58.02;MQ0=0;MQRankSum=3.176;QD=1.66;ReadPosRankSum=-10.765 GT:AD:DP:GQ:PL 0/0:10,3:13:30.09:0,30,359 0/1:11,7:18:61.15:61,0,303 0/1:9,6:15:80.15:80,0,258 0/0:38,29:67:16.98:0,17,985 0/1:36,28:64:99:161,0,817 0/1:21,17:38:94.47:94,0,567 0/0:29,17:47:40.83:0,41,855 0/0:32,18:51:42.79:0,43,973 0/1:7,6:13:28.21:28,0,192 0/0:15,2:17:36.10:0,36,425 0/0:15,3:18:38.33:0,38,443 0/1:11,11:22:64.76:65,0,308 0/0:16,4:20:48.10:0,48,545 0/0:13,3:16:39.11:0,39,458 0/0:46,14:60:67.81:0,68,1306 0/0:20,4:25:30.44:0,30,565 0/0:13,4:17:10.57:0,11,432 0/1:11,6:17:8.28:8,0,317 0/0:14,6:20:9.42:0,9,367 0/0:28,8:36:39.66:0,40,853 0/1:17,10:27:86.16:86,0,533 0/0:21,8:30:54.14:0,54,619 0/0:50,36:88:2.67:0,3,1433 0/0:29,8:37:28.77:0,29,726 0/0:31,14:48:18.59:0,19,853 0/0:21,20:42:63.17:0,63,740 0/0:8,6:14:21.06:0,21,244 0/0:11,10:21:6.48:0,6,358 0/0:14,6:20:11.99:0,12,410 0/0:19,5:24:27.67:0,28,628 0/1:14,7:21:12.56:13,0,391 0/1:27,10:37:60.19:60,0,721 0/0:22,5:27:61.97:0,62,705 0/0:13,5:19:9.48:0,9,356 0/1:14,11:25:12.52:13,0,380 0/1:10,5:15:29.54:30,0,305 0/1:17,7:24:34.96:35,0,485 0/0:15,4:20:44.87:0,45,507 0/0:14,2:16:36.09:0,36,421 0/0:17,1:18:48.14:0,48,562 0/1:15,7:22:8.12:8,0,463 0/0:14,3:17:1.75:0,2,361 13 28626716 . C T 2550.56 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.534;DP=4022;DS;Dels=0.00;FS=4.040;HRun=0;HaplotypeScore=1.9916;InbreedingCoeff=-0.0244;MQ=59.37;MQ0=0;MQRankSum=-0.288;QD=15.09;ReadPosRankSum=-1.216 GT:AD:DP:GQ:PL 0/0:70,0:70:99:0,187,2184 0/0:61,0:61:99:0,159,1872 0/0:70,0:70:99:0,186,2112 0/0:158,1:159:99:0,406,5079 0/0:162,1:163:99:0,415,5513 0/0:141,0:141:99:0,370,4676 0/0:110,1:113:99:0,262,3592 0/0:140,0:140:99:0,340,4311 0/0:71,0:71:99:0,177,2077 0/0:55,0:55:99:0,156,1740 0/0:75,0:75:99:0,205,2377 0/0:91,0:91:99:0,235,2736 0/0:63,0:63:99:0,180,2066 0/0:65,0:65:99:0,186,2101 0/0:230,0:230:99:0,611,7101 0/0:63,0:63:99:0,174,1986 0/0:91,0:91:99:0,256,2888 0/1:33,33:66:99:875,0,897 0/1:44,59:103:99:1738,0,1112 0/0:120,0:121:99:0,304,3571 0/0:107,0:108:99:0,286,3275 0/0:79,0:79:99:0,217,2453 0/0:174,0:174:99:0,466,5901 0/0:125,0:125:99:0,331,4136 0/0:125,0:125:99:0,343,4300 0/0:116,0:116:99:0,304,3802 0/0:62,0:62:99:0,168,1973 0/0:68,0:68:99:0,192,2173 0/0:65,0:65:99:0,177,2030 0/0:89,0:89:99:0,232,2739 0/0:69,0:69:99:0,186,2156 0/0:119,0:120:99:0,307,3631 0/0:93,0:93:99:0,244,2848 0/0:93,0:93:99:0,259,2970 0/0:75,0:75:99:0,196,2243 0/0:71,0:71:99:0,199,2278 0/0:117,0:117:99:0,310,3541 0/0:89,0:89:99:0,241,2792 0/0:73,0:73:99:0,208,2373 0/0:70,0:70:99:0,196,2248 0/0:73,0:73:99:0,205,2369 0/0:57,0:57:99:0,159,1835 13 28750677 . C A 58.78 . AC=3;AF=0.036;AN=84;BaseQRankSum=-26.849;DP=5792;DS;Dels=0.00;FS=1710.425;HRun=2;HaplotypeScore=2.8125;InbreedingCoeff=-0.0391;MQ=59.49;MQ0=1;MQRankSum=-0.179;QD=0.15;ReadPosRankSum=-20.145 GT:AD:DP:GQ:PL 0/0:64,27:92:41.02:0,41,1667 0/0:62,33:95:99:0,127,1839 0/0:72,35:107:70.56:0,71,2005 0/0:149,100:249:99:0,362,4911 0/0:160,90:250:99:0,313,5229 0/0:156,80:236:99:0,309,4951 0/0:158,86:246:99:0,152,4681 0/0:154,77:231:99:0,287,5032 0/0:75,42:117:75:0,75,2136 0/0:66,31:97:99:0,165,1932 0/0:67,31:98:80.81:0,81,2102 0/0:59,35:94:34.54:0,35,1651 0/0:75,38:113:99:0,120,2267 0/0:54,25:79:91.89:0,92,1660 0/0:135,115:250:99:0,152,3626 0/0:53,18:72:87.48:0,87,1544 0/0:73,33:106:99:0,196,2385 0/0:70,39:109:99:0,131,1971 0/0:85,11:96:99:0,179,2456 0/0:138,62:200:99:0,254,4054 0/1:82,61:143:67.43:67,0,2503 0/0:84,34:118:99:0,121,2271 0/0:147,103:250:99:0,283,4724 0/0:126,65:191:99:0,252,3918 0/0:140,85:225:99:0,214,4435 0/0:157,68:225:99:0,299,4667 0/0:55,28:83:52.65:0,53,1419 0/0:68,34:103:99:0,108,2013 0/0:57,34:91:8.63:0,9,1503 0/0:67,26:93:54.72:0,55,1726 0/0:50,33:83:12.57:0,13,1403 0/0:153,47:200:99:0,315,4350 0/0:87,38:125:99:0,144,2334 0/0:72,33:105:72.24:0,72,2121 0/0:54,24:78:99:0,113,1696 0/0:76,51:127:75.72:0,76,2215 0/1:111,60:171:45.91:46,0,3332 0/0:70,27:97:99:0,107,2138 0/0:55,28:84:99:0,109,1622 0/0:67,32:99:99:0,136,2159 0/1:64,27:91:20.09:20,0,1763 0/0:66,6:72:99:0,171,2048 13 28750677 . C CA 333.20 . AC=4;AF=0.048;AN=84;BaseQRankSum=7.107;DP=6066;DS;FS=1965.513;HRun=2;HaplotypeScore=545.4338;InbreedingCoeff=-0.0614;MQ=59.35;MQ0=1;MQRankSum=-1.074;QD=0.46;ReadPosRankSum=-26.718 GT:AD:DP:GQ:PL 0/0:96,0:96:32.46:0,32,1738 0/0:99,0:99:99:0,103,1813 0/0:111,0:111:99:0,115,2091 0/0:250,0:250:99:0,267,4307 0/0:250,0:248:99:0,314,4701 0/0:245,1:240:99:0,270,4687 0/0:250,0:243:99:0,208,4497 0/0:243,0:238:99:0,282,4628 0/0:119,0:119:99:0,114,2274 0/0:100,0:100:99:0,120,1920 0/0:108,0:108:4.48:0,4,2122 0/0:95,0:95:23.57:0,24,1564 0/0:114,0:114:60.28:0,60,2317 0/0:83,0:83:79.42:0,79,1687 0/1:250,0:250:66.16:66,0,2483 0/0:81,0:81:96.20:0,96,1699 0/0:109,0:109:99:0,183,2238 0/0:111,0:111:81.96:0,82,2045 0/1:97,35:132:99:138,0,2058 0/0:206,0:206:99:0,174,4105 0/1:163,0:163:99:99,0,2393 0/0:118,0:117:99:0,102,2365 0/0:250,0:249:99:0,210,3949 0/0:203,0:195:99:0,263,3775 0/0:238,0:236:99:0,298,4372 0/0:244,0:238:99:0,255,4506 0/0:86,0:86:21.68:0,22,1432 0/0:112,0:112:99:0,111,2101 0/0:93,0:93:25.11:0,25,1623 0/0:102,0:102:99:0,122,2051 0/0:83,0:83:2.92:0,0,1358 0/0:202,0:202:99:0,314,4648 0/0:132,0:132:99:0,158,2455 0/0:110,0:110:99:0,103,2119 0/0:82,0:82:76.72:0,77,1633 0/0:128,0:128:60.81:0,61,2080 0/1:186,0:186:99:124,0,3296 0/0:102,0:102:99:0,150,2209 0/0:87,0:87:57.50:0,57,1583 0/0:103,0:103:99:0,135,2074 0/0:94,0:94:11.37:0,11,1755 0/0:70,25:95:90.85:0,91,1919 13 28883061 . G A 57014.92 . AC=73;AF=0.869;AN=84;BaseQRankSum=-12.811;DP=2165;Dels=0.00;FS=16.189;HRun=0;HaplotypeScore=0.6093;InbreedingCoeff=0.0585;MQ=59.29;MQ0=1;MQRankSum=0.885;QD=27.54;ReadPosRankSum=-0.318 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1206,102,0 1/1:0,39:39:99:1266,102,0 1/1:0,33:33:93.27:1108,93,0 1/1:0,119:119:99:3750,304,0 1/1:0,78:78:99:2632,214,0 0/1:59,49:108:99:1436,0,1753 0/0:94,1:95:99:0,208,3168 0/1:56,39:95:99:1050,0,1770 1/1:0,34:34:96.28:1124,96,0 1/1:0,31:31:90.26:1049,90,0 1/1:0,25:25:72.22:864,72,0 0/1:20,22:42:99:630,0,568 1/1:0,42:42:99:1365,114,0 0/1:32,20:52:99:570,0,902 0/1:52,58:112:99:1521,0,1433 0/1:14,9:23:99:260,0,405 1/1:0,39:39:99:1375,114,0 1/1:0,39:39:99:1356,114,0 1/1:0,43:43:99:1374,111,0 1/1:0,54:54:99:1818,150,0 1/1:0,34:34:84.26:1057,84,0 1/1:0,20:20:57.18:694,57,0 1/1:0,106:106:99:3654,298,0 1/1:0,78:78:99:2730,220,0 0/1:54,47:101:99:1349,0,1690 1/1:0,88:88:99:3032,244,0 1/1:0,29:29:84.26:1013,84,0 1/1:0,49:49:99:1702,141,0 1/1:0,38:38:99:1293,108,0 1/1:0,35:35:99:1198,99,0 1/1:0,32:32:93.28:1102,93,0 1/1:0,38:38:99:1260,102,0 1/1:0,33:33:90.25:1066,90,0 1/1:0,27:27:72.22:892,72,0 1/1:0,37:37:99:1267,105,0 1/1:0,37:37:99:1283,105,0 1/1:0,38:38:99:1204,99,0 0/1:21,19:40:99:517,0,609 1/1:0,37:37:99:1316,111,0 1/1:0,48:48:99:1659,135,0 1/1:0,45:45:99:1435,117,0 0/1:19,18:37:99:539,0,546 13 29007966 . T G 2095.50 . AC=2;AF=0.024;AN=84;BaseQRankSum=9.652;DP=4619;DS;Dels=0.00;FS=2.723;HRun=3;HaplotypeScore=1.3375;InbreedingCoeff=-0.0244;MQ=59.52;MQ0=0;MQRankSum=-0.338;QD=12.33;ReadPosRankSum=-2.503 GT:AD:DP:GQ:PL 0/0:88,0:88:99:0,238,2827 0/0:85,0:85:99:0,211,2581 0/0:87,0:87:99:0,235,2763 0/0:231,0:231:99:0,584,7152 0/0:205,0:205:99:0,548,6625 0/0:183,0:184:99:0,503,6184 0/0:144,0:144:99:0,385,4687 0/0:175,1:176:99:0,469,5660 0/0:78,0:78:99:0,208,2478 0/0:69,0:69:99:0,190,2254 0/0:87,0:87:99:0,238,2794 0/0:79,0:80:99:0,208,2483 0/0:79,1:80:99:0,208,2492 0/0:73,0:73:99:0,187,2272 0/0:250,0:250:99:0,638,7707 0/0:65,0:65:99:0,181,2120 0/0:85,0:85:99:0,232,2722 0/0:74,0:74:99:0,205,2419 0/0:99,1:101:99:0,268,3226 0/0:112,1:113:99:0,270,3570 0/0:140,1:142:99:0,376,4576 0/0:68,0:68:99:0,181,2143 0/0:244,0:244:99:0,638,7760 0/0:144,0:144:99:0,388,4700 0/0:180,1:181:99:0,472,5788 0/0:149,0:149:99:0,400,4843 0/0:71,0:71:99:0,196,2308 0/0:75,0:75:99:0,214,2526 0/0:66,0:66:99:0,181,2146 0/0:102,0:102:99:0,268,3212 0/0:61,0:61:99:0,178,2089 0/0:122,0:123:99:0,316,3877 0/0:74,0:74:99:0,202,2391 0/1:43,40:83:99:1087,0,1219 0/1:51,36:87:99:1071,0,1291 0/0:93,0:93:99:0,262,3095 0/0:99,1:100:99:0,277,3258 0/0:95,0:95:99:0,268,3144 0/0:78,1:79:99:0,220,2606 0/0:95,1:96:99:0,262,3104 0/0:74,0:74:99:0,214,2487 0/0:56,0:56:99:0,159,1878 13 29041046 . T G 508.97 . 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G A 748.42 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.321;DP=4221;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.5849;InbreedingCoeff=-0.0120;MQ=59.31;MQ0=0;MQRankSum=-0.015;QD=15.59;ReadPosRankSum=-1.600 GT:AD:DP:GQ:PL 0/0:72,0:72:99:0,193,2260 0/0:71,0:71:99:0,193,2224 0/0:66,0:66:99:0,174,2034 0/0:248,0:250:99:0,626,7901 0/0:249,0:249:99:0,626,7974 0/0:174,0:174:99:0,427,5354 0/0:147,2:149:99:0,328,4647 0/0:175,1:176:99:0,436,5520 0/0:53,0:53:99:0,144,1679 0/0:52,0:52:99:0,135,1566 0/0:53,0:53:99:0,138,1553 0/0:49,0:49:99:0,141,1553 0/0:59,0:59:99:0,153,1746 0/0:50,0:50:99:0,129,1522 0/0:207,0:209:99:0,526,6176 0/0:72,1:73:99:0,168,2250 0/0:69,0:69:99:0,180,2081 0/0:39,0:39:99:0,111,1264 0/0:109,1:113:99:0,253,3184 0/0:130,0:130:99:0,346,3999 0/0:114,0:116:99:0,283,3226 0/0:86,0:86:99:0,220,2596 0/0:249,0:249:99:0,653,8244 0/0:131,0:131:99:0,331,4214 0/0:178,0:178:99:0,457,5840 0/0:159,0:160:99:0,400,5120 0/0:54,1:55:99:0,113,1653 0/0:66,0:66:99:0,171,1995 0/0:60,0:60:99:0,165,1899 0/0:68,0:68:99:0,180,2082 0/0:59,0:59:99:0,156,1852 0/0:141,0:144:99:0,346,4168 0/0:95,0:95:99:0,244,2875 0/0:48,0:48:99:0,132,1546 0/0:60,0:60:99:0,153,1765 0/0:53,0:53:99:0,141,1638 0/0:151,0:153:99:0,385,4486 0/1:20,28:48:99:795,0,463 0/0:65,0:65:99:0,183,2132 0/0:68,0:68:99:0,193,2227 0/0:49,2:51:69.10:0,69,1475 0/0:52,0:52:99:0,135,1509 13 30784566 . A G 3552.18 . AC=4;AF=0.048;AN=84;BaseQRankSum=-4.154;DP=4532;DS;Dels=0.00;FS=15.691;HRun=1;HaplotypeScore=1.6790;InbreedingCoeff=-0.0500;MQ=59.40;MQ0=0;MQRankSum=1.266;QD=10.57;ReadPosRankSum=-3.284 GT:AD:DP:GQ:PL 0/0:77,0:77:99:0,211,2651 0/0:78,0:78:99:0,202,2569 0/0:73,0:73:99:0,196,2486 0/0:164,0:164:99:0,418,5418 0/0:175,0:175:99:0,451,5921 0/0:145,0:145:99:0,382,5022 0/0:157,0:157:99:0,394,5205 0/0:163,0:163:99:0,409,5348 0/0:94,0:94:99:0,250,3130 0/0:74,0:74:99:0,208,2563 0/0:88,0:88:99:0,244,3057 0/0:87,0:87:99:0,238,3005 0/0:85,0:85:99:0,226,2858 0/0:81,0:81:99:0,214,2712 0/0:246,0:246:99:0,611,7767 0/0:55,0:55:99:0,153,1944 0/0:95,0:95:99:0,253,3215 0/0:93,0:93:99:0,256,3201 0/0:119,0:120:99:0,322,4061 0/0:111,0:111:99:0,301,3788 0/0:121,1:122:99:0,310,3933 0/0:64,0:64:99:0,172,2171 0/0:228,0:228:99:0,587,7698 0/0:167,0:167:99:0,427,5609 0/0:153,0:155:99:0,397,5213 0/0:133,0:133:99:0,340,4445 0/0:77,0:77:99:0,202,2568 0/0:97,0:97:99:0,262,3307 0/0:73,0:73:99:0,190,2419 0/0:82,0:82:99:0,223,2786 0/0:73,0:73:99:0,205,2580 0/0:118,1:120:99:0,298,3787 0/0:87,0:87:99:0,235,2954 0/1:47,20:69:99:515,0,1463 0/0:80,0:80:99:0,223,2812 0/1:47,44:93:99:1268,0,1274 0/0:97,0:97:99:0,262,3303 0/0:97,0:97:99:0,244,3117 0/0:80,0:81:99:0,214,2703 0/1:47,33:80:99:899,0,1435 0/0:101,0:101:99:0,265,3372 0/1:56,36:94:99:871,0,1671 13 31221106 . C T 3183.76 . AC=4;AF=0.048;AN=84;BaseQRankSum=-7.976;DP=2598;Dels=0.00;FS=1.555;HRun=0;HaplotypeScore=1.0144;InbreedingCoeff=-0.0500;MQ=59.53;MQ0=0;MQRankSum=-0.057;QD=12.94;ReadPosRankSum=-0.058 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,166,2144 0/0:61,0:61:99:0,166,2132 0/0:49,0:49:99:0,129,1679 0/0:76,0:76:99:0,199,2693 0/1:32,31:63:99:976,0,1019 0/0:78,0:78:99:0,205,2816 0/0:58,0:58:99:0,150,2030 0/0:66,0:66:99:0,169,2292 0/0:53,0:53:99:0,150,1893 0/1:23,15:38:99:417,0,659 0/0:52,0:52:99:0,144,1832 0/0:51,0:51:99:0,141,1805 0/0:57,0:57:99:0,144,1882 0/0:48,0:48:99:0,123,1617 0/0:204,0:204:99:0,527,6791 0/0:52,0:52:99:0,144,1839 0/0:60,0:60:99:0,166,2111 0/0:48,0:48:99:0,135,1725 0/1:45,34:79:99:944,0,1239 0/1:32,34:66:99:934,0,952 0/0:97,0:97:99:0,244,3158 0/0:57,0:57:99:0,156,2020 0/0:67,0:67:99:0,193,2621 0/0:73,0:73:99:0,190,2542 0/0:61,0:61:99:0,159,2145 0/0:55,0:55:99:0,150,2042 0/0:39,0:39:99:0,105,1353 0/0:48,0:48:99:0,138,1769 0/0:34,0:34:99:0,99,1260 0/0:56,0:56:99:0,153,1967 0/0:42,0:42:99:0,120,1527 0/0:64,0:64:99:0,175,2243 0/0:60,0:60:99:0,156,2027 0/0:62,0:62:99:0,178,2269 0/0:41,0:41:99:0,108,1403 0/0:56,0:56:99:0,153,1952 0/0:92,0:92:99:0,238,3091 0/0:57,0:57:99:0,156,1987 0/0:59,0:59:99:0,166,2089 0/0:55,0:55:99:0,153,1984 0/0:56,0:56:99:0,156,1990 0/0:43,0:44:99:0,117,1488 13 31318249 . C T 2197.39 . AC=2;AF=0.024;AN=84;BaseQRankSum=-10.028;DP=1924;Dels=0.00;FS=9.726;HRun=2;HaplotypeScore=0.7279;InbreedingCoeff=-0.0244;MQ=59.29;MQ0=0;MQRankSum=0.950;QD=14.27;ReadPosRankSum=1.934 GT:AD:DP:GQ:PL 0/0:38,0:38:90.28:0,90,1165 0/0:35,0:35:90.29:0,90,1174 0/0:29,0:29:75.24:0,75,983 0/0:120,0:120:99:0,301,4112 0/0:63,0:63:99:0,154,2096 0/0:66,0:66:99:0,162,2193 0/0:43,0:43:99:0,108,1479 0/0:82,0:82:99:0,202,2787 0/0:64,0:64:99:0,163,2120 0/0:37,0:37:99:0,99,1249 0/0:24,0:24:54.18:0,54,726 0/0:29,0:29:75.24:0,75,975 0/0:22,0:22:60.19:0,60,783 0/0:44,0:44:99:0,117,1501 0/1:55,65:121:99:1705,0,1624 0/0:36,0:36:99:0,99,1267 0/1:15,18:33:99:555,0,432 0/0:30,0:30:78.24:0,78,991 0/0:49,0:50:99:0,126,1640 0/0:49,0:49:99:0,126,1638 0/0:48,0:49:99:0,129,1672 0/0:20,0:20:54.17:0,54,701 0/0:117,0:117:99:0,271,3771 0/0:47,0:48:99:0,111,1504 0/0:63,0:63:99:0,163,2227 0/0:52,0:53:99:0,132,1821 0/0:32,0:32:90.28:0,90,1142 0/0:29,0:29:84.26:0,84,1061 0/0:42,0:42:99:0,111,1420 0/0:46,0:46:99:0,114,1500 0/0:26,0:26:78.25:0,78,997 0/0:49,0:50:99:0,123,1606 0/0:37,0:37:87.27:0,87,1134 0/0:36,0:36:99:0,99,1266 0/0:27,0:27:72.23:0,72,934 0/0:40,0:40:99:0,102,1316 0/0:28,0:28:66.21:0,66,845 0/0:38,0:38:99:0,105,1329 0/0:29,0:29:78.25:0,78,997 0/0:32,0:32:90.29:0,90,1145 0/0:36,0:36:99:0,102,1307 0/0:31,0:31:90.28:0,90,1134 13 31495179 . G A 2394.01 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.969;DP=2258;Dels=0.00;FS=4.217;HRun=1;HaplotypeScore=0.9466;InbreedingCoeff=-0.0244;MQ=59.29;MQ0=0;MQRankSum=-0.825;QD=12.21;ReadPosRankSum=2.468 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,153,1765 0/0:45,0:45:99:0,117,1402 0/0:45,0:45:99:0,123,1440 0/0:53,0:53:99:0,135,1734 0/0:48,0:48:99:0,117,1487 0/0:61,0:61:99:0,150,1890 0/0:42,0:42:99:0,108,1364 0/0:59,0:59:99:0,147,1887 0/0:50,0:50:99:0,135,1539 0/0:45,0:45:99:0,126,1436 0/0:51,0:51:99:0,138,1614 0/0:49,0:49:99:0,135,1553 0/0:39,0:39:99:0,105,1223 0/0:55,0:55:99:0,147,1717 0/1:82,74:156:99:1919,0,2070 0/1:22,18:40:99:537,0,618 0/0:39,0:39:99:0,105,1201 0/0:38,0:38:99:0,102,1186 0/0:81,0:81:99:0,205,2443 0/0:86,2:89:99:0,184,2612 0/0:99,0:99:99:0,247,2957 0/0:60,0:60:99:0,144,1749 0/0:52,0:52:99:0,141,1726 0/0:35,1:36:60.16:0,60,1115 0/0:53,0:53:99:0,138,1741 0/0:37,0:37:93.29:0,93,1183 0/0:40,0:40:99:0,111,1301 0/0:46,0:46:99:0,120,1366 0/0:44,0:44:99:0,117,1389 0/0:37,0:37:96.23:0,96,1105 0/0:33,0:33:96.26:0,96,1094 0/0:64,0:64:99:0,171,2010 0/0:51,0:51:99:0,147,1652 0/0:42,0:42:99:0,114,1320 0/0:54,0:54:99:0,150,1722 0/0:47,0:47:99:0,129,1511 0/0:70,0:70:99:0,171,2088 0/0:48,0:48:99:0,132,1480 0/0:43,0:43:99:0,114,1287 0/0:63,0:63:99:0,174,2009 0/0:45,0:45:99:0,111,1330 0/0:52,0:52:99:0,138,1639 13 31821992 . T C 35256.52 . AC=83;AF=0.988;AN=84;BaseQRankSum=5.744;DP=979;Dels=0.00;FS=6.387;HRun=0;HaplotypeScore=0.1816;InbreedingCoeff=-0.0121;MQ=59.38;MQ0=0;MQRankSum=-1.005;QD=36.01;ReadPosRankSum=1.478 GT:AD:DP:GQ:PL 1/1:0,19:19:54.16:665,54,0 1/1:0,19:19:57.18:728,57,0 1/1:0,12:12:36.11:451,36,0 1/1:0,33:33:93.30:1246,93,0 1/1:0,39:39:99:1550,114,0 1/1:0,33:33:93.31:1261,93,0 1/1:0,30:30:84.28:1142,84,0 1/1:0,28:28:81.25:1074,81,0 1/1:0,20:21:60.18:743,60,0 1/1:0,14:14:39.13:505,39,0 1/1:0,16:16:45.14:564,45,0 1/1:0,20:20:57.18:716,57,0 1/1:0,18:18:51.13:634,51,0 1/1:0,17:17:45.14:578,45,0 1/1:0,67:67:99:2282,181,0 1/1:0,15:15:45.14:567,45,0 1/1:0,18:18:54.17:683,54,0 1/1:0,19:19:54.17:686,54,0 1/1:0,29:29:87.25:1071,87,0 1/1:0,40:40:99:1446,114,0 1/1:0,36:36:99:1341,105,0 1/1:0,17:17:51.14:625,51,0 0/1:22,10:32:99:321,0,674 1/1:1,27:28:78.24:1026,78,0 1/1:0,30:30:87.28:1169,87,0 1/1:0,24:24:69.23:928,69,0 1/1:0,15:15:45.15:578,45,0 1/1:0,20:20:57.18:721,57,0 1/1:0,14:14:39.12:492,39,0 1/1:0,12:13:36.11:456,36,0 1/1:0,16:16:48.15:606,48,0 1/1:0,37:37:99:1350,105,0 1/1:0,16:16:48.14:584,48,0 1/1:0,16:16:48.15:608,48,0 1/1:0,22:22:66.21:830,66,0 1/1:0,22:22:66.21:843,66,0 1/1:0,31:31:90.29:1142,90,0 1/1:0,17:17:51.14:613,51,0 1/1:0,14:14:42.13:530,42,0 1/1:0,17:17:51.16:642,51,0 1/1:0,20:20:57.18:715,57,0 1/1:0,15:15:42.14:545,42,0 13 31897993 . C CT 8044.72 . AC=39;AF=0.464;AN=84;BaseQRankSum=-12.103;DP=10042;DS;FS=3200.000;HRun=2;HaplotypeScore=569.7146;InbreedingCoeff=-0.8700;MQ=60.05;MQ0=0;MQRankSum=5.984;QD=0.86;ReadPosRankSum=-37.825 GT:AD:DP:GQ:PL 0/1:225,2:227:99:149,0,4179 0/1:245,1:246:99:265,0,4556 0/1:169,65:234:99:214,0,4572 0/1:176,74:250:45.16:45,0,4794 0/1:183,67:250:99:313,0,5064 0/1:178,72:249:99:347,0,4358 0/1:175,75:244:99:304,0,4740 0/1:248,2:245:99:169,0,4589 0/1:228,0:228:99:294,0,4588 0/1:241,0:241:99:282,0,4505 0/1:169,68:237:99:215,0,4538 0/1:248,0:248:99:160,0,4700 0/1:227,0:227:71.53:72,0,4416 0/1:236,1:237:90.17:90,0,4571 0/1:197,53:250:58.65:59,0,5244 0/1:234,0:234:99:375,0,4314 0/1:171,59:230:99:141,0,4316 0/1:223,0:223:99:278,0,4259 0/1:248,2:250:99:437,0,4576 0/1:177,73:250:60.94:61,0,4919 0/1:248,2:250:99:174,0,4972 0/0:216,3:219:99:0,118,4704 0/0:195,55:250:83.25:0,83,5400 0/1:182,68:247:99:113,0,4829 0/1:163,87:247:99:549,0,3906 0/1:249,1:246:99:149,0,4418 0/1:158,52:210:99:163,0,4104 0/1:167,59:226:99:128,0,4023 0/1:236,0:236:99:167,0,4736 0/1:154,50:204:99:164,0,3970 0/1:239,1:240:99:224,0,4679 0/0:246,4:250:5.15:0,5,5002 0/1:241,1:242:50.17:50,0,4929 0/1:244,0:243:99:366,0,4182 0/1:235,0:234:99:288,0,4244 0/1:199,48:247:7.40:7,0,5633 0/1:247,0:247:99:107,0,4996 0/1:233,1:234:99:213,0,4504 0/1:233,1:233:99:154,0,4481 0/1:237,0:237:99:268,0,4534 0/1:238,0:238:99:105,0,4756 0/1:237,0:237:99:383,0,4425 13 31897995 . TGGGAATCCC T 5046.31 . 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G T 2463.30 . 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G A 3650.45 . 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A G 47537.84 . AC=54;AF=0.643;AN=84;BaseQRankSum=25.512;DP=2527;Dels=0.00;FS=4.825;HRun=0;HaplotypeScore=1.1228;InbreedingCoeff=0.0667;MQ=59.30;MQ0=0;MQRankSum=0.909;QD=22.84;ReadPosRankSum=1.035 GT:AD:DP:GQ:PL 0/1:28,21:49:99:615,0,817 1/1:0,56:56:99:1841,141,0 1/1:0,52:52:99:1843,144,0 1/1:0,104:105:99:3443,253,0 1/1:0,96:97:99:3369,244,0 1/1:0,89:89:99:3277,244,0 1/1:0,90:90:99:3274,241,0 0/1:43,44:87:99:1304,0,1294 1/1:0,51:51:99:1674,129,0 1/1:0,34:34:90.29:1175,90,0 0/1:39,23:62:99:558,0,1102 0/1:28,10:38:99:267,0,823 0/0:57,1:58:99:0,108,1728 0/1:33,23:56:99:692,0,948 0/0:186,0:186:99:0,478,5964 0/0:38,0:38:96.30:0,96,1202 0/0:53,1:54:99:0,100,1646 1/1:0,45:45:99:1588,126,0 1/1:0,36:36:96.29:1197,96,0 1/1:0,44:44:99:1496,117,0 1/1:0,52:52:99:1784,138,0 1/1:0,21:21:63.20:804,63,0 0/1:88,44:132:99:1247,0,2499 0/1:53,39:92:99:1234,0,1560 0/1:32,54:87:99:1615,0,797 0/1:56,38:94:99:983,0,1561 0/1:25,22:47:99:625,0,660 0/0:52,0:52:99:0,132,1637 1/1:0,46:46:99:1530,117,0 1/1:1,52:53:99:1733,101,0 1/1:0,34:34:93.29:1199,93,0 0/1:14,21:35:99:605,0,398 1/1:0,46:46:99:1609,126,0 0/1:18,28:46:99:884,0,482 0/1:27,18:45:99:524,0,798 0/1:31,12:43:99:327,0,886 1/1:0,32:33:78.24:988,78,0 0/1:19,25:44:99:686,0,519 0/1:26,18:44:99:490,0,798 0/0:58,0:58:99:0,153,1902 0/1:29,17:46:99:458,0,757 0/1:27,22:49:99:599,0,753 13 32360583 . A G 7870.74 . AC=13;AF=0.155;AN=84;BaseQRankSum=20.828;DP=2230;Dels=0.00;FS=2.156;HRun=0;HaplotypeScore=0.8676;InbreedingCoeff=0.1809;MQ=59.39;MQ0=0;MQRankSum=-1.320;QD=16.30;ReadPosRankSum=-0.282 GT:AD:DP:GQ:PL 0/0:37,0:38:99:0,105,1234 0/0:58,0:58:99:0,162,1906 0/0:51,0:51:99:0,129,1578 0/0:87,0:87:99:0,238,2837 0/0:94,0:95:99:0,250,3040 0/1:37,41:78:99:1225,0,1033 0/1:43,41:84:99:1349,0,1202 0/0:70,0:70:99:0,190,2260 0/0:40,0:40:99:0,114,1339 0/0:33,0:33:81.24:0,81,991 0/0:46,1:47:98.42:0,98,1518 0/0:37,0:37:99:0,105,1247 0/0:46,0:46:99:0,126,1497 0/0:34,0:34:93.26:0,93,1105 0/0:163,0:164:99:0,418,5066 0/0:34,0:34:99:0,99,1148 0/0:41,1:42:81.23:0,81,1344 0/1:19,24:43:99:717,0,514 0/0:33,0:33:87.24:0,87,1019 0/0:42,0:43:99:0,111,1356 0/1:27,25:52:99:714,0,722 0/1:9,7:16:99:190,0,266 0/0:145,0:145:99:0,379,4589 0/0:86,0:86:99:0,238,2881 0/0:82,0:82:99:0,223,2686 0/0:77,0:77:99:0,211,2582 0/1:23,14:37:99:434,0,644 0/0:47,0:47:99:0,135,1609 1/1:1,38:39:73.09:1314,73,0 0/0:47,0:47:99:0,126,1529 0/0:30,0:30:87.25:0,87,1015 0/1:20,12:32:99:290,0,473 0/0:28,0:28:75.20:0,75,885 0/0:56,1:57:99:0,115,1759 0/0:35,0:35:99:0,99,1176 0/0:37,0:37:99:0,111,1317 1/1:0,19:19:54.16:681,54,0 0/1:23,21:44:99:646,0,657 0/1:27,11:39:99:311,0,738 0/0:53,0:53:99:0,147,1755 0/0:33,0:33:99:0,99,1137 0/0:38,0:38:99:0,105,1270 13 32360702 . G A 26.15 . AC=3;AF=0.036;AN=84;BaseQRankSum=-7.147;DP=1914;Dels=0.00;FS=64.321;HRun=10;HaplotypeScore=2.7328;InbreedingCoeff=-0.0511;MQ=59.17;MQ0=0;MQRankSum=0.229;QD=0.25;ReadPosRankSum=-10.461 GT:AD:DP:GQ:PL 0/0:40,1:41:77.74:0,78,1308 0/0:44,0:44:99:0,120,1501 0/1:31,5:37:60.40:60,0,1010 0/0:51,0:51:99:0,126,1679 0/0:64,4:68:99:0,103,2141 0/0:54,4:58:99:0,125,1964 0/0:58,7:65:51.50:0,51,1848 0/0:48,0:48:99:0,132,1785 0/0:25,1:26:33.65:0,34,837 0/0:35,4:39:0.46:9,0,1030 0/0:41,0:41:99:0,105,1356 0/0:38,2:40:74.36:0,74,1312 0/0:43,0:43:99:0,120,1501 0/0:34,2:36:94.12:0,94,1109 0/0:126,0:127:99:0,328,4202 0/0:29,0:29:84.27:0,84,1068 0/0:31,0:32:90.29:0,90,1135 0/0:35,1:36:96.76:0,97,1179 0/0:36,2:38:60.07:0,60,1101 0/0:24,0:24:66.20:0,66,828 0/0:51,1:52:99:0,104,1700 0/0:27,2:29:5.65:0,6,789 0/0:71,0:71:99:0,190,2542 0/0:52,2:54:97.25:0,97,1737 0/0:67,2:69:99:0,141,2345 0/0:58,0:58:99:0,147,1973 0/0:25,1:26:50.52:0,51,840 0/0:47,1:49:99:0,123,1536 0/0:39,3:42:45.40:0,45,1311 0/0:36,2:38:55.71:0,56,1084 0/1:30,4:34:18.40:18,0,963 0/0:48,3:51:66.73:0,67,1517 0/1:29,5:34:18.43:18,0,842 0/0:35,0:35:99:0,99,1235 0/0:42,0:42:99:0,108,1359 0/0:45,0:45:99:0,117,1479 0/0:54,3:57:99:0,100,1622 0/0:32,1:34:82.14:0,82,1040 0/0:37,1:38:96.30:0,96,1225 0/0:49,0:49:99:0,141,1750 0/0:45,0:45:99:0,132,1626 0/0:38,1:39:93:0,93,1267 13 32760476 . C A 5408.38 . AC=3;AF=0.036;AN=84;BaseQRankSum=-18.147;DP=5217;DS;Dels=0.00;FS=2.786;HRun=0;HaplotypeScore=2.0760;InbreedingCoeff=-0.0370;MQ=59.59;MQ0=0;MQRankSum=0.291;QD=13.22;ReadPosRankSum=0.815 GT:AD:DP:GQ:PL 0/0:89,0:89:99:0,250,3216 0/0:100,0:100:99:0,283,3621 0/0:81,0:81:99:0,235,2962 0/0:238,0:238:99:0,674,9192 0/0:231,0:231:99:0,653,8954 0/0:220,0:221:99:0,632,8599 0/0:177,1:178:99:0,483,6927 0/0:206,0:206:99:0,584,7951 0/0:94,0:94:99:0,259,3326 0/0:82,0:82:99:0,235,2996 0/0:83,0:83:99:0,232,2955 0/0:87,0:87:99:0,250,3187 0/0:78,0:78:99:0,226,2843 0/0:74,0:74:99:0,202,2610 0/0:245,0:245:99:0,662,8484 0/0:66,0:66:99:0,193,2458 0/0:83,0:83:99:0,244,3085 0/0:87,0:87:99:0,241,3067 0/0:131,0:131:99:0,373,4802 0/0:146,0:147:99:0,397,5153 0/0:178,0:178:99:0,491,6332 0/0:106,0:106:99:0,304,3863 0/1:133,117:250:99:3441,0,4402 0/0:212,0:212:99:0,596,8149 0/0:189,0:189:99:0,548,7520 0/0:193,0:193:99:0,542,7368 0/0:48,0:48:99:0,138,1698 0/0:87,0:87:99:0,250,3197 0/0:62,1:63:99:0,175,2263 0/0:81,0:81:99:0,223,2872 0/0:72,0:72:99:0,205,2634 0/0:166,1:167:99:0,423,5878 0/0:91,1:92:99:0,217,3198 0/1:40,35:75:99:1022,0,1203 0/1:49,35:84:99:946,0,1627 0/0:107,0:107:99:0,295,3799 0/0:154,0:154:99:0,415,5317 0/0:100,0:100:99:0,289,3649 0/0:73,0:73:99:0,211,2667 0/0:110,0:110:99:0,304,3892 0/0:82,0:82:99:0,229,2924 0/0:92,1:93:99:0,233,3306 13 32768423 . G A 1313.20 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.647;DP=3596;Dels=0.00;FS=6.469;HRun=0;HaplotypeScore=1.3270;InbreedingCoeff=-0.0120;MQ=59.57;MQ0=1;MQRankSum=0.855;QD=11.83;ReadPosRankSum=0.445 GT:AD:DP:GQ:PL 0/0:69,0:69:99:0,181,2302 0/0:64,0:64:99:0,165,2046 0/0:49,0:49:99:0,132,1681 0/0:167,0:167:99:0,421,5706 0/0:150,0:150:99:0,409,5470 0/0:143,0:143:99:0,385,5212 0/1:57,53:111:99:1359,0,1908 0/0:144,0:144:99:0,382,5156 0/0:50,0:50:99:0,141,1790 0/0:48,0:48:99:0,138,1729 0/0:61,0:61:99:0,172,2127 0/0:60,0:60:99:0,172,2114 0/0:49,0:49:99:0,132,1637 0/0:65,0:65:99:0,178,2207 0/0:228,0:228:99:0,599,7575 0/0:67,0:67:99:0,187,2315 0/0:58,0:58:99:0,172,2110 0/0:70,0:70:99:0,190,2366 0/0:110,0:110:99:0,301,3667 0/0:93,0:93:99:0,256,3238 0/0:83,0:84:99:0,220,2756 0/0:66,0:66:99:0,166,2106 0/0:179,0:179:99:0,482,6576 0/0:132,0:132:99:0,346,4710 0/0:117,0:117:99:0,298,4069 0/0:110,0:110:99:0,295,3971 0/0:46,0:46:99:0,135,1682 0/0:68,0:68:99:0,193,2396 0/0:55,0:55:99:0,147,1853 0/0:60,0:60:99:0,172,2119 0/0:65,0:66:99:0,172,2190 0/0:79,0:79:99:0,211,2668 0/0:39,0:39:99:0,111,1379 0/0:74,0:74:99:0,193,2422 0/0:69,0:69:99:0,190,2401 0/0:71,0:71:99:0,187,2316 0/0:101,0:101:99:0,262,3338 0/0:56,0:56:99:0,153,1903 0/0:62,0:62:99:0,181,2210 0/0:75,0:75:99:0,208,2570 0/0:69,0:69:99:0,196,2429 0/0:61,0:61:99:0,175,2165 13 32776153 . T C 7261.69 . AC=5;AF=0.060;AN=84;BaseQRankSum=-3.690;DP=4287;DS;Dels=0.00;FS=2.243;HRun=0;HaplotypeScore=1.5815;InbreedingCoeff=-0.0633;MQ=59.56;MQ0=0;MQRankSum=0.578;QD=12.29;ReadPosRankSum=0.664 GT:AD:DP:GQ:PL 0/0:87,0:87:99:0,229,2846 0/0:75,0:75:99:0,193,2401 0/0:81,0:81:99:0,214,2657 0/1:99,95:194:99:2609,0,2697 0/1:102,88:190:99:2453,0,2796 0/0:198,0:198:99:0,527,6822 0/0:176,0:176:99:0,451,5826 0/0:156,0:156:99:0,403,5188 0/0:81,0:81:99:0,229,2781 0/1:32,27:59:99:608,0,916 0/0:62,0:62:99:0,169,2071 0/0:64,0:64:99:0,169,2099 0/0:66,0:66:99:0,175,2161 0/0:73,0:73:99:0,202,2480 0/0:241,0:241:99:0,602,7517 0/0:53,0:53:99:0,141,1748 0/0:88,1:89:99:0,201,2847 0/0:71,0:71:99:0,199,2464 0/0:84,0:84:99:0,238,2906 0/0:84,0:84:99:0,208,2655 0/0:116,0:116:99:0,292,3652 0/0:54,0:54:99:0,141,1753 0/0:211,0:211:99:0,560,7085 0/0:166,0:166:99:0,436,5548 0/0:188,0:188:99:0,485,6205 0/0:159,0:159:99:0,415,5287 0/0:55,0:55:99:0,147,1819 0/0:90,0:90:99:0,238,2956 0/0:74,0:74:99:0,196,2434 0/0:69,0:69:99:0,190,2316 0/0:71,0:71:99:0,184,2316 0/0:101,0:101:99:0,259,3250 0/0:48,0:48:99:0,126,1555 0/0:74,0:74:99:0,205,2489 0/0:82,0:82:99:0,214,2682 0/0:81,0:81:99:0,226,2791 0/1:49,30:79:99:698,0,1364 0/0:92,0:92:99:0,253,3092 0/1:34,34:68:99:894,0,975 0/0:74,0:74:99:0,202,2509 0/0:61,0:61:99:0,172,2102 0/0:89,0:89:99:0,247,3048 13 32776603 . T C 37814.40 . 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G A 808.11 . 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T A 6114.01 . 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T C 492.63 . 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A G 2526.18 . 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T G 12387.02 . AC=6;AF=0.071;AN=84;BaseQRankSum=8.909;DP=6257;DS;Dels=0.00;FS=12.350;HRun=1;HaplotypeScore=2.8068;InbreedingCoeff=-0.0769;MQ=59.42;MQ0=0;MQRankSum=-0.281;QD=14.49;ReadPosRankSum=-3.189 GT:AD:DP:GQ:PL 0/0:119,0:119:99:0,340,4188 0/0:129,0:129:99:0,361,4431 0/0:114,1:115:99:0,269,3763 0/0:202,0:202:99:0,563,7032 0/0:190,0:190:99:0,527,6676 0/0:203,0:203:99:0,557,7144 0/0:209,1:210:99:0,537,7196 0/1:97,94:192:99:2896,0,2706 0/0:131,0:131:99:0,367,4482 0/0:120,0:120:99:0,328,4003 0/0:118,0:118:99:0,325,4005 0/0:123,0:123:99:0,352,4312 0/0:84,0:84:99:0,241,2925 0/0:119,0:119:99:0,331,4140 0/0:233,0:233:99:0,644,7867 0/0:113,0:113:99:0,319,3866 0/0:124,0:124:99:0,346,4251 0/0:121,1:122:99:0,304,4096 0/0:187,1:188:99:0,515,6304 0/0:207,0:207:99:0,578,7053 0/0:190,0:190:99:0,502,6177 0/0:137,0:137:99:0,370,4511 0/0:228,3:231:99:0,570,8038 0/0:185,0:185:99:0,527,6555 0/0:183,0:185:99:0,506,6375 0/1:99,91:190:99:2759,0,2805 0/0:94,0:94:99:0,262,3239 0/0:106,0:106:99:0,304,3751 0/0:109,0:109:99:0,301,3720 0/0:120,0:120:99:0,340,4191 0/1:62,55:117:99:1599,0,1833 0/0:190,1:191:99:0,509,6351 0/0:163,0:163:99:0,457,5639 0/1:56,58:114:99:1639,0,1638 0/1:56,62:118:99:1879,0,1609 0/1:66,57:124:99:1615,0,1944 0/0:205,1:206:99:0,536,6663 0/0:115,0:116:99:0,331,3989 0/0:133,1:134:99:0,327,4417 0/0:123,0:123:99:0,346,4307 0/0:112,1:113:99:0,301,3707 0/0:149,0:149:99:0,418,5149 13 33741716 . C T 899.32 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.909;DP=2540;Dels=0.00;FS=11.834;HRun=0;HaplotypeScore=1.6902;InbreedingCoeff=-0.0244;MQ=59.27;MQ0=1;MQRankSum=0.212;QD=9.88;ReadPosRankSum=2.102 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,169,2088 0/0:61,0:61:99:0,153,1943 0/0:40,0:40:99:0,108,1358 0/0:99,0:99:99:0,250,3332 0/0:96,0:97:99:0,250,3327 0/1:33,19:52:99:509,0,1052 0/1:22,17:39:99:452,0,629 0/0:86,0:86:99:0,208,2780 0/0:37,0:37:96.30:0,96,1214 0/0:39,0:39:99:0,102,1286 0/0:46,0:46:99:0,129,1592 0/0:44,0:44:99:0,105,1304 0/0:44,0:44:99:0,117,1416 0/0:52,0:52:99:0,141,1776 0/0:169,0:171:99:0,412,5125 0/0:43,0:44:99:0,120,1462 0/0:57,0:57:99:0,153,1890 0/0:52,0:52:99:0,135,1643 0/0:78,0:80:99:0,199,2384 0/0:83,0:83:99:0,214,2728 0/0:68,0:69:99:0,159,2014 0/0:39,0:39:99:0,111,1356 0/0:123,0:125:99:0,325,4346 0/0:57,0:57:99:0,150,1978 0/0:64,0:64:99:0,163,2174 0/0:47,0:47:99:0,123,1629 0/0:37,0:37:96.27:0,96,1184 0/0:50,0:50:99:0,132,1650 0/0:40,0:40:99:0,108,1300 0/0:63,0:63:99:0,171,2099 0/0:60,0:60:99:0,159,2001 0/0:74,0:75:99:0,187,2382 0/0:55,0:55:99:0,138,1750 0/0:45,0:46:99:0,126,1502 0/0:58,0:58:99:0,144,1788 0/0:69,0:69:99:0,165,2072 0/0:68,0:68:99:0,171,2106 0/0:41,0:41:99:0,111,1380 0/0:46,0:46:99:0,117,1447 0/0:55,0:55:99:0,144,1791 0/0:45,0:45:99:0,111,1400 0/0:44,0:44:99:0,126,1535 13 34395310 . A T 1483.34 . 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A G 2807 . 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T C 82136.99 . 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A G 156.82 . 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A G 2916.82 . 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A G 1954.97 . 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C T 5951.94 . 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G A 28958.09 . 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C T 36659.51 . 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G A 2047.32 . 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G A 1271.89 . 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T G 22868.15 . 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A G 9667.17 . 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A G 346.52 . 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C T 1418.22 . 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C T 17141.11 . 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G A 2167.60 . 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C T 82311.15 . 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A C 104.95 . 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A AC 106.97 . 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C G 1070.24 . 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C T 3621.36 . 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G C 53466.97 . 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G A 3444.54 . AC=10;AF=0.119;AN=84;BaseQRankSum=-9.143;DP=1127;Dels=0.00;FS=1.161;HRun=0;HaplotypeScore=0.3715;InbreedingCoeff=-0.1479;MQ=58.84;MQ0=0;MQRankSum=0.014;QD=13.05;ReadPosRankSum=-0.805 GT:AD:DP:GQ:PL 0/1:7,11:18:99:319,0,149 0/0:20,0:20:54.17:0,54,683 0/0:14,0:14:39.12:0,39,493 0/1:23,14:37:99:368,0,619 0/1:24,20:44:99:594,0,578 0/0:42,0:42:99:0,105,1418 0/0:34,0:34:96.30:0,96,1280 0/0:45,0:45:99:0,117,1600 0/0:21,0:21:60.16:0,60,727 0/0:18,0:18:51.16:0,51,649 0/0:14,0:14:39.11:0,39,470 0/0:27,0:27:75.24:0,75,960 0/0:32,0:32:87.23:0,87,1080 0/0:15,0:15:36.12:0,36,470 0/0:90,0:90:99:0,199,2544 0/0:20,0:20:48.16:0,48,635 0/0:20,0:20:54.16:0,54,685 0/0:20,0:20:54.16:0,54,687 0/0:26,0:26:69.21:0,69,860 0/0:33,0:33:78.24:0,78,1015 0/0:21,0:21:54.17:0,54,687 0/0:12,1:13:1.16:5,0,330 0/1:27,22:49:99:605,0,651 0/0:36,0:36:90.29:0,90,1221 0/0:30,0:30:75.24:0,75,1014 0/0:38,0:38:90.29:0,90,1215 0/0:19,0:19:48.15:0,48,616 0/0:28,0:28:78.25:0,78,1003 0/0:19,0:19:42.14:0,42,565 0/1:7,7:14:99:208,0,186 0/1:10,7:17:99:206,0,295 0/0:29,0:29:75.24:0,75,977 0/1:11,14:25:99:314,0,286 0/0:21,0:21:57.18:0,57,718 0/0:16,0:16:42.14:0,42,542 0/1:11,9:20:99:242,0,323 0/0:26,0:26:57.17:0,57,725 0/0:27,0:27:72.23:0,72,915 0/0:27,0:27:66.20:0,66,839 0/1:11,12:23:99:311,0,290 0/0:21,1:22:12.02:0,12,550 0/1:8,9:17:99:272,0,257 13 40229891 . G A 2038.41 . AC=32;AF=0.390;AN=82;BaseQRankSum=3.534;DP=200;Dels=0.00;FS=7.419;HRun=0;HaplotypeScore=0.2122;InbreedingCoeff=0.0452;MQ=58.51;MQ0=0;MQRankSum=-0.082;QD=15.80;ReadPosRankSum=-0.051 GT:AD:DP:GQ:PL 0/0:8,0:8:24.05:0,24,246 0/0:5,0:5:12.03:0,12,131 0/1:1,3:4:19.52:96,0,20 0/1:2,7:9:40.81:187,0,41 1/1:0,7:7:21.04:229,21,0 0/0:4,0:4:12.04:0,12,145 1/1:0,4:4:12.04:144,12,0 0/0:6,0:6:15.04:0,15,163 1/1:1,2:3:6.02:73,6,0 0/1:2,3:5:46.15:83,0,46 0/0:2,0:2:6.01:0,6,59 0/0:6,0:6:15.04:0,15,173 0/0:1,0:1:3.01:0,3,31 0/0:1,0:1:3.01:0,3,30 0/1:2,7:9:49.25:154,0,49 0/1:7,3:10:81.77:82,0,108 0/1:1,2:3:24.41:59,0,24 0/0:2,0:2:6.02:0,6,69 0/0:4,0:4:9.01:0,9,88 0/0:5,0:5:15.04:0,15,162 1/1:1,2:3:6.01:63,6,0 0/1:1,2:3:23.47:60,0,23 0/1:7,7:14:99:196,0,156 1/1:0,4:4:12.03:130,12,0 0/1:3,3:6:76.06:91,0,76 0/1:3,2:5:60.19:60,0,69 0/0:7,0:7:15.02:0,15,149 ./. 0/1:1,2:3:20.60:65,0,21 0/1:5,1:6:18.94:19,0,137 1/1:0,3:4:9.02:100,9,0 0/0:8,0:8:21.05:0,21,235 0/1:5,2:7:50.18:50,0,139 0/1:4,1:5:24.10:24,0,87 1/1:0,2:2:5.99:48,6,0 0/0:4,0:4:12.03:0,12,130 0/1:4,2:6:51.51:52,0,126 0/0:2,0:2:6.02:0,6,65 1/1:0,4:4:12.04:141,12,0 0/1:2,1:3:26.48:33,0,26 0/0:4,0:4:9.03:0,9,105 0/0:2,0:2:6.01:0,6,60 13 40229957 . T A 3125.47 . AC=27;AF=0.321;AN=84;BaseQRankSum=2.452;DP=338;Dels=0.00;FS=4.667;HRun=0;HaplotypeScore=0.3306;InbreedingCoeff=-0.1776;MQ=58.60;MQ0=0;MQRankSum=-1.526;QD=15.03;ReadPosRankSum=-0.306 GT:AD:DP:GQ:PL 0/0:3,0:3:9.03:0,9,111 0/1:1,1:2:27.42:27,0,29 0/1:1,4:5:23.53:137,0,24 0/1:13,11:24:99:337,0,290 0/1:10,12:22:99:379,0,254 0/0:10,0:10:30.09:0,30,363 0/1:2,2:4:61.07:61,0,61 0/0:13,0:13:36.11:0,36,446 0/1:4,2:6:54.12:54,0,104 0/1:4,1:5:27.95:28,0,67 0/0:10,0:10:21.06:0,21,248 0/0:6,0:6:18.05:0,18,212 0/0:3,0:3:9.03:0,9,112 0/0:7,0:7:15.03:0,15,188 0/1:17,7:24:99:167,0,456 0/1:4,2:6:15.55:16,0,126 0/1:2,2:4:59.35:64,0,59 0/0:3,0:3:9.03:0,9,105 0/0:10,0:10:30.09:0,30,370 0/0:13,0:13:36.10:0,36,422 0/1:2,6:8:43.50:198,0,43 0/1:1,2:3:26.23:64,0,26 0/1:11,10:21:99:280,0,282 1/1:0,7:7:21.07:270,21,0 0/1:2,5:7:52.04:166,0,52 0/1:1,1:2:27.42:27,0,27 0/0:6,0:6:15.05:0,15,181 0/0:4,0:4:12.01:0,12,130 0/1:2,5:7:46.51:157,0,47 0/1:6,1:7:17.51:18,0,201 1/1:0,10:10:27.09:346,27,0 0/0:13,0:13:27.06:0,27,346 0/1:3,5:8:49.35:163,0,49 0/1:4,3:7:61.07:61,0,124 1/1:0,3:3:9.03:110,9,0 0/0:4,0:4:12.01:0,12,132 0/1:5,1:7:18.08:18,0,162 0/0:8,0:8:24.07:0,24,279 0/1:3,6:9:88.33:171,0,88 0/0:5,0:5:15.03:0,15,165 0/0:2,0:2:6.02:0,6,75 0/0:10,0:10:24.08:0,24,305 13 40325160 . T C 273.45 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.442;DP=2325;Dels=0.00;FS=1.113;HRun=1;HaplotypeScore=0.9046;InbreedingCoeff=-0.0120;MQ=59.43;MQ0=0;MQRankSum=0.794;QD=8.82;ReadPosRankSum=-0.750 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,123,1498 0/0:47,0:47:99:0,114,1426 0/0:45,0:45:99:0,126,1507 0/0:98,0:98:99:0,259,3207 0/0:98,0:98:99:0,262,3254 0/0:81,0:82:99:0,226,2864 0/0:80,0:80:99:0,217,2721 0/0:93,0:93:99:0,247,3083 0/0:41,0:41:99:0,114,1359 0/0:40,0:40:99:0,111,1342 0/0:47,0:48:99:0,123,1507 0/0:44,0:44:99:0,123,1484 0/0:41,0:41:99:0,120,1425 0/0:41,0:41:99:0,114,1372 0/0:137,0:137:99:0,358,4329 0/0:25,0:25:72.21:0,72,862 0/0:52,0:52:99:0,141,1701 0/0:53,0:53:99:0,153,1838 0/0:56,0:56:99:0,156,1889 0/0:61,1:62:99:0,156,1913 0/0:49,0:50:99:0,132,1580 0/0:35,0:35:99:0,99,1179 0/0:108,0:108:99:0,298,3669 0/0:85,0:85:99:0,214,2665 0/0:73,0:73:99:0,202,2483 0/0:86,0:86:99:0,223,2802 0/0:23,0:23:66.20:0,66,804 0/0:40,0:40:99:0,117,1403 0/0:27,0:27:78.23:0,78,923 0/0:40,0:40:99:0,111,1350 0/1:19,12:31:99:320,0,557 0/0:60,0:60:99:0,153,1918 0/0:32,0:32:90.25:0,90,1061 0/0:38,0:39:99:0,105,1275 0/0:27,0:27:72.22:0,72,887 0/0:51,0:51:99:0,135,1656 0/0:46,0:46:99:0,114,1418 0/0:53,0:53:99:0,153,1823 0/0:42,0:42:99:0,117,1430 0/0:54,0:54:99:0,153,1868 0/0:50,0:50:99:0,147,1735 0/0:44,0:44:99:0,120,1449 13 41323397 . C T 12675.52 . AC=12;AF=0.143;AN=84;BaseQRankSum=-22.069;DP=3401;DS;Dels=0.00;FS=1.935;HRun=1;HaplotypeScore=1.0107;InbreedingCoeff=0.0278;MQ=59.08;MQ0=3;MQRankSum=7.882;QD=16.11;ReadPosRankSum=-1.315 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,159,2014 0/0:58,0:58:99:0,159,2012 0/0:58,0:58:99:0,156,1983 0/0:143,0:143:99:0,397,5328 0/0:141,0:141:99:0,382,5193 0/0:156,0:156:99:0,433,5864 0/0:147,0:147:99:0,400,5434 0/1:43,46:89:99:1310,0,1412 0/1:29,26:55:99:749,0,940 0/0:53,0:53:99:0,153,1961 1/1:2,70:72:99:2417,172,0 0/0:55,0:55:99:0,160,2020 0/0:50,0:50:99:0,135,1737 0/1:34,32:66:99:964,0,927 0/0:167,0:167:99:0,451,5771 0/0:41,0:41:99:0,117,1468 0/1:37,26:63:99:730,0,1163 0/0:64,0:64:99:0,169,2133 0/1:33,44:77:99:1326,0,851 0/1:41,44:85:99:1191,0,1200 0/0:78,0:78:99:0,217,2773 0/0:50,0:51:99:0,135,1746 0/0:157,0:158:99:0,445,6063 0/0:117,1:118:99:0,302,4433 0/0:148,0:148:99:0,406,5503 0/0:121,0:121:99:0,334,4466 0/0:37,0:37:99:0,105,1323 0/0:71,0:71:99:0,199,2554 0/0:60,0:60:99:0,163,2079 0/0:64,0:65:99:0,184,2359 0/0:53,0:53:99:0,150,1902 0/0:69,0:69:99:0,181,2327 0/1:31,23:54:99:647,0,841 0/0:61,0:61:99:0,178,2225 0/0:69,0:69:99:0,199,2523 0/0:59,0:59:99:0,162,2029 0/1:38,50:88:99:1429,0,1065 0/1:37,30:67:99:861,0,1136 0/1:32,39:71:99:1051,0,1011 0/0:68,0:69:99:0,196,2472 0/0:46,0:46:99:0,132,1658 0/0:89,0:89:99:0,250,3143 13 41517985 . A G 32853.27 . AC=55;AF=0.655;AN=84;BaseQRankSum=-12.704;DP=1689;Dels=0.00;FS=0.874;HRun=0;HaplotypeScore=0.5991;InbreedingCoeff=-0.1060;MQ=59.39;MQ0=0;MQRankSum=-0.422;QD=21.47;ReadPosRankSum=0.234 GT:AD:DP:GQ:PL 0/0:37,0:37:90.28:0,90,1146 0/1:18,14:32:99:351,0,486 1/1:0,32:33:84.21:971,84,0 0/0:64,0:64:99:0,169,2087 0/1:27,20:47:99:577,0,803 1/1:0,49:49:99:1713,138,0 1/1:0,52:52:99:1696,135,0 0/1:23,28:51:99:765,0,648 1/1:0,29:29:72.20:838,72,0 1/1:0,23:23:57.16:679,57,0 1/1:0,38:38:93.27:1121,93,0 0/1:18,7:25:99:140,0,515 1/1:0,42:42:99:1236,111,0 0/1:14,16:30:99:437,0,355 1/1:0,124:124:99:3673,310,0 0/1:15,12:27:99:290,0,410 1/1:0,22:22:63.14:681,63,0 0/1:12,20:32:99:493,0,290 0/1:27,24:51:99:578,0,748 1/1:0,41:41:99:1239,105,0 0/1:24,24:48:99:589,0,637 0/1:6,11:17:99:285,0,122 0/1:41,26:67:99:711,0,1191 1/1:0,58:58:99:1825,147,0 1/1:0,45:45:99:1458,114,0 1/1:0,60:60:99:2000,159,0 0/1:20,13:33:99:326,0,594 0/1:21,17:38:99:413,0,593 0/1:12,18:30:99:448,0,326 0/0:29,0:29:78.24:0,78,975 0/0:29,0:29:81.25:0,81,1002 1/1:0,33:33:81.23:977,81,0 0/1:10,9:19:99:250,0,281 1/1:0,31:31:81.22:945,81,0 0/1:20,13:33:99:334,0,547 0/1:22,23:45:99:582,0,604 1/1:0,50:50:99:1375,114,0 0/1:13,21:34:99:527,0,374 0/1:25,22:47:99:540,0,712 1/1:0,36:36:99:1134,102,0 0/1:14,12:26:99:308,0,401 0/1:18,14:32:99:350,0,531 13 41518032 . A G 1274.56 . AC=25;AF=0.298;AN=84;BaseQRankSum=-8.842;DP=1901;Dels=0.00;FS=2397.307;HRun=4;HaplotypeScore=1.1982;InbreedingCoeff=-0.4282;MQ=59.12;MQ0=0;MQRankSum=0.966;QD=1.33;ReadPosRankSum=-21.554 GT:AD:DP:GQ:PL 0/1:25,10:35:14.20:14,0,781 0/0:27,11:38:13.25:0,13,770 0/1:29,10:39:99:109,0,913 0/1:46,19:65:99:204,0,1455 0/1:37,22:59:57.10:57,0,1155 0/0:51,23:74:62.72:0,63,1700 0/0:40,15:55:74.82:0,75,1343 0/0:43,16:59:69.24:0,69,1500 0/1:30,14:44:69.78:70,0,886 0/0:15,8:23:22.45:0,22,513 0/1:25,13:38:82.34:82,0,801 0/1:21,8:29:62.10:62,0,694 0/0:30,15:45:65.83:0,66,998 0/0:26,8:34:9.99:0,10,780 0/0:99,35:134:99:0,177,3116 0/1:19,10:29:99:106,0,571 0/1:19,8:27:6.83:7,0,601 0/1:19,12:31:63.25:63,0,590 0/0:39,8:47:31.44:0,31,1271 0/0:35,14:49:4.76:0,5,1142 0/1:30,13:43:56.89:57,0,898 0/1:14,8:22:27.15:27,0,413 0/0:67,34:101:99:0,156,2221 0/0:44,23:67:61.44:0,61,1498 0/0:37,23:60:39.30:0,39,1202 0/0:44,16:60:99:0,122,1466 0/1:19,10:29:62.50:63,0,576 0/1:21,13:34:99:102,0,649 0/1:27,13:40:0.24:0,0,787 0/1:27,12:39:92.65:93,0,821 0/1:17,12:29:37.41:37,0,563 0/1:31,13:44:40.97:41,0,992 0/0:19,10:29:23.67:0,24,558 0/1:17,7:24:47.86:48,0,505 0/1:27,14:41:16.13:16,0,817 0/1:37,16:53:21.40:21,0,1183 0/1:37,16:53:30.91:31,0,1120 0/0:29,10:39:24.58:0,25,983 0/1:31,15:46:28.37:28,0,937 0/1:25,15:40:49.07:49,0,750 0/0:22,7:29:2.90:0,0,673 0/1:17,8:25:56.99:57,0,467 13 41902939 . T C 110784.53 . AC=76;AF=0.905;AN=84;BaseQRankSum=19.740;DP=3440;DS;Dels=0.00;FS=2.405;HRun=0;HaplotypeScore=1.1128;InbreedingCoeff=-0.1053;MQ=59.58;MQ0=0;MQRankSum=0.555;QD=32.20;ReadPosRankSum=1.319 GT:AD:DP:GQ:PL 0/1:45,30:76:99:795,0,1249 0/1:39,40:79:99:1111,0,1144 1/1:0,75:75:99:2576,202,0 1/1:0,121:121:99:4345,319,0 1/1:0,110:110:99:4082,298,0 1/1:0,128:128:99:4746,346,0 1/1:0,106:106:99:3825,277,0 1/1:0,130:130:99:4760,346,0 1/1:0,74:74:99:2708,211,0 1/1:0,64:64:99:2322,181,0 1/1:0,69:69:99:2452,190,0 0/1:48,34:82:99:957,0,1342 0/1:30,31:62:99:877,0,836 0/1:32,31:63:99:899,0,899 1/1:0,193:193:99:6735,521,0 1/1:0,42:42:99:1497,117,0 1/1:0,66:66:99:2298,178,0 1/1:0,70:70:99:2478,193,0 1/1:0,83:84:99:2911,232,0 1/1:0,73:73:99:2738,217,0 1/1:0,87:87:99:3051,241,0 1/1:0,54:54:99:1994,157,0 1/1:0,119:119:99:4399,319,0 1/1:0,109:109:99:3942,286,0 1/1:0,115:115:99:4433,325,0 1/1:0,86:86:99:3212,235,0 1/1:0,53:53:99:1949,153,0 1/1:0,59:59:99:2157,172,0 1/1:0,55:55:99:2032,160,0 1/1:0,80:80:99:2747,214,0 1/1:0,56:56:99:2051,163,0 1/1:0,99:99:99:3403,262,0 1/1:0,59:59:99:2189,172,0 0/1:27,36:63:99:1169,0,691 1/1:0,67:67:99:2355,184,0 0/1:35,44:79:99:1278,0,1009 1/1:0,66:67:99:2213,178,0 0/1:43,40:84:99:1141,0,1177 1/1:0,45:45:99:1548,120,0 1/1:0,82:82:99:2919,229,0 1/1:0,66:66:99:2267,175,0 1/1:0,89:89:99:3223,250,0 13 42164786 . A C 10.58 . AC=2;AF=0.024;AN=84;BaseQRankSum=-10.244;DP=1938;Dels=0.00;FS=135.947;HRun=2;HaplotypeScore=1.0648;InbreedingCoeff=-0.0443;MQ=59.15;MQ0=0;MQRankSum=0.222;QD=0.15;ReadPosRankSum=-6.831 GT:AD:DP:GQ:PL 0/0:38,4:42:84.19:0,84,950 0/0:29,6:35:79.77:0,80,912 0/0:37,4:41:90.22:0,90,1035 0/0:75,21:96:99:0,113,2105 0/0:63,18:81:58.20:0,58,1691 0/0:56,13:70:53.80:0,54,1497 0/0:51,10:61:53.45:0,53,1236 0/0:59,10:70:99:0,144,1637 0/0:17,7:24:6.85:0,7,408 0/0:25,7:32:35.60:0,36,730 0/0:32,5:37:81.19:0,81,928 0/1:27,12:39:36.37:36,0,714 0/0:27,2:29:72.18:0,72,835 0/0:24,6:30:57.14:0,57,653 0/0:93,43:136:99:0,181,2434 0/0:30,4:34:66.18:0,66,754 0/0:38,7:45:61.40:0,61,1088 0/0:32,6:38:23.83:0,24,729 0/1:23,10:33:35.15:35,0,568 0/0:43,13:56:77.56:0,78,1113 0/0:28,6:35:63.17:0,63,768 0/0:35,8:43:1.11:5,0,786 0/0:54,14:68:82.18:0,82,1472 0/0:41,6:47:96.27:0,96,1155 0/0:51,9:60:99:0,111,1302 0/0:55,9:64:82.43:0,82,1276 0/0:24,5:29:29.45:0,29,575 0/0:41,7:48:47.16:0,47,1059 0/0:19,5:24:51.12:0,51,571 0/0:32,11:44:62.52:0,63,938 0/0:31,8:39:10.18:0,10,708 0/0:38,6:44:99:0,99,1104 0/0:20,4:24:14.54:0,15,473 0/0:40,3:43:95.52:0,96,1078 0/0:23,7:30:50.51:0,51,572 0/0:36,8:44:84.22:0,84,969 0/0:31,11:42:72.21:0,72,844 0/0:29,8:37:0.28:0,0,639 0/0:44,8:52:64.79:0,65,1276 0/0:24,7:31:66.14:0,66,740 0/0:25,9:34:22.58:0,23,556 0/0:21,6:27:48.13:0,48,556 13 42273291 . T TG 47.23 . 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T G 36.24 . AC=2;AF=0.024;AN=84;BaseQRankSum=-35.173;DP=3832;DS;Dels=0.00;FS=380.976;HRun=1;HaplotypeScore=2.6730;InbreedingCoeff=-0.0252;MQ=58.96;MQ0=0;MQRankSum=-1.321;QD=0.16;ReadPosRankSum=-4.825 GT:AD:DP:GQ:PL 0/0:47,16:63:70.30:0,70,1478 0/0:34,22:56:72.57:0,73,1073 0/0:62,21:83:99:0,147,1912 0/0:87,62:149:99:0,183,2756 0/0:88,57:145:99:0,150,2761 0/0:81,45:126:71.61:0,72,2326 0/0:83,38:122:99:0,169,2592 0/0:76,39:115:99:0,160,2395 0/0:62,21:83:95.75:0,96,1918 0/0:37,13:50:72.65:0,73,1105 0/0:52,14:66:99:0,147,1720 0/0:44,25:69:99:0,123,1374 0/0:35,9:44:85.61:0,86,1223 0/0:39,21:60:99:0,111,1310 0/0:140,77:218:99:0,195,4388 0/0:43,17:60:52.41:0,52,1353 0/0:47,24:71:99:0,117,1538 0/0:56,27:83:88.39:0,88,1728 0/1:69,29:98:39.30:39,0,2093 0/0:90,30:120:99:0,148,2821 0/1:89,40:129:59.30:59,0,2732 0/0:50,26:76:15.18:0,15,1455 0/0:101,72:173:99:0,147,3309 0/0:77,36:114:99:0,193,2492 0/0:85,38:124:99:0,111,2648 0/0:75,29:104:99:0,186,2383 0/0:51,21:72:99:0,147,1734 0/0:57,26:83:99:0,109,1718 0/0:44,21:66:60.53:0,61,1403 0/0:53,22:75:99:0,109,1789 0/0:37,13:51:82.62:0,83,1213 0/0:81,20:101:99:0,235,2719 0/0:56,24:80:99:0,156,1806 0/0:41,21:63:57.13:0,57,1220 0/0:45,17:62:99:0,105,1448 0/0:52,32:86:20.41:0,20,1567 0/0:55,17:72:15.54:0,16,1571 0/0:57,27:84:98.47:0,98,1845 0/0:65,28:93:99:0,157,2061 0/0:53,18:71:99:0,124,1698 0/0:61,27:88:99:0,152,1998 0/0:55,29:84:29.35:0,29,1739 13 42273314 . AGTCCACAAAG A 200.26 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.045;DP=3220;DS;FS=187.196;HRun=0;HaplotypeScore=616.7869;InbreedingCoeff=-0.0120;MQ=58.96;MQ0=0;MQRankSum=-0.836;QD=2.02;ReadPosRankSum=-10.374 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,147,7015 0/0:54,0:54:99:0,154,7542 0/0:53,0:53:99:0,150,7066 0/0:126,0:126:99:0,329,16107 0/0:126,0:126:99:0,355,16726 0/0:112,0:107:99:0,292,14560 0/0:101,0:102:99:0,295,14557 0/0:89,0:86:99:0,262,12918 0/0:68,0:68:99:0,176,8688 0/0:49,0:49:99:0,141,6834 0/0:57,0:57:99:0,160,7623 0/0:59,0:59:99:0,165,7399 0/0:49,0:49:99:0,141,6848 0/0:58,0:58:99:0,138,7610 0/0:189,0:189:99:0,493,25590 0/0:45,0:45:99:0,126,5628 0/0:54,0:54:99:0,153,6976 0/0:63,0:63:99:0,172,8013 0/1:77,22:99:99:256,0,10022 0/0:115,0:115:99:0,331,16005 0/0:82,0:82:99:0,163,10324 0/0:73,0:73:99:0,211,9722 0/0:145,0:144:99:0,378,18656 0/0:91,0:90:99:0,259,12196 0/0:104,0:104:99:0,310,15337 0/0:82,0:82:99:0,235,10935 0/0:57,0:57:99:0,136,6901 0/0:66,0:66:99:0,145,8358 0/0:55,0:55:99:0,150,7068 0/0:62,0:62:99:0,175,8440 0/0:46,0:46:99:0,115,6054 0/0:84,0:84:99:0,247,11569 0/0:58,0:58:99:0,166,7604 0/0:53,0:53:99:0,142,6329 0/0:59,0:59:99:0,129,7493 0/0:80,0:80:99:0,161,10904 0/0:63,0:63:99:0,156,8510 0/0:76,0:76:99:0,217,10325 0/0:67,0:67:99:0,193,9347 0/0:67,0:67:99:0,193,8713 0/0:79,0:79:99:0,226,10523 0/0:53,0:53:99:0,157,7185 13 42273324 . G A 4951.15 . AC=31;AF=0.369;AN=84;BaseQRankSum=-29.797;DP=4263;DS;Dels=0.01;FS=2808.116;HRun=3;HaplotypeScore=9.9253;InbreedingCoeff=-0.5853;MQ=59.06;MQ0=0;MQRankSum=-2.494;QD=1.61;ReadPosRankSum=-24.448 GT:AD:DP:GQ:PL 0/1:48,24:72:68.31:68,0,1263 0/1:58,19:77:55.31:55,0,1436 0/1:50,21:71:99:133,0,1387 0/1:113,51:165:99:122,0,3036 0/1:116,49:165:99:184,0,3363 0/1:107,42:149:16.61:17,0,3096 0/0:109,30:140:27.04:0,27,3108 0/0:100,28:128:99:0,102,2692 0/1:60,24:84:99:144,0,1594 0/1:51,19:70:99:121,0,1535 0/1:54,25:79:99:175,0,1456 0/1:59,31:90:99:205,0,1526 0/0:47,8:56:29.71:0,30,1421 0/0:60,17:77:14.92:0,15,1427 0/1:169,81:250:99:333,0,4764 0/1:33,20:53:99:132,0,777 0/1:57,28:85:99:186,0,1452 0/1:59,26:85:99:262,0,1515 0/0:76,5:81:88.31:0,88,2214 0/1:111,32:143:23.04:23,0,2696 0/1:66,36:103:99:309,0,1833 0/0:64,19:83:50.41:0,50,1642 0/1:137,74:211:99:380,0,3801 0/0:91,39:130:21.78:0,22,2671 0/0:117,40:158:62.41:0,62,3595 0/0:82,23:105:54.99:0,55,2416 0/1:44,17:61:85.79:86,0,1078 0/1:59,23:82:99:118,0,1584 0/1:47,24:71:99:201,0,1360 0/1:60,30:90:99:229,0,1643 0/1:51,11:62:95.83:96,0,1322 0/0:97,19:116:55.52:0,56,2370 0/1:53,24:77:33.79:34,0,1288 0/1:45,20:65:60.42:60,0,1152 0/1:54,18:72:78.78:79,0,1426 0/1:78,31:109:99:136,0,2242 0/1:67,39:106:99:262,0,1925 0/0:73,11:84:99:0,126,2059 0/1:64,24:88:99:156,0,1837 0/1:61,21:82:99:177,0,1591 0/1:66,26:92:99:254,0,1722 0/1:48,26:74:99:217,0,1249 13 42385446 . T C 3872.22 . AC=3;AF=0.036;AN=84;BaseQRankSum=-11.879;DP=4509;DS;Dels=0.00;FS=4.201;HRun=1;HaplotypeScore=2.1645;InbreedingCoeff=-0.0370;MQ=59.49;MQ0=0;MQRankSum=1.688;QD=10.85;ReadPosRankSum=-1.629 GT:AD:DP:GQ:PL 0/0:111,0:112:99:0,298,3673 0/0:88,0:88:99:0,238,2946 0/0:81,0:81:99:0,232,2879 0/0:184,0:184:99:0,479,6094 0/0:188,0:188:99:0,469,6084 0/0:134,0:134:99:0,355,4615 0/0:155,0:155:99:0,400,5182 0/0:131,0:131:99:0,352,4509 0/0:85,0:85:99:0,220,2748 0/1:44,37:81:99:853,0,1258 0/0:87,0:87:99:0,232,2922 0/0:93,0:93:99:0,265,3257 0/0:54,0:56:99:0,138,1734 0/0:85,0:85:99:0,229,2874 0/0:221,1:222:99:0,584,7149 0/0:59,0:59:99:0,162,1989 0/0:83,0:83:99:0,229,2842 0/0:95,0:95:99:0,271,3330 0/0:128,0:128:99:0,337,4197 0/0:141,1:142:99:0,324,4483 0/1:76,65:141:99:1487,0,2137 0/0:90,0:90:99:0,244,2976 0/0:185,0:185:99:0,476,6115 0/0:124,0:124:99:0,316,4100 0/0:144,0:144:99:0,352,4586 0/0:120,0:120:99:0,325,4161 0/0:75,0:75:99:0,202,2506 0/0:67,0:67:99:0,184,2268 0/0:68,0:68:99:0,190,2349 0/0:73,0:73:99:0,205,2508 0/0:84,0:85:99:0,235,2907 0/1:73,62:135:99:1533,0,1986 0/0:94,0:94:99:0,247,3046 0/0:95,0:95:99:0,265,3321 0/0:70,0:71:99:0,199,2452 0/0:100,0:100:99:0,271,3394 0/0:117,0:117:99:0,298,3739 0/0:81,0:81:99:0,223,2792 0/0:78,0:78:99:0,214,2652 0/0:101,0:101:99:0,289,3571 0/0:75,0:75:99:0,211,2619 0/0:100,0:100:99:0,280,3482 13 42703765 . C T 846.41 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.390;DP=1380;Dels=0.00;FS=1.817;HRun=2;HaplotypeScore=0.4487;InbreedingCoeff=-0.0244;MQ=59.28;MQ0=0;MQRankSum=-1.439;QD=13.88;ReadPosRankSum=-1.766 GT:AD:DP:GQ:PL 0/1:16,15:31:99:418,0,496 0/1:13,17:30:99:491,0,403 0/0:25,0:25:72.23:0,72,919 0/0:35,0:35:81.26:0,81,1117 0/0:47,0:47:99:0,138,1912 0/0:33,0:33:93.30:0,93,1266 0/0:25,0:25:69.23:0,69,960 0/0:26,0:26:75.25:0,75,1044 0/0:28,0:28:72.23:0,72,955 0/0:37,0:37:99:0,108,1376 0/0:25,0:25:69.22:0,69,886 0/0:27,0:27:78.25:0,78,1006 0/0:32,0:32:84.27:0,84,1095 0/0:27,0:27:81.26:0,81,1030 0/0:122,0:122:99:0,292,3851 0/0:17,0:17:51.16:0,51,649 0/0:40,0:40:99:0,114,1463 0/0:32,0:32:90.29:0,90,1152 0/0:39,0:39:99:0,102,1317 0/0:45,1:46:99:0,129,1657 0/0:50,0:50:99:0,138,1780 0/0:21,0:21:57.19:0,57,746 0/0:46,0:46:99:0,120,1652 0/0:39,0:39:99:0,105,1451 0/0:43,0:43:99:0,117,1643 0/0:36,0:36:93.31:0,93,1301 0/0:14,0:14:39.12:0,39,498 0/0:25,0:25:69.21:0,69,864 0/0:26,0:26:75.24:0,75,967 0/0:32,0:32:93.30:0,93,1195 0/0:28,0:28:78.25:0,78,1008 0/0:38,0:38:99:0,108,1394 0/0:27,0:27:78.25:0,78,1001 0/0:26,0:26:69.22:0,69,894 0/0:27,0:27:75.24:0,75,968 0/0:26,0:26:69.21:0,69,889 0/0:30,0:30:78.25:0,78,1013 0/0:21,0:21:60.19:0,60,767 0/0:26,0:26:78.25:0,78,987 0/0:26,0:26:72.23:0,72,919 0/0:22,0:22:63.20:0,63,799 0/0:27,0:27:78.25:0,78,993 13 42733400 . A T 137.23 . AC=8;AF=0.095;AN=84;BaseQRankSum=3.224;DP=871;Dels=0.02;FS=14.081;HRun=19;HaplotypeScore=0.8410;InbreedingCoeff=-0.1181;MQ=57.92;MQ0=0;MQRankSum=2.518;QD=0.94;ReadPosRankSum=-2.060 GT:AD:DP:GQ:PL 0/0:17,0:17:51.13:0,51,573 0/0:20,0:20:54.15:0,54,609 0/1:15,3:18:21.89:22,0,414 0/0:20,0:20:60.16:0,60,664 0/0:15,0:15:42.11:0,42,463 0/0:15,0:15:42.12:0,42,486 0/0:23,0:23:57.17:0,57,670 0/0:23,1:24:66.17:0,66,746 0/0:18,0:18:51.13:0,51,574 0/0:10,0:10:30.08:0,30,329 0/1:17,2:19:15.45:15,0,493 0/1:14,3:17:25.35:25,0,405 0/1:16,2:18:5.52:6,0,493 0/1:18,4:22:85.94:86,0,484 0/0:62,2:65:99:0,108,1909 0/0:9,1:10:27.08:0,27,314 0/0:19,1:20:19.37:0,19,587 0/0:16,0:16:45.13:0,45,527 0/0:31,0:31:84.25:0,84,991 0/0:28,0:28:78.19:0,78,875 0/0:33,0:33:84.24:0,84,974 0/0:10,0:10:30.08:0,30,339 0/0:19,1:20:57.13:0,57,618 0/0:27,4:32:72.18:0,72,822 0/0:23,2:26:60.16:0,60,677 0/0:24,0:24:66.16:0,66,740 0/1:11,3:14:33.38:33,0,309 0/1:12,2:14:24.48:24,0,375 0/0:13,1:14:36.10:0,36,415 0/0:21,0:21:63.17:0,63,710 0/0:16,0:16:48.14:0,48,553 0/0:22,0:22:60.18:0,60,707 0/0:12,3:15:1.34:4,0,286 0/0:16,0:16:48.14:0,48,560 0/1:21,3:24:39.17:39,0,608 0/0:21,1:22:26.20:0,26,643 0/0:26,1:27:72.19:0,72,826 0/0:17,0:17:48.13:0,48,532 0/0:15,1:16:18.51:0,19,479 0/0:16,0:16:48.13:0,48,539 0/0:16,2:19:14.51:0,15,438 0/0:12,1:13:2.98:0,3,376 13 42733403 . G T 39.74 . 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G T 19.22 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.429;DP=1134;Dels=0.00;FS=4.205;HRun=1;HaplotypeScore=0.8247;InbreedingCoeff=-0.0121;MQ=58.06;MQ0=0;MQRankSum=0.665;QD=0.46;ReadPosRankSum=-5.657 GT:AD:DP:GQ:PL 0/0:24,0:24:72.22:0,72,893 0/0:25,0:25:75.23:0,75,933 0/0:23,0:23:69.22:0,69,859 0/0:30,0:30:90.29:0,90,1204 0/0:24,0:24:72.23:0,72,969 0/0:24,0:24:69.22:0,69,914 0/0:31,0:31:87.28:0,87,1160 0/0:29,0:29:84.27:0,84,1110 0/0:24,0:24:72.22:0,72,890 0/0:16,0:16:48.15:0,48,607 0/0:25,0:25:72.23:0,72,899 0/0:20,0:20:57.18:0,57,706 0/0:22,1:23:36.51:0,37,722 0/0:21,0:21:57.18:0,57,728 0/0:89,0:89:99:0,244,3084 0/0:15,0:15:42.13:0,42,525 0/0:24,1:25:39.11:0,39,876 0/0:23,0:23:66.21:0,66,836 0/0:37,0:37:99:0,108,1360 0/1:36,6:42:65.37:65,0,1076 0/0:42,0:42:99:0,114,1457 0/0:15,0:15:45.14:0,45,561 0/0:29,0:29:84.28:0,84,1138 0/0:37,0:37:90.29:0,90,1211 0/0:30,0:30:87.28:0,87,1155 0/0:34,0:34:93.29:0,93,1229 0/0:14,0:14:36.11:0,36,446 0/0:19,2:21:30.56:0,31,659 0/0:22,0:22:63.17:0,63,748 0/0:25,0:25:75.24:0,75,939 0/0:25,0:25:75.24:0,75,948 0/0:31,1:32:53.31:0,53,1057 0/0:18,0:18:48.15:0,48,607 0/0:25,0:25:75.23:0,75,927 0/0:25,0:25:75.23:0,75,926 0/0:24,1:25:41.80:0,42,877 0/0:35,0:35:99:0,99,1208 0/0:24,0:24:69.22:0,69,867 0/0:22,1:23:39.57:0,40,787 0/0:19,0:19:54.17:0,54,679 0/0:25,1:26:69.21:0,69,861 0/0:16,0:16:48.16:0,48,618 13 42882620 . C T 14595.65 . AC=12;AF=0.143;AN=84;BaseQRankSum=-9.386;DP=4517;DS;Dels=0.00;FS=3.633;HRun=0;HaplotypeScore=2.4689;InbreedingCoeff=-0.1667;MQ=59.54;MQ0=1;MQRankSum=-0.554;QD=13.00;ReadPosRankSum=0.687 GT:AD:DP:GQ:PL 0/0:92,0:92:99:0,253,3144 0/0:98,0:98:99:0,268,3312 0/0:72,0:72:99:0,199,2466 0/0:184,0:187:99:0,485,6399 0/0:167,0:168:99:0,436,5798 0/0:140,0:140:99:0,361,4758 0/0:129,0:129:99:0,325,4274 0/0:117,0:118:99:0,310,4076 0/0:82,0:82:99:0,217,2695 0/0:64,0:64:99:0,171,2111 0/0:71,0:72:99:0,202,2482 0/1:50,41:91:99:1194,0,1383 0/1:42,31:73:99:939,0,1095 0/0:105,0:105:99:0,283,3568 0/0:248,0:250:99:0,668,8250 0/1:37,26:63:99:789,0,1092 0/0:96,0:98:99:0,265,3269 0/0:85,2:88:99:0,181,2697 0/1:86,55:146:99:1599,0,2535 0/1:81,60:141:99:1695,0,2243 0/1:58,61:120:99:1855,0,1599 0/1:42,47:89:99:1249,0,1108 0/0:165,0:165:99:0,421,5584 0/0:131,0:131:99:0,352,4581 0/0:143,0:143:99:0,379,4990 0/0:120,0:120:99:0,307,4055 0/0:60,0:60:99:0,168,2050 0/0:95,0:96:99:0,268,3306 0/0:79,0:79:99:0,217,2782 0/0:74,0:74:99:0,199,2501 0/0:58,0:58:99:0,153,1915 0/0:200,0:202:99:0,518,6531 0/1:46,54:101:99:1425,0,1351 0/1:39,41:81:99:1253,0,1162 0/0:107,1:108:99:0,255,3456 0/1:41,34:75:99:1048,0,1176 0/0:140,1:144:99:0,339,4559 0/1:49,29:78:99:863,0,1447 0/1:40,24:65:99:687,0,1221 0/0:101,0:102:99:0,262,3321 0/0:71,0:71:99:0,199,2475 0/0:77,0:78:99:0,217,2714 13 43462422 . A T 46229.52 . AC=30;AF=0.357;AN=84;BaseQRankSum=12.340;DP=4216;DS;Dels=0.00;FS=16.820;HRun=2;HaplotypeScore=1.1173;InbreedingCoeff=-0.0370;MQ=58.64;MQ0=0;MQRankSum=7.086;QD=17.06;ReadPosRankSum=0.277 GT:AD:DP:GQ:PL 0/0:73,0:73:99:0,202,2442 0/1:29,31:60:99:903,0,844 1/1:0,66:66:99:2262,181,0 1/1:0,158:158:99:5419,427,0 0/1:77,83:160:99:2421,0,2156 0/1:92,78:170:99:2323,0,2606 0/0:170,0:170:99:0,469,5875 0/1:82,75:157:99:2103,0,2338 0/0:70,0:70:99:0,208,2419 0/0:68,0:68:99:0,199,2307 0/0:83,0:83:99:0,229,2801 0/0:98,0:99:99:0,271,3275 0/0:73,0:73:99:0,199,2404 0/0:102,0:102:99:0,286,3481 0/1:125,87:212:99:2203,0,3462 0/0:64,0:64:99:0,175,2124 1/1:1,85:86:99:2814,202,0 1/1:0,68:68:99:2345,193,0 0/1:55,40:96:99:1142,0,1539 0/0:120,0:120:99:0,343,4143 0/1:62,48:110:99:1271,0,1816 0/1:35,40:75:99:1136,0,882 0/1:99,93:192:99:2842,0,2778 0/0:152,0:153:99:0,418,5194 0/1:79,82:161:99:2466,0,2341 0/1:81,76:157:99:2203,0,2163 0/1:31,33:64:99:983,0,866 0/1:46,43:89:99:1253,0,1280 0/0:62,0:62:99:0,169,2071 0/0:65,0:65:99:0,187,2264 0/1:38,22:60:99:586,0,1151 0/1:47,38:85:99:1125,0,1392 0/0:66,0:66:99:0,184,2149 0/1:49,35:84:99:999,0,1390 0/1:31,37:68:99:1124,0,866 0/0:72,1:73:99:0,165,2400 0/1:43,37:82:99:1003,0,1294 0/0:82,0:82:99:0,238,2828 1/1:1,85:86:99:2889,207,0 0/0:83,0:83:99:0,241,2927 0/1:41,34:75:99:903,0,1179 0/1:39,50:89:99:1510,0,1072 13 43462434 . T TTCAGG 11546.75 . AC=4;AF=0.048;AN=84;BaseQRankSum=-16.329;DP=3669;DS;FS=0.634;HRun=0;HaplotypeScore=500.9872;InbreedingCoeff=-0.0500;MQ=58.53;MQ0=0;MQRankSum=-16.150;QD=35.31;ReadPosRankSum=0.025 GT:AD:DP:GQ:PL 0/0:67,0:66:99:0,193,3907 0/0:56,0:56:99:0,147,2920 0/0:63,0:63:99:0,178,3555 0/0:131,0:131:99:0,352,7094 0/1:88,57:144:99:5562,0,3599 0/0:139,0:136:99:0,355,7116 0/0:142,0:136:99:0,379,7585 0/0:135,0:127:99:0,370,7396 0/1:40,24:67:99:2796,0,1355 0/1:44,15:60:99:1384,0,2065 0/0:79,0:79:99:0,214,4342 0/0:78,0:78:99:0,217,4370 0/0:68,0:68:99:0,172,3397 0/0:88,0:88:99:0,238,4764 0/0:175,0:175:99:0,454,9093 0/0:55,0:55:99:0,144,2963 0/0:81,0:81:99:0,223,4477 0/0:60,0:60:99:0,169,3362 0/0:85,0:85:99:0,213,4190 0/0:112,0:110:99:0,301,6085 0/0:97,0:97:99:0,268,5403 0/0:65,0:64:99:0,181,3658 0/0:154,0:154:99:0,424,8582 0/0:127,0:122:99:0,349,7059 0/0:146,0:143:99:0,400,8147 0/0:124,0:117:99:0,340,6905 0/0:58,0:58:99:0,156,3076 0/0:77,0:77:99:0,208,4131 0/0:61,0:61:99:0,166,3263 0/0:69,0:69:99:0,193,3899 0/0:48,0:48:99:0,138,2828 0/0:80,0:80:99:0,220,4413 0/1:36,16:55:99:1805,0,1233 0/0:75,0:75:99:0,205,4160 0/0:56,0:55:99:0,141,2848 0/0:66,0:66:99:0,172,3444 0/0:66,0:66:99:0,174,3549 0/0:70,0:70:99:0,199,3995 0/0:78,0:78:99:0,208,4141 0/0:75,0:75:99:0,214,4297 0/0:66,0:66:99:0,181,3670 0/0:70,0:70:99:0,190,3791 13 43462478 . G A 149.12 . AC=7;AF=0.083;AN=84;BaseQRankSum=-19.944;DP=2924;Dels=0.00;FS=534.692;HRun=2;HaplotypeScore=1.5941;InbreedingCoeff=-0.1181;MQ=58.88;MQ0=0;MQRankSum=-1.665;QD=0.38;ReadPosRankSum=-11.869 GT:AD:DP:GQ:PL 0/1:45,14:59:17.21:17,0,1205 0/0:37,13:50:2.07:2,0,1042 0/0:54,9:63:18.27:0,18,1590 0/0:80,24:104:99:0,149,2445 0/0:94,24:118:99:0,171,2897 0/0:79,34:113:99:0,123,2329 0/0:89,19:108:99:0,112,2649 0/0:71,19:90:99:0,144,1980 0/0:36,9:45:3.01:0,0,1094 0/0:39,10:49:40.95:0,41,1168 0/1:41,14:55:60.77:61,0,1186 0/0:41,14:55:23.51:0,24,1153 0/0:36,6:42:55.61:0,56,992 0/0:49,19:68:49.46:0,49,1440 0/0:115,30:146:99:0,194,3512 0/1:41,13:54:62.38:62,0,1001 0/0:51,4:55:99:0,132,1619 0/0:38,11:49:77.85:0,78,1266 0/0:58,8:66:82.79:0,83,1895 0/0:71,7:78:99:0,149,1996 0/0:56,7:63:36.66:0,37,1722 0/0:49,14:63:80.10:0,80,1515 0/0:92,40:132:68.91:0,69,2821 0/0:82,22:104:99:0,112,2232 0/0:70,10:80:99:0,145,2178 0/0:66,13:79:99:0,126,2081 0/1:46,18:64:35.45:35,0,1271 0/0:49,13:63:95.89:0,96,1462 0/1:40,12:52:14.34:14,0,1083 0/0:42,9:51:80.88:0,81,1282 0/0:36,8:44:14.62:0,15,1009 0/0:66,17:83:99:0,105,2045 0/0:52,9:61:99:0,123,1495 0/0:49,12:61:1.72:0,2,1382 0/0:35,10:45:2.63:0,3,991 0/0:45,15:61:99:0,123,1496 0/0:52,13:65:36.04:0,36,1586 0/1:42,11:53:26.52:27,0,1223 0/1:43,16:59:42.12:42,0,905 0/0:48,14:62:70.84:0,71,1265 0/0:43,12:55:66.99:0,67,1330 0/0:43,10:53:83:0,83,1402 13 43462607 . G A 12707.55 . 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G A 12480.76 . 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G A 14353.76 . 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C T 2783.74 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.713;DP=6572;DS;Dels=0.00;FS=3.897;HRun=0;HaplotypeScore=1.9632;InbreedingCoeff=-0.0120;MQ=59.60;MQ0=0;MQRankSum=-0.349;QD=11.80;ReadPosRankSum=0.927 GT:AD:DP:GQ:PL 0/0:127,0:127:99:0,352,4210 0/0:111,0:111:99:0,307,3677 0/0:105,0:105:99:0,295,3562 0/0:250,0:250:99:0,671,8684 0/0:249,0:249:99:0,677,8965 0/0:250,0:250:99:0,677,8977 0/0:248,1:250:99:0,649,8881 0/1:131,105:236:99:2830,0,4011 0/0:114,0:114:99:0,310,3768 0/0:119,0:119:99:0,319,3853 0/0:106,0:106:99:0,283,3401 0/0:128,0:128:99:0,343,4126 0/0:106,0:106:99:0,274,3290 0/0:131,0:131:99:0,352,4262 0/0:249,0:249:99:0,659,7986 0/0:96,0:96:99:0,268,3162 0/0:128,0:128:99:0,349,4220 0/0:123,0:123:99:0,337,4020 0/0:200,0:201:99:0,514,6177 0/0:188,0:188:99:0,502,6065 0/0:221,0:221:99:0,557,6858 0/0:113,0:113:99:0,316,3773 0/0:250,0:250:99:0,668,8788 0/0:248,0:249:99:0,659,8662 0/0:250,0:250:99:0,659,8737 0/0:248,0:248:99:0,656,8688 0/0:101,0:101:99:0,292,3425 0/0:128,0:128:99:0,352,4203 0/0:103,0:103:99:0,286,3418 0/0:102,0:102:99:0,289,3424 0/0:115,0:115:99:0,322,3883 0/0:196,0:196:99:0,509,6275 0/0:112,0:112:99:0,301,3609 0/0:120,0:120:99:0,328,3892 0/0:114,0:114:99:0,319,3810 0/0:111,0:111:99:0,295,3576 0/0:186,0:186:99:0,481,5811 0/0:138,0:138:99:0,361,4382 0/0:123,0:123:99:0,343,4087 0/0:125,1:126:99:0,309,4067 0/0:106,0:107:99:0,310,3656 0/0:91,0:91:99:0,262,3171 13 45515395 . G A 1954.38 . AC=4;AF=0.048;AN=84;BaseQRankSum=-11.463;DP=2326;Dels=0.00;FS=8.327;HRun=1;HaplotypeScore=0.6727;InbreedingCoeff=-0.0500;MQ=56.35;MQ0=4;MQRankSum=5.427;QD=12.14;ReadPosRankSum=0.358 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,141,1799 0/0:45,0:45:99:0,129,1600 0/0:36,0:36:99:0,105,1336 0/0:102,0:102:99:0,262,3550 0/0:87,0:88:99:0,247,3368 0/0:90,0:90:99:0,247,3348 0/0:66,0:66:99:0,187,2529 0/0:76,0:76:99:0,214,2854 0/0:33,0:33:90.29:0,90,1178 0/0:49,0:49:99:0,135,1626 0/0:45,0:45:99:0,117,1504 0/0:50,0:50:99:0,135,1740 0/0:41,0:41:99:0,108,1364 0/0:40,0:40:99:0,114,1445 0/0:151,0:151:99:0,394,5050 0/0:32,0:32:87.27:0,87,1094 0/0:55,0:55:99:0,147,1858 0/0:42,0:42:99:0,123,1535 0/0:65,0:65:99:0,169,2111 0/0:60,0:60:99:0,166,2098 0/0:67,0:68:99:0,175,2195 0/1:16,18:34:99:541,0,478 0/0:101,0:101:99:0,277,3757 0/0:78,0:79:99:0,211,2858 0/0:78,0:78:99:0,211,2872 0/0:76,0:76:99:0,223,3034 0/1:17,16:33:99:429,0,498 0/1:33,24:57:99:685,0,916 0/0:51,0:51:99:0,138,1738 0/0:35,0:35:93.29:0,93,1178 0/0:36,0:36:99:0,108,1318 0/0:51,0:51:99:0,135,1735 0/1:22,15:37:99:386,0,640 0/0:43,0:43:99:0,126,1551 0/0:37,0:37:99:0,99,1268 0/0:50,0:51:99:0,144,1792 0/0:53,0:54:99:0,147,1841 0/0:44,0:44:99:0,117,1468 0/0:32,0:32:93.29:0,93,1175 0/0:42,0:42:99:0,126,1559 0/0:30,0:30:90.27:0,90,1114 0/0:39,0:39:99:0,114,1429 13 45517599 . T G 70.42 . AC=2;AF=0.024;AN=84;BaseQRankSum=-34.207;DP=5025;DS;Dels=0.00;FS=185.975;HRun=2;HaplotypeScore=1.8732;InbreedingCoeff=-0.0265;MQ=57.88;MQ0=1;MQRankSum=1.396;QD=0.29;ReadPosRankSum=-5.004 GT:AD:DP:GQ:PL 0/0:72,31:103:99:0,102,1898 0/0:72,23:95:99:0,124,1966 0/0:49,17:67:99:0,120,1523 0/0:136,76:212:99:0,207,3737 0/0:140,54:194:99:0,349,4058 0/0:129,53:184:99:0,322,3668 0/0:125,32:157:99:0,301,3457 0/0:118,42:160:99:0,289,3335 0/0:71,31:103:99:0,108,1901 0/0:47,28:75:99:0,101,1348 0/0:69,41:110:99:0,114,2037 0/0:77,34:112:99:0,206,2288 0/0:77,29:106:99:0,154,2261 0/0:68,28:96:99:0,120,1992 0/0:168,75:243:99:0,393,4849 0/0:60,25:85:98.08:0,98,1762 0/0:76,36:112:99:0,185,2262 0/0:75,26:101:99:0,171,2140 0/1:83,45:129:73.07:73,0,2234 0/0:86,21:107:99:0,220,2522 0/0:59,30:90:7.29:0,7,1515 0/0:73,14:87:99:0,198,2185 0/0:169,52:221:99:0,383,4899 0/0:124,58:182:99:0,261,3298 0/0:139,46:189:99:0,337,3787 0/0:131,50:182:99:0,244,3397 0/0:56,16:72:99:0,144,1695 0/0:67,27:94:99:0,165,1988 0/0:64,16:82:99:0,168,1911 0/0:67,24:91:99:0,162,2017 0/0:43,26:69:20.81:0,21,1072 0/0:112,18:130:99:0,283,3252 0/0:51,26:77:99:0,135,1539 0/0:71,27:99:99:0,127,2137 0/0:67,31:98:99:0,161,2008 0/0:72,26:98:99:0,186,2140 0/1:67,47:114:59.70:60,0,1729 0/0:79,34:113:99:0,188,2292 0/0:71,27:98:99:0,163,2057 0/0:68,31:101:99:0,156,2094 0/0:60,15:76:99:0,135,1716 0/0:81,30:111:99:0,182,2217 13 45589616 . C G 3029.11 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.028;DP=3655;Dels=0.00;FS=2.639;HRun=0;HaplotypeScore=0.9027;InbreedingCoeff=-0.0244;MQ=59.48;MQ0=0;MQRankSum=0.957;QD=12.67;ReadPosRankSum=0.368 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,184,2331 0/0:84,0:84:99:0,232,2965 0/0:71,0:71:99:0,199,2546 0/0:147,0:147:99:0,382,5195 0/0:122,0:122:99:0,337,4598 0/1:72,66:138:99:1905,0,2068 0/0:110,0:110:99:0,301,4129 0/1:58,43:101:99:1187,0,1768 0/0:70,0:70:99:0,193,2496 0/0:49,0:49:99:0,141,1807 0/0:79,0:79:99:0,214,2753 0/0:62,0:62:99:0,178,2281 0/0:58,0:58:99:0,160,2056 0/0:78,0:78:99:0,214,2728 0/0:219,0:219:99:0,578,7493 0/0:62,0:62:99:0,175,2213 0/0:71,0:71:99:0,205,2592 0/0:82,0:82:99:0,235,3011 0/0:89,0:89:99:0,241,3105 0/0:86,0:86:99:0,232,2968 0/0:94,0:94:99:0,244,3176 0/0:62,0:62:99:0,169,2171 0/0:160,0:160:99:0,442,6090 0/0:124,0:124:99:0,322,4414 0/0:131,0:131:99:0,361,4963 0/0:109,0:109:99:0,301,4095 0/0:51,0:51:99:0,144,1850 0/0:62,0:62:99:0,169,2155 0/0:62,0:62:99:0,172,2214 0/0:54,0:54:99:0,150,1962 0/0:61,0:61:99:0,172,2185 0/0:105,0:106:99:0,274,3576 0/0:58,0:58:99:0,156,2003 0/0:56,0:56:99:0,157,2023 0/0:79,0:79:99:0,214,2765 0/0:72,0:72:99:0,208,2676 0/0:108,0:108:99:0,277,3562 0/0:70,0:70:99:0,181,2323 0/0:73,0:73:99:0,208,2643 0/0:82,0:82:99:0,238,3044 0/0:56,0:57:99:0,153,1973 0/0:82,0:82:99:0,229,2935 13 45589633 . G T 4027 . AC=2;AF=0.024;AN=84;BaseQRankSum=-15.972;DP=3879;Dels=0.00;FS=21.847;HRun=3;HaplotypeScore=1.1476;InbreedingCoeff=-0.0244;MQ=59.43;MQ0=0;MQRankSum=0.074;QD=12.82;ReadPosRankSum=-3.415 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,169,2142 0/0:80,0:80:99:0,226,2842 0/0:76,0:76:99:0,220,2782 0/0:163,0:163:99:0,427,5769 0/0:149,0:149:99:0,421,5760 0/0:149,0:149:99:0,397,5438 0/0:123,0:123:99:0,331,4564 0/0:119,0:119:99:0,328,4453 0/0:73,0:73:99:0,211,2694 0/0:57,0:57:99:0,163,2050 0/0:88,0:88:99:0,244,3109 0/0:60,1:61:99:0,172,2153 0/0:57,0:57:99:0,153,1960 0/0:79,0:79:99:0,211,2664 0/1:128,118:246:99:3208,0,3531 0/0:68,0:68:99:0,187,2343 0/1:40,28:68:99:819,0,1313 0/0:84,0:84:99:0,247,3109 0/0:93,0:93:99:0,253,3265 0/0:86,0:86:99:0,226,2919 0/0:91,0:91:99:0,238,3044 0/0:55,0:55:99:0,166,2094 0/0:164,0:164:99:0,457,6301 0/0:120,0:120:99:0,334,4522 0/0:152,0:152:99:0,415,5673 0/0:118,0:118:99:0,331,4499 0/0:59,0:59:99:0,166,2101 0/0:69,0:69:99:0,193,2467 0/0:68,0:68:99:0,190,2393 0/0:60,0:60:99:0,163,2106 0/0:71,0:71:99:0,196,2475 0/0:107,0:107:99:0,283,3641 0/0:70,0:70:99:0,196,2504 0/0:67,0:67:99:0,190,2411 0/0:81,0:82:99:0,223,2836 0/0:70,0:70:99:0,199,2522 0/0:96,2:98:99:0,259,3298 0/0:77,0:77:99:0,217,2755 0/0:69,0:69:99:0,199,2514 0/0:85,0:85:99:0,235,3012 0/0:68,0:68:99:0,193,2475 0/0:81,0:81:99:0,238,3020 13 45694851 . G A 110.31 . AC=10;AF=0.128;AN=78;BaseQRankSum=-0.449;DP=149;Dels=0.01;FS=109.111;HRun=1;HaplotypeScore=0.3419;InbreedingCoeff=-0.1134;MQ=58.45;MQ0=0;MQRankSum=-0.304;QD=2.76;ReadPosRankSum=-4.227 GT:AD:DP:GQ:PL 0/0:3,2:5:9.03:0,9,106 0/0:1,0:1:3.01:0,3,38 0/0:3,1:4:9.02:0,9,100 0/0:5,1:6:15.05:0,15,196 0/0:4,1:5:12.04:0,12,161 0/0:1,0:1:3.01:0,3,32 0/0:1,0:1:3.01:0,3,40 0/1:3,1:4:25.76:26,0,103 0/0:2,1:3:6.02:0,6,76 0/0:3,0:3:9.03:0,9,106 0/0:2,1:3:6.02:0,6,73 0/0:4,0:4:12.02:0,12,134 0/0:3,0:3:9.02:0,9,100 ./. 0/0:5,3:8:15.05:0,15,180 ./. 0/0:3,1:4:9.03:0,9,108 0/0:1,1:2:3.01:0,3,37 0/0:6,1:7:18.04:0,18,198 0/1:3,1:4:25.33:25,0,57 0/1:6,2:8:15.41:15,0,142 0/0:4,2:6:12.03:0,12,138 0/0:7,0:7:18.06:0,18,231 0/1:1,2:3:30.11:30,0,35 0/0:1,0:1:3.01:0,3,42 0/0:3,0:3:9.03:0,9,116 ./. 0/0:2,0:2:6.02:0,6,72 0/0:3,1:4:9.03:0,9,111 0/0:2,0:2:6.02:0,6,75 1/1:0,1:1:3.01:38,3,0 0/0:3,1:4:6.02:0,6,76 0/1:3,1:4:22.32:22,0,95 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.03:0,9,111 0/0:3,0:3:9.03:0,9,111 0/1:4,3:8:25.76:26,0,100 0/0:3,2:5:9.03:0,9,107 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.02:0,9,105 0/1:1,1:2:29.23:29,0,32 0/1:5,1:6:17.46:17,0,123 13 46104849 . C T 3053.08 . 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T C 11169.03 . AC=84;AF=1.000;AN=84;DP=314;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0451;InbreedingCoeff=-0.0154;MQ=58.85;MQ0=0;QD=35.57 GT:AD:DP:GQ:PL 1/1:0,3:3:9.03:107,9,0 1/1:0,5:5:15.04:182,15,0 1/1:0,4:4:9.03:123,9,0 1/1:0,11:11:30.09:385,30,0 1/1:0,4:4:9.03:124,9,0 1/1:0,9:9:21.07:285,21,0 1/1:0,6:6:18.06:245,18,0 1/1:0,13:13:36.12:474,36,0 1/1:0,3:3:9.03:108,9,0 1/1:0,9:9:24.08:308,24,0 1/1:0,8:8:21.06:257,21,0 1/1:0,8:8:24.07:283,24,0 1/1:0,3:3:9.03:116,9,0 1/1:0,7:7:18.05:220,18,0 1/1:0,29:29:78.24:976,78,0 1/1:0,9:9:24.07:301,24,0 1/1:0,6:6:18.06:228,18,0 1/1:0,6:6:18.06:228,18,0 1/1:0,11:11:30.07:375,30,0 1/1:0,7:7:15.05:204,15,0 1/1:0,4:4:12.04:152,12,0 1/1:0,8:8:21.07:274,21,0 1/1:0,10:10:30.10:411,30,0 1/1:0,4:4:12.02:148,12,0 1/1:0,16:16:45.14:581,45,0 1/1:0,5:5:12.04:162,12,0 1/1:0,9:9:27.09:343,27,0 1/1:0,10:10:24.08:314,24,0 1/1:0,6:6:15.05:198,15,0 1/1:0,5:5:15.05:191,15,0 1/1:0,8:8:24.08:306,24,0 1/1:0,10:10:27.09:358,27,0 1/1:0,5:5:15.05:190,15,0 1/1:0,6:6:18.05:222,18,0 1/1:0,7:7:21.07:268,21,0 1/1:0,6:6:18.06:230,18,0 1/1:0,10:10:30.10:381,30,0 1/1:0,7:7:21.07:262,21,0 1/1:0,3:3:9.03:115,9,0 1/1:0,4:4:12.04:152,12,0 1/1:0,5:5:15.05:192,15,0 1/1:0,5:5:15.05:190,15,0 13 46108854 . G A 9139.16 . 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T C 1059.98 . 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A G 13310.06 . 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T C 61907.09 . AC=57;AF=0.679;AN=84;BaseQRankSum=-3.512;DP=3010;Dels=0.00;FS=5.823;HRun=1;HaplotypeScore=1.1257;InbreedingCoeff=-0.0372;MQ=59.44;MQ0=0;MQRankSum=0.861;QD=23.22;ReadPosRankSum=-2.084 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1930,156,0 0/1:40,34:76:99:865,0,1060 0/1:27,25:52:99:727,0,810 0/1:63,59:122:99:1512,0,1812 0/0:125,1:129:99:0,319,4183 0/1:51,62:114:99:1920,0,1533 1/1:0,109:109:99:3702,283,0 0/0:113,0:113:99:0,286,3699 0/1:24,23:48:99:649,0,650 1/1:0,50:50:99:1570,126,0 0/1:21,21:43:99:601,0,659 0/1:34,28:64:99:735,0,1047 1/1:2,31:33:22.08:975,22,0 0/1:25,29:54:99:832,0,710 1/1:0,174:176:99:5570,448,0 1/1:0,30:30:90.27:1081,90,0 0/1:24,30:54:99:871,0,673 1/1:0,62:62:99:2094,174,0 1/1:0,75:75:99:2427,202,0 0/1:38,63:101:99:1626,0,992 1/1:0,61:61:99:2159,178,0 0/1:29,38:67:99:967,0,623 1/1:0,135:137:99:4618,355,0 0/1:48,41:89:99:1130,0,1337 1/1:0,100:100:99:3208,250,0 0/1:42,47:89:99:1323,0,1079 1/1:0,37:37:99:1337,108,0 0/1:19,29:48:99:838,0,570 1/1:0,54:54:99:1738,144,0 0/0:60,0:60:99:0,153,1939 0/0:42,0:42:99:0,114,1370 0/1:44,47:91:99:1272,0,1308 0/1:45,32:78:99:759,0,1272 1/1:0,47:47:99:1568,129,0 0/1:21,20:41:99:517,0,589 0/1:39,27:66:99:667,0,1153 1/1:0,66:66:99:2127,177,0 1/1:0,63:63:99:2080,177,0 1/1:0,52:52:99:1749,144,0 1/1:0,65:65:99:2042,168,0 1/1:0,44:44:99:1409,117,0 0/1:28,25:53:99:709,0,785 13 46942945 . CAG C 659.90 . 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G C 1123.46 . 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A C 34686.86 . 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A G 59891.88 . 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C T 6635.89 . 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C T 2372.44 . 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G A 9840.04 . 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C T 900.88 . 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TA T 1540.12 . 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G A 3362.18 . 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A G 6384.38 . 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A G 2452.83 . 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G A 40231.49 . AC=69;AF=0.821;AN=84;BaseQRankSum=-16.992;DP=1573;Dels=0.00;FS=1.382;HRun=0;HaplotypeScore=0.4214;InbreedingCoeff=-0.2174;MQ=59.44;MQ0=0;MQRankSum=0.629;QD=25.58;ReadPosRankSum=-1.926 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1241,102,0 1/1:0,34:34:96.29:1139,96,0 1/1:0,28:28:81.24:961,81,0 1/1:1,48:49:99:1651,104,0 1/1:0,61:61:99:2140,178,0 0/1:25,21:46:99:575,0,812 1/1:0,41:41:99:1500,120,0 0/1:34,25:59:99:717,0,1100 1/1:0,37:37:99:1224,102,0 1/1:0,31:31:84.25:1013,84,0 1/1:0,31:31:84.26:1022,84,0 1/1:0,42:42:99:1438,120,0 1/1:0,42:42:99:1325,108,0 1/1:1,37:38:54.70:1085,55,0 0/1:42,50:93:99:1247,0,1145 0/1:17,12:29:99:298,0,534 1/1:0,21:21:63.18:733,63,0 1/1:0,31:31:84.26:1023,84,0 0/1:18,23:41:99:697,0,474 0/1:11,19:30:99:573,0,294 1/1:0,52:52:99:1723,141,0 1/1:1,21:22:57.17:687,57,0 0/1:32,24:56:99:666,0,1115 1/1:0,39:39:99:1348,111,0 1/1:0,46:46:99:1596,132,0 1/1:0,40:40:99:1374,114,0 0/1:11,6:17:99:160,0,353 0/1:23,18:41:99:528,0,673 1/1:0,25:25:69.21:828,69,0 1/1:0,36:36:90.28:1129,90,0 1/1:0,26:26:69.21:836,69,0 0/1:12,12:24:99:313,0,314 0/1:19,10:29:99:238,0,580 1/1:0,29:29:81.25:979,81,0 1/1:0,34:34:90.28:1110,90,0 1/1:0,42:42:99:1472,123,0 0/1:26,15:41:99:393,0,746 0/1:16,18:34:99:501,0,478 1/1:0,21:21:63.19:755,63,0 0/1:16,15:31:99:439,0,432 0/1:18,18:36:99:512,0,531 1/1:0,30:30:87.26:1041,87,0 13 50080847 . A G 52079.05 . AC=64;AF=0.762;AN=84;BaseQRankSum=23.547;DP=2039;Dels=0.00;FS=14.720;HRun=0;HaplotypeScore=0.5520;InbreedingCoeff=-0.1813;MQ=59.22;MQ0=0;MQRankSum=0.738;QD=25.88;ReadPosRankSum=-0.859 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1418,111,0 1/1:0,54:54:99:1918,156,0 1/1:0,31:31:93.29:1145,93,0 1/1:0,62:62:99:2370,181,0 1/1:0,61:61:99:2183,160,0 0/1:38,31:69:99:991,0,1156 1/1:0,65:65:99:2480,187,0 0/1:23,28:51:99:951,0,620 1/1:0,52:52:99:1873,150,0 1/1:1,33:34:55.03:1063,55,0 1/1:0,38:38:99:1341,108,0 1/1:0,44:44:99:1561,126,0 1/1:0,40:40:99:1355,108,0 1/1:0,42:42:99:1450,114,0 0/1:90,67:157:99:1739,0,2444 0/1:11,19:30:99:551,0,289 1/1:0,52:52:99:1816,147,0 1/1:0,37:37:99:1291,102,0 0/1:33,32:65:99:941,0,880 0/1:17,27:44:99:817,0,454 1/1:0,56:56:99:1921,150,0 0/1:14,16:30:99:475,0,364 0/1:33,33:66:99:1102,0,912 1/1:0,49:49:99:1809,135,0 1/1:0,65:65:99:2581,196,0 1/1:0,54:54:99:2082,157,0 0/0:27,0:27:75.23:0,75,900 0/1:19,24:43:99:731,0,544 0/1:16,18:34:99:535,0,440 1/1:0,47:47:99:1673,135,0 1/1:0,30:30:84.26:1041,84,0 0/1:33,25:58:99:614,0,921 0/1:24,20:44:99:611,0,637 0/1:15,16:31:99:469,0,426 0/1:23,21:44:99:576,0,651 1/1:0,58:58:99:2093,169,0 0/1:27,27:54:99:657,0,737 0/1:20,22:42:99:688,0,518 1/1:0,33:33:93.29:1164,93,0 0/1:26,12:38:99:337,0,714 0/1:15,17:32:99:525,0,434 1/1:0,32:32:93.29:1144,93,0 13 50140824 . T G 2419.88 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.239;DP=4701;DS;Dels=0.00;FS=4.271;HRun=0;HaplotypeScore=1.3013;InbreedingCoeff=-0.0120;MQ=59.51;MQ0=0;MQRankSum=-0.077;QD=13.08;ReadPosRankSum=-2.056 GT:AD:DP:GQ:PL 0/0:100,0:100:99:0,289,3607 0/0:100,0:100:99:0,265,3341 0/0:91,0:91:99:0,250,3157 0/0:179,0:179:99:0,491,6328 0/0:201,0:201:99:0,545,7143 0/0:191,0:191:99:0,530,7039 0/0:196,0:196:99:0,530,7001 0/0:182,0:182:99:0,479,6294 0/0:93,0:93:99:0,265,3333 0/0:78,0:78:99:0,217,2711 0/0:86,0:86:99:0,241,3018 0/0:79,0:79:99:0,226,2822 0/0:84,0:84:99:0,232,2899 0/0:74,0:74:99:0,220,2726 0/0:249,0:250:99:0,668,8498 0/0:74,0:74:99:0,211,2621 0/0:107,0:107:99:0,298,3773 0/0:76,0:76:99:0,220,2767 0/0:114,0:114:99:0,295,3765 0/0:86,0:86:99:0,244,3070 0/0:131,0:131:99:0,346,4408 0/0:65,0:65:99:0,181,2284 0/0:197,0:197:99:0,566,7328 0/0:169,0:169:99:0,451,5995 0/1:101,84:185:99:2466,0,3172 0/0:185,0:185:99:0,503,6590 0/0:52,0:52:99:0,147,1851 0/0:74,0:74:99:0,220,2726 0/0:66,0:66:99:0,196,2445 0/0:87,0:87:99:0,250,3103 0/0:56,0:56:99:0,160,2020 0/0:106,0:106:99:0,289,3689 0/0:72,0:72:99:0,190,2407 0/0:75,0:75:99:0,211,2639 0/0:94,0:94:99:0,259,3252 0/0:104,0:104:99:0,289,3633 0/0:109,0:109:99:0,280,3578 0/0:93,1:94:99:0,256,3212 0/0:87,0:87:99:0,241,3041 0/0:96,0:96:99:0,271,3423 0/0:74,0:74:99:0,214,2690 0/0:82,0:82:99:0,235,2976 13 50235157 . C T 6.70 . AC=2;AF=0.024;AN=84;BaseQRankSum=-17.047;DP=1766;Dels=0.00;FS=321.782;HRun=2;HaplotypeScore=1.2635;InbreedingCoeff=-0.0483;MQ=55.40;MQ0=1;MQRankSum=-2.615;QD=0.09;ReadPosRankSum=-7.755 GT:AD:DP:GQ:PL 0/0:29,9:38:56.13:0,56,899 0/0:25,8:33:25.83:0,26,781 0/0:22,2:24:57.17:0,57,701 0/0:39,22:61:1.82:0,2,1215 0/0:27,16:43:25.78:0,26,752 0/0:43,15:59:49.90:0,50,1131 0/0:51,13:64:99:0,126,1598 0/0:48,8:56:60.98:0,61,1325 0/0:28,8:36:26.83:0,27,802 0/0:23,4:27:57.17:0,57,690 0/0:20,7:27:30.47:0,30,610 0/0:25,6:31:69.21:0,69,847 0/0:35,1:36:87.27:0,87,1093 0/0:27,7:34:43.50:0,43,761 0/0:94,23:117:99:0,111,2908 0/0:31,5:36:84.25:0,84,1022 0/0:27,6:33:15.03:0,15,792 0/0:21,3:24:54.16:0,54,663 0/0:36,4:41:99:0,108,1325 0/0:44,5:49:99:0,117,1432 0/0:27,5:32:42.96:0,43,869 0/0:30,6:36:75.22:0,75,930 0/0:42,27:69:2.17:2,0,1352 0/0:36,12:48:12.31:0,12,1014 0/0:41,14:55:63.61:0,64,1086 0/0:41,14:55:50.88:0,51,1076 0/1:22,7:29:42.38:42,0,646 0/0:30,11:41:48.33:0,48,901 0/0:33,6:39:31.04:0,31,978 0/0:27,6:33:18.04:0,18,820 0/0:27,6:33:18.94:0,19,821 0/0:35,5:40:87.24:0,87,1047 0/0:21,1:22:63.19:0,63,774 0/0:27,9:36:78.14:0,78,910 0/0:32,6:38:84.26:0,84,1035 0/0:35,6:41:65.57:0,66,1072 0/1:35,7:42:23.97:24,0,1027 0/0:25,9:34:44.51:0,45,788 0/0:38,11:49:43.04:0,43,1189 0/0:30,13:43:1.24:5,0,730 0/0:30,3:33:81.23:0,81,968 0/0:41,8:49:51.02:0,51,1187 13 51528043 . A C 600.01 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.770;DP=1631;Dels=0.00;FS=0.838;HRun=0;HaplotypeScore=0.4599;InbreedingCoeff=-0.0244;MQ=59.25;MQ0=0;MQRankSum=-0.069;QD=9.38;ReadPosRankSum=0.402 GT:AD:DP:GQ:PL 0/0:34,1:35:90.29:0,90,1145 0/0:40,0:40:99:0,105,1330 0/0:30,0:30:78.25:0,78,995 0/0:46,0:46:99:0,132,1695 0/0:49,0:49:99:0,135,1761 0/0:72,1:73:99:0,196,2590 0/0:38,0:38:99:0,99,1295 0/0:45,0:46:99:0,123,1581 0/0:26,0:26:72.23:0,72,894 0/0:17,0:17:48.15:0,48,605 0/0:31,0:31:87.28:0,87,1102 0/0:30,0:30:81.25:0,81,1013 0/0:36,0:36:93.30:0,93,1188 0/0:22,0:22:63.19:0,63,783 0/0:104,0:104:99:0,268,3395 0/0:27,1:29:75.24:0,75,949 0/0:33,0:33:69.22:0,69,912 0/0:44,0:44:99:0,114,1440 0/0:48,0:48:99:0,123,1574 0/0:41,0:41:99:0,111,1414 0/0:47,0:47:99:0,126,1593 0/0:32,0:32:81.25:0,81,1018 0/0:68,0:68:99:0,193,2474 0/0:49,0:49:99:0,132,1737 0/0:46,0:46:99:0,129,1668 0/0:41,0:41:99:0,108,1410 0/0:24,0:24:66.21:0,66,836 0/0:30,0:30:84.26:0,84,1050 0/0:20,0:20:54.17:0,54,672 0/1:19,20:39:99:478,0,582 0/1:18,7:25:99:185,0,594 0/0:32,0:32:87.26:0,87,1074 0/0:27,0:27:69.22:0,69,883 0/0:31,0:31:81.26:0,81,1031 0/0:30,0:30:75.23:0,75,948 0/0:48,0:48:99:0,129,1631 0/0:47,0:47:99:0,111,1440 0/0:39,0:39:99:0,99,1272 0/0:40,0:40:99:0,105,1339 0/0:42,0:42:99:0,105,1340 0/0:27,0:27:78.23:0,78,958 0/0:29,0:29:75.22:0,75,941 13 51948437 . G T 2473.68 . AC=2;AF=0.024;AN=84;BaseQRankSum=-13.290;DP=6348;DS;Dels=0.00;FS=1.671;HRun=0;HaplotypeScore=2.7270;InbreedingCoeff=-0.0244;MQ=57.23;MQ0=6;MQRankSum=4.033;QD=10.31;ReadPosRankSum=-1.264 GT:AD:DP:GQ:PL 0/0:115,0:115:99:0,322,4021 0/0:110,0:110:99:0,316,3995 0/0:122,0:122:99:0,325,4125 0/0:249,1:250:99:0,713,9566 0/0:250,0:250:99:0,692,9239 0/0:247,0:247:99:0,686,9198 0/0:250,0:250:99:0,695,9353 0/0:250,0:250:99:0,695,9276 0/0:135,0:135:99:0,358,4509 0/0:95,0:95:99:0,250,3129 0/0:114,0:114:99:0,328,4139 0/0:126,0:126:99:0,352,4345 0/0:107,0:107:99:0,292,3680 0/0:125,0:125:99:0,343,4315 0/0:250,0:250:99:0,686,8602 0/0:92,0:92:99:0,250,3101 0/0:125,1:126:99:0,346,4405 0/0:129,0:129:99:0,373,4546 0/0:168,0:168:99:0,445,5518 0/0:154,0:155:99:0,427,5433 0/0:157,3:160:99:0,418,5152 0/0:84,0:84:99:0,232,2939 0/0:250,0:250:99:0,707,9540 0/0:250,0:250:99:0,716,9636 0/0:250,0:250:99:0,716,9567 0/0:250,0:250:99:0,689,9278 0/0:95,0:95:99:0,262,3282 0/0:127,0:127:99:0,352,4382 0/0:117,0:117:99:0,325,4044 0/0:124,0:124:99:0,325,4161 0/0:119,0:119:99:0,322,4091 0/0:144,1:145:99:0,343,4839 0/0:103,0:103:99:0,292,3682 0/0:125,0:125:99:0,367,4593 0/0:112,0:112:99:0,313,3957 0/0:133,0:133:99:0,376,4713 0/1:71,53:124:99:1324,0,2062 0/0:111,0:111:99:0,322,4040 0/1:68,48:116:99:1212,0,2071 0/0:134,0:134:99:0,370,4611 0/0:97,0:97:99:0,268,3383 0/0:106,0:106:99:0,298,3741 13 51948537 . T C 11.19 . 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C T 693.80 . 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A G 45671.77 . 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C T 80.21 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.944;DP=454;Dels=0.00;FS=7.962;HRun=0;HaplotypeScore=0.6176;InbreedingCoeff=-0.0153;MQ=58.95;MQ0=0;MQRankSum=-0.975;QD=11.46;ReadPosRankSum=1.704 GT:AD:DP:GQ:PL 0/0:17,0:17:48.15:0,48,610 0/0:7,0:7:15.05:0,15,185 0/0:12,0:12:33.09:0,33,407 0/0:17,0:17:45.15:0,45,614 0/0:13,0:13:39.13:0,39,516 0/0:8,0:8:24.07:0,24,313 0/0:9,0:9:27.09:0,27,356 0/0:13,0:13:39.13:0,39,522 0/0:12,0:12:33.10:0,33,418 0/0:11,0:11:30.09:0,30,378 0/0:13,0:13:39.12:0,39,485 0/0:10,0:10:30.09:0,30,376 0/0:7,0:7:21.07:0,21,266 0/0:22,0:22:60.19:0,60,751 0/0:25,0:25:57.15:0,57,725 0/0:14,0:14:39.12:0,39,488 0/0:4,0:4:12.04:0,12,155 0/0:10,0:10:30.10:0,30,380 0/0:8,0:8:24.05:0,24,282 0/0:19,0:19:51.16:0,51,638 0/0:11,0:11:27.09:0,27,354 0/0:5,0:5:15.05:0,15,189 0/0:12,0:12:33.11:0,33,451 0/0:8,0:8:24.07:0,24,307 0/0:12,0:12:36.12:0,36,479 0/0:13,0:13:36.12:0,36,481 0/0:8,0:8:21.07:0,21,269 0/0:8,0:8:21.06:0,21,260 0/0:8,0:8:24.08:0,24,305 0/0:10,0:10:27.07:0,27,322 0/1:3,4:7:93.80:126,0,94 0/0:10,0:11:27.09:0,27,343 0/0:10,0:10:30.07:0,30,364 0/0:6,0:6:15.05:0,15,194 0/0:8,0:8:21.07:0,21,271 0/0:10,0:10:21.07:0,21,282 0/0:5,0:5:15.05:0,15,187 0/0:8,0:8:24.08:0,24,302 0/0:7,0:7:21.07:0,21,261 0/0:14,0:14:42.13:0,42,519 0/0:9,0:9:27.08:0,27,329 0/0:13,0:13:39.12:0,39,483 13 52520471 . C T 296.24 . 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C T 2857.38 . AC=10;AF=0.119;AN=84;BaseQRankSum=-8.131;DP=944;Dels=0.00;FS=4.051;HRun=0;HaplotypeScore=0.6865;InbreedingCoeff=-0.1353;MQ=59.18;MQ0=0;MQRankSum=-1.952;QD=11.86;ReadPosRankSum=0.388 GT:AD:DP:GQ:PL 0/0:20,0:20:54.13:0,54,648 0/0:18,0:18:51.16:0,51,637 0/1:9,12:21:99:289,0,268 0/1:15,26:41:99:758,0,417 0/1:19,14:33:99:342,0,569 0/1:9,15:24:99:372,0,253 0/1:12,4:16:45.36:45,0,432 0/0:20,0:21:54.14:0,54,669 0/0:21,0:21:57.16:0,57,669 0/0:17,0:17:45.13:0,45,545 0/0:22,0:22:57.17:0,57,694 0/0:15,0:15:42.11:0,42,496 0/0:10,0:10:24.07:0,24,295 0/0:25,0:25:66.19:0,66,796 0/0:61,0:61:99:0,165,1991 0/0:16,0:16:42.12:0,42,497 0/0:9,0:9:27.08:0,27,326 0/0:11,0:11:33.09:0,33,387 0/0:19,0:19:54.16:0,54,655 0/0:40,0:40:99:0,105,1295 0/0:22,0:22:63.15:0,63,739 0/1:11,11:23:99:294,0,322 0/0:43,0:43:99:0,126,1645 0/0:17,0:18:48.15:0,48,619 0/0:19,0:19:51.16:0,51,639 0/0:16,0:16:42.14:0,42,547 0/0:22,0:22:60.17:0,60,715 0/0:23,0:23:51.12:0,51,587 0/0:18,0:19:51.15:0,51,610 0/1:10,5:15:53.58:54,0,294 0/0:18,0:18:48.15:0,48,615 0/0:23,0:23:66.17:0,66,784 0/1:11,9:20:99:229,0,319 0/1:10,10:20:99:280,0,247 0/0:23,0:23:63.18:0,63,749 0/1:14,13:28:99:328,0,385 0/0:24,0:24:66.20:0,66,809 0/0:24,0:24:72.21:0,72,873 0/0:19,0:19:57.16:0,57,682 0/0:21,0:21:57.18:0,57,704 0/0:22,0:22:60.15:0,60,712 0/0:21,1:22:30.03:0,30,699 13 52523808 . C T 70249.62 . AC=40;AF=0.476;AN=84;BaseQRankSum=-28.618;DP=4737;DS;Dels=0.00;FS=7.912;HRun=1;HaplotypeScore=1.7930;InbreedingCoeff=-0.0500;MQ=59.53;MQ0=0;MQRankSum=-1.772;QD=19.58;ReadPosRankSum=-0.244 GT:AD:DP:GQ:PL 0/0:92,0:92:99:0,259,3301 0/1:58,44:102:99:1238,0,1901 0/1:49,51:101:99:1496,0,1502 0/1:88,60:148:99:1626,0,2733 0/1:90,75:165:99:2225,0,3036 0/1:73,70:143:99:2203,0,2355 0/0:158,1:159:99:0,406,5936 0/1:70,61:131:99:1817,0,2262 0/0:110,0:110:99:0,307,3913 0/0:83,0:83:99:0,238,3003 0/0:116,1:117:99:0,285,3997 0/1:47,53:100:99:1521,0,1419 0/1:46,39:85:99:1130,0,1477 1/1:1,96:97:99:3243,226,0 0/1:129,116:245:99:3321,0,3842 0/0:90,0:90:99:0,253,3206 0/1:38,47:85:99:1395,0,1150 1/1:0,105:105:99:3797,313,0 1/1:0,112:112:99:3948,319,0 0/1:59,65:124:99:1957,0,1755 1/1:0,118:118:99:4070,331,0 0/1:40,42:82:99:1208,0,1296 0/1:87,68:155:99:1773,0,2874 1/1:0,155:155:99:5475,430,0 1/1:1,133:134:99:4671,335,0 0/1:70,68:138:99:2136,0,2159 0/1:39,34:73:99:982,0,1205 0/1:61,42:103:99:1155,0,1908 1/1:1,97:98:99:3345,242,0 0/1:57,51:108:99:1518,0,1734 1/1:0,94:94:99:3321,274,0 1/1:0,90:90:99:3074,247,0 0/0:88,0:88:99:0,247,3159 0/1:50,50:100:99:1447,0,1634 0/1:65,46:111:99:1325,0,1973 0/1:56,53:109:99:1540,0,1725 0/0:104,0:106:99:0,295,3704 0/1:52,39:91:99:1105,0,1631 0/1:44,40:84:99:1189,0,1253 0/0:116,0:116:99:0,325,4132 0/0:91,2:93:99:0,188,3147 0/0:96,0:96:99:0,274,3484 13 52524488 . T C 35443.99 . 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T G 28684.27 . AC=9;AF=0.107;AN=84;BaseQRankSum=34.809;DP=8427;DS;Dels=0.00;FS=1.337;HRun=0;HaplotypeScore=2.1931;InbreedingCoeff=-0.1200;MQ=59.59;MQ0=0;MQRankSum=2.043;QD=15.55;ReadPosRankSum=0.819 GT:AD:DP:GQ:PL 0/0:192,0:192:99:0,536,6615 0/0:170,0:170:99:0,494,6015 0/0:149,0:149:99:0,421,5172 0/0:250,0:250:99:0,695,8588 0/0:250,0:250:99:0,710,8873 0/0:247,0:247:99:0,668,8523 0/1:115,134:249:99:4676,0,3323 0/0:249,1:250:99:0,686,8554 0/0:174,0:174:99:0,475,5816 0/0:155,0:155:99:0,439,5344 0/0:146,0:146:99:0,409,4996 0/1:75,89:164:99:2665,0,2043 0/1:77,92:169:99:2751,0,2081 0/0:147,0:147:99:0,418,5116 0/0:250,0:250:99:0,716,8522 0/1:67,81:149:99:2451,0,1907 0/0:182,0:182:99:0,515,6247 0/0:156,0:156:99:0,457,5511 0/0:246,0:247:99:0,710,8684 0/0:245,1:246:99:0,680,8334 0/1:142,106:249:99:3111,0,4118 0/1:90,118:208:99:3597,0,2399 0/1:143,107:250:99:3427,0,4274 0/0:249,1:250:99:0,623,8367 0/0:250,0:250:99:0,689,8665 0/0:250,0:250:99:0,671,8402 0/0:141,0:141:99:0,385,4702 0/0:192,0:192:99:0,545,6639 0/0:148,0:148:99:0,415,5079 0/0:205,0:205:99:0,596,7225 0/0:166,0:166:99:0,460,5656 0/0:247,0:248:99:0,686,8546 0/1:109,105:214:99:3145,0,3176 0/0:179,0:179:99:0,505,6158 0/0:200,0:200:99:0,563,6920 0/0:200,0:200:99:0,572,6986 0/0:250,0:250:99:0,701,8580 0/1:98,95:193:99:2861,0,2848 0/0:163,0:163:99:0,469,5671 0/0:192,0:192:99:0,554,6796 0/0:164,2:166:99:0,423,5517 0/0:171,0:171:99:0,487,5933 13 53298212 . T G 1310.18 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.104;DP=2393;Dels=0.00;FS=1.117;HRun=0;HaplotypeScore=0.8191;InbreedingCoeff=-0.0244;MQ=59.32;MQ0=0;MQRankSum=-0.190;QD=12.72;ReadPosRankSum=-0.092 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,141,1712 0/0:59,0:59:99:0,169,2048 0/0:60,0:60:99:0,159,1947 0/0:90,0:90:99:0,226,2835 0/0:55,0:55:99:0,156,1955 0/0:73,0:73:99:0,193,2507 0/0:64,0:64:99:0,150,1978 0/0:61,0:61:99:0,147,1908 0/0:42,0:42:99:0,105,1259 0/0:49,0:49:99:0,129,1550 0/0:39,1:40:80.67:0,81,1283 0/0:44,0:44:99:0,117,1446 0/0:50,0:50:99:0,129,1598 0/0:44,0:44:99:0,108,1361 0/0:184,0:184:99:0,445,5498 0/0:41,0:42:99:0,102,1265 0/0:42,0:42:99:0,111,1376 0/0:37,0:37:99:0,102,1254 0/0:68,0:68:99:0,172,2141 0/0:59,0:59:99:0,156,1935 0/0:62,0:62:99:0,163,2045 0/0:61,0:61:99:0,162,1992 0/0:87,0:87:99:0,223,2792 0/0:62,0:62:99:0,159,2021 0/0:67,1:68:99:0,178,2247 0/0:59,0:59:99:0,138,1772 0/0:37,0:37:93.29:0,93,1165 0/0:48,0:48:99:0,132,1625 0/0:35,0:35:90.27:0,90,1109 0/0:52,0:52:99:0,141,1715 0/0:41,0:41:99:0,111,1384 0/0:62,0:62:99:0,172,2129 0/0:55,0:55:99:0,153,1885 0/0:58,0:58:99:0,163,2008 0/0:50,0:50:99:0,135,1670 0/0:46,0:46:99:0,111,1411 0/1:24,30:54:99:832,0,682 0/0:58,0:58:99:0,153,1874 0/1:29,20:49:99:541,0,834 0/0:37,0:37:99:0,105,1288 0/0:41,0:41:99:0,108,1342 0/0:54,0:54:99:0,150,1863 13 54615364 . A C 333.46 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.770;DP=412;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0869;InbreedingCoeff=-0.0374;MQ=59.02;MQ0=0;MQRankSum=1.871;QD=9.53;ReadPosRankSum=1.391 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,288 0/0:15,0:15:36.11:0,36,459 0/1:9,5:14:97.24:97,0,246 0/0:12,0:12:24.08:0,24,325 0/0:10,0:10:27.08:0,27,337 0/0:9,0:9:27.08:0,27,340 0/0:4,0:4:12.03:0,12,139 0/0:7,0:7:18.06:0,18,227 0/0:4,0:4:9.03:0,9,116 0/0:4,0:4:12.04:0,12,140 0/0:5,0:5:15.03:0,15,168 0/0:8,0:8:21.07:0,21,262 0/0:11,0:11:30.09:0,30,370 0/0:3,0:3:9.03:0,9,107 0/0:33,0:33:78.21:0,78,969 0/0:12,0:12:30.09:0,30,377 0/0:11,0:11:33.10:0,33,390 0/0:9,0:9:24.07:0,24,297 0/0:20,0:20:51.16:0,51,640 0/0:13,0:13:30.09:0,30,388 0/0:25,0:25:60.19:0,60,775 0/0:9,0:9:24.07:0,24,293 0/0:5,0:5:15.05:0,15,190 0/0:4,0:4:12.04:0,12,144 0/0:8,0:8:21.06:0,21,256 0/0:3,0:3:9.03:0,9,114 0/0:4,0:4:12.04:0,12,144 0/0:2,0:2:6.02:0,6,71 0/0:8,0:8:21.07:0,21,262 0/0:7,0:7:18.06:0,18,227 0/0:4,0:4:12.04:0,12,143 0/1:10,11:21:99:298,0,236 0/0:9,0:9:24.06:0,24,290 0/0:12,0:12:33.10:0,33,406 0/0:13,0:13:33.10:0,33,412 0/0:11,0:11:30.09:0,30,366 0/0:17,0:17:45.14:0,45,564 0/0:5,0:5:15.02:0,15,157 0/0:6,0:6:18.05:0,18,212 0/0:8,0:8:21.06:0,21,250 0/0:9,0:9:27.08:0,27,321 0/0:10,0:10:24.07:0,24,300 13 60584795 . C A 599.74 . AC=18;AF=0.214;AN=84;BaseQRankSum=-14.693;DP=1535;Dels=0.00;FS=655.195;HRun=2;HaplotypeScore=0.5851;InbreedingCoeff=-0.3057;MQ=58.92;MQ0=0;MQRankSum=1.490;QD=0.79;ReadPosRankSum=-13.423 GT:AD:DP:GQ:PL 0/0:19,20:39:2.29:2,0,634 0/0:11,8:19:3.60:0,4,373 0/1:17,12:29:36.54:37,0,449 0/1:26,35:61:60.62:61,0,888 0/1:24,29:53:7.03:7,0,780 0/1:18,24:42:86.19:86,0,626 0/0:25,25:50:11.15:0,11,767 0/0:16,20:36:7.35:0,7,529 0/0:10,12:22:3.88:0,4,256 0/0:14,9:23:36.11:0,36,449 0/1:10,8:18:35.84:36,0,276 0/1:21,21:42:6.72:7,0,611 0/0:19,17:36:16.39:0,16,528 0/1:7,11:18:9.36:9,0,240 0/1:57,53:110:23.09:23,0,1714 0/0:13,0:13:33.09:0,33,395 0/0:28,13:41:11.18:0,11,756 0/0:19,14:33:54.12:0,54,655 0/1:20,18:38:42.36:42,0,541 0/0:37,1:38:81.24:0,81,1017 0/0:26,15:42:40.21:0,40,826 0/0:23,14:37:25.83:0,26,653 0/1:14,30:44:16.99:17,0,484 0/0:22,23:45:56.60:0,57,693 0/1:18,14:32:12.88:13,0,527 0/0:23,23:46:28.97:0,29,768 0/0:14,14:28:39.12:0,39,491 0/0:21,14:35:24.05:0,24,665 0/1:16,16:32:99:108,0,453 0/0:20,8:28:0.13:0,0,652 0/0:15,10:25:11.71:0,12,500 0/1:28,23:51:42.87:43,0,734 0/1:24,20:44:25.30:25,0,719 0/0:10,14:24:30.09:0,30,366 0/1:18,11:29:10.92:11,0,514 0/0:14,9:23:6.62:0,7,420 0/1:24,20:44:99:144,0,673 0/1:16,16:32:26.24:26,0,445 0/0:10,15:25:30.10:0,30,376 0/1:21,19:40:60.15:60,0,613 0/0:17,21:38:17.70:0,18,544 0/0:13,17:30:32.47:0,32,382 13 60584795 . C CA 1034.39 . AC=24;AF=0.286;AN=84;BaseQRankSum=5.307;DP=1624;FS=842.799;HRun=2;HaplotypeScore=163.5407;InbreedingCoeff=-0.4186;MQ=58.58;MQ0=0;MQRankSum=0.494;QD=0.99;ReadPosRankSum=-17.648 GT:AD:DP:GQ:PL 0/1:41,0:41:4.65:5,0,488 0/1:21,0:21:14.75:15,0,358 0/1:31,0:31:75.36:75,0,446 0/1:60,0:59:79.94:80,0,700 0/1:55,0:55:27.25:27,0,658 0/1:47,0:45:69.36:69,0,491 0/0:49,0:48:10.42:0,10,707 0/0:38,0:38:40.93:0,41,489 0/0:24,0:24:2.18:0,2,307 0/0:23,0:23:33.10:0,33,409 0/1:18,0:18:26.85:27,0,245 0/1:44,0:44:37.03:37,0,611 0/0:36,0:36:3.39:0,3,606 0/1:19,0:19:7.83:8,0,202 0/1:115,0:115:99:177,0,1659 0/0:12,7:19:4.18:0,4,318 0/0:40,0:40:5.34:0,5,586 0/0:36,0:36:41.85:0,42,582 0/1:40,0:40:83.78:84,0,484 0/1:33,24:57:44.28:44,0,832 0/1:46,0:46:63.98:64,0,737 0/0:37,0:37:18.35:0,18,528 0/1:45,0:44:31.51:32,0,470 0/0:45,0:42:3.34:0,3,666 0/1:33,0:32:3.63:4,0,497 0/1:49,0:47:2.52:3,0,551 0/0:29,0:29:26.12:0,26,421 0/1:38,0:38:3.39:3,0,608 0/1:31,0:31:88.38:88,0,395 0/0:30,0:30:6.33:0,6,603 0/0:25,0:25:13.23:0,13,448 0/1:55,0:55:41.80:42,0,750 0/1:44,0:44:73.09:73,0,700 0/0:25,0:25:30.08:0,30,363 0/1:32,0:32:18.95:19,0,461 0/0:25,0:25:8.20:0,8,381 0/1:49,0:49:99:136,0,626 0/1:34,1:35:17.50:17,0,425 0/0:29,0:29:10.13:0,10,335 0/1:41,0:41:76.12:76,0,589 0/0:38,0:38:15.31:0,15,465 0/0:30,0:30:8.19:0,8,381 13 73369642 . A G 42949.55 . AC=28;AF=0.333;AN=84;BaseQRankSum=35.342;DP=3838;DS;Dels=0.00;FS=5.598;HRun=0;HaplotypeScore=1.0548;InbreedingCoeff=-0.1786;MQ=59.53;MQ0=0;MQRankSum=0.811;QD=17.57;ReadPosRankSum=0.579 GT:AD:DP:GQ:PL 0/1:27,40:67:99:1090,0,729 0/1:31,47:78:99:1299,0,817 0/0:66,0:66:99:0,178,2142 0/1:75,53:128:99:1395,0,2002 0/1:54,53:107:99:1608,0,1554 0/1:71,69:141:99:1939,0,2032 0/1:49,56:105:99:1701,0,1322 1/1:1,121:122:99:4232,278,0 0/0:66,0:66:99:0,172,2094 0/1:22,40:62:99:1137,0,570 0/0:74,0:74:99:0,208,2491 1/1:0,83:83:99:2650,205,0 0/1:49,32:81:99:869,0,1279 0/1:40,26:66:99:733,0,1165 0/1:101,124:225:99:3530,0,2435 0/1:23,28:51:99:842,0,620 0/1:43,45:88:99:1270,0,1158 0/0:85,0:85:99:0,223,2732 0/1:49,79:128:99:2236,0,1276 0/1:60,42:102:99:1138,0,1581 1/1:0,146:147:99:4801,379,0 0/1:29,44:73:99:1291,0,767 0/0:125,0:125:99:0,316,3940 0/0:124,0:124:99:0,313,3970 0/1:42,64:106:99:1867,0,1094 0/0:115,0:115:99:0,280,3559 0/1:21,33:54:99:961,0,554 0/1:41,61:102:99:1740,0,1019 0/0:60,0:60:99:0,156,1908 0/0:66,1:67:99:0,138,2067 0/0:61,0:61:99:0,159,1954 0/1:56,48:104:99:1348,0,1499 0/0:84,0:84:99:0,199,2504 0/0:73,0:73:99:0,205,2468 0/0:71,2:73:99:0,132,2329 0/0:88,0:88:99:0,235,2861 0/0:101,1:102:99:0,234,3108 0/1:43,45:88:99:1264,0,1154 0/0:60,1:61:99:0,146,1994 0/1:43,35:79:99:1025,0,1167 0/1:23,34:57:99:983,0,633 0/0:68,2:70:99:0,139,2145 13 73482747 . C A 498.03 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.133;DP=2998;Dels=0.00;FS=1.783;HRun=1;HaplotypeScore=0.7472;InbreedingCoeff=-0.0120;MQ=59.35;MQ0=0;MQRankSum=-0.707;QD=11.32;ReadPosRankSum=-0.297 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,165,2066 0/0:56,0:56:99:0,150,1916 0/0:53,0:53:99:0,153,1960 0/0:131,0:131:99:0,373,5034 0/0:119,0:119:99:0,343,4647 0/0:114,0:114:99:0,325,4413 0/0:95,0:95:99:0,271,3668 0/0:82,0:82:99:0,226,3071 0/0:57,0:57:99:0,159,2036 0/0:48,0:48:99:0,138,1758 0/0:37,0:37:99:0,108,1380 0/0:41,0:41:99:0,117,1486 0/0:50,0:51:99:0,141,1798 0/0:52,0:52:99:0,153,1896 0/0:198,0:198:99:0,533,6846 0/0:46,0:46:99:0,129,1631 0/0:72,0:72:99:0,190,2441 0/0:65,0:66:99:0,187,2368 0/0:91,0:91:99:0,262,3300 0/0:83,0:83:99:0,235,2997 0/0:88,0:88:99:0,241,3078 0/0:51,1:52:99:0,110,1808 0/0:147,0:147:99:0,415,5659 0/0:96,0:96:99:0,283,3807 0/0:91,0:91:99:0,250,3399 0/0:95,0:95:99:0,274,3619 0/0:31,0:31:90.28:0,90,1129 0/0:57,0:57:99:0,156,1994 0/0:43,1:44:97.17:0,97,1616 0/0:45,0:45:99:0,120,1540 0/0:39,0:39:99:0,111,1427 0/0:74,0:75:99:0,193,2481 0/0:43,0:43:99:0,129,1621 0/0:46,0:46:99:0,129,1647 0/0:53,0:53:99:0,153,1952 0/0:66,0:66:99:0,187,2377 0/0:90,0:90:99:0,238,3056 0/0:59,0:59:99:0,160,2029 0/0:60,0:60:99:0,178,2217 0/0:69,0:69:99:0,193,2456 0/1:25,19:44:99:544,0,726 0/0:58,0:58:99:0,169,2166 13 75863245 . A C 4704.43 . 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A AC 7162.03 . 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G A 4871.98 . 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T C 2579.36 . AC=33;AF=0.393;AN=84;BaseQRankSum=-25.947;DP=2253;Dels=0.00;FS=2755.198;HRun=2;HaplotypeScore=1.0809;InbreedingCoeff=-0.6386;MQ=59.07;MQ0=0;MQRankSum=0.211;QD=1.43;ReadPosRankSum=-22.853 GT:AD:DP:GQ:PL 0/1:32,11:43:99:106,0,933 0/1:31,6:38:55.87:56,0,972 0/0:23,6:29:36.97:0,37,688 0/1:67,26:93:27.64:28,0,2170 0/1:59,37:96:99:259,0,1740 0/1:58,22:80:11.86:12,0,1925 0/1:35,18:53:99:116,0,1097 0/0:40,17:57:36.87:0,37,1231 0/1:21,13:34:99:100,0,666 0/0:27,7:34:47.01:0,47,859 0/1:23,15:38:48.10:48,0,743 0/1:18,19:38:99:158,0,507 0/0:25,9:34:1.47:0,1,772 0/1:21,15:36:99:160,0,673 0/1:115,52:168:99:187,0,3507 0/1:31,12:43:45.69:46,0,902 0/1:30,11:41:2.98:3,0,942 0/1:33,13:46:39.33:39,0,1083 0/0:57,23:80:83.49:0,83,1890 0/0:49,20:70:72.37:0,72,1516 0/1:48,20:68:99:136,0,1517 0/1:24,11:35:8.52:9,0,697 0/1:56,21:77:99:115,0,1950 0/1:37,17:54:94.58:95,0,1202 0/0:45,14:60:25.49:0,25,1507 0/1:29,24:53:98.71:99,0,878 0/1:20,14:34:74.57:75,0,656 0/1:23,19:42:99:121,0,658 0/1:28,9:37:7.75:8,0,921 0/0:37,16:53:1.14:0,1,1180 0/1:25,14:39:99:120,0,770 0/1:37,22:59:44.79:45,0,1119 0/1:36,19:55:99:125,0,1020 0/1:33,16:49:32.12:32,0,1048 0/1:31,15:46:0.90:1,0,928 0/1:36,24:60:55.77:56,0,1190 0/1:62,22:84:99:121,0,1896 0/1:20,11:31:80.97:81,0,605 0/1:24,7:31:21.42:21,0,819 0/1:35,17:52:99:158,0,1062 0/0:23,9:32:15.34:0,15,736 0/1:38,12:50:15.97:16,0,1155 13 75876389 . G A 63174.84 . AC=45;AF=0.536;AN=84;BaseQRankSum=11.923;DP=4101;Dels=0.00;FS=4.787;HRun=1;HaplotypeScore=1.3434;InbreedingCoeff=-0.0051;MQ=59.37;MQ0=0;MQRankSum=-0.095;QD=19.43;ReadPosRankSum=0.368 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2574,205,0 0/1:50,30:80:99:815,0,1372 0/0:80,0:81:99:0,217,2528 1/1:0,168:168:99:5545,436,0 1/1:0,152:152:99:5152,400,0 0/0:165,0:166:99:0,421,5397 0/1:83,78:161:99:1931,0,2393 0/1:104,66:170:99:1846,0,2880 1/1:0,84:84:99:2717,217,0 1/1:0,66:66:99:2107,169,0 1/1:1,65:66:99:2111,142,0 1/1:1,80:81:99:2621,178,0 0/1:33,28:61:99:769,0,901 0/1:42,27:69:99:752,0,1114 0/1:123,127:250:99:3407,0,3053 0/1:31,34:65:99:971,0,823 0/1:40,41:81:99:1173,0,1080 0/1:37,47:84:99:1294,0,971 0/0:93,0:93:99:0,235,2798 0/0:91,0:91:99:0,238,2870 0/0:92,0:92:99:0,241,2836 0/1:36,24:60:99:609,0,917 0/1:105,74:179:99:2029,0,3089 0/1:76,49:125:99:1316,0,2200 1/1:0,125:125:99:4111,322,0 0/1:78,65:143:99:1767,0,2178 0/1:31,21:52:99:572,0,843 0/1:40,44:84:99:1196,0,1037 1/1:0,77:77:99:2490,199,0 0/0:77,0:77:99:0,214,2480 0/1:39,35:74:99:1011,0,1026 0/1:59,33:92:99:867,0,1464 0/1:39,34:73:99:895,0,1056 1/1:0,69:69:99:2390,193,0 1/1:0,84:85:99:2849,229,0 0/1:39,26:65:99:659,0,1102 0/1:38,40:78:99:1141,0,1008 1/1:0,74:74:99:2489,202,0 0/0:89,0:89:99:0,244,2852 0/0:98,0:98:99:0,268,3135 0/1:45,36:81:99:999,0,1247 0/0:63,0:63:99:0,165,1920 13 75884216 . C T 59197.78 . AC=73;AF=0.869;AN=84;BaseQRankSum=-21.651;DP=2164;Dels=0.00;FS=9.783;HRun=0;HaplotypeScore=0.7158;InbreedingCoeff=-0.1507;MQ=59.43;MQ0=1;MQRankSum=1.681;QD=27.36;ReadPosRankSum=-0.022 GT:AD:DP:GQ:PL 1/1:0,32:32:93.26:1074,93,0 1/1:0,29:29:78.22:924,78,0 1/1:0,38:38:99:1274,108,0 1/1:0,102:102:99:3316,277,0 1/1:0,101:101:99:3321,280,0 1/1:0,82:82:99:2894,235,0 1/1:0,75:75:99:2582,214,0 0/1:41,35:76:99:975,0,1327 1/1:0,31:31:93.23:1040,93,0 1/1:0,34:34:93.28:1113,93,0 1/1:0,32:32:90.26:1055,90,0 1/1:0,26:26:78.22:899,78,0 1/1:0,43:43:99:1332,111,0 1/1:0,32:32:87.27:1064,87,0 0/1:78,54:132:99:1376,0,2291 0/1:21,14:35:99:373,0,661 1/1:0,32:32:93.28:1106,93,0 1/1:0,39:39:99:1309,111,0 1/1:0,55:55:99:1888,156,0 0/1:28,24:52:99:679,0,867 1/1:0,87:87:99:2819,235,0 1/1:0,38:38:99:1237,105,0 1/1:0,118:118:99:3878,325,0 1/1:0,61:61:99:2020,168,0 1/1:0,67:67:99:2230,187,0 0/1:42,37:79:99:993,0,1316 0/1:12,11:23:99:329,0,313 0/1:16,19:35:99:569,0,454 1/1:0,46:46:99:1558,132,0 1/1:0,30:30:87.25:1017,87,0 1/1:0,32:32:84.24:1000,84,0 0/1:41,25:66:99:671,0,1278 1/1:1,36:37:63.73:1134,64,0 1/1:0,27:27:75.22:884,75,0 1/1:0,32:32:90.27:1084,90,0 1/1:0,41:41:99:1314,108,0 1/1:0,64:64:99:2069,172,0 1/1:0,45:45:99:1437,120,0 1/1:0,42:42:99:1425,120,0 0/1:21,22:43:99:659,0,592 0/1:14,21:35:99:581,0,427 0/1:14,24:38:99:699,0,417 13 75884271 . G T 240.63 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.061;DP=1074;Dels=0.00;FS=8.589;HRun=2;HaplotypeScore=0.5474;InbreedingCoeff=-0.0121;MQ=59.19;MQ0=0;MQRankSum=0.052;QD=12.03;ReadPosRankSum=-1.109 GT:AD:DP:GQ:PL 0/0:10,0:10:27.08:0,27,320 0/0:15,0:15:45.13:0,45,540 0/0:18,0:18:48.11:0,48,550 0/0:46,0:46:99:0,138,1786 0/0:40,0:41:99:0,117,1547 0/0:35,0:35:99:0,99,1292 0/0:36,0:36:99:0,108,1432 0/0:36,0:36:99:0,105,1351 0/0:18,0:18:54.17:0,54,660 0/0:16,0:16:48.14:0,48,572 0/0:17,0:17:51.15:0,51,609 0/0:18,0:18:54.16:0,54,649 0/0:18,0:18:54.16:0,54,645 0/0:19,0:19:57.18:0,57,702 0/0:55,0:56:99:0,153,1832 0/0:17,0:17:48.14:0,48,575 0/0:16,0:16:48.13:0,48,559 0/0:16,0:16:45.13:0,45,537 0/0:33,0:33:96.27:0,96,1143 0/0:37,0:37:99:0,105,1221 0/0:33,0:33:90.24:0,90,1057 0/0:15,0:15:39.08:0,39,446 0/0:65,0:65:99:0,187,2481 0/0:35,0:35:99:0,102,1320 0/0:32,0:32:93.30:0,93,1229 0/0:35,1:36:76.77:0,77,1319 0/0:9,0:9:27.08:0,27,326 0/1:10,10:20:99:287,0,310 0/0:21,0:21:63.17:0,63,742 0/0:14,0:14:39.12:0,39,475 0/0:17,0:17:42.13:0,42,520 0/0:29,0:29:87.27:0,87,1065 0/0:12,0:12:33.10:0,33,397 0/0:22,0:22:60.18:0,60,720 0/0:24,0:24:69.21:0,69,837 0/0:31,0:31:84.26:0,84,1023 0/0:35,0:35:99:0,105,1218 0/0:21,0:21:63.19:0,63,755 0/0:21,0:21:60.18:0,60,729 0/0:23,0:23:66.18:0,66,784 0/0:10,0:10:30.08:0,30,348 0/0:31,0:31:87.24:0,87,1021 13 76287354 . C G 310.96 . 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C T 875.88 . 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C T 2113.25 . 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TA T 15.53 . 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A G 1255.94 . 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C T 13551.57 . AC=14;AF=0.167;AN=84;BaseQRankSum=-8.022;DP=2440;Dels=0.00;FS=41.878;HRun=1;HaplotypeScore=0.9005;InbreedingCoeff=0.1429;MQ=59.38;MQ0=0;MQRankSum=1.609;QD=16.39;ReadPosRankSum=0.642 GT:AD:DP:GQ:PL 0/0:36,0:36:93.30:0,93,1197 0/0:33,0:33:93.25:0,93,1150 0/0:32,0:32:87.28:0,87,1121 1/1:0,107:107:99:3593,280,0 0/1:67,53:120:99:1611,0,2128 0/1:69,66:136:99:1925,0,1974 0/1:56,46:102:99:1394,0,1702 0/0:133,0:133:99:0,334,4582 0/0:50,0:50:99:0,138,1751 0/0:39,0:39:93.29:0,93,1208 0/0:39,0:39:99:0,105,1350 0/0:44,0:44:99:0,111,1460 0/0:39,0:39:99:0,108,1361 0/0:24,0:24:69.21:0,69,862 0/0:143,0:143:99:0,337,4433 0/0:27,0:27:72.23:0,72,930 0/0:55,0:55:99:0,144,1839 0/0:48,2:51:90.66:0,91,1625 0/0:37,0:37:96.30:0,96,1227 0/1:26,14:40:99:378,0,734 0/0:37,0:37:87.28:0,87,1140 0/0:32,0:32:87.28:0,87,1119 0/1:81,60:141:99:1668,0,2349 0/0:118,0:118:99:0,322,4417 0/0:131,0:131:99:0,337,4580 0/0:122,0:122:99:0,319,4390 1/1:0,18:18:51.16:645,51,0 0/1:31,30:61:99:791,0,899 0/1:15,12:27:99:335,0,426 0/0:40,0:40:99:0,102,1299 0/0:29,0:29:75.24:0,75,988 0/0:40,0:40:99:0,105,1363 0/1:13,7:20:99:210,0,383 0/0:44,0:44:99:0,120,1520 0/0:44,0:44:99:0,114,1461 0/0:32,0:32:93.29:0,93,1167 0/1:10,17:27:99:462,0,246 0/0:39,1:40:73.07:0,73,1288 0/1:10,18:28:99:540,0,305 0/0:34,0:34:87.27:0,87,1107 0/0:31,1:32:49.48:0,49,1033 0/0:56,0:56:99:0,144,1867 13 79766188 . A G 7847.85 . AC=25;AF=0.298;AN=84;BaseQRankSum=10.846;DP=1133;Dels=0.00;FS=8.654;HRun=1;HaplotypeScore=0.5160;InbreedingCoeff=0.0319;MQ=59.23;MQ0=0;MQRankSum=-0.060;QD=14.98;ReadPosRankSum=0.379 GT:AD:DP:GQ:PL 0/1:16,5:21:99:130,0,498 0/0:23,0:23:69.21:0,69,835 0/1:13,4:17:99:100,0,375 0/1:20,14:34:99:386,0,484 0/1:13,14:27:99:427,0,380 0/0:55,0:55:99:0,141,1832 0/1:18,11:29:99:324,0,538 0/0:57,0:57:99:0,138,1794 0/0:27,0:27:72.22:0,72,878 0/0:32,0:32:84.26:0,84,1036 0/0:21,0:21:57.17:0,57,698 0/1:12,9:21:99:253,0,379 0/0:13,0:13:36.10:0,36,426 1/1:0,21:21:54.16:683,54,0 0/0:52,0:53:99:0,144,1754 0/0:14,0:14:42.13:0,42,506 0/0:17,0:17:48.15:0,48,596 0/1:11,16:27:99:444,0,332 1/1:0,30:31:84.22:995,84,0 1/1:0,30:30:78.24:989,78,0 0/1:26,14:40:99:414,0,708 0/1:13,8:21:99:227,0,351 0/1:29,19:48:99:605,0,799 0/0:41,0:41:96.31:0,96,1261 0/0:36,0:36:96.31:0,96,1229 0/1:23,3:26:50.10:50,0,672 0/1:5,6:11:99:195,0,143 0/0:19,0:19:51.15:0,51,630 0/1:17,8:25:99:231,0,472 0/1:6,7:13:99:227,0,180 1/1:0,18:18:51.14:628,51,0 0/0:31,0:31:87.26:0,87,1054 0/0:20,0:20:57.17:0,57,688 0/1:12,5:17:99:123,0,392 0/1:17,9:26:99:272,0,477 0/0:32,0:32:81.25:0,81,1016 0/0:26,0:26:75.23:0,75,897 0/0:26,0:26:72.22:0,72,892 0/1:15,6:21:99:145,0,411 0/0:22,0:22:63.19:0,63,760 0/0:19,0:19:54.17:0,54,663 0/0:25,0:25:69.22:0,69,864 13 83597934 . A T 1945.53 . AC=41;AF=0.586;AN=70;BaseQRankSum=2.255;DP=112;Dels=0.00;FS=3.001;HRun=1;HaplotypeScore=0.0562;InbreedingCoeff=-0.0758;MQ=59.00;MQ0=0;MQRankSum=-0.350;QD=19.65;ReadPosRankSum=0.107 GT:AD:DP:GQ:PL 1/1:0,2:2:3.01:45,3,0 1/1:0,2:2:6.02:75,6,0 0/1:1,1:2:30.11:31,0,30 1/1:0,2:2:6.02:71,6,0 ./. ./. 0/1:2,2:4:35.74:68,0,36 ./. 1/1:0,2:2:6.02:70,6,0 0/1:1,2:3:27.10:63,0,27 0/0:4,0:4:12.03:0,12,138 ./. 1/1:0,3:3:6.02:82,6,0 1/1:0,3:3:9.03:106,9,0 0/1:7,5:12:99:125,0,169 0/1:1,1:2:30.11:32,0,30 0/1:2,3:5:32.73:88,0,33 1/1:0,4:4:12.04:146,12,0 0/1:1,1:2:29.23:30,0,29 0/1:5,3:8:86.29:86,0,133 0/0:2,0:2:6.02:0,6,71 0/1:2,3:5:35.74:73,0,36 0/1:1,2:3:27.95:67,0,28 0/1:2,1:3:31.78:32,0,39 ./. 0/0:1,0:1:3.01:0,3,36 ./. 1/1:0,4:4:12.04:146,12,0 1/1:0,1:1:3.01:36,3,0 0/1:3,1:4:24.09:24,0,94 0/0:2,0:2:6.02:0,6,71 0/0:1,0:1:3.01:0,3,37 ./. 1/1:0,3:3:9.03:111,9,0 0/1:3,1:4:24.94:25,0,101 1/1:0,5:5:12.04:154,12,0 1/1:0,1:1:3.01:37,3,0 0/1:0,1:1:1.76:36,3,0 1/1:0,3:3:9.03:109,9,0 0/0:1,0:1:3.01:0,3,37 0/1:1,5:6:17.45:139,0,17 0/0:2,0:2:6.02:0,6,69 13 92380829 . G A 4329.75 . AC=2;AF=0.024;AN=84;BaseQRankSum=-10.471;DP=6147;DS;Dels=0.00;FS=3.769;HRun=3;HaplotypeScore=3.1529;InbreedingCoeff=-0.0244;MQ=59.58;MQ0=0;MQRankSum=3.474;QD=13.16;ReadPosRankSum=-0.162 GT:AD:DP:GQ:PL 0/0:115,0:115:99:0,313,3945 0/0:115,0:115:99:0,322,4063 0/0:89,0:90:99:0,262,3325 0/0:227,0:227:99:0,602,8055 0/0:171,0:171:99:0,470,6299 0/0:165,0:165:99:0,463,6192 0/0:133,0:134:99:0,370,4902 0/0:173,0:173:99:0,470,6328 0/0:132,0:132:99:0,352,4542 0/0:123,0:123:99:0,319,4046 0/0:119,0:119:99:0,331,4177 0/0:115,0:116:99:0,316,3986 0/0:99,0:99:99:0,274,3486 0/0:129,0:129:99:0,358,4533 0/0:248,0:250:99:0,659,8217 0/0:81,0:81:99:0,226,2833 0/0:136,0:137:99:0,379,4788 0/1:63,61:125:99:1749,0,1905 0/1:105,96:204:99:2581,0,2935 0/0:243,0:243:99:0,641,8161 0/0:225,0:227:99:0,602,7547 0/0:130,0:130:99:0,355,4534 0/0:198,0:198:99:0,536,7212 0/0:156,0:156:99:0,427,5666 0/0:166,1:167:99:0,436,5911 0/0:162,0:162:99:0,433,5807 0/0:92,0:92:99:0,238,2997 0/0:124,0:124:99:0,343,4305 0/0:100,0:100:99:0,280,3506 0/0:126,0:126:99:0,325,4157 0/0:116,0:116:99:0,340,4270 0/0:230,0:230:99:0,605,7717 0/0:147,0:147:99:0,412,5129 0/0:124,0:124:99:0,325,4119 0/0:104,0:104:99:0,292,3642 0/0:143,0:143:99:0,376,4821 0/0:188,1:191:99:0,515,6459 0/0:133,0:133:99:0,367,4633 0/0:124,0:124:99:0,343,4295 0/0:143,0:143:99:0,400,5077 0/0:131,0:132:99:0,358,4532 0/0:130,0:130:99:0,370,4676 13 95254181 . C G 120.95 . AC=2;AF=0.027;AN=74;BaseQRankSum=2.475;DP=116;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0561;InbreedingCoeff=-0.1135;MQ=57.52;MQ0=0;MQRankSum=0.254;QD=15.12;ReadPosRankSum=1.008 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,39 ./. 0/0:4,0:4:9.03:0,9,111 0/0:6,0:6:18.06:0,18,240 0/0:5,0:5:15.05:0,15,206 0/1:1,3:4:27.97:111,0,28 0/1:2,2:4:69.73:70,0,71 0/0:6,0:6:15.05:0,15,210 0/0:3,0:3:6.02:0,6,76 0/0:2,0:2:6.02:0,6,78 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.03:0,9,114 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.03:0,9,108 0/0:6,0:6:15.03:0,15,164 0/0:2,0:2:6.01:0,6,65 0/0:5,0:5:15.05:0,15,189 0/0:2,0:2:6:0,6,56 0/0:3,0:3:9.02:0,9,104 0/0:3,0:3:9.03:0,9,117 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.03:0,9,115 0/0:5,0:5:12.04:0,12,166 0/0:2,0:2:6.02:0,6,80 0/0:4,0:4:12.04:0,12,158 0/0:5,0:5:15.05:0,15,202 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.03:0,9,114 ./. 0/0:2,0:2:6.02:0,6,76 ./. ./. 0/0:6,0:6:12.04:0,12,154 0/0:2,0:2:6.02:0,6,70 0/0:1,0:1:3.01:0,3,33 0/0:5,0:5:15.05:0,15,187 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.03:0,9,108 ./. 0/0:5,0:5:12.04:0,12,154 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,67 13 95860075 . T C 572.16 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.664;DP=1782;Dels=0.00;FS=5.369;HRun=0;HaplotypeScore=0.3170;InbreedingCoeff=-0.0244;MQ=59.30;MQ0=0;MQRankSum=0.493;QD=10.80;ReadPosRankSum=-1.152 GT:AD:DP:GQ:PL 0/0:35,0:35:96.29:0,96,1151 0/0:28,0:28:81.24:0,81,975 0/0:26,0:26:75.23:0,75,903 0/0:66,0:66:99:0,184,2228 0/0:69,0:69:99:0,199,2447 0/0:75,0:75:99:0,223,2801 0/0:46,0:46:99:0,135,1679 0/0:45,0:45:99:0,132,1627 0/0:38,0:38:99:0,105,1260 0/0:23,0:23:69.20:0,69,810 0/0:34,0:34:99:0,99,1206 0/0:39,0:39:99:0,105,1281 0/0:39,0:39:99:0,105,1261 0/0:32,0:33:87.26:0,87,1058 0/0:110,0:110:99:0,304,3675 0/0:30,0:30:84.26:0,84,1024 0/0:42,0:42:99:0,123,1489 0/0:29,0:29:84.26:0,84,1015 0/0:59,0:59:99:0,165,1997 0/0:51,0:51:99:0,147,1787 0/0:53,0:53:99:0,147,1817 0/0:30,0:30:90.26:0,90,1064 0/0:79,0:79:99:0,220,2692 0/0:49,0:49:99:0,138,1708 0/0:45,0:45:99:0,135,1638 0/0:58,0:58:99:0,163,2042 0/0:30,0:30:75.23:0,75,906 0/0:31,0:31:84.26:0,84,1027 0/0:29,0:29:87.26:0,87,1037 0/1:14,9:23:99:264,0,397 0/1:17,12:30:99:371,0,536 0/0:46,0:46:99:0,132,1622 0/0:40,0:40:99:0,111,1339 0/0:35,0:35:96.30:0,96,1179 0/0:22,0:22:63.19:0,63,768 0/0:35,0:35:99:0,99,1189 0/0:40,0:40:99:0,120,1407 0/0:26,0:26:78.24:0,78,929 0/0:38,0:38:99:0,105,1292 0/0:47,0:47:99:0,135,1640 0/0:47,0:47:99:0,135,1614 0/0:32,0:32:90.28:0,90,1098 13 96246264 . A G 6589.65 . AC=2;AF=0.024;AN=84;BaseQRankSum=19.909;DP=4688;DS;Dels=0.00;FS=26.947;HRun=1;HaplotypeScore=1.4246;InbreedingCoeff=-0.0244;MQ=59.59;MQ0=0;MQRankSum=3.001;QD=16.27;ReadPosRankSum=3.629 GT:AD:DP:GQ:PL 0/0:84,0:84:99:0,235,2964 0/0:96,0:96:99:0,253,3182 0/0:105,0:105:99:0,292,3663 0/1:88,86:174:99:2816,0,2719 0/0:211,0:211:99:0,602,7825 0/0:170,0:170:99:0,479,6342 0/0:189,0:190:99:0,521,6830 0/0:186,0:186:99:0,524,6802 0/0:103,0:103:99:0,277,3484 0/0:80,0:80:99:0,217,2693 0/0:76,0:76:99:0,214,2666 0/0:74,0:74:99:0,205,2584 0/0:87,0:87:99:0,238,3021 0/0:83,0:83:99:0,235,2972 0/0:250,0:250:99:0,662,8404 0/0:70,0:70:99:0,202,2506 0/0:85,0:85:99:0,238,2998 0/0:76,0:76:99:0,220,2708 0/0:117,0:117:99:0,307,3927 0/0:99,0:101:99:0,244,3132 0/0:140,0:140:99:0,382,4828 0/0:55,0:55:99:0,153,1913 0/1:118,113:231:99:3774,0,3597 0/0:164,0:164:99:0,469,6101 0/0:178,0:178:99:0,488,6436 0/0:161,0:161:99:0,433,5608 0/0:52,0:52:99:0,144,1803 0/0:92,0:92:99:0,262,3269 0/0:70,0:70:99:0,202,2513 0/0:108,0:108:99:0,304,3768 0/0:81,0:81:99:0,232,2927 0/0:120,0:120:99:0,313,3980 0/0:69,0:69:99:0,187,2371 0/0:87,0:87:99:0,238,2947 0/0:60,0:60:99:0,169,2109 0/0:89,0:89:99:0,247,3113 0/0:116,0:116:99:0,295,3768 0/0:80,0:80:99:0,226,2824 0/0:70,0:70:99:0,199,2474 0/0:82,0:82:99:0,229,2879 0/0:75,0:75:99:0,211,2631 0/0:90,0:90:99:0,259,3231 13 98637679 . G A 1182.08 . AC=15;AF=0.179;AN=84;BaseQRankSum=-14.862;DP=2577;Dels=0.00;FS=57.108;HRun=1;HaplotypeScore=2.0276;InbreedingCoeff=-0.2285;MQ=58.86;MQ0=0;MQRankSum=-0.627;QD=1.28;ReadPosRankSum=-11.045 GT:AD:DP:GQ:PL 0/0:32,12:44:41.67:0,42,690 0/1:20,12:33:68.53:69,0,302 0/0:37,9:46:21.81:0,22,716 0/1:90,37:129:54.45:54,0,1507 0/1:76,28:104:34.26:34,0,1274 0/0:96,18:114:99:0,117,2087 0/0:73,15:88:99:0,110,1441 0/0:72,12:84:79.37:0,79,1577 0/0:43,7:50:49.88:0,50,1030 0/0:26,8:34:3.81:0,4,544 0/0:35,10:45:15.84:0,16,675 0/1:20,8:28:9.07:9,0,418 0/0:21,8:29:16.54:0,17,469 0/0:23,12:35:33.08:0,33,371 0/1:80,68:149:99:415,0,1496 0/0:24,7:31:4.70:0,5,463 0/0:25,13:38:3.91:0,4,590 0/0:48,14:62:47.99:0,48,1050 0/1:34,27:61:99:135,0,715 0/0:91,8:99:99:0,172,2134 0/1:35,21:56:99:171,0,589 0/0:34,7:41:52.42:0,52,759 0/0:91,38:129:20.56:0,21,1782 0/0:78,19:97:69.38:0,69,1528 0/0:80,25:105:52.11:0,52,1507 0/0:86,15:101:99:0,102,1608 0/0:28,7:36:27.66:0,28,627 0/1:28,15:43:12.16:12,0,361 0/1:31,16:47:21.83:22,0,480 0/1:34,8:42:61.92:62,0,615 0/1:39,7:46:20.21:20,0,820 0/0:69,9:78:99:0,140,1720 0/0:38,9:47:53.47:0,53,816 0/1:31,13:44:7.59:8,0,631 0/1:29,12:41:99:101,0,514 0/0:39,16:55:12.22:0,12,876 0/1:27,29:56:99:213,0,515 0/0:33,16:49:10.78:0,11,570 0/1:35,9:44:8.82:9,0,630 0/0:35,6:41:48.52:0,49,812 0/0:20,7:27:14.40:0,14,380 0/0:39,10:49:26.79:0,27,756 13 98637681 . C A 34.88 . 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A G 6368.40 . 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C T 1530.18 . 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C T 19964.79 . AC=31;AF=0.369;AN=84;BaseQRankSum=-17.688;DP=1861;Dels=0.00;FS=3.354;HRun=0;HaplotypeScore=1.0834;InbreedingCoeff=-0.0736;MQ=58.93;MQ0=0;MQRankSum=-1.323;QD=16.42;ReadPosRankSum=-4.422 GT:AD:DP:GQ:PL 0/1:16,16:32:99:427,0,473 0/0:29,0:29:81.23:0,81,983 0/1:6,10:16:99:282,0,174 0/1:49,36:85:99:885,0,1409 0/1:46,23:69:99:606,0,1592 0/0:72,0:72:99:0,196,2569 0/0:47,0:47:99:0,123,1645 0/0:40,0:40:99:0,105,1413 0/1:28,18:46:99:441,0,803 1/1:0,35:35:96.27:1132,96,0 0/0:37,0:37:99:0,102,1252 0/0:39,0:39:99:0,105,1328 0/1:14,15:30:99:419,0,429 0/0:31,0:31:90.28:0,90,1129 0/1:52,59:111:99:1632,0,1399 0/1:15,24:39:99:707,0,408 0/1:20,16:36:99:458,0,615 0/1:21,15:36:99:397,0,618 1/1:0,69:69:99:2317,193,0 0/1:42,27:69:99:669,0,1253 0/0:61,0:61:99:0,162,1917 0/1:20,11:31:99:251,0,619 0/1:43,36:79:99:946,0,1208 0/1:27,26:53:99:761,0,761 1/1:0,66:66:99:2207,178,0 0/0:56,0:56:99:0,153,2009 0/1:12,12:24:99:325,0,341 0/0:28,0:28:78.23:0,78,961 0/1:13,18:31:99:516,0,380 0/1:19,18:37:99:523,0,530 0/0:32,0:32:87.27:0,87,1084 0/1:26,19:45:99:545,0,715 1/1:0,38:38:93.27:1145,93,0 0/0:39,0:39:99:0,99,1250 0/0:29,2:31:39.50:0,40,955 0/0:31,0:31:93.28:0,93,1132 0/1:23,22:45:99:631,0,642 0/0:35,0:35:87.24:0,87,1071 1/1:0,26:26:72.22:869,72,0 0/1:23,14:37:99:384,0,653 0/1:14,17:31:99:490,0,413 0/0:36,1:37:96.29:0,96,1185 13 99038001 . C T 1909.38 . 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T G 32374.10 . AC=27;AF=0.321;AN=84;BaseQRankSum=27.304;DP=3501;Dels=0.00;FS=20.571;HRun=0;HaplotypeScore=1.6760;InbreedingCoeff=0.3996;MQ=55.18;MQ0=147;MQRankSum=9.775;QD=21.24;ReadPosRankSum=-0.507 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1796,141,0 0/1:31,36:67:99:1000,0,793 0/1:33,32:65:99:866,0,833 0/1:71,73:144:99:2226,0,1774 0/1:79,40:119:99:1159,0,2112 0/0:115,0:115:99:0,286,3658 0/0:85,0:85:99:0,220,2724 0/0:90,1:91:99:0,189,2733 0/1:23,41:64:99:1146,0,551 0/1:18,32:50:99:981,0,448 0/0:53,0:53:99:0,144,1712 0/0:57,0:57:99:0,132,1596 0/0:54,0:54:99:0,138,1664 0/0:56,0:56:99:0,132,1624 0/0:213,0:213:99:0,505,6087 0/0:54,0:54:99:0,138,1664 0/1:40,29:69:99:729,0,1026 0/0:55,0:55:99:0,129,1578 0/1:77,62:139:99:1618,0,1966 1/1:0,138:138:99:4127,316,0 0/0:139,0:139:99:0,328,4105 0/0:94,0:94:99:0,220,2662 0/0:144,0:145:99:0,337,4175 0/0:89,0:89:99:0,223,2788 0/0:91,1:92:99:0,180,2702 0/0:101,0:102:99:0,262,3204 0/0:38,1:39:99:0,99,1165 0/0:72,0:72:99:0,186,2205 0/1:21,22:43:99:624,0,571 0/0:52,1:53:99:0,121,1665 0/0:47,0:47:99:0,132,1566 0/0:128,0:128:99:0,307,3787 0/0:82,0:82:99:0,211,2580 1/1:0,53:53:99:1767,141,0 1/1:0,66:66:99:2195,172,0 0/1:38,40:78:99:1055,0,1127 1/1:0,133:133:99:4438,349,0 1/1:0,76:76:99:2550,202,0 1/1:0,50:50:99:1650,129,0 0/1:29,37:66:99:1011,0,824 1/1:2,47:50:54.99:1437,55,0 0/0:61,1:62:99:0,162,1977 13 99092998 . C T 1009 . AC=3;AF=0.036;AN=84;BaseQRankSum=5.959;DP=1212;Dels=0.00;FS=2.138;HRun=0;HaplotypeScore=0.8025;InbreedingCoeff=-0.0370;MQ=59.15;MQ0=0;MQRankSum=0.513;QD=12.01;ReadPosRankSum=-0.044 GT:AD:DP:GQ:PL 0/0:25,0:25:72.18:0,72,802 0/0:23,0:23:66.12:0,66,700 0/0:19,0:19:54.14:0,54,591 0/0:55,0:55:99:0,159,1844 0/0:68,0:68:99:0,202,2353 0/0:47,0:47:99:0,141,1630 0/0:37,0:37:99:0,105,1261 0/0:48,0:48:99:0,135,1640 0/0:29,0:29:84.19:0,84,895 0/1:13,10:23:99:273,0,353 0/0:25,0:25:72.16:0,72,765 0/0:21,0:21:57.14:0,57,611 0/0:24,0:24:69.17:0,69,765 0/0:27,0:27:81.20:0,81,889 0/0:52,0:52:99:0,141,1547 0/0:30,0:30:81.20:0,81,895 0/0:20,0:20:60.13:0,60,638 0/0:17,0:17:48.10:0,48,514 0/0:32,0:32:87.20:0,87,957 0/0:30,0:30:84.16:0,84,912 0/1:15,16:31:99:421,0,349 0/0:26,0:26:75.19:0,75,815 0/0:50,0:50:99:0,144,1710 0/0:32,0:32:93.26:0,93,1093 0/0:45,0:45:99:0,129,1553 0/0:33,0:33:99:0,99,1168 0/0:16,0:16:48.12:0,48,529 0/0:19,0:19:57.15:0,57,621 0/0:22,0:22:66.15:0,66,715 0/0:18,0:18:51.13:0,51,556 0/0:18,0:18:54.14:0,54,603 0/1:17,13:30:99:390,0,423 0/0:22,0:22:66.16:0,66,716 0/0:28,0:28:81.19:0,81,879 0/0:26,0:26:69.19:0,69,776 0/0:20,0:20:57.13:0,57,607 0/0:21,0:21:60.16:0,60,671 0/0:26,0:26:75.17:0,75,811 0/0:15,0:15:42.09:0,42,445 0/0:20,0:20:57.15:0,57,627 0/0:20,0:20:51.14:0,51,577 0/0:22,0:22:60.16:0,60,663 13 99108729 . G A 1180.89 . 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C T 59263.54 . 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C T 955.96 . 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C T 11052.60 . 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G A 19326.57 . 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T C 13734.05 . 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A G 46011.96 . 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A C 724.61 . 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G A 28190.22 . AC=16;AF=0.190;AN=84;BaseQRankSum=13.132;DP=5878;DS;Dels=0.00;FS=2.263;HRun=1;HaplotypeScore=2.1893;InbreedingCoeff=-0.0809;MQ=59.37;MQ0=0;MQRankSum=13.879;QD=13.78;ReadPosRankSum=-0.359 GT:AD:DP:GQ:PL 0/1:76,57:133:99:1508,0,2013 0/0:116,0:116:99:0,310,3624 0/0:124,0:124:99:0,319,3720 0/0:199,0:199:99:0,524,6648 0/0:187,0:187:99:0,481,6180 0/0:188,0:188:99:0,509,6528 0/0:153,1:154:99:0,378,5154 0/1:75,58:133:99:1725,0,2138 0/0:124,0:124:99:0,322,3825 0/0:100,0:100:99:0,271,3184 0/1:69,46:115:99:1293,0,1834 0/1:57,61:118:99:1701,0,1525 0/0:110,0:110:99:0,286,3361 1/1:3,113:116:99:3788,268,0 0/0:242,0:242:99:0,665,7569 0/0:83,0:83:99:0,229,2652 0/1:54,56:110:99:1619,0,1401 0/1:64,49:113:99:1374,0,1640 0/0:209,1:210:99:0,568,6534 0/1:104,88:192:99:2368,0,2751 0/0:214,0:216:99:0,544,6442 0/0:107,0:107:99:0,295,3437 0/1:98,81:179:99:2294,0,2842 0/0:168,0:168:99:0,430,5508 0/1:86,93:179:99:2594,0,2447 0/1:91,76:167:99:2116,0,2546 0/0:92,0:92:99:0,247,2862 0/0:132,0:132:99:0,358,4242 0/0:130,0:130:99:0,343,4050 0/0:121,0:121:99:0,310,3635 0/1:49,36:85:99:1046,0,1232 0/0:163,0:163:99:0,433,5066 0/0:112,0:112:99:0,304,3536 0/0:122,0:123:99:0,337,3922 0/0:133,2:135:99:0,278,3991 0/0:146,1:147:99:0,374,4619 0/1:102,65:167:99:1763,0,2591 0/1:56,48:104:99:1301,0,1462 0/1:72,62:134:99:1700,0,1974 0/0:125,1:126:99:0,346,3997 0/0:92,6:98:82.73:0,83,2745 0/0:124,2:126:99:0,254,3696 13 103450973 . T C 1356.72 . 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T C 74172.55 . AC=55;AF=0.655;AN=84;BaseQRankSum=-2.172;DP=3760;DS;Dels=0.00;FS=0.914;HRun=0;HaplotypeScore=1.3503;InbreedingCoeff=-0.2113;MQ=59.47;MQ0=0;MQRankSum=1.315;QD=20.85;ReadPosRankSum=-1.724 GT:AD:DP:GQ:PL 0/1:37,31:68:99:862,0,998 1/1:0,67:67:99:2087,177,0 0/1:27,43:70:99:1169,0,759 1/1:0,126:126:99:4309,349,0 1/1:0,112:112:99:3848,301,0 1/1:0,110:110:99:3853,301,0 1/1:0,102:102:99:3717,292,0 0/1:47,42:89:99:1201,0,1348 0/1:34,30:64:99:829,0,976 1/1:0,74:74:99:2411,214,0 0/1:52,43:95:99:1174,0,1439 1/1:0,83:83:99:2638,229,0 0/1:35,32:67:99:852,0,956 0/1:34,23:57:99:548,0,1018 0/1:129,102:231:99:2619,0,3577 0/1:26,28:54:99:713,0,779 0/1:47,37:84:99:1032,0,1303 1/1:0,66:66:99:2135,183,0 0/1:58,52:110:99:1348,0,1623 0/1:59,65:124:99:1777,0,1660 0/1:78,51:129:99:1268,0,2233 0/0:63,0:63:99:0,175,2124 1/1:0,126:126:99:4520,349,0 0/1:59,60:119:99:1800,0,1745 0/1:71,47:118:99:1304,0,2163 0/1:52,59:111:99:1844,0,1399 1/1:2,60:62:99:1944,130,0 1/1:0,61:61:99:2029,174,0 1/1:0,63:63:99:1947,162,0 0/0:81,1:82:99:0,196,2723 0/1:43,41:84:99:1111,0,1186 1/1:0,100:100:99:3303,277,0 0/1:52,43:95:99:1070,0,1448 0/1:42,38:80:99:1062,0,1143 0/0:56,0:57:99:0,153,1857 1/1:0,70:71:99:2281,193,0 1/1:0,106:107:99:3289,280,0 0/1:40,24:64:99:596,0,1178 0/1:48,44:92:99:1220,0,1334 0/1:41,39:80:99:1091,0,1083 0/1:31,33:64:99:909,0,879 1/1:1,76:77:99:2463,178,0 13 103524734 . C T 251.81 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.801;DP=2260;Dels=0.00;FS=1.503;HRun=1;HaplotypeScore=0.7703;InbreedingCoeff=-0.0120;MQ=59.52;MQ0=0;MQRankSum=2.438;QD=7.87;ReadPosRankSum=-1.194 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,123,1342 0/0:41,0:41:99:0,111,1257 0/0:53,0:53:99:0,144,1614 0/0:95,0:95:99:0,274,3284 0/0:62,0:62:99:0,171,2056 0/0:67,0:67:99:0,184,2231 0/0:54,0:54:99:0,153,1840 0/0:64,0:64:99:0,187,2234 0/0:51,0:51:99:0,135,1549 0/0:39,0:39:99:0,111,1197 0/0:38,0:38:99:0,108,1226 0/0:44,0:44:99:0,123,1344 0/0:48,1:49:99:0,108,1508 0/0:43,0:43:99:0,120,1366 0/0:153,0:153:99:0,412,4614 0/0:46,0:46:99:0,132,1456 0/0:57,0:57:99:0,156,1743 0/0:45,0:45:99:0,135,1471 0/0:69,0:69:99:0,198,2170 0/0:69,0:69:99:0,193,2181 0/0:62,0:62:99:0,165,1851 0/0:43,0:43:99:0,129,1391 0/0:83,0:83:99:0,229,2818 0/0:46,0:46:99:0,132,1621 0/0:55,0:55:99:0,138,1704 0/0:82,0:82:99:0,229,2783 0/0:26,0:26:75.20:0,75,840 0/0:51,0:51:99:0,144,1555 0/0:43,0:43:99:0,117,1310 0/0:38,0:38:99:0,105,1197 0/0:43,0:43:99:0,120,1346 0/0:70,0:70:99:0,177,2024 0/0:32,0:32:93.24:0,93,1025 0/0:46,0:46:99:0,132,1433 0/0:37,0:37:99:0,108,1179 0/0:60,0:60:99:0,162,1788 0/0:69,1:70:99:0,168,2141 0/0:43,0:43:99:0,108,1227 0/0:38,0:38:99:0,111,1220 0/0:43,0:43:99:0,126,1359 0/1:21,11:32:99:298,0,566 0/0:34,0:34:96.24:0,96,1069 13 109496813 . T C 5318.88 . AC=5;AF=0.060;AN=84;BaseQRankSum=-1.776;DP=3351;DS;Dels=0.00;FS=15.375;HRun=0;HaplotypeScore=1.7250;InbreedingCoeff=-0.0633;MQ=59.45;MQ0=0;MQRankSum=-0.180;QD=11.56;ReadPosRankSum=2.148 GT:AD:DP:GQ:PL 0/0:71,0:71:99:0,187,2294 0/0:56,0:56:99:0,150,1840 0/0:50,0:50:99:0,135,1644 0/1:71,50:121:99:1351,0,1995 0/0:104,0:105:99:0,271,3426 0/0:125,0:125:99:0,313,4053 0/0:98,0:99:99:0,244,3159 0/0:107,0:107:99:0,271,3421 0/0:62,0:62:99:0,175,2107 0/0:49,0:49:99:0,135,1650 0/0:56,0:56:99:0,144,1787 0/0:64,0:64:99:0,169,2064 0/0:67,0:68:99:0,181,2200 0/0:61,0:62:99:0,153,1935 0/0:242,0:243:99:0,593,7345 0/0:44,0:44:99:0,120,1470 0/1:39,26:65:99:628,0,1129 0/1:31,39:70:99:1047,0,782 0/0:105,1:107:99:0,280,3430 0/0:104,0:105:99:0,256,3187 0/0:98,0:99:99:0,253,3118 0/0:59,0:59:99:0,153,1847 0/1:86,63:149:99:1667,0,2259 0/0:92,0:92:99:0,220,2825 0/0:104,1:105:99:0,238,3330 0/0:82,1:83:99:0,167,2526 0/0:54,0:54:99:0,135,1696 0/0:63,0:63:99:0,172,2087 0/0:62,0:62:99:0,166,2042 0/0:55,0:55:99:0,138,1708 0/0:59,0:59:99:0,159,1968 0/0:91,0:91:99:0,232,2879 0/0:57,0:57:99:0,153,1856 0/0:59,0:59:99:0,159,1924 0/0:62,0:62:99:0,172,2087 0/1:31,24:55:99:624,0,933 0/0:116,0:118:99:0,295,3642 0/0:64,0:65:99:0,178,2123 0/0:56,0:56:99:0,156,1875 0/0:68,0:68:99:0,184,2240 0/0:54,0:54:99:0,147,1792 0/0:57,0:57:99:0,165,1995 13 109518578 . T C 13522.32 . 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G A 405.33 . 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C A 2344.24 . 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T G 64226.67 . 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T A 18663.98 . 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C T 17795.26 . AC=22;AF=0.262;AN=84;BaseQRankSum=-20.209;DP=2921;Dels=0.00;FS=4.777;HRun=0;HaplotypeScore=1.7240;InbreedingCoeff=0.0147;MQ=59.25;MQ0=0;MQRankSum=0.190;QD=13.72;ReadPosRankSum=0.681 GT:AD:DP:GQ:PL 0/1:33,14:47:99:318,0,1036 0/1:35,22:57:99:478,0,918 0/0:46,0:46:99:0,126,1536 0/0:187,0:187:99:0,472,6262 0/1:79,44:123:99:1090,0,2528 0/1:53,30:83:99:743,0,1657 0/0:69,0:69:99:0,187,2442 1/1:0,54:54:99:1618,132,0 0/0:58,0:58:99:0,159,1949 0/0:48,0:48:99:0,126,1613 0/0:59,1:60:99:0,123,1855 0/0:60,0:60:99:0,172,2095 0/0:44,0:44:99:0,117,1483 0/1:29,19:48:99:504,0,810 0/0:197,0:198:99:0,503,6329 0/1:22,16:38:99:419,0,677 0/0:51,0:51:99:0,135,1708 0/1:33,28:61:99:711,0,897 1/1:0,70:71:99:2174,183,0 0/1:67,34:101:99:825,0,1852 0/0:95,0:95:99:0,247,3114 0/0:62,0:63:99:0,171,2110 0/1:80,58:138:99:1590,0,2436 0/1:27,18:46:99:433,0,830 1/1:0,76:76:99:2500,205,0 0/0:78,0:78:99:0,202,2676 0/0:54,0:54:99:0,147,1849 0/0:53,0:53:99:0,150,1864 0/1:27,14:41:99:354,0,873 0/0:60,0:61:99:0,169,2108 0/0:52,0:52:99:0,141,1765 0/1:58,65:123:99:1681,0,1651 0/0:57,0:57:99:0,147,1821 0/1:28,19:47:99:464,0,811 0/1:20,25:46:99:702,0,592 0/1:29,26:55:99:733,0,941 0/0:107,0:107:99:0,286,3565 0/0:43,1:44:83.91:0,84,1387 0/1:25,17:42:99:458,0,746 0/0:52,0:52:99:0,147,1842 0/0:39,0:39:99:0,111,1395 0/0:48,0:48:99:0,120,1505 13 110833702 . C T 8022.03 . 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C G 408.85 . AC=21;AF=0.525;AN=40;BaseQRankSum=3.688;DP=29;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;InbreedingCoeff=0.2470;MQ=57.73;MQ0=0;MQRankSum=0.851;QD=22.71;ReadPosRankSum=0.633 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:39,3,0 1/1:0,1:1:3.01:39,3,0 0/0:1,0:1:3.01:0,3,33 ./. ./. ./. ./. 1/1:0,1:1:3.01:36,3,0 0/0:1,0:1:3.01:0,3,34 1/1:0,1:1:3.01:39,3,0 ./. ./. 1/1:0,1:1:3.01:36,3,0 ./. 0/1:1,2:3:24.41:60,0,24 ./. ./. 0/0:1,0:1:3.01:0,3,32 0/0:3,0:3:9.03:0,9,103 0/0:1,0:1:3.01:0,3,33 1/1:0,2:2:6.02:75,6,0 1/1:0,2:2:3.01:45,3,0 0/0:1,0:1:3.01:0,3,37 ./. ./. ./. 1/1:0,1:1:3.01:37,3,0 ./. 1/1:0,1:1:3.01:37,3,0 ./. 0/0:1,0:1:3:0,3,27 ./. ./. 0/1:2,1:3:29.55:30,0,54 ./. 0/0:2,0:2:6.02:0,6,65 ./. ./. ./. ./. 0/1:0,1:1:1.76:33,3,0 13 111077197 . G A 90765.38 . AC=81;AF=0.964;AN=84;BaseQRankSum=5.158;DP=2752;Dels=0.00;FS=16.521;HRun=0;HaplotypeScore=1.3576;InbreedingCoeff=-0.0370;MQ=59.15;MQ0=0;MQRankSum=1.059;QD=32.98;ReadPosRankSum=0.775 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1500,120,0 1/1:1,34:35:99:1208,99,0 1/1:1,44:45:96.77:1497,97,0 1/1:0,158:158:99:5395,421,0 1/1:0,133:133:99:4755,370,0 1/1:0,128:128:99:4385,340,0 1/1:0,90:90:99:3103,241,0 1/1:0,109:109:99:3750,292,0 1/1:0,57:57:99:1991,159,0 1/1:0,36:36:99:1222,99,0 1/1:0,43:43:99:1580,129,0 1/1:0,40:40:99:1409,114,0 1/1:0,20:20:60.18:731,60,0 0/1:20,25:45:99:718,0,505 0/1:69,62:132:99:1841,0,1838 1/1:0,48:48:99:1673,138,0 0/1:15,17:32:99:515,0,414 1/1:0,43:43:99:1483,120,0 1/1:2,82:84:99:2806,197,0 1/1:0,86:86:99:2893,232,0 1/1:0,89:89:99:2925,232,0 1/1:0,58:58:99:1951,156,0 1/1:0,157:157:99:5408,424,0 1/1:0,89:89:99:2963,226,0 1/1:0,96:97:99:3400,265,0 1/1:0,76:76:99:2547,202,0 1/1:0,37:37:99:1322,108,0 1/1:0,25:25:75.22:901,75,0 1/1:0,40:40:99:1372,111,0 1/1:0,43:43:99:1531,123,0 1/1:0,52:52:99:1771,141,0 1/1:0,94:94:99:3106,247,0 1/1:0,50:50:99:1658,135,0 1/1:0,41:41:99:1455,117,0 1/1:0,41:41:99:1458,120,0 1/1:0,51:51:99:1805,144,0 1/1:0,93:93:99:3266,262,0 1/1:0,52:52:99:1833,150,0 1/1:0,54:54:99:1832,150,0 1/1:0,38:38:99:1313,108,0 1/1:0,26:26:75.20:893,75,0 1/1:0,43:43:99:1597,129,0 13 111082772 . G T 819.22 . 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T C 32787.78 . 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G A 23399.26 . AC=22;AF=0.262;AN=84;BaseQRankSum=-4.346;DP=3270;Dels=0.00;FS=21.319;HRun=0;HaplotypeScore=4.4855;InbreedingCoeff=0.0147;MQ=58.72;MQ0=0;MQRankSum=3.776;QD=15.15;ReadPosRankSum=0.070 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,156,1743 0/0:55,0:55:99:0,135,1506 0/0:40,0:40:99:0,102,1130 0/1:97,60:159:99:1486,0,2643 0/0:193,0:194:99:0,514,6276 0/1:58,58:117:99:1514,0,1508 1/1:0,85:86:99:2625,235,0 0/0:129,1:130:99:0,323,4199 0/0:49,1:50:99:0,111,1557 0/0:46,0:47:99:0,126,1406 0/0:40,0:40:99:0,117,1344 0/0:43,0:44:99:0,114,1279 0/0:47,0:48:99:0,123,1370 0/0:46,0:47:99:0,129,1467 0/0:184,0:185:99:0,493,5569 0/1:20,30:50:99:785,0,369 0/0:44,0:44:99:0,117,1294 0/0:58,0:58:99:0,153,1696 0/0:88,0:88:99:0,217,2466 0/0:125,0:126:99:0,316,3572 0/1:33,32:67:99:850,0,775 0/1:46,41:88:99:979,0,1031 1/1:0,167:171:99:5158,463,0 0/0:109,0:109:99:0,304,3648 0/0:138,1:140:99:0,339,4380 0/1:65,49:114:99:1127,0,1760 0/0:47,0:47:99:0,132,1521 0/0:49,0:49:99:0,135,1472 0/1:19,22:41:99:599,0,510 0/0:52,0:53:99:0,132,1486 0/0:43,0:43:99:0,111,1185 0/1:49,64:117:99:1484,0,1213 0/1:38,33:73:99:843,0,1010 0/1:28,21:49:99:495,0,703 0/1:33,25:58:99:479,0,825 0/1:30,25:55:99:565,0,662 0/1:46,49:96:99:1180,0,1194 1/1:0,50:50:99:1438,132,0 0/0:35,0:35:96.23:0,96,1063 0/1:27,27:56:99:694,0,655 0/1:27,22:50:99:557,0,659 0/1:27,21:48:99:542,0,633 13 111125481 . C A 5.46 . AC=1;AF=0.012;AN=82;BaseQRankSum=-1.571;DP=197;Dels=0.00;FS=2.760;HRun=0;HaplotypeScore=0.1533;InbreedingCoeff=-0.0712;MQ=58.97;MQ0=0;MQRankSum=-0.796;QD=0.68;ReadPosRankSum=1.393 GT:AD:DP:GQ:PL 0/0:4,0:4:12.04:0,12,154 0/0:2,0:2:6.02:0,6,69 ./. 0/0:4,0:4:12.03:0,12,140 0/0:6,0:6:18.06:0,18,244 0/0:1,0:1:3.01:0,3,41 0/0:7,0:7:21.07:0,21,278 0/0:5,0:5:12.03:0,12,148 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.03:0,9,117 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.02:0,6,67 0/0:5,0:5:15.04:0,15,162 0/0:4,0:4:12:0,12,124 0/0:21,0:21:48.13:0,48,597 0/0:3,0:3:9.03:0,9,113 0/0:9,0:10:21.03:0,21,235 0/0:7,0:7:15.05:0,15,188 0/0:3,0:3:9.03:0,9,111 0/0:7,1:8:18.06:0,18,226 0/0:9,0:9:18.05:0,18,233 0/0:3,0:3:9.03:0,9,113 0/0:6,0:6:18.05:0,18,225 0/0:5,0:5:9.02:0,9,108 0/0:6,0:6:9.03:0,9,125 0/0:3,0:3:6.02:0,6,77 0/0:1,0:1:3.01:0,3,39 0/0:5,0:5:12.04:0,12,149 0/0:3,0:3:9.03:0,9,113 0/0:2,0:2:3.01:0,3,45 0/0:5,0:5:12.04:0,12,163 0/1:6,2:8:49.44:49,0,153 0/0:3,0:3:9.02:0,9,104 0/0:6,0:6:18.05:0,18,216 0/0:2,0:2:6.02:0,6,79 0/0:4,0:4:9.03:0,9,117 0/0:4,0:5:9:0,9,95 0/0:5,0:5:15.04:0,15,173 0/0:3,0:3:9.03:0,9,110 0/0:2,0:2:6.02:0,6,75 0/0:6,0:6:15.03:0,15,177 0/0:8,0:8:24.07:0,24,296 13 111155773 . T C 13440.81 . AC=84;AF=1.000;AN=84;DP=438;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.3198;InbreedingCoeff=-0.0071;MQ=58.43;MQ0=0;QD=30.69 GT:AD:DP:GQ:PL 1/1:0,15:15:36.08:415,36,0 1/1:0,3:3:9.03:102,9,0 1/1:0,6:6:15.04:175,15,0 1/1:0,25:25:69.20:843,69,0 1/1:0,24:24:60.17:740,60,0 1/1:0,18:18:42.09:517,42,0 1/1:0,11:11:30.09:383,30,0 1/1:0,14:14:30.08:367,30,0 1/1:0,12:12:36.10:407,36,0 1/1:0,11:11:27.07:318,27,0 1/1:0,9:9:24.06:266,24,0 1/1:0,6:6:18.05:200,18,0 1/1:0,8:8:21.05:228,21,0 1/1:0,12:12:33.09:384,33,0 1/1:0,19:19:45.10:504,45,0 1/1:0,8:8:24.06:264,24,0 1/1:0,5:5:15.04:169,15,0 1/1:0,5:5:15.04:165,15,0 1/1:0,12:12:33.09:375,33,0 1/1:0,11:11:30.08:348,30,0 1/1:0,12:12:33.06:358,33,0 1/1:0,7:7:15.04:169,15,0 1/1:0,25:25:60.16:738,60,0 1/1:0,8:8:24.07:275,24,0 1/1:0,9:9:24.07:289,24,0 1/1:0,5:5:9.03:113,9,0 1/1:0,6:6:18.04:200,18,0 1/1:0,8:8:21.06:259,21,0 1/1:0,7:7:18.05:219,18,0 1/1:0,8:8:24.07:284,24,0 1/1:0,11:11:30.08:346,30,0 1/1:0,8:8:21.03:235,21,0 1/1:0,10:10:27.08:322,27,0 1/1:0,9:9:27.06:297,27,0 1/1:0,11:11:30.07:328,30,0 1/1:0,14:14:39.08:441,39,0 1/1:0,9:9:24.07:276,24,0 1/1:0,6:6:18.05:219,18,0 1/1:0,8:8:21.06:249,21,0 1/1:0,9:9:21.05:249,21,0 1/1:0,3:3:9.02:98,9,0 1/1:0,11:11:27.07:306,27,0 13 111155779 . G A 2831.27 . 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AC=46;AF=0.548;AN=84;BaseQRankSum=5.976;DP=1827;Dels=0.00;FS=4.705;HRun=0;HaplotypeScore=1.1737;InbreedingCoeff=-0.0572;MQ=59.05;MQ0=0;MQRankSum=0.911;QD=17.66;ReadPosRankSum=-1.605 GT:AD:DP:GQ:PL 0/1:16,16:32:99:448,0,424 1/1:0,19:19:57.18:721,57,0 1/1:0,22:22:60.18:745,60,0 0/1:52,51:103:99:1558,0,1544 0/1:41,31:72:99:938,0,1341 0/1:43,39:83:99:1151,0,1319 0/1:37,15:52:99:432,0,1131 0/0:77,0:77:99:0,196,2589 1/1:0,28:28:75.24:984,75,0 1/1:0,28:28:81.21:977,81,0 1/1:0,21:21:57.18:721,57,0 0/0:23,0:23:69.21:0,69,832 0/0:25,0:25:72.22:0,72,878 0/1:17,16:33:99:450,0,480 0/1:52,42:94:99:1137,0,1450 0/1:25,20:45:99:518,0,709 0/0:45,0:45:99:0,117,1446 1/1:0,29:29:78.25:1005,78,0 0/1:29,22:51:99:595,0,853 0/1:35,23:58:99:637,0,931 1/1:0,60:60:99:2015,160,0 0/1:27,16:43:99:450,0,791 0/1:48,26:74:99:773,0,1537 0/0:51,1:52:99:0,141,1900 0/1:30,26:56:99:777,0,908 0/1:23,21:44:99:701,0,684 0/1:16,7:23:99:165,0,494 1/1:0,29:29:81.26:1019,81,0 0/0:23,0:23:60.18:0,60,714 0/1:10,15:25:99:422,0,260 1/1:0,23:23:66.21:849,66,0 0/1:41,27:68:99:811,0,1121 0/1:27,17:45:99:493,0,783 0/1:22,15:37:99:417,0,587 0/1:16,14:30:99:413,0,448 1/1:0,24:24:66.21:841,66,0 0/0:77,0:78:99:0,214,2603 0/1:23,9:32:99:257,0,674 0/0:29,0:29:84.26:0,84,1031 1/1:0,32:32:90.27:1110,90,0 0/1:15,16:31:99:448,0,418 1/1:0,29:29:84.27:1068,84,0 13 113530199 . G A 4906.50 . AC=10;AF=0.119;AN=84;BaseQRankSum=-1.606;DP=1946;Dels=0.00;FS=6.848;HRun=0;HaplotypeScore=1.2407;InbreedingCoeff=0.0919;MQ=58.95;MQ0=0;MQRankSum=0.816;QD=13.71;ReadPosRankSum=-0.382 GT:AD:DP:GQ:PL 0/1:21,18:39:99:522,0,542 0/0:35,0:35:96.27:0,96,1123 0/0:33,0:33:87.26:0,87,1045 0/0:90,0:90:99:0,265,3222 0/0:74,0:74:99:0,220,2750 0/0:48,0:48:99:0,138,1705 0/1:30,28:58:99:803,0,905 0/0:61,0:61:99:0,175,2148 0/0:41,0:41:99:0,117,1361 0/0:38,0:38:99:0,102,1210 0/0:33,0:33:93.26:0,93,1094 0/1:23,19:43:99:498,0,673 0/0:36,0:36:99:0,105,1192 0/1:20,17:37:99:507,0,495 0/0:121,0:121:99:0,334,3947 0/0:41,0:41:99:0,117,1315 0/1:27,20:47:99:577,0,721 0/0:25,0:25:72.21:0,72,860 0/0:38,0:38:99:0,108,1218 0/0:64,0:64:99:0,171,2017 0/0:38,0:38:99:0,108,1254 0/0:30,0:30:87.24:0,87,999 0/0:102,0:102:99:0,298,3735 0/0:63,0:63:99:0,184,2249 0/0:72,0:72:99:0,208,2618 0/0:35,0:35:99:0,105,1281 1/1:0,17:17:51.14:586,51,0 0/1:23,19:42:99:544,0,640 0/1:20,17:37:99:455,0,552 0/0:49,0:49:99:0,132,1523 0/0:41,0:41:99:0,114,1357 0/0:54,0:54:99:0,147,1735 0/0:42,0:42:99:0,114,1328 0/0:36,1:37:73.06:0,73,1205 0/0:43,0:43:99:0,120,1435 0/0:29,1:30:51.12:0,51,955 0/0:43,0:44:99:0,120,1350 0/0:32,0:32:87.20:0,87,951 0/0:28,0:28:84.22:0,84,953 0/0:36,0:36:99:0,105,1224 0/0:34,0:34:99:0,99,1166 0/1:22,15:37:99:415,0,642 13 113720476 . C T 10371.11 . AC=23;AF=0.274;AN=84;BaseQRankSum=6.126;DP=1460;Dels=0.00;FS=4.976;HRun=0;HaplotypeScore=1.6969;InbreedingCoeff=-0.2573;MQ=59.11;MQ0=1;MQRankSum=0.263;QD=13.54;ReadPosRankSum=-1.497 GT:AD:DP:GQ:PL 0/1:8,16:24:99:441,0,169 0/1:17,21:39:99:647,0,422 0/0:22,0:22:63.17:0,63,730 0/1:47,26:73:99:644,0,1227 0/1:33,33:66:99:924,0,894 0/0:47,0:47:99:0,129,1619 0/1:19,13:32:99:329,0,485 0/0:44,0:44:99:0,114,1439 0/0:31,0:31:78.22:0,78,910 0/1:13,19:32:99:501,0,240 0/0:25,0:25:69.18:0,69,793 0/1:7,8:15:99:244,0,185 0/0:29,0:29:78.20:0,78,888 1/1:0,31:31:81.25:1006,81,0 0/1:47,44:91:99:1137,0,1193 0/1:14,20:34:99:638,0,394 0/0:24,0:24:69.18:0,69,790 0/0:19,0:19:54.15:0,54,626 0/0:47,0:47:99:0,114,1322 0/0:46,0:46:99:0,123,1389 0/1:26,16:42:99:412,0,674 0/1:15,16:31:99:426,0,368 0/0:92,0:92:99:0,214,2767 0/1:22,9:31:99:198,0,657 0/0:38,0:39:96.30:0,96,1244 0/1:28,8:36:99:210,0,717 0/1:7,8:15:99:252,0,189 0/1:18,19:37:99:483,0,486 0/1:13,13:26:99:414,0,301 0/0:15,0:15:42.10:0,42,477 0/1:16,13:29:99:279,0,452 0/0:46,0:46:99:0,123,1396 0/0:29,0:29:72.19:0,72,854 0/1:11,8:19:99:165,0,334 0/0:26,0:26:72.19:0,72,820 0/1:12,7:19:99:183,0,265 0/0:43,0:43:99:0,111,1319 0/0:20,0:20:54.15:0,54,610 0/0:31,0:31:78.19:0,78,891 0/1:5,15:20:86.93:494,0,87 0/0:19,0:19:39.09:0,39,444 0/1:12,12:24:99:345,0,312 13 113720477 . G A 319.88 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.806;DP=1449;Dels=0.00;FS=12.282;HRun=0;HaplotypeScore=1.4030;InbreedingCoeff=-0.0121;MQ=59.09;MQ0=1;MQRankSum=1.476;QD=9.41;ReadPosRankSum=0.768 GT:AD:DP:GQ:PL 0/0:23,0:23:60.18:0,60,747 0/0:39,0:39:99:0,105,1300 0/0:22,0:22:57.15:0,57,650 0/0:71,0:71:99:0,172,2249 0/0:65,0:65:99:0,172,2187 0/0:47,0:47:99:0,120,1486 0/0:32,0:32:75.25:0,75,1022 0/0:43,0:43:99:0,105,1344 0/0:31,0:31:78.21:0,78,945 0/0:31,0:31:75.22:0,75,930 0/0:25,0:25:69.19:0,69,823 0/0:15,0:15:42.11:0,42,487 0/0:28,0:28:75.22:0,75,903 0/0:31,0:31:84.26:0,84,1045 0/0:89,0:91:99:0,229,2786 0/1:20,14:34:99:366,0,638 0/0:25,0:25:69.18:0,69,803 0/0:18,0:18:48.13:0,48,557 0/0:48,0:48:99:0,108,1279 0/0:46,0:46:99:0,126,1497 0/0:42,0:42:99:0,120,1426 0/0:29,0:29:81.24:0,81,995 0/0:91,0:91:99:0,217,2851 0/0:31,0:31:81.23:0,81,996 0/0:39,0:39:93.28:0,93,1181 0/0:36,0:36:81.26:0,81,1084 0/0:16,0:16:48.12:0,48,551 0/0:37,0:37:93.28:0,93,1134 0/0:26,0:26:66.20:0,66,816 0/0:15,0:15:39.12:0,39,472 0/0:29,0:29:75.19:0,75,903 0/0:45,0:45:99:0,120,1446 0/0:29,0:29:75.21:0,75,898 0/0:19,0:19:54.16:0,54,640 0/0:26,0:26:75.17:0,75,846 0/0:17,0:18:42.12:0,42,510 0/0:43,0:44:99:0,99,1148 0/0:19,0:19:54.16:0,54,630 0/0:31,0:31:81.24:0,81,984 0/0:19,0:19:54.17:0,54,685 0/0:18,0:19:39.12:0,39,477 0/0:24,0:24:66.18:0,66,754 13 113735585 . G A 194.70 . AC=2;AF=0.024;AN=82;BaseQRankSum=0.224;DP=325;Dels=0.00;FS=1.353;HRun=0;HaplotypeScore=0.3056;InbreedingCoeff=-0.0390;MQ=59.14;MQ0=0;MQRankSum=0.996;QD=14.98;ReadPosRankSum=-0.377 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,171 0/0:4,0:4:12.03:0,12,139 0/0:8,0:8:21.07:0,21,268 0/0:17,0:17:45.14:0,45,572 0/0:9,0:9:21.06:0,21,271 0/0:5,0:5:12.04:0,12,163 0/0:7,0:7:21.07:0,21,273 0/0:9,0:9:21.07:0,21,281 0/1:1,5:6:22.75:135,0,23 0/1:3,4:7:82.72:122,0,83 0/0:4,0:4:9.01:0,9,98 0/0:11,0:11:27.05:0,27,296 0/0:2,0:2:6.02:0,6,67 0/0:8,0:8:21.06:0,21,255 0/0:21,0:21:48.13:0,48,569 0/0:6,0:6:15.04:0,15,180 0/0:5,0:5:15.04:0,15,175 0/0:4,0:4:12.04:0,12,142 0/0:6,0:6:18.05:0,18,211 0/0:11,0:11:30.09:0,30,350 0/0:13,0:13:33.10:0,33,401 0/0:6,0:6:15.04:0,15,178 0/0:21,0:21:51.16:0,51,646 0/0:9,0:9:21.07:0,21,281 0/0:15,0:15:36.11:0,36,470 0/0:4,0:4:12.04:0,12,141 0/0:6,0:6:18.06:0,18,219 0/0:11,0:11:33.09:0,33,371 0/0:7,0:7:18.05:0,18,211 0/0:4,0:4:12.03:0,12,137 0/0:4,0:4:12.04:0,12,142 0/0:15,0:15:33.10:0,33,432 0/0:6,0:6:18.02:0,18,184 0/0:9,0:9:24.06:0,24,279 ./. 0/0:6,0:6:15.04:0,15,166 0/0:8,0:8:21.06:0,21,246 0/0:4,0:4:12.04:0,12,141 0/0:2,0:2:6.02:0,6,69 0/0:10,0:10:27.08:0,27,311 0/0:3,0:3:9.03:0,9,106 0/0:7,0:7:21.06:0,21,243 13 113750905 . C G 95.50 . AC=6;AF=0.075;AN=80;BaseQRankSum=-2.417;DP=269;Dels=0.00;FS=12.319;HRun=2;HaplotypeScore=0.2154;InbreedingCoeff=0.1079;MQ=58.60;MQ0=0;MQRankSum=0.560;QD=5.31;ReadPosRankSum=0.509 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,174 0/0:4,0:4:9.03:0,9,108 0/0:3,0:3:6.02:0,6,76 0/0:23,0:23:57.15:0,57,690 0/0:14,0:14:39.12:0,39,490 0/0:14,0:14:24.07:0,24,292 0/0:5,0:5:15.05:0,15,189 0/0:8,0:8:24.07:0,24,290 0/0:4,0:4:12.04:0,12,142 0/0:7,0:7:18.05:0,18,218 0/0:5,0:5:15.02:0,15,167 0/1:1,1:2:23.61:26,0,24 0/1:0,3:3:0.51:97,9,0 0/0:2,0:2:6.02:0,6,76 0/0:6,0:6:12.03:0,12,136 0/0:9,0:9:24.07:0,24,277 0/0:5,0:5:12.03:0,12,135 0/0:3,0:3:9.03:0,9,104 0/0:6,0:6:18.05:0,18,209 0/0:9,0:9:24.05:0,24,251 0/0:7,0:7:12.04:0,12,154 0/0:6,0:6:18.05:0,18,217 0/0:16,0:16:42.12:0,42,498 0/0:10,0:10:24.07:0,24,307 0/0:9,0:9:24.04:0,24,277 0/0:2,0:2:3.01:0,3,40 0/0:7,0:7:18.03:0,18,197 ./. 0/0:3,0:3:9.02:0,9,102 0/0:4,0:4:12.03:0,12,134 0/1:2,1:3:23.48:23,0,56 0/0:10,0:10:24.06:0,24,291 0/0:12,0:12:33.09:0,33,385 0/0:4,0:4:6.02:0,6,70 0/0:4,0:4:12.02:0,12,127 0/0:11,0:11:27.07:0,27,312 0/0:5,0:6:15.04:0,15,179 0/1:3,1:4:18.56:19,0,100 ./. 0/1:3,1:4:13.66:14,0,90 0/1:1,1:2:24.58:25,0,27 0/0:4,0:4:12.03:0,12,133 13 113833282 . T C 600.24 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.529;DP=2285;Dels=0.00;FS=1.850;HRun=0;HaplotypeScore=0.9508;InbreedingCoeff=-0.0120;MQ=59.34;MQ0=0;MQRankSum=-0.003;QD=13.05;ReadPosRankSum=-1.604 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,126,1525 0/0:51,0:51:99:0,144,1719 0/1:21,25:46:99:646,0,556 0/0:74,0:74:99:0,187,2345 0/0:82,0:82:99:0,220,2739 0/0:66,0:66:99:0,178,2246 0/0:69,0:69:99:0,172,2171 0/0:54,0:54:99:0,132,1682 0/0:49,0:49:99:0,144,1688 0/0:37,0:37:99:0,102,1235 0/0:50,0:50:99:0,135,1639 0/0:31,0:31:87.22:0,87,1029 0/0:41,1:42:99:0,114,1365 0/0:40,0:40:99:0,117,1404 0/0:171,0:171:99:0,451,5454 0/0:25,0:25:75.23:0,75,895 0/0:57,0:57:99:0,153,1873 0/0:49,0:49:99:0,138,1653 0/0:75,0:75:99:0,205,2486 0/0:58,0:58:99:0,153,1881 0/0:60,0:60:99:0,159,1928 0/0:26,0:26:72.22:0,72,869 0/0:65,0:65:99:0,163,2040 0/0:49,0:49:99:0,132,1638 0/0:49,0:49:99:0,123,1552 0/0:41,0:41:99:0,105,1307 0/0:35,0:35:96.29:0,96,1166 0/0:51,0:51:99:0,150,1804 0/0:44,0:44:99:0,129,1537 0/0:54,0:54:99:0,147,1795 0/0:49,0:49:99:0,123,1494 0/0:50,0:50:99:0,132,1610 0/0:57,0:58:99:0,144,1767 0/0:55,0:55:99:0,150,1798 0/0:63,0:63:99:0,178,2141 0/0:58,0:58:99:0,153,1836 0/0:61,0:61:99:0,169,2047 0/0:39,0:39:99:0,111,1322 0/0:39,0:39:99:0,102,1246 0/0:52,1:53:99:0,150,1809 0/0:48,0:48:99:0,126,1530 0/0:66,0:66:99:0,181,2199 13 113965176 . C A 93716.18 . AC=84;AF=1.000;AN=84;BaseQRankSum=2.448;DP=2742;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.2114;InbreedingCoeff=-0.0000;MQ=59.04;MQ0=0;MQRankSum=1.042;QD=34.18;ReadPosRankSum=1.401 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1614,132,0 1/1:0,67:67:99:2228,178,0 1/1:0,56:56:99:1899,150,0 1/1:0,88:88:99:2897,226,0 1/1:0,81:81:99:2848,226,0 1/1:0,81:81:99:2953,226,0 1/1:0,79:79:99:2819,217,0 1/1:0,57:57:99:1971,156,0 1/1:0,49:49:99:1690,138,0 1/1:0,59:59:99:1993,159,0 1/1:0,53:53:99:1788,144,0 1/1:1,50:51:99:1804,144,0 1/1:0,44:44:99:1452,117,0 1/1:0,53:53:99:1777,147,0 1/1:0,197:197:99:6305,506,0 1/1:1,49:50:99:1714,138,0 1/1:0,63:63:99:2269,184,0 1/1:0,49:49:99:1790,144,0 1/1:1,75:76:99:2563,205,0 1/1:0,87:87:99:2940,238,0 1/1:0,81:81:99:2688,217,0 1/1:0,68:68:99:2198,178,0 1/1:0,105:105:99:3462,268,0 1/1:0,71:71:99:2503,196,0 1/1:0,72:72:99:2558,196,0 1/1:0,62:62:99:2252,178,0 1/1:0,36:36:99:1240,99,0 1/1:0,56:56:99:1920,153,0 1/1:0,33:33:87.27:1086,87,0 1/1:0,55:55:99:1974,162,0 1/1:1,41:42:99:1436,114,0 1/1:0,76:76:99:2611,208,0 1/1:1,72:73:99:2395,193,0 1/1:0,61:61:99:2108,169,0 1/1:0,55:55:99:1934,156,0 1/1:0,71:71:99:2297,184,0 1/1:0,70:71:99:2385,193,0 1/1:0,43:43:99:1484,120,0 1/1:0,53:53:99:1940,156,0 1/1:0,67:67:99:2315,190,0 1/1:0,61:61:99:2015,165,0 1/1:0,44:44:99:1600,129,0 13 114079397 . G A 2953.37 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.903;DP=6570;DS;Dels=0.00;FS=4.177;HRun=0;HaplotypeScore=1.9651;InbreedingCoeff=-0.0244;MQ=59.48;MQ0=0;MQRankSum=-0.150;QD=10.62;ReadPosRankSum=0.504 GT:AD:DP:GQ:PL 0/0:118,0:118:99:0,328,3944 0/0:108,0:108:99:0,298,3494 0/0:125,0:125:99:0,331,4050 0/0:247,0:247:99:0,662,8522 0/0:250,0:250:99:0,638,8452 0/0:250,0:250:99:0,629,8158 0/0:231,0:231:99:0,569,7444 0/0:250,0:250:99:0,641,8401 0/0:126,0:126:99:0,334,4080 0/0:134,0:134:99:0,352,4304 0/0:130,2:132:99:0,314,4086 0/0:123,0:123:99:0,328,3932 0/0:105,0:105:99:0,286,3501 0/0:139,0:139:99:0,367,4474 0/0:248,0:248:99:0,677,7972 0/0:103,0:103:99:0,289,3501 0/0:120,1:121:99:0,331,3950 0/0:110,0:110:99:0,301,3650 0/0:193,0:193:99:0,511,6183 0/0:188,0:188:99:0,475,5789 0/0:198,0:198:99:0,502,6154 0/0:102,0:102:99:0,265,3230 0/0:250,0:250:99:0,671,8733 0/0:216,0:216:99:0,554,7164 0/0:245,0:245:99:0,641,8368 0/0:250,0:250:99:0,641,8326 0/0:110,0:110:99:0,286,3496 0/0:111,0:111:99:0,307,3718 0/0:107,0:107:99:0,295,3591 0/0:131,0:131:99:0,334,4142 0/0:101,0:101:99:0,271,3264 0/0:160,0:161:99:0,388,4783 0/0:140,0:140:99:0,367,4499 0/0:118,0:119:99:0,316,3796 0/0:109,0:109:99:0,292,3546 0/0:149,0:149:99:0,394,4819 0/1:87,73:160:99:2021,0,2317 0/0:121,0:121:99:0,331,4019 0/1:80,38:118:99:995,0,2256 0/0:119,0:119:99:0,322,3915 0/0:112,0:112:99:0,295,3583 0/0:140,0:140:99:0,388,4711 13 114107571 . A G 863.77 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.024;DP=2192;Dels=0.00;FS=24.606;HRun=0;HaplotypeScore=2.8206;InbreedingCoeff=-0.0244;MQ=58.91;MQ0=0;MQRankSum=2.003;QD=10.93;ReadPosRankSum=-0.566 GT:AD:DP:GQ:PL 0/0:38,0:39:99:0,102,1188 0/0:49,0:49:99:0,135,1570 0/0:33,0:33:87.23:0,87,990 0/0:101,0:103:99:0,271,3197 0/0:85,0:85:99:0,232,2748 0/0:78,1:81:99:0,211,2523 0/0:61,0:62:99:0,162,1953 0/0:61,0:61:99:0,162,1924 0/0:41,0:41:99:0,105,1227 0/0:43,0:43:99:0,117,1367 0/0:43,1:44:99:0,126,1481 0/0:37,0:37:99:0,105,1234 0/0:43,0:43:99:0,114,1308 0/0:45,0:45:99:0,123,1470 0/0:137,1:142:99:0,320,4010 0/0:49,0:49:99:0,138,1620 0/0:43,0:44:99:0,117,1402 0/0:41,0:41:99:0,120,1390 0/0:45,0:46:99:0,126,1514 0/0:89,0:89:99:0,244,2882 0/0:56,0:56:99:0,147,1755 0/0:49,0:49:99:0,132,1522 0/0:115,0:116:99:0,307,3633 0/0:33,0:33:87.23:0,87,1029 0/0:56,0:58:99:0,156,1825 0/0:51,0:51:99:0,132,1547 0/0:21,0:21:63.18:0,63,734 0/0:45,0:45:99:0,126,1483 0/0:38,0:38:96.28:0,96,1141 0/0:35,0:35:99:0,105,1192 0/0:37,0:37:99:0,105,1229 0/0:59,0:59:99:0,150,1750 0/0:39,0:39:99:0,111,1263 0/0:50,0:51:99:0,138,1620 0/0:53,0:53:99:0,147,1720 0/0:45,0:46:99:0,120,1401 0/0:41,0:41:99:0,108,1283 0/0:48,0:48:99:0,132,1567 0/0:32,0:32:87.27:0,87,1050 0/1:21,21:42:99:517,0,537 0/0:28,0:28:69.21:0,69,838 0/1:18,19:37:99:409,0,491 13 114154419 . G A 9939.21 . AC=10;AF=0.119;AN=84;BaseQRankSum=-11.816;DP=3527;Dels=0.00;FS=2.690;HRun=2;HaplotypeScore=1.0851;InbreedingCoeff=-0.1351;MQ=59.27;MQ0=1;MQRankSum=1.801;QD=12.66;ReadPosRankSum=-1.182 GT:AD:DP:GQ:PL 0/0:83,0:83:99:0,208,2698 0/0:63,0:63:99:0,172,2200 0/1:39,20:59:99:534,0,1095 0/0:113,0:113:99:0,280,3817 0/0:103,0:103:99:0,268,3657 0/1:55,67:122:99:1831,0,1644 0/1:55,32:87:99:813,0,1690 0/0:97,0:97:99:0,256,3485 0/0:63,0:63:99:0,181,2315 0/0:69,0:69:99:0,187,2376 0/0:68,0:68:99:0,184,2347 0/0:68,0:68:99:0,175,2227 0/0:58,0:58:99:0,141,1823 0/1:26,28:54:99:834,0,798 0/0:209,0:210:99:0,518,6788 0/1:27,24:51:99:694,0,831 0/0:60,0:60:99:0,168,2130 0/0:74,0:75:99:0,205,2619 0/0:133,0:133:99:0,349,4432 0/0:125,0:125:99:0,316,4104 0/0:118,0:118:99:0,286,3760 0/0:73,0:73:99:0,193,2455 0/1:70,58:128:99:1581,0,2102 0/1:45,44:89:99:1246,0,1377 0/1:48,44:92:99:1167,0,1578 0/0:107,0:107:99:0,277,3816 0/1:26,22:48:99:608,0,674 0/0:78,0:78:99:0,211,2712 0/1:32,23:55:99:631,0,914 0/0:68,0:68:99:0,175,2245 0/0:71,0:71:99:0,184,2350 0/0:105,1:106:99:0,259,3404 0/0:84,0:85:99:0,220,2842 0/0:62,0:62:99:0,159,2044 0/0:69,0:69:99:0,178,2258 0/0:82,0:82:99:0,208,2692 0/0:139,0:140:99:0,331,4298 0/0:65,0:65:99:0,166,2155 0/0:58,0:58:99:0,169,2138 0/0:51,0:51:99:0,141,1795 0/0:65,0:65:99:0,178,2256 0/0:56,0:56:99:0,153,1928 13 114157846 . G A 6162.52 . AC=7;AF=0.083;AN=84;BaseQRankSum=-12.240;DP=4386;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.6900;InbreedingCoeff=-0.0909;MQ=59.27;MQ0=0;MQRankSum=1.729;QD=11.06;ReadPosRankSum=-2.381 GT:AD:DP:GQ:PL 0/1:36,24:60:99:650,0,1050 0/1:38,27:65:99:799,0,1125 0/1:38,27:65:99:729,0,1104 0/0:236,0:236:99:0,578,7839 0/0:181,0:181:99:0,463,6301 0/0:216,0:216:99:0,521,7079 0/0:164,0:164:99:0,403,5477 0/1:78,64:142:99:1827,0,2428 0/0:64,0:64:99:0,178,2271 0/0:63,0:63:99:0,166,2130 0/0:60,0:60:99:0,159,2022 0/0:69,0:69:99:0,193,2413 0/0:82,0:82:99:0,217,2761 0/0:81,0:81:99:0,214,2706 0/0:245,0:246:99:0,614,7800 0/0:68,0:69:99:0,169,2158 0/0:80,0:80:99:0,211,2696 0/0:69,0:69:99:0,190,2398 0/0:120,0:120:99:0,322,4053 0/0:126,0:126:99:0,322,4168 0/1:62,36:98:99:942,0,1801 0/1:51,28:79:99:678,0,1455 0/0:244,0:244:99:0,617,8395 0/0:175,0:175:99:0,430,5881 0/0:171,0:172:99:0,412,5522 0/0:176,0:176:99:0,439,5957 0/0:59,0:59:99:0,150,1916 0/1:27,21:48:99:537,0,812 0/0:48,0:48:99:0,126,1622 0/0:68,0:68:99:0,175,2212 0/0:72,0:72:99:0,190,2420 0/0:110,0:110:99:0,289,3739 0/0:82,0:82:99:0,211,2721 0/0:67,0:67:99:0,181,2276 0/0:85,0:85:99:0,226,2870 0/0:76,1:77:99:0,167,2537 0/0:103,0:104:99:0,259,3248 0/0:75,0:75:99:0,187,2414 0/0:60,0:60:99:0,169,2105 0/0:75,0:76:99:0,196,2551 0/0:69,0:69:99:0,190,2408 0/0:83,0:84:99:0,226,2865 13 114188422 . C CG 1365.63 . AC=21;AF=0.250;AN=84;BaseQRankSum=7.796;DP=6139;DS;FS=3200.000;HRun=2;HaplotypeScore=359.7530;InbreedingCoeff=-0.3372;MQ=60.91;MQ0=0;MQRankSum=15.136;QD=0.45;ReadPosRankSum=-21.388 GT:AD:DP:GQ:PL 0/1:78,27:106:1.01:1,0,2044 0/1:82,0:84:27.79:28,0,1587 0/1:64,35:101:99:156,0,1695 0/1:250,0:250:32.29:32,0,5142 0/0:211,0:211:99:0,249,4858 0/0:241,0:229:99:0,212,5613 0/1:231,0:220:78.61:79,0,5252 0/0:204,0:196:99:0,156,4749 0/0:76,30:105:8.19:0,8,2118 0/1:96,0:97:61.27:61,0,1959 0/0:96,22:118:99:0,151,2813 0/1:66,27:93:34.21:34,0,1701 0/0:87,24:113:25.39:0,25,2423 0/0:91,0:90:70.84:0,71,1691 0/0:250,0:250:6.36:0,6,4702 0/1:59,28:87:26.69:27,0,1626 0/0:145,0:145:22.72:0,23,2648 0/0:113,1:115:1.82:0,2,2078 0/1:165,0:212:54.54:55,0,4357 0/1:206,0:206:71.01:71,0,4176 0/0:203,0:203:99:0,207,4410 0/1:109,0:109:99:142,0,1909 0/1:250,0:250:99:145,0,5633 0/0:232,0:223:99:0,103,5690 0/0:209,0:205:99:0,231,4922 0/1:203,0:194:99:115,0,4196 0/0:83,2:83:25.44:0,25,1643 0/1:65,30:96:22.63:23,0,1725 0/1:69,26:96:22.85:23,0,1901 0/0:87,30:119:57.57:0,58,2527 0/0:66,31:98:39.57:0,40,2055 0/1:215,0:215:99:203,0,3987 0/0:106,0:106:44.70:0,45,2140 0/1:127,0:129:11.12:11,0,2451 0/1:68,25:96:99:151,0,1929 0/1:90,28:118:64.99:65,0,2532 0/0:182,0:182:31.12:0,31,3537 0/1:83,41:126:99:104,0,2097 0/0:69,24:93:31.66:0,32,1920 0/0:86,21:108:90.99:0,91,2482 0/0:68,22:90:36.67:0,37,1953 0/1:72,35:109:17.75:18,0,1948 13 114188424 . G GGTTTTTTTTTTT 11203.73 . AC=37;AF=0.440;AN=84;BaseQRankSum=4.560;DP=5699;DS;FS=3200.000;HRun=0;HaplotypeScore=1254.4554;InbreedingCoeff=-0.7793;MQ=60.53;MQ0=0;MQRankSum=11.827;QD=2.30;ReadPosRankSum=-23.119 GT:AD:DP:GQ:PL 0/1:87,0:87:99:327,0,6153 0/1:80,0:80:99:219,0,4907 0/1:78,0:77:99:399,0,5299 0/1:168,12:247:99:855,0,17204 0/1:155,4:209:10.38:10,0,15322 0/1:181,6:237:99:157,0,17321 0/1:173,7:225:99:508,0,16920 0/1:155,4:197:91.04:91,0,14846 0/1:81,0:80:99:319,0,6173 0/1:94,0:94:99:485,0,5804 0/1:100,0:99:36.02:36,0,7954 0/1:81,0:81:99:274,0,5736 0/1:98,0:98:99:263,0,7229 0/0:86,0:84:26.02:0,26,4659 0/1:163,3:240:99:434,0,15251 0/1:69,0:69:99:101,0,5061 0/1:133,0:131:99:138,0,8378 0/1:115,0:114:99:295,0,6651 0/0:148,2:159:24.45:0,24,13605 0/1:139,4:206:99:662,0,13234 0/0:140,0:197:99:0,140,13041 0/1:63,3:108:99:276,0,5760 0/1:181,5:250:99:768,0,18173 0/1:175,5:222:99:303,0,17834 0/0:161,4:210:92.06:0,92,15338 0/1:139,8:200:99:646,0,13460 0/1:81,0:80:99:186,0,4999 0/1:72,0:72:99:283,0,5637 0/1:77,0:77:99:198,0,5423 0/1:98,0:98:62.04:62,0,7254 0/1:79,0:79:99:235,0,5767 0/1:132,7:209:99:638,0,12208 0/1:69,1:103:99:204,0,6530 0/1:129,0:129:99:291,0,7632 0/1:79,0:79:99:400,0,5957 0/1:106,0:106:99:275,0,7788 0/0:117,0:167:18.65:0,19,11015 0/1:98,0:98:99:391,0,6446 0/1:82,0:82:66.93:67,0,5736 0/1:92,0:92:79.42:79,0,6885 0/1:74,0:73:7.69:8,0,5581 0/1:92,0:92:99:320,0,6148 13 114188430 . C T 29.65 . AC=2;AF=0.024;AN=84;BaseQRankSum=-22.168;DP=4748;DS;Dels=0.01;FS=1054.950;HRun=5;HaplotypeScore=17.9235;InbreedingCoeff=-0.0369;MQ=59.06;MQ0=0;MQRankSum=-7.141;QD=0.18;ReadPosRankSum=-15.838 GT:AD:DP:GQ:PL 0/0:73,12:85:31.98:0,32,2580 0/0:56,9:65:36.64:0,37,1956 0/0:66,12:78:23.41:0,23,2233 0/0:183,3:186:99:0,539,7226 0/0:163,0:164:99:0,485,6609 0/0:190,2:192:99:0,536,7547 0/0:194,1:195:99:0,578,7748 0/0:168,1:169:99:0,503,6760 0/0:74,11:85:99:0,138,2669 0/0:68,14:82:84.41:0,84,2365 0/0:85,8:94:99:0,219,3059 0/0:73,9:82:99:0,102,2595 0/0:83,12:95:60.22:0,60,2851 0/0:57,8:65:99:0,101,1989 0/0:190,0:191:99:0,563,7058 0/0:55,5:60:87.59:0,88,1973 0/0:98,16:114:99:0,202,3668 0/0:75,15:90:30.38:0,30,2584 0/0:146,1:148:99:0,430,5384 0/0:145,1:146:99:0,427,5416 0/0:136,1:137:99:0,397,4996 0/0:61,1:62:99:0,178,2264 0/0:194,1:195:99:0,578,7905 0/0:182,2:184:99:0,548,7479 0/0:168,0:169:99:0,488,6598 0/0:150,1:151:99:0,448,6119 0/0:56,10:66:89.69:0,90,2018 0/0:69,8:77:74.06:0,74,2460 0/0:56,9:66:76.15:0,76,1932 0/0:76,11:87:99:0,107,2682 0/0:65,15:80:1.24:5,0,2177 0/0:136,2:139:99:0,400,5066 0/0:71,1:72:99:0,210,2612 0/0:84,13:97:55.47:0,55,2880 0/1:62,12:74:63.93:64,0,2136 0/0:93,8:101:99:0,223,3405 0/0:129,0:129:99:0,379,4735 0/1:75,15:90:27.12:27,0,2509 0/0:75,8:83:99:0,100,2686 0/0:84,10:94:99:0,101,2917 0/0:66,9:75:99:0,165,2409 0/0:74,19:93:5.17:0,5,2550 13 114469164 . C T 4990.54 . AC=3;AF=0.036;AN=84;BaseQRankSum=5.756;DP=3091;DS;Dels=0.00;FS=5.811;HRun=0;HaplotypeScore=2.7798;InbreedingCoeff=-0.0370;MQ=59.12;MQ0=1;MQRankSum=-0.781;QD=13.98;ReadPosRankSum=0.651 GT:AD:DP:GQ:PL 0/0:78,1:79:99:0,202,2350 0/0:53,0:53:99:0,138,1571 0/0:47,0:47:99:0,123,1429 0/1:82,68:150:99:1928,0,2292 0/0:135,0:135:99:0,388,4760 0/0:104,0:104:99:0,259,3130 0/0:76,0:77:99:0,202,2464 0/0:86,0:87:99:0,220,2694 0/0:55,0:55:99:0,150,1740 0/0:49,0:49:99:0,135,1508 0/0:44,0:44:99:0,126,1444 0/0:60,0:60:99:0,159,1860 0/0:42,0:42:99:0,114,1302 0/0:70,0:70:99:0,186,2127 0/0:210,0:210:99:0,517,6054 0/0:46,0:46:99:0,129,1504 0/0:47,0:47:99:0,120,1409 0/0:64,0:64:99:0,177,1987 0/0:80,0:80:99:0,225,2487 0/0:120,0:120:99:0,301,3563 0/0:107,0:108:99:0,265,3081 0/1:33,34:67:99:944,0,755 0/1:66,74:140:99:2119,0,1842 0/0:53,0:53:99:0,150,1790 0/0:89,0:89:99:0,241,2911 0/0:79,0:79:99:0,211,2510 0/0:29,0:29:72.20:0,72,842 0/0:44,0:44:99:0,120,1373 0/0:51,0:52:99:0,132,1541 0/0:70,0:71:99:0,189,2159 0/0:57,0:57:99:0,156,1829 0/0:101,0:101:99:0,262,3104 0/0:59,0:59:99:0,153,1751 0/0:56,0:56:99:0,153,1703 0/0:55,0:55:99:0,144,1660 0/0:46,0:46:99:0,120,1431 0/0:83,0:83:99:0,202,2330 0/0:59,0:59:99:0,153,1755 0/0:58,0:58:99:0,165,1843 0/0:70,0:70:99:0,192,2216 0/0:48,0:48:99:0,138,1590 0/0:48,0:48:99:0,123,1447 13 114530114 . G A 3970.29 . AC=5;AF=0.060;AN=84;BaseQRankSum=-16.773;DP=3409;DS;Dels=0.00;FS=0.624;HRun=0;HaplotypeScore=1.9491;InbreedingCoeff=-0.0633;MQ=59.26;MQ0=0;MQRankSum=0.925;QD=12.10;ReadPosRankSum=-1.059 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,175,2208 0/0:60,1:61:99:0,172,2135 0/0:60,0:60:99:0,169,2135 0/0:145,0:145:99:0,382,5169 0/0:139,0:139:99:0,382,5206 0/0:95,0:95:99:0,256,3426 0/0:64,0:64:99:0,157,2137 0/0:101,0:101:99:0,265,3555 0/0:73,0:73:99:0,193,2466 0/0:49,0:49:99:0,132,1674 0/0:61,0:61:99:0,169,2114 0/0:58,0:58:99:0,156,2009 0/1:28,21:49:99:512,0,901 0/0:60,0:60:99:0,175,2199 0/0:191,0:195:99:0,497,6305 0/0:54,0:54:99:0,141,1787 0/0:53,0:53:99:0,147,1863 0/0:48,0:48:99:0,135,1699 0/0:145,0:146:99:0,385,4917 0/0:142,0:142:99:0,364,4663 0/0:137,0:138:99:0,361,4577 0/0:73,0:73:99:0,199,2570 0/0:147,0:147:99:0,382,5216 0/0:78,0:78:99:0,184,2521 0/1:49,37:86:99:870,0,1596 0/0:61,0:61:99:0,166,2240 0/0:35,0:35:93.30:0,93,1199 0/0:54,0:55:99:0,153,1901 0/0:45,0:45:99:0,126,1556 0/0:53,0:53:99:0,153,1918 0/0:61,0:61:99:0,175,2187 0/0:131,0:131:99:0,334,4322 0/0:73,0:73:99:0,205,2564 0/1:20,34:54:99:904,0,547 0/1:34,37:71:99:974,0,984 0/1:40,28:68:99:710,0,1244 0/0:145,0:146:99:0,367,4671 0/0:54,0:54:99:0,150,1853 0/0:66,0:66:99:0,187,2353 0/0:68,0:68:99:0,187,2334 0/0:50,0:50:99:0,138,1746 0/0:76,0:76:99:0,208,2638 13 114549975 . G A 111.35 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.687;DP=489;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3444;InbreedingCoeff=-0.0282;MQ=59.06;MQ0=0;MQRankSum=0.446;QD=6.55;ReadPosRankSum=0.942 GT:AD:DP:GQ:PL 0/0:9,0:9:27.09:0,27,339 0/0:8,0:8:24.08:0,24,301 0/0:4,0:4:12.04:0,12,153 0/0:15,0:15:42.14:0,42,557 0/0:9,0:9:24.08:0,24,327 0/0:12,0:12:27.09:0,27,383 0/0:18,0:18:42.14:0,42,585 0/0:15,0:15:36.12:0,36,509 0/0:6,0:6:18.05:0,18,223 0/0:12,0:12:33.11:0,33,422 0/0:8,0:8:24.08:0,24,311 0/1:6,3:9:78.61:79,0,201 0/0:13,0:13:36.11:0,36,449 0/1:4,4:8:95.07:95,0,135 0/0:30,0:30:72.23:0,72,952 0/0:14,0:14:30.07:0,30,382 0/0:10,0:10:27.09:0,27,346 0/0:9,0:9:24.08:0,24,311 0/0:14,0:14:36.11:0,36,451 0/0:25,0:25:60.20:0,60,799 0/0:12,0:12:30.07:0,30,373 0/0:10,0:10:27.08:0,27,337 0/0:21,0:21:57.19:0,57,796 0/0:10,0:10:24.08:0,24,320 0/0:14,0:14:39.13:0,39,518 0/0:10,0:10:27.09:0,27,369 0/0:6,0:7:18.06:0,18,233 0/0:14,0:14:39.09:0,39,476 0/0:5,0:5:15.04:0,15,174 0/0:6,0:6:18.06:0,18,228 0/0:15,0:15:42.13:0,42,538 0/0:20,0:20:42.14:0,42,570 0/0:12,0:12:24.08:0,24,328 0/0:9,0:9:24.08:0,24,312 0/0:10,0:10:27.08:0,27,331 0/0:6,0:6:18.05:0,18,215 0/0:24,0:24:57.18:0,57,748 0/0:6,0:6:15.05:0,15,200 0/0:10,0:10:27.08:0,27,335 0/0:5,0:5:12.04:0,12,157 0/0:7,0:7:21.06:0,21,260 0/0:8,0:8:21.07:0,21,271 13 114782779 . G A 15655.33 . AC=10;AF=0.119;AN=84;BaseQRankSum=-2.629;DP=5689;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.7809;InbreedingCoeff=-0.1351;MQ=58.73;MQ0=0;MQRankSum=2.158;QD=13.22;ReadPosRankSum=0.335 GT:AD:DP:GQ:PL 0/1:54,46:100:99:1159,0,1358 0/1:61,49:110:99:1347,0,1631 0/1:43,37:80:99:1060,0,1181 0/0:222,1:223:99:0,571,7804 0/0:224,0:224:99:0,578,7622 0/0:209,0:210:99:0,518,6774 0/0:169,0:169:99:0,433,5670 0/0:197,0:197:99:0,503,6565 0/0:123,2:125:99:0,265,3708 0/0:61,0:61:99:0,159,1916 0/1:38,39:77:99:1055,0,970 0/0:99,0:99:99:0,256,3115 0/0:73,0:73:99:0,183,2188 0/1:40,42:82:99:1152,0,1035 0/0:238,0:239:99:0,605,7160 0/0:89,0:90:99:0,244,2859 0/0:88,1:89:99:0,203,2774 0/0:98,0:98:99:0,250,2980 0/0:199,0:199:99:0,487,5990 0/0:227,0:227:99:0,548,6677 0/1:131,98:230:99:2666,0,3297 0/0:148,0:149:99:0,370,4541 0/0:218,0:218:99:0,599,7820 0/0:155,0:155:99:0,385,5011 0/0:204,0:206:99:0,503,6626 0/0:174,0:174:99:0,442,5754 0/0:79,0:79:99:0,214,2568 0/0:81,0:82:99:0,232,2730 0/0:75,0:75:99:0,190,2320 0/0:111,1:112:99:0,253,3455 0/1:35,37:72:99:1010,0,917 0/1:104,116:220:99:3124,0,2473 0/0:176,0:177:99:0,442,5352 0/0:84,0:84:99:0,226,2713 0/0:91,0:91:99:0,244,2943 0/1:51,60:111:99:1627,0,1288 0/0:222,2:226:99:0,506,6665 0/1:48,53:102:99:1455,0,1178 0/0:85,0:85:99:0,226,2676 0/0:76,0:77:99:0,187,2250 0/0:89,0:89:99:0,229,2770 0/0:102,1:103:99:0,231,3168 13 115030623 . A AG 913.10 . AC=18;AF=0.214;AN=84;BaseQRankSum=-4.570;DP=4924;DS;FS=1298.476;HRun=2;HaplotypeScore=287.4920;InbreedingCoeff=-0.2954;MQ=59.70;MQ0=0;MQRankSum=8.765;QD=0.50;ReadPosRankSum=-13.708 GT:AD:DP:GQ:PL 0/1:46,20:66:34.07:34,0,694 0/0:92,0:92:10.55:0,11,1286 0/0:52,21:73:8.91:0,9,956 0/1:250,0:249:30.79:31,0,2763 0/1:237,2:238:99:120,0,2538 0/0:249,0:248:67.50:0,68,2819 0/0:234,0:234:99:0,224,3610 0/0:211,0:209:63.07:0,63,2966 0/0:59,16:75:19.89:0,20,1060 0/0:70,0:70:16.85:0,17,1107 0/1:80,0:80:99:173,0,751 0/1:84,0:84:17.62:18,0,1087 0/0:76,0:76:38:0,38,1149 0/1:79,0:79:43.32:43,0,807 0/0:248,2:250:99:0,105,3389 0/0:68,0:68:4.95:0,5,982 0/1:91,18:109:99:108,0,1361 0/1:80,0:80:29.57:30,0,1158 0/1:65,28:93:94.29:94,0,1210 0/0:100,0:100:99:0,199,2310 0/0:82,0:82:7.94:0,8,969 0/0:62,0:62:18.05:0,18,958 0/0:161,88:249:5.22:0,5,2706 0/0:181,49:228:99:0,189,3570 0/0:229,0:227:99:0,129,3292 0/0:238,0:237:99:0,201,3742 0/0:52,14:66:26.80:0,27,973 0/0:83,1:84:2.90:0,3,1166 0/1:54,27:81:19.96:20,0,992 0/1:71,0:71:29.02:29,0,852 0/0:69,0:69:44.15:0,44,1119 0/0:78,0:78:88.56:0,89,1625 0/0:62,0:62:87.19:0,87,1234 0/1:51,29:80:20.34:20,0,956 0/1:59,24:83:84:84,0,969 0/1:63,24:87:37.73:38,0,1232 0/1:56,26:82:49.69:50,0,953 0/0:96,1:97:78.60:0,79,1693 0/0:44,19:63:20.34:0,20,925 0/1:82,0:82:55.91:56,0,1284 0/1:59,27:86:99:117,0,999 0/1:61,24:85:21.40:21,0,1160 13 115030626 . C G 78.45 . AC=2;AF=0.024;AN=84;BaseQRankSum=-21.283;DP=4487;DS;Dels=0.00;FS=381.850;HRun=2;HaplotypeScore=7.4342;InbreedingCoeff=-0.0482;MQ=59.40;MQ0=0;MQRankSum=-3.579;QD=0.52;ReadPosRankSum=-12.905 GT:AD:DP:GQ:PL 0/0:47,2:49:99:0,105,1172 0/0:56,24:80:87.62:0,88,1482 0/0:56,3:59:99:0,108,1295 0/0:136,100:237:30.45:0,30,2943 0/0:126,104:231:36.07:0,36,2782 0/0:144,92:236:39.96:0,40,2968 0/0:166,61:229:99:0,265,3389 0/0:137,68:206:27.03:0,27,2922 0/0:54,5:59:87.63:0,88,1302 0/0:47,22:69:65.13:0,65,1061 0/1:43,32:75:99:108,0,684 0/0:46,32:78:1.19:5,0,1029 0/0:54,22:76:79.67:0,80,1199 0/0:51,24:75:1.20:0,1,860 0/0:148,88:236:99:0,181,3624 0/0:47,19:66:5.71:0,6,921 0/0:82,23:105:99:0,171,2001 0/0:52,25:78:28.71:0,29,1188 0/0:63,7:72:99:0,120,1396 0/0:83,16:99:99:0,143,1901 0/0:41,34:75:0.85:0,1,1026 0/0:40,20:60:31.08:0,31,960 0/0:166,26:193:99:0,337,4060 0/0:182,17:199:99:0,295,4169 0/0:151,62:215:99:0,104,3103 0/0:157,68:225:99:0,158,3603 0/0:55,5:60:99:0,120,1380 0/0:57,27:84:29.67:0,30,1379 0/0:61,3:64:99:0,135,1570 0/0:39,27:66:33.12:0,33,973 0/0:46,21:67:45.94:0,46,1056 0/0:60,14:74:74.02:0,74,1498 0/0:47,15:62:69.54:0,70,1096 0/0:57,5:62:99:0,132,1603 0/0:64,6:71:99:0,129,1514 0/0:69,5:74:99:0,127,1700 0/0:50,10:60:99:0,117,1353 0/0:68,26:94:44.13:0,44,1705 0/0:51,2:53:99:0,111,1265 0/1:51,26:77:31.86:32,0,1160 0/0:66,3:69:99:0,150,1732 0/0:65,3:68:99:0,138,1584 13 115030714 . T C 27164.01 . AC=19;AF=0.226;AN=84;BaseQRankSum=-20.545;DP=4155;DS;Dels=0.00;FS=2.879;HRun=0;HaplotypeScore=0.8230;InbreedingCoeff=-0.0202;MQ=58.94;MQ0=0;MQRankSum=1.228;QD=15.29;ReadPosRankSum=-2.218 GT:AD:DP:GQ:PL 0/1:33,31:64:99:745,0,955 0/1:33,46:79:99:1182,0,914 0/1:25,28:53:99:721,0,741 0/1:96,87:183:99:2492,0,2735 0/1:99,111:210:99:3178,0,2876 0/1:100,95:195:99:2682,0,3101 0/1:104,98:202:99:2882,0,3065 0/1:94,97:191:99:2749,0,2691 0/1:34,41:75:99:1110,0,934 0/1:26,29:55:99:760,0,734 0/1:35,33:68:99:837,0,961 0/0:72,0:72:99:0,205,2534 0/0:82,0:82:99:0,223,2759 0/0:67,0:67:99:0,196,2407 0/0:200,0:201:99:0,545,6660 0/0:70,0:70:99:0,196,2404 0/0:96,0:96:99:0,271,3354 0/0:89,0:89:99:0,259,3163 0/1:30,36:66:99:952,0,876 1/1:0,69:69:99:2061,180,0 0/0:95,0:95:99:0,250,3121 0/0:47,0:47:99:0,135,1649 0/0:191,0:191:99:0,536,6650 0/0:185,0:185:99:0,533,6747 0/0:187,1:188:99:0,494,6607 0/0:187,0:188:99:0,497,6313 0/1:31,39:70:99:1056,0,891 1/1:0,63:63:99:1961,177,0 0/0:63,0:63:99:0,175,2164 0/0:60,0:60:99:0,166,2040 0/1:30,32:62:99:839,0,909 0/0:69,0:69:99:0,193,2378 0/0:49,0:49:99:0,138,1712 0/0:79,0:79:99:0,223,2744 0/0:60,0:60:99:0,178,2186 0/1:35,36:72:99:957,0,1036 0/0:70,0:70:99:0,187,2337 0/0:74,0:74:99:0,205,2517 0/0:70,0:70:99:0,193,2367 0/0:76,0:76:99:0,211,2603 0/0:70,1:71:99:0,172,2428 0/0:66,0:66:99:0,184,2284 13 115064423 . G A 802.09 . AC=3;AF=0.036;AN=84;BaseQRankSum=-6.656;DP=1123;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7492;InbreedingCoeff=-0.0370;MQ=46.95;MQ0=71;MQRankSum=1.581;QD=12.94;ReadPosRankSum=2.119 GT:AD:DP:GQ:PL 0/0:20,0:20:54.14:0,54,635 0/0:23,0:23:63.15:0,63,729 0/0:25,0:25:66.15:0,66,738 0/0:40,0:40:99:0,102,1311 0/0:33,0:33:90.28:0,90,1195 0/0:22,0:22:63.20:0,63,827 0/0:25,0:25:66.16:0,66,808 0/0:46,0:46:99:0,117,1514 0/0:22,0:23:57.17:0,57,691 0/0:30,0:30:78.21:0,78,904 0/0:14,0:14:39.12:0,39,482 0/0:27,0:27:69.15:0,69,794 0/0:15,0:15:33.07:0,33,374 0/0:28,0:28:69.19:0,69,819 0/0:76,0:76:99:0,187,2259 0/0:16,0:16:48.14:0,48,577 0/0:19,0:19:45.11:0,45,513 0/0:25,0:25:66.18:0,66,785 0/0:25,0:26:63.18:0,63,747 0/1:10,12:22:99:353,0,227 0/0:33,0:33:84.20:0,84,980 0/0:20,0:20:54.15:0,54,651 0/0:51,0:51:99:0,144,1886 0/0:19,0:19:45.14:0,45,605 0/0:19,0:19:54.16:0,54,673 0/0:30,0:30:75.22:0,75,974 0/1:13,8:21:99:214,0,273 0/0:24,0:24:60.16:0,60,690 0/1:7,11:19:82.05:310,0,82 0/0:24,0:24:51.14:0,51,609 0/0:20,0:20:54.12:0,54,610 0/0:34,0:34:78.19:0,78,935 0/0:30,0:30:84.21:0,84,978 0/0:22,0:22:63.19:0,63,767 0/0:21,0:22:48.14:0,48,577 0/0:25,0:25:66.19:0,66,787 0/0:42,0:42:99:0,108,1311 0/0:21,0:21:51.10:0,51,570 0/0:28,0:28:78.20:0,78,924 0/0:19,0:19:54.14:0,54,632 0/0:27,0:28:69.19:0,69,835 0/0:17,0:17:45.10:0,45,512 14 19566019 . C A 3.42 . 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C T 7162.85 . 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C A 9358.46 . 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T C 1835.60 . 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A C 105428.05 . 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C T 8569.85 . 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C T 1289.32 . 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A G 9403.88 . 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G T 100.26 . 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C A 28849.48 . 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A G 770.12 . 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G T 19342.31 . 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G C 584.11 . 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G T 15990.55 . 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C G 111253.53 . 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C T 9029.72 . AC=16;AF=0.190;AN=84;BaseQRankSum=-15.108;DP=1609;Dels=0.00;FS=3.882;HRun=0;HaplotypeScore=0.8686;InbreedingCoeff=-0.0809;MQ=58.02;MQ0=5;MQRankSum=-0.117;QD=15.57;ReadPosRankSum=-0.696 GT:AD:DP:GQ:PL 0/1:12,11:23:99:330,0,385 0/1:10,12:22:99:366,0,278 0/0:28,0:28:78.25:0,78,1002 0/0:75,0:76:99:0,214,2887 0/0:58,0:58:99:0,163,2164 0/0:67,0:67:99:0,184,2393 0/0:45,0:45:99:0,132,1778 0/0:68,0:68:99:0,193,2554 0/0:32,0:32:90.27:0,90,1112 0/0:20,0:20:54.17:0,54,688 0/1:16,12:28:99:352,0,482 0/0:37,0:37:96.30:0,96,1236 0/0:20,0:20:51.13:0,51,635 0/1:16,15:31:99:429,0,421 1/1:0,84:84:99:2781,232,0 0/1:11,16:27:99:454,0,309 0/1:7,14:21:99:435,0,172 0/0:31,0:32:93.28:0,93,1144 0/1:22,15:37:99:378,0,690 0/1:24,19:43:99:531,0,695 0/0:50,0:50:99:0,138,1666 0/0:28,0:28:75.22:0,75,922 0/0:66,0:66:99:0,190,2563 0/1:35,23:58:99:655,0,1121 0/1:37,19:56:99:527,0,1192 0/1:37,25:62:99:712,0,1157 0/0:21,0:21:63.16:0,63,760 0/0:21,0:21:63.20:0,63,791 0/0:28,0:28:78.21:0,78,971 0/0:24,0:24:63.20:0,63,799 0/0:34,0:34:99:0,99,1239 0/0:41,0:41:99:0,114,1485 0/1:14,13:27:99:392,0,418 0/1:20,12:32:99:294,0,641 0/0:33,0:33:99:0,99,1253 0/1:15,14:29:99:394,0,413 0/0:31,0:31:87.27:0,87,1090 0/0:26,0:26:72.21:0,72,877 0/0:39,0:39:99:0,111,1398 0/0:32,0:33:90.28:0,90,1146 0/0:32,0:32:90.27:0,90,1138 0/0:39,0:39:99:0,111,1385 14 21866026 . T C 1867.59 . AC=6;AF=0.071;AN=84;BaseQRankSum=-4.430;DP=1172;Dels=0.00;FS=2.140;HRun=1;HaplotypeScore=0.4544;InbreedingCoeff=-0.0769;MQ=59.51;MQ0=0;MQRankSum=0.738;QD=10.80;ReadPosRankSum=1.001 GT:AD:DP:GQ:PL 0/0:17,0:17:45.14:0,45,560 0/0:23,0:23:63.19:0,63,781 0/0:23,0:23:63.18:0,63,756 0/1:22,16:38:99:452,0,623 0/1:14,15:29:99:458,0,379 0/0:33,0:33:87.28:0,87,1138 0/0:31,0:31:87.25:0,87,1094 0/0:38,0:38:99:0,108,1369 0/1:18,7:25:99:156,0,544 0/1:13,6:19:99:128,0,360 0/0:23,0:23:57.18:0,57,717 0/0:24,0:24:72.22:0,72,877 0/0:18,0:19:54.17:0,54,662 0/0:15,0:15:42.13:0,42,509 0/0:81,0:81:99:0,202,2538 0/0:23,0:23:66.21:0,66,814 0/0:21,0:22:57.17:0,57,707 0/0:26,0:26:72.22:0,72,884 0/0:35,0:35:96.30:0,96,1208 0/0:43,0:43:99:0,108,1368 0/1:14,10:24:99:272,0,358 0/0:26,0:26:72.21:0,72,881 0/0:42,0:42:99:0,111,1430 0/0:36,0:36:87.27:0,87,1130 0/0:37,0:38:90.29:0,90,1183 0/0:33,0:33:90.29:0,90,1156 0/0:19,0:19:51.16:0,51,643 0/0:29,0:29:72.23:0,72,925 0/0:19,0:19:54.17:0,54,674 0/0:17,0:17:48.15:0,48,603 0/0:16,0:16:48.15:0,48,603 0/1:18,20:38:99:507,0,444 0/0:24,0:24:66.21:0,66,822 0/0:24,0:24:69.21:0,69,857 0/0:22,0:22:60.19:0,60,753 0/0:26,0:26:69.22:0,69,879 0/0:26,0:27:75.23:0,75,916 0/0:26,0:26:69.22:0,69,862 0/0:21,0:21:60.19:0,60,743 0/0:26,0:26:72.21:0,72,879 0/0:19,0:19:57.17:0,57,696 0/0:33,0:33:96.30:0,96,1186 14 21868681 . G A 1952.66 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.563;DP=1586;Dels=0.00;FS=5.661;HRun=1;HaplotypeScore=1.0299;InbreedingCoeff=-0.0244;MQ=59.42;MQ0=0;MQRankSum=0.089;QD=13.95;ReadPosRankSum=0.755 GT:AD:DP:GQ:PL 0/0:26,0:26:75.21:0,75,865 0/0:32,0:32:87.25:0,87,1030 0/0:29,0:29:78.21:0,78,906 0/0:48,0:48:99:0,132,1713 0/0:46,0:46:99:0,135,1776 0/0:31,0:31:87.26:0,87,1096 0/0:44,0:44:99:0,120,1554 0/0:37,0:37:99:0,108,1414 0/0:32,0:32:81.23:0,81,967 0/0:33,0:33:96.27:0,96,1103 0/0:28,0:28:81.22:0,81,933 0/0:27,0:27:72.18:0,72,826 0/0:22,0:22:60.17:0,60,686 0/0:27,0:27:78.23:0,78,930 0/1:51,57:108:99:1553,0,1297 0/0:30,0:30:90.23:0,90,1043 0/1:16,16:32:99:462,0,460 0/0:29,0:29:84.25:0,84,1013 0/0:69,0:70:99:0,186,2166 0/0:75,0:75:99:0,205,2388 0/0:78,0:78:99:0,205,2428 0/0:25,0:25:69.18:0,69,766 0/0:41,0:41:99:0,117,1500 0/0:35,0:35:99:0,99,1296 0/0:40,0:40:99:0,111,1423 0/0:22,0:22:60.19:0,60,780 0/0:20,0:20:60.17:0,60,697 0/0:26,0:26:75.21:0,75,860 0/0:33,0:33:93.28:0,93,1125 0/0:44,0:45:99:0,117,1409 0/0:31,0:31:87.24:0,87,1005 0/0:61,0:61:99:0,168,1954 0/0:45,0:45:99:0,117,1404 0/0:33,1:34:62.29:0,62,1054 0/0:25,0:25:69.19:0,69,802 0/0:36,0:36:99:0,105,1175 0/0:42,0:42:99:0,117,1336 0/0:27,0:27:72.20:0,72,855 0/0:36,0:36:99:0,102,1177 0/0:30,0:30:90.24:0,90,1022 0/0:18,0:18:48.14:0,48,566 0/0:30,0:30:78.22:0,78,914 14 21928338 . C T 56631.02 . AC=21;AF=0.250;AN=84;BaseQRankSum=12.026;DP=7825;DS;Dels=0.00;FS=114.367;HRun=0;HaplotypeScore=2.2794;InbreedingCoeff=0.0476;MQ=58.50;MQ0=0;MQRankSum=11.140;QD=17.15;ReadPosRankSum=2.841 GT:AD:DP:GQ:PL 0/0:166,1:167:99:0,453,5860 0/0:166,0:166:99:0,451,5573 0/0:164,0:164:99:0,418,5245 0/1:148,91:239:99:2714,0,4493 0/1:137,81:218:99:2358,0,4188 1/1:0,190:190:99:6768,527,0 1/1:1,211:212:99:7557,551,0 1/1:1,209:211:99:7505,560,0 0/1:85,74:160:99:2076,0,2402 0/1:72,55:127:99:1566,0,1989 0/0:165,1:166:99:0,423,5582 0/1:78,82:161:99:2441,0,2230 0/1:77,57:135:99:1544,0,2153 0/0:150,0:150:99:0,427,5230 0/0:243,1:250:99:0,648,8111 0/0:133,0:133:99:0,370,4515 0/1:82,73:155:99:2101,0,2374 0/0:184,1:185:99:0,502,6159 0/0:249,0:250:99:0,680,8239 0/0:249,1:250:99:0,647,8233 0/1:128,118:250:99:3311,0,3513 0/0:208,0:208:99:0,551,6782 0/1:147,103:250:99:3004,0,4767 0/0:217,0:217:99:0,575,7599 0/0:223,1:224:99:0,589,8286 0/0:239,0:239:99:0,626,8324 0/1:75,55:130:99:1606,0,2227 0/1:95,72:167:99:2081,0,2701 0/1:53,50:103:99:1501,0,1588 0/0:159,0:159:99:0,433,5301 0/0:169,0:170:99:0,475,5835 0/1:127,123:250:99:3532,0,3397 0/0:214,0:214:99:0,542,6765 0/0:169,0:169:99:0,463,5712 0/0:183,0:183:99:0,487,6066 0/1:99,96:195:99:2882,0,2850 0/0:249,0:249:99:0,662,8169 0/1:78,71:150:99:2084,0,2240 0/0:139,0:139:99:0,394,4794 0/0:145,0:145:99:0,412,5013 0/0:146,0:146:99:0,406,4986 0/0:176,2:178:99:0,461,6117 14 21928383 . T C 63513.73 . AC=21;AF=0.250;AN=84;BaseQRankSum=44.024;DP=9011;DS;Dels=0.00;FS=7.528;HRun=0;HaplotypeScore=2.4349;InbreedingCoeff=0.0476;MQ=58.12;MQ0=0;MQRankSum=4.144;QD=16.51;ReadPosRankSum=-1.148 GT:AD:DP:GQ:PL 0/0:238,0:239:99:0,608,7616 0/0:202,0:202:99:0,530,6591 0/0:166,0:166:99:0,433,5406 0/1:159,91:250:99:2659,0,4573 0/1:141,99:240:99:2802,0,4055 1/1:1,249:250:99:8711,625,0 1/1:2,236:239:99:7966,551,0 1/1:2,247:249:99:8251,575,0 0/1:108,91:200:99:2279,0,3002 0/1:94,75:169:99:2032,0,2667 0/0:222,1:223:99:0,575,7156 0/1:100,100:200:99:2817,0,2684 0/1:109,74:183:99:2035,0,2938 0/0:215,0:215:99:0,584,7216 0/0:249,0:250:99:0,707,8573 0/0:156,0:156:99:0,430,5250 0/1:91,111:202:99:3032,0,2397 0/0:217,0:217:99:0,578,7188 0/0:240,0:240:99:0,653,8058 0/0:233,0:233:99:0,629,7778 0/1:128,118:247:99:3152,0,3584 0/0:244,0:244:99:0,644,7983 0/1:161,86:247:99:2425,0,4707 0/0:246,0:246:99:0,638,8226 0/0:240,0:241:99:0,632,8124 0/0:238,0:239:99:0,614,7905 0/1:89,70:159:99:1937,0,2487 0/1:103,98:201:99:2711,0,2975 0/1:83,82:165:99:2259,0,2321 0/0:207,0:207:99:0,551,6862 0/0:200,0:200:99:0,530,6593 0/1:139,98:237:99:2760,0,3938 0/0:231,0:231:99:0,614,7585 0/0:202,0:202:99:0,557,6880 0/0:214,0:215:99:0,557,6974 0/1:121,107:228:99:2988,0,3415 0/0:229,0:229:99:0,608,7540 0/1:90,91:181:99:2698,0,2439 0/0:174,0:174:99:0,460,5736 0/0:193,0:193:99:0,524,6502 0/0:178,0:178:99:0,491,6024 0/0:224,0:224:99:0,620,7675 14 21928397 . A G 57821.60 . AC=21;AF=0.250;AN=84;BaseQRankSum=49.372;DP=8538;DS;Dels=0.00;FS=10.593;HRun=0;HaplotypeScore=2.2667;InbreedingCoeff=0.0476;MQ=58.28;MQ0=0;MQRankSum=-5.701;QD=16.26;ReadPosRankSum=1.789 GT:AD:DP:GQ:PL 0/0:215,0:215:99:0,557,6905 0/0:195,0:195:99:0,521,6372 0/0:153,0:153:99:0,406,4983 0/1:130,87:217:99:2505,0,3648 0/1:127,93:220:99:2675,0,3595 1/1:1,225:226:99:7902,568,0 1/1:2,228:230:99:7643,527,0 1/1:2,205:207:99:7088,494,0 0/1:100,80:180:99:1857,0,2794 0/1:87,69:156:99:1821,0,2502 0/0:204,0:204:99:0,545,6710 0/1:93,93:186:99:2681,0,2529 0/1:101,64:165:99:1690,0,2885 0/0:207,0:207:99:0,572,6997 0/0:249,0:250:99:0,674,8221 0/0:156,0:156:99:0,424,5229 0/1:92,99:191:99:2724,0,2461 0/0:209,0:209:99:0,566,6944 0/0:250,0:250:99:0,674,8346 0/0:245,0:245:99:0,665,8195 0/1:125,118:243:99:3345,0,3485 0/0:238,0:238:99:0,620,7638 0/1:153,80:233:99:2329,0,4557 0/0:227,0:227:99:0,605,7608 0/0:248,0:248:99:0,644,8215 0/0:226,0:226:99:0,590,7480 0/1:83,65:148:99:1737,0,2428 0/1:96,82:179:99:2352,0,2718 0/1:82,83:165:99:2264,0,2308 0/0:193,0:193:99:0,503,6211 0/0:191,0:191:99:0,524,6433 0/1:139,99:239:99:2794,0,3814 0/0:214,0:215:99:0,563,6979 0/0:184,0:184:99:0,494,6119 0/0:211,0:211:99:0,554,6842 0/1:112,82:194:99:2303,0,3190 0/0:224,1:226:99:0,608,7462 0/1:97,79:176:99:2113,0,2533 0/0:165,0:165:99:0,445,5472 0/0:188,0:188:99:0,515,6313 0/0:166,0:166:99:0,427,5236 0/0:221,0:221:99:0,593,7367 14 21928398 . T C 58159.99 . AC=21;AF=0.250;AN=84;BaseQRankSum=58.862;DP=8537;DS;Dels=0.00;FS=20.111;HRun=0;HaplotypeScore=2.2454;InbreedingCoeff=0.0476;MQ=58.28;MQ0=0;MQRankSum=-5.563;QD=16.38;ReadPosRankSum=1.896 GT:AD:DP:GQ:PL 0/0:214,0:214:99:0,554,6711 0/0:194,0:194:99:0,521,6200 0/0:152,0:152:99:0,406,4910 0/1:131,85:216:99:2448,0,3541 0/1:127,92:219:99:2686,0,3475 1/1:2,222:224:99:7889,559,0 1/1:2,226:229:99:7557,512,0 1/1:2,205:207:99:7142,488,0 0/1:99,80:179:99:1946,0,2715 0/1:84,69:153:99:1863,0,2340 0/0:201,0:201:99:0,539,6465 0/1:94,95:189:99:2726,0,2493 0/1:101,60:161:99:1572,0,2801 0/0:210,0:210:99:0,572,6859 0/0:250,0:250:99:0,680,8141 0/0:158,0:158:99:0,421,5023 0/1:91,99:190:99:2722,0,2396 0/0:210,0:210:99:0,566,6789 0/0:250,0:250:99:0,677,8214 0/0:249,0:250:99:0,674,8116 0/1:125,119:244:99:3434,0,3396 0/0:231,1:232:99:0,599,7225 0/1:153,82:235:99:2463,0,4462 0/0:227,0:227:99:0,602,7373 0/0:247,0:247:99:0,641,7952 0/0:223,0:223:99:0,581,7166 0/1:81,65:146:99:1745,0,2332 0/1:99,81:180:99:2354,0,2779 0/1:85,83:168:99:2242,0,2299 0/0:194,0:194:99:0,509,6158 0/0:193,0:193:99:0,527,6336 0/1:140,103:243:99:2964,0,3722 0/0:216,0:216:99:0,575,6892 0/0:185,0:185:99:0,493,5999 0/0:208,0:208:99:0,545,6559 0/1:111,81:192:99:2262,0,3100 0/0:230,0:230:99:0,620,7466 0/1:96,79:175:99:2146,0,2485 0/0:169,1:170:99:0,429,5499 0/0:188,0:188:99:0,517,6185 0/0:164,0:165:99:0,430,5196 0/0:220,0:220:99:0,593,7209 14 21990203 . AG A 205.65 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.137;DP=903;FS=1.291;HRun=6;HaplotypeScore=52.4846;InbreedingCoeff=-0.0123;MQ=58.76;MQ0=0;MQRankSum=0.269;QD=10.82;ReadPosRankSum=-0.022 GT:AD:DP:GQ:PL 0/0:17,0:17:51.17:0,51,671 0/0:22,0:22:57.16:0,57,721 0/0:15,0:15:45.15:0,45,590 0/0:33,0:32:93.30:0,93,1203 0/0:40,0:40:99:0,114,1488 0/0:20,0:20:51.16:0,51,663 0/0:14,0:14:36.12:0,36,473 0/0:40,0:40:99:0,105,1378 0/0:11,0:11:30.10:0,30,395 0/0:16,0:16:47.99:0,48,599 0/0:16,0:16:39.13:0,39,513 0/0:14,0:14:42.13:0,42,542 0/0:16,0:16:48.15:0,48,622 0/0:16,0:16:45.14:0,45,578 0/0:60,0:60:99:0,172,2198 0/0:17,0:17:51.17:0,51,671 0/0:21,0:21:60.19:0,60,778 0/0:13,0:13:36.12:0,36,474 0/0:27,0:27:69.22:0,69,889 0/0:40,0:40:99:0,114,1486 0/0:23,0:23:60.19:0,60,772 0/0:21,0:21:51.16:0,51,661 0/0:37,0:37:93.29:0,93,1206 0/0:16,0:16:42:0,42,528 0/0:24,0:24:72.23:0,72,935 0/0:16,0:16:45.15:0,45,592 0/0:13,0:13:27.09:0,27,355 0/0:18,0:18:51.16:0,51,662 0/0:20,0:20:57.17:0,57,734 0/0:17,0:17:48.15:0,48,621 0/0:14,0:14:42.14:0,42,550 0/0:42,0:42:99:0,120,1570 0/0:22,0:21:66.21:0,66,862 0/0:19,0:19:48.16:0,48,632 0/0:18,0:18:54.17:0,54,697 0/1:9,10:19:99:261,0,261 0/0:28,0:28:72.22:0,72,914 0/0:20,0:20:45.14:0,45,574 0/0:17,0:17:48.15:0,48,626 0/0:7,0:7:18.06:0,18,237 0/0:10,0:10:27.09:0,27,355 0/0:14,0:14:33.11:0,33,434 14 21990342 . T G 455.21 . 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C T 3307.25 . AC=2;AF=0.024;AN=84;BaseQRankSum=9.067;DP=4259;DS;Dels=0.00;FS=5.221;HRun=0;HaplotypeScore=1.9243;InbreedingCoeff=-0.0244;MQ=59.41;MQ0=0;MQRankSum=1.839;QD=12.58;ReadPosRankSum=1.498 GT:AD:DP:GQ:PL 0/0:84,0:84:99:0,244,2635 0/0:85,0:85:99:0,253,2732 0/0:71,0:71:99:0,207,2215 0/0:114,0:114:99:0,334,3995 0/0:150,0:150:99:0,442,5398 0/0:146,0:146:99:0,412,4904 0/0:116,0:116:99:0,337,3994 0/0:112,0:112:99:0,316,3721 0/0:71,0:71:99:0,210,2251 0/0:85,0:85:99:0,247,2621 0/0:75,0:75:99:0,220,2381 0/0:76,0:76:99:0,223,2449 0/0:57,0:57:99:0,168,1808 0/0:70,0:70:99:0,207,2237 0/0:214,0:214:99:0,586,6494 0/0:69,0:69:99:0,204,2205 0/0:69,0:69:99:0,189,2037 0/0:89,0:89:99:0,259,2825 0/0:159,0:160:99:0,442,4801 0/0:158,0:158:99:0,439,4852 0/1:89,79:168:99:2089,0,2199 0/1:52,43:95:99:1218,0,1325 0/0:152,0:152:99:0,439,5281 0/0:102,0:102:99:0,298,3523 0/0:102,0:102:99:0,301,3484 0/0:109,0:109:99:0,319,3708 0/0:74,0:74:99:0,205,2264 0/0:79,0:79:99:0,223,2461 0/0:86,1:87:99:0,216,2656 0/0:74,0:74:99:0,217,2364 0/0:89,0:89:99:0,259,2868 0/0:134,0:134:99:0,361,3990 0/0:84,0:84:99:0,235,2552 0/0:81,1:82:99:0,207,2570 0/0:68,0:68:99:0,202,2218 0/0:77,0:77:99:0,214,2326 0/0:146,0:146:99:0,418,4567 0/0:102,0:102:99:0,304,3235 0/0:95,0:95:99:0,280,2977 0/0:91,0:91:99:0,265,2873 0/0:89,0:89:99:0,259,2821 0/0:88,0:88:99:0,253,2763 14 22204998 . C T 967.56 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.003;DP=4218;DS;Dels=0.00;FS=0.630;HRun=0;HaplotypeScore=2.4703;InbreedingCoeff=-0.0120;MQ=59.01;MQ0=0;MQRankSum=3.329;QD=14.89;ReadPosRankSum=-1.150 GT:AD:DP:GQ:PL 0/0:76,0:76:99:0,199,2396 0/0:101,0:101:99:0,268,3370 0/0:76,0:76:99:0,220,2717 0/0:138,0:138:99:0,349,4616 0/0:115,0:115:99:0,313,4188 0/0:121,0:121:99:0,319,4209 0/0:115,0:115:99:0,280,3748 0/0:100,0:100:99:0,271,3526 0/0:88,0:88:99:0,241,2989 0/1:30,35:65:99:1014,0,730 0/0:80,0:80:99:0,217,2712 0/0:87,0:87:99:0,244,2986 0/0:80,0:80:99:0,211,2620 0/0:69,0:69:99:0,184,2297 0/0:244,0:246:99:0,656,8072 0/0:67,0:67:99:0,190,2317 0/0:106,0:106:99:0,295,3610 0/0:89,0:89:99:0,244,3000 0/0:113,0:114:99:0,304,3670 0/0:151,0:151:99:0,382,4826 0/0:129,0:130:99:0,340,4085 0/0:98,1:99:99:0,240,3191 0/0:160,0:160:99:0,415,5576 0/0:120,0:121:99:0,313,4120 0/0:122,0:122:99:0,319,4183 0/0:86,0:86:99:0,220,2920 0/0:57,1:58:99:0,139,1986 0/0:99,0:99:99:0,277,3399 0/0:76,0:76:99:0,202,2520 0/0:76,0:76:99:0,199,2493 0/0:79,0:79:99:0,217,2679 0/0:131,0:132:99:0,364,4547 0/0:94,0:94:99:0,271,3286 0/0:80,0:80:99:0,223,2737 0/0:95,0:95:99:0,250,3104 0/0:92,0:92:99:0,235,2931 0/0:108,0:108:99:0,289,3469 0/0:101,0:101:99:0,277,3474 0/0:84,0:84:99:0,232,2889 0/0:88,0:88:99:0,238,2986 0/0:70,0:70:99:0,196,2408 0/0:84,0:84:99:0,238,2978 14 22205052 . G T 412.66 . AC=10;AF=0.119;AN=84;BaseQRankSum=-17.240;DP=3348;DS;Dels=0.00;FS=579.766;HRun=1;HaplotypeScore=2.0316;InbreedingCoeff=-0.1483;MQ=58.84;MQ0=0;MQRankSum=-1.442;QD=0.59;ReadPosRankSum=-11.701 GT:AD:DP:GQ:PL 0/0:54,12:66:44.48:0,44,1309 0/0:55,12:67:21.41:0,21,1389 0/1:45,18:63:33.54:34,0,1126 0/1:72,24:96:27.75:28,0,1503 0/1:68,25:93:22.88:23,0,1420 0/0:85,13:98:70.28:0,70,1952 0/0:74,12:86:91.23:0,91,1779 0/0:51,10:61:42.93:0,43,1019 0/0:52,10:62:89.40:0,89,1401 0/1:51,14:66:40.98:41,0,1064 0/0:45,15:60:71.08:0,71,1042 0/0:61,11:72:34.22:0,34,1357 0/1:47,10:57:60.13:60,0,1056 0/0:44,10:54:36.51:0,37,1092 0/0:182,56:239:99:0,126,4344 0/0:44,8:52:38:0,38,967 0/0:56,13:69:64.55:0,65,1401 0/0:43,13:57:17.51:0,18,1026 0/1:61,29:90:99:153,0,1497 0/0:113,16:129:99:0,188,2993 0/0:85,24:109:99:0,146,2438 0/0:60,20:80:1.77:3,0,1135 0/0:95,27:122:47.77:0,48,2305 0/0:73,16:89:80.81:0,81,1714 0/0:72,17:89:80.63:0,81,1856 0/0:69,14:83:82.15:0,82,1732 0/1:40,12:52:48.97:49,0,949 0/0:50,15:65:53.62:0,54,1211 0/1:40,11:51:22.64:23,0,977 0/0:51,16:67:39.82:0,40,1293 0/0:51,13:64:37.29:0,37,1073 0/0:102,19:121:99:0,205,2776 0/0:74,15:89:7.32:0,7,1682 0/0:57,15:72:37.52:0,38,1262 0/0:53,15:68:25.93:0,26,1206 0/0:58,8:66:71.91:0,72,1386 0/0:69,17:86:99:0,170,2039 0/0:56,16:72:99:0,101,1497 0/0:55,13:68:47.87:0,48,1387 0/1:56,10:66:99:99,0,1292 0/1:45,18:63:34.93:35,0,1134 0/0:49,19:68:20.05:0,20,1205 14 22309829 . C G 3937.69 . AC=3;AF=0.036;AN=84;BaseQRankSum=-5.241;DP=4507;DS;Dels=0.00;FS=6.001;HRun=1;HaplotypeScore=1.7999;InbreedingCoeff=-0.0370;MQ=59.19;MQ0=0;MQRankSum=-0.843;QD=13.72;ReadPosRankSum=-0.493 GT:AD:DP:GQ:PL 0/0:96,0:96:99:0,271,3244 0/0:70,0:70:99:0,202,2440 0/0:67,0:67:99:0,199,2401 0/0:137,0:137:99:0,403,5203 0/0:130,0:131:99:0,361,4723 0/1:60,53:113:99:1535,0,1915 0/1:33,42:75:99:1249,0,979 0/0:99,0:99:99:0,289,3718 0/0:105,0:105:99:0,301,3699 0/0:85,0:85:99:0,241,2858 0/0:79,0:79:99:0,229,2807 0/0:81,0:81:99:0,235,2888 0/0:60,0:60:99:0,174,2093 0/1:54,45:99:99:1155,0,1703 0/0:250,0:250:99:0,737,8880 0/0:77,0:77:99:0,229,2751 0/0:117,0:117:99:0,337,4095 0/0:105,0:105:99:0,310,3760 0/0:194,1:197:99:0,530,6458 0/0:168,0:169:99:0,487,5984 0/0:155,0:155:99:0,454,5480 0/0:132,0:132:99:0,376,4555 0/0:136,0:136:99:0,391,5168 0/0:82,0:82:99:0,229,2975 0/0:109,0:109:99:0,316,4109 0/0:86,0:86:99:0,250,3200 0/0:71,0:71:99:0,214,2542 0/0:98,0:98:99:0,286,3438 0/0:98,0:98:99:0,286,3400 0/0:90,0:90:99:0,247,3074 0/0:94,1:95:99:0,250,3384 0/0:170,0:170:99:0,472,5925 0/0:125,0:125:99:0,346,4223 0/0:96,0:97:99:0,271,3270 0/0:91,0:91:99:0,262,3173 0/0:86,0:86:99:0,250,3039 0/0:141,0:141:99:0,400,4819 0/0:75,0:75:99:0,217,2615 0/0:83,0:83:99:0,241,2888 0/0:97,0:97:99:0,283,3435 0/0:81,0:81:99:0,226,2739 0/0:97,0:97:99:0,283,3449 14 22314985 . T C 23362.58 . AC=16;AF=0.190;AN=84;BaseQRankSum=16.737;DP=3450;Dels=0.00;FS=6.915;HRun=1;HaplotypeScore=1.4398;InbreedingCoeff=0.0735;MQ=58.53;MQ0=2;MQRankSum=-2.427;QD=19.50;ReadPosRankSum=1.859 GT:AD:DP:GQ:PL 0/1:23,37:60:99:1070,0,619 1/1:0,80:80:99:2680,211,0 0/1:31,40:71:99:1163,0,750 0/0:104,0:104:99:0,265,3385 0/0:112,0:112:99:0,286,3686 0/0:75,0:75:99:0,202,2633 0/0:79,0:79:99:0,208,2673 0/0:92,0:92:99:0,250,3177 0/0:61,0:61:99:0,172,2127 0/0:58,0:58:99:0,153,1896 0/0:65,0:65:99:0,175,2162 0/0:70,0:70:99:0,187,2327 0/0:38,0:38:99:0,105,1312 0/0:68,0:68:99:0,193,2387 0/0:212,0:212:99:0,551,6810 0/0:55,0:55:99:0,156,1905 0/0:63,0:63:99:0,163,2039 0/0:71,0:71:99:0,172,2199 0/1:55,60:117:99:1621,0,1436 1/1:0,151:151:99:5286,412,0 0/0:163,0:163:99:0,421,5225 0/0:67,0:68:99:0,178,2226 0/0:89,0:89:99:0,223,2897 0/1:43,55:98:99:1650,0,1216 0/1:46,52:98:99:1599,0,1269 0/0:77,0:77:99:0,187,2413 0/0:46,0:46:99:0,126,1594 0/0:53,0:53:99:0,144,1790 0/0:60,0:60:99:0,166,2058 0/1:34,38:72:99:1127,0,967 0/1:28,30:58:99:877,0,805 0/0:125,0:125:99:0,331,4141 0/1:50,54:104:99:1577,0,1347 0/0:67,0:67:99:0,196,2390 0/0:45,1:46:99:0,104,1557 0/1:34,38:72:99:1119,0,945 0/0:109,0:109:99:0,301,3726 0/1:38,42:80:99:1241,0,1086 0/1:26,48:74:99:1452,0,711 0/0:68,0:68:99:0,190,2345 0/1:33,30:63:99:900,0,947 0/0:58,0:58:99:0,156,1955 14 22315212 . A G 32557.47 . AC=16;AF=0.190;AN=84;BaseQRankSum=-29.225;DP=6628;DS;Dels=0.00;FS=3.423;HRun=0;HaplotypeScore=2.4679;InbreedingCoeff=0.0735;MQ=52.06;MQ0=0;MQRankSum=6.069;QD=15.27;ReadPosRankSum=0.075 GT:AD:DP:GQ:PL 0/1:72,72:144:99:1826,0,2114 1/1:1,116:117:99:3606,291,0 0/1:58,52:110:99:1338,0,1634 0/0:223,0:223:99:0,614,7594 0/0:234,0:234:99:0,677,8321 0/0:190,0:190:99:0,515,6546 0/0:165,0:165:99:0,463,5836 0/0:172,0:172:99:0,487,6001 0/0:146,0:146:99:0,433,5190 0/0:129,0:129:99:0,364,4367 0/0:128,0:128:99:0,355,4323 0/0:115,0:115:99:0,334,4063 0/0:101,0:101:99:0,289,3506 0/0:102,0:102:99:0,292,3543 0/0:250,0:250:99:0,719,8549 0/0:112,0:112:99:0,319,3874 0/0:146,0:146:99:0,406,4973 0/0:143,0:144:99:0,388,4765 0/1:135,108:246:99:2698,0,3897 1/1:0,209:209:99:6661,584,0 0/0:250,0:250:99:0,713,8698 0/0:144,0:144:99:0,409,4871 0/0:250,0:250:99:0,689,8567 0/1:79,63:142:99:1745,0,2321 0/1:99,83:185:99:2423,0,2954 0/0:160,0:160:99:0,445,5522 0/0:114,0:114:99:0,316,3847 0/0:133,0:133:99:0,367,4461 0/0:112,0:112:99:0,322,3903 0/1:68,72:140:99:1775,0,1932 0/1:66,58:124:99:1434,0,1937 0/0:250,0:250:99:0,683,8384 0/1:83,104:187:99:2696,0,2265 0/0:136,0:136:99:0,379,4604 0/0:127,0:127:99:0,364,4437 0/1:62,69:131:99:1824,0,1747 0/0:237,0:237:99:0,662,8053 0/1:77,65:142:99:1606,0,2239 0/1:78,57:135:99:1346,0,2358 0/0:117,0:117:99:0,334,4014 0/1:59,61:120:99:1579,0,1662 0/0:109,0:109:99:0,310,3770 14 22315296 . C T 16693.92 . AC=11;AF=0.131;AN=84;BaseQRankSum=-31.317;DP=6745;DS;Dels=0.00;FS=1.202;HRun=0;HaplotypeScore=4.0157;InbreedingCoeff=0.0585;MQ=36.06;MQ0=878;MQRankSum=1.979;QD=11.06;ReadPosRankSum=-0.822 GT:AD:DP:GQ:PL 0/1:90,59:151:99:1259,0,2117 1/1:9,101:112:99:2961,231,0 0/1:71,49:121:99:1105,0,1425 0/0:192,0:192:99:0,487,5873 0/0:181,1:182:99:0,446,5865 0/0:182,0:182:99:0,430,5360 0/0:188,0:188:99:0,430,5296 0/0:195,0:195:99:0,469,5802 0/0:165,0:166:99:0,403,4759 0/0:150,0:151:99:0,358,4272 0/0:135,0:135:99:0,283,3304 0/0:121,0:122:99:0,304,3578 0/0:121,0:121:99:0,241,2885 0/0:128,0:128:99:0,301,3528 0/0:250,0:250:99:0,559,6544 0/0:117,0:117:99:0,280,3265 0/0:158,0:158:99:0,343,4014 0/0:139,0:139:99:0,322,3788 0/1:112,84:202:99:2018,0,2595 0/1:111,98:211:99:2262,0,2489 0/0:246,0:249:99:0,541,6400 0/0:180,1:181:99:0,397,4766 0/0:232,0:232:99:0,566,6911 0/1:74,67:142:99:1672,0,1775 0/1:99,74:173:99:1622,0,2457 0/0:183,0:183:99:0,460,5767 0/0:121,0:121:99:0,274,3212 0/0:128,0:128:99:0,331,3872 0/0:120,0:120:99:0,286,3388 0/1:88,58:149:99:1355,0,1783 0/1:67,48:115:99:1146,0,1409 0/0:226,0:227:99:0,514,6139 0/0:193,0:193:99:0,430,5107 0/0:153,0:153:99:0,358,4196 0/0:141,0:141:99:0,331,3845 0/0:147,0:148:99:0,331,3893 0/0:226,0:227:99:0,514,5979 0/0:130,0:130:99:0,310,3659 0/1:79,54:133:99:1294,0,1930 0/0:126,0:126:99:0,280,3255 0/0:118,0:119:99:0,268,3073 0/0:132,0:132:99:0,304,3531 14 22315394 . T C 44.40 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.226;DP=3016;DS;Dels=0.00;FS=8.990;HRun=0;HaplotypeScore=1.4191;InbreedingCoeff=-0.0120;MQ=50.68;MQ0=1;MQRankSum=-2.577;QD=0.62;ReadPosRankSum=-1.347 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,156,1817 0/0:51,0:51:99:0,138,1565 0/0:48,0:48:99:0,141,1601 0/0:84,0:84:99:0,241,2912 0/0:81,0:81:99:0,226,2791 0/0:70,0:70:99:0,187,2317 0/0:58,0:58:99:0,159,1942 0/0:61,0:61:99:0,174,2117 0/0:67,0:67:99:0,183,2106 0/0:61,0:61:99:0,165,1956 0/0:67,0:67:99:0,192,2183 0/0:45,0:45:99:0,132,1514 0/0:47,0:47:99:0,138,1611 0/0:50,0:50:99:0,135,1580 0/0:178,0:178:99:0,478,5595 0/0:69,0:69:99:0,189,2166 0/0:62,0:62:99:0,174,1967 0/0:61,0:61:99:0,171,1968 0/0:106,0:106:99:0,292,3506 0/0:133,0:133:99:0,373,4483 0/0:99,0:99:99:0,274,3214 0/0:75,0:75:99:0,208,2427 0/0:105,0:105:99:0,283,3507 0/0:57,0:57:99:0,156,1938 0/0:58,0:58:99:0,156,1935 0/0:54,0:54:99:0,156,1873 0/0:42,0:42:99:0,126,1476 0/0:65,0:65:99:0,186,2140 0/0:57,0:57:99:0,165,1914 0/0:70,0:71:99:0,190,2291 0/0:39,0:39:99:0,117,1358 0/0:91,0:91:99:0,250,2974 0/0:90,0:90:99:0,247,2870 0/0:79,0:79:99:0,229,2720 0/0:62,0:62:99:0,165,1944 0/1:62,10:72:90.61:91,0,1772 0/0:121,0:122:99:0,316,3695 0/0:58,0:58:99:0,156,1859 0/0:69,0:70:99:0,205,2414 0/0:78,0:78:99:0,214,2545 0/0:55,0:55:99:0,165,1884 0/0:62,0:63:99:0,180,2059 14 22322690 . G A 36019.15 . AC=34;AF=0.405;AN=84;BaseQRankSum=-28.287;DP=3093;Dels=0.00;FS=15.123;HRun=1;HaplotypeScore=1.0393;InbreedingCoeff=0.3082;MQ=59.50;MQ0=0;MQRankSum=0.260;QD=21.96;ReadPosRankSum=-0.581 GT:AD:DP:GQ:PL 0/1:30,28:58:99:838,0,837 1/1:0,74:74:99:2509,208,0 0/1:30,19:49:99:503,0,909 0/0:116,0:116:99:0,289,3891 0/0:98,0:98:99:0,256,3478 0/1:60,56:116:99:1622,0,1832 0/1:53,37:90:99:1037,0,1783 0/0:89,0:89:99:0,235,3203 0/0:56,0:56:99:0,150,1905 0/0:46,0:46:99:0,123,1594 0/0:62,0:62:99:0,172,2196 0/1:38,43:81:99:1223,0,1111 0/0:48,0:48:99:0,138,1758 1/1:0,54:54:99:1835,150,0 0/0:210,0:210:99:0,536,6933 0/1:16,19:35:99:566,0,440 0/0:57,0:57:99:0,153,1939 0/1:28,23:51:99:636,0,796 1/1:1,113:114:99:3539,286,0 0/1:49,47:96:99:1304,0,1413 0/1:43,34:77:99:970,0,1187 1/1:0,77:77:99:2505,202,0 0/0:122,0:122:99:0,319,4353 1/1:0,80:80:99:2866,229,0 0/1:35,35:70:99:1041,0,1069 1/1:0,78:78:99:2614,208,0 0/0:33,1:34:93.30:0,93,1185 0/0:59,0:59:99:0,166,2080 0/1:29,21:50:99:567,0,899 1/1:0,57:57:99:2015,166,0 1/1:0,42:42:99:1462,120,0 0/0:105,0:105:99:0,268,3454 0/1:35,36:71:99:992,0,960 0/0:43,0:43:99:0,123,1576 0/0:47,1:48:89.42:0,89,1534 0/0:74,0:74:99:0,205,2645 0/0:124,0:124:99:0,319,4053 0/0:61,1:62:99:0,129,2033 0/1:24,24:48:99:686,0,722 1/1:0,54:54:99:1869,153,0 0/1:30,26:56:99:739,0,902 1/1:0,62:62:99:2084,169,0 14 22386449 . C T 11269.12 . AC=10;AF=0.119;AN=84;BaseQRankSum=-10.240;DP=4676;Dels=0.00;FS=3.394;HRun=3;HaplotypeScore=1.7700;InbreedingCoeff=-0.1351;MQ=59.12;MQ0=0;MQRankSum=1.592;QD=11.48;ReadPosRankSum=0.498 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,153,1908 0/0:86,0:86:99:0,226,2801 0/1:20,23:43:99:586,0,582 0/0:229,0:229:99:0,593,7738 0/0:196,0:196:99:0,512,6832 0/1:100,87:187:99:2406,0,2882 0/0:170,1:171:99:0,433,5984 0/1:88,74:163:99:1982,0,2584 0/0:91,0:91:99:0,244,3036 0/0:88,0:89:99:0,238,2902 0/0:88,0:88:99:0,241,2987 0/0:79,0:79:99:0,208,2566 0/0:67,0:67:99:0,172,2159 0/0:60,0:60:99:0,159,2014 0/0:241,0:242:99:0,620,7728 0/0:50,0:50:99:0,123,1564 0/1:39,37:76:99:1027,0,1088 0/0:80,0:80:99:0,202,2550 0/0:132,0:132:99:0,346,4307 0/1:92,66:161:99:1641,0,2446 0/0:155,0:156:99:0,400,4969 0/0:94,0:94:99:0,256,3212 0/0:228,0:230:99:0,587,7884 0/0:173,0:173:99:0,445,5846 0/0:201,1:202:99:0,509,6763 0/0:184,0:184:99:0,485,6470 0/0:57,0:57:99:0,153,1903 0/0:76,0:76:99:0,199,2427 0/0:73,0:73:99:0,184,2288 0/1:40,29:70:99:680,0,1099 0/1:44,27:71:99:793,0,1213 0/0:128,0:128:99:0,322,4052 0/0:99,0:99:99:0,250,3141 0/1:47,29:76:99:814,0,1212 0/0:81,1:82:99:0,178,2643 0/1:41,34:75:99:803,0,1118 0/0:111,0:111:99:0,289,3510 0/0:83,0:86:99:0,199,2559 0/0:60,0:60:99:0,156,1972 0/0:81,0:81:99:0,196,2481 0/0:84,0:84:99:0,235,2910 0/1:40,20:60:99:537,0,1193 14 22392347 . G A 574.70 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.867;DP=1136;Dels=0.00;FS=7.937;HRun=1;HaplotypeScore=0.3635;InbreedingCoeff=-0.0244;MQ=59.00;MQ0=0;MQRankSum=1.291;QD=11.97;ReadPosRankSum=-1.119 GT:AD:DP:GQ:PL 0/0:29,0:29:81.26:0,81,1038 0/0:13,0:13:39.12:0,39,486 0/0:14,0:14:39.13:0,39,510 0/0:34,0:34:81.27:0,81,1121 0/0:27,0:27:72.24:0,72,1005 0/0:43,0:43:87.29:0,87,1235 0/0:28,0:28:69.23:0,69,966 0/0:17,0:17:42.12:0,42,547 0/0:16,0:16:42.13:0,42,538 0/0:19,0:19:57.18:0,57,736 0/0:21,0:21:54.17:0,54,698 0/0:18,0:18:48.14:0,48,606 0/0:14,0:14:36.12:0,36,475 0/0:15,0:15:42.14:0,42,542 0/0:83,0:83:99:0,199,2640 0/0:20,0:20:48.16:0,48,641 0/0:16,0:16:45.14:0,45,579 0/0:10,0:10:27.09:0,27,358 0/0:26,0:26:75.24:0,75,950 0/0:30,0:30:75.23:0,75,971 0/0:55,0:55:99:0,132,1732 0/0:31,0:31:78.24:0,78,1013 0/0:48,0:48:99:0,123,1721 0/0:31,0:31:66.21:0,66,926 0/0:40,0:40:93.31:0,93,1297 0/0:28,0:28:72.23:0,72,975 0/0:14,0:14:36.11:0,36,459 0/0:15,0:15:42.13:0,42,524 0/0:23,0:23:57.18:0,57,737 0/1:12,19:31:99:491,0,383 0/1:11,6:17:99:146,0,345 0/0:39,0:39:93.31:0,93,1256 0/0:38,0:38:99:0,99,1290 0/0:23,0:23:57.19:0,57,757 0/0:17,0:17:42.14:0,42,552 0/0:20,0:20:51.17:0,51,679 0/0:41,0:41:99:0,102,1329 0/0:35,0:35:87.28:0,87,1132 0/0:20,0:20:54.17:0,54,706 0/0:20,0:20:60.17:0,60,752 0/0:24,0:24:57.18:0,57,747 0/0:33,0:33:81.26:0,81,1063 14 22392838 . G T 10662.18 . AC=10;AF=0.119;AN=84;BaseQRankSum=-25.724;DP=4332;DS;Dels=0.00;FS=0.658;HRun=0;HaplotypeScore=6.9733;InbreedingCoeff=-0.1351;MQ=59.42;MQ0=0;MQRankSum=0.882;QD=12.14;ReadPosRankSum=-0.918 GT:AD:DP:GQ:PL 0/0:91,0:91:99:0,244,3118 0/0:76,0:76:99:0,211,2676 0/1:36,26:62:99:723,0,1077 0/0:178,0:178:99:0,488,6534 0/0:147,0:148:99:0,400,5485 0/1:75,47:122:99:1251,0,2401 0/0:97,0:97:99:0,271,3685 0/1:51,42:93:99:1050,0,1565 0/0:103,0:103:99:0,280,3627 0/0:79,0:79:99:0,223,2790 0/0:68,0:68:99:0,184,2314 0/0:72,1:73:99:0,181,2635 0/0:62,0:62:99:0,172,2164 0/0:79,0:79:99:0,220,2804 0/0:233,0:233:99:0,641,8181 0/0:84,1:85:99:0,219,3018 0/1:39,25:64:99:656,0,1175 0/0:90,0:90:99:0,247,3138 0/0:178,2:180:99:0,435,5938 0/1:84,73:157:99:1995,0,2531 0/0:180,0:181:99:0,488,6240 0/0:113,0:113:99:0,304,3894 0/0:172,0:172:99:0,473,6406 0/0:87,0:87:99:0,238,3188 0/0:123,0:123:99:0,328,4446 0/0:100,0:100:99:0,271,3607 0/0:57,0:57:99:0,153,1953 0/0:72,0:72:99:0,193,2455 0/0:77,0:77:99:0,217,2749 0/1:45,38:83:99:998,0,1290 0/1:25,25:50:99:691,0,805 0/0:181,0:181:99:0,469,6038 0/0:111,0:111:99:0,310,3904 0/1:34,38:72:99:1074,0,1027 0/0:69,0:69:99:0,187,2398 0/1:47,45:92:99:1247,0,1398 0/0:162,1:163:99:0,442,5631 0/0:73,0:73:99:0,199,2528 0/0:84,0:84:99:0,238,3015 0/0:67,0:67:99:0,190,2352 0/0:82,0:82:99:0,232,2920 0/1:45,37:83:99:978,0,1435 14 22392845 . C T 6050.03 . AC=5;AF=0.060;AN=84;BaseQRankSum=8.524;DP=3964;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=7.0397;InbreedingCoeff=-0.0633;MQ=59.43;MQ0=0;MQRankSum=-0.681;QD=12.66;ReadPosRankSum=0.995 GT:AD:DP:GQ:PL 0/0:75,0:75:99:0,198,2257 0/0:72,1:73:99:0,181,2243 0/0:56,0:56:99:0,150,1727 0/0:155,0:155:99:0,418,5128 0/0:131,0:132:99:0,358,4414 0/0:108,0:108:99:0,298,3579 0/0:90,0:90:99:0,247,2955 0/0:84,0:84:99:0,214,2608 0/0:100,0:100:99:0,280,3184 0/0:76,0:76:99:0,214,2332 0/1:37,27:64:99:738,0,928 0/0:63,0:63:99:0,180,1980 0/0:56,0:56:99:0,147,1632 0/0:75,0:75:99:0,196,2230 0/0:188,0:189:99:0,508,5733 0/0:77,1:78:99:0,185,2388 0/0:56,0:56:99:0,147,1691 0/0:83,1:84:99:0,180,2460 0/0:163,0:163:99:0,424,4861 0/0:149,0:149:99:0,412,4664 0/1:76,88:165:99:2387,0,1892 0/1:63,43:106:99:1165,0,1678 0/0:164,0:164:99:0,436,5399 0/0:76,0:76:99:0,196,2402 0/0:119,0:119:99:0,316,3839 0/0:83,0:83:99:0,229,2746 0/0:55,0:55:99:0,150,1720 0/0:73,0:73:99:0,189,2134 0/0:67,0:67:99:0,186,2129 0/0:79,0:79:99:0,223,2508 0/0:52,0:52:99:0,147,1675 0/0:173,0:173:99:0,448,5141 0/0:111,0:111:99:0,289,3260 0/0:60,0:60:99:0,171,1932 0/0:69,0:69:99:0,190,2171 0/0:81,0:81:99:0,220,2526 0/0:153,0:153:99:0,418,4654 0/1:32,34:66:99:984,0,774 0/0:83,0:83:99:0,235,2580 0/0:55,0:55:99:0,153,1705 0/1:48,29:77:99:776,0,1235 0/0:71,0:71:99:0,190,2157 14 22434289 . C T 1478.64 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.282;DP=6112;DS;Dels=0.00;FS=1.825;HRun=0;HaplotypeScore=3.4574;InbreedingCoeff=-0.0120;MQ=59.40;MQ0=0;MQRankSum=-0.397;QD=14.50;ReadPosRankSum=-0.458 GT:AD:DP:GQ:PL 0/0:136,0:136:99:0,361,4164 0/0:110,0:110:99:0,310,3426 0/0:100,0:100:99:0,271,3155 0/0:207,0:207:99:0,551,6753 0/0:165,0:166:99:0,436,5403 0/0:177,0:177:99:0,478,5882 0/0:129,0:129:99:0,343,4176 0/0:130,0:130:99:0,361,4440 0/0:139,0:139:99:0,373,4329 0/0:116,0:116:99:0,319,3597 0/0:123,0:123:99:0,331,3752 0/0:124,0:124:99:0,325,3744 0/0:98,0:98:99:0,259,2953 0/0:122,0:122:99:0,334,3820 0/0:246,0:246:99:0,686,7628 0/0:115,0:115:99:0,316,3609 0/0:121,0:122:99:0,325,3688 0/0:145,0:145:99:0,400,4494 0/0:204,0:205:99:0,526,5980 0/0:236,0:236:99:0,632,7262 0/0:219,0:219:99:0,590,6761 0/0:143,0:143:99:0,391,4471 0/0:199,0:199:99:0,551,6778 0/0:157,0:157:99:0,385,4774 0/0:163,0:164:99:0,433,5320 0/0:152,0:152:99:0,388,4839 0/0:70,0:70:99:0,198,2232 0/1:46,56:102:99:1525,0,1241 0/0:116,0:116:99:0,325,3727 0/0:134,0:134:99:0,361,4127 0/0:108,0:108:99:0,304,3441 0/0:225,0:225:99:0,596,6851 0/0:155,0:155:99:0,406,4677 0/0:124,0:124:99:0,337,3876 0/0:117,0:117:99:0,304,3493 0/0:147,0:148:99:0,400,4571 0/0:211,1:212:99:0,531,6402 0/0:129,0:129:99:0,355,4000 0/0:137,0:137:99:0,391,4313 0/0:134,0:134:99:0,379,4297 0/0:103,0:103:99:0,292,3327 0/0:118,0:118:99:0,322,3661 14 22476137 . AAGGT A 1618.44 . AC=13;AF=0.155;AN=84;BaseQRankSum=11.472;DP=1132;FS=1.999;HRun=0;HaplotypeScore=120.7883;InbreedingCoeff=0.1504;MQ=58.01;MQ0=0;MQRankSum=-8.967;QD=7.89;ReadPosRankSum=2.232 GT:AD:DP:GQ:PL 0/0:25,0:25:72.24:0,72,1933 0/0:24,0:24:72.25:0,72,1990 0/1:14,1:15:13.57:14,0,991 0/0:48,0:48:99:0,144,3947 0/0:40,0:40:99:0,117,3254 0/1:23,2:25:35.58:36,0,1775 0/0:40,0:40:99:0,117,3275 0/1:15,2:17:71.37:71,0,950 0/0:29,0:29:87.30:0,87,2402 0/0:38,0:38:99:0,111,3097 0/0:34,0:34:99:0,102,2776 0/0:16,1:17:1.08:5,0,1283 0/1:12,4:16:99:175,0,859 0/0:22,0:22:66.22:0,66,1784 0/0:96,0:96:99:0,283,7770 0/0:18,0:18:51.17:0,51,1401 0/0:25,0:25:75.26:0,75,2068 0/1:17,4:21:99:149,0,1041 0/0:21,0:21:60.21:0,60,1664 1/1:3,7:10:21.07:385,21,0 0/1:19,4:23:99:114,0,1263 0/1:20,6:26:99:269,0,1359 0/0:46,0:46:99:0,135,3728 0/0:35,0:35:99:0,105,2936 0/0:37,0:36:99:0,111,3098 0/0:42,0:41:99:0,126,3491 0/0:16,0:16:48.16:0,48,1309 0/0:21,0:21:63.22:0,63,1732 0/0:18,0:18:54.19:0,54,1494 0/0:15,0:15:42.14:0,42,1165 0/0:12,0:12:33.11:0,33,924 0/1:20,5:25:99:125,0,1381 0/0:27,0:27:81.28:0,81,2203 0/1:16,2:18:64:64,0,1148 0/0:15,0:15:45.15:0,45,1260 1/1:2,7:9:21.07:383,21,0 0/0:40,0:40:99:0,120,3340 0/0:36,0:36:99:0,102,2826 0/0:15,0:15:45.15:0,45,1250 0/0:27,0:27:81.28:0,81,2244 0/0:19,0:19:57.20:0,57,1576 0/0:29,0:29:87.30:0,87,2364 14 22476144 . C T 934.64 . AC=12;AF=0.143;AN=84;BaseQRankSum=-6.340;DP=1133;Dels=0.00;FS=1.898;HRun=1;HaplotypeScore=0.5463;InbreedingCoeff=0.1900;MQ=58.43;MQ0=0;MQRankSum=-9.036;QD=5.99;ReadPosRankSum=1.734 GT:AD:DP:GQ:PL 0/0:23,0:23:63.19:0,63,781 0/0:23,1:25:28.41:0,28,746 0/1:11,2:13:31.88:32,0,305 0/0:53,0:53:99:0,129,1767 0/0:39,0:39:99:0,108,1465 0/0:23,2:25:1.55:4,0,716 0/0:42,0:42:99:0,105,1412 0/1:13,3:16:60.92:61,0,399 0/0:28,0:28:78.25:0,78,989 0/0:39,0:39:96.26:0,96,1188 0/0:32,0:32:81.26:0,81,1058 0/0:17,1:18:14.72:0,15,543 0/1:10,4:14:99:101,0,239 0/0:22,0:22:60.17:0,60,736 0/0:98,0:98:99:0,250,3176 0/0:17,0:17:45.14:0,45,565 0/0:27,0:27:75.24:0,75,934 0/1:15,4:19:83.50:83,0,441 0/0:18,0:18:51.16:0,51,651 1/1:0,7:7:21.06:234,21,0 0/1:15,4:19:82.27:82,0,468 0/1:17,6:23:99:137,0,491 0/0:49,0:50:99:0,111,1542 0/0:39,0:39:99:0,99,1308 0/0:42,0:42:99:0,108,1454 0/0:45,0:45:99:0,120,1582 0/0:15,0:15:42.13:0,42,516 0/0:22,0:22:51.16:0,51,670 0/0:17,0:17:51.16:0,51,638 0/0:16,0:16:36.12:0,36,473 0/0:12,0:12:36.11:0,36,455 0/1:19,4:23:64.83:65,0,572 0/0:25,0:25:72.22:0,72,901 0/1:12,2:14:24.74:25,0,401 0/0:18,0:18:51.16:0,51,632 1/1:0,8:8:24.07:268,24,0 0/0:42,0:42:99:0,111,1394 0/0:33,0:33:81.26:0,81,1034 0/0:18,0:18:51.15:0,51,616 0/0:29,0:29:78.25:0,78,992 0/0:20,0:20:57.18:0,57,721 0/0:28,0:28:75.23:0,75,936 14 22476146 . C T 842.61 . AC=11;AF=0.131;AN=84;BaseQRankSum=-7.943;DP=1138;Dels=0.00;FS=1.987;HRun=1;HaplotypeScore=0.4535;InbreedingCoeff=0.2173;MQ=58.42;MQ0=0;MQRankSum=-9.381;QD=6.02;ReadPosRankSum=2.053 GT:AD:DP:GQ:PL 0/0:24,0:24:63.20:0,63,812 0/0:26,0:26:69.22:0,69,884 0/1:11,2:13:23.03:23,0,306 0/0:51,0:51:99:0,126,1741 0/0:40,0:40:99:0,111,1522 0/0:23,2:25:1.55:4,0,735 0/0:43,0:43:99:0,108,1484 0/0:13,1:14:2.68:0,3,408 0/0:28,0:28:75.24:0,75,963 0/0:39,0:39:96.27:0,96,1215 0/0:31,0:31:84.27:0,84,1094 0/0:16,1:17:14.72:0,15,551 0/1:10,4:14:97.62:98,0,280 0/0:20,0:20:54.17:0,54,698 0/0:97,1:99:99:0,224,3220 0/0:17,0:17:42.14:0,42,545 0/0:25,0:25:72.23:0,72,926 0/1:15,4:19:84.39:84,0,453 0/0:19,0:19:54.17:0,54,692 1/1:0,7:7:21.06:234,21,0 0/1:15,4:19:83.94:84,0,474 0/1:17,6:23:99:137,0,512 0/0:50,0:50:99:0,114,1601 0/0:39,0:39:99:0,99,1341 0/0:42,0:42:99:0,111,1533 0/0:45,0:45:99:0,120,1583 0/0:17,0:17:48.15:0,48,609 0/0:22,0:22:51.17:0,51,684 0/0:19,0:19:51.16:0,51,658 0/0:15,0:15:36.11:0,36,476 0/0:11,0:11:33.11:0,33,426 0/1:19,3:22:38.24:38,0,587 0/0:26,0:26:75.24:0,75,964 0/1:13,2:15:24.73:25,0,427 0/0:21,0:21:60.19:0,60,761 1/1:0,8:8:24.07:267,24,0 0/0:43,0:43:99:0,114,1477 0/0:33,0:33:84.27:0,84,1084 0/0:18,0:18:48.15:0,48,608 0/0:30,0:30:81.26:0,81,1054 0/0:20,0:20:57.18:0,57,735 0/0:29,0:29:78.25:0,78,1015 14 22476147 . A C 883.62 . AC=11;AF=0.131;AN=84;BaseQRankSum=6.913;DP=1139;Dels=0.00;FS=0.585;HRun=1;HaplotypeScore=0.4868;InbreedingCoeff=0.2171;MQ=58.44;MQ0=0;MQRankSum=-8.959;QD=6.22;ReadPosRankSum=1.533 GT:AD:DP:GQ:PL 0/0:24,0:24:66.19:0,66,806 0/0:25,0:25:66.19:0,66,819 0/1:10,2:12:39.65:40,0,296 0/0:50,0:50:99:0,126,1618 0/0:40,0:40:99:0,111,1408 0/0:23,2:25:1.55:4,0,696 0/0:42,0:42:99:0,102,1331 0/0:13,1:14:2.68:0,3,391 0/0:29,0:29:78.24:0,78,969 0/0:40,0:40:99:0,99,1229 0/0:31,0:31:84.27:0,84,1056 0/0:16,1:17:14.71:0,15,522 0/1:10,5:15:99:123,0,267 0/0:20,0:20:54.17:0,54,681 0/0:98,0:98:99:0,250,3111 0/0:17,0:17:45.12:0,45,548 0/0:26,0:26:75.23:0,75,922 0/1:15,4:19:89.95:90,0,399 0/0:20,0:20:54.15:0,54,665 1/1:0,7:7:21.06:234,21,0 0/1:16,4:20:82.44:82,0,493 0/1:17,6:23:99:132,0,516 0/0:49,0:49:99:0,114,1503 0/0:40,0:40:99:0,105,1321 0/0:41,0:41:99:0,111,1424 0/0:44,0:44:99:0,117,1471 0/0:17,0:17:48.15:0,48,587 0/0:23,0:23:54.17:0,54,703 0/0:19,0:19:51.16:0,51,643 0/0:15,0:15:36.10:0,36,457 0/0:12,0:12:36.11:0,36,443 0/1:19,3:22:38.23:38,0,584 0/0:26,0:26:75.24:0,75,932 0/1:13,2:16:22.86:23,0,405 0/0:21,0:21:60.19:0,60,739 1/1:0,8:8:24.07:270,24,0 0/0:43,0:43:99:0,114,1423 0/0:32,0:32:81.25:0,81,1009 0/0:18,0:18:51.15:0,51,606 0/0:30,0:30:81.26:0,81,1019 0/0:20,0:20:57.18:0,57,707 0/0:29,0:29:78.25:0,78,987 14 22476390 . C A 324.62 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.616;DP=756;Dels=0.00;FS=2.249;HRun=1;HaplotypeScore=0.3301;InbreedingCoeff=-0.0295;MQ=58.51;MQ0=0;MQRankSum=-0.014;QD=9.02;ReadPosRankSum=-1.353 GT:AD:DP:GQ:PL 0/0:6,0:6:18.06:0,18,225 0/0:18,0:18:51.16:0,51,658 0/0:10,0:10:27.09:0,27,356 0/0:28,0:28:75.25:0,75,1036 0/0:30,0:30:75.25:0,75,1031 0/0:12,0:12:30.10:0,30,420 0/0:14,0:14:36.12:0,36,496 0/0:30,0:30:78.25:0,78,1054 0/0:16,0:16:42.14:0,42,546 0/0:9,0:9:27.09:0,27,340 0/0:20,0:20:48.15:0,48,625 0/0:14,0:14:39.13:0,39,511 0/0:10,0:10:27.09:0,27,345 0/0:20,0:20:57.18:0,57,735 0/0:60,0:60:99:0,153,1999 0/0:17,0:17:45.14:0,45,578 0/0:10,0:10:30.10:0,30,378 0/0:14,0:14:39.12:0,39,497 0/0:28,0:28:78.23:0,78,977 0/0:15,0:15:33.11:0,33,440 0/0:27,0:27:78.25:0,78,988 0/0:13,0:13:36.11:0,36,454 0/0:27,0:27:75.25:0,75,1037 0/1:9,4:13:99:111,0,322 0/0:29,0:29:75.22:0,75,1017 0/1:12,11:23:99:276,0,392 0/0:15,0:15:42.13:0,42,530 0/0:11,0:11:33.11:0,33,420 0/0:11,0:11:33.11:0,33,424 0/0:20,0:20:57.18:0,57,740 0/0:18,0:18:51.14:0,51,636 0/0:19,0:19:45.12:0,45,580 0/0:17,1:19:45.14:0,45,580 0/0:15,0:15:42.14:0,42,550 0/0:14,0:14:39.12:0,39,493 0/0:9,0:9:24.08:0,24,312 0/0:27,0:27:69.22:0,69,891 0/0:13,0:13:36.11:0,36,455 0/0:12,1:13:2.15:0,2,427 0/0:14,0:14:42.13:0,42,514 0/0:11,0:11:33.10:0,33,408 0/0:13,0:13:39.11:0,39,476 14 22600863 . G A 53707.77 . AC=60;AF=0.714;AN=84;BaseQRankSum=-23.446;DP=2494;Dels=0.00;FS=1.175;HRun=1;HaplotypeScore=1.1399;InbreedingCoeff=-0.1667;MQ=59.29;MQ0=0;MQRankSum=0.155;QD=22.83;ReadPosRankSum=-1.201 GT:AD:DP:GQ:PL 0/1:21,20:41:99:563,0,627 0/1:26,26:52:99:756,0,734 1/1:0,28:28:81.25:991,81,0 0/1:37,31:68:99:932,0,1198 1/1:0,58:58:99:2043,160,0 0/1:31,25:56:99:767,0,934 0/1:19,20:39:99:623,0,608 0/1:23,17:40:99:494,0,807 1/1:0,62:62:99:2163,178,0 1/1:0,65:65:99:2202,181,0 1/1:0,60:60:99:2004,163,0 1/1:0,45:45:99:1583,129,0 1/1:0,33:33:90.28:1108,90,0 1/1:0,43:43:99:1445,117,0 0/1:118,107:225:99:2785,0,3477 0/1:17,24:41:99:723,0,489 0/1:26,26:52:99:764,0,796 1/1:0,53:53:99:1812,150,0 1/1:0,80:80:99:2744,220,0 0/1:46,35:81:99:993,0,1359 0/1:59,59:118:99:1728,0,1651 0/0:75,0:75:99:0,196,2544 0/1:42,40:82:99:1170,0,1264 0/1:17,30:47:99:922,0,565 0/1:26,14:40:99:407,0,887 1/1:1,40:41:69.11:1325,69,0 1/1:0,46:46:99:1559,126,0 1/1:0,47:48:99:1664,135,0 1/1:0,63:63:99:2054,163,0 0/1:25,24:49:99:695,0,785 0/1:20,17:37:99:475,0,654 0/1:44,42:86:99:1165,0,1314 0/0:64,3:67:99:0,100,2167 1/1:0,47:47:99:1665,135,0 1/1:0,36:36:99:1214,99,0 1/1:1,53:54:99:1742,110,0 1/1:0,84:84:99:2653,214,0 0/1:23,31:54:99:933,0,682 1/1:0,45:45:99:1542,129,0 0/1:21,20:41:99:585,0,670 1/1:2,52:54:99:1768,106,0 0/1:26,32:58:99:950,0,709 14 22616547 . A G 14905.55 . AC=23;AF=0.274;AN=84;BaseQRankSum=-8.546;DP=2737;Dels=0.00;FS=0.172;HRun=1;HaplotypeScore=10.0967;InbreedingCoeff=-0.1376;MQ=58.95;MQ0=0;MQRankSum=0.932;QD=13.89;ReadPosRankSum=-0.710 GT:AD:DP:GQ:PL 0/1:32,18:50:99:423,0,968 0/1:23,14:37:99:362,0,695 0/0:44,0:44:99:0,117,1479 0/0:93,0:93:99:0,241,3047 0/0:102,0:102:99:0,268,3439 0/0:62,0:62:99:0,160,2091 0/1:29,21:50:99:498,0,832 0/0:63,0:63:99:0,172,2153 0/1:36,31:67:99:794,0,1011 0/1:31,32:64:99:834,0,893 0/0:56,0:56:99:0,153,1922 0/1:32,21:53:99:495,0,900 0/1:29,25:54:99:614,0,809 0/1:26,10:36:99:278,0,708 0/0:208,0:208:99:0,512,6505 0/0:53,0:53:99:0,147,1793 0/1:32,29:61:99:736,0,948 0/0:45,1:46:99:0,126,1586 0/0:100,0:100:99:0,274,3382 0/0:107,0:107:99:0,289,3615 0/0:99,0:99:99:0,259,3247 0/0:53,0:53:99:0,141,1721 0/0:114,0:114:99:0,295,3788 1/1:0,49:49:99:1620,126,0 0/1:26,30:56:99:858,0,674 0/1:41,29:70:99:811,0,1191 0/0:46,0:46:99:0,132,1638 0/1:17,21:38:99:607,0,436 0/0:52,0:52:99:0,129,1655 0/1:24,28:52:99:745,0,698 0/1:26,12:38:99:275,0,831 0/0:94,0:94:99:0,223,2890 1/1:0,62:62:99:2039,168,0 0/1:26,23:49:99:630,0,744 0/1:20,20:40:99:566,0,591 0/1:36,27:63:99:679,0,1031 0/0:106,0:106:99:0,265,3317 0/0:57,0:57:99:0,156,1934 0/1:19,19:38:99:542,0,542 0/0:54,0:54:99:0,150,1873 0/1:26,20:46:99:501,0,793 0/0:55,0:55:99:0,153,1912 14 22616554 . C A 11040.11 . AC=12;AF=0.143;AN=84;BaseQRankSum=-20.813;DP=2690;Dels=0.00;FS=5.242;HRun=0;HaplotypeScore=10.6737;InbreedingCoeff=-0.1667;MQ=59.05;MQ0=0;MQRankSum=-0.992;QD=14.34;ReadPosRankSum=1.211 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,144,1836 0/1:13,22:35:99:661,0,343 0/1:26,16:43:99:417,0,764 0/0:100,0:100:99:0,250,3404 0/0:102,0:102:99:0,265,3587 0/0:62,0:62:99:0,160,2169 0/0:48,0:48:99:0,132,1750 0/1:28,33:61:99:922,0,828 0/0:62,0:62:99:0,166,2109 0/0:66,0:66:99:0,172,2190 0/0:56,0:56:99:0,153,1967 0/1:17,33:50:99:927,0,469 0/0:52,0:52:99:0,129,1688 0/1:10,25:35:99:681,0,253 0/1:102,102:204:99:2618,0,2648 0/1:26,24:50:99:694,0,705 0/1:30,30:61:99:855,0,746 0/0:48,0:48:99:0,126,1612 0/0:95,0:95:99:0,262,3245 0/0:105,0:105:99:0,283,3596 0/0:101,0:101:99:0,262,3290 0/0:53,0:53:99:0,144,1801 0/0:115,0:115:99:0,301,4076 0/0:49,0:49:99:0,129,1718 0/0:60,1:61:99:0,150,2017 0/0:67,0:67:99:0,172,2326 0/0:46,0:46:99:0,135,1725 0/0:35,0:35:93.29:0,93,1187 0/0:43,0:43:99:0,108,1429 0/1:29,23:52:99:616,0,845 0/1:12,27:39:99:827,0,314 0/0:93,0:93:99:0,223,2926 0/0:61,0:61:99:0,166,2100 0/0:46,0:46:99:0,129,1643 0/0:40,0:40:99:0,117,1493 0/0:57,1:58:99:0,133,1929 0/1:51,50:101:99:1364,0,1394 0/0:55,0:55:99:0,147,1848 0/1:21,18:39:99:460,0,655 0/0:53,0:53:99:0,144,1854 0/0:43,0:43:99:0,123,1553 0/0:54,0:54:99:0,144,1833 14 22636737 . G A 576.23 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.641;DP=2672;Dels=0.00;FS=3.944;HRun=0;HaplotypeScore=1.1869;InbreedingCoeff=-0.0120;MQ=59.21;MQ0=0;MQRankSum=1.454;QD=15.57;ReadPosRankSum=0.530 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,150,1738 0/0:55,0:55:99:0,144,1677 0/0:34,0:34:87.23:0,87,1037 0/0:122,0:122:99:0,310,3946 0/0:74,0:74:99:0,202,2581 0/0:72,0:72:99:0,181,2302 0/0:76,0:76:99:0,202,2587 0/0:69,0:69:99:0,190,2374 0/0:62,0:62:99:0,162,1952 0/0:39,0:39:99:0,117,1308 0/0:53,0:53:99:0,144,1700 0/0:55,0:55:99:0,150,1747 0/0:28,0:28:75.21:0,75,866 0/0:47,0:47:99:0,129,1518 0/0:220,0:220:99:0,551,6584 0/0:48,0:48:99:0,132,1542 0/0:54,0:54:99:0,147,1659 0/0:54,0:54:99:0,147,1715 0/0:89,0:89:99:0,250,2851 0/0:110,0:110:99:0,286,3357 0/0:95,0:95:99:0,259,3034 0/0:71,0:71:99:0,181,2172 0/0:92,0:92:99:0,247,3213 0/0:57,0:57:99:0,147,1857 0/0:73,1:74:99:0,155,2357 0/0:49,0:49:99:0,126,1537 0/0:38,0:38:99:0,114,1310 0/0:41,0:41:99:0,117,1353 0/0:42,0:42:99:0,123,1424 0/0:53,0:53:99:0,132,1569 0/0:32,0:32:93.23:0,93,1048 0/0:92,1:93:99:0,213,2832 0/0:59,0:59:99:0,162,1865 0/0:45,0:45:99:0,132,1524 0/0:50,0:50:99:0,129,1550 0/1:16,21:37:99:622,0,410 0/0:88,0:88:99:0,220,2642 0/0:46,0:46:99:0,120,1406 0/0:48,0:48:99:0,135,1608 0/0:48,0:49:99:0,138,1599 0/0:53,0:53:99:0,153,1750 0/0:44,0:44:99:0,123,1429 14 22636784 . A C 24633.29 . AC=28;AF=0.333;AN=84;BaseQRankSum=11.619;DP=2516;Dels=0.00;FS=0.155;HRun=0;HaplotypeScore=0.9104;InbreedingCoeff=0.1429;MQ=59.20;MQ0=0;MQRankSum=0.258;QD=19.80;ReadPosRankSum=-1.810 GT:AD:DP:GQ:PL 0/1:25,31:56:99:955,0,731 0/1:19,29:48:99:915,0,436 0/0:32,0:32:96.29:0,96,1163 0/0:105,0:105:99:0,292,3664 0/0:72,0:72:99:0,211,2683 0/0:48,0:48:99:0,141,1787 0/1:33,30:63:99:1005,0,990 0/0:60,0:60:99:0,169,2153 0/0:60,0:60:99:0,172,2069 0/0:51,1:52:99:0,106,1681 0/0:53,0:53:99:0,156,1863 1/1:0,51:51:99:1875,150,0 0/1:22,14:36:99:336,0,668 1/1:0,42:42:99:1494,117,0 0/1:87,105:192:99:2940,0,2368 0/1:22,16:38:99:458,0,670 1/1:1,55:56:99:1892,127,0 0/0:55,0:55:99:0,165,1946 0/0:91,0:91:99:0,256,3151 0/0:99,0:99:99:0,268,3356 0/0:95,0:95:99:0,265,3272 0/0:64,1:65:99:0,146,2154 0/0:83,0:83:99:0,238,2988 1/1:0,48:48:99:1810,135,0 0/1:39,27:66:99:867,0,1202 0/1:19,17:36:99:593,0,552 0/0:38,0:38:99:0,102,1260 0/1:25,26:51:99:771,0,737 0/0:46,0:46:99:0,123,1532 1/1:0,42:42:99:1431,114,0 0/1:26,15:41:99:452,0,807 0/0:77,0:77:99:0,214,2685 0/1:25,27:52:99:803,0,688 0/1:26,28:54:99:889,0,794 0/1:21,26:47:99:770,0,611 0/1:25,21:46:99:572,0,729 0/1:39,51:90:99:1573,0,1066 0/0:54,0:54:99:0,150,1843 1/1:1,43:44:97.69:1493,98,0 0/0:44,0:44:99:0,129,1584 0/1:19,26:45:99:738,0,578 0/0:43,0:43:99:0,123,1525 14 22636874 . C T 11783.47 . AC=19;AF=0.226;AN=84;BaseQRankSum=8.790;DP=2364;Dels=0.00;FS=10.055;HRun=0;HaplotypeScore=1.1058;InbreedingCoeff=-0.1563;MQ=59.29;MQ0=0;MQRankSum=2.832;QD=13.83;ReadPosRankSum=1.037 GT:AD:DP:GQ:PL 0/1:26,24:51:99:649,0,631 0/1:34,26:60:99:708,0,855 0/0:34,0:34:90.25:0,90,1063 0/0:88,0:88:99:0,226,2823 0/0:60,0:60:99:0,153,1917 0/0:51,0:51:99:0,129,1636 0/1:35,17:52:99:475,0,891 0/0:35,0:35:90.27:0,90,1120 0/0:57,0:57:99:0,144,1742 0/0:46,0:46:99:0,120,1364 0/0:44,0:44:99:0,123,1398 0/1:25,21:46:99:615,0,622 0/1:16,21:37:99:595,0,416 0/1:14,28:42:99:780,0,336 0/0:204,0:205:99:0,493,5904 0/0:35,0:35:96.26:0,96,1107 0/1:19,25:44:99:766,0,460 0/0:54,0:54:99:0,147,1688 0/0:82,0:82:99:0,223,2581 0/0:108,0:108:99:0,265,3079 0/0:78,0:78:99:0,199,2413 0/0:57,0:57:99:0,141,1652 0/0:66,0:66:99:0,163,2085 1/1:0,31:31:81.25:1028,81,0 0/1:37,27:64:99:709,0,1052 0/1:25,12:37:99:316,0,690 0/0:33,0:33:84.23:0,84,986 0/1:24,17:41:99:485,0,648 0/0:34,0:34:96.25:0,96,1087 0/1:32,27:59:99:691,0,824 0/0:30,0:30:84.24:0,84,974 0/0:91,0:91:99:0,229,2752 0/1:28,22:50:99:615,0,710 0/1:27,17:44:99:439,0,709 0/1:27,25:52:99:672,0,674 0/1:24,23:47:99:634,0,565 0/0:82,0:82:99:0,196,2385 0/0:49,0:49:99:0,129,1515 0/1:14,21:35:99:586,0,344 0/0:41,0:41:99:0,108,1284 0/1:25,35:60:99:1020,0,555 0/0:52,0:52:99:0,132,1561 14 22924288 . C T 2080.79 . AC=2;AF=0.024;AN=84;BaseQRankSum=7.874;DP=2145;Dels=0.00;FS=5.201;HRun=0;HaplotypeScore=0.6256;InbreedingCoeff=-0.0244;MQ=59.24;MQ0=0;MQRankSum=1.004;QD=13.97;ReadPosRankSum=1.345 GT:AD:DP:GQ:PL 0/0:28,0:28:75.19:0,75,850 0/0:32,0:32:90.25:0,90,1035 0/0:38,0:38:99:0,102,1177 0/1:25,33:58:99:909,0,694 0/0:64,0:64:99:0,169,2097 0/0:65,0:65:99:0,172,2134 0/0:48,0:48:99:0,117,1469 0/0:48,0:48:99:0,132,1629 0/0:55,0:55:99:0,147,1664 0/0:42,0:42:99:0,108,1244 0/0:52,0:52:99:0,141,1622 0/0:41,0:41:99:0,114,1294 0/0:34,0:34:99:0,99,1101 0/0:40,0:40:99:0,111,1260 0/0:200,0:201:99:0,505,5849 0/0:31,0:31:93.25:0,93,1025 0/0:33,0:33:93.21:0,93,1015 0/0:53,0:54:99:0,135,1553 0/0:70,0:70:99:0,183,2071 0/0:60,0:60:99:0,168,1910 0/0:83,0:83:99:0,214,2481 0/0:43,0:43:99:0,111,1283 0/1:44,47:91:99:1234,0,1168 0/0:43,0:43:99:0,120,1486 0/0:75,0:75:99:0,196,2448 0/0:44,0:44:99:0,114,1409 0/0:21,0:21:63.18:0,63,717 0/0:42,0:42:99:0,111,1249 0/0:33,0:33:84.23:0,84,985 0/0:44,0:44:99:0,120,1354 0/0:35,0:35:99:0,99,1116 0/0:67,0:67:99:0,171,1998 0/0:58,0:58:99:0,150,1736 0/0:30,0:30:84.21:0,84,937 0/0:35,0:35:93.23:0,93,1064 0/0:35,0:35:93.21:0,93,1054 0/0:62,0:62:99:0,168,1886 0/0:32,0:33:96.25:0,96,1070 0/0:49,0:49:99:0,135,1513 0/0:35,0:35:99:0,99,1082 0/0:51,0:51:99:0,132,1511 0/0:42,0:42:99:0,117,1356 14 22931940 . C A 249.81 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.567;DP=670;Dels=0.00;FS=1.371;HRun=3;HaplotypeScore=0.4702;InbreedingCoeff=-0.0127;MQ=59.33;MQ0=0;MQRankSum=-0.372;QD=19.22;ReadPosRankSum=0.035 GT:AD:DP:GQ:PL 0/0:6,0:6:15.05:0,15,197 0/0:10,0:10:30.10:0,30,386 0/0:10,0:10:27.09:0,27,339 0/0:26,0:26:72.24:0,72,969 0/0:15,0:15:42.12:0,42,534 0/0:9,0:9:21.06:0,21,276 0/0:14,0:14:36.12:0,36,492 0/0:13,0:13:33.11:0,33,446 0/0:25,0:25:63.20:0,63,816 0/0:15,0:15:39.11:0,39,472 0/0:15,0:15:42.13:0,42,527 0/0:13,0:13:39.13:0,39,499 0/0:14,0:14:39.13:0,39,496 0/0:10,0:10:27.09:0,27,349 0/0:49,0:50:99:0,132,1681 0/0:10,0:10:27.07:0,27,333 0/0:14,0:14:39.12:0,39,483 0/0:16,0:16:42.10:0,42,523 0/0:28,0:28:69.22:0,69,903 0/0:17,0:17:45.14:0,45,584 0/0:22,0:22:57.18:0,57,718 0/0:11,0:11:27.08:0,27,347 0/0:16,0:16:30.10:0,30,418 0/0:18,0:18:45.15:0,45,607 0/0:25,0:25:60.20:0,60,820 0/0:13,0:13:30.10:0,30,424 0/0:10,0:10:27.08:0,27,336 0/0:19,0:19:45.14:0,45,576 0/0:12,0:12:33.10:0,33,412 0/0:23,0:23:60.17:0,60,738 0/0:14,0:14:39.12:0,39,498 0/1:4,9:13:99:296,0,117 0/0:19,0:19:51.16:0,51,655 0/0:11,0:11:27.09:0,27,344 0/0:13,0:13:39.12:0,39,490 0/0:14,1:15:39.12:0,39,498 0/0:22,0:22:57.15:0,57,689 0/0:13,0:13:36.10:0,36,449 0/0:12,0:12:33.11:0,33,418 0/0:17,0:17:51.16:0,51,640 0/0:10,0:10:30.09:0,30,370 0/0:12,0:12:36.11:0,36,452 14 22961854 . A G 3697.82 . AC=23;AF=0.274;AN=84;BaseQRankSum=10.501;DP=567;Dels=0.00;FS=3.346;HRun=0;HaplotypeScore=0.1560;InbreedingCoeff=0.0973;MQ=59.15;MQ0=0;MQRankSum=-0.451;QD=18.49;ReadPosRankSum=-0.065 GT:AD:DP:GQ:PL 0/0:14,0:14:33.10:0,33,414 0/0:14,0:14:42.12:0,42,493 0/1:4,7:11:89.91:208,0,90 0/0:14,0:14:36.09:0,36,436 0/0:14,0:14:36.11:0,36,455 0/1:10,4:14:62.45:62,0,252 0/1:7,6:13:99:202,0,169 0/1:5,5:10:99:182,0,101 0/0:14,0:14:33.10:0,33,420 0/0:12,0:12:33.10:0,33,410 0/1:4,9:13:97.34:300,0,97 0/1:5,5:10:99:161,0,115 0/1:2,1:3:29.55:30,0,65 0/1:3,2:5:62.86:63,0,80 0/0:54,0:54:99:0,135,1647 0/0:7,0:7:21.07:0,21,261 0/0:10,0:10:27.09:0,27,343 0/0:18,0:18:48.15:0,48,591 0/0:18,0:18:45.14:0,45,572 0/0:20,0:20:45.13:0,45,571 0/0:19,0:19:51.16:0,51,630 0/0:16,0:16:39.10:0,39,476 0/0:22,0:22:51.16:0,51,676 0/0:13,0:13:36.09:0,36,431 0/0:15,0:15:36.11:0,36,465 0/1:2,2:4:35.72:73,0,36 0/1:1,3:4:25.76:97,0,26 0/0:14,0:14:36.11:0,36,441 1/1:0,5:5:15.04:182,15,0 1/1:0,11:11:30.09:372,30,0 1/1:0,7:7:21.07:274,21,0 0/1:14,4:18:99:101,0,408 1/1:0,22:22:57.19:752,57,0 0/1:8,6:14:99:160,0,245 0/0:7,0:7:18.05:0,18,215 0/0:11,0:11:33.10:0,33,397 0/0:21,0:21:51.13:0,51,623 0/1:6,3:9:86.94:87,0,186 0/0:8,0:8:18.06:0,18,230 0/0:12,0:12:33.10:0,33,407 0/1:11,4:15:99:111,0,325 0/1:3,9:12:76.85:281,0,77 14 22966701 . C A 771.52 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.280;DP=1528;Dels=0.00;FS=10.976;HRun=0;HaplotypeScore=0.5899;InbreedingCoeff=-0.0244;MQ=59.06;MQ0=0;MQRankSum=0.569;QD=10.72;ReadPosRankSum=-3.027 GT:AD:DP:GQ:PL 0/0:22,0:22:57.17:0,57,708 0/0:28,0:28:75.24:0,75,960 0/0:27,0:27:75.23:0,75,948 0/0:56,0:56:99:0,144,1958 0/0:44,0:44:99:0,114,1530 0/0:46,0:46:99:0,114,1534 0/0:45,0:45:99:0,120,1627 0/0:56,0:56:99:0,138,1876 0/0:28,0:28:75.23:0,75,961 0/0:33,0:33:90.28:0,90,1141 0/0:33,0:33:93.27:0,93,1146 0/0:31,0:31:81.26:0,81,1057 0/0:24,0:24:66.18:0,66,816 0/0:30,0:30:81.25:0,81,1022 0/0:109,0:109:99:0,277,3501 0/0:24,0:24:69.20:0,69,852 0/0:29,0:29:81.24:0,81,1019 0/0:34,0:34:90.29:0,90,1163 0/0:54,0:54:99:0,144,1766 0/0:53,0:53:99:0,147,1876 0/0:56,0:56:99:0,144,1793 0/0:50,0:50:99:0,123,1613 0/0:51,1:52:99:0,103,1737 0/1:22,11:33:99:270,0,671 0/1:19,20:39:99:564,0,603 0/0:30,0:30:78.25:0,78,1059 0/0:16,0:16:48.14:0,48,596 0/0:34,0:34:96.30:0,96,1206 0/0:20,0:20:48.15:0,48,614 0/0:26,0:26:75.24:0,75,955 0/0:22,0:22:63.20:0,63,810 0/0:51,0:51:99:0,132,1713 0/0:33,0:33:75.24:0,75,990 0/0:24,0:24:72.23:0,72,909 0/0:31,0:31:87.27:0,87,1107 0/0:25,0:25:69.22:0,69,886 0/0:38,0:38:99:0,108,1322 0/0:25,1:26:46.53:0,47,855 0/0:24,0:24:72.23:0,72,918 0/0:24,0:24:69.21:0,69,880 0/0:34,0:34:90.28:0,90,1140 0/0:34,0:34:99:0,99,1269 14 22978335 . C T 58198.44 . AC=83;AF=0.988;AN=84;BaseQRankSum=-4.182;DP=1848;Dels=0.00;FS=1.619;HRun=0;HaplotypeScore=1.3968;InbreedingCoeff=-0.0120;MQ=59.42;MQ0=0;MQRankSum=-0.271;QD=31.49;ReadPosRankSum=3.784 GT:AD:DP:GQ:PL 1/1:0,37:38:96.29:1181,96,0 1/1:0,41:41:99:1255,102,0 1/1:0,26:26:69.21:851,69,0 1/1:0,66:66:99:1949,156,0 1/1:0,47:47:99:1536,123,0 1/1:0,61:62:99:1998,159,0 1/1:0,53:54:99:1732,138,0 0/1:27,27:54:99:739,0,713 1/1:0,41:41:99:1289,105,0 1/1:0,36:36:96.29:1166,96,0 1/1:0,41:41:99:1308,108,0 1/1:0,31:31:84.26:1039,84,0 1/1:0,37:37:99:1232,102,0 1/1:0,30:30:87.26:1046,87,0 1/1:0,135:136:99:4224,343,0 1/1:0,42:42:99:1374,114,0 1/1:0,39:39:99:1323,111,0 1/1:0,34:34:93.28:1121,93,0 1/1:0,49:49:99:1599,132,0 1/1:1,60:61:99:1957,162,0 1/1:0,53:53:99:1601,129,0 1/1:0,42:43:99:1384,117,0 1/1:0,59:59:99:1934,159,0 1/1:0,31:31:84.22:1019,84,0 1/1:1,57:58:99:1832,150,0 1/1:0,48:48:99:1462,117,0 1/1:0,18:18:51.16:624,51,0 1/1:0,40:40:99:1329,111,0 1/1:0,18:19:45.14:557,45,0 1/1:0,34:34:93.28:1129,93,0 1/1:0,24:24:57.18:726,57,0 1/1:0,56:56:99:1739,138,0 1/1:0,52:52:99:1662,138,0 1/1:0,41:41:99:1338,111,0 1/1:0,30:30:84.25:1011,84,0 1/1:0,35:35:93.26:1121,93,0 1/1:0,53:53:99:1721,138,0 1/1:0,45:45:99:1453,123,0 1/1:0,37:37:99:1230,102,0 1/1:0,36:36:96.29:1165,96,0 1/1:0,37:37:96.29:1159,96,0 1/1:0,33:34:87.27:1085,87,0 14 22988965 . G A 1024.46 . AC=4;AF=0.048;AN=84;BaseQRankSum=-5.456;DP=847;Dels=0.00;FS=1.273;HRun=0;HaplotypeScore=1.4566;InbreedingCoeff=-0.0502;MQ=58.59;MQ0=0;MQRankSum=0.091;QD=12.49;ReadPosRankSum=-0.063 GT:AD:DP:GQ:PL 0/0:24,0:24:66.21:0,66,843 0/0:7,0:7:21.07:0,21,270 0/0:13,0:13:39.10:0,39,474 0/0:42,0:42:96.31:0,96,1313 0/0:14,0:14:36.11:0,36,460 0/0:15,0:17:39.13:0,39,527 0/0:14,0:14:36.12:0,36,476 0/0:16,0:16:42.14:0,42,568 0/0:27,0:27:72.23:0,72,943 0/0:12,0:12:33.11:0,33,421 0/0:24,0:24:57.19:0,57,757 0/0:15,0:15:42.12:0,42,518 0/0:16,0:16:36.12:0,36,476 0/0:9,0:9:24.08:0,24,308 0/0:73,0:73:99:0,172,2247 0/0:17,0:17:45.14:0,45,578 0/0:22,0:22:54.17:0,54,706 0/0:17,0:17:45.14:0,45,571 0/0:38,0:38:93.29:0,93,1193 0/0:36,0:36:93.30:0,93,1214 0/1:9,11:20:99:262,0,198 0/0:18,0:18:45.15:0,45,598 0/0:21,0:21:57.19:0,57,776 0/0:11,0:11:30.10:0,30,407 0/0:20,0:20:57.18:0,57,752 0/0:21,0:21:57.19:0,57,771 0/0:12,0:13:30.10:0,30,395 0/0:18,0:18:48.15:0,48,621 0/0:15,0:15:42.11:0,42,504 0/0:17,0:17:39.12:0,39,500 0/0:10,0:10:30.10:0,30,388 0/1:9,13:22:99:392,0,276 0/0:29,0:29:75.24:0,75,976 0/0:27,0:27:72.23:0,72,932 0/0:15,0:15:39.11:0,39,495 0/0:11,0:11:30.09:0,30,382 0/1:15,8:23:99:194,0,434 0/1:7,10:17:99:263,0,208 0/0:20,0:20:57.18:0,57,734 0/0:15,0:15:36.11:0,36,460 0/0:17,0:17:42.12:0,42,537 0/0:14,0:14:42.14:0,42,545 14 22988972 . G C 2456.29 . AC=14;AF=0.167;AN=84;BaseQRankSum=-0.325;DP=844;Dels=0.00;FS=4.420;HRun=1;HaplotypeScore=1.3775;InbreedingCoeff=-0.0221;MQ=58.66;MQ0=0;MQRankSum=0.511;QD=13.14;ReadPosRankSum=-0.172 GT:AD:DP:GQ:PL 0/1:14,11:25:99:337,0,377 0/1:4,4:9:99:130,0,101 0/0:13,0:13:39.12:0,39,483 0/0:45,0:45:99:0,99,1381 0/0:15,0:15:39.12:0,39,513 0/1:11,8:19:99:241,0,282 0/1:5,6:11:99:205,0,124 0/1:10,6:16:99:204,0,275 0/0:23,0:23:66.21:0,66,852 0/1:10,1:11:4.69:5,0,351 0/0:24,0:24:63.20:0,63,813 0/0:10,0:10:30.10:0,30,383 0/0:14,0:14:30.09:0,30,388 0/0:12,0:12:33.10:0,33,410 0/0:75,0:75:99:0,181,2367 0/0:17,0:17:42.13:0,42,550 0/0:21,0:21:54.17:0,54,705 0/0:17,0:17:48.15:0,48,595 0/0:36,0:36:90.26:0,90,1150 0/0:33,0:33:87.28:0,87,1141 0/0:22,0:22:57.18:0,57,719 0/0:20,0:20:48.16:0,48,635 0/0:25,0:25:69.23:0,69,954 0/0:10,0:10:27.09:0,27,379 0/0:21,0:21:57.18:0,57,759 0/0:24,0:24:60.20:0,60,833 0/1:8,4:12:99:120,0,240 0/1:8,10:18:99:327,0,185 0/0:13,0:13:36.11:0,36,441 0/1:8,7:15:99:192,0,201 1/1:0,9:9:27.09:343,27,0 0/0:21,0:21:60.19:0,60,776 0/0:25,0:25:66.21:0,66,841 0/0:26,0:26:72.23:0,72,918 0/1:6,10:16:99:273,0,183 0/1:5,6:11:99:190,0,130 0/0:25,0:25:66.19:0,66,831 0/0:15,0:16:36.12:0,36,481 0/0:22,0:22:57.18:0,57,741 0/0:16,0:16:39.12:0,39,507 0/1:12,3:15:47.93:48,0,344 0/0:16,0:16:48.15:0,48,607 14 22997524 . A G 10628.63 . AC=47;AF=0.560;AN=84;BaseQRankSum=14.290;DP=640;Dels=0.00;FS=4.744;HRun=4;HaplotypeScore=0.2789;InbreedingCoeff=0.0204;MQ=58.99;MQ0=0;MQRankSum=-0.634;QD=22.66;ReadPosRankSum=-0.149 GT:AD:DP:GQ:PL 0/1:3,5:8:84.29:169,0,84 1/1:0,11:11:27.09:358,27,0 0/1:4,3:7:87.01:87,0,99 0/0:24,0:24:57.18:0,57,721 0/1:11,14:25:99:425,0,289 0/1:8,11:19:99:318,0,243 0/1:9,8:17:99:273,0,236 1/1:0,18:18:51.17:694,51,0 0/1:2,3:5:52.52:100,0,53 0/1:5,1:6:19.75:20,0,153 0/0:12,0:12:36.11:0,36,438 1/1:0,15:15:45.14:562,45,0 1/1:0,12:12:33.10:426,33,0 1/1:0,11:11:30.10:387,30,0 0/0:52,0:52:99:0,123,1568 0/0:16,0:16:42.13:0,42,521 0/1:6,6:12:99:170,0,159 1/1:0,11:11:30.09:385,30,0 1/1:0,24:24:63.20:810,63,0 1/1:0,28:28:69.22:900,69,0 0/1:12,16:28:99:433,0,351 1/1:0,10:10:27.09:353,27,0 0/0:21,0:21:60.19:0,60,745 0/1:7,13:20:99:409,0,207 1/1:0,17:17:45.15:618,45,0 0/1:5,14:19:99:296,0,141 0/1:2,2:4:29.55:30,0,61 0/1:4,1:5:22.75:23,0,131 0/1:12,1:13:1.88:0,3,372 0/1:6,3:9:88.60:89,0,190 1/1:0,9:9:27.09:347,27,0 0/1:17,12:29:99:303,0,440 0/0:11,0:11:27.08:0,27,343 0/1:6,3:9:42.04:42,0,171 1/1:0,8:8:21.07:273,21,0 0/1:8,10:18:99:319,0,207 0/0:23,0:23:57.18:0,57,714 0/0:12,0:12:33.09:0,33,395 0/1:2,2:4:61.92:67,0,62 0/1:2,10:12:43.27:319,0,43 0/1:4,9:13:76.45:237,0,76 1/1:0,10:10:30.10:387,30,0 14 23078810 . A T 3131.93 . AC=7;AF=0.083;AN=84;BaseQRankSum=-8.958;DP=1622;Dels=0.00;FS=5.084;HRun=0;HaplotypeScore=0.7437;InbreedingCoeff=-0.0909;MQ=59.66;MQ0=0;MQRankSum=-1.791;QD=13.21;ReadPosRankSum=-0.793 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,111,1371 0/1:15,16:31:99:368,0,454 0/1:15,11:26:99:301,0,384 0/0:54,0:54:99:0,153,1932 0/0:45,0:45:99:0,129,1649 0/0:34,0:34:87.28:0,87,1160 0/0:30,0:30:81.25:0,81,1038 0/0:45,0:45:99:0,123,1598 0/1:23,11:34:99:238,0,689 0/0:30,0:30:78.21:0,78,974 0/1:13,19:32:99:572,0,367 0/0:34,0:34:96.30:0,96,1205 0/0:26,0:26:75.23:0,75,922 0/0:33,0:33:93.29:0,93,1153 0/0:100,0:100:99:0,268,3317 0/0:30,0:30:87.26:0,87,1068 0/0:41,0:41:99:0,108,1357 0/0:24,0:24:63.20:0,63,795 0/0:45,0:45:99:0,123,1540 0/0:54,0:54:99:0,150,1871 0/0:40,0:40:99:0,117,1465 0/0:33,0:33:93.26:0,93,1128 0/0:58,0:58:99:0,163,2077 0/0:28,0:28:84.27:0,84,1080 0/0:37,0:37:99:0,102,1283 0/0:40,0:40:99:0,105,1362 0/1:17,13:30:99:359,0,519 0/0:43,0:43:99:0,117,1473 0/1:16,21:37:99:595,0,468 0/0:44,0:44:99:0,120,1475 0/0:28,0:28:84.26:0,84,1045 0/0:55,0:55:99:0,129,1671 0/0:34,0:34:96.28:0,96,1168 0/0:39,0:39:99:0,111,1381 0/1:19,28:47:99:813,0,540 0/0:42,0:42:99:0,114,1447 0/0:37,0:37:99:0,105,1317 0/0:25,0:26:72.22:0,72,893 0/0:34,0:34:99:0,99,1232 0/0:27,0:27:81.25:0,81,1006 0/0:28,0:28:78.25:0,78,987 0/0:48,0:48:99:0,135,1687 14 23235808 . G A 55295.31 . AC=28;AF=0.333;AN=84;BaseQRankSum=-44.346;DP=5671;DS;Dels=0.00;FS=2.619;HRun=0;HaplotypeScore=8.9941;InbreedingCoeff=-0.0714;MQ=59.21;MQ0=1;MQRankSum=0.771;QD=15.70;ReadPosRankSum=2.875 GT:AD:DP:GQ:PL 0/1:51,45:98:99:1145,0,1561 0/0:90,0:90:99:0,250,3106 0/0:80,0:80:99:0,217,2651 0/1:122,128:250:99:3331,0,3654 0/1:131,118:250:99:3013,0,3902 0/0:250,0:250:99:0,650,8670 0/1:104,107:214:99:2747,0,3133 0/0:212,0:212:99:0,554,7298 0/0:101,0:102:99:0,280,3534 0/1:44,54:98:99:1438,0,1259 0/1:53,63:117:99:1702,0,1541 0/0:96,0:97:99:0,259,3183 0/1:36,41:77:99:1029,0,1005 0/0:102,0:103:99:0,283,3578 0/1:129,118:249:99:3006,0,3707 0/0:75,0:75:99:0,214,2664 1/1:0,91:91:99:2831,253,0 0/0:89,1:90:99:0,213,3007 0/0:170,0:170:99:0,448,5650 0/0:202,0:204:99:0,530,6678 0/1:71,56:128:99:1465,0,1978 0/0:131,1:133:99:0,347,4504 1/1:0,250:250:99:7595,659,0 0/1:83,98:181:99:2631,0,2530 0/1:100,124:224:99:3166,0,2862 0/1:86,97:183:99:2459,0,2526 0/1:32,20:53:99:525,0,934 0/1:47,46:94:99:1161,0,1414 0/0:82,0:82:99:0,232,2917 0/0:104,0:104:99:0,277,3466 0/1:47,37:84:99:943,0,1391 0/1:88,96:185:99:2437,0,2530 0/1:56,68:124:99:1728,0,1625 1/1:1,98:99:99:3212,283,0 0/1:53,43:96:99:1158,0,1539 1/1:1,101:103:99:3171,259,0 0/1:89,70:162:99:1833,0,2486 0/1:54,59:113:99:1568,0,1498 0/0:102,0:102:99:0,289,3611 0/0:88,0:88:99:0,247,3050 0/0:86,0:86:99:0,235,2883 0/0:80,0:80:99:0,223,2744 14 23235885 . C CA 6165.73 . AC=2;AF=0.024;AN=84;BaseQRankSum=-14.929;DP=5987;DS;FS=6.814;HRun=4;HaplotypeScore=340.9688;InbreedingCoeff=-0.0244;MQ=59.18;MQ0=0;MQRankSum=1.588;QD=15.26;ReadPosRankSum=-1.262 GT:AD:DP:GQ:PL 0/0:85,0:85:99:0,208,2339 0/0:109,0:109:99:0,298,3347 0/0:105,0:104:99:0,286,3188 0/0:238,0:238:99:0,650,7326 0/0:250,0:250:99:0,670,7523 0/0:237,0:231:99:0,628,7064 0/0:194,0:189:99:0,523,5856 0/0:212,0:205:99:0,569,6415 0/0:116,0:116:99:0,313,3524 0/0:105,0:105:99:0,295,3297 0/0:100,0:100:99:0,285,3179 0/0:98,0:98:99:0,271,3057 0/0:81,0:81:99:0,208,2334 0/0:94,0:94:99:0,268,2992 0/0:250,0:250:99:0,653,7347 0/0:90,0:90:99:0,241,2700 0/0:116,0:116:99:0,331,3737 0/0:95,0:95:99:0,262,2954 0/1:127,77:204:99:2579,0,2947 0/1:99,101:200:99:3587,0,2296 0/0:197,0:197:99:0,541,6101 0/0:138,0:138:99:0,382,4285 0/0:246,0:245:99:0,668,7520 0/0:179,0:177:99:0,493,5545 0/0:203,0:197:99:0,566,6394 0/0:194,0:184:99:0,545,6135 0/0:76,0:76:99:0,217,2450 0/0:101,0:101:99:0,274,3081 0/0:75,0:75:99:0,208,2345 0/0:102,0:102:99:0,289,3251 0/0:91,0:91:99:0,256,2879 0/0:228,0:228:99:0,631,7086 0/0:128,0:128:99:0,352,3957 0/0:113,0:112:99:0,313,3534 0/0:107,0:106:99:0,298,3342 0/0:114,0:114:99:0,310,3479 0/0:224,0:224:99:0,605,6784 0/0:116,0:115:99:0,325,3677 0/0:106,0:106:99:0,298,3340 0/0:98,0:98:99:0,274,3070 0/0:93,0:93:99:0,256,2881 0/0:79,0:79:99:0,222,2492 14 23240713 . T TAGC 87500.47 . AC=26;AF=0.310;AN=84;BaseQRankSum=-41.242;DP=7908;DS;FS=5.706;HRun=0;HaplotypeScore=651.8602;InbreedingCoeff=-0.2255;MQ=58.41;MQ0=0;MQRankSum=-6.441;QD=19.50;ReadPosRankSum=-7.846 GT:AD:DP:GQ:PL 0/0:161,1:163:99:0,335,5672 0/0:166,0:166:99:0,376,5482 0/1:80,46:128:99:2727,0,1731 0/0:250,0:250:99:0,560,8101 0/0:235,0:234:99:0,572,8372 0/1:175,69:247:99:3984,0,4279 0/1:161,64:227:99:4124,0,3667 0/0:234,1:231:99:0,512,8246 1/1:61,109:179:99:7525,338,0 0/1:98,44:148:99:2832,0,2410 0/1:104,43:156:99:2967,0,2196 1/1:63,104:174:99:7263,361,0 0/1:96,36:136:99:2337,0,2168 0/1:118,47:166:99:2721,0,2719 0/1:173,57:248:99:4493,0,2561 0/1:72,48:123:99:2929,0,1109 0/0:167,0:168:99:0,394,5718 0/1:89,46:139:99:2962,0,1898 0/1:180,61:250:99:3804,0,4344 0/1:167,71:243:99:4390,0,3814 0/0:232,0:233:99:0,569,8182 0/0:160,0:160:99:0,355,5168 0/0:250,0:250:99:0,605,8754 0/0:226,0:223:99:0,536,7742 0/1:164,70:241:99:4401,0,3531 0/1:147,82:228:99:5073,0,2834 0/0:130,0:130:99:0,300,4400 0/1:110,42:156:99:2620,0,2450 0/1:127,44:175:99:2764,0,2827 0/1:132,46:179:99:2572,0,3167 0/1:100,36:139:99:2258,0,2183 0/0:234,0:234:99:0,575,8425 0/0:163,0:166:99:0,412,5875 0/0:154,0:154:99:0,379,5492 0/0:148,1:149:99:0,284,4933 0/0:170,0:170:99:0,388,5692 0/1:195,50:249:99:3324,0,4402 0/1:118,48:168:99:2845,0,2547 0/1:126,57:185:99:3604,0,3010 0/0:189,0:188:99:0,397,5798 0/0:140,0:140:99:0,215,4720 0/1:129,46:179:99:2982,0,3029 14 23240722 . C CAGA 26253.42 . AC=24;AF=0.286;AN=84;BaseQRankSum=52.532;DP=7956;DS;FS=9.213;HRun=0;HaplotypeScore=764.7398;InbreedingCoeff=-0.4000;MQ=58.43;MQ0=0;MQRankSum=-1.405;QD=5.85;ReadPosRankSum=16.755 GT:AD:DP:GQ:PL 0/0:176,0:176:99:0,484,7846 0/0:160,0:160:99:0,451,7202 0/1:142,0:140:99:902,0,3355 0/0:244,0:244:99:0,671,10819 0/0:250,0:249:99:0,710,11319 0/1:246,0:244:99:931,0,6832 0/1:234,0:230:99:1032,0,6370 0/0:238,0:233:99:0,653,10991 0/1:181,0:180:99:2643,0,1266 0/1:150,0:150:99:877,0,3804 0/1:159,0:159:99:859,0,3840 0/1:176,1:176:99:2676,0,1402 0/1:143,0:143:99:584,0,3773 0/1:166,0:166:99:896,0,4390 0/1:249,1:248:99:838,0,5633 0/1:119,2:120:99:1197,0,2113 0/0:168,0:167:99:0,475,7435 0/1:142,0:142:99:934,0,3353 0/1:250,0:249:99:998,0,6922 0/1:244,0:243:99:1349,0,6189 0/0:248,0:248:99:0,713,11200 0/0:156,0:156:99:0,433,6851 0/0:250,0:250:99:0,737,11891 0/0:225,0:223:99:0,650,10363 0/1:223,0:221:99:1207,0,5658 0/1:227,0:222:99:1399,0,5284 0/0:142,0:142:99:0,401,6141 0/1:157,1:157:99:864,0,4038 0/1:169,0:168:99:834,0,4565 0/1:179,0:178:99:810,0,4891 0/1:137,0:137:99:690,0,3607 0/0:244,0:244:99:0,692,10992 0/0:176,0:176:99:0,512,7983 0/0:164,0:164:99:0,469,7413 0/0:153,0:153:99:0,415,6846 0/0:160,0:160:99:0,454,7293 0/1:249,1:249:99:818,0,6746 0/1:162,0:161:99:909,0,4099 0/1:189,0:189:99:1070,0,4803 0/0:176,0:176:99:0,505,7879 0/0:142,0:142:99:0,418,6539 0/1:183,0:184:99:936,0,4800 14 23240726 . A AGCC 28137.35 . 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A G 12254.01 . 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T C 30050.33 . 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C G 12841.73 . 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G A 26252.83 . 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G A 39.12 . 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C T 58629.69 . 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A G 250.76 . 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C T 3746.99 . 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G T 821.70 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.741;DP=3781;Dels=0.00;FS=0.718;HRun=2;HaplotypeScore=3.0434;InbreedingCoeff=-0.0120;MQ=59.33;MQ0=0;MQRankSum=2.252;QD=12.84;ReadPosRankSum=-0.349 GT:AD:DP:GQ:PL 0/0:79,0:79:99:0,220,2749 0/0:60,0:60:99:0,159,1996 0/0:48,0:48:99:0,120,1512 0/0:202,0:202:99:0,527,6960 0/0:147,1:148:99:0,415,5441 0/0:122,0:122:99:0,313,4178 0/0:95,0:95:99:0,247,3270 0/0:115,1:116:99:0,322,4227 0/0:61,0:61:99:0,172,2150 0/1:34,30:64:99:868,0,866 0/0:65,0:65:99:0,178,2184 0/0:57,0:57:99:0,153,1901 0/0:52,0:52:99:0,147,1852 0/0:79,1:81:99:0,214,2708 0/0:205,0:206:99:0,554,6830 0/0:63,0:63:99:0,187,2296 0/0:58,0:58:99:0,163,2010 0/0:68,0:68:99:0,196,2396 0/0:109,0:109:99:0,286,3562 0/0:151,0:151:99:0,406,5122 0/0:102,2:104:99:0,265,3357 0/0:75,0:75:99:0,208,2599 0/0:197,2:199:99:0,533,7043 0/0:100,1:101:99:0,259,3425 0/0:134,0:135:99:0,358,4680 0/0:87,0:87:99:0,238,3134 0/0:52,0:52:99:0,138,1740 0/0:73,0:73:99:0,190,2374 0/0:60,0:60:99:0,153,1912 0/0:78,0:78:99:0,223,2754 0/0:64,0:64:99:0,187,2279 0/0:146,1:147:99:0,385,4826 0/0:86,0:87:99:0,238,2956 0/0:64,0:64:99:0,178,2218 0/0:76,0:76:99:0,211,2552 0/0:66,0:66:99:0,187,2320 0/0:85,0:85:99:0,229,2851 0/0:67,0:67:99:0,184,2291 0/0:74,1:75:99:0,202,2510 0/0:58,0:58:99:0,159,1967 0/0:56,2:58:87.26:0,87,1851 0/0:65,0:65:99:0,187,2300 14 23652004 . G A 11948.56 . AC=16;AF=0.190;AN=84;BaseQRankSum=11.590;DP=2974;Dels=0.00;FS=11.084;HRun=1;HaplotypeScore=1.3565;InbreedingCoeff=-0.0809;MQ=59.58;MQ0=0;MQRankSum=-0.842;QD=14.02;ReadPosRankSum=0.515 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,102,1194 0/1:21,14:35:99:387,0,584 1/1:0,30:30:90.28:1096,90,0 0/0:235,0:235:99:0,689,8177 0/0:193,0:194:99:0,572,6882 0/0:155,1:156:99:0,436,5218 0/0:107,0:107:99:0,319,3823 0/0:128,0:128:99:0,364,4365 0/0:44,0:44:99:0,120,1335 0/0:42,0:42:99:0,123,1362 0/0:35,0:35:99:0,102,1144 0/0:39,0:39:99:0,114,1235 0/1:19,18:37:99:494,0,507 0/0:47,0:47:99:0,132,1509 0/1:85,66:151:99:1807,0,2318 0/1:14,20:34:99:598,0,325 0/1:22,22:44:99:682,0,558 0/0:40,0:40:99:0,120,1324 0/0:62,0:63:99:0,177,1904 0/0:108,0:108:99:0,286,3218 0/1:45,43:88:99:1191,0,1187 0/1:25,26:51:99:800,0,580 0/0:188,0:188:99:0,539,6502 0/0:111,0:111:99:0,319,3848 0/0:128,0:128:99:0,373,4489 0/1:70,56:126:99:1598,0,1970 0/0:24,0:24:66.14:0,66,717 0/1:20,23:43:99:640,0,506 0/0:40,0:40:99:0,117,1274 0/1:13,16:29:99:491,0,320 0/0:37,0:37:99:0,105,1175 0/0:71,0:71:99:0,211,2320 0/1:33,17:50:99:440,0,938 0/0:31,0:31:93.19:0,93,994 0/0:44,1:45:99:0,123,1374 0/0:32,0:32:96.27:0,96,1094 0/0:78,0:79:99:0,226,2451 0/1:26,21:47:99:592,0,639 0/0:32,0:32:93.24:0,93,1045 0/1:24,16:40:99:461,0,625 0/0:27,0:27:78.21:0,78,874 0/1:25,22:47:99:671,0,624 14 23821361 . G A 870.18 . AC=5;AF=0.060;AN=84;BaseQRankSum=-2.996;DP=310;Dels=0.00;FS=5.990;HRun=0;HaplotypeScore=0.3532;InbreedingCoeff=0.1534;MQ=58.29;MQ0=0;MQRankSum=1.997;QD=14.04;ReadPosRankSum=0.875 GT:AD:DP:GQ:PL 0/0:3,0:3:9.03:0,9,108 0/0:3,0:3:9.02:0,9,106 0/0:7,0:7:21.06:0,21,252 0/1:12,7:19:99:215,0,346 0/1:9,11:20:99:358,0,262 0/1:4,2:6:50.48:50,0,131 0/0:5,0:5:15.05:0,15,199 0/0:11,0:11:27.09:0,27,373 0/0:11,0:11:30.10:0,30,393 0/0:4,0:4:9.02:0,9,102 0/0:5,0:5:15.05:0,15,185 0/0:7,0:7:21.07:0,21,266 0/0:9,0:9:18.06:0,18,247 0/0:3,0:3:6.02:0,6,84 0/0:18,0:18:54.16:0,54,667 0/0:11,0:11:33.09:0,33,406 0/0:3,0:3:9.03:0,9,113 0/0:4,0:4:12.04:0,12,149 0/0:4,0:4:12.04:0,12,155 0/0:7,0:7:15.05:0,15,206 0/0:11,0:11:33.10:0,33,410 0/1:5,8:13:99:221,0,150 0/0:19,0:19:51.16:0,51,679 0/0:10,0:10:30.10:0,30,395 0/0:7,0:7:18.06:0,18,240 0/0:10,0:10:24.08:0,24,336 0/0:2,0:2:6.02:0,6,76 0/0:5,0:5:15.04:0,15,177 0/1:0,4:4:0.26:132,12,0 0/0:6,0:6:18.06:0,18,230 0/0:7,0:7:21.07:0,21,265 0/0:10,0:10:24.08:0,24,320 0/0:2,0:2:6.02:0,6,73 0/0:3,0:3:9.03:0,9,106 0/0:4,0:4:12.03:0,12,139 0/0:5,0:5:12.04:0,12,156 0/0:4,0:4:12.04:0,12,156 0/0:9,0:9:24.07:0,24,296 0/0:2,0:2:6.02:0,6,79 0/0:5,0:5:15.05:0,15,186 0/0:2,0:2:6.02:0,6,76 0/0:10,0:10:27.08:0,27,338 14 23828091 . C T 860.39 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.427;DP=2784;Dels=0.00;FS=0.584;HRun=0;HaplotypeScore=2.3414;InbreedingCoeff=-0.0121;MQ=59.39;MQ0=0;MQRankSum=0.130;QD=8.35;ReadPosRankSum=0.828 GT:AD:DP:GQ:PL 0/0:28,0:28:81.23:0,81,951 0/0:36,0:36:84.20:0,84,991 0/0:30,0:30:78.22:0,78,937 0/0:208,0:208:99:0,497,6498 0/0:180,0:180:99:0,442,5747 0/0:136,0:136:99:0,328,4219 0/0:112,0:112:99:0,286,3602 0/0:132,0:132:99:0,322,4150 0/0:34,0:34:90.23:0,90,1051 0/0:29,0:29:78.23:0,78,949 0/0:36,0:36:96.28:0,96,1149 0/0:20,0:20:51.16:0,51,634 0/0:34,0:34:96.23:0,96,1098 0/0:39,0:39:99:0,117,1317 0/0:157,0:157:99:0,397,4718 0/0:46,0:46:99:0,126,1477 0/0:37,0:37:96.25:0,96,1123 0/0:26,0:26:75.19:0,75,887 0/0:68,0:68:99:0,171,2036 0/0:101,0:101:99:0,259,3075 0/0:91,0:91:99:0,232,2730 0/0:50,0:50:99:0,126,1502 0/0:215,0:215:99:0,521,6809 0/0:106,0:106:99:0,262,3373 0/0:98,0:99:99:0,262,3318 0/1:61,42:103:99:907,0,1747 0/0:20,0:20:57.16:0,57,668 0/0:30,0:30:78.21:0,78,909 0/0:26,1:27:38.47:0,38,702 0/0:20,0:21:57.14:0,57,657 0/0:30,0:30:81.23:0,81,954 0/0:94,0:94:99:0,238,2805 0/0:61,0:61:99:0,156,1841 0/0:29,0:29:84.21:0,84,955 0/0:29,0:29:72.19:0,72,873 0/0:35,0:35:99:0,99,1139 0/0:85,0:86:99:0,220,2534 0/0:35,0:35:93.26:0,93,1099 0/0:40,0:40:99:0,117,1371 0/0:31,0:31:78.23:0,78,954 0/0:28,0:28:72.21:0,72,873 0/0:35,0:35:90.27:0,90,1100 14 23829958 . G A 1210.17 . AC=4;AF=0.048;AN=84;BaseQRankSum=-5.603;DP=1462;Dels=0.00;FS=1.900;HRun=1;HaplotypeScore=1.0512;InbreedingCoeff=-0.0500;MQ=58.77;MQ0=0;MQRankSum=-0.293;QD=14.07;ReadPosRankSum=-0.177 GT:AD:DP:GQ:PL 0/1:9,8:17:99:242,0,273 0/1:9,15:24:99:429,0,216 0/0:12,0:12:36.11:0,36,439 0/0:81,0:81:99:0,220,2927 0/0:66,0:66:99:0,163,2176 0/0:42,0:43:99:0,117,1556 0/0:34,0:34:99:0,99,1331 0/0:42,0:42:99:0,114,1528 0/0:16,0:16:45.14:0,45,573 0/0:21,0:21:60.17:0,60,707 0/0:26,0:26:69.22:0,69,887 0/0:22,0:22:66.21:0,66,832 0/0:18,0:18:45.15:0,45,592 0/0:23,0:23:60.19:0,60,769 0/0:87,0:87:99:0,226,2875 0/0:28,0:28:78.24:0,78,967 0/0:29,0:29:81.25:0,81,1034 0/0:23,0:23:60.19:0,60,757 0/0:36,0:36:96.30:0,96,1206 0/0:70,0:70:99:0,172,2204 0/0:56,0:57:99:0,144,1817 0/0:31,0:31:87.27:0,87,1092 0/0:68,0:69:99:0,193,2548 0/0:38,0:39:99:0,99,1339 0/0:53,0:53:99:0,141,1901 0/0:44,0:44:99:0,123,1616 0/0:22,0:22:54.17:0,54,701 0/0:26,0:26:66.18:0,66,803 0/0:12,0:12:33.08:0,33,395 0/1:17,13:30:99:309,0,470 0/1:5,10:15:99:317,0,147 0/0:63,0:63:99:0,171,2120 0/0:37,0:37:99:0,99,1248 0/0:23,0:23:66.21:0,66,819 0/0:12,0:12:36.11:0,36,456 0/0:27,0:27:63.20:0,63,835 0/0:51,0:51:99:0,129,1634 0/0:27,0:27:72.22:0,72,895 0/0:25,0:25:69.21:0,69,866 0/0:34,0:34:93.28:0,93,1147 0/0:25,0:25:63.20:0,63,800 0/0:22,0:22:60.20:0,60,789 14 23830042 . T C 10683.05 . AC=31;AF=0.369;AN=84;BaseQRankSum=7.823;DP=1041;Dels=0.00;FS=2.229;HRun=1;HaplotypeScore=0.7881;InbreedingCoeff=-0.0727;MQ=58.64;MQ0=0;MQRankSum=-2.609;QD=15.90;ReadPosRankSum=-1.387 GT:AD:DP:GQ:PL 0/0:18,0:18:45.13:0,45,545 0/1:10,11:21:99:254,0,273 1/1:0,17:17:48.13:578,48,0 0/1:34,37:73:99:983,0,898 1/1:0,42:42:99:1408,111,0 0/1:11,20:31:99:594,0,319 0/1:14,10:24:99:300,0,419 0/0:26,0:28:75.23:0,75,924 0/0:17,0:17:48.13:0,48,553 0/1:9,4:13:99:105,0,234 0/0:12,0:12:36.11:0,36,424 0/0:14,0:14:39.09:0,39,456 0/1:11,5:16:99:143,0,301 0/0:19,0:19:48.14:0,48,588 0/1:30,26:57:99:704,0,764 0/1:11,11:22:99:257,0,309 0/1:11,6:17:99:146,0,335 0/1:10,5:15:99:139,0,314 0/1:17,15:32:99:377,0,412 0/1:17,28:45:99:773,0,479 0/0:29,0:29:66.20:0,66,819 0/1:13,9:22:99:281,0,310 0/0:59,0:59:99:0,132,1683 0/1:20,6:26:99:142,0,608 0/0:29,0:30:78.22:0,78,949 0/1:27,16:43:99:404,0,752 1/1:0,10:10:27.08:343,27,0 0/1:2,16:18:17.20:518,0,17 1/1:0,18:18:42.12:511,42,0 0/0:15,0:16:45.14:0,45,535 0/0:19,0:19:54.16:0,54,646 0/0:35,0:36:90.27:0,90,1090 0/1:7,8:15:99:260,0,202 0/1:9,8:17:99:191,0,237 1/1:0,12:12:30.09:377,30,0 0/0:22,0:22:60.18:0,60,740 0/1:21,18:39:99:516,0,529 0/0:20,0:21:54.15:0,54,639 0/1:8,7:15:99:181,0,222 0/0:16,0:16:45.11:0,45,535 0/0:13,0:13:30.09:0,30,365 0/1:6,6:12:99:199,0,141 14 23847988 . T C 7.71 . AC=3;AF=0.036;AN=84;BaseQRankSum=-8.186;DP=695;Dels=0.00;FS=80.437;HRun=2;HaplotypeScore=0.8058;InbreedingCoeff=-0.0579;MQ=58.55;MQ0=0;MQRankSum=-1.385;QD=0.18;ReadPosRankSum=-0.870 GT:AD:DP:GQ:PL 0/0:12,2:14:33.09:0,33,380 0/0:10,1:11:30.09:0,30,361 0/1:4,3:7:17.59:18,0,99 0/0:21,13:34:29.58:0,30,652 0/0:18,4:22:24.46:0,24,566 0/0:16,3:19:45.12:0,45,553 0/0:15,3:18:42.11:0,42,504 0/0:16,4:20:36.09:0,36,421 0/0:12,1:13:8.38:0,8,319 0/0:11,1:12:27.08:0,27,320 0/0:10,2:12:30.09:0,30,359 0/0:13,1:14:33.10:0,33,399 0/0:9,0:9:27.08:0,27,320 0/0:15,2:18:14.41:0,14,359 0/0:23,4:27:60.18:0,60,724 0/0:11,1:12:27.05:0,27,305 0/0:11,2:13:21.06:0,21,250 0/0:9,0:9:21.06:0,21,253 0/0:20,2:22:20.54:0,21,545 0/0:28,3:31:69.18:0,69,811 0/0:19,4:23:31.47:0,31,613 0/0:18,2:20:23.49:0,23,564 0/0:22,8:30:60.16:0,60,710 0/0:9,0:9:24.08:0,24,307 0/0:19,6:25:24.47:0,24,575 0/0:14,1:16:30.07:0,30,346 0/0:7,4:11:1.05:6,0,191 0/0:8,2:10:21.07:0,21,259 0/0:12,7:19:33.10:0,33,406 0/0:13,2:15:27.08:0,27,321 0/0:10,3:13:2.77:1,0,305 0/0:30,4:34:78.21:0,78,934 0/0:16,5:21:45.13:0,45,540 0/0:10,1:11:27.04:0,27,295 0/0:11,1:12:27.05:0,27,315 0/0:12,0:12:36.10:0,36,425 0/1:21,5:26:23.61:24,0,639 0/0:5,3:8:12.04:0,12,142 0/0:10,3:13:24.08:0,24,298 0/1:6,3:9:38.07:38,0,175 0/0:7,2:9:21.06:0,21,244 0/0:11,1:12:24.08:0,24,298 14 23866440 . G A 1869.80 . AC=1;AF=0.012;AN=84;BaseQRankSum=-7.994;DP=5538;DS;Dels=0.00;FS=2.284;HRun=0;HaplotypeScore=2.4930;InbreedingCoeff=-0.0120;MQ=59.23;MQ0=0;MQRankSum=0.404;QD=15.98;ReadPosRankSum=-1.549 GT:AD:DP:GQ:PL 0/0:118,0:118:99:0,307,3799 0/0:112,0:112:99:0,289,3615 0/0:117,0:117:99:0,313,3912 0/0:178,1:179:99:0,491,6415 0/0:165,0:165:99:0,454,6059 0/0:189,0:189:99:0,503,6637 0/0:151,0:151:99:0,397,5313 0/0:163,0:163:99:0,436,5734 0/0:112,0:112:99:0,298,3759 0/0:99,0:99:99:0,268,3306 0/0:97,0:97:99:0,250,3160 0/0:95,0:96:99:0,265,3247 0/0:82,1:83:99:0,178,2597 0/0:95,0:95:99:0,247,3029 0/0:229,0:230:99:0,626,7720 0/0:98,0:98:99:0,277,3415 0/0:102,0:102:99:0,283,3491 0/0:95,1:96:99:0,268,3296 0/0:178,0:179:99:0,481,5908 0/0:191,1:192:99:0,491,6275 0/0:166,0:166:99:0,445,5470 0/0:133,0:133:99:0,343,4218 0/0:193,0:193:99:0,509,6823 0/0:139,0:139:99:0,379,4996 0/0:201,0:201:99:0,515,6932 0/0:151,0:151:99:0,406,5419 0/0:83,0:83:99:0,220,2757 0/0:91,0:91:99:0,250,3095 0/0:93,0:93:99:0,265,3221 0/0:105,0:105:99:0,283,3518 0/0:136,0:136:99:0,364,4505 0/0:201,0:201:99:0,506,6451 0/0:131,0:132:99:0,355,4425 0/0:94,0:94:99:0,268,3258 0/1:50,67:117:99:1916,0,1359 0/0:133,0:133:99:0,352,4409 0/0:194,0:195:99:0,524,6353 0/0:107,0:108:99:0,283,3490 0/0:97,0:97:99:0,271,3348 0/0:103,0:103:99:0,274,3415 0/0:83,0:83:99:0,226,2785 0/0:111,0:111:99:0,304,3718 14 23874889 . C T 795.42 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.188;DP=4212;DS;Dels=0.00;FS=1.664;HRun=1;HaplotypeScore=2.8831;InbreedingCoeff=-0.0120;MQ=59.32;MQ0=0;MQRankSum=0.125;QD=10.61;ReadPosRankSum=-0.952 GT:AD:DP:GQ:PL 0/1:44,31:75:99:842,0,1151 0/0:86,0:86:99:0,247,3020 0/0:87,0:87:99:0,244,2980 0/0:127,0:127:99:0,343,4545 0/0:142,0:142:99:0,388,5166 0/0:110,0:110:99:0,310,4036 0/0:95,0:95:99:0,253,3390 0/0:99,0:99:99:0,265,3436 0/0:72,0:72:99:0,205,2472 0/0:88,0:88:99:0,232,2858 0/0:73,0:73:99:0,205,2452 0/0:86,0:86:99:0,238,2888 0/0:66,0:66:99:0,190,2307 0/0:84,0:84:99:0,238,2890 0/0:250,0:250:99:0,650,8054 0/0:60,0:60:99:0,175,2117 0/0:86,0:87:99:0,241,2986 0/0:81,0:81:99:0,229,2828 0/0:133,0:133:99:0,352,4389 0/0:144,0:144:99:0,379,4722 0/0:138,0:138:99:0,382,4640 0/0:95,0:96:99:0,262,3220 0/0:175,0:175:99:0,500,6603 0/0:100,1:101:99:0,252,3725 0/0:110,0:111:99:0,301,4021 0/0:84,1:85:99:0,206,3015 0/0:56,0:56:99:0,159,1955 0/0:92,0:94:99:0,262,3178 0/0:67,0:67:99:0,196,2327 0/0:88,0:88:99:0,253,3106 0/0:88,0:88:99:0,244,2936 0/0:166,0:166:99:0,451,5605 0/0:119,0:119:99:0,322,3955 0/0:78,0:78:99:0,223,2734 0/0:91,0:91:99:0,253,3116 0/0:74,0:74:99:0,208,2540 0/0:138,0:138:99:0,379,4704 0/0:88,0:88:99:0,250,3003 0/0:85,0:85:99:0,238,2961 0/0:75,0:75:99:0,223,2700 0/0:69,0:69:99:0,199,2427 0/0:85,0:85:99:0,238,2827 14 23876267 . C T 40377.39 . AC=13;AF=0.155;AN=84;BaseQRankSum=-26.717;DP=9701;DS;Dels=0.00;FS=4.480;HRun=0;HaplotypeScore=5.4004;InbreedingCoeff=-0.0011;MQ=59.50;MQ0=0;MQRankSum=-0.467;QD=14.47;ReadPosRankSum=0.349 GT:AD:DP:GQ:PL 0/0:245,0:245:99:0,653,8189 0/0:227,0:227:99:0,611,7756 0/0:214,0:214:99:0,569,7258 0/0:250,0:250:99:0,728,9608 0/0:250,0:250:99:0,716,9456 0/0:250,0:250:99:0,680,8867 0/0:249,0:250:99:0,704,9288 0/0:248,1:249:99:0,677,9190 0/0:246,0:246:99:0,659,8375 0/0:213,0:213:99:0,566,7150 0/0:232,0:233:99:0,602,7661 0/0:222,0:222:99:0,611,7727 0/0:180,0:180:99:0,475,6026 0/0:234,0:234:99:0,617,7844 0/0:249,0:250:99:0,665,8183 0/0:185,0:186:99:0,497,6286 0/0:238,0:238:99:0,617,7834 0/0:210,0:210:99:0,572,7225 0/1:154,95:250:99:2510,0,4279 0/1:136,113:250:99:3203,0,4002 0/1:133,117:250:99:3247,0,3820 0/1:131,94:226:99:2518,0,3919 0/1:118,132:250:99:3960,0,3771 0/0:248,1:250:99:0,626,8514 0/0:250,0:250:99:0,680,8937 0/0:249,1:250:99:0,661,8986 0/0:190,0:190:99:0,502,6303 0/0:241,0:241:99:0,614,7902 0/0:218,0:218:99:0,572,7291 1/1:1,214:215:99:7148,542,0 0/1:107,90:197:99:2609,0,3166 0/0:250,0:250:99:0,701,8810 0/1:127,109:237:99:2931,0,3742 0/1:122,96:218:99:2691,0,3595 0/0:224,4:228:99:0,483,7344 0/1:100,117:219:99:3169,0,2917 0/1:136,112:250:99:3239,0,3681 0/1:114,115:229:99:3153,0,3313 0/0:215,1:216:99:0,547,7347 0/0:240,0:240:99:0,638,8016 0/0:205,0:205:99:0,554,6967 0/0:224,0:224:99:0,602,7617 14 23887614 . G A 114.02 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.724;DP=1343;Dels=0.00;FS=1.566;HRun=0;HaplotypeScore=0.7830;InbreedingCoeff=-0.0121;MQ=56.21;MQ0=4;MQRankSum=2.640;QD=5.18;ReadPosRankSum=-0.836 GT:AD:DP:GQ:PL 0/0:17,0:17:45.14:0,45,559 0/0:19,0:19:54.16:0,54,651 0/0:23,0:23:66.19:0,66,808 0/0:50,0:50:99:0,138,1780 0/0:75,0:75:99:0,193,2513 0/0:34,0:34:87.26:0,87,1100 0/0:21,0:21:54.17:0,54,706 0/0:34,0:34:90.26:0,90,1163 0/0:28,0:28:75.23:0,75,918 0/0:28,0:28:81.24:0,81,993 0/1:15,7:22:99:160,0,395 0/0:27,0:27:75.19:0,75,884 0/0:14,0:15:33.10:0,33,417 0/0:24,0:24:69.17:0,69,816 0/0:76,0:76:99:0,199,2410 0/0:31,0:32:81.21:0,81,956 0/0:29,0:29:75.21:0,75,908 0/0:29,0:29:78.23:0,78,952 0/0:49,0:50:99:0,135,1622 0/0:50,0:50:99:0,123,1559 0/0:42,0:43:99:0,102,1293 0/0:26,0:26:69.20:0,69,835 0/0:63,0:63:99:0,169,2193 0/0:26,0:26:69.22:0,69,885 0/0:30,1:31:56.59:0,57,1023 0/0:35,0:36:84.26:0,84,1087 0/0:16,0:16:39.11:0,39,480 0/0:26,0:26:69.19:0,69,818 0/0:28,0:28:75.21:0,75,899 0/0:18,0:19:45.13:0,45,550 0/0:20,0:20:60.15:0,60,719 0/0:53,1:54:94.13:0,94,1525 0/0:42,0:42:99:0,111,1311 0/0:28,0:28:72.20:0,72,866 0/0:16,0:16:39.12:0,39,476 0/0:20,0:20:54.16:0,54,669 0/0:45,0:46:99:0,105,1329 0/0:22,1:23:33.55:0,34,698 0/0:25,0:25:69.21:0,69,853 0/0:27,0:27:63.19:0,63,773 0/0:23,0:23:60.18:0,60,747 0/0:22,0:22:66.16:0,66,772 14 24029214 . C T 3.05 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.205;DP=630;Dels=0.00;FS=7.635;HRun=0;HaplotypeScore=0.6988;InbreedingCoeff=-0.0129;MQ=59.21;MQ0=0;MQRankSum=0.137;QD=0.25;ReadPosRankSum=0.352 GT:AD:DP:GQ:PL 0/0:11,0:11:33.11:0,33,419 0/0:6,0:6:18.06:0,18,221 0/0:12,0:12:33.09:0,33,394 0/0:23,0:23:57.17:0,57,727 0/0:33,0:33:87.23:0,87,1059 0/0:10,0:10:30.09:0,30,381 0/0:16,0:16:39.11:0,39,492 0/0:22,0:22:57.14:0,57,713 0/0:9,0:9:21.07:0,21,263 0/0:13,0:13:33.10:0,33,414 0/0:14,0:14:42.11:0,42,484 0/0:12,0:12:30.08:0,30,363 0/0:8,0:8:21.07:0,21,271 0/0:12,0:12:33.09:0,33,401 0/0:43,0:43:99:0,108,1306 0/0:12,0:12:33.10:0,33,396 0/0:9,0:9:27.08:0,27,324 0/0:10,0:10:27.09:0,27,340 0/0:12,0:14:33.10:0,33,404 0/0:23,0:23:60.18:0,60,746 0/1:10,2:12:46.28:46,0,271 0/0:12,0:12:33.11:0,33,425 0/0:34,0:34:84.25:0,84,1056 0/0:26,0:26:60.16:0,60,785 0/0:19,0:19:45.12:0,45,571 0/0:11,0:11:33.10:0,33,409 0/0:12,0:12:33.11:0,33,422 0/0:8,0:8:21.07:0,21,263 0/0:12,0:12:30.10:0,30,389 0/0:15,0:15:42.10:0,42,498 0/0:14,0:14:39.11:0,39,464 0/0:20,0:20:54.17:0,54,702 0/0:12,0:12:30.09:0,30,380 0/0:8,0:8:24.07:0,24,292 0/0:10,0:10:24.07:0,24,303 0/0:10,0:10:30.09:0,30,358 0/0:12,0:12:33.07:0,33,375 0/0:9,0:9:24.07:0,24,292 0/0:10,0:10:27.08:0,27,320 0/0:12,0:13:33.11:0,33,426 0/0:26,0:26:66.20:0,66,834 0/0:13,0:13:36.11:0,36,450 14 24424346 . G A 371.06 . AC=6;AF=0.071;AN=84;BaseQRankSum=-6.269;DP=2371;Dels=0.00;FS=2.247;HRun=1;HaplotypeScore=1.9950;InbreedingCoeff=-0.0771;MQ=38.85;MQ0=353;MQRankSum=-7.968;QD=1.25;ReadPosRankSum=1.622 GT:AD:DP:GQ:PL 0/0:44,3:47:77.54:0,78,1109 0/1:34,15:49:99:211,0,760 0/0:41,5:46:14.20:0,14,892 0/0:86,0:86:99:0,189,2211 0/0:93,0:93:99:0,211,2497 0/0:68,0:69:99:0,153,1845 0/0:57,0:57:99:0,126,1493 0/0:67,0:67:99:0,150,1786 0/0:45,0:45:99:0,105,1159 0/0:41,0:41:90.19:0,90,988 0/1:33,7:40:71.81:72,0,740 0/0:43,3:46:55.94:0,56,1150 0/1:32,7:39:48.12:48,0,781 0/0:50,0:50:99:0,111,1209 0/0:128,1:129:99:0,254,3208 0/0:57,0:57:99:0,129,1395 0/0:51,1:52:99:0,99,1078 0/0:42,0:42:96.24:0,96,1095 0/0:77,7:84:32.43:0,32,1844 0/0:76,7:83:32.57:0,33,1928 0/0:66,0:67:99:0,141,1565 0/0:59,0:59:99:0,135,1613 0/0:122,0:122:99:0,262,3109 0/0:44,0:44:99:0,105,1242 0/0:56,0:57:99:0,126,1568 0/0:45,0:45:96.22:0,96,1084 0/0:35,0:35:75.20:0,75,902 0/0:35,0:35:75.16:0,75,822 0/0:40,0:40:93.17:0,93,990 0/0:41,0:41:81.21:0,81,925 0/0:39,0:39:69.18:0,69,809 0/0:87,0:87:99:0,180,2129 0/0:66,0:66:99:0,156,1813 0/0:42,0:42:93.18:0,93,1047 0/0:35,0:35:81.17:0,81,880 0/0:52,0:52:99:0,111,1185 0/1:62,16:78:90.73:91,0,1462 0/0:31,0:31:66.15:0,66,739 0/1:38,5:43:16.50:17,0,802 0/0:42,0:42:87.21:0,87,1003 0/1:37,11:48:38.16:38,0,824 0/0:41,0:41:99:0,102,1158 14 24424367 . G A 3946.26 . AC=9;AF=0.107;AN=84;BaseQRankSum=-1.251;DP=1798;Dels=0.00;FS=1.024;HRun=0;HaplotypeScore=1.6369;InbreedingCoeff=-0.0689;MQ=44.65;MQ0=88;MQRankSum=-1.272;QD=11.15;ReadPosRankSum=1.351 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,111,1246 0/1:30,10:40:99:202,0,696 0/1:18,15:33:99:365,0,404 0/0:60,0:60:99:0,156,1780 0/0:70,0:70:99:0,192,2277 0/0:56,0:56:99:0,147,1751 0/0:43,0:43:99:0,105,1258 0/1:20,26:46:99:585,0,478 0/0:29,0:29:84.19:0,84,952 0/0:28,0:28:72.15:0,72,783 0/0:37,0:37:99:0,102,1070 0/1:4,34:38:5.41:963,0,5 0/1:15,16:31:99:451,0,384 0/1:16,13:29:99:333,0,410 0/0:101,1:103:99:0,214,2852 0/0:44,0:44:99:0,123,1354 0/0:40,0:40:99:0,105,1137 0/0:28,0:28:81.19:0,81,911 0/0:67,0:67:99:0,180,1983 0/0:68,0:68:99:0,165,1881 0/0:43,0:44:93.22:0,93,1043 0/0:41,0:41:96.26:0,96,1158 0/0:83,0:83:99:0,217,2594 0/0:30,0:30:81.18:0,81,936 0/0:47,0:47:99:0,120,1423 0/0:32,0:32:90.20:0,90,1029 0/0:30,0:30:75.17:0,75,858 0/0:18,0:18:51.12:0,51,564 0/0:37,0:37:99:0,99,1049 0/0:23,0:23:66.15:0,66,733 0/0:40,0:40:93.24:0,93,1087 0/0:68,0:69:99:0,171,1963 0/0:45,0:45:99:0,123,1445 0/0:31,0:31:78.18:0,78,888 0/0:35,0:35:90.21:0,90,1000 0/1:31,13:44:99:180,0,878 0/1:33,28:61:99:609,0,695 0/0:19,0:19:51.12:0,51,575 0/1:22,10:32:99:257,0,545 0/0:33,0:33:78.21:0,78,927 0/0:33,0:33:90.19:0,90,986 0/0:35,0:35:93.24:0,93,1083 14 24505722 . C G 9766.46 . AC=27;AF=0.321;AN=84;BaseQRankSum=9.774;DP=1087;Dels=0.00;FS=1.072;HRun=2;HaplotypeScore=1.1276;InbreedingCoeff=0.0680;MQ=57.57;MQ0=2;MQRankSum=4.252;QD=17.57;ReadPosRankSum=1.792 GT:AD:DP:GQ:PL 0/1:16,11:27:99:265,0,402 1/1:0,26:27:66.17:811,66,0 0/1:10,9:19:99:274,0,258 0/1:19,13:32:99:395,0,564 0/1:11,15:26:99:473,0,302 0/1:11,17:28:99:491,0,253 1/1:0,12:12:33.10:411,33,0 0/1:6,10:16:99:279,0,155 0/0:18,0:18:45.12:0,45,526 0/0:14,0:14:39.11:0,39,445 0/1:7,13:20:99:398,0,155 1/1:0,13:13:36.11:455,36,0 1/1:2,20:22:12.39:606,12,0 0/1:6,7:13:99:224,0,166 0/0:79,0:79:99:0,190,2245 0/0:13,0:13:36.10:0,36,413 0/1:14,14:28:99:386,0,372 0/0:12,0:12:30.09:0,30,362 0/1:18,24:43:99:540,0,433 0/1:30,29:59:99:716,0,689 0/0:41,0:41:99:0,102,1143 0/0:26,0:26:69.19:0,69,809 0/0:38,0:38:93.27:0,93,1138 0/0:14,0:14:36.10:0,36,444 0/0:27,0:28:69.20:0,69,834 0/0:30,0:30:66.19:0,66,840 0/0:17,0:17:36.10:0,36,449 0/0:26,0:26:75.16:0,75,833 0/0:28,0:28:69.19:0,69,833 0/1:6,13:19:99:357,0,128 0/0:24,0:24:57.16:0,57,703 0/0:35,0:35:87.20:0,87,970 0/1:11,17:28:99:511,0,236 0/1:9,12:21:99:303,0,218 0/0:30,0:30:69.18:0,69,816 1/1:0,20:20:60.17:710,60,0 0/1:17,21:38:99:542,0,415 0/0:28,0:28:78.17:0,78,874 0/1:12,14:26:99:372,0,285 0/0:19,0:19:48.13:0,48,565 0/1:9,10:19:99:249,0,220 0/0:11,0:11:30.08:0,30,352 14 24505764 . T A 191.70 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.319;DP=663;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8867;InbreedingCoeff=-0.0128;MQ=57.43;MQ0=1;MQRankSum=-0.168;QD=13.69;ReadPosRankSum=0.080 GT:AD:DP:GQ:PL 0/0:18,0:18:51.16:0,51,632 0/0:19,0:19:51.15:0,51,611 0/0:11,0:11:33.09:0,33,380 0/0:26,0:26:75.23:0,75,930 0/0:18,0:18:48.15:0,48,613 0/0:18,0:18:54.15:0,54,662 0/0:9,0:9:21.07:0,21,274 0/0:14,0:14:39.12:0,39,491 0/0:7,0:7:21.06:0,21,252 0/0:10,0:10:27.08:0,27,323 0/0:9,0:9:24.07:0,24,288 0/0:8,0:8:24.07:0,24,281 0/0:18,0:18:48.14:0,48,584 0/0:11,0:11:30.09:0,30,369 0/0:44,0:44:99:0,123,1457 0/0:7,0:7:21.07:0,21,260 0/1:6,8:14:99:238,0,136 0/0:13,0:13:36.11:0,36,431 0/0:21,0:21:57.16:0,57,684 0/0:27,0:27:78.23:0,78,944 0/0:18,0:18:54.17:0,54,670 0/0:18,0:19:45.14:0,45,552 0/0:20,0:20:57.18:0,57,728 0/0:17,0:17:48.12:0,48,568 0/0:15,0:15:45.15:0,45,583 0/0:23,0:23:60.18:0,60,751 0/0:12,0:12:30.08:0,30,350 0/0:17,0:17:51.15:0,51,613 0/0:15,0:15:42.12:0,42,512 0/0:14,0:14:36.11:0,36,432 0/0:13,0:13:36.11:0,36,441 0/0:20,0:20:57.16:0,57,673 0/0:18,0:18:54.16:0,54,644 0/0:10,0:11:30.08:0,30,350 0/0:13,0:14:30.09:0,30,367 0/0:16,0:16:48.11:0,48,550 0/0:19,1:22:51.16:0,51,640 0/0:12,0:12:33.08:0,33,386 0/0:16,0:17:48.13:0,48,567 0/0:11,0:11:33.10:0,33,396 0/0:11,0:11:24.07:0,24,294 0/0:6,0:6:18.05:0,18,216 14 24505791 . G C 352.07 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.042;DP=520;Dels=0.00;FS=1.461;HRun=0;HaplotypeScore=0.8413;InbreedingCoeff=-0.0304;MQ=54.85;MQ0=10;MQRankSum=0.165;QD=9.26;ReadPosRankSum=-0.605 GT:AD:DP:GQ:PL 0/0:11,0:11:30.09:0,30,373 0/0:11,0:11:33.10:0,33,404 0/0:10,0:10:27.08:0,27,336 0/0:17,0:17:51.16:0,51,661 0/0:14,0:14:42.12:0,42,525 0/0:15,0:15:45.14:0,45,587 0/0:10,0:10:30.09:0,30,377 0/0:10,0:10:30.09:0,30,391 0/0:2,0:2:3.01:0,3,39 0/0:12,0:12:33.09:0,33,388 0/0:6,0:6:18.05:0,18,218 0/0:10,0:10:30.09:0,30,370 0/0:9,0:9:27.08:0,27,332 0/0:13,0:13:36.11:0,36,442 0/0:34,0:35:93.28:0,93,1155 0/0:9,0:10:24.07:0,24,294 0/0:14,0:14:36.11:0,36,450 0/0:15,0:15:45.13:0,45,557 0/0:20,0:20:51.15:0,51,622 0/0:14,0:14:39.11:0,39,468 0/1:6,7:13:99:153,0,158 0/0:10,0:10:30.08:0,30,345 0/0:16,0:16:48.15:0,48,631 0/0:9,0:9:27.08:0,27,342 0/0:10,0:10:30.09:0,30,382 0/0:20,0:20:57.16:0,57,745 0/0:15,0:15:39.11:0,39,458 0/0:16,0:16:48.15:0,48,595 0/0:12,0:12:33.10:0,33,407 0/0:13,0:13:36.10:0,36,449 0/0:6,0:6:18.06:0,18,224 0/1:15,10:25:99:261,0,395 0/0:14,0:14:42.13:0,42,518 0/0:8,0:8:21.05:0,21,239 0/0:13,0:13:33.09:0,33,396 0/0:13,0:13:36.10:0,36,446 0/0:12,0:12:33.10:0,33,400 0/0:6,0:6:18.05:0,18,214 0/0:7,0:7:18.04:0,18,202 0/0:11,0:11:33.08:0,33,396 0/0:9,0:9:24.07:0,24,288 0/0:4,0:4:12.04:0,12,144 14 24507003 . A C 3461.28 . AC=10;AF=0.119;AN=84;BaseQRankSum=-4.980;DP=1696;Dels=0.00;FS=1.088;HRun=0;HaplotypeScore=5.3318;InbreedingCoeff=-0.1351;MQ=57.89;MQ0=0;MQRankSum=1.274;QD=10.39;ReadPosRankSum=0.649 GT:AD:DP:GQ:PL 0/0:43,0:44:99:0,111,1321 0/0:38,0:38:99:0,108,1236 0/0:34,0:35:96.25:0,96,1101 0/1:21,27:48:99:668,0,571 0/1:11,12:23:99:317,0,269 0/0:32,1:34:65.56:0,66,1005 0/1:8,13:21:99:301,0,238 0/1:13,14:28:99:387,0,301 0/0:39,1:41:83.69:0,84,1216 0/0:26,0:26:72.20:0,72,844 0/0:31,0:31:87.21:0,87,998 0/1:24,14:38:99:301,0,700 0/1:25,6:32:47.61:48,0,767 0/1:22,19:41:99:446,0,564 0/0:113,0:116:99:0,316,3680 0/0:45,0:45:99:0,129,1482 0/1:19,15:34:99:371,0,516 0/0:27,0:27:69.17:0,69,799 0/0:65,0:65:99:0,165,1958 0/0:96,0:96:99:0,262,3093 0/0:54,0:56:99:0,141,1655 0/0:35,0:35:99:0,99,1091 0/0:39,0:39:99:0,111,1296 0/0:25,0:25:75.17:0,75,860 0/0:19,0:20:54.14:0,54,644 0/0:30,0:31:84.21:0,84,939 0/0:33,0:34:99:0,99,1165 0/0:39,0:39:99:0,102,1194 0/0:21,0:21:54.16:0,54,641 0/1:19,13:33:99:269,0,432 0/0:29,0:30:84.24:0,84,983 0/0:67,0:67:99:0,180,2114 0/1:20,15:35:99:354,0,605 0/0:38,0:39:99:0,111,1288 0/0:38,1:39:99:0,105,1245 0/0:55,0:55:99:0,156,1825 0/0:63,0:64:99:0,159,1881 0/0:30,0:30:81.20:0,81,927 0/0:36,0:36:99:0,99,1112 0/0:25,0:25:66.19:0,66,770 0/0:35,0:35:99:0,99,1182 0/0:45,0:45:99:0,123,1437 14 24507010 . C A 14633.56 . AC=20;AF=0.238;AN=84;BaseQRankSum=15.058;DP=1957;Dels=0.00;FS=5.949;HRun=0;HaplotypeScore=4.7829;InbreedingCoeff=0.0812;MQ=57.12;MQ0=2;MQRankSum=-4.659;QD=17.67;ReadPosRankSum=2.345 GT:AD:DP:GQ:PL 0/1:14,36:50:99:983,0,324 1/1:1,43:44:99:1472,123,0 0/1:24,14:38:99:375,0,664 0/0:57,0:57:99:0,156,1829 0/0:32,0:32:90.22:0,90,1049 0/1:16,23:39:99:583,0,409 0/1:16,9:25:99:227,0,422 0/1:16,14:30:99:429,0,424 0/0:46,0:46:99:0,120,1318 0/0:38,0:38:99:0,105,1170 0/1:16,20:36:99:515,0,444 1/1:0,38:38:99:1247,102,0 0/1:11,28:39:99:771,0,227 0/1:28,19:47:99:494,0,659 0/0:145,0:145:99:0,382,4330 0/0:47,0:47:99:0,132,1484 0/0:38,0:38:99:0,108,1213 0/0:30,0:30:84.22:0,84,947 0/1:36,40:76:99:1169,0,941 0/1:46,62:108:99:1604,0,1191 0/0:59,0:59:99:0,156,1787 0/0:43,0:43:99:0,120,1317 0/0:56,0:56:99:0,156,1858 0/0:25,0:25:75.22:0,75,884 0/0:27,0:27:69.17:0,69,810 0/0:35,0:35:96.28:0,96,1161 0/0:35,0:35:99:0,99,1160 0/0:43,0:43:99:0,126,1364 0/0:22,0:22:63.12:0,63,688 0/0:39,0:39:99:0,111,1227 0/0:37,0:37:99:0,105,1165 0/0:72,0:72:99:0,177,2052 0/0:45,0:45:99:0,132,1459 0/1:20,20:40:99:550,0,496 0/0:44,0:44:99:0,129,1405 1/1:0,62:62:99:2013,165,0 0/1:43,29:72:99:740,0,1150 0/0:30,0:30:84.21:0,84,935 0/1:16,28:44:99:799,0,377 0/0:35,0:35:99:0,99,1076 0/1:15,25:40:99:661,0,369 0/0:47,2:49:99:0,101,1480 14 24507116 . G A 955.52 . AC=3;AF=0.036;AN=84;BaseQRankSum=0.014;DP=721;Dels=0.00;FS=1.200;HRun=0;HaplotypeScore=1.5590;InbreedingCoeff=0.6425;MQ=58.08;MQ0=0;MQRankSum=1.475;QD=23.89;ReadPosRankSum=-0.408 GT:AD:DP:GQ:PL 0/0:15,0:15:45.13:0,45,539 0/0:16,0:16:48.15:0,48,598 0/0:17,0:17:48.13:0,48,554 0/0:15,0:15:42.13:0,42,539 0/0:9,0:9:24.08:0,24,328 0/0:15,0:15:42.13:0,42,541 0/0:8,0:8:24.08:0,24,320 0/0:10,0:10:27.09:0,27,359 0/0:18,0:19:51.13:0,51,615 0/0:15,0:15:45.12:0,45,526 0/0:20,0:20:57.15:0,57,665 0/0:8,0:8:24.04:0,24,272 0/0:21,0:21:57.16:0,57,694 0/0:15,0:15:39.11:0,39,463 0/0:52,0:53:99:0,144,1731 0/0:21,0:21:63.18:0,63,744 0/0:18,0:18:48.13:0,48,578 0/0:22,0:22:60.18:0,60,746 0/0:27,0:27:78.22:0,78,909 0/0:36,0:36:99:0,99,1213 0/0:32,0:33:87.25:0,87,1042 0/0:8,0:8:24.07:0,24,277 0/0:14,0:14:39.12:0,39,510 0/0:10,0:10:30.10:0,30,391 0/0:7,0:7:18.06:0,18,238 0/0:9,0:9:27.08:0,27,333 0/0:10,0:10:24.05:0,24,278 0/0:13,0:13:39.11:0,39,473 0/0:7,0:7:21.06:0,21,259 0/0:9,0:9:27.06:0,27,309 0/0:11,1:12:33.10:0,33,414 0/0:35,0:35:96.26:0,96,1155 0/0:20,0:20:51.16:0,51,628 0/1:9,10:19:99:291,0,241 0/0:12,0:12:36.11:0,36,444 1/1:0,21:21:60.19:746,60,0 0/0:27,0:28:78.19:0,78,920 0/0:12,0:12:36.08:0,36,435 0/0:15,0:15:42.13:0,42,514 0/0:14,0:14:39.11:0,39,462 0/0:16,0:16:48.11:0,48,549 0/0:17,0:17:48.13:0,48,571 14 24526206 . T C 5944.19 . AC=19;AF=0.226;AN=84;BaseQRankSum=-6.419;DP=1048;Dels=0.00;FS=0.906;HRun=2;HaplotypeScore=0.5992;InbreedingCoeff=0.1158;MQ=58.98;MQ0=0;MQRankSum=2.158;QD=17.64;ReadPosRankSum=-2.131 GT:AD:DP:GQ:PL 0/0:20,0:20:51.14:0,51,641 0/1:8,11:19:99:292,0,243 0/1:11,9:20:99:242,0,292 0/0:35,0:35:90.27:0,90,1116 0/0:18,0:18:51.14:0,51,622 1/1:0,22:22:57.17:696,57,0 0/1:11,4:15:66.94:67,0,349 0/1:10,10:20:99:283,0,255 0/1:13,12:25:99:325,0,373 0/0:23,0:24:63.20:0,63,791 0/1:8,9:17:99:196,0,249 0/1:4,15:19:94.57:407,0,95 0/1:7,5:12:99:136,0,131 0/0:18,0:18:51.15:0,51,623 0/0:61,0:61:99:0,150,1844 0/0:26,0:27:75.21:0,75,893 0/0:20,0:20:54.15:0,54,655 0/0:15,0:15:42.12:0,42,507 0/0:41,0:41:99:0,99,1229 0/0:50,0:50:99:0,126,1578 0/0:49,0:50:99:0,132,1641 0/0:32,0:32:84.25:0,84,1033 0/0:35,0:35:87.27:0,87,1109 0/0:19,0:19:48.15:0,48,625 0/1:10,17:27:99:452,0,244 0/0:19,0:19:54.16:0,54,673 0/0:19,0:20:54.15:0,54,659 0/0:21,0:21:60.19:0,60,752 0/1:7,5:12:99:153,0,217 0/1:10,10:20:99:247,0,253 0/0:12,0:12:36.11:0,36,443 0/0:45,0:46:99:0,114,1405 1/1:0,27:27:69.18:800,69,0 0/0:17,0:17:51.12:0,51,609 0/0:26,0:26:69.20:0,69,844 0/0:23,0:23:66.18:0,66,810 1/1:1,40:41:99:1225,108,0 0/1:19,13:32:99:319,0,462 0/1:5,4:9:99:103,0,159 0/0:29,0:29:72.22:0,72,909 0/0:15,0:15:36.11:0,36,445 0/0:18,0:18:51.15:0,51,625 14 24527220 . C T 6837.99 . AC=6;AF=0.071;AN=84;BaseQRankSum=-18.267;DP=3295;Dels=0.00;FS=2.230;HRun=0;HaplotypeScore=1.8405;InbreedingCoeff=-0.0769;MQ=59.05;MQ0=0;MQRankSum=2.509;QD=13.62;ReadPosRankSum=-0.985 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,114,1432 0/0:68,0:68:99:0,178,2240 0/0:61,1:62:99:0,144,2135 0/0:173,1:174:99:0,475,6243 0/0:143,0:143:99:0,376,4961 0/0:114,0:114:99:0,304,4070 0/1:41,48:89:99:1322,0,1227 0/0:106,0:106:99:0,280,3680 0/0:59,0:59:99:0,165,2017 0/0:43,0:43:99:0,120,1488 0/0:41,0:42:99:0,117,1446 0/0:53,0:53:99:0,135,1675 0/0:50,0:50:99:0,144,1751 0/0:58,0:58:99:0,165,2018 0/1:109,105:214:99:2745,0,3111 0/0:40,0:40:99:0,117,1450 0/1:22,28:50:99:757,0,587 0/0:35,0:35:93.27:0,93,1126 0/0:103,0:104:99:0,292,3513 0/0:122,0:122:99:0,328,4074 0/0:97,0:97:99:0,253,3107 0/0:81,0:81:99:0,232,2851 0/0:173,0:173:99:0,448,5974 0/0:87,0:87:99:0,241,3203 0/0:103,0:103:99:0,259,3470 0/0:90,0:90:99:0,238,3177 0/0:49,0:49:99:0,135,1656 0/0:57,0:57:99:0,153,1926 0/0:57,0:57:99:0,162,1995 0/1:26,21:47:99:559,0,759 0/1:23,25:48:99:717,0,595 0/0:118,0:118:99:0,304,3836 0/0:77,0:77:99:0,199,2510 0/0:52,0:52:99:0,144,1764 0/0:53,0:53:99:0,150,1866 0/0:64,0:64:99:0,187,2260 0/0:104,0:105:99:0,277,3368 0/0:45,0:45:99:0,120,1483 0/0:48,0:48:99:0,129,1610 0/0:45,1:46:99:0,126,1525 0/1:28,26:54:99:738,0,845 0/0:75,0:75:99:0,199,2456 14 24529890 . A G 49592.51 . AC=75;AF=0.893;AN=84;BaseQRankSum=12.187;DP=1655;Dels=0.00;FS=0.851;HRun=0;HaplotypeScore=1.2430;InbreedingCoeff=-0.1200;MQ=58.92;MQ0=0;MQRankSum=0.608;QD=29.97;ReadPosRankSum=-1.229 GT:AD:DP:GQ:PL 1/1:1,22:23:33.96:769,34,0 1/1:0,27:27:75.20:878,75,0 1/1:0,22:22:51.15:622,51,0 1/1:0,102:102:99:3773,295,0 1/1:0,101:101:99:3645,283,0 1/1:0,30:30:84.27:1109,84,0 1/1:0,40:40:99:1491,117,0 1/1:0,40:40:99:1542,120,0 1/1:0,34:34:90.26:1089,90,0 0/1:13,13:26:99:321,0,345 1/1:0,24:24:66.21:824,66,0 1/1:0,22:22:63.18:746,63,0 0/1:18,6:24:99:139,0,490 1/1:0,34:34:99:1193,99,0 1/1:0,87:89:99:2936,244,0 1/1:0,26:26:78.23:933,78,0 1/1:0,29:29:81.24:992,81,0 1/1:0,34:34:99:1206,102,0 1/1:0,38:39:99:1232,105,0 1/1:0,60:60:99:2077,169,0 0/1:25,32:58:99:886,0,640 1/1:0,38:38:99:1210,99,0 1/1:0,92:92:99:3292,256,0 0/1:28,33:61:99:1107,0,739 0/1:39,24:63:99:749,0,1129 1/1:0,55:55:99:2022,159,0 1/1:0,15:15:45.14:545,45,0 0/1:7,17:24:99:452,0,175 1/1:0,26:26:72.22:893,72,0 1/1:0,25:25:63.20:790,63,0 1/1:0,27:27:81.23:966,81,0 0/1:29,25:54:99:763,0,716 1/1:0,30:30:81.25:1007,81,0 1/1:0,38:38:99:1350,114,0 1/1:0,36:36:96.27:1166,96,0 1/1:0,27:27:72.21:873,72,0 1/1:0,33:33:90.22:1046,90,0 1/1:0,23:23:63.11:706,63,0 1/1:0,25:25:66.21:814,66,0 0/1:26,9:35:99:219,0,798 0/1:8,13:21:99:383,0,219 1/1:0,23:23:69.20:838,69,0 14 24533474 . G A 1119.81 . AC=4;AF=0.048;AN=84;BaseQRankSum=4.050;DP=775;Dels=0.00;FS=3.048;HRun=0;HaplotypeScore=0.3917;InbreedingCoeff=-0.0113;MQ=58.49;MQ0=0;MQRankSum=2.163;QD=16.47;ReadPosRankSum=-1.387 GT:AD:DP:GQ:PL 0/0:16,0:16:42.11:0,42,473 0/0:23,0:23:57.14:0,57,646 0/0:10,0:10:24.06:0,24,263 0/0:50,0:50:99:0,123,1519 0/0:43,0:43:99:0,105,1323 0/0:25,0:25:63.19:0,63,779 0/0:22,0:22:54.15:0,54,674 0/0:19,0:19:51.15:0,51,614 0/0:10,0:10:30.08:0,30,338 0/0:12,0:12:33.09:0,33,377 0/0:14,0:14:39.11:0,39,443 0/0:18,0:18:51.12:0,51,570 0/0:14,0:14:42.11:0,42,466 0/1:1,8:9:10.72:255,0,11 0/0:34,0:34:93.25:0,93,1072 0/0:18,0:18:48.13:0,48,556 0/0:9,0:9:27.07:0,27,302 0/1:8,4:12:99:105,0,206 0/0:17,0:17:42.12:0,42,489 0/0:25,0:25:60.17:0,60,724 0/0:21,0:21:57.17:0,57,666 0/0:21,0:21:48.13:0,48,571 0/0:41,0:41:99:0,105,1285 0/0:13,0:13:39.11:0,39,461 0/0:19,0:19:54.16:0,54,652 0/1:6,22:28:99:644,0,141 0/0:11,0:11:30.05:0,30,328 0/0:18,0:18:42.12:0,42,511 0/0:14,0:14:42.11:0,42,465 0/0:10,0:10:30.08:0,30,342 0/1:12,7:19:99:203,0,305 0/0:28,0:28:75.21:0,75,854 0/0:17,0:17:45.13:0,45,517 0/0:9,0:9:24.05:0,24,259 0/0:8,0:8:24.07:0,24,271 0/0:19,0:19:51.13:0,51,574 0/0:23,0:23:63.17:0,63,722 0/0:9,0:9:27.07:0,27,289 0/0:8,0:8:24.05:0,24,254 0/0:16,0:16:48.11:0,48,518 0/0:9,0:9:27.07:0,27,300 0/0:14,0:14:33.08:0,33,354 14 24533539 . C A 10291.66 . AC=36;AF=0.429;AN=84;BaseQRankSum=-16.013;DP=755;Dels=0.00;FS=35.259;HRun=0;HaplotypeScore=0.4281;InbreedingCoeff=0.0275;MQ=58.64;MQ0=0;MQRankSum=0.807;QD=20.22;ReadPosRankSum=0.157 GT:AD:DP:GQ:PL 0/0:19,0:19:51.17:0,51,669 0/0:12,0:12:36.11:0,36,439 0/1:6,7:13:99:187,0,163 1/1:0,32:32:90.27:1084,90,0 0/1:9,17:26:99:518,0,278 0/0:31,0:31:84.28:0,84,1157 0/0:9,0:9:27.08:0,27,348 0/0:21,0:21:57.18:0,57,757 0/1:8,5:13:99:143,0,225 1/1:0,13:13:36.11:431,36,0 0/1:6,10:16:99:267,0,185 0/0:19,0:19:48.14:0,48,605 0/1:4,7:11:99:216,0,122 0/1:7,4:11:99:105,0,207 0/1:25,16:41:99:400,0,734 1/1:0,12:12:33.10:402,33,0 0/1:6,4:10:99:114,0,199 0/1:4,7:11:99:190,0,110 0/1:11,11:22:99:284,0,294 0/1:8,14:22:99:327,0,227 1/1:0,25:25:63.19:779,63,0 0/1:7,4:11:99:106,0,207 1/1:0,29:29:81.25:988,81,0 1/1:0,14:14:39.12:474,39,0 0/1:15,9:24:99:224,0,550 1/1:0,22:22:60.18:736,60,0 0/1:5,4:9:93.80:94,0,165 0/1:10,10:20:99:243,0,322 0/1:8,12:20:99:349,0,253 0/0:9,0:9:24.07:0,24,285 0/1:8,5:13:99:106,0,243 1/1:0,29:29:75.23:928,75,0 0/0:20,0:20:54.18:0,54,705 0/0:22,0:22:60.16:0,60,753 0/1:7,3:10:80.63:81,0,236 0/0:17,0:17:51.16:0,51,653 0/0:20,1:21:54.17:0,54,692 0/0:18,0:18:48.15:0,48,609 0/1:6,7:13:99:206,0,162 0/0:15,0:15:45.12:0,45,541 0/0:13,0:13:39.12:0,39,498 0/1:7,10:17:99:310,0,199 14 24534916 . G T 7129.09 . AC=6;AF=0.071;AN=84;BaseQRankSum=-12.153;DP=4344;DS;Dels=0.00;FS=13.933;HRun=0;HaplotypeScore=2.6013;InbreedingCoeff=-0.0769;MQ=59.35;MQ0=0;MQRankSum=1.659;QD=12.19;ReadPosRankSum=0.328 GT:AD:DP:GQ:PL 0/1:35,36:71:99:1018,0,1062 0/1:43,36:79:99:1008,0,1236 0/0:61,0:61:99:0,153,1957 0/0:208,0:208:99:0,539,7241 0/0:217,0:217:99:0,569,7616 0/1:73,60:134:99:1594,0,2174 0/0:132,0:132:99:0,346,4667 0/1:74,53:127:99:1522,0,2227 0/0:68,0:68:99:0,175,2206 0/0:90,0:90:99:0,238,3026 0/0:64,0:64:99:0,178,2249 0/0:81,0:81:99:0,226,2799 0/0:61,0:61:99:0,156,1987 0/0:53,0:53:99:0,138,1756 0/0:249,1:250:99:0,605,7829 0/0:70,0:70:99:0,199,2468 0/0:77,0:77:99:0,214,2691 0/0:67,1:68:99:0,184,2300 0/0:149,1:150:99:0,339,4661 0/0:197,0:197:99:0,506,6481 0/0:158,2:161:99:0,391,4923 0/0:92,0:92:99:0,250,3142 0/0:229,0:229:99:0,590,7991 0/0:116,0:116:99:0,301,4053 0/1:78,39:117:99:1102,0,2086 0/0:124,0:124:99:0,325,4348 0/0:54,0:54:99:0,153,1913 0/0:65,0:65:99:0,178,2249 0/1:28,29:57:99:885,0,838 0/0:72,0:72:99:0,187,2358 0/0:84,0:84:99:0,217,2739 0/0:131,0:131:99:0,349,4463 0/0:89,0:89:99:0,250,3097 0/0:72,0:72:99:0,202,2570 0/0:64,0:64:99:0,184,2300 0/0:66,1:67:99:0,187,2347 0/0:153,0:153:99:0,406,5027 0/0:62,0:62:99:0,175,2191 0/0:75,2:77:99:0,160,2532 0/0:75,0:75:99:0,214,2693 0/0:51,0:51:99:0,132,1713 0/0:74,0:74:99:0,199,2492 14 24538040 . G A 220.45 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.121;DP=766;Dels=0.00;FS=2.856;HRun=0;HaplotypeScore=1.1999;InbreedingCoeff=-0.0256;MQ=58.17;MQ0=0;MQRankSum=0.639;QD=8.48;ReadPosRankSum=-0.398 GT:AD:DP:GQ:PL 0/0:13,0:13:27.08:0,27,331 0/1:9,5:14:99:104,0,245 0/1:5,7:12:99:179,0,128 0/0:47,0:47:99:0,114,1441 0/0:40,0:40:99:0,105,1339 0/0:33,0:33:78.22:0,78,949 0/0:21,0:21:60.19:0,60,767 0/0:32,0:32:87.26:0,87,1083 0/0:15,0:15:45.13:0,45,525 0/0:10,0:10:24.07:0,24,294 0/0:9,0:9:21.06:0,21,259 0/0:17,0:17:36.09:0,36,418 0/0:7,0:7:21.06:0,21,252 0/0:15,0:15:39.12:0,39,470 0/0:35,0:35:81.23:0,81,952 0/0:12,0:12:33.08:0,33,381 0/0:11,0:11:27.08:0,27,325 0/0:11,0:11:27.04:0,27,296 0/0:21,0:21:57.16:0,57,675 0/0:30,0:30:87.22:0,87,1019 0/0:11,0:11:27.03:0,27,270 0/0:18,0:19:45.13:0,45,549 0/0:32,0:32:87.19:0,87,1057 0/0:33,0:33:78.21:0,78,981 0/0:37,0:37:75.20:0,75,942 0/0:32,0:32:75.21:0,75,957 0/0:8,0:8:18.05:0,18,222 0/0:8,0:8:21.06:0,21,253 0/0:7,0:7:21.07:0,21,260 0/0:6,0:6:18.05:0,18,222 0/0:10,0:10:30.08:0,30,353 0/0:31,0:31:84.25:0,84,1035 0/0:14,0:14:36.11:0,36,443 0/0:12,0:12:30.09:0,30,355 0/0:16,0:17:39.10:0,39,450 0/0:11,0:11:27.08:0,27,333 0/0:16,0:16:36.11:0,36,439 0/0:13,0:13:33.10:0,33,398 0/0:12,0:12:33.10:0,33,404 0/0:9,0:9:27.06:0,27,318 0/0:16,0:16:39.09:0,39,463 0/0:7,0:7:18.06:0,18,223 14 24546515 . C T 506.09 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.827;DP=1739;Dels=0.00;FS=4.609;HRun=0;HaplotypeScore=1.6617;InbreedingCoeff=-0.0120;MQ=58.98;MQ0=1;MQRankSum=0.006;QD=14.46;ReadPosRankSum=0.646 GT:AD:DP:GQ:PL 0/0:25,0:26:57.13:0,57,603 0/0:29,0:29:81.16:0,81,839 0/0:27,0:27:72.17:0,72,763 0/0:69,0:71:99:0,183,1992 0/0:76,0:78:99:0,192,2199 0/0:48,0:50:99:0,126,1438 0/0:38,0:41:99:0,108,1218 0/0:47,0:48:99:0,126,1423 0/0:33,0:33:96.22:0,96,1023 0/0:26,0:26:69.15:0,69,725 0/1:9,21:35:99:552,0,149 0/0:25,0:25:66.12:0,66,685 0/0:30,0:30:75.15:0,75,791 0/0:36,0:37:96.19:0,96,1023 0/0:91,0:98:99:0,234,2464 0/0:39,0:40:96.24:0,96,1034 0/0:25,0:25:60.14:0,60,643 0/0:27,0:27:75.15:0,75,783 0/0:42,0:42:96.21:0,96,1042 0/0:65,0:69:99:0,162,1741 0/0:67,0:69:99:0,183,1956 0/0:44,0:45:99:0,117,1213 0/0:77,0:82:99:0,217,2421 0/0:41,0:42:99:0,108,1188 0/0:35,0:36:90.24:0,90,1030 0/0:42,1:44:82.59:0,83,1189 0/0:27,0:27:75.15:0,75,780 0/0:29,0:32:69.16:0,69,736 0/0:25,0:26:66.15:0,66,718 0/0:30,0:31:84.18:0,84,898 0/0:23,0:23:57.10:0,57,581 0/0:60,0:61:99:0,147,1578 0/0:46,0:47:99:0,132,1406 0/0:30,0:32:84.17:0,84,880 0/0:22,0:22:60.13:0,60,651 0/0:31,0:31:81.19:0,81,861 0/0:58,0:58:99:0,159,1713 0/0:41,0:42:99:0,111,1182 0/0:38,0:40:93.22:0,93,997 0/0:29,0:29:81.16:0,81,853 0/0:24,0:25:63.12:0,63,653 0/0:36,0:38:99:0,102,1109 14 24546566 . T C 2003.79 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.103;DP=2301;Dels=0.00;FS=0.906;HRun=0;HaplotypeScore=1.6153;InbreedingCoeff=-0.0244;MQ=58.81;MQ0=0;MQRankSum=0.272;QD=11.45;ReadPosRankSum=0.852 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,120,1464 0/0:35,0:35:99:0,99,1206 0/0:29,0:29:81.24:0,81,967 0/1:49,38:87:99:1112,0,1464 0/1:54,34:88:99:955,0,1631 0/0:84,0:84:99:0,238,2944 0/0:71,0:71:99:0,199,2474 0/0:63,0:63:99:0,184,2249 0/0:30,0:30:81.25:0,81,985 0/0:39,0:39:99:0,102,1246 0/0:31,0:32:84.26:0,84,1035 0/0:38,0:38:99:0,111,1340 0/0:28,0:28:78.24:0,78,953 0/0:48,0:48:99:0,135,1573 0/0:152,0:152:99:0,418,5001 0/0:38,0:38:99:0,111,1328 0/0:35,0:35:96.29:0,96,1185 0/0:20,0:20:57.18:0,57,693 0/0:85,0:85:99:0,238,2876 0/0:99,0:99:99:0,277,3392 0/0:68,0:68:99:0,202,2410 0/0:51,0:51:99:0,150,1823 0/0:107,0:107:99:0,313,3792 0/0:56,0:56:99:0,166,2028 0/0:72,0:72:99:0,202,2470 0/0:66,0:66:99:0,175,2167 0/0:39,0:39:99:0,111,1326 0/0:35,0:35:99:0,102,1242 0/0:44,0:44:99:0,111,1363 0/0:31,0:31:81.23:0,81,976 0/0:39,0:39:99:0,111,1351 0/0:84,0:84:99:0,241,2914 0/0:49,0:49:99:0,132,1613 0/0:40,0:40:99:0,120,1421 0/0:37,0:37:99:0,108,1325 0/0:40,0:40:99:0,114,1393 0/0:84,0:84:99:0,241,2912 0/0:45,0:45:99:0,135,1621 0/0:49,0:49:99:0,144,1715 0/0:34,0:34:90.26:0,90,1099 0/0:33,0:33:96.26:0,96,1143 0/0:50,0:50:99:0,144,1730 14 24546868 . G C 39.58 . AC=4;AF=0.048;AN=84;BaseQRankSum=-11.718;DP=3364;DS;Dels=0.00;FS=5.881;HRun=2;HaplotypeScore=6.1730;InbreedingCoeff=-0.0668;MQ=58.58;MQ0=0;MQRankSum=-0.086;QD=0.14;ReadPosRankSum=-11.246 GT:AD:DP:GQ:PL 0/0:39,12:51:81.06:0,81,802 0/0:52,14:67:99:0,99,1049 0/0:34,9:43:48.45:0,48,742 0/0:128,36:164:99:0,236,2880 0/0:139,28:167:99:0,180,2906 0/0:99,9:108:99:0,187,2359 0/0:92,12:104:99:0,159,1727 0/0:96,10:106:99:0,198,2229 0/0:40,5:45:81.17:0,81,892 0/0:41,6:47:35.96:0,36,822 0/0:53,8:61:99:0,106,1378 0/0:38,16:54:3.23:0,3,764 0/0:44,3:47:69.45:0,69,971 0/0:51,11:63:91.54:0,92,1220 0/0:133,44:178:11.89:0,12,2343 0/0:81,17:99:87.54:0,88,1686 0/0:55,6:61:91.51:0,92,1226 0/0:45,12:57:49.40:0,49,1068 0/1:54,22:76:50.10:50,0,1035 0/0:155,7:162:99:0,305,3373 0/0:67,23:92:5.10:0,5,1249 0/0:68,4:74:99:0,144,1553 0/0:135,31:167:99:0,225,2683 0/0:87,2:89:99:0,183,1974 0/0:83,8:91:99:0,125,2011 0/0:68,8:76:99:0,130,1693 0/0:46,10:56:67.55:0,68,982 0/0:56,5:61:99:0,120,1255 0/0:39,15:56:1.88:3,0,711 0/1:29,9:39:24.24:24,0,600 0/0:62,14:76:72.91:0,73,1257 0/0:100,12:112:99:0,219,2383 0/0:74,6:80:99:0,127,1536 0/0:40,8:48:81.10:0,81,844 0/0:58,7:67:99:0,102,1087 0/0:47,9:56:49.41:0,49,716 0/1:80,22:103:22.02:22,0,1905 0/0:40,4:44:78.16:0,78,859 0/1:46,12:59:28.27:28,0,710 0/0:48,9:57:75.14:0,75,803 0/0:40,4:44:75.12:0,75,793 0/0:47,9:57:34.18:0,34,1031 14 24567498 . A C 44662.82 . AC=84;AF=1.000;AN=84;DP=1288;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.6426;InbreedingCoeff=-0.0000;MQ=59.09;MQ0=0;QD=34.68 GT:AD:DP:GQ:PL 1/1:0,26:26:72.22:890,72,0 1/1:0,16:16:45.14:566,45,0 1/1:0,20:20:54.17:672,54,0 1/1:0,62:62:99:2274,178,0 1/1:0,60:60:99:2260,172,0 1/1:0,46:46:99:1693,132,0 1/1:0,27:27:75.23:976,75,0 1/1:0,40:40:99:1557,120,0 1/1:0,18:18:51.16:644,51,0 1/1:0,19:19:57.16:676,57,0 1/1:0,14:14:39.12:482,39,0 1/1:0,26:26:63.19:793,63,0 1/1:0,20:20:51.16:660,51,0 1/1:0,22:22:57.14:695,57,0 1/1:0,75:75:99:2532,205,0 1/1:0,27:27:75.23:933,75,0 1/1:0,19:19:54.17:683,54,0 1/1:0,18:18:54.17:676,54,0 1/1:1,33:34:93.28:1141,93,0 1/1:0,41:41:99:1311,105,0 1/1:0,48:48:99:1367,108,0 1/1:0,25:25:75.23:927,75,0 1/1:0,64:64:99:2394,181,0 1/1:0,34:34:93.27:1202,93,0 1/1:0,41:41:99:1565,120,0 1/1:0,29:29:81.25:1070,81,0 1/1:0,22:22:60.18:741,60,0 1/1:0,22:22:54.17:688,54,0 1/1:0,16:16:45.13:555,45,0 1/1:0,36:36:96.31:1237,96,0 1/1:0,19:19:45.14:572,45,0 1/1:0,38:39:99:1260,99,0 1/1:0,28:28:72.19:890,72,0 1/1:0,17:17:51.16:656,51,0 1/1:0,18:18:51.16:646,51,0 1/1:0,36:36:96.25:1140,96,0 1/1:0,36:36:90.28:1154,90,0 1/1:0,29:29:78.24:982,78,0 1/1:0,35:35:99:1288,105,0 1/1:0,21:21:63.20:796,63,0 1/1:0,17:17:42.13:535,42,0 1/1:0,26:26:72.21:884,72,0 14 24584880 . GCCTGCGTC G 1102.83 . 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C G 1908.76 . 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C T 1681.05 . 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G A 1486.93 . 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C T 4768.84 . 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G GGAA 110829.97 . 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C T 466.80 . 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G C 3633.41 . 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G A 400.22 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.685;DP=3209;Dels=0.00;FS=2.185;HRun=0;HaplotypeScore=2.4499;InbreedingCoeff=-0.0120;MQ=59.37;MQ0=0;MQRankSum=-0.065;QD=16.68;ReadPosRankSum=0.110 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,129,1631 0/0:61,0:61:99:0,172,2169 0/0:55,0:55:99:0,144,1856 0/0:140,0:140:99:0,388,5179 0/0:135,0:135:99:0,349,4759 0/0:108,0:108:99:0,286,3888 0/0:89,0:89:99:0,238,3219 0/0:101,0:101:99:0,265,3584 0/0:52,0:52:99:0,144,1834 0/0:54,0:54:99:0,135,1736 0/0:56,0:56:99:0,150,1912 0/0:58,0:58:99:0,160,2026 0/0:54,0:54:99:0,135,1709 0/0:53,0:53:99:0,144,1847 0/0:200,0:200:99:0,512,6596 0/0:51,0:51:99:0,141,1813 0/0:62,0:62:99:0,169,2123 0/0:53,0:53:99:0,147,1853 0/0:89,0:89:99:0,232,2960 0/0:110,0:110:99:0,289,3710 0/0:105,0:105:99:0,256,3335 0/0:87,0:87:99:0,238,3036 0/0:164,0:164:99:0,415,5684 0/0:96,0:96:99:0,244,3261 0/0:97,0:97:99:0,256,3474 0/0:86,0:86:99:0,220,2967 0/0:50,0:50:99:0,138,1743 0/1:9,15:24:99:446,0,269 0/0:44,0:44:99:0,117,1490 0/0:71,1:72:99:0,158,2270 0/0:35,0:35:96.30:0,96,1210 0/0:123,0:123:99:0,304,3941 0/0:87,0:87:99:0,238,3014 0/0:42,0:42:99:0,126,1586 0/0:59,0:59:99:0,153,1958 0/0:53,0:53:99:0,150,1921 0/0:88,0:88:99:0,223,2896 0/0:53,0:53:99:0,144,1846 0/0:60,0:60:99:0,166,2094 0/0:57,0:57:99:0,150,1932 0/0:49,0:49:99:0,141,1765 0/0:49,0:49:99:0,129,1638 14 24709351 . C T 6443.06 . 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T C 1073.93 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.244;DP=1658;Dels=0.00;FS=13.811;HRun=2;HaplotypeScore=0.8584;InbreedingCoeff=-0.0244;MQ=59.08;MQ0=0;MQRankSum=0.525;QD=16.78;ReadPosRankSum=-1.013 GT:AD:DP:GQ:PL 0/0:31,0:31:78.24:0,78,969 0/0:36,0:36:99:0,105,1257 0/0:22,0:22:63.18:0,63,769 0/0:80,0:80:99:0,235,2917 0/0:80,0:80:99:0,241,3066 0/0:65,0:65:99:0,193,2452 0/0:59,0:59:99:0,175,2235 0/0:48,0:48:99:0,144,1775 0/0:34,0:34:96.25:0,96,1145 0/0:27,1:28:81.23:0,81,984 0/0:33,0:33:93.29:0,93,1173 0/0:30,0:30:87.27:0,87,1064 0/0:24,0:24:72.22:0,72,884 0/0:22,0:22:60.18:0,60,734 0/0:85,0:85:99:0,229,2813 0/0:45,0:45:99:0,126,1538 0/0:28,0:28:81.25:0,81,993 0/0:22,0:22:60.18:0,60,730 0/0:43,0:43:99:0,123,1530 0/0:48,0:48:99:0,141,1728 0/0:41,1:42:99:0,114,1400 0/0:29,0:29:84.25:0,84,1016 0/0:77,0:77:99:0,229,2883 0/0:51,0:51:99:0,150,1919 0/0:50,0:50:99:0,147,1873 0/0:46,0:46:99:0,132,1630 0/0:20,0:20:54.17:0,54,672 0/0:30,0:30:87.27:0,87,1068 0/1:8,11:19:99:358,0,247 0/0:29,0:29:78.25:0,78,983 0/0:33,0:33:96.29:0,96,1175 0/0:37,0:37:99:0,105,1267 0/1:19,26:45:99:779,0,549 0/0:29,0:29:78.24:0,78,958 0/0:40,0:40:99:0,111,1375 0/0:28,0:28:84.26:0,84,1023 0/0:36,0:36:96.29:0,96,1175 0/0:30,0:30:84.26:0,84,1033 0/0:33,0:34:96.28:0,96,1163 0/0:28,0:28:84.26:0,84,1047 0/0:27,0:27:75.22:0,75,908 0/0:35,0:35:99:0,99,1204 14 24724663 . C T 341.35 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.875;DP=1652;Dels=0.00;FS=12.183;HRun=0;HaplotypeScore=0.9121;InbreedingCoeff=-0.0120;MQ=59.15;MQ0=0;MQRankSum=0.021;QD=7.42;ReadPosRankSum=-1.376 GT:AD:DP:GQ:PL 0/0:25,0:25:72.22:0,72,876 0/0:35,0:35:99:0,99,1215 0/0:25,0:25:75.23:0,75,919 0/0:82,0:82:99:0,247,3164 0/0:78,0:78:99:0,232,3076 0/0:65,0:65:99:0,193,2537 0/0:60,0:60:99:0,178,2379 0/0:51,0:51:99:0,153,1996 0/0:32,0:32:96.27:0,96,1155 0/0:31,0:31:93.28:0,93,1120 0/0:33,0:33:93.29:0,93,1161 0/0:28,0:28:81.25:0,81,1006 0/0:27,0:27:81.23:0,81,988 0/0:23,0:23:69.21:0,69,843 0/0:85,0:85:99:0,244,3008 0/0:39,0:39:99:0,108,1333 0/0:23,0:23:69.21:0,69,839 0/0:25,0:25:72.20:0,72,858 0/0:43,0:43:99:0,126,1531 0/0:50,0:50:99:0,150,1785 0/0:47,0:48:99:0,132,1602 0/0:31,0:31:87.26:0,87,1049 0/0:78,1:79:99:0,202,3048 0/0:50,0:50:99:0,150,1981 0/0:50,0:50:99:0,147,1951 0/1:31,15:46:99:388,0,1041 0/0:17,0:17:48.15:0,48,584 0/0:32,0:32:93.28:0,93,1120 0/0:19,0:19:57.18:0,57,697 0/0:26,1:27:42.98:0,43,882 0/0:31,0:31:90.26:0,90,1095 0/0:35,0:35:99:0,99,1188 0/0:44,0:44:99:0,129,1572 0/0:29,0:29:84.25:0,84,1028 0/0:39,0:39:99:0,114,1374 0/0:27,0:27:75.20:0,75,892 0/0:34,0:34:96.28:0,96,1152 0/0:28,0:28:75.23:0,75,928 0/0:32,0:32:93.28:0,93,1140 0/0:34,0:34:99:0,102,1233 0/0:23,0:23:66.19:0,66,782 0/0:37,0:37:99:0,105,1300 14 24729687 . C T 1923.04 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.864;DP=2520;Dels=0.00;FS=2.315;HRun=1;HaplotypeScore=1.3702;InbreedingCoeff=-0.0244;MQ=59.22;MQ0=0;MQRankSum=1.609;QD=17.02;ReadPosRankSum=1.212 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,135,1685 0/0:51,0:51:99:0,147,1838 0/0:47,0:47:99:0,138,1706 0/0:91,0:91:99:0,262,3438 0/0:75,0:75:99:0,217,2834 0/0:62,0:63:99:0,181,2377 0/0:52,0:53:99:0,144,1880 0/0:68,0:68:99:0,193,2523 0/0:48,0:48:99:0,132,1678 0/0:45,1:46:99:0,132,1643 0/0:50,0:50:99:0,138,1737 0/0:47,0:47:99:0,138,1708 0/0:41,0:41:99:0,117,1432 0/0:61,0:61:99:0,175,2156 0/0:182,1:183:99:0,485,6258 0/0:56,0:56:99:0,162,1981 0/0:64,0:64:99:0,187,2298 0/0:42,0:42:99:0,123,1550 0/0:87,0:87:99:0,250,3050 0/1:33,37:71:99:1077,0,962 0/0:63,0:63:99:0,168,2061 0/0:47,0:47:99:0,135,1688 0/0:101,0:101:99:0,283,3750 0/0:49,0:49:99:0,144,1903 0/0:61,0:61:99:0,175,2317 0/0:58,0:58:99:0,166,2201 0/0:41,0:41:99:0,120,1462 0/0:60,0:60:99:0,175,2181 0/0:54,0:54:99:0,150,1887 0/0:48,0:49:99:0,138,1703 0/0:42,0:42:99:0,126,1565 0/0:77,0:78:99:0,214,2653 0/0:42,0:42:99:0,111,1402 0/0:51,0:51:99:0,147,1830 0/0:46,0:46:99:0,132,1687 0/0:56,0:56:99:0,166,2099 0/0:71,0:71:99:0,199,2480 0/0:52,0:52:99:0,147,1817 0/0:54,0:55:99:0,159,1967 0/0:61,0:61:99:0,168,2095 0/1:13,29:42:99:908,0,370 0/0:50,0:50:99:0,144,1768 14 24736027 . G A 32161.93 . AC=41;AF=0.488;AN=84;BaseQRankSum=-19.088;DP=2287;Dels=0.00;FS=11.470;HRun=0;HaplotypeScore=2.1689;InbreedingCoeff=0.0947;MQ=59.14;MQ0=0;MQRankSum=-0.865;QD=19.50;ReadPosRankSum=1.524 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,105,1319 0/0:62,0:62:99:0,166,2061 0/0:36,0:36:93.29:0,93,1192 1/1:0,92:92:99:2678,226,0 0/1:49,39:88:99:924,0,1356 1/1:2,73:75:99:2189,183,0 1/1:1,56:58:99:1692,138,0 1/1:0,57:57:99:1708,141,0 0/1:22,16:38:99:357,0,636 0/0:37,0:37:90.26:0,90,1113 0/1:16,17:33:99:425,0,462 1/1:0,35:35:96.28:1136,96,0 0/1:24,17:41:99:456,0,714 0/1:22,19:42:99:488,0,630 0/1:80,67:147:99:1630,0,2199 0/1:23,19:42:99:500,0,728 0/0:36,0:36:99:0,105,1295 0/1:15,20:35:99:542,0,427 0/0:70,0:71:99:0,177,2134 0/1:49,45:94:99:1286,0,1306 0/1:38,31:71:99:802,0,930 1/1:0,43:44:99:1335,111,0 1/1:0,92:93:99:2900,247,0 0/0:61,1:62:99:0,160,2132 0/0:66,0:66:99:0,166,2188 0/0:75,0:75:99:0,193,2500 0/1:18,14:32:99:387,0,532 0/0:33,0:33:87.26:0,87,1082 1/1:0,32:32:87.25:1031,87,0 0/0:32,0:32:90.26:0,90,1117 0/1:20,24:44:99:661,0,530 0/0:85,0:85:99:0,217,2685 0/1:28,34:62:99:904,0,665 0/1:8,16:24:99:451,0,163 0/1:18,19:37:99:520,0,524 0/1:27,18:47:99:527,0,830 1/1:0,60:60:99:1932,162,0 1/1:1,54:55:99:1676,135,0 0/1:21,19:40:99:463,0,514 0/1:21,25:46:99:678,0,540 1/1:0,43:43:99:1419,120,0 0/1:23,19:42:99:465,0,688 14 24773387 . T C 12357.50 . AC=17;AF=0.202;AN=84;BaseQRankSum=4.469;DP=2074;Dels=0.00;FS=5.304;HRun=0;HaplotypeScore=1.1267;InbreedingCoeff=0.3363;MQ=59.19;MQ0=0;MQRankSum=1.197;QD=20.16;ReadPosRankSum=-0.187 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,111,1363 0/0:31,0:31:87.26:0,87,1060 0/0:41,0:41:99:0,117,1421 0/1:37,39:76:99:1140,0,1115 0/0:66,0:66:99:0,184,2257 0/0:64,0:64:99:0,190,2394 0/0:55,0:55:99:0,153,1909 0/0:58,0:58:99:0,172,2091 0/0:33,0:33:96.28:0,96,1140 0/0:37,0:37:99:0,102,1224 0/0:42,0:42:99:0,123,1482 0/0:32,0:32:96.27:0,96,1133 0/0:22,0:23:63.20:0,63,770 0/0:41,0:41:99:0,114,1368 0/0:148,0:148:99:0,394,4806 0/1:18,16:34:99:457,0,497 0/0:46,0:46:99:0,138,1662 0/1:21,21:42:99:629,0,604 0/0:76,0:76:99:0,208,2498 0/0:68,0:68:99:0,199,2440 0/1:36,22:58:99:565,0,1091 1/1:0,38:38:99:1275,108,0 1/1:0,91:91:99:3373,259,0 0/0:55,0:55:99:0,147,1802 0/0:55,0:55:99:0,159,1966 0/0:64,0:64:99:0,190,2311 0/0:24,0:24:72.22:0,72,873 0/0:33,0:33:96.28:0,96,1149 0/0:36,1:37:99:0,99,1210 0/0:50,0:50:99:0,141,1712 0/1:22,16:38:99:411,0,674 0/0:57,0:58:99:0,159,1952 0/0:51,0:52:99:0,141,1699 1/1:0,47:47:99:1605,138,0 1/1:1,34:35:68.32:1165,68,0 0/1:25,11:37:99:289,0,675 0/1:26,22:48:99:543,0,751 0/1:20,21:41:99:558,0,604 0/0:50,0:51:99:0,144,1747 0/0:36,0:36:99:0,99,1228 0/0:42,0:42:99:0,117,1421 0/1:16,12:28:99:349,0,503 14 24803698 . A C 342.54 . AC=22;AF=0.379;AN=58;BaseQRankSum=-3.163;DP=149;Dels=0.00;FS=103.093;HRun=3;HaplotypeScore=0.3541;InbreedingCoeff=-0.1730;MQ=57.75;MQ0=0;MQRankSum=1.425;QD=4.45;ReadPosRankSum=-3.828 GT:AD:DP:GQ:PL 0/1:2,2:4:20.61:21,0,53 0/0:2,1:4:6.02:0,6,70 0/1:3,2:5:21.57:22,0,59 ./. 0/0:2,2:4:3.01:0,3,37 ./. 0/1:1,3:4:29.55:53,0,30 0/0:3,1:4:6.02:0,6,70 1/1:0,1:1:3.01:31,3,0 ./. ./. ./. 0/0:1,1:2:3.01:0,3,30 ./. 0/0:3,4:7:6.01:0,6,62 0/0:2,2:4:6.01:0,6,67 1/1:1,2:3:3.01:32,3,0 0/1:4,1:5:22.54:23,0,48 ./. 0/1:4,2:7:21.66:22,0,24 ./. 1/1:1,1:2:3.01:38,3,0 ./. ./. 0/0:3,3:6:3.01:0,3,33 ./. 0/1:4,3:7:20.46:20,0,95 1/1:1,3:4:3.01:33,3,0 0/0:3,1:4:6.02:0,6,69 0/1:3,3:6:58.09:58,0,59 0/1:2,2:4:17.66:18,0,54 0/1:6,3:9:8.66:9,0,121 0/0:1,1:2:3.01:0,3,33 0/0:5,1:6:9.02:0,9,99 0/0:5,1:6:15.01:0,15,160 ./. 1/1:0,1:1:2.98:22,3,0 0/1:3,3:6:27.42:29,0,27 ./. 0/1:2,3:5:21.61:22,0,37 0/1:3,1:4:16.67:17,0,60 0/0:1,1:2:3.01:0,3,38 14 24803710 . G A 43.88 . AC=1;AF=0.013;AN=80;BaseQRankSum=-1.567;DP=182;Dels=0.00;FS=2.581;HRun=0;HaplotypeScore=0.0896;InbreedingCoeff=-0.0755;MQ=57.62;MQ0=0;MQRankSum=-1.055;QD=10.97;ReadPosRankSum=0.335 GT:AD:DP:GQ:PL 0/0:4,0:4:12.04:0,12,154 0/0:6,0:6:15.05:0,15,192 0/0:3,0:3:9.02:0,9,103 0/0:7,0:7:18.05:0,18,216 0/0:6,0:6:18.04:0,18,206 0/0:3,0:3:6.02:0,6,81 0/0:6,0:6:18.06:0,18,231 0/0:5,0:5:12.04:0,12,163 0/0:2,0:2:6.02:0,6,78 0/0:2,0:2:3.01:0,3,36 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.01:0,6,66 0/0:4,0:4:9.03:0,9,110 0/1:1,3:4:24.94:89,0,25 0/0:10,0:10:27.07:0,27,312 0/0:7,0:7:15.05:0,15,194 0/0:3,0:3:9.02:0,9,98 0/0:4,0:4:3.01:0,3,36 0/0:4,0:4:9:0,9,94 0/0:9,0:9:18.04:0,18,206 0/0:4,0:4:9.02:0,9,102 0/0:2,0:2:5.99:0,6,59 0/0:8,0:8:18.06:0,18,241 ./. 0/0:8,0:8:21.06:0,21,262 ./. 0/0:4,0:4:12.03:0,12,141 0/0:4,0:4:9.03:0,9,113 0/0:4,0:4:9.03:0,9,116 0/0:8,0:8:24.06:0,24,285 0/0:2,0:2:6.02:0,6,76 0/0:11,0:11:27.08:0,27,332 0/0:3,0:3:6.01:0,6,64 0/0:2,0:2:6.02:0,6,76 0/0:3,0:3:9.03:0,9,108 0/0:2,0:2:3.01:0,3,39 0/0:2,0:2:6.02:0,6,70 0/0:8,0:8:24.07:0,24,287 0/0:2,0:2:3:0,3,29 0/0:6,0:6:18.05:0,18,213 0/0:4,0:4:9:0,9,100 0/0:3,0:3:9.03:0,9,115 14 24805463 . G T 8445.16 . AC=9;AF=0.107;AN=84;BaseQRankSum=-19.340;DP=3232;Dels=0.00;FS=1.256;HRun=1;HaplotypeScore=2.9681;InbreedingCoeff=0.1289;MQ=59.35;MQ0=0;MQRankSum=0.773;QD=13.43;ReadPosRankSum=2.004 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,144,1780 0/0:58,0:58:99:0,169,2099 0/0:45,0:45:99:0,132,1650 0/0:183,0:183:99:0,512,6791 0/0:166,0:166:99:0,470,6278 0/0:122,0:122:99:0,346,4647 0/0:115,0:115:99:0,316,4196 0/0:101,1:102:99:0,251,3623 0/0:58,0:58:99:0,172,2134 0/0:52,1:53:99:0,150,1856 0/0:54,0:54:99:0,163,2044 0/0:59,0:59:99:0,172,2147 0/0:52,0:52:99:0,144,1780 0/0:60,0:60:99:0,169,2111 0/0:200,0:200:99:0,557,6977 0/0:61,0:61:99:0,178,2245 0/0:57,1:58:99:0,156,1976 0/0:65,0:65:99:0,187,2301 0/0:80,0:80:99:0,214,2685 0/1:54,44:98:99:1124,0,1659 0/1:50,36:86:99:989,0,1301 0/0:62,0:62:99:0,162,2013 0/1:80,77:157:99:1996,0,2632 0/0:83,0:83:99:0,232,3109 0/0:89,0:89:99:0,238,3197 0/0:89,0:89:99:0,244,3234 0/0:56,0:56:99:0,162,2032 0/0:50,0:50:99:0,150,1846 0/0:59,0:59:99:0,169,2144 0/1:29,23:52:99:572,0,917 0/0:55,0:55:99:0,156,1956 0/1:35,36:71:99:1062,0,982 0/1:35,35:70:99:946,0,976 0/0:60,0:60:99:0,166,2080 0/0:63,0:63:99:0,165,2084 0/0:58,0:58:99:0,156,1963 0/0:70,0:70:99:0,199,2478 0/0:51,0:51:99:0,141,1773 0/0:60,0:60:99:0,169,2123 0/1:33,25:59:99:681,0,972 1/1:1,34:36:61.47:1076,61,0 0/0:52,0:52:99:0,153,1925 14 24806902 . G A 3227.04 . AC=9;AF=0.107;AN=84;BaseQRankSum=2.834;DP=1106;Dels=0.00;FS=8.605;HRun=0;HaplotypeScore=0.6099;InbreedingCoeff=-0.1200;MQ=58.87;MQ0=0;MQRankSum=-0.694;QD=13.17;ReadPosRankSum=-0.513 GT:AD:DP:GQ:PL 0/0:20,0:20:57.12:0,57,623 0/0:20,0:20:54.13:0,54,592 0/0:26,0:27:78.21:0,78,865 0/1:27,21:48:99:550,0,772 0/1:17,16:33:99:487,0,484 0/0:29,0:29:84.25:0,84,1029 0/0:22,0:22:66.20:0,66,831 0/0:21,0:21:57.15:0,57,708 0/0:16,0:16:45.11:0,45,485 0/0:18,0:18:48.12:0,48,536 0/0:16,0:16:48.13:0,48,547 0/1:11,7:18:99:201,0,258 0/1:7,8:15:99:224,0,157 0/0:24,0:24:69.19:0,69,777 0/0:64,0:64:99:0,165,1859 0/0:31,0:31:90.24:0,90,1032 0/0:25,0:25:75.15:0,75,820 0/0:19,0:19:57.16:0,57,664 0/0:51,0:51:99:0,141,1564 0/0:40,0:40:99:0,111,1285 0/0:29,0:29:78.19:0,78,886 0/0:33,0:33:90.21:0,90,1003 0/0:32,0:32:93.28:0,93,1163 0/0:26,0:26:66.21:0,66,834 0/0:35,0:35:99:0,102,1269 0/0:24,0:24:72.20:0,72,846 0/0:15,0:15:45.10:0,45,498 0/0:24,0:24:60.11:0,60,664 0/0:16,0:16:48.14:0,48,564 0/0:18,1:19:26.47:0,26,555 0/0:29,0:29:81.24:0,81,962 0/0:33,0:33:96.26:0,96,1086 0/0:29,0:29:81.23:0,81,921 0/1:12,10:22:99:254,0,355 0/1:10,14:25:99:396,0,221 0/0:20,0:20:57.15:0,57,637 0/1:15,20:35:99:601,0,389 0/0:19,0:19:54.15:0,54,613 0/1:15,12:27:99:314,0,435 0/0:17,0:17:42.12:0,42,490 0/0:18,0:18:51.14:0,51,582 0/1:10,12:22:99:330,0,283 14 24910076 . A T 1564.79 . AC=3;AF=0.036;AN=84;BaseQRankSum=-6.732;DP=2457;Dels=0.00;FS=0.552;HRun=0;HaplotypeScore=1.1286;InbreedingCoeff=0.6543;MQ=59.31;MQ0=0;MQRankSum=0.222;QD=21.15;ReadPosRankSum=-1.612 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,123,1522 0/0:39,0:39:99:0,111,1397 0/0:31,0:31:93.28:0,93,1149 0/0:121,0:122:99:0,340,4311 0/0:102,0:102:99:0,301,3800 0/0:69,1:70:99:0,193,2535 0/0:68,0:68:99:0,184,2384 0/0:59,0:59:99:0,172,2198 0/0:37,0:37:99:0,108,1313 0/0:31,0:31:87.27:0,87,1083 0/0:42,0:42:99:0,123,1505 0/0:37,0:37:99:0,111,1385 0/0:33,0:34:96.30:0,96,1201 0/0:45,0:45:99:0,132,1632 0/0:153,0:153:99:0,412,5124 0/0:52,0:52:99:0,150,1862 0/0:52,0:52:99:0,150,1877 0/0:42,0:42:99:0,123,1544 0/0:113,0:113:99:0,319,3957 0/0:107,0:108:99:0,292,3675 0/0:64,0:64:99:0,184,2298 0/0:47,0:48:99:0,126,1613 0/0:102,0:102:99:0,304,3879 0/0:50,0:50:99:0,144,1823 0/0:73,2:75:99:0,169,2645 0/0:55,0:55:99:0,156,2001 0/1:24,16:40:99:444,0,776 0/0:51,0:51:99:0,141,1751 1/1:0,34:34:99:1202,99,0 0/0:41,0:41:99:0,120,1452 0/0:40,0:40:99:0,117,1445 0/0:76,0:76:99:0,211,2616 0/0:76,0:76:99:0,217,2650 0/0:50,0:50:99:0,147,1816 0/0:38,0:38:99:0,114,1419 0/0:37,0:37:99:0,105,1308 0/0:89,0:89:99:0,253,3165 0/0:38,0:38:99:0,111,1375 0/0:46,0:46:99:0,135,1695 0/0:46,0:46:99:0,132,1666 0/0:36,0:36:99:0,105,1308 0/0:45,0:45:99:0,129,1625 14 24911449 . C G 47.90 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.061;DP=491;Dels=0.00;FS=6.576;HRun=1;HaplotypeScore=0.4053;InbreedingCoeff=-0.0168;MQ=58.78;MQ0=0;MQRankSum=-0.213;QD=3.19;ReadPosRankSum=-0.188 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,161 0/0:8,0:8:24.06:0,24,258 0/0:10,0:11:30.08:0,30,323 0/0:26,0:26:78.21:0,78,899 0/0:23,0:23:63.18:0,63,738 0/0:11,0:11:33.09:0,33,391 0/0:15,0:15:39.11:0,39,450 0/0:10,0:10:30.08:0,30,356 0/0:14,0:14:36.09:0,36,402 0/0:5,0:5:15.04:0,15,169 0/0:11,0:11:33.08:0,33,358 0/0:10,0:10:27.03:0,27,278 0/0:8,0:8:21.05:0,21,227 0/0:10,0:10:27.07:0,27,295 0/0:26,0:26:75.19:0,75,842 0/0:14,0:14:39.10:0,39,439 0/0:15,0:15:39.07:0,39,414 0/0:4,0:4:12.03:0,12,135 0/0:10,0:10:27.04:0,27,270 0/0:23,0:23:63.16:0,63,697 0/0:15,0:15:42.09:0,42,477 0/0:10,0:10:30.08:0,30,322 0/0:20,0:20:60.16:0,60,723 0/0:10,0:10:30.07:0,30,339 0/0:11,0:11:30.08:0,30,351 0/0:9,0:9:27.07:0,27,302 0/0:6,0:6:15.04:0,15,163 0/0:6,0:6:18.05:0,18,197 0/0:8,0:8:21.04:0,21,226 0/0:12,0:12:36.09:0,36,395 0/0:11,0:11:33.08:0,33,366 0/0:8,0:8:21.05:0,21,231 0/0:3,0:3:9.02:0,9,97 0/0:14,0:14:36.09:0,36,405 0/0:11,0:11:33.08:0,33,367 0/0:4,0:4:11.97:0,12,102 0/0:18,0:18:45.13:0,45,523 0/0:9,0:9:27.06:0,27,292 0/1:9,6:15:94.07:94,0,265 0/0:12,0:12:33.08:0,33,360 0/0:7,0:7:21.06:0,21,235 0/0:13,0:13:30.07:0,30,319 14 24911452 . T C 302.61 . AC=3;AF=0.036;AN=84;BaseQRankSum=-3.857;DP=476;Dels=0.00;FS=3.029;HRun=0;HaplotypeScore=0.3120;InbreedingCoeff=-0.0423;MQ=58.89;MQ0=0;MQRankSum=1.023;QD=8.18;ReadPosRankSum=-2.610 GT:AD:DP:GQ:PL 0/0:4,1:5:12.04:0,12,150 0/0:6,0:6:18.05:0,18,213 0/0:11,0:11:33.10:0,33,388 0/0:26,0:26:75.23:0,75,908 0/0:21,0:22:57.17:0,57,687 0/0:11,0:11:30.08:0,30,365 0/1:5,7:12:99:145,0,153 0/0:10,0:10:30.09:0,30,362 0/0:13,0:13:39.12:0,39,470 0/0:5,0:5:15.04:0,15,177 0/0:10,0:10:27.08:0,27,325 0/0:9,0:9:27.08:0,27,321 0/0:8,0:9:21.07:0,21,261 0/0:10,0:10:30.08:0,30,345 0/0:27,0:28:78.22:0,78,912 0/0:11,0:11:27.07:0,27,309 0/0:16,0:16:42.13:0,42,497 0/0:4,0:4:12.04:0,12,144 0/0:10,0:10:27.08:0,27,332 0/0:24,0:25:66.17:0,66,766 0/0:13,0:13:36.11:0,36,430 0/0:9,0:9:27.08:0,27,320 0/0:20,0:20:60.18:0,60,710 0/0:9,0:9:27.07:0,27,327 0/0:12,0:12:27.07:0,27,318 0/0:9,0:9:27.05:0,27,317 0/0:6,0:6:18.05:0,18,212 0/0:7,0:7:21.05:0,21,242 0/0:8,0:8:21.07:0,21,255 0/0:14,0:14:42.12:0,42,497 0/0:11,0:11:33.10:0,33,396 0/0:7,0:8:21.06:0,21,252 0/0:3,0:3:9.03:0,9,112 0/0:13,0:13:33.09:0,33,397 0/0:10,0:10:30.09:0,30,360 0/0:5,0:5:15.04:0,15,167 0/1:10,8:18:99:154,0,247 0/1:4,3:7:79.12:79,0,120 0/0:14,0:14:39.12:0,39,470 0/0:12,0:12:36.11:0,36,435 0/0:5,0:5:15.05:0,15,181 0/0:10,0:10:27.08:0,27,321 14 30047548 . T C 783.91 . AC=1;AF=0.012;AN=84;BaseQRankSum=7.382;DP=1773;Dels=0.00;FS=2.797;HRun=0;HaplotypeScore=0.2861;InbreedingCoeff=-0.0120;MQ=59.49;MQ0=0;MQRankSum=0.311;QD=15.37;ReadPosRankSum=0.120 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,102,1278 0/0:32,0:32:78.24:0,78,991 0/0:45,0:45:99:0,111,1438 0/0:75,0:75:99:0,184,2384 0/0:72,0:72:99:0,190,2470 0/0:55,0:55:99:0,150,1953 0/1:24,27:51:99:830,0,684 0/0:50,0:50:99:0,138,1786 0/0:31,0:31:81.25:0,81,1005 0/0:40,0:40:96.30:0,96,1216 0/0:38,0:38:96.29:0,96,1186 0/0:40,0:40:99:0,108,1338 0/0:35,0:35:99:0,99,1215 0/0:28,0:28:78.24:0,78,965 0/0:108,0:108:99:0,289,3589 0/0:23,0:23:63.20:0,63,787 0/0:40,0:40:99:0,114,1372 0/0:32,0:32:84.26:0,84,1045 0/0:36,0:36:93.30:0,93,1185 0/0:47,0:47:99:0,114,1493 0/0:32,0:32:75.23:0,75,935 0/0:16,0:16:42.13:0,42,540 0/0:76,0:76:99:0,190,2499 0/0:53,0:53:99:0,135,1760 0/0:65,0:65:99:0,160,2108 0/0:54,0:54:99:0,141,1825 0/0:24,0:24:54.17:0,54,693 0/0:43,0:43:99:0,108,1361 0/0:27,0:27:69.22:0,69,878 0/0:33,0:33:81.25:0,81,1033 0/0:34,0:34:96.28:0,96,1157 0/0:51,0:51:99:0,129,1637 0/0:31,0:31:78.22:0,78,973 0/0:40,0:40:99:0,105,1316 0/0:38,0:38:93.28:0,93,1184 0/0:35,0:35:90.29:0,90,1152 0/0:44,1:45:99:0,105,1337 0/0:38,0:38:99:0,102,1272 0/0:35,0:35:90.28:0,90,1135 0/0:25,0:25:57.18:0,57,754 0/0:22,0:22:60.19:0,60,752 0/0:39,0:39:99:0,105,1326 14 30100228 . C A 752.61 . 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T C 76571.66 . AC=36;AF=0.429;AN=84;BaseQRankSum=18.099;DP=5805;DS;Dels=0.00;FS=6.528;HRun=0;HaplotypeScore=2.5469;InbreedingCoeff=0.2222;MQ=59.58;MQ0=0;MQRankSum=-0.937;QD=21.95;ReadPosRankSum=-1.018 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3689,295,0 0/1:61,51:112:99:1434,0,1648 0/0:114,0:114:99:0,307,3764 0/0:218,0:218:99:0,581,7268 0/0:225,0:225:99:0,629,7855 0/0:240,1:241:99:0,602,8162 0/1:111,127:238:99:3923,0,3201 0/0:213,0:213:99:0,593,7414 0/0:117,0:117:99:0,331,3992 0/0:110,1:111:99:0,284,3825 0/1:47,42:89:99:1269,0,1350 1/1:0,109:109:99:3902,313,0 0/1:60,46:106:99:1365,0,1589 0/1:56,43:100:99:1271,0,1615 0/1:115,128:244:99:3639,0,3227 0/1:49,48:97:99:1438,0,1374 0/0:97,0:97:99:0,280,3424 0/1:50,50:100:99:1573,0,1366 1/1:0,139:139:99:4832,385,0 1/1:0,137:137:99:4792,382,0 0/1:75,73:148:99:2005,0,2082 0/1:51,56:107:99:1703,0,1284 0/1:128,118:246:99:3646,0,3701 0/1:109,108:217:99:3347,0,3178 0/0:230,0:230:99:0,629,7987 1/1:1,209:210:99:7710,545,0 0/0:92,0:92:99:0,262,3113 0/0:119,0:119:99:0,325,3934 0/0:97,0:97:99:0,274,3341 1/1:0,108:108:99:3594,292,0 1/1:0,88:88:99:3036,241,0 0/0:136,0:136:99:0,379,4643 1/1:0,92:92:99:3149,253,0 0/1:56,57:113:99:1715,0,1577 0/0:93,0:93:99:0,253,3061 0/1:63,64:127:99:1923,0,1660 1/1:0,124:124:99:4364,355,0 1/1:0,107:107:99:3646,292,0 0/1:46,61:107:99:1843,0,1298 0/0:109,0:109:99:0,304,3730 0/0:103,1:104:99:0,240,3321 0/1:64,60:124:99:1761,0,1890 14 31578762 . C T 12996.15 . 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T C 105169.45 . 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T C 48275.50 . 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A C 43.34 . AC=2;AF=0.024;AN=84;BaseQRankSum=-29.308;DP=4612;DS;Dels=0.00;FS=363.593;HRun=2;HaplotypeScore=2.3825;InbreedingCoeff=-0.0338;MQ=59.29;MQ0=0;MQRankSum=1.066;QD=0.18;ReadPosRankSum=-13.687 GT:AD:DP:GQ:PL 0/0:78,16:94:99:0,229,2609 0/0:83,8:91:99:0,223,2587 0/0:64,14:78:99:0,189,2170 0/0:189,32:221:99:0,467,5721 0/0:118,25:143:99:0,324,3709 0/0:111,21:132:99:0,289,3418 0/0:119,14:133:99:0,296,3652 0/0:115,18:133:99:0,304,3459 0/0:77,9:86:99:0,167,2422 0/0:76,17:93:99:0,185,2431 0/0:64,16:80:99:0,177,2064 0/0:82,13:95:99:0,189,2466 0/0:62,12:74:99:0,126,1999 0/0:86,16:103:99:0,156,2528 0/0:184,66:250:99:0,194,5195 0/0:61,6:67:99:0,177,2057 0/0:75,15:91:99:0,160,2362 0/0:71,14:85:99:0,168,2236 0/1:83,31:114:72.85:73,0,2268 0/0:131,10:141:99:0,338,3976 0/1:90,33:123:32.21:32,0,2595 0/0:64,11:75:99:0,174,2039 0/0:167,19:186:99:0,401,5239 0/0:119,11:130:99:0,300,3711 0/0:138,18:156:99:0,358,4097 0/0:114,23:137:99:0,245,3283 0/0:57,7:64:99:0,128,1692 0/0:76,15:91:99:0,177,2492 0/0:66,12:78:99:0,115,2070 0/0:90,12:103:99:0,180,2625 0/0:58,17:75:99:0,104,1890 0/0:124,8:132:99:0,288,3662 0/0:83,11:94:99:0,200,2592 0/0:72,8:80:99:0,181,2310 0/0:85,9:94:99:0,235,2827 0/0:98,15:113:99:0,222,3158 0/0:77,27:105:1.29:5,0,2208 0/0:76,9:85:99:0,219,2472 0/0:92,10:102:99:0,206,2825 0/0:99,14:113:99:0,228,3183 0/0:67,7:74:99:0,196,2253 0/0:83,15:98:99:0,182,2638 14 31647241 . G A 52926.21 . 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T C 7510.45 . AC=9;AF=0.107;AN=84;BaseQRankSum=21.038;DP=2893;Dels=0.00;FS=1.765;HRun=0;HaplotypeScore=6.7623;InbreedingCoeff=0.1289;MQ=59.51;MQ0=0;MQRankSum=1.721;QD=15.78;ReadPosRankSum=-1.424 GT:AD:DP:GQ:PL 0/0:62,0:62:99:0,178,2089 0/0:68,1:69:99:0,152,2169 0/0:61,0:61:99:0,168,2003 0/0:105,0:105:99:0,283,3374 0/0:89,0:90:99:0,256,3065 0/0:98,0:98:99:0,256,3175 0/0:70,0:70:99:0,199,2374 0/0:92,0:92:99:0,247,2974 0/0:68,0:68:99:0,193,2250 0/0:57,0:57:99:0,156,1851 0/0:63,0:63:99:0,178,2116 0/1:34,29:63:99:841,0,936 0/0:46,1:47:99:0,126,1507 0/1:27,20:47:99:649,0,718 0/0:192,0:192:99:0,527,6199 0/0:54,0:54:99:0,147,1729 0/0:62,0:62:99:0,171,1998 0/1:36,27:63:99:823,0,984 0/0:86,1:88:99:0,226,2713 0/0:84,0:85:99:0,226,2724 0/0:68,1:69:99:0,153,2215 0/0:38,0:38:99:0,105,1231 0/0:106,0:106:99:0,292,3487 0/0:90,0:90:99:0,241,2883 0/0:77,0:77:99:0,214,2561 0/0:76,0:77:99:0,199,2395 0/0:34,0:34:87.27:0,87,1073 0/0:52,0:52:99:0,150,1776 0/0:66,0:66:99:0,187,2193 0/0:52,0:52:99:0,141,1691 0/0:62,0:62:99:0,168,2028 0/1:54,34:88:99:971,0,1264 0/0:37,0:37:99:0,102,1212 0/1:18,25:44:99:763,0,460 0/0:50,0:50:99:0,141,1657 0/1:28,30:58:99:857,0,752 0/0:75,0:76:99:0,202,2406 0/0:51,0:51:99:0,147,1724 0/0:59,0:59:99:0,169,2009 0/1:31,27:58:99:830,0,871 1/1:2,53:55:82.72:1776,83,0 0/0:57,0:58:99:0,162,1941 14 31647448 . G A 10264.28 . AC=12;AF=0.143;AN=84;BaseQRankSum=-23.219;DP=2623;Dels=0.00;FS=22.063;HRun=0;HaplotypeScore=5.8408;InbreedingCoeff=0.2222;MQ=59.50;MQ0=0;MQRankSum=-0.042;QD=18.17;ReadPosRankSum=-1.008 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,156,1956 0/0:61,0:61:99:0,169,2163 0/0:51,0:51:99:0,147,1872 0/0:94,0:94:99:0,262,3498 0/0:81,0:81:99:0,229,3117 0/0:90,0:90:99:0,250,3352 0/0:67,0:67:99:0,190,2549 0/0:84,0:84:99:0,229,3035 0/1:31,29:60:99:767,0,997 1/1:0,50:50:99:1702,144,0 0/0:58,0:58:99:0,169,2118 0/0:53,0:53:99:0,147,1882 0/0:44,0:44:99:0,120,1533 0/1:18,22:40:99:639,0,571 0/0:182,0:182:99:0,500,6417 0/0:46,0:46:99:0,126,1582 0/0:59,0:59:99:0,163,2056 0/0:57,0:57:99:0,147,1887 0/0:80,0:82:99:0,193,2479 0/0:80,0:80:99:0,199,2585 0/0:56,0:58:99:0,163,2069 0/0:36,0:36:99:0,99,1264 0/0:100,0:100:99:0,283,3826 1/1:0,79:79:99:2670,217,0 0/1:36,37:73:99:1055,0,1110 0/1:34,31:65:99:870,0,1125 0/0:25,0:25:66.21:0,66,857 0/0:54,0:54:99:0,153,1930 0/0:53,0:53:99:0,156,1945 0/0:44,0:44:99:0,126,1597 0/0:49,0:49:99:0,135,1740 0/0:79,0:80:99:0,202,2629 0/1:20,18:38:99:479,0,591 0/0:45,0:45:99:0,126,1603 0/1:19,21:40:99:603,0,543 0/0:51,0:51:99:0,141,1797 0/1:44,24:68:99:601,0,1403 0/1:22,30:52:99:877,0,649 0/0:59,1:60:99:0,138,2121 0/0:49,1:50:99:0,111,1751 0/0:50,0:50:99:0,129,1649 0/0:58,0:58:99:0,162,2043 14 31785054 . T C 81.33 . AC=4;AF=0.048;AN=84;BaseQRankSum=-12.865;DP=1191;Dels=0.00;FS=92.570;HRun=2;HaplotypeScore=0.5992;InbreedingCoeff=-0.0766;MQ=59.33;MQ0=0;MQRankSum=-0.655;QD=0.54;ReadPosRankSum=-7.142 GT:AD:DP:GQ:PL 0/0:25,7:32:52.49:0,52,794 0/0:16,6:22:42.09:0,42,480 0/0:9,5:14:5.36:0,5,238 0/0:22,8:30:1.72:3,0,553 0/0:23,5:28:25.37:0,25,500 0/0:35,3:38:90.18:0,90,991 0/0:27,9:36:37.41:0,37,606 0/0:19,5:24:15.43:0,15,443 0/0:10,3:13:1.54:0,2,318 0/0:15,7:22:42.09:0,42,468 0/0:19,3:22:32.40:0,32,529 0/0:20,1:21:9.41:0,9,353 0/0:14,7:21:10.57:0,11,423 0/0:22,6:28:63.16:0,63,711 0/0:61,22:84:76.88:0,77,1736 0/0:7,3:10:1.38:0,1,233 0/0:17,4:21:50.17:0,50,550 0/0:22,4:26:29.54:0,30,598 0/1:26,9:35:51.56:52,0,639 0/0:39,3:42:93.21:0,93,1070 0/1:44,14:58:13.39:13,0,1139 0/0:21,5:26:48.11:0,48,552 0/0:28,15:43:49.45:0,49,768 0/0:24,5:29:54.11:0,54,626 0/0:30,11:41:30.90:0,31,805 0/0:11,3:14:30.08:0,30,339 0/0:13,2:15:27.05:0,27,295 0/0:17,4:21:25.49:0,25,538 0/0:17,7:24:19.41:0,19,422 0/0:21,5:26:45.12:0,45,528 0/0:24,9:33:14.84:0,15,651 0/0:44,5:49:99:0,99,1179 0/0:31,5:36:69.18:0,69,782 0/1:12,9:21:83.78:84,0,315 0/0:11,4:15:30.07:0,30,335 0/0:17,3:20:22.43:0,22,509 0/1:28,10:38:13.66:14,0,681 0/0:20,7:27:57.16:0,57,657 0/0:16,5:21:14.44:0,14,426 0/0:24,3:27:18.85:0,19,534 0/0:10,7:17:27.06:0,27,295 0/0:19,2:21:19.42:0,19,445 14 31790832 . G C 830.62 . AC=30;AF=0.357;AN=84;BaseQRankSum=-11.388;DP=908;Dels=0.00;FS=853.329;HRun=1;HaplotypeScore=1.0557;InbreedingCoeff=-0.5433;MQ=59.04;MQ0=0;MQRankSum=1.237;QD=1.18;ReadPosRankSum=-13.759 GT:AD:DP:GQ:PL 0/0:15,6:21:20.49:0,20,557 0/1:12,10:22:29.51:30,0,369 0/0:10,5:15:26.57:0,27,309 0/1:18,10:28:13.63:14,0,661 0/0:12,4:16:5.52:0,6,413 0/1:9,9:19:39.52:40,0,277 0/1:11,5:16:29.27:29,0,378 0/1:10,5:15:2.15:2,0,370 0/1:9,13:22:82.96:83,0,268 0/0:4,2:6:12.04:0,12,147 0/1:7,10:17:34.33:34,0,197 0/1:7,9:16:41.93:42,0,176 0/1:16,7:23:13.48:13,0,425 0/0:11,4:15:33.10:0,33,403 0/1:34,23:57:43.11:43,0,875 0/1:9,7:16:6.88:7,0,315 0/0:14,13:27:3.39:0,3,420 0/1:8,6:14:9.36:9,0,246 0/1:12,18:31:99:183,0,382 0/1:30,17:47:10.70:11,0,980 0/1:24,22:46:22.55:23,0,699 0/1:16,11:28:33.82:34,0,459 0/1:16,13:29:14.10:14,0,548 0/1:11,6:17:5.67:6,0,291 0/0:8,5:13:24.08:0,24,312 0/1:13,6:19:35.84:36,0,398 0/1:7,6:13:41.68:42,0,207 0/0:11,13:24:3.40:0,3,348 0/0:5,10:15:14.41:0,14,150 0/0:13,6:19:5.54:0,6,341 0/1:2,5:7:22.53:23,0,58 0/1:29,12:41:23.28:23,0,818 0/1:11,12:23:41.75:42,0,375 0/1:5,9:14:53.17:53,0,136 0/1:9,6:15:31.89:32,0,291 0/0:14,10:24:8.99:0,9,476 0/1:16,10:26:9.57:10,0,448 0/1:13,10:23:53.02:53,0,427 0/1:14,9:23:49.03:49,0,450 0/1:12,5:17:2.75:0,1,406 0/1:12,8:20:19.14:19,0,318 0/0:7,2:9:18.53:0,19,228 14 31790886 . T G 1411.60 . AC=5;AF=0.060;AN=84;BaseQRankSum=7.082;DP=790;Dels=0.00;FS=0.738;HRun=0;HaplotypeScore=0.2491;InbreedingCoeff=-0.0634;MQ=59.18;MQ0=0;MQRankSum=0.609;QD=13.32;ReadPosRankSum=1.008 GT:AD:DP:GQ:PL 0/1:12,10:22:99:317,0,319 0/1:9,5:14:99:146,0,290 0/0:16,0:16:42.12:0,42,508 0/0:23,0:23:66.20:0,66,810 0/0:13,0:13:30.10:0,30,397 0/0:18,0:18:48.15:0,48,613 0/0:13,0:13:39.10:0,39,466 0/0:10,0:10:30.09:0,30,370 0/0:21,0:21:60.18:0,60,716 0/0:21,0:21:57.18:0,57,707 0/0:13,0:13:36.08:0,36,429 0/0:15,0:15:39.12:0,39,485 0/0:17,0:17:48.14:0,48,581 0/0:17,0:17:45.13:0,45,558 0/0:46,0:46:99:0,126,1504 0/0:12,0:12:36.11:0,36,431 0/0:14,0:14:42.13:0,42,518 0/0:15,0:15:42.13:0,42,525 0/0:31,0:31:90.27:0,90,1084 0/0:34,0:34:93.29:0,93,1160 0/1:14,16:30:99:451,0,406 0/1:9,11:20:99:298,0,279 0/0:26,0:26:69.21:0,69,865 0/0:11,0:11:30.09:0,30,379 0/0:10,0:10:27.08:0,27,336 0/0:10,0:10:30.09:0,30,368 0/0:11,0:11:30.09:0,30,355 0/1:10,10:20:99:297,0,277 0/0:12,0:12:36.11:0,36,426 0/0:15,0:15:42.12:0,42,504 0/0:11,0:11:33.10:0,33,411 0/0:34,0:34:93.29:0,93,1159 0/0:17,0:17:48.15:0,48,587 0/0:14,0:14:42.13:0,42,511 0/0:24,0:24:66.20:0,66,811 0/0:19,0:19:51.16:0,51,635 0/0:30,0:30:78.24:0,78,978 0/0:17,0:17:45.14:0,45,563 0/0:22,0:22:63.19:0,63,773 0/0:17,0:17:48.14:0,48,581 0/0:19,0:19:57.17:0,57,680 0/0:16,0:16:48.15:0,48,586 14 31856395 . CAAG C 6440.25 . AC=2;AF=0.024;AN=84;BaseQRankSum=19.245;DP=5183;DS;FS=10.901;HRun=0;HaplotypeScore=429.1414;InbreedingCoeff=-0.0244;MQ=59.39;MQ0=1;MQRankSum=-2.809;QD=19.52;ReadPosRankSum=4.371 GT:AD:DP:GQ:PL 0/0:86,0:86:99:0,247,5462 0/0:100,0:100:99:0,283,6059 0/0:79,0:79:99:0,220,4822 0/0:196,0:196:99:0,545,11951 0/0:180,0:179:99:0,503,11019 0/1:85,96:178:99:4179,0,3940 0/1:92,57:146:99:2261,0,4962 0/0:160,0:157:99:0,446,9864 0/0:103,0:103:99:0,292,6399 0/0:77,0:77:99:0,199,4398 0/0:72,0:72:99:0,196,4300 0/0:88,0:88:99:0,259,5702 0/0:64,0:64:99:0,175,3879 0/0:97,0:97:99:0,283,6213 0/0:250,0:250:99:0,710,15576 0/0:55,0:55:99:0,154,3411 0/0:93,0:93:99:0,271,5894 0/0:84,0:84:99:0,247,5302 0/0:185,0:185:99:0,521,11386 0/0:186,0:186:99:0,539,11903 0/0:192,0:191:99:0,535,11755 0/0:110,0:110:99:0,298,6519 0/0:197,0:197:99:0,554,12197 0/0:147,0:144:99:0,409,8918 0/0:176,0:172:99:0,500,10909 0/0:146,0:140:99:0,406,8965 0/0:70,0:70:99:0,193,4281 0/0:103,0:103:99:0,289,6369 0/0:105,0:105:99:0,301,6654 0/0:86,0:86:99:0,241,5234 0/0:77,0:77:99:0,211,4541 0/0:224,0:223:99:0,644,14188 0/0:143,0:143:99:0,409,8849 0/0:97,0:97:99:0,280,6157 0/0:81,0:80:99:0,229,5088 0/0:102,0:102:99:0,283,6186 0/0:165,0:165:99:0,464,10155 0/0:114,0:114:99:0,328,7169 0/0:86,0:86:99:0,238,5222 0/0:80,0:80:99:0,235,5163 0/0:94,0:94:99:0,268,5908 0/0:103,0:103:99:0,286,6278 14 35036971 . A G 588.18 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.264;DP=1353;Dels=0.00;FS=7.754;HRun=0;HaplotypeScore=0.2680;InbreedingCoeff=-0.0244;MQ=59.60;MQ0=0;MQRankSum=0.189;QD=10.14;ReadPosRankSum=-0.351 GT:AD:DP:GQ:PL 0/0:31,0:31:90.28:0,90,1085 0/0:22,0:22:63.19:0,63,758 0/0:29,0:29:87.26:0,87,1021 0/0:69,0:69:99:0,193,2334 0/0:45,0:45:99:0,123,1516 0/0:49,0:49:99:0,147,1820 0/0:34,0:34:99:0,102,1224 0/0:51,0:51:99:0,135,1676 0/0:39,0:39:99:0,114,1326 0/0:24,0:24:72.22:0,72,848 0/0:23,0:23:63.19:0,63,753 0/0:16,0:16:45.14:0,45,539 0/0:23,0:23:63.19:0,63,766 0/0:24,0:24:69.20:0,69,810 0/0:74,0:74:99:0,193,2346 0/0:13,0:13:33.10:0,33,402 0/0:22,0:22:63.19:0,63,743 0/0:23,0:23:63.19:0,63,763 0/0:27,0:27:78.24:0,78,947 0/0:27,0:27:72.22:0,72,883 0/1:20,10:30:99:285,0,555 0/1:16,12:28:99:366,0,485 0/0:69,0:69:99:0,193,2341 0/0:71,0:71:99:0,205,2492 0/0:63,0:63:99:0,175,2158 0/0:50,0:50:99:0,141,1744 0/0:20,0:20:57.17:0,57,681 0/0:20,0:20:60.18:0,60,705 0/0:29,0:29:78.24:0,78,945 0/0:28,0:28:75.23:0,75,920 0/0:21,0:21:63.19:0,63,746 0/0:18,0:18:54.16:0,54,644 0/0:16,0:16:42.13:0,42,517 0/0:30,0:30:87.27:0,87,1052 0/0:19,0:19:57.17:0,57,677 0/0:28,0:28:78.24:0,78,944 0/0:31,0:31:84.26:0,84,1022 0/0:26,0:26:72.22:0,72,863 0/0:23,0:23:66.20:0,66,786 0/0:25,0:25:75.23:0,75,892 0/0:22,0:22:60.18:0,60,733 0/0:21,0:21:60.18:0,60,721 14 35062312 . C T 47747.57 . 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T G 8.86 . AC=2;AF=0.071;AN=28;BaseQRankSum=-0.863;DP=20;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0563;InbreedingCoeff=-0.0238;MQ=58.11;MQ0=0;MQRankSum=0.731;QD=2.95;ReadPosRankSum=-1.395 GT:AD:DP:GQ:PL ./. 0/0:1,0:1:3.01:0,3,32 ./. ./. ./. ./. 0/0:1,0:1:2.99:0,3,24 0/0:1,0:1:3.01:0,3,36 ./. 0/0:1,0:1:3.01:0,3,34 ./. ./. 0/0:3,0:3:3.01:0,3,36 ./. 0/1:1,1:2:22.63:23,0,30 0/0:1,0:1:3.01:0,3,33 ./. 0/0:1,0:1:3:0,3,25 ./. 0/0:2,0:2:6.02:0,6,74 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3:0,3,29 ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0:3,0:3:6.02:0,6,82 ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,38 ./. ./. ./. ./. 0/1:0,1:1:1.76:36,3,0 14 35222732 . C T 3542.99 . 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T C 2530.43 . AC=1;AF=0.012;AN=84;BaseQRankSum=7.022;DP=6622;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.7915;InbreedingCoeff=-0.0120;MQ=59.64;MQ0=0;MQRankSum=0.003;QD=15.62;ReadPosRankSum=0.835 GT:AD:DP:GQ:PL 0/0:154,0:154:99:0,415,5147 0/0:162,0:162:99:0,439,5467 0/0:148,0:148:99:0,397,4961 0/0:172,0:172:99:0,475,5999 0/0:173,0:173:99:0,491,6261 0/0:180,0:180:99:0,500,6519 0/0:196,0:196:99:0,527,6793 0/0:194,0:195:99:0,527,6694 0/0:193,0:193:99:0,530,6561 0/0:142,0:142:99:0,391,4831 0/0:144,0:144:99:0,388,4826 0/0:150,1:151:99:0,406,5034 0/0:126,0:126:99:0,343,4257 0/0:120,0:120:99:0,337,4164 0/0:250,0:250:99:0,695,8586 0/0:120,0:120:99:0,331,4047 0/0:150,0:150:99:0,415,5154 0/0:151,0:151:99:0,403,5005 0/0:154,0:154:99:0,430,5251 0/0:152,0:152:99:0,418,5204 0/0:175,0:175:99:0,478,5899 0/0:167,0:167:99:0,460,5640 0/0:185,0:185:99:0,524,6667 0/0:186,0:186:99:0,509,6489 0/0:196,0:196:99:0,539,6950 0/0:182,0:182:99:0,491,6317 0/0:118,0:118:99:0,328,4052 0/0:150,0:150:99:0,400,4958 0/0:129,0:129:99:0,352,4352 0/0:142,1:143:99:0,391,4816 0/0:131,0:131:99:0,355,4460 0/0:186,0:186:99:0,488,6161 0/1:77,84:162:99:2577,0,2146 0/0:127,0:127:99:0,352,4353 0/0:125,0:125:99:0,331,4086 0/0:154,0:154:99:0,436,5340 0/0:167,0:167:99:0,472,5839 0/0:150,0:150:99:0,403,4973 0/0:144,0:144:99:0,406,4999 0/0:150,0:150:99:0,415,5140 0/0:122,0:122:99:0,358,4389 0/0:139,0:139:99:0,385,4763 14 35242828 . G A 46703.22 . AC=44;AF=0.524;AN=84;BaseQRankSum=-3.731;DP=3214;DS;Dels=0.00;FS=4.881;HRun=0;HaplotypeScore=0.9657;InbreedingCoeff=-0.0500;MQ=58.98;MQ0=0;MQRankSum=1.386;QD=18.98;ReadPosRankSum=-0.520 GT:AD:DP:GQ:PL 0/0:80,0:80:99:0,223,2687 0/1:27,23:50:99:616,0,811 1/1:0,50:50:99:1718,141,0 0/1:44,39:83:99:1139,0,1319 0/1:50,45:95:99:1259,0,1527 0/1:62,33:95:99:834,0,1898 0/1:53,39:92:99:1086,0,1643 0/0:82,0:82:99:0,226,2914 0/1:34,37:71:99:991,0,872 0/0:70,0:70:99:0,178,2152 1/1:0,60:60:99:1990,165,0 0/1:33,38:71:99:1085,0,861 0/1:40,24:64:99:586,0,1156 1/1:0,55:55:99:1792,144,0 0/1:123,102:225:99:2653,0,3279 0/1:23,30:53:99:906,0,565 0/1:44,29:73:99:775,0,1198 0/0:60,0:60:99:0,180,2097 0/0:107,1:108:99:0,255,3370 0/0:99,0:99:99:0,256,3068 1/1:0,80:80:99:2603,214,0 1/1:0,48:48:99:1647,141,0 1/1:1,98:99:99:3283,237,0 0/1:49,26:75:99:703,0,1615 1/1:0,68:68:99:2383,196,0 0/0:100,0:100:99:0,283,3697 0/1:29,18:47:99:449,0,862 0/0:76,0:76:99:0,202,2389 0/1:29,20:49:99:535,0,852 0/1:33,35:68:99:949,0,803 0/1:36,32:68:99:930,0,903 1/1:0,94:94:99:3166,262,0 0/1:24,28:52:99:824,0,633 0/1:49,31:80:99:832,0,1324 0/1:39,27:66:99:772,0,1046 0/0:78,0:78:99:0,217,2563 1/1:0,75:75:99:2465,205,0 1/1:0,78:78:99:2476,205,0 0/1:35,34:69:99:978,0,990 0/1:40,37:77:99:1044,0,1089 0/1:29,23:52:99:671,0,758 1/1:0,79:79:99:2564,211,0 14 35242863 . TGTTTTCCTC T 3515.44 . AC=2;AF=0.024;AN=84;BaseQRankSum=6.026;DP=2710;DS;FS=14.995;HRun=0;HaplotypeScore=509.6360;InbreedingCoeff=-0.0244;MQ=58.90;MQ0=0;MQRankSum=-6.569;QD=36.24;ReadPosRankSum=1.504 GT:AD:DP:GQ:PL 0/0:62,0:61:99:0,184,8519 0/0:52,0:52:99:0,157,7380 0/0:46,0:46:99:0,138,6135 0/0:86,0:86:99:0,259,12065 0/0:97,0:97:99:0,292,13823 0/0:82,0:80:99:0,244,11743 0/0:88,0:86:99:0,265,12389 0/0:84,0:83:99:0,253,11980 0/0:52,0:52:99:0,157,7369 0/0:50,0:50:99:0,150,6772 0/0:45,0:45:99:0,135,6199 0/0:54,0:54:99:0,163,7403 0/0:52,0:52:99:0,156,6872 0/0:41,0:41:99:0,123,5580 0/0:176,0:176:99:0,530,25010 0/0:41,0:41:99:0,123,5791 0/0:55,0:55:99:0,166,7659 0/0:60,0:59:99:0,181,8253 0/0:81,0:81:99:0,241,11249 0/0:70,0:70:99:0,208,9283 0/0:69,0:69:99:0,202,9438 0/0:47,0:47:99:0,141,6519 0/0:88,0:88:99:0,265,12486 0/0:89,0:85:99:0,268,12593 0/0:73,0:73:99:0,217,10245 0/0:97,0:91:99:0,289,13393 0/0:42,0:42:99:0,126,5484 0/0:61,0:61:99:0,184,8269 0/0:39,0:39:99:0,117,5271 0/1:22,24:46:99:1666,0,3079 0/0:48,0:48:99:0,144,6648 0/0:73,0:73:99:0,220,9806 0/1:25,26:51:99:1850,0,3224 0/0:57,0:57:99:0,168,7708 0/0:50,0:50:99:0,151,6736 0/0:59,0:59:99:0,172,8056 0/0:65,0:65:99:0,190,8606 0/0:61,0:61:99:0,184,8705 0/0:55,0:55:99:0,166,7425 0/0:68,0:68:99:0,205,9091 0/0:44,0:44:99:0,132,6049 0/0:54,0:54:99:0,163,7536 14 35871217 . G A 78579.41 . AC=31;AF=0.369;AN=84;BaseQRankSum=24.077;DP=7277;DS;Dels=0.00;FS=28.643;HRun=0;HaplotypeScore=3.2364;InbreedingCoeff=0.1309;MQ=59.04;MQ0=0;MQRankSum=2.045;QD=19.11;ReadPosRankSum=-0.576 GT:AD:DP:GQ:PL 0/1:66,82:148:99:2148,0,1586 1/1:0,155:157:99:5133,421,0 0/1:77,68:145:99:1839,0,1952 0/0:229,0:230:99:0,548,6892 0/0:223,0:223:99:0,572,7159 0/0:206,0:209:99:0,512,6460 0/0:184,0:184:99:0,445,5588 0/0:202,0:202:99:0,493,6138 0/0:161,0:161:99:0,424,4820 0/1:81,75:156:99:2054,0,1973 0/1:75,95:170:99:2658,0,1818 0/0:148,3:153:99:0,318,4342 0/1:77,69:148:99:1954,0,1910 0/0:153,0:153:99:0,406,4591 1/1:0,248:249:99:8307,689,0 0/1:53,54:107:99:1538,0,1330 1/1:1,154:155:99:4771,371,0 0/0:173,0:173:99:0,454,5113 0/1:109,95:205:99:2662,0,2672 0/1:131,119:250:99:3338,0,3236 1/1:0,238:239:99:8073,653,0 0/1:67,51:118:99:1369,0,1626 0/0:231,0:231:99:0,566,7220 0/1:86,76:162:99:1940,0,2359 1/1:0,160:161:99:5196,415,0 0/0:188,1:191:99:0,463,5775 0/0:123,0:123:99:0,307,3552 0/0:163,0:163:99:0,427,4875 0/0:146,0:146:99:0,379,4194 0/0:169,2:171:99:0,409,5001 0/0:142,1:143:99:0,353,4243 0/1:119,130:250:99:3469,0,2911 0/1:91,70:162:99:1809,0,2268 0/1:84,70:154:99:1901,0,2128 1/1:0,158:159:99:5071,412,0 0/1:79,84:164:99:2288,0,2013 0/1:121,92:213:99:2496,0,2803 1/1:2,156:158:99:4854,333,0 0/1:71,59:130:99:1724,0,1757 0/0:165,0:165:99:0,451,5028 0/0:143,1:144:99:0,344,4139 0/1:81,71:152:99:1989,0,1975 14 35873770 . G A 798.53 . AC=25;AF=0.338;AN=74;BaseQRankSum=-2.888;DP=174;Dels=0.00;FS=5.270;HRun=0;HaplotypeScore=0.3226;InbreedingCoeff=0.0569;MQ=56.05;MQ0=0;MQRankSum=1.891;QD=8.41;ReadPosRankSum=1.422 GT:AD:DP:GQ:PL ./. 1/1:0,3:4:6.02:66,6,0 0/1:1,3:4:24.41:59,0,24 0/1:7,4:11:53.64:54,0,99 0/1:5,5:10:77.32:77,0,136 0/0:6,0:6:6.02:0,6,78 0/0:9,0:9:12.03:0,12,127 0/0:8,0:8:12.04:0,12,150 0/0:3,0:3:3.01:0,3,36 0/0:2,0:2:3.01:0,3,37 0/1:3,0:3:1.76:0,3,33 ./. 0/1:2,1:3:25.33:25,0,54 0/0:1,0:2:3.01:0,3,38 0/1:6,7:13:99:110,0,142 ./. 0/0:2,2:4:6.02:0,6,69 0/0:7,0:7:18.04:0,18,202 0/0:4,0:4:9.02:0,9,100 0/1:4,5:9:44.10:107,0,44 0/0:1,0:1:3.01:0,3,37 0/0:3,0:4:6.01:0,6,62 1/1:0,9:9:6.02:69,6,0 0/0:4,0:4:9:0,9,100 0/1:3,2:5:29.55:55,0,30 0/0:3,0:3:6.02:0,6,79 0/0:3,0:3:3.01:0,3,33 0/0:2,0:2:6.02:0,6,70 0/0:4,0:4:6.02:0,6,73 1/1:0,1:1:3.01:36,3,0 1/1:0,3:4:6.01:63,6,0 0/1:6,1:7:18.40:18,0,109 1/1:1,1:2:3.01:30,3,0 1/1:0,1:1:3.01:38,3,0 ./. 0/1:2,1:3:22.63:23,0,30 ./. 1/1:0,4:4:9.02:98,9,0 0/0:2,0:2:3.01:0,3,38 0/0:2,0:3:6.01:0,6,59 0/0:1,0:1:3.01:0,3,38 0/1:1,1:2:19.68:28,0,20 14 35873775 . G T 159.18 . AC=12;AF=0.162;AN=74;BaseQRankSum=-1.626;DP=281;Dels=0.00;FS=4.536;HRun=1;HaplotypeScore=0.8724;InbreedingCoeff=-0.2636;MQ=56.56;MQ0=0;MQRankSum=-1.800;QD=1.37;ReadPosRankSum=0.287 GT:AD:DP:GQ:PL 0/1:2,2:4:17.68:18,0,26 0/0:4,2:6:6.02:0,6,68 0/0:4,0:4:6.02:0,6,70 0/1:12,4:16:15.40:15,0,149 0/1:10,3:13:22.75:23,0,136 0/0:5,4:9:3.01:0,3,39 0/0:6,6:12:6.02:0,6,69 0/0:4,5:9:6.01:0,6,61 ./. 0/1:5,1:6:28.34:29,0,28 0/1:1,2:3:27.42:27,0,27 0/1:4,4:8:27.10:61,0,27 0/0:3,2:5:6.01:0,6,63 0/0:4,0:4:6:0,6,60 0/0:13,3:16:18.03:0,18,199 ./. 0/0:4,2:6:5.99:0,6,59 0/0:8,1:9:15.05:0,15,185 0/0:2,0:2:6.01:0,6,64 0/1:14,3:17:7.30:7,0,237 0/1:2,3:5:1.76:0,3,31 0/0:3,2:5:3.01:0,3,36 0/1:12,9:21:1.76:0,3,30 0/0:5,1:6:15.04:0,15,176 0/0:5,5:10:6.02:0,6,71 0/0:6,0:6:6.02:0,6,79 0/1:2,3:5:24.58:29,0,25 0/0:2,3:5:6.02:0,6,68 0/0:3,4:7:9.03:0,9,114 0/0:1,0:2:3.01:0,3,34 0/0:4,2:6:3.01:0,3,36 0/0:10,1:11:9.03:0,9,108 ./. 0/0:2,1:3:6.02:0,6,73 0/1:6,5:11:14.67:15,0,61 0/1:5,2:7:49.01:49,0,67 ./. 0/0:2,1:3:6:0,6,60 0/0:1,1:2:3.01:0,3,35 ./. 0/0:1,1:2:3.01:0,3,37 0/0:4,1:5:6.01:0,6,63 14 36153177 . T C 11379.77 . AC=17;AF=0.202;AN=84;BaseQRankSum=12.290;DP=1851;Dels=0.00;FS=18.447;HRun=0;HaplotypeScore=1.0267;InbreedingCoeff=0.0413;MQ=48.29;MQ0=6;MQRankSum=-1.536;QD=15.23;ReadPosRankSum=-0.603 GT:AD:DP:GQ:PL 0/1:17,19:37:99:573,0,453 0/0:40,0:42:99:0,108,1259 0/0:50,0:50:99:0,120,1475 1/1:0,39:39:99:1282,99,0 0/1:35,30:65:99:824,0,947 0/1:20,30:50:99:874,0,499 0/0:37,0:38:93.29:0,93,1210 0/1:20,23:43:99:677,0,470 0/1:16,18:34:99:489,0,469 0/0:45,0:46:99:0,120,1453 0/1:12,11:23:99:319,0,350 0/0:47,0:48:99:0,138,1580 0/1:17,18:36:99:521,0,450 0/0:36,0:37:96.30:0,96,1215 0/1:71,80:156:99:2073,0,1900 0/0:24,0:24:66.19:0,66,799 0/1:20,26:47:99:758,0,498 0/0:35,0:36:99:0,102,1212 0/0:44,0:45:99:0,123,1461 0/0:37,0:37:96.26:0,96,1162 0/0:55,0:56:99:0,153,1847 0/1:19,10:29:99:237,0,568 0/1:27,29:56:99:646,0,774 0/0:45,0:46:99:0,120,1541 0/0:47,0:49:99:0,129,1594 0/0:36,0:36:96.31:0,96,1248 0/0:32,0:32:96.27:0,96,1150 0/0:45,0:45:99:0,123,1451 0/0:43,0:43:99:0,120,1422 0/0:37,0:38:93.26:0,93,1141 0/0:35,0:35:99:0,102,1229 0/1:30,17:48:99:415,0,825 0/0:24,0:24:69.21:0,69,838 0/1:27,20:47:99:518,0,784 1/1:0,37:37:93.29:1173,93,0 0/0:44,0:45:99:0,120,1469 0/0:49,0:55:99:0,138,1628 0/0:35,0:36:99:0,105,1233 0/0:31,0:31:93.26:0,93,1101 0/0:34,0:35:99:0,99,1167 0/0:43,0:44:99:0,111,1338 0/0:51,0:51:99:0,150,1804 14 36207766 . C T 167.12 . AC=5;AF=0.060;AN=84;BaseQRankSum=-18.423;DP=3369;Dels=0.00;FS=135.555;HRun=2;HaplotypeScore=1.1764;InbreedingCoeff=-0.0847;MQ=49.06;MQ0=93;MQRankSum=-0.695;QD=0.39;ReadPosRankSum=-12.164 GT:AD:DP:GQ:PL 0/0:39,12:51:29.15:0,29,947 0/0:50,12:62:38.20:0,38,1089 0/0:52,12:64:45.22:0,45,1159 0/0:163,39:202:99:0,283,3666 0/0:126,33:159:99:0,118,2654 0/0:134,20:154:99:0,272,3307 0/0:86,22:108:87.03:0,87,1933 0/0:98,16:115:99:0,222,2476 0/0:51,11:62:42.50:0,42,1092 0/1:44,22:66:99:150,0,900 0/0:47,6:53:69.51:0,70,982 0/1:36,8:44:26.40:26,0,692 0/0:33,12:45:55.41:0,55,765 0/0:56,9:65:44.84:0,45,1081 0/1:162,39:203:41.19:41,0,3151 0/1:29,9:38:28.45:28,0,696 0/0:62,7:69:73.27:0,73,1214 0/0:38,12:50:9.92:0,10,807 0/0:46,21:67:23.72:0,24,988 0/0:83,12:95:99:0,134,1891 0/1:55,19:75:13.47:13,0,1102 0/0:33,12:45:51.31:0,51,666 0/0:153,26:179:99:0,221,3228 0/0:103,24:127:99:0,180,2343 0/0:133,18:151:99:0,221,2823 0/0:109,23:133:99:0,167,2378 0/0:22,6:28:39.08:0,39,421 0/0:34,5:39:10.89:0,11,586 0/0:42,4:46:26.02:0,26,834 0/0:45,8:53:38.34:0,38,908 0/0:32,15:48:19.66:0,20,654 0/0:62,12:75:39.70:0,40,1420 0/0:45,10:55:43.21:0,43,836 0/0:43,12:55:2.39:1,0,916 0/0:49,14:63:47.08:0,47,989 0/0:61,14:75:32.51:0,33,1100 0/0:36,13:50:40.39:0,40,718 0/0:47,11:58:0.76:7,0,963 0/0:44,13:57:27.27:0,27,976 0/0:48,15:63:71.79:0,72,1140 0/0:47,12:59:29.40:0,29,1058 0/0:51,12:63:77.73:0,78,1010 14 36211652 . G T 233.08 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.683;DP=1744;Dels=0.00;FS=3.249;HRun=1;HaplotypeScore=0.5026;InbreedingCoeff=-0.0121;MQ=25.09;MQ0=595;MQRankSum=2.009;QD=6.13;ReadPosRankSum=0.177 GT:AD:DP:GQ:PL 0/0:38,0:38:90.25:0,90,1019 0/0:45,0:45:75.19:0,75,857 0/0:29,0:29:54.15:0,54,620 0/0:69,0:69:99:0,144,1640 0/0:66,0:66:99:0,159,1821 0/0:48,0:48:93.27:0,93,1081 0/0:48,0:48:99:0,102,1160 0/0:63,0:63:99:0,138,1603 0/0:40,0:40:84.24:0,84,952 0/0:38,0:38:57.17:0,57,666 0/0:31,0:31:60.17:0,60,689 0/0:40,0:40:75.22:0,75,870 0/0:30,0:30:66.19:0,66,763 0/0:24,0:24:45.13:0,45,536 0/0:110,0:110:99:0,202,2301 0/0:26,0:26:48.13:0,48,539 0/1:23,15:38:99:279,0,381 0/0:38,0:38:66.19:0,66,752 0/0:50,0:50:75.22:0,75,864 0/0:32,0:32:63.16:0,63,711 0/0:44,0:44:87.25:0,87,1000 0/0:33,0:33:54.16:0,54,650 0/0:67,0:67:99:0,141,1631 0/0:49,0:49:96.27:0,96,1088 0/0:49,0:49:99:0,111,1257 0/0:49,0:49:99:0,105,1209 0/0:31,0:31:42.12:0,42,476 0/0:32,0:32:63.17:0,63,738 0/0:31,0:31:60.17:0,60,685 0/0:34,0:34:69.20:0,69,796 0/0:29,0:29:60.17:0,60,684 0/0:41,0:41:69.20:0,69,806 0/0:26,0:26:33.09:0,33,377 0/0:34,0:34:60.18:0,60,702 0/0:35,0:35:72.21:0,72,822 0/0:41,0:41:81.23:0,81,915 0/0:36,1:37:39.57:0,40,725 0/0:38,0:38:60.18:0,60,704 0/0:38,0:38:90.25:0,90,1045 0/0:39,0:39:57.17:0,57,683 0/0:32,0:32:69.20:0,69,794 0/0:32,0:32:69.20:0,69,806 14 36211700 . T C 1402.20 . 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T C 1134.01 . 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G C 1454.72 . 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C T 3330.98 . 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C G 140.77 . 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C T 1040.26 . 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G C 3909.22 . 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C T 39242.52 . 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T C 18389.32 . 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G C 57059.45 . 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A G 22325.84 . 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G C 5046.93 . 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C T 5108.59 . 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C T 282.19 . 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A G 922.44 . 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G A 6237.67 . 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A G 116924.10 . 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G A 76756.35 . 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C T 2214.30 . 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G C 8.61 . 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G T 3974.64 . 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T C 3797.89 . 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G A 142315 . 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A C 4126.53 . 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A C 29580.96 . 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A G 22447.77 . 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C A 536.26 . 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G A 2724.36 . 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A T 5366.39 . 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G A 487.91 . 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G T 6263.62 . 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T C 6052.97 . AC=3;AF=0.036;AN=84;BaseQRankSum=19.464;DP=6615;DS;Dels=0.00;FS=2.784;HRun=0;HaplotypeScore=3.0443;InbreedingCoeff=-0.0370;MQ=59.23;MQ0=0;MQRankSum=1.296;QD=12.58;ReadPosRankSum=1.272 GT:AD:DP:GQ:PL 0/0:125,0:125:99:0,340,4006 0/0:144,0:144:99:0,385,4593 0/0:101,0:101:99:0,268,3189 0/0:228,0:230:99:0,614,7276 0/0:235,0:235:99:0,629,7606 0/0:222,0:223:99:0,596,7356 0/1:107,72:179:99:2162,0,3039 0/1:112,81:193:99:2404,0,3082 0/0:120,1:121:99:0,346,4013 0/0:128,0:128:99:0,361,4175 0/0:128,2:130:99:0,329,4180 0/0:131,0:131:99:0,358,4253 0/0:114,0:117:99:0,319,3734 0/0:122,0:123:99:0,346,4073 0/0:231,3:236:99:0,644,7463 0/0:117,0:117:99:0,325,3809 0/0:142,1:143:99:0,397,4688 0/0:124,0:124:99:0,337,3983 0/0:233,0:234:99:0,632,7529 0/0:196,0:196:99:0,523,6213 0/0:229,0:231:99:0,608,7309 0/0:146,1:147:99:0,373,4686 0/0:233,1:234:99:0,644,7648 0/0:194,0:194:99:0,490,6016 0/0:207,0:207:99:0,536,6559 0/0:152,0:152:99:0,403,4839 0/0:120,0:120:99:0,319,3782 0/0:101,0:101:99:0,274,3246 0/0:116,0:116:99:0,334,3908 0/0:127,1:128:99:0,313,4102 0/1:59,50:109:99:1486,0,1581 0/0:230,0:230:99:0,614,7326 0/0:158,1:160:99:0,406,5169 0/0:111,0:111:99:0,298,3583 0/0:133,0:133:99:0,370,4351 0/0:140,0:140:99:0,397,4675 0/0:218,0:218:99:0,581,6990 0/0:151,0:151:99:0,409,4821 0/0:131,0:131:99:0,367,4297 0/0:136,0:136:99:0,376,4448 0/0:94,0:95:99:0,265,3044 0/0:140,1:141:99:0,355,4584 14 51370852 . C G 29940.32 . 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A C 2255.38 . AC=2;AF=0.024;AN=84;BaseQRankSum=9.885;DP=5489;DS;Dels=0.00;FS=5.906;HRun=1;HaplotypeScore=2.0499;InbreedingCoeff=-0.0244;MQ=59.55;MQ0=0;MQRankSum=0.504;QD=11.00;ReadPosRankSum=-0.252 GT:AD:DP:GQ:PL 0/1:58,43:101:99:1210,0,1637 0/1:63,41:104:99:1108,0,1830 0/0:83,0:83:99:0,235,2817 0/0:143,0:143:99:0,400,4825 0/0:173,0:173:99:0,481,5874 0/0:205,0:205:99:0,569,7146 0/0:180,0:180:99:0,500,6144 0/0:156,1:157:99:0,427,5204 0/0:106,0:106:99:0,301,3587 0/0:98,0:98:99:0,262,3130 0/0:101,0:101:99:0,301,3553 0/0:100,0:101:99:0,280,3340 0/0:88,0:88:99:0,250,2983 0/0:91,0:91:99:0,256,3089 0/0:177,0:179:99:0,469,5623 0/0:72,0:72:99:0,193,2351 0/0:107,0:107:99:0,301,3618 0/0:98,0:98:99:0,262,3157 0/0:181,0:181:99:0,499,5998 0/0:188,0:188:99:0,518,6254 0/0:183,0:183:99:0,503,6070 0/0:150,0:150:99:0,400,4805 0/0:175,0:175:99:0,506,6122 0/0:176,0:176:99:0,478,5868 0/0:184,0:184:99:0,493,6065 0/0:166,0:166:99:0,433,5397 0/0:87,0:87:99:0,232,2824 0/0:87,0:88:99:0,253,2957 0/0:103,0:103:99:0,277,3361 0/0:98,0:98:99:0,277,3325 0/0:105,0:105:99:0,298,3601 0/0:204,0:204:99:0,527,6531 0/0:137,0:137:99:0,370,4459 0/0:125,0:125:99:0,337,4103 0/0:113,0:113:99:0,325,3879 0/0:98,0:98:99:0,262,3206 0/0:226,0:226:99:0,599,7296 0/0:116,0:117:99:0,304,3691 0/0:111,0:112:99:0,316,3734 0/0:102,1:103:99:0,247,3323 0/0:92,0:92:99:0,256,3027 0/0:90,0:91:99:0,256,3086 14 51372120 . T C 3777.04 . AC=2;AF=0.024;AN=84;BaseQRankSum=15.804;DP=4150;DS;Dels=0.00;FS=12.712;HRun=0;HaplotypeScore=0.9342;InbreedingCoeff=-0.0244;MQ=59.46;MQ0=0;MQRankSum=5.223;QD=13.16;ReadPosRankSum=-0.040 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,159,1945 0/0:74,0:74:99:0,205,2511 0/0:88,0:88:99:0,253,3086 0/0:169,0:169:99:0,454,5646 0/0:143,0:143:99:0,379,4801 0/1:87,68:155:99:2178,0,2505 0/0:142,0:142:99:0,388,4916 0/1:81,51:132:99:1599,0,2273 0/0:76,0:76:99:0,211,2546 0/0:75,0:75:99:0,190,2343 0/0:77,0:77:99:0,208,2530 0/0:86,0:86:99:0,238,2880 0/0:59,0:59:99:0,166,1999 0/0:73,0:74:99:0,208,2521 0/0:250,0:250:99:0,641,7919 0/0:65,0:65:99:0,181,2180 0/0:59,0:59:99:0,169,2044 0/0:65,0:65:99:0,190,2300 0/0:129,0:129:99:0,355,4393 0/0:120,0:120:99:0,325,4021 0/0:115,0:115:99:0,304,3752 0/0:81,0:81:99:0,211,2605 0/0:157,0:157:99:0,427,5321 0/0:143,0:144:99:0,373,4764 0/0:152,0:152:99:0,418,5174 0/0:118,0:118:99:0,325,4100 0/0:44,0:44:99:0,126,1516 0/0:73,0:73:99:0,217,2596 0/0:85,0:85:99:0,238,2863 0/0:93,0:93:99:0,250,3069 0/0:71,0:71:99:0,202,2445 0/0:133,0:133:99:0,325,4122 0/0:79,0:79:99:0,211,2594 0/0:85,0:85:99:0,241,2921 0/0:70,0:70:99:0,199,2410 0/0:84,0:84:99:0,232,2816 0/0:100,0:100:99:0,250,3126 0/0:92,0:92:99:0,259,3150 0/0:56,0:56:99:0,166,2001 0/0:73,0:73:99:0,211,2543 0/0:71,0:71:99:0,202,2445 0/0:78,0:78:99:0,214,2618 14 51372238 . T A 2376.70 . AC=2;AF=0.024;AN=84;BaseQRankSum=6.654;DP=4978;DS;Dels=0.00;FS=0.807;HRun=1;HaplotypeScore=1.7393;InbreedingCoeff=-0.0244;MQ=59.58;MQ0=1;MQRankSum=0.134;QD=14.06;ReadPosRankSum=0.329 GT:AD:DP:GQ:PL 0/1:39,32:71:99:942,0,1097 0/1:42,56:98:99:1498,0,1147 0/0:80,0:80:99:0,217,2642 0/0:245,0:245:99:0,650,7997 0/0:237,0:237:99:0,611,7634 0/0:233,0:233:99:0,605,7689 0/0:219,0:219:99:0,563,7113 0/0:216,0:216:99:0,575,7118 0/0:97,0:97:99:0,250,3023 0/0:63,0:63:99:0,162,1980 0/0:90,0:90:99:0,250,3017 0/0:85,0:85:99:0,223,2730 0/0:89,0:89:99:0,226,2767 0/0:71,0:71:99:0,211,2521 0/0:217,0:217:99:0,581,6896 0/0:75,0:75:99:0,196,2351 0/0:76,0:76:99:0,217,2644 0/0:93,0:93:99:0,253,3042 0/0:104,0:104:99:0,283,3444 0/0:104,0:105:99:0,286,3490 0/0:107,0:107:99:0,280,3397 0/0:78,0:78:99:0,211,2551 0/0:234,0:234:99:0,623,7720 0/0:210,0:210:99:0,554,6883 0/0:222,0:222:99:0,584,7273 0/0:216,0:216:99:0,569,7045 0/0:88,0:88:99:0,241,2916 0/0:89,0:89:99:0,247,2980 0/0:61,1:62:99:0,136,1968 0/0:76,0:76:99:0,217,2573 0/0:81,0:81:99:0,217,2636 0/0:107,0:107:99:0,283,3473 0/0:78,0:78:99:0,205,2497 0/0:82,0:82:99:0,232,2794 0/0:72,0:72:99:0,193,2337 0/0:89,0:89:99:0,247,2977 0/0:103,0:103:99:0,259,3155 0/0:99,0:99:99:0,265,3205 0/0:84,0:84:99:0,226,2761 0/0:94,0:94:99:0,262,3151 0/0:70,0:70:99:0,196,2340 0/0:73,0:73:99:0,202,2395 14 51446216 . T G 199229.59 . AC=51;AF=0.607;AN=84;BaseQRankSum=64.845;DP=9771;DS;Dels=0.00;FS=10.200;HRun=0;HaplotypeScore=3.0275;InbreedingCoeff=0.1515;MQ=59.66;MQ0=0;MQRankSum=0.392;QD=25.27;ReadPosRankSum=-0.498 GT:AD:DP:GQ:PL 0/0:234,0:234:99:0,617,7563 0/0:234,0:234:99:0,608,7429 0/1:104,116:220:99:3402,0,2819 0/1:131,119:250:99:3716,0,3783 0/1:130,120:250:99:4011,0,3582 1/1:1,249:250:99:9528,670,0 0/1:121,129:250:99:4184,0,3490 1/1:2,248:250:99:9313,645,0 0/1:123,121:244:99:3552,0,3327 1/1:0,216:216:99:7420,578,0 0/0:228,3:232:99:0,494,7206 1/1:1,211:212:99:7360,578,0 1/1:5,195:200:99:6494,398,0 0/1:117,127:244:99:3708,0,3197 1/1:1,249:250:99:8816,707,0 0/1:91,115:206:99:3502,0,2473 1/1:0,246:246:99:8335,644,0 0/1:122,95:217:99:2549,0,3520 0/1:127,122:250:99:3777,0,3509 1/1:1,247:249:99:8581,674,0 0/0:250,0:250:99:0,695,8358 0/1:117,133:250:99:3891,0,3064 0/1:131,119:250:99:3898,0,3680 1/1:0,250:250:99:9474,692,0 1/1:0,249:250:99:9540,698,0 1/1:1,248:249:99:9311,651,0 1/1:0,184:184:99:6450,503,0 0/1:102,129:231:99:3885,0,2711 1/1:0,182:183:99:6548,509,0 0/0:234,0:234:99:0,638,7633 0/0:211,0:212:99:0,581,7045 0/1:128,122:250:99:3509,0,3537 0/0:242,0:242:99:0,644,7789 1/1:0,245:245:99:8345,650,0 1/1:1,237:238:99:8153,635,0 0/1:115,114:230:99:3418,0,3157 0/0:250,0:250:99:0,656,8028 0/1:112,110:222:99:3163,0,2917 0/1:106,91:197:99:2658,0,2926 1/1:1,244:245:99:8438,638,0 1/1:2,201:203:99:6993,490,0 0/1:90,112:202:99:3307,0,2480 14 52182081 . T A 49132.42 . AC=53;AF=0.631;AN=84;BaseQRankSum=-11.938;DP=2581;Dels=0.00;FS=2.776;HRun=0;HaplotypeScore=1.2832;InbreedingCoeff=0.0286;MQ=58.84;MQ0=0;MQRankSum=1.665;QD=22.58;ReadPosRankSum=-1.636 GT:AD:DP:GQ:PL 0/1:30,26:56:99:746,0,901 0/1:26,22:48:99:595,0,779 0/0:47,0:47:99:0,129,1601 0/1:62,53:115:99:1475,0,1721 0/0:103,0:103:99:0,274,3565 0/0:95,0:95:99:0,250,3273 0/1:48,40:88:99:1040,0,1391 0/1:52,41:93:99:1122,0,1505 1/1:0,49:49:99:1543,123,0 1/1:0,40:41:99:1412,117,0 1/1:0,35:35:99:1216,99,0 0/1:20,28:48:99:771,0,565 0/1:28,22:50:99:643,0,725 0/1:24,27:53:99:738,0,693 1/1:0,159:159:99:5220,421,0 1/1:0,40:40:99:1358,111,0 1/1:0,42:42:99:1389,114,0 0/1:19,19:38:99:554,0,566 0/1:43,36:80:99:927,0,1224 1/1:0,82:82:99:2785,223,0 0/0:62,0:63:99:0,169,2111 0/0:51,0:51:99:0,141,1749 0/1:47,47:94:99:1406,0,1419 0/1:29,28:57:99:765,0,815 0/1:50,34:84:99:931,0,1532 1/1:0,82:82:99:2821,220,0 0/1:25,8:33:99:203,0,808 0/1:27,31:58:99:915,0,680 1/1:0,39:39:99:1317,105,0 1/1:0,50:50:99:1798,147,0 1/1:0,36:36:99:1295,105,0 0/1:39,54:93:99:1536,0,1049 1/1:0,52:52:99:1755,144,0 1/1:0,44:44:99:1520,123,0 1/1:0,36:36:93.29:1186,93,0 1/1:0,48:48:99:1695,138,0 1/1:0,69:69:99:2350,190,0 0/1:18,28:46:99:798,0,537 1/1:0,37:37:99:1331,108,0 0/0:46,0:46:99:0,123,1553 0/1:18,27:45:99:840,0,501 0/1:18,38:56:99:1136,0,487 14 52535648 . G T 30651.85 . AC=65;AF=0.774;AN=84;BaseQRankSum=-6.136;DP=1504;Dels=0.00;FS=28.172;HRun=0;HaplotypeScore=1.2203;InbreedingCoeff=0.1157;MQ=58.56;MQ0=0;MQRankSum=-0.242;QD=23.26;ReadPosRankSum=5.770 GT:AD:DP:GQ:PL 0/1:18,9:27:99:239,0,538 0/1:17,10:27:99:253,0,518 0/1:14,6:20:99:157,0,421 0/1:45,32:77:99:810,0,1228 0/0:85,0:85:99:0,229,2955 0/0:66,0:66:99:0,165,2116 0/1:27,17:44:99:440,0,760 0/1:24,23:47:99:586,0,603 1/1:1,26:27:72.21:862,72,0 1/1:1,30:32:87.21:1014,87,0 1/1:0,28:28:75.22:906,75,0 1/1:0,27:27:78.24:939,78,0 1/1:0,25:26:57.17:698,57,0 1/1:0,41:41:99:1346,114,0 0/1:24,36:60:99:1010,0,594 1/1:1,34:35:96.29:1157,96,0 0/0:34,0:35:99:0,102,1219 0/1:7,18:25:99:470,0,158 1/1:1,42:43:99:1341,108,0 1/1:1,56:57:99:1770,150,0 1/1:0,41:41:99:1302,108,0 1/1:0,32:32:87.24:1021,87,0 0/1:62,24:88:99:581,0,1732 1/1:2,28:30:60.56:980,61,0 1/1:0,34:34:96.28:1162,96,0 1/1:0,28:28:66.20:821,66,0 0/1:14,14:28:99:378,0,378 0/1:19,11:30:99:249,0,589 1/1:0,11:12:30.09:358,30,0 1/1:0,22:22:60.17:714,60,0 1/1:0,24:24:72.21:868,72,0 1/1:1,35:36:87.26:1062,87,0 1/1:0,27:27:69.21:848,69,0 1/1:0,25:25:63.18:754,63,0 1/1:0,27:27:69.21:835,69,0 1/1:0,30:30:87.25:1047,87,0 0/1:26,10:37:99:262,0,588 0/1:19,11:30:99:298,0,516 1/1:0,27:27:75.21:889,75,0 1/1:0,17:17:48.15:577,48,0 1/1:1,21:22:32.59:703,33,0 1/1:0,28:28:78.23:943,78,0 14 52923820 . T C 1600.25 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.844;DP=3717;Dels=0.00;FS=0.514;HRun=1;HaplotypeScore=0.9830;InbreedingCoeff=-0.0244;MQ=59.55;MQ0=0;MQRankSum=-0.216;QD=12.22;ReadPosRankSum=-0.166 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,178,2183 0/0:85,0:85:99:0,220,2731 0/0:55,0:55:99:0,147,1806 0/0:119,0:119:99:0,319,3926 0/0:104,0:105:99:0,286,3528 0/0:109,0:109:99:0,289,3703 0/0:95,1:96:99:0,241,3049 0/0:116,0:116:99:0,301,3800 0/0:74,0:74:99:0,196,2401 0/0:81,2:83:99:0,166,2493 0/0:87,0:87:99:0,238,2917 0/0:93,0:93:99:0,256,3125 0/0:70,0:70:99:0,193,2330 0/0:64,0:64:99:0,172,2116 0/0:243,0:243:99:0,584,7334 0/0:49,0:49:99:0,129,1564 0/0:82,0:82:99:0,223,2718 0/0:66,0:66:99:0,181,2215 0/0:108,0:108:99:0,262,3298 0/0:114,0:114:99:0,292,3596 0/0:114,0:114:99:0,283,3548 0/0:62,0:62:99:0,169,2073 0/0:146,0:146:99:0,394,4848 0/0:100,0:100:99:0,265,3362 0/0:132,0:132:99:0,355,4429 0/0:104,0:104:99:0,283,3539 0/1:32,26:59:99:737,0,870 0/0:77,0:77:99:0,205,2498 0/1:39,33:72:99:926,0,1151 0/0:70,0:70:99:0,187,2285 0/0:53,0:53:99:0,141,1751 0/0:86,0:86:99:0,226,2804 0/0:68,0:68:99:0,178,2163 0/0:82,0:82:99:0,229,2787 0/0:66,0:66:99:0,175,2150 0/0:81,0:81:99:0,211,2605 0/0:84,0:84:99:0,214,2626 0/0:84,0:84:99:0,220,2697 0/0:69,0:69:99:0,187,2285 0/0:80,0:80:99:0,220,2692 0/0:70,0:70:99:0,184,2271 0/0:73,0:73:99:0,205,2509 14 52937255 . C T 7670.62 . AC=11;AF=0.131;AN=84;BaseQRankSum=-0.905;DP=2104;Dels=0.00;FS=4.504;HRun=2;HaplotypeScore=0.4615;InbreedingCoeff=-0.1507;MQ=59.36;MQ0=0;MQRankSum=1.385;QD=13.60;ReadPosRankSum=-1.319 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,120,1469 0/0:50,0:50:99:0,117,1443 0/0:43,0:43:99:0,114,1408 0/1:31,34:65:99:948,0,804 0/1:40,25:65:99:712,0,1307 0/0:81,0:81:99:0,220,2818 0/0:60,0:60:99:0,147,1962 0/0:87,0:87:99:0,220,2834 0/0:50,0:50:99:0,138,1646 0/1:23,16:39:99:434,0,642 0/0:45,0:45:99:0,132,1585 0/0:41,0:41:99:0,114,1391 0/0:32,0:32:87.26:0,87,1071 0/0:43,0:43:99:0,117,1437 0/0:122,0:122:99:0,319,3923 0/0:31,0:31:93.28:0,93,1135 0/0:47,2:49:61.42:0,61,1479 0/1:19,21:40:99:587,0,559 0/0:50,0:50:99:0,144,1691 0/0:47,0:47:99:0,135,1646 0/1:38,29:67:99:786,0,990 0/1:21,17:38:99:501,0,577 0/0:94,1:95:99:0,207,3133 0/1:15,25:40:99:689,0,439 0/1:37,42:80:99:1264,0,1065 0/0:58,0:58:99:0,157,2052 0/0:34,0:34:99:0,99,1201 0/0:52,0:53:99:0,150,1791 0/0:26,1:27:44.50:0,45,775 0/1:19,20:39:99:592,0,519 0/1:18,18:36:99:546,0,527 0/0:51,0:51:99:0,132,1627 0/0:36,0:36:96.29:0,96,1170 0/0:48,0:48:99:0,129,1589 0/0:40,0:40:99:0,114,1383 0/0:37,0:37:99:0,102,1232 0/0:45,0:45:99:0,126,1489 0/0:36,0:36:99:0,105,1254 0/0:36,0:36:99:0,102,1221 0/0:35,0:35:99:0,99,1178 0/0:34,0:34:96.29:0,96,1171 0/1:31,24:55:99:611,0,867 14 53098902 . G A 28886.94 . AC=35;AF=0.417;AN=84;BaseQRankSum=13.292;DP=2215;Dels=0.00;FS=2.182;HRun=0;HaplotypeScore=1.0066;InbreedingCoeff=-0.0286;MQ=59.39;MQ0=0;MQRankSum=-0.659;QD=19.85;ReadPosRankSum=0.408 GT:AD:DP:GQ:PL 0/1:15,21:36:99:629,0,371 0/0:41,2:43:78.56:0,79,1294 0/1:20,21:41:99:608,0,537 0/1:47,35:82:99:969,0,1296 0/0:62,0:62:99:0,184,2262 0/0:65,0:65:99:0,172,2163 0/0:45,1:46:87.82:0,88,1495 0/1:33,42:75:99:1214,0,908 1/1:0,51:51:99:1747,141,0 0/1:15,18:33:99:550,0,366 0/1:18,28:46:99:824,0,451 0/1:17,22:39:99:625,0,439 0/1:17,11:28:99:316,0,463 0/0:31,1:32:64.60:0,65,982 0/0:108,0:108:99:0,280,3245 0/1:22,17:39:99:514,0,550 0/1:12,26:38:99:774,0,299 0/1:19,17:36:99:502,0,500 0/1:32,36:68:99:1008,0,749 0/1:36,40:76:99:1066,0,975 0/1:43,36:79:99:1044,0,1117 0/0:53,0:53:99:0,144,1600 1/1:0,97:97:99:3197,253,0 0/0:60,0:60:99:0,159,2006 0/0:72,0:72:99:0,196,2472 0/0:59,0:59:99:0,159,1978 1/1:0,33:33:96.29:1165,96,0 1/1:0,57:57:99:2039,169,0 1/1:0,40:40:99:1356,111,0 0/0:30,0:30:84.22:0,84,943 0/0:39,0:39:99:0,114,1270 0/1:50,39:89:99:974,0,1240 0/1:26,30:56:99:827,0,669 0/0:36,0:36:99:0,105,1118 0/1:18,28:46:99:839,0,439 0/1:21,24:45:99:712,0,544 0/1:25,28:53:99:846,0,651 0/1:14,29:43:99:774,0,344 0/0:55,0:55:99:0,156,1745 1/1:0,36:36:99:1318,108,0 1/1:0,47:47:99:1663,138,0 0/1:20,26:46:99:788,0,530 14 53099011 . A G 437.48 . AC=13;AF=0.155;AN=84;BaseQRankSum=-14.787;DP=2731;Dels=0.00;FS=1852.971;HRun=3;HaplotypeScore=1.3704;InbreedingCoeff=-0.1958;MQ=59.14;MQ0=0;MQRankSum=0.798;QD=0.52;ReadPosRankSum=-20.201 GT:AD:DP:GQ:PL 0/0:30,15:46:54.74:0,55,928 0/0:38,13:51:76.53:0,77,1196 0/0:38,11:49:85.78:0,86,1307 0/0:71,39:110:33.26:0,33,2147 0/0:57,30:87:18.84:0,19,1746 0/0:58,29:87:99:0,126,1912 0/0:46,33:79:96.70:0,97,1443 0/0:64,25:89:99:0,133,2197 0/0:34,19:53:9.74:0,10,1098 0/0:20,12:32:27.51:0,28,638 0/0:34,17:51:15.43:0,15,1050 0/1:30,19:49:34.76:35,0,968 0/0:35,13:48:1.41:4,0,1054 0/0:39,14:53:58.66:0,59,1067 0/1:100,49:149:37.50:37,0,2868 0/1:26,15:41:12.25:12,0,763 0/1:25,15:40:41.70:42,0,804 0/1:35,17:52:47.79:48,0,1075 0/1:66,26:92:23.52:24,0,2045 0/0:56,26:82:60.60:0,61,1772 0/0:59,18:77:90.26:0,90,1820 0/0:49,10:59:84.83:0,85,1633 0/1:62,35:97:13.72:14,0,1915 0/0:54,23:77:61.56:0,62,1678 0/0:52,32:84:99:0,153,1845 0/0:50,32:82:83.44:0,83,1683 0/1:30,11:41:29.46:29,0,961 0/0:40,14:54:69.31:0,69,1141 0/1:32,18:50:21.54:22,0,977 0/1:27,11:38:99:129,0,818 0/0:35,19:54:44.70:0,45,1086 0/0:64,21:85:99:0,152,2038 0/0:47,17:64:63.84:0,64,1427 0/1:51,25:76:40.97:41,0,1627 0/0:39,12:51:53.45:0,53,1253 0/0:41,20:61:99:0,113,1351 0/1:41,24:65:81.30:81,0,1206 0/0:41,17:58:36.17:0,36,1258 0/0:45,11:56:99:0,103,1496 0/1:38,21:59:69.06:69,0,1155 0/0:36,13:49:36.75:0,37,1146 0/0:41,13:54:86.83:0,87,1363 14 53162089 . G A 88.36 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.881;DP=236;Dels=0.00;FS=4.411;HRun=0;HaplotypeScore=0.2489;InbreedingCoeff=-0.0593;MQ=58.81;MQ0=0;MQRankSum=0.064;QD=9.82;ReadPosRankSum=0.708 GT:AD:DP:GQ:PL 0/1:1,3:4:27.28:95,0,27 0/1:3,2:5:55.46:55,0,97 0/0:5,0:5:12.04:0,12,154 0/0:7,0:7:18.05:0,18,230 0/0:7,0:7:18.06:0,18,233 0/0:5,0:5:15.05:0,15,197 0/0:4,0:4:9.03:0,9,126 0/0:8,0:8:21.05:0,21,255 0/0:3,0:3:9.02:0,9,102 0/0:8,0:8:24.08:0,24,301 0/0:4,0:4:9.03:0,9,112 0/0:7,0:7:21.07:0,21,264 0/0:1,0:1:3.01:0,3,36 0/0:9,0:9:18.06:0,18,237 0/0:17,0:17:42.13:0,42,542 0/0:8,0:8:24.04:0,24,267 0/0:2,0:2:6.01:0,6,66 0/0:4,0:4:9.03:0,9,112 0/0:4,0:4:12.04:0,12,150 0/0:6,0:6:18.06:0,18,226 0/0:3,0:3:9.01:0,9,92 0/0:3,0:3:9.02:0,9,101 0/0:8,0:8:24.07:0,24,310 0/0:2,0:2:3.01:0,3,45 0/0:8,0:9:21.07:0,21,283 0/0:10,0:10:27.08:0,27,349 0/0:6,0:6:15.05:0,15,201 0/0:6,0:6:18.03:0,18,204 0/0:5,0:5:12.04:0,12,154 0/0:6,0:6:18.04:0,18,216 0/0:3,0:3:9.03:0,9,117 0/0:8,0:8:15.04:0,15,198 0/0:10,0:10:21.07:0,21,277 0/0:4,0:4:12.03:0,12,143 0/0:4,0:4:12.04:0,12,146 0/0:7,0:7:18.06:0,18,240 0/0:4,0:4:12.04:0,12,154 0/0:4,0:4:12.03:0,12,145 0/0:4,0:4:12.04:0,12,154 0/0:7,0:7:21.07:0,21,267 0/0:3,0:3:6.02:0,6,83 0/0:2,0:2:6.02:0,6,78 14 55004449 . G A 1183.83 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.300;DP=1379;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.6844;InbreedingCoeff=-0.0244;MQ=59.48;MQ0=0;MQRankSum=-0.168;QD=14.09;ReadPosRankSum=-0.401 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,99,1261 0/0:36,0:36:99:0,102,1293 0/0:34,0:34:90.28:0,90,1158 0/0:44,0:44:99:0,114,1544 0/0:30,0:30:87.29:0,87,1189 0/0:45,0:45:99:0,123,1678 0/0:48,0:48:99:0,141,1921 0/0:33,0:33:87.29:0,87,1208 0/0:30,0:30:81.25:0,81,1044 0/0:17,0:17:48.15:0,48,609 0/0:31,0:31:87.24:0,87,1037 0/0:33,0:33:93.30:0,93,1191 0/0:30,0:30:81.26:0,81,1049 0/0:23,0:23:66.21:0,66,832 0/0:87,0:87:99:0,226,2881 0/0:17,0:17:42.13:0,42,535 0/0:26,0:26:69.19:0,69,859 0/0:33,0:33:93.30:0,93,1194 0/0:32,0:32:93.29:0,93,1168 0/0:33,0:33:90.28:0,90,1145 0/0:33,0:33:90.27:0,90,1119 0/0:26,0:26:69.22:0,69,899 0/1:26,25:51:99:721,0,858 0/0:29,0:29:75.25:0,75,1042 0/0:50,0:50:99:0,126,1726 0/0:44,0:44:99:0,114,1559 0/0:20,0:20:60.19:0,60,758 0/1:14,19:33:99:525,0,423 0/0:23,0:23:66.21:0,66,835 0/0:26,0:26:66.21:0,66,862 0/0:24,0:24:66.21:0,66,840 0/0:43,0:43:99:0,105,1407 0/0:23,0:23:66.20:0,66,834 0/0:29,0:29:81.23:0,81,1027 0/0:32,0:32:93.28:0,93,1158 0/0:36,0:36:93.30:0,93,1218 0/0:24,0:24:57.16:0,57,694 0/0:28,0:28:75.23:0,75,950 0/0:30,0:30:78.25:0,78,1013 0/0:24,0:24:66.21:0,66,847 0/0:26,0:26:72.23:0,72,929 0/0:28,0:28:78.25:0,78,1010 14 55004457 . G C 244.52 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.875;DP=1477;Dels=0.00;FS=8.872;HRun=0;HaplotypeScore=0.6433;InbreedingCoeff=-0.0120;MQ=59.53;MQ0=0;MQRankSum=0.638;QD=6.61;ReadPosRankSum=-1.418 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,108,1352 0/0:37,0:37:99:0,105,1350 0/0:39,0:39:99:0,99,1294 0/0:48,0:48:99:0,120,1671 0/0:29,0:29:84.28:0,84,1162 0/0:49,0:49:99:0,141,1966 0/0:48,0:48:99:0,138,1937 0/1:27,10:37:99:291,0,880 0/0:33,0:33:87.26:0,87,1122 0/0:17,0:17:48.15:0,48,621 0/0:34,0:34:93.30:0,93,1194 0/0:35,0:35:99:0,99,1270 0/0:35,0:35:90.29:0,90,1175 0/0:25,0:25:69.22:0,69,886 0/0:102,0:102:99:0,268,3444 0/0:18,0:18:48.15:0,48,617 0/0:25,0:25:66.21:0,66,860 0/0:34,0:34:96.31:0,96,1245 0/0:37,0:37:99:0,105,1360 0/0:35,0:35:96.30:0,96,1235 0/0:38,0:39:96.30:0,96,1259 0/0:27,0:27:75.24:0,75,977 0/0:55,0:55:99:0,150,2076 0/0:32,0:32:78.26:0,78,1094 0/0:53,0:53:99:0,138,1937 0/0:45,0:45:99:0,120,1673 0/0:20,0:20:60.19:0,60,761 0/0:33,0:33:93.30:0,93,1191 0/0:27,0:27:81.26:0,81,1030 0/0:33,0:33:90.29:0,90,1163 0/0:21,0:21:60.19:0,60,777 0/0:44,0:44:99:0,105,1379 0/0:28,0:28:78.25:0,78,1005 0/0:29,0:29:81.23:0,81,1041 0/0:35,0:35:99:0,99,1263 0/0:37,0:37:99:0,99,1298 0/0:23,0:23:63.19:0,63,797 0/0:30,0:32:81.26:0,81,1045 0/0:30,0:30:84.26:0,84,1061 0/0:24,0:24:66.21:0,66,859 0/0:30,0:30:81.26:0,81,1042 0/0:27,0:27:75.24:0,75,984 14 55243152 . C T 10204.13 . AC=5;AF=0.060;AN=84;BaseQRankSum=3.512;DP=5482;DS;Dels=0.00;FS=3.250;HRun=0;HaplotypeScore=6.1794;InbreedingCoeff=-0.0633;MQ=59.12;MQ0=0;MQRankSum=-0.429;QD=13.15;ReadPosRankSum=2.054 GT:AD:DP:GQ:PL 0/0:83,0:83:99:0,226,2599 0/0:84,0:88:99:0,241,2816 0/0:99,0:102:99:0,283,3333 0/0:183,0:186:99:0,511,6280 0/0:195,0:196:99:0,575,7254 0/0:172,0:175:99:0,484,5974 0/0:164,0:166:99:0,472,5876 0/0:180,0:182:99:0,493,6130 0/0:106,0:109:99:0,310,3601 0/0:88,0:88:99:0,238,2856 0/0:108,0:112:99:0,304,3539 0/0:96,0:97:99:0,274,3207 0/1:43,37:82:99:1006,0,1190 0/0:108,0:108:99:0,307,3610 0/0:182,0:184:99:0,514,5940 0/0:84,0:87:99:0,232,2705 0/0:103,0:103:99:0,295,3476 0/0:89,0:89:99:0,253,2973 0/0:184,0:187:99:0,508,5956 0/0:188,0:192:99:0,511,5950 0/0:209,1:211:99:0,581,6761 0/0:139,0:142:99:0,397,4702 0/0:192,0:192:99:0,542,6815 0/1:92,71:165:99:2156,0,2847 0/1:105,90:197:99:2748,0,3078 0/0:186,0:188:99:0,527,6597 0/0:83,0:84:99:0,244,2837 0/0:99,0:100:99:0,262,3070 0/0:99,0:100:99:0,271,3236 0/0:99,0:99:99:0,277,3325 0/0:91,0:91:99:0,253,2979 0/1:109,102:221:99:2759,0,2861 0/0:118,0:122:99:0,325,3848 0/0:91,0:91:99:0,241,2842 0/0:96,0:98:99:0,277,3236 0/0:88,0:88:99:0,253,2930 0/0:193,0:197:99:0,535,6286 0/0:88,0:89:99:0,256,2949 0/0:97,0:97:99:0,274,3241 0/0:94,0:97:99:0,268,3092 0/0:86,0:86:99:0,244,2855 0/1:54,56:111:99:1535,0,1563 14 55243209 . G A 11151.66 . AC=5;AF=0.060;AN=84;BaseQRankSum=-1.902;DP=6086;DS;Dels=0.00;FS=20.278;HRun=0;HaplotypeScore=4.6415;InbreedingCoeff=-0.0633;MQ=59.48;MQ0=0;MQRankSum=2.462;QD=13.62;ReadPosRankSum=0.732 GT:AD:DP:GQ:PL 0/0:86,0:86:99:0,235,2748 0/0:104,0:104:99:0,271,3268 0/0:78,0:78:99:0,220,2554 0/0:244,0:245:99:0,653,8129 0/0:248,0:249:99:0,656,8188 0/0:224,0:225:99:0,593,7474 0/0:209,0:209:99:0,548,6973 0/0:235,0:235:99:0,605,7626 0/0:114,1:115:99:0,310,3654 0/0:99,0:99:99:0,265,3148 0/0:94,0:95:99:0,259,3109 0/0:74,0:74:99:0,196,2351 0/1:34,36:71:99:987,0,891 0/0:120,0:121:99:0,328,3882 0/0:237,0:238:99:0,656,7748 0/0:77,0:79:99:0,211,2494 0/0:108,0:109:99:0,283,3363 0/0:84,0:84:99:0,232,2758 0/0:237,0:237:99:0,629,7465 0/0:237,0:238:99:0,617,7401 0/0:243,0:243:99:0,653,7743 0/0:152,0:152:99:0,421,4987 0/0:236,0:236:99:0,665,8249 0/1:111,105:217:99:2849,0,3106 0/1:114,102:216:99:2710,0,3225 0/0:193,0:194:99:0,508,6365 0/0:96,0:96:99:0,265,3202 0/0:96,0:96:99:0,274,3201 0/0:91,0:91:99:0,247,2930 0/0:93,1:94:99:0,225,3032 0/0:109,0:109:99:0,292,3540 0/1:102,122:224:99:3226,0,2678 0/0:135,0:135:99:0,370,4344 0/0:89,1:90:99:0,223,2866 0/0:98,0:98:99:0,271,3189 0/0:87,0:89:99:0,229,2694 0/0:226,0:227:99:0,620,7428 0/0:113,0:113:99:0,319,3748 0/0:112,0:113:99:0,304,3652 0/0:91,0:92:99:0,232,2709 0/0:79,0:79:99:0,205,2468 0/1:41,50:91:99:1380,0,1182 14 55462388 . G A 882.12 . 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G A 1513.57 . 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T G 2694.78 . 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A G 4268.05 . 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G A 3418.22 . 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C T 2078.66 . 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G T 50704.33 . 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C T 8676.47 . 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C T 6903.12 . 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T G 2530 . 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G A 8025.21 . 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C A 2780.94 . 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C T 2206.23 . AC=3;AF=0.036;AN=84;BaseQRankSum=0.507;DP=2130;Dels=0.00;FS=0.842;HRun=0;HaplotypeScore=0.8570;InbreedingCoeff=-0.0370;MQ=59.25;MQ0=0;MQRankSum=-0.682;QD=9.76;ReadPosRankSum=-0.711 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,102,1243 0/0:41,0:41:99:0,108,1287 0/0:46,0:46:99:0,117,1459 0/0:79,0:79:99:0,193,2591 0/0:73,0:73:99:0,178,2353 0/0:50,0:50:99:0,126,1693 0/0:51,0:51:99:0,126,1669 0/0:45,0:45:99:0,111,1501 0/0:48,0:48:99:0,126,1521 0/0:33,0:33:93.27:0,93,1123 0/0:40,0:40:99:0,105,1296 0/0:40,0:40:99:0,102,1256 0/0:46,0:46:99:0,117,1447 0/0:49,0:49:99:0,135,1643 0/1:88,55:144:99:1329,0,2373 0/1:16,9:25:99:237,0,487 0/0:49,0:49:99:0,120,1509 0/0:52,0:52:99:0,138,1739 0/0:79,0:79:99:0,202,2418 0/0:67,0:67:99:0,162,2004 0/0:74,0:74:99:0,181,2220 0/0:34,0:34:87.26:0,87,1081 0/0:73,0:73:99:0,178,2384 0/0:44,0:44:99:0,117,1523 0/0:38,0:38:99:0,102,1366 0/0:42,0:42:99:0,105,1375 0/0:36,0:37:93.29:0,93,1177 0/0:48,0:48:99:0,132,1589 0/0:44,0:44:99:0,123,1508 0/0:40,0:40:96.28:0,96,1210 0/0:51,0:51:99:0,135,1684 0/1:31,26:57:99:716,0,858 0/0:55,0:55:99:0,144,1758 0/0:36,0:36:99:0,99,1251 0/0:42,0:43:99:0,114,1411 0/0:53,0:53:99:0,132,1658 0/0:65,0:65:99:0,162,1971 0/0:41,0:41:99:0,117,1387 0/0:37,0:37:99:0,102,1264 0/0:45,0:45:99:0,120,1497 0/0:39,0:39:99:0,108,1299 0/0:39,0:39:99:0,105,1245 14 59946011 . A C 240.04 . 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A G 186163.16 . AC=84;AF=1.000;AN=84;BaseQRankSum=-1.055;DP=5763;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.1700;InbreedingCoeff=0.0000;MQ=59.53;MQ0=0;MQRankSum=-1.717;QD=32.30;ReadPosRankSum=0.349 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3350,286,0 1/1:0,110:110:99:3541,298,0 1/1:0,101:101:99:3228,271,0 1/1:0,244:244:99:7780,593,0 1/1:0,224:225:99:7440,566,0 1/1:0,174:174:99:5993,460,0 1/1:0,181:181:99:6081,460,0 1/1:0,185:185:99:6378,488,0 1/1:0,118:118:99:3697,310,0 1/1:0,96:96:99:2905,238,0 1/1:0,99:99:99:3164,268,0 1/1:0,83:83:99:2770,238,0 1/1:0,107:107:99:3591,307,0 1/1:0,88:88:99:2662,220,0 1/1:1,246:247:99:7830,665,0 1/1:0,72:72:99:2412,205,0 1/1:0,105:106:99:3370,286,0 1/1:0,101:101:99:3142,262,0 1/1:2,200:203:99:6129,470,0 1/1:0,177:178:99:5406,442,0 1/1:0,201:201:99:6194,499,0 1/1:0,107:107:99:3399,289,0 1/1:0,240:240:99:8355,638,0 1/1:0,194:195:99:6247,469,0 1/1:0,164:164:99:5743,442,0 1/1:0,194:194:99:6439,491,0 1/1:0,85:85:99:2689,229,0 1/1:0,106:107:99:3297,283,0 1/1:0,87:87:99:2828,235,0 1/1:0,105:105:99:3387,286,0 1/1:0,108:108:99:3602,301,0 1/1:0,193:195:99:5958,487,0 1/1:0,137:137:99:4327,364,0 1/1:0,119:119:99:3865,331,0 1/1:0,89:89:99:3009,253,0 1/1:0,106:106:99:3415,289,0 1/1:0,167:167:99:5291,448,0 1/1:0,121:121:99:3889,328,0 1/1:0,94:94:99:3063,256,0 1/1:0,97:97:99:3186,271,0 1/1:0,99:99:99:3248,277,0 1/1:0,118:118:99:3862,322,0 14 60074109 . C T 600.95 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.239;DP=1216;Dels=0.00;FS=20.861;HRun=0;HaplotypeScore=0.8765;InbreedingCoeff=-0.0244;MQ=58.70;MQ0=0;MQRankSum=0.310;QD=12.52;ReadPosRankSum=-1.181 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,120,1346 0/0:36,0:36:99:0,99,1126 0/0:13,0:13:33.08:0,33,390 0/0:46,0:46:99:0,120,1473 0/0:34,0:34:99:0,102,1170 0/0:23,0:23:69.18:0,69,795 0/0:25,0:25:75.21:0,75,886 0/0:22,0:22:60.18:0,60,730 0/0:29,0:29:87.24:0,87,985 0/0:14,0:14:39.11:0,39,447 0/0:26,0:26:75.20:0,75,851 0/0:29,0:29:81.21:0,81,913 0/0:24,0:24:69.17:0,69,749 0/0:36,0:36:99:0,102,1138 0/0:74,0:74:99:0,195,2241 0/0:21,0:21:63.15:0,63,707 0/0:25,0:25:72.15:0,72,783 0/0:30,0:30:84.18:0,84,920 0/0:29,0:29:81.18:0,81,859 0/0:45,0:45:99:0,117,1356 0/0:37,0:37:96.21:0,96,1054 0/0:31,0:31:81.20:0,81,924 0/0:54,0:54:99:0,156,1852 0/0:15,0:15:45.14:0,45,556 0/0:21,0:21:54.17:0,54,684 0/0:25,0:25:75.20:0,75,886 0/1:12,9:21:99:258,0,306 0/0:23,0:23:66.15:0,66,730 0/1:13,14:27:99:406,0,348 0/0:17,0:17:51.14:0,51,570 0/0:21,0:21:60.15:0,60,660 0/0:58,0:58:99:0,159,1842 0/0:23,0:23:66.16:0,66,726 0/0:23,0:23:66.18:0,66,741 0/0:24,0:24:66.18:0,66,761 0/0:14,0:14:39.10:0,39,440 0/0:44,0:45:99:0,120,1322 0/0:29,0:29:81.18:0,81,910 0/0:23,0:23:69.16:0,69,761 0/0:18,0:18:51.13:0,51,578 0/0:16,0:16:39.10:0,39,450 0/0:27,0:27:75.20:0,75,850 14 60592395 . C CTAT 936.56 . AC=3;AF=0.036;AN=84;BaseQRankSum=-4.578;DP=831;FS=4.802;HRun=0;HaplotypeScore=68.2951;InbreedingCoeff=-0.0371;MQ=58.96;MQ0=0;MQRankSum=-1.907;QD=24.65;ReadPosRankSum=-1.151 GT:AD:DP:GQ:PL 0/0:19,0:19:54.17:0,54,977 0/0:18,0:18:54.19:0,54,996 0/0:20,0:20:54.18:0,54,960 0/0:23,0:23:69.24:0,69,1276 0/0:23,0:23:63.22:0,63,1170 0/0:20,0:20:60.20:0,60,1096 0/0:24,0:24:69.23:0,69,1257 0/0:20,0:20:60.21:0,60,1119 0/0:22,0:22:66.23:0,66,1231 0/0:10,0:10:27.08:0,27,474 0/0:14,0:14:39.13:0,39,728 0/0:17,0:17:51.17:0,51,940 0/0:18,0:18:51.17:0,51,926 0/0:16,0:16:48.16:0,48,871 0/0:38,0:38:99:0,108,1936 0/0:12,0:12:36.12:0,36,672 0/0:18,0:18:51.17:0,51,925 0/0:10,0:10:30.10:0,30,560 0/0:30,0:30:87.27:0,87,1537 0/0:43,0:43:99:0,129,2341 0/0:25,0:25:75.25:0,75,1369 0/0:23,0:23:69.24:0,69,1276 0/0:23,0:23:69.23:0,69,1253 0/1:5,1:7:77.78:78,0,259 0/0:15,0:15:42.14:0,42,783 0/1:11,2:13:99:257,0,411 0/0:10,0:10:30.10:0,30,560 0/1:12,6:18:99:686,0,361 0/0:16,0:16:45.15:0,45,839 0/0:14,0:14:39.13:0,39,701 0/0:10,0:10:30.10:0,30,532 0/0:28,0:28:81.28:0,81,1511 0/0:25,0:25:75.25:0,75,1353 0/0:21,0:21:63.21:0,63,1147 0/0:19,0:19:54.17:0,54,924 0/0:21,0:21:63.21:0,63,1127 0/0:36,0:36:99:0,108,1979 0/0:35,0:35:99:0,102,1856 0/0:12,0:12:33.11:0,33,590 0/0:20,0:20:57.20:0,57,1049 0/0:11,0:11:27.09:0,27,492 0/0:14,0:14:42.14:0,42,783 14 60938319 . T C 378.81 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.922;DP=1894;Dels=0.00;FS=1.077;HRun=0;HaplotypeScore=0.7478;InbreedingCoeff=-0.0120;MQ=59.51;MQ0=0;MQRankSum=0.169;QD=10.82;ReadPosRankSum=-0.520 GT:AD:DP:GQ:PL 0/0:33,0:33:87.26:0,87,1075 0/0:50,0:50:99:0,123,1549 0/0:40,0:40:99:0,117,1383 0/0:71,0:71:99:0,175,2216 0/0:41,0:41:99:0,114,1429 0/0:73,0:73:99:0,181,2369 0/0:83,0:83:99:0,214,2730 0/0:70,0:70:99:0,163,2073 0/0:42,0:42:99:0,117,1405 0/0:35,0:35:93.29:0,93,1149 0/1:19,16:35:99:425,0,500 0/0:34,0:34:96.30:0,96,1181 0/0:36,0:36:93.27:0,93,1143 0/0:35,0:35:93.29:0,93,1155 0/0:138,0:138:99:0,343,4267 0/0:25,0:25:66.20:0,66,815 0/0:40,0:40:99:0,102,1276 0/0:33,0:33:93.28:0,93,1121 0/0:36,0:36:99:0,99,1209 0/0:28,0:28:75.23:0,75,928 0/0:42,0:42:99:0,114,1402 0/0:36,0:36:90.28:0,90,1121 0/0:56,0:56:99:0,144,1825 0/0:66,0:66:99:0,166,2106 0/0:60,0:60:99:0,138,1794 0/0:55,0:55:99:0,141,1807 0/0:25,0:25:66.21:0,66,823 0/0:67,0:67:99:0,181,2210 0/0:29,0:29:75.23:0,75,912 0/0:41,0:41:99:0,108,1340 0/0:38,0:38:99:0,105,1286 0/0:47,0:47:99:0,129,1599 0/0:28,0:28:78.24:0,78,939 0/0:31,0:31:81.24:0,81,981 0/0:30,0:30:81.25:0,81,992 0/0:38,0:38:99:0,105,1287 0/0:37,0:37:99:0,108,1295 0/0:46,0:46:99:0,123,1501 0/0:29,0:29:81.25:0,81,985 0/0:38,0:38:96.30:0,96,1204 0/0:35,0:35:90.28:0,90,1116 0/0:42,0:42:99:0,111,1356 14 61909847 . G A 1321 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.451;DP=3371;Dels=0.00;FS=2.439;HRun=0;HaplotypeScore=0.8128;InbreedingCoeff=-0.0244;MQ=59.39;MQ0=0;MQRankSum=0.834;QD=9.86;ReadPosRankSum=1.937 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,168,1972 0/0:83,0:83:99:0,223,2606 0/0:63,0:63:99:0,153,1841 0/0:132,0:132:99:0,361,4467 0/0:122,1:123:99:0,281,3970 0/0:127,0:127:99:0,343,4341 0/0:104,0:105:99:0,277,3475 0/0:108,0:108:99:0,277,3584 0/0:61,0:61:99:0,159,1867 0/0:53,0:53:99:0,150,1750 0/0:53,0:54:99:0,147,1688 0/0:76,0:76:99:0,208,2369 0/0:59,0:59:99:0,165,1936 0/0:64,0:65:99:0,177,2041 0/0:230,0:231:99:0,590,6959 0/0:64,0:64:99:0,177,2020 0/0:61,0:61:99:0,171,1963 0/0:69,0:69:99:0,190,2208 0/0:83,0:83:99:0,229,2652 0/0:84,0:84:99:0,235,2694 0/0:109,0:109:99:0,292,3452 0/0:47,0:47:99:0,129,1518 0/0:139,0:139:99:0,361,4699 0/0:94,2:96:99:0,205,3107 0/0:101,0:101:99:0,262,3309 0/0:88,0:88:99:0,232,2955 0/0:45,0:45:99:0,120,1396 0/0:63,0:63:99:0,168,1985 0/0:61,0:61:99:0,153,1828 0/0:60,0:60:99:0,168,1973 0/0:62,0:62:99:0,177,2034 0/0:74,0:74:99:0,205,2345 0/0:67,0:67:99:0,171,2064 0/0:64,0:64:99:0,177,2054 0/0:67,1:68:99:0,178,2097 0/0:68,0:68:99:0,196,2229 0/1:46,25:71:99:620,0,1176 0/1:36,27:63:99:763,0,979 0/0:60,1:61:99:0,165,1903 0/0:60,0:60:99:0,165,1949 0/0:60,0:60:99:0,171,1976 0/0:75,0:75:99:0,208,2374 14 62245592 . G A 1739.04 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.058;DP=3176;Dels=0.00;FS=7.137;HRun=4;HaplotypeScore=0.6688;InbreedingCoeff=-0.0244;MQ=59.54;MQ0=0;MQRankSum=0.676;QD=9.20;ReadPosRankSum=1.878 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,135,1621 0/0:81,0:81:99:0,214,2581 0/0:63,0:63:99:0,175,2095 0/0:86,0:86:99:0,211,2745 0/0:104,0:104:99:0,262,3448 0/0:82,0:82:99:0,214,2766 0/0:92,0:92:99:0,223,2936 0/0:87,0:87:99:0,217,2843 0/0:60,0:60:99:0,150,1826 0/0:65,0:65:99:0,171,2045 0/0:70,0:70:99:0,190,2297 0/0:69,0:69:99:0,187,2215 0/0:65,0:65:99:0,175,2118 0/0:45,0:45:99:0,120,1457 0/0:219,0:219:99:0,542,6696 0/0:45,0:45:99:0,117,1387 0/0:64,0:64:99:0,178,2132 0/0:63,0:63:99:0,172,2085 0/1:48,40:88:99:982,0,1376 0/1:67,34:101:99:819,0,1784 0/0:92,0:92:99:0,217,2685 0/0:54,0:54:99:0,126,1556 0/0:102,0:102:99:0,247,3258 0/0:86,0:86:99:0,208,2704 0/0:95,0:95:99:0,238,3128 0/0:75,0:75:99:0,193,2487 0/0:49,0:49:99:0,123,1507 0/0:62,0:62:99:0,153,1849 0/0:56,0:56:99:0,153,1854 0/0:77,0:77:99:0,184,2263 0/0:59,1:60:99:0,114,1752 0/0:90,1:91:99:0,226,2787 0/0:60,0:60:99:0,162,1970 0/0:70,0:70:99:0,187,2255 0/0:67,0:67:99:0,162,2024 0/0:63,0:63:99:0,177,2072 0/0:91,0:91:99:0,220,2634 0/0:78,0:78:99:0,193,2304 0/0:55,0:55:99:0,153,1826 0/0:72,0:72:99:0,193,2351 0/0:75,0:75:99:0,205,2424 0/0:47,0:47:99:0,117,1449 14 62245617 . G C 1738.42 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.212;DP=2915;Dels=0.00;FS=0.991;HRun=0;HaplotypeScore=0.9251;InbreedingCoeff=-0.0244;MQ=59.60;MQ0=0;MQRankSum=-1.893;QD=10.54;ReadPosRankSum=0.236 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,123,1580 0/0:65,0:65:99:0,181,2252 0/0:62,0:62:99:0,156,2002 0/0:92,0:92:99:0,220,3007 0/0:97,0:98:99:0,247,3392 0/0:80,0:80:99:0,205,2809 0/0:89,0:89:99:0,220,2998 0/0:81,0:81:99:0,205,2738 0/0:53,0:53:99:0,135,1753 0/0:65,0:65:99:0,169,2145 0/0:59,0:59:99:0,163,2064 0/0:66,0:66:99:0,175,2227 0/0:66,0:66:99:0,169,2171 0/0:40,0:40:99:0,108,1360 0/0:202,0:202:99:0,482,6292 0/0:51,0:51:99:0,135,1711 0/0:54,0:54:99:0,144,1824 0/0:56,0:56:99:0,153,1933 0/1:42,39:81:99:1016,0,1167 0/1:52,32:84:99:784,0,1499 0/0:82,0:82:99:0,196,2510 0/0:51,0:51:99:0,117,1533 0/0:94,0:94:99:0,229,3148 0/0:76,0:76:99:0,190,2572 0/0:85,0:85:99:0,226,3069 0/0:78,0:78:99:0,196,2680 0/0:40,0:40:99:0,105,1328 0/0:59,0:59:99:0,144,1850 0/0:50,0:50:99:0,135,1718 0/0:70,0:70:99:0,178,2238 0/0:56,0:56:99:0,147,1890 0/0:87,0:87:99:0,199,2631 0/0:48,0:48:99:0,129,1633 0/0:66,0:66:99:0,169,2127 0/0:61,0:61:99:0,156,1986 0/0:68,0:68:99:0,159,2056 0/0:75,0:75:99:0,187,2386 0/0:71,0:71:99:0,184,2337 0/0:45,0:45:99:0,120,1526 0/0:63,0:63:99:0,160,2041 0/0:60,0:60:99:0,159,2009 0/0:39,0:39:99:0,111,1399 14 63842813 . C G 750.01 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.126;DP=2435;DS;Dels=0.00;FS=1.949;HRun=0;HaplotypeScore=0.4581;InbreedingCoeff=-0.0244;MQ=59.44;MQ0=0;MQRankSum=0.542;QD=10.00;ReadPosRankSum=-2.026 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,99,1272 0/0:37,0:37:99:0,102,1307 0/0:34,0:34:96.31:0,96,1232 0/0:119,0:119:99:0,313,4300 0/0:107,0:107:99:0,295,4096 0/0:126,0:126:99:0,361,4872 0/0:107,0:107:99:0,292,3996 0/0:113,0:113:99:0,307,4147 0/1:24,22:46:99:631,0,710 0/0:41,0:41:99:0,114,1455 0/1:21,8:29:99:181,0,726 0/0:30,0:30:87.27:0,87,1096 0/0:37,0:37:99:0,102,1317 0/0:62,0:63:99:0,175,2266 0/0:183,0:184:99:0,463,6109 0/0:27,0:27:72.23:0,72,932 0/0:36,0:36:99:0,99,1254 0/0:42,0:42:99:0,117,1500 0/0:52,0:52:99:0,147,1901 0/0:28,0:29:72.23:0,72,949 0/0:54,0:54:99:0,135,1744 0/0:17,0:17:48.16:0,48,629 0/0:135,0:136:99:0,382,5260 0/0:106,0:106:99:0,301,4124 0/0:119,0:119:99:0,337,4665 0/0:112,0:112:99:0,301,4141 0/0:23,0:23:69.22:0,69,872 0/0:54,0:54:99:0,138,1781 0/0:35,0:35:99:0,102,1303 0/0:38,0:38:99:0,111,1421 0/0:36,0:36:93.30:0,93,1224 0/0:45,0:45:99:0,111,1460 0/0:34,0:34:93.30:0,93,1195 0/0:45,0:45:99:0,123,1600 0/0:35,0:35:96.29:0,96,1215 0/0:44,0:44:99:0,123,1579 0/0:30,0:30:90.28:0,90,1137 0/0:41,0:41:99:0,105,1329 0/0:39,0:39:99:0,108,1391 0/0:38,0:38:99:0,111,1423 0/0:26,0:26:72.23:0,72,932 0/0:33,0:33:93.30:0,93,1207 14 64408645 . A G 1430.27 . 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G C 4854.85 . 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A AC 111.44 . AC=5;AF=0.060;AN=84;BaseQRankSum=9.234;DP=1807;FS=1287.043;HRun=2;HaplotypeScore=140.5698;InbreedingCoeff=-0.0758;MQ=59.10;MQ0=0;MQRankSum=1.222;QD=0.48;ReadPosRankSum=-15.814 GT:AD:DP:GQ:PL 0/0:45,0:44:35.41:0,35,1053 0/0:31,0:31:75.23:0,75,924 0/0:31,0:31:10.58:0,11,658 0/0:72,0:72:83.93:0,84,1774 0/1:58,0:58:95.50:96,0,1207 0/0:64,0:64:99:0,144,1781 0/1:53,0:52:15.46:15,0,1062 0/0:60,0:60:99:0,109,1601 0/0:32,0:32:48.24:0,48,835 0/0:29,0:28:60.18:0,60,744 0/0:24,0:24:54.16:0,54,648 0/1:46,0:46:50.85:51,0,1069 0/0:45,0:45:75.28:0,75,1057 0/0:39,0:39:17.66:0,18,955 0/0:130,0:130:32.25:0,32,3142 0/0:28,0:28:60.18:0,60,730 0/0:30,0:30:1.50:0,2,600 0/0:28,0:28:54.25:0,54,702 0/0:48,0:48:46.44:0,46,1101 0/0:49,0:49:36.56:0,37,1122 0/1:45,0:45:39.03:39,0,969 0/0:19,0:19:36.11:0,36,447 0/0:69,0:69:26.86:0,27,1412 0/0:45,0:45:99:0,101,1254 0/0:48,0:47:56.69:0,57,1065 0/0:33,10:43:84.26:0,84,1036 0/0:24,0:24:19.59:0,20,598 0/0:50,0:50:14.10:0,14,1134 0/0:47,1:48:68.47:0,68,1153 0/0:31,0:31:25.32:0,25,832 0/0:35,0:35:59.30:0,59,973 0/0:40,0:40:51.35:0,51,892 0/0:42,0:42:32.65:0,33,984 0/0:33,0:33:25.64:0,26,925 0/1:30,0:30:12.47:12,0,707 0/0:43,0:43:24.41:0,24,839 0/0:43,0:43:19.81:0,20,1139 0/0:30,0:30:72.22:0,72,893 0/0:28,0:27:75.23:0,75,930 0/0:32,0:32:41.57:0,42,844 0/0:50,0:50:33.94:0,34,1181 0/0:37,0:37:1.44:0,1,799 14 64560091 . T C 7562.67 . 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G A 7397.32 . AC=7;AF=0.083;AN=84;BaseQRankSum=-17.893;DP=3536;Dels=0.00;FS=5.295;HRun=0;HaplotypeScore=1.0035;InbreedingCoeff=-0.0909;MQ=59.22;MQ0=0;MQRankSum=1.106;QD=14.85;ReadPosRankSum=-0.712 GT:AD:DP:GQ:PL 0/0:70,0:70:99:0,199,2558 0/0:64,0:65:99:0,187,2365 0/1:26,21:47:99:640,0,781 0/0:136,0:136:99:0,397,5353 0/0:131,0:131:99:0,379,5259 0/0:149,0:149:99:0,436,5987 0/0:144,0:144:99:0,418,5763 0/0:125,0:125:99:0,364,4985 0/1:31,33:64:99:993,0,1007 0/1:25,35:60:99:1045,0,725 0/0:60,0:60:99:0,178,2236 0/0:66,0:66:99:0,187,2366 0/0:70,0:71:99:0,196,2501 0/0:47,0:47:99:0,138,1740 0/0:220,0:222:99:0,620,7950 0/0:52,0:52:99:0,156,1979 0/0:60,0:60:99:0,178,2251 0/0:57,0:57:99:0,169,2145 0/0:89,0:89:99:0,250,3188 0/0:92,0:92:99:0,265,3390 0/0:86,0:86:99:0,244,3097 0/0:54,0:54:99:0,156,1985 0/1:82,73:155:99:2214,0,2694 0/0:134,0:134:99:0,379,5180 0/0:132,0:132:99:0,385,5235 0/0:147,0:148:99:0,427,5819 0/1:24,18:43:99:547,0,718 0/0:63,0:63:99:0,190,2360 0/1:32,23:55:99:653,0,1009 0/0:64,0:64:99:0,181,2308 0/0:55,0:55:99:0,156,2004 0/1:33,41:74:99:1307,0,967 0/0:36,0:36:99:0,108,1391 0/0:70,0:70:99:0,205,2594 0/0:73,0:73:99:0,214,2704 0/0:66,0:66:99:0,190,2415 0/0:92,0:92:99:0,265,3351 0/0:74,0:74:99:0,205,2618 0/0:60,0:60:99:0,178,2257 0/0:57,0:58:99:0,169,2138 0/0:63,1:64:99:0,158,2374 0/0:72,0:73:99:0,211,2673 14 64565536 . C T 695.91 . 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T C 3025.58 . AC=2;AF=0.024;AN=84;BaseQRankSum=13.711;DP=3316;Dels=0.00;FS=0.751;HRun=0;HaplotypeScore=1.7608;InbreedingCoeff=-0.0244;MQ=59.20;MQ0=0;MQRankSum=2.637;QD=16.01;ReadPosRankSum=0.973 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,132,1608 0/0:57,0:57:99:0,147,1823 0/0:67,0:67:99:0,181,2181 0/0:144,0:145:99:0,346,4402 0/0:141,0:141:99:0,358,4530 0/0:112,0:112:99:0,283,3662 0/0:88,0:88:99:0,244,3094 0/0:93,0:94:99:0,238,3013 0/0:53,0:53:99:0,144,1778 0/0:46,0:46:99:0,132,1585 0/0:65,0:65:99:0,175,2130 0/0:56,0:56:99:0,153,1850 0/0:55,0:55:99:0,138,1713 0/0:52,0:53:99:0,144,1771 0/0:221,0:221:99:0,557,6877 0/0:40,0:40:99:0,117,1383 0/0:55,0:55:99:0,153,1853 0/0:53,0:53:99:0,147,1771 0/0:112,0:112:99:0,304,3691 0/0:114,0:114:99:0,271,3450 0/0:103,0:104:99:0,259,3201 0/0:85,0:85:99:0,220,2692 0/0:131,0:131:99:0,331,4164 0/1:46,47:93:99:1430,0,1311 0/1:39,57:96:99:1658,0,1097 0/0:99,0:99:99:0,256,3208 0/0:48,0:48:99:0,123,1525 0/0:59,0:59:99:0,156,1924 0/0:63,0:63:99:0,178,2127 0/0:55,0:55:99:0,138,1711 0/0:42,0:42:99:0,111,1369 0/0:108,0:108:99:0,277,3433 0/0:59,0:59:99:0,159,1966 0/0:66,0:67:99:0,175,2150 0/0:65,0:65:99:0,178,2162 0/0:60,0:60:99:0,162,1978 0/0:96,0:97:99:0,259,3145 0/0:65,0:65:99:0,166,2063 0/0:62,0:62:99:0,165,2022 0/0:60,0:60:99:0,169,2045 0/0:55,0:55:99:0,150,1845 0/0:66,0:66:99:0,175,2155 14 64612845 . C T 13629.73 . 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C A 23295.73 . 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T C 1771.81 . 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C A 9030.31 . 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C T 4728.47 . 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A C 7612.23 . 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T C 4398.82 . 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C T 3938.87 . 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C T 2583.45 . 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T C 1327.49 . 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G A 3716.94 . 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A G 176.71 . 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A C 5964.25 . AC=17;AF=0.202;AN=84;BaseQRankSum=-54.645;DP=8562;DS;Dels=0.00;FS=3200.000;HRun=3;HaplotypeScore=10.6182;InbreedingCoeff=-0.2538;MQ=59.20;MQ0=0;MQRankSum=0.346;QD=1.61;ReadPosRankSum=-34.516 GT:AD:DP:GQ:PL 0/1:101,66:168:95.36:95,0,2761 0/0:117,66:185:99:0,201,3772 0/1:116,61:178:29.65:30,0,3285 0/1:91,158:250:99:778,0,2510 0/1:97,152:250:99:423,0,2674 0/1:113,136:250:99:358,0,3137 0/0:195,54:250:99:0,463,6221 0/1:136,112:250:62.76:63,0,3914 0/0:123,52:175:97.49:0,97,3569 0/1:95,48:145:99:101,0,2905 0/0:122,62:184:53.80:0,54,3566 0/0:103,79:183:16.45:0,16,3135 0/1:108,52:161:18.05:18,0,3181 0/0:139,62:205:94.69:0,95,4224 0/1:97,151:250:99:775,0,2618 0/1:122,61:186:9.89:10,0,3686 0/0:104,67:171:5.50:0,5,3120 0/0:106,53:160:99:0,128,3216 0/1:118,129:250:99:970,0,3004 0/0:146,99:250:99:0,106,4328 0/1:136,112:250:99:561,0,3585 0/0:157,92:250:99:0,255,4899 0/1:80,170:250:99:769,0,2020 0/0:156,93:250:99:0,161,4872 0/1:123,126:250:99:139,0,3632 0/0:156,92:250:60.37:0,60,4675 0/0:101,47:148:99:0,152,3161 0/0:117,63:182:48.55:0,49,3544 0/0:101,51:152:95.76:0,96,3188 0/0:100,49:153:83.43:0,83,2842 0/0:118,61:180:66.68:0,67,3636 0/0:138,112:250:67.37:0,67,3983 0/0:153,96:250:73.51:0,74,4355 0/0:121,64:186:20.13:0,20,3688 0/0:127,66:193:99:0,117,3909 0/1:114,63:177:7.83:8,0,3479 0/1:133,115:250:99:761,0,3612 0/0:116,65:184:99:0,145,3656 0/0:127,24:151:99:0,225,4029 0/1:124,65:189:99:107,0,3838 0/0:96,40:139:32.29:0,32,2825 0/0:144,33:177:99:0,293,4662 14 65417070 . C A 7628.30 . AC=3;AF=0.036;AN=84;BaseQRankSum=-15.490;DP=8674;DS;Dels=0.00;FS=16.718;HRun=0;HaplotypeScore=14.7176;InbreedingCoeff=-0.0370;MQ=59.14;MQ0=0;MQRankSum=1.725;QD=13.34;ReadPosRankSum=4.873 GT:AD:DP:GQ:PL 0/0:177,0:177:99:0,448,5716 0/0:190,0:190:99:0,500,6295 0/0:184,0:184:99:0,475,5944 0/0:250,0:250:99:0,713,9462 0/0:250,0:250:99:0,680,9114 0/0:250,0:250:99:0,671,8999 0/1:126,114:240:99:3191,0,3668 0/0:250,0:250:99:0,659,8788 0/0:182,0:182:99:0,475,6027 0/0:153,0:153:99:0,409,5163 0/0:193,0:193:99:0,518,6577 0/0:192,0:192:99:0,512,6451 0/0:165,0:165:99:0,442,5594 0/0:198,0:198:99:0,490,6187 0/0:249,1:250:99:0,677,8225 0/0:201,0:202:99:0,548,6916 0/0:181,0:181:99:0,488,6173 0/0:160,2:162:99:0,386,5369 0/0:250,0:250:99:0,665,8173 0/0:250,0:250:99:0,692,8706 0/0:248,2:250:99:0,644,7854 0/0:245,0:245:99:0,650,8266 0/0:250,0:250:99:0,707,9384 0/0:247,0:248:99:0,617,8307 0/0:248,0:248:99:0,659,8912 0/0:250,0:250:99:0,656,8760 0/0:159,0:160:99:0,427,5377 0/0:180,2:182:99:0,466,5860 0/0:166,0:166:99:0,424,5439 0/0:155,0:155:99:0,400,5087 0/0:186,0:186:99:0,515,6518 0/0:250,0:250:99:0,683,8725 0/0:245,0:245:99:0,650,8247 0/0:190,0:191:99:0,479,6174 0/0:196,0:196:99:0,518,6474 0/0:178,0:178:99:0,482,6152 0/0:249,1:250:99:0,638,7915 0/0:187,0:187:99:0,503,6347 0/1:76,69:145:99:1884,0,2287 0/0:194,0:194:99:0,515,6432 0/0:142,0:142:99:0,379,4737 0/1:92,95:187:99:2554,0,2688 14 65511121 . G A 4672.65 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.841;DP=4469;DS;Dels=0.00;FS=16.355;HRun=0;HaplotypeScore=5.8030;InbreedingCoeff=-0.0244;MQ=59.17;MQ0=1;MQRankSum=-0.293;QD=11.95;ReadPosRankSum=3.697 GT:AD:DP:GQ:PL 0/0:72,0:72:99:0,183,2167 0/0:68,0:68:99:0,186,2182 0/0:49,0:49:99:0,138,1681 0/1:107,109:217:99:3032,0,2932 0/1:107,66:174:99:1641,0,3229 0/0:145,0:145:99:0,403,5010 0/0:120,0:120:99:0,325,4069 0/0:158,0:160:99:0,421,5308 0/0:87,0:87:99:0,244,2888 0/0:73,0:74:99:0,196,2355 0/0:65,0:65:99:0,187,2217 0/0:64,0:64:99:0,180,2118 0/0:46,0:46:99:0,114,1397 0/0:90,0:91:99:0,244,2892 0/0:210,0:212:99:0,599,7159 0/0:87,1:88:99:0,244,2891 0/0:87,0:87:99:0,253,3052 0/0:71,0:71:99:0,196,2396 0/0:172,0:174:99:0,421,5033 0/0:184,0:184:99:0,496,6051 0/0:152,2:157:99:0,369,4796 0/0:93,0:93:99:0,268,3167 0/0:220,0:220:99:0,590,7395 0/0:145,0:145:99:0,400,5082 0/0:141,0:141:99:0,382,4799 0/0:146,0:146:99:0,406,5061 0/0:53,0:53:99:0,153,1869 0/0:80,0:81:99:0,223,2681 0/0:67,0:67:99:0,190,2296 0/0:77,0:77:99:0,199,2409 0/0:75,0:76:99:0,223,2632 0/0:170,1:172:99:0,448,5776 0/0:100,0:100:99:0,280,3402 0/0:75,0:75:99:0,199,2351 0/0:74,0:74:99:0,202,2361 0/0:56,0:56:99:0,156,1901 0/0:128,0:130:99:0,337,4008 0/0:72,0:72:99:0,193,2273 0/0:76,0:76:99:0,217,2541 0/0:75,0:76:99:0,205,2490 0/0:62,0:62:99:0,183,2166 0/0:72,0:72:99:0,199,2378 14 66028446 . A G 51700.99 . 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C A 11383.55 . 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T G 1364.26 . 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A G 1398.74 . 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C T 1513.49 . 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C A 435.86 . 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G T 17600 . 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A T 6.41 . 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A G 873.35 . 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G A 203.28 . 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A G 405.70 . 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A T 12318.44 . AC=19;AF=0.226;AN=84;BaseQRankSum=-6.268;DP=2354;Dels=0.00;FS=15.158;HRun=0;HaplotypeScore=1.6599;InbreedingCoeff=-0.0202;MQ=59.32;MQ0=0;MQRankSum=-0.898;QD=15.26;ReadPosRankSum=-0.827 GT:AD:DP:GQ:PL 0/0:34,0:34:93.29:0,93,1160 0/1:24,20:44:99:582,0,726 0/1:15,23:38:99:690,0,394 0/0:123,0:123:99:0,319,4132 0/0:90,0:90:99:0,250,3220 0/0:91,0:91:99:0,250,3240 0/0:67,0:67:99:0,187,2398 0/1:26,31:57:99:857,0,768 0/0:33,0:33:90.28:0,90,1119 0/1:8,11:19:99:305,0,240 0/0:52,0:52:99:0,138,1764 0/1:27,20:47:99:517,0,788 0/1:20,13:33:99:345,0,614 0/1:20,18:38:99:510,0,626 0/0:131,0:131:99:0,349,4349 0/0:35,0:35:93.29:0,93,1165 0/0:42,0:42:99:0,111,1417 0/0:48,0:48:99:0,123,1536 0/0:58,0:58:99:0,159,1975 0/0:94,0:94:99:0,265,3309 1/1:0,71:72:99:2443,196,0 0/1:29,24:53:99:672,0,816 0/0:126,0:126:99:0,322,4138 0/1:37,17:54:99:458,0,1154 1/1:0,48:48:99:1555,123,0 0/0:64,0:64:99:0,159,2086 0/0:45,0:45:99:0,129,1588 0/0:42,0:42:99:0,123,1536 0/0:39,0:39:99:0,99,1279 0/1:19,23:42:99:701,0,528 0/0:40,0:40:99:0,117,1459 0/1:53,28:81:99:701,0,1674 0/1:33,23:56:99:611,0,915 0/0:51,0:51:99:0,144,1779 0/0:45,0:45:99:0,126,1548 0/1:29,20:49:99:573,0,895 0/0:80,0:80:99:0,214,2668 0/0:39,0:39:99:0,108,1334 0/0:38,0:39:99:0,108,1362 0/1:20,13:33:99:360,0,599 0/0:39,0:39:99:0,111,1375 0/1:27,16:43:99:439,0,775 14 68035879 . A G 19693.65 . AC=26;AF=0.310;AN=84;BaseQRankSum=-8.112;DP=2295;Dels=0.00;FS=1.300;HRun=0;HaplotypeScore=1.4580;InbreedingCoeff=-0.0027;MQ=59.31;MQ0=0;MQRankSum=1.008;QD=16.34;ReadPosRankSum=-2.082 GT:AD:DP:GQ:PL 0/0:34,0:34:87.27:0,87,1078 0/0:43,0:43:99:0,117,1420 0/0:52,0:52:99:0,138,1670 0/1:40,44:84:99:1157,0,954 0/1:40,35:75:99:1048,0,1061 0/1:36,36:72:99:948,0,965 0/1:24,24:48:99:702,0,703 0/0:76,0:76:99:0,202,2519 0/1:28,24:52:99:598,0,741 0/0:43,0:44:99:0,117,1414 1/1:0,26:26:69.18:801,69,0 0/1:21,13:34:99:335,0,606 0/0:24,0:24:66.20:0,66,798 0/1:14,22:36:99:573,0,396 1/1:0,127:127:99:3754,316,0 0/1:18,20:38:99:490,0,515 1/1:0,43:43:99:1338,120,0 0/1:13,23:36:99:556,0,332 0/1:55,47:102:99:1166,0,1428 0/0:80,0:80:99:0,208,2563 0/0:90,0:90:99:0,235,2817 0/0:51,0:51:99:0,141,1699 0/1:58,40:98:99:1013,0,1601 0/0:73,0:73:99:0,181,2284 0/0:69,0:69:99:0,181,2273 0/0:60,0:60:99:0,162,1956 0/1:18,17:35:99:448,0,517 1/1:0,50:50:99:1534,132,0 0/0:36,0:36:93.29:0,93,1164 0/1:21,18:39:99:465,0,610 0/1:13,13:26:99:389,0,368 0/0:98,0:99:99:0,253,3080 0/0:60,2:63:99:0,132,1891 0/0:41,0:41:99:0,120,1452 0/0:49,0:49:99:0,132,1640 0/0:38,0:38:99:0,111,1332 0/1:32,36:69:99:851,0,860 0/1:20,18:38:99:408,0,566 0/1:18,23:41:99:639,0,492 0/0:40,0:40:99:0,102,1249 0/0:28,0:28:81.25:0,81,973 0/1:17,19:36:99:480,0,504 14 68035903 . A G 253.40 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.810;DP=2428;Dels=0.00;FS=5.942;HRun=0;HaplotypeScore=1.2311;InbreedingCoeff=-0.0120;MQ=59.33;MQ0=0;MQRankSum=2.655;QD=6.50;ReadPosRankSum=0.628 GT:AD:DP:GQ:PL 0/0:33,0:33:90.27:0,90,1071 0/0:43,0:43:99:0,120,1430 0/0:46,0:46:99:0,126,1510 0/0:91,0:91:99:0,217,2676 0/0:77,0:77:99:0,205,2441 0/0:70,0:70:99:0,178,2246 0/0:59,0:59:99:0,150,1843 0/0:76,0:76:99:0,196,2382 0/0:53,0:53:99:0,141,1668 0/0:47,0:47:99:0,120,1457 0/0:31,0:31:81.24:0,81,986 0/0:38,0:38:99:0,108,1295 0/0:32,0:32:81.24:0,81,994 0/0:34,0:34:93.28:0,93,1119 0/0:143,0:143:99:0,361,4363 0/0:39,0:39:99:0,108,1268 0/0:46,0:46:99:0,135,1549 0/1:28,11:39:99:300,0,743 0/0:95,1:96:99:0,222,3013 0/0:94,0:94:99:0,226,2832 0/0:84,1:85:99:0,220,2678 0/0:53,0:53:99:0,135,1643 0/0:101,0:101:99:0,262,3149 0/0:70,0:70:99:0,174,2146 0/0:69,0:69:99:0,184,2226 0/0:65,0:65:99:0,162,2004 0/0:48,0:48:99:0,129,1530 0/0:48,0:48:99:0,129,1542 0/0:36,0:36:99:0,99,1168 0/0:39,0:39:99:0,105,1225 0/0:37,0:37:99:0,111,1310 0/0:104,0:104:99:0,268,3231 0/0:63,0:63:99:0,178,2082 0/0:46,0:46:99:0,126,1503 0/0:50,0:50:99:0,138,1639 0/0:43,0:43:99:0,120,1421 0/0:71,0:71:99:0,184,2216 0/0:50,0:50:99:0,123,1508 0/0:48,0:49:99:0,138,1612 0/0:34,0:34:99:0,99,1168 0/0:46,0:46:99:0,132,1540 0/0:34,0:34:99:0,99,1177 14 68044026 . G A 50.75 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.037;DP=350;Dels=0.00;FS=2.567;HRun=0;HaplotypeScore=0.2217;InbreedingCoeff=-0.0274;MQ=59.28;MQ0=0;MQRankSum=1.158;QD=8.46;ReadPosRankSum=-0.876 GT:AD:DP:GQ:PL 0/0:4,0:4:12.03:0,12,134 0/0:3,0:3:9.03:0,9,113 0/0:6,0:6:18.03:0,18,197 0/0:10,0:10:24.07:0,24,295 0/0:10,0:10:27.08:0,27,325 0/0:8,0:8:24.07:0,24,290 0/1:3,3:6:88.49:97,0,88 0/0:8,0:8:24.07:0,24,288 0/0:6,0:6:15.04:0,15,178 0/0:6,0:6:18.05:0,18,204 0/0:2,0:2:6.02:0,6,65 0/0:3,0:3:9.02:0,9,100 0/0:11,0:11:27.07:0,27,327 0/0:5,0:5:15.05:0,15,182 0/0:24,0:24:57.15:0,57,669 0/0:5,0:5:12.03:0,12,142 0/0:9,0:9:27.08:0,27,312 0/0:10,0:10:27.06:0,27,314 0/0:11,0:11:24.07:0,24,282 0/0:21,0:21:54.15:0,54,620 0/0:17,0:17:45.12:0,45,514 0/0:17,0:17:48.11:0,48,536 0/0:8,0:8:21.06:0,21,261 0/0:4,0:4:9.03:0,9,123 0/0:2,0:2:6.02:0,6,76 0/0:8,0:8:18.06:0,18,224 0/0:5,0:5:12.03:0,12,146 0/0:10,0:10:27.05:0,27,286 0/0:9,0:9:24.06:0,24,270 0/0:4,0:4:12.03:0,12,132 0/0:7,0:7:18.05:0,18,212 0/0:9,0:9:27.08:0,27,324 0/0:12,0:12:27.07:0,27,319 0/0:5,0:5:15.04:0,15,169 0/0:8,0:8:24.07:0,24,270 0/0:9,0:9:27.08:0,27,323 0/0:13,0:13:36.10:0,36,423 0/0:10,0:10:27.07:0,27,307 0/0:6,0:6:18.05:0,18,218 0/0:5,0:5:15.03:0,15,164 0/0:6,0:6:18.05:0,18,197 0/0:8,0:8:24.07:0,24,278 14 68048835 . C G 193.66 . AC=8;AF=0.095;AN=84;BaseQRankSum=-8.960;DP=910;Dels=0.00;FS=85.331;HRun=1;HaplotypeScore=0.3848;InbreedingCoeff=-0.1372;MQ=58.56;MQ0=0;MQRankSum=-0.490;QD=1.09;ReadPosRankSum=-3.344 GT:AD:DP:GQ:PL 0/1:16,6:22:8.57:9,0,193 0/0:15,5:20:4.72:0,5,371 0/1:7,5:12:40.96:41,0,164 0/0:14,8:22:18.05:0,18,215 0/0:17,11:28:33.10:0,33,426 0/0:16,5:21:30.06:0,30,350 0/0:11,9:20:21.05:0,21,264 0/0:20,6:26:1.18:5,0,524 0/0:12,8:20:27.09:0,27,340 0/0:10,5:15:18.03:0,18,206 0/0:19,9:28:42.13:0,42,522 0/0:8,2:10:21.04:0,21,247 0/1:9,5:14:8.56:9,0,204 0/0:17,6:23:39.10:0,39,471 0/1:25,20:45:23.32:23,0,715 0/0:17,9:26:39.06:0,39,452 0/0:8,11:19:18.01:0,18,187 0/0:15,9:24:39.11:0,39,474 0/1:14,13:27:99:157,0,390 0/0:33,10:44:60.12:0,60,700 0/0:18,8:26:51.16:0,51,640 0/0:11,3:14:15.03:0,15,173 0/0:22,14:36:51.13:0,51,631 0/0:13,10:23:27.08:0,27,351 0/0:15,5:20:33.07:0,33,407 0/0:13,6:19:27.08:0,27,341 0/0:11,5:16:21.03:0,21,231 0/0:15,6:21:33.10:0,33,404 0/0:14,5:19:27.07:0,27,314 0/0:12,6:18:33.01:0,33,340 0/0:12,8:20:1.65:3,0,303 0/0:27,7:34:3.94:0,4,580 0/0:19,7:26:4.72:0,5,370 0/0:10,4:15:27.05:0,27,312 0/0:6,10:16:9.03:0,9,115 0/1:9,5:14:32:32,0,211 0/1:17,13:31:10.21:10,0,427 0/0:13,4:17:24.05:0,24,273 0/0:9,2:11:21.06:0,21,248 0/0:16,6:22:39.08:0,39,442 0/1:7,5:12:22.32:22,0,100 0/0:11,3:14:27.09:0,27,346 14 68048874 . A G 5459.46 . AC=39;AF=0.464;AN=84;BaseQRankSum=-17.978;DP=1022;Dels=0.00;FS=1223.406;HRun=3;HaplotypeScore=0.7738;InbreedingCoeff=-0.8670;MQ=57.48;MQ0=0;MQRankSum=-0.345;QD=5.85;ReadPosRankSum=-13.300 GT:AD:DP:GQ:PL 0/1:13,7:20:83.80:84,0,409 0/1:16,6:22:88.09:88,0,499 0/1:10,9:19:99:216,0,309 0/1:17,16:33:99:261,0,458 0/1:21,11:32:99:170,0,699 0/1:22,9:31:99:140,0,666 0/1:11,6:17:99:114,0,323 0/1:16,15:31:99:201,0,471 0/0:9,2:11:23.56:0,24,273 0/1:8,4:12:38.14:38,0,224 0/1:15,13:28:99:238,0,450 0/1:9,6:15:60.24:60,0,233 0/1:12,5:17:99:106,0,397 0/1:13,9:22:99:195,0,408 0/1:43,15:58:99:137,0,1314 0/1:10,9:19:99:150,0,298 0/1:13,9:22:59.69:60,0,388 0/1:19,11:30:99:195,0,616 0/0:20,6:26:27.16:0,27,682 0/1:22,18:40:99:253,0,593 0/1:22,15:37:99:309,0,651 0/1:10,13:23:99:128,0,259 0/1:21,14:35:99:174,0,641 0/1:11,12:23:99:105,0,311 0/1:11,13:24:99:179,0,304 0/1:10,12:22:99:134,0,307 0/1:9,11:20:99:172,0,212 0/1:12,6:18:49.23:49,0,394 0/1:5,5:10:91.65:92,0,159 0/1:13,7:20:99:125,0,428 0/1:13,7:20:97.20:97,0,425 0/1:25,20:45:99:192,0,738 0/1:15,9:24:99:122,0,448 0/1:6,6:12:93.41:93,0,161 0/1:12,5:17:52.83:53,0,387 0/1:7,8:15:99:129,0,190 0/0:44,7:51:28.62:0,29,1362 0/1:6,5:11:99:132,0,189 0/1:11,10:21:99:147,0,361 0/1:21,10:31:99:132,0,677 0/1:9,8:17:99:123,0,253 0/1:16,5:21:66.72:67,0,494 14 68048877 . T G 66.35 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.520;DP=1014;Dels=0.00;FS=147.718;HRun=2;HaplotypeScore=0.8099;InbreedingCoeff=-0.0612;MQ=57.33;MQ0=0;MQRankSum=0.121;QD=1.09;ReadPosRankSum=-5.900 GT:AD:DP:GQ:PL 0/0:14,5:19:14.44:0,14,422 0/0:16,7:23:19.61:0,20,562 0/0:12,5:17:30.09:0,30,361 0/0:22,10:32:40.07:0,40,670 0/0:22,9:32:63.18:0,63,774 0/0:25,6:32:34.84:0,35,799 0/0:12,4:16:36.09:0,36,419 0/0:16,8:24:1.75:3,0,551 0/0:11,0:11:33.10:0,33,400 0/0:10,4:14:30.09:0,30,364 0/0:18,11:29:20.73:0,21,583 0/0:12,5:17:6.48:0,6,366 0/0:17,4:21:51.14:0,51,595 0/0:17,6:23:48.13:0,48,563 0/0:48,6:54:99:0,111,1527 0/0:10,5:15:30.09:0,30,366 0/0:15,7:22:45.14:0,45,542 0/0:21,8:29:60.18:0,60,726 0/0:27,3:30:78.24:0,78,947 0/0:27,12:39:72.23:0,72,894 0/0:30,8:38:30.59:0,31,960 0/0:12,11:23:13.39:0,13,354 0/0:30,11:41:1.87:3,0,988 0/0:15,10:25:17.47:0,17,504 0/0:11,7:18:6.27:0,6,294 0/1:12,8:20:57.92:58,0,355 0/0:10,8:18:9.40:0,9,336 0/0:13,5:18:39.12:0,39,469 0/0:6,4:10:0.46:10,0,185 0/0:14,6:20:42.13:0,42,503 0/0:15,7:22:45.13:0,45,536 0/1:27,14:41:68.15:68,0,820 0/0:19,7:26:26.58:0,27,619 0/0:8,3:11:24.05:0,24,265 0/0:15,3:18:45.13:0,45,520 0/0:9,8:17:27.08:0,27,329 0/0:44,6:51:99:0,123,1512 0/0:6,4:10:18.06:0,18,221 0/0:11,7:18:33.10:0,33,402 0/0:25,5:30:72.22:0,72,878 0/0:11,5:16:30.09:0,30,365 0/0:18,6:24:54.17:0,54,660 14 68066769 . G C 253.60 . AC=17;AF=0.213;AN=80;BaseQRankSum=-2.446;DP=263;Dels=0.00;FS=307.645;HRun=2;HaplotypeScore=0.3365;InbreedingCoeff=-0.2335;MQ=56.70;MQ0=2;MQRankSum=1.087;QD=2.21;ReadPosRankSum=-7.983 GT:AD:DP:GQ:PL 0/1:2,1:3:25.33:25,0,56 0/0:6,0:6:18.03:0,18,186 0/1:6,1:7:18.10:18,0,133 0/1:11,7:18:51.24:51,0,282 0/0:8,1:9:2.72:1,0,241 0/1:2,2:4:29.55:30,0,64 0/0:9,1:11:26.67:0,27,291 0/1:8,5:13:8.17:8,0,257 0/0:6,0:6:15.03:0,15,161 0/0:1,2:3:3.01:0,3,33 0/1:3,1:4:20.47:20,0,85 ./.:.:3:.:0,0,0 1/1:0,1:1:3.01:34,3,0 0/0:1,1:2:3.01:0,3,32 0/0:12,2:14:33.06:0,33,341 0/0:5,0:5:15.04:0,15,169 ./. 0/0:4,2:6:9.49:0,9,98 0/1:4,3:7:50.48:50,0,114 0/0:3,2:5:3.01:0,3,33 0/0:10,1:11:22.87:0,23,224 0/1:4,1:5:18.56:19,0,81 0/1:6,6:12:52.98:53,0,176 0/0:6,4:10:2.81:0,0,126 0/0:5,2:7:15.04:0,15,178 0/1:7,3:10:6.53:7,0,216 0/0:5,1:6:15.04:0,15,158 0/0:5,1:7:12.03:0,12,125 0/0:2,1:3:6.02:0,6,65 0/0:3,1:4:9.02:0,9,90 0/0:2,3:5:6.02:0,6,65 0/0:3,0:3:9.02:0,9,96 0/1:2,1:3:15.67:16,0,56 0/1:6,2:8:21.43:21,0,110 0/0:4,0:4:6.01:0,6,58 0/1:5,1:6:11.58:12,0,143 0/0:6,1:7:13.28:0,13,132 0/0:5,1:6:11.50:0,11,126 0/1:3,1:4:23.22:23,0,85 0/1:6,1:7:10.52:11,0,158 0/0:5,0:5:15.04:0,15,162 0/0:3,0:3:9.02:0,9,102 14 68066882 . G C 54.39 . AC=5;AF=0.064;AN=78;BaseQRankSum=-2.270;DP=186;Dels=0.00;FS=20.167;HRun=2;HaplotypeScore=0.1022;InbreedingCoeff=0.0882;MQ=56.73;MQ0=0;MQRankSum=-0.878;QD=3.89;ReadPosRankSum=-2.661 GT:AD:DP:GQ:PL 0/0:3,1:4:3.01:0,3,39 0/1:2,2:4:24.41:24,0,65 0/0:3,0:3:9.03:0,9,115 0/0:4,4:8:9.03:0,9,108 0/0:4,4:8:9.03:0,9,110 0/0:7,0:7:15.01:0,15,154 0/0:2,2:4:3.01:0,3,42 0/0:5,1:6:9.03:0,9,111 0/0:1,1:2:3:0,3,28 ./. 0/0:4,1:5:9.03:0,9,105 0/0:1,0:1:3.01:0,3,30 0/0:4,0:4:12.03:0,12,133 0/0:2,1:3:3.01:0,3,39 0/0:6,3:10:18.06:0,18,221 0/0:2,2:4:3.01:0,3,36 0/0:3,1:5:8.39:0,8,74 0/1:2,1:3:1.76:22,3,0 0/0:4,0:4:9.03:0,9,113 0/0:6,5:11:15.05:0,15,188 ./. 0/0:2,0:2:3.01:0,3,37 0/0:4,4:8:6.02:0,6,79 0/0:4,2:6:9.01:0,9,101 0/0:3,1:4:3.01:0,3,41 0/0:4,0:4:9.01:0,9,97 1/1:0,4:4:6.02:69,6,0 0/1:1,2:3:26.48:26,0,33 0/0:1,1:2:3.01:0,3,39 0/0:1,4:5:3.01:0,3,31 ./. 0/0:7,2:9:21.06:0,21,248 0/0:3,2:5:6.02:0,6,75 0/0:1,0:1:3.01:0,3,37 0/0:3,4:7:9.02:0,9,102 0/0:1,0:1:3.01:0,3,36 0/0:5,0:5:9.02:0,9,100 0/0:1,0:1:3.01:0,3,33 0/0:1,1:2:3.01:0,3,38 0/0:2,2:4:6.02:0,6,70 0/0:2,2:4:6.02:0,6,68 0/0:2,2:4:6.02:0,6,69 14 68066906 . C T 44.96 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.623;DP=223;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.1848;InbreedingCoeff=-0.0588;MQ=57.02;MQ0=0;MQRankSum=0.850;QD=6.42;ReadPosRankSum=-1.305 GT:AD:DP:GQ:PL 0/0:3,0:3:9.03:0,9,116 0/0:2,0:2:6.02:0,6,79 0/0:2,0:2:6.02:0,6,73 0/0:8,0:8:24.08:0,24,325 0/0:10,0:10:27.09:0,27,359 0/0:8,0:8:24.07:0,24,296 0/1:4,3:7:90.65:91,0,136 0/0:6,0:6:15.05:0,15,206 0/0:2,0:2:6.02:0,6,73 0/0:1,0:1:3.01:0,3,31 0/0:5,0:5:12.04:0,12,149 0/0:1,0:1:3.01:0,3,38 0/0:4,0:4:6.01:0,6,70 0/0:4,0:4:12.04:0,12,148 0/0:11,0:11:33.10:0,33,414 0/0:6,0:6:15.04:0,15,180 0/0:3,0:3:9.03:0,9,107 0/0:4,0:4:12.04:0,12,155 0/0:6,0:6:15.04:0,15,188 0/0:12,0:12:30.10:0,30,384 0/0:10,0:10:24.07:0,24,299 0/0:4,0:4:12.03:0,12,139 0/0:12,0:12:36.10:0,36,440 0/0:9,0:9:24.08:0,24,322 0/0:8,0:8:21.06:0,21,269 0/0:2,0:2:6.02:0,6,77 0/0:5,0:5:15.04:0,15,179 0/0:3,0:3:9.02:0,9,100 0/0:3,0:3:9.03:0,9,109 0/0:5,0:5:15.05:0,15,183 0/0:2,0:2:6.01:0,6,67 0/0:12,0:12:27.08:0,27,328 0/0:7,0:7:21.06:0,21,263 0/0:1,0:1:3.01:0,3,39 0/0:7,0:7:18.05:0,18,214 0/0:3,0:3:9.03:0,9,112 0/0:6,0:6:15.03:0,15,178 0/0:4,0:4:12.04:0,12,144 0/0:2,0:2:5.99:0,6,60 0/0:6,0:6:15.04:0,15,178 0/0:4,0:4:12.03:0,12,139 0/0:3,0:3:9.02:0,9,107 14 68117457 . T G 886.48 . AC=1;AF=0.012;AN=84;BaseQRankSum=6.952;DP=3883;Dels=0.00;FS=7.570;HRun=1;HaplotypeScore=1.4121;InbreedingCoeff=-0.0120;MQ=59.47;MQ0=0;MQRankSum=0.617;QD=13.04;ReadPosRankSum=-0.534 GT:AD:DP:GQ:PL 0/0:72,0:72:99:0,187,2320 0/0:90,0:90:99:0,250,3060 0/0:69,0:69:99:0,181,2255 0/0:148,0:148:99:0,373,4733 0/0:127,0:127:99:0,346,4390 0/0:133,1:134:99:0,361,4678 0/0:112,0:112:99:0,277,3609 0/0:117,0:117:99:0,295,3757 0/0:80,0:80:99:0,202,2519 0/0:92,0:92:99:0,259,3146 0/0:84,0:84:99:0,235,2846 0/0:75,0:75:99:0,202,2486 0/0:76,0:76:99:0,202,2470 0/0:62,0:62:99:0,175,2108 0/0:243,0:243:99:0,617,7645 0/0:68,1:69:99:0,187,2303 0/0:69,0:69:99:0,193,2371 0/0:80,0:80:99:0,214,2643 0/0:99,0:99:99:0,256,3179 0/0:122,0:122:99:0,310,3862 0/0:98,0:98:99:0,262,3262 0/0:73,0:73:99:0,196,2400 0/0:169,0:169:99:0,445,5610 0/0:88,0:88:99:0,229,2898 0/0:123,0:123:99:0,328,4136 0/0:117,0:117:99:0,310,3920 0/0:62,0:62:99:0,169,2060 0/0:79,0:79:99:0,223,2723 0/0:82,0:83:99:0,220,2701 0/0:80,0:80:99:0,211,2621 0/0:38,0:38:99:0,111,1354 0/0:91,0:92:99:0,241,3043 0/0:60,0:60:99:0,169,2062 0/0:78,0:78:99:0,226,2769 0/0:71,0:71:99:0,190,2357 0/0:79,0:79:99:0,220,2695 0/0:123,0:123:99:0,304,3817 0/0:88,0:88:99:0,223,2793 0/0:61,1:62:99:0,150,2085 0/0:67,0:67:99:0,193,2362 0/0:65,0:65:99:0,190,2269 0/1:38,30:68:99:933,0,1111 14 68221836 . T A 2319.04 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.398;DP=5323;DS;Dels=0.00;FS=8.831;HRun=1;HaplotypeScore=2.4122;InbreedingCoeff=-0.0244;MQ=59.45;MQ0=0;MQRankSum=0.547;QD=12.21;ReadPosRankSum=-0.021 GT:AD:DP:GQ:PL 0/0:96,0:96:99:0,280,3359 0/1:49,41:90:99:1171,0,1358 0/1:58,42:100:99:1211,0,1741 0/0:208,0:209:99:0,611,7382 0/0:175,0:175:99:0,515,6252 0/0:185,0:185:99:0,539,6649 0/0:148,0:148:99:0,424,5264 0/0:163,0:163:99:0,472,5756 0/0:77,0:77:99:0,226,2699 0/0:106,0:106:99:0,298,3557 0/0:95,0:95:99:0,277,3309 0/0:97,0:97:99:0,283,3383 0/0:80,0:80:99:0,226,2739 0/0:79,0:79:99:0,232,2766 0/0:232,0:233:99:0,659,7823 0/0:85,0:85:99:0,253,3028 0/0:107,0:107:99:0,307,3737 0/0:87,0:87:99:0,253,3019 0/0:181,0:181:99:0,527,6397 0/0:202,0:202:99:0,578,6978 0/0:157,0:158:99:0,451,5496 0/0:119,0:119:99:0,343,4132 0/0:228,0:228:99:0,662,8011 0/0:147,0:147:99:0,418,5101 0/0:166,0:166:99:0,478,5872 0/0:148,0:149:99:0,427,5250 0/0:71,0:71:99:0,202,2439 0/0:93,0:93:99:0,274,3258 0/0:105,0:105:99:0,310,3661 0/0:92,0:92:99:0,265,3151 0/0:97,0:97:99:0,274,3320 0/0:184,0:185:99:0,515,6231 0/0:129,0:129:99:0,373,4450 0/0:109,0:109:99:0,322,3893 0/0:95,0:96:99:0,271,3241 0/0:103,0:103:99:0,292,3523 0/0:178,0:178:99:0,518,6307 0/0:94,0:94:99:0,274,3291 0/0:106,0:106:99:0,310,3681 0/0:103,0:103:99:0,307,3659 0/0:88,0:88:99:0,259,3082 0/0:112,0:112:99:0,322,3869 14 68251934 . G A 2311.12 . AC=4;AF=0.048;AN=84;BaseQRankSum=-11.559;DP=1822;Dels=0.00;FS=2.062;HRun=0;HaplotypeScore=1.4973;InbreedingCoeff=-0.0500;MQ=59.35;MQ0=0;MQRankSum=-0.091;QD=13.59;ReadPosRankSum=0.487 GT:AD:DP:GQ:PL 0/0:33,0:33:90.28:0,90,1130 0/1:21,25:46:99:645,0,612 0/1:16,21:37:99:593,0,501 0/0:57,0:57:99:0,169,2175 0/0:59,0:59:99:0,175,2303 0/0:42,0:42:99:0,120,1531 0/0:37,0:37:99:0,105,1387 0/0:55,0:55:99:0,156,2040 0/0:30,0:31:84.25:0,84,1031 0/0:38,0:38:99:0,108,1323 0/0:34,0:34:99:0,99,1242 0/0:30,0:30:87.27:0,87,1082 0/0:33,0:33:96.30:0,96,1197 0/0:39,0:39:99:0,114,1417 0/0:86,0:87:99:0,244,3016 0/0:57,0:57:99:0,162,1993 0/0:31,0:31:93.29:0,93,1141 0/0:28,0:28:78.21:0,78,935 0/0:68,0:68:99:0,184,2265 0/0:50,0:50:99:0,144,1775 0/0:54,0:54:99:0,141,1752 0/0:37,0:37:99:0,102,1245 0/0:55,0:55:99:0,153,1989 0/0:28,0:28:78.22:0,78,966 0/0:46,0:46:99:0,126,1655 0/0:24,0:24:69.22:0,69,898 0/0:39,0:39:99:0,108,1333 0/0:48,0:48:99:0,144,1762 0/0:36,0:36:99:0,99,1243 0/0:38,0:40:99:0,114,1403 0/0:43,0:43:99:0,129,1568 0/0:64,0:65:99:0,187,2323 0/0:52,0:52:99:0,153,1922 0/1:23,28:53:99:770,0,663 0/1:19,15:34:99:390,0,582 0/0:40,0:40:99:0,120,1461 0/0:65,0:65:99:0,181,2220 0/0:31,0:31:81.25:0,81,994 0/0:39,0:39:99:0,111,1349 0/0:32,0:32:93.29:0,93,1152 0/0:31,0:31:90.27:0,90,1102 0/0:37,0:37:99:0,108,1333 14 68251963 . C A 125.24 . 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G A 837.04 . 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C T 3363.28 . 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G C 6026.78 . 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A T 4520.67 . AC=6;AF=0.071;AN=84;BaseQRankSum=-2.040;DP=4511;DS;Dels=0.00;FS=15.928;HRun=0;HaplotypeScore=1.9052;InbreedingCoeff=0.2821;MQ=58.44;MQ0=0;MQRankSum=1.317;QD=13.07;ReadPosRankSum=-2.317 GT:AD:DP:GQ:PL 0/0:88,0:89:99:0,229,2763 0/0:66,0:66:99:0,184,2189 0/0:64,0:64:99:0,184,2184 0/0:225,0:225:99:0,602,7261 0/0:190,0:190:99:0,515,6330 0/0:198,0:198:99:0,548,6925 0/0:171,0:171:99:0,424,5377 0/0:168,0:168:99:0,433,5376 0/0:68,1:70:99:0,147,2123 0/0:88,0:88:99:0,232,2706 0/0:72,0:72:99:0,202,2412 1/1:0,66:69:99:2058,174,0 0/1:35,31:67:99:724,0,917 0/1:40,19:63:99:476,0,1122 0/0:206,0:208:99:0,566,6671 0/0:73,0:73:99:0,202,2387 0/0:110,0:111:99:0,292,3539 0/1:48,20:71:99:486,0,1314 0/0:109,0:114:99:0,262,3192 0/0:106,0:106:99:0,289,3412 0/0:121,0:128:99:0,295,3610 0/0:79,0:79:99:0,214,2566 0/0:235,0:235:99:0,593,7393 0/0:177,0:177:99:0,475,5909 0/0:160,0:160:99:0,406,5081 0/0:168,0:168:99:0,439,5440 0/0:57,0:58:99:0,159,1905 0/0:100,0:100:99:0,277,3266 0/1:44,30:76:99:777,0,1199 0/0:77,0:78:99:0,202,2407 0/0:68,0:68:99:0,199,2348 0/0:92,0:93:99:0,247,2960 0/0:55,0:55:99:0,141,1709 0/0:77,0:77:99:0,202,2419 0/0:84,0:84:99:0,223,2681 0/0:83,0:83:99:0,226,2668 0/0:90,0:94:99:0,241,2870 0/0:85,0:86:99:0,238,2822 0/0:79,0:79:99:0,223,2630 0/0:101,0:101:99:0,280,3366 0/0:68,1:69:99:0,156,2193 0/0:79,0:79:99:0,211,2529 14 68271981 . C A 821.73 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.808;DP=1286;Dels=0.00;FS=2.333;HRun=2;HaplotypeScore=0.6878;InbreedingCoeff=-0.0370;MQ=59.21;MQ0=0;MQRankSum=2.021;QD=11.91;ReadPosRankSum=-0.149 GT:AD:DP:GQ:PL 0/0:35,0:35:81.26:0,81,1061 0/0:24,0:24:54.17:0,54,704 0/0:18,0:18:51.16:0,51,640 0/0:57,0:57:99:0,147,1932 0/0:38,0:38:99:0,105,1416 0/0:20,0:20:48.16:0,48,666 0/1:17,11:28:99:336,0,460 0/0:38,0:38:99:0,99,1349 0/0:19,0:19:51.16:0,51,643 0/0:30,0:30:84.26:0,84,1045 0/0:23,0:23:66.20:0,66,808 0/0:34,0:34:84.23:0,84,1038 0/0:19,0:19:48.15:0,48,612 0/0:28,0:28:81.25:0,81,996 0/0:92,0:92:99:0,220,2799 0/0:33,0:33:93.24:0,93,1130 0/0:27,0:27:72.20:0,72,890 0/0:22,0:22:63.19:0,63,757 0/0:41,0:41:99:0,111,1318 0/0:69,0:69:99:0,184,2317 0/0:50,0:50:99:0,126,1564 0/0:37,0:37:96.30:0,96,1202 0/0:34,0:34:99:0,99,1315 0/0:18,0:18:42.14:0,42,570 0/0:31,0:31:81.26:0,81,1092 0/0:19,0:19:48.15:0,48,639 0/0:19,0:19:51.16:0,51,635 0/0:20,0:20:60.18:0,60,732 0/0:23,0:23:60.18:0,60,738 0/0:18,0:18:51.16:0,51,637 0/0:19,0:19:51.16:0,51,642 0/0:43,0:43:99:0,114,1418 0/0:35,0:35:90.28:0,90,1150 0/1:11,12:23:99:310,0,328 0/1:9,9:18:99:252,0,260 0/0:19,0:19:48.15:0,48,616 0/0:40,0:40:99:0,102,1272 0/0:28,0:28:72.23:0,72,913 0/0:26,0:26:72.23:0,72,914 0/0:31,0:31:75.24:0,75,958 0/0:18,0:18:42.13:0,42,534 0/0:22,0:22:63.18:0,63,770 14 68282651 . A C 916.76 . AC=3;AF=0.036;AN=84;BaseQRankSum=-7.722;DP=1395;Dels=0.00;FS=1.185;HRun=1;HaplotypeScore=0.7582;InbreedingCoeff=-0.0370;MQ=59.20;MQ0=0;MQRankSum=-0.862;QD=10.91;ReadPosRankSum=-0.436 GT:AD:DP:GQ:PL 0/0:25,0:25:72.22:0,72,885 0/0:22,0:22:66.21:0,66,819 0/0:22,0:22:63.20:0,63,799 0/0:38,0:38:99:0,111,1387 0/0:46,0:46:99:0,138,1736 0/0:40,0:40:99:0,117,1507 0/0:32,0:32:93.30:0,93,1194 0/0:31,0:31:93.27:0,93,1162 0/0:29,0:29:87.24:0,87,1049 0/0:28,0:28:78.23:0,78,937 0/0:30,0:30:90.23:0,90,1075 0/0:28,0:28:81.25:0,81,1008 0/0:26,0:26:72.23:0,72,906 0/0:15,0:15:45.14:0,45,552 0/0:89,0:90:99:0,247,2991 0/0:28,0:28:84.26:0,84,1029 0/0:22,0:22:66.21:0,66,817 0/0:23,0:23:69.19:0,69,834 0/0:56,1:57:99:0,150,1812 0/0:57,0:57:99:0,165,2020 0/0:54,1:55:99:0,150,1830 0/0:39,0:39:99:0,108,1328 0/0:46,0:46:99:0,135,1677 0/0:31,0:31:93.29:0,93,1175 0/0:35,0:35:99:0,105,1346 0/0:29,0:29:87.24:0,87,1069 0/0:25,0:25:75.23:0,75,929 0/1:13,13:26:99:349,0,356 0/0:25,0:25:66.21:0,66,833 0/1:10,14:24:99:334,0,300 0/1:21,13:34:99:310,0,636 0/0:49,0:49:99:0,138,1726 0/0:40,0:40:99:0,105,1315 0/0:22,0:23:63.20:0,63,782 0/0:17,0:17:51.11:0,51,592 0/0:26,0:26:78.21:0,78,941 0/0:45,0:45:99:0,129,1592 0/0:22,0:22:63.19:0,63,773 0/0:26,0:26:78.24:0,78,957 0/0:27,0:27:78.23:0,78,941 0/0:29,0:29:87.26:0,87,1053 0/0:33,0:33:96.31:0,96,1218 14 68301897 . G T 493.41 . AC=14;AF=0.167;AN=84;BaseQRankSum=-23.882;DP=2864;Dels=0.00;FS=1720.909;HRun=2;HaplotypeScore=1.6046;InbreedingCoeff=-0.2160;MQ=58.72;MQ0=0;MQRankSum=-0.701;QD=0.64;ReadPosRankSum=-20.532 GT:AD:DP:GQ:PL 0/0:34,11:45:35.27:0,35,1066 0/0:32,11:43:87.27:0,87,1059 0/0:30,10:40:31.62:0,32,899 0/0:111,63:174:99:0,142,3595 0/1:79,47:126:27.44:27,0,2437 0/0:75,39:114:99:0,168,2640 0/0:61,27:88:77.40:0,77,1913 0/0:66,38:104:99:0,99,2197 0/0:33,16:49:71.28:0,71,1094 0/0:49,5:54:99:0,126,1492 0/1:26,16:42:8.24:8,0,651 0/1:34,19:53:49.05:49,0,830 0/0:36,23:59:52.16:0,52,1048 0/0:30,5:35:80.05:0,80,939 0/0:141,55:196:99:0,194,4169 0/1:28,13:41:4.44:4,0,817 0/1:35,19:54:50.93:51,0,1005 0/0:33,16:49:1.74:3,0,839 0/0:46,25:71:77.62:0,78,1299 0/0:53,22:75:99:0,100,1640 0/1:45,19:64:24.89:25,0,1342 0/1:26,20:46:36.14:36,0,524 0/0:92,46:138:99:0,149,3085 0/0:63,27:90:99:0,133,1926 0/0:61,42:103:77.93:0,78,2016 0/0:69,35:104:99:0,136,2166 0/1:29,20:50:56.80:57,0,774 0/1:37,14:51:35.20:35,0,1089 0/1:26,15:41:66.27:66,0,762 0/1:36,23:59:15.84:16,0,1095 0/0:20,10:30:1.73:3,0,526 0/0:68,29:97:93.21:0,93,2011 0/0:35,14:49:53.03:0,53,958 0/0:43,13:56:71.98:0,72,1341 0/0:29,12:41:36.84:0,37,907 0/1:34,22:56:99:141,0,909 0/0:51,22:73:38.26:0,38,1405 0/1:30,15:45:79.52:80,0,763 0/0:31,16:47:29.14:0,29,932 0/0:26,10:36:44.55:0,45,809 0/0:26,9:35:46.59:0,47,757 0/1:27,14:41:42.04:42,0,636 14 69061259 . C G 201.21 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.222;DP=445;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2591;InbreedingCoeff=-0.0280;MQ=59.22;MQ0=1;MQRankSum=0.024;QD=11.84;ReadPosRankSum=2.047 GT:AD:DP:GQ:PL 0/0:16,0:16:45.14:0,45,566 0/0:7,0:7:18.06:0,18,224 0/0:12,0:12:36.11:0,36,451 0/0:13,0:13:39.12:0,39,519 0/0:12,0:12:36.12:0,36,477 0/0:7,0:7:21.07:0,21,294 0/0:12,0:12:36.10:0,36,477 0/0:7,0:7:21.07:0,21,277 0/0:7,0:7:15.05:0,15,190 0/0:7,0:7:21.07:0,21,268 0/0:11,0:11:33.08:0,33,407 0/0:14,0:14:39.12:0,39,499 0/0:6,0:6:18.06:0,18,225 0/0:7,0:7:18.06:0,18,226 0/0:34,0:34:93.28:0,93,1183 0/0:8,0:8:24.08:0,24,309 0/0:11,0:11:33.10:0,33,406 0/0:10,0:10:27.09:0,27,350 0/0:14,0:14:39.12:0,39,478 0/0:17,0:17:51.16:0,51,645 0/0:5,0:5:15.05:0,15,192 0/0:13,0:13:30.10:0,30,394 0/0:17,0:17:51.17:0,51,710 0/1:7,3:10:91.20:91,0,259 0/0:9,0:9:27.09:0,27,365 0/1:2,5:7:61.94:172,0,62 0/0:9,0:9:27.09:0,27,347 0/0:9,0:9:27.08:0,27,327 0/0:8,0:8:24.08:0,24,303 0/0:6,0:6:18.06:0,18,231 0/0:9,0:9:27.08:0,27,330 0/0:13,0:13:36.12:0,36,470 0/0:5,0:5:12.04:0,12,155 0/0:7,0:7:21.07:0,21,268 0/0:9,0:9:27.09:0,27,342 0/0:11,0:11:33.10:0,33,406 0/0:19,0:19:54.17:0,54,682 0/0:12,0:12:36.11:0,36,452 0/0:6,0:6:18.05:0,18,216 0/0:5,0:5:15.05:0,15,186 0/0:15,0:16:39.11:0,39,490 0/0:8,0:8:21.07:0,21,270 14 69341658 . G A 1761.15 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.994;DP=1251;Dels=0.00;FS=5.237;HRun=0;HaplotypeScore=1.4080;InbreedingCoeff=-0.0244;MQ=58.35;MQ0=0;MQRankSum=0.573;QD=11.51;ReadPosRankSum=2.242 GT:AD:DP:GQ:PL 0/0:17,0:17:48.13:0,48,595 0/0:30,0:30:75.23:0,75,942 0/0:24,0:24:63.19:0,63,770 0/1:43,37:80:99:886,0,1259 0/1:39,34:73:99:937,0,1165 0/0:58,0:58:99:0,168,2119 0/0:48,0:48:99:0,129,1687 0/0:50,0:50:99:0,147,1899 0/0:20,0:20:54.16:0,54,676 0/0:14,0:14:33.10:0,33,411 0/0:28,0:28:75.23:0,75,944 0/0:19,0:19:51.13:0,51,609 0/0:18,0:18:48.13:0,48,586 0/0:14,0:14:36.11:0,36,451 0/0:56,0:56:99:0,153,1857 0/0:18,0:18:51.15:0,51,628 0/0:18,0:18:45.13:0,45,568 0/0:12,0:12:36.07:0,36,403 0/0:30,0:31:84.23:0,84,1006 0/0:35,0:35:87.26:0,87,1073 0/0:31,0:31:84.26:0,84,1058 0/0:31,0:31:84.23:0,84,1029 0/0:88,0:88:99:0,250,3203 0/0:47,0:47:99:0,126,1653 0/0:49,0:49:99:0,135,1776 0/0:23,0:23:66.21:0,66,867 0/0:16,0:16:45.10:0,45,509 0/0:19,0:19:51.16:0,51,653 0/0:16,0:16:39.12:0,39,479 0/0:24,0:24:63.19:0,63,767 0/0:14,0:14:42.11:0,42,498 0/0:32,0:32:90.28:0,90,1141 0/0:29,0:29:78.23:0,78,948 0/0:18,0:18:54.14:0,54,641 0/0:13,0:13:39.11:0,39,468 0/0:22,0:22:60.18:0,60,734 0/0:26,0:26:66.16:0,66,751 0/0:16,0:16:45.14:0,45,553 0/0:9,0:9:27.08:0,27,325 0/0:16,0:16:36.11:0,36,461 0/0:25,0:25:69.19:0,69,842 0/0:24,0:24:72.21:0,72,883 14 69349234 . G T 97.62 . AC=8;AF=0.095;AN=84;BaseQRankSum=3.240;DP=1278;Dels=0.00;FS=527.668;HRun=1;HaplotypeScore=0.7591;InbreedingCoeff=-0.1318;MQ=58.24;MQ0=0;MQRankSum=-0.619;QD=0.40;ReadPosRankSum=-8.796 GT:AD:DP:GQ:PL 0/0:23,6:29:23.70:0,24,550 0/0:17,7:24:5.09:0,5,347 0/0:14,2:17:36.09:0,36,393 0/1:47,15:62:22.33:22,0,1316 0/0:50,10:60:50.09:0,50,1511 0/0:40,9:49:1.70:3,0,1083 0/0:23,10:33:24.86:0,25,592 0/1:34,9:43:24.58:25,0,1012 0/0:16,5:21:11.68:0,12,425 0/0:18,4:22:16.78:0,17,483 0/1:14,4:18:19.97:20,0,353 0/1:14,5:19:28.81:29,0,372 0/0:18,6:24:48.11:0,48,505 0/0:10,4:15:30.06:0,30,314 0/0:64,23:87:91.85:0,92,1626 0/0:18,8:26:4.73:0,5,343 0/0:15,5:20:39.09:0,39,415 0/1:14,7:21:19.67:20,0,404 0/0:26,6:32:24.01:0,24,560 0/0:28,12:40:10.09:0,10,662 0/0:33,9:42:34.58:0,35,903 0/1:17,8:25:54.56:55,0,353 0/0:59,13:72:99:0,107,1889 0/0:29,7:36:75.19:0,75,861 0/0:34,7:41:13.87:0,14,914 0/0:28,6:35:50.64:0,51,877 0/0:10,4:14:21.61:0,22,253 0/0:19,6:25:13.77:0,14,457 0/1:10,3:13:3.35:3,0,271 0/0:12,5:17:21.06:0,21,233 0/0:17,5:22:14.66:0,15,438 0/1:32,11:43:36.15:36,0,590 0/0:21,12:33:28.60:0,29,586 0/0:17,6:23:12:0,12,450 0/0:21,3:24:54.14:0,54,580 0/0:18,5:23:30.08:0,30,340 0/0:24,7:31:63.16:0,63,683 0/0:12,5:17:2.84:0,0,289 0/0:24,4:28:58.37:0,58,628 0/0:17,5:22:11.51:0,12,452 0/0:15,2:17:36.08:0,36,382 0/0:11,2:13:27.07:0,27,300 14 69584947 . C A 1598.05 . AC=24;AF=0.286;AN=84;BaseQRankSum=-24.402;DP=2821;Dels=0.00;FS=1462.558;HRun=2;HaplotypeScore=2.2278;InbreedingCoeff=-0.3982;MQ=58.90;MQ0=0;MQRankSum=-2.605;QD=1.03;ReadPosRankSum=-18.855 GT:AD:DP:GQ:PL 0/1:43,25:69:99:114,0,1176 0/1:42,19:61:99:100,0,1225 0/0:30,11:41:49.59:0,50,897 0/1:53,37:90:99:115,0,1647 0/1:44,32:76:5.68:6,0,1494 0/1:51,33:84:11.83:12,0,1492 0/0:49,25:74:37.83:0,38,1440 0/0:42,21:63:28.69:0,29,1247 0/1:40,30:70:99:237,0,1121 0/1:40,15:55:16.31:16,0,1272 0/1:39,21:60:32.43:32,0,1101 0/1:37,16:53:7.26:7,0,866 0/1:30,18:48:81.12:81,0,930 0/1:31,19:50:71.88:72,0,887 0/0:117,71:188:11.40:0,11,3408 0/0:30,12:42:28.26:0,28,867 0/1:38,14:52:41.70:42,0,1069 0/1:35,15:50:93.55:94,0,836 0/1:50,26:76:99:199,0,1433 0/0:70,31:101:69.61:0,70,1926 0/1:62,29:91:87.71:88,0,1781 0/0:43,18:61:81.15:0,81,1141 0/0:77,30:107:99:0,130,2482 0/1:41,25:66:61.26:61,0,1104 0/0:49,21:70:91.03:0,91,1515 0/0:34,13:47:89.62:0,90,1130 0/0:42,13:57:19.34:0,19,1216 0/0:29,17:46:39.89:0,40,914 0/1:35,15:50:24.70:25,0,876 0/0:37,26:64:17.59:0,18,1039 0/0:28,17:45:9.44:0,9,956 0/0:63,18:81:52.99:0,53,1825 0/1:45,28:73:42.33:42,0,1246 0/1:37,19:56:71.86:72,0,934 0/1:33,21:54:99:104,0,900 0/0:38,20:58:21.15:0,21,1054 0/1:60,21:81:38.73:39,0,1644 0/0:57,19:76:64.77:0,65,1722 0/1:36,21:57:64.58:65,0,895 0/1:46,24:70:79.24:79,0,1360 0/1:38,20:58:72.05:72,0,1106 0/0:36,14:50:6.75:0,7,1018 14 69795199 . G A 28877.77 . AC=30;AF=0.357;AN=84;BaseQRankSum=21.464;DP=2834;Dels=0.00;FS=2.003;HRun=0;HaplotypeScore=2.7935;InbreedingCoeff=-0.0370;MQ=58.84;MQ0=0;MQRankSum=1.439;QD=18.04;ReadPosRankSum=1.519 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1620,135,0 0/1:31,27:58:99:746,0,725 0/1:21,19:40:99:508,0,541 0/1:82,74:156:99:1933,0,2072 1/1:1,150:151:99:5063,390,0 0/0:108,0:108:99:0,271,3205 0/0:85,0:85:99:0,229,2682 0/0:98,0:98:99:0,259,2970 0/1:30,28:58:99:824,0,743 0/1:13,15:28:99:381,0,336 0/1:17,27:44:99:735,0,375 0/1:21,19:40:99:523,0,401 0/1:24,11:35:99:270,0,578 0/1:20,22:42:99:644,0,469 0/1:81,67:148:99:1651,0,1943 0/1:25,16:41:99:455,0,668 0/1:23,17:40:99:463,0,541 0/0:38,0:38:99:0,111,1186 0/0:81,0:81:99:0,198,2150 0/0:104,0:104:99:0,286,3128 0/0:71,0:71:99:0,177,1953 0/0:56,0:56:99:0,156,1665 0/0:170,0:170:99:0,472,5542 1/1:0,77:77:99:2523,211,0 1/1:1,89:90:99:2952,219,0 0/1:34,29:63:99:712,0,894 0/1:25,19:45:99:498,0,526 0/1:21,25:46:99:739,0,434 1/1:0,56:56:99:1911,162,0 0/0:48,1:50:99:0,101,1420 0/0:47,0:47:99:0,132,1377 0/0:95,0:95:99:0,253,2711 0/1:42,35:77:99:945,0,920 0/0:41,0:41:99:0,102,1090 0/0:43,0:43:99:0,123,1332 0/0:54,0:54:99:0,144,1549 0/1:38,44:82:99:1176,0,900 0/0:49,0:49:99:0,135,1439 0/1:29,27:56:99:730,0,634 0/1:26,22:48:99:543,0,685 0/0:43,0:43:99:0,114,1233 0/1:23,12:35:99:333,0,552 14 69795260 . T TG 2902.20 . AC=34;AF=0.405;AN=84;BaseQRankSum=-4.925;DP=2315;FS=1931.479;HRun=1;HaplotypeScore=189.8109;InbreedingCoeff=-0.6570;MQ=56.67;MQ0=1;MQRankSum=-1.117;QD=1.49;ReadPosRankSum=-19.943 GT:AD:DP:GQ:PL 0/0:40,0:40:27.50:0,28,734 0/1:38,0:38:12.47:12,0,680 0/0:36,0:36:35.05:0,35,729 0/1:142,0:142:99:177,0,2099 0/1:113,1:114:75.89:76,0,1665 0/1:86,0:85:57.82:58,0,1059 0/1:67,0:67:99:143,0,973 0/1:81,0:81:86.42:86,0,956 0/1:48,0:48:99:173,0,854 0/0:31,0:31:32.61:0,33,706 0/1:34,0:34:12.81:13,0,490 0/1:31,0:31:34.16:34,0,638 0/1:28,0:28:7.45:7,0,457 0/1:29,0:29:84.30:84,0,449 0/1:103,0:103:99:216,0,1977 0/1:36,0:36:28.11:28,0,693 0/1:40,0:40:57.33:57,0,793 0/1:29,0:29:99:104,0,422 0/1:55,0:54:99:163,0,891 0/0:90,0:90:20.44:0,20,2230 0/1:68,0:68:99:217,0,986 0/1:79,0:79:21.61:22,0,1432 0/1:133,0:133:99:346,0,1760 0/1:73,0:72:99:167,0,1075 0/1:84,0:82:99:185,0,840 0/0:56,0:56:6.71:0,7,672 0/1:25,0:25:1.07:1,0,427 0/1:24,10:34:99:112,0,551 0/1:34,0:34:13.90:14,0,674 0/1:48,0:48:48.66:49,0,833 0/1:44,0:44:17.25:17,0,704 0/1:66,1:67:37.94:38,0,1063 0/1:47,0:47:99:145,0,793 0/0:38,0:38:41.38:0,41,843 0/1:30,0:30:97.29:97,0,260 0/1:49,0:49:44.77:45,0,865 0/1:62,0:62:8.60:9,0,1312 0/0:32,0:32:24.42:0,24,659 0/0:41,0:41:92.57:0,93,1131 0/1:37,0:37:58.92:59,0,555 0/1:33,0:33:27.23:27,0,658 0/1:43,0:43:99:103,0,557 14 69795262 . C G 3731.90 . AC=31;AF=0.369;AN=84;BaseQRankSum=-14.738;DP=2175;Dels=0.00;FS=2046.997;HRun=1;HaplotypeScore=2.5407;InbreedingCoeff=-0.5880;MQ=57.28;MQ0=1;MQRankSum=-2.061;QD=2.11;ReadPosRankSum=-17.544 GT:AD:DP:GQ:PL 0/0:28,13:41:21.31:0,21,891 0/1:23,13:36:46.04:46,0,744 0/0:23,12:35:26.55:0,27,671 0/1:78,56:134:99:209,0,2215 0/1:61,46:107:99:109,0,1732 0/1:36,43:79:99:151,0,1146 0/1:32,30:62:99:165,0,935 0/1:41,36:77:99:111,0,1053 0/1:29,15:45:99:146,0,784 0/0:21,4:25:33.69:0,34,741 0/0:22,10:32:29.49:0,29,702 0/1:20,9:29:9.41:9,0,593 0/1:17,10:27:33.47:33,0,572 0/1:15,13:28:68.79:69,0,470 0/1:64,31:97:99:276,0,1697 0/1:23,9:32:6.21:6,0,670 0/1:28,12:40:98.70:99,0,832 0/1:16,13:29:99:157,0,448 0/1:33,19:52:99:260,0,873 0/0:68,23:91:62.53:0,63,2120 0/1:38,19:57:99:120,0,991 0/1:46,27:74:74.77:75,0,1370 0/1:66,57:124:99:356,0,1925 0/1:37,33:70:99:168,0,1015 0/1:31,46:77:99:256,0,944 0/1:21,34:55:99:107,0,682 0/0:14,8:22:6.78:0,7,324 0/0:24,4:28:54.15:0,54,649 0/0:21,11:32:5.02:0,5,681 0/1:30,15:45:99:114,0,852 0/1:27,13:40:15.29:15,0,733 0/1:40,28:68:99:133,0,1148 0/1:26,18:44:99:154,0,687 0/0:28,5:33:48.99:0,49,942 0/1:14,15:29:84.66:85,0,393 0/1:32,13:45:30.66:31,0,977 0/1:43,16:59:25.82:26,0,1317 0/0:19,11:30:20.19:0,20,626 0/0:35,6:41:77.55:0,78,1142 0/1:19,14:33:98.37:98,0,590 0/1:21,10:31:40.23:40,0,633 0/1:24,16:40:99:106,0,626 14 70170275 . A AC 115.12 . AC=6;AF=0.071;AN=84;BaseQRankSum=4.243;DP=3045;FS=658.317;HRun=2;HaplotypeScore=231.0623;InbreedingCoeff=-0.0886;MQ=59.09;MQ0=0;MQRankSum=0.246;QD=0.32;ReadPosRankSum=-24.458 GT:AD:DP:GQ:PL 0/0:58,0:58:29.29:0,29,1101 0/0:54,0:54:50.60:0,51,1203 0/0:45,0:45:36.44:0,36,899 0/0:112,0:112:99:0,161,2169 0/0:81,24:105:99:0,139,1993 0/0:83,0:81:99:0,113,1714 0/0:80,0:79:99:0,115,1751 0/0:79,0:74:72.05:0,72,1830 0/0:67,0:67:44.89:0,45,1371 0/0:58,0:57:38.24:0,38,1028 0/0:39,1:40:32.92:0,33,938 0/0:66,0:66:88.23:0,88,1401 0/0:49,0:49:33.30:0,33,991 0/0:42,16:58:0.69:8,0,1084 0/0:175,0:175:38.35:0,38,2951 0/0:35,14:49:24.40:0,24,975 0/0:64,0:64:78.44:0,78,1290 0/0:48,0:48:34.37:0,34,1110 0/0:93,1:94:59.85:0,60,1933 0/0:120,0:120:99:0,240,3133 0/0:94,0:94:15.61:0,16,1524 0/0:91,0:91:99:0,116,2104 0/0:117,0:117:94.83:0,95,2338 0/0:67,0:64:67.77:0,68,1388 0/0:82,0:80:99:0,148,1807 0/0:75,0:71:99:0,121,1810 0/0:49,0:49:21.43:0,21,985 0/1:49,0:49:41.31:41,0,878 0/1:63,0:63:33.38:33,0,1003 0/0:54,0:54:48.30:0,48,1252 0/0:64,0:64:37.63:0,38,1289 0/0:104,0:104:99:0,207,2551 0/0:87,0:87:99:0,113,1815 0/1:48,0:48:44.20:44,0,838 0/0:64,0:64:97.67:0,98,1408 0/0:60,0:60:69.66:0,70,1302 0/1:64,23:87:12.40:12,0,1330 0/1:66,1:67:64.39:64,0,1133 0/0:67,0:67:42.78:0,43,1224 0/1:48,0:48:29.93:30,0,809 0/0:40,0:39:63.21:0,63,910 0/0:64,0:64:47.44:0,47,1162 14 70171372 . C T 228.47 . AC=10;AF=0.119;AN=84;BaseQRankSum=-16.625;DP=1922;Dels=0.00;FS=524.925;HRun=2;HaplotypeScore=0.9702;InbreedingCoeff=-0.1562;MQ=59.04;MQ0=0;MQRankSum=-1.242;QD=0.64;ReadPosRankSum=-12.138 GT:AD:DP:GQ:PL 0/1:22,6:28:26.73:27,0,508 0/0:23,14:37:26.75:0,27,686 0/0:22,7:29:25.82:0,26,676 0/0:76,19:95:99:0,118,2170 0/0:48,13:61:62.56:0,63,1585 0/0:54,16:70:44.67:0,45,1556 0/0:44,11:55:48.39:0,48,1287 0/0:40,13:53:87.27:0,87,1149 0/0:40,12:52:2.83:0,0,905 0/0:22,9:31:19.15:0,19,499 0/0:28,5:33:66.18:0,66,807 0/1:27,9:36:20.30:20,0,664 0/1:29,7:36:15.73:16,0,646 0/1:23,13:36:17.94:18,0,523 0/0:90,22:112:88.77:0,89,2475 0/0:27,12:39:30.94:0,31,744 0/0:29,11:40:32.83:0,33,866 0/1:19,13:32:68.95:69,0,384 0/0:30,8:38:75.21:0,75,926 0/0:52,14:66:61.47:0,61,1245 0/1:40,15:55:96.97:97,0,1139 0/0:36,8:44:71.43:0,71,1171 0/0:78,24:102:99:0,165,2405 0/0:49,11:60:74.96:0,75,1429 0/0:39,13:52:64.69:0,65,1131 0/0:45,8:54:94.67:0,95,1526 0/0:27,15:42:48.48:0,48,812 0/1:14,7:21:18.96:19,0,355 0/0:28,11:39:4.87:0,5,634 0/0:34,8:42:72.20:0,72,891 0/0:23,7:30:23.48:0,23,574 0/0:40,12:52:74.10:0,74,1214 0/0:27,9:36:62.20:0,62,743 0/1:19,7:26:25.93:26,0,440 0/0:31,5:36:40.82:0,41,832 0/0:24,8:32:50.62:0,51,584 0/1:32,12:44:44.34:44,0,849 0/0:25,7:32:8.87:0,9,645 0/1:31,10:41:22.99:23,0,905 0/0:33,8:41:19.25:0,19,1022 0/0:14,5:19:15.42:0,15,436 0/0:32,11:43:0.36:0,0,823 14 70171418 . T C 831.40 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.210;DP=2242;Dels=0.00;FS=13.357;HRun=0;HaplotypeScore=1.9738;InbreedingCoeff=-0.0120;MQ=59.11;MQ0=0;MQRankSum=0.778;QD=11.71;ReadPosRankSum=1.134 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,138,1634 0/0:37,0:37:93.29:0,93,1169 0/0:34,0:34:93.26:0,93,1102 0/0:102,0:102:99:0,292,3505 0/0:70,0:70:99:0,193,2352 0/0:61,0:61:99:0,165,2080 0/1:39,32:71:99:878,0,1159 0/0:61,0:61:99:0,178,2143 0/0:39,0:39:99:0,99,1202 0/0:42,0:43:99:0,123,1469 0/0:45,0:45:99:0,129,1545 0/0:48,0:48:99:0,129,1541 0/0:32,0:32:84.25:0,84,1011 0/0:40,0:40:99:0,108,1309 0/0:134,0:135:99:0,370,4422 0/0:41,0:41:99:0,117,1359 0/0:50,0:50:99:0,147,1762 0/0:46,0:46:99:0,129,1547 0/0:63,0:64:99:0,180,2121 0/0:64,0:65:99:0,184,2187 0/0:69,0:69:99:0,190,2240 0/0:49,0:49:99:0,135,1638 0/0:115,1:116:99:0,319,3883 0/0:65,0:65:99:0,190,2307 0/0:63,0:63:99:0,178,2170 0/0:56,0:56:99:0,144,1801 0/0:45,0:45:99:0,129,1552 0/0:50,0:50:99:0,132,1572 0/0:32,0:32:93.27:0,93,1099 0/0:46,0:46:99:0,132,1579 0/0:32,0:33:93.26:0,93,1098 0/0:49,0:49:99:0,138,1647 0/0:38,0:38:99:0,108,1263 0/0:41,0:41:99:0,114,1380 0/0:38,0:39:99:0,105,1260 0/0:44,0:44:99:0,126,1513 0/0:40,0:40:99:0,120,1443 0/0:49,0:49:99:0,138,1611 0/0:52,0:52:99:0,147,1710 0/0:60,0:60:99:0,172,2070 0/0:36,0:36:99:0,108,1286 0/0:37,0:37:99:0,102,1172 14 70234885 . T G 559.79 . AC=14;AF=0.167;AN=84;BaseQRankSum=-31.023;DP=3299;Dels=0.00;FS=296.162;HRun=1;HaplotypeScore=4.7492;InbreedingCoeff=-0.2195;MQ=58.02;MQ0=0;MQRankSum=3.401;QD=0.58;ReadPosRankSum=-4.402 GT:AD:DP:GQ:PL 0/0:20,28:48:28.46:0,28,572 0/0:33,23:56:53.75:0,54,898 0/0:23,33:56:6.89:0,7,550 0/0:68,68:137:78.62:0,79,1882 0/1:67,65:135:16.14:16,0,1587 0/0:75,48:123:52.20:0,52,1853 0/0:54,51:106:91.66:0,92,1271 0/0:67,44:113:54.42:0,54,1292 0/0:33,26:60:7.32:0,7,833 0/1:28,30:58:99:111,0,662 0/0:28,29:57:14.78:0,15,618 0/0:43,33:76:25.77:0,26,1148 0/1:29,35:64:3.20:3,0,812 0/1:36,29:65:11.89:12,0,988 0/0:96,86:182:2.04:2,0,2591 0/1:27,30:57:37.14:37,0,692 0/1:38,36:74:27.03:27,0,931 0/0:34,22:56:42.94:0,43,1010 0/1:36,25:62:99:137,0,1042 0/0:57,38:96:13.94:0,14,1322 0/0:30,28:59:2.37:1,0,773 0/0:27,24:51:43.44:0,43,696 0/0:80,67:149:99:0,104,2305 0/0:73,49:122:99:0,150,1956 0/0:74,52:127:99:0,129,1874 0/0:64,61:125:43.35:0,43,1606 0/0:23,17:40:9.97:0,10,619 0/0:26,25:51:55.02:0,55,844 0/0:26,24:50:35:0,35,644 0/1:22,34:56:95.55:96,0,540 0/0:29,41:70:20.39:0,20,762 0/0:42,33:75:24.48:0,24,1094 0/0:27,35:62:17.97:0,18,740 0/0:25,27:52:17.38:0,17,750 0/1:40,31:71:14.46:14,0,1022 0/0:39,31:70:60.87:0,61,1086 0/1:36,28:65:99:111,0,999 0/1:37,34:71:30.51:31,0,949 0/1:26,37:63:41.88:42,0,670 0/1:26,31:57:6.62:7,0,652 0/1:30,31:61:58.07:58,0,612 0/0:44,25:69:35.68:0,36,1185 14 70245900 . G T 718.95 . AC=2;AF=0.024;AN=84;BaseQRankSum=6.053;DP=1502;Dels=0.00;FS=16.316;HRun=1;HaplotypeScore=1.4868;InbreedingCoeff=-0.0244;MQ=58.52;MQ0=0;MQRankSum=-0.420;QD=12.19;ReadPosRankSum=-1.555 GT:AD:DP:GQ:PL 0/0:45,0:46:99:0,117,1296 0/0:36,0:36:99:0,105,1149 0/0:26,0:26:75.18:0,75,814 0/0:28,0:28:78.20:0,78,886 0/0:24,0:24:69.20:0,69,810 0/0:24,0:24:60.12:0,60,693 0/0:19,0:19:45.13:0,45,538 0/0:14,0:14:42.10:0,42,461 0/0:42,0:42:99:0,108,1216 0/0:43,0:43:99:0,114,1242 0/0:17,0:17:48.11:0,48,521 0/0:34,0:34:93.23:0,93,1009 0/0:22,0:22:66.14:0,66,699 0/0:22,0:22:51.09:0,51,536 0/0:130,0:131:99:0,328,3723 0/0:35,0:35:99:0,99,1083 0/0:42,0:42:99:0,114,1294 0/0:42,1:43:99:0,114,1252 0/0:48,0:48:99:0,126,1350 0/0:64,0:64:99:0,165,1883 0/0:43,0:43:99:0,111,1208 0/0:36,0:36:96.20:0,96,1039 0/0:30,0:30:75.22:0,75,893 0/0:20,0:20:51.14:0,51,597 0/0:16,0:16:39.10:0,39,451 0/0:26,0:26:60.13:0,60,686 0/0:35,0:36:90.24:0,90,1038 0/0:32,0:32:81.20:0,81,878 0/0:32,0:32:90.18:0,90,947 0/0:23,0:24:63.16:0,63,721 0/0:33,0:33:84.19:0,84,914 0/0:49,0:50:99:0,120,1303 0/0:31,0:31:81.19:0,81,900 0/1:15,16:31:99:475,0,351 0/1:15,13:28:99:306,0,282 0/0:46,0:46:99:0,126,1400 0/0:59,0:59:99:0,156,1703 0/0:32,0:32:87.21:0,87,952 0/0:33,0:33:87.18:0,87,928 0/0:35,0:35:99:0,102,1079 0/0:33,0:33:93.19:0,93,1001 0/0:36,0:36:99:0,99,1084 14 70246006 . G C 1313.01 . 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A G 2423.93 . 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C T 1088.22 . 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G A 480.91 . 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C T 21275.51 . AC=14;AF=0.167;AN=84;BaseQRankSum=9.359;DP=4355;DS;Dels=0.00;FS=7.750;HRun=0;HaplotypeScore=2.2124;InbreedingCoeff=0.1429;MQ=59.19;MQ0=0;MQRankSum=1.133;QD=17.54;ReadPosRankSum=3.174 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,135,1616 0/0:67,0:67:99:0,174,2068 0/0:77,0:77:99:0,217,2541 0/0:230,0:230:99:0,581,7521 0/1:92,93:185:99:2495,0,2738 0/1:68,50:119:99:1468,0,1805 0/0:157,0:157:99:0,388,5059 0/1:67,60:127:99:1635,0,1787 0/0:93,0:93:99:0,238,2889 0/0:78,0:78:99:0,217,2587 0/0:73,0:73:99:0,196,2331 0/1:42,29:71:99:772,0,1173 1/1:0,64:64:99:2077,166,0 0/0:93,0:93:99:0,241,2930 1/1:0,242:242:99:7763,614,0 0/1:38,29:67:99:801,0,1025 0/1:41,41:82:99:1208,0,1044 0/0:60,0:60:99:0,162,1953 0/0:148,1:149:99:0,367,4359 0/0:130,0:131:99:0,325,3968 0/0:136,0:137:99:0,343,4099 0/0:85,0:86:99:0,223,2654 0/0:187,1:189:99:0,433,5926 0/0:121,0:121:99:0,298,3862 0/0:142,1:143:99:0,328,4608 0/0:111,1:112:99:0,271,3440 0/1:39,31:70:99:847,0,879 0/0:73,0:73:99:0,202,2362 0/1:34,22:56:99:569,0,932 0/0:77,0:77:99:0,199,2387 0/0:77,0:77:99:0,217,2525 0/0:166,0:166:99:0,418,5028 0/0:94,0:94:99:0,253,2987 0/0:66,0:66:99:0,168,2021 0/0:69,1:70:99:0,146,2125 0/0:79,0:79:99:0,226,2684 0/0:145,0:145:99:0,364,4300 0/0:78,1:79:99:0,174,2331 0/0:97,0:97:99:0,247,2953 0/1:29,35:64:99:1024,0,757 0/0:72,0:72:99:0,187,2240 0/1:43,23:66:99:615,0,1252 14 71522264 . C A 375.30 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.631;DP=5927;DS;Dels=0.00;FS=3.428;HRun=0;HaplotypeScore=3.2063;InbreedingCoeff=-0.0120;MQ=59.58;MQ0=0;MQRankSum=1.676;QD=3.10;ReadPosRankSum=2.031 GT:AD:DP:GQ:PL 0/0:85,0:85:99:0,211,2683 0/0:112,0:112:99:0,262,3387 0/0:92,1:93:99:0,192,2853 0/0:243,0:243:99:0,590,7911 0/0:247,0:247:99:0,578,7942 0/0:216,0:216:99:0,542,7309 0/0:217,0:217:99:0,518,7058 0/0:222,0:222:99:0,548,7391 0/0:109,0:109:99:0,253,3317 0/0:109,0:109:99:0,271,3477 0/1:96,24:121:99:422,0,2740 0/0:119,0:119:99:0,295,3760 0/0:126,0:126:99:0,310,3984 0/0:78,0:79:99:0,196,2488 0/0:237,1:238:99:0,588,7773 0/0:68,0:68:99:0,166,2113 0/0:102,0:102:99:0,247,3183 0/0:124,0:124:99:0,313,3973 0/0:171,0:172:99:0,388,5103 0/0:189,0:189:99:0,457,5905 0/0:136,0:136:99:0,328,4243 0/0:88,0:88:99:0,217,2787 0/0:237,0:237:99:0,590,8010 0/0:225,1:226:99:0,516,7341 0/0:220,1:221:99:0,521,7454 0/0:218,0:218:99:0,539,7288 0/0:94,0:94:99:0,226,2937 0/0:135,0:135:99:0,349,4393 0/0:114,0:114:99:0,265,3462 0/0:119,0:119:99:0,283,3602 0/0:78,0:78:99:0,193,2433 0/0:207,0:207:99:0,482,6311 0/0:131,0:131:99:0,298,3914 0/0:77,0:77:99:0,190,2411 0/0:78,0:78:99:0,184,2371 0/0:128,0:128:99:0,322,4130 0/0:125,1:126:99:0,262,3766 0/0:115,0:115:99:0,271,3524 0/0:98,0:98:99:0,250,3157 0/0:118,0:118:99:0,295,3774 0/0:99,0:99:99:0,250,3205 0/0:93,0:93:99:0,232,2999 14 71555091 . T C 501.32 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.353;DP=2093;Dels=0.00;FS=5.554;HRun=0;HaplotypeScore=0.8100;InbreedingCoeff=-0.0120;MQ=59.41;MQ0=0;MQRankSum=-0.106;QD=12.85;ReadPosRankSum=0.343 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,114,1415 0/0:36,0:36:90.28:0,90,1119 0/0:31,0:31:81.24:0,81,999 0/0:100,0:100:99:0,241,3081 0/0:61,0:61:99:0,147,1915 0/0:65,0:65:99:0,156,2045 0/0:47,0:47:99:0,117,1521 0/0:56,0:56:99:0,138,1787 0/0:43,0:43:99:0,105,1321 0/0:40,1:41:68.34:0,68,1233 0/0:40,0:40:99:0,102,1265 0/0:47,0:47:99:0,126,1553 0/0:47,0:47:99:0,120,1491 0/0:33,0:33:90.24:0,90,1080 0/0:161,0:161:99:0,406,4997 0/0:20,0:20:54.17:0,54,666 0/0:35,0:35:90.28:0,90,1130 0/0:35,0:35:90.28:0,90,1118 0/0:67,0:67:99:0,175,2155 0/0:60,0:60:99:0,166,2045 0/0:70,0:70:99:0,172,2170 0/0:48,0:48:99:0,123,1546 0/0:94,0:94:99:0,238,3025 0/0:47,0:47:99:0,120,1539 0/0:63,0:63:99:0,147,1923 0/0:56,0:56:99:0,144,1825 0/0:28,0:28:81.22:0,81,946 0/0:40,0:40:99:0,108,1337 0/0:33,0:33:90.28:0,90,1122 0/0:41,0:41:99:0,108,1315 0/0:41,0:41:99:0,111,1353 0/0:47,0:47:99:0,132,1607 0/0:45,0:45:99:0,111,1399 0/0:48,0:48:99:0,141,1708 0/0:34,0:34:93.28:0,93,1132 0/1:19,20:39:99:548,0,440 0/0:42,0:42:99:0,108,1348 0/0:43,0:44:99:0,111,1372 0/0:38,0:38:99:0,102,1247 0/0:50,0:50:99:0,141,1719 0/0:31,0:31:84.26:0,84,1030 0/0:45,0:45:99:0,117,1454 14 72169130 . T C 3709.32 . AC=4;AF=0.048;AN=84;BaseQRankSum=5.782;DP=3826;DS;Dels=0.00;FS=7.954;HRun=0;HaplotypeScore=1.7466;InbreedingCoeff=-0.0500;MQ=59.34;MQ0=0;MQRankSum=1.842;QD=14.66;ReadPosRankSum=-1.287 GT:AD:DP:GQ:PL 0/0:79,0:79:99:0,214,2642 0/0:73,0:73:99:0,199,2439 0/0:55,0:55:99:0,159,1924 0/0:169,0:170:99:0,439,5626 0/0:146,0:146:99:0,385,4940 0/0:134,0:134:99:0,343,4461 0/0:108,0:108:99:0,298,3866 0/0:110,0:112:99:0,286,3660 0/0:71,0:71:99:0,205,2449 0/0:65,0:65:99:0,172,2142 0/0:69,0:69:99:0,199,2397 0/0:58,0:58:99:0,163,2000 0/0:55,0:55:99:0,162,1956 0/0:64,0:64:99:0,181,2187 0/0:246,0:247:99:0,629,7793 0/0:60,0:60:99:0,178,2149 0/0:78,0:78:99:0,217,2657 0/0:64,0:64:99:0,178,2157 0/0:131,0:131:99:0,343,4224 0/0:140,1:141:99:0,331,4479 0/0:123,0:123:99:0,337,4152 0/0:81,0:81:99:0,208,2553 0/0:147,0:147:99:0,382,4907 0/0:104,0:104:99:0,271,3494 0/0:122,0:122:99:0,325,4153 0/0:114,0:114:99:0,292,3786 0/0:54,0:55:99:0,147,1782 0/0:63,0:63:99:0,172,2095 0/0:59,0:59:99:0,156,1940 0/1:35,33:68:99:987,0,984 0/0:53,0:53:99:0,153,1905 0/0:113,0:113:99:0,295,3693 0/1:33,30:63:99:862,0,886 0/0:69,0:69:99:0,193,2366 0/0:79,0:79:99:0,229,2783 0/0:75,0:75:99:0,199,2471 0/0:97,0:98:99:0,268,3254 0/0:90,0:90:99:0,247,3018 0/0:87,0:87:99:0,247,3004 0/1:35,33:68:99:1030,0,921 0/0:61,0:61:99:0,181,2169 0/1:27,27:54:99:831,0,745 14 72169152 . A G 240.95 . 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G GAA 56910.06 . 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C T 1788.56 . 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A C 1345.78 . 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C T 123.06 . 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T G 18665.66 . AC=45;AF=0.536;AN=84;BaseQRankSum=14.375;DP=1102;Dels=0.00;FS=1.824;HRun=1;HaplotypeScore=1.3598;InbreedingCoeff=-0.0042;MQ=58.47;MQ0=0;MQRankSum=-2.000;QD=21.21;ReadPosRankSum=-2.096 GT:AD:DP:GQ:PL 0/1:11,11:22:99:250,0,331 0/0:16,0:16:45.14:0,45,548 0/0:23,0:23:63.19:0,63,756 0/1:47,28:75:99:822,0,1299 1/1:0,59:59:99:2091,159,0 0/1:21,5:26:99:123,0,642 0/1:18,19:37:99:613,0,488 0/1:10,28:38:99:789,0,243 1/1:0,17:17:45.14:569,45,0 1/1:0,17:17:51.16:638,51,0 1/1:0,13:13:33.10:396,33,0 0/0:24,0:24:63.18:0,63,760 0/0:15,0:15:39.12:0,39,473 0/0:22,0:22:63.18:0,63,739 0/1:26,19:45:99:530,0,713 0/0:12,0:19:33.10:0,33,403 1/1:0,18:18:54.17:682,54,0 1/1:0,16:16:45.13:554,45,0 1/1:0,17:17:48.12:584,48,0 1/1:0,29:29:78.24:969,78,0 0/1:14,15:29:99:441,0,409 0/1:14,15:29:99:466,0,389 0/0:56,0:56:99:0,150,1812 0/1:17,17:34:99:575,0,459 1/1:0,33:33:93.29:1210,93,0 0/1:17,11:28:99:360,0,482 0/1:6,11:17:99:369,0,107 0/1:7,9:16:99:273,0,187 0/1:8,7:15:99:184,0,252 1/1:0,25:25:60.18:764,60,0 0/1:10,12:22:99:368,0,284 0/0:34,1:35:99:0,99,1187 0/1:18,17:35:99:459,0,482 0/1:6,12:18:99:375,0,140 0/0:9,0:12:27.07:0,27,306 1/1:0,16:16:45.14:563,45,0 1/1:1,20:21:57.17:694,57,0 0/1:3,20:23:15.92:646,0,16 0/1:12,12:24:99:385,0,331 0/1:12,12:24:99:358,0,325 0/1:12,5:17:99:141,0,317 0/1:10,15:25:99:422,0,287 14 73730937 . C T 977.09 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.252;DP=2609;Dels=0.00;FS=2.085;HRun=0;HaplotypeScore=2.6540;InbreedingCoeff=-0.0244;MQ=58.90;MQ0=1;MQRankSum=0.085;QD=11.77;ReadPosRankSum=-0.956 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,135,1550 0/0:54,0:55:99:0,132,1506 0/0:45,0:45:99:0,111,1275 0/0:145,0:145:99:0,376,4666 0/0:116,0:116:99:0,310,3807 0/0:85,0:85:99:0,214,2603 0/0:73,0:74:99:0,171,2104 0/0:92,1:93:99:0,231,3043 0/0:40,0:41:99:0,108,1161 0/0:27,0:27:69.14:0,69,733 0/0:45,0:45:99:0,126,1404 0/0:38,0:38:99:0,105,1200 0/0:34,0:34:96.26:0,96,1094 0/0:46,0:46:99:0,117,1303 0/0:181,1:182:99:0,413,4923 0/0:54,0:54:99:0,147,1646 0/0:32,0:32:90.24:0,90,1014 0/0:38,0:38:99:0,105,1142 0/0:70,0:70:99:0,171,1902 0/0:73,0:73:99:0,189,2156 0/0:77,0:77:99:0,211,2348 0/0:56,0:56:99:0,150,1673 0/0:151,0:152:99:0,385,4807 0/0:81,0:82:99:0,202,2490 0/0:85,0:85:99:0,229,2746 0/0:46,0:46:99:0,114,1425 0/0:36,0:36:93.19:0,93,1023 0/0:52,0:52:99:0,141,1571 0/0:44,0:44:99:0,102,1195 0/0:43,0:43:99:0,123,1348 0/0:37,0:37:99:0,108,1212 0/0:94,0:94:99:0,235,2738 0/0:46,0:46:99:0,126,1412 0/0:55,0:55:99:0,147,1705 0/0:43,0:43:99:0,108,1237 0/0:43,0:43:99:0,111,1241 0/0:59,0:60:99:0,150,1670 0/0:33,0:33:87.21:0,87,951 0/0:45,0:45:99:0,114,1255 0/1:20,20:40:99:594,0,461 0/1:25,18:43:99:446,0,611 0/0:50,0:50:99:0,135,1522 14 73731012 . C T 224.62 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.024;DP=1715;Dels=0.00;FS=1.662;HRun=0;HaplotypeScore=1.0863;InbreedingCoeff=-0.0120;MQ=58.37;MQ0=0;MQRankSum=0.284;QD=11.23;ReadPosRankSum=-0.774 GT:AD:DP:GQ:PL 0/0:30,0:31:87.21:0,87,952 0/0:44,0:44:99:0,120,1309 0/0:21,0:21:54.12:0,54,578 0/0:85,0:85:99:0,238,2797 0/0:81,0:81:99:0,229,2674 0/0:56,0:57:99:0,150,1746 0/0:40,0:40:99:0,111,1278 0/0:51,0:51:99:0,153,1766 0/0:20,0:20:54.13:0,54,584 0/0:18,0:18:51.13:0,51,549 0/0:25,0:25:69.16:0,69,749 0/0:22,0:22:63.14:0,63,699 0/0:21,0:21:57.13:0,57,628 0/0:30,0:30:90.20:0,90,986 0/0:107,0:108:99:0,301,3322 0/0:34,0:34:99:0,99,1109 0/0:19,0:19:51.13:0,51,574 0/0:34,0:34:96.22:0,96,1045 0/0:55,0:56:99:0,144,1591 0/0:57,0:57:99:0,159,1756 0/0:48,0:49:99:0,138,1542 0/0:43,0:44:99:0,117,1268 0/0:108,0:108:99:0,313,3677 0/0:40,0:40:99:0,108,1252 0/0:63,0:63:99:0,181,2147 0/0:37,0:37:99:0,102,1243 0/0:19,0:19:54.15:0,54,602 0/0:33,0:33:93.23:0,93,1015 0/0:27,0:27:72.19:0,72,806 0/0:25,0:25:66.18:0,66,752 0/0:23,0:23:63.17:0,63,693 0/0:71,0:71:99:0,196,2196 0/0:38,0:38:99:0,99,1082 0/0:31,0:31:87.20:0,87,933 0/0:36,0:36:99:0,99,1070 0/0:30,0:30:90.23:0,90,1004 0/0:61,0:62:99:0,168,1875 0/0:26,0:26:66.15:0,66,721 0/0:24,0:24:69.16:0,69,737 0/0:29,0:29:84.20:0,84,918 0/1:11,9:20:99:271,0,260 0/0:26,0:26:78.19:0,78,846 14 73733488 . C A 132.57 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.089;DP=1270;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.6949;InbreedingCoeff=-0.0121;MQ=58.79;MQ0=0;MQRankSum=0.146;QD=7.80;ReadPosRankSum=0.551 GT:AD:DP:GQ:PL 0/0:29,0:29:75.24:0,75,971 0/0:23,0:24:63.17:0,63,782 0/0:18,0:18:51.16:0,51,642 0/0:39,0:39:99:0,102,1390 0/0:40,0:40:99:0,105,1418 0/0:41,0:41:99:0,99,1336 0/0:26,0:26:66.21:0,66,879 0/0:24,0:24:66.20:0,66,859 0/0:21,0:21:57.17:0,57,692 0/0:19,0:19:57.18:0,57,715 0/0:25,0:25:75.23:0,75,938 0/0:27,0:27:78.24:0,78,981 0/0:33,0:33:93.29:0,93,1160 0/0:24,1:25:66.21:0,66,846 0/0:114,0:114:99:0,289,3599 0/0:32,0:32:93.26:0,93,1155 0/0:27,0:27:75.23:0,75,940 0/0:15,0:15:42.10:0,42,518 0/0:29,0:29:78.23:0,78,963 0/0:38,0:38:99:0,99,1274 0/0:30,0:30:84.23:0,84,1012 0/0:15,0:15:45.14:0,45,561 0/0:35,0:35:93.30:0,93,1259 0/0:27,0:27:75.25:0,75,1018 0/0:35,0:35:87.27:0,87,1151 0/1:10,7:17:99:179,0,293 0/0:24,0:24:60.20:0,60,787 0/0:31,0:31:84.23:0,84,1027 0/0:16,0:16:42.13:0,42,529 0/0:29,0:29:78.21:0,78,952 0/0:22,0:22:63.20:0,63,794 0/0:39,0:39:96.31:0,96,1247 0/0:22,0:22:60.19:0,60,767 0/0:28,0:28:81.21:0,81,981 0/0:38,0:38:99:0,102,1305 0/0:34,0:34:81.25:0,81,1055 0/0:39,0:39:99:0,99,1195 0/0:38,0:38:99:0,102,1288 0/0:21,0:21:54.16:0,54,669 0/0:28,0:28:75.22:0,75,938 0/0:34,0:34:87.27:0,87,1132 0/0:22,0:22:60.18:0,60,752 14 73735366 . C T 9231.31 . AC=18;AF=0.214;AN=84;BaseQRankSum=7.246;DP=1548;Dels=0.00;FS=0.773;HRun=0;HaplotypeScore=1.1917;InbreedingCoeff=0.0101;MQ=59.28;MQ0=0;MQRankSum=0.849;QD=16.11;ReadPosRankSum=-0.147 GT:AD:DP:GQ:PL 0/1:14,12:26:99:357,0,301 0/0:37,0:37:99:0,105,1182 0/0:28,0:28:75.19:0,75,830 0/1:32,34:66:99:920,0,946 1/1:0,61:62:99:2019,171,0 0/0:50,0:50:99:0,144,1719 0/0:36,0:36:99:0,105,1257 0/0:50,0:50:99:0,147,1674 0/0:31,0:31:84.22:0,84,943 0/1:16,14:31:99:399,0,385 0/0:30,0:30:84.21:0,84,923 0/0:26,0:26:75.17:0,75,831 0/0:17,0:17:48.12:0,48,536 0/0:30,0:30:84.22:0,84,931 0/0:76,0:77:99:0,208,2343 0/1:17,13:30:99:377,0,425 0/0:32,0:32:90.23:0,90,992 0/1:16,16:32:99:465,0,408 0/0:40,0:40:99:0,111,1227 0/0:50,0:50:99:0,144,1593 0/1:23,24:47:99:657,0,572 0/1:14,10:24:99:212,0,361 0/0:81,0:81:99:0,232,2790 0/0:31,0:31:84.23:0,84,1002 0/1:19,27:46:99:763,0,504 0/0:41,0:41:99:0,114,1359 0/0:23,0:23:66.17:0,66,737 0/0:24,0:24:69.18:0,69,773 0/1:16,16:32:99:427,0,415 0/1:20,19:41:99:561,0,524 0/1:17,23:40:99:625,0,437 0/0:46,0:46:99:0,120,1340 0/0:46,0:46:99:0,126,1401 0/1:22,13:35:99:343,0,598 0/1:8,5:13:99:141,0,216 1/1:1,26:27:44.62:816,45,0 0/0:34,0:34:99:0,99,1057 0/1:14,7:21:99:150,0,395 0/0:28,0:28:81.20:0,81,903 0/0:30,0:30:87.22:0,87,978 0/0:23,1:24:28.35:0,28,641 0/0:33,0:33:93.24:0,93,1056 14 73739226 . C G 1438.93 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.189;DP=4774;DS;Dels=0.00;FS=2.913;HRun=0;HaplotypeScore=4.2151;InbreedingCoeff=-0.0244;MQ=59.24;MQ0=1;MQRankSum=0.236;QD=11.24;ReadPosRankSum=-0.203 GT:AD:DP:GQ:PL 0/0:66,0:66:99:0,187,2294 0/1:27,30:57:99:783,0,720 0/1:40,29:71:99:718,0,1172 0/0:232,0:233:99:0,629,8066 0/0:244,0:244:99:0,659,8604 0/0:232,1:233:99:0,579,7926 0/0:246,0:246:99:0,662,8601 0/0:227,0:227:99:0,623,8109 0/0:74,0:74:99:0,205,2508 0/0:63,0:64:99:0,178,2173 0/0:65,0:65:99:0,172,2138 0/0:62,0:62:99:0,175,2172 0/0:48,0:48:99:0,132,1591 0/0:72,0:72:99:0,214,2578 0/0:217,0:219:99:0,605,7336 0/0:75,0:75:99:0,214,2634 0/0:58,0:58:99:0,159,1997 0/0:79,0:79:99:0,226,2793 0/0:119,0:119:99:0,310,3738 0/0:160,0:161:99:0,427,5348 0/0:140,0:142:99:0,394,4698 0/0:82,0:83:99:0,229,2829 0/0:243,1:244:99:0,608,8328 0/0:207,0:207:99:0,539,6991 0/0:240,0:241:99:0,626,8275 0/0:190,0:190:99:0,512,6693 0/0:55,0:55:99:0,150,1840 0/0:56,0:56:99:0,150,1843 0/0:60,0:60:99:0,172,2149 0/0:69,0:69:99:0,184,2262 0/0:57,0:57:99:0,165,2048 0/0:139,0:139:99:0,385,4847 0/0:110,0:110:99:0,313,3835 0/0:72,0:72:99:0,202,2511 0/0:69,0:69:99:0,187,2330 0/0:70,0:70:99:0,184,2239 0/0:127,0:130:99:0,334,4020 0/0:61,0:61:99:0,168,2021 0/0:57,0:57:99:0,162,2010 0/0:69,0:69:99:0,199,2434 0/0:70,0:70:99:0,190,2331 0/0:50,0:50:99:0,147,1825 14 73961982 . C T 2689.10 . AC=2;AF=0.024;AN=84;BaseQRankSum=-10.780;DP=5787;DS;Dels=0.00;FS=1.733;HRun=1;HaplotypeScore=1.9846;InbreedingCoeff=-0.0244;MQ=59.52;MQ0=0;MQRankSum=0.228;QD=14.15;ReadPosRankSum=0.083 GT:AD:DP:GQ:PL 0/0:112,0:112:99:0,298,3747 0/0:104,0:104:99:0,280,3549 0/0:90,0:90:99:0,241,3088 0/0:216,0:216:99:0,599,7964 0/0:221,0:221:99:0,596,8069 0/0:218,0:218:99:0,575,7776 0/0:218,1:220:99:0,566,8036 0/0:225,0:225:99:0,599,8049 0/0:106,0:106:99:0,304,3874 0/0:106,0:106:99:0,271,3473 0/1:54,56:110:99:1574,0,1658 0/0:115,0:116:99:0,319,3980 0/0:101,0:101:99:0,274,3520 0/0:87,0:87:99:0,232,2961 0/0:248,1:249:99:0,683,8652 0/1:40,40:80:99:1177,0,1181 0/0:127,0:127:99:0,355,4518 0/0:124,0:124:99:0,331,4201 0/0:145,0:145:99:0,385,4764 0/0:140,0:140:99:0,385,4939 0/0:154,1:157:99:0,397,5021 0/0:71,0:72:99:0,193,2460 0/0:212,0:212:99:0,581,7831 0/0:230,0:230:99:0,599,8033 0/0:226,0:226:99:0,596,8062 0/0:228,0:228:99:0,590,8036 0/0:94,0:94:99:0,268,3403 0/0:137,0:137:99:0,355,4547 0/0:97,0:97:99:0,277,3493 0/0:112,0:112:99:0,313,3952 0/0:93,1:94:99:0,265,3362 0/0:145,0:145:99:0,361,4708 0/0:91,0:91:99:0,244,3150 0/0:99,0:99:99:0,268,3423 0/0:113,0:113:99:0,313,4049 0/0:124,0:124:99:0,331,4231 0/0:124,0:124:99:0,334,4095 0/0:108,0:108:99:0,295,3717 0/0:114,0:114:99:0,325,4101 0/0:111,0:111:99:0,310,3914 0/0:84,0:84:99:0,235,2963 0/0:118,0:118:99:0,328,4129 14 74060487 . G C 8747.38 . AC=4;AF=0.048;AN=84;BaseQRankSum=4.919;DP=4389;DS;Dels=0.00;FS=2.937;HRun=2;HaplotypeScore=1.7584;InbreedingCoeff=-0.0500;MQ=58.35;MQ0=1;MQRankSum=2.545;QD=15.21;ReadPosRankSum=0.241 GT:AD:DP:GQ:PL 0/0:93,0:93:99:0,268,3356 0/0:90,0:90:99:0,247,3159 0/0:62,0:62:99:0,184,2290 0/1:118,105:223:99:3327,0,3906 0/1:115,97:213:99:3102,0,3697 0/0:179,0:179:99:0,500,6666 0/0:177,0:177:99:0,509,6745 0/0:167,0:167:99:0,472,6219 0/0:57,0:57:99:0,165,2015 0/0:48,0:48:99:0,141,1719 0/0:104,0:104:99:0,304,3800 0/0:60,0:60:99:0,171,2124 0/0:44,0:44:99:0,123,1505 0/0:89,0:89:99:0,259,3256 0/0:205,0:205:99:0,545,6731 0/0:57,0:57:99:0,165,2020 0/0:68,0:68:99:0,199,2519 0/0:61,0:62:99:0,175,2152 0/0:55,0:56:99:0,159,1824 0/0:53,0:54:99:0,159,1874 0/0:134,0:134:99:0,376,4588 0/0:90,0:90:99:0,244,3148 0/0:248,0:248:99:0,698,9381 0/0:184,0:185:99:0,521,7030 0/0:176,0:176:99:0,484,6446 0/0:99,0:99:99:0,286,3727 0/0:56,0:56:99:0,166,2093 0/0:58,0:58:99:0,168,2055 0/0:76,0:76:99:0,214,2712 0/1:35,43:78:99:1348,0,1037 0/1:30,31:61:99:970,0,868 0/0:134,0:134:99:0,364,4623 0/0:108,0:108:99:0,295,3731 0/0:78,0:78:99:0,226,2780 0/0:67,0:67:99:0,190,2410 0/0:100,0:100:99:0,289,3605 0/0:136,0:136:99:0,379,4657 0/0:92,0:92:99:0,268,3363 0/0:79,0:79:99:0,229,2862 0/0:78,0:78:99:0,220,2810 0/0:69,0:69:99:0,208,2605 0/0:79,0:79:99:0,223,2797 14 74060508 . C A 175.78 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.799;DP=4994;DS;Dels=0.00;FS=3.608;HRun=0;HaplotypeScore=1.8471;InbreedingCoeff=0.9551;MQ=59.55;MQ0=0;MQRankSum=-0.493;QD=17.58;ReadPosRankSum=-7.471 GT:AD:DP:GQ:PL 0/0:117,0:117:99:0,331,4179 0/0:102,0:102:99:0,268,3431 0/0:76,0:76:99:0,220,2732 0/0:250,0:250:99:0,677,9143 0/0:250,0:250:99:0,674,9177 0/0:224,0:224:99:0,587,7959 0/0:206,0:206:99:0,560,7589 0/0:215,0:215:99:0,581,7798 0/0:42,0:42:99:0,114,1475 0/0:50,1:51:99:0,107,1715 0/0:113,0:113:99:0,325,4120 0/0:51,0:51:99:0,144,1829 0/0:38,1:39:69.21:0,69,1273 0/0:123,0:123:99:0,343,4312 0/0:199,8:207:99:0,338,6453 0/0:48,2:50:99:0,100,1609 0/0:95,0:95:99:0,268,3326 0/0:55,2:57:99:0,125,1933 0/1:0,6:6:0.13:167,15,0 0/1:0,4:4:0.51:93,9,0 0/0:171,0:171:99:0,484,6111 0/0:115,0:116:99:0,316,4022 0/0:244,0:244:99:0,659,9017 0/0:236,0:236:99:0,617,8404 0/0:218,0:218:99:0,599,8165 0/0:90,2:92:99:0,172,3127 0/0:50,4:54:22.87:0,23,1698 0/0:47,2:49:69.50:0,70,1581 0/0:83,0:83:99:0,232,2901 0/0:108,0:108:99:0,304,3839 0/0:39,4:43:17.12:0,17,1267 0/0:168,0:168:99:0,445,5654 0/0:129,0:129:99:0,361,4576 0/0:99,0:99:99:0,286,3612 0/0:107,0:107:99:0,292,3696 0/0:120,0:120:99:0,328,4172 0/0:157,1:158:99:0,382,5080 0/0:105,0:105:99:0,289,3655 0/0:101,0:101:99:0,292,3663 0/0:109,0:109:99:0,313,3942 0/0:102,0:102:99:0,298,3767 0/0:103,0:103:99:0,298,3741 14 74060511 . T A 10.02 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.976;DP=5123;DS;Dels=0.00;FS=8.312;HRun=1;HaplotypeScore=1.9278;InbreedingCoeff=-0.0145;MQ=59.58;MQ0=0;MQRankSum=0.047;QD=2.51;ReadPosRankSum=-2.331 GT:AD:DP:GQ:PL 0/0:121,0:121:99:0,340,4179 0/0:106,0:106:99:0,286,3566 0/0:82,0:82:99:0,232,2828 0/0:250,0:250:99:0,686,8636 0/0:250,0:250:99:0,674,8649 0/0:225,0:225:99:0,590,7699 0/0:215,1:216:99:0,578,7416 0/0:225,0:225:99:0,593,7625 0/0:48,0:48:99:0,129,1594 0/0:54,0:54:99:0,150,1821 0/0:110,0:110:99:0,316,3874 0/0:54,0:54:99:0,147,1804 0/0:45,0:45:99:0,126,1544 0/0:128,0:128:99:0,346,4300 0/0:209,0:209:99:0,551,6831 0/0:52,0:52:99:0,138,1727 0/0:99,0:99:99:0,283,3458 0/0:60,0:60:99:0,175,2152 0/0:3,0:3:6.02:0,6,71 0/1:2,2:4:55.75:56,0,59 0/0:178,0:178:99:0,499,6141 0/0:120,0:120:99:0,331,4063 0/0:247,0:247:99:0,680,8580 0/0:238,0:238:99:0,617,7991 0/0:224,0:224:99:0,602,7677 0/0:91,0:91:99:0,241,3080 0/0:53,0:53:99:0,150,1872 0/0:52,0:52:99:0,141,1768 0/0:82,0:82:99:0,229,2786 0/0:113,0:113:99:0,313,3831 0/0:41,0:41:99:0,114,1401 0/0:170,0:172:99:0,448,5602 0/0:137,0:137:99:0,382,4672 0/0:102,0:102:99:0,298,3638 0/0:109,0:109:99:0,307,3769 0/0:121,0:121:99:0,325,4040 0/0:161,0:161:99:0,409,5097 0/0:110,0:110:99:0,307,3800 0/0:107,0:107:99:0,313,3781 0/0:113,0:113:99:0,325,3975 0/0:106,0:106:99:0,301,3711 0/0:103,0:104:99:0,295,3677 14 74060512 . A T 13.67 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.695;DP=5138;DS;Dels=0.00;FS=2.633;HRun=1;HaplotypeScore=2.0500;InbreedingCoeff=0.4834;MQ=59.58;MQ0=0;MQRankSum=1.389;QD=1.71;ReadPosRankSum=-4.666 GT:AD:DP:GQ:PL 0/0:122,0:122:99:0,343,4101 0/0:107,0:108:99:0,289,3513 0/0:84,0:84:99:0,238,2859 0/0:250,0:250:99:0,683,8278 0/0:245,0:246:99:0,671,8311 0/0:227,0:227:99:0,599,7564 0/0:219,0:219:99:0,587,7354 0/0:225,0:225:99:0,584,7194 0/0:48,0:48:99:0,126,1513 0/0:53,0:53:99:0,147,1750 0/0:112,0:112:99:0,322,3898 0/0:56,0:56:99:0,153,1841 0/0:45,1:46:91.12:0,91,1457 0/0:129,0:129:99:0,337,4098 0/0:203,3:207:99:0,512,6510 0/0:52,0:52:99:0,138,1683 0/0:98,0:98:99:0,280,3345 0/0:59,1:60:99:0,144,2011 0/1:0,2:2:1.76:31,3,0 0/1:4,2:6:47.88:48,0,122 0/0:180,0:180:99:0,502,5997 0/0:122,1:123:99:0,331,3964 0/0:244,0:244:99:0,674,8215 0/0:238,0:238:99:0,623,7782 0/0:221,1:222:99:0,593,7358 0/0:92,0:92:99:0,244,3026 0/0:50,3:53:43.81:0,44,1583 0/0:51,1:52:99:0,106,1622 0/0:83,0:83:99:0,229,2748 0/0:115,0:115:99:0,316,3825 0/0:40,1:41:78.19:0,78,1279 0/0:173,0:173:99:0,451,5465 0/0:136,0:136:99:0,376,4526 0/0:100,0:100:99:0,295,3539 0/0:109,0:109:99:0,304,3661 0/0:121,0:121:99:0,328,3963 0/0:160,0:160:99:0,403,4924 0/0:109,0:109:99:0,304,3612 0/0:110,0:110:99:0,316,3685 0/0:113,0:113:99:0,325,3875 0/0:107,0:107:99:0,301,3627 0/0:105,0:107:99:0,304,3597 14 74060513 . GCTTA G 111.18 . AC=2;AF=0.024;AN=84;BaseQRankSum=7.361;DP=5193;DS;FS=63.065;HRun=0;HaplotypeScore=522.3371;InbreedingCoeff=0.9384;MQ=59.55;MQ0=0;MQRankSum=-0.459;QD=13.90;ReadPosRankSum=-7.117 GT:AD:DP:GQ:PL 0/0:120,0:120:99:0,361,10067 0/0:111,0:111:99:0,334,9253 0/0:82,0:82:99:0,247,6965 0/0:250,0:250:99:0,750,21028 0/0:249,0:249:99:0,750,21186 0/0:226,0:222:99:0,677,19148 0/0:214,0:211:99:0,641,18051 0/0:227,0:225:99:0,677,18807 0/0:47,0:47:99:0,107,3702 0/0:53,0:53:99:0,123,4209 0/0:116,0:116:99:0,349,9718 0/0:56,0:56:99:0,169,4725 0/0:45,0:45:99:0,135,3765 0/0:129,0:129:99:0,388,10820 0/0:212,0:212:99:0,577,17420 0/0:54,0:54:99:0,134,4457 0/0:103,0:103:99:0,310,8677 0/0:64,0:64:99:0,164,5196 0/1:3,0:3:0.53:61,9,0 0/1:0,5:5:0.27:141,12,0 0/0:180,0:180:99:0,536,14980 0/0:124,0:123:99:0,370,10177 0/0:249,0:248:99:0,750,20744 0/0:236,0:235:99:0,707,19941 0/0:225,0:224:99:0,674,18887 0/0:93,0:92:99:0,280,8015 0/0:55,0:55:99:0,140,4291 0/0:55,0:55:99:0,151,4295 0/0:85,0:85:99:0,253,6940 0/0:118,0:118:99:0,352,9826 0/0:47,0:47:12.52:0,13,3397 0/0:174,0:174:99:0,521,14399 0/0:132,0:132:99:0,397,11128 0/0:101,0:101:99:0,304,8445 0/0:114,0:114:99:0,340,9270 0/0:120,0:120:99:0,358,9934 0/0:164,0:164:99:0,483,13508 0/0:111,0:111:99:0,334,9337 0/0:111,0:111:99:0,331,9367 0/0:111,0:110:99:0,334,9477 0/0:108,0:108:99:0,325,8993 0/0:114,0:114:99:0,337,9156 14 74060514 . C A 33.76 . AC=1;AF=0.012;AN=82;BaseQRankSum=-5.516;DP=5193;DS;Dels=0.00;FS=5.655;HRun=0;HaplotypeScore=3.4320;InbreedingCoeff=0.9274;MQ=59.55;MQ0=0;MQRankSum=0.354;QD=11.25;ReadPosRankSum=-5.800 GT:AD:DP:GQ:PL 0/0:119,1:120:99:0,297,4155 0/0:111,0:111:99:0,295,3753 0/0:81,0:82:99:0,232,2918 0/0:250,0:250:99:0,680,9166 0/0:249,0:249:99:0,680,9246 0/0:226,0:226:99:0,593,8074 0/0:214,0:214:99:0,578,7817 0/0:226,1:227:99:0,590,7970 0/0:46,1:47:96.69:0,97,1497 0/0:53,0:53:99:0,141,1796 0/0:116,0:116:99:0,325,4153 0/0:56,0:56:99:0,159,2011 0/0:45,0:45:99:0,126,1581 0/0:129,0:129:99:0,343,4372 0/0:211,0:212:99:0,548,7011 0/0:54,0:54:99:0,144,1848 0/0:103,0:103:99:0,289,3660 0/0:62,2:64:99:0,136,2191 0/1:0,3:3:0.51:89,9,0 ./. 0/0:180,0:180:99:0,500,6317 0/0:124,0:124:99:0,331,4210 0/0:249,0:249:99:0,683,9251 0/0:236,0:236:99:0,611,8296 0/0:224,0:225:99:0,605,8192 0/0:93,0:93:99:0,247,3364 0/0:51,4:55:16.09:0,16,1674 0/0:54,1:55:99:0,114,1795 0/0:84,0:85:99:0,232,2937 0/0:118,0:118:99:0,325,4097 0/0:46,1:47:97.16:0,97,1583 0/0:174,0:174:99:0,454,5821 0/0:132,0:132:99:0,373,4740 0/0:101,0:101:99:0,289,3659 0/0:114,0:114:99:0,313,3948 0/0:120,0:120:99:0,319,4067 0/0:161,1:164:99:0,386,5184 0/0:111,0:111:99:0,301,3812 0/0:110,1:111:99:0,316,3983 0/0:111,0:111:99:0,319,4035 0/0:108,0:108:99:0,307,3905 0/0:114,0:114:99:0,316,3966 14 74060515 . T A 58.35 . AC=2;AF=0.024;AN=82;BaseQRankSum=-5.786;DP=5239;DS;Dels=0.00;FS=74.023;HRun=0;HaplotypeScore=1.7830;InbreedingCoeff=0.6013;MQ=59.55;MQ0=0;MQRankSum=-1.558;QD=1.17;ReadPosRankSum=-6.653 GT:AD:DP:GQ:PL 0/0:119,0:119:99:0,334,4205 0/0:112,0:112:99:0,304,3819 0/0:84,0:84:99:0,241,2995 0/0:250,0:250:99:0,680,8851 0/0:250,0:250:99:0,686,8998 0/0:228,0:228:99:0,602,8028 0/0:217,0:217:99:0,590,7745 0/0:233,0:233:99:0,611,8040 0/0:45,1:46:89.93:0,90,1483 0/0:52,2:55:87.57:0,88,1768 0/0:118,0:118:99:0,337,4186 0/0:58,0:59:99:0,159,1983 0/0:45,0:45:99:0,126,1583 0/0:130,0:130:99:0,355,4485 0/0:215,2:217:99:0,506,7110 0/0:53,2:55:90.43:0,90,1775 0/0:103,0:103:99:0,292,3658 0/0:64,1:65:99:0,144,2213 0/1:0,3:3:0.51:94,9,0 ./. 0/0:184,0:184:99:0,509,6419 0/0:129,0:129:99:0,343,4326 0/0:249,0:249:99:0,683,8904 0/0:234,0:235:99:0,614,8125 0/0:224,0:224:99:0,611,8002 0/0:93,0:93:99:0,247,3253 0/0:51,1:52:99:0,112,1811 0/0:56,1:57:99:0,117,1825 0/0:85,0:86:99:0,235,2942 0/0:118,0:118:99:0,331,4134 0/1:42,5:47:35.57:36,0,1351 0/0:174,0:174:99:0,451,5770 0/0:131,0:132:99:0,373,4667 0/0:103,0:103:99:0,292,3662 0/0:117,0:117:99:0,316,3961 0/0:117,0:117:99:0,316,3990 0/0:166,0:167:99:0,418,5339 0/0:111,0:111:99:0,304,3816 0/0:113,0:113:99:0,325,4029 0/0:111,0:111:99:0,319,4035 0/0:110,0:110:99:0,310,3876 0/0:116,0:116:99:0,337,4196 14 74060516 . T A 59.84 . AC=2;AF=0.024;AN=82;BaseQRankSum=-4.064;DP=5279;DS;Dels=0.00;FS=56.421;HRun=1;HaplotypeScore=2.2494;InbreedingCoeff=0.6012;MQ=59.54;MQ0=0;MQRankSum=-1.732;QD=1.15;ReadPosRankSum=-7.970 GT:AD:DP:GQ:PL 0/0:119,0:119:99:0,334,4063 0/0:113,0:113:99:0,304,3692 0/0:87,0:87:99:0,253,3004 0/0:250,0:250:99:0,677,8329 0/0:250,0:250:99:0,680,8463 0/0:227,0:227:99:0,599,7692 0/0:218,1:219:99:0,590,7408 0/0:233,0:233:99:0,611,7641 0/0:45,3:48:28.13:0,28,1352 0/0:55,3:58:57.41:0,57,1699 0/0:118,0:118:99:0,337,4043 0/0:59,1:60:99:0,139,1976 0/0:44,0:44:99:0,123,1484 0/0:130,0:130:99:0,355,4316 0/0:215,3:218:99:0,480,6848 0/0:53,3:56:50.39:0,50,1666 0/0:104,0:104:99:0,295,3533 0/0:65,1:66:99:0,152,2184 0/1:0,3:3:0.51:101,9,0 ./. 0/0:187,0:187:99:0,518,6356 0/0:128,0:128:99:0,346,4196 0/0:250,0:250:99:0,686,8456 0/0:236,1:237:99:0,617,7800 0/0:227,0:227:99:0,620,7674 0/0:96,1:97:99:0,217,3070 0/0:52,1:53:99:0,116,1779 0/0:58,2:60:87.93:0,88,1753 0/0:89,0:89:99:0,247,2966 0/0:121,0:121:99:0,337,4053 0/1:44,5:49:29.49:29,0,1342 0/0:173,0:173:99:0,448,5582 0/0:130,0:130:99:0,373,4470 0/0:104,0:104:99:0,298,3625 0/0:117,0:117:99:0,316,3856 0/0:117,0:117:99:0,316,3885 0/0:169,0:169:99:0,427,5302 0/0:111,0:111:99:0,301,3678 0/0:115,0:115:99:0,331,3959 0/0:113,0:113:99:0,319,3874 0/0:109,0:109:99:0,304,3679 0/0:115,0:115:99:0,334,4016 14 74060517 . A G 29.68 . AC=1;AF=0.012;AN=82;BaseQRankSum=-1.708;DP=5296;DS;Dels=0.00;FS=1.022;HRun=0;HaplotypeScore=2.3148;InbreedingCoeff=0.6133;MQ=59.55;MQ0=0;MQRankSum=0.159;QD=9.89;ReadPosRankSum=-5.446 GT:AD:DP:GQ:PL 0/0:120,0:120:99:0,334,3962 0/0:113,0:113:99:0,298,3567 0/0:86,0:86:99:0,250,2903 0/0:250,0:250:99:0,671,8086 0/0:250,0:250:99:0,668,8119 0/0:227,0:227:99:0,602,7540 0/0:224,0:224:99:0,590,7270 0/0:234,0:235:99:0,608,7429 0/0:43,4:47:0.24:12,0,1231 0/0:59,0:59:99:0,162,1930 0/0:117,0:117:99:0,328,3897 0/0:58,1:59:99:0,127,1866 0/0:44,0:44:99:0,123,1440 0/0:128,0:128:99:0,346,4094 0/0:219,0:220:99:0,584,6961 0/0:58,0:58:99:0,159,1923 0/0:103,0:103:99:0,289,3422 0/0:68,0:68:99:0,193,2292 0/1:0,3:3:0.51:83,9,0 ./. 0/0:184,0:184:99:0,506,6078 0/0:130,0:130:99:0,343,4043 0/0:249,0:250:99:0,686,8210 0/0:236,1:237:99:0,589,7574 0/0:226,0:226:99:0,611,7411 0/0:96,2:98:99:0,197,3007 0/0:52,1:53:99:0,119,1716 0/0:57,3:60:54.93:0,55,1694 0/0:88,0:88:99:0,241,2823 0/0:125,0:125:99:0,346,4056 0/0:50,0:50:99:0,141,1655 0/0:173,0:173:99:0,442,5378 0/0:131,0:131:99:0,373,4395 0/0:105,0:105:99:0,298,3556 0/0:115,0:115:99:0,307,3696 0/0:120,0:120:99:0,325,3879 0/0:169,0:170:99:0,433,5273 0/0:113,0:113:99:0,310,3662 0/0:116,0:116:99:0,331,3881 0/0:114,0:114:99:0,325,3852 0/0:108,0:108:99:0,301,3594 0/0:113,0:113:99:0,331,3870 14 74060517 . A AG 4548.87 . AC=15;AF=0.179;AN=84;BaseQRankSum=24.635;DP=5585;DS;FS=1.013;HRun=0;HaplotypeScore=385.1412;InbreedingCoeff=0.1072;MQ=58.65;MQ0=0;MQRankSum=-20.990;QD=4.24;ReadPosRankSum=-12.191 GT:AD:DP:GQ:PL 0/0:122,0:122:99:0,358,4941 0/0:116,0:116:99:0,334,4646 0/0:89,0:89:99:0,253,3514 0/0:250,0:250:99:0,724,10039 0/0:250,0:250:99:0,731,10058 0/0:233,0:228:99:0,680,9389 0/0:222,0:218:99:0,613,8915 0/0:234,0:232:99:0,701,9614 0/1:62,0:62:99:252,0,1620 0/1:62,4:66:99:114,0,2100 0/0:119,0:119:99:0,352,4887 0/1:73,0:73:99:251,0,2178 0/1:53,0:52:87.07:87,0,1678 0/0:131,0:131:99:0,385,5332 0/1:245,5:250:99:307,0,7832 0/1:59,6:65:58.06:58,0,2046 0/0:104,0:104:99:0,310,4323 0/1:82,3:85:99:190,0,2515 1/1:58,0:58:99:1413,158,0 1/1:42,0:42:99:995,107,0 0/0:189,0:189:99:0,544,7536 0/0:131,0:130:99:0,382,5222 0/0:250,0:249:99:0,737,10150 0/0:240,0:238:99:0,710,9769 0/0:229,0:228:99:0,674,9286 0/1:116,0:112:99:233,0,3611 0/1:67,0:67:99:117,0,1960 0/1:73,0:73:99:107,0,2133 0/0:90,0:90:99:0,259,3559 0/0:127,0:127:99:0,370,5071 0/1:57,6:63:99:424,0,1621 0/0:172,0:172:99:0,506,6959 0/0:131,0:131:99:0,388,5373 0/0:104,0:104:99:0,313,4317 0/0:118,0:117:99:0,320,4716 0/0:123,0:123:99:0,361,4986 0/0:170,0:170:99:0,497,6826 0/0:114,0:114:99:0,340,4673 0/0:115,0:115:99:0,346,4795 0/0:113,0:112:99:0,340,4701 0/0:113,0:113:99:0,325,4504 0/0:113,0:113:99:0,337,4640 14 74188164 . T C 1340.36 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.329;DP=2811;Dels=0.00;FS=15.074;HRun=1;HaplotypeScore=1.4411;InbreedingCoeff=-0.0244;MQ=59.18;MQ0=0;MQRankSum=0.850;QD=12.77;ReadPosRankSum=-0.230 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,117,1457 0/1:33,20:53:99:594,0,945 0/1:24,28:52:99:809,0,681 0/0:114,0:114:99:0,283,3708 0/0:122,0:122:99:0,322,4230 0/0:78,0:78:99:0,214,2825 0/0:73,0:73:99:0,199,2617 0/0:84,0:84:99:0,226,2969 0/0:60,0:60:99:0,172,2145 0/0:46,0:46:99:0,129,1602 0/0:45,0:45:99:0,123,1534 0/0:38,0:38:99:0,111,1383 0/0:42,0:42:99:0,111,1402 0/0:44,0:44:99:0,123,1534 0/0:142,0:142:99:0,391,4890 0/0:49,0:49:99:0,141,1708 0/0:61,0:61:99:0,172,2135 0/0:69,0:69:99:0,190,2361 0/0:99,1:100:99:0,277,3447 0/0:102,0:103:99:0,271,3365 0/0:106,0:108:99:0,286,3622 0/0:56,0:56:99:0,141,1793 0/0:143,0:143:99:0,388,5063 0/0:77,0:77:99:0,205,2667 0/0:84,0:84:99:0,232,2984 0/0:81,0:81:99:0,208,2728 0/0:37,0:37:99:0,108,1353 0/0:40,0:40:99:0,114,1420 0/0:32,0:32:93.29:0,93,1167 0/0:59,0:59:99:0,163,2027 0/0:43,0:43:99:0,129,1611 0/0:78,0:79:99:0,211,2620 0/0:78,0:78:99:0,193,2458 0/0:45,0:45:99:0,132,1640 0/0:38,0:38:99:0,102,1315 0/0:52,0:52:99:0,147,1830 0/0:81,0:82:99:0,220,2738 0/0:58,0:58:99:0,163,2030 0/0:49,0:49:99:0,144,1804 0/0:60,1:61:99:0,169,2113 0/0:53,0:53:99:0,150,1880 0/0:40,0:40:99:0,105,1327 14 74425764 . ACTCTGC A 1510.31 . AC=33;AF=0.393;AN=84;BaseQRankSum=-9.447;DP=2433;FS=1495.599;HRun=0;HaplotypeScore=307.8217;InbreedingCoeff=-0.6304;MQ=58.22;MQ0=0;MQRankSum=0.619;QD=0.77;ReadPosRankSum=-19.302 GT:AD:DP:GQ:PL 0/0:47,0:47:12.99:0,13,3340 0/1:47,0:47:37.06:37,0,3679 0/1:46,0:46:36.19:36,0,3500 0/1:89,0:89:32.39:32,0,6332 0/1:70,0:70:99:133,0,5014 0/0:62,0:62:70.56:0,71,3637 0/1:61,0:59:87:87,0,4067 0/1:56,0:55:73.53:74,0,3690 0/1:58,0:58:5.16:5,0,4455 0/1:34,0:34:25.45:25,0,2672 0/1:50,0:50:76.10:76,0,3297 0/1:51,0:50:11.22:11,0,3639 0/1:49,0:49:6.18:6,0,3686 0/0:40,0:40:67.38:0,67,3382 0/1:124,13:137:99:108,0,10066 0/1:50,0:50:63:63,0,3381 0/1:47,0:47:30.93:31,0,3041 0/1:54,0:54:76.45:76,0,3856 0/1:69,0:69:27.85:28,0,4704 0/1:84,0:84:55.76:56,0,5023 0/0:66,0:66:99:0,141,5190 0/1:47,0:47:50.89:51,0,2926 0/1:95,0:95:99:135,0,6999 0/1:55,0:55:16.97:17,0,3649 0/1:56,0:56:19.92:20,0,3566 0/0:60,0:60:47.74:0,48,3925 0/1:38,0:38:42.29:42,0,2576 0/1:59,0:59:27.21:27,0,4408 0/1:43,0:42:34.18:34,0,2660 0/0:46,3:49:58:0,58,4104 0/0:46,0:46:99:0,105,3843 0/1:85,0:85:19.91:20,0,5409 0/0:48,0:48:56.30:0,56,3759 0/1:54,0:54:50.46:50,0,3563 0/1:51,0:51:99:131,0,3084 0/1:66,0:66:48.41:48,0,4807 0/1:72,0:72:99:105,0,4575 0/1:50,0:50:17.22:17,0,3461 0/1:45,0:45:15.27:15,0,3380 0/1:47,0:47:39.03:39,0,3810 0/0:46,0:46:15.80:0,16,3752 0/1:54,0:54:59.71:60,0,3999 14 74425765 . C A 1889.65 . AC=31;AF=0.369;AN=84;BaseQRankSum=-15.981;DP=2433;Dels=0.01;FS=1524.782;HRun=1;HaplotypeScore=3.1130;InbreedingCoeff=-0.5813;MQ=58.22;MQ0=0;MQRankSum=-1.398;QD=1.07;ReadPosRankSum=-18.290 GT:AD:DP:GQ:PL 0/1:32,15:47:2.14:2,0,1079 0/1:36,11:47:29.02:29,0,1124 0/1:33,13:46:58.50:59,0,1109 0/1:60,29:89:60.74:61,0,2111 0/1:47,23:70:99:131,0,1707 0/0:39,23:62:45.07:0,45,1276 0/1:41,20:61:77.60:78,0,1348 0/1:36,20:56:97.40:97,0,1253 0/0:44,14:58:61.27:0,61,1452 0/1:26,8:34:60.54:61,0,785 0/1:34,16:50:87.50:87,0,1134 0/1:36,15:51:26.54:27,0,1159 0/1:37,12:49:23.25:23,0,1213 0/0:33,7:40:62.87:0,63,1136 0/0:101,23:124:68.40:0,68,3408 0/1:35,15:50:89.16:89,0,1044 0/1:30,17:47:43.14:43,0,941 0/1:39,15:54:99:107,0,1196 0/1:43,26:69:44.55:45,0,1398 0/1:54,30:84:23.43:23,0,1558 0/0:52,14:66:99:0,138,1736 0/1:30,17:47:99:107,0,893 0/1:67,28:95:99:178,0,2316 0/1:35,20:55:27.13:27,0,1259 0/0:36,20:56:0.42:0,0,1206 0/0:41,19:60:39.79:0,40,1330 0/1:23,15:38:30.67:31,0,769 0/1:42,17:59:83.30:83,0,1303 0/1:28,15:43:53.78:54,0,871 0/0:39,7:46:80.92:0,81,1355 0/0:35,11:46:70.54:0,71,1283 0/1:56,29:85:69.03:69,0,1674 0/0:36,12:48:19.09:0,19,1180 0/1:39,15:54:48.04:48,0,1148 0/1:32,19:51:99:105,0,911 0/1:50,16:66:84.24:84,0,1540 0/1:45,27:72:99:171,0,1322 0/1:34,16:50:34.32:34,0,1100 0/1:34,11:45:5.63:6,0,1047 0/1:36,11:47:56.66:57,0,1185 0/0:36,10:46:39.66:0,40,1222 0/1:39,15:54:48.88:49,0,1193 14 74428445 . G A 85191.92 . AC=36;AF=0.429;AN=84;BaseQRankSum=33.530;DP=6228;DS;Dels=0.00;FS=5.446;HRun=0;HaplotypeScore=2.7192;InbreedingCoeff=-0.0694;MQ=59.43;MQ0=0;MQRankSum=3.781;QD=20.35;ReadPosRankSum=0.282 GT:AD:DP:GQ:PL 0/1:61,40:101:99:1115,0,1578 0/1:38,47:85:99:1335,0,1023 0/0:108,0:108:99:0,304,3350 0/1:121,129:250:99:3841,0,3392 0/0:249,0:249:99:0,698,8577 0/0:230,1:231:99:0,644,7902 0/0:194,1:195:99:0,488,6403 0/1:100,103:204:99:2988,0,2820 0/1:59,64:123:99:1760,0,1443 0/0:110,0:110:99:0,304,3374 0/1:50,61:111:99:1816,0,1261 0/1:63,44:107:99:1186,0,1653 0/1:44,48:92:99:1372,0,1115 0/0:90,0:90:99:0,256,2827 0/0:250,0:250:99:0,692,7736 0/0:97,1:98:99:0,238,2963 0/1:41,42:83:99:1297,0,1045 1/1:0,116:116:99:4160,343,0 1/1:1,227:228:99:7913,617,0 1/1:0,226:227:99:7845,641,0 1/1:0,242:243:99:8082,647,0 0/1:69,88:157:99:2492,0,1789 1/1:0,249:249:99:8779,707,0 0/1:89,92:181:99:2708,0,2439 0/1:99,80:179:99:2361,0,2816 0/1:106,89:195:99:2526,0,2978 0/0:103,0:103:99:0,301,3308 0/1:62,54:116:99:1568,0,1520 0/1:43,42:85:99:1226,0,1102 0/1:48,57:105:99:1623,0,1222 1/1:0,95:95:99:3436,283,0 0/1:106,75:181:99:2060,0,2793 0/0:139,1:140:99:0,332,4175 0/1:58,52:110:99:1553,0,1454 0/1:49,58:107:99:1714,0,1251 0/1:66,63:129:99:1828,0,1706 0/0:219,0:219:99:0,601,6675 0/0:114,2:116:99:0,260,3487 0/0:132,1:133:99:0,330,4060 0/1:61,65:126:99:1936,0,1556 1/1:0,94:94:99:3212,262,0 0/1:56,51:107:99:1459,0,1507 14 74523869 . A G 12502.55 . 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G A 10240.37 . AC=12;AF=0.143;AN=84;BaseQRankSum=-3.336;DP=2553;Dels=0.00;FS=1.823;HRun=1;HaplotypeScore=0.8824;InbreedingCoeff=0.0278;MQ=59.52;MQ0=0;MQRankSum=1.675;QD=13.69;ReadPosRankSum=-0.656 GT:AD:DP:GQ:PL 0/1:30,20:50:99:568,0,990 0/0:47,0:47:99:0,132,1679 0/0:45,0:45:99:0,129,1640 0/0:77,1:78:99:0,185,2902 0/0:82,0:82:99:0,223,3010 0/1:42,31:73:99:944,0,1357 0/0:71,0:71:99:0,196,2662 0/1:36,23:59:99:695,0,1233 0/0:64,0:64:99:0,172,2239 0/0:52,0:52:99:0,150,1893 0/0:63,0:63:99:0,184,2328 0/0:64,0:64:99:0,181,2302 0/0:47,0:47:99:0,132,1673 0/0:48,0:48:99:0,138,1755 0/1:89,57:146:99:1570,0,2666 0/1:32,17:49:99:489,0,1016 0/1:33,15:48:99:432,0,965 0/0:41,0:41:99:0,114,1472 0/0:86,0:87:99:0,241,3050 0/0:87,0:87:99:0,235,2958 0/1:35,32:67:99:1000,0,1042 0/0:62,0:62:99:0,178,2267 0/0:81,0:82:99:0,223,3041 0/1:34,20:54:99:554,0,1070 1/1:0,63:63:99:2232,169,0 0/0:49,0:49:99:0,135,1843 0/0:54,0:54:99:0,144,1884 0/0:49,0:49:99:0,141,1790 0/0:46,0:46:99:0,129,1670 0/0:45,0:45:99:0,132,1665 0/0:56,0:57:99:0,160,2025 0/1:45,41:86:99:1168,0,1361 0/0:62,2:64:99:0,139,2236 0/0:56,0:56:99:0,166,2101 0/0:51,0:51:99:0,144,1854 0/0:49,0:49:99:0,141,1800 0/0:51,0:51:99:0,138,1752 0/0:42,0:42:99:0,120,1548 0/0:48,0:48:99:0,132,1688 0/0:61,0:61:99:0,175,2200 0/1:29,21:50:99:587,0,917 0/0:63,0:63:99:0,175,2243 14 74711883 . C T 27263.85 . AC=36;AF=0.429;AN=84;BaseQRankSum=-9.275;DP=1934;Dels=0.00;FS=7.624;HRun=1;HaplotypeScore=0.7557;InbreedingCoeff=-0.0694;MQ=58.79;MQ0=0;MQRankSum=2.344;QD=20.50;ReadPosRankSum=0.715 GT:AD:DP:GQ:PL 0/0:47,0:48:99:0,126,1627 0/0:32,0:32:93.28:0,93,1147 0/0:34,0:34:99:0,99,1262 1/1:0,82:82:99:2866,226,0 1/1:0,62:62:99:2229,172,0 0/1:20,19:39:99:602,0,672 0/0:59,0:59:99:0,144,1964 1/1:0,47:47:99:1692,129,0 0/1:7,18:25:99:569,0,171 0/0:38,0:38:99:0,108,1364 0/1:18,14:32:99:426,0,562 0/0:47,0:47:99:0,132,1674 0/0:38,0:38:99:0,114,1431 0/1:18,24:42:99:761,0,563 0/1:63,58:121:99:1614,0,1864 1/1:0,37:37:99:1303,105,0 0/1:21,17:38:99:520,0,642 0/1:19,18:37:99:566,0,555 0/1:34,30:65:99:835,0,965 0/1:39,43:82:99:1172,0,1038 0/0:64,0:64:99:0,181,2292 0/1:25,15:40:99:439,0,824 0/1:43,35:78:99:1033,0,1378 0/1:21,19:40:99:551,0,676 0/1:24,22:46:99:691,0,758 0/0:35,0:35:93.30:0,93,1248 0/1:11,18:29:99:537,0,334 1/1:0,34:34:99:1225,99,0 0/1:18,19:37:99:576,0,528 1/1:0,29:29:78.24:975,78,0 0/1:11,19:30:99:621,0,301 0/0:75,0:75:99:0,208,2602 1/1:0,34:34:99:1252,99,0 0/1:8,29:38:99:933,0,200 0/0:36,0:36:99:0,102,1316 0/1:18,25:43:99:828,0,511 0/0:58,0:60:99:0,166,2071 0/0:38,0:38:99:0,108,1372 0/1:23,17:40:99:520,0,700 0/1:16,19:35:99:576,0,509 0/1:9,20:29:99:661,0,254 0/1:17,22:39:99:692,0,533 14 74754936 . G A 119.38 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.394;DP=1125;Dels=0.00;FS=5.893;HRun=0;HaplotypeScore=0.6388;InbreedingCoeff=-0.0122;MQ=58.94;MQ0=0;MQRankSum=0.169;QD=4.97;ReadPosRankSum=0.357 GT:AD:DP:GQ:PL 0/0:27,0:27:75.23:0,75,937 0/0:27,1:28:36.94:0,37,830 0/0:27,0:27:72.23:0,72,925 0/0:37,0:37:93.29:0,93,1228 0/0:25,0:25:66.20:0,66,867 0/0:9,0:10:27.09:0,27,354 0/1:17,7:24:99:166,0,438 0/0:20,0:20:57.18:0,57,754 0/0:26,0:26:72.21:0,72,895 0/0:21,0:21:60.19:0,60,772 0/0:21,0:22:57.17:0,57,718 0/0:25,0:26:63.18:0,63,788 0/0:20,0:20:51.16:0,51,653 0/0:26,0:26:75.21:0,75,928 0/0:94,0:95:99:0,253,3108 0/0:23,0:23:63.19:0,63,772 0/0:23,0:23:66.20:0,66,821 0/0:18,0:18:48.14:0,48,603 0/0:44,0:45:99:0,117,1422 0/0:39,0:39:99:0,102,1276 0/0:37,0:37:99:0,102,1232 0/0:19,0:19:57.18:0,57,712 0/0:33,0:33:87.28:0,87,1156 0/0:9,0:9:24.07:0,24,312 0/0:25,0:25:69.21:0,69,915 0/0:14,0:14:39.10:0,39,497 0/0:24,0:24:66.20:0,66,810 0/0:24,0:24:66.20:0,66,809 0/0:21,0:21:54.17:0,54,680 0/0:18,0:18:54.17:0,54,668 0/0:27,0:27:75.24:0,75,966 0/0:41,0:41:99:0,105,1334 0/0:24,0:24:66.17:0,66,824 0/0:29,0:29:87.25:0,87,1055 0/0:10,0:10:27.09:0,27,357 0/0:31,0:31:93.26:0,93,1137 0/0:45,0:46:99:0,108,1316 0/0:26,0:26:72.20:0,72,891 0/0:17,0:17:39.12:0,39,498 0/0:30,0:30:72.23:0,72,929 0/0:12,0:12:33.10:0,33,411 0/0:26,0:26:72.23:0,72,919 14 74756775 . GAATAGCACCCCAT G 6142.93 . AC=41;AF=0.488;AN=84;BaseQRankSum=-15.121;DP=3142;DS;FS=3200.000;HRun=0;HaplotypeScore=718.2537;InbreedingCoeff=-0.9289;MQ=59.32;MQ0=0;MQRankSum=2.972;QD=2.00;ReadPosRankSum=-29.710 GT:AD:DP:GQ:PL 0/1:71,0:71:99:166,0,9202 0/1:66,0:66:99:163,0,7709 0/1:51,0:51:99:144,0,6338 0/1:145,0:144:99:308,0,20532 0/1:140,0:139:99:108,0,19478 0/1:83,0:81:34.98:35,0,12047 0/1:65,0:63:99:103,0,8555 0/1:98,0:95:99:222,0,13509 0/1:56,0:56:99:206,0,7131 0/1:60,0:60:99:174,0,7537 0/1:74,0:74:99:171,0,8521 0/1:51,0:51:28.50:29,0,6264 0/1:50,0:50:99:159,0,6549 0/1:60,0:60:63.31:63,0,7878 0/1:180,0:180:99:332,0,23196 0/1:59,0:59:13.44:13,0,8039 0/1:55,0:55:99:103,0,7123 0/1:50,0:50:0.92:1,0,6703 0/1:91,0:91:99:232,0,11600 0/1:125,0:125:89.44:89,0,15490 0/1:79,0:79:99:152,0,9796 0/1:76,0:76:99:288,0,9158 0/1:130,0:130:99:168,0,18494 0/1:68,0:68:12.19:12,0,9746 0/1:99,0:97:99:259,0,12310 0/0:72,0:70:27.33:0,27,10674 0/1:47,0:47:72.45:72,0,5883 0/1:67,0:66:59.86:60,0,8597 0/1:36,0:36:71.80:72,0,5154 0/1:49,0:49:78.92:79,0,6579 0/1:57,0:57:99:249,0,6926 0/1:73,38:111:55.09:55,0,12927 0/1:76,0:76:68.50:68,0,9544 0/1:52,0:52:75.88:76,0,6390 0/1:59,0:59:99:253,0,7583 0/1:63,0:63:99:362,0,7595 0/1:89,0:89:99:249,0,10549 0/1:39,22:61:99:266,0,7374 0/1:62,0:62:99:213,0,8023 0/1:63,0:63:99:137,0,8369 0/1:44,0:44:99:198,0,4703 0/1:52,0:52:33.22:33,0,7176 14 74756776 . A G 3120.10 . AC=31;AF=0.369;AN=84;BaseQRankSum=-10.558;DP=3142;DS;Dels=0.02;FS=3200.000;HRun=2;HaplotypeScore=7.4692;InbreedingCoeff=-0.5890;MQ=59.32;MQ0=0;MQRankSum=-1.015;QD=1.40;ReadPosRankSum=-29.850 GT:AD:DP:GQ:PL 0/1:49,22:71:57.37:57,0,1382 0/1:42,24:66:66.38:66,0,1250 0/1:33,18:51:99:108,0,1026 0/0:110,35:145:1.64:0,2,3233 0/0:107,33:140:20.92:0,21,3287 0/1:65,18:83:8.66:9,0,2089 0/1:47,18:65:99:107,0,1501 0/1:73,25:98:99:134,0,2247 0/1:40,16:56:99:180,0,1147 0/1:42,18:60:99:160,0,1199 0/1:47,27:74:99:102,0,1389 0/0:34,17:51:6.32:0,6,1042 0/1:36,14:50:70.69:71,0,1063 0/1:43,17:60:9.57:10,0,1204 0/1:127,53:180:99:223,0,3715 0/0:42,17:59:4.57:0,5,1346 0/1:38,17:55:99:139,0,1204 0/0:36,14:50:42.70:0,43,1121 0/1:63,28:91:83.35:83,0,1839 0/0:86,39:125:3.98:0,4,2617 0/1:52,27:79:99:118,0,1568 0/1:48,28:76:99:280,0,1372 0/1:97,33:130:69.16:69,0,3035 0/1:52,16:68:3.12:3,0,1714 0/1:68,31:99:74.86:75,0,2032 0/0:59,13:72:59.58:0,60,1926 0/1:31,16:47:79.03:79,0,953 0/1:47,20:67:58.87:59,0,1438 0/1:26,10:36:70.22:70,0,785 0/0:36,13:49:40.04:0,40,1128 0/1:37,20:57:99:216,0,1075 0/0:71,2:73:99:0,205,2486 0/1:51,25:76:2.88:0,0,1526 0/1:34,18:52:51.92:52,0,1082 0/1:40,19:59:99:110,0,1080 0/1:42,21:63:99:219,0,1246 0/1:56,33:89:99:156,0,1661 0/0:39,0:39:99:0,111,1303 0/1:42,20:62:99:118,0,1265 0/1:46,17:63:99:105,0,1364 0/1:28,16:44:99:111,0,703 0/0:37,15:52:12.66:0,13,1165 14 74757019 . C T 1290.83 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.469;DP=3706;Dels=0.00;FS=6.609;HRun=0;HaplotypeScore=2.5366;InbreedingCoeff=-0.0120;MQ=59.10;MQ0=0;MQRankSum=1.783;QD=12.29;ReadPosRankSum=-0.710 GT:AD:DP:GQ:PL 0/0:68,0:68:99:0,190,2362 0/0:56,0:56:99:0,144,1820 0/0:49,0:49:99:0,141,1767 0/0:231,0:231:99:0,611,8030 0/0:172,0:172:99:0,472,6121 0/0:148,0:148:99:0,403,5213 0/1:59,46:105:99:1337,0,1716 0/0:160,0:160:99:0,442,5716 0/0:64,0:64:99:0,178,2254 0/0:56,0:56:99:0,159,1903 0/0:49,0:49:99:0,135,1704 0/0:51,0:51:99:0,141,1783 0/0:42,0:42:99:0,120,1504 0/0:55,0:55:99:0,166,2050 0/0:202,0:203:99:0,539,6621 0/0:62,0:62:99:0,166,2086 0/0:52,0:52:99:0,141,1759 0/0:51,0:51:99:0,138,1695 0/0:133,0:134:99:0,340,4159 0/0:123,0:124:99:0,325,4096 0/0:109,0:110:99:0,301,3621 0/0:75,0:75:99:0,205,2487 0/0:208,0:208:99:0,566,7499 0/0:125,0:125:99:0,340,4316 0/0:105,0:105:99:0,292,3769 0/0:120,0:120:99:0,322,4155 0/0:40,0:40:99:0,117,1443 0/0:56,0:56:99:0,159,1965 0/0:43,0:43:99:0,117,1460 0/0:52,0:52:99:0,141,1779 0/0:51,0:51:99:0,147,1851 0/0:127,0:128:99:0,346,4350 0/0:84,0:84:99:0,229,2850 0/0:48,0:48:99:0,135,1690 0/0:53,0:53:99:0,150,1865 0/0:65,0:65:99:0,178,2222 0/0:128,0:129:99:0,343,4146 0/0:64,0:65:99:0,174,2129 0/0:60,0:60:99:0,166,2086 0/0:63,0:63:99:0,178,2222 0/0:45,0:46:99:0,129,1597 0/0:47,0:47:99:0,135,1663 14 74764675 . G A 320.88 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.993;DP=1542;Dels=0.00;FS=1.098;HRun=0;HaplotypeScore=0.5898;InbreedingCoeff=-0.0120;MQ=59.11;MQ0=0;MQRankSum=2.964;QD=12.84;ReadPosRankSum=-0.354 GT:AD:DP:GQ:PL 0/0:33,0:33:93.26:0,93,1104 0/0:36,0:36:99:0,102,1218 0/0:34,1:35:60.14:0,60,1071 0/0:50,0:50:99:0,141,1833 0/0:39,0:39:99:0,111,1405 0/0:31,0:31:90.29:0,90,1176 0/1:11,14:25:99:367,0,251 0/0:36,0:36:99:0,102,1299 0/0:38,0:38:99:0,105,1252 0/0:31,0:31:84.23:0,84,1006 0/0:25,0:25:72.21:0,72,865 0/0:38,0:38:99:0,111,1303 0/0:25,0:25:72.20:0,72,885 0/0:32,0:32:96.29:0,96,1164 0/0:96,0:96:99:0,268,3186 0/0:30,0:30:87.22:0,87,1017 0/0:32,0:32:93.25:0,93,1061 0/0:25,0:25:75.18:0,75,853 0/0:51,0:51:99:0,138,1654 0/0:55,0:55:99:0,147,1802 0/0:47,0:47:99:0,126,1496 0/0:19,0:19:51.15:0,51,624 0/0:73,0:73:99:0,193,2531 0/0:17,0:17:45.14:0,45,582 0/0:37,0:37:99:0,99,1265 0/0:22,0:22:63.20:0,63,813 0/0:29,0:29:84.25:0,84,1033 0/0:31,0:31:87.23:0,87,1033 0/0:24,0:24:66.20:0,66,808 0/0:36,0:36:93.28:0,93,1136 0/0:34,0:34:99:0,99,1158 0/0:45,0:45:99:0,108,1334 0/0:44,0:44:99:0,129,1511 0/0:37,0:37:99:0,108,1253 0/0:36,0:36:99:0,102,1180 0/0:42,0:42:99:0,120,1434 0/0:44,0:44:99:0,114,1356 0/0:40,0:40:99:0,111,1282 0/0:35,0:35:99:0,105,1219 0/0:34,0:34:93.26:0,93,1114 0/0:24,0:24:69.19:0,69,800 0/0:29,0:29:81.23:0,81,950 14 74874238 . C A 52.35 . AC=3;AF=0.036;AN=84;BaseQRankSum=-5.265;DP=1591;Dels=0.00;FS=14.514;HRun=1;HaplotypeScore=1.6065;InbreedingCoeff=-0.0788;MQ=58.48;MQ0=1;MQRankSum=-1.009;QD=0.95;ReadPosRankSum=-2.335 GT:AD:DP:GQ:PL 0/0:21,4:25:36.08:0,36,395 0/0:19,3:23:39.08:0,39,424 0/0:17,4:21:14.36:0,14,328 0/0:83,12:100:99:0,129,1454 0/0:81,11:95:99:0,147,1646 0/0:51,4:55:52.47:0,52,771 0/0:36,4:40:28.59:0,29,628 0/0:49,7:60:87.14:0,87,931 0/1:12,4:18:39.81:40,0,196 0/0:12,2:15:12.03:0,12,128 0/0:13,2:16:21.04:0,21,223 0/0:22,5:27:2.47:0,2,289 0/1:17,1:18:9.38:9,0,192 0/0:27,1:29:5.67:0,6,374 0/0:62,13:79:60.93:0,61,960 0/1:12,6:19:70.13:70,0,129 0/0:20,5:26:33.05:0,33,334 0/0:16,3:19:0.90:6,0,236 0/0:34,6:43:35.57:0,36,684 0/0:67,5:72:69.96:0,70,1251 0/0:48,7:58:78.21:0,78,910 0/0:36,2:39:63.13:0,63,685 0/0:89,15:106:14.16:0,14,1443 0/0:41,4:45:69.16:0,69,777 0/0:47,5:53:96.20:0,96,1057 0/0:36,2:39:31.51:0,32,648 0/0:18,2:20:30.04:0,30,306 0/0:13,3:17:24.07:0,24,278 0/0:19,2:21:24.05:0,24,264 0/0:23,7:32:39.10:0,39,429 0/0:23,3:27:24.07:0,24,280 0/0:52,3:59:80.52:0,81,1061 0/0:29,8:37:23.38:0,23,459 0/0:11,3:15:27.07:0,27,302 0/0:13,2:16:0.58:8,0,196 0/0:27,1:28:10.36:0,10,319 0/0:38,13:56:23.53:0,24,546 0/0:22,6:28:0.85:0,1,346 0/0:18,1:20:30.06:0,30,320 0/0:23,0:24:24.02:0,24,241 0/0:22,3:25:36.08:0,36,392 0/0:21,4:26:4.37:0,4,239 14 74976852 . G A 562.45 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.412;DP=1904;Dels=0.00;FS=11.634;HRun=2;HaplotypeScore=0.9212;InbreedingCoeff=-0.0120;MQ=59.08;MQ0=0;MQRankSum=0.862;QD=16.07;ReadPosRankSum=-1.221 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,117,1483 0/0:43,0:43:99:0,123,1555 0/0:38,0:38:99:0,102,1304 0/0:88,0:88:99:0,247,3288 0/0:87,0:87:99:0,229,3106 0/0:64,0:64:99:0,181,2362 0/0:38,0:38:99:0,108,1468 0/0:31,0:32:87.28:0,87,1164 0/0:29,0:29:84.27:0,84,1068 0/0:40,0:40:99:0,105,1358 0/0:28,0:28:78.25:0,78,998 0/0:37,0:37:93.29:0,93,1183 0/0:27,0:27:78.24:0,78,982 0/0:45,0:45:99:0,126,1609 0/0:112,0:112:99:0,283,3658 0/0:24,0:24:72.22:0,72,897 0/0:42,0:42:99:0,108,1393 0/0:38,0:38:96.31:0,96,1252 0/0:60,0:61:99:0,169,2140 0/0:69,0:69:99:0,178,2271 0/0:81,0:81:99:0,208,2684 0/0:40,0:40:99:0,111,1403 0/0:81,0:81:99:0,232,3167 0/0:42,0:42:99:0,114,1552 0/0:54,0:54:99:0,153,2067 0/0:39,0:39:99:0,108,1384 0/0:32,0:32:93.30:0,93,1201 0/1:15,20:35:99:609,0,395 0/0:37,0:37:99:0,108,1382 0/0:39,0:39:99:0,105,1352 0/0:37,0:37:99:0,108,1373 0/0:61,0:61:99:0,156,1999 0/0:35,0:35:99:0,99,1262 0/0:24,0:24:69.19:0,69,849 0/0:35,0:35:99:0,99,1218 0/0:36,0:36:93.28:0,93,1192 0/0:53,0:53:99:0,147,1867 0/0:34,0:34:87.27:0,87,1091 0/0:27,0:27:75.24:0,75,953 0/0:37,0:37:96.30:0,96,1227 0/0:23,0:23:63.20:0,63,800 0/0:41,0:41:99:0,120,1534 14 74988687 . G A 1010.57 . AC=5;AF=0.060;AN=84;BaseQRankSum=-5.987;DP=1290;Dels=0.00;FS=0.889;HRun=0;HaplotypeScore=0.8581;InbreedingCoeff=-0.0633;MQ=59.12;MQ0=0;MQRankSum=1.406;QD=11.23;ReadPosRankSum=0.171 GT:AD:DP:GQ:PL 0/0:17,0:17:48.15:0,48,590 0/0:12,0:12:36.11:0,36,443 0/0:21,0:21:60.17:0,60,730 0/0:76,0:76:99:0,220,2846 0/0:61,0:61:99:0,181,2375 0/0:46,0:47:99:0,138,1795 0/0:48,0:48:99:0,132,1741 0/0:39,0:40:99:0,114,1503 0/0:13,0:13:39.12:0,39,481 0/0:20,0:20:60.18:0,60,732 0/0:13,0:13:36.11:0,36,437 0/1:10,6:16:99:148,0,320 0/1:7,12:19:99:357,0,199 0/0:18,0:18:51.15:0,51,629 0/0:84,0:84:99:0,241,2914 0/0:29,0:29:84.21:0,84,987 0/0:28,0:28:78.21:0,78,946 0/0:23,0:23:66.18:0,66,791 0/0:54,0:54:99:0,147,1775 0/0:40,0:40:99:0,117,1386 0/0:38,0:38:99:0,108,1310 0/0:28,0:28:84.23:0,84,997 0/0:93,0:93:99:0,277,3632 0/0:29,0:29:84.26:0,84,1068 0/0:40,0:40:99:0,117,1500 0/0:27,0:27:75.23:0,75,961 0/0:15,0:15:45.13:0,45,533 0/0:14,0:14:42.13:0,42,504 0/0:15,0:15:42.13:0,42,522 0/1:9,11:20:99:314,0,244 0/1:11,6:17:99:128,0,343 0/0:36,1:37:73.07:0,73,1236 0/0:31,0:31:87.27:0,87,1080 0/0:15,0:15:39.11:0,39,481 0/0:24,0:24:72.21:0,72,862 0/0:20,0:20:60.16:0,60,703 0/0:45,0:46:99:0,126,1539 0/0:18,0:18:48.14:0,48,579 0/0:21,0:21:63.19:0,63,764 0/0:23,0:23:69.21:0,69,848 0/0:22,0:22:63.19:0,63,780 0/1:12,6:18:99:160,0,371 14 75134206 . G C 442.93 . AC=11;AF=0.131;AN=84;BaseQRankSum=-16.134;DP=2711;Dels=0.00;FS=690.040;HRun=2;HaplotypeScore=1.2259;InbreedingCoeff=-0.1879;MQ=58.04;MQ0=0;MQRankSum=1.368;QD=0.83;ReadPosRankSum=-15.772 GT:AD:DP:GQ:PL 0/1:29,17:46:13.64:14,0,721 0/1:28,16:44:22.12:22,0,688 0/0:34,12:46:1.92:3,0,863 0/0:77,65:142:28.95:0,29,2373 0/0:72,36:109:99:0,103,2321 0/0:71,43:115:74.88:0,75,1902 0/0:48,37:86:91.51:0,92,1570 0/0:71,32:103:99:0,153,1993 0/0:28,11:39:14.04:0,14,788 0/0:33,12:45:22.31:0,22,888 0/0:22,8:30:51.16:0,51,642 0/0:35,12:47:33.18:0,33,1056 0/0:41,4:45:61.70:0,62,1061 0/1:14,16:30:27.97:28,0,303 0/0:106,61:167:99:0,112,3070 0/0:20,18:38:6.09:0,6,591 0/0:29,23:52:1.70:0,2,725 0/0:36,14:50:52.06:0,52,979 0/1:47,24:71:99:125,0,1216 0/0:59,17:76:61.02:0,61,1582 0/1:45,20:65:12.35:12,0,1230 0/0:36,12:48:54.76:0,55,1013 0/0:75,60:135:4.36:0,4,2412 0/0:57,40:97:83.89:0,84,1696 0/0:73,34:107:99:0,158,2376 0/0:67,36:103:99:0,124,2063 0/1:19,12:31:43.23:43,0,469 0/1:35,13:49:4.35:4,0,893 0/0:24,11:35:15.90:0,16,771 0/1:30,13:43:7.91:8,0,914 0/0:27,9:36:72.22:0,72,906 0/0:64,34:98:79.30:0,79,1629 0/0:27,14:41:0.24:0,0,612 0/0:32,16:49:1.42:4,0,945 0/0:31,15:46:27.52:0,28,815 0/0:37,16:53:52.98:0,53,1183 0/1:36,29:66:99:210,0,805 0/0:45,3:48:99:0,108,1349 0/1:31,21:52:47.37:47,0,822 0/1:17,18:35:54.53:55,0,438 0/0:29,18:47:37.85:0,38,801 0/0:30,16:46:21.01:0,21,843 14 75134206 . G GC 1115.59 . AC=22;AF=0.262;AN=84;BaseQRankSum=13.228;DP=2952;FS=1186.098;HRun=2;HaplotypeScore=315.7718;InbreedingCoeff=-0.3563;MQ=57.02;MQ0=0;MQRankSum=-3.320;QD=0.76;ReadPosRankSum=-23.093 GT:AD:DP:GQ:PL 0/1:46,0:46:49.31:49,0,607 0/1:49,0:49:20.86:21,0,645 0/0:50,0:50:10.98:0,11,803 0/1:150,0:150:54.35:54,0,2003 0/0:123,0:123:78.34:0,78,2166 0/0:123,0:118:69.08:0,69,1805 0/0:94,0:89:21.96:0,22,1236 0/0:113,0:108:99:0,109,1702 0/1:48,0:48:25.15:25,0,711 0/0:45,0:45:5.50:0,6,764 0/0:32,1:33:42.24:0,42,525 0/0:54,0:54:48.50:0,48,1036 0/0:39,11:50:26.47:0,26,931 0/1:33,0:33:33.77:34,0,260 0/1:184,0:184:96.85:97,0,2669 0/1:43,0:43:48.28:48,0,491 0/1:58,0:58:20.44:20,0,709 0/0:52,0:52:12.06:0,12,854 0/1:84,0:84:99:233,0,1073 0/0:83,0:83:70.38:0,70,1653 0/1:78,0:78:99:158,0,1049 0/0:47,1:48:67.70:0,68,929 0/1:140,0:140:27.37:27,0,1988 0/0:101,1:101:53.71:0,54,1362 0/0:117,0:113:99:0,132,2018 0/0:108,0:101:65.11:0,65,1660 0/1:33,0:33:5.52:6,0,477 0/0:52,0:52:2.98:0,0,744 0/1:36,0:36:18.25:18,0,567 0/1:49,0:49:42.27:42,0,707 0/0:42,0:42:69.06:0,69,820 0/0:105,0:105:29.07:0,29,1389 0/1:42,0:42:10.28:10,0,626 0/1:51,0:51:1.26:1,0,886 0/0:47,0:47:15.35:0,15,752 0/1:58,0:58:12.60:13,0,1019 0/1:73,1:74:99:306,0,789 0/1:41,18:59:19.89:20,0,940 0/1:54,0:54:42.95:43,0,759 0/1:40,0:40:46.96:47,0,375 0/1:50,0:50:18.47:18,0,788 0/0:52,0:52:16.65:0,17,686 14 75139816 . C G 6.63 . AC=2;AF=0.024;AN=84;BaseQRankSum=-11.728;DP=3049;Dels=0.00;FS=126.406;HRun=1;HaplotypeScore=0.8793;InbreedingCoeff=-0.0244;MQ=58.84;MQ0=0;MQRankSum=-1.326;QD=0.05;ReadPosRankSum=-6.164 GT:AD:DP:GQ:PL 0/0:45,10:55:96.26:0,96,1148 0/0:44,15:59:99:0,102,1191 0/0:47,11:59:99:0,111,1376 0/0:92,24:116:99:0,202,2534 0/0:76,30:107:99:0,112,1946 0/0:100,13:113:99:0,180,2244 0/0:76,17:93:99:0,122,2026 0/0:85,14:99:99:0,156,1968 0/0:56,17:73:99:0,129,1525 0/0:39,12:51:93.29:0,93,1158 0/0:43,17:60:63.59:0,64,1096 0/0:50,8:58:99:0,126,1548 0/0:38,11:49:90.25:0,90,1093 0/0:46,18:64:99:0,102,1235 0/0:137,44:181:99:0,319,3924 0/0:39,11:50:93.24:0,93,1107 0/0:30,13:43:63.16:0,63,747 0/0:33,10:43:75.22:0,75,934 0/0:61,29:91:44.94:0,45,1669 0/0:97,18:115:99:0,159,2352 0/1:51,27:79:27.60:28,0,1158 0/0:46,17:63:64.67:0,65,1043 0/0:91,23:114:99:0,154,2176 0/0:71,15:86:96.81:0,97,1649 0/0:90,18:108:99:0,183,2266 0/0:59,8:67:80.86:0,81,1351 0/0:38,6:44:84.18:0,84,963 0/0:46,16:62:99:0,99,1198 0/0:36,10:46:44.79:0,45,913 0/0:43,17:60:99:0,102,1220 0/0:36,11:47:78.19:0,78,941 0/0:93,21:114:99:0,141,1891 0/0:57,9:66:88.96:0,89,1373 0/0:39,10:49:90.11:0,90,1104 0/0:41,11:52:63.60:0,64,1056 0/0:46,15:61:99:0,120,1420 0/1:47,20:67:40.04:40,0,1210 0/0:47,16:63:78.58:0,79,1178 0/0:47,11:58:74.72:0,75,1242 0/0:41,10:51:90.19:0,90,1035 0/0:44,10:54:74.87:0,75,1258 0/0:42,16:58:74.70:0,75,1200 14 75245215 . G A 315.61 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.276;DP=1048;Dels=0.00;FS=5.867;HRun=0;HaplotypeScore=0.4652;InbreedingCoeff=-0.0121;MQ=59.17;MQ0=0;MQRankSum=-0.720;QD=15.03;ReadPosRankSum=-0.368 GT:AD:DP:GQ:PL 0/0:17,0:17:51.16:0,51,635 0/0:14,0:14:42.13:0,42,530 0/0:21,0:21:63.18:0,63,782 0/0:37,0:37:87.27:0,87,1187 0/0:17,0:17:45.13:0,45,603 0/0:20,0:20:51.17:0,51,691 0/0:22,0:22:54.18:0,54,749 0/0:26,0:26:63.20:0,63,866 0/0:24,0:24:60.19:0,60,769 0/0:20,0:20:48.15:0,48,626 0/0:25,0:25:72.23:0,72,920 0/0:17,0:17:48.15:0,48,614 0/0:17,0:17:51.16:0,51,647 0/0:24,0:24:60.18:0,60,774 0/0:74,0:74:99:0,178,2315 0/0:25,0:25:69.22:0,69,879 0/0:25,0:25:69.21:0,69,878 0/0:16,0:16:48.14:0,48,587 0/0:45,0:46:99:0,114,1470 0/0:52,0:52:99:0,129,1630 0/0:31,0:31:84.26:0,84,1051 0/0:35,0:35:90.28:0,90,1127 0/0:35,0:35:93.31:0,93,1287 0/0:12,0:12:33.10:0,33,435 0/0:22,0:22:60.20:0,60,818 0/0:17,0:17:42.14:0,42,571 0/0:18,0:18:51.16:0,51,635 0/0:13,0:13:39.12:0,39,493 0/1:7,14:21:99:362,0,172 0/0:25,0:25:66.21:0,66,836 0/0:20,0:20:51.16:0,51,653 0/0:39,0:39:99:0,102,1329 0/0:18,0:18:51.16:0,51,659 0/0:20,0:20:54.15:0,54,688 0/0:30,0:30:81.26:0,81,1056 0/0:28,0:28:75.24:0,75,971 0/0:32,0:32:78.25:0,78,1018 0/0:17,0:17:45.14:0,45,576 0/0:23,0:23:66.20:0,66,833 0/0:15,0:15:45.14:0,45,566 0/0:11,0:12:30.10:0,30,387 0/0:26,0:26:72.23:0,72,925 14 75245368 . C T 1788.34 . AC=11;AF=0.131;AN=84;BaseQRankSum=-5.065;DP=441;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.2347;InbreedingCoeff=-0.1555;MQ=58.95;MQ0=0;MQRankSum=2.130;QD=14.42;ReadPosRankSum=1.175 GT:AD:DP:GQ:PL 0/0:11,0:11:27.08:0,27,334 0/1:3,6:9:86.11:161,0,86 0/1:2,5:7:53.71:161,0,54 0/0:7,0:7:15.05:0,15,192 0/0:5,0:5:15.05:0,15,207 0/1:4,4:8:90.44:90,0,139 0/1:2,3:5:24.09:100,0,24 0/1:1,3:4:22.32:96,0,22 0/0:9,0:9:27.07:0,27,321 0/0:10,0:10:30.08:0,30,360 0/0:4,0:4:12.04:0,12,150 0/0:9,0:9:24.08:0,24,318 0/0:11,0:11:30.09:0,30,366 0/0:12,0:12:33.10:0,33,412 0/1:13,24:37:99:680,0,360 0/1:5,5:10:99:152,0,166 0/1:3,5:8:61.62:140,0,62 0/0:11,0:11:33.10:0,33,402 0/0:13,0:13:33.09:0,33,393 0/0:20,0:20:45.11:0,45,549 0/0:18,0:18:45.13:0,45,551 0/0:15,0:15:39.12:0,39,503 0/0:13,0:13:39.12:0,39,505 0/0:9,0:9:24.08:0,24,322 0/0:6,0:7:18.05:0,18,223 0/0:3,0:3:6.02:0,6,83 0/0:9,0:9:27.09:0,27,344 0/0:10,0:10:30.09:0,30,369 0/0:13,0:13:39.12:0,39,490 0/0:8,0:8:21.06:0,21,260 0/0:8,0:8:21.07:0,21,281 0/0:19,0:19:51.16:0,51,658 0/0:6,0:6:15.05:0,15,192 0/0:7,0:7:21.07:0,21,271 0/0:9,0:9:24.08:0,24,301 0/1:14,4:18:67.97:68,0,442 0/0:12,0:12:33.09:0,33,402 0/0:9,0:9:27.09:0,27,346 0/0:11,0:11:30.10:0,30,388 0/1:5,6:11:99:155,0,149 0/0:9,0:9:27.08:0,27,337 0/1:3,4:7:90.40:123,0,90 14 75279395 . T A 20906.53 . AC=51;AF=0.607;AN=84;BaseQRankSum=-8.451;DP=1269;Dels=0.00;FS=1.213;HRun=0;HaplotypeScore=0.8998;InbreedingCoeff=-0.1480;MQ=59.23;MQ0=0;MQRankSum=0.327;QD=18.82;ReadPosRankSum=0.821 GT:AD:DP:GQ:PL 0/1:12,14:27:99:307,0,370 1/1:0,21:21:57.14:655,57,0 0/1:9,19:28:99:522,0,250 0/1:19,21:40:99:517,0,478 1/1:1,35:37:99:1134,102,0 0/1:9,8:17:99:231,0,239 0/1:12,11:23:99:283,0,356 0/1:15,13:30:99:326,0,417 1/1:0,29:31:84.25:1011,84,0 1/1:0,29:30:78.20:924,78,0 0/1:13,16:32:99:465,0,364 1/1:0,15:15:42.11:476,42,0 0/1:9,15:26:99:382,0,198 1/1:0,19:20:57.13:646,57,0 0/1:37,52:92:99:1431,0,963 0/1:9,13:24:99:350,0,203 1/1:0,26:27:78.22:917,78,0 0/1:13,14:28:99:379,0,285 0/0:42,0:44:99:0,105,1272 0/1:33,19:53:99:522,0,1011 0/1:18,19:38:99:551,0,539 1/1:0,40:43:99:1244,105,0 0/0:34,0:34:96.29:0,96,1154 0/0:31,0:31:81.25:0,81,1019 0/1:16,8:26:99:214,0,463 0/1:14,8:22:99:211,0,345 0/1:7,8:15:99:205,0,221 0/0:21,0:22:60.13:0,60,705 0/1:9,11:20:99:291,0,220 1/1:0,16:16:48.09:518,48,0 0/1:12,11:24:99:300,0,302 0/1:28,21:50:99:557,0,722 0/1:19,19:38:99:483,0,529 0/1:11,14:25:99:325,0,312 0/0:26,0:27:75.21:0,75,920 1/1:0,19:19:51.15:620,51,0 0/1:24,20:46:99:509,0,689 0/1:15,20:35:99:543,0,375 1/1:0,21:21:60.15:681,60,0 1/1:0,34:37:90.27:1096,90,0 1/1:0,15:15:39.08:432,39,0 1/1:0,19:20:57.13:645,57,0 14 75360066 . C T 2247.94 . 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T C 913.59 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.614;DP=3036;Dels=0.00;FS=6.311;HRun=1;HaplotypeScore=2.1131;InbreedingCoeff=-0.0244;MQ=59.24;MQ0=0;MQRankSum=1.313;QD=11.28;ReadPosRankSum=-0.901 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,135,1668 0/0:40,0:40:93.28:0,93,1164 0/0:33,1:34:61.74:0,62,1085 0/0:172,0:172:99:0,460,5678 0/0:158,0:158:99:0,421,5276 0/0:141,0:141:99:0,367,4699 0/0:101,0:101:99:0,256,3269 0/0:97,0:97:99:0,262,3290 0/0:48,0:48:99:0,135,1642 0/0:43,0:43:99:0,111,1359 0/0:41,1:42:97.66:0,98,1393 0/1:28,18:46:99:473,0,895 0/1:17,18:35:99:503,0,499 0/0:64,1:65:99:0,166,2102 0/0:166,1:167:99:0,430,5292 0/0:30,0:30:78.22:0,78,961 0/0:48,0:48:99:0,129,1604 0/0:51,0:51:99:0,138,1685 0/0:81,0:81:99:0,220,2682 0/0:105,0:105:99:0,283,3488 0/0:105,0:105:99:0,277,3353 0/0:49,0:49:99:0,129,1554 0/0:183,0:183:99:0,487,6085 0/0:100,0:100:99:0,256,3207 0/0:103,0:104:99:0,286,3558 0/0:97,0:97:99:0,256,3247 0/0:49,0:50:99:0,138,1679 0/0:42,0:42:99:0,114,1434 0/0:41,1:42:99:0,120,1486 0/0:43,0:43:99:0,111,1416 0/0:43,0:43:99:0,120,1456 0/0:95,0:95:99:0,244,3003 0/0:63,0:63:99:0,165,2017 0/0:42,1:44:99:0,123,1522 0/0:49,0:50:99:0,126,1555 0/0:47,0:47:99:0,132,1603 0/0:92,0:92:99:0,244,2992 0/0:48,0:48:99:0,129,1589 0/0:44,0:44:99:0,114,1434 0/0:47,0:47:99:0,132,1579 0/0:42,0:42:99:0,117,1450 0/0:51,0:51:99:0,135,1660 14 75574087 . C T 34678.73 . AC=36;AF=0.429;AN=84;BaseQRankSum=14.933;DP=3134;DS;Dels=0.00;FS=4.309;HRun=0;HaplotypeScore=1.3495;InbreedingCoeff=-0.0694;MQ=59.39;MQ0=0;MQRankSum=0.465;QD=17.31;ReadPosRankSum=1.358 GT:AD:DP:GQ:PL 0/0:70,0:70:99:0,193,2215 0/0:69,0:69:99:0,193,2186 0/0:74,0:74:99:0,193,2270 0/1:43,42:85:99:1071,0,1243 1/1:0,75:75:99:2481,196,0 0/1:46,51:97:99:1484,0,1276 0/0:92,0:92:99:0,256,3226 0/1:48,40:88:99:1199,0,1410 1/1:0,67:67:99:2284,187,0 1/1:0,52:52:99:1810,150,0 0/1:42,28:70:99:746,0,1121 0/1:25,31:56:99:894,0,615 0/1:20,24:44:99:637,0,489 0/1:26,32:58:99:943,0,654 0/0:222,0:222:99:0,581,6857 0/1:31,18:49:99:510,0,911 0/1:45,26:71:99:724,0,1244 0/1:28,28:56:99:812,0,699 0/0:99,0:99:99:0,262,3045 0/1:42,47:89:99:1381,0,1034 0/1:46,41:87:99:1095,0,1167 1/1:0,54:54:99:1860,153,0 0/0:103,0:103:99:0,283,3572 0/0:89,0:89:99:0,238,2955 0/1:59,37:96:99:920,0,1753 0/1:52,30:82:99:777,0,1601 0/1:23,22:45:99:594,0,593 0/0:70,0:70:99:0,196,2204 0/1:27,34:61:99:1067,0,659 0/0:69,0:69:99:0,186,2153 0/0:57,0:57:99:0,165,1832 0/1:57,60:117:99:1601,0,1487 0/1:25,24:49:99:668,0,677 0/1:43,34:77:99:911,0,1160 0/0:57,0:57:99:0,156,1798 0/1:40,41:82:99:1096,0,1067 0/1:48,35:83:99:972,0,1184 0/1:30,31:61:99:950,0,758 0/0:60,0:60:99:0,165,1883 1/1:0,47:48:99:1664,135,0 1/1:1,49:50:99:1603,109,0 1/1:0,54:54:99:1926,156,0 14 75746668 . T G 674.56 . AC=13;AF=0.155;AN=84;BaseQRankSum=-13.930;DP=2708;DS;Dels=0.00;FS=2782.365;HRun=2;HaplotypeScore=1.6597;InbreedingCoeff=-0.1977;MQ=58.93;MQ0=0;MQRankSum=-0.920;QD=0.83;ReadPosRankSum=-22.379 GT:AD:DP:GQ:PL 0/1:39,12:51:52.32:52,0,1184 0/0:39,8:47:52.45:0,52,1221 0/0:39,5:44:99:0,113,1348 0/1:88,24:112:71.79:72,0,2667 0/0:77,17:94:32.54:0,33,2457 0/0:69,14:83:76.52:0,77,2298 0/1:44,12:56:31.64:32,0,1413 0/0:58,8:66:54.57:0,55,1796 0/0:54,11:65:4.96:0,5,1640 0/0:53,4:57:87.22:0,87,1743 0/0:44,6:50:39.87:0,40,1448 0/0:44,12:57:44.77:0,45,1300 0/0:30,2:32:52.46:0,52,984 0/0:53,6:59:99:0,122,1779 0/0:145,25:171:99:0,190,4400 0/1:52,15:67:99:152,0,1563 0/1:38,6:44:9.11:9,0,1166 0/0:47,9:56:17.08:0,17,1524 0/0:60,15:75:2.77:0,0,1805 0/0:92,17:109:81.62:0,82,2929 0/0:81,15:96:88.79:0,89,2487 0/1:54,9:63:21.02:21,0,1650 0/1:89,24:113:59.03:59,0,2709 0/1:50,7:57:27.84:28,0,1469 0/1:52,13:65:8.99:9,0,1449 0/0:48,8:56:99:0,116,1575 0/1:20,10:30:99:169,0,623 0/0:37,7:44:14.06:0,14,1100 0/0:40,12:52:35.41:0,35,1269 0/0:47,8:56:41.50:0,41,1501 0/0:56,4:60:69.91:0,70,1848 0/0:86,26:112:53.88:0,54,2574 0/0:52,12:64:19.94:0,20,1538 0/0:45,6:51:34.34:0,34,1523 0/0:51,11:62:30.68:0,31,1616 0/0:39,6:45:51.83:0,52,1302 0/1:50,11:61:67.81:68,0,1340 0/0:35,6:41:5.78:0,6,1065 0/1:38,10:48:20.93:21,0,1090 0/0:37,11:48:12.34:0,12,1083 0/1:35,13:48:99:127,0,1020 0/0:36,5:41:59.99:0,60,1238 14 75746690 . C T 49979.20 . AC=60;AF=0.714;AN=84;BaseQRankSum=16.635;DP=2218;Dels=0.00;FS=2.096;HRun=0;HaplotypeScore=1.1471;InbreedingCoeff=0.1833;MQ=58.81;MQ0=0;MQRankSum=3.085;QD=26.83;ReadPosRankSum=-1.032 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1463,120,0 1/1:0,40:41:99:1412,120,0 0/1:13,18:32:99:565,0,317 1/1:1,81:82:99:2902,224,0 1/1:0,79:79:99:2828,229,0 0/0:68,1:69:99:0,162,2320 0/1:22,25:48:99:761,0,665 0/1:26,29:55:99:861,0,778 1/1:0,52:52:99:1815,153,0 1/1:0,39:39:99:1431,117,0 1/1:1,45:46:99:1546,104,0 0/1:15,24:39:99:735,0,371 1/1:0,36:36:99:1175,99,0 0/0:59,0:59:99:0,165,1788 0/0:133,0:133:99:0,382,4137 0/1:31,25:56:99:730,0,856 0/1:18,23:41:99:659,0,452 1/1:0,40:40:99:1403,117,0 1/1:0,58:58:99:2027,168,0 1/1:1,92:93:99:3191,238,0 0/1:38,46:85:99:1336,0,977 0/0:52,0:52:99:0,150,1640 0/1:55,43:98:99:1201,0,1708 0/1:29,23:52:99:686,0,835 0/1:33,21:54:99:549,0,1023 0/0:41,1:42:88.57:0,89,1406 1/1:0,21:21:60.18:722,60,0 1/1:1,35:36:99:1176,99,0 1/1:1,33:34:71.72:1166,72,0 1/1:0,49:49:99:1711,144,0 1/1:0,41:41:99:1479,123,0 1/1:2,85:88:99:2982,250,0 0/1:24,28:52:99:861,0,635 1/1:0,46:46:99:1605,132,0 1/1:0,52:52:99:1778,147,0 0/1:21,22:43:99:695,0,534 1/1:0,51:53:99:1778,150,0 0/1:24,12:36:99:306,0,696 1/1:0,35:35:96.30:1173,96,0 1/1:1,42:43:99:1549,126,0 0/1:17,16:33:99:479,0,433 1/1:0,35:35:99:1245,102,0 14 76090978 . C T 1710.92 . AC=2;AF=0.024;AN=84;BaseQRankSum=-9.043;DP=4744;DS;Dels=0.00;FS=2.793;HRun=1;HaplotypeScore=2.1577;InbreedingCoeff=-0.0244;MQ=59.50;MQ0=1;MQRankSum=-0.139;QD=11.33;ReadPosRankSum=-1.041 GT:AD:DP:GQ:PL 0/1:45,39:84:99:1053,0,1337 0/1:39,28:67:99:720,0,1149 0/0:79,0:79:99:0,223,2829 0/0:182,0:182:99:0,482,6426 0/0:190,0:190:99:0,533,7211 0/0:145,0:145:99:0,397,5399 0/0:151,0:152:99:0,397,5375 0/0:157,0:159:99:0,430,5739 0/0:74,0:74:99:0,208,2641 0/0:102,0:102:99:0,280,3472 0/0:79,0:79:99:0,232,2915 0/0:84,0:84:99:0,238,3011 0/0:69,0:69:99:0,175,2221 0/0:57,0:57:99:0,163,2064 0/0:245,0:246:99:0,647,8053 0/0:81,0:81:99:0,232,2931 0/0:97,0:98:99:0,265,3377 0/0:91,0:91:99:0,247,3121 0/0:160,0:160:99:0,424,5247 0/0:163,0:164:99:0,430,5514 0/0:171,0:174:99:0,460,5754 0/0:94,0:94:99:0,259,3330 0/0:182,0:182:99:0,494,6669 0/0:155,0:155:99:0,400,5441 0/0:150,0:150:99:0,415,5566 0/0:134,0:136:99:0,367,4933 0/0:71,0:71:99:0,196,2526 0/0:84,0:84:99:0,226,2853 0/0:71,0:71:99:0,199,2508 0/0:64,0:64:99:0,184,2296 0/0:76,0:76:99:0,223,2811 0/0:151,0:151:99:0,391,4994 0/0:88,0:88:99:0,235,2993 0/0:87,0:87:99:0,250,3148 0/0:99,0:99:99:0,268,3385 0/0:101,0:101:99:0,274,3473 0/0:144,0:144:99:0,376,4698 0/0:115,0:116:99:0,325,4081 0/0:88,0:88:99:0,253,3186 0/0:84,0:84:99:0,241,3071 0/0:82,0:82:99:0,226,2885 0/0:84,0:84:99:0,238,3030 14 76543004 . G A 26990.09 . AC=35;AF=0.417;AN=84;BaseQRankSum=-26.923;DP=2558;Dels=0.00;FS=10.005;HRun=1;HaplotypeScore=1.0237;InbreedingCoeff=0.0694;MQ=59.31;MQ0=0;MQRankSum=1.134;QD=18.45;ReadPosRankSum=-0.274 GT:AD:DP:GQ:PL 0/1:25,14:39:99:413,0,720 0/0:53,0:53:99:0,132,1699 0/0:44,0:44:99:0,117,1538 1/1:0,71:71:99:2493,199,0 0/1:33,27:60:99:735,0,1037 0/0:82,0:82:99:0,214,2942 0/0:78,0:78:99:0,193,2631 0/0:79,0:79:99:0,205,2771 1/1:0,49:49:99:1716,141,0 0/1:22,24:46:99:631,0,675 1/1:0,51:51:99:1688,138,0 0/1:26,13:39:99:345,0,810 1/1:0,51:51:99:1540,120,0 0/0:42,0:42:99:0,114,1435 0/0:183,0:183:99:0,457,5993 0/0:42,0:42:99:0,111,1424 0/1:28,14:42:99:343,0,827 0/1:29,24:53:99:650,0,868 0/0:85,0:85:99:0,223,2852 0/1:54,38:92:99:1027,0,1522 0/1:50,48:98:99:1297,0,1342 0/1:23,20:43:99:486,0,623 0/1:33,54:87:99:1589,0,879 0/0:43,2:45:78.64:0,79,1597 0/0:79,0:79:99:0,199,2671 0/0:94,0:94:99:0,220,3061 0/1:20,21:41:99:627,0,556 0/1:26,26:52:99:728,0,784 0/0:44,0:44:99:0,111,1465 1/1:1,45:46:82.58:1429,83,0 0/1:26,23:49:99:602,0,776 0/0:96,0:96:99:0,250,3152 0/1:32,23:55:99:632,0,854 0/1:21,24:45:99:701,0,643 0/0:49,0:49:99:0,126,1625 1/1:0,45:45:99:1516,123,0 0/1:43,37:80:99:1015,0,1087 0/1:24,23:47:99:675,0,749 0/1:23,20:43:99:583,0,694 1/1:0,54:54:99:1802,144,0 1/1:0,40:40:99:1252,99,0 0/1:28,17:45:99:475,0,911 14 76957887 . T C 16083.69 . 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T C 490.20 . AC=5;AF=0.060;AN=84;BaseQRankSum=5.858;DP=396;Dels=0.00;FS=0.893;HRun=1;HaplotypeScore=0.1292;InbreedingCoeff=-0.0759;MQ=59.23;MQ0=0;MQRankSum=0.552;QD=10.89;ReadPosRankSum=-1.038 GT:AD:DP:GQ:PL 0/0:6,0:6:18.05:0,18,211 0/0:12,0:12:33.10:0,33,397 0/1:11,4:15:99:110,0,358 0/0:8,0:8:24.07:0,24,283 0/0:6,0:6:18.05:0,18,211 0/0:7,0:7:21.07:0,21,261 0/1:4,6:10:98.90:184,0,99 0/0:6,0:6:18.05:0,18,211 0/0:6,0:6:15.05:0,15,190 0/0:10,0:10:30.09:0,30,363 0/0:9,0:9:27.08:0,27,318 0/0:8,0:8:24.07:0,24,283 0/0:4,0:4:9.03:0,9,115 0/0:6,0:6:18.05:0,18,214 0/0:23,0:23:63.19:0,63,775 0/0:1,0:1:3.01:0,3,36 0/0:11,0:11:30.09:0,30,367 0/0:10,0:10:27.08:0,27,334 0/0:13,0:13:39.11:0,39,457 0/0:16,0:16:39.12:0,39,484 0/0:15,0:15:39.12:0,39,480 0/1:3,5:8:80.91:135,0,81 0/0:10,0:10:27.08:0,27,329 0/0:8,0:8:24.07:0,24,288 0/0:11,0:11:33.10:0,33,401 0/0:7,0:7:15.05:0,15,193 0/0:2,0:2:6.02:0,6,71 0/0:12,0:12:27.08:0,27,348 0/0:8,0:8:24.06:0,24,276 0/1:3,4:7:86.45:133,0,86 0/1:4,1:5:24.27:24,0,133 0/0:25,0:25:66.21:0,66,842 0/0:8,0:8:24.07:0,24,282 0/0:6,0:6:18.05:0,18,213 0/0:6,0:6:15.04:0,15,184 0/0:7,0:7:21.06:0,21,254 0/0:21,0:21:51.15:0,51,633 0/0:7,0:7:21.06:0,21,252 0/0:12,0:12:36.11:0,36,435 0/0:9,0:9:24.07:0,24,297 0/0:5,0:5:12.04:0,12,151 0/0:10,0:10:30.09:0,30,368 14 77697967 . A G 4835.48 . 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A G 72037.22 . 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C T 1367.63 . 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CA C 1406.42 . 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C A 73.12 . 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G A 1424.63 . 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T C 2660.11 . 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A G 109201.75 . 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A G 59.56 . 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A G 977.59 . 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G T 30.98 . 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C A 3984.50 . 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C T 1379.18 . 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C T 877.03 . 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G C 25.62 . 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C T 567.58 . 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C A 1050.49 . 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T C 16002.93 . 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C G 2143.08 . 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G A 12343.27 . 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T C 89775.93 . 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C G 132.05 . 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T C 110488.21 . AC=84;AF=1.000;AN=84;BaseQRankSum=-1.089;DP=3542;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.5026;InbreedingCoeff=-0.0000;MQ=59.17;MQ0=0;MQRankSum=-1.343;QD=31.19;ReadPosRankSum=0.620 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1926,177,0 1/1:0,67:67:99:2023,189,0 1/1:0,63:63:99:1806,168,0 1/1:0,165:165:99:5619,475,0 1/1:0,138:138:99:4782,397,0 1/1:0,158:158:99:4906,415,0 1/1:0,126:126:99:3998,337,0 1/1:0,123:123:99:3881,328,0 1/1:0,74:74:99:2148,199,0 1/1:0,59:59:99:1794,168,0 1/1:0,68:68:99:2058,189,0 1/1:0,76:76:99:2306,214,0 1/1:0,59:59:99:1746,165,0 1/1:0,77:77:99:2407,223,0 1/1:1,165:167:99:4989,433,0 1/1:0,49:49:99:1499,138,0 1/1:0,70:70:99:2079,192,0 1/1:0,65:65:99:1955,183,0 1/1:0,95:95:99:2935,274,0 1/1:0,135:135:99:3984,364,0 1/1:0,111:111:99:3457,319,0 1/1:0,71:71:99:2011,186,0 1/1:0,149:149:99:5112,424,0 1/1:0,106:106:99:3541,298,0 1/1:0,109:109:99:3760,316,0 1/1:0,102:102:99:3243,277,0 1/1:0,58:58:99:1819,168,0 1/1:0,58:58:99:1761,165,0 1/1:0,61:61:99:1919,177,0 1/1:0,58:58:99:1772,165,0 1/1:0,52:52:99:1632,153,0 1/1:0,92:92:99:2797,256,0 1/1:0,73:73:99:2197,205,0 1/1:0,66:66:99:2026,186,0 1/1:0,67:67:99:2102,195,0 1/1:0,58:58:99:1819,168,0 1/1:0,77:78:99:2290,216,0 1/1:0,49:49:99:1494,138,0 1/1:0,59:59:99:1848,171,0 1/1:0,64:64:99:1900,177,0 1/1:0,42:42:99:1191,111,0 1/1:0,61:61:99:1957,180,0 14 88431898 . C T 28701.18 . AC=32;AF=0.381;AN=84;BaseQRankSum=-16.269;DP=2775;DS;Dels=0.00;FS=1.113;HRun=1;HaplotypeScore=1.7460;InbreedingCoeff=-0.0096;MQ=59.03;MQ0=1;MQRankSum=1.204;QD=17.75;ReadPosRankSum=1.721 GT:AD:DP:GQ:PL 0/1:30,27:57:99:707,0,971 1/1:0,57:57:99:2005,163,0 0/1:28,22:50:99:655,0,870 0/1:54,46:100:99:1358,0,1766 0/0:87,0:87:99:0,250,3363 0/1:45,39:84:99:1151,0,1481 0/1:34,43:77:99:1417,0,1120 0/0:78,0:78:99:0,214,2828 0/1:33,25:58:99:720,0,1056 0/1:30,33:63:99:935,0,907 0/1:26,26:52:99:817,0,787 0/1:29,21:50:99:608,0,928 0/1:21,20:41:99:578,0,636 0/1:28,21:49:99:630,0,846 0/0:184,0:184:99:0,491,6173 0/0:36,0:36:99:0,105,1335 0/0:54,0:54:99:0,162,2046 0/0:51,0:51:99:0,141,1804 0/0:77,0:78:99:0,211,2682 0/0:77,1:78:99:0,211,2715 0/0:73,0:73:99:0,196,2520 0/1:24,22:46:99:600,0,757 0/1:67,46:113:99:1237,0,2234 0/0:75,0:75:99:0,214,2811 0/0:69,0:70:99:0,193,2586 0/1:48,44:92:99:1389,0,1505 1/1:0,34:34:99:1249,99,0 0/1:37,23:60:99:664,0,1111 1/1:0,56:56:99:2012,163,0 0/1:32,26:58:99:688,0,946 0/0:41,0:41:99:0,123,1534 0/0:96,0:96:99:0,253,3267 0/1:28,40:68:99:1217,0,834 0/0:58,0:58:99:0,163,2045 0/0:41,2:43:49.47:0,49,1424 0/1:39,29:68:99:817,0,1203 0/0:56,0:56:99:0,156,1941 0/1:24,33:57:99:999,0,666 0/1:33,30:63:99:886,0,980 1/1:0,57:57:99:1960,156,0 1/1:2,56:58:80.89:1775,81,0 1/1:1,48:49:99:1627,105,0 14 88431947 . C T 162.91 . AC=9;AF=0.107;AN=84;BaseQRankSum=-11.343;DP=2083;Dels=0.00;FS=396.013;HRun=1;HaplotypeScore=1.1708;InbreedingCoeff=-0.1414;MQ=58.71;MQ0=0;MQRankSum=-0.567;QD=0.34;ReadPosRankSum=-9.600 GT:AD:DP:GQ:PL 0/0:23,11:34:29.38:0,29,720 0/0:26,14:40:57.15:0,57,666 0/1:25,20:45:30.09:30,0,632 0/0:65,45:110:99:0,125,1953 0/0:37,39:76:78:0,78,1365 0/0:43,25:68:62.04:0,62,1416 0/0:37,29:66:0.82:7,0,1155 0/0:39,25:64:99:0,101,1288 0/1:25,17:42:24.73:25,0,659 0/0:23,16:39:60.17:0,60,726 0/1:20,16:36:9.73:10,0,356 0/0:22,12:34:22.80:0,23,590 0/0:22,18:40:26.74:0,27,651 0/0:28,11:39:35.12:0,35,702 0/1:76,48:124:10.97:11,0,1790 0/0:23,10:33:19.59:0,20,533 0/0:30,11:41:40.88:0,41,848 0/0:22,15:37:28.53:0,29,638 0/0:28,24:52:37.33:0,37,774 0/0:30,22:52:68.93:0,69,790 0/0:26,16:42:11.68:0,12,843 0/0:18,17:35:16.47:0,16,458 0/1:45,39:84:99:137,0,1412 0/0:46,19:65:95.69:0,96,1493 0/0:43,28:71:74.89:0,75,1333 0/0:41,29:70:99:0,108,1405 0/1:18,14:32:13.90:14,0,461 0/1:17,26:43:8.07:8,0,434 0/0:19,16:35:47.50:0,48,548 0/0:24,19:43:35.52:0,36,701 0/0:23,17:40:20.69:0,21,558 0/0:37,12:49:60.18:0,60,733 0/0:28,14:42:29.50:0,29,624 0/0:26,12:38:1.03:6,0,598 0/0:35,17:52:52.01:0,52,989 0/1:26,19:45:24.28:24,0,708 0/0:19,11:30:39.12:0,39,474 0/0:21,18:39:14.55:0,15,484 0/0:25,14:39:26.74:0,27,649 0/0:26,14:40:69.21:0,69,846 0/0:28,17:45:63.17:0,63,733 0/1:18,13:32:19.36:19,0,479 14 88459434 . G T 203.56 . AC=8;AF=0.100;AN=80;BaseQRankSum=-4.562;DP=171;Dels=0.00;FS=5.274;HRun=0;HaplotypeScore=0.1856;InbreedingCoeff=0.0064;MQ=51.81;MQ0=0;MQRankSum=-1.969;QD=7.83;ReadPosRankSum=1.651 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,69 0/0:3,0:3:9.03:0,9,111 0/0:1,0:1:3.01:0,3,33 0/0:4,0:4:12.03:0,12,141 0/0:14,0:15:42.13:0,42,543 0/0:2,0:2:6.02:0,6,85 0/1:4,2:7:48.82:49,0,120 0/0:5,0:5:15.05:0,15,184 0/1:2,1:3:24.41:24,0,69 0/0:1,0:1:3.01:0,3,40 0/1:1,1:2:27.42:27,0,33 0/0:1,0:1:3.01:0,3,33 ./. 0/0:7,0:7:15.05:0,15,183 0/0:5,0:5:12.04:0,12,146 0/0:4,0:4:12.04:0,12,153 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.02:0,9,103 0/0:5,0:5:15.04:0,15,174 0/0:10,0:10:30.09:0,30,377 0/0:4,0:5:9.03:0,9,109 0/0:6,0:8:18.06:0,18,233 0/0:6,0:6:18.05:0,18,216 0/0:7,0:8:15.05:0,15,195 0/0:4,0:4:12.03:0,12,147 0/0:7,0:8:18.06:0,18,239 ./. 0/0:2,0:2:6.02:0,6,66 0/0:3,0:3:9.03:0,9,108 0/0:4,0:5:12.04:0,12,148 0/0:5,0:5:15.05:0,15,183 0/0:4,0:4:9.03:0,9,115 0/0:4,0:4:12.03:0,12,139 1/1:0,3:3:8.99:81,9,0 0/1:1,2:3:24.41:57,0,24 0/0:4,0:5:12.03:0,12,143 0/1:1,3:4:21.47:56,0,21 0/1:2,1:4:24.41:24,0,55 0/0:1,0:1:3.01:0,3,36 0/0:4,0:4:12.04:0,12,148 0/0:2,0:2:5.99:0,6,58 0/0:2,0:2:6.02:0,6,73 14 88459448 . C G 296.94 . AC=8;AF=0.103;AN=78;BaseQRankSum=-0.554;DP=177;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.2096;InbreedingCoeff=-0.0487;MQ=51.84;MQ0=0;MQRankSum=-4.461;QD=8.48;ReadPosRankSum=1.340 GT:AD:DP:GQ:PL 0/0:4,0:4:9.03:0,9,122 0/0:4,0:4:12.04:0,12,145 ./. 0/0:7,0:7:21.06:0,21,250 0/0:15,0:15:42.13:0,42,542 0/0:2,0:2:6.02:0,6,79 0/1:3,2:5:54.83:55,0,65 0/0:5,0:5:9.03:0,9,118 0/1:2,1:3:24.41:24,0,60 0/0:1,0:1:3.01:0,3,40 0/1:2,1:3:16.66:17,0,69 0/0:3,0:3:9.03:0,9,109 ./. 0/0:5,0:5:12.04:0,12,140 0/0:7,0:7:15.05:0,15,195 0/0:6,0:6:18.06:0,18,229 0/0:2,0:2:6.02:0,6,68 0/0:3,0:3:9.03:0,9,106 0/0:3,0:3:9.03:0,9,103 0/0:10,0:10:24.06:0,24,282 0/0:6,0:6:15.04:0,15,186 0/0:7,0:7:18.04:0,18,205 0/0:5,0:5:15.05:0,15,187 0/0:6,0:6:15.05:0,15,190 0/1:3,1:4:21.40:21,0,101 0/0:6,0:6:18.06:0,18,234 ./. 0/0:2,0:2:6.02:0,6,70 0/0:2,0:2:6.01:0,6,63 0/0:3,0:3:6.01:0,6,67 0/0:6,0:6:18.05:0,18,201 0/0:4,0:4:9.03:0,9,113 0/0:3,0:3:6.02:0,6,70 0/1:0,3:3:1.76:36,3,0 0/1:2,4:6:51.83:91,0,52 0/0:5,0:5:15.04:0,15,175 0/1:2,5:7:50.25:114,0,50 0/1:2,2:4:54.83:55,0,57 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.03:0,9,113 0/0:4,0:4:9.03:0,9,113 0/0:2,0:2:6.02:0,6,69 14 88459467 . C G 339.30 . AC=6;AF=0.079;AN=76;BaseQRankSum=2.349;DP=147;Dels=0.00;FS=1.592;HRun=1;HaplotypeScore=0.1206;InbreedingCoeff=-0.0066;MQ=54.58;MQ0=0;MQRankSum=-3.911;QD=13.57;ReadPosRankSum=-0.164 GT:AD:DP:GQ:PL 0/0:3,0:4:9.02:0,9,101 0/0:5,0:5:12.04:0,12,144 ./. 0/0:6,0:6:15.05:0,15,186 0/0:4,0:4:12.03:0,12,135 ./. 0/1:2,2:4:48.10:48,0,50 0/0:2,0:2:6.02:0,6,67 0/0:1,0:1:3.01:0,3,32 0/0:1,0:1:3.01:0,3,32 0/0:1,0:1:2.98:0,3,22 0/0:3,0:3:9.03:0,9,112 0/0:1,0:1:3.01:0,3,33 0/0:5,0:5:15.05:0,15,187 0/0:8,0:8:21.07:0,21,273 0/0:5,0:5:12.04:0,12,154 0/0:4,0:4:12.03:0,12,140 0/0:1,0:1:3.01:0,3,31 0/0:2,0:2:6.02:0,6,70 0/0:11,0:11:30.08:0,30,361 0/0:4,0:5:9.01:0,9,89 0/0:10,0:10:30.09:0,30,361 0/0:2,0:2:6.02:0,6,79 0/0:3,0:3:6.02:0,6,80 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.02:0,6,78 0/0:1,0:1:3.01:0,3,36 0/0:1,0:1:3.01:0,3,35 ./. 0/0:4,0:4:12.04:0,12,144 0/0:6,0:6:18.05:0,18,216 0/0:5,0:5:15.02:0,15,172 0/0:4,0:4:9.03:0,9,107 1/1:0,1:1:3.01:39,3,0 0/1:3,4:7:49.60:103,0,50 0/0:2,0:2:6.02:0,6,78 0/1:3,6:9:12.46:149,0,12 0/1:1,3:4:19.52:93,0,20 0/0:3,0:3:9.03:0,9,105 0/0:3,0:3:6.02:0,6,78 0/0:5,0:5:15.05:0,15,186 ./. 14 88459493 . G T 215.21 . AC=12;AF=0.158;AN=76;BaseQRankSum=-3.757;DP=151;Dels=0.00;FS=208.017;HRun=1;HaplotypeScore=0.1803;InbreedingCoeff=-0.1448;MQ=56.04;MQ0=0;MQRankSum=-0.178;QD=4.48;ReadPosRankSum=-6.906 GT:AD:DP:GQ:PL 0/0:3,0:3:9.03:0,9,111 0/0:5,2:7:15.05:0,15,188 ./. 0/0:5,1:6:15.05:0,15,200 ./. ./. 0/0:3,0:3:6.02:0,6,71 ./. 0/1:1,2:3:28.33:28,0,33 0/0:2,0:2:6.02:0,6,77 0/1:1,1:2:31.78:32,0,33 0/0:2,0:2:6.02:0,6,71 0/0:1,0:1:3.01:0,3,33 0/0:5,0:5:15.05:0,15,195 0/0:13,2:15:35.13:0,35,417 0/0:4,1:5:12.03:0,12,140 0/0:5,0:5:15.05:0,15,192 1/1:0,1:1:3.01:32,3,0 0/0:2,1:3:5.75:0,6,49 0/1:7,1:8:12.90:13,0,241 0/0:3,0:3:9.03:0,9,109 0/1:6,3:9:48.59:49,0,149 0/1:2,2:4:61.89:62,0,67 0/0:3,0:3:9.02:0,9,101 0/0:1,0:1:3.01:0,3,40 0/0:1,0:1:3.01:0,3,38 0/0:2,0:2:6.02:0,6,76 0/1:3,1:4:18.55:19,0,109 0/0:1,0:1:3.01:0,3,39 0/0:4,0:4:12.04:0,12,153 0/1:3,3:6:26.54:27,0,101 0/1:4,2:6:24.07:24,0,95 0/0:3,0:3:9.03:0,9,117 0/0:3,0:3:9.03:0,9,113 0/0:6,0:6:15.05:0,15,196 0/0:4,0:4:12.04:0,12,157 0/1:2,1:3:27.95:28,0,58 0/0:3,1:4:7.27:0,7,80 0/1:1,1:2:27.42:31,0,27 0/0:3,1:4:7.57:0,8,78 0/0:4,0:4:12.04:0,12,154 0/0:2,0:2:6.02:0,6,79 14 88938652 . A G 15735.35 . AC=20;AF=0.238;AN=84;BaseQRankSum=-4.536;DP=3060;Dels=0.00;FS=18.597;HRun=0;HaplotypeScore=0.7221;InbreedingCoeff=0.2125;MQ=59.16;MQ0=0;MQRankSum=2.081;QD=16.34;ReadPosRankSum=-2.981 GT:AD:DP:GQ:PL 0/1:31,25:56:99:648,0,901 1/1:1,46:47:87.21:1384,87,0 0/1:28,13:41:99:331,0,876 0/1:64,48:112:99:1311,0,1680 0/1:54,38:92:99:1057,0,1601 0/0:117,0:117:99:0,298,3853 0/0:107,0:107:99:0,289,3557 0/0:87,0:87:99:0,226,2829 0/0:57,0:57:99:0,156,1878 0/0:58,1:59:99:0,127,1921 0/0:62,0:62:99:0,175,2096 0/0:61,0:61:99:0,162,1977 0/0:56,0:56:99:0,159,1934 0/0:62,0:62:99:0,159,1977 0/0:222,0:222:99:0,551,6832 0/1:22,22:44:99:566,0,627 0/0:56,2:58:99:0,115,1837 0/1:29,26:55:99:687,0,889 0/1:41,32:73:99:736,0,1154 0/1:50,34:84:99:863,0,1324 0/0:87,0:87:99:0,220,2747 0/0:53,0:53:99:0,153,1822 0/0:124,0:124:99:0,319,3948 0/0:101,0:101:99:0,262,3272 0/0:109,0:109:99:0,277,3467 0/0:93,0:93:99:0,229,2910 0/1:23,20:43:99:512,0,680 1/1:0,63:63:99:1975,168,0 0/0:53,0:53:99:0,153,1828 0/0:60,0:60:99:0,175,2087 0/1:16,28:44:99:720,0,459 0/0:90,0:90:99:0,232,2886 0/1:29,23:52:99:658,0,759 0/0:66,0:67:99:0,184,2257 0/0:58,1:59:99:0,124,1903 0/0:51,0:51:99:0,144,1746 0/0:75,0:76:99:0,199,2453 0/0:69,0:69:99:0,196,2360 0/0:56,0:56:99:0,159,1923 1/1:1,61:62:99:2022,141,0 0/1:23,23:46:99:633,0,656 1/1:0,49:49:99:1633,138,0 14 88940031 . G T 65.09 . AC=3;AF=0.036;AN=84;BaseQRankSum=-18.639;DP=4138;DS;Dels=0.00;FS=1162.900;HRun=1;HaplotypeScore=4.7963;InbreedingCoeff=-0.0382;MQ=59.39;MQ0=0;MQRankSum=1.317;QD=0.13;ReadPosRankSum=-15.909 GT:AD:DP:GQ:PL 0/0:59,12:71:88.88:0,89,1795 0/0:61,10:71:51.22:0,51,1591 0/0:62,9:71:99:0,102,1661 0/0:148,43:191:99:0,158,4337 0/0:134,36:170:99:0,212,4103 0/0:122,16:138:99:0,311,3930 0/0:113,16:129:99:0,121,3039 0/0:114,15:129:99:0,180,3411 0/0:50,11:61:36.28:0,36,1366 0/0:57,19:76:73.96:0,74,1408 0/0:42,16:58:15.17:0,15,1282 0/0:57,9:66:79.26:0,79,1706 0/0:56,9:65:99:0,122,1670 0/0:57,22:79:19.61:0,20,1457 0/1:199,51:250:49.25:49,0,5253 0/0:36,10:46:45.11:0,45,1140 0/0:72,15:88:99:0,101,1767 0/0:63,11:74:28.98:0,29,1699 0/1:102,22:124:65.05:65,0,2553 0/0:138,20:158:99:0,202,3758 0/0:94,29:123:45.43:0,45,2575 0/0:62,15:77:99:0,141,1689 0/0:152,29:182:99:0,182,4544 0/0:93,14:107:99:0,118,2485 0/0:143,23:166:99:0,261,4247 0/0:126,13:139:99:0,316,4042 0/0:46,8:54:84.63:0,85,1292 0/0:57,11:68:58.48:0,58,1728 0/0:56,11:67:99:0,108,1570 0/0:69,13:82:87.88:0,88,1947 0/0:59,10:70:13.53:0,14,1378 0/0:105,0:105:99:0,259,3142 0/0:70,10:80:99:0,125,1775 0/0:56,16:72:24.08:0,24,1491 0/0:64,9:73:78.16:0,78,1845 0/0:79,7:86:99:0,145,2096 0/1:89,22:112:26.05:26,0,2256 0/0:62,12:74:99:0,101,1744 0/0:47,11:58:59.21:0,59,1341 0/0:59,9:68:84.19:0,84,1567 0/0:47,12:59:23.88:0,24,1249 0/0:71,13:84:99:0,147,1936 14 89088983 . C CT 431.37 . AC=6;AF=0.071;AN=84;BaseQRankSum=0.188;DP=3798;DS;FS=997.410;HRun=2;HaplotypeScore=249.6726;InbreedingCoeff=-0.0811;MQ=58.72;MQ0=0;MQRankSum=1.149;QD=0.50;ReadPosRankSum=-16.338 GT:AD:DP:GQ:PL 0/0:63,0:63:48.24:0,48,1189 0/0:59,0:59:59.93:0,60,1191 0/0:57,0:57:15.29:0,15,887 0/1:165,0:163:99:187,0,1833 0/1:164,0:164:22.85:23,0,1952 0/0:117,0:115:70.18:0,70,1568 0/0:115,0:112:55.86:0,56,1594 0/0:114,0:112:93.16:0,93,1548 0/0:70,0:70:79.65:0,80,1420 0/0:51,0:51:45.84:0,46,890 0/0:66,0:66:40.38:0,40,895 0/0:59,0:59:46.51:0,47,1067 0/0:57,0:57:26.02:0,26,782 0/0:68,0:68:73.28:0,73,1122 0/1:220,0:220:39.78:40,0,2847 0/0:64,0:64:60.45:0,60,1283 0/0:70,0:70:86.15:0,86,1192 0/0:59,0:59:59.43:0,59,1155 0/1:145,0:145:99:205,0,1945 0/0:148,0:148:89.58:0,90,2684 0/0:129,0:129:30.12:0,30,2332 0/0:93,0:93:69.80:0,70,1563 0/0:160,0:160:76.18:0,76,2164 0/0:98,0:96:73.06:0,73,1493 0/0:132,0:129:56.17:0,56,1872 0/0:97,0:97:84.69:0,85,1603 0/0:43,0:43:33.61:0,34,692 0/0:61,0:61:55.91:0,56,1106 0/0:61,0:61:18.40:0,18,1006 0/0:74,0:74:53.39:0,53,1218 0/0:57,0:57:28.22:0,28,905 0/0:170,0:170:99:0,260,3646 0/0:97,0:97:99:0,108,1771 0/0:57,0:57:78.50:0,79,1042 0/0:45,0:45:11.10:0,11,708 0/0:72,0:72:40.97:0,41,1251 0/1:119,0:119:62.05:62,0,1461 0/0:67,0:67:60.14:0,60,1020 0/1:49,0:49:29.79:30,0,685 0/0:52,20:72:6.83:0,7,1222 0/0:58,0:58:17.70:0,18,991 0/0:56,0:56:52.32:0,52,1130 14 89088986 . G T 6104.76 . AC=38;AF=0.452;AN=84;BaseQRankSum=-25.547;DP=3521;DS;Dels=0.00;FS=3200.000;HRun=2;HaplotypeScore=2.2840;InbreedingCoeff=-0.8285;MQ=59.07;MQ0=0;MQRankSum=-0.835;QD=1.96;ReadPosRankSum=-27.559 GT:AD:DP:GQ:PL 0/1:35,25:60:99:124,0,987 0/1:37,20:57:27.55:28,0,1083 0/1:28,25:53:89.28:89,0,734 0/1:60,93:153:99:534,0,1675 0/1:70,78:148:99:398,0,1991 0/1:55,58:113:99:114,0,1436 0/1:50,61:111:99:247,0,1466 0/1:47,60:107:99:177,0,1341 0/1:41,25:66:40.67:41,0,1167 0/1:27,17:44:78.59:79,0,729 0/1:34,29:63:93.28:93,0,929 0/1:32,22:54:31.15:31,0,887 0/1:27,20:49:70.71:71,0,719 0/1:37,24:61:43.71:44,0,1030 0/1:98,94:192:99:673,0,2542 0/1:37,21:58:14.10:14,0,1087 0/1:36,25:61:99:107,0,854 0/1:35,20:55:99:150,0,868 0/1:71,62:133:99:469,0,1696 0/1:84,54:138:99:155,0,2201 0/1:76,45:121:99:147,0,2128 0/0:51,35:86:7.68:0,8,1352 0/1:74,84:158:99:496,0,2273 0/1:50,39:89:99:217,0,1393 0/1:65,63:129:99:222,0,1846 0/0:52,44:96:36.14:0,36,1567 0/1:23,17:40:87.85:88,0,624 0/1:32,24:56:47.27:47,0,951 0/1:31,26:57:81.03:81,0,851 0/1:37,33:70:99:197,0,1063 0/1:32,25:57:90.07:90,0,867 0/0:114,46:160:43.06:0,43,3080 0/1:54,39:93:11.25:11,0,1404 0/1:29,24:53:67.46:67,0,844 0/1:23,19:42:99:139,0,597 0/1:44,27:71:14.08:14,0,1283 0/1:59,40:99:99:245,0,1214 0/1:39,22:61:75.48:75,0,960 0/1:25,20:45:89.01:89,0,613 0/1:37,15:52:99:145,0,1098 0/0:36,22:58:11.83:0,12,976 0/1:33,19:52:93.35:93,0,1031 14 90489419 . CTGG C 2485.50 . AC=7;AF=0.083;AN=84;BaseQRankSum=11.667;DP=1249;FS=4.987;HRun=0;HaplotypeScore=104.4401;InbreedingCoeff=-0.0909;MQ=58.86;MQ0=0;MQRankSum=-0.974;QD=16.04;ReadPosRankSum=1.184 GT:AD:DP:GQ:PL 0/0:29,0:29:84.29:0,84,1983 0/0:22,0:22:63.22:0,63,1473 0/1:16,6:22:99:260,0,865 0/0:27,0:27:78.27:0,78,1796 0/0:17,0:17:51.17:0,51,1138 0/1:17,7:24:99:296,0,945 0/0:18,0:18:51.18:0,51,1196 0/1:10,12:22:99:552,0,608 0/0:34,0:34:99:0,99,2327 0/0:25,0:25:50.27:0,50,1679 0/0:24,0:24:72.24:0,72,1665 0/1:7,6:13:99:288,0,254 0/0:26,0:26:72.23:0,72,1592 0/1:14,11:25:99:510,0,851 0/0:94,0:94:99:0,265,6118 0/0:22,0:22:60.21:0,60,1420 0/0:28,0:28:84.29:0,84,1981 0/0:24,0:24:69.24:0,69,1633 0/0:51,0:51:99:0,144,3374 0/0:67,0:67:99:0,202,4668 0/0:60,0:60:99:0,166,3796 0/0:46,0:46:99:0,135,3195 0/0:29,0:29:87.30:0,87,2052 0/0:15,0:13:45.15:0,45,1065 0/0:21,0:21:60.21:0,60,1420 0/0:25,0:24:75.26:0,75,1774 0/0:18,0:18:54.19:0,54,1252 0/0:30,0:30:90.31:0,90,2130 0/0:24,0:24:72.25:0,72,1705 0/1:10,7:17:99:322,0,592 0/0:13,0:13:39.13:0,39,907 0/0:47,0:47:99:0,141,3303 0/1:23,9:32:99:380,0,1521 0/0:21,0:21:60.20:0,60,1377 0/0:26,0:26:78.27:0,78,1820 0/0:23,0:23:63.20:0,63,1402 0/0:59,0:59:99:0,166,3881 0/0:30,0:30:87.30:0,87,2059 0/0:24,0:24:69.24:0,69,1635 0/0:27,0:27:78.25:0,78,1745 0/0:20,0:20:57.19:0,57,1305 0/0:28,0:28:78.27:0,78,1837 14 90752754 . G A 800.51 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.184;DP=2153;Dels=0.00;FS=1.548;HRun=0;HaplotypeScore=1.3994;InbreedingCoeff=-0.0120;MQ=58.87;MQ0=0;MQRankSum=0.544;QD=16.34;ReadPosRankSum=0.727 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,111,1295 0/0:36,0:36:99:0,99,1177 0/0:40,0:40:99:0,111,1233 0/0:85,0:85:99:0,238,2959 0/0:72,0:72:99:0,202,2595 0/0:70,0:70:99:0,178,2232 0/0:51,0:51:99:0,144,1879 0/0:67,0:67:99:0,193,2426 0/0:30,0:30:87.21:0,87,1020 0/0:44,0:44:99:0,120,1401 0/0:51,0:51:99:0,150,1753 0/0:37,0:37:99:0,99,1207 0/0:37,0:37:99:0,105,1204 0/0:53,0:53:99:0,150,1781 0/0:113,0:113:99:0,286,3380 0/0:28,0:28:81.22:0,81,942 0/0:53,0:53:99:0,150,1733 0/1:20,29:49:99:847,0,499 0/0:46,0:46:99:0,126,1472 0/0:67,0:67:99:0,177,2115 0/0:56,0:56:99:0,150,1761 0/0:36,0:36:99:0,99,1134 0/0:86,0:86:99:0,232,2992 0/0:54,0:54:99:0,135,1720 0/0:75,0:75:99:0,193,2423 0/0:56,0:56:99:0,147,1897 0/0:40,0:40:99:0,108,1218 0/0:33,0:33:90.21:0,90,1039 0/0:43,0:43:99:0,114,1300 0/0:38,0:38:99:0,108,1278 0/0:37,0:37:99:0,99,1177 0/0:59,0:61:99:0,153,1845 0/0:49,0:49:99:0,135,1594 0/0:43,0:43:99:0,120,1392 0/0:46,0:46:99:0,132,1527 0/0:52,0:52:99:0,138,1650 0/0:56,0:56:99:0,156,1831 0/0:49,0:49:99:0,138,1654 0/0:39,0:39:99:0,105,1229 0/0:44,0:44:99:0,120,1403 0/0:46,0:46:99:0,120,1413 0/0:44,0:44:99:0,132,1568 14 91338468 . C T 1061.77 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.492;DP=5042;DS;Dels=0.00;FS=2.134;HRun=1;HaplotypeScore=3.1593;InbreedingCoeff=-0.0120;MQ=59.31;MQ0=0;MQRankSum=-0.812;QD=14.16;ReadPosRankSum=-0.527 GT:AD:DP:GQ:PL 0/0:102,0:102:99:0,301,3387 0/0:114,0:114:99:0,331,3677 0/0:104,0:104:99:0,301,3450 0/0:145,0:146:99:0,418,5165 0/0:154,0:154:99:0,427,5400 0/0:129,0:129:99:0,385,4722 0/0:102,0:102:99:0,286,3584 0/0:125,0:125:99:0,340,4256 0/0:108,0:108:99:0,301,3459 0/0:94,0:94:99:0,271,3056 0/0:100,0:100:99:0,289,3272 0/0:100,0:100:99:0,286,3235 0/1:36,39:75:99:1108,0,944 0/0:97,0:97:99:0,268,3048 0/0:249,1:250:99:0,683,8058 0/0:97,0:97:99:0,283,3211 0/0:107,0:107:99:0,292,3297 0/0:100,1:101:99:0,263,3301 0/0:160,0:160:99:0,454,5092 0/0:155,0:155:99:0,427,4904 0/0:172,0:172:99:0,478,5477 0/0:114,0:115:99:0,331,3766 0/0:174,0:175:99:0,494,6157 0/0:119,0:119:99:0,343,4157 0/0:136,0:136:99:0,391,4846 0/0:130,0:130:99:0,376,4589 0/0:68,0:68:99:0,195,2240 0/0:118,0:118:99:0,343,3845 0/0:87,0:87:99:0,247,2804 0/0:111,0:111:99:0,310,3519 0/0:104,0:104:99:0,295,3412 0/0:143,0:143:99:0,400,4636 0/0:123,0:123:99:0,346,3973 0/0:118,0:118:99:0,349,3893 0/0:93,0:93:99:0,268,3046 0/0:109,0:109:99:0,304,3510 0/0:168,0:168:99:0,457,5230 0/0:109,0:109:99:0,316,3565 0/0:114,0:114:99:0,328,3682 0/0:95,0:96:99:0,271,3099 0/0:105,0:105:99:0,295,3370 0/0:109,0:109:99:0,319,3623 14 91413787 . G C 2606.85 . 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C T 29345.25 . 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C T 11223.44 . 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G A 4156.85 . 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C T 2353.01 . 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T C 2387.38 . 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A G 3949.57 . 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G A 4755.86 . 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C T 716.62 . 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C T 3984.65 . 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G A 1928.21 . 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C T 51955.77 . AC=21;AF=0.250;AN=84;BaseQRankSum=-21.200;DP=7056;DS;Dels=0.00;FS=2.721;HRun=1;HaplotypeScore=2.1637;InbreedingCoeff=0.1746;MQ=59.57;MQ0=0;MQRankSum=0.613;QD=17.76;ReadPosRankSum=-0.740 GT:AD:DP:GQ:PL 0/0:122,0:122:99:0,316,3965 0/0:137,0:137:99:0,367,4625 0/0:113,0:113:99:0,313,3907 0/1:136,109:245:99:3015,0,4266 0/1:127,121:248:99:3289,0,4197 1/1:0,244:244:99:8374,644,0 0/1:136,101:238:99:2762,0,4206 1/1:1,247:249:99:8220,615,0 0/0:148,0:148:99:0,397,5006 0/0:108,0:108:99:0,292,3686 0/0:163,0:163:99:0,436,5500 1/1:0,116:116:99:3873,319,0 0/1:76,48:124:99:1165,0,2367 0/1:55,50:105:99:1416,0,1542 0/0:247,1:250:99:0,628,8169 0/1:59,47:106:99:1239,0,1663 0/0:126,0:126:99:0,355,4375 0/0:111,0:111:99:0,289,3643 0/0:248,1:250:99:0,641,8127 0/0:247,0:247:99:0,638,8148 0/1:119,124:244:99:3318,0,3243 0/1:92,74:166:99:2020,0,2518 0/0:247,0:247:99:0,656,8877 0/0:241,0:241:99:0,590,8104 0/0:246,0:246:99:0,653,8869 0/0:212,0:212:99:0,530,7212 0/0:95,0:95:99:0,271,3396 0/0:124,0:124:99:0,355,4424 0/1:58,55:113:99:1474,0,1688 0/0:124,0:124:99:0,346,4312 0/0:116,0:116:99:0,322,4086 0/1:128,121:249:99:3193,0,3691 0/0:189,1:190:99:0,451,6154 0/1:54,65:119:99:1853,0,1518 0/0:135,0:135:99:0,361,4618 0/1:62,45:107:99:1221,0,1919 0/0:230,0:231:99:0,590,7502 0/0:141,0:141:99:0,358,4575 0/0:124,0:125:99:0,349,4343 0/1:71,57:129:99:1554,0,2040 0/0:128,0:128:99:0,349,4360 1/1:1,122:123:99:3970,286,0 14 91770321 . A C 355.89 . 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C G 41023.51 . AC=68;AF=0.810;AN=84;BaseQRankSum=1.601;DP=1427;Dels=0.00;FS=7.527;HRun=0;HaplotypeScore=0.6383;InbreedingCoeff=-0.2353;MQ=59.38;MQ0=0;MQRankSum=-0.575;QD=28.75;ReadPosRankSum=-0.416 GT:AD:DP:GQ:PL 0/1:11,14:25:99:468,0,304 0/1:9,23:32:99:747,0,234 1/1:0,32:32:96.29:1202,96,0 0/1:28,22:50:99:660,0,814 1/1:0,39:39:99:1485,108,0 1/1:0,30:30:87.29:1182,87,0 1/1:0,43:43:99:1717,126,0 0/1:14,22:36:99:787,0,425 1/1:0,29:29:81.26:1036,81,0 1/1:0,24:24:72.23:920,72,0 0/1:18,12:30:99:341,0,564 1/1:0,37:37:99:1363,108,0 1/1:0,36:36:96.30:1216,96,0 0/1:9,12:21:99:400,0,246 1/1:1,98:100:99:3484,271,0 1/1:0,20:20:60.19:759,60,0 1/1:1,35:36:64.95:1161,65,0 0/1:18,19:37:99:533,0,560 1/1:0,39:40:99:1426,117,0 1/1:0,45:45:99:1687,132,0 0/1:29,15:44:99:384,0,820 0/1:9,8:17:99:229,0,266 0/1:18,23:41:99:844,0,575 1/1:0,36:36:99:1466,108,0 1/1:0,39:39:99:1584,114,0 1/1:0,36:36:99:1366,99,0 1/1:0,21:21:63.16:746,63,0 0/1:12,11:23:99:352,0,391 1/1:0,34:34:99:1242,99,0 1/1:0,33:33:99:1248,99,0 0/1:12,12:24:99:355,0,392 0/1:31,14:45:99:360,0,929 0/1:16,14:30:99:423,0,459 1/1:0,27:27:75.24:964,75,0 0/1:17,16:33:99:489,0,465 1/1:1,31:32:54.72:1112,55,0 1/1:0,34:35:84.27:1099,84,0 0/1:17,7:24:99:192,0,540 1/1:0,19:19:54.15:652,54,0 1/1:0,35:35:99:1261,102,0 1/1:0,26:26:75.22:919,75,0 1/1:0,31:31:93.27:1161,93,0 14 92251587 . A G 31640.91 . AC=10;AF=0.119;AN=84;BaseQRankSum=43.292;DP=8240;DS;Dels=0.00;FS=2.908;HRun=0;HaplotypeScore=2.4705;InbreedingCoeff=-0.1351;MQ=59.63;MQ0=0;MQRankSum=-2.439;QD=15.28;ReadPosRankSum=0.614 GT:AD:DP:GQ:PL 0/1:91,76:167:99:2296,0,2554 0/0:199,0:199:99:0,530,6372 0/0:167,0:167:99:0,442,5406 0/1:122,128:250:99:4078,0,3558 0/0:250,0:250:99:0,716,8594 0/0:250,0:250:99:0,707,8767 0/0:250,0:250:99:0,728,8802 0/0:249,1:250:99:0,683,8550 0/0:182,0:182:99:0,499,5918 0/0:175,0:175:99:0,475,5650 0/0:167,0:167:99:0,472,5594 0/0:149,0:149:99:0,415,4932 0/0:176,0:176:99:0,484,5780 0/0:147,0:147:99:0,409,4892 0/0:250,0:250:99:0,713,8307 0/0:115,1:116:99:0,292,3839 0/0:172,1:173:99:0,431,5576 0/1:73,86:159:99:2653,0,2094 0/1:123,125:248:99:3853,0,3384 0/1:125,125:250:99:3765,0,3394 0/0:250,0:250:99:0,680,8181 0/1:94,88:182:99:2641,0,2500 0/1:129,120:249:99:4056,0,3692 0/0:250,0:250:99:0,722,8736 0/0:250,0:250:99:0,719,8650 0/0:249,1:250:99:0,662,8362 0/0:113,0:113:99:0,301,3674 0/0:173,0:173:99:0,469,5681 0/0:157,0:157:99:0,436,5199 0/0:165,0:166:99:0,445,5369 0/0:163,0:163:99:0,454,5471 0/0:249,0:250:99:0,692,8337 0/0:211,0:211:99:0,551,6687 0/0:165,0:166:99:0,454,5506 0/0:152,0:152:99:0,436,5206 0/0:176,0:176:99:0,472,5772 0/1:136,113:250:99:3326,0,3860 0/0:199,1:200:99:0,509,6457 0/1:87,69:156:99:2079,0,2443 0/0:185,0:185:99:0,505,6037 0/1:66,93:159:99:2894,0,1726 0/0:156,0:156:99:0,424,5098 14 92253952 . T G 886.79 . 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T G 129891.73 . 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C T 2571.29 . AC=5;AF=0.060;AN=84;BaseQRankSum=4.543;DP=1979;Dels=0.00;FS=16.519;HRun=0;HaplotypeScore=1.2301;InbreedingCoeff=-0.0633;MQ=57.82;MQ0=4;MQRankSum=2.085;QD=11.79;ReadPosRankSum=1.093 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,105,1189 0/1:24,15:39:99:388,0,653 0/1:28,17:45:99:469,0,709 0/0:75,0:75:99:0,199,2441 0/0:71,1:72:99:0,158,2165 0/0:43,0:43:99:0,114,1369 0/0:41,0:41:99:0,102,1239 0/0:41,0:41:99:0,102,1219 0/1:24,21:46:99:578,0,595 0/1:21,22:43:99:575,0,567 0/0:42,0:42:99:0,117,1307 0/0:49,0:49:99:0,132,1483 0/0:38,0:38:99:0,102,1177 0/1:23,22:45:99:659,0,612 0/0:125,0:125:99:0,334,3776 0/0:26,0:26:72.19:0,72,813 0/0:36,0:36:99:0,102,1163 0/0:36,0:36:99:0,105,1138 0/0:47,0:47:99:0,111,1294 0/0:69,0:69:99:0,186,2126 0/0:54,0:54:99:0,132,1491 0/0:49,0:49:99:0,123,1428 0/0:66,0:66:99:0,169,2104 0/0:50,0:50:99:0,126,1546 0/0:52,0:52:99:0,138,1673 0/0:31,0:31:84.25:0,84,1024 0/0:35,0:35:96.25:0,96,1083 0/0:38,0:38:99:0,102,1137 0/0:31,0:31:90.21:0,90,992 0/0:30,0:30:87.20:0,87,962 0/0:32,0:32:84.22:0,84,966 0/0:66,0:66:99:0,171,1997 0/0:45,0:45:99:0,117,1379 0/0:39,0:39:99:0,99,1122 0/0:46,0:46:99:0,117,1382 0/0:46,0:46:99:0,126,1461 0/0:47,0:47:99:0,117,1327 0/0:47,0:47:99:0,129,1415 0/0:49,0:49:99:0,141,1571 0/0:48,0:48:99:0,123,1381 0/0:35,0:36:96.20:0,96,1043 0/0:43,0:43:99:0,114,1301 14 92549586 . G A 41807.97 . 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T G 18870.26 . AC=31;AF=0.369;AN=84;BaseQRankSum=-4.901;DP=1863;Dels=0.00;FS=3.462;HRun=0;HaplotypeScore=1.5410;InbreedingCoeff=0.0286;MQ=57.93;MQ0=0;MQRankSum=-2.746;QD=16.01;ReadPosRankSum=-2.334 GT:AD:DP:GQ:PL 0/1:11,7:18:99:163,0,314 0/0:25,0:25:75.22:0,75,907 0/0:32,0:32:93.27:0,93,1131 0/0:111,0:111:99:0,310,3700 0/0:94,0:95:99:0,271,3212 0/1:37,38:75:99:1056,0,996 0/0:47,0:47:99:0,129,1598 0/1:41,33:74:99:911,0,1167 0/0:37,0:37:99:0,99,1190 0/0:19,0:19:51.15:0,51,612 0/0:26,0:26:69.21:0,69,849 0/0:33,0:33:96.28:0,96,1133 0/0:28,0:28:78.22:0,78,930 0/0:26,0:26:72.20:0,72,883 0/1:44,39:83:99:900,0,1101 0/1:22,19:41:99:517,0,629 0/1:15,15:30:99:353,0,431 0/1:16,12:28:99:263,0,453 0/1:36,19:55:99:423,0,1040 0/1:27,36:63:99:877,0,728 0/1:32,24:56:99:567,0,922 1/1:0,23:23:69.18:763,69,0 0/1:77,60:137:99:1744,0,2225 1/1:1,61:62:99:2012,138,0 0/1:37,40:77:99:1136,0,1043 1/1:0,67:67:99:2190,183,0 0/1:9,9:18:99:242,0,245 0/0:23,0:23:66.20:0,66,797 1/1:0,19:19:45.12:516,45,0 0/1:19,14:33:99:355,0,498 0/0:26,0:27:72.22:0,72,893 0/0:78,0:78:99:0,214,2565 1/1:0,44:44:99:1331,120,0 0/1:9,11:20:99:272,0,270 0/1:16,16:32:99:447,0,453 0/1:13,12:25:99:273,0,358 0/1:28,27:55:99:745,0,740 0/0:27,0:27:75.20:0,75,894 1/1:0,21:21:51.13:606,51,0 0/0:34,0:34:96.29:0,96,1172 0/0:16,0:16:42.13:0,42,508 0/1:14,9:23:99:209,0,406 14 92600421 . G A 1878.56 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.461;DP=6443;DS;Dels=0.00;FS=14.031;HRun=0;HaplotypeScore=2.9158;InbreedingCoeff=-0.0120;MQ=59.61;MQ0=0;MQRankSum=-2.131;QD=13.81;ReadPosRankSum=-3.054 GT:AD:DP:GQ:PL 0/0:143,0:143:99:0,391,4638 0/0:159,0:159:99:0,451,5340 0/0:106,0:106:99:0,289,3432 0/0:247,0:247:99:0,677,8722 0/0:248,1:250:99:0,683,9222 0/0:249,0:249:99:0,680,8866 0/0:203,0:203:99:0,569,7437 0/0:227,0:227:99:0,641,8308 0/0:134,0:134:99:0,367,4372 0/0:106,0:106:99:0,301,3545 0/0:121,0:121:99:0,349,4093 0/0:119,0:119:99:0,337,3950 0/0:93,0:93:99:0,271,3164 0/0:102,0:102:99:0,271,3237 0/0:245,0:245:99:0,683,8131 0/0:105,0:105:99:0,289,3394 0/0:152,0:152:99:0,415,4923 0/0:137,0:137:99:0,379,4503 0/0:176,0:176:99:0,484,5688 0/0:165,0:165:99:0,430,5232 0/0:180,0:181:99:0,499,5885 0/0:101,0:101:99:0,280,3336 0/0:250,0:250:99:0,683,8921 0/0:204,0:204:99:0,566,7333 0/0:238,0:239:99:0,665,8758 0/0:196,0:196:99:0,542,6976 0/0:85,0:85:99:0,244,2904 0/0:131,0:131:99:0,385,4474 0/0:111,0:111:99:0,298,3567 0/0:131,0:131:99:0,367,4351 0/0:108,0:108:99:0,304,3593 0/0:158,0:158:99:0,418,5030 0/0:115,0:116:99:0,307,3642 0/0:113,0:113:99:0,328,3766 0/0:122,0:123:99:0,346,4110 0/0:129,0:129:99:0,346,4168 0/0:166,0:167:99:0,439,5247 0/0:143,0:143:99:0,400,4765 0/0:124,0:124:99:0,343,4091 0/0:136,0:137:99:0,364,4359 0/0:119,0:121:99:0,337,4000 0/1:66,70:136:99:1925,0,1802 14 92792255 . G A 38776.85 . AC=84;AF=1.000;AN=84;DP=1167;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2740;InbreedingCoeff=-0.0002;MQ=59.30;MQ0=0;QD=33.23 GT:AD:DP:GQ:PL 1/1:0,21:21:54.16:673,54,0 1/1:0,19:19:54.16:652,54,0 1/1:0,26:26:72.22:885,72,0 1/1:0,32:32:69.22:913,69,0 1/1:0,18:18:51.16:630,51,0 1/1:0,27:27:72.23:932,72,0 1/1:0,18:18:42.14:554,42,0 1/1:0,20:20:54.17:676,54,0 1/1:0,28:28:84.25:1001,84,0 1/1:0,28:28:78.23:945,78,0 1/1:0,20:20:57.17:692,57,0 1/1:0,34:34:93.28:1140,93,0 1/1:0,21:21:60.18:722,60,0 1/1:0,32:32:93.28:1131,93,0 1/1:0,87:87:99:2858,235,0 1/1:0,27:27:72.22:862,72,0 1/1:0,25:25:63.19:791,63,0 1/1:0,30:30:78.23:964,78,0 1/1:0,37:37:96.29:1179,96,0 1/1:0,38:38:99:1243,102,0 1/1:0,27:27:75.24:936,75,0 1/1:0,28:28:72.22:888,72,0 1/1:0,26:26:69.22:880,69,0 1/1:0,9:9:18.06:244,18,0 1/1:0,18:18:45.14:583,45,0 1/1:0,12:12:30.10:386,30,0 1/1:0,25:25:72.22:878,72,0 1/1:0,29:29:84.23:997,84,0 1/1:0,30:30:81.24:989,81,0 1/1:0,32:32:90.27:1098,90,0 1/1:0,27:27:75.22:919,75,0 1/1:0,40:40:99:1266,99,0 1/1:0,43:43:99:1297,102,0 1/1:0,26:26:72.22:884,72,0 1/1:0,23:23:66.20:795,66,0 1/1:0,23:23:60.19:762,60,0 1/1:0,30:30:87.26:1050,87,0 1/1:0,26:26:69.21:849,69,0 1/1:0,25:25:75.22:885,75,0 1/1:0,30:30:87.27:1064,87,0 1/1:0,20:20:54.16:659,54,0 1/1:0,30:30:84.26:1023,84,0 14 92908459 . T TG 26.01 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.982;DP=2369;FS=390.247;HRun=2;HaplotypeScore=152.4077;InbreedingCoeff=-0.0257;MQ=59.00;MQ0=0;MQRankSum=0.093;QD=0.16;ReadPosRankSum=-10.430 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,101,1134 0/0:46,0:46:91.45:0,91,1094 0/0:34,0:34:61.20:0,61,707 0/0:131,0:131:99:0,148,2884 0/1:100,0:100:18.93:19,0,1855 0/0:85,0:85:99:0,149,1919 0/0:65,0:63:75.09:0,75,1474 0/0:75,0:73:99:0,120,1669 0/0:37,0:37:64.25:0,64,822 0/0:46,0:46:88.60:0,89,988 0/0:31,0:31:34.29:0,34,649 0/0:49,0:49:99:0,106,1179 0/0:42,0:42:51.34:0,51,839 0/0:53,0:53:99:0,120,1463 0/0:142,0:142:99:0,230,3500 0/0:30,0:30:8.93:0,9,594 0/0:45,0:45:88.50:0,88,1064 0/0:41,0:41:96.91:0,97,1072 0/0:62,1:63:26.49:0,26,1338 0/0:81,0:81:99:0,179,2234 0/0:86,0:86:87.96:0,88,2013 0/0:53,0:53:99:0,117,1307 0/0:108,1:109:99:0,210,2556 0/0:60,0:60:99:0,116,1363 0/0:81,0:80:99:0,144,1907 0/0:76,0:74:99:0,109,1510 0/0:27,0:27:57.27:0,57,667 0/0:33,0:33:52.86:0,53,794 0/0:31,0:31:54.08:0,54,788 0/0:36,0:36:43.39:0,43,743 0/0:38,1:39:71.97:0,72,851 0/0:81,0:81:99:0,182,2133 0/0:49,1:49:78.62:0,79,1138 0/0:37,0:37:92.98:0,93,1111 0/0:34,0:34:37.78:0,38,777 0/0:45,0:45:87.61:0,88,1027 0/1:62,0:62:76.64:77,0,1182 0/0:39,0:39:37.28:0,37,897 0/0:27,1:28:58.88:0,59,762 0/0:38,0:38:53.60:0,54,902 0/0:41,0:41:85.61:0,86,1054 0/0:40,1:41:48.68:0,49,823 14 92908461 . GAGCCACCTTCAT G 380.13 . AC=10;AF=0.119;AN=84;BaseQRankSum=3.469;DP=2232;FS=1994.968;HRun=0;HaplotypeScore=478.1505;InbreedingCoeff=-0.1753;MQ=59.23;MQ0=0;MQRankSum=1.667;QD=0.69;ReadPosRankSum=-20.232 GT:AD:DP:GQ:PL 0/1:47,0:47:13.69:14,0,5519 0/0:43,0:43:48.35:0,48,5138 0/1:26,0:26:37.72:38,0,3467 0/1:128,0:128:99:154,0,12511 0/1:94,0:94:99:114,0,9816 0/0:77,0:76:56.53:0,57,8953 0/1:65,0:63:7.63:8,0,7466 0/0:68,0:66:55.57:0,56,6909 0/0:33,0:33:9.79:0,10,3704 0/0:45,0:45:31.26:0,31,5153 0/0:29,0:29:27.23:0,27,2861 0/0:46,0:46:2.84:0,3,5193 0/0:38,0:38:1.07:6,0,4305 0/0:50,0:50:82.44:0,82,6908 0/0:132,0:132:1.23:5,0,16436 0/1:31,0:31:27.15:27,0,3733 0/0:41,0:41:71.14:0,71,5315 0/0:39,0:39:17.28:0,17,4849 0/0:46,13:59:22.63:0,23,7354 0/0:77,0:77:99:0,170,11206 0/0:83,0:83:6.84:0,7,11452 0/0:50,0:50:7.24:0,7,6273 0/0:74,31:105:73.33:0,73,11977 0/0:55,0:55:68.42:0,68,6405 0/0:77,0:76:59.73:0,60,8943 0/0:70,0:68:21.74:0,22,7699 0/0:26,0:26:21.12:0,21,3472 0/1:32,0:32:12.86:13,0,4108 0/0:29,0:29:24.13:0,24,3801 0/0:32,0:32:4.12:0,4,4086 0/0:35,0:35:54.27:0,54,4129 0/0:76,0:76:99:0,101,9136 0/0:36,12:47:27.38:0,27,4730 0/0:37,0:37:47.33:0,47,5333 0/1:31,0:31:48.90:49,0,3609 0/0:42,0:42:43.10:0,43,4195 0/1:60,0:60:84.51:85,0,6990 0/1:32,3:35:10.46:10,0,4689 0/0:29,0:29:51.73:0,52,3846 0/0:34,0:34:5.44:0,5,4157 0/0:38,0:38:79.21:0,79,5169 0/0:40,0:40:37.63:0,38,3834 14 92908462 . A G 110.82 . AC=6;AF=0.071;AN=84;BaseQRankSum=-22.698;DP=2232;Dels=0.03;FS=1428.702;HRun=2;HaplotypeScore=16.3188;InbreedingCoeff=-0.0974;MQ=59.23;MQ0=0;MQRankSum=2.065;QD=0.32;ReadPosRankSum=-20.086 GT:AD:DP:GQ:PL 0/0:32,15:47:7.88:0,8,1049 0/0:30,13:43:52.51:0,53,970 0/1:20,6:26:22.06:22,0,617 0/1:76,51:128:67.30:67,0,2256 0/1:56,38:94:52.52:53,0,1805 0/0:51,25:77:99:0,103,1810 0/0:44,21:65:14.06:0,14,1424 0/0:44,24:68:42.71:0,43,1430 0/1:23,10:33:32.88:33,0,633 0/0:32,13:45:68.07:0,68,1022 0/0:18,11:29:20.54:0,21,553 0/0:32,14:46:33.25:0,33,999 0/0:28,10:38:34.20:0,34,817 0/0:41,9:50:91.71:0,92,1355 0/0:97,35:132:62.76:0,63,3140 0/1:24,7:31:19.47:19,0,705 0/0:32,9:41:64.74:0,65,1111 0/0:30,9:39:39.98:0,40,1039 0/0:44,2:46:99:0,120,1489 0/0:66,11:77:99:0,184,2281 0/0:67,16:83:79.77:0,80,2176 0/0:38,12:50:99:0,105,1221 0/0:69,4:74:99:0,173,2500 0/0:41,14:55:80.66:0,81,1302 0/0:51,25:77:97.71:0,98,1803 0/0:42,27:70:72.77:0,73,1460 0/0:19,7:26:31.36:0,31,615 0/0:25,7:32:2.21:2,0,735 0/0:23,6:29:42.18:0,42,731 0/0:24,8:32:14.93:0,15,724 0/0:27,8:35:47.39:0,47,887 0/0:54,22:76:99:0,152,1819 0/0:33,3:36:87.27:0,87,1070 0/0:32,5:37:58.72:0,59,1040 0/1:21,10:31:19.47:19,0,667 0/0:28,14:42:47.65:0,48,892 0/0:42,18:60:2.48:1,0,1129 0/0:26,6:32:26.96:0,27,879 0/0:21,8:29:29.22:0,29,725 0/0:25,9:34:21.23:0,21,843 0/0:29,9:38:61.63:0,62,1041 0/0:24,14:40:10.03:0,10,716 14 92909073 . T C 64945.88 . AC=64;AF=0.762;AN=84;BaseQRankSum=8.653;DP=2578;Dels=0.00;FS=4.160;HRun=0;HaplotypeScore=1.8813;InbreedingCoeff=-0.0500;MQ=59.03;MQ0=1;MQRankSum=0.479;QD=26.16;ReadPosRankSum=0.655 GT:AD:DP:GQ:PL 0/1:18,16:34:99:417,0,528 0/0:48,0:48:99:0,132,1587 0/0:47,0:47:99:0,120,1457 1/1:0,121:121:99:4224,328,0 0/1:61,47:108:99:1288,0,1713 1/1:0,89:89:99:2919,223,0 1/1:0,68:68:99:2418,184,0 0/1:53,39:92:99:1078,0,1563 0/1:34,19:53:99:448,0,974 0/1:22,28:50:99:772,0,620 0/1:24,17:41:99:395,0,685 1/1:0,44:44:99:1469,123,0 0/1:14,16:30:99:409,0,389 1/1:0,52:52:99:1690,141,0 1/1:0,154:157:99:4948,409,0 0/1:18,19:37:99:495,0,508 1/1:0,43:43:99:1413,120,0 0/1:19,25:44:99:760,0,509 1/1:0,56:56:99:1793,147,0 1/1:0,82:83:99:2656,220,0 1/1:0,48:48:99:1578,135,0 1/1:0,52:52:99:1632,132,0 1/1:0,134:134:99:4743,361,0 1/1:0,69:69:99:2446,190,0 1/1:0,80:80:99:2845,217,0 1/1:0,77:77:99:2571,196,0 1/1:0,31:31:87.25:1038,87,0 1/1:0,43:43:99:1488,126,0 1/1:0,41:41:99:1317,111,0 0/1:20,20:40:99:541,0,440 0/1:32,22:55:99:608,0,909 1/1:0,64:64:99:2132,178,0 1/1:0,65:65:99:2017,165,0 1/1:0,49:49:99:1641,138,0 0/1:27,23:50:99:624,0,761 1/1:0,64:64:99:2132,181,0 0/1:37,28:65:99:719,0,1014 0/1:29,22:51:99:627,0,741 1/1:0,48:48:99:1674,144,0 0/1:22,26:48:99:689,0,628 1/1:1,41:42:85.08:1334,85,0 0/1:28,35:63:99:959,0,790 14 92920371 . C T 28306.80 . AC=43;AF=0.512;AN=84;BaseQRankSum=-25.782;DP=2058;Dels=0.00;FS=28.521;HRun=0;HaplotypeScore=1.2600;InbreedingCoeff=-0.0959;MQ=59.25;MQ0=0;MQRankSum=0.018;QD=18.97;ReadPosRankSum=0.098 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,156,1966 0/1:25,21:46:99:596,0,760 0/1:28,16:45:99:420,0,863 0/0:69,0:69:99:0,184,2485 0/1:42,20:62:99:519,0,1444 1/1:0,57:57:99:1994,162,0 0/1:14,23:37:99:725,0,387 1/1:0,35:35:99:1195,99,0 1/1:0,47:47:99:1538,129,0 0/1:24,17:41:99:452,0,745 1/1:0,34:34:99:1150,99,0 0/1:25,23:48:99:648,0,807 0/1:23,11:34:99:286,0,732 1/1:0,53:53:99:1795,156,0 0/0:151,0:151:99:0,397,5098 0/1:18,23:41:99:640,0,541 0/0:38,0:38:99:0,105,1353 0/1:24,14:38:99:359,0,753 0/1:34,40:74:99:1054,0,1025 0/0:63,0:63:99:0,175,2208 0/1:37,36:73:99:1058,0,1037 0/1:28,22:50:99:613,0,801 0/0:60,0:60:99:0,157,2165 0/1:16,19:35:99:541,0,463 1/1:0,48:48:99:1528,126,0 0/0:41,0:41:99:0,105,1427 0/1:14,16:30:99:448,0,416 0/0:49,0:49:99:0,135,1705 1/1:0,46:46:99:1516,129,0 0/1:26,27:53:99:755,0,785 0/1:19,21:40:99:573,0,571 0/1:36,29:65:99:778,0,1060 0/1:19,9:28:99:231,0,566 0/1:21,15:36:99:420,0,623 1/1:0,39:39:99:1241,105,0 0/0:39,0:39:99:0,117,1473 1/1:0,58:58:99:1820,153,0 0/1:20,16:36:99:409,0,611 0/1:22,20:42:99:564,0,681 1/1:0,39:39:99:1351,117,0 0/1:19,24:43:99:717,0,510 0/1:25,14:39:99:371,0,838 14 92958522 . A C 5836.78 . AC=7;AF=0.083;AN=84;BaseQRankSum=9.167;DP=3464;Dels=0.00;FS=2.763;HRun=0;HaplotypeScore=2.3764;InbreedingCoeff=-0.0909;MQ=59.42;MQ0=0;MQRankSum=-0.841;QD=12.61;ReadPosRankSum=-2.160 GT:AD:DP:GQ:PL 0/1:28,29:57:99:813,0,825 0/1:38,24:62:99:708,0,1021 0/1:14,27:41:99:860,0,393 0/0:169,0:169:99:0,439,5487 0/0:155,0:155:99:0,391,4942 0/0:110,1:111:99:0,301,3794 0/0:129,0:129:99:0,337,4269 0/0:115,0:115:99:0,310,3830 0/0:58,0:58:99:0,166,2017 0/1:38,21:59:99:505,0,1088 0/0:64,0:64:99:0,175,2139 0/0:60,0:61:99:0,172,2077 0/0:61,0:61:99:0,175,2136 0/0:62,0:62:99:0,172,2114 0/0:227,2:229:99:0,589,7132 0/0:61,0:61:99:0,166,2012 0/0:59,0:59:99:0,169,2055 0/1:32,28:60:99:743,0,919 0/0:103,1:104:99:0,277,3327 0/0:116,0:116:99:0,316,3873 0/1:44,40:84:99:1151,0,1257 0/0:53,0:53:99:0,147,1734 0/0:156,0:156:99:0,394,4966 0/0:101,0:101:99:0,259,3217 0/0:109,0:109:99:0,277,3525 0/0:126,1:127:99:0,310,3907 0/0:42,0:42:99:0,114,1387 0/0:59,0:59:99:0,168,2037 0/0:61,0:61:99:0,165,2018 0/0:58,0:58:99:0,159,1925 0/0:47,0:47:99:0,132,1624 0/1:59,41:100:99:1056,0,1697 0/0:70,0:70:99:0,190,2283 0/0:58,0:58:99:0,159,1926 0/0:69,0:69:99:0,184,2272 0/0:62,0:62:99:0,181,2173 0/0:99,0:99:99:0,259,3126 0/0:73,0:73:99:0,199,2387 0/0:51,1:52:99:0,147,1773 0/0:61,0:61:99:0,175,2096 0/0:36,0:36:99:0,102,1241 0/0:54,0:54:99:0,144,1809 14 92958569 . C T 4152.30 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.272;DP=4172;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.4331;InbreedingCoeff=-0.0244;MQ=59.52;MQ0=0;MQRankSum=0.078;QD=14.57;ReadPosRankSum=1.062 GT:AD:DP:GQ:PL 0/0:75,0:75:99:0,214,2683 0/0:75,0:75:99:0,190,2419 0/0:57,0:57:99:0,156,1984 0/0:193,0:193:99:0,503,6798 0/0:164,0:164:99:0,430,5884 0/1:68,80:148:99:2241,0,1829 0/0:151,0:151:99:0,370,5050 0/1:67,70:137:99:1911,0,2008 0/0:84,0:84:99:0,223,2864 0/0:74,0:74:99:0,199,2529 0/0:63,0:63:99:0,169,2144 0/0:66,0:66:99:0,172,2167 0/0:72,0:72:99:0,196,2525 0/0:86,0:86:99:0,235,3027 0/0:237,0:237:99:0,587,7530 0/0:79,0:79:99:0,211,2670 0/0:91,0:91:99:0,241,3091 0/0:75,0:76:99:0,205,2622 0/0:129,0:129:99:0,328,4210 0/0:151,0:151:99:0,376,4891 0/0:117,0:117:99:0,304,3884 0/0:71,0:72:99:0,178,2308 0/0:177,0:177:99:0,457,6294 0/0:116,0:116:99:0,313,4283 0/0:122,0:122:99:0,313,4266 0/0:115,0:115:99:0,304,4169 0/0:56,0:56:99:0,159,2025 0/0:82,0:83:99:0,223,2805 0/0:66,0:66:99:0,172,2210 0/0:72,0:72:99:0,196,2505 0/0:60,0:60:99:0,165,2075 0/0:123,0:123:99:0,307,4020 0/0:81,0:81:99:0,223,2850 0/0:70,0:70:99:0,193,2452 0/0:70,0:70:99:0,193,2442 0/0:88,0:88:99:0,244,3080 0/0:119,0:119:99:0,307,3849 0/0:88,0:88:99:0,235,2971 0/0:63,0:63:99:0,168,2094 0/0:81,0:81:99:0,217,2731 0/0:51,0:51:99:0,135,1734 0/0:74,0:74:99:0,199,2526 14 93275841 . A G 4179.43 . AC=6;AF=0.071;AN=84;BaseQRankSum=3.679;DP=2373;Dels=0.00;FS=1.011;HRun=1;HaplotypeScore=0.5876;InbreedingCoeff=-0.0769;MQ=59.22;MQ0=1;MQRankSum=0.293;QD=13.27;ReadPosRankSum=1.059 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,135,1689 0/0:58,0:58:99:0,166,2082 0/0:42,0:42:99:0,120,1509 0/0:66,0:66:99:0,184,2365 0/0:64,0:64:99:0,172,2253 0/0:52,0:52:99:0,150,1993 0/0:55,0:55:99:0,160,2052 0/0:66,0:66:99:0,193,2528 0/0:52,0:52:99:0,147,1854 0/0:39,0:39:99:0,114,1429 0/0:38,0:38:99:0,111,1390 0/0:41,0:41:99:0,111,1418 0/0:54,0:54:99:0,141,1824 0/0:45,0:45:99:0,132,1651 0/0:147,0:147:99:0,403,5111 0/0:36,0:36:99:0,105,1303 0/0:50,0:50:99:0,138,1745 0/1:32,22:54:99:683,0,1010 0/1:50,39:89:99:1064,0,1531 0/0:104,0:104:99:0,289,3692 0/0:103,0:103:99:0,283,3578 0/0:55,0:55:99:0,156,1948 0/0:53,0:53:99:0,153,1979 0/1:30,11:41:99:345,0,914 0/0:59,0:59:99:0,172,2212 0/1:20,16:36:99:512,0,673 0/0:36,0:36:99:0,102,1293 0/0:50,0:51:99:0,138,1748 0/0:38,0:39:99:0,105,1340 0/0:53,0:53:99:0,153,1916 0/0:42,0:42:99:0,114,1434 0/0:64,0:64:99:0,190,2397 0/0:56,0:56:99:0,153,1929 0/1:19,23:42:99:685,0,591 0/1:23,30:53:99:890,0,637 0/0:52,0:52:99:0,150,1904 0/0:77,0:77:99:0,223,2775 0/0:44,0:44:99:0,120,1494 0/0:58,0:58:99:0,172,2112 0/0:58,0:58:99:0,172,2149 0/0:46,0:46:99:0,129,1582 0/0:57,0:57:99:0,169,2106 14 93276654 . T C 45251.87 . AC=57;AF=0.679;AN=84;BaseQRankSum=21.277;DP=2023;Dels=0.00;FS=0.348;HRun=0;HaplotypeScore=0.3847;InbreedingCoeff=0.3996;MQ=59.40;MQ0=0;MQRankSum=0.623;QD=28.84;ReadPosRankSum=-1.764 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,135,1715 0/1:22,17:39:99:529,0,688 0/1:16,24:40:99:764,0,467 0/1:31,38:69:99:1200,0,933 0/0:52,2:54:67.49:0,67,1776 1/1:0,58:58:99:2278,169,0 1/1:0,52:53:99:1907,141,0 1/1:0,31:31:90.30:1220,90,0 1/1:0,55:55:99:1981,156,0 0/1:22,17:39:99:497,0,631 1/1:0,40:40:99:1531,120,0 1/1:0,42:43:99:1565,123,0 1/1:0,36:36:96.31:1241,96,0 1/1:0,52:52:99:1863,147,0 0/0:155,0:155:99:0,421,5185 0/0:38,0:38:99:0,105,1304 0/0:43,0:43:99:0,123,1525 1/1:0,39:39:99:1389,111,0 0/1:34,28:64:99:838,0,1051 0/1:31,39:70:99:1116,0,928 0/1:31,27:58:99:764,0,843 1/1:0,42:42:99:1588,126,0 1/1:0,68:68:99:2545,190,0 1/1:0,33:33:99:1330,99,0 1/1:0,38:38:99:1401,105,0 1/1:0,45:45:99:1773,132,0 1/1:0,32:32:93.29:1168,93,0 1/1:0,47:47:99:1687,132,0 1/1:0,27:27:72.22:903,72,0 0/0:38,1:39:76.56:0,77,1327 0/0:41,0:41:99:0,123,1484 0/1:35,17:52:99:373,0,1106 0/1:27,23:50:99:693,0,771 1/1:0,45:45:99:1644,132,0 1/1:0,33:33:96.31:1219,96,0 1/1:0,42:42:99:1502,120,0 1/1:0,56:56:99:1972,156,0 1/1:0,54:54:99:1897,150,0 1/1:0,36:36:99:1323,105,0 0/0:31,1:32:84.26:0,84,1045 0/1:13,21:34:99:601,0,388 0/1:20,29:49:99:948,0,586 14 93418335 . T TGGTGG 253.48 . AC=11;AF=0.134;AN=82;BaseQRankSum=6.049;DP=425;FS=372.472;HRun=0;HaplotypeScore=56.1276;InbreedingCoeff=-0.1264;MQ=58.34;MQ0=0;MQRankSum=1.921;QD=2.53;ReadPosRankSum=-8.541 GT:AD:DP:GQ:PL 0/0:6,0:6:18.06:0,18,402 0/0:12,0:12:19.05:0,19,480 0/0:10,0:10:18.06:0,18,364 0/0:15,0:15:14.10:0,14,512 0/1:10,0:11:6.60:7,0,501 0/0:3,0:3:9.03:0,9,167 0/0:5,0:5:9.03:0,9,166 0/1:5,0:6:15.88:16,0,189 0/1:14,0:14:80.74:81,0,439 0/0:9,0:9:21.07:0,21,431 0/0:12,0:12:27.09:0,27,602 0/0:11,0:11:24.08:0,24,514 0/0:8,0:8:15.05:0,15,325 0/1:6,0:6:20.76:21,0,187 0/0:27,0:27:2.02:2,0,1195 0/1:10,0:10:15.79:16,0,253 0/1:16,0:16:60.50:61,0,625 0/1:6,0:6:19.76:20,0,175 0/1:10,0:11:99:108,0,180 0/0:11,0:13:17.15:0,17,393 0/0:5,0:5:9.03:0,9,191 0/0:9,0:9:15.05:0,15,326 0/0:18,1:20:22.17:0,22,1042 ./. 0/0:5,0:4:9.94:0,10,264 0/0:10,0:10:21.07:0,21,461 0/0:10,0:10:27.09:0,27,590 0/0:10,0:10:21.07:0,21,434 0/0:9,0:9:2.56:1,0,250 0/0:12,0:12:27.09:0,27,590 0/1:9,0:8:8.88:9,0,307 0/0:12,0:12:17.11:0,17,592 0/0:22,0:22:15.40:0,15,914 0/0:8,0:8:12.04:0,12,268 0/0:9,0:9:21.07:0,21,435 0/0:6,0:6:15.05:0,15,335 0/1:3,1:5:38.77:39,0,108 0/0:5,0:5:0.74:5,2,0 0/0:19,0:19:39.12:0,39,853 0/0:14,0:14:0.15:0,0,508 0/1:6,0:6:10.90:11,0,253 0/0:9,0:9:21.07:0,21,431 14 93418337 . T G 10.50 . AC=5;AF=0.061;AN=82;BaseQRankSum=-7.197;DP=402;Dels=0.00;FS=207.883;HRun=1;HaplotypeScore=0.2283;InbreedingCoeff=-0.1165;MQ=58.45;MQ0=0;MQRankSum=1.683;QD=0.23;ReadPosRankSum=-6.975 GT:AD:DP:GQ:PL 0/0:6,0:6:18.06:0,18,225 0/0:8,3:11:24.06:0,24,276 0/0:6,4:10:18.06:0,18,220 0/0:8,5:13:24.08:0,24,307 0/0:8,1:9:24.08:0,24,307 0/0:3,0:3:9.03:0,9,108 0/0:3,2:5:9.03:0,9,117 0/0:3,1:4:9.03:0,9,115 0/1:8,6:14:29.74:30,0,204 0/0:8,1:10:21.07:0,21,259 0/0:9,3:12:27.09:0,27,337 0/0:8,3:11:24.08:0,24,296 0/0:4,4:8:12.04:0,12,143 0/1:3,3:6:22.32:22,0,101 0/0:20,6:26:51.16:0,51,622 0/1:5,5:10:17.20:17,0,159 0/0:10,6:16:1.48:4,0,279 0/0:4,3:7:9.03:0,9,107 0/0:5,3:8:0.45:10,0,134 0/0:6,4:11:18.05:0,18,216 0/0:4,1:5:12.04:0,12,147 0/0:4,4:8:12.04:0,12,146 0/0:16,1:17:48.15:0,48,608 ./. 0/0:4,1:5:12.04:0,12,160 0/0:8,2:10:24.08:0,24,308 0/0:9,1:10:27.08:0,27,332 0/0:7,3:10:21.06:0,21,244 0/0:5,3:8:15.05:0,15,183 0/0:9,3:12:27.08:0,27,325 0/1:5,4:9:13.50:13,0,164 0/0:10,2:12:30.07:0,30,344 0/0:14,6:20:39.59:0,40,468 0/0:4,3:7:12.04:0,12,146 0/0:7,2:9:21.07:0,21,259 0/0:6,0:6:18.06:0,18,225 0/0:3,0:3:9.03:0,9,106 0/0:2,3:5:3.01:0,3,33 0/0:13,4:17:39.12:0,39,483 0/0:8,5:13:1.33:4,0,259 0/1:5,1:6:12.55:13,0,152 0/0:9,1:10:24.05:0,24,282 14 93673655 . G A 353.56 . AC=6;AF=0.077;AN=78;BaseQRankSum=2.422;DP=176;Dels=0.00;FS=4.094;HRun=0;HaplotypeScore=0.0891;InbreedingCoeff=0.0571;MQ=59.00;MQ0=0;MQRankSum=-0.674;QD=13.60;ReadPosRankSum=2.951 GT:AD:DP:GQ:PL 0/1:4,1:5:25.76:26,0,102 0/0:3,0:3:6.01:0,6,63 ./. 0/0:11,0:11:27.08:0,27,337 0/1:2,6:8:45.27:169,0,45 0/0:9,0:9:27.06:0,27,305 0/0:3,0:3:9.03:0,9,110 0/0:4,0:4:12.04:0,12,144 0/0:4,0:4:12.04:0,12,144 0/0:4,0:4:9.03:0,9,111 0/0:5,0:5:15.04:0,15,170 0/0:5,0:5:12.03:0,12,131 0/0:1,0:1:3:0,3,26 0/0:1,0:1:3.01:0,3,38 0/0:14,0:14:36.09:0,36,386 0/0:8,0:8:21.05:0,21,235 ./. 0/0:4,0:4:9.03:0,9,110 0/0:5,0:5:12.03:0,12,136 0/0:4,0:4:12.02:0,12,134 0/0:6,0:6:12.03:0,12,143 0/0:7,0:7:15.04:0,15,186 0/0:6,0:6:18.03:0,18,195 1/1:1,3:4:9.03:103,9,0 0/1:3,2:5:60.55:61,0,79 0/0:5,0:5:9.01:0,9,112 0/0:4,0:4:12.03:0,12,135 0/0:5,0:5:15.04:0,15,162 ./. 0/0:1,0:1:3.01:0,3,32 0/0:3,0:3:9.03:0,9,109 0/0:6,0:6:15.04:0,15,171 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:6.02:0,6,64 0/0:3,0:3:9.03:0,9,104 0/0:4,0:4:9.03:0,9,115 0/0:5,0:5:15.04:0,15,167 0/0:2,0:2:3.01:0,3,32 0/1:1,3:4:20.47:95,0,20 0/0:2,0:2:6.01:0,6,63 0/0:2,0:2:6:0,6,54 0/0:1,0:1:3.01:0,3,32 14 93814384 . T G 43.41 . AC=2;AF=0.024;AN=84;BaseQRankSum=-24.417;DP=2980;Dels=0.00;FS=119.967;HRun=1;HaplotypeScore=1.8342;InbreedingCoeff=-0.0244;MQ=59.15;MQ0=0;MQRankSum=0.869;QD=0.33;ReadPosRankSum=-13.819 GT:AD:DP:GQ:PL 0/0:31,11:42:68.56:0,69,986 0/0:36,8:44:46.01:0,46,1026 0/0:35,11:46:75.66:0,76,1143 0/0:122,32:154:99:0,268,3688 0/0:106,26:132:99:0,285,3294 0/0:97,18:115:99:0,189,2762 0/0:94,20:114:99:0,226,2669 0/0:99,18:117:99:0,172,2672 0/0:38,11:49:58.91:0,59,1139 0/0:41,10:51:99:0,114,1267 0/0:31,8:39:75.15:0,75,860 0/0:41,9:50:78.96:0,79,1208 0/0:43,5:49:99:0,111,1349 0/0:43,5:48:99:0,117,1389 0/0:130,52:182:99:0,193,3649 0/0:46,7:54:99:0,117,1364 0/0:36,9:45:65.81:0,66,1077 0/0:49,7:56:99:0,126,1461 0/1:36,24:60:61.78:62,0,879 0/0:71,11:82:99:0,187,2188 0/0:55,12:67:95.93:0,96,1582 0/0:36,12:48:69.37:0,69,1051 0/0:100,31:131:99:0,212,2925 0/0:99,23:122:99:0,211,2907 0/0:95,25:120:99:0,220,2846 0/0:97,22:119:99:0,241,2871 0/0:40,3:43:93.21:0,93,1093 0/0:42,12:54:86.61:0,87,1246 0/0:43,8:51:75.13:0,75,1200 0/0:41,6:47:99:0,117,1289 0/0:34,8:42:87.24:0,87,1033 0/0:60,6:66:99:0,150,1768 0/0:32,15:47:61.35:0,61,916 0/0:39,9:48:86.53:0,87,1166 0/0:38,6:44:99:0,102,1135 0/0:45,14:59:94.64:0,95,1345 0/1:50,22:72:44.02:44,0,1330 0/0:44,5:50:99:0,117,1317 0/0:45,11:56:61.96:0,62,1141 0/0:56,14:70:58.15:0,58,1648 0/0:36,9:45:65.83:0,66,1106 0/0:42,7:50:99:0,114,1316 14 93814427 . A G 575.97 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.379;DP=3299;Dels=0.00;FS=2.886;HRun=0;HaplotypeScore=1.3374;InbreedingCoeff=-0.0120;MQ=59.33;MQ0=0;MQRankSum=2.334;QD=9.60;ReadPosRankSum=0.349 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,159,1922 0/0:72,0:72:99:0,202,2394 0/0:50,0:50:99:0,132,1614 0/0:149,1:150:99:0,385,4757 0/0:143,0:143:99:0,373,4638 0/0:110,0:110:99:0,298,3772 0/0:119,0:119:99:0,286,3678 0/0:120,0:120:99:0,322,3980 0/0:65,0:65:99:0,172,2086 0/0:56,0:56:99:0,150,1817 0/0:59,0:59:99:0,159,1944 0/0:53,0:53:99:0,147,1789 0/0:47,0:47:99:0,129,1574 0/1:36,24:60:99:622,0,1037 0/0:205,0:205:99:0,536,6524 0/0:49,0:49:99:0,141,1674 0/0:57,0:57:99:0,159,1933 0/0:65,0:65:99:0,178,2144 0/0:74,0:75:99:0,211,2566 0/0:89,0:89:99:0,223,2751 0/0:79,0:79:99:0,214,2630 0/0:62,0:62:99:0,156,1947 0/0:150,0:150:99:0,397,4879 0/0:118,0:118:99:0,304,3752 0/0:117,0:117:99:0,307,3791 0/0:117,0:117:99:0,301,3728 0/0:44,0:44:99:0,129,1511 0/0:49,0:49:99:0,144,1716 0/0:61,0:61:99:0,166,2005 0/0:58,0:58:99:0,162,1942 0/0:57,1:58:99:0,147,1824 0/0:85,0:85:99:0,223,2702 0/0:47,0:48:99:0,123,1490 0/0:54,0:54:99:0,159,1917 0/0:60,0:60:99:0,166,2009 0/0:65,0:65:99:0,184,2221 0/0:75,0:75:99:0,199,2425 0/0:47,0:47:99:0,129,1555 0/0:59,0:59:99:0,165,1997 0/0:66,0:66:99:0,181,2218 0/0:64,0:64:99:0,178,2158 0/0:63,0:63:99:0,172,2103 14 94103602 . G A 41553.31 . AC=43;AF=0.512;AN=84;BaseQRankSum=12.641;DP=2939;Dels=0.00;FS=8.357;HRun=0;HaplotypeScore=1.7641;InbreedingCoeff=-0.1912;MQ=59.35;MQ0=0;MQRankSum=-0.196;QD=17.94;ReadPosRankSum=-0.218 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2090,175,0 0/1:27,38:65:99:1092,0,723 0/1:31,16:47:99:419,0,799 1/1:0,84:84:99:2549,208,0 1/1:2,79:81:99:2513,163,0 0/1:51,26:77:99:667,0,1592 1/1:0,55:55:99:1702,135,0 0/1:49,36:85:99:946,0,1300 0/1:33,31:64:99:799,0,927 1/1:0,46:46:99:1569,129,0 0/0:68,0:68:99:0,184,2171 0/1:32,35:67:99:941,0,824 0/1:25,32:57:99:924,0,633 0/1:32,30:62:99:836,0,828 0/1:78,99:177:99:2734,0,1895 1/1:0,39:39:99:1364,114,0 0/1:33,39:72:99:1040,0,902 0/1:38,19:57:99:512,0,1005 0/1:40,36:77:99:1069,0,1027 0/0:93,0:93:99:0,235,2751 0/0:107,0:107:99:0,274,3128 0/1:27,46:73:99:1229,0,689 0/1:68,43:111:99:1101,0,1842 0/1:31,34:65:99:942,0,836 0/0:100,0:100:99:0,262,3296 0/1:35,33:68:99:872,0,965 0/0:36,0:36:93.26:0,93,1108 0/0:54,1:55:99:0,116,1639 0/1:21,32:53:99:819,0,516 0/1:39,25:64:99:654,0,1014 0/1:29,37:66:99:1046,0,720 0/0:99,0:99:99:0,247,2940 0/1:40,36:76:99:948,0,1058 0/1:24,29:53:99:810,0,597 0/0:63,2:65:97.51:0,98,1842 1/1:0,56:56:99:1899,156,0 0/1:37,48:85:99:1406,0,835 1/1:0,47:47:99:1608,132,0 0/1:28,27:55:99:734,0,756 0/1:25,31:56:99:889,0,616 1/1:0,48:48:99:1693,141,0 0/1:26,38:64:99:1138,0,643 14 94156629 . G A 1406.95 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.221;DP=3411;Dels=0.00;FS=1.816;HRun=0;HaplotypeScore=1.1604;InbreedingCoeff=-0.0120;MQ=59.52;MQ0=0;MQRankSum=-0.610;QD=13.93;ReadPosRankSum=0.915 GT:AD:DP:GQ:PL 0/0:61,0:61:99:0,156,1965 0/0:47,0:47:99:0,126,1622 0/0:52,0:52:99:0,132,1726 0/0:150,1:152:99:0,394,5300 0/1:52,49:101:99:1453,0,1628 0/0:125,0:125:99:0,328,4468 0/0:105,0:105:99:0,265,3604 0/0:111,0:111:99:0,292,3906 0/0:62,0:63:99:0,153,1973 0/0:54,0:54:99:0,138,1751 0/0:58,0:58:99:0,156,1975 0/0:61,0:61:99:0,169,2145 0/0:61,0:61:99:0,163,2103 0/0:47,0:47:99:0,132,1683 0/0:211,0:212:99:0,527,6795 0/0:55,0:55:99:0,144,1871 0/0:56,0:56:99:0,153,1937 0/0:56,0:56:99:0,166,2099 0/0:104,0:105:99:0,274,3484 0/0:108,0:108:99:0,262,3434 0/0:100,0:100:99:0,250,3224 0/0:49,0:49:99:0,138,1726 0/0:200,0:200:99:0,515,7032 0/0:114,0:114:99:0,283,3823 0/0:133,0:133:99:0,346,4657 0/0:118,0:118:99:0,292,3998 0/0:48,0:48:99:0,135,1699 0/0:57,0:57:99:0,156,1941 0/0:51,0:51:99:0,135,1739 0/0:70,0:70:99:0,190,2419 0/0:50,0:50:99:0,132,1667 0/0:103,0:103:99:0,259,3341 0/0:68,0:68:99:0,190,2431 0/0:53,0:53:99:0,150,1889 0/0:64,2:66:99:0,142,2284 0/0:67,0:67:99:0,178,2286 0/0:75,0:75:99:0,193,2447 0/0:50,0:50:99:0,138,1743 0/0:54,0:54:99:0,159,1992 0/0:79,0:79:99:0,202,2613 0/0:49,0:50:99:0,126,1621 0/0:65,0:66:99:0,175,2214 14 94391699 . G A 20012.74 . 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G A 99599.81 . AC=47;AF=0.560;AN=84;BaseQRankSum=-18.249;DP=5463;DS;Dels=0.00;FS=15.407;HRun=0;HaplotypeScore=2.8109;InbreedingCoeff=-0.1110;MQ=59.36;MQ0=0;MQRankSum=-0.402;QD=20.94;ReadPosRankSum=0.491 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3532,304,0 0/1:31,52:83:99:1588,0,788 0/0:76,0:76:99:0,214,2546 0/1:107,102:209:99:2892,0,3290 0/1:102,95:197:99:2750,0,3358 0/1:80,77:157:99:2308,0,2629 1/1:0,121:121:99:4193,352,0 0/1:72,79:151:99:2277,0,2289 0/0:116,1:117:99:0,301,4007 0/0:71,0:71:99:0,208,2451 0/1:57,56:113:99:1623,0,1605 0/1:50,54:104:99:1559,0,1436 0/1:36,33:69:99:971,0,946 0/1:60,58:118:99:1661,0,1731 1/1:0,221:221:99:7157,611,0 0/1:65,49:114:99:1406,0,1832 1/1:0,116:116:99:4044,343,0 0/1:53,49:102:99:1334,0,1511 0/1:99,92:193:99:2438,0,2804 1/1:0,210:211:99:7160,605,0 0/1:98,93:194:99:2594,0,2677 1/1:0,114:114:99:3921,340,0 0/1:115,105:220:99:3009,0,3769 1/1:0,142:142:99:4843,400,0 0/1:88,72:160:99:2061,0,2761 0/1:72,60:132:99:1685,0,2293 1/1:0,88:88:99:3022,259,0 1/1:1,113:114:99:3747,316,0 0/1:41,39:80:99:1136,0,1113 0/0:99,2:101:99:0,221,3266 0/0:97,0:97:99:0,277,3223 0/1:92,106:200:99:2939,0,2603 0/0:142,1:143:99:0,367,4661 0/1:46,49:95:99:1364,0,1354 0/1:54,62:116:99:1774,0,1544 0/0:101,0:101:99:0,289,3446 1/1:1,194:197:99:6360,533,0 1/1:0,104:104:99:3578,307,0 0/1:55,60:115:99:1708,0,1482 0/1:44,60:104:99:1750,0,1240 0/1:41,50:91:99:1456,0,1079 1/1:0,107:107:99:3758,319,0 14 94417531 . T C 4114.98 . AC=5;AF=0.060;AN=84;BaseQRankSum=-6.795;DP=2098;Dels=0.00;FS=13.954;HRun=0;HaplotypeScore=6.0039;InbreedingCoeff=-0.0633;MQ=58.76;MQ0=0;MQRankSum=-0.429;QD=12.17;ReadPosRankSum=2.390 GT:AD:DP:GQ:PL 0/0:31,0:31:93.28:0,93,1115 0/0:38,0:39:99:0,105,1279 0/0:33,0:33:93.28:0,93,1115 0/0:76,0:76:99:0,220,2599 0/0:78,0:78:99:0,226,2718 0/1:35,33:68:99:813,0,1033 0/1:23,32:55:99:916,0,663 0/0:57,0:57:99:0,162,1933 0/0:39,0:39:99:0,111,1310 0/0:34,0:34:93.24:0,93,1060 0/0:45,0:45:99:0,123,1468 0/0:48,0:48:99:0,132,1586 0/0:29,0:29:84.24:0,84,983 0/0:37,0:37:99:0,105,1247 0/0:115,0:115:99:0,301,3585 0/0:60,0:61:99:0,168,1999 0/0:40,0:40:99:0,114,1364 0/0:49,0:49:99:0,141,1694 0/1:29,27:57:99:586,0,860 0/1:40,37:77:99:936,0,1098 0/0:79,0:79:99:0,220,2618 0/0:46,0:46:99:0,132,1556 0/1:50,31:81:99:864,0,1393 0/0:33,0:33:87.24:0,87,1027 0/0:57,0:57:99:0,150,1787 0/0:41,0:41:99:0,114,1342 0/0:39,0:39:99:0,105,1254 0/0:38,0:38:99:0,114,1352 0/0:33,0:33:93.27:0,93,1117 0/0:53,0:53:99:0,135,1596 0/0:44,0:44:99:0,123,1455 0/0:68,0:68:99:0,190,2281 0/0:56,0:56:99:0,156,1820 0/0:36,0:36:99:0,105,1282 0/0:39,0:39:99:0,111,1368 0/0:32,0:32:93.27:0,93,1117 0/0:61,0:61:99:0,153,1860 0/0:43,0:43:99:0,126,1481 0/0:38,0:38:99:0,105,1248 0/0:37,0:37:93.29:0,93,1131 0/0:30,0:30:87.23:0,87,1001 0/0:46,0:46:99:0,132,1576 14 94417541 . A G 56033.56 . AC=70;AF=0.833;AN=84;BaseQRankSum=1.903;DP=2115;Dels=0.00;FS=11.174;HRun=0;HaplotypeScore=5.4230;InbreedingCoeff=-0.0286;MQ=58.83;MQ0=0;MQRankSum=-0.345;QD=27.19;ReadPosRankSum=0.969 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1287,111,0 1/1:1,41:42:79.04:1235,79,0 1/1:0,32:32:90.23:1018,90,0 1/1:0,80:80:99:2597,223,0 1/1:0,81:81:99:2836,235,0 1/1:0,67:67:99:2294,193,0 1/1:0,63:63:99:2144,175,0 1/1:0,61:61:99:2144,175,0 1/1:0,39:40:99:1308,114,0 0/1:23,13:36:99:257,0,555 1/1:0,36:37:96.20:1076,96,0 0/1:23,25:48:99:713,0,650 1/1:0,27:27:75.20:874,75,0 0/1:21,17:38:99:456,0,602 1/1:0,110:112:99:3362,295,0 0/1:30,26:56:99:669,0,731 1/1:0,35:35:99:1167,102,0 0/1:21,27:48:99:724,0,563 0/1:27,33:60:99:879,0,775 1/1:0,80:80:99:2542,220,0 1/1:0,69:70:99:2146,192,0 1/1:0,45:46:99:1417,123,0 1/1:0,81:81:99:2823,235,0 1/1:0,44:44:99:1529,126,0 1/1:0,51:52:99:1646,135,0 1/1:0,36:36:99:1281,105,0 1/1:0,36:36:99:1152,99,0 1/1:0,41:41:99:1407,123,0 0/1:14,15:29:99:459,0,340 0/1:28,23:51:99:540,0,813 0/1:23,19:42:99:451,0,640 1/1:0,69:70:99:2137,181,0 0/0:54,0:54:99:0,150,1697 1/1:0,37:37:99:1258,105,0 0/1:23,14:37:99:384,0,657 1/1:0,37:37:99:1223,108,0 1/1:0,55:56:99:1649,150,0 1/1:0,42:42:99:1356,117,0 1/1:0,44:44:99:1366,120,0 0/1:24,25:49:99:554,0,663 0/1:19,15:34:99:375,0,508 1/1:1,44:45:81.20:1300,81,0 14 94417586 . G A 34595.66 . AC=47;AF=0.560;AN=84;BaseQRankSum=-6.762;DP=2017;Dels=0.00;FS=4.037;HRun=0;HaplotypeScore=1.7724;InbreedingCoeff=-0.1110;MQ=58.68;MQ0=0;MQRankSum=1.250;QD=19.77;ReadPosRankSum=0.574 GT:AD:DP:GQ:PL 1/1:0,32:32:87.26:1050,87,0 0/1:19,19:38:99:510,0,517 0/0:39,0:39:99:0,105,1245 0/1:57,43:100:99:1118,0,1676 0/1:33,35:68:99:1024,0,930 0/1:33,35:68:99:955,0,889 1/1:0,47:47:99:1479,120,0 0/1:27,34:61:99:975,0,714 0/0:29,0:29:84.19:0,84,941 0/0:29,0:29:81.25:0,81,991 0/1:13,6:19:99:156,0,408 0/1:25,17:42:99:429,0,694 0/1:15,13:28:99:341,0,451 0/1:15,17:32:99:520,0,424 1/1:0,116:117:99:3701,313,0 0/1:16,24:40:99:719,0,413 1/1:0,42:43:99:1404,117,0 0/1:17,28:46:99:749,0,481 0/1:28,27:55:99:706,0,717 1/1:2,61:63:99:2015,168,0 0/1:34,36:74:99:1007,0,991 1/1:0,45:45:99:1414,117,0 0/1:55,41:96:99:1114,0,1611 1/1:0,50:50:99:1732,141,0 0/1:40,20:60:99:545,0,1187 0/1:26,15:41:99:377,0,716 1/1:0,36:37:90.26:1078,90,0 1/1:2,39:41:48.38:1232,48,0 0/1:15,9:24:99:249,0,449 0/0:37,0:37:99:0,102,1237 0/0:32,0:32:93.21:0,93,1072 0/1:28,38:67:99:1029,0,718 0/0:62,1:63:99:0,138,1975 0/1:22,14:36:99:353,0,610 0/1:14,16:30:99:436,0,412 0/0:37,1:38:75.19:0,75,1241 1/1:0,62:64:99:2064,172,0 1/1:0,39:39:99:1340,111,0 0/1:19,20:40:99:556,0,547 0/1:21,18:39:99:490,0,577 0/1:13,20:33:99:565,0,329 1/1:0,35:35:99:1165,99,0 14 94464489 . G A 2672.17 . AC=6;AF=0.071;AN=84;BaseQRankSum=-8.435;DP=1854;Dels=0.00;FS=9.701;HRun=0;HaplotypeScore=1.5484;InbreedingCoeff=-0.0769;MQ=59.05;MQ0=2;MQRankSum=5.950;QD=9.75;ReadPosRankSum=-2.181 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,111,1420 0/0:34,0:34:87.28:0,87,1116 0/0:36,0:36:87.28:0,87,1134 0/0:107,0:107:99:0,262,3486 0/1:41,27:68:99:696,0,1259 0/1:31,20:51:99:496,0,930 0/0:42,0:42:99:0,114,1506 0/1:41,22:63:99:468,0,1243 0/0:42,0:42:99:0,105,1349 0/0:31,0:31:75.24:0,75,970 0/0:25,0:25:72.22:0,72,898 0/0:30,0:30:81.25:0,81,1040 0/0:26,0:26:69.22:0,69,878 0/0:33,0:33:81.26:0,81,1069 0/0:111,0:111:99:0,274,3440 0/0:30,0:30:78.22:0,78,960 0/0:28,0:28:75.21:0,75,944 0/0:23,0:23:69.21:0,69,859 0/0:47,0:47:99:0,114,1453 0/0:61,0:61:99:0,175,2177 0/0:50,0:50:99:0,126,1586 0/0:41,0:41:99:0,108,1360 0/0:91,0:91:99:0,232,3075 0/0:44,0:44:99:0,105,1369 0/0:62,0:62:99:0,157,2103 0/0:59,0:59:99:0,150,2031 0/1:23,16:39:99:352,0,607 0/1:13,12:25:99:326,0,354 0/1:12,16:28:99:439,0,338 0/0:31,0:31:81.25:0,81,1025 0/0:23,0:23:63.20:0,63,794 0/0:82,0:82:99:0,205,2636 0/0:35,0:35:87.27:0,87,1081 0/0:26,0:26:78.24:0,78,962 0/0:40,0:40:99:0,105,1327 0/0:44,0:44:99:0,114,1451 0/0:49,0:49:99:0,111,1422 0/0:32,0:32:69.21:0,69,878 0/0:29,0:29:75.24:0,75,965 0/0:33,0:33:93.28:0,93,1146 0/0:28,0:28:69.20:0,69,871 0/0:33,0:33:84.26:0,84,1069 14 94467549 . C T 1179.51 . AC=4;AF=0.048;AN=84;BaseQRankSum=0.328;DP=951;Dels=0.00;FS=1.448;HRun=0;HaplotypeScore=0.9038;InbreedingCoeff=-0.0504;MQ=59.08;MQ0=0;MQRankSum=1.316;QD=13.25;ReadPosRankSum=-0.477 GT:AD:DP:GQ:PL 0/0:17,0:17:42.12:0,42,513 0/0:20,0:20:48.14:0,48,568 0/0:10,0:10:21.03:0,21,231 0/0:52,0:52:99:0,147,1839 0/1:18,14:32:99:387,0,532 0/1:13,11:24:99:288,0,429 0/0:25,0:25:72.22:0,72,925 0/1:8,15:23:99:478,0,242 0/0:19,0:19:54.14:0,54,612 0/0:13,0:13:36.08:0,36,399 0/0:11,0:11:27.06:0,27,305 0/0:13,0:14:27.05:0,27,309 0/0:18,0:19:48.12:0,48,563 0/0:14,0:14:39.10:0,39,450 0/0:66,0:67:99:0,159,1872 0/0:15,0:15:39.11:0,39,462 0/0:21,0:21:60.16:0,60,686 0/0:19,0:19:54.15:0,54,627 0/0:29,0:29:78.21:0,78,902 0/0:35,0:35:96.25:0,96,1117 0/0:29,0:30:75.20:0,75,862 0/0:25,0:25:66.14:0,66,731 0/0:42,0:42:99:0,120,1539 0/0:23,0:23:66.16:0,66,808 0/0:24,0:24:69.20:0,69,855 0/0:19,0:19:57.18:0,57,736 0/0:17,0:17:39.08:0,39,450 0/1:6,4:10:99:114,0,182 0/0:24,0:24:60.14:0,60,677 0/0:17,0:17:42.12:0,42,504 0/0:15,0:15:39.12:0,39,479 0/0:40,0:40:93.24:0,93,1110 0/0:25,0:25:54.16:0,54,672 0/0:6,0:6:18.05:0,18,211 0/0:20,0:20:48.15:0,48,580 0/0:17,0:17:45.12:0,45,522 0/0:32,0:32:81.22:0,81,931 0/0:21,0:21:60.18:0,60,709 0/0:16,0:16:42.13:0,42,515 0/0:16,0:16:45.12:0,45,514 0/0:16,0:16:45.13:0,45,532 0/0:16,0:17:45.12:0,45,530 14 94521529 . A C 1652.75 . AC=33;AF=0.393;AN=84;BaseQRankSum=-17.332;DP=1590;Dels=0.00;FS=342.209;HRun=2;HaplotypeScore=1.5672;InbreedingCoeff=-0.6209;MQ=57.85;MQ0=0;MQRankSum=-0.502;QD=1.33;ReadPosRankSum=-5.120 GT:AD:DP:GQ:PL 0/1:7,16:23:92.26:92,0,217 0/1:13,15:28:9.20:9,0,368 0/1:12,18:31:99:106,0,306 0/1:29,46:75:24.99:25,0,894 0/1:22,36:58:98.89:99,0,679 0/1:18,26:44:54.90:55,0,509 0/0:22,38:60:19.80:0,20,667 0/1:22,32:54:17:17,0,609 0/1:12,14:26:25.87:26,0,346 0/1:11,18:30:99:103,0,331 0/0:12,13:25:33.10:0,33,389 0/1:15,14:29:15.95:16,0,376 0/1:13,15:28:99:99,0,281 0/1:10,16:26:30.81:31,0,282 0/1:41,42:84:57.23:57,0,1221 0/1:16,15:31:99:135,0,422 0/1:15,20:35:99:125,0,399 0/1:12,21:33:99:169,0,350 0/0:27,22:49:41.77:0,42,803 0/1:29,24:53:30.71:31,0,731 0/1:16,27:43:61.02:61,0,457 0/0:9,18:27:4.39:0,4,286 0/1:23,54:77:88.32:88,0,579 0/0:17,29:46:16.76:0,17,473 0/1:18,32:50:32.68:33,0,543 0/0:15,22:37:22.42:0,22,462 0/1:11,8:19:16.21:16,0,341 0/1:13,27:40:51.76:52,0,280 0/1:13,16:29:99:116,0,348 0/1:12,21:33:59.73:60,0,359 0/1:14,22:36:14.97:15,0,436 0/0:28,24:52:20.04:0,20,807 0/1:11,21:32:20.16:20,0,303 0/1:7,17:24:3.63:4,0,196 0/0:12,18:30:36.02:0,36,400 0/1:19,15:34:3.06:3,0,534 0/1:12,17:29:46.23:46,0,352 0/1:10,17:27:4.28:4,0,275 0/1:8,22:30:32.15:32,0,215 0/1:10,11:21:21.20:21,0,278 0/0:12,7:19:33.10:0,33,391 0/1:15,18:33:60.39:60,0,420 14 94568167 . T TGGGGGGG 1054.92 . AC=25;AF=0.298;AN=84;BaseQRankSum=11.069;DP=1750;FS=1220.951;HRun=1;HaplotypeScore=283.7453;InbreedingCoeff=-0.4241;MQ=58.99;MQ0=0;MQRankSum=5.560;QD=0.96;ReadPosRankSum=-15.887 GT:AD:DP:GQ:PL 0/1:30,0:30:58.81:59,0,915 0/1:31,0:31:27.59:28,0,1219 0/1:30,0:30:10.01:10,0,1020 0/1:54,5:79:15.41:15,0,2537 0/1:51,8:77:99:121,0,2605 0/0:44,1:53:40.09:0,40,2035 0/0:33,0:40:29.20:0,29,1620 0/1:46,1:50:23.33:23,0,1834 0/1:37,0:37:17.74:18,0,1624 0/0:44,0:44:9.87:0,10,1262 0/0:23,0:23:22.14:0,22,835 0/1:27,0:27:73.61:74,0,819 0/0:21,0:21:7.03:0,7,873 0/1:36,0:36:18.83:19,0,1504 0/1:103,1:112:99:108,0,3556 0/0:34,0:34:21.01:0,21,1549 0/1:29,0:29:15.73:16,0,925 0/1:22,0:22:23.75:24,0,850 0/1:39,7:59:79.16:79,0,2141 0/0:63,1:69:94.95:0,95,3240 0/1:45,3:64:99:193,0,2656 0/0:37,0:37:13.42:0,13,1426 0/1:62,8:85:8.17:8,0,2818 0/0:22,2:25:26.27:0,26,1193 0/0:45,0:49:32.49:0,32,1826 0/0:34,1:38:37.10:0,37,1403 0/0:22,0:22:28.18:0,28,836 0/1:39,0:39:68.68:69,0,1165 0/1:26,0:26:4.89:5,0,875 0/0:28,0:28:30.03:0,30,1175 0/1:30,0:30:24.79:25,0,964 0/0:51,1:55:89.24:0,89,2591 0/0:46,0:46:34.33:0,34,1873 0/1:32,0:32:42.22:42,0,1079 0/1:34,0:34:41.93:42,0,1051 0/0:27,0:27:1.33:0,1,1184 0/1:28,7:47:99:138,0,1308 0/0:34,0:34:13.18:0,13,1195 0/1:46,0:46:31.02:31,0,1459 0/1:33,0:33:45.59:46,0,1274 0/1:12,0:12:5.75:6,0,336 0/1:35,0:35:39.54:40,0,1363 14 94568169 . T G 141.78 . AC=8;AF=0.095;AN=84;BaseQRankSum=-21.513;DP=1565;Dels=0.01;FS=215.435;HRun=4;HaplotypeScore=1.8116;InbreedingCoeff=-0.1300;MQ=58.32;MQ0=0;MQRankSum=-1.087;QD=0.61;ReadPosRankSum=-9.497 GT:AD:DP:GQ:PL 0/0:18,12:30:1:6,0,455 0/1:20,11:31:33.07:33,0,552 0/0:21,10:31:32.47:0,32,625 0/0:47,10:58:99:0,111,1349 0/0:54,2:57:99:0,129,1523 0/0:36,8:44:99:0,99,1178 0/0:30,5:35:78.20:0,78,935 0/0:33,4:38:81.17:0,81,945 0/0:29,8:37:23.85:0,24,821 0/0:25,15:41:69.17:0,69,765 0/0:16,7:23:48.13:0,48,547 0/1:16,8:25:73.75:74,0,449 0/0:15,6:21:23.42:0,23,461 0/1:26,10:36:25.42:25,0,743 0/0:66,31:98:99:0,124,1978 0/0:23,11:35:41.61:0,42,776 0/1:15,13:28:8.13:8,0,421 0/1:15,6:21:23.92:24,0,400 0/0:39,1:40:99:0,102,1177 0/0:50,12:63:99:0,137,1578 0/0:43,3:46:99:0,117,1389 0/0:23,12:35:21.82:0,22,718 0/0:51,11:62:99:0,135,1630 0/0:19,3:22:51.14:0,51,610 0/0:36,9:45:87.23:0,87,1028 0/0:26,9:35:72.16:0,72,819 0/0:18,4:22:45.10:0,45,504 0/0:23,17:40:7.03:0,7,601 0/0:18,10:28:54.14:0,54,610 0/0:17,10:27:48.09:0,48,533 0/1:21,9:30:11.52:12,0,546 0/0:43,8:52:99:0,111,1296 0/0:35,11:46:49.88:0,50,1021 0/1:18,13:31:35.24:35,0,572 0/1:21,11:32:42.42:42,0,622 0/0:18,9:27:27.50:0,28,578 0/0:27,2:29:42.50:0,43,740 0/0:20,12:32:35.48:0,35,618 0/0:30,14:44:20.49:0,20,854 0/0:22,10:33:11.32:0,11,656 0/0:6,6:12:18.05:0,18,202 0/0:23,12:35:0.99:6,0,668 14 94582130 . T TGGCCATGGC 28820.18 . AC=54;AF=0.643;AN=84;BaseQRankSum=-4.784;DP=548;FS=1.468;HRun=0;HaplotypeScore=106.3686;InbreedingCoeff=-0.1532;MQ=49.18;MQ0=0;MQRankSum=-9.667;QD=58.11;ReadPosRankSum=2.712 GT:AD:DP:GQ:PL 0/1:14,0:14:99:552,0,521 1/1:7,2:9:24.08:952,24,0 1/1:10,1:13:36.12:1336,36,0 0/1:15,3:19:99:573,0,672 1/1:9,4:16:45.15:1679,45,0 0/1:7,1:10:99:250,0,313 0/0:10,0:10:30.10:0,30,648 1/1:11,1:12:30.10:930,30,0 1/1:7,0:7:15.05:538,15,0 0/1:7,1:8:99:364,0,283 0/1:6,0:6:99:266,0,221 0/1:14,0:14:99:614,0,456 0/1:6,0:6:79.89:363,0,80 0/0:15,0:15:45.15:0,45,966 1/1:17,8:32:87.29:3031,87,0 1/1:7,3:10:21.07:816,21,0 0/1:13,3:16:99:820,0,365 0/1:7,1:10:99:567,0,195 0/1:10,1:12:99:238,0,400 0/1:17,1:21:99:861,0,553 0/1:20,1:23:99:567,0,799 0/1:15,0:15:99:289,0,584 0/1:22,1:25:99:472,0,1150 1/1:1,1:3:6.02:183,6,0 1/1:7,3:10:36.11:1465,36,0 1/1:7,0:6:15.05:524,15,0 1/1:8,6:17:42.08:1531,42,0 1/1:5,4:13:36.11:1289,36,0 0/1:10,1:11:99:528,0,302 0/0:16,0:16:48.09:0,48,1011 0/0:11,0:11:27.50:0,27,626 0/1:15,0:15:99:490,0,540 0/1:10,1:11:99:652,0,221 0/1:7,0:7:99:348,0,196 0/1:13,1:17:99:638,0,715 0/1:11,3:16:99:1221,0,288 1/1:3,3:8:15.05:490,15,0 1/1:8,2:13:33.09:1003,33,0 0/1:15,1:19:99:469,0,700 1/1:10,0:10:15.04:408,15,0 0/1:10,1:11:99:796,0,355 1/1:4,1:6:18.06:709,18,0 14 94582132 . GCTGTGC G 470.26 . AC=10;AF=0.119;AN=84;BaseQRankSum=-0.423;DP=508;FS=27.859;HRun=0;HaplotypeScore=85.5997;InbreedingCoeff=-0.0433;MQ=47.69;MQ0=0;MQRankSum=1.861;QD=3.79;ReadPosRankSum=-2.724 GT:AD:DP:GQ:PL 0/1:14,0:14:40.44:40,0,769 0/0:9,0:8:12.02:0,12,258 0/0:12,0:11:6.02:0,6,116 0/0:18,0:18:48.11:0,48,1039 0/1:14,0:14:7.46:7,0,673 0/0:7,0:7:18.06:0,18,413 0/0:11,0:10:33.10:0,33,711 0/1:12,0:12:99:198,0,421 0/1:7,0:7:2.03:58,2,0 0/0:7,0:7:15.05:0,15,454 0/0:6,0:6:12.04:0,12,257 0/0:14,0:14:33.10:0,33,782 0/0:6,0:6:6.02:0,6,178 0/0:15,0:15:45.15:0,45,1054 0/0:24,0:24:30.10:0,30,733 0/0:9,0:9:12.04:0,12,305 0/0:14,0:14:33.03:0,33,851 0/0:8,0:8:12.04:0,12,314 0/0:11,0:11:27.09:0,27,695 0/0:19,0:20:47.91:0,48,1257 0/1:21,0:21:8.57:9,0,1295 0/1:15,0:15:28.73:29,0,1009 0/0:22,0:22:63.13:0,63,1554 0/0:1,0:1:3.01:0,3,76 0/0:11,0:9:15.04:0,15,368 0/1:5,3:7:99:99,0,168 0/0:16,0:16:7.18:0,7,782 0/0:10,0:10:21.07:0,21,591 0/0:10,0:10:18.06:0,18,441 0/0:16,0:16:48.09:0,48,1153 0/0:11,0:11:27.50:0,27,715 0/0:15,0:15:24.08:0,24,693 0/0:13,0:13:27.09:0,27,648 0/1:6,2:8:86.34:86,0,299 0/0:15,0:15:36.12:0,36,1020 0/1:17,0:17:19.20:19,0,791 0/0:8,0:8:21.07:0,21,520 0/0:11,0:11:18.06:0,18,401 0/0:17,0:17:42.12:0,42,1078 0/1:8,0:8:61.81:62,0,244 0/0:12,0:12:27.07:0,27,679 0/0:5,0:5:3.01:0,3,66 14 94582134 . T C 7.40 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.919;DP=392;Dels=0.01;FS=7.374;HRun=1;HaplotypeScore=3.3746;InbreedingCoeff=0.1134;MQ=52.01;MQ0=0;MQRankSum=1.710;QD=0.44;ReadPosRankSum=-2.544 GT:AD:DP:GQ:PL 0/0:10,1:11:1.27:5,0,319 0/0:4,0:4:12.03:0,12,136 0/0:3,0:3:6.02:0,6,69 0/0:17,0:17:36.11:0,36,467 0/0:9,1:10:6.98:0,7,248 0/0:7,0:7:18.06:0,18,220 0/0:11,0:11:30.10:0,30,384 0/1:7,1:9:16.73:17,0,191 0/1:1,2:3:1.76:39,3,0 0/0:5,0:5:15.04:0,15,172 0/0:4,0:4:12.04:0,12,145 0/0:12,0:12:33.09:0,33,380 0/0:3,0:3:6.02:0,6,73 0/0:15,0:15:45.14:0,45,553 0/0:10,0:10:30.09:0,30,340 0/0:4,0:4:9.03:0,9,103 0/0:11,0:11:33.10:0,33,386 0/0:4,0:4:12.03:0,12,139 0/0:9,0:9:27.08:0,27,320 0/0:18,0:18:48.14:0,48,577 0/0:20,1:21:17.83:0,18,593 0/0:15,1:16:11.69:0,12,451 0/0:21,0:21:57.16:0,57,689 0/0:1,0:1:3.01:0,3,33 0/0:5,0:5:15.04:0,15,172 0/0:2,0:2:6.02:0,6,70 0/0:11,1:12:2.67:0,3,339 0/0:8,0:8:24.07:0,24,273 0/0:6,0:6:18.05:0,18,215 0/0:17,0:17:48.14:0,48,581 0/0:10,0:10:30.10:0,30,376 0/0:9,2:11:21.06:0,21,266 0/0:11,0:11:27.08:0,27,316 0/0:6,0:6:15.04:0,15,178 0/0:12,0:12:36.11:0,36,437 0/0:12,1:13:2.14:0,2,386 0/0:7,0:7:21.06:0,21,254 0/0:7,0:7:18.05:0,18,211 0/0:15,0:15:39.12:0,39,463 0/1:3,2:5:25.76:26,0,90 0/0:10,0:10:30.09:0,30,355 0/0:1,0:1:3.01:0,3,33 14 94582136 . T G 143.23 . AC=11;AF=0.131;AN=84;BaseQRankSum=-7.839;DP=371;Dels=0.01;FS=140.945;HRun=1;HaplotypeScore=3.2631;InbreedingCoeff=-0.1912;MQ=52.26;MQ0=0;MQRankSum=1.569;QD=1.10;ReadPosRankSum=-6.217 GT:AD:DP:GQ:PL 0/0:8,1:9:24.07:0,24,279 0/0:5,0:5:15.04:0,15,169 0/0:3,0:3:6.02:0,6,68 0/1:8,9:17:64.57:65,0,190 0/0:9,0:9:27.07:0,27,298 0/1:4,3:7:15.64:16,0,92 0/1:4,7:11:40.08:40,0,125 0/0:5,0:5:15.04:0,15,169 0/0:2,0:2:6.02:0,6,67 0/0:4,1:5:12.04:0,12,147 0/0:1,3:4:3.01:0,3,35 0/1:6,4:10:26.32:26,0,150 0/0:2,1:3:6.02:0,6,72 0/0:8,6:14:18.06:0,18,219 0/0:11,0:11:33.07:0,33,360 0/0:4,0:4:12.03:0,12,129 0/1:8,1:9:10.72:11,0,254 0/1:2,2:4:15.67:16,0,61 0/0:5,3:8:15.05:0,15,185 0/0:14,4:18:39.09:0,39,451 0/1:12,5:17:3.88:4,0,322 0/0:11,3:14:32.59:0,33,355 0/1:12,9:21:18.83:19,0,354 0/0:2,0:2:6.02:0,6,71 0/0:6,0:6:18.05:0,18,205 0/0:2,0:2:6.02:0,6,69 0/0:13,0:13:39.11:0,39,446 0/0:8,0:8:24.07:0,24,271 0/1:4,2:6:18.56:19,0,95 0/1:12,6:18:14.79:15,0,338 0/1:5,5:10:41.86:42,0,165 0/0:5,4:9:14.82:0,15,142 0/0:9,1:11:24.07:0,24,278 0/0:5,0:5:12.03:0,12,138 0/0:7,5:12:21.06:0,21,254 0/0:10,2:12:30.08:0,30,336 0/0:7,0:7:21.06:0,21,246 0/0:7,0:7:18.05:0,18,197 0/0:9,3:12:0.46:0,0,286 0/0:5,0:5:15.04:0,15,167 0/0:8,2:10:1.36:0,1,241 0/0:1,0:1:3.01:0,3,33 14 94696967 . C G 580.82 . AC=14;AF=0.167;AN=84;BaseQRankSum=-13.986;DP=2134;Dels=0.00;FS=206.938;HRun=1;HaplotypeScore=1.0091;InbreedingCoeff=-0.2240;MQ=59.06;MQ0=0;MQRankSum=-2.493;QD=0.82;ReadPosRankSum=-12.056 GT:AD:DP:GQ:PL 0/1:26,14:40:99:146,0,602 0/1:18,9:27:37.52:38,0,462 0/0:28,6:34:35.43:0,35,605 0/0:87,41:128:80.26:0,80,2000 0/0:93,35:128:84.37:0,84,2369 0/0:65,29:94:53.03:0,53,1329 0/1:45,36:81:49.58:50,0,886 0/0:63,24:87:62.54:0,63,1215 0/0:18,19:37:3.83:0,4,349 0/0:20,14:34:29.11:0,29,299 0/1:26,13:39:13.80:14,0,582 0/0:15,6:21:7.55:0,8,374 0/0:17,6:23:11.37:0,11,302 0/0:21,6:27:48.11:0,48,527 0/1:66,40:107:99:116,0,1343 0/1:28,13:41:6.45:6,0,538 0/0:30,10:40:50.47:0,50,766 0/0:26,8:34:63.10:0,63,660 0/1:36,24:60:99:101,0,849 0/0:41,8:49:34.17:0,34,946 0/1:21,13:34:47.35:47,0,566 0/0:22,11:33:51.10:0,51,545 0/0:86,43:129:99:0,102,2027 0/1:57,24:82:15.48:15,0,1234 0/1:57,17:74:8.09:8,0,1252 0/0:52,19:71:93.48:0,93,1343 0/0:19,10:29:20.43:0,20,463 0/1:22,7:29:18.85:19,0,516 0/0:26,10:36:36.35:0,36,564 0/0:24,5:29:9.84:0,10,421 0/0:21,12:33:0.94:6,0,443 0/0:46,12:59:23.83:0,24,871 0/1:21,11:32:99:127,0,349 0/0:25,16:41:0.23:0,0,562 0/0:33,7:40:22.81:0,23,714 0/0:27,14:41:34.62:0,35,674 0/0:37,12:49:22.66:0,23,879 0/1:21,9:31:7.03:7,0,386 0/0:25,12:37:38.49:0,38,680 0/1:17,11:28:28:28,0,358 0/0:22,8:30:42.08:0,42,457 0/0:24,12:36:18.39:0,18,393 14 94772429 . G A 8916.45 . AC=8;AF=0.095;AN=84;BaseQRankSum=9.582;DP=3053;Dels=0.00;FS=1.485;HRun=0;HaplotypeScore=1.5139;InbreedingCoeff=0.1711;MQ=59.34;MQ0=0;MQRankSum=-0.918;QD=14.74;ReadPosRankSum=0.348 GT:AD:DP:GQ:PL 0/0:71,0:71:99:0,171,1988 0/0:45,0:45:99:0,123,1419 0/0:61,0:61:99:0,162,1924 0/1:55,70:125:99:1888,0,1476 0/1:60,46:106:99:1214,0,1737 0/0:112,0:112:99:0,280,3628 0/0:94,0:94:99:0,244,3093 0/1:54,37:91:99:1032,0,1439 0/0:58,0:58:99:0,153,1810 0/0:34,0:34:93.26:0,93,1071 0/1:31,20:51:99:528,0,857 0/0:45,0:45:99:0,123,1442 0/0:40,0:40:99:0,108,1239 0/0:63,0:63:99:0,165,1903 0/0:199,0:200:99:0,481,5733 0/0:54,0:54:99:0,162,1811 0/0:55,0:55:99:0,150,1733 0/0:43,0:43:99:0,120,1364 0/0:94,0:94:99:0,244,2823 0/0:97,0:97:99:0,241,2891 0/0:91,0:91:99:0,235,2785 0/0:59,0:60:99:0,150,1787 0/1:70,61:131:99:1782,0,1960 0/0:94,1:95:99:0,191,2949 0/0:123,0:123:99:0,331,4232 0/0:97,0:97:99:0,238,3059 0/0:44,0:44:99:0,114,1289 0/0:51,0:51:99:0,150,1664 0/0:44,0:44:99:0,123,1387 0/0:52,0:52:99:0,147,1595 0/0:49,0:49:99:0,138,1569 0/0:100,0:101:99:0,250,3010 0/0:69,0:69:99:0,168,1984 0/0:48,0:48:99:0,120,1380 0/0:54,0:54:99:0,144,1659 0/0:67,0:67:99:0,180,2085 0/0:76,0:76:99:0,196,2254 0/0:52,0:52:99:0,141,1597 0/0:48,0:48:99:0,138,1547 0/1:21,34:55:99:1030,0,522 1/1:2,44:46:62.53:1442,63,0 0/0:61,0:61:99:0,165,1897 14 94772504 . G A 15036.60 . AC=17;AF=0.202;AN=84;BaseQRankSum=-2.019;DP=2541;Dels=0.00;FS=0.981;HRun=1;HaplotypeScore=0.9573;InbreedingCoeff=0.0413;MQ=59.37;MQ0=0;MQRankSum=0.510;QD=16.03;ReadPosRankSum=0.736 GT:AD:DP:GQ:PL 0/1:30,26:56:99:706,0,856 0/0:43,0:43:99:0,120,1383 0/0:46,0:46:99:0,129,1539 0/0:94,0:94:99:0,253,3262 0/0:82,0:82:99:0,217,2819 0/1:43,40:83:99:1222,0,1278 1/1:0,57:57:99:2052,163,0 0/0:71,0:71:99:0,208,2707 0/0:52,0:52:99:0,138,1682 0/0:33,0:33:93.27:0,93,1104 0/0:38,0:38:99:0,114,1355 0/1:22,20:42:99:551,0,635 0/0:46,0:46:99:0,132,1531 1/1:0,46:46:99:1558,129,0 0/1:85,91:176:99:2404,0,2224 0/1:26,18:44:99:535,0,785 0/0:50,0:50:99:0,135,1594 0/0:46,0:46:99:0,126,1515 0/0:68,0:69:99:0,175,2121 0/1:45,31:76:99:906,0,1323 0/1:30,32:62:99:910,0,879 0/1:23,26:49:99:726,0,609 0/0:110,1:111:99:0,280,3931 0/0:74,0:74:99:0,193,2511 0/0:85,0:85:99:0,235,3049 0/1:35,37:73:99:1082,0,1037 0/1:17,16:33:99:438,0,454 0/1:27,27:54:99:772,0,723 0/0:38,0:38:99:0,105,1264 0/1:30,21:51:99:599,0,800 0/1:17,19:36:99:577,0,483 0/0:83,0:83:99:0,217,2615 0/0:50,0:50:99:0,138,1666 0/0:43,0:43:99:0,123,1463 0/0:56,0:56:99:0,159,1929 0/0:56,0:56:99:0,159,1916 0/0:79,0:80:99:0,208,2497 0/0:62,0:62:99:0,159,1900 0/0:50,0:51:99:0,150,1787 0/0:54,0:55:99:0,141,1728 0/0:34,1:35:59.30:0,59,1069 0/0:54,0:54:99:0,147,1808 14 94912799 . G A 53952.42 . AC=32;AF=0.381;AN=84;BaseQRankSum=15.714;DP=5609;DS;Dels=0.00;FS=17.815;HRun=0;HaplotypeScore=3.2835;InbreedingCoeff=0.0913;MQ=59.31;MQ0=0;MQRankSum=-0.446;QD=19.17;ReadPosRankSum=-0.327 GT:AD:DP:GQ:PL 0/1:41,53:94:99:1491,0,1082 0/1:53,46:99:99:1368,0,1366 0/0:94,2:97:99:0,226,2996 0/0:250,0:250:99:0,707,8633 0/0:236,0:237:99:0,653,8182 0/0:171,0:171:99:0,484,5966 0/0:171,1:172:99:0,436,5796 0/0:179,0:179:99:0,493,6035 0/1:62,43:105:99:1219,0,1648 0/1:51,61:112:99:1805,0,1315 0/1:49,41:90:99:1208,0,1313 1/1:0,83:83:99:2956,241,0 1/1:0,72:72:99:2439,199,0 1/1:0,108:108:99:3710,304,0 0/0:250,0:250:99:0,671,7548 0/1:53,45:98:99:1312,0,1452 0/0:112,0:112:99:0,307,3481 0/0:111,0:111:99:0,307,3491 0/1:86,100:186:99:2753,0,2279 1/1:0,184:184:99:6265,509,0 0/1:113,104:217:99:2829,0,2898 0/1:75,50:125:99:1333,0,2040 0/0:239,0:239:99:0,671,8306 0/0:157,0:157:99:0,427,5340 0/0:178,1:180:99:0,461,5994 0/0:182,0:182:99:0,503,6230 0/0:97,0:97:99:0,271,3046 0/0:89,0:89:99:0,244,2781 0/1:50,54:104:99:1571,0,1311 0/0:94,1:95:99:0,235,3004 0/1:44,38:82:99:1111,0,1175 0/0:176,0:177:99:0,466,5431 0/1:71,54:125:99:1586,0,1908 1/1:0,90:90:99:3240,265,0 1/1:0,97:97:99:3423,277,0 0/1:65,54:119:99:1504,0,1568 0/1:99,71:170:99:2037,0,2428 0/1:40,50:90:99:1438,0,953 0/1:37,49:86:99:1501,0,949 1/1:0,95:95:99:3260,268,0 0/1:39,35:74:99:1007,0,1020 0/1:56,53:109:99:1586,0,1476 14 94912896 . T G 76221.49 . 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A G 95255.70 . 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A G 2226.40 . 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T C 4766.10 . 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G A 15457.13 . AC=18;AF=0.214;AN=84;BaseQRankSum=5.243;DP=1890;Dels=0.00;FS=18.968;HRun=0;HaplotypeScore=1.7802;InbreedingCoeff=0.0101;MQ=58.71;MQ0=0;MQRankSum=-0.143;QD=18.08;ReadPosRankSum=2.197 GT:AD:DP:GQ:PL 0/1:15,22:37:99:674,0,370 0/1:17,18:35:99:511,0,492 0/1:12,18:30:99:557,0,298 0/1:51,36:87:99:1078,0,1423 1/1:1,68:69:99:2380,196,0 0/1:21,30:51:99:943,0,565 0/1:29,15:44:99:394,0,818 0/0:49,0:49:99:0,132,1627 0/0:42,0:42:99:0,120,1401 0/0:26,0:26:78.22:0,78,917 0/0:31,0:31:87.21:0,87,1002 0/0:28,0:28:84.21:0,84,944 0/0:26,1:27:37.43:0,37,822 0/0:41,0:41:99:0,111,1329 0/1:48,68:117:99:2044,0,1187 0/1:15,14:29:99:422,0,437 0/0:30,0:30:87.25:0,87,1031 0/0:29,0:29:81.20:0,81,939 0/0:54,0:54:99:0,135,1585 0/0:62,0:62:99:0,174,2054 0/1:29,29:58:99:826,0,793 0/1:26,24:50:99:681,0,678 0/0:82,0:82:99:0,232,2865 0/0:39,0:39:99:0,111,1351 0/0:43,0:43:99:0,120,1475 0/0:52,0:52:99:0,141,1790 0/0:36,1:37:99:0,102,1180 0/0:50,0:50:99:0,141,1656 0/0:25,0:25:75.22:0,75,892 0/0:29,0:29:84.24:0,84,994 0/0:27,0:28:72.20:0,72,858 0/1:45,31:76:99:912,0,1268 0/0:53,0:53:99:0,150,1757 0/1:20,17:37:99:499,0,523 0/0:34,0:34:99:0,99,1138 1/1:0,47:47:99:1596,129,0 0/0:49,0:50:99:0,129,1463 0/0:27,0:27:78.20:0,78,911 0/0:33,0:33:93.25:0,93,1057 0/1:10,25:35:99:780,0,216 0/0:34,0:34:96.29:0,96,1147 0/1:16,37:53:99:1159,0,376 14 95906114 . A C 58.27 . 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T G 1359.05 . AC=19;AF=0.226;AN=84;BaseQRankSum=-32.866;DP=5180;DS;Dels=0.00;FS=3200.000;HRun=3;HaplotypeScore=2.7874;InbreedingCoeff=-0.2954;MQ=59.15;MQ0=0;MQRankSum=-0.092;QD=0.70;ReadPosRankSum=-32.865 GT:AD:DP:GQ:PL 0/0:70,15:85:45.50:0,46,2308 0/1:96,28:124:99:188,0,2967 0/1:64,25:89:99:164,0,1925 0/0:148,16:165:99:0,219,5048 0/0:144,21:165:99:0,128,4864 0/0:151,25:177:99:0,127,5193 0/0:119,27:146:41.28:0,41,3955 0/0:127,24:151:0.53:0,1,3968 0/0:94,26:120:30.59:0,31,2876 0/1:61,18:79:99:133,0,1798 0/1:72,20:92:78.71:79,0,2285 0/1:69,23:92:3.26:3,0,2203 0/1:60,21:81:99:111,0,1817 0/1:67,18:85:39.68:40,0,2092 0/0:199,47:247:38.25:0,38,6008 0/1:71,16:87:34.50:34,0,2078 0/0:83,21:104:52.17:0,52,2620 0/1:76,23:100:77.20:77,0,2282 0/1:125,34:160:99:161,0,3573 0/0:132,34:167:73.95:0,74,4082 0/0:143,33:176:99:0,147,4393 0/0:80,15:96:79.39:0,79,2426 0/0:175,33:208:30.44:0,30,5628 0/0:126,39:165:71.59:0,72,4020 0/0:134,38:173:19.08:0,19,4187 0/0:132,25:157:99:0,145,4344 0/0:60,15:75:34.98:0,35,1925 0/0:74,12:86:95.21:0,95,2428 0/1:78,21:99:33.31:33,0,2492 0/1:90,20:110:39.12:39,0,2794 0/1:61,16:77:21.66:22,0,1875 0/0:129,41:170:62.98:0,63,3769 0/0:91,13:104:99:0,144,3003 0/0:76,12:88:39.47:0,39,2449 0/0:88,22:111:50.24:0,50,2789 0/1:85,19:104:46.61:47,0,2640 0/1:136,34:171:58.83:59,0,3910 0/1:74,22:96:61.78:62,0,2334 0/1:90,17:107:46.91:47,0,2787 0/0:83,14:97:99:0,159,2848 0/1:71,22:93:99:136,0,2124 0/1:76,25:101:91.46:91,0,2257 14 96771959 . A G 91761.58 . 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G A 625.10 . 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G A 117536.90 . 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C T 1079.80 . 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A G 4909.69 . 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C G 130838.28 . AC=80;AF=0.952;AN=84;BaseQRankSum=2.063;DP=3849;Dels=0.00;FS=0.880;HRun=0;HaplotypeScore=1.4152;InbreedingCoeff=-0.0500;MQ=58.84;MQ0=0;MQRankSum=-0.349;QD=33.99;ReadPosRankSum=-1.409 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2685,214,0 1/1:0,76:76:99:2612,208,0 1/1:0,47:47:99:1696,135,0 1/1:0,159:159:99:5947,448,0 1/1:0,159:159:99:6038,451,0 1/1:0,161:161:99:6254,466,0 1/1:0,137:138:99:5118,382,0 0/1:60,69:129:99:2245,0,1787 0/1:49,31:80:99:877,0,1454 0/1:32,42:74:99:1310,0,957 1/1:0,73:73:99:2564,205,0 1/1:0,73:73:99:2486,199,0 1/1:0,54:54:99:1979,159,0 1/1:0,59:59:99:2146,175,0 1/1:0,245:245:99:8292,665,0 1/1:0,52:52:99:1713,135,0 0/1:44,34:78:99:975,0,1264 1/1:1,67:68:99:2459,196,0 1/1:0,80:81:99:2870,232,0 1/1:0,86:86:99:2870,232,0 1/1:0,83:83:99:2807,226,0 1/1:0,67:67:99:2456,196,0 1/1:0,166:166:99:6271,470,0 1/1:0,126:126:99:4715,355,0 1/1:0,149:149:99:5580,415,0 1/1:0,119:119:99:4432,337,0 1/1:0,51:51:99:1806,144,0 1/1:0,83:83:99:2979,241,0 1/1:0,71:71:99:2557,202,0 1/1:0,71:71:99:2456,196,0 1/1:0,68:68:99:2429,196,0 1/1:0,94:95:99:3134,247,0 1/1:0,66:66:99:2381,193,0 1/1:0,75:75:99:2747,217,0 1/1:0,58:58:99:2084,166,0 1/1:0,72:72:99:2626,211,0 1/1:0,90:90:99:3073,244,0 1/1:0,69:69:99:2411,193,0 1/1:0,78:79:99:2807,226,0 1/1:0,60:60:99:2209,175,0 1/1:0,64:64:99:2287,184,0 1/1:1,96:97:99:3454,240,0 14 96986425 . A AACCCCC 70.11 . AC=3;AF=0.036;AN=84;BaseQRankSum=4.902;DP=6105;DS;FS=1940.773;HRun=0;HaplotypeScore=908.8669;InbreedingCoeff=-0.0368;MQ=61.33;MQ0=1;MQRankSum=4.487;QD=0.17;ReadPosRankSum=-22.534 GT:AD:DP:GQ:PL 0/0:123,0:123:99:0,111,5318 0/0:122,0:122:36.77:0,37,5140 0/0:115,0:115:99:0,113,4552 0/0:245,0:250:99:0,354,10666 0/0:205,0:210:99:0,181,9338 0/0:219,0:218:99:0,321,8739 0/0:218,0:219:99:0,321,9233 0/0:217,0:214:99:0,281,8255 0/0:124,0:124:68.15:0,68,5335 0/0:86,0:86:21.45:0,21,3800 0/0:111,0:111:99:0,183,4970 0/0:103,0:103:99:0,206,4705 0/0:108,0:108:99:0,181,4964 0/0:117,0:117:99:0,113,5610 0/0:245,0:250:99:0,152,8207 0/1:95,0:95:13.76:14,0,3861 0/0:140,0:139:37.33:0,37,5253 0/0:110,0:110:75.06:0,75,4761 0/1:140,1:152:99:113,0,6291 0/0:150,0:150:99:0,262,6559 0/1:144,0:154:25.29:25,0,6612 0/0:93,0:93:99:0,143,4570 0/0:238,0:241:99:0,280,9826 0/0:199,0:197:99:0,270,8553 0/0:192,0:192:99:0,280,7746 0/0:199,0:197:99:0,264,8233 0/0:84,0:84:75.02:0,75,3444 0/0:124,0:124:32.76:0,33,5206 0/0:102,0:102:99:0,167,4613 0/0:98,0:98:99:0,117,3854 0/0:115,0:115:99:0,191,5509 0/0:183,0:182:99:0,347,8608 0/0:107,0:107:99:0,184,4683 0/0:121,0:121:99:0,155,4774 0/0:117,0:117:99:0,168,5131 0/0:131,0:130:99:0,187,5624 0/0:160,0:170:17.88:0,18,7583 0/0:138,0:138:99:0,233,6391 0/0:125,0:125:99:0,166,5698 0/0:141,0:141:98.32:0,98,5933 0/0:125,0:125:99:0,104,5114 0/0:114,0:114:99:0,178,5873 14 96994294 . T G 47.48 . AC=2;AF=0.024;AN=84;BaseQRankSum=-39.841;DP=6038;DS;Dels=0.00;FS=598.680;HRun=1;HaplotypeScore=2.2501;InbreedingCoeff=-0.0361;MQ=59.44;MQ0=0;MQRankSum=0.369;QD=0.16;ReadPosRankSum=-19.122 GT:AD:DP:GQ:PL 0/0:73,33:106:99:0,167,2241 0/0:63,26:89:99:0,147,1946 0/0:67,25:92:99:0,140,1865 0/0:134,109:243:99:0,205,4033 0/0:147,101:248:99:0,320,4269 0/0:146,99:245:99:0,216,4165 0/0:173,77:250:99:0,350,4749 0/0:174,66:240:99:0,297,4629 0/0:81,33:114:81.79:0,82,2230 0/0:79,23:102:99:0,140,2337 0/0:76,27:103:99:0,170,2275 0/0:75,31:107:99:0,152,2269 0/0:80,26:106:99:0,175,2301 0/0:67,36:103:99:0,114,2105 0/0:150,91:241:99:0,122,4330 0/0:60,21:82:99:0,117,1772 0/0:105,47:152:99:0,224,3071 0/0:77,29:106:99:0,163,2180 0/0:98,62:160:0.23:13,0,2725 0/0:130,31:161:99:0,337,3995 0/1:90,58:148:87.90:88,0,2631 0/0:65,32:97:99:0,100,1880 0/0:131,109:240:99:0,168,3731 0/0:172,68:240:99:0,345,5105 0/0:168,66:234:99:0,310,4426 0/0:174,71:245:99:0,332,4804 0/0:57,18:75:72.75:0,73,1697 0/0:78,24:102:99:0,169,2302 0/0:71,22:94:99:0,132,2040 0/0:78,25:103:99:0,144,2328 0/0:78,34:113:99:0,175,2316 0/0:141,28:169:99:0,339,4283 0/0:87,30:117:99:0,208,2482 0/0:89,38:127:99:0,210,2765 0/0:74,32:106:99:0,166,2212 0/0:90,44:134:99:0,166,2604 0/1:96,60:156:17.21:17,0,2852 0/0:70,44:114:99:0,103,1994 0/0:78,27:105:90.30:0,90,2349 0/0:64,32:96:89.64:0,90,1844 0/0:64,21:86:99:0,150,1947 0/0:59,28:87:99:0,121,1778 14 96997922 . C T 67.93 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.114;DP=615;Dels=0.00;FS=9.407;HRun=0;HaplotypeScore=0.0802;InbreedingCoeff=-0.0133;MQ=59.43;MQ0=0;MQRankSum=0.038;QD=9.70;ReadPosRankSum=-0.445 GT:AD:DP:GQ:PL 0/0:10,0:10:24.06:0,24,267 0/0:18,0:18:51.14:0,51,576 0/0:10,0:10:27.07:0,27,304 0/0:22,0:22:57.18:0,57,707 0/0:16,0:16:48.15:0,48,582 0/0:11,0:11:30.10:0,30,380 0/0:25,0:25:69.20:0,69,838 0/0:14,0:14:42.13:0,42,508 0/0:13,0:13:36.09:0,36,401 0/0:10,0:10:24.06:0,24,264 0/0:12,0:12:36.09:0,36,397 0/0:18,0:18:42.12:0,42,510 0/0:9,0:9:24.06:0,24,274 0/0:22,0:22:66.17:0,66,730 0/0:43,0:43:99:0,114,1295 0/0:9,0:9:24.06:0,24,269 0/0:12,0:12:33.09:0,33,376 0/0:18,0:18:54.14:0,54,588 0/0:15,0:15:45.12:0,45,493 0/0:12,0:12:36.09:0,36,382 0/0:12,0:12:33.08:0,33,372 0/0:4,0:4:12.03:0,12,130 0/0:22,0:22:66.20:0,66,797 0/0:17,0:17:48.15:0,48,597 0/0:14,0:14:39.11:0,39,477 0/0:19,0:19:54.17:0,54,668 0/0:8,0:8:24.06:0,24,260 0/0:7,0:7:21.06:0,21,228 0/0:19,0:19:51.14:0,51,588 0/0:9,0:9:24.07:0,24,279 0/0:7,0:7:21.05:0,21,230 0/0:13,0:13:36.10:0,36,412 0/0:11,0:11:33.09:0,33,374 0/0:13,0:13:39.09:0,39,415 0/1:3,4:7:77.38:114,0,77 0/0:20,0:20:60.16:0,60,667 0/0:15,0:15:39.10:0,39,441 0/0:12,0:12:36.09:0,36,389 0/0:26,0:26:72.20:0,72,824 0/0:13,0:13:39.09:0,39,421 0/0:18,0:18:51.14:0,51,566 0/0:10,0:10:30.08:0,30,342 14 100111565 . G A 76.71 . AC=6;AF=0.125;AN=48;BaseQRankSum=-2.026;DP=45;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0701;InbreedingCoeff=0.0281;MQ=57.06;MQ0=0;MQRankSum=-0.019;QD=8.52;ReadPosRankSum=0.814 GT:AD:DP:GQ:PL 0/0:5,0:5:6.02:0,6,90 ./. 0/0:1,0:1:3.01:0,3,33 0/0:4,0:4:9.02:0,9,104 1/1:0,1:1:3.01:34,3,0 0/0:1,0:1:3.01:0,3,41 0/0:1,0:1:3.01:0,3,42 0/1:1,2:3:30.96:31,0,33 0/0:2,0:2:6.02:0,6,73 ./. ./. 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:3.01:0,3,38 ./. 0/0:1,0:1:3.01:0,3,30 ./. ./. ./. ./. 0/1:2,1:3:22.52:23,0,68 ./. 0/0:2,0:2:3.01:0,3,45 ./. 0/0:2,0:2:6.01:0,6,63 ./. ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,40 0/0:2,0:2:6.02:0,6,78 0/0:1,0:1:3.01:0,3,36 0/0:2,0:2:3.01:0,3,35 ./. 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,33 1/1:0,2:2:6.01:65,6,0 ./. 0/0:1,0:1:3:0,3,25 ./. 14 100192989 . C A 74.33 . AC=8;AF=0.103;AN=78;BaseQRankSum=-3.510;DP=179;Dels=0.00;FS=27.569;HRun=2;HaplotypeScore=0.0880;InbreedingCoeff=-0.2034;MQ=56.98;MQ0=0;MQRankSum=0.967;QD=1.65;ReadPosRankSum=-1.187 GT:AD:DP:GQ:PL 0/1:2,1:3:17.68:18,0,33 0/1:4,2:6:20.21:20,0,129 0/0:2,2:4:6.02:0,6,76 0/0:5,4:9:9.03:0,9,122 0/0:4,3:7:6.02:0,6,73 0/1:1,4:5:26.48:26,0,32 0/0:3,0:3:6.02:0,6,79 0/0:4,0:4:9.03:0,9,117 0/0:3,2:5:6.02:0,6,78 0/1:1,0:1:1.76:0,3,28 0/0:1,0:1:3.01:0,3,37 ./. 0/0:1,1:2:3.01:0,3,30 0/0:4,2:6:9.02:0,9,105 0/1:4,3:7:20.46:20,0,98 0/0:4,1:5:6.02:0,6,75 0/0:2,0:2:6.02:0,6,77 0/0:2,1:3:6.02:0,6,76 0/1:1,3:4:27.95:57,0,28 0/0:5,1:6:12.04:0,12,155 0/0:3,0:3:3.01:0,3,35 0/0:7,1:8:18.04:0,18,206 0/1:8,4:12:15.06:15,0,220 0/0:2,0:2:6.02:0,6,68 0/0:5,0:5:6.02:0,6,73 0/0:4,0:4:6.02:0,6,80 0/0:2,4:6:6.02:0,6,75 0/0:2,1:3:3.01:0,3,39 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:6.02:0,6,78 0/0:5,3:8:15.05:0,15,187 0/1:5,2:7:19.62:20,0,66 0/0:5,0:5:9.03:0,9,110 0/0:4,1:5:9.03:0,9,111 0/0:2,0:2:3.01:0,3,36 0/0:3,2:5:6.02:0,6,76 0/0:2,1:3:6.01:0,6,64 0/0:4,0:4:6.02:0,6,77 0/0:2,1:3:6.02:0,6,73 ./. 0/0:3,1:4:9.02:0,9,95 ./. 14 100317272 . C T 742.57 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.576;DP=3145;DS;Dels=0.00;FS=3.734;HRun=0;HaplotypeScore=1.2768;InbreedingCoeff=-0.0120;MQ=59.56;MQ0=0;MQRankSum=0.264;QD=14.28;ReadPosRankSum=-1.472 GT:AD:DP:GQ:PL 0/0:78,0:78:99:0,214,2418 0/0:76,0:76:99:0,214,2411 0/0:59,0:59:99:0,168,1884 0/0:122,0:122:99:0,325,4002 0/0:90,0:90:99:0,256,3169 0/0:88,0:88:99:0,250,3056 0/0:64,0:64:99:0,171,2070 0/0:69,0:69:99:0,196,2379 0/0:75,0:75:99:0,208,2347 0/0:69,0:69:99:0,183,2051 0/0:65,0:65:99:0,180,2058 0/0:61,0:61:99:0,159,1845 0/0:62,0:62:99:0,168,1899 0/0:75,0:75:99:0,208,2370 0/0:227,0:227:99:0,608,6923 0/0:71,0:71:99:0,198,2225 0/0:80,0:80:99:0,220,2442 0/0:64,0:64:99:0,180,2046 0/0:80,0:80:99:0,220,2491 0/0:109,0:109:99:0,298,3454 0/0:79,0:79:99:0,214,2398 0/0:44,0:44:99:0,126,1412 0/0:108,0:109:99:0,307,3769 0/0:66,0:66:99:0,175,2196 0/0:77,0:77:99:0,214,2644 0/0:65,0:65:99:0,175,2187 0/0:45,0:45:99:0,126,1427 0/1:25,27:52:99:789,0,670 0/0:75,0:75:99:0,205,2350 0/0:57,0:57:99:0,156,1749 0/0:67,0:67:99:0,189,2127 0/0:91,1:92:99:0,193,2656 0/0:60,0:60:99:0,174,1966 0/0:76,0:76:99:0,208,2350 0/0:68,0:68:99:0,196,2213 0/0:61,0:61:99:0,165,1856 0/0:86,0:86:99:0,235,2643 0/0:63,0:63:99:0,177,1995 0/0:49,0:49:99:0,141,1590 0/0:61,0:61:99:0,174,1923 0/0:57,0:57:99:0,165,1815 0/0:52,0:52:99:0,156,1724 14 100380948 . T C 29063.20 . AC=49;AF=0.583;AN=84;BaseQRankSum=17.947;DP=1688;Dels=0.00;FS=1.266;HRun=1;HaplotypeScore=0.7252;InbreedingCoeff=-0.0286;MQ=59.13;MQ0=0;MQRankSum=-0.407;QD=21.87;ReadPosRankSum=-0.471 GT:AD:DP:GQ:PL 1/1:0,32:32:90.27:1117,90,0 1/1:0,30:30:78.23:992,78,0 0/1:17,19:36:99:554,0,493 0/0:72,0:72:99:0,199,2395 0/1:45,29:74:99:840,0,1319 1/1:0,49:49:99:1871,138,0 1/1:0,43:43:99:1515,111,0 0/1:30,29:59:99:881,0,747 0/1:10,19:29:99:591,0,236 0/0:41,0:41:99:0,108,1288 0/1:16,11:28:99:327,0,477 1/1:0,36:36:96.28:1186,96,0 1/1:0,22:22:57.18:725,57,0 1/1:0,29:30:75.23:948,75,0 0/0:105,0:106:99:0,265,3154 0/1:21,18:40:99:499,0,551 0/1:12,15:27:99:407,0,330 1/1:0,35:35:96.30:1210,96,0 1/1:0,45:45:99:1452,117,0 1/1:0,39:39:99:1364,108,0 0/1:24,21:45:99:513,0,622 1/1:0,30:30:87.24:1049,87,0 0/1:37,26:63:99:750,0,1039 0/1:21,26:48:99:778,0,630 0/0:43,0:43:99:0,120,1483 0/1:24,35:59:99:1039,0,601 0/1:11,15:26:99:415,0,284 1/1:0,30:30:84.25:1024,84,0 0/0:36,0:37:96.29:0,96,1184 0/1:16,25:41:99:672,0,455 1/1:0,26:26:75.23:933,75,0 0/1:15,18:33:99:564,0,396 0/0:25,0:25:72.20:0,72,849 0/1:13,11:24:99:316,0,400 1/1:0,50:51:99:1694,135,0 0/1:11,11:22:99:284,0,326 0/0:35,0:35:87.25:0,87,1055 0/1:22,16:38:99:452,0,577 0/1:16,12:28:99:382,0,391 0/1:20,12:32:99:354,0,565 0/1:12,20:32:99:586,0,334 0/1:22,25:47:99:778,0,611 14 100381013 . C T 606.93 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.650;DP=1199;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4166;InbreedingCoeff=-0.0244;MQ=58.89;MQ0=0;MQRankSum=0.204;QD=12.39;ReadPosRankSum=-0.025 GT:AD:DP:GQ:PL 0/0:21,0:21:60.16:0,60,665 0/0:20,0:20:57.15:0,57,636 0/0:28,0:28:75.20:0,75,865 0/0:36,0:36:99:0,105,1264 0/0:41,0:41:99:0,117,1425 0/0:48,0:48:99:0,126,1491 0/0:39,0:39:99:0,111,1297 0/0:34,0:34:93.27:0,93,1145 0/0:22,0:22:57.14:0,57,629 0/0:24,0:24:69.18:0,69,772 0/0:31,0:31:90.25:0,90,1042 0/0:29,0:29:87.23:0,87,976 0/0:13,0:13:39.10:0,39,422 0/0:33,0:33:90.23:0,90,1009 0/0:57,0:57:99:0,147,1697 0/0:24,0:24:69.18:0,69,762 0/0:22,0:22:63.17:0,63,697 0/0:18,0:18:54.15:0,54,609 0/0:35,0:35:99:0,99,1124 0/0:38,0:38:99:0,111,1240 0/0:28,0:28:78.21:0,78,878 0/0:29,0:29:78.21:0,78,896 0/0:31,0:31:87.26:0,87,1053 0/0:25,0:25:75.22:0,75,902 0/0:27,0:27:72.22:0,72,897 0/0:19,0:19:57.17:0,57,678 0/0:19,0:19:57.14:0,57,617 0/0:28,0:28:81.22:0,81,907 0/0:26,0:26:75.18:0,75,837 0/0:34,0:34:93.25:0,93,1055 0/0:24,0:24:69.19:0,69,779 0/0:22,0:22:63.17:0,63,705 0/0:20,0:20:57.15:0,57,636 0/0:27,0:27:78.16:0,78,835 0/0:25,0:25:75.19:0,75,827 0/0:29,0:29:87.21:0,87,938 0/0:36,0:36:93.23:0,93,1046 0/0:37,0:37:99:0,105,1184 0/0:24,0:24:69.16:0,69,751 0/1:16,11:27:99:331,0,436 0/1:11,11:22:99:339,0,264 0/0:27,0:27:78.19:0,78,862 14 100765212 . G C 937.30 . 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T A 3130.16 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.681;DP=6215;DS;Dels=0.00;FS=0.359;HRun=1;HaplotypeScore=1.4763;InbreedingCoeff=-0.0244;MQ=59.39;MQ0=0;MQRankSum=0.046;QD=9.91;ReadPosRankSum=-0.160 GT:AD:DP:GQ:PL 0/0:115,0:115:99:0,298,3632 0/0:109,0:109:99:0,289,3568 0/0:102,0:102:99:0,265,3253 0/0:250,0:250:99:0,647,8030 0/0:210,0:210:99:0,560,6996 0/0:248,0:248:99:0,659,8512 0/0:203,0:203:99:0,533,6775 0/0:235,0:235:99:0,623,7787 0/0:126,0:126:99:0,331,4015 0/0:105,0:105:99:0,274,3347 0/0:97,0:97:99:0,244,3020 0/0:102,0:102:99:0,256,3161 0/0:95,0:95:99:0,256,3103 0/0:104,0:104:99:0,274,3382 0/0:249,0:249:99:0,668,8049 0/0:84,0:84:99:0,223,2746 0/0:107,0:107:99:0,283,3455 0/0:103,0:103:99:0,295,3544 0/0:193,0:193:99:0,493,6067 0/0:199,0:199:99:0,491,6182 0/1:121,66:187:99:1742,0,3392 0/1:76,53:129:99:1450,0,2076 0/0:246,0:246:99:0,641,8013 0/0:249,0:249:99:0,644,8121 0/0:222,0:222:99:0,587,7347 0/0:243,0:243:99:0,623,7869 0/0:87,0:87:99:0,235,2866 0/0:120,0:120:99:0,334,4045 0/0:106,0:106:99:0,283,3428 0/0:113,0:113:99:0,316,3796 0/0:113,0:113:99:0,310,3793 0/0:169,0:169:99:0,436,5405 0/0:103,0:103:99:0,289,3478 0/0:120,0:120:99:0,334,4066 0/0:115,0:115:99:0,313,3826 0/0:132,0:132:99:0,352,4302 0/0:149,0:149:99:0,385,4708 0/0:120,0:120:99:0,322,3943 0/0:122,0:122:99:0,340,4109 0/0:110,0:110:99:0,313,3810 0/0:117,0:117:99:0,307,3789 0/0:106,0:106:99:0,292,3576 14 101439946 . C T 724.18 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.590;DP=3975;DS;Dels=0.00;FS=0.755;HRun=1;HaplotypeScore=1.2581;InbreedingCoeff=-0.0120;MQ=59.28;MQ0=0;MQRankSum=3.337;QD=15.41;ReadPosRankSum=0.763 GT:AD:DP:GQ:PL 0/0:100,0:100:99:0,256,3251 0/0:92,0:93:99:0,253,3188 0/0:68,0:68:99:0,187,2345 0/0:130,0:130:99:0,319,4356 0/0:121,0:121:99:0,289,4014 0/0:139,0:139:99:0,361,4937 0/0:79,0:79:99:0,211,2891 0/0:125,0:125:99:0,319,4365 0/0:81,0:81:99:0,214,2730 0/0:74,0:74:99:0,190,2414 0/0:77,0:77:99:0,202,2540 0/0:80,0:80:99:0,202,2568 0/0:85,0:85:99:0,235,2939 0/0:76,0:76:99:0,196,2484 0/0:248,0:248:99:0,614,7882 0/0:51,0:51:99:0,132,1673 0/0:83,0:83:99:0,223,2804 0/0:80,0:80:99:0,208,2640 0/0:107,0:107:99:0,274,3499 0/0:120,0:120:99:0,304,3911 0/0:110,0:110:99:0,271,3492 0/0:70,0:70:99:0,172,2194 0/0:123,0:123:99:0,313,4311 0/0:101,0:101:99:0,238,3283 0/0:133,0:133:99:0,322,4457 0/0:132,0:132:99:0,325,4447 0/0:59,0:59:99:0,156,1976 0/0:99,0:99:99:0,259,3266 0/1:21,26:47:99:770,0,584 0/0:68,0:68:99:0,178,2242 0/0:65,0:65:99:0,172,2164 0/0:94,0:94:99:0,223,2919 0/0:86,0:86:99:0,214,2759 0/0:79,0:79:99:0,211,2673 0/0:79,0:79:99:0,208,2626 0/0:101,0:101:99:0,253,3247 0/0:106,0:106:99:0,259,3295 0/0:78,0:78:99:0,199,2507 0/0:74,0:74:99:0,208,2591 0/0:94,0:94:99:0,247,3151 0/0:74,0:74:99:0,202,2548 0/0:86,0:86:99:0,232,2879 14 101442218 . A G 87489.45 . 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T C 54616.05 . AC=25;AF=0.298;AN=84;BaseQRankSum=30.809;DP=6921;DS;Dels=0.00;FS=1.577;HRun=1;HaplotypeScore=3.1810;InbreedingCoeff=0.0319;MQ=59.55;MQ0=0;MQRankSum=0.596;QD=17.08;ReadPosRankSum=-1.681 GT:AD:DP:GQ:PL 0/1:63,68:131:99:1748,0,1669 0/1:59,52:111:99:1363,0,1650 0/1:84,64:148:99:1727,0,2455 0/1:96,129:225:99:3655,0,2485 0/1:109,112:221:99:3185,0,2753 0/0:240,0:241:99:0,653,8040 0/0:195,0:196:99:0,499,6220 0/0:205,0:206:99:0,500,6277 0/1:79,60:139:99:1669,0,2164 0/0:147,0:147:99:0,361,4411 1/1:1,111:112:99:3657,259,0 1/1:0,161:161:99:5354,427,0 0/1:54,63:118:99:1790,0,1456 0/1:66,64:130:99:1828,0,1722 0/1:124,126:250:99:3595,0,3370 0/1:60,51:111:99:1379,0,1690 0/0:164,0:165:99:0,454,5486 0/0:139,0:139:99:0,403,4746 0/0:208,0:210:99:0,548,6670 0/0:208,0:209:99:0,551,6739 0/0:184,0:184:99:0,484,5943 0/0:156,0:156:99:0,424,5057 0/0:219,0:219:99:0,557,6838 0/0:198,0:200:99:0,524,6499 0/0:226,1:229:99:0,578,7203 0/0:219,1:220:99:0,528,6958 0/1:44,48:92:99:1424,0,1188 0/1:80,68:148:99:1902,0,2151 0/0:126,0:127:99:0,340,4119 0/0:127,1:128:99:0,340,4073 0/0:129,0:129:99:0,340,4162 0/1:103,127:230:99:3480,0,2625 0/0:167,0:168:99:0,409,5068 0/1:89,77:166:99:1991,0,2350 0/0:146,1:147:99:0,356,4716 0/1:73,75:148:99:2117,0,1893 0/0:153,0:154:99:0,409,4931 0/0:150,0:150:99:0,400,4852 0/1:83,56:139:99:1461,0,2260 1/1:0,139:141:99:4475,352,0 0/1:70,58:129:99:1687,0,1947 1/1:1,146:147:99:5129,380,0 14 102446161 . G A 31418.01 . 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G A 2098.73 . 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G A 1153.68 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.443;DP=2881;DS;Dels=0.00;FS=3.712;HRun=0;HaplotypeScore=1.5611;InbreedingCoeff=-0.0244;MQ=59.41;MQ0=0;MQRankSum=1.147;QD=11.42;ReadPosRankSum=-1.212 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,165,1953 0/0:58,1:59:99:0,150,2007 0/0:55,1:56:99:0,131,1821 0/0:109,1:110:99:0,275,3855 0/0:87,1:88:99:0,216,3060 0/0:97,1:99:99:0,274,3517 0/0:78,0:78:99:0,214,2770 0/0:72,0:72:99:0,208,2655 0/0:70,0:70:99:0,190,2353 0/0:52,0:53:99:0,141,1715 0/0:52,0:52:99:0,141,1751 0/0:49,0:49:99:0,141,1677 0/0:40,0:40:99:0,120,1451 0/0:58,0:58:99:0,165,1955 0/0:194,1:195:99:0,502,6140 0/0:45,0:46:99:0,120,1425 0/0:65,0:65:99:0,181,2252 0/0:66,0:66:99:0,190,2328 0/0:77,0:78:99:0,205,2457 0/0:76,0:77:99:0,199,2386 0/0:69,0:72:99:0,190,2272 0/0:41,0:42:99:0,108,1311 0/0:120,0:120:99:0,337,4355 0/0:73,0:73:99:0,202,2578 0/0:86,0:86:99:0,244,3087 0/0:65,0:66:99:0,184,2318 0/0:37,0:37:99:0,108,1298 0/0:67,0:67:99:0,186,2193 0/0:50,0:52:99:0,135,1667 0/1:26,20:46:99:560,0,734 0/0:57,0:58:99:0,159,1903 0/0:97,0:97:99:0,259,3176 0/1:29,26:55:99:656,0,818 0/0:64,0:64:99:0,171,2030 0/0:60,0:62:99:0,162,1949 0/0:57,0:57:99:0,150,1834 0/0:94,0:94:99:0,247,2942 0/0:47,0:48:99:0,132,1554 0/0:47,0:48:99:0,135,1644 0/0:63,0:63:99:0,178,2121 0/0:46,0:46:99:0,135,1619 0/0:61,0:62:99:0,178,2139 14 102514949 . G A 368.61 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.491;DP=2291;Dels=0.00;FS=1.028;HRun=2;HaplotypeScore=1.0904;InbreedingCoeff=-0.0120;MQ=59.24;MQ0=0;MQRankSum=-0.177;QD=9.70;ReadPosRankSum=-0.581 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,105,1241 0/0:56,0:56:99:0,159,1933 0/0:36,0:36:99:0,102,1237 0/0:76,0:76:99:0,211,2707 0/0:51,0:51:99:0,147,1954 0/0:57,0:57:99:0,162,2061 0/0:53,0:53:99:0,147,1916 0/0:43,0:43:99:0,123,1608 0/0:52,0:52:99:0,144,1719 0/0:43,0:43:99:0,123,1451 0/0:41,0:41:99:0,120,1430 0/0:44,0:44:99:0,126,1521 0/0:37,0:37:99:0,105,1274 0/0:46,0:46:99:0,135,1640 0/0:158,0:159:99:0,421,5191 0/0:47,0:47:99:0,132,1563 0/0:54,0:54:99:0,150,1847 0/0:57,0:57:99:0,156,1900 0/0:84,0:85:99:0,232,2777 0/0:73,0:73:99:0,202,2472 0/0:93,0:93:99:0,256,3106 0/0:53,0:53:99:0,144,1692 0/0:76,0:76:99:0,220,2812 0/0:43,0:43:99:0,126,1659 0/0:47,0:47:99:0,138,1769 0/0:36,0:36:99:0,102,1354 0/0:38,0:38:99:0,108,1321 0/1:23,15:38:99:415,0,678 0/0:49,0:49:99:0,132,1569 0/0:54,1:55:99:0,133,1879 0/0:51,0:51:99:0,150,1751 0/0:70,0:70:99:0,184,2320 0/0:47,0:48:99:0,135,1565 0/0:52,0:52:99:0,147,1783 0/0:44,0:44:99:0,123,1468 0/0:55,0:55:99:0,153,1849 0/0:75,0:75:99:0,214,2548 0/0:46,0:46:99:0,123,1517 0/0:42,0:42:99:0,120,1430 0/0:57,0:57:99:0,150,1840 0/0:41,0:41:99:0,114,1369 0/0:36,0:36:99:0,105,1279 14 102550803 . G A 77955.93 . AC=69;AF=0.821;AN=84;BaseQRankSum=-29.429;DP=3030;DS;Dels=0.00;FS=4.526;HRun=0;HaplotypeScore=0.8139;InbreedingCoeff=-0.0551;MQ=57.07;MQ0=1;MQRankSum=-8.500;QD=26.35;ReadPosRankSum=-0.720 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1758,150,0 1/1:0,65:65:99:2129,178,0 1/1:0,47:47:99:1589,138,0 1/1:0,118:118:99:3917,328,0 0/1:73,64:137:99:1807,0,2280 0/1:62,53:115:99:1484,0,2083 1/1:0,101:101:99:3307,265,0 0/1:47,59:106:99:1728,0,1422 1/1:0,64:64:99:2058,172,0 1/1:1,46:47:90.07:1465,90,0 1/1:0,49:49:99:1661,141,0 0/1:21,30:51:99:887,0,603 0/1:26,18:44:99:493,0,752 1/1:0,55:55:99:1819,153,0 1/1:1,166:167:99:5245,433,0 1/1:0,43:43:99:1453,126,0 1/1:0,50:50:99:1679,141,0 1/1:0,65:65:99:2233,190,0 1/1:0,67:68:99:2258,190,0 1/1:0,72:72:99:2284,190,0 0/1:41,31:72:99:826,0,1216 0/1:25,26:51:99:674,0,770 1/1:0,138:138:99:4700,385,0 1/1:0,117:117:99:3977,325,0 0/1:56,54:110:99:1511,0,1818 1/1:0,113:113:99:3659,298,0 1/1:0,43:43:99:1474,126,0 1/1:0,64:64:99:2101,177,0 0/1:26,24:50:99:685,0,764 1/1:0,58:58:99:1963,165,0 1/1:0,63:63:99:2141,181,0 0/0:71,0:71:99:0,190,2398 1/1:0,38:38:99:1216,102,0 1/1:0,54:54:99:1733,144,0 1/1:0,57:57:99:1853,153,0 1/1:0,51:51:99:1727,147,0 0/1:36,22:58:99:582,0,1009 1/1:0,54:54:99:1785,153,0 0/1:35,28:63:99:717,0,1105 0/1:31,30:61:99:802,0,874 1/1:0,52:52:99:1732,150,0 0/1:42,33:75:99:844,0,1272 14 102798055 . G A 383.56 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.502;DP=1331;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3953;InbreedingCoeff=-0.0244;MQ=59.10;MQ0=0;MQRankSum=0.377;QD=11.99;ReadPosRankSum=0.732 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,111,1309 0/0:25,0:25:63.18:0,63,755 0/0:16,0:16:42.13:0,42,537 0/0:25,0:25:75.22:0,75,929 0/0:28,0:28:81.25:0,81,1037 0/0:16,0:16:42.13:0,42,547 0/0:14,0:14:36.11:0,36,450 0/0:20,0:20:48.15:0,48,629 0/0:28,0:28:81.24:0,81,972 0/0:28,0:28:75.21:0,75,891 0/0:43,0:44:99:0,120,1435 0/0:24,0:24:69.20:0,69,839 0/0:17,0:17:48.15:0,48,588 0/1:5,11:16:99:300,0,149 0/0:122,0:122:99:0,301,3795 0/0:26,0:26:75.20:0,75,867 0/0:29,0:29:84.24:0,84,995 0/0:27,0:27:72.22:0,72,887 0/0:56,0:57:99:0,147,1788 0/0:66,0:66:99:0,162,2003 0/0:57,0:57:99:0,153,1847 0/0:34,0:34:93.26:0,93,1108 0/0:28,0:28:72.23:0,72,956 0/0:17,0:17:45.15:0,45,603 0/1:10,6:16:99:146,0,330 0/0:13,0:13:36.09:0,36,461 0/0:17,0:17:48.13:0,48,565 0/0:31,0:31:84.26:0,84,1039 0/0:21,0:21:57.14:0,57,658 0/0:25,1:26:41.77:0,42,818 0/0:19,0:19:54.15:0,54,659 0/0:63,0:63:99:0,162,1994 0/0:29,0:29:78.22:0,78,927 0/0:24,0:24:72.21:0,72,862 0/0:24,0:24:72.21:0,72,866 0/0:27,0:27:72.21:0,72,873 0/0:59,0:59:99:0,159,1886 0/0:44,1:45:85.10:0,85,1380 0/0:25,0:25:66.18:0,66,810 0/0:34,0:34:96.28:0,96,1154 0/0:25,0:25:72.22:0,72,889 0/0:29,0:29:84.24:0,84,989 14 102881098 . T C 5755.99 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.902;DP=6133;DS;Dels=0.00;FS=7.572;HRun=1;HaplotypeScore=1.5885;InbreedingCoeff=-0.0244;MQ=59.43;MQ0=0;MQRankSum=1.354;QD=13.58;ReadPosRankSum=0.418 GT:AD:DP:GQ:PL 0/0:120,0:120:99:0,331,4154 0/0:96,0:96:99:0,259,3265 0/0:117,0:117:99:0,325,4044 0/1:107,102:209:99:2815,0,2990 0/1:108,107:215:99:2941,0,3094 0/0:201,1:202:99:0,518,6782 0/0:159,0:159:99:0,421,5503 0/0:171,0:171:99:0,470,6048 0/0:142,0:142:99:0,373,4719 0/0:131,0:131:99:0,337,4251 0/0:135,0:135:99:0,355,4465 0/0:119,0:119:99:0,322,4074 0/0:115,0:115:99:0,316,3938 0/0:114,0:114:99:0,298,3761 0/0:247,2:249:99:0,654,8452 0/0:88,0:88:99:0,253,3139 0/0:127,0:127:99:0,361,4508 0/0:139,0:139:99:0,388,4801 0/0:184,0:184:99:0,469,5929 0/0:183,0:183:99:0,469,5974 0/0:205,0:205:99:0,539,6815 0/0:113,0:113:99:0,307,3824 0/0:233,0:233:99:0,599,7768 0/0:189,0:189:99:0,488,6313 0/0:187,1:188:99:0,470,6352 0/0:176,0:176:99:0,448,5839 0/0:85,0:85:99:0,238,2947 0/0:119,0:119:99:0,307,3897 0/0:102,0:102:99:0,268,3383 0/0:131,0:131:99:0,337,4267 0/0:121,0:121:99:0,322,4056 0/0:173,0:173:99:0,445,5660 0/0:103,0:103:99:0,274,3431 0/0:129,0:129:99:0,349,4414 0/0:124,0:124:99:0,337,4257 0/0:162,0:162:99:0,442,5579 0/0:195,1:196:99:0,493,6242 0/0:122,0:122:99:0,316,4017 0/0:127,0:127:99:0,331,4151 0/0:108,0:108:99:0,292,3684 0/0:96,0:96:99:0,274,3379 0/0:115,1:116:99:0,265,3789 14 102909991 . C T 438.40 . AC=3;AF=0.036;AN=84;BaseQRankSum=-0.868;DP=928;Dels=0.00;FS=12.326;HRun=0;HaplotypeScore=0.9399;InbreedingCoeff=-0.0371;MQ=59.11;MQ0=0;MQRankSum=1.285;QD=7.31;ReadPosRankSum=1.425 GT:AD:DP:GQ:PL 0/0:20,0:20:60.15:0,60,696 0/0:24,0:24:69.20:0,69,821 0/0:14,0:14:39.09:0,39,430 0/0:37,0:37:99:0,108,1324 0/0:38,0:38:99:0,102,1262 0/0:28,0:28:78.17:0,78,932 0/0:33,0:33:87.26:0,87,1078 0/0:19,0:19:51.13:0,51,622 0/0:22,0:22:60.14:0,60,667 0/0:14,0:14:36.09:0,36,418 0/0:25,0:25:72.18:0,72,828 0/0:20,0:20:60.16:0,60,681 0/0:16,0:16:42.10:0,42,476 0/0:17,0:17:42.12:0,42,489 0/0:59,0:59:99:0,153,1772 0/1:7,8:15:99:197,0,156 0/0:20,0:20:51.14:0,51,591 0/0:14,0:14:36.08:0,36,388 0/0:23,0:23:60.17:0,60,684 0/0:29,0:29:78.22:0,78,898 0/0:33,0:33:72.21:0,72,854 0/1:15,9:24:99:209,0,393 0/0:35,0:36:93.29:0,93,1186 0/0:22,0:22:63.18:0,63,761 0/0:33,0:33:87.27:0,87,1111 0/0:22,0:22:57.18:0,57,729 0/0:9,0:9:24.07:0,24,273 0/0:17,0:17:42.12:0,42,486 0/0:13,0:13:27.07:0,27,323 0/0:12,0:12:30.06:0,30,337 0/0:22,0:22:57.15:0,57,653 0/1:16,5:21:99:107,0,447 0/0:19,0:19:54.13:0,54,627 0/0:24,0:24:63.16:0,63,705 0/0:15,0:15:39.10:0,39,447 0/0:21,0:21:45.11:0,45,521 0/0:18,0:18:51.12:0,51,562 0/0:14,0:14:39.10:0,39,451 0/0:20,0:20:54.10:0,54,593 0/0:17,0:17:48.11:0,48,538 0/0:16,0:16:36.10:0,36,420 0/0:13,0:13:39.11:0,39,461 14 103188738 . C T 8256.71 . AC=4;AF=0.048;AN=84;BaseQRankSum=17.043;DP=5153;DS;Dels=0.00;FS=12.667;HRun=0;HaplotypeScore=2.0240;InbreedingCoeff=-0.0500;MQ=59.59;MQ0=0;MQRankSum=0.235;QD=14.90;ReadPosRankSum=-0.553 GT:AD:DP:GQ:PL 0/0:118,0:118:99:0,325,3569 0/0:103,0:103:99:0,295,3200 0/0:106,0:108:99:0,292,3224 0/0:164,0:164:99:0,469,5589 0/0:147,0:147:99:0,427,5159 0/0:123,0:123:99:0,355,4242 0/0:120,0:120:99:0,346,4125 0/0:122,0:122:99:0,343,4139 0/0:115,0:115:99:0,322,3577 0/1:67,69:136:99:1922,0,1721 0/0:99,0:99:99:0,277,3046 0/0:96,0:96:99:0,274,3050 0/0:80,1:81:99:0,190,2398 0/0:109,0:109:99:0,304,3325 0/0:249,0:249:99:0,701,7696 0/0:83,0:83:99:0,241,2617 0/0:104,0:104:99:0,286,3133 0/1:46,55:101:99:1492,0,1193 0/0:178,0:179:99:0,496,5372 0/0:210,1:211:99:0,558,6503 0/1:84,106:190:99:3118,0,1902 0/1:66,61:127:99:1725,0,1777 0/0:166,1:168:99:0,450,5716 0/0:89,0:89:99:0,259,3092 0/0:116,0:117:99:0,313,3805 0/0:87,0:88:99:0,247,3026 0/0:76,0:76:99:0,220,2418 0/0:102,1:103:99:0,289,3147 0/0:99,0:99:99:0,274,3003 0/0:91,0:91:99:0,259,2847 0/0:91,0:91:99:0,244,2709 0/0:203,0:203:99:0,553,6156 0/0:135,0:136:99:0,364,4063 0/0:84,1:85:99:0,211,2606 0/0:115,0:116:99:0,328,3561 0/0:124,0:125:99:0,337,3796 0/0:185,0:187:99:0,505,5523 0/0:115,0:116:99:0,319,3542 0/0:93,0:94:99:0,268,2918 0/0:105,0:105:99:0,301,3291 0/0:82,0:83:99:0,232,2508 0/0:95,0:95:99:0,274,2925 14 103447292 . G A 1569.42 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.724;DP=3535;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.3630;InbreedingCoeff=-0.0244;MQ=59.47;MQ0=0;MQRankSum=-0.094;QD=9.69;ReadPosRankSum=-1.730 GT:AD:DP:GQ:PL 0/0:72,0:72:99:0,199,2462 0/0:61,0:61:99:0,162,2030 0/0:70,0:70:99:0,196,2432 0/0:154,0:154:99:0,418,5570 0/0:126,0:126:99:0,349,4685 0/0:129,0:129:99:0,340,4634 0/0:94,1:95:99:0,259,3498 0/0:117,0:117:99:0,319,4252 0/0:75,0:75:99:0,208,2606 0/0:61,0:61:99:0,172,2131 0/0:77,0:77:99:0,205,2608 0/0:67,0:67:99:0,190,2357 0/0:44,0:44:99:0,123,1544 0/0:64,0:64:99:0,178,2219 0/0:218,0:219:99:0,593,7447 0/0:57,0:57:99:0,156,1951 0/0:77,0:77:99:0,220,2729 0/0:70,0:70:99:0,205,2552 0/0:94,0:94:99:0,253,3167 0/0:108,0:108:99:0,292,3714 0/0:100,0:101:99:0,268,3318 0/0:59,0:59:99:0,175,2148 0/0:143,0:143:99:0,409,5483 0/0:111,0:111:99:0,310,4143 0/0:99,0:99:99:0,283,3791 0/0:114,0:114:99:0,313,4170 0/0:57,0:57:99:0,160,2008 0/0:73,0:73:99:0,199,2470 0/0:52,0:52:99:0,153,1874 0/0:72,0:72:99:0,202,2503 0/0:60,0:60:99:0,172,2114 0/0:84,0:84:99:0,214,2708 0/0:62,0:62:99:0,166,2070 0/0:65,0:65:99:0,175,2176 0/0:52,0:52:99:0,141,1801 0/0:86,0:86:99:0,238,2904 0/1:53,37:90:99:890,0,1544 0/0:66,0:66:99:0,181,2236 0/1:44,28:72:99:742,0,1266 0/0:61,0:61:99:0,169,2134 0/0:54,0:54:99:0,153,1890 0/0:65,0:65:99:0,187,2308 14 103523512 . G T 20.20 . AC=1;AF=0.020;AN=50;BaseQRankSum=0.873;DP=49;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0266;InbreedingCoeff=-0.1749;MQ=57.89;MQ0=0;MQRankSum=0.310;QD=4.04;ReadPosRankSum=2.169 GT:AD:DP:GQ:PL 0/0:2,0:2:6.01:0,6,63 ./. 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.02:0,6,78 ./. 0/0:1,0:1:3.01:0,3,42 0/0:2,0:2:6.02:0,6,78 0/0:2,0:2:6.02:0,6,73 0/0:1,0:1:3.01:0,3,37 ./. ./. 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.01:0,6,60 0/0:2,0:2:3.01:0,3,35 ./. ./. ./. ./. ./. 0/0:3,0:3:6.01:0,6,70 0/0:3,0:3:6.01:0,6,64 0/0:2,0:2:6.01:0,6,61 0/0:1,0:1:3.01:0,3,40 ./. 0/0:1,0:1:3.01:0,3,41 0/0:5,0:5:15.05:0,15,198 0/0:1,0:1:3.01:0,3,36 0/0:1,0:1:3.01:0,3,38 0/0:2,0:2:6.02:0,6,72 ./. 0/0:1,0:1:3.01:0,3,39 0/1:3,2:5:62.09:62,0,81 ./. ./. 0/0:1,0:1:3.01:0,3,38 0/0:1,0:1:3.01:0,3,38 0/0:1,0:1:3.01:0,3,35 ./. 0/0:2,0:2:2.98:0,3,22 ./. ./. ./. 14 103570354 . G T 45.96 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.063;DP=215;Dels=0.00;FS=5.829;HRun=0;HaplotypeScore=0.3469;InbreedingCoeff=-0.0884;MQ=57.86;MQ0=0;MQRankSum=1.317;QD=11.49;ReadPosRankSum=-0.258 GT:AD:DP:GQ:PL 0/0:6,0:6:18.03:0,18,196 0/0:2,0:2:6.02:0,6,75 0/0:3,0:3:6.02:0,6,77 0/0:15,0:15:39.12:0,39,501 0/0:11,0:11:30.09:0,30,382 0/0:9,1:10:1.89:3,0,229 0/0:10,0:11:21.07:0,21,275 0/0:9,0:9:21.06:0,21,271 0/0:3,0:3:9.03:0,9,113 0/0:3,0:3:6.02:0,6,76 0/0:2,0:2:6.01:0,6,63 0/0:3,0:4:9.03:0,9,106 0/0:5,0:5:15.04:0,15,167 0/0:3,0:3:6.02:0,6,84 0/0:14,0:15:33.10:0,33,410 0/0:3,0:3:9.03:0,9,108 0/0:1,0:1:3.01:0,3,35 0/0:2,0:2:6.02:0,6,76 0/0:6,0:6:18.02:0,18,192 0/0:7,0:8:21.06:0,21,256 0/0:2,0:2:6.02:0,6,75 0/0:3,0:3:6.01:0,6,67 0/0:11,0:11:30.09:0,30,382 0/0:4,0:4:12.02:0,12,141 0/0:10,0:10:27.04:0,27,312 0/0:12,0:12:27.08:0,27,353 0/0:3,0:3:9:0,9,91 0/0:3,0:3:6.02:0,6,83 0/0:4,0:4:9.02:0,9,103 0/0:2,0:2:6.02:0,6,70 0/0:2,0:2:6.02:0,6,70 0/0:6,0:6:18.05:0,18,215 0/1:1,3:4:27.28:91,0,27 0/0:3,0:3:9.02:0,9,101 0/0:4,0:4:5.99:0,6,56 0/0:2,0:2:3.01:0,3,33 0/0:3,0:3:9.01:0,9,99 0/0:7,0:7:18.03:0,18,198 0/0:3,0:3:3.01:0,3,45 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,36 0/0:2,0:3:6.02:0,6,76 14 103592893 . G A 179.91 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.953;DP=322;Dels=0.00;FS=3.508;HRun=2;HaplotypeScore=0.2352;InbreedingCoeff=-0.0396;MQ=58.05;MQ0=0;MQRankSum=0.852;QD=10.58;ReadPosRankSum=-1.815 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,296 0/0:10,0:10:27.09:0,27,351 0/0:10,0:10:27.09:0,27,354 0/0:4,0:4:12.04:0,12,158 0/0:8,0:8:24.08:0,24,325 0/1:2,5:7:62.93:163,0,63 0/0:6,0:6:18.06:0,18,232 0/1:7,3:10:78.83:79,0,217 0/0:13,0:13:39.11:0,39,477 0/0:7,0:7:21.07:0,21,266 0/0:5,0:5:15.05:0,15,186 0/0:7,0:7:18.06:0,18,232 0/0:5,0:5:12.04:0,12,148 0/0:9,0:9:24.08:0,24,315 0/0:29,0:29:84.26:0,84,1054 0/0:6,0:6:18.06:0,18,227 0/0:6,0:6:18.06:0,18,230 0/0:6,0:6:15.04:0,15,188 0/0:11,0:11:30.09:0,30,368 0/0:15,0:15:42.13:0,42,541 0/0:10,0:10:27.02:0,27,288 0/0:4,0:4:9.03:0,9,115 0/0:6,0:6:18.06:0,18,244 0/0:7,0:7:21.07:0,21,285 0/0:7,0:7:21.06:0,21,265 0/0:2,0:2:6.02:0,6,82 0/0:10,0:10:27.08:0,27,346 0/0:7,0:7:18.06:0,18,230 0/0:7,0:7:21.07:0,21,267 0/0:4,0:4:12.04:0,12,151 0/0:11,0:11:27.09:0,27,359 0/0:2,0:2:6.02:0,6,71 0/0:5,0:5:15.05:0,15,185 0/0:7,0:7:18.05:0,18,226 0/0:6,0:6:15.05:0,15,199 0/0:6,0:6:18.06:0,18,221 0/0:5,0:5:15.05:0,15,185 0/0:13,0:13:39.12:0,39,482 0/0:7,0:7:21.06:0,21,259 0/0:3,0:3:9.03:0,9,113 0/0:6,0:6:15.05:0,15,199 0/0:5,0:5:15.04:0,15,177 14 103804286 . C A 540.26 . AC=15;AF=0.179;AN=84;BaseQRankSum=-26.781;DP=2965;Dels=0.00;FS=1751.810;HRun=2;HaplotypeScore=1.5871;InbreedingCoeff=-0.2369;MQ=59.09;MQ0=0;MQRankSum=0.254;QD=0.67;ReadPosRankSum=-23.111 GT:AD:DP:GQ:PL 0/1:35,16:51:19.48:19,0,1042 0/0:44,16:60:32.26:0,32,1314 0/1:35,16:51:91.78:92,0,1020 0/0:90,33:123:88:0,88,3005 0/0:95,37:132:2.34:1,0,3203 0/0:78,20:98:99:0,132,2529 0/0:84,32:116:99:0,137,2970 0/0:83,38:121:90.11:0,90,2836 0/1:33,17:50:73.86:74,0,1055 0/0:41,10:51:99:0,100,1386 0/0:31,21:52:5.65:0,6,1001 0/0:35,23:58:21.78:0,22,1049 0/0:44,8:52:60.66:0,61,1408 0/1:27,13:40:23.06:23,0,851 0/0:110,41:151:85.81:0,86,3232 0/1:27,12:39:2.70:3,0,840 0/0:45,17:62:41.26:0,41,1356 0/0:34,10:44:24.63:0,25,1033 0/1:46,20:66:24.51:25,0,1295 0/0:49,23:72:29.20:0,29,1328 0/0:41,21:62:2.76:0,3,1148 0/0:28,14:42:28.91:0,29,927 0/0:97,36:133:94.90:0,95,3134 0/0:65,31:96:99:0,103,2226 0/0:82,28:110:99:0,179,2933 0/0:78,40:118:99:0,128,2624 0/0:40,11:51:49.51:0,50,1247 0/1:31,13:44:71.87:72,0,890 0/0:33,18:51:39.95:0,40,987 0/1:39,17:56:30.26:30,0,982 0/0:35,16:51:0.14:0,0,1030 0/0:44,16:60:77.38:0,77,1262 0/1:33,22:55:34.40:34,0,803 0/0:45,13:58:82.84:0,83,1447 0/1:48,22:70:69.44:69,0,1421 0/0:55,22:77:53.90:0,54,1776 0/1:40,18:58:6.82:7,0,1130 0/1:37,29:66:99:116,0,1051 0/1:34,19:53:51.80:52,0,961 0/0:43,10:53:99:0,120,1458 0/1:31,9:40:17.26:17,0,894 0/1:49,23:72:54.68:55,0,1497 14 103941454 . G A 193.54 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.998;DP=1822;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=1.6370;InbreedingCoeff=-0.0120;MQ=59.09;MQ0=0;MQRankSum=-0.505;QD=6.91;ReadPosRankSum=1.236 GT:AD:DP:GQ:PL 0/0:29,0:29:81.24:0,81,990 0/0:36,0:36:99:0,102,1290 0/0:26,0:26:75.23:0,75,929 0/0:52,0:53:99:0,150,1981 0/0:56,0:56:99:0,166,2225 0/0:50,0:50:99:0,147,1987 0/0:46,0:46:99:0,132,1729 0/0:40,0:41:99:0,120,1604 0/0:33,0:33:96.25:0,96,1155 0/0:35,0:35:96.30:0,96,1220 0/0:31,0:31:84.26:0,84,1057 0/0:39,0:39:99:0,114,1437 0/0:33,0:33:96.30:0,96,1211 0/0:46,0:46:99:0,126,1579 0/0:94,0:94:99:0,259,3238 0/0:37,0:37:99:0,102,1273 0/0:39,0:39:99:0,114,1457 0/0:40,0:40:99:0,114,1454 0/0:54,0:54:99:0,141,1717 0/0:63,0:63:99:0,187,2334 0/0:62,0:62:99:0,175,2155 0/0:25,0:25:75.21:0,75,908 0/0:60,0:60:99:0,169,2275 0/0:48,0:48:99:0,141,1909 0/0:47,1:48:99:0,141,1875 0/0:40,0:40:99:0,111,1488 0/0:28,0:28:78.24:0,78,985 0/0:36,0:36:93.30:0,93,1178 0/0:31,0:31:90.26:0,90,1101 0/0:38,0:38:99:0,102,1296 0/1:19,9:28:99:240,0,591 0/0:70,1:71:99:0,205,2506 0/0:50,0:50:99:0,138,1722 0/0:36,0:36:96.28:0,96,1178 0/0:43,0:43:99:0,120,1533 0/0:40,0:40:99:0,114,1436 0/0:65,0:65:99:0,181,2211 0/0:45,0:45:99:0,129,1585 0/0:29,0:29:84.26:0,84,1045 0/0:42,0:42:99:0,117,1453 0/0:37,1:38:69.76:0,70,1282 0/0:37,0:37:99:0,111,1391 14 103941463 . T C 81.03 . AC=6;AF=0.071;AN=84;BaseQRankSum=-22.594;DP=2319;Dels=0.00;FS=1099.445;HRun=2;HaplotypeScore=1.5452;InbreedingCoeff=-0.0953;MQ=59.20;MQ0=0;MQRankSum=2.670;QD=0.27;ReadPosRankSum=-16.790 GT:AD:DP:GQ:PL 0/0:30,16:46:1.92:3,0,896 0/0:34,7:41:45.83:0,46,1120 0/1:25,7:32:22.83:23,0,701 0/0:55,16:71:99:0,153,1906 0/0:46,13:59:54.62:0,55,1631 0/0:52,11:63:99:0,147,1835 0/0:40,10:50:21.77:0,22,1227 0/0:38,15:53:17.64:0,18,1156 0/0:26,16:43:43.62:0,44,814 0/0:33,14:47:15.25:0,15,1043 0/1:29,13:42:24.12:24,0,897 0/0:40,12:52:29.96:0,30,1257 0/0:34,14:48:39.38:0,39,989 0/0:43,10:54:66.99:0,67,1338 0/0:94,32:126:55.77:0,56,2867 0/0:37,13:50:2.16:2,0,1145 0/0:40,12:52:59.13:0,59,1342 0/0:33,11:44:93.28:0,93,1141 0/0:45,22:68:23.80:0,24,1402 0/0:57,16:73:77.73:0,78,1859 0/1:58,21:80:58.37:58,0,1603 0/1:24,12:36:34.38:34,0,680 0/0:53,23:76:17.81:0,18,1771 0/0:50,6:56:99:0,144,1824 0/0:45,10:55:99:0,104,1612 0/0:43,19:62:96.65:0,97,1420 0/0:26,9:35:36.08:0,36,758 0/0:34,18:53:20.32:0,20,1038 0/0:26,12:38:22.13:0,22,778 0/0:37,12:50:90.27:0,90,1091 0/0:25,15:40:21.11:0,21,775 0/0:68,21:89:99:0,153,2058 0/0:42,14:56:65.35:0,65,1439 0/0:30,16:46:45.74:0,46,903 0/1:39,20:59:14.95:15,0,1215 0/0:39,12:52:55.85:0,56,1291 0/0:59,18:77:75.16:0,75,1916 0/0:39,10:49:46.24:0,46,1190 0/0:36,12:48:95.12:0,95,1098 0/0:36,16:52:52.02:0,52,1167 0/1:32,15:47:28.83:29,0,938 0/0:35,13:48:59.54:0,60,1182 14 104166994 . C T 537.03 . 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C T 616.39 . 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G A 18766.51 . 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T C 191213.02 . AC=84;AF=1.000;AN=84;DP=5484;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.0318;InbreedingCoeff=0.0000;MQ=58.85;MQ0=1;QD=34.87 GT:AD:DP:GQ:PL 1/1:0,92:92:99:3103,241,0 1/1:0,103:103:99:3548,277,0 1/1:0,105:106:99:3529,274,0 1/1:0,180:180:99:6434,473,0 1/1:0,186:186:99:6633,488,0 1/1:0,163:163:99:6082,451,0 1/1:0,179:179:99:6470,479,0 1/1:0,165:165:99:5959,433,0 1/1:0,114:114:99:4006,310,0 1/1:0,106:106:99:3712,289,0 1/1:0,80:80:99:2936,232,0 1/1:0,110:110:99:3914,304,0 1/1:0,116:116:99:3973,310,0 1/1:0,92:92:99:3253,253,0 1/1:0,244:246:99:8060,632,0 1/1:0,72:72:99:2660,211,0 1/1:0,104:104:99:3551,274,0 1/1:0,94:95:99:3242,256,0 1/1:0,171:172:99:5517,427,0 1/1:0,181:181:99:5937,463,0 1/1:0,221:221:99:7234,563,0 1/1:0,125:126:99:4292,337,0 1/1:0,210:210:99:7813,572,0 1/1:0,177:177:99:6336,467,0 1/1:0,190:190:99:6927,509,0 1/1:0,170:171:99:6320,464,0 1/1:0,70:70:99:2463,196,0 1/1:0,130:130:99:4536,352,0 1/1:0,83:83:99:2867,220,0 1/1:0,98:98:99:3459,271,0 1/1:0,79:79:99:2802,220,0 1/1:1,196:197:99:6543,503,0 1/1:0,128:129:99:4429,343,0 1/1:0,82:82:99:2914,229,0 1/1:0,93:93:99:3308,262,0 1/1:0,99:99:99:3541,274,0 1/1:0,187:187:99:6208,490,0 1/1:0,96:96:99:3275,256,0 1/1:0,95:96:99:3386,265,0 1/1:0,101:101:99:3528,277,0 1/1:0,77:77:99:2826,223,0 1/1:0,107:107:99:3687,289,0 14 104482329 . A AG 118.17 . AC=10;AF=0.119;AN=84;BaseQRankSum=1.986;DP=556;FS=109.320;HRun=2;HaplotypeScore=38.8323;InbreedingCoeff=-0.0843;MQ=56.73;MQ0=0;MQRankSum=0.040;QD=0.81;ReadPosRankSum=-4.253 GT:AD:DP:GQ:PL 0/1:15,0:15:43.59:44,0,194 0/0:8,0:8:12.24:0,12,124 0/1:10,0:10:4.99:5,0,149 0/0:12,0:12:1.93:3,0,54 0/0:14,0:14:16.57:0,17,172 0/0:14,0:14:23.81:0,24,193 0/0:11,0:11:1.59:4,0,167 0/0:13,0:13:14.52:0,15,148 0/1:13,0:13:24.02:24,0,245 0/0:9,0:9:20.70:0,21,223 0/0:8,0:8:14.41:0,14,157 0/1:12,0:12:11.10:11,0,85 0/0:10,0:10:26.67:0,27,226 0/0:15,0:15:20.25:0,20,151 0/1:26,0:26:58.78:59,0,425 0/0:2,0:2:5.93:0,6,54 0/0:10,0:10:10.82:0,11,121 0/0:17,0:17:5.95:0,6,383 0/0:22,0:22:5.07:0,5,391 0/0:21,0:21:43.54:0,44,432 0/0:22,0:22:33.06:0,33,386 0/0:17,0:17:9.63:0,10,311 0/0:15,0:15:32.78:0,33,316 0/0:3,0:3:5.60:0,6,36 0/0:12,0:12:11.21:0,11,94 0/1:8,0:8:2.61:31,1,0 0/0:8,0:8:11.69:0,12,102 0/0:14,0:14:9.16:0,9,169 0/0:10,0:10:11.26:0,11,98 0/0:7,0:7:14.91:0,15,164 0/0:13,0:13:30.75:0,31,274 0/0:23,0:23:43.53:0,44,483 0/1:11,0:11:11.41:11,0,145 0/0:18,0:18:15.21:0,15,421 0/0:13,0:13:26.91:0,27,311 0/0:16,0:16:35.14:0,35,415 0/1:17,0:17:32.45:32,0,323 0/0:11,0:11:22.61:0,23,252 0/0:7,0:7:14.88:0,15,146 0/0:15,0:15:29.73:0,30,325 0/1:12,0:12:11.08:11,0,203 0/1:17,5:22:20.30:20,0,361 14 104482332 . T G 1390.08 . AC=35;AF=0.417;AN=84;BaseQRankSum=-11.804;DP=518;Dels=0.00;FS=532.241;HRun=2;HaplotypeScore=0.3149;InbreedingCoeff=-0.6297;MQ=58.15;MQ0=0;MQRankSum=0.009;QD=3.33;ReadPosRankSum=-9.262 GT:AD:DP:GQ:PL 0/1:7,8:15:99:116,0,210 0/1:3,4:7:10.62:11,0,69 0/1:5,5:10:52.43:52,0,124 0/1:2,7:9:51.60:60,0,52 0/1:3,7:10:22.08:22,0,48 0/1:4,8:12:68.69:88,0,69 0/1:5,8:13:46.93:47,0,126 0/1:6,6:12:12.63:13,0,122 0/1:8,4:12:37.30:37,0,226 0/1:5,4:9:42.60:43,0,158 0/1:4,2:6:14.58:15,0,129 0/1:4,5:9:69.61:70,0,127 0/1:5,5:10:41.17:41,0,87 0/1:6,8:14:57.25:57,0,123 0/1:16,7:23:17.66:18,0,410 0/0:2,1:3:6.02:0,6,73 0/1:3,5:8:79.08:86,0,79 0/0:10,7:17:27.08:0,27,333 0/1:12,7:19:1.22:1,0,322 0/1:10,11:21:63.26:63,0,286 0/0:9,10:19:27.07:0,27,324 0/1:10,6:16:38.87:39,0,325 0/1:4,11:15:11.64:12,0,127 0/1:3,3:6:12.66:13,0,92 0/1:3,8:11:43.26:60,0,43 1/1:0,7:7:6.02:74,6,0 0/1:2,5:7:13.68:14,0,52 0/1:4,9:13:93.88:110,0,94 0/1:3,7:10:41.24:41,0,92 0/0:4,3:7:12.03:0,12,141 0/1:7,5:12:75.22:75,0,153 0/0:14,10:24:5.83:0,6,367 0/1:5,6:11:70.51:71,0,124 0/1:11,7:18:0.87:1,0,361 0/0:8,4:12:2.71:1,0,241 0/0:11,3:14:4.56:0,5,372 0/1:14,4:18:16.69:17,0,426 0/1:8,3:11:9.37:9,0,219 0/0:3,2:5:9.03:0,9,106 0/1:7,6:13:71.76:72,0,219 0/1:7,4:11:48.97:49,0,196 0/1:10,9:19:61.24:61,0,273 14 104482334 . C G 25.18 . AC=7;AF=0.083;AN=84;BaseQRankSum=-5.896;DP=420;Dels=0.00;FS=88.437;HRun=1;HaplotypeScore=0.3479;InbreedingCoeff=-0.1262;MQ=57.83;MQ0=0;MQRankSum=0.201;QD=0.43;ReadPosRankSum=-4.575 GT:AD:DP:GQ:PL 0/1:6,4:10:39.96:40,0,191 0/0:3,2:5:9.03:0,9,117 0/1:6,3:9:17.20:17,0,172 0/1:3,4:7:20.60:21,0,70 0/1:4,4:8:12.62:13,0,148 0/0:6,5:11:12.04:0,12,157 0/0:7,5:12:18.06:0,18,233 0/0:5,1:6:12.04:0,12,154 0/0:8,2:10:24.08:0,24,305 0/0:5,2:7:15.05:0,15,192 0/0:4,1:5:9.03:0,9,118 0/1:5,2:7:10.65:11,0,126 0/0:7,4:11:18.06:0,18,229 0/0:6,6:12:18.05:0,18,217 0/0:15,4:19:41.49:0,41,488 0/0:2,1:3:6.02:0,6,77 0/0:4,1:5:12.02:0,12,130 0/0:12,3:15:36.10:0,36,433 0/0:13,3:16:31.34:0,31,381 0/0:10,5:15:24.07:0,24,306 0/0:11,3:14:33.07:0,33,392 0/0:11,3:14:33.11:0,33,423 0/0:8,5:13:12.04:0,12,159 0/0:5,1:6:12.04:0,12,156 0/0:3,4:7:6.02:0,6,71 0/0:2,2:4:3.01:0,3,39 0/0:2,2:4:6.02:0,6,72 0/1:5,7:12:15.55:16,0,141 0/1:4,2:6:10.66:11,0,104 0/0:4,1:5:12.04:0,12,150 0/0:8,2:10:18.06:0,18,223 0/0:17,3:20:38.71:0,39,471 0/0:7,3:10:0.57:9,0,205 0/0:11,5:17:33.10:0,33,406 0/0:9,0:9:24.08:0,24,302 0/0:11,1:12:33.10:0,33,415 0/0:14,1:15:14.55:0,15,493 0/0:7,1:8:18.06:0,18,235 0/0:3,2:5:9.03:0,9,112 0/0:9,3:12:21.07:0,21,264 0/0:6,1:7:18.06:0,18,231 0/0:12,5:17:27.09:0,27,344 14 104488633 . C G 3813.86 . AC=5;AF=0.060;AN=84;BaseQRankSum=-1.635;DP=1848;Dels=0.00;FS=6.223;HRun=1;HaplotypeScore=0.7730;InbreedingCoeff=-0.0633;MQ=59.03;MQ0=0;MQRankSum=1.828;QD=12.63;ReadPosRankSum=-0.143 GT:AD:DP:GQ:PL 0/1:27,25:52:99:696,0,691 0/1:22,17:39:99:480,0,571 0/0:31,0:31:78.25:0,78,1012 0/0:42,0:42:99:0,114,1555 0/1:21,24:45:99:725,0,584 0/0:36,0:36:93.31:0,93,1289 0/0:29,0:29:75.25:0,75,1041 0/0:51,0:52:99:0,126,1733 0/0:39,0:39:99:0,108,1365 0/0:35,0:35:90.29:0,90,1173 0/0:41,0:41:99:0,114,1446 0/0:37,0:37:99:0,102,1293 0/0:28,0:28:81.26:0,81,1019 0/0:38,0:38:99:0,102,1325 0/1:73,53:126:99:1393,0,2013 0/1:22,18:40:99:521,0,672 0/0:38,0:38:99:0,111,1409 0/0:28,0:28:69.22:0,69,905 0/0:64,0:64:99:0,166,2134 0/0:74,0:74:99:0,193,2511 0/0:59,0:59:99:0,144,1876 0/0:41,0:41:99:0,108,1412 0/0:52,0:52:99:0,138,1902 0/0:21,0:21:54.17:0,54,719 0/0:50,0:50:99:0,123,1695 0/0:31,0:31:78.26:0,78,1069 0/0:25,0:25:75.24:0,75,949 0/0:40,0:40:99:0,111,1425 0/0:33,0:33:87.26:0,87,1111 0/0:46,0:46:99:0,120,1559 0/0:24,0:24:66.19:0,66,822 0/0:68,0:68:99:0,163,2126 0/0:56,0:56:99:0,141,1807 0/0:45,0:45:99:0,114,1468 0/0:31,0:31:84.26:0,84,1071 0/0:42,0:42:99:0,108,1403 0/0:60,0:60:99:0,153,1937 0/0:38,0:38:99:0,102,1297 0/0:42,0:42:99:0,102,1334 0/0:50,0:50:99:0,123,1598 0/0:39,0:39:99:0,102,1314 0/0:41,0:41:99:0,111,1417 14 104493091 . G C 18.98 . AC=2;AF=0.024;AN=84;BaseQRankSum=-13.816;DP=2508;Dels=0.00;FS=363.273;HRun=2;HaplotypeScore=2.7388;InbreedingCoeff=-0.0348;MQ=58.88;MQ0=0;MQRankSum=-0.039;QD=0.19;ReadPosRankSum=-8.824 GT:AD:DP:GQ:PL 0/0:37,6:43:31.72:0,32,1072 0/0:33,6:39:68.56:0,69,801 0/0:36,6:42:87.23:0,87,1015 0/0:88,26:116:99:0,183,3000 0/0:85,28:113:99:0,189,2707 0/0:72,14:86:99:0,187,2334 0/0:50,8:58:58.63:0,59,1305 0/0:63,11:74:99:0,147,1851 0/1:38,8:46:16.76:17,0,988 0/0:31,4:35:75.20:0,75,877 0/1:39,14:53:61.62:62,0,1114 0/0:44,1:46:93.27:0,93,1126 0/0:31,8:39:2.53:0,3,928 0/0:36,5:41:99:0,102,1180 0/0:104,4:110:99:0,226,2648 0/0:35,5:40:52.57:0,53,907 0/0:41,8:49:57.75:0,58,1235 0/0:36,7:44:90.17:0,90,1017 0/0:48,14:62:56.31:0,56,1240 0/0:77,2:79:99:0,199,2425 0/0:64,21:87:99:0,107,1737 0/0:69,15:84:99:0,99,1905 0/0:86,34:120:99:0,152,2645 0/0:54,13:67:99:0,132,1581 0/0:59,14:73:74.43:0,74,1673 0/0:51,12:63:79.97:0,80,1570 0/0:28,2:30:37.52:0,38,723 0/0:39,16:56:69.57:0,70,995 0/0:42,5:47:50.61:0,51,1153 0/0:38,12:50:83.62:0,84,1233 0/0:24,8:32:26.73:0,27,647 0/0:44,14:59:17.42:0,17,1075 0/0:68,11:79:99:0,174,2042 0/0:44,11:55:56.97:0,57,1188 0/0:30,8:39:73.42:0,73,904 0/0:33,6:40:10.29:0,10,810 0/0:53,12:65:99:0,104,1465 0/0:44,10:54:99:0,111,1336 0/0:55,14:69:42.95:0,43,1484 0/0:32,9:41:2.08:0,2,758 0/0:28,1:29:69.13:0,69,774 0/0:49,5:54:99:0,120,1457 14 104493091 . G GC 85.84 . AC=7;AF=0.083;AN=84;BaseQRankSum=3.517;DP=2584;FS=765.685;HRun=2;HaplotypeScore=211.9434;InbreedingCoeff=-0.1206;MQ=58.63;MQ0=0;MQRankSum=0.020;QD=0.19;ReadPosRankSum=-18.495 GT:AD:DP:GQ:PL 0/0:43,0:43:15.69:0,16,929 0/0:40,0:40:26.75:0,27,827 0/0:40,0:40:73.74:0,74,939 0/0:117,0:117:99:0,150,2551 0/0:114,0:114:99:0,181,2469 0/0:91,0:89:99:0,164,2044 0/0:59,0:58:81.90:0,82,1287 0/0:72,0:69:99:0,137,1501 0/1:47,0:47:16.04:16,0,944 0/0:34,0:34:69.24:0,69,760 0/1:54,0:54:57.74:58,0,1056 0/1:37,9:46:25.14:25,0,936 0/0:40,0:40:1.84:3,0,803 0/0:41,0:41:93.12:0,93,1170 0/1:98,30:128:17.75:18,0,1908 0/0:38,0:38:56.69:0,57,875 0/0:51,0:51:34.74:0,35,1112 0/0:41,0:40:80.28:0,80,1022 0/1:70,0:71:60.29:60,0,1003 0/0:79,8:87:99:0,128,1920 0/0:91,0:91:8.54:0,9,1202 0/0:86,0:86:99:0,102,1942 0/0:123,0:123:98.23:0,98,2150 0/0:66,0:62:99:0,116,1371 0/0:72,0:69:96.99:0,97,1376 0/0:60,0:55:72.39:0,72,1355 0/0:33,0:33:46.14:0,46,685 0/0:57,0:57:25.21:0,25,1045 0/1:48,0:48:15.06:15,0,1043 0/0:52,0:52:52.34:0,52,1128 0/0:34,0:34:24.97:0,25,646 0/0:60,0:60:48.45:0,48,1210 0/0:80,0:80:99:0,127,1996 0/0:57,0:57:34.17:0,34,1165 0/0:41,0:41:27.34:0,27,794 0/0:42,0:42:28.92:0,29,874 0/1:65,1:66:6.42:6,0,1122 0/0:55,0:55:89.47:0,89,1248 0/0:69,0:69:1.84:3,0,1246 0/0:44,0:44:1.37:4,0,757 0/0:28,3:31:10.58:0,11,619 0/0:50,13:63:17.57:0,18,1155 14 104559028 . C T 16.21 . AC=1;AF=0.013;AN=76;BaseQRankSum=1.601;DP=144;Dels=0.00;FS=2.603;HRun=0;HaplotypeScore=0.2043;InbreedingCoeff=-0.0886;MQ=58.90;MQ0=0;MQRankSum=0.615;QD=4.05;ReadPosRankSum=1.082 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,67 0/0:7,0:7:12.04:0,12,155 0/0:8,0:8:24.06:0,24,268 ./. 0/0:4,0:4:12.03:0,12,133 0/0:1,0:1:3.01:0,3,41 0/0:2,0:2:6.01:0,6,67 0/0:1,0:1:3.01:0,3,38 0/0:3,0:3:9.02:0,9,98 0/0:2,0:2:6.01:0,6,62 0/0:5,0:5:12.03:0,12,146 0/0:5,0:5:12.03:0,12,134 ./. 0/0:4,0:4:12.03:0,12,139 0/0:13,0:13:36.08:0,36,398 0/0:1,0:1:3:0,3,26 0/0:4,0:4:12.03:0,12,127 ./. 0/0:4,0:4:9.01:0,9,90 0/0:8,0:8:18.05:0,18,219 0/0:6,0:6:18.04:0,18,187 0/0:4,0:4:12.03:0,12,136 0/0:2,0:2:3.01:0,3,45 0/0:1,0:1:3.01:0,3,38 0/0:4,0:4:9.03:0,9,120 0/0:3,0:3:9.02:0,9,93 0/0:2,0:2:6.02:0,6,70 0/0:3,0:3:9.02:0,9,98 0/1:2,2:4:56.59:61,0,57 0/0:5,0:5:15.04:0,15,161 ./. 0/0:4,0:4:12.03:0,12,137 0/0:6,0:6:15.02:0,15,162 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6.01:0,6,59 0/0:2,0:2:6.02:0,6,74 0/0:7,0:7:18.05:0,18,215 0/0:3,0:3:9.02:0,9,97 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:6.02:0,6,64 0/0:3,0:3:6.01:0,6,69 0/0:5,0:5:12.03:0,12,129 14 104559037 . C T 63.22 . AC=2;AF=0.026;AN=76;BaseQRankSum=1.395;DP=136;Dels=0.00;FS=1.879;HRun=0;HaplotypeScore=0.1507;InbreedingCoeff=0.0534;MQ=58.45;MQ0=0;MQRankSum=0.169;QD=10.54;ReadPosRankSum=1.314 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,38 0/0:5,0:5:12.03:0,12,138 0/0:6,0:6:18.05:0,18,198 ./. 0/0:4,0:4:12.03:0,12,132 0/0:1,0:1:3.01:0,3,41 0/0:2,0:2:6.02:0,6,73 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.02:0,9,100 0/0:2,0:2:6:0,6,56 0/0:5,0:5:12.04:0,12,149 0/0:4,0:4:12.03:0,12,132 ./. 0/0:6,0:6:18.05:0,18,204 0/0:12,0:12:33.08:0,33,355 0/0:1,0:1:3.01:0,3,32 0/0:3,0:3:6.02:0,6,70 0/0:1,0:1:3.01:0,3,34 0/0:8,0:8:21.05:0,21,234 0/0:7,0:7:15.04:0,15,183 0/0:4,0:4:9.03:0,9,102 0/0:3,0:3:9.01:0,9,91 0/1:0,1:1:1.76:38,3,0 0/0:1,0:1:3.01:0,3,36 0/0:4,0:4:9.03:0,9,122 0/0:4,0:4:6.02:0,6,68 0/0:3,0:3:9.03:0,9,105 0/0:5,0:5:12.03:0,12,133 0/0:4,0:4:12.03:0,12,136 0/0:3,0:3:9.02:0,9,100 0/0:1,0:1:3.01:0,3,38 0/1:2,3:5:55.25:88,0,55 0/0:5,0:5:12.02:0,12,133 ./. 0/0:2,0:2:6.01:0,6,63 0/0:2,0:2:6.01:0,6,65 0/0:8,0:8:18.05:0,18,217 ./. 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6.01:0,6,63 0/0:3,0:3:6.02:0,6,75 0/0:2,0:2:3.01:0,3,30 14 104571054 . C G 2978.04 . AC=13;AF=0.155;AN=84;BaseQRankSum=-2.958;DP=909;Dels=0.00;FS=4.039;HRun=1;HaplotypeScore=0.6618;InbreedingCoeff=-0.1857;MQ=58.75;MQ0=0;MQRankSum=0.585;QD=13.00;ReadPosRankSum=-0.957 GT:AD:DP:GQ:PL 0/0:22,0:22:63.19:0,63,786 0/1:10,5:15:99:100,0,339 0/1:7,4:11:99:120,0,219 0/0:53,0:53:99:0,144,1887 0/0:43,0:43:99:0,129,1668 0/0:32,0:32:81.25:0,81,1062 0/0:21,0:22:54.16:0,54,694 0/0:26,0:26:66.21:0,66,875 0/1:9,6:15:99:156,0,270 0/1:4,11:15:99:326,0,109 0/1:9,7:16:99:189,0,247 0/0:14,0:14:36.11:0,36,460 0/0:12,0:12:30.10:0,30,393 0/0:19,0:19:57.18:0,57,708 0/0:41,0:41:99:0,102,1318 0/0:26,0:26:69.21:0,69,857 0/0:18,0:18:48.15:0,48,607 0/0:15,0:15:36.11:0,36,443 0/0:21,0:21:60.19:0,60,753 0/0:28,0:28:78.24:0,78,983 0/1:17,15:32:99:423,0,440 0/0:23,0:24:60.19:0,60,747 0/0:65,0:65:99:0,172,2229 0/0:22,0:22:63.19:0,63,783 0/0:24,0:24:66.21:0,66,882 0/0:19,1:20:8.50:0,9,583 0/1:9,12:21:99:367,0,257 0/1:10,8:18:99:194,0,270 0/0:15,0:15:36.10:0,36,451 0/0:17,0:17:45.14:0,45,572 0/0:13,0:13:39.13:0,39,501 0/1:9,8:17:99:215,0,289 0/0:15,0:15:42.12:0,42,521 0/0:11,0:11:33.08:0,33,392 0/0:18,1:19:15.57:0,16,594 0/0:20,0:20:51.15:0,51,629 0/1:13,11:24:99:322,0,320 0/1:6,8:14:99:252,0,174 0/0:12,1:13:36.07:0,36,411 0/1:10,6:16:99:186,0,297 0/0:10,0:10:27.07:0,27,339 0/1:5,10:15:99:277,0,153 14 104638077 . G C 16.78 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.433;DP=220;Dels=0.00;FS=2.849;HRun=0;HaplotypeScore=0.3097;InbreedingCoeff=-0.0639;MQ=57.78;MQ0=0;MQRankSum=-0.851;QD=5.59;ReadPosRankSum=1.627 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,75 0/0:3,0:3:6.02:0,6,84 0/0:2,0:2:6.02:0,6,77 0/0:8,0:8:21.07:0,21,286 0/0:6,0:6:15.05:0,15,204 0/0:5,0:5:12.04:0,12,153 0/0:4,0:4:12.04:0,12,162 0/0:6,0:6:12.04:0,12,170 0/0:2,0:2:6.02:0,6,78 0/0:5,0:5:15.04:0,15,185 0/0:1,0:1:3.01:0,3,39 0/0:6,0:6:15.05:0,15,189 0/0:3,0:3:9.03:0,9,115 0/0:4,0:4:12.03:0,12,145 0/0:18,0:18:45.14:0,45,567 0/0:6,0:6:18.05:0,18,213 0/0:6,0:6:15.05:0,15,198 0/0:2,0:2:6.02:0,6,74 0/0:6,0:6:15.04:0,15,175 0/0:15,0:15:36.12:0,36,472 0/0:4,0:4:9.03:0,9,118 0/0:3,0:3:6.02:0,6,78 0/0:12,0:12:33.11:0,33,450 0/0:2,0:2:6.02:0,6,80 0/0:4,0:4:12.03:0,12,138 0/0:11,0:11:30.09:0,30,386 0/0:2,0:2:6.02:0,6,79 0/0:4,0:4:12.04:0,12,153 0/0:2,0:2:6.02:0,6,78 0/0:5,0:5:12.04:0,12,148 0/0:3,0:3:9.03:0,9,116 0/0:8,0:8:21.07:0,21,274 0/0:8,0:8:24.07:0,24,290 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,39 0/0:5,0:5:12.03:0,12,148 0/0:8,0:8:21.07:0,21,260 0/1:1,2:3:26.23:62,0,26 0/0:8,0:8:21.04:0,21,249 0/0:6,0:6:12.04:0,12,167 0/0:3,0:3:6.02:0,6,78 0/0:7,0:7:12.03:0,12,154 14 104638113 . G A 88.12 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.731;DP=226;Dels=0.00;FS=2.052;HRun=1;HaplotypeScore=0.2234;InbreedingCoeff=-0.0599;MQ=58.52;MQ0=0;MQRankSum=-0.716;QD=14.69;ReadPosRankSum=1.044 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,38 0/0:3,0:3:6.02:0,6,83 0/0:4,0:4:6.01:0,6,73 0/0:8,0:8:24.08:0,24,321 0/0:6,0:6:15.05:0,15,208 0/0:6,0:6:15.05:0,15,211 0/0:4,0:4:12.04:0,12,157 0/0:3,0:3:9.03:0,9,124 0/0:2,0:2:6.02:0,6,77 0/0:4,0:4:12.04:0,12,154 0/0:2,0:2:6.02:0,6,73 0/0:6,0:6:18.06:0,18,230 0/0:5,0:5:12.04:0,12,159 0/0:7,0:7:21.07:0,21,262 0/0:11,0:11:30.10:0,30,381 0/0:6,0:6:18.05:0,18,221 0/0:7,0:7:18.06:0,18,238 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,40 0/0:17,0:17:39.13:0,39,519 0/0:6,0:6:15.05:0,15,201 0/1:2,4:6:60.57:134,0,61 0/0:9,0:9:24.08:0,24,327 0/0:8,0:8:15.05:0,15,209 0/0:3,0:3:6.02:0,6,87 0/0:5,0:6:9.03:0,9,126 0/0:6,0:6:15.05:0,15,197 0/0:3,0:3:9.03:0,9,109 0/0:2,0:2:6.02:0,6,74 0/0:4,0:4:12.04:0,12,146 0/0:5,0:5:12.04:0,12,162 0/0:8,0:8:21.06:0,21,258 0/0:5,0:5:9.03:0,9,123 0/0:2,0:2:6.02:0,6,76 0/0:3,0:3:9.03:0,9,118 0/0:6,0:6:18.05:0,18,216 0/0:10,0:10:21.07:0,21,278 0/0:3,0:3:6.02:0,6,84 0/0:7,0:7:21.07:0,21,268 0/0:7,0:7:21.07:0,21,266 0/0:8,0:8:18.06:0,18,243 0/0:5,0:5:15.05:0,15,190 14 104640098 . G A 620.06 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.754;DP=638;Dels=0.00;FS=7.090;HRun=0;HaplotypeScore=0.9623;InbreedingCoeff=-0.0648;MQ=58.20;MQ0=0;MQRankSum=0.210;QD=10.88;ReadPosRankSum=2.186 GT:AD:DP:GQ:PL 0/0:10,0:10:24.07:0,24,304 0/0:11,0:11:33.07:0,33,357 0/0:11,0:11:24.05:0,24,259 0/0:32,0:32:87.26:0,87,1053 0/0:31,0:32:87.24:0,87,1047 0/0:23,0:23:63.18:0,63,747 0/0:24,0:24:69.20:0,69,829 0/0:20,0:20:57.16:0,57,688 0/0:6,0:6:12.03:0,12,136 0/1:6,5:11:99:141,0,164 0/0:3,0:3:6.01:0,6,63 0/0:15,0:15:42.11:0,42,467 0/0:3,0:3:6.02:0,6,65 0/0:11,0:11:30.08:0,30,342 0/0:35,0:36:96.24:0,96,1093 0/0:18,0:18:54.14:0,54,609 0/0:7,0:7:21.06:0,21,238 0/0:12,0:12:36.08:0,36,404 0/0:17,0:18:39.08:0,39,437 0/0:28,0:28:81.21:0,81,902 0/1:15,10:25:99:245,0,381 0/1:9,12:21:99:306,0,223 0/0:41,0:41:99:0,114,1365 0/0:8,1:9:1.33:4,0,254 0/0:18,0:18:48.12:0,48,561 0/0:14,0:14:39.07:0,39,431 0/0:9,0:9:24.05:0,24,248 0/0:15,0:15:42.08:0,42,446 0/0:6,0:6:15.04:0,15,161 0/0:10,0:10:30.06:0,30,319 0/0:12,0:12:36.08:0,36,387 0/0:24,0:24:54.14:0,54,633 0/0:17,0:17:45.10:0,45,487 0/0:9,0:9:27.07:0,27,304 0/0:7,0:7:18.04:0,18,190 0/0:10,0:10:30.06:0,30,321 0/0:17,0:17:39.10:0,39,442 0/0:9,0:9:24.05:0,24,269 0/0:10,0:10:21.06:0,21,242 0/0:9,0:9:27.05:0,27,294 0/0:7,1:8:0.87:7,0,191 0/0:7,0:7:21.03:0,21,224 14 105054628 . G C 13.35 . AC=1;AF=0.012;AN=84;BaseQRankSum=-8.703;DP=4443;DS;Dels=0.00;FS=1027.750;HRun=2;HaplotypeScore=4.5425;InbreedingCoeff=-0.0120;MQ=58.70;MQ0=0;MQRankSum=-0.773;QD=0.09;ReadPosRankSum=-17.901 GT:AD:DP:GQ:PL 0/0:75,17:93:99:0,167,1997 0/0:73,12:85:99:0,150,1868 0/0:65,18:83:80.11:0,80,1689 0/0:168,54:223:99:0,403,4866 0/0:115,32:147:99:0,266,3630 0/0:99,20:119:99:0,169,2510 0/0:89,12:103:99:0,226,2624 0/0:107,18:125:99:0,269,3078 0/0:69,13:82:99:0,137,1884 0/0:66,10:76:99:0,159,1717 0/0:66,17:85:99:0,127,1573 0/0:63,10:73:99:0,146,1561 0/0:54,12:66:40.89:0,41,1357 0/0:68,13:81:99:0,114,1735 0/0:196,53:250:99:0,273,4875 0/0:70,8:78:99:0,154,1873 0/0:65,22:89:68.33:0,68,1755 0/0:70,7:78:99:0,171,1840 0/0:104,26:130:98.93:0,99,2648 0/0:144,22:166:99:0,330,3594 0/0:95,21:116:99:0,171,2445 0/0:79,16:95:99:0,170,2012 0/0:149,45:195:99:0,287,4209 0/0:93,25:118:99:0,185,2577 0/0:111,15:126:99:0,271,3123 0/0:85,21:107:99:0,214,2508 0/0:50,11:61:99:0,107,1418 0/0:66,13:79:99:0,116,1729 0/0:56,14:70:68.47:0,68,1484 0/0:77,15:92:99:0,128,1991 0/0:60,17:77:82.47:0,82,1457 0/0:139,26:165:99:0,306,3558 0/0:88,21:109:99:0,115,2080 0/0:60,10:70:99:0,113,1478 0/0:55,9:64:77.44:0,77,1365 0/0:94,16:110:99:0,195,2319 0/1:113,38:151:59.35:59,0,2606 0/0:63,10:73:99:0,132,1586 0/0:95,13:108:99:0,139,2255 0/0:65,10:75:99:0,107,1601 0/0:67,12:79:99:0,171,1824 0/0:58,13:71:88.51:0,89,1357 14 105054631 . A C 2850.98 . AC=19;AF=0.226;AN=84;BaseQRankSum=-42.247;DP=5049;DS;Dels=0.00;FS=3200.000;HRun=2;HaplotypeScore=4.6193;InbreedingCoeff=-0.2979;MQ=58.80;MQ0=0;MQRankSum=-1.056;QD=1.11;ReadPosRankSum=-35.290 GT:AD:DP:GQ:PL 0/0:63,34:98:8.95:0,9,1839 0/0:63,30:96:90.14:0,90,1895 0/1:60,33:93:63.77:64,0,1704 0/1:146,104:250:82.49:82,0,4089 0/0:113,45:158:83.68:0,84,3520 0/1:80,71:152:39.51:40,0,2332 0/0:84,44:129:34.89:0,35,2431 0/0:95,55:150:99:0,147,2711 0/1:64,33:98:60.59:61,0,1860 0/0:57,25:83:81.64:0,82,1768 0/0:59,36:96:12.85:0,13,1662 0/0:55,25:80:61.19:0,61,1589 0/0:52,28:80:43.42:0,43,1596 0/0:58,31:89:44.72:0,45,1813 0/1:132,114:250:99:597,0,3407 0/0:63,22:85:72.21:0,72,2045 0/1:54,39:93:99:145,0,1596 0/0:54,24:78:62.95:0,63,1682 0/1:96,52:149:99:229,0,2604 0/0:127,60:187:99:0,108,3650 0/1:87,58:145:99:238,0,2363 0/0:73,41:114:39.40:0,39,2074 0/1:129,103:232:99:383,0,3612 0/1:86,50:136:51.36:51,0,2448 0/1:100,52:152:9.48:9,0,2781 0/1:74,54:129:99:236,0,2104 0/1:44,22:66:3.23:3,0,1235 0/0:58,40:98:2.23:2,0,1727 0/1:50,29:79:11.06:11,0,1572 0/0:62,32:94:18.16:0,18,1884 0/0:56,31:87:95.50:0,96,1807 0/0:126,74:202:99:0,179,3671 0/1:75,48:123:30.83:31,0,1953 0/1:52,25:77:99:117,0,1524 0/1:44,29:73:57.82:58,0,1327 0/0:82,35:117:82.20:0,82,2416 0/1:97,76:173:99:537,0,2577 0/1:54,35:89:99:122,0,1562 0/0:82,38:121:72.18:0,72,2402 0/0:60,24:84:40.59:0,41,1910 0/0:59,27:86:71.17:0,71,1863 0/0:49,28:77:89.38:0,89,1581 14 105054934 . A G 117.39 . 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TGACGGGCAG T 327.83 . AC=5;AF=0.132;AN=38;BaseQRankSum=3.276;DP=76;FS=0.000;HRun=0;HaplotypeScore=18.0947;InbreedingCoeff=0.2185;MQ=55.86;MQ0=0;MQRankSum=-3.465;QD=9.11;ReadPosRankSum=0.354 GT:AD:DP:GQ:PL ./.:.:1:.:0,0,0 ./.:.:2:.:0,0,0 ./.:.:2:.:0,0,0 0/1:0,1:1:1.76:85,3,0 ./. ./. ./.:.:1:.:0,0,0 ./. 0/0:2,0:2:6.02:0,6,241 0/0:2,0:2:6.02:0,6,205 0/0:2,0:2:6.02:0,6,211 ./.:.:3:.:0,0,0 0/0:2,0:2:3.01:0,3,135 0/0:2,0:2:6.02:0,6,206 0/0:7,0:7:21.07:0,21,835 0/0:3,0:3:6.02:0,6,276 ./. ./.:.:1:.:0,0,0 0/1:2,1:3:1.76:85,3,0 0/0:2,0:2:3.01:0,3,139 ./. 0/1:6,2:8:99:155,0,293 ./. ./. ./. ./. 0/0:2,0:2:3.01:0,3,136 ./.:.:2:.:0,0,0 0/0:3,0:3:6.02:0,6,278 0/0:1,0:1:1.25:0,1,3 ./.:.:4:.:0,0,0 0/0:2,0:2:3.01:0,3,139 0/0:6,0:6:3.01:0,3,130 ./.:.:2:.:0,0,0 ./.:.:1:.:0,0,0 ./.:.:2:.:0,0,0 0/0:2,0:2:3.01:0,3,139 0/0:2,0:2:3.01:0,3,129 ./. ./.:.:1:.:0,0,0 ./. 1/1:1,1:2:3.01:85,3,0 14 105177417 . G C 657.43 . AC=25;AF=0.298;AN=84;BaseQRankSum=-6.245;DP=390;Dels=0.00;FS=96.769;HRun=1;HaplotypeScore=0.7130;InbreedingCoeff=-0.2897;MQ=57.25;MQ0=0;MQRankSum=-0.868;QD=2.77;ReadPosRankSum=-3.734 GT:AD:DP:GQ:PL 0/0:4,0:4:9.01:0,9,97 0/1:2,3:5:25.35:44,0,25 0/1:6,2:8:17.66:18,0,68 0/1:6,8:14:67.70:68,0,139 0/1:5,7:12:47.18:47,0,69 0/0:6,1:7:12.02:0,12,140 0/0:5,0:5:6.01:0,6,66 0/0:3,2:5:6.02:0,6,81 0/1:2,2:4:24.42:24,0,55 0/1:8,7:16:29.23:29,0,183 0/0:4,0:4:6.02:0,6,72 0/1:7,4:11:34.36:34,0,54 0/1:5,3:8:9.70:10,0,72 0/0:10,4:14:24.06:0,24,270 0/1:15,11:26:68.49:68,0,286 0/0:4,2:6:9.03:0,9,109 0/0:3,3:6:9.03:0,9,112 1/1:3,5:8:6:53,6,0 0/1:6,5:11:29.34:29,0,130 0/0:8,3:11:15.03:0,15,162 0/1:4,4:8:20.23:20,0,117 0/0:8,3:11:17.54:0,18,188 0/0:2,4:6:3.01:0,3,40 1/1:1,2:3:6.01:58,6,0 0/1:4,5:9:18.64:19,0,66 0/1:3,4:7:13.71:14,0,64 0/0:3,0:3:9.03:0,9,112 0/0:5,2:7:15.05:0,15,180 0/0:2,2:4:6.02:0,6,68 0/0:7,3:10:12.02:0,12,131 0/1:3,5:8:42.33:42,0,47 0/0:10,7:17:0.30:0,0,182 0/1:6,7:13:15.93:16,0,190 0/1:4,3:7:42.25:42,0,89 0/0:7,4:11:12.03:0,12,142 0/1:5,6:11:48.42:48,0,108 0/0:12,3:15:21.06:0,21,238 0/1:7,6:13:59.92:60,0,157 0/0:4,3:7:9.02:0,9,103 0/1:7,4:11:7.67:8,0,145 0/1:8,6:14:30.32:30,0,139 0/1:4,6:10:47.08:47,0,89 14 105361058 . C T 991.91 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.697;DP=3008;Dels=0.00;FS=4.570;HRun=0;HaplotypeScore=2.0163;InbreedingCoeff=-0.0244;MQ=58.60;MQ0=0;MQRankSum=0.654;QD=8.20;ReadPosRankSum=1.424 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,156,1964 0/0:38,1:39:73.97:0,74,1264 0/0:39,0:39:99:0,102,1309 0/0:167,0:167:99:0,406,5568 0/0:155,0:155:99:0,394,5396 0/0:108,0:108:99:0,259,3570 0/0:79,0:79:99:0,184,2552 0/0:107,0:107:99:0,265,3601 0/0:48,0:48:99:0,120,1542 0/0:51,1:52:99:0,138,1741 0/0:50,0:50:99:0,141,1792 0/0:44,0:44:99:0,120,1546 0/0:31,0:31:90.24:0,90,1112 0/0:41,0:41:99:0,114,1435 0/0:211,0:211:99:0,497,6457 0/0:59,0:59:99:0,153,1954 0/0:46,0:46:99:0,120,1540 0/0:35,0:35:96.29:0,96,1193 0/0:108,0:108:99:0,265,3335 0/0:106,0:106:99:0,289,3688 0/0:94,0:94:99:0,247,3070 0/0:65,0:65:99:0,162,2082 0/0:176,0:176:99:0,445,6067 0/1:35,16:51:99:405,0,1007 0/0:79,0:79:99:0,202,2742 0/1:43,27:70:99:649,0,1217 0/0:40,0:40:99:0,105,1340 0/0:43,0:43:99:0,129,1596 0/0:48,0:49:99:0,126,1613 0/0:55,0:55:99:0,144,1849 0/0:53,0:53:99:0,135,1725 0/0:105,0:105:99:0,250,3251 0/0:83,0:83:99:0,211,2708 0/0:49,0:49:99:0,138,1751 0/0:40,0:40:99:0,102,1338 0/0:55,0:55:99:0,147,1861 0/0:95,0:95:99:0,229,2925 0/0:41,0:41:99:0,111,1400 0/0:49,0:49:99:0,138,1753 0/0:53,0:53:99:0,138,1743 0/0:35,0:35:99:0,99,1215 0/0:47,0:47:99:0,129,1626 14 105394196 . T C 52.07 . AC=8;AF=0.100;AN=80;BaseQRankSum=-7.069;DP=347;Dels=0.00;FS=55.899;HRun=2;HaplotypeScore=0.2725;InbreedingCoeff=-0.0656;MQ=57.63;MQ0=0;MQRankSum=-0.531;QD=0.65;ReadPosRankSum=-3.844 GT:AD:DP:GQ:PL 0/0:1,2:4:3:0,3,27 0/1:3,5:8:24.09:24,0,101 0/0:7,0:7:12.02:0,12,126 0/0:9,8:17:18.06:0,18,235 0/0:9,11:20:24.07:0,24,293 0/0:4,2:6:9.03:0,9,112 0/0:11,2:13:18.05:0,18,209 0/0:5,0:5:6.02:0,6,72 0/0:4,2:6:9.03:0,9,104 ./. 0/0:6,1:7:15.04:0,15,177 0/0:4,2:6:6.02:0,6,76 ./. 0/0:7,3:10:12.03:0,12,144 0/1:18,11:29:39.38:39,0,401 0/1:1,4:5:1.76:32,3,0 0/0:6,0:6:15.03:0,15,161 0/0:5,2:7:6.02:0,6,76 0/0:8,1:9:21.04:0,21,235 0/0:12,1:13:30.08:0,30,357 0/1:7,3:10:10.60:11,0,151 0/1:5,2:7:18.56:19,0,98 0/0:9,10:19:2.27:2,0,232 0/0:3,1:4:9.01:0,9,93 0/0:11,4:15:16.92:0,17,201 0/0:6,1:7:6.02:0,6,73 0/0:2,1:3:6.02:0,6,76 0/0:2,3:5:6.02:0,6,74 0/0:5,0:5:15.04:0,15,180 0/0:5,1:6:12.04:0,12,148 0/1:3,1:4:15.63:16,0,97 0/0:12,4:16:27.08:0,27,327 0/0:6,1:7:9.02:0,9,105 0/0:3,1:4:3.01:0,3,36 0/0:2,1:3:2.98:0,3,22 0/0:5,2:7:15.04:0,15,177 0/1:6,4:10:5.95:6,0,163 0/0:8,1:9:18.06:0,18,219 0/0:3,4:7:6.02:0,6,71 0/1:4,3:7:15.63:16,0,97 0/0:2,4:6:3.01:0,3,37 0/0:2,2:4:3.01:0,3,39 14 105423809 . G A 799.25 . AC=5;AF=0.060;AN=84;BaseQRankSum=-2.057;DP=577;Dels=0.00;FS=11.937;HRun=0;HaplotypeScore=0.5587;InbreedingCoeff=-0.0645;MQ=59.02;MQ0=0;MQRankSum=0.147;QD=12.69;ReadPosRankSum=0.118 GT:AD:DP:GQ:PL 0/0:10,0:10:30.08:0,30,340 0/0:10,0:10:30.08:0,30,348 0/0:10,0:10:30.09:0,30,353 0/0:24,0:24:57.17:0,57,738 0/0:28,0:28:69.21:0,69,901 0/0:10,0:10:27.08:0,27,340 0/0:9,0:9:24.08:0,24,315 0/0:13,0:13:33.07:0,33,403 0/1:4,8:13:99:167,0,104 0/0:13,0:13:33.10:0,33,401 0/1:6,5:11:99:110,0,181 0/0:15,0:15:42.10:0,42,467 0/0:11,0:11:33.09:0,33,375 0/0:14,0:14:42.12:0,42,480 0/0:22,0:22:54.14:0,54,615 0/0:17,0:17:48.13:0,48,547 0/0:14,0:14:42.09:0,42,446 0/0:12,0:12:33.10:0,33,402 0/0:15,0:15:45.12:0,45,519 0/0:21,0:21:57.16:0,57,660 0/0:21,0:21:54.09:0,54,598 0/0:15,0:15:42.12:0,42,499 0/0:17,0:17:45.14:0,45,586 0/0:15,0:15:42.13:0,42,549 0/0:13,0:13:30.09:0,30,378 0/0:9,0:9:21.07:0,21,281 0/0:4,0:4:12.04:0,12,143 0/0:12,0:12:30.08:0,30,345 0/1:6,3:9:80.18:80,0,194 0/0:8,0:8:24.07:0,24,273 0/0:12,0:12:36.09:0,36,403 0/0:12,0:12:36.09:0,36,420 0/0:15,0:15:45.12:0,45,507 0/0:12,0:12:33.09:0,33,376 0/0:9,0:9:27.07:0,27,298 0/0:14,0:14:42.11:0,42,471 0/0:17,0:17:42.10:0,42,497 0/0:11,0:11:33.07:0,33,371 0/0:12,0:12:33.10:0,33,394 0/1:4,13:17:85.26:368,0,85 0/1:7,6:13:99:171,0,184 0/0:17,0:17:51.14:0,51,589 14 105611282 . A G 9029.78 . AC=61;AF=0.726;AN=84;BaseQRankSum=-3.084;DP=412;Dels=0.00;FS=4.939;HRun=1;HaplotypeScore=0.2317;InbreedingCoeff=0.0386;MQ=58.53;MQ0=0;MQRankSum=-0.814;QD=23.39;ReadPosRankSum=-0.645 GT:AD:DP:GQ:PL 1/1:0,12:12:36.09:402,36,0 1/1:0,6:6:15.04:180,15,0 0/1:9,5:14:99:101,0,261 1/1:0,12:12:33.10:403,33,0 1/1:0,19:19:54.15:648,54,0 1/1:0,16:16:39.10:457,39,0 1/1:0,7:7:18.06:241,18,0 1/1:0,5:5:15.05:185,15,0 0/1:3,7:10:83.87:177,0,84 1/1:0,9:9:24.06:274,24,0 0/0:6,0:6:18.06:0,18,221 1/1:0,9:9:24.07:291,24,0 0/1:2,0:2:0.97:0,6,57 1/1:0,9:9:24.04:276,24,0 0/1:23,12:35:99:318,0,637 1/1:0,14:14:42.12:486,42,0 0/1:2,7:9:48.52:200,0,49 0/1:7,3:10:72.53:73,0,234 0/1:1,5:6:19.75:149,0,20 1/1:0,13:13:39.11:457,39,0 0/1:10,3:13:61.54:62,0,330 0/0:13,0:13:36.10:0,36,418 0/1:9,8:17:99:223,0,260 1/1:0,3:3:6.02:82,6,0 1/1:0,11:11:33.10:412,33,0 0/1:3,4:7:59.73:108,0,60 1/1:0,6:6:18.04:199,18,0 1/1:0,7:7:21.05:234,21,0 0/1:5,6:11:99:168,0,145 1/1:0,10:10:30.09:359,30,0 1/1:0,9:9:21.06:250,21,0 0/1:5,3:8:72.47:72,0,141 1/1:0,9:9:27.08:312,27,0 0/1:4,2:6:45.43:45,0,135 0/1:1,8:9:12.06:230,0,12 0/1:2,2:4:61.01:61,0,64 1/1:0,11:11:27.06:284,27,0 1/1:0,6:6:18.05:213,18,0 0/1:4,4:8:99:123,0,121 0/1:5,2:7:43.20:43,0,163 1/1:0,7:7:21.05:231,21,0 0/0:7,0:7:21.07:0,21,264 14 105622160 . G A 1339.76 . AC=2;AF=0.024;AN=84;BaseQRankSum=-9.295;DP=899;Dels=0.00;FS=0.540;HRun=0;HaplotypeScore=0.6655;InbreedingCoeff=-0.0244;MQ=58.87;MQ0=0;MQRankSum=0.853;QD=13.13;ReadPosRankSum=0.833 GT:AD:DP:GQ:PL 0/0:13,0:13:36.12:0,36,461 0/0:19,0:19:48.13:0,48,609 0/0:16,0:16:45.14:0,45,570 0/0:25,0:25:72.23:0,72,943 0/0:38,0:38:99:0,108,1442 0/0:24,0:24:66.19:0,66,865 0/0:10,0:10:27.08:0,27,357 0/0:19,0:19:51.17:0,51,690 0/0:18,0:18:51.16:0,51,636 0/0:21,0:21:54.17:0,54,703 0/0:18,0:18:51.16:0,51,645 0/0:14,0:14:36.11:0,36,454 0/0:19,0:19:57.18:0,57,717 0/0:17,0:17:48.15:0,48,599 0/1:36,45:81:99:1043,0,957 0/1:9,12:21:99:359,0,247 0/0:15,0:15:42.14:0,42,541 0/0:16,0:16:42.13:0,42,519 0/0:27,0:27:66.19:0,66,822 0/0:16,0:16:42.13:0,42,539 0/0:27,0:28:75.23:0,75,930 0/0:20,0:20:57.16:0,57,719 0/0:36,0:36:99:0,99,1323 0/0:19,0:19:54.17:0,54,690 0/0:21,0:21:63.17:0,63,811 0/0:20,0:20:48.13:0,48,611 0/0:18,0:18:48.12:0,48,573 0/0:22,0:22:63.20:0,63,794 0/0:13,0:13:33.10:0,33,423 0/0:21,0:21:57.17:0,57,702 0/0:19,0:19:57.17:0,57,696 0/0:16,0:16:36.07:0,36,414 0/0:28,0:28:69.21:0,69,875 0/0:13,0:13:36.10:0,36,430 0/0:19,0:19:54.17:0,54,687 0/0:16,0:16:48.15:0,48,600 0/0:27,0:27:75.20:0,75,894 0/0:14,0:14:39.12:0,39,490 0/0:22,0:22:54.17:0,54,693 0/0:13,0:13:39.12:0,39,481 0/0:23,0:23:69.22:0,69,867 0/0:24,0:24:69.22:0,69,877 14 105707609 . G A 252.39 . 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C T 552.96 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.416;DP=2267;Dels=0.00;FS=8.090;HRun=0;HaplotypeScore=1.6859;InbreedingCoeff=-0.0120;MQ=59.15;MQ0=0;MQRankSum=4.002;QD=11.77;ReadPosRankSum=0.235 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,102,1234 0/0:34,0:34:96.26:0,96,1110 0/1:22,24:47:99:599,0,565 0/0:128,0:128:99:0,349,4445 0/0:100,0:100:99:0,271,3493 0/0:90,0:90:99:0,223,2846 0/0:70,0:71:99:0,184,2289 0/0:65,0:66:99:0,175,2180 0/0:26,0:26:75.21:0,75,886 0/0:28,0:28:69.17:0,69,796 0/0:35,0:35:90.22:0,90,1053 0/0:32,0:32:90.26:0,90,1090 0/0:32,0:32:84.20:0,84,965 0/0:36,1:37:99:0,102,1188 0/0:136,0:137:99:0,355,4293 0/0:50,0:50:99:0,147,1699 0/0:29,0:29:72.15:0,72,807 0/0:36,0:36:87.23:0,87,1044 0/0:69,0:69:99:0,181,2151 0/0:94,0:94:99:0,244,2930 0/0:59,0:59:99:0,159,1911 0/0:42,0:43:99:0,114,1378 0/0:125,0:125:99:0,340,4391 0/0:48,0:48:99:0,129,1640 0/0:77,0:78:99:0,211,2577 0/0:58,0:58:99:0,144,1824 0/0:36,0:36:96.24:0,96,1115 0/0:40,0:40:99:0,117,1349 0/0:28,0:28:66.19:0,66,787 0/0:35,0:35:96.27:0,96,1145 0/0:31,0:32:81.22:0,81,962 0/0:86,0:86:99:0,226,2679 0/0:54,0:54:99:0,144,1648 0/0:36,0:36:99:0,99,1122 0/0:40,0:40:99:0,111,1251 0/0:42,0:42:99:0,120,1427 0/0:57,0:57:99:0,135,1650 0/0:36,0:36:93.23:0,93,1062 0/0:44,0:44:99:0,123,1454 0/0:41,0:41:99:0,111,1313 0/0:29,1:30:54.12:0,54,984 0/0:36,1:37:68.79:0,69,1101 14 105930406 . G A 28493.56 . 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G A 57683.21 . 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G T 1198.07 . 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C T 6971.59 . AC=13;AF=0.155;AN=84;BaseQRankSum=-22.028;DP=1566;Dels=0.00;FS=2.374;HRun=0;HaplotypeScore=1.1307;InbreedingCoeff=-0.1832;MQ=58.13;MQ0=0;MQRankSum=1.612;QD=14.29;ReadPosRankSum=-0.837 GT:AD:DP:GQ:PL 0/1:12,12:24:99:284,0,384 0/1:15,21:36:99:575,0,405 0/0:22,0:22:54.17:0,54,692 0/0:54,0:54:99:0,157,2092 0/0:38,0:38:99:0,105,1419 0/0:44,0:44:99:0,120,1664 0/0:34,0:34:99:0,99,1334 0/0:54,0:54:99:0,150,2037 0/1:11,17:28:99:413,0,257 0/0:31,0:31:78.25:0,78,1017 0/1:18,8:26:99:207,0,495 0/0:27,0:27:66.22:0,66,879 0/1:9,19:28:99:470,0,233 0/0:30,0:30:81.26:0,81,1042 0/0:93,0:93:99:0,223,2880 0/1:15,23:38:99:609,0,467 0/0:33,0:33:87.28:0,87,1130 0/0:11,0:11:30.09:0,30,373 0/0:51,0:51:99:0,129,1646 0/0:69,0:69:99:0,181,2318 0/0:55,0:56:99:0,141,1805 0/1:12,25:37:99:702,0,353 0/1:46,40:86:99:1002,0,1501 0/1:28,21:50:99:552,0,887 0/1:25,32:57:99:902,0,747 0/0:41,0:41:99:0,108,1474 0/1:14,13:27:99:343,0,392 0/1:13,19:32:99:482,0,344 0/1:5,14:19:99:431,0,100 0/0:30,0:30:84.25:0,84,1051 0/0:20,0:20:57.18:0,57,728 0/0:55,0:55:99:0,141,1803 0/0:41,0:41:99:0,114,1460 0/0:16,0:16:42.13:0,42,538 0/0:42,0:42:99:0,102,1328 0/0:26,0:26:72.23:0,72,906 0/0:42,0:42:99:0,105,1373 0/0:31,0:31:78.24:0,78,990 0/0:20,0:20:51.16:0,51,658 0/0:23,1:24:24.06:0,24,690 0/0:20,0:20:48.16:0,48,637 0/0:23,0:23:69.22:0,69,889 14 106206469 . C G 163.67 . 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T G 22407.70 . AC=84;AF=1.000;AN=84;BaseQRankSum=2.205;DP=952;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.8187;InbreedingCoeff=-0.0053;MQ=32.73;MQ0=157;MQRankSum=0.089;QD=23.54;ReadPosRankSum=1.528 GT:AD:DP:GQ:PL 1/1:0,25:25:51.12:552,51,0 1/1:0,17:17:30.07:320,30,0 1/1:0,22:22:51.12:556,51,0 1/1:0,46:46:99:1122,102,0 1/1:0,45:45:99:1304,120,0 1/1:0,27:27:60.17:700,60,0 1/1:0,31:31:81.21:900,81,0 1/1:0,29:29:69.17:772,69,0 1/1:0,5:5:6.02:72,6,0 1/1:1,8:9:18.05:214,18,0 1/1:0,9:9:12.03:130,12,0 1/1:0,21:21:36.10:407,36,0 1/1:0,13:13:12.03:133,12,0 1/1:0,19:19:45.08:454,45,0 1/1:0,9:9:24.06:267,24,0 1/1:0,28:28:54.13:595,54,0 1/1:0,11:11:21.06:238,21,0 1/1:0,14:14:27.03:280,27,0 1/1:0,28:28:66.12:715,66,0 1/1:1,45:46:80.54:1049,81,0 1/1:2,41:43:72.19:812,72,0 1/1:0,16:16:33.07:343,33,0 1/1:0,53:53:99:1567,141,0 1/1:0,17:17:36.07:395,36,0 1/1:0,18:18:48.10:526,48,0 1/1:1,13:14:10.46:380,10,0 1/1:0,17:17:24.06:264,24,0 1/1:0,18:18:39.10:421,39,0 1/1:0,15:15:39.10:427,39,0 1/1:0,15:15:30.08:334,30,0 1/1:0,24:24:51.12:552,51,0 1/1:0,41:41:87.19:930,87,0 1/1:0,21:21:48.10:513,48,0 1/1:0,20:20:39.09:427,39,0 1/1:0,15:15:33.09:368,33,0 1/1:0,20:20:39.08:425,39,0 1/1:1,37:38:81.08:821,81,0 1/1:0,20:20:51.12:552,51,0 1/1:0,20:20:33.08:354,33,0 1/1:0,21:21:57.12:617,57,0 1/1:0,15:15:33.07:346,33,0 1/1:0,17:17:24.02:254,24,0 14 106237741 . A G 55.77 . AC=5;AF=0.060;AN=84;BaseQRankSum=6.173;DP=1427;Dels=0.00;FS=139.002;HRun=1;HaplotypeScore=0.7471;InbreedingCoeff=-0.0814;MQ=50.71;MQ0=38;MQRankSum=-14.180;QD=0.43;ReadPosRankSum=-2.311 GT:AD:DP:GQ:PL 0/0:14,2:16:5.65:0,6,386 0/0:34,1:35:81.26:0,81,1050 0/0:24,2:26:7.05:0,7,667 0/0:77,7:84:99:0,129,2401 0/0:65,6:71:95.76:0,96,2134 0/0:45,2:47:83.94:0,84,1474 0/0:42,3:45:99:0,111,1443 0/0:39,0:39:90.29:0,90,1209 0/0:6,1:7:15.05:0,15,197 0/1:3,1:4:21.40:21,0,99 0/0:11,0:11:27.09:0,27,340 0/0:22,1:23:38.50:0,38,702 0/0:18,1:19:45.13:0,45,551 0/0:27,1:28:78.23:0,78,949 0/0:31,5:36:60.19:0,60,800 0/0:31,2:33:20.36:0,20,889 0/0:25,2:27:16.89:0,17,782 0/0:28,1:29:41.79:0,42,866 0/0:48,1:49:99:0,111,1423 0/0:58,2:60:99:0,114,1796 0/0:54,0:55:99:0,117,1499 0/1:29,4:33:39.99:40,0,796 0/0:77,4:81:99:0,171,2459 0/0:36,1:37:66.59:0,67,1139 0/1:32,5:37:13.05:13,0,908 0/0:37,2:39:84.26:0,84,1090 0/0:17,2:20:45.14:0,45,572 0/0:27,2:30:35.78:0,36,788 0/0:21,2:23:54.17:0,54,671 0/1:27,5:32:46.49:46,0,823 0/0:27,1:28:44.75:0,45,848 0/0:50,2:52:99:0,102,1612 0/0:24,2:27:14.12:0,14,787 0/0:12,2:14:36.10:0,36,421 0/0:27,0:27:72.21:0,72,899 0/0:32,1:33:56.81:0,57,1050 0/0:49,6:55:77.66:0,78,1312 0/0:14,1:15:2.85:0,0,367 0/0:21,3:24:2.04:0,2,564 0/0:20,2:22:36.49:0,36,702 0/1:21,4:25:28.34:28,0,647 0/0:28,1:29:44.81:0,45,922 14 106357559 . A C 24.45 . AC=4;AF=0.049;AN=82;BaseQRankSum=-10.882;DP=1207;Dels=0.00;FS=530.101;HRun=2;HaplotypeScore=0.9415;InbreedingCoeff=-0.0709;MQ=58.83;MQ0=0;MQRankSum=-0.105;QD=0.22;ReadPosRankSum=-9.952 GT:AD:DP:GQ:PL 0/0:15,7:22:10.34:0,10,488 0/0:19,5:24:51.14:0,51,578 0/0:19,10:29:47.01:0,47,542 0/0:36,12:48:99:0,108,1218 0/0:25,15:40:74.58:0,75,850 0/0:24,15:39:9.88:0,10,772 0/0:22,7:29:66.20:0,66,789 0/0:20,9:29:54.16:0,54,630 0/0:4,3:7:9.02:0,9,106 0/0:2,1:3:6.02:0,6,66 ./. 0/0:19,10:29:26.57:0,27,589 0/0:14,6:20:42.11:0,42,473 0/1:17,11:28:39.44:39,0,502 0/0:9,2:11:24.07:0,24,276 0/0:24,10:34:41.75:0,42,768 0/0:18,8:26:54.13:0,54,596 0/1:10,8:18:20.37:20,0,291 0/0:35,15:50:18.51:0,19,1061 0/0:40,20:60:84.59:0,85,1249 0/0:26,13:39:20.90:0,21,736 0/0:23,19:42:39.71:0,40,766 0/0:22,16:38:66.18:0,66,761 0/1:21,11:32:18.53:19,0,674 0/0:28,10:38:79.83:0,80,870 0/0:23,10:33:35.77:0,36,736 0/0:16,10:26:46:0,46,509 0/0:14,9:23:13.46:0,13,409 0/0:14,4:18:39.12:0,39,455 0/0:16,8:24:19.43:0,19,457 0/0:19,9:28:1.27:5,0,573 0/0:24,15:40:61.02:0,61,668 0/0:23,12:35:66.19:0,66,752 0/0:23,10:34:67.43:0,67,764 0/0:14,5:19:12.63:0,13,462 0/0:16,15:31:14.70:0,15,483 0/1:21,11:32:29.71:30,0,599 0/0:15,8:23:45.13:0,45,513 0/0:21,6:27:60.17:0,60,688 0/0:14,16:30:13.09:0,13,433 0/0:22,8:30:27.66:0,28,644 0/0:10,9:19:27.85:0,28,287 14 106361515 . C T 1105.29 . AC=7;AF=0.088;AN=80;BaseQRankSum=1.491;DP=504;Dels=0.00;FS=2.039;HRun=0;HaplotypeScore=0.0960;InbreedingCoeff=0.1982;MQ=50.93;MQ0=0;MQRankSum=-0.503;QD=14.74;ReadPosRankSum=-1.283 GT:AD:DP:GQ:PL 0/0:16,0:16:45.13:0,45,519 0/0:17,0:17:51.12:0,51,570 0/0:17,0:17:51.12:0,51,573 0/0:6,0:6:15.04:0,15,182 0/0:12,0:12:27.09:0,27,348 0/0:9,0:9:27.08:0,27,328 0/0:7,0:7:18.06:0,18,237 0/0:5,0:5:15.04:0,15,171 0/0:4,0:4:12.03:0,12,136 ./. ./. 0/0:17,0:17:45.12:0,45,507 0/0:12,0:12:36.10:0,36,422 0/0:14,0:14:42.11:0,42,479 0/0:2,0:2:6.02:0,6,69 0/0:15,0:15:45.13:0,45,524 0/0:12,0:12:36.10:0,36,403 0/0:14,0:14:39.11:0,39,457 0/0:18,0:18:54.15:0,54,611 0/1:12,8:20:99:197,0,297 0/0:28,0:28:81.17:0,81,889 0/0:10,0:10:30.08:0,30,333 0/0:16,0:16:42.13:0,42,515 0/0:9,0:9:27.08:0,27,318 0/0:11,0:11:33.09:0,33,390 0/1:4,2:6:53.64:54,0,102 0/0:8,0:8:24.06:0,24,267 0/0:11,0:11:33.08:0,33,360 0/0:12,0:12:36.08:0,36,398 0/1:5,6:11:99:170,0,135 0/1:3,5:8:64.48:144,0,64 0/0:20,0:20:54.12:0,54,602 0/0:16,0:16:48.13:0,48,541 0/0:13,0:13:39.10:0,39,439 0/0:11,0:11:30.09:0,30,357 0/0:17,0:17:45.12:0,45,514 0/1:7,10:17:99:235,0,184 1/1:0,13:13:36.10:423,36,0 0/0:16,0:16:48.09:0,48,521 0/0:8,0:8:24.06:0,24,262 0/0:11,0:11:33.09:0,33,380 0/0:15,0:15:45.10:0,45,489 14 106367007 . C T 9.17 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.515;DP=831;Dels=0.00;FS=1.872;HRun=1;HaplotypeScore=0.5223;InbreedingCoeff=-0.0228;MQ=59.03;MQ0=0;MQRankSum=-3.427;QD=0.33;ReadPosRankSum=-0.867 GT:AD:DP:GQ:PL 0/0:24,0:24:66.20:0,66,827 0/0:21,0:21:63.20:0,63,788 0/0:11,0:11:30.09:0,30,359 0/0:26,0:26:60.19:0,60,805 0/0:19,0:19:51.16:0,51,675 0/0:16,0:16:45.14:0,45,597 0/0:23,0:23:66.22:0,66,892 0/0:14,0:14:39.13:0,39,530 0/0:3,0:3:9.03:0,9,115 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,39 0/0:14,0:14:42.13:0,42,524 0/0:24,0:24:66.21:0,66,843 0/0:18,0:18:54.17:0,54,669 0/0:4,0:4:9.03:0,9,111 0/0:29,0:29:81.26:0,81,1024 0/0:17,0:17:51.15:0,51,622 0/0:19,0:19:54.17:0,54,687 0/0:32,0:32:87.26:0,87,1060 0/0:39,0:39:87.28:0,87,1147 0/0:35,0:36:96.30:0,96,1199 0/0:31,0:31:84.27:0,84,1068 0/1:24,4:28:54.69:55,0,771 0/0:15,0:15:39.12:0,39,499 0/0:16,0:16:42.14:0,42,577 0/0:15,0:15:42.14:0,42,570 0/0:18,0:18:51.16:0,51,659 0/0:18,0:18:51.15:0,51,626 0/0:23,0:23:63.20:0,63,786 0/0:27,0:27:75.23:0,75,935 0/0:15,0:15:39.13:0,39,511 0/0:29,0:29:78.25:0,78,1009 0/0:23,0:23:63.20:0,63,799 0/0:16,0:16:45.13:0,45,543 0/0:16,0:16:45.14:0,45,579 0/0:21,0:22:57.18:0,57,726 0/0:40,0:40:99:0,102,1321 0/0:21,0:21:57.17:0,57,708 0/0:11,0:11:30.10:0,30,377 0/0:16,0:16:45.14:0,45,566 0/0:15,0:15:42.13:0,42,519 0/0:25,0:25:60.19:0,60,787 14 106367018 . C T 75.12 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.300;DP=902;Dels=0.00;FS=1.564;HRun=0;HaplotypeScore=0.5150;InbreedingCoeff=-0.0189;MQ=58.96;MQ0=0;MQRankSum=-4.147;QD=2.42;ReadPosRankSum=-1.824 GT:AD:DP:GQ:PL 0/0:29,0:29:87.24:0,87,1033 0/0:25,0:25:75.20:0,75,896 0/0:10,0:10:30.09:0,30,362 0/0:25,0:25:63.20:0,63,838 0/0:20,0:20:54.17:0,54,703 0/0:18,0:18:48.15:0,48,633 0/0:22,0:23:60.19:0,60,787 0/0:16,0:16:42.14:0,42,560 0/0:6,0:6:18.06:0,18,223 0/0:1,0:1:3.01:0,3,34 0/0:2,0:2:6.02:0,6,74 0/0:20,0:20:60.18:0,60,732 0/0:22,0:22:63.15:0,63,740 0/0:22,0:22:51.16:0,51,630 0/0:5,0:5:15.02:0,15,162 0/0:35,0:35:87.26:0,87,1067 0/0:19,0:19:54.14:0,54,619 0/0:25,0:25:66.19:0,66,799 0/0:38,0:41:99:0,102,1210 0/0:34,0:34:84.25:0,84,1036 0/0:34,0:35:99:0,99,1185 0/0:32,0:32:84.22:0,84,997 0/1:24,6:31:99:121,0,717 0/0:19,0:19:45.15:0,45,595 0/0:19,0:19:48.15:0,48,619 0/0:14,0:14:33.08:0,33,417 0/0:18,0:18:51.15:0,51,600 0/0:19,0:19:57.17:0,57,689 0/0:23,0:23:63.19:0,63,771 0/0:24,0:25:66.20:0,66,798 0/0:18,0:18:48.11:0,48,572 0/0:35,0:35:90.26:0,90,1109 0/0:29,0:29:75.24:0,75,954 0/0:17,0:17:48.10:0,48,535 0/0:16,0:16:45.14:0,45,561 0/0:24,0:24:63.19:0,63,766 0/0:41,0:41:99:0,105,1250 0/0:22,0:22:60.18:0,60,726 0/0:12,0:12:30.09:0,30,365 0/0:18,0:18:51.16:0,51,630 0/0:16,0:16:39.11:0,39,474 0/0:21,0:21:57.17:0,57,702 14 106368526 . C T 270.58 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.461;DP=1957;Dels=0.00;FS=3.379;HRun=1;HaplotypeScore=1.4630;InbreedingCoeff=-0.0433;MQ=54.12;MQ0=4;MQRankSum=-9.874;QD=2.55;ReadPosRankSum=0.885 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,144,1807 0/0:44,0:44:99:0,111,1363 0/0:35,0:35:90.26:0,90,1124 0/0:55,0:55:99:0,135,1731 0/0:45,0:45:99:0,117,1523 0/0:45,0:45:99:0,111,1425 0/0:39,0:39:93.27:0,93,1202 0/0:35,0:35:99:0,99,1278 0/0:7,0:8:21.05:0,21,258 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,78 0/0:32,0:32:78.24:0,78,989 0/0:61,0:61:99:0,165,2007 0/0:46,0:46:99:0,123,1490 0/0:24,0:24:63.19:0,63,787 0/0:46,0:46:99:0,132,1593 0/0:43,0:44:99:0,117,1455 0/0:49,0:49:99:0,141,1699 0/0:72,0:72:99:0,202,2484 0/0:107,7:114:99:0,145,3236 0/0:60,0:60:99:0,150,1776 0/0:67,0:67:99:0,172,2126 0/1:33,18:51:99:242,0,897 0/0:27,0:27:81.24:0,81,1030 0/0:45,0:45:99:0,108,1405 0/0:24,3:27:0.52:9,0,750 0/0:45,0:45:99:0,120,1439 0/0:51,0:51:99:0,147,1758 0/0:42,0:42:99:0,120,1437 0/1:47,8:55:88.94:89,0,1404 0/0:62,2:64:99:0,102,1934 0/0:100,0:100:99:0,265,3323 0/0:58,0:58:99:0,156,1909 0/0:33,0:33:90.28:0,90,1124 0/0:48,0:48:99:0,129,1557 0/0:43,0:43:99:0,117,1469 0/0:75,5:80:60.37:0,60,2344 0/0:37,4:41:12.08:0,12,1127 0/0:38,0:38:99:0,111,1343 0/0:39,0:39:99:0,99,1200 0/0:44,0:44:99:0,120,1477 0/0:46,0:46:99:0,105,1331 14 106370370 . C T 599.96 . AC=5;AF=0.061;AN=82;BaseQRankSum=0.704;DP=410;Dels=0.00;FS=2.714;HRun=0;HaplotypeScore=0.2525;InbreedingCoeff=-0.0782;MQ=57.99;MQ0=0;MQRankSum=2.545;QD=9.37;ReadPosRankSum=-0.829 GT:AD:DP:GQ:PL 0/0:11,0:11:30.08:0,30,340 0/0:12,0:12:33.07:0,33,362 0/0:5,0:5:15.04:0,15,174 0/0:5,0:5:12.04:0,12,148 0/1:8,1:9:9.36:9,0,252 0/0:5,0:5:15.05:0,15,188 0/0:2,0:2:6.02:0,6,82 0/0:6,0:6:15.04:0,15,188 0/0:3,0:3:9.03:0,9,104 ./. 0/0:1,0:1:3.01:0,3,32 0/0:8,0:8:24.07:0,24,288 0/0:15,0:15:36.09:0,36,415 0/0:12,0:12:36.10:0,36,413 0/0:4,0:4:12.01:0,12,123 0/0:7,0:7:21.06:0,21,240 0/0:11,0:11:27.06:0,27,305 0/0:8,0:8:21.03:0,21,230 0/0:22,0:22:60.17:0,60,703 0/1:7,8:15:99:232,0,211 0/0:15,0:15:42.10:0,42,483 0/0:14,0:14:36.10:0,36,425 0/0:6,0:6:15.04:0,15,167 0/0:8,0:8:24.07:0,24,284 0/0:7,0:7:21.06:0,21,252 0/0:4,0:4:12.04:0,12,146 0/0:16,0:16:48.14:0,48,570 0/0:15,0:15:33.10:0,33,419 0/0:8,0:8:21.06:0,21,252 0/1:9,5:14:99:135,0,208 0/1:7,3:11:79.94:80,0,228 0/0:20,0:20:60.15:0,60,686 0/0:12,0:12:36.09:0,36,401 0/0:9,0:9:21.06:0,21,252 0/0:4,0:4:12.03:0,12,126 0/0:11,0:11:30.08:0,30,338 0/0:18,0:18:45.13:0,45,546 0/1:6,9:15:99:236,0,167 0/0:10,0:10:27.08:0,27,309 0/0:12,0:12:36.08:0,36,404 0/0:10,0:10:30.08:0,30,357 0/0:10,0:10:30.05:0,30,324 14 106373078 . T A 70.59 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.129;DP=1684;Dels=0.00;FS=4.991;HRun=1;HaplotypeScore=1.0142;InbreedingCoeff=-0.0152;MQ=58.02;MQ0=1;MQRankSum=-3.180;QD=7.84;ReadPosRankSum=-2.438 GT:AD:DP:GQ:PL 0/0:23,0:23:69.21:0,69,820 0/0:19,0:19:54.12:0,54,627 0/0:50,0:50:99:0,138,1638 0/0:53,0:53:99:0,144,1671 0/0:61,0:61:99:0,175,2084 0/0:23,0:23:60.19:0,60,762 0/0:32,1:33:81.21:0,81,979 0/0:21,0:21:48.14:0,48,585 0/0:10,0:10:30.06:0,30,332 0/0:2,0:2:6.02:0,6,70 0/1:5,4:9:99:117,0,122 0/0:56,0:56:99:0,162,1894 0/0:54,0:54:99:0,153,1782 0/0:42,0:42:99:0,114,1344 0/0:5,0:5:12.03:0,12,129 0/0:56,0:56:99:0,159,1843 0/0:27,0:27:75.20:0,75,872 0/0:48,0:48:99:0,126,1515 0/0:34,0:34:93.26:0,93,1101 0/0:46,0:46:99:0,126,1510 0/0:44,0:44:99:0,123,1470 0/0:41,0:41:99:0,111,1304 0/0:37,0:37:99:0,102,1224 0/0:52,0:53:99:0,132,1602 0/0:69,0:69:99:0,175,2138 0/0:30,0:30:78.24:0,78,956 0/0:31,0:31:84.25:0,84,1017 0/0:49,0:49:99:0,135,1604 0/0:32,0:32:93.26:0,93,1075 0/0:51,0:51:99:0,138,1634 0/0:35,0:35:96.24:0,96,1090 0/0:109,0:109:99:0,304,3575 0/0:59,0:59:99:0,162,1906 0/0:47,0:47:99:0,132,1560 0/0:35,0:35:99:0,99,1141 0/0:41,0:41:99:0,102,1248 0/0:77,0:77:99:0,214,2544 0/0:37,0:37:99:0,105,1248 0/0:22,0:22:63.15:0,63,714 0/0:36,0:36:99:0,105,1197 0/0:38,0:38:99:0,105,1247 0/0:39,0:39:99:0,111,1288 14 106373085 . T C 2501.20 . AC=5;AF=0.060;AN=84;BaseQRankSum=0.988;DP=1550;Dels=0.00;FS=25.532;HRun=0;HaplotypeScore=0.8709;InbreedingCoeff=0.3454;MQ=58.11;MQ0=1;MQRankSum=1.038;QD=16.79;ReadPosRankSum=1.019 GT:AD:DP:GQ:PL 0/0:20,0:20:60.18:0,60,716 0/0:17,0:17:48.14:0,48,577 0/0:48,0:48:99:0,138,1643 0/0:50,0:50:99:0,147,1802 0/0:56,0:56:99:0,156,1939 0/0:24,0:24:63.20:0,63,811 0/0:31,0:31:84.25:0,84,1059 0/0:18,0:18:48.15:0,48,599 0/0:7,0:7:21.06:0,21,247 0/0:3,0:3:9.03:0,9,106 0/0:9,0:9:24.05:0,24,276 0/0:45,0:45:99:0,126,1490 0/0:49,0:49:99:0,141,1701 0/0:39,0:39:99:0,108,1312 0/0:4,0:4:12.04:0,12,147 0/0:53,0:53:99:0,159,1906 0/0:24,0:24:69.20:0,69,823 0/0:45,0:45:99:0,123,1531 0/0:33,0:33:90.28:0,90,1112 1/1:3,37:40:33.40:1211,33,0 0/0:39,0:39:99:0,111,1360 0/0:40,0:40:99:0,111,1326 0/0:36,0:36:96.30:0,96,1195 0/0:50,0:50:99:0,129,1637 0/0:62,0:62:99:0,163,2063 0/0:28,0:28:78.25:0,78,986 0/0:27,0:27:69.21:0,69,852 0/0:39,0:39:99:0,105,1283 0/0:24,0:24:66.20:0,66,806 0/1:27,16:43:99:460,0,828 0/1:13,16:30:99:470,0,377 0/0:101,0:101:99:0,283,3434 0/0:60,0:60:99:0,169,2036 0/0:47,0:47:99:0,135,1628 0/0:37,0:37:99:0,108,1286 0/0:37,0:37:99:0,99,1211 0/0:75,0:75:99:0,205,2502 0/1:17,19:36:99:463,0,519 0/0:18,0:18:51.16:0,51,625 0/0:36,0:36:99:0,108,1292 0/0:34,0:34:90.27:0,90,1096 0/0:36,0:36:99:0,99,1202 14 106373086 . T C 2492.35 . AC=5;AF=0.060;AN=84;BaseQRankSum=6.142;DP=1510;Dels=0.00;FS=23.703;HRun=0;HaplotypeScore=0.8605;InbreedingCoeff=0.3448;MQ=58.16;MQ0=1;MQRankSum=3.213;QD=17.07;ReadPosRankSum=1.007 GT:AD:DP:GQ:PL 0/0:21,0:21:57.17:0,57,682 0/0:16,0:16:45.13:0,45,541 0/0:45,0:45:99:0,132,1554 0/0:49,0:49:99:0,144,1680 0/0:52,0:52:99:0,144,1775 0/0:24,0:24:63.20:0,63,787 0/0:31,0:31:84.24:0,84,1036 0/0:17,0:17:45.13:0,45,543 0/0:7,0:7:18.05:0,18,213 0/0:3,0:3:9.03:0,9,108 0/0:9,0:9:24.07:0,24,287 0/0:43,0:43:99:0,123,1456 0/0:48,0:48:99:0,132,1565 0/0:39,0:39:99:0,105,1239 0/0:4,0:4:12.04:0,12,144 0/0:51,0:51:99:0,153,1810 0/0:25,0:25:72.21:0,72,848 0/0:44,0:44:99:0,123,1485 0/0:33,0:33:87.26:0,87,1052 1/1:3,36:39:33.14:1234,33,0 0/0:40,0:40:99:0,111,1349 0/0:40,0:40:99:0,114,1341 0/0:36,0:36:96.29:0,96,1168 0/0:48,0:48:99:0,129,1571 0/0:57,0:57:99:0,150,1853 0/0:27,0:27:78.23:0,78,935 0/0:25,0:25:69.21:0,69,839 0/0:37,0:37:99:0,105,1259 0/0:22,0:22:66.19:0,66,770 0/1:27,16:43:99:388,0,777 0/1:13,17:30:99:451,0,374 0/0:98,0:98:99:0,274,3302 0/0:60,0:60:99:0,165,1956 0/0:46,0:46:99:0,132,1572 0/0:37,0:37:99:0,111,1295 0/0:36,0:36:99:0,99,1162 0/0:75,0:75:99:0,205,2479 0/1:16,18:34:99:522,0,470 0/0:17,0:17:45.13:0,45,534 0/0:35,0:35:99:0,105,1248 0/0:30,0:31:81.25:0,81,974 0/0:36,0:36:96.29:0,96,1157 14 106373087 . A T 36.67 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.234;DP=1487;Dels=0.00;FS=2.289;HRun=2;HaplotypeScore=0.8367;InbreedingCoeff=-0.0142;MQ=58.19;MQ0=1;MQRankSum=-3.219;QD=4.07;ReadPosRankSum=-0.296 GT:AD:DP:GQ:PL 0/0:19,0:19:54.15:0,54,633 0/0:17,0:17:48.14:0,48,583 0/0:43,0:43:99:0,123,1474 0/0:48,0:48:99:0,141,1694 0/0:50,0:50:99:0,141,1708 0/0:23,0:23:60.19:0,60,753 0/0:31,0:31:81.25:0,81,1018 0/0:16,0:16:42.12:0,42,518 0/0:7,0:7:21.06:0,21,247 0/0:3,0:3:9.03:0,9,106 0/1:5,4:9:82.85:83,0,128 0/0:42,0:42:99:0,123,1484 0/0:46,0:46:99:0,132,1599 0/0:42,0:42:99:0,114,1352 0/0:4,0:4:12.04:0,12,146 0/0:48,0:48:99:0,144,1718 0/0:25,0:25:69.22:0,69,856 0/0:43,0:43:99:0,120,1473 0/0:31,0:31:87.26:0,87,1053 0/0:37,0:38:99:0,99,1225 0/0:42,0:42:99:0,114,1378 0/0:40,0:40:99:0,108,1301 0/0:35,0:35:93.28:0,93,1130 0/0:50,0:50:99:0,135,1665 0/0:57,0:57:99:0,150,1901 0/0:26,0:26:75.22:0,75,924 0/0:24,0:24:66.20:0,66,804 0/0:37,0:37:99:0,102,1238 0/0:22,0:22:63.18:0,63,751 0/0:42,0:42:99:0,120,1459 0/0:30,0:30:81.25:0,81,983 0/0:98,0:98:99:0,274,3316 0/0:57,0:57:99:0,156,1847 0/0:45,0:45:99:0,129,1562 0/0:35,0:35:99:0,105,1220 0/0:33,0:33:90.27:0,90,1096 0/0:77,0:77:99:0,205,2480 0/0:33,0:33:96.28:0,96,1146 0/0:17,0:17:45.14:0,45,550 0/0:36,0:36:99:0,102,1218 0/0:31,0:31:84.25:0,84,1012 0/0:35,0:35:96.28:0,96,1154 14 106373089 . T G 94.37 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.801;DP=1448;Dels=0.00;FS=1.801;HRun=1;HaplotypeScore=0.7728;InbreedingCoeff=-0.0142;MQ=58.17;MQ0=1;MQRankSum=-2.235;QD=9.44;ReadPosRankSum=-0.397 GT:AD:DP:GQ:PL 0/0:18,0:18:51.14:0,51,587 0/0:16,0:16:45.13:0,45,529 0/0:42,0:42:99:0,120,1366 0/0:48,0:48:99:0,141,1593 0/0:51,0:51:99:0,144,1697 0/0:22,0:22:57.13:0,57,667 0/0:28,0:28:75.21:0,75,902 0/0:16,0:16:42.09:0,42,483 0/0:8,0:8:24.06:0,24,260 0/0:3,0:3:9.03:0,9,103 0/1:5,5:10:99:141,0,110 0/0:41,0:41:99:0,120,1387 0/0:43,0:43:99:0,123,1429 0/0:43,0:43:99:0,117,1370 0/0:4,0:4:12.03:0,12,137 0/0:48,0:48:99:0,141,1619 0/0:25,0:25:72.19:0,72,831 0/0:43,0:43:99:0,123,1449 0/0:31,0:31:84.22:0,84,975 0/0:34,0:34:96.27:0,96,1132 0/0:40,0:40:99:0,111,1325 0/0:38,0:38:99:0,111,1253 0/0:35,0:35:93.27:0,93,1094 0/0:47,0:47:99:0,126,1493 0/0:55,0:55:99:0,150,1744 0/0:27,0:27:75.20:0,75,878 0/0:24,0:24:69.20:0,69,804 0/0:36,0:37:99:0,99,1152 0/0:21,0:21:63.17:0,63,731 0/0:42,0:42:99:0,120,1394 0/0:27,0:27:75.21:0,75,860 0/0:92,0:95:99:0,259,3008 0/0:53,0:53:99:0,153,1764 0/0:45,0:45:99:0,126,1480 0/0:34,0:34:99:0,99,1121 0/0:31,0:31:87.21:0,87,990 0/0:77,1:78:99:0,208,2440 0/0:32,0:32:93.26:0,93,1084 0/0:17,0:17:48.14:0,48,565 0/0:33,0:33:99:0,99,1120 0/0:31,0:31:81.24:0,81,947 0/0:32,0:32:87.25:0,87,1019 14 106382687 . C T 33764.18 . AC=45;AF=0.536;AN=84;BaseQRankSum=-29.423;DP=2447;Dels=0.00;FS=16.467;HRun=0;HaplotypeScore=2.0061;InbreedingCoeff=0.0909;MQ=57.45;MQ0=2;MQRankSum=1.552;QD=19.11;ReadPosRankSum=-0.807 GT:AD:DP:GQ:PL 0/1:23,23:47:99:561,0,630 0/0:39,0:39:99:0,108,1335 0/1:27,23:50:99:557,0,783 0/1:66,38:105:99:925,0,1999 1/1:1,67:68:99:2076,183,0 0/1:31,33:66:99:814,0,902 0/1:35,43:79:99:962,0,1055 0/1:39,30:69:99:786,0,1282 1/1:0,20:22:60.16:674,60,0 0/1:1,1:2:22.63:23,0,33 0/1:4,15:20:95.67:415,0,96 1/1:0,44:45:99:1364,117,0 0/1:21,19:40:99:552,0,595 1/1:0,51:52:99:1610,141,0 0/1:3,11:15:64.07:263,0,64 1/1:0,57:58:99:1718,153,0 0/0:62,0:63:99:0,153,1916 1/1:0,52:54:99:1628,147,0 0/1:44,35:79:99:821,0,1311 0/0:140,0:140:99:0,358,4504 0/1:52,56:110:99:1386,0,1424 0/0:55,0:55:99:0,138,1741 0/0:84,0:84:99:0,232,2983 0/0:68,0:68:99:0,172,2302 0/0:84,1:85:99:0,190,2921 0/1:23,30:54:99:788,0,616 1/1:1,36:37:99:1222,105,0 1/1:0,48:48:99:1501,135,0 1/1:0,47:48:99:1461,126,0 0/1:20,16:36:99:413,0,494 0/1:25,28:54:99:702,0,686 1/1:0,110:112:99:3319,283,0 0/1:38,33:71:99:767,0,1091 0/0:58,0:59:99:0,166,2086 0/0:39,1:40:70.08:0,70,1279 0/1:22,31:53:99:766,0,672 0/1:43,37:80:99:869,0,1171 0/1:28,26:55:99:698,0,828 0/0:47,0:47:99:0,126,1567 1/1:0,43:43:99:1359,120,0 1/1:2,38:40:33.92:1077,34,0 1/1:0,55:55:99:1686,147,0 14 106382697 . G A 469.53 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.472;DP=2191;Dels=0.00;FS=11.106;HRun=0;HaplotypeScore=2.5120;InbreedingCoeff=-0.0121;MQ=57.57;MQ0=1;MQRankSum=-4.632;QD=5.94;ReadPosRankSum=2.820 GT:AD:DP:GQ:PL 0/0:43,0:44:99:0,123,1518 0/0:35,0:35:99:0,102,1248 0/0:43,0:44:99:0,123,1537 0/0:90,0:90:99:0,256,3364 0/0:57,0:57:99:0,169,2226 0/0:59,0:59:99:0,169,2241 0/0:61,0:61:99:0,169,2186 0/0:67,0:67:99:0,187,2499 0/0:20,0:20:54.16:0,54,661 0/0:8,0:8:24.07:0,24,273 0/0:18,0:18:54.17:0,54,668 0/0:41,0:41:99:0,114,1442 0/0:46,0:46:99:0,135,1678 0/0:48,0:48:99:0,138,1730 0/0:20,0:20:60.19:0,60,746 0/0:47,0:47:99:0,135,1683 0/0:52,0:52:99:0,144,1783 0/0:48,0:48:99:0,138,1702 0/0:71,0:72:99:0,193,2391 0/0:120,0:121:99:0,328,4173 0/0:94,0:94:99:0,265,3347 0/0:58,1:59:99:0,159,2007 0/1:56,23:79:99:516,0,1841 0/0:61,0:61:99:0,166,2235 0/0:65,0:65:99:0,181,2420 0/0:59,0:59:99:0,157,2067 0/0:34,0:34:99:0,102,1267 0/0:44,0:44:99:0,126,1572 0/0:49,0:49:99:0,135,1715 0/0:31,0:31:84.26:0,84,1040 0/0:44,0:44:99:0,126,1588 0/0:97,0:97:99:0,265,3362 0/0:63,0:63:99:0,175,2194 0/0:50,0:50:99:0,150,1898 0/0:37,0:37:99:0,105,1324 0/0:41,0:41:99:0,117,1479 0/0:71,0:71:99:0,202,2476 0/0:48,0:48:99:0,141,1762 0/0:48,0:48:99:0,141,1766 0/0:39,0:39:99:0,111,1399 0/0:32,0:32:90.27:0,90,1108 0/0:48,0:48:99:0,144,1776 14 106382701 . C G 200.06 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.025;DP=2009;Dels=0.00;FS=21.132;HRun=0;HaplotypeScore=2.1329;InbreedingCoeff=0.0954;MQ=57.62;MQ0=2;MQRankSum=-3.641;QD=22.23;ReadPosRankSum=-1.886 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,111,1334 0/0:32,0:32:93.26:0,93,1115 0/0:41,0:41:99:0,123,1494 0/0:77,0:77:99:0,223,2867 0/0:48,0:48:99:0,141,1806 0/0:59,0:59:99:0,165,2135 0/0:51,0:51:99:0,141,1841 0/0:58,0:58:99:0,168,2185 0/0:19,0:19:51.13:0,51,583 0/1:1,8:9:12.24:246,0,12 0/0:19,0:19:57.10:0,57,650 0/0:31,0:31:87.25:0,87,1078 0/0:42,0:42:99:0,123,1509 0/0:45,0:45:99:0,126,1537 0/0:20,0:20:54.15:0,54,632 0/0:44,0:44:99:0,120,1453 0/0:47,0:47:99:0,138,1667 0/0:49,0:50:99:0,138,1665 0/0:61,0:61:99:0,178,2153 0/0:112,0:113:99:0,298,3680 0/0:86,0:87:99:0,232,2854 0/0:58,0:59:99:0,159,1964 0/0:78,0:78:99:0,211,2682 0/0:57,0:57:99:0,153,2021 0/0:57,0:57:99:0,156,2063 0/0:48,0:48:99:0,138,1695 0/0:35,0:35:99:0,102,1243 0/0:38,0:38:99:0,111,1337 0/0:47,0:47:99:0,126,1562 0/0:27,0:27:81.24:0,81,970 0/0:43,0:43:99:0,120,1441 0/0:89,0:89:99:0,250,3021 0/0:55,0:55:99:0,162,1954 0/0:45,0:45:99:0,129,1584 0/0:34,0:34:96.29:0,96,1178 0/0:37,0:37:99:0,102,1246 0/0:63,0:64:99:0,168,2013 0/0:49,0:49:99:0,141,1698 0/0:48,0:48:99:0,144,1708 0/0:34,0:34:99:0,99,1213 0/0:29,0:29:87.26:0,87,1052 0/0:46,0:46:99:0,129,1557 14 106382704 . C T 217.70 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.291;DP=1968;Dels=0.00;FS=13.935;HRun=1;HaplotypeScore=1.7124;InbreedingCoeff=-0.0118;MQ=57.59;MQ0=2;MQRankSum=-4.235;QD=19.79;ReadPosRankSum=-1.201 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,108,1291 0/0:33,0:33:93.28:0,93,1136 0/0:42,0:42:99:0,123,1495 0/0:73,0:73:99:0,211,2719 0/0:49,0:49:99:0,135,1698 0/0:60,0:60:99:0,168,2156 0/0:50,0:50:99:0,138,1786 0/0:57,0:57:99:0,166,2136 0/0:17,0:18:42.12:0,42,510 0/1:2,9:11:39.96:264,0,40 0/0:19,0:19:54.13:0,54,633 0/0:32,0:32:87.24:0,87,1052 0/0:40,0:40:99:0,117,1432 0/0:44,0:45:99:0,126,1560 0/0:20,0:20:54.15:0,54,652 0/0:43,0:43:99:0,123,1480 0/0:43,0:43:99:0,126,1542 0/0:49,0:49:99:0,132,1602 0/0:62,0:62:99:0,181,2161 0/0:110,0:110:99:0,292,3643 0/0:82,0:83:99:0,229,2748 0/0:58,0:58:99:0,159,1982 0/0:78,0:78:99:0,220,2794 0/0:53,0:53:99:0,144,1901 0/0:57,0:57:99:0,156,2018 0/0:46,0:46:99:0,129,1606 0/0:32,0:32:96.30:0,96,1191 0/0:36,0:36:99:0,102,1247 0/0:40,0:40:99:0,114,1373 0/0:27,0:27:81.24:0,81,964 0/0:42,0:42:99:0,108,1306 0/0:86,0:86:99:0,238,2917 0/0:54,0:54:99:0,159,1898 0/0:44,0:44:99:0,132,1619 0/0:35,0:35:96.30:0,96,1193 0/0:35,0:35:99:0,105,1263 0/0:67,0:67:99:0,187,2232 0/0:45,0:46:99:0,126,1509 0/0:48,0:48:99:0,141,1663 0/0:34,0:34:99:0,99,1201 0/0:27,0:27:81.22:0,81,959 0/0:47,0:47:99:0,135,1638 14 107078790 . C T 145207.56 . AC=79;AF=0.940;AN=84;BaseQRankSum=-7.115;DP=4809;DS;Dels=0.00;FS=0.484;HRun=0;HaplotypeScore=2.5709;InbreedingCoeff=-0.0633;MQ=59.37;MQ0=0;MQRankSum=-0.343;QD=30.19;ReadPosRankSum=1.013 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2986,253,0 0/1:46,75:121:99:1964,0,1145 0/1:57,35:92:99:901,0,1495 1/1:0,154:154:99:4746,382,0 1/1:1,95:96:99:3115,259,0 1/1:1,106:108:99:3509,277,0 1/1:0,99:99:99:3098,250,0 1/1:0,113:114:99:3457,277,0 1/1:0,103:103:99:3245,274,0 1/1:0,85:85:99:2761,232,0 1/1:0,76:76:99:2570,211,0 1/1:0,99:99:99:3257,271,0 0/1:40,47:87:99:1267,0,1103 1/1:0,95:95:99:3129,262,0 1/1:0,236:237:99:7275,611,0 1/1:0,86:86:99:2913,241,0 1/1:0,118:118:99:3808,316,0 1/1:1,102:103:99:3329,249,0 1/1:0,172:174:99:5767,475,0 1/1:0,192:193:99:5915,481,0 1/1:0,178:178:99:5652,469,0 1/1:0,98:98:99:3158,262,0 1/1:0,147:147:99:4695,376,0 1/1:0,97:97:99:3115,250,0 1/1:0,83:83:99:2747,226,0 1/1:0,106:106:99:3305,268,0 1/1:2,70:72:99:2340,196,0 1/1:1,98:100:99:3233,268,0 1/1:0,94:94:99:3143,262,0 1/1:0,99:100:99:3185,262,0 1/1:0,101:101:99:3452,286,0 1/1:1,195:196:99:6265,517,0 1/1:0,97:97:99:3115,262,0 1/1:0,90:90:99:3021,250,0 0/1:60,36:96:99:982,0,1734 1/1:0,122:122:99:3843,310,0 1/1:0,190:190:99:6210,514,0 1/1:0,113:113:99:3676,304,0 1/1:0,116:116:99:3848,325,0 1/1:0,103:103:99:3514,295,0 1/1:0,81:81:99:2649,226,0 0/1:57,40:97:99:1046,0,1665 14 107179243 . G A 497.29 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.804;DP=2446;Dels=0.00;FS=1.782;HRun=0;HaplotypeScore=1.3588;InbreedingCoeff=-0.0244;MQ=58.41;MQ0=0;MQRankSum=0.145;QD=6.54;ReadPosRankSum=1.267 GT:AD:DP:GQ:PL 0/0:31,0:31:84.24:0,84,994 0/0:33,0:33:84.24:0,84,1006 0/1:24,16:40:99:445,0,602 0/0:70,0:70:99:0,178,2288 0/0:52,0:52:99:0,141,1804 0/0:43,0:43:99:0,105,1350 0/1:30,6:36:99:115,0,983 0/0:52,0:52:99:0,129,1718 0/0:33,0:33:84.23:0,84,1014 0/0:49,0:49:99:0,129,1499 0/0:44,0:44:99:0,105,1310 0/0:49,0:49:99:0,132,1548 0/0:50,0:50:99:0,120,1502 0/0:32,0:32:87.24:0,87,1018 0/0:161,0:161:99:0,394,4808 0/0:66,0:66:99:0,177,2083 0/0:40,0:41:99:0,111,1314 0/0:53,0:53:99:0,132,1592 0/0:123,0:123:99:0,310,3701 0/0:90,0:90:99:0,223,2689 0/0:85,0:85:99:0,211,2513 0/0:49,0:49:99:0,129,1566 0/0:71,0:71:99:0,187,2389 0/0:30,0:30:75.24:0,75,976 0/0:37,0:37:93.29:0,93,1224 0/0:38,0:38:90.26:0,90,1166 0/0:42,0:42:99:0,105,1250 0/0:70,0:70:99:0,174,2102 0/0:33,0:33:93.24:0,93,1091 0/0:75,0:75:99:0,202,2353 0/0:74,0:74:99:0,199,2364 0/0:82,0:82:99:0,187,2285 0/0:72,0:72:99:0,190,2276 0/0:46,0:46:99:0,126,1502 0/0:48,0:48:99:0,129,1533 0/0:65,0:65:99:0,178,2096 0/0:121,0:122:99:0,313,3718 0/0:56,0:56:99:0,144,1742 0/0:50,0:50:99:0,129,1504 0/0:58,0:58:99:0,153,1812 0/0:49,0:49:99:0,129,1576 0/0:46,0:46:99:0,123,1477 14 107179254 . T C 530.01 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.680;DP=2256;Dels=0.00;FS=3.066;HRun=0;HaplotypeScore=1.4970;InbreedingCoeff=-0.0244;MQ=58.45;MQ0=0;MQRankSum=-0.984;QD=7.36;ReadPosRankSum=0.631 GT:AD:DP:GQ:PL 0/0:25,0:25:72.19:0,72,830 0/0:29,0:29:75.21:0,75,900 0/1:20,15:35:99:418,0,541 0/0:73,0:73:99:0,184,2223 0/0:47,0:47:99:0,129,1554 0/0:38,0:38:96.28:0,96,1181 0/1:30,7:37:99:174,0,859 0/0:54,0:54:99:0,135,1658 0/0:32,0:32:81.23:0,81,977 0/0:37,0:38:99:0,99,1113 0/0:39,0:39:96.29:0,96,1184 0/0:45,0:45:99:0,123,1448 0/0:37,0:38:93.28:0,93,1133 0/0:32,0:32:84.25:0,84,1012 0/0:144,0:145:99:0,376,4434 0/0:62,0:63:99:0,171,1994 0/0:37,0:37:96.25:0,96,1140 0/0:51,0:51:99:0,129,1539 0/0:114,0:114:99:0,289,3527 0/0:86,0:87:99:0,217,2593 0/0:77,0:80:99:0,187,2280 0/0:48,0:48:99:0,129,1529 0/0:69,0:70:99:0,184,2167 0/0:31,0:31:81.25:0,81,988 0/0:35,0:35:87.26:0,87,1078 0/0:34,0:34:84.25:0,84,1023 0/0:40,0:40:99:0,105,1261 0/0:67,1:68:99:0,175,2090 0/0:30,0:30:87.22:0,87,996 0/0:73,0:73:99:0,193,2275 0/0:72,0:72:99:0,193,2281 0/0:63,0:64:99:0,162,1972 0/0:70,0:70:99:0,192,2224 0/0:44,0:44:99:0,117,1408 0/0:41,0:41:99:0,108,1307 0/0:55,0:55:99:0,159,1870 0/0:111,0:112:99:0,286,3436 0/0:51,0:51:99:0,141,1649 0/0:40,0:40:99:0,108,1277 0/0:48,0:48:99:0,138,1606 0/0:49,0:49:99:0,129,1550 0/0:41,0:42:99:0,120,1425 15 20588685 . A G 281.22 . AC=1;AF=0.013;AN=80;BaseQRankSum=3.093;DP=2831;Dels=0.00;FS=1.494;HRun=0;HaplotypeScore=1.2122;InbreedingCoeff=-0.0127;MQ=56.92;MQ0=11;MQRankSum=3.046;QD=1.37;ReadPosRankSum=0.871 GT:AD:DP:GQ:PL 0/0:115,0:115:99:0,310,3831 0/0:26,0:26:69.19:0,69,829 0/0:31,0:31:90.26:0,90,1084 0/0:180,0:180:99:0,484,6032 0/1:178,28:206:99:327,0,5588 0/0:126,0:126:99:0,337,4354 0/0:101,0:101:99:0,268,3446 0/0:76,0:76:99:0,196,2459 0/0:32,0:32:90.28:0,90,1099 0/0:33,0:33:90.27:0,90,1093 0/0:17,0:17:48.14:0,48,577 0/0:51,0:51:99:0,141,1727 0/0:69,0:69:99:0,190,2273 0/0:57,0:57:99:0,159,1924 0/0:65,1:66:99:0,156,1962 0/0:10,0:10:30.09:0,30,351 0/0:35,0:35:93.29:0,93,1157 0/0:106,0:106:99:0,307,3646 0/0:130,0:131:99:0,343,4268 0/0:73,0:73:99:0,181,2287 0/0:71,0:72:99:0,196,2403 0/0:22,0:22:57.18:0,57,706 0/0:98,0:98:99:0,253,3234 0/0:108,0:108:99:0,289,3679 0/0:210,0:210:99:0,533,6835 0/0:90,0:90:99:0,241,3001 0/0:47,0:47:99:0,126,1545 0/0:85,0:85:99:0,235,2838 0/0:35,0:35:90.27:0,90,1115 0/0:34,0:34:90.25:0,90,1074 0/0:41,0:41:99:0,117,1416 0/0:115,0:115:99:0,307,3833 0/0:34,0:34:87.26:0,87,1063 0/0:44,0:44:99:0,123,1510 0/0:50,0:50:99:0,132,1639 ./. 0/0:63,0:63:99:0,153,1963 0/0:37,0:37:99:0,105,1295 0/0:29,0:29:69.21:0,69,865 ./. 0/0:20,0:20:54.16:0,54,664 0/0:54,1:56:99:0,124,1856 15 20588693 . C T 2230.58 . AC=12;AF=0.150;AN=80;BaseQRankSum=-17.591;DP=2875;Dels=0.00;FS=14.070;HRun=0;HaplotypeScore=1.3122;InbreedingCoeff=-0.1765;MQ=57.20;MQ0=11;MQRankSum=4.157;QD=1.84;ReadPosRankSum=-0.324 GT:AD:DP:GQ:PL 0/0:115,0:115:99:0,286,3685 0/1:19,8:27:99:170,0,525 0/1:18,12:30:99:285,0,541 0/1:157,22:179:99:186,0,5133 0/1:198,23:221:99:157,0,6690 0/0:123,0:123:99:0,328,4468 0/0:98,0:98:99:0,262,3605 0/0:70,0:70:99:0,187,2513 0/0:32,0:32:87.28:0,87,1123 0/0:31,0:31:90.28:0,90,1113 0/0:20,0:20:57.17:0,57,709 0/0:58,0:58:99:0,150,1896 0/0:75,0:75:99:0,196,2491 0/0:62,0:62:99:0,171,2129 0/0:64,0:64:99:0,169,2175 0/0:11,0:11:30.09:0,30,370 0/0:38,0:38:99:0,108,1378 0/1:90,12:102:52.24:52,0,2856 0/1:121,14:135:66.05:66,0,3756 0/1:67,10:77:99:130,0,1969 0/0:75,0:75:99:0,193,2476 0/0:22,0:22:60.19:0,60,782 0/0:99,0:99:99:0,247,3423 0/1:83,15:99:99:264,0,2699 0/1:184,32:216:99:440,0,5740 0/0:85,0:85:99:0,223,3035 0/1:40,12:52:99:173,0,1291 0/0:84,0:84:99:0,220,2770 0/1:21,13:34:99:276,0,661 0/0:35,0:35:87.25:0,87,1077 0/1:31,9:40:99:174,0,1001 0/0:115,0:116:99:0,313,3988 0/0:30,0:30:81.26:0,81,1043 0/0:42,1:43:85.82:0,86,1430 0/0:55,1:56:99:0,106,1714 ./. 0/0:67,0:67:99:0,168,2149 0/0:44,0:44:99:0,126,1582 0/0:33,0:33:78.25:0,78,1015 ./. 0/0:23,0:23:60.19:0,60,775 0/0:54,0:54:99:0,150,1913 15 20588705 . C A 12208.22 . AC=21;AF=0.263;AN=80;BaseQRankSum=-30.040;DP=2810;Dels=0.00;FS=3.944;HRun=0;HaplotypeScore=1.0937;InbreedingCoeff=-0.3559;MQ=57.67;MQ0=13;MQRankSum=4.819;QD=6.13;ReadPosRankSum=0.323 GT:AD:DP:GQ:PL 0/1:94,21:115:99:368,0,2778 0/0:25,0:25:72.22:0,72,918 0/0:29,0:29:75.23:0,75,963 0/1:144,30:174:99:515,0,4688 0/1:191,43:234:99:807,0,6279 0/1:81,35:116:99:890,0,2642 0/1:70,27:97:99:684,0,2279 0/1:43,24:67:99:606,0,1344 0/0:37,0:37:93.28:0,93,1213 0/1:30,8:38:99:170,0,889 0/0:19,0:19:51.17:0,51,668 0/1:26,38:64:99:1090,0,742 0/0:68,0:68:99:0,175,2313 0/1:14,43:57:99:1227,0,313 0/0:62,0:62:99:0,163,2114 0/0:11,0:11:33.11:0,33,419 0/0:35,0:35:99:0,99,1295 0/1:73,19:92:99:384,0,2315 0/1:89,39:128:99:880,0,2771 0/1:55,28:83:99:647,0,1540 0/1:45,17:62:99:351,0,1346 0/0:21,0:21:57.19:0,57,755 0/1:40,45:85:99:1187,0,1257 0/0:104,0:104:99:0,265,3694 0/1:172,36:208:99:665,0,5356 0/0:88,0:88:99:0,226,3108 0/0:45,0:45:99:0,114,1474 0/1:60,23:83:99:446,0,1863 0/0:31,0:31:87.27:0,87,1110 0/1:21,8:29:99:156,0,662 0/1:24,13:37:99:341,0,748 0/1:109,12:121:86.96:87,0,3396 0/0:28,0:28:72.23:0,72,954 0/0:41,0:41:99:0,111,1416 0/0:51,0:51:99:0,141,1795 ./. 0/1:47,18:65:99:390,0,1381 0/0:43,0:43:99:0,117,1513 0/1:21,14:35:99:318,0,623 ./. 0/0:22,0:22:63.20:0,63,814 0/0:58,0:58:99:0,163,2102 15 20642621 . G C 97.94 . AC=7;AF=0.088;AN=80;BaseQRankSum=0.785;DP=4809;DS;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.3308;InbreedingCoeff=0.0772;MQ=6.23;MQ0=3657;MQRankSum=-2.328;QD=0.13;ReadPosRankSum=0.098 GT:AD:DP:GQ:PL 0/0:170,0:170:53.65:0,54,390 0/1:52,26:78:31.40:31,0,31 0/1:62,18:80:41.14:41,0,84 0/0:214,29:243:40.93:0,41,412 0/0:220,26:247:49.88:0,50,477 0/0:163,0:163:56.63:0,57,412 0/0:127,0:128:23.85:0,24,173 0/0:149,0:149:44.71:0,45,325 0/0:86,0:86:20.87:0,21,152 0/0:65,0:65:14.90:0,15,108 0/0:73,0:73:14.90:0,15,108 0/0:86,0:86:17.88:0,18,130 0/0:82,0:83:14.90:0,15,108 0/0:82,0:82:17.88:0,18,130 0/0:200,0:201:29.81:0,30,217 0/0:59,0:59:8.94:0,9,65 0/0:86,0:86:17.88:0,18,130 0/1:91,16:108:13.52:14,0,143 0/0:196,27:224:34.99:0,35,373 0/1:143,27:170:8.35:8,0,290 0/0:144,0:144:32.79:0,33,238 0/0:72,0:72:8.94:0,9,65 0/0:194,0:194:35.77:0,36,260 0/1:109,26:135:47.10:47,0,47 0/0:207,31:238:21.46:0,21,498 0/0:120,0:120:35.77:0,36,260 0/0:84,7:91:11.92:0,12,87 0/0:83,0:84:20.87:0,21,152 0/1:53,13:66:0.98:43,6,0 0/0:66,0:66:8.94:0,9,65 0/1:69,27:96:25.44:25,0,69 0/0:182,0:182:41.73:0,42,303 0/0:87,0:88:5.96:0,6,43 0/0:65,0:65:14.93:0,15,116 0/0:87,0:87:20.87:0,21,152 ./. 0/0:131,0:131:29.81:0,30,217 0/0:79,0:80:20.87:0,21,152 0/0:59,0:59:2.98:0,3,22 ./. 0/0:35,0:35:8.94:0,9,65 0/0:104,0:104:17.88:0,18,130 15 20644849 . C T 646.01 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.862;DP=3358;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.1816;InbreedingCoeff=-0.0295;MQ=19.90;MQ0=912;MQRankSum=-0.146;QD=4.82;ReadPosRankSum=1.050 GT:AD:DP:GQ:PL 0/0:127,0:127:99:0,243,2222 0/0:50,0:50:89.97:0,90,879 0/0:74,0:74:99:0,126,1241 0/0:152,0:152:99:0,252,2325 0/0:168,0:168:99:0,309,2958 0/0:72,0:72:99:0,114,1093 0/0:84,0:85:99:0,156,1559 0/0:113,0:113:99:0,177,1726 0/0:71,0:71:98.91:0,99,910 0/0:47,0:47:59.97:0,60,569 0/0:55,0:56:92.97:0,93,893 0/0:68,0:68:99:0,114,1016 0/0:68,0:68:99:0,144,1311 0/0:42,0:42:74.94:0,75,681 0/0:175,0:175:99:0,330,3114 0/0:28,0:28:41.97:0,42,377 0/0:79,0:79:99:0,138,1233 0/0:104,0:104:99:0,174,1583 0/0:181,0:181:99:0,330,3009 0/0:173,0:173:99:0,318,3042 0/0:144,0:144:99:0,243,2465 0/0:54,0:54:99:0,108,1008 0/0:112,0:112:99:0,216,2016 0/0:86,0:86:99:0,156,1396 0/0:147,0:147:99:0,231,2258 0/0:50,0:50:69.06:0,69,759 0/0:66,0:66:99:0,117,1140 0/0:86,0:86:99:0,138,1337 0/0:34,0:34:44.96:0,45,397 0/1:31,37:68:99:467,0,276 0/1:46,20:66:99:242,0,756 0/0:183,0:183:99:0,369,3525 0/0:52,0:52:86.97:0,87,844 0/0:20,0:20:26.96:0,27,222 0/0:41,0:41:80.92:0,81,717 0/0:5,0:5:3:0,3,25 0/0:61,0:61:99:0,114,1053 0/0:41,0:41:83.90:0,84,721 0/0:19,0:19:26.99:0,27,239 0/0:1,0:1:3:0,3,25 0/0:17,0:17:32.96:0,33,290 0/0:72,0:72:99:0,102,930 15 20651205 . A G 42.15 . AC=3;AF=0.043;AN=70;BaseQRankSum=-5.746;DP=5059;DS;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.3652;InbreedingCoeff=0.3086;MQ=5.73;MQ0=4409;MQRankSum=-2.487;QD=0.15;ReadPosRankSum=0.174 GT:AD:DP:GQ:PL 0/0:158,5:163:71.95:0,72,653 0/0:71,23:94:2.99:0,3,24 0/1:88,22:110:15.70:16,0,16 0/0:196,52:250:20.23:0,20,309 0/0:205,38:245:23.43:0,23,431 0/0:147,4:151:32.96:0,33,295 0/0:127,7:135:38.97:0,39,359 0/0:129,7:137:14.91:0,15,110 0/0:78,5:83:2.98:0,3,22 0/0:72,5:77:14.98:0,15,132 0/0:75,3:78:11.95:0,12,91 0/0:118,11:129:11.97:0,12,104 0/0:104,7:111:14.93:0,15,112 0/0:93,8:101:33.02:0,33,318 0/0:207,28:235:8.95:0,9,67 0/0:65,4:69:2.98:0,3,22 0/0:76,5:81:9.01:0,9,82 0/0:108,28:136:2.30:0,2,171 0/0:125,28:156:14.90:0,15,108 0/0:136,28:164:17.97:0,18,167 0/0:118,22:141:17.99:0,18,161 0/0:72,5:77:2.98:0,3,22 0/0:194,15:209:11.95:0,12,91 0/0:123,38:161:1.32:0,1,181 0/0:180,33:213:9.61:0,10,429 0/0:116,5:122:17.91:0,18,134 0/0:58,19:77:8.95:0,9,67 ./. ./. 0/1:59,19:78:0.27:87,12,0 0/1:56,43:99:1.76:22,3,0 0/0:234,10:244:50.86:0,51,425 0/0:75,4:79:8.95:0,9,67 ./. 0/0:87,4:92:2.98:0,3,22 ./. 0/0:96,11:108:17.90:0,18,132 0/0:101,3:104:12:0,12,114 ./. ./. ./. 0/0:84,8:92:2.98:0,3,22 15 20651211 . C T 72.61 . AC=4;AF=0.057;AN=70;BaseQRankSum=-1.953;DP=5087;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4387;InbreedingCoeff=-0.1039;MQ=6.84;MQ0=4304;MQRankSum=-2.039;QD=0.09;ReadPosRankSum=-1.087 GT:AD:DP:GQ:PL 0/0:152,1:154:68.98:0,69,638 0/0:76,13:89:2.99:0,3,24 0/1:93,13:106:15.70:16,0,16 0/1:210,40:250:25.18:25,0,621 0/1:214,29:244:81.21:81,0,593 0/0:149,0:149:50.92:0,51,454 0/0:142,0:142:62.90:0,63,564 0/0:143,0:143:23.87:0,24,177 0/0:81,0:81:2.98:0,3,22 0/0:79,0:79:14.98:0,15,133 0/0:79,0:79:8.95:0,9,67 0/0:131,0:131:14.98:0,15,138 0/0:103,0:103:14.93:0,15,112 0/0:109,0:109:30.01:0,30,282 0/0:237,0:238:32.85:0,33,249 0/0:72,0:72:2.98:0,3,22 0/0:87,0:87:12.01:0,12,110 0/0:108,19:127:11.30:0,11,252 0/0:146,13:160:14.92:0,15,110 0/0:145,24:169:16.21:0,16,280 0/0:152,0:153:36:0,36,332 0/0:82,0:82:5.97:0,6,44 0/0:207,0:207:38.85:0,39,309 0/0:131,31:162:2.85:0,0,364 0/1:193,28:221:30.17:30,0,757 0/0:123,0:123:26.87:0,27,202 0/0:63,16:79:14.93:0,15,112 ./. ./. 0/0:73,0:73:11.92:0,12,87 0/0:72,26:98:2.99:0,3,24 0/0:240,0:240:65.78:0,66,540 0/0:77,0:77:8.98:0,9,87 ./. 0/0:94,0:94:2.98:0,3,22 ./. 0/0:106,1:107:20.91:0,21,174 0/0:98,0:98:11.99:0,12,108 ./. ./. ./. 0/0:95,0:95:2.98:0,3,22 15 20666571 . G A 136.15 . AC=2;AF=0.025;AN=80;BaseQRankSum=-1.624;DP=4676;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1495;InbreedingCoeff=-0.0447;MQ=7.59;MQ0=3933;MQRankSum=1.179;QD=0.37;ReadPosRankSum=-0.197 GT:AD:DP:GQ:PL 0/0:153,0:153:48.02:0,48,436 0/0:72,0:72:12:0,12,107 0/0:64,0:64:6:0,6,53 0/0:246,0:246:78.03:0,78,700 0/0:223,0:223:63.04:0,63,583 0/1:120,40:160:59.02:59,0,86 0/0:152,0:152:57.03:0,57,514 0/1:159,50:209:99:139,0,192 0/0:75,0:75:30.01:0,30,267 0/0:59,0:59:12.02:0,12,124 0/0:65,0:65:18.01:0,18,160 0/0:80,0:80:30.01:0,30,270 0/0:103,0:103:30.01:0,30,267 0/0:74,0:74:15:0,15,133 0/0:179,0:179:33.02:0,33,305 0/0:44,0:44:9:0,9,80 0/0:68,0:68:18.01:0,18,160 0/0:139,0:139:57.03:0,57,514 0/0:155,1:157:42.01:0,42,373 0/0:138,0:138:21.01:0,21,188 0/0:158,0:158:27.01:0,27,240 0/0:71,0:71:12:0,12,107 0/0:187,0:187:60.03:0,60,548 0/0:176,0:176:42.02:0,42,376 0/0:246,0:246:45.01:0,45,400 0/0:127,0:127:21.01:0,21,187 0/0:76,0:76:12:0,12,107 0/0:85,0:85:27.01:0,27,240 0/0:66,0:66:12:0,12,107 0/0:67,0:67:11.99:0,12,103 0/0:84,0:84:21.01:0,21,187 0/0:175,0:175:33.02:0,33,296 0/0:74,0:74:9:0,9,80 0/0:63,0:63:6:0,6,53 0/0:77,0:77:18.01:0,18,160 ./. 0/0:113,0:113:17.99:0,18,158 0/0:91,0:91:30.01:0,30,267 0/0:44,19:63:9:0,9,80 ./. 0/0:58,0:58:6:0,6,53 0/0:91,0:91:27.01:0,27,240 15 21051197 . C T 236.44 . AC=4;AF=0.048;AN=84;BaseQRankSum=-5.567;DP=9626;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.1588;InbreedingCoeff=-0.0520;MQ=9.36;MQ0=7007;MQRankSum=0.129;QD=0.24;ReadPosRankSum=2.987 GT:AD:DP:GQ:PL 0/0:242,0:242:95.46:0,95,711 0/0:246,0:246:99:0,101,742 0/0:238,0:239:99:0,125,951 0/0:250,0:250:99:0,134,1071 0/0:234,0:235:99:0,105,861 0/0:248,0:248:99:0,149,1206 0/0:244,1:245:99:0,152,1235 0/0:224,0:224:99:0,167,1338 0/0:243,0:243:99:0,158,1204 0/0:249,0:249:83.53:0,84,624 0/0:183,0:183:99:0,110,816 0/0:226,0:226:99:0,134,1003 0/0:250,0:250:99:0,143,1050 0/0:175,1:176:99:0,104,775 0/0:249,0:250:99:0,358,2746 0/0:143,0:143:71.65:0,72,560 0/1:197,36:233:40.49:40,0,454 0/0:250,0:250:99:0,185,1399 0/0:250,0:250:99:0,254,1904 0/1:202,41:243:73.71:74,0,648 0/0:250,0:250:99:0,191,1552 0/0:176,0:176:99:0,161,1301 0/0:249,0:249:99:0,215,1735 0/1:196,50:246:99:103,0,894 0/1:216,34:250:99:106,0,1047 0/0:247,0:247:99:0,179,1395 0/0:247,2:249:99:0,143,1067 0/0:219,0:219:99:0,128,990 0/0:238,0:238:99:0,131,1022 0/0:208,1:209:94.67:0,95,825 0/0:225,0:225:99:0,119,894 0/0:226,24:250:7.42:0,7,1556 0/0:219,0:219:99:0,176,1404 0/0:236,1:237:99:0,125,938 0/0:228,0:228:99:0,113,855 0/0:225,0:225:99:0,131,996 0/0:236,0:236:99:0,137,1037 0/0:247,0:248:99:0,152,1135 0/0:222,0:222:99:0,116,862 0/0:134,0:134:74.62:0,75,583 0/0:208,1:209:99:0,107,803 0/0:235,0:235:65.58:0,66,477 15 21051201 . T C 570.64 . AC=3;AF=0.036;AN=84;BaseQRankSum=5.941;DP=9567;DS;Dels=0.00;FS=7.403;HRun=0;HaplotypeScore=2.1454;InbreedingCoeff=-0.0400;MQ=9.40;MQ0=6936;MQRankSum=-3.642;QD=0.91;ReadPosRankSum=0.685 GT:AD:DP:GQ:PL 0/0:250,0:250:95.46:0,95,711 0/0:240,3:244:99:0,104,768 0/0:240,0:241:99:0,131,994 0/0:248,0:248:99:0,128,1014 0/0:227,0:227:99:0,102,829 0/0:247,0:247:99:0,146,1170 0/0:250,0:250:99:0,155,1251 0/0:223,0:223:99:0,170,1357 0/0:193,52:245:16.18:0,16,919 0/0:188,61:250:40.20:0,40,537 0/0:182,0:183:99:0,110,816 0/0:230,0:230:99:0,131,975 0/0:244,0:244:99:0,143,1050 0/0:180,0:180:99:0,107,797 0/1:189,61:250:99:363,0,1675 0/0:138,0:138:68.65:0,69,530 0/0:196,28:225:62.81:0,63,620 0/0:250,0:250:99:0,182,1370 0/0:249,0:249:99:0,254,1900 0/0:250,0:250:99:0,131,983 0/0:250,0:250:99:0,191,1544 0/0:178,0:178:99:0,155,1240 0/1:168,78:246:99:167,0,1128 0/0:238,0:239:99:0,155,1286 0/0:249,0:250:99:0,200,1549 0/0:250,0:250:99:0,179,1385 0/0:249,0:250:99:0,146,1088 0/0:212,0:212:99:0,125,960 0/0:230,0:230:99:0,131,1021 0/0:200,0:201:99:0,116,868 0/0:228,0:228:99:0,119,894 0/0:250,0:250:99:0,248,2029 0/0:219,0:219:99:0,182,1445 0/0:236,0:236:99:0,125,936 0/0:219,0:219:99:0,110,827 0/0:215,0:215:99:0,131,995 0/0:212,25:237:14.22:0,14,807 0/0:205,44:249:57.44:0,57,966 0/0:220,0:220:99:0,113,840 0/1:76,53:129:99:115,0,316 0/0:158,42:201:6.80:0,7,621 0/0:201,31:232:65.58:0,66,477 15 22489958 . C T 4938.56 . AC=32;AF=0.381;AN=84;BaseQRankSum=0.471;DP=1157;Dels=0.00;FS=3.855;HRun=0;HaplotypeScore=0.6359;InbreedingCoeff=-0.6150;MQ=58.54;MQ0=0;MQRankSum=-1.288;QD=5.23;ReadPosRankSum=0.200 GT:AD:DP:GQ:PL 0/1:33,8:41:99:171,0,923 0/1:18,4:22:66.20:66,0,494 0/0:12,0:12:33.07:0,33,378 0/1:39,4:43:47.39:47,0,1182 0/1:35,6:41:99:118,0,1183 0/1:8,15:23:99:462,0,247 0/1:20,2:22:23.46:23,0,641 0/1:10,8:18:99:226,0,306 0/1:20,3:23:18:18,0,556 0/1:12,6:18:99:150,0,367 0/1:12,3:15:73.91:74,0,318 0/0:20,0:20:48.12:0,48,582 0/1:24,3:27:34.32:34,0,716 0/0:23,1:24:30.08:0,30,758 0/0:40,1:41:67.53:0,68,1231 0/0:10,0:10:27.08:0,27,333 0/1:28,6:34:96.14:96,0,810 0/1:15,4:19:60.60:61,0,397 0/1:62,11:74:99:116,0,1864 0/1:37,14:51:99:329,0,1157 0/1:32,10:42:99:241,0,1017 0/1:17,11:28:99:237,0,516 0/1:36,9:45:99:235,0,1152 0/1:19,6:25:99:107,0,614 0/1:29,5:34:82.40:82,0,1002 0/1:24,6:30:99:114,0,797 0/1:3,2:5:60.54:61,0,101 0/1:18,12:30:99:299,0,558 0/0:14,0:14:36.10:0,36,426 0/1:6,9:15:99:228,0,183 0/1:15,4:19:99:104,0,408 0/0:42,0:42:99:0,108,1348 0/1:17,7:24:99:164,0,413 0/1:16,4:20:94.76:95,0,486 0/1:14,12:26:99:349,0,391 0/1:24,8:32:99:171,0,790 0/1:46,13:59:99:312,0,1358 0/1:15,4:19:93.44:93,0,463 0/1:18,3:21:54.32:54,0,502 0/0:9,0:9:27.08:0,27,321 0/0:10,0:10:27.09:0,27,348 0/0:30,0:30:81.25:0,81,1011 15 22489966 . A C 4873.62 . AC=30;AF=0.357;AN=84;BaseQRankSum=12.309;DP=1202;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.7113;InbreedingCoeff=-0.5516;MQ=58.52;MQ0=0;MQRankSum=-2.124;QD=5.17;ReadPosRankSum=0.646 GT:AD:DP:GQ:PL 0/1:35,10:45:99:187,0,1001 0/1:19,7:26:99:154,0,545 0/0:11,0:11:33.09:0,33,381 0/1:41,4:45:49.01:49,0,1131 0/1:41,6:47:99:122,0,1186 0/1:10,16:26:99:499,0,282 0/1:27,2:29:6:6,0,756 0/1:10,6:16:99:193,0,284 0/0:22,2:24:11.84:0,12,573 0/1:13,6:19:99:143,0,396 0/1:14,3:17:63.95:64,0,383 0/0:20,1:21:45.14:0,45,552 0/0:24,1:25:29.87:0,30,740 0/0:25,1:26:32.76:0,33,751 0/0:41,0:41:99:0,114,1355 0/0:8,0:8:24.07:0,24,288 0/1:29,5:35:72.41:72,0,827 0/1:12,2:14:21.21:21,0,322 0/1:65,12:78:99:107,0,1865 0/1:36,14:50:99:242,0,1105 0/1:38,12:50:99:241,0,1024 0/1:19,9:28:99:166,0,547 0/1:36,11:48:99:232,0,1081 0/1:14,5:19:99:115,0,439 0/1:29,4:33:60.90:61,0,882 0/1:24,5:29:99:117,0,763 0/1:3,1:4:27.97:28,0,98 0/1:16,11:28:99:326,0,446 0/0:14,0:14:36.11:0,36,440 0/1:7,10:17:99:258,0,213 0/1:16,5:21:99:131,0,431 0/0:40,0:41:99:0,105,1294 0/1:19,8:27:99:169,0,476 0/1:16,6:22:99:165,0,449 0/1:15,15:30:99:375,0,439 0/1:22,7:29:99:134,0,715 0/1:51,13:64:99:206,0,1467 0/1:17,8:25:99:233,0,513 0/1:19,3:22:55.56:56,0,529 0/0:8,1:9:24.06:0,24,280 0/0:12,0:12:36.11:0,36,431 0/0:27,0:27:78.22:0,78,939 15 22489988 . G A 4860.31 . AC=29;AF=0.345;AN=84;BaseQRankSum=-10.600;DP=1349;Dels=0.00;FS=6.121;HRun=0;HaplotypeScore=0.5675;InbreedingCoeff=-0.5340;MQ=58.82;MQ0=1;MQRankSum=0.968;QD=4.64;ReadPosRankSum=0.082 GT:AD:DP:GQ:PL 0/1:42,12:54:99:195,0,1094 0/1:21,6:27:99:145,0,581 0/0:12,0:12:36.11:0,36,438 0/1:42,6:48:47.30:47,0,1224 0/1:41,9:50:99:200,0,1255 0/1:15,17:32:99:404,0,458 0/0:41,1:42:51.72:0,52,1161 0/1:10,10:20:99:282,0,309 0/1:19,3:22:51.54:52,0,594 0/1:21,6:27:99:117,0,560 0/0:15,1:16:5.15:0,5,457 0/0:16,0:16:39.10:0,39,484 0/0:23,1:24:37.86:0,38,800 0/0:19,1:20:28.49:0,28,621 0/0:55,0:55:99:0,129,1588 0/0:9,0:9:24.05:0,24,287 0/1:28,6:34:99:101,0,842 0/1:13,3:16:58.89:59,0,371 0/1:80,12:94:99:179,0,2210 0/1:46,9:55:99:145,0,1337 0/1:50,11:61:99:190,0,1208 0/1:14,6:20:99:132,0,419 0/1:42,13:55:99:286,0,1161 0/1:15,5:20:99:104,0,460 0/1:41,6:47:99:111,0,1144 0/1:24,3:27:39.96:40,0,741 0/1:8,2:10:45.15:45,0,247 0/1:23,12:35:99:299,0,637 0/0:15,0:15:42.12:0,42,517 0/1:8,9:17:99:258,0,194 0/1:16,9:25:99:192,0,496 0/0:40,0:40:99:0,105,1356 0/1:22,9:31:99:207,0,656 0/1:23,6:29:99:140,0,638 0/1:22,12:34:99:337,0,532 0/1:22,11:33:99:215,0,682 0/1:51,10:61:99:115,0,1431 0/1:22,9:31:99:221,0,578 0/1:28,4:32:44.12:44,0,796 0/0:12,0:12:33.11:0,33,430 0/0:15,0:15:45.14:0,45,556 0/0:26,0:26:69.20:0,69,863 15 22490018 . C T 1165.13 . AC=5;AF=0.060;AN=84;BaseQRankSum=-5.456;DP=1287;Dels=0.00;FS=1.899;HRun=2;HaplotypeScore=1.9791;InbreedingCoeff=-0.0634;MQ=58.70;MQ0=4;MQRankSum=0.334;QD=6.98;ReadPosRankSum=-0.617 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,117,1493 0/1:10,8:18:99:214,0,318 0/1:4,10:14:99:302,0,113 0/0:37,0:37:90.30:0,90,1248 0/0:49,0:49:99:0,129,1766 0/0:28,0:28:78.25:0,78,1067 0/0:41,0:41:99:0,105,1448 0/0:27,0:27:72.21:0,72,967 0/0:21,0:21:57.18:0,57,733 0/0:28,0:28:69.22:0,69,894 0/0:17,0:17:48.15:0,48,610 0/0:14,0:14:39.12:0,39,490 0/0:21,0:21:57.18:0,57,719 0/0:16,0:16:42.14:0,42,549 0/0:44,1:46:99:0,120,1533 0/0:9,0:9:27.09:0,27,345 0/0:32,0:32:84.27:0,84,1086 0/0:24,0:24:66.21:0,66,842 0/0:74,1:75:99:0,202,2567 0/0:61,0:61:99:0,153,1981 0/1:43,17:60:99:390,0,1239 0/0:21,0:21:57.18:0,57,739 0/0:56,0:56:99:0,147,1998 0/0:20,0:20:57.19:0,57,787 0/0:40,0:40:99:0,117,1590 0/0:25,0:25:63.21:0,63,870 0/0:12,0:12:27.09:0,27,366 0/0:37,0:37:96.31:0,96,1243 0/0:12,0:12:33.10:0,33,416 0/0:19,0:19:45.14:0,45,585 0/0:23,0:23:63.20:0,63,806 0/1:34,11:45:99:247,0,957 0/0:33,0:33:84.27:0,84,1080 0/0:30,0:30:78.22:0,78,966 0/0:35,0:35:93.29:0,93,1203 0/1:25,5:30:99:109,0,776 0/0:54,0:54:99:0,141,1789 0/0:30,0:30:75.24:0,75,986 0/0:28,0:28:72.20:0,72,903 0/0:12,0:12:36.11:0,36,447 0/0:17,0:17:51.15:0,51,634 0/0:26,0:26:72.23:0,72,943 15 22490019 . T C 4534.13 . AC=30;AF=0.357;AN=84;BaseQRankSum=-10.374;DP=1288;Dels=0.00;FS=6.875;HRun=1;HaplotypeScore=1.9616;InbreedingCoeff=-0.5491;MQ=58.70;MQ0=4;MQRankSum=-2.680;QD=4.44;ReadPosRankSum=0.878 GT:AD:DP:GQ:PL 0/1:36,8:44:88.94:89,0,1106 0/1:14,4:18:97.84:98,0,431 0/0:14,0:14:39.12:0,39,487 0/1:32,6:38:61.12:61,0,915 0/1:37,11:48:99:179,0,1200 0/1:16,12:28:99:299,0,543 0/0:40,0:40:99:0,105,1366 0/1:14,13:27:99:342,0,427 0/1:18,5:23:99:122,0,480 0/1:21,7:28:99:139,0,587 0/0:16,1:17:8.16:0,8,485 0/0:13,0:13:36.11:0,36,448 0/1:19,2:21:5.08:5,0,597 0/0:16,0:16:42.13:0,42,537 0/0:46,0:46:99:0,123,1535 0/0:9,0:9:27.08:0,27,333 0/1:23,9:32:99:208,0,720 0/1:22,3:25:38.84:39,0,676 0/1:64,11:75:99:174,0,1929 0/1:49,9:59:99:140,0,1407 0/1:51,10:61:99:129,0,1470 0/1:16,5:21:99:112,0,474 0/1:44,12:56:99:216,0,1347 0/1:18,2:20:15.87:16,0,598 0/1:32,8:40:99:171,0,1081 0/1:22,3:25:44.20:44,0,646 0/1:9,3:12:74.74:75,0,221 0/1:27,10:37:99:200,0,799 0/0:12,0:12:33.10:0,33,414 0/1:12,7:19:99:171,0,312 0/1:14,9:23:99:219,0,436 0/0:45,0:45:99:0,105,1356 0/1:23,10:34:99:259,0,602 0/1:21,9:30:99:104,0,669 0/1:21,13:34:99:309,0,627 0/1:23,8:31:99:156,0,711 0/1:40,14:54:99:260,0,1216 0/1:20,10:30:99:189,0,599 0/1:25,3:28:9.58:10,0,739 0/0:11,0:11:33.10:0,33,403 0/0:17,0:17:51.16:0,51,623 0/0:27,0:27:75.24:0,75,946 15 22833545 . G C 22.24 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.113;DP=259;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.1626;InbreedingCoeff=-0.0536;MQ=58.17;MQ0=0;MQRankSum=-0.395;QD=2.22;ReadPosRankSum=1.402 GT:AD:DP:GQ:PL 0/0:6,0:6:15.04:0,15,175 0/0:6,0:6:15.03:0,15,169 0/0:4,0:4:12.03:0,12,136 0/0:19,0:19:48.14:0,48,582 0/0:15,0:15:45.13:0,45,555 0/0:8,0:8:24.08:0,24,301 0/0:8,0:8:24.07:0,24,303 0/0:4,0:4:12.04:0,12,155 0/0:6,0:6:18.05:0,18,207 0/0:4,0:4:12.03:0,12,128 0/0:5,0:5:12.03:0,12,141 0/1:2,1:3:23.48:23,0,56 0/0:2,0:2:6.02:0,6,72 0/1:5,2:7:59.84:60,0,131 0/0:9,0:9:24.04:0,24,263 0/0:4,0:4:12.03:0,12,130 0/0:6,0:6:18.04:0,18,193 0/0:5,0:5:12.03:0,12,141 0/0:6,0:6:18.05:0,18,207 0/0:11,0:11:30.08:0,30,334 0/0:6,0:6:18.04:0,18,190 0/0:5,0:5:15.04:0,15,169 0/0:14,0:14:30.10:0,30,392 0/0:6,0:6:15.05:0,15,200 0/0:7,0:7:21.06:0,21,250 0/0:4,0:4:12.03:0,12,143 0/0:3,0:3:9.02:0,9,97 0/0:5,0:5:12.04:0,12,151 0/0:5,0:5:15.04:0,15,171 0/0:4,0:4:12.04:0,12,143 0/0:2,0:2:3.01:0,3,32 0/0:9,0:9:21.06:0,21,261 0/0:3,0:3:6.02:0,6,75 0/0:2,0:2:6.01:0,6,64 0/0:5,0:5:12.03:0,12,135 0/0:7,0:7:21.06:0,21,234 0/0:13,0:13:36.10:0,36,408 0/0:4,0:4:12.03:0,12,128 0/0:5,0:5:15.04:0,15,168 0/0:2,0:2:6.02:0,6,68 0/0:3,0:3:9.02:0,9,95 0/0:7,0:7:21.06:0,21,244 15 22835939 . A C 1498.75 . AC=6;AF=0.071;AN=84;BaseQRankSum=-41.235;DP=6682;DS;Dels=0.00;FS=1090.313;HRun=1;HaplotypeScore=3.0173;InbreedingCoeff=-0.0836;MQ=59.35;MQ0=0;MQRankSum=0.987;QD=1.32;ReadPosRankSum=-19.395 GT:AD:DP:GQ:PL 0/0:80,51:132:99:0,116,2479 0/0:75,65:140:63.52:0,64,2107 0/0:66,60:126:33.79:0,34,2024 0/1:80,158:238:57.25:57,0,2148 0/0:87,120:207:46.01:0,46,2454 0/0:128,100:229:99:0,152,3477 0/0:117,103:220:99:0,255,3454 0/0:101,86:187:99:0,160,2732 0/0:77,66:143:99:0,112,2154 0/0:62,59:121:55.58:0,56,1766 0/0:56,45:101:63.82:0,64,1657 0/0:81,64:145:99:0,122,2341 0/0:108,13:121:99:0,271,3169 0/0:91,50:141:99:0,216,2779 0/1:65,185:250:99:535,0,1772 0/0:49,43:92:48.66:0,49,1448 0/0:75,62:137:63.18:0,63,2099 0/0:65,66:132:25.83:0,26,1931 0/1:89,89:178:99:228,0,2339 0/0:139,79:218:99:0,320,3967 0/1:91,87:178:99:356,0,2543 0/0:58,60:118:99:0,118,1681 0/0:106,143:250:30.78:0,31,3256 0/0:90,113:203:93.62:0,94,2611 0/0:119,128:247:99:0,137,3259 0/0:120,119:239:99:0,210,3490 0/0:52,58:110:3.15:0,3,1462 0/0:88,43:131:99:0,163,2618 0/1:65,61:126:24.71:25,0,1900 0/0:68,64:132:91.88:0,92,2091 0/0:60,63:123:99:0,106,1818 0/0:120,79:199:99:0,207,3171 0/0:59,55:114:7.76:0,8,1712 0/0:66,61:127:88.44:0,88,1846 0/0:68,64:132:91.67:0,92,1970 0/0:84,61:145:99:0,142,2589 0/1:77,91:168:99:403,0,2125 0/0:90,71:161:99:0,126,2441 0/0:61,74:135:19.33:0,19,1725 0/0:80,61:141:99:0,142,2477 0/0:78,50:128:98.50:0,98,2379 0/0:69,48:117:99:0,100,2022 15 22835939 . A AC 1754.99 . AC=6;AF=0.071;AN=84;BaseQRankSum=13.713;DP=7024;DS;FS=2032.460;HRun=1;HaplotypeScore=653.3692;InbreedingCoeff=-0.0795;MQ=58.95;MQ0=0;MQRankSum=-1.650;QD=1.44;ReadPosRankSum=-39.072 GT:AD:DP:GQ:PL 0/0:137,0:137:90.69:0,91,2856 0/0:150,0:150:84.29:0,84,2581 0/0:135,0:135:99:0,110,2404 0/1:243,0:243:70.42:70,0,2788 0/0:206,1:207:14.29:0,14,2600 0/0:240,0:236:40.65:0,41,3721 0/0:233,0:224:99:0,207,3923 0/0:193,0:185:99:0,129,3212 0/0:150,0:150:88.06:0,88,2579 0/0:124,0:124:21.31:0,21,1850 0/0:109,0:109:99:0,116,1821 0/0:153,0:153:93.13:0,93,2516 0/0:111,37:148:39.53:0,40,2826 0/0:150,0:149:99:0,173,3084 0/1:250,0:250:99:476,0,1891 0/0:99,0:98:44.53:0,45,1500 0/0:145,0:145:53.30:0,53,2406 0/0:138,0:138:65.36:0,65,2345 0/1:203,0:203:99:441,0,2374 0/0:226,1:227:99:0,336,4881 0/1:202,1:203:99:450,0,2701 0/0:126,0:126:99:0,111,2150 0/0:250,0:250:83.06:0,83,3607 0/0:210,0:206:22.24:0,22,2924 0/0:250,0:240:99:0,191,4007 0/0:250,0:245:99:0,200,3858 0/0:118,0:118:49.29:0,49,1813 0/0:134,0:134:99:0,135,3049 0/1:131,0:131:32.63:33,0,2053 0/0:134,0:134:99:0,102,2270 0/0:136,0:136:47.11:0,47,2100 0/0:206,0:206:99:0,203,3803 0/0:118,0:118:45.54:0,46,2043 0/0:131,0:131:7.95:0,8,2034 0/0:135,0:135:99:0,100,2458 0/0:153,0:153:99:0,178,3022 0/1:192,0:192:99:400,0,2327 0/0:170,0:170:99:0,130,2903 0/0:143,0:143:36.54:0,37,2051 0/0:146,0:146:99:0,131,2716 0/0:130,0:130:70.97:0,71,2595 0/0:124,0:124:88:0,88,2305 15 22835964 . C A 1721.24 . AC=1;AF=0.012;AN=84;BaseQRankSum=6.131;DP=6748;DS;Dels=0.00;FS=2.862;HRun=0;HaplotypeScore=1.7097;InbreedingCoeff=-0.0120;MQ=59.30;MQ0=1;MQRankSum=0.100;QD=12.66;ReadPosRankSum=0.347 GT:AD:DP:GQ:PL 0/0:128,1:130:99:0,352,3996 0/0:141,0:141:99:0,382,4303 0/0:140,0:140:99:0,385,4335 0/0:207,0:207:99:0,575,6971 0/0:184,0:184:99:0,512,6328 0/0:216,0:216:99:0,602,7435 0/0:206,0:206:99:0,575,7131 0/0:195,0:195:99:0,530,6576 0/0:141,0:141:99:0,391,4426 0/0:115,0:115:99:0,319,3575 0/0:113,1:114:99:0,316,3508 0/0:139,0:139:99:0,394,4428 0/0:137,0:137:99:0,352,4085 0/0:134,0:134:99:0,364,4157 0/0:246,0:246:99:0,680,7518 0/0:94,0:94:99:0,262,2936 0/0:151,0:151:99:0,418,4711 0/0:139,1:140:99:0,382,4339 0/0:213,0:213:99:0,577,6434 0/0:199,0:199:99:0,545,6254 0/0:209,1:210:99:0,520,6244 0/0:122,0:123:99:0,352,3883 0/0:246,0:246:99:0,647,8136 0/0:201,0:201:99:0,557,6880 0/0:215,0:216:99:0,599,7410 0/0:227,1:228:99:0,585,7643 0/0:114,0:114:99:0,313,3498 0/1:73,63:136:99:1767,0,1902 0/0:127,0:127:99:0,349,4000 0/0:133,1:134:99:0,370,4203 0/0:121,0:121:99:0,340,3808 0/0:197,0:197:99:0,514,5957 0/0:120,0:120:99:0,322,3652 0/0:130,0:130:99:0,358,4012 0/0:139,1:140:99:0,340,4139 0/0:143,0:143:99:0,388,4415 0/0:200,0:200:99:0,550,6188 0/0:167,0:167:99:0,466,5205 0/0:146,0:146:99:0,415,4629 0/0:145,0:145:99:0,406,4587 0/0:130,0:130:99:0,361,4144 0/0:132,0:132:99:0,370,4114 15 22846932 . G A 2011.33 . 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C T 522.84 . 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G A 16134.27 . AC=19;AF=0.226;AN=84;BaseQRankSum=16.437;DP=2729;Dels=0.00;FS=2.200;HRun=0;HaplotypeScore=1.8719;InbreedingCoeff=-0.1563;MQ=58.70;MQ0=0;MQRankSum=0.139;QD=14.82;ReadPosRankSum=1.753 GT:AD:DP:GQ:PL 0/1:27,22:49:99:552,0,597 0/1:30,24:54:99:633,0,749 0/1:21,25:46:99:688,0,558 0/0:91,0:91:99:0,244,2911 0/0:73,0:74:99:0,202,2417 0/0:65,0:65:99:0,178,2172 0/1:24,27:51:99:705,0,682 0/0:53,0:54:99:0,144,1730 0/1:22,37:59:99:1065,0,535 0/1:28,24:52:99:660,0,734 0/0:50,0:50:99:0,150,1644 0/1:26,24:50:99:656,0,646 0/0:37,0:37:99:0,102,1119 0/1:33,38:72:99:1091,0,758 0/0:179,0:179:99:0,478,5278 0/0:65,0:65:99:0,189,2067 0/0:51,0:51:99:0,141,1557 0/0:50,0:50:99:0,141,1533 0/0:81,0:81:99:0,217,2330 0/1:45,55:100:99:1454,0,1095 0/0:92,0:92:99:0,259,2863 0/0:64,1:65:99:0,171,1858 0/1:50,33:83:99:907,0,1437 0/0:38,0:38:99:0,105,1270 0/1:22,35:57:99:1072,0,606 0/1:32,17:49:99:394,0,950 0/0:58,1:59:99:0,165,1848 0/0:53,0:53:99:0,153,1637 0/1:27,27:54:99:713,0,616 0/1:40,33:73:99:913,0,1014 0/0:55,0:55:99:0,162,1791 0/0:97,0:97:99:0,277,3007 1/1:0,74:74:99:2462,208,0 0/1:32,31:63:99:929,0,763 0/1:30,31:61:99:827,0,810 0/0:66,0:66:99:0,189,2086 0/0:90,0:91:99:0,214,2359 0/0:49,0:49:99:0,141,1577 0/0:69,0:69:99:0,189,2042 0/0:52,0:52:99:0,147,1619 0/1:27,15:42:99:415,0,737 0/0:57,0:57:99:0,153,1670 15 23060899 . A C 560.16 . AC=23;AF=0.274;AN=84;BaseQRankSum=-13.511;DP=747;Dels=0.00;FS=245.704;HRun=1;HaplotypeScore=0.4744;InbreedingCoeff=-0.3909;MQ=58.06;MQ0=0;MQRankSum=0.600;QD=1.22;ReadPosRankSum=-8.707 GT:AD:DP:GQ:PL 0/0:13,4:17:15.41:0,15,397 0/1:11,5:16:6.04:6,0,292 0/0:10,4:14:29.12:0,29,330 0/1:15,43:58:69.35:69,0,424 0/1:7,24:31:99:170,0,186 0/1:10,19:29:4.70:5,0,238 0/1:7,13:20:5.65:6,0,161 0/0:14,18:32:36.09:0,36,421 0/0:13,4:17:29.12:0,29,335 0/1:3,8:11:22.32:22,0,96 0/1:8,4:12:4.49:4,0,256 0/0:7,4:11:2.70:1,0,219 0/1:4,1:5:20.21:20,0,131 0/0:9,8:17:26.98:0,27,317 0/1:22,17:39:39.15:39,0,664 0/1:3,5:8:9.66:10,0,90 0/1:4,5:9:46.13:46,0,92 0/0:5,7:12:15.03:0,15,173 0/0:7,5:12:17.08:0,17,185 0/0:5,5:10:15.05:0,15,179 0/0:11,11:22:32.13:0,32,370 0/1:2,5:7:24.58:25,0,29 0/1:18,28:46:42.16:42,0,507 0/1:12,17:29:51.75:52,0,252 0/1:12,23:35:6.05:6,0,304 0/0:7,19:26:12.04:0,12,156 0/0:7,3:10:15.05:0,15,182 0/0:8,10:18:24.07:0,24,287 0/1:3,7:10:22.32:22,0,95 0/0:10,6:16:8.40:0,8,346 0/0:4,3:7:12.04:0,12,145 0/1:6,10:16:13.31:13,0,186 0/1:8,5:13:40.91:41,0,177 0/1:5,6:11:15.55:16,0,134 0/1:6,9:15:39.11:39,0,163 0/0:2,3:5:6.02:0,6,72 0/1:6,5:11:8.56:9,0,199 0/1:6,9:15:19.74:20,0,161 0/0:6,6:12:2.27:2,0,199 0/0:8,12:20:3.38:0,3,269 0/0:5,5:10:14.72:0,15,159 0/1:5,8:13:38.18:38,0,155 15 23441118 . T A 30.08 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.704;DP=10206;DS;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=1.4624;InbreedingCoeff=-0.0135;MQ=8.81;MQ0=6280;MQRankSum=-0.061;QD=0.12;ReadPosRankSum=-0.101 GT:AD:DP:GQ:PL 0/0:248,1:250:38.81:0,39,297 0/0:249,0:249:65.82:0,66,537 0/0:243,0:243:53.71:0,54,405 0/0:250,0:250:99:0,242,1803 0/0:250,0:250:99:0,262,1962 0/0:250,0:250:99:0,149,1135 0/0:250,0:250:99:0,209,1590 0/0:250,0:250:99:0,110,836 0/0:241,1:242:29.85:0,30,228 0/1:207,43:250:76.28:76,0,216 0/0:206,0:207:26.89:0,27,210 0/0:250,0:250:32.87:0,33,258 0/0:250,0:250:41.83:0,42,328 0/0:250,0:250:29.90:0,30,243 0/0:248,0:250:99:0,149,1148 0/0:248,0:249:38.85:0,39,307 0/0:240,0:240:26.95:0,27,225 0/0:250,0:250:23.87:0,24,178 0/0:249,0:250:99:0,104,777 0/0:249,0:250:99:0,131,1017 0/0:250,0:250:99:0,125,947 0/0:249,0:250:47.71:0,48,352 0/0:250,0:250:99:0,224,1693 0/0:249,0:250:99:0,170,1297 0/0:250,0:250:99:0,224,1678 0/0:249,1:250:99:0,134,1022 0/0:250,0:250:11.94:0,12,92 0/0:245,0:245:20.93:0,21,167 0/0:248,0:248:35.85:0,36,280 0/0:243,0:243:53.71:0,54,405 0/0:250,0:250:47.79:0,48,372 0/0:250,0:250:99:0,185,1424 0/0:249,0:250:62.71:0,63,488 0/0:225,0:225:20.91:0,21,162 0/0:250,0:250:29.89:0,30,237 0/0:184,0:184:23.87:0,24,178 0/0:249,0:250:80.54:0,81,600 0/0:247,0:247:20.95:0,21,175 0/0:239,0:239:17.93:0,18,140 0/0:195,0:195:68.82:0,69,593 0/0:203,0:203:32.87:0,33,258 0/0:246,0:247:47.88:0,48,414 15 23445323 . G T 6665.53 . AC=49;AF=0.613;AN=80;BaseQRankSum=-21.700;DP=4656;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.6521;InbreedingCoeff=-0.0391;MQ=8.88;MQ0=3345;MQRankSum=10.090;QD=1.74;ReadPosRankSum=1.397 GT:AD:DP:GQ:PL 0/1:56,82:138:43.77:307,0,44 0/1:53,33:87:53.06:84,0,53 0/1:56,25:81:11.70:12,0,65 1/1:89,108:197:96:842,96,0 1/1:43,135:178:71.97:623,72,0 1/1:61,39:100:9.31:257,9,0 0/1:87,19:106:41.35:41,0,41 1/1:57,49:106:30:269,30,0 0/1:45,24:69:14.68:65,0,15 0/1:53,18:71:1.76:0,3,25 1/1:39,23:62:2.31:161,2,0 0/1:84,35:119:50.09:50,0,100 0/1:76,27:103:73.71:124,0,74 0/1:71,31:103:44.07:148,0,44 1/1:192,56:249:0.31:162,0,0 0/1:94,29:123:8.67:115,0,9 1/1:39,39:79:32.99:286,33,0 1/1:47,33:80:26.99:235,27,0 0/1:128,51:179:76.73:98,0,77 0/1:94,102:196:20.07:355,0,20 1/1:79,51:130:17.99:153,18,0 1/1:75,23:98:3:27,3,0 0/0:172,2:174:5.99:0,6,50 1/1:33,59:92:51.01:450,51,0 0/1:69,42:111:53.02:131,0,53 0/1:50,33:83:47.06:128,0,47 0/1:40,32:74:29.39:29,0,121 0/1:57,23:80:66.74:67,0,154 1/1:68,51:119:32.98:284,33,0 1/1:41,42:83:18:157,18,0 1/1:46,64:110:32.98:282,33,0 1/1:86,79:166:41.98:361,42,0 0/1:58,30:88:8.69:109,0,9 0/0:66,5:71:12:0,12,105 ./. 0/0:62,7:69:3:0,3,25 0/0:118,23:141:29.96:0,30,250 0/1:58,43:101:8.68:110,0,9 ./. 0/0:62,18:80:8.99:0,9,77 0/1:47,31:78:97.39:143,0,97 0/0:92,15:107:14.97:0,15,121 15 23445354 . C G 978.19 . AC=18;AF=0.220;AN=82;BaseQRankSum=8.337;DP=5500;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.3973;InbreedingCoeff=-0.0174;MQ=9.75;MQ0=3407;MQRankSum=2.069;QD=0.50;ReadPosRankSum=0.368 GT:AD:DP:GQ:PL 0/1:160,22:182:23.08:23,0,311 0/1:80,37:117:2.70:3,0,134 0/1:91,23:114:11.68:89,0,12 0/0:246,4:250:95.98:0,96,836 0/0:225,4:229:53.98:0,54,468 0/0:139,0:139:26.99:0,27,233 0/0:160,0:160:18.01:0,18,160 0/0:103,5:108:30.01:0,30,270 0/0:73,3:76:9:0,9,80 0/0:74,5:79:3:0,3,25 0/0:67,4:71:26.98:0,27,232 0/1:107,21:128:55.08:77,0,55 0/0:104,18:122:6.30:0,6,208 0/1:94,13:108:47.07:47,0,126 0/0:242,6:250:32.99:0,33,284 0/0:135,4:140:17.99:0,18,156 0/0:98,1:99:30:0,30,263 0/0:89,5:94:21.01:0,21,188 0/1:155,32:188:98.41:100,0,98 0/1:200,38:238:67.72:68,0,171 0/0:158,5:163:23.97:0,24,200 0/0:97,4:102:6:0,6,53 0/0:216,6:222:6:0,6,53 0/0:145,4:149:53.99:0,54,470 0/1:114,41:156:59.03:59,0,84 0/1:74,20:94:5.67:6,0,137 1/1:80,16:96:17.96:145,18,0 0/1:67,28:95:23.36:160,0,23 0/0:114,3:117:21:0,21,183 0/0:104,2:106:11.99:0,12,104 0/0:106,10:116:26.99:0,27,232 0/0:193,8:201:32.97:0,33,279 0/0:82,3:87:14.99:0,15,129 0/1:59,14:73:17.67:44,0,18 0/0:106,2:108:2.99:0,3,24 0/1:71,13:85:17.69:18,0,19 0/0:139,5:144:26.98:0,27,230 0/0:102,2:104:14.98:0,15,128 ./. 0/1:63,28:93:17.62:65,0,18 0/1:57,18:75:94.39:94,0,164 1/1:100,28:128:17.97:148,18,0 15 23445448 . A G 33514.87 . AC=31;AF=0.369;AN=84;BaseQRankSum=18.108;DP=7478;DS;Dels=0.00;FS=32.723;HRun=1;HaplotypeScore=2.8118;InbreedingCoeff=-0.2781;MQ=18.89;MQ0=2781;MQRankSum=2.387;QD=6.58;ReadPosRankSum=3.093 GT:AD:DP:GQ:PL 0/1:185,43:231:99:392,0,2011 0/1:144,76:220:99:1097,0,1498 0/1:137,44:181:99:573,0,1521 0/1:68,181:249:99:2982,0,342 1/1:40,198:238:99:3897,420,0 0/1:174,59:233:99:746,0,2016 0/0:223,0:223:99:0,369,3466 0/1:106,56:162:99:900,0,1014 0/0:128,0:128:99:0,207,1928 0/0:146,0:146:99:0,159,1481 0/1:77,31:108:99:509,0,601 0/1:132,40:172:99:528,0,1329 0/0:220,1:221:99:0,339,3434 0/1:86,43:129:99:666,0,747 0/0:234,0:235:99:0,369,3554 0/0:179,0:179:99:0,252,2336 0/1:92,54:146:99:821,0,893 0/1:107,49:156:99:739,0,1256 0/1:170,52:223:99:618,0,1836 0/1:194,48:242:99:549,0,2031 0/1:168,66:236:99:1057,0,1646 0/1:94,45:139:99:573,0,1082 0/0:243,0:243:99:0,408,3800 1/1:45,161:206:99:3492,354,0 0/1:125,94:220:99:1562,0,1007 0/1:93,58:152:99:1087,0,880 0/1:58,63:121:99:957,0,397 0/1:102,46:148:99:655,0,869 0/1:100,101:201:99:1843,0,395 1/1:51,108:159:99:2076,207,0 0/1:112,71:183:99:1224,0,995 0/1:114,124:238:99:2210,0,744 0/1:85,44:129:99:650,0,807 0/0:104,0:104:99:0,144,1352 0/0:134,1:135:99:0,149,1615 0/0:143,0:144:99:0,198,1919 0/0:207,0:208:99:0,273,2726 0/1:113,46:159:99:654,0,886 0/0:135,0:135:99:0,171,1624 0/0:137,0:137:99:0,225,2051 0/1:82,29:112:99:457,0,795 0/0:147,0:147:99:0,198,1810 15 25330550 . T A 142515.89 . 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C A 5979.83 . 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A G 25691.66 . 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A G 3636.77 . 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G A 119.77 . 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T C 5401.73 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.073;DP=10362;DS;Dels=0.00;FS=1.470;HRun=0;HaplotypeScore=4.2017;InbreedingCoeff=-0.0244;MQ=55.87;MQ0=16;MQRankSum=2.956;QD=11.47;ReadPosRankSum=-0.925 GT:AD:DP:GQ:PL 0/0:250,0:250:99:0,692,8327 0/0:250,0:250:99:0,701,8356 0/0:250,0:250:99:0,692,8352 0/0:250,0:250:99:0,713,8480 0/0:250,0:250:99:0,701,8535 0/0:250,0:250:99:0,713,8738 0/0:249,0:250:99:0,662,8238 0/0:248,0:248:99:0,671,8240 0/0:250,0:250:99:0,662,7978 0/0:250,0:250:99:0,680,8162 0/0:250,0:250:99:0,680,8193 0/0:249,0:250:99:0,662,8032 0/0:218,0:218:99:0,590,7057 0/0:249,0:250:99:0,698,8456 0/0:250,0:250:99:0,701,8242 0/0:248,0:248:99:0,698,8371 0/0:249,0:250:99:0,680,8187 0/0:250,0:250:99:0,683,8214 0/0:249,1:250:99:0,656,8120 0/0:250,0:250:99:0,698,8355 0/0:250,0:250:99:0,680,8241 0/0:250,0:250:99:0,689,8214 0/0:250,0:250:99:0,695,8434 0/0:250,0:250:99:0,692,8543 0/0:250,0:250:99:0,695,8465 0/0:250,0:250:99:0,680,8317 0/0:202,0:202:99:0,569,6798 0/0:250,0:250:99:0,698,8356 0/0:250,0:250:99:0,683,8246 0/0:250,0:250:99:0,683,8239 0/0:224,0:225:99:0,632,7615 0/0:250,0:250:99:0,662,8083 0/0:250,0:250:99:0,674,8164 0/0:250,0:250:99:0,704,8458 0/0:250,0:250:99:0,680,8254 0/0:250,0:250:99:0,680,8199 0/0:250,0:250:99:0,674,8125 0/0:250,0:250:99:0,659,7961 0/0:249,0:250:99:0,686,8250 0/1:137,113:250:99:2984,0,3913 0/1:130,91:221:99:2418,0,3526 0/0:250,0:250:99:0,686,8265 15 25451418 . A G 5816.08 . AC=2;AF=0.024;AN=84;BaseQRankSum=7.186;DP=10369;DS;Dels=0.00;FS=6.721;HRun=1;HaplotypeScore=3.7818;InbreedingCoeff=-0.0244;MQ=55.77;MQ0=16;MQRankSum=4.886;QD=12.19;ReadPosRankSum=-0.507 GT:AD:DP:GQ:PL 0/0:250,0:250:99:0,677,8186 0/0:250,0:250:99:0,701,8418 0/0:250,0:250:99:0,692,8334 0/0:246,0:246:99:0,701,8445 0/0:250,0:250:99:0,704,8634 0/0:250,0:250:99:0,701,8730 0/0:250,0:250:99:0,665,8377 0/0:250,0:250:99:0,683,8384 0/0:250,0:250:99:0,677,8110 0/0:246,0:246:99:0,677,8103 0/0:248,1:250:99:0,668,8120 0/0:250,0:250:99:0,674,8204 0/0:223,0:224:99:0,617,7373 0/0:250,0:250:99:0,692,8342 0/0:250,0:250:99:0,716,8343 0/0:250,0:250:99:0,698,8348 0/0:250,0:250:99:0,686,8271 0/0:250,0:250:99:0,680,8200 0/0:249,1:250:99:0,665,7959 0/0:250,0:250:99:0,701,8382 0/0:250,0:250:99:0,668,8099 0/0:249,0:249:99:0,692,8292 0/0:250,0:250:99:0,692,8472 0/0:250,0:250:99:0,689,8599 0/0:250,0:250:99:0,716,8756 0/0:249,0:250:99:0,674,8393 0/0:207,0:207:99:0,572,6845 0/0:249,0:250:99:0,692,8303 0/0:250,0:250:99:0,686,8210 0/0:250,0:250:99:0,689,8327 0/0:222,0:222:99:0,623,7549 0/0:249,1:250:99:0,662,8094 0/0:250,0:250:99:0,665,8097 0/0:249,0:249:99:0,692,8379 0/0:249,0:249:99:0,674,8218 0/0:250,0:250:99:0,671,8157 0/0:248,1:250:99:0,659,7969 0/0:250,0:250:99:0,680,8206 0/0:250,0:250:99:0,695,8386 0/1:135,115:250:99:3226,0,3916 0/1:135,92:227:99:2590,0,3659 0/0:250,0:250:99:0,665,8126 15 25460760 . G A 8980.79 . AC=3;AF=0.036;AN=84;BaseQRankSum=-6.213;DP=9255;DS;Dels=0.00;FS=0.223;HRun=0;HaplotypeScore=3.5682;InbreedingCoeff=0.6543;MQ=57.07;MQ0=5;MQRankSum=3.244;QD=21.13;ReadPosRankSum=0.673 GT:AD:DP:GQ:PL 0/0:215,1:217:99:0,545,6985 0/0:217,1:218:99:0,549,6766 0/0:220,0:220:99:0,614,7377 0/0:205,0:205:99:0,575,7519 0/0:216,0:216:99:0,620,8115 0/0:203,0:203:99:0,563,7290 0/0:225,0:225:99:0,599,7800 0/0:201,1:202:99:0,507,6914 0/0:219,1:220:99:0,557,7159 0/0:233,0:233:99:0,647,7782 0/0:235,1:236:99:0,629,7635 0/0:213,0:213:99:0,599,7185 0/0:234,0:234:99:0,599,7261 0/0:236,0:236:99:0,656,7913 0/0:250,0:250:99:0,698,8338 0/0:222,0:222:99:0,584,7029 0/0:216,0:216:99:0,590,7044 1/1:1,194:195:99:6352,501,0 0/1:131,97:230:99:2629,0,3643 0/0:237,0:237:99:0,656,7953 0/0:239,0:240:99:0,647,7715 0/0:207,0:207:99:0,560,6795 0/0:201,0:201:99:0,566,7638 0/0:206,0:206:99:0,557,7285 0/0:205,0:205:99:0,578,7537 0/0:215,0:215:99:0,581,7578 0/0:212,0:212:99:0,554,6792 0/0:223,0:224:99:0,620,7374 0/0:232,0:232:99:0,614,7389 0/0:218,0:218:99:0,593,7088 0/0:227,0:227:99:0,620,7471 0/0:217,2:219:99:0,559,7163 0/0:207,0:207:99:0,572,6963 0/0:219,0:219:99:0,599,7214 0/0:214,0:214:99:0,557,6879 0/0:194,0:194:99:0,535,6396 0/0:238,0:240:99:0,659,7792 0/0:220,0:220:99:0,581,7021 0/0:243,0:243:99:0,680,8034 0/0:228,0:228:99:0,626,7444 0/0:226,0:226:99:0,599,7204 0/0:230,0:230:99:0,614,7423 15 25481267 . G A 2855.42 . 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T A 2381.13 . 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G A 319.29 . 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C T 81661.06 . 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C T 68717.16 . 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G A 41946.15 . 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T C 653.75 . 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G T 104626.44 . 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T G 3405.10 . 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G A 4249.28 . AC=4;AF=0.048;AN=84;BaseQRankSum=-10.329;DP=1946;Dels=0.00;FS=14.547;HRun=0;HaplotypeScore=1.0244;InbreedingCoeff=-0.0500;MQ=59.30;MQ0=0;MQRankSum=-1.949;QD=14.26;ReadPosRankSum=0.556 GT:AD:DP:GQ:PL 0/0:28,0:28:75.22:0,75,901 0/0:29,0:30:84.25:0,84,1013 0/0:27,0:27:78.22:0,78,936 0/1:53,49:102:99:1391,0,1695 0/0:137,0:137:99:0,382,4889 0/0:83,0:83:99:0,238,3070 0/0:55,0:56:99:0,153,1935 0/0:48,0:48:99:0,135,1731 0/0:26,0:27:75.22:0,75,905 0/0:29,0:29:84.25:0,84,1019 0/0:28,0:28:81.24:0,81,973 0/0:31,0:31:93.26:0,93,1111 0/0:24,0:24:66.20:0,66,800 0/0:36,0:37:99:0,108,1315 0/0:78,0:78:99:0,223,2650 0/0:34,0:34:96.29:0,96,1164 0/0:31,0:31:93.27:0,93,1113 0/0:32,0:32:93.28:0,93,1127 0/0:56,1:57:99:0,156,1875 0/0:53,0:53:99:0,150,1840 0/0:55,0:55:99:0,156,1841 0/0:41,0:41:99:0,123,1454 0/1:72,66:138:99:1869,0,2200 0/0:56,0:56:99:0,162,2086 0/0:74,0:74:99:0,211,2727 0/0:66,0:66:99:0,190,2436 0/1:13,13:26:99:380,0,368 0/0:28,0:28:84.22:0,84,999 0/1:11,20:32:99:608,0,261 0/0:34,0:34:96.27:0,96,1145 0/0:30,0:30:90.24:0,90,1046 0/0:49,0:49:99:0,126,1513 0/0:36,0:36:99:0,108,1284 0/0:27,0:27:75.21:0,75,919 0/0:35,0:35:99:0,102,1183 0/0:34,0:35:99:0,99,1190 0/0:32,0:32:81.23:0,81,983 0/0:35,0:35:99:0,102,1238 0/0:43,0:43:99:0,123,1451 0/0:29,0:29:84.25:0,84,1007 0/0:30,0:30:90.27:0,90,1088 0/0:43,0:43:99:0,123,1483 15 28358331 . C T 659.10 . 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T A 391.59 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.934;DP=3780;DS;Dels=0.00;FS=2.591;HRun=0;HaplotypeScore=0.4320;InbreedingCoeff=-0.0124;MQ=14.20;MQ0=2516;MQRankSum=-1.078;QD=2.20;ReadPosRankSum=1.350 GT:AD:DP:GQ:PL 0/0:69,0:69:33.03:0,33,331 0/0:69,0:69:33.04:0,33,346 0/0:56,0:56:45.05:0,45,472 0/0:176,0:176:99:0,123,1331 0/1:129,49:178:99:438,0,686 0/0:181,0:181:99:0,132,1406 0/0:177,0:177:96.12:0,96,1000 0/0:154,0:155:99:0,126,1321 0/0:71,0:71:44.98:0,45,416 0/0:57,0:57:39.01:0,39,382 0/0:61,0:61:42.07:0,42,441 0/0:62,0:62:39.09:0,39,433 0/0:44,0:44:24.02:0,24,245 0/0:46,0:46:48.07:0,48,511 0/0:190,0:191:93.13:0,93,978 0/0:45,0:45:36.04:0,36,376 0/0:67,0:67:45.05:0,45,466 0/0:80,0:80:45.01:0,45,443 0/0:91,0:91:81.13:0,81,871 0/0:97,0:97:90.16:0,90,974 0/0:79,0:79:66.05:0,66,669 0/0:54,0:54:48.06:0,48,501 0/0:188,0:188:99:0,144,1481 0/0:146,0:146:80.98:0,81,776 0/0:151,0:151:99:0,117,1262 0/0:141,0:141:99:0,105,1103 0/0:42,0:42:24:0,24,241 0/0:75,0:75:39.05:0,39,413 0/0:64,0:64:42.05:0,42,441 0/0:59,0:60:39.06:0,39,411 0/0:65,0:65:42.02:0,42,413 0/0:93,0:93:50.98:0,51,480 0/0:59,0:59:30.09:0,30,345 0/0:71,0:71:51.06:0,51,540 0/0:52,0:52:42.09:0,42,465 0/0:79,1:80:51.06:0,51,535 0/0:80,0:80:63.01:0,63,623 0/0:53,0:53:18.01:0,18,177 0/0:64,0:64:48.12:0,48,541 0/0:70,0:70:54.02:0,54,534 0/0:58,0:58:24.02:0,24,246 0/0:60,0:60:57.03:0,57,581 15 28475625 . G A 3352.55 . AC=7;AF=0.083;AN=84;BaseQRankSum=-4.942;DP=6822;DS;Dels=0.00;FS=2.203;HRun=0;HaplotypeScore=0.8642;InbreedingCoeff=-0.0909;MQ=14.02;MQ0=4825;MQRankSum=1.786;QD=2.41;ReadPosRankSum=0.465 GT:AD:DP:GQ:PL 0/0:174,0:174:69.16:0,69,740 0/0:131,0:131:78.10:0,78,809 0/0:149,0:149:90.16:0,90,957 0/1:193,53:246:99:569,0,874 0/0:236,0:236:99:0,153,1616 0/0:240,0:241:99:0,147,1628 0/0:216,0:216:99:0,132,1451 0/1:187,51:239:99:544,0,921 0/1:103,27:130:99:356,0,190 0/1:95,26:121:99:306,0,304 0/0:114,0:114:81.18:0,81,873 0/0:162,0:162:99:0,105,1117 0/0:144,0:144:84.16:0,84,889 0/0:123,0:123:78.13:0,78,827 0/0:249,0:250:99:0,153,1604 0/0:97,2:99:60.06:0,60,615 0/1:114,40:154:99:367,0,213 0/0:149,0:151:90.18:0,90,965 0/0:207,1:209:82:0,82,1192 0/0:228,0:228:99:0,147,1584 0/0:213,0:213:93.19:0,93,993 0/0:111,2:113:36.93:0,37,720 0/1:199,51:250:99:524,0,1030 0/0:213,1:214:99:0,138,1512 0/1:200,50:250:99:686,0,616 0/0:201,0:201:99:0,117,1270 0/0:109,0:109:54.15:0,54,609 0/0:114,0:114:84.09:0,84,831 0/0:118,0:118:72.16:0,72,793 0/0:112,1:113:96.21:0,96,1033 0/0:116,0:116:96.17:0,96,1024 0/0:223,0:223:99:0,111,1166 0/0:145,0:145:63.15:0,63,688 0/0:127,0:127:72.10:0,72,760 0/0:117,0:117:93.19:0,93,988 0/0:123,0:123:81.18:0,81,890 0/0:169,0:169:99:0,114,1232 0/0:136,0:136:90.16:0,90,952 0/0:113,0:113:93.15:0,93,1004 0/0:100,0:100:99:0,99,1058 0/0:106,0:106:75.15:0,75,807 0/0:133,1:135:87.17:0,87,938 15 28517436 . T C 14906.97 . AC=41;AF=0.488;AN=84;BaseQRankSum=-3.241;DP=1434;Dels=0.00;FS=13.664;HRun=0;HaplotypeScore=0.5633;InbreedingCoeff=-0.9535;MQ=54.37;MQ0=0;MQRankSum=-15.595;QD=10.53;ReadPosRankSum=-0.046 GT:AD:DP:GQ:PL 0/1:17,21:38:99:585,0,411 0/1:15,18:33:99:492,0,409 0/1:16,13:29:99:297,0,459 0/1:34,12:46:99:260,0,1016 0/1:27,11:38:99:274,0,776 0/1:20,15:35:99:413,0,570 0/1:16,14:30:99:372,0,451 0/1:14,15:29:99:368,0,428 0/1:18,5:23:98.07:98,0,564 0/1:16,12:28:99:315,0,387 0/1:18,11:29:99:256,0,547 0/1:24,16:40:99:390,0,696 0/1:8,11:19:99:298,0,227 0/1:16,14:31:99:379,0,443 0/1:38,45:83:99:1211,0,998 0/1:14,18:32:99:514,0,383 0/1:31,7:38:96.45:96,0,975 0/0:19,0:19:54.16:0,54,640 0/1:33,24:58:99:476,0,899 0/1:30,30:61:99:796,0,805 0/1:26,6:32:91.78:92,0,710 0/1:13,6:19:99:150,0,384 0/1:32,23:55:99:658,0,918 0/1:10,9:19:99:223,0,308 0/1:19,17:36:99:507,0,548 0/1:19,11:30:99:309,0,545 0/1:9,13:22:99:324,0,261 0/1:19,11:30:99:246,0,563 0/1:19,8:27:99:189,0,582 0/1:21,19:40:99:498,0,608 0/1:18,9:27:99:192,0,523 0/1:22,21:43:99:496,0,544 0/1:19,7:26:99:153,0,549 0/1:12,9:21:99:204,0,370 0/1:16,13:29:99:325,0,442 0/1:15,10:25:99:252,0,424 0/1:28,13:41:99:298,0,817 0/1:17,14:31:99:357,0,456 0/1:20,11:31:99:257,0,569 0/1:24,9:33:99:207,0,687 0/1:15,13:28:99:349,0,456 0/1:22,28:50:99:729,0,586 15 28769142 . C T 1076.36 . AC=6;AF=0.103;AN=58;BaseQRankSum=-5.380;DP=2569;Dels=0.00;FS=32.901;HRun=0;HaplotypeScore=0.5193;InbreedingCoeff=0.9284;MQ=12.54;MQ0=1798;MQRankSum=-2.083;QD=5.41;ReadPosRankSum=0.985 GT:AD:DP:GQ:PL ./. 0/0:58,0:59:41.99:0,42,382 0/0:60,0:60:27.02:0,27,274 0/0:122,0:122:99:0,105,1119 ./. 1/1:27,44:71:39.02:372,39,0 1/1:16,51:67:48.04:482,48,0 1/1:21,40:61:36:336,36,0 0/0:61,0:61:41.99:0,42,401 0/0:36,0:36:3.01:0,3,40 0/0:40,0:40:20.97:0,21,175 ./. ./. ./. 0/0:183,0:183:99:0,117,1201 0/0:45,0:45:17.98:0,18,167 ./. 0/0:57,0:57:59.99:0,60,551 0/0:69,1:70:54.04:0,54,567 0/0:86,0:87:72.06:0,72,729 0/0:89,0:89:54:0,54,492 0/0:63,0:63:45:0,45,424 0/0:100,0:100:90.08:0,90,931 ./. 0/0:82,0:82:63.10:0,63,718 ./. ./. ./. 0/0:44,0:44:18:0,18,169 ./. ./. ./. 0/0:60,0:60:30.01:0,30,275 0/0:77,0:77:87.01:0,87,833 0/0:44,0:44:30:0,30,274 0/0:57,0:58:53.97:0,54,484 0/0:84,0:84:42.05:0,42,441 0/0:75,0:75:60:0,60,564 0/0:52,0:52:35.96:0,36,300 0/0:64,0:64:68.99:0,69,644 0/0:53,0:53:53.98:0,54,489 0/0:40,0:40:14.99:0,15,127 15 30008856 . C A 84251.18 . AC=84;AF=1.000;AN=84;BaseQRankSum=1.731;DP=2505;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9087;InbreedingCoeff=-0.0000;MQ=59.16;MQ0=0;MQRankSum=1.717;QD=33.63;ReadPosRankSum=1.077 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1584,126,0 1/1:0,49:49:99:1644,132,0 1/1:0,54:54:99:1895,153,0 1/1:0,88:88:99:3039,241,0 1/1:0,89:89:99:3086,244,0 1/1:0,79:80:99:2876,220,0 1/1:0,83:83:99:2863,223,0 1/1:0,77:77:99:2619,202,0 1/1:0,40:40:99:1356,108,0 1/1:0,46:46:99:1577,126,0 1/1:0,42:42:99:1467,117,0 1/1:0,40:40:99:1410,114,0 1/1:0,48:48:99:1518,120,0 1/1:0,38:38:96.29:1188,96,0 1/1:0,163:163:99:5216,418,0 1/1:1,33:34:96.30:1184,96,0 1/1:0,49:49:99:1728,138,0 1/1:0,66:66:99:2266,181,0 1/1:0,97:97:99:3130,247,0 1/1:0,70:70:99:2104,166,0 1/1:0,58:58:99:1879,147,0 1/1:0,42:42:99:1373,108,0 1/1:1,95:96:99:3178,247,0 1/1:0,81:81:99:2686,205,0 1/1:0,88:88:99:3074,238,0 1/1:0,82:83:99:2777,217,0 1/1:0,25:25:72.22:886,72,0 1/1:0,42:42:99:1439,114,0 1/1:0,24:24:63.20:793,63,0 1/1:0,41:41:99:1411,114,0 1/1:0,37:37:99:1307,108,0 1/1:0,78:78:99:2465,193,0 1/1:0,55:55:99:1848,147,0 1/1:0,48:48:99:1622,129,0 1/1:0,49:49:99:1679,132,0 1/1:0,38:38:99:1373,111,0 1/1:0,81:81:99:2554,202,0 1/1:0,45:45:99:1489,120,0 1/1:0,42:42:99:1475,120,0 1/1:0,49:49:99:1636,129,0 1/1:0,55:55:99:1819,141,0 1/1:0,49:49:99:1737,138,0 15 30008889 . G A 54491.15 . 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T G 6243.83 . AC=4;AF=0.048;AN=84;BaseQRankSum=19.120;DP=3548;Dels=0.00;FS=27.787;HRun=3;HaplotypeScore=1.4253;InbreedingCoeff=-0.0500;MQ=59.45;MQ0=0;MQRankSum=0.435;QD=14.03;ReadPosRankSum=-0.025 GT:AD:DP:GQ:PL 0/0:63,0:63:99:0,172,2049 0/0:59,0:59:99:0,162,1939 0/0:46,0:46:99:0,123,1500 0/0:181,1:183:99:0,438,5721 0/0:170,0:170:99:0,448,5489 0/0:180,0:180:99:0,460,5793 0/0:159,0:159:99:0,421,5163 0/0:150,1:152:99:0,406,4896 0/0:53,0:53:99:0,147,1756 0/0:44,0:44:99:0,120,1404 0/0:61,0:61:99:0,168,2042 0/0:64,0:64:99:0,187,2185 0/0:45,0:46:99:0,129,1539 0/0:59,0:59:99:0,153,1860 0/0:230,0:230:99:0,575,7010 0/0:50,0:50:99:0,138,1621 0/0:82,0:82:99:0,226,2721 0/1:17,22:39:99:698,0,491 0/0:78,0:78:99:0,211,2567 0/0:65,0:65:99:0,181,2164 0/0:89,1:90:99:0,238,2889 0/0:51,0:51:99:0,129,1596 0/0:194,0:196:99:0,496,6117 0/1:70,62:132:99:1933,0,1876 0/1:75,54:129:99:1653,0,2072 0/1:78,67:145:99:1959,0,2091 0/0:42,1:43:99:0,123,1464 0/0:58,0:59:99:0,153,1849 0/0:46,1:47:99:0,126,1505 0/0:52,0:53:99:0,153,1816 0/0:49,0:49:99:0,141,1641 0/0:70,0:71:99:0,184,2256 0/0:44,0:44:99:0,126,1521 0/0:63,0:63:99:0,168,2006 0/0:54,0:54:99:0,159,1879 0/0:58,0:58:99:0,144,1775 0/0:65,0:65:99:0,168,2002 0/0:73,0:73:99:0,199,2365 0/0:50,0:50:99:0,144,1710 0/0:77,0:77:99:0,196,2395 0/0:54,0:54:99:0,144,1755 0/0:62,0:62:99:0,177,2107 15 30659641 . C T 150.67 . 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C T 23434.22 . AC=54;AF=1.000;AN=54;BaseQRankSum=0.026;DP=3398;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3715;InbreedingCoeff=-0.0000;MQ=12.89;MQ0=2487;MQRankSum=1.709;QD=9.43;ReadPosRankSum=1.780 GT:AD:DP:GQ:PL ./. 1/1:21,48:69:78.11:814,78,0 1/1:36,31:68:66.08:638,66,0 1/1:65,99:164:99:1599,165,0 1/1:88,69:157:99:1343,138,0 ./. 1/1:34,60:94:93.09:903,93,0 1/1:42,80:122:99:993,102,0 1/1:21,50:71:66.08:660,66,0 1/1:28,63:91:99:1053,105,0 ./. ./. 1/1:24,38:63:48.06:480,48,0 ./. 1/1:69,131:200:99:2039,207,0 ./. 1/1:53,45:99:63.07:614,63,0 1/1:27,52:79:63.06:594,63,0 ./. ./. ./. 1/1:20,44:65:63.07:597,63,0 ./. 1/1:46,57:103:69.07:681,69,0 1/1:58,61:119:99:1037,108,0 1/1:43,73:117:99:1018,108,0 1/1:10,40:50:42.04:404,42,0 1/1:22,58:80:93.11:913,93,0 ./. 1/1:23,48:71:69.08:673,69,0 1/1:20,64:84:99:1160,120,0 ./. 1/1:23,53:76:66.08:660,66,0 1/1:27,49:77:54.09:590,54,0 ./. 1/1:18,59:77:78.11:792,78,0 1/1:9,75:84:93.10:904,93,0 ./. 1/1:22,47:69:66.08:637,66,0 1/1:24,32:56:75.08:737,75,0 1/1:21,58:79:90.11:900,90,0 ./. 15 30665280 . TCA T 9966.69 . 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T G 3986.46 . 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C T 709 . 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T C 42744.17 . 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G A 1520.79 . 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C T 7697.95 . AC=30;AF=0.357;AN=84;BaseQRankSum=-16.717;DP=866;Dels=0.00;FS=1.830;HRun=1;HaplotypeScore=0.4771;InbreedingCoeff=-0.1409;MQ=58.98;MQ0=0;MQRankSum=1.450;QD=14.50;ReadPosRankSum=0.101 GT:AD:DP:GQ:PL 0/1:13,14:27:99:337,0,306 1/1:0,12:12:33.09:393,33,0 0/1:12,8:20:99:233,0,362 0/1:9,4:13:99:110,0,261 0/0:24,0:24:54.18:0,54,759 0/0:19,0:19:48.16:0,48,664 0/0:11,0:11:33.11:0,33,454 0/0:17,0:17:42.14:0,42,582 0/1:11,15:26:99:402,0,267 0/1:6,8:14:99:212,0,191 0/1:14,5:19:99:130,0,405 0/0:23,0:23:60.19:0,60,778 0/0:15,0:15:36.12:0,36,482 0/1:7,9:16:99:279,0,224 0/1:35,30:65:99:721,0,907 0/0:10,0:10:30.10:0,30,383 1/1:0,13:13:36.10:427,36,0 0/0:26,0:26:66.20:0,66,838 0/0:37,0:37:90.28:0,90,1183 0/0:40,0:40:99:0,108,1389 0/1:28,16:44:99:410,0,784 0/0:20,0:20:48.16:0,48,641 1/1:0,18:18:39.12:519,39,0 0/1:7,4:11:99:110,0,215 0/1:8,3:11:90.54:91,0,229 0/0:13,0:13:30.10:0,30,426 0/1:4,6:10:95.58:190,0,96 0/1:11,6:17:99:177,0,309 0/1:9,3:12:84.61:85,0,252 0/0:31,0:31:75.25:0,75,1002 0/0:18,0:18:48.16:0,48,632 0/1:18,12:30:99:329,0,525 0/0:18,0:18:39.13:0,39,513 0/1:6,8:14:99:198,0,196 0/0:13,0:13:30.10:0,30,401 0/1:14,16:30:99:449,0,370 1/1:0,30:30:63.20:828,63,0 0/1:15,8:23:99:198,0,450 0/1:10,7:17:99:203,0,279 0/1:3,7:10:89.40:188,0,89 0/1:6,9:15:99:235,0,151 0/1:6,8:14:99:246,0,183 15 31818608 . C A 5.96 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.129;DP=386;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4723;InbreedingCoeff=-0.0301;MQ=58.59;MQ0=0;MQRankSum=1.018;QD=0.99;ReadPosRankSum=0.615 GT:AD:DP:GQ:PL 0/0:5,0:5:12.03:0,12,136 0/0:12,0:12:30.08:0,30,349 0/0:4,0:4:9.02:0,9,98 0/0:19,0:19:48.15:0,48,611 0/0:20,0:20:57.17:0,57,714 0/0:7,0:7:21.04:0,21,244 0/0:5,0:5:12.01:0,12,142 0/0:9,0:9:27.08:0,27,337 0/0:9,0:9:24.05:0,24,288 0/0:4,0:4:12.01:0,12,124 0/0:8,0:8:24.06:0,24,280 0/0:6,0:6:12.04:0,12,150 0/0:10,0:10:24.07:0,24,285 0/0:10,0:10:30.09:0,30,368 0/0:27,1:29:63.20:0,63,806 0/0:6,0:6:18.05:0,18,207 0/0:6,0:6:18.06:0,18,220 0/0:2,0:2:6.01:0,6,66 0/0:9,0:9:21.06:0,21,253 0/0:12,0:12:33.09:0,33,407 0/0:14,0:14:36.11:0,36,437 0/0:8,0:8:18.04:0,18,203 0/0:22,0:22:54.15:0,54,685 0/0:12,0:12:27.05:0,27,304 0/0:10,0:10:24.05:0,24,274 0/0:11,0:11:24.08:0,24,310 0/0:8,0:8:24.08:0,24,299 0/0:14,0:14:39.11:0,39,460 0/0:4,0:4:12.01:0,12,122 0/0:5,0:5:12.04:0,12,151 0/0:4,0:4:12.04:0,12,155 0/0:13,0:13:36.09:0,36,431 0/0:9,0:9:27.07:0,27,318 0/0:3,0:3:6.02:0,6,75 0/0:8,0:8:18.05:0,18,207 0/0:8,0:8:21.06:0,21,250 0/0:11,0:11:27.07:0,27,314 0/0:7,0:7:12.02:0,12,130 0/0:8,0:8:21.06:0,21,259 0/1:4,2:6:50.72:51,0,82 0/0:2,0:2:3.01:0,3,40 0/0:7,0:7:18.06:0,18,232 15 31862240 . C T 914.26 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.397;DP=1830;Dels=0.00;FS=5.234;HRun=0;HaplotypeScore=2.0454;InbreedingCoeff=-0.0244;MQ=59.00;MQ0=0;MQRankSum=1.579;QD=13.25;ReadPosRankSum=1.226 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,108,1347 0/0:24,0:24:69.21:0,69,868 0/0:38,0:38:99:0,102,1286 0/0:93,0:93:99:0,235,3130 0/0:75,0:75:99:0,202,2694 0/0:36,0:36:99:0,99,1275 0/0:54,0:54:99:0,138,1853 0/0:46,0:46:99:0,126,1678 0/0:22,0:22:60.17:0,60,734 0/0:32,0:32:87.27:0,87,1081 0/0:33,0:33:96.26:0,96,1177 0/0:34,0:34:96.24:0,96,1160 0/0:34,0:34:93.30:0,93,1208 0/0:31,0:31:90.28:0,90,1131 0/0:117,0:117:99:0,280,3540 0/0:49,0:49:99:0,135,1723 0/0:27,0:27:75.23:0,75,934 0/0:25,0:25:69.19:0,69,840 0/0:53,0:53:99:0,135,1718 0/0:62,0:62:99:0,175,2188 0/0:69,0:69:99:0,178,2206 0/0:39,0:39:99:0,108,1351 0/0:76,0:76:99:0,205,2658 0/0:38,0:38:99:0,102,1348 0/0:77,0:77:99:0,187,2512 0/0:45,0:45:99:0,111,1496 0/0:22,0:22:66.17:0,66,794 0/0:23,0:23:60.16:0,60,715 0/0:33,0:33:99:0,99,1227 0/0:38,0:38:99:0,102,1273 0/0:36,0:36:93.28:0,93,1161 0/0:64,0:64:99:0,171,2133 0/0:43,0:43:99:0,108,1369 0/0:26,0:26:75.22:0,75,923 0/0:24,0:24:72.23:0,72,915 0/0:37,0:37:96.30:0,96,1226 0/0:55,0:55:99:0,141,1746 0/0:30,0:30:84.25:0,84,1027 0/0:30,0:30:81.25:0,81,1017 0/1:20,15:35:99:398,0,613 0/1:13,21:34:99:579,0,347 0/0:30,0:30:90.27:0,90,1104 15 32455467 . G A 607.54 . AC=2;AF=0.048;AN=42;BaseQRankSum=2.174;DP=662;Dels=0.00;FS=3.586;HRun=0;HaplotypeScore=0.5421;InbreedingCoeff=-0.0519;MQ=24.68;MQ0=236;MQRankSum=-2.563;QD=7.50;ReadPosRankSum=-1.361 GT:AD:DP:GQ:PL ./. ./. ./. ./. ./. ./. ./. 0/0:25,0:25:45.10:0,45,512 ./. 0/0:16,0:16:21.02:0,21,196 ./. 0/0:17,0:17:33.05:0,33,328 0/0:18,0:18:30.04:0,30,290 0/0:17,0:17:36.04:0,36,343 ./. ./. ./. 0/0:17,0:17:39.05:0,39,385 ./. 0/0:33,0:33:60.11:0,60,630 0/0:35,0:36:57.08:0,57,579 0/0:21,0:21:33.05:0,33,344 ./. 0/0:19,0:19:36.08:0,36,407 0/0:50,0:50:99:0,99,1052 ./. 0/0:24,0:24:48.06:0,48,465 ./. 0/0:19,0:19:30.03:0,30,279 ./. ./. 0/0:24,0:24:45.06:0,45,466 ./. 0/1:15,28:43:99:524,0,207 0/1:29,9:38:99:140,0,471 0/0:17,0:17:30.04:0,30,287 0/0:43,0:43:69.10:0,69,701 0/0:17,0:17:30.05:0,30,299 0/0:35,0:35:78.13:0,78,801 ./. 0/0:11,0:11:12.01:0,12,111 ./. 15 32908431 . GTGA G 205.35 . AC=8;AF=0.095;AN=84;BaseQRankSum=4.915;DP=2714;FS=1911.591;HRun=0;HaplotypeScore=223.0729;InbreedingCoeff=-0.1298;MQ=44.15;MQ0=131;MQRankSum=-0.006;QD=0.41;ReadPosRankSum=-24.031 GT:AD:DP:GQ:PL 0/0:51,0:48:54.47:0,54,2556 0/0:53,0:52:14.74:0,15,2486 0/0:41,0:38:44.40:0,44,1848 0/0:114,0:109:79.28:0,79,5070 0/0:115,0:109:80.71:0,81,4631 0/1:108,0:97:34.89:35,0,3882 0/0:73,0:65:75.83:0,76,2730 0/0:70,0:63:64.40:0,64,2992 0/0:58,0:57:48.79:0,49,2782 0/0:53,0:49:28.98:0,29,2543 0/0:63,0:61:7.47:0,7,2951 0/0:53,0:50:11.81:0,12,2408 0/0:57,0:54:48.41:0,48,2429 0/1:47,0:45:49.35:49,0,1941 0/0:145,0:139:38.58:0,39,5670 0/0:46,0:43:26.79:0,27,2047 0/0:50,0:46:27.71:0,28,2250 0/0:43,0:41:25.57:0,26,1865 0/1:63,0:54:12.27:12,0,2346 0/0:90,0:83:86.60:0,87,3716 0/1:66,0:61:23.21:23,0,2970 0/0:65,0:60:95.22:0,95,2873 0/0:132,0:121:17.69:0,18,4950 0/0:74,0:68:40.14:0,40,2971 0/0:72,0:66:41.05:0,41,2499 0/1:57,0:52:28.62:29,0,2282 0/1:36,0:34:9.88:10,0,1695 0/0:46,0:44:24.46:0,24,1974 0/0:40,0:37:2.49:1,0,1554 0/0:45,0:45:50.33:0,50,2329 0/0:53,0:49:39.56:0,40,2459 0/0:83,0:80:99:0,133,4458 0/0:60,0:55:71.30:0,71,3036 0/0:60,0:55:1.49:4,0,2368 0/0:52,0:49:29.99:0,30,2146 0/0:51,0:48:68.09:0,68,2356 0/1:51,20:64:99:126,0,2832 0/0:56,0:51:29.80:0,30,2693 0/0:52,0:50:39.33:0,39,2381 0/0:51,0:44:5.58:0,6,2046 0/0:49,0:46:13.62:0,14,2153 0/1:50,0:46:44.53:45,0,1718 15 32908432 . T G 601.25 . AC=16;AF=0.190;AN=84;BaseQRankSum=-27.138;DP=2714;Dels=0.01;FS=1479.414;HRun=2;HaplotypeScore=4.5357;InbreedingCoeff=-0.2442;MQ=44.15;MQ0=131;MQRankSum=-0.894;QD=0.64;ReadPosRankSum=-22.564 GT:AD:DP:GQ:PL 0/0:36,15:51:99:0,102,1098 0/1:38,15:53:25.16:25,0,1102 0/1:26,15:41:8.53:9,0,702 0/0:74,40:114:98.26:0,98,2196 0/0:66,48:115:34.12:0,34,1904 0/0:59,49:108:88.32:0,88,1763 0/0:41,32:73:39.33:0,39,1226 0/0:44,26:70:22.22:0,22,1249 0/0:39,19:58:83.97:0,84,1101 0/0:36,17:53:25.61:0,26,1065 0/1:41,21:63:56.89:57,0,1145 0/1:35,18:53:41.89:42,0,964 0/1:34,23:57:97.48:97,0,964 0/1:28,19:47:99:163,0,784 0/0:88,56:145:3.09:0,3,2460 0/0:29,17:46:7.07:0,7,844 0/0:32,18:50:36.17:0,36,1018 0/0:26,17:43:23.93:0,24,819 0/1:39,24:63:81.59:82,0,947 0/0:57,33:90:99:0,114,1561 0/1:45,21:66:22.13:22,0,1205 0/0:35,30:65:26.41:0,26,1082 0/1:74,58:132:16.42:16,0,2085 0/0:42,32:74:62.68:0,63,1286 0/0:35,37:72:24.12:0,24,1047 0/1:33,24:57:48.42:48,0,989 0/0:23,13:36:58.17:0,58,626 0/1:31,15:46:19.50:20,0,774 0/0:21,19:40:5.94:0,6,582 0/0:35,10:45:74.57:0,75,1084 0/0:36,17:53:48.90:0,49,1015 0/0:61,22:83:99:0,120,1818 0/0:46,14:60:98.64:0,99,1365 0/1:34,26:60:12.61:13,0,995 0/1:29,23:52:31.08:31,0,751 0/0:34,17:51:96.21:0,96,1075 0/0:45,6:51:99:0,117,1314 0/0:40,16:56:41.29:0,41,1258 0/0:36,16:52:24.09:0,24,973 0/1:27,24:51:51.41:51,0,745 0/1:31,18:49:17.88:18,0,879 0/1:28,22:50:65.44:65,0,743 15 32917735 . A G 3308.01 . AC=2;AF=0.024;AN=84;BaseQRankSum=15.285;DP=9402;DS;Dels=0.00;FS=20.451;HRun=0;HaplotypeScore=1.9948;InbreedingCoeff=-0.0244;MQ=27.08;MQ0=2805;MQRankSum=1.053;QD=6.62;ReadPosRankSum=-0.801 GT:AD:DP:GQ:PL 0/0:189,0:189:99:0,313,3324 0/0:226,0:226:99:0,361,3863 0/0:220,0:221:99:0,388,4069 0/0:250,0:250:99:0,442,4547 0/0:250,0:250:99:0,466,4875 0/0:250,0:250:99:0,415,4408 0/0:250,0:250:99:0,454,4758 0/0:250,0:250:99:0,379,3966 0/0:222,0:222:99:0,334,3416 0/0:194,0:194:99:0,310,3247 0/0:197,0:197:99:0,322,3296 0/0:201,0:201:99:0,304,3100 0/0:200,0:200:99:0,322,3462 0/0:209,0:209:99:0,346,3647 0/0:250,0:250:99:0,306,3017 0/0:184,0:185:99:0,283,2985 0/0:234,0:235:99:0,406,4204 0/0:187,0:188:99:0,298,3128 0/0:250,0:250:99:0,307,3212 0/0:246,0:246:99:0,433,4604 0/1:153,97:250:99:1470,0,1855 0/0:211,0:211:99:0,337,3557 0/0:250,0:250:99:0,427,4451 0/0:250,0:250:99:0,349,3658 0/0:250,0:250:99:0,415,4345 0/0:250,0:250:99:0,385,4095 0/0:171,0:171:99:0,310,3270 0/0:197,0:197:99:0,334,3501 0/0:185,0:186:99:0,301,3199 0/0:221,1:222:99:0,361,3830 0/0:214,0:214:99:0,337,3504 0/1:157,92:250:99:1838,0,2370 0/0:224,0:224:99:0,433,4678 0/0:219,0:219:99:0,352,3701 0/0:219,0:219:99:0,349,3662 0/0:238,0:238:99:0,364,3878 0/0:250,0:250:99:0,370,4006 0/0:227,0:227:99:0,370,4035 0/0:227,0:227:99:0,376,3912 0/0:232,0:232:99:0,376,4018 0/0:188,0:188:99:0,304,3220 0/0:213,0:213:99:0,343,3598 15 32921855 . G C 1108.75 . 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C T 5779.49 . 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C T 209.05 . 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G A 10485.89 . 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C T 35.45 . 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A G 180.57 . 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T C 1891.85 . 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C G 788.19 . 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G A 33634.91 . 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G A 3387.62 . AC=3;AF=0.036;AN=84;BaseQRankSum=-13.383;DP=3705;Dels=0.00;FS=9.061;HRun=0;HaplotypeScore=1.7097;InbreedingCoeff=-0.0370;MQ=59.24;MQ0=0;MQRankSum=0.798;QD=12.50;ReadPosRankSum=0.684 GT:AD:DP:GQ:PL 0/0:65,0:65:99:0,190,2354 0/0:66,0:66:99:0,196,2438 0/1:34,12:46:99:281,0,1064 0/0:182,0:182:99:0,536,7097 0/0:159,0:159:99:0,469,6237 0/0:132,0:132:99:0,385,5163 0/0:109,0:109:99:0,316,4225 0/0:138,0:138:99:0,397,5295 0/0:66,0:66:99:0,193,2413 0/0:63,0:63:99:0,178,2241 0/0:72,0:72:99:0,211,2648 0/0:68,0:68:99:0,196,2412 0/0:38,0:38:99:0,111,1400 0/0:56,0:56:99:0,159,1972 0/0:238,0:238:99:0,656,8316 0/0:61,0:61:99:0,181,2238 0/0:71,0:71:99:0,199,2501 0/0:68,0:68:99:0,199,2472 0/0:99,0:99:99:0,283,3445 0/0:125,0:125:99:0,337,4274 0/0:92,0:92:99:0,247,3097 0/0:72,0:72:99:0,199,2492 0/0:194,0:194:99:0,566,7661 0/1:58,46:104:99:1275,0,1939 0/0:109,0:109:99:0,322,4343 0/1:58,63:121:99:1832,0,1900 0/0:61,0:61:99:0,181,2245 0/0:53,0:53:99:0,153,1893 0/0:66,0:66:99:0,193,2402 0/0:69,0:69:99:0,199,2497 0/0:50,0:50:99:0,147,1865 0/0:93,0:93:99:0,271,3434 0/0:57,0:57:99:0,169,2107 0/0:73,0:73:99:0,214,2649 0/0:78,0:78:99:0,220,2782 0/0:58,0:58:99:0,169,2112 0/0:113,0:113:99:0,322,4025 0/0:60,0:60:99:0,168,2102 0/0:73,0:73:99:0,220,2718 0/0:72,0:72:99:0,214,2619 0/0:49,0:49:99:0,144,1785 0/0:65,0:65:99:0,190,2368 15 34646791 . T G 1300.16 . AC=18;AF=0.214;AN=84;BaseQRankSum=-38.278;DP=3948;DS;Dels=0.00;FS=695.785;HRun=4;HaplotypeScore=2.7096;InbreedingCoeff=-0.2900;MQ=58.57;MQ0=0;MQRankSum=-3.510;QD=0.77;ReadPosRankSum=-7.375 GT:AD:DP:GQ:PL 0/0:34,34:68:2.05:2,0,986 0/0:41,27:68:85.52:0,86,1251 0/1:36,22:58:29.89:30,0,904 0/0:99,83:182:27.08:0,27,2927 0/0:104,57:162:99:0,144,3252 0/0:78,56:134:14.61:0,15,2291 0/0:77,42:119:99:0,153,2308 0/0:84,51:136:99:0,132,2571 0/0:32,30:62:29.10:0,29,910 0/0:46,31:77:37.20:0,37,1306 0/0:42,31:75:58.08:0,58,1238 0/1:39,32:71:10.70:11,0,1130 0/0:20,20:40:4.91:0,5,620 0/0:36,29:65:1.90:0,2,1096 0/1:136,104:242:99:306,0,3805 0/1:39,23:62:48.41:48,0,1134 0/1:43,34:77:27.28:27,0,1277 0/1:38,31:69:61.95:62,0,1023 0/1:65,43:108:99:112,0,1829 0/0:80,52:132:99:0,110,2374 0/1:59,44:103:62.62:63,0,1563 0/0:52,24:76:69.39:0,69,1506 0/1:119,95:215:99:153,0,3446 0/0:65,35:102:99:0,122,1921 0/0:67,45:113:99:0,131,2005 0/0:74,43:117:93.30:0,93,2248 0/1:42,29:71:25.74:26,0,1166 0/1:35,30:65:23.75:24,0,1018 0/1:41,31:74:13.62:14,0,1211 0/1:38,33:72:14.76:15,0,1077 0/1:37,25:62:4.08:4,0,1084 0/0:90,38:128:99:0,174,2849 0/0:45,23:68:97.60:0,98,1329 0/0:49,32:82:15.03:0,15,1456 0/0:42,36:80:49.25:0,49,1217 0/1:36,27:63:95.74:96,0,1012 0/1:67,57:124:99:323,0,1802 0/0:34,23:57:40.22:0,40,1037 0/0:40,26:66:67.85:0,68,1209 0/1:46,34:80:90.15:90,0,1378 0/0:34,27:61:27.39:0,27,968 0/1:39,23:62:58.08:58,0,990 15 34656260 . A G 5280.64 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.664;DP=6547;DS;Dels=0.00;FS=3.762;HRun=2;HaplotypeScore=2.4638;InbreedingCoeff=-0.0244;MQ=59.35;MQ0=0;MQRankSum=-0.252;QD=12.85;ReadPosRankSum=-0.331 GT:AD:DP:GQ:PL 0/0:143,0:143:99:0,379,4814 0/0:147,0:147:99:0,409,5143 0/0:113,0:113:99:0,316,3974 0/0:180,0:180:99:0,521,6649 0/0:184,0:184:99:0,530,6827 0/0:175,0:175:99:0,503,6631 0/0:166,0:166:99:0,479,6218 0/0:175,0:175:99:0,491,6398 0/0:138,0:138:99:0,376,4706 0/0:119,0:119:99:0,343,4289 0/0:132,0:132:99:0,373,4681 0/0:151,0:151:99:0,415,5231 0/0:132,1:133:99:0,373,4670 0/0:121,0:121:99:0,328,4180 0/0:250,0:250:99:0,707,8820 0/0:102,0:102:99:0,292,3593 0/0:116,1:117:99:0,301,4029 0/0:127,0:127:99:0,364,4573 0/1:118,90:209:99:2354,0,3487 0/1:98,104:202:99:2927,0,2933 0/0:217,0:217:99:0,581,7353 0/0:189,0:189:99:0,518,6515 0/0:190,0:190:99:0,563,7322 0/0:166,0:166:99:0,470,6176 0/0:195,0:195:99:0,551,7216 0/0:188,0:188:99:0,521,6791 0/0:107,0:107:99:0,307,3821 0/0:139,0:139:99:0,397,4974 0/0:129,1:130:99:0,364,4566 0/0:128,0:128:99:0,370,4637 0/0:125,0:125:99:0,349,4402 0/0:199,0:200:99:0,539,6826 0/0:151,0:151:99:0,430,5348 0/0:143,0:143:99:0,421,5214 0/0:123,0:123:99:0,349,4394 0/0:157,0:158:99:0,421,5379 0/0:219,0:219:99:0,599,7478 0/0:149,0:149:99:0,424,5255 0/0:148,0:148:99:0,415,5217 0/0:153,0:153:99:0,433,5403 0/0:107,0:107:99:0,313,3911 0/0:137,0:137:99:0,391,4886 15 34673973 . C T 176.04 . AC=13;AF=0.361;AN=36;BaseQRankSum=3.776;DP=711;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0532;InbreedingCoeff=0.1835;MQ=6.03;MQ0=634;MQRankSum=0.584;QD=1.25;ReadPosRankSum=-1.736 GT:AD:DP:GQ:PL 1/1:5,6:11:6:53,6,0 1/1:5,5:10:3:27,3,0 ./. ./. 0/0:16,6:22:3:0,3,27 ./. ./. ./. 0/0:10,2:12:3.01:0,3,30 0/0:5,10:15:3:0,3,27 ./. ./. ./. ./. ./. ./. ./. ./. 0/1:18,7:25:17.67:18,0,44 0/0:20,7:27:3:0,3,27 0/0:22,6:28:6:0,6,53 0/1:9,6:15:20.67:21,0,21 0/1:25,7:32:41.35:41,0,41 0/0:10,3:14:3:0,3,27 1/1:8,8:16:3:27,3,0 ./. ./. ./. ./. 1/1:4,7:11:3:27,3,0 1/1:11,10:21:6:53,6,0 0/0:26,0:26:3:0,3,27 ./. ./. ./. ./. 0/0:10,7:17:6:0,6,53 ./. 0/0:15,0:15:11.98:0,12,102 ./. ./. 0/0:12,0:12:6:0,6,53 15 34678911 . C G 64.27 . AC=8;AF=0.105;AN=76;BaseQRankSum=9.240;DP=3031;DS;Dels=0.00;FS=202.307;HRun=1;HaplotypeScore=0.3920;InbreedingCoeff=0.0920;MQ=10.11;MQ0=2142;MQRankSum=-0.251;QD=0.13;ReadPosRankSum=-0.421 GT:AD:DP:GQ:PL 0/1:0,52:52:1.76:27,3,0 0/0:33,24:57:2.68:1,0,163 0/0:70,0:71:42.01:0,42,373 0/0:40,61:101:2:2,0,349 0/1:34,51:85:14.35:14,0,250 0/0:52,24:76:12.34:0,12,293 0/0:83,0:83:60.01:0,60,532 0/0:48,20:68:21.01:0,21,187 0/0:38,17:55:15:0,15,133 ./. 0/0:52,13:65:27.01:0,27,240 0/0:40,10:50:27:0,27,238 0/0:29,12:41:12:0,12,107 0/0:29,0:29:15:0,15,133 0/0:188,0:188:96.03:0,96,854 0/0:79,0:79:33.01:0,33,293 0/1:58,15:73:17.34:17,0,231 0/1:27,23:50:11.67:12,0,92 0/1:49,30:80:53.02:53,0,131 0/0:80,19:99:51.01:0,51,451 0/0:62,33:95:33.01:0,33,293 0/0:56,9:65:30:0,30,265 0/1:0,76:76:1.76:27,3,0 0/0:72,11:83:26.33:0,26,402 0/0:101,0:101:63.02:0,63,559 0/0:27,23:50:3:0,3,27 0/0:56,14:70:12.34:0,12,294 0/0:64,14:78:18.01:0,18,160 0/0:35,13:48:12:0,12,107 0/0:35,20:55:30.01:0,30,267 0/0:57,17:74:24.01:0,24,213 0/0:74,40:114:5.64:0,6,398 0/1:23,35:58:5.67:6,0,139 0/0:113,0:114:75.02:0,75,665 0/0:84,0:84:45.01:0,45,398 0/0:102,0:102:66.02:0,66,585 0/0:74,20:94:2.68:1,0,163 ./. 0/0:36,14:50:15:0,15,133 ./. 0/1:17,15:33:20.67:21,0,21 ./. 15 34678930 . A C 8.01 . AC=1;AF=0.014;AN=74;BaseQRankSum=-2.475;DP=2397;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5744;InbreedingCoeff=-0.0316;MQ=9.97;MQ0=1725;MQRankSum=1.174;QD=0.10;ReadPosRankSum=0.427 GT:AD:DP:GQ:PL 0/0:45,0:45:3:0,3,27 0/0:56,0:56:30.01:0,30,267 0/0:64,0:64:30.01:0,30,267 0/0:72,0:72:24.01:0,24,213 0/0:66,0:66:30.01:0,30,267 0/0:56,0:56:33.01:0,33,293 0/0:54,0:54:33.01:0,33,292 0/0:48,0:48:18.01:0,18,160 0/0:49,0:49:15:0,15,133 ./. 0/0:52,0:52:21.01:0,21,187 0/0:39,0:39:15:0,15,131 0/0:35,0:35:12:0,12,107 0/0:30,0:30:12:0,12,107 0/0:130,0:130:81.02:0,81,717 0/0:62,0:62:27.01:0,27,240 0/0:58,0:58:33.01:0,33,293 0/0:46,0:46:12:0,12,107 0/0:68,1:69:21.01:0,21,187 0/0:76,0:76:39.01:0,39,347 0/0:71,0:72:21.01:0,21,187 0/0:51,0:51:27.01:0,27,240 ./. 0/0:62,0:63:45.01:0,45,400 0/0:76,0:76:45.01:0,45,400 ./. 0/0:63,0:63:42.01:0,42,371 0/0:69,0:69:21.01:0,21,187 0/0:40,0:40:6:0,6,53 0/0:49,0:49:27.01:0,27,240 0/0:57,0:59:15:0,15,133 0/0:77,0:77:42.01:0,42,371 0/0:51,0:51:21:0,21,185 0/0:83,0:83:63.02:0,63,558 0/0:69,0:69:33.01:0,33,293 0/1:66,12:78:52.69:53,0,317 0/0:77,0:77:21:0,21,185 0/0:39,0:39:6:0,6,51 0/0:38,0:38:18.01:0,18,160 ./. 0/0:23,0:23:3:0,3,27 ./. 15 35226784 . C T 436.45 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.750;DP=1104;Dels=0.00;FS=3.692;HRun=1;HaplotypeScore=0.4131;InbreedingCoeff=-0.0244;MQ=59.48;MQ0=0;MQRankSum=0.898;QD=9.49;ReadPosRankSum=2.813 GT:AD:DP:GQ:PL 0/0:28,0:28:78.25:0,78,987 0/0:21,0:21:54.17:0,54,705 0/0:30,0:30:87.28:0,87,1122 0/0:22,0:22:51.15:0,51,694 0/0:18,0:18:48.16:0,48,665 0/0:15,0:15:33.11:0,33,468 0/0:11,0:11:30.10:0,30,415 0/0:19,0:19:54.17:0,54,725 0/0:34,0:34:90.29:0,90,1181 0/0:28,0:29:84.26:0,84,1054 0/0:24,0:24:60.19:0,60,790 0/0:27,0:27:66.21:0,66,863 0/0:31,0:31:84.25:0,84,1075 0/0:22,0:22:60.19:0,60,780 0/0:88,0:88:99:0,235,3031 0/0:17,0:17:42.14:0,42,555 0/0:22,0:22:66.21:0,66,836 0/0:25,0:25:72.23:0,72,932 0/0:30,0:30:84.27:0,84,1090 0/0:36,0:36:90.29:0,90,1170 0/0:48,0:48:99:0,117,1519 0/0:35,0:35:96.30:0,96,1205 0/0:19,0:19:51.17:0,51,698 0/0:19,0:19:57.19:0,57,781 0/0:20,0:20:51.16:0,51,682 0/0:14,0:14:36.12:0,36,491 0/0:25,0:25:66.21:0,66,860 0/0:34,0:34:93.27:0,93,1165 0/0:23,0:23:69.21:0,69,864 0/1:12,8:20:99:230,0,343 0/0:14,0:14:42.13:0,42,539 0/0:41,0:41:99:0,108,1389 0/1:16,10:26:99:269,0,469 0/0:27,0:27:72.23:0,72,948 0/0:18,0:18:54.17:0,54,689 0/0:33,0:33:90.29:0,90,1175 0/0:21,0:21:54.17:0,54,692 0/0:19,0:20:54.17:0,54,690 0/0:27,0:27:75.24:0,75,972 0/0:31,0:31:84.27:0,84,1088 0/0:20,0:20:57.18:0,57,721 0/0:20,0:20:57.18:0,57,732 15 36946303 . C G 5916 . AC=44;AF=0.524;AN=84;BaseQRankSum=-10.613;DP=466;Dels=0.00;FS=16.386;HRun=0;HaplotypeScore=0.2216;InbreedingCoeff=-0.0591;MQ=58.99;MQ0=0;MQRankSum=-0.594;QD=16.48;ReadPosRankSum=1.729 GT:AD:DP:GQ:PL 0/1:8,5:13:99:138,0,182 0/0:12,0:12:27.08:0,27,348 0/1:4,5:9:99:125,0,100 1/1:0,15:15:39.11:479,39,0 1/1:0,9:9:21.07:264,21,0 1/1:0,9:9:24.06:297,24,0 1/1:0,9:9:21.06:274,21,0 0/1:4,5:9:99:157,0,136 0/1:5,2:7:46.93:47,0,139 0/1:5,4:9:91.37:91,0,126 0/1:2,1:3:22.52:23,0,70 0/1:4,4:8:90.30:90,0,132 0/1:6,2:8:46.93:47,0,145 0/0:9,0:9:24.08:0,24,316 0/1:17,16:33:99:338,0,474 0/0:5,0:5:12.04:0,12,151 1/1:0,13:13:33.10:395,33,0 1/1:0,6:6:15.05:185,15,0 1/1:0,10:10:27.08:321,27,0 0/1:10,6:17:99:133,0,329 0/0:18,0:18:45.14:0,45,575 0/1:12,5:17:99:128,0,342 0/1:3,2:5:59.73:60,0,107 1/1:0,14:14:39.11:470,39,0 0/1:6,5:11:99:132,0,108 0/1:8,2:10:49.03:49,0,246 0/1:7,2:9:44.31:44,0,200 0/1:7,4:11:99:102,0,207 0/1:8,4:12:95.14:95,0,210 1/1:0,13:13:33.10:404,33,0 1/1:0,4:4:12.03:138,12,0 0/0:23,0:23:54.16:0,54,693 0/1:9,4:13:73.56:74,0,301 0/0:8,0:8:18.06:0,18,242 0/1:6,3:9:61.47:61,0,172 0/0:10,0:10:24.07:0,24,301 0/1:6,5:11:99:128,0,165 1/1:0,14:14:33.08:382,33,0 0/1:5,6:11:99:168,0,161 0/0:13,0:13:33.10:0,33,425 0/0:9,0:9:27.09:0,27,345 0/1:5,3:8:77.15:77,0,172 15 36950061 . C T 105.83 . 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G C 152.81 . AC=11;AF=0.131;AN=84;BaseQRankSum=-11.452;DP=926;Dels=0.00;FS=340.683;HRun=1;HaplotypeScore=0.5350;InbreedingCoeff=-0.1960;MQ=59.06;MQ0=0;MQRankSum=-1.812;QD=0.63;ReadPosRankSum=-10.846 GT:AD:DP:GQ:PL 0/0:8,4:12:21.07:0,21,263 0/0:14,5:19:33.10:0,33,420 0/0:8,3:12:1.57:4,0,239 0/1:23,16:39:44.17:44,0,698 0/1:24,16:40:49.01:49,0,721 0/0:17,7:24:30.07:0,30,374 0/0:22,8:30:44.82:0,45,581 0/0:27,10:37:2.42:1,0,558 0/0:11,6:17:7.40:0,7,319 0/0:9,6:15:2.68:1,0,257 0/1:5,3:8:9.65:10,0,132 0/0:16,2:18:32.82:0,33,377 0/1:9,5:14:9.56:10,0,190 0/1:7,4:11:19.31:19,0,138 0/0:33,19:52:47.45:0,47,883 0/0:6,1:7:12.04:0,12,145 0/0:15,2:17:4.40:0,4,313 0/0:13,4:17:33.10:0,33,405 0/0:32,7:39:72:0,72,844 0/0:32,14:46:62.59:0,63,713 0/1:27,10:37:6.16:6,0,638 0/0:18,7:25:39.08:0,39,467 0/1:19,12:31:38.31:38,0,520 0/0:18,12:30:39.13:0,39,514 0/0:18,6:24:32.33:0,32,423 0/0:18,10:28:16.39:0,16,415 0/0:7,3:10:18.05:0,18,222 0/0:12,4:16:30.09:0,30,368 0/0:13,8:21:24.08:0,24,311 0/1:10,9:19:28.67:29,0,334 0/1:12,6:18:28.52:29,0,258 0/0:29,6:35:1.71:3,0,685 0/0:18,5:23:45.14:0,45,555 0/1:8,4:12:35.74:36,0,219 0/0:9,3:12:24.07:0,24,285 0/0:11,7:18:18.06:0,18,223 0/0:14,5:19:3.60:0,4,378 0/0:9,5:14:24.07:0,24,286 0/1:7,8:15:6.67:7,0,150 0/0:13,4:17:30.08:0,30,354 0/0:10,3:13:30.10:0,30,383 0/0:8,7:15:24.05:0,24,290 15 37026565 . A G 945.05 . 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G T 4123.96 . AC=2;AF=0.024;AN=84;BaseQRankSum=-18.651;DP=5604;DS;Dels=0.00;FS=5.884;HRun=0;HaplotypeScore=1.8883;InbreedingCoeff=-0.0244;MQ=59.52;MQ0=0;MQRankSum=0.368;QD=12.13;ReadPosRankSum=-0.837 GT:AD:DP:GQ:PL 0/0:108,0:108:99:0,298,3819 0/0:120,0:120:99:0,307,3963 0/0:108,0:108:99:0,289,3717 0/0:192,0:192:99:0,533,7214 0/0:181,0:181:99:0,479,6637 0/0:206,0:206:99:0,530,7354 0/0:141,1:142:99:0,338,5084 0/0:157,0:157:99:0,391,5420 0/0:121,0:121:99:0,337,4344 0/0:106,1:107:99:0,283,3644 0/0:102,0:102:99:0,271,3502 0/0:94,0:94:99:0,250,3210 0/0:115,0:115:99:0,310,3942 0/0:115,0:115:99:0,310,4011 0/1:132,117:249:99:3011,0,3818 0/1:51,40:91:99:1113,0,1511 0/0:98,0:98:99:0,274,3522 0/0:114,1:115:99:0,284,4044 0/0:185,0:186:99:0,509,6497 0/0:156,0:156:99:0,388,5054 0/0:155,1:157:99:0,424,5478 0/0:126,0:126:99:0,340,4381 0/0:218,0:218:99:0,569,7818 0/0:154,0:154:99:0,409,5663 0/0:187,0:187:99:0,500,6848 0/0:159,0:159:99:0,433,5948 0/0:67,0:67:99:0,181,2307 0/0:120,0:120:99:0,313,4051 0/0:110,0:110:99:0,301,3866 0/0:114,0:114:99:0,310,4006 0/0:93,0:93:99:0,262,3391 0/0:170,0:170:99:0,439,5693 0/0:125,0:126:99:0,328,4248 0/0:111,0:111:99:0,313,3999 0/0:107,0:107:99:0,292,3743 0/0:108,0:108:99:0,298,3824 0/0:135,0:135:99:0,367,4680 0/0:118,0:118:99:0,334,4263 0/0:106,0:106:99:0,307,3903 0/0:130,0:130:99:0,352,4518 0/0:99,0:99:99:0,286,3607 0/0:126,0:126:99:0,358,4593 15 38233381 . C A 280.53 . 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T C 275.04 . 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T C 659.70 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.973;DP=3428;DS;Dels=0.00;FS=1.641;HRun=1;HaplotypeScore=1.3749;InbreedingCoeff=-0.0120;MQ=59.46;MQ0=0;MQRankSum=0.905;QD=13.19;ReadPosRankSum=0.827 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,141,1745 0/0:60,0:60:99:0,156,1930 0/0:63,0:63:99:0,166,2067 0/0:138,0:138:99:0,349,4415 0/0:123,0:123:99:0,313,3966 0/0:117,0:117:99:0,289,3733 0/0:119,0:119:99:0,298,3811 0/0:102,0:102:99:0,256,3258 0/0:89,0:89:99:0,229,2816 0/0:48,0:48:99:0,135,1644 0/0:50,0:50:99:0,138,1692 0/0:74,0:74:99:0,181,2261 0/0:80,1:82:99:0,217,2664 0/0:69,0:69:99:0,187,2306 0/0:238,0:238:99:0,581,7278 0/0:47,0:47:99:0,129,1569 0/0:57,0:57:99:0,159,1961 0/0:74,0:74:99:0,205,2470 0/0:82,0:82:99:0,214,2633 0/0:83,0:83:99:0,211,2632 0/0:91,0:91:99:0,238,2959 0/0:68,0:68:99:0,175,2178 0/0:129,0:129:99:0,343,4310 0/0:85,0:85:99:0,214,2686 0/0:116,0:116:99:0,292,3676 0/0:108,0:108:99:0,268,3452 0/0:59,0:59:99:0,141,1790 0/1:25,25:50:99:706,0,752 0/0:63,0:63:99:0,166,2044 0/0:60,0:60:99:0,166,2039 0/0:50,0:50:99:0,135,1654 0/0:98,0:98:99:0,223,2875 0/0:50,0:50:99:0,126,1572 0/0:82,0:82:99:0,211,2649 0/0:52,0:52:99:0,132,1650 0/0:79,0:79:99:0,208,2562 0/0:78,0:78:99:0,202,2488 0/0:76,0:76:99:0,196,2434 0/0:60,0:60:99:0,162,1980 0/0:60,0:60:99:0,156,1926 0/0:75,0:75:99:0,193,2367 0/0:68,0:68:99:0,184,2260 15 38746370 . G A 573.12 . 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A G 14574.86 . AC=26;AF=0.310;AN=84;BaseQRankSum=-8.109;DP=1483;Dels=0.00;FS=11.522;HRun=0;HaplotypeScore=0.8059;InbreedingCoeff=0.1083;MQ=59.32;MQ0=0;MQRankSum=0.044;QD=17.99;ReadPosRankSum=0.477 GT:AD:DP:GQ:PL 0/1:12,16:28:99:463,0,335 0/0:37,0:37:99:0,108,1329 0/0:25,2:27:27.48:0,27,826 0/1:23,26:49:99:706,0,611 0/1:32,11:45:99:347,0,725 0/0:55,0:55:99:0,132,1752 0/0:48,0:48:99:0,114,1511 0/0:39,0:39:99:0,102,1298 0/0:35,0:35:90.28:0,90,1128 0/0:34,0:34:90.28:0,90,1125 0/0:28,0:28:75.23:0,75,933 0/0:21,1:22:26.75:0,27,677 0/0:32,0:32:84.25:0,84,1037 0/0:32,1:33:44.26:0,44,987 0/1:39,47:87:99:1138,0,999 0/0:22,0:22:60.18:0,60,732 0/1:9,22:31:99:620,0,217 1/1:0,39:39:99:1245,105,0 1/1:0,58:58:99:1775,147,0 1/1:0,51:51:99:1643,141,0 0/1:21,37:58:99:927,0,529 0/0:37,0:37:99:0,99,1227 0/1:19,23:42:99:598,0,509 0/1:18,11:29:99:262,0,479 0/0:47,0:47:99:0,126,1615 0/1:15,18:33:99:517,0,437 0/0:17,0:17:48.15:0,48,588 0/0:28,0:28:69.20:0,69,864 0/0:25,0:25:66.21:0,66,828 1/1:1,24:25:38.51:712,39,0 0/1:14,6:20:99:157,0,433 0/1:20,33:53:99:821,0,494 0/1:16,14:30:99:365,0,496 0/0:29,0:29:81.25:0,81,995 0/1:8,8:16:99:239,0,234 0/0:31,0:31:81.24:0,81,1016 0/1:12,26:39:99:655,0,337 1/1:0,27:27:72.20:847,72,0 0/0:20,1:21:22.39:0,22,664 0/1:18,11:29:99:239,0,441 0/0:24,2:26:27.46:0,27,811 0/1:10,11:21:99:299,0,281 15 38800158 . G A 741.46 . AC=3;AF=0.036;AN=84;BaseQRankSum=-3.055;DP=1019;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4267;InbreedingCoeff=-0.0371;MQ=59.05;MQ0=0;MQRankSum=0.739;QD=11.41;ReadPosRankSum=0.430 GT:AD:DP:GQ:PL 0/1:16,11:27:99:262,0,488 0/1:10,11:21:99:288,0,277 0/0:19,0:19:51.15:0,51,605 0/0:18,0:18:51.15:0,51,650 0/0:27,1:28:53.59:0,54,989 0/0:19,0:19:57.18:0,57,735 0/0:11,0:11:30.09:0,30,385 0/0:12,0:12:36.12:0,36,473 0/0:22,0:22:66.19:0,66,770 0/1:8,9:17:99:268,0,226 0/0:23,0:23:66.18:0,66,771 0/0:15,0:15:42.12:0,42,487 0/0:33,0:33:90.23:0,90,1031 0/0:19,0:19:57.17:0,57,680 0/0:64,0:64:99:0,181,2111 0/0:18,0:18:48.14:0,48,579 0/0:19,0:19:57.14:0,57,655 0/0:21,0:21:63.19:0,63,747 0/0:45,0:45:99:0,126,1454 0/0:42,0:42:99:0,117,1395 0/0:38,0:39:99:0,111,1323 0/0:28,0:28:81.21:0,81,919 0/0:24,0:24:72.23:0,72,925 0/0:13,0:13:39.07:0,39,462 0/0:16,0:16:48.15:0,48,638 0/0:16,0:16:45.14:0,45,570 0/0:12,0:12:27.08:0,27,326 0/0:21,0:21:63.16:0,63,721 0/0:13,0:13:39.12:0,39,461 0/0:25,0:25:69.18:0,69,805 0/0:13,0:13:30.09:0,30,369 0/0:60,0:61:99:0,165,1934 0/0:33,0:33:99:0,99,1155 0/0:23,0:23:63.19:0,63,748 0/0:22,0:22:60.18:0,60,728 0/0:26,0:26:75.22:0,75,883 0/0:41,0:41:99:0,114,1357 0/0:19,0:19:48.11:0,48,545 0/0:17,0:17:48.13:0,48,552 0/0:25,0:25:75.21:0,75,881 0/0:20,0:20:60.16:0,60,684 0/0:19,0:19:51.15:0,51,608 15 39880818 . C T 616.47 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.197;DP=1820;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.2680;InbreedingCoeff=-0.0120;MQ=59.26;MQ0=0;MQRankSum=-0.183;QD=14.34;ReadPosRankSum=1.479 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,102,1274 0/0:36,0:36:99:0,102,1257 0/0:38,0:38:96.27:0,96,1182 0/0:65,0:65:99:0,190,2446 0/0:57,0:57:99:0,157,2071 0/0:57,0:57:99:0,153,1982 0/0:27,0:27:81.23:0,81,1043 0/0:39,0:39:99:0,108,1422 0/0:41,0:41:99:0,120,1432 0/0:41,0:41:99:0,111,1361 0/0:31,0:31:90.25:0,90,1100 0/0:38,0:38:99:0,111,1378 0/0:32,0:32:93.28:0,93,1146 0/0:42,0:42:99:0,114,1415 0/0:135,0:135:99:0,355,4318 0/0:26,0:26:72.16:0,72,852 0/0:38,0:38:99:0,111,1339 0/0:32,0:32:87.26:0,87,1074 0/0:72,0:72:99:0,189,2269 0/0:60,0:60:99:0,163,2058 0/0:72,0:72:99:0,186,2275 0/0:31,0:31:81.25:0,81,1018 0/0:52,0:52:99:0,153,2008 0/0:35,0:35:99:0,105,1367 0/0:35,0:35:99:0,99,1301 0/0:39,0:39:99:0,102,1343 0/0:42,0:42:99:0,120,1479 0/0:32,0:32:87.27:0,87,1090 0/0:32,0:32:81.25:0,81,1015 0/0:38,2:40:66.80:0,67,1290 0/0:33,0:34:93.27:0,93,1125 0/0:49,0:49:99:0,126,1608 0/1:20,23:43:99:663,0,500 0/0:29,0:29:87.27:0,87,1076 0/0:42,0:42:99:0,114,1415 0/0:30,0:30:81.25:0,81,1009 0/0:42,0:42:99:0,111,1331 0/0:43,0:43:99:0,117,1445 0/0:27,0:27:75.23:0,75,945 0/0:44,0:44:99:0,123,1499 0/0:32,0:32:90.26:0,90,1106 0/0:48,0:48:99:0,132,1655 15 39880822 . A G 8106.19 . AC=17;AF=0.202;AN=84;BaseQRankSum=5.305;DP=1772;Dels=0.00;FS=27.887;HRun=0;HaplotypeScore=1.3224;InbreedingCoeff=-0.1062;MQ=59.26;MQ0=0;MQRankSum=-0.273;QD=13.18;ReadPosRankSum=0.230 GT:AD:DP:GQ:PL 0/0:39,0:40:99:0,102,1224 0/0:35,0:35:99:0,102,1194 0/0:37,0:37:96.24:0,96,1153 0/1:35,23:58:99:715,0,980 0/0:53,0:53:99:0,153,1805 0/0:55,0:55:99:0,153,1852 0/0:26,0:26:78.20:0,78,892 0/0:37,0:37:99:0,102,1207 0/1:23,18:41:99:466,0,693 0/0:37,0:37:99:0,102,1204 0/1:12,17:29:99:457,0,337 0/0:37,0:37:99:0,108,1255 0/0:27,0:27:81.23:0,81,954 0/0:43,0:43:99:0,114,1377 0/0:133,0:133:99:0,352,4172 0/1:18,10:28:99:279,0,531 0/0:40,0:40:99:0,117,1371 0/1:17,15:32:99:412,0,457 0/0:68,0:69:99:0,180,2119 0/0:57,0:57:99:0,153,1849 0/1:29,35:64:99:981,0,764 1/1:0,31:31:84.25:1024,84,0 0/1:21,27:48:99:837,0,567 0/1:21,12:33:99:327,0,654 0/1:22,15:37:99:406,0,616 0/1:22,16:38:99:413,0,634 0/0:42,0:42:99:0,126,1474 0/0:31,0:31:87.26:0,87,1054 0/0:32,0:32:84.24:0,84,1001 0/0:40,0:41:99:0,111,1332 0/0:32,0:33:93.25:0,93,1091 0/0:47,0:48:99:0,126,1512 0/0:45,0:45:99:0,135,1550 0/1:17,14:31:99:391,0,509 0/0:41,0:41:99:0,114,1363 0/1:22,10:32:99:252,0,647 0/1:20,18:40:99:480,0,554 0/1:29,15:44:99:366,0,837 0/0:28,0:28:78.23:0,78,938 0/0:45,0:45:99:0,135,1590 0/1:17,12:29:99:301,0,490 0/0:45,0:45:99:0,126,1507 15 39885301 . T C 7165.59 . AC=9;AF=0.107;AN=84;BaseQRankSum=6.431;DP=2795;Dels=0.00;FS=43.087;HRun=0;HaplotypeScore=1.9204;InbreedingCoeff=-0.1200;MQ=59.31;MQ0=0;MQRankSum=-1.628;QD=11.52;ReadPosRankSum=0.094 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,147,1788 0/0:54,0:54:99:0,147,1784 0/0:54,0:54:99:0,147,1784 0/0:111,0:111:99:0,292,3637 0/0:96,0:96:99:0,259,3219 0/1:40,32:72:99:949,0,1245 0/0:62,0:62:99:0,175,2163 0/1:35,31:66:99:858,0,1013 0/0:59,0:59:99:0,169,2025 0/0:51,0:51:99:0,147,1730 0/1:30,18:48:99:521,0,852 0/0:66,0:66:99:0,190,2266 0/0:44,0:44:99:0,117,1404 0/0:43,0:43:99:0,126,1497 0/1:101,82:183:99:2151,0,2730 0/1:28,18:46:99:444,0,766 0/0:54,0:54:99:0,156,1860 0/0:61,0:61:99:0,165,1991 0/0:71,0:71:99:0,187,2256 0/0:84,0:84:99:0,226,2736 0/0:67,0:67:99:0,166,2013 0/0:65,0:65:99:0,168,2044 0/0:98,0:98:99:0,268,3335 0/0:84,0:84:99:0,214,2673 0/0:76,0:76:99:0,196,2516 0/0:73,1:74:99:0,157,2358 0/1:30,25:56:99:617,0,816 0/1:20,16:36:99:435,0,611 0/0:57,0:57:99:0,159,1900 0/0:67,0:67:99:0,190,2271 0/0:50,0:50:99:0,138,1659 0/0:85,0:85:99:0,238,2879 0/1:41,17:58:99:410,0,1179 0/0:62,0:62:99:0,169,2072 0/0:48,0:48:99:0,132,1601 0/0:55,0:55:99:0,159,1925 0/0:72,0:72:99:0,202,2421 0/0:67,0:67:99:0,190,2266 0/1:27,30:57:99:781,0,777 0/0:70,0:70:99:0,208,2481 0/0:53,0:53:99:0,150,1811 0/0:60,0:60:99:0,159,1936 15 40265799 . A G 200779.18 . AC=83;AF=0.988;AN=84;BaseQRankSum=8.717;DP=5804;DS;Dels=0.00;FS=1.715;HRun=1;HaplotypeScore=1.6395;InbreedingCoeff=-0.0120;MQ=59.56;MQ0=0;MQRankSum=0.874;QD=34.59;ReadPosRankSum=1.529 GT:AD:DP:GQ:PL 1/1:1,83:84:99:2919,206,0 1/1:0,131:131:99:4491,349,0 1/1:0,76:76:99:2818,223,0 1/1:0,250:250:99:8864,659,0 1/1:0,209:209:99:7617,563,0 1/1:0,207:208:99:7618,563,0 1/1:0,211:211:99:7607,560,0 1/1:0,212:214:99:7500,551,0 1/1:0,112:112:99:3944,310,0 1/1:0,131:131:99:4489,352,0 1/1:0,118:118:99:4162,328,0 1/1:0,102:102:99:3482,274,0 1/1:0,88:88:99:3193,253,0 1/1:0,77:77:99:2725,217,0 1/1:0,248:250:99:8561,683,0 1/1:0,76:76:99:2715,211,0 1/1:0,99:99:99:3436,271,0 1/1:0,98:98:99:3441,271,0 1/1:1,191:192:99:6306,469,0 1/1:0,185:185:99:6214,484,0 1/1:0,171:171:99:5779,457,0 1/1:0,95:95:99:3372,268,0 1/1:0,244:245:99:8939,659,0 1/1:0,172:172:99:6413,479,0 1/1:0,185:185:99:6566,479,0 1/1:0,202:202:99:6780,497,0 1/1:0,71:71:99:2518,202,0 0/1:53,53:106:99:1468,0,1499 1/1:0,82:82:99:2808,217,0 1/1:0,93:93:99:3326,259,0 1/1:0,85:85:99:3052,241,0 1/1:0,209:209:99:6978,536,0 1/1:0,102:102:99:3456,271,0 1/1:0,108:108:99:3705,292,0 1/1:0,102:102:99:3557,280,0 1/1:0,107:108:99:3790,298,0 1/1:0,174:174:99:5733,457,0 1/1:0,129:129:99:4484,352,0 1/1:0,118:118:99:4138,328,0 1/1:0,116:116:99:4159,331,0 1/1:0,99:99:99:3347,265,0 1/1:0,120:120:99:4311,337,0 15 40396519 . AGG A 1585.38 . AC=20;AF=0.238;AN=84;BaseQRankSum=-6.776;DP=2561;DS;FS=468.684;HRun=2;HaplotypeScore=199.1994;InbreedingCoeff=-0.3357;MQ=57.46;MQ0=1;MQRankSum=-2.191;QD=1.18;ReadPosRankSum=-25.868 GT:AD:DP:GQ:PL 0/0:38,0:37:31.50:0,32,1534 0/1:41,0:41:5.61:6,0,1345 0/0:31,0:31:24.94:0,25,1029 0/1:113,0:112:99:335,0,2661 0/1:110,0:110:99:263,0,2474 0/1:100,0:94:10.23:10,0,2444 0/1:75,0:72:99:150,0,1870 0/0:98,0:94:83.94:0,84,2977 0/1:56,0:56:52.97:53,0,2079 0/1:43,0:43:46.87:47,0,1551 0/0:46,1:47:16.06:0,16,1239 0/0:48,0:48:1.82:3,0,1258 0/1:37,0:37:41.44:41,0,1125 0/1:46,0:46:60.94:61,0,1357 0/1:142,0:143:99:102,0,4305 0/1:48,0:48:99:133,0,1306 0/0:48,0:48:28.21:0,28,1826 0/0:29,0:29:36.08:0,36,1164 0/0:77,1:79:52.87:0,53,2700 0/0:87,0:87:61.01:0,61,3262 0/0:55,0:55:44.96:0,45,1390 0/0:65,0:65:38.84:0,39,2317 0/1:123,2:125:99:209,0,2749 0/1:79,0:72:55.91:56,0,2038 0/0:81,0:74:7.79:0,8,2321 0/0:59,0:57:26.59:0,27,2068 0/0:32,1:33:3.46:0,3,1089 0/0:43,0:43:70.28:0,70,1634 0/0:42,0:42:26.57:0,27,1626 0/1:47,0:47:79.60:80,0,1180 0/1:36,0:36:3.31:3,0,1336 0/0:91,0:91:99:0,136,4052 0/1:60,0:60:55.69:56,0,1726 0/1:42,0:42:9.66:10,0,1477 0/0:42,0:42:5.06:0,5,1427 0/0:39,0:39:21.98:0,22,1531 0/0:74,1:75:41.37:0,41,2681 0/1:56,0:56:99:115,0,1504 0/1:46,0:46:12.64:13,0,1280 0/0:38,0:38:17.67:0,18,1330 0/0:37,8:45:2.59:1,0,1482 0/1:45,0:45:10.86:11,0,1467 15 40396521 . G A 3032.98 . 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T C 1317.24 . 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A C 3433.01 . 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A G 5890.10 . AC=2;AF=0.024;AN=84;BaseQRankSum=18.445;DP=6475;DS;Dels=0.00;FS=1.902;HRun=1;HaplotypeScore=4.9338;InbreedingCoeff=-0.0244;MQ=59.53;MQ0=0;MQRankSum=-0.186;QD=15.18;ReadPosRankSum=3.568 GT:AD:DP:GQ:PL 0/0:124,0:124:99:0,334,4219 0/0:141,0:141:99:0,385,4852 0/0:126,0:126:99:0,340,4238 0/0:219,0:221:99:0,584,7508 0/0:240,0:240:99:0,626,8247 0/1:96,101:198:99:3053,0,3016 0/0:189,0:189:99:0,530,6963 0/1:96,94:190:99:2837,0,2935 0/0:152,0:152:99:0,397,5017 0/0:139,0:139:99:0,373,4719 0/0:108,0:108:99:0,289,3680 0/0:142,0:142:99:0,385,4868 0/0:95,0:95:99:0,256,3246 0/0:119,0:119:99:0,328,4170 0/0:250,0:250:99:0,677,8505 0/0:100,0:100:99:0,271,3381 0/0:134,0:135:99:0,367,4629 0/0:97,0:97:99:0,274,3393 0/0:204,0:204:99:0,584,7284 0/0:220,0:220:99:0,581,7401 0/0:209,1:211:99:0,554,7087 0/0:111,0:111:99:0,298,3756 0/0:230,0:230:99:0,641,8352 0/0:184,0:184:99:0,485,6381 0/0:221,0:221:99:0,593,7804 0/0:171,0:171:99:0,460,6005 0/0:107,0:107:99:0,292,3666 0/0:135,0:135:99:0,361,4558 0/0:132,0:132:99:0,361,4534 0/0:130,0:130:99:0,346,4400 0/0:131,0:131:99:0,373,4682 0/0:186,0:186:99:0,491,6280 0/0:116,0:117:99:0,313,3961 0/0:123,0:124:99:0,352,4446 0/0:135,0:135:99:0,379,4792 0/0:125,0:125:99:0,352,4447 0/0:229,0:229:99:0,584,7517 0/0:125,0:125:99:0,349,4337 0/0:110,0:110:99:0,313,3907 0/0:129,0:129:99:0,367,4617 0/0:129,0:129:99:0,358,4478 0/0:113,0:113:99:0,313,3986 15 40583560 . G T 852.23 . AC=20;AF=0.313;AN=64;BaseQRankSum=1.348;DP=85;Dels=0.00;FS=4.451;HRun=0;HaplotypeScore=0.1458;InbreedingCoeff=0.1309;MQ=57.57;MQ0=0;MQRankSum=-0.440;QD=18.94;ReadPosRankSum=0.671 GT:AD:DP:GQ:PL ./. ./. 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,77 0/1:1,2:3:29.55:61,0,30 1/1:0,4:4:12.03:135,12,0 0/0:3,0:3:6.02:0,6,81 0/0:4,0:4:9.02:0,9,97 ./. 0/0:2,0:2:6.02:0,6,70 ./. 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.03:0,9,111 0/0:4,0:4:12.03:0,12,137 ./. ./. ./. 0/0:2,0:2:6.02:0,6,66 0/0:2,0:2:6.01:0,6,64 1/1:0,1:1:3.01:33,3,0 ./. 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.02:0,9,97 0/0:1,0:1:3.01:0,3,38 0/1:1,0:1:1.76:0,3,32 ./. 1/1:0,2:2:6.02:75,6,0 1/1:0,1:1:3.01:36,3,0 0/1:2,4:6:55.28:88,0,55 0/0:1,0:1:3.01:0,3,33 0/1:2,2:4:53.90:65,0,54 0/0:4,0:4:9.02:0,9,93 ./. 0/0:3,0:3:9.02:0,9,101 0/0:1,0:1:3.01:0,3,37 1/1:0,6:6:18.05:205,18,0 0/1:3,3:6:77.54:91,0,78 1/1:0,1:1:3.01:37,3,0 0/1:1,2:3:30.96:39,0,31 0/1:1,3:4:25.76:97,0,26 0/1:2,1:3:29.55:30,0,56 15 40585189 . A C 3425.47 . AC=33;AF=0.393;AN=84;BaseQRankSum=-32.528;DP=3306;DS;Dels=0.00;FS=1856.203;HRun=1;HaplotypeScore=2.2873;InbreedingCoeff=-0.6316;MQ=58.35;MQ0=0;MQRankSum=-0.218;QD=1.33;ReadPosRankSum=-21.520 GT:AD:DP:GQ:PL 0/1:47,28:75:4.15:4,0,1397 0/1:30,31:61:99:103,0,880 0/1:25,29:54:44.38:44,0,728 0/1:56,79:135:99:380,0,1706 0/1:56,52:108:99:210,0,1671 0/1:56,58:114:22.27:22,0,1703 0/1:52,56:108:99:159,0,1620 0/1:43,45:89:99:107,0,1215 0/1:35,27:62:99:103,0,978 0/1:20,22:42:9.28:9,0,454 0/1:22,22:44:67.08:67,0,683 0/0:37,36:73:22.55:0,23,1075 0/1:27,16:44:53.44:53,0,825 0/0:30,18:48:12.19:0,12,895 0/1:103,78:181:99:157,0,3027 0/1:28,16:45:54.47:54,0,853 0/1:38,27:65:16.70:17,0,1116 0/1:30,21:51:16.16:16,0,906 0/1:67,47:114:64.69:65,0,1877 0/0:87,63:150:63.17:0,63,2581 0/1:58,52:110:99:117,0,1636 0/1:49,49:98:99:159,0,1371 0/1:57,73:130:99:228,0,1577 0/0:40,31:71:21.97:0,22,1290 0/0:58,42:100:52.27:0,52,1709 0/1:30,40:70:97.81:98,0,871 0/0:30,16:46:57.16:0,57,958 0/1:34,26:60:8.60:9,0,1024 0/1:24,19:43:61.88:62,0,701 0/1:29,28:57:99:134,0,894 0/1:21,27:48:99:123,0,608 0/0:83,58:142:99:0,107,2466 0/1:41,38:79:76.50:76,0,1166 0/0:32,32:64:27.51:0,28,899 0/1:29,32:61:99:122,0,901 0/1:36,36:72:99:101,0,1092 0/1:63,38:101:99:195,0,1882 0/1:41,29:70:99:103,0,1225 0/1:31,27:58:76.11:76,0,902 0/1:24,28:52:99:141,0,711 0/0:31,14:45:25.34:0,25,847 0/1:33,32:66:99:113,0,900 15 40586566 . G T 16.88 . 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A G 10953.49 . 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G A 1089.06 . 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G T 11852.59 . 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C T 5837.23 . 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C T 3821.85 . 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T A 91831.20 . 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T G 88.14 . 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T TGGGGC 8550.20 . 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A G 215.80 . AC=6;AF=0.071;AN=84;BaseQRankSum=-2.456;DP=602;Dels=0.00;FS=5.099;HRun=3;HaplotypeScore=1.3264;InbreedingCoeff=-0.0925;MQ=56.00;MQ0=0;MQRankSum=1.962;QD=2.80;ReadPosRankSum=-1.981 GT:AD:DP:GQ:PL 0/0:16,0:16:42.13:0,42,522 0/0:10,0:10:30.09:0,30,370 0/0:9,0:9:27.09:0,27,338 0/0:20,0:20:60.18:0,60,714 0/0:25,0:25:75.22:0,75,891 0/0:14,0:14:42.13:0,42,523 0/0:12,0:12:27.09:0,27,342 0/0:15,0:16:45.14:0,45,561 0/0:9,1:10:0.90:6,0,260 0/0:10,0:10:30.08:0,30,349 0/0:7,0:7:21.03:0,21,226 0/0:14,0:14:39.12:0,39,476 0/0:8,0:8:18.04:0,18,202 0/0:19,0:19:51.15:0,51,621 0/0:31,0:31:90.23:0,90,1032 0/0:14,0:14:42.09:0,42,471 0/1:8,1:9:6.61:7,0,201 0/1:11,2:13:41.04:41,0,323 0/0:16,0:17:39.09:0,39,452 0/0:20,0:20:60.18:0,60,716 0/0:24,0:24:60.18:0,60,740 0/1:9,4:14:96.14:96,0,257 0/0:21,0:21:63.19:0,63,778 0/0:3,0:3:9.02:0,9,98 0/0:16,0:16:48.13:0,48,577 0/0:10,0:10:30.09:0,30,365 0/0:1,0:1:3.01:0,3,32 0/0:10,0:10:27.08:0,27,331 0/0:11,0:11:33.09:0,33,391 0/1:12,4:16:37.77:38,0,362 0/0:13,0:13:39.12:0,39,457 0/0:30,0:31:75.22:0,75,919 0/0:25,0:25:72.16:0,72,819 0/0:10,0:10:30.09:0,30,364 0/0:12,0:12:36.11:0,36,433 0/0:18,0:18:51.16:0,51,631 0/0:8,1:9:21.06:0,21,255 0/1:10,3:13:69.11:69,0,292 0/0:11,0:11:33.09:0,33,393 0/0:15,0:16:45.14:0,45,555 0/1:9,3:12:64.08:64,0,256 0/0:12,0:12:33.10:0,33,411 15 41099919 . A C 16.34 . 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C T 1656.39 . 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C T 40656.07 . 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C T 1116.80 . 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C T 1422.02 . 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A G 57093.58 . 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G A 20.53 . 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A C 404.15 . 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T C 4135.25 . 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A G 3114.02 . 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C G 17686.07 . 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G A 1174.07 . 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C T 1513.84 . 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T C 107155.64 . 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C T 1692.97 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.695;DP=4724;DS;Dels=0.00;FS=5.970;HRun=1;HaplotypeScore=2.3986;InbreedingCoeff=-0.0120;MQ=59.04;MQ0=0;MQRankSum=1.582;QD=12.83;ReadPosRankSum=1.130 GT:AD:DP:GQ:PL 0/0:91,1:92:99:0,215,3014 0/0:72,0:72:99:0,196,2499 0/0:78,0:78:99:0,208,2644 0/0:204,0:204:99:0,566,7586 0/0:176,0:176:99:0,506,6811 0/0:156,0:157:99:0,418,5665 0/0:128,0:128:99:0,340,4542 0/1:71,61:132:99:1739,0,2089 0/0:73,0:73:99:0,193,2460 0/0:69,0:69:99:0,193,2421 0/0:82,0:82:99:0,226,2806 0/0:82,0:83:99:0,229,2920 0/0:51,0:51:99:0,141,1747 0/0:85,0:85:99:0,238,2992 0/0:234,0:234:99:0,623,7878 0/0:74,1:75:99:0,214,2679 0/0:71,0:71:99:0,202,2538 0/0:64,0:64:99:0,190,2353 0/0:183,0:183:99:0,481,6034 0/0:224,0:224:99:0,572,7338 0/0:214,1:215:99:0,515,6940 0/0:110,0:110:99:0,289,3683 0/0:193,0:193:99:0,509,6893 0/0:130,0:130:99:0,343,4608 0/0:138,0:138:99:0,349,4780 0/0:122,0:123:99:0,307,4158 0/0:62,0:62:99:0,169,2122 0/0:75,0:75:99:0,202,2561 0/0:69,0:69:99:0,187,2370 0/0:71,0:71:99:0,181,2305 0/0:75,0:76:99:0,211,2653 0/0:176,0:176:99:0,454,5858 0/0:124,0:124:99:0,328,4120 0/0:78,0:78:99:0,208,2652 0/0:67,0:67:99:0,181,2289 0/0:91,0:91:99:0,253,3205 0/0:191,0:191:99:0,512,6379 0/0:81,0:81:99:0,217,2771 0/0:69,0:69:99:0,199,2529 0/0:103,0:103:99:0,274,3461 0/0:77,0:77:99:0,190,2444 0/0:72,0:72:99:0,202,2576 15 42120342 . A G 552.69 . AC=4;AF=0.048;AN=84;BaseQRankSum=6.153;DP=362;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.5389;InbreedingCoeff=-0.0751;MQ=57.98;MQ0=0;MQRankSum=0.177;QD=15.35;ReadPosRankSum=-0.084 GT:AD:DP:GQ:PL 0/0:6,0:6:18.05:0,18,215 0/0:11,0:11:33.09:0,33,378 0/0:8,0:8:24.07:0,24,283 0/0:23,0:23:54.17:0,54,664 0/0:18,0:18:48.13:0,48,545 0/0:9,0:9:15.04:0,15,179 0/1:6,8:14:99:246,0,120 0/0:13,0:13:30.08:0,30,356 0/0:14,0:14:36.10:0,36,412 0/0:10,0:10:24.07:0,24,298 0/0:5,0:5:12.03:0,12,138 0/0:6,0:6:12.04:0,12,142 0/0:5,0:5:15.04:0,15,173 0/0:4,0:4:12.04:0,12,142 0/0:15,0:15:39.11:0,39,452 0/0:3,0:3:9.03:0,9,102 0/1:4,3:7:95.36:95,0,119 0/1:4,4:8:95.08:128,0,95 0/0:5,0:5:12.04:0,12,146 0/0:15,0:15:42.12:0,42,489 0/0:10,0:10:24.07:0,24,297 0/0:10,0:10:27.06:0,27,292 0/0:23,1:24:60.17:0,60,712 0/0:17,0:17:42.13:0,42,518 0/0:5,0:5:9.03:0,9,106 0/0:9,0:9:24.07:0,24,285 0/0:2,0:2:6.01:0,6,63 0/0:5,0:5:12.03:0,12,138 0/0:2,0:2:3.01:0,3,36 0/0:5,0:5:15.04:0,15,175 0/1:2,5:7:53.71:169,0,54 0/0:8,0:8:21.05:0,21,233 0/0:7,0:7:21.06:0,21,244 0/0:2,0:2:6.02:0,6,73 0/0:7,0:7:18.05:0,18,217 0/0:4,0:4:9.03:0,9,109 0/0:10,0:10:27.07:0,27,309 0/0:8,0:8:18.05:0,18,204 0/0:7,0:7:18.05:0,18,201 0/0:4,0:4:9.01:0,9,96 0/0:2,0:2:6.01:0,6,61 0/0:8,0:8:21.06:0,21,237 15 42134097 . C T 1994.60 . 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C T 9300.79 . 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C T 386.17 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.047;DP=2912;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.1994;InbreedingCoeff=-0.0120;MQ=59.20;MQ0=0;MQRankSum=-0.228;QD=10.44;ReadPosRankSum=-0.796 GT:AD:DP:GQ:PL 0/1:20,17:37:99:432,0,539 0/0:44,0:44:99:0,120,1360 0/0:38,0:38:99:0,108,1224 0/0:136,0:137:99:0,361,4309 0/0:135,0:136:99:0,376,4572 0/0:115,0:115:99:0,319,3833 0/0:75,0:75:99:0,214,2535 0/0:120,0:120:99:0,298,3696 0/0:41,0:41:99:0,114,1300 0/0:34,0:34:90.24:0,90,1015 0/0:39,0:39:99:0,111,1250 0/0:44,0:44:99:0,114,1309 0/0:39,0:39:99:0,105,1200 0/0:36,0:36:99:0,99,1192 0/0:143,0:143:99:0,370,4254 0/0:49,0:49:99:0,126,1482 0/0:38,0:38:99:0,102,1182 0/0:40,0:40:99:0,105,1176 0/0:99,0:99:99:0,259,2993 0/0:143,0:143:99:0,337,4028 0/0:98,0:98:99:0,259,2983 0/0:83,0:83:99:0,211,2505 0/0:157,0:157:99:0,448,5409 0/0:81,0:81:99:0,214,2545 0/0:119,0:119:99:0,334,4039 0/0:99,0:99:99:0,253,3081 0/0:36,0:36:96.27:0,96,1121 0/0:48,0:48:99:0,129,1462 0/0:39,0:39:96.23:0,96,1112 0/0:33,0:33:93.24:0,93,1040 0/0:44,0:44:99:0,111,1324 0/0:139,0:139:99:0,361,4179 0/0:60,0:60:99:0,159,1829 0/0:27,0:27:75.21:0,75,867 0/0:44,1:45:99:0,123,1395 0/0:47,0:47:99:0,126,1437 0/0:106,0:106:99:0,277,3172 0/0:44,1:45:94.76:0,95,1330 0/0:45,0:45:99:0,120,1377 0/0:41,0:41:99:0,114,1332 0/0:36,0:36:99:0,99,1113 0/0:37,0:37:96.25:0,96,1117 15 42143118 . T C 477.91 . AC=5;AF=0.060;AN=84;BaseQRankSum=2.065;DP=531;Dels=0.00;FS=0.853;HRun=1;HaplotypeScore=0.4405;InbreedingCoeff=-0.0661;MQ=58.70;MQ0=0;MQRankSum=1.887;QD=9.96;ReadPosRankSum=-0.404 GT:AD:DP:GQ:PL 0/1:8,1:9:16.73:17,0,214 0/0:10,0:10:30.08:0,30,343 0/0:12,0:12:36.11:0,36,426 0/0:10,0:10:30.09:0,30,354 0/0:17,0:17:45.14:0,45,559 0/0:14,0:14:36.11:0,36,449 0/1:4,5:9:99:137,0,119 0/0:13,0:13:24.08:0,24,316 0/0:8,0:8:21.06:0,21,248 0/0:7,0:7:18.05:0,18,221 0/0:15,1:16:42.12:0,42,491 0/0:11,0:11:27.05:0,27,310 0/0:7,0:7:21.06:0,21,253 0/0:17,0:17:39.11:0,39,483 0/0:35,0:35:90.27:0,90,1079 0/0:9,0:9:27.08:0,27,322 0/1:5,5:10:99:144,0,109 0/0:18,0:18:48.11:0,48,552 0/0:14,1:15:33.07:0,33,391 0/0:24,0:24:51.16:0,51,651 0/0:25,0:25:60.16:0,60,748 0/0:10,0:10:27.06:0,27,302 0/0:22,1:23:54.17:0,54,684 0/0:9,0:9:24.07:0,24,295 0/1:6,4:10:99:129,0,166 0/0:12,0:12:30.09:0,30,363 0/0:4,0:4:12.03:0,12,138 0/0:10,0:10:30.06:0,30,337 0/0:9,0:9:21.06:0,21,243 0/0:11,0:11:27.08:0,27,332 0/1:5,5:10:99:147,0,141 0/0:24,0:24:63.16:0,63,749 0/0:11,0:11:30.08:0,30,348 0/0:8,0:8:21.06:0,21,252 0/0:7,1:8:18.05:0,18,218 0/0:8,0:8:21.06:0,21,254 0/0:19,0:19:42.12:0,42,512 0/0:6,0:6:12.04:0,12,152 0/0:11,0:11:33.10:0,33,388 0/0:14,0:14:36.11:0,36,443 0/0:7,0:7:18.05:0,18,220 0/0:11,0:11:30.07:0,30,349 15 42143533 . T G 6160.45 . AC=66;AF=0.917;AN=72;BaseQRankSum=-0.167;DP=194;Dels=0.00;FS=13.257;HRun=1;HaplotypeScore=0.1160;InbreedingCoeff=-0.1253;MQ=58.55;MQ0=0;MQRankSum=0.237;QD=31.75;ReadPosRankSum=-0.196 GT:AD:DP:GQ:PL 0/1:1,4:5:23.53:128,0,24 0/1:2,2:4:53.22:53,0,61 1/1:0,5:5:15.05:188,15,0 ./. 1/1:0,4:4:12.04:158,12,0 0/1:1,1:2:30.11:35,0,30 ./. ./. 1/1:0,4:4:12.04:147,12,0 ./. 1/1:0,5:5:15.05:191,15,0 1/1:0,6:6:15.04:183,15,0 1/1:0,3:3:9.02:93,9,0 1/1:0,3:3:9.03:110,9,0 1/1:0,15:15:42.13:512,42,0 1/1:0,7:7:21.07:258,21,0 1/1:0,2:2:3.01:33,3,0 0/1:4,2:6:55.90:56,0,131 1/1:0,7:7:18.04:213,18,0 1/1:0,7:7:18.06:221,18,0 1/1:0,6:6:12.04:161,12,0 1/1:0,4:4:12.04:148,12,0 ./. 1/1:0,2:2:6.02:82,6,0 ./. 0/1:1,4:5:25.76:96,0,26 1/1:0,6:6:18.05:221,18,0 1/1:0,4:4:12.04:147,12,0 1/1:0,6:6:18.05:213,18,0 1/1:0,7:7:21.07:270,21,0 1/1:0,5:5:15.05:189,15,0 1/1:0,16:16:42.13:522,42,0 1/1:0,5:5:15.05:186,15,0 1/1:0,3:3:9.03:109,9,0 0/1:1,2:3:27.10:61,0,27 1/1:0,4:4:12.04:151,12,0 1/1:0,13:13:33.10:404,33,0 1/1:0,2:2:6.02:70,6,0 1/1:0,6:6:18.05:213,18,0 1/1:0,3:3:6.02:76,6,0 1/1:0,4:4:9.03:118,9,0 1/1:0,5:5:12.03:145,12,0 15 42147893 . G A 378.89 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.184;DP=382;Dels=0.00;FS=7.758;HRun=0;HaplotypeScore=0.4160;InbreedingCoeff=-0.0659;MQ=57.53;MQ0=0;MQRankSum=0.720;QD=12.63;ReadPosRankSum=0.802 GT:AD:DP:GQ:PL 0/0:9,0:9:21.06:0,21,239 0/0:5,0:5:15.04:0,15,178 0/0:10,0:10:27.08:0,27,319 0/0:15,0:15:45.10:0,45,521 0/0:12,0:12:33.09:0,33,383 0/0:9,0:9:27.06:0,27,298 0/1:8,6:14:99:175,0,142 0/0:7,0:7:21.06:0,21,261 0/0:10,0:10:30.08:0,30,333 0/0:9,0:9:27.08:0,27,325 0/0:10,0:10:24.06:0,24,278 0/0:5,0:5:15.04:0,15,177 0/0:2,0:2:5.99:0,6,52 0/0:11,0:11:33.09:0,33,383 0/0:21,0:21:45.13:0,45,534 0/0:8,0:8:18.05:0,18,220 0/1:2,7:9:45.41:190,0,45 0/0:5,2:7:0.69:8,0,153 0/0:12,0:14:36.08:0,36,413 0/0:17,0:17:45.14:0,45,554 0/0:6,0:6:15.05:0,15,184 0/0:14,0:14:33.08:0,33,363 0/0:20,0:22:57.15:0,57,692 0/0:8,0:8:21.05:0,21,255 0/1:4,3:7:87.64:88,0,97 0/0:12,0:12:30.08:0,30,356 0/0:4,0:4:12.03:0,12,131 0/0:3,0:3:3.01:0,3,37 0/0:5,0:5:15.04:0,15,178 0/0:8,0:8:24.07:0,24,286 0/0:2,0:2:6.02:0,6,65 0/0:15,0:15:36.10:0,36,415 0/0:4,0:4:9.03:0,9,115 0/0:5,0:5:15.01:0,15,152 0/0:8,0:8:21.06:0,21,244 0/0:6,0:6:18.05:0,18,213 0/0:11,0:11:27.08:0,27,324 0/0:4,0:4:12.02:0,12,133 0/0:12,0:12:33.09:0,33,384 0/0:5,0:5:9.03:0,9,115 0/0:7,0:7:15.04:0,15,180 0/0:10,0:10:27.06:0,27,290 15 42149472 . T C 6146.86 . AC=48;AF=0.571;AN=84;BaseQRankSum=-4.956;DP=393;Dels=0.00;FS=2.258;HRun=0;HaplotypeScore=0.1114;InbreedingCoeff=-0.1346;MQ=58.92;MQ0=0;MQRankSum=-0.630;QD=19.39;ReadPosRankSum=0.465 GT:AD:DP:GQ:PL 0/1:7,3:10:59.61:60,0,195 1/1:0,11:11:27.07:311,27,0 0/1:3,3:6:88.31:88,0,92 0/1:6,6:12:99:189,0,142 0/1:2,6:8:48.97:207,0,49 0/0:12,0:12:30.09:0,30,383 0/1:3,4:7:55.78:123,0,56 0/0:6,1:7:15.05:0,15,196 0/1:9,3:12:79.62:80,0,295 0/1:3,5:8:82.48:144,0,82 0/1:4,2:6:53.49:53,0,90 0/1:1,0:1:1.76:0,3,37 0/1:4,1:5:13.62:14,0,117 0/0:9,0:9:21.07:0,21,271 0/0:28,0:28:72.22:0,72,868 0/1:4,3:7:89.33:89,0,124 0/1:3,2:5:49.01:49,0,91 0/1:2,3:5:58.06:89,0,58 0/1:4,9:13:99:239,0,111 1/1:0,12:12:36.09:395,36,0 1/1:0,14:14:39.10:431,39,0 0/1:8,8:16:99:225,0,246 1/1:0,16:16:42.13:522,42,0 0/1:2,2:4:48.17:48,0,58 0/1:3,2:5:55.44:55,0,95 1/1:0,6:6:18.06:227,18,0 1/1:0,8:8:21.06:251,21,0 1/1:0,10:10:27.08:319,27,0 1/1:0,7:7:21.06:238,21,0 0/1:7,2:9:36.10:36,0,196 1/1:0,9:9:27.07:294,27,0 0/1:7,5:12:99:140,0,196 0/1:5,9:14:99:265,0,141 0/0:11,0:11:33.10:0,33,408 1/1:0,5:5:12.04:155,12,0 0/0:9,0:9:27.08:0,27,333 0/1:9,5:14:99:139,0,253 0/1:6,2:8:26.70:27,0,166 1/1:0,9:9:24.06:267,24,0 0/1:3,3:6:83.58:84,0,89 1/1:0,5:5:15.04:163,15,0 0/1:6,6:12:99:132,0,161 15 42149488 . C T 280.71 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.462;DP=350;Dels=0.00;FS=4.466;HRun=2;HaplotypeScore=0.1674;InbreedingCoeff=-0.0395;MQ=58.68;MQ0=0;MQRankSum=-0.162;QD=10.03;ReadPosRankSum=1.415 GT:AD:DP:GQ:PL 0/0:6,0:6:18.06:0,18,235 0/0:12,0:12:30.09:0,30,384 0/0:7,0:7:21.07:0,21,273 0/0:12,0:12:33.10:0,33,428 0/0:7,0:7:18.05:0,18,230 0/0:12,0:12:30.10:0,30,405 0/0:5,0:5:15.05:0,15,207 0/0:5,0:5:12.04:0,12,158 0/0:8,0:8:21.07:0,21,264 0/0:5,0:5:15.05:0,15,184 0/0:9,0:9:24.05:0,24,273 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.02:0,9,101 0/0:8,0:8:18.06:0,18,235 0/1:11,10:21:99:249,0,318 0/1:4,3:7:93.88:94,0,131 0/0:5,0:5:15.04:0,15,176 0/0:4,0:4:12.03:0,12,145 0/0:15,0:15:36.11:0,36,471 0/0:10,0:10:30.09:0,30,369 0/0:13,0:13:36.11:0,36,453 0/0:15,0:15:42.13:0,42,526 0/0:14,0:14:42.14:0,42,567 0/0:2,0:2:6.02:0,6,80 0/0:5,0:5:12.04:0,12,168 0/0:5,0:5:15.05:0,15,199 0/0:8,0:8:18.04:0,18,213 0/0:8,0:8:24.06:0,24,286 0/0:5,0:5:15.05:0,15,195 0/0:6,0:6:18.05:0,18,218 0/0:10,0:10:30.08:0,30,360 0/0:9,0:9:24.08:0,24,309 0/0:11,0:11:33.10:0,33,410 0/0:12,0:12:36.11:0,36,458 0/0:6,0:6:15.05:0,15,182 0/0:10,0:10:30.09:0,30,382 0/0:11,0:11:33.11:0,33,419 0/0:6,0:6:18.05:0,18,211 0/0:8,0:8:24.08:0,24,308 0/0:10,0:10:27.08:0,27,329 0/0:6,0:6:12.04:0,12,156 0/0:8,0:8:24.07:0,24,288 15 42149506 . G C 3859.06 . AC=37;AF=0.440;AN=84;BaseQRankSum=-8.975;DP=308;Dels=0.00;FS=8.025;HRun=0;HaplotypeScore=0.2002;InbreedingCoeff=0.1058;MQ=58.06;MQ0=0;MQRankSum=0.824;QD=18.38;ReadPosRankSum=-1.682 GT:AD:DP:GQ:PL 0/1:4,1:5:22.75:23,0,139 0/1:5,5:10:99:123,0,158 0/0:7,0:7:18.06:0,18,231 0/1:5,3:8:61.47:61,0,176 0/0:6,0:6:15.05:0,15,194 0/0:8,0:8:24.08:0,24,328 0/1:1,5:6:17.21:143,0,17 0/0:2,0:2:6.02:0,6,83 0/0:8,0:8:24.07:0,24,297 0/0:7,0:7:21.06:0,21,247 0/1:3,5:8:81.58:108,0,82 0/0:2,0:2:6.02:0,6,75 0/0:5,0:5:15.05:0,15,191 0/0:7,0:7:15.05:0,15,192 0/0:16,0:16:48.15:0,48,597 0/1:3,6:9:89.17:166,0,89 0/0:3,0:3:6.01:0,6,66 1/1:0,1:1:3.01:32,3,0 0/1:7,8:15:99:218,0,190 1/1:0,11:11:33.09:376,33,0 1/1:0,11:11:24.05:245,24,0 0/1:5,5:10:99:123,0,156 1/1:0,9:9:24.07:294,24,0 0/0:3,0:3:9.03:0,9,124 0/1:5,2:7:58.06:58,0,114 1/1:0,2:2:6.01:56,6,0 1/1:0,8:8:21.05:232,21,0 1/1:0,7:7:21.06:237,21,0 1/1:0,3:3:9.03:103,9,0 0/1:5,4:9:99:105,0,162 1/1:0,8:8:24.04:248,24,0 0/1:5,3:8:83.13:83,0,176 0/1:2,4:6:62.85:90,0,63 0/0:12,0:12:36.11:0,36,452 0/1:1,4:6:25.76:95,0,26 0/0:6,0:6:15.05:0,15,197 0/1:5,4:9:99:122,0,160 0/0:6,0:6:18.04:0,18,207 1/1:0,8:8:21.06:242,21,0 0/1:7,5:12:99:138,0,208 0/1:5,2:7:52.04:52,0,167 0/1:3,4:7:82.67:83,0,98 15 42149596 . C G 2430 . AC=24;AF=0.286;AN=84;BaseQRankSum=-8.985;DP=406;Dels=0.00;FS=2.867;HRun=0;HaplotypeScore=0.2579;InbreedingCoeff=-0.2999;MQ=58.34;MQ0=0;MQRankSum=0.629;QD=11.41;ReadPosRankSum=-0.136 GT:AD:DP:GQ:PL 0/0:13,0:13:33.11:0,33,432 0/0:5,0:5:15.04:0,15,177 0/1:3,2:5:32.69:33,0,95 0/1:10,7:17:99:161,0,346 0/1:5,7:12:99:204,0,158 0/1:6,3:9:68.85:69,0,221 0/1:1,2:3:27.97:46,0,28 0/0:9,0:9:27.09:0,27,346 0/1:5,5:10:99:144,0,132 0/0:5,0:5:15.04:0,15,174 0/1:3,5:8:88.09:150,0,88 0/0:8,0:8:24.07:0,24,295 0/0:4,0:4:12.03:0,12,143 0/1:4,4:8:92.28:92,0,123 1/1:0,10:10:30.07:332,30,0 0/1:3,3:6:78.11:78,0,93 0/1:4,1:5:16.61:17,0,104 0/1:5,5:10:98.03:98,0,165 0/1:9,8:17:99:191,0,224 0/0:14,0:14:39.11:0,39,481 0/0:19,0:20:51.15:0,51,648 0/1:3,4:7:94.67:113,0,95 0/0:13,0:13:33.10:0,33,421 0/1:2,2:4:63.22:63,0,70 0/1:3,5:8:99:156,0,100 0/0:2,0:2:6.02:0,6,81 0/0:8,0:8:21.07:0,21,276 0/0:18,0:18:51.16:0,51,645 0/0:6,0:6:18.06:0,18,233 0/0:11,0:11:27.09:0,27,354 0/0:13,1:14:15.45:0,15,456 0/1:9,7:16:99:168,0,251 0/0:9,0:9:27.08:0,27,332 0/1:9,5:14:99:104,0,221 0/0:9,1:10:4.39:0,4,280 0/1:5,6:11:99:154,0,158 0/1:5,2:7:37.08:37,0,121 0/1:4,2:6:49.70:50,0,127 0/0:14,0:14:39.12:0,39,497 0/1:8,3:11:70.46:70,0,271 0/0:10,0:10:24.07:0,24,282 0/1:5,4:9:83.24:83,0,155 15 42153994 . C G 19.42 . AC=7;AF=0.090;AN=78;BaseQRankSum=-3.212;DP=197;Dels=0.00;FS=44.816;HRun=1;HaplotypeScore=0.1857;InbreedingCoeff=-0.1911;MQ=57.91;MQ0=0;MQRankSum=0.212;QD=0.34;ReadPosRankSum=-1.625 GT:AD:DP:GQ:PL 0/0:2,3:5:3.01:0,3,37 0/0:6,1:7:15.03:0,15,176 0/0:1,1:2:3.01:0,3,39 0/1:3,3:6:24.41:24,0,56 0/0:6,2:8:9.03:0,9,118 0/0:4,3:7:9.03:0,9,107 ./. 0/1:4,6:10:13.66:14,0,98 0/0:2,1:3:6.02:0,6,75 0/1:3,1:4:20.46:20,0,102 0/0:1,1:2:3.01:0,3,39 0/1:5,3:8:21.93:22,0,87 0/0:4,1:5:6:0,6,56 0/0:1,1:2:3.01:0,3,37 0/1:7,4:11:8.45:8,0,213 0/0:2,1:3:6.02:0,6,72 0/0:4,0:4:12.04:0,12,149 0/0:2,0:2:6.02:0,6,74 0/0:1,0:1:3.01:0,3,37 0/0:9,0:9:18.05:0,18,216 0/0:4,3:7:9.02:0,9,105 0/1:6,2:8:15.55:16,0,136 ./. 0/0:2,0:2:6.02:0,6,68 0/0:3,0:3:3.01:0,3,38 0/0:5,1:6:9.03:0,9,112 0/0:4,0:4:12.02:0,12,134 0/1:7,3:10:14.19:14,0,191 ./. 0/0:3,0:3:9.02:0,9,104 0/0:3,1:4:9.03:0,9,111 0/0:9,1:10:18.05:0,18,215 0/0:2,0:2:6.02:0,6,76 0/0:3,1:4:9.01:0,9,87 0/0:3,1:4:9.03:0,9,111 0/0:1,2:3:3:0,3,27 0/0:3,1:4:6.02:0,6,67 0/0:1,0:1:2.99:0,3,24 0/0:2,1:3:3.01:0,3,39 0/0:3,1:4:9.02:0,9,100 0/0:4,0:4:9.02:0,9,107 0/0:5,1:6:9.03:0,9,111 15 42154118 . C T 168.80 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.206;DP=454;Dels=0.00;FS=3.087;HRun=1;HaplotypeScore=0.3377;InbreedingCoeff=-0.0178;MQ=58.91;MQ0=0;MQRankSum=0.337;QD=8.44;ReadPosRankSum=1.689 GT:AD:DP:GQ:PL 0/0:7,0:7:15.04:0,15,183 0/0:9,0:9:27.07:0,27,304 0/0:6,0:6:15.04:0,15,173 0/0:24,0:24:69.20:0,69,837 0/0:17,0:17:48.13:0,48,564 0/0:10,0:10:27.07:0,27,325 0/0:8,0:8:24.08:0,24,296 0/0:13,0:13:39.12:0,39,473 0/0:10,0:10:30.08:0,30,348 0/0:4,0:4:12.03:0,12,130 0/0:7,0:7:21.06:0,21,241 0/0:8,0:8:21.06:0,21,256 0/0:5,0:5:15.04:0,15,164 0/0:6,0:6:18.05:0,18,209 0/0:40,0:40:99:0,111,1268 0/0:8,1:9:21.05:0,21,228 0/0:10,0:10:27.08:0,27,314 0/0:6,0:6:15.05:0,15,182 0/1:11,8:20:99:215,0,296 0/0:26,0:26:66.19:0,66,810 0/0:18,0:18:51.14:0,51,586 0/0:13,0:13:39.07:0,39,410 0/0:14,0:14:39.12:0,39,473 0/0:7,0:7:21.05:0,21,233 0/0:11,0:11:33.10:0,33,391 0/0:8,0:8:24.07:0,24,287 0/0:5,0:5:12.01:0,12,132 0/0:9,0:9:27.07:0,27,293 0/0:7,0:7:21.05:0,21,238 0/0:6,0:6:18.04:0,18,199 0/0:9,0:9:27.08:0,27,336 0/0:12,0:12:36.10:0,36,436 0/0:12,0:12:36.09:0,36,418 0/0:7,0:7:15.04:0,15,169 0/0:9,0:9:24.07:0,24,281 0/0:14,0:14:39.11:0,39,451 0/0:7,0:7:21.01:0,21,207 0/0:9,0:9:27.08:0,27,313 0/0:11,0:11:30.09:0,30,362 0/0:4,0:4:12.03:0,12,139 0/0:6,0:6:15.05:0,15,179 0/0:11,0:11:27.07:0,27,314 15 42166242 . T C 7.33 . AC=3;AF=0.037;AN=82;BaseQRankSum=-6.500;DP=449;Dels=0.00;FS=26.691;HRun=2;HaplotypeScore=1.0031;InbreedingCoeff=-0.0838;MQ=56.33;MQ0=0;MQRankSum=-2.151;QD=0.31;ReadPosRankSum=-2.784 GT:AD:DP:GQ:PL 0/0:4,3:7:12.03:0,12,142 ./. 0/0:8,1:9:21.06:0,21,255 0/0:14,4:18:39.10:0,39,455 0/0:9,5:14:18.04:0,18,205 0/0:10,1:11:24.06:0,24,272 0/1:7,1:8:19.31:19,0,136 0/0:9,1:10:12.01:0,12,122 0/0:3,0:4:9.03:0,9,105 0/0:7,2:9:18.05:0,18,215 0/0:6,4:10:18.04:0,18,199 0/0:6,3:10:0.85:7,0,127 0/0:6,1:7:15.04:0,15,174 0/0:11,3:14:21.06:0,21,260 0/0:12,5:17:27.08:0,27,327 0/1:3,8:11:42.25:42,0,97 0/0:8,3:11:15.05:0,15,186 0/0:10,0:10:21.05:0,21,237 0/0:21,4:25:1.57:4,0,473 0/0:15,4:19:39.08:0,39,436 0/0:11,3:14:4.45:0,4,334 0/0:11,1:12:27.05:0,27,296 0/0:15,8:23:21.06:0,21,246 0/0:7,1:8:18.04:0,18,194 0/0:6,2:8:12.03:0,12,132 0/0:3,1:4:2.98:0,3,22 0/0:8,3:11:21.05:0,21,239 0/0:6,0:6:15.05:0,15,189 0/0:4,3:7:9.02:0,9,104 0/0:7,1:8:18.04:0,18,203 0/0:2,2:4:6.01:0,6,62 0/0:20,3:23:39.11:0,39,456 0/0:9,2:11:21.04:0,21,238 0/0:3,2:5:6.02:0,6,76 0/0:2,3:5:6.02:0,6,70 0/0:9,3:12:21.07:0,21,258 0/0:11,5:16:21.06:0,21,259 0/1:3,2:5:13.67:14,0,67 0/0:9,3:12:21.06:0,21,253 0/0:5,1:6:9.02:0,9,101 0/0:9,2:12:21.04:0,21,239 0/0:11,1:12:21.06:0,21,245 15 42169129 . G A 1297.28 . AC=6;AF=0.071;AN=84;BaseQRankSum=-4.303;DP=591;Dels=0.00;FS=11.785;HRun=0;HaplotypeScore=0.5031;InbreedingCoeff=-0.0802;MQ=59.21;MQ0=0;MQRankSum=0.602;QD=12.97;ReadPosRankSum=-0.485 GT:AD:DP:GQ:PL 0/0:11,0:11:33.11:0,33,417 0/0:11,0:11:33.10:0,33,399 0/0:10,0:10:24.07:0,24,297 0/0:17,0:17:51.17:0,51,676 0/0:28,0:28:81.26:0,81,1051 0/0:16,0:16:42.12:0,42,536 0/0:10,0:10:30.09:0,30,385 0/0:9,0:9:21.06:0,21,277 0/0:8,0:9:24.07:0,24,292 0/0:9,0:9:27.09:0,27,343 0/0:11,0:11:27.08:0,27,331 0/0:12,0:13:36.11:0,36,445 0/0:12,0:12:36.11:0,36,447 0/0:9,0:9:21.07:0,21,262 0/0:32,0:32:84.26:0,84,1055 0/0:16,0:16:48.15:0,48,589 0/0:9,0:9:24.07:0,24,298 0/0:10,0:10:27.08:0,27,340 0/0:23,0:23:63.19:0,63,760 0/0:22,0:22:51.12:0,51,615 0/1:13,10:25:99:236,0,377 0/1:4,8:12:99:253,0,111 0/0:28,0:28:81.27:0,81,1086 0/0:9,0:9:24.07:0,24,301 0/0:18,0:18:48.15:0,48,609 0/0:11,0:11:33.10:0,33,420 0/0:5,0:5:12.04:0,12,151 0/1:3,10:13:75.83:327,0,76 0/0:11,0:11:30.10:0,30,377 0/0:7,0:8:18.05:0,18,213 0/0:11,0:11:30.09:0,30,375 0/0:26,0:26:69.22:0,69,891 0/1:11,8:19:99:191,0,337 0/0:10,0:10:30.09:0,30,365 0/0:11,0:11:30.10:0,30,382 0/0:15,0:15:33.10:0,33,424 0/1:8,9:17:99:252,0,253 0/0:3,0:3:9.03:0,9,111 0/1:9,5:14:99:145,0,289 0/0:13,0:13:36.11:0,36,451 0/0:9,0:9:24.07:0,24,295 0/0:16,0:16:45.14:0,45,561 15 42287578 . G A 37998.23 . AC=69;AF=0.821;AN=84;BaseQRankSum=2.953;DP=1464;Dels=0.00;FS=11.184;HRun=0;HaplotypeScore=0.9518;InbreedingCoeff=-0.0551;MQ=58.83;MQ0=0;MQRankSum=1.351;QD=26.67;ReadPosRankSum=0.654 GT:AD:DP:GQ:PL 1/1:0,33:33:87.27:1084,87,0 1/1:0,34:34:84.26:1062,84,0 1/1:0,25:25:72.22:881,72,0 0/1:25,24:49:99:704,0,758 0/1:21,20:42:99:558,0,627 0/1:22,14:36:99:437,0,631 1/1:0,32:32:90.27:1092,90,0 0/1:26,21:47:99:598,0,758 1/1:0,30:30:81.24:994,81,0 1/1:0,21:21:57.18:717,57,0 1/1:0,27:27:78.23:958,78,0 1/1:0,30:30:84.25:1039,84,0 1/1:0,23:24:69.21:847,69,0 0/1:15,19:34:99:442,0,442 1/1:0,107:107:99:3571,292,0 1/1:0,27:27:81.24:964,81,0 1/1:0,29:29:78.25:989,78,0 1/1:0,19:19:54.17:665,54,0 1/1:2,45:47:99:1525,120,0 1/1:0,43:43:99:1441,117,0 0/1:28,16:44:99:481,0,767 0/1:18,17:35:99:463,0,474 1/1:0,62:62:99:2080,166,0 0/1:17,18:35:99:569,0,468 0/1:21,16:37:99:446,0,615 1/1:0,28:28:78.25:996,78,0 1/1:0,22:22:66.20:810,66,0 1/1:0,24:24:72.21:866,72,0 1/1:0,22:22:57.17:695,57,0 1/1:0,25:25:69.20:841,69,0 1/1:0,22:22:57.16:704,57,0 1/1:0,64:64:99:2137,175,0 1/1:0,43:43:99:1429,114,0 1/1:0,26:26:72.22:887,72,0 0/1:15,5:20:99:127,0,450 1/1:0,30:30:81.25:995,81,0 0/1:18,26:44:99:712,0,436 1/1:0,20:20:54.16:671,54,0 0/0:39,0:39:99:0,114,1291 0/1:21,10:31:99:274,0,598 1/1:0,21:21:63.19:754,63,0 0/1:15,19:34:99:492,0,388 15 42287606 . T C 4020.43 . AC=7;AF=0.083;AN=84;BaseQRankSum=9.307;DP=1506;Dels=0.00;FS=1.079;HRun=0;HaplotypeScore=1.1330;InbreedingCoeff=-0.0909;MQ=58.90;MQ0=0;MQRankSum=2.894;QD=14.84;ReadPosRankSum=1.618 GT:AD:DP:GQ:PL 0/0:32,0:32:90.22:0,90,1052 0/0:34,0:34:87.22:0,87,1044 0/0:24,0:24:54.13:0,54,646 0/1:29,30:60:99:843,0,804 0/1:20,23:43:99:772,0,541 0/0:42,0:43:99:0,114,1429 0/0:37,0:37:99:0,105,1238 0/0:43,0:43:99:0,114,1316 0/0:32,0:34:81.24:0,81,1008 0/0:23,0:23:69.16:0,69,787 0/0:18,0:18:51.09:0,51,574 0/0:22,1:23:60.18:0,60,721 0/0:22,0:23:66.20:0,66,790 0/0:33,0:33:93.28:0,93,1136 0/0:106,0:111:99:0,280,3382 0/0:25,0:25:75.22:0,75,890 0/0:31,0:32:90.22:0,90,1037 0/0:21,0:21:57.14:0,57,661 0/0:47,0:48:99:0,123,1470 0/0:52,0:52:99:0,141,1700 0/0:45,0:48:99:0,123,1453 0/0:39,0:39:99:0,108,1273 0/0:73,0:75:99:0,205,2491 0/1:16,12:28:99:366,0,437 0/1:18,22:41:99:695,0,443 0/0:29,0:29:78.20:0,78,928 0/0:29,0:29:84.21:0,84,978 0/0:21,0:21:60.16:0,60,691 0/0:24,0:24:63.18:0,63,759 0/0:28,0:28:78.20:0,78,907 0/0:20,0:22:57.16:0,57,664 0/0:58,0:59:99:0,141,1724 0/0:33,0:35:87.24:0,87,1020 0/0:21,0:21:57.17:0,57,692 0/1:6,11:17:99:326,0,162 0/0:32,0:32:78.18:0,78,928 0/1:27,15:44:99:311,0,726 0/0:28,0:28:66.19:0,66,813 0/1:13,25:38:99:709,0,317 0/0:30,0:30:84.23:0,84,1002 0/0:26,0:26:66.20:0,66,803 0/0:33,0:33:90.26:0,90,1079 15 42363012 . G C 671.65 . AC=9;AF=0.107;AN=84;BaseQRankSum=-1.674;DP=488;Dels=0.00;FS=1.739;HRun=1;HaplotypeScore=0.5140;InbreedingCoeff=0.0750;MQ=59.05;MQ0=0;MQRankSum=0.951;QD=11.78;ReadPosRankSum=-1.501 GT:AD:DP:GQ:PL 0/0:7,0:7:18.06:0,18,231 0/0:7,0:7:21.06:0,21,253 0/0:6,0:6:18.05:0,18,221 0/0:29,0:29:69.22:0,69,919 0/0:33,0:33:78.25:0,78,1044 0/0:21,0:21:54.15:0,54,708 0/0:11,0:11:30.09:0,30,393 0/0:16,0:16:45.15:0,45,600 0/1:4,3:7:85.93:86,0,123 0/0:6,0:6:15.04:0,15,181 0/1:4,1:5:26.54:27,0,103 0/0:8,0:8:24.07:0,24,297 0/0:10,0:10:27.07:0,27,322 0/0:7,0:7:18.06:0,18,225 0/0:36,0:36:93.29:0,93,1179 0/1:5,2:7:55.31:55,0,165 0/0:12,0:12:30.10:0,30,382 0/1:2,8:10:20.69:253,0,21 0/0:15,0:15:39.12:0,39,483 0/0:13,0:13:39.12:0,39,491 0/1:9,7:16:99:171,0,222 1/1:0,6:6:12.04:150,12,0 0/0:32,0:32:90.24:0,90,1144 0/0:21,0:21:60.19:0,60,794 0/0:12,1:13:0.95:6,0,405 0/0:12,0:12:33.07:0,33,410 0/1:1,1:2:30.96:31,0,33 0/1:2,1:3:26.23:26,0,55 0/0:5,0:5:9.02:0,9,100 0/0:10,0:10:24.06:0,24,294 0/0:12,0:12:33.09:0,33,394 0/0:14,0:14:39.10:0,39,480 0/0:6,0:7:18.06:0,18,228 0/0:3,0:3:9.03:0,9,113 0/0:8,0:8:21.06:0,21,265 0/0:5,0:5:15.04:0,15,179 0/0:9,0:9:18.05:0,18,213 0/0:10,0:10:30.09:0,30,367 0/0:6,0:6:18.05:0,18,217 0/0:11,0:11:30.09:0,30,375 0/0:9,0:9:27.09:0,27,339 0/0:7,0:7:21.07:0,21,263 15 42363043 . T G 914.08 . AC=10;AF=0.119;AN=84;BaseQRankSum=4.412;DP=654;Dels=0.00;FS=5.174;HRun=5;HaplotypeScore=0.7852;InbreedingCoeff=0.0960;MQ=58.69;MQ0=0;MQRankSum=-0.264;QD=10.51;ReadPosRankSum=-0.027 GT:AD:DP:GQ:PL 0/0:8,0:8:21.06:0,21,256 0/0:12,0:12:33.09:0,33,380 0/0:5,0:5:12.04:0,12,156 0/0:38,0:38:99:0,102,1246 0/0:40,0:40:99:0,102,1281 0/0:29,0:29:75.18:0,75,920 0/0:17,0:17:39.13:0,39,522 0/0:15,0:15:45.14:0,45,561 0/1:2,1:3:29.55:30,0,65 0/0:10,0:10:30.09:0,30,349 0/1:6,3:9:85.74:86,0,153 0/0:9,0:9:27.08:0,27,323 0/0:13,0:13:33.09:0,33,390 0/0:10,0:10:27.08:0,27,318 0/0:53,0:53:99:0,132,1619 0/1:5,3:8:61.51:62,0,147 0/0:14,0:14:42.13:0,42,516 0/1:1,8:9:12.91:238,0,13 0/0:18,0:18:54.14:0,54,617 0/0:17,0:17:45.14:0,45,564 0/1:16,5:21:99:126,0,455 1/1:0,8:8:24.06:281,24,0 0/0:42,0:42:99:0,102,1270 0/0:34,0:34:75.21:0,75,966 0/1:13,6:19:99:150,0,380 0/0:17,0:17:45.12:0,45,543 0/1:5,2:7:59.05:59,0,139 0/1:2,1:3:22.52:23,0,66 0/0:9,0:9:24.07:0,24,291 0/0:16,0:16:39.12:0,39,491 0/0:16,0:16:36.11:0,36,457 0/0:21,0:21:57.18:0,57,706 0/0:14,0:14:36.11:0,36,442 0/0:5,0:5:15.05:0,15,181 0/0:8,0:8:21.06:0,21,256 0/0:9,0:9:24.08:0,24,305 0/0:18,0:18:51.15:0,51,611 0/0:11,0:11:33.10:0,33,392 0/0:10,0:10:27.08:0,27,330 0/0:9,0:9:27.08:0,27,319 0/0:12,0:12:27.09:0,27,351 0/0:8,0:8:21.06:0,21,245 15 42363078 . T C 1071.56 . AC=10;AF=0.119;AN=84;BaseQRankSum=7.186;DP=569;Dels=0.00;FS=3.049;HRun=0;HaplotypeScore=0.4622;InbreedingCoeff=0.0802;MQ=58.71;MQ0=0;MQRankSum=0.706;QD=12.04;ReadPosRankSum=-0.804 GT:AD:DP:GQ:PL 0/0:9,0:9:24.07:0,24,285 0/0:15,0:15:42.12:0,42,491 0/0:6,0:6:18.02:0,18,194 0/0:31,1:32:45.98:0,46,922 0/0:33,0:33:93.27:0,93,1092 0/0:22,0:22:60.18:0,60,730 0/0:14,0:14:36.11:0,36,435 0/0:11,0:11:33.08:0,33,376 0/1:2,3:5:54.57:80,0,55 0/0:12,0:12:33.09:0,33,368 0/1:3,4:7:86.76:96,0,87 0/0:7,0:7:21.06:0,21,246 0/0:12,0:12:36.10:0,36,409 0/0:6,0:6:18.05:0,18,209 0/0:42,0:42:99:0,120,1380 0/1:7,5:12:99:123,0,201 0/0:7,0:7:21.06:0,21,244 0/1:3,8:11:35.01:230,0,35 0/0:11,0:11:33.09:0,33,378 0/0:14,0:15:39.12:0,39,472 0/1:11,5:16:99:128,0,339 1/1:0,6:6:18.06:229,18,0 0/0:34,0:34:93.28:0,93,1101 0/0:20,0:20:54.14:0,54,634 0/1:10,7:18:99:201,0,229 0/0:18,0:18:48.13:0,48,559 0/1:7,3:10:59.27:59,0,195 0/1:2,2:4:57.53:64,0,58 0/0:9,0:9:27.07:0,27,299 0/0:14,0:14:39.12:0,39,470 0/0:12,0:12:30.09:0,30,357 0/0:22,0:23:57.17:0,57,697 0/0:16,0:16:39.12:0,39,472 0/0:6,0:6:15.05:0,15,184 0/0:6,0:6:18.06:0,18,217 0/0:9,0:9:27.08:0,27,312 0/0:22,0:22:60.16:0,60,695 0/0:11,0:11:30.09:0,30,343 0/0:8,0:9:21.06:0,21,254 0/0:8,0:8:24.04:0,24,254 0/0:3,0:4:9.02:0,9,102 0/0:5,0:5:15.04:0,15,174 15 42363350 . C A 178.57 . AC=8;AF=0.095;AN=84;BaseQRankSum=-11.011;DP=1280;Dels=0.00;FS=526.516;HRun=1;HaplotypeScore=0.9795;InbreedingCoeff=-0.1374;MQ=58.33;MQ0=1;MQRankSum=1.018;QD=1.08;ReadPosRankSum=-12.075 GT:AD:DP:GQ:PL 0/0:23,3:26:54.09:0,54,641 0/1:20,5:25:10.72:11,0,536 0/0:17,3:20:42.11:0,42,515 0/0:59,7:66:99:0,142,1834 0/0:54,19:73:70.19:0,70,1643 0/0:31,7:38:45.12:0,45,990 0/0:28,9:37:43.47:0,43,789 0/0:28,10:38:30.89:0,31,769 0/1:13,4:17:47.73:48,0,338 0/0:13,2:15:33.10:0,33,416 0/1:11,3:14:22.94:23,0,298 0/0:9,5:14:1.15:5,0,301 0/0:14,1:15:39.11:0,39,471 0/0:9,4:14:3.38:0,3,287 0/0:63,13:76:91.61:0,92,1737 0/0:13,3:16:30.07:0,30,360 0/0:23,1:24:28.81:0,29,695 0/0:9,5:14:0.47:0,0,311 0/0:35,9:44:1.79:0,2,1004 0/0:43,8:51:99:0,101,1250 0/0:35,6:41:28.88:0,29,1076 0/0:26,4:30:63.13:0,63,731 0/0:63,13:76:99:0,161,2454 0/0:22,7:29:60.13:0,60,786 0/0:36,7:43:96.03:0,96,1258 0/0:19,3:22:54.18:0,54,730 0/0:12,4:16:30.10:0,30,383 0/1:16,5:21:34.63:35,0,316 0/0:17,2:20:42.13:0,42,527 0/0:18,2:20:51.15:0,51,616 0/1:17,7:24:18.84:19,0,474 0/0:39,9:48:42.94:0,43,883 0/0:22,8:30:63.20:0,63,805 0/0:22,4:26:23.03:0,23,560 0/0:18,3:21:35.70:0,36,370 0/0:25,3:28:34.63:0,35,730 0/0:34,14:48:1.47:0,1,972 0/0:17,2:19:42.13:0,42,526 0/1:9,7:16:91.82:92,0,258 0/1:15,9:24:55.84:56,0,477 0/0:14,2:16:30.09:0,30,381 0/1:18,7:25:7.95:8,0,557 15 42363395 . C T 2386.29 . AC=10;AF=0.119;AN=84;BaseQRankSum=0.340;DP=884;Dels=0.00;FS=3.128;HRun=0;HaplotypeScore=1.0799;InbreedingCoeff=0.0913;MQ=58.27;MQ0=0;MQRankSum=1.784;QD=14.64;ReadPosRankSum=-0.170 GT:AD:DP:GQ:PL 0/0:20,0:20:51.13:0,51,575 0/0:16,0:16:42.09:0,42,467 0/0:10,0:10:27.06:0,27,282 0/0:41,0:41:99:0,108,1186 0/0:50,0:51:99:0,141,1638 0/0:37,0:37:90.23:0,90,1037 0/0:25,0:26:60.14:0,60,677 0/0:31,0:31:81.13:0,81,883 0/1:4,9:13:83.08:267,0,83 0/0:15,0:15:42.11:0,42,475 0/1:4,2:6:52.43:52,0,114 0/0:11,0:11:30.06:0,30,320 0/0:9,0:9:21.05:0,21,230 0/0:14,0:14:36.09:0,36,400 0/0:38,0:39:93.24:0,93,1033 0/1:9,6:15:99:133,0,237 0/0:17,0:17:45.12:0,45,519 0/1:7,4:11:99:104,0,128 0/0:23,0:24:69.14:0,69,754 0/0:36,0:36:99:0,102,1160 0/1:12,12:24:99:348,0,289 1/1:0,29:30:81.13:848,81,0 0/0:57,0:57:99:0,165,1907 0/0:18,0:18:51.14:0,51,612 0/1:20,16:36:99:413,0,483 0/0:15,0:15:45.13:0,45,545 0/1:9,6:16:99:156,0,226 0/1:5,7:12:99:204,0,128 0/0:12,0:12:36.05:0,36,390 0/0:14,0:14:39.09:0,39,423 0/0:15,0:15:45.09:0,45,494 0/0:32,0:32:87.18:0,87,947 0/0:20,0:20:57.10:0,57,621 0/0:8,0:8:24.07:0,24,273 0/0:14,0:14:30.05:0,30,315 0/0:15,0:15:36.07:0,36,406 0/0:31,0:31:78.18:0,78,839 0/0:11,0:11:33.07:0,33,361 0/0:16,0:16:42.10:0,42,476 0/0:18,0:18:48.14:0,48,570 0/0:13,0:13:36.10:0,36,414 0/0:15,0:15:45.07:0,45,476 15 42363480 . G A 1782.28 . AC=10;AF=0.119;AN=84;BaseQRankSum=-2.320;DP=918;Dels=0.00;FS=4.230;HRun=0;HaplotypeScore=0.8978;InbreedingCoeff=0.0907;MQ=58.28;MQ0=1;MQRankSum=-0.706;QD=12.38;ReadPosRankSum=-0.382 GT:AD:DP:GQ:PL 0/0:24,0:24:63.15:0,63,737 0/0:16,0:16:45.13:0,45,518 0/0:17,0:17:42.11:0,42,479 0/0:36,1:37:64.74:0,65,1150 0/0:45,0:45:99:0,126,1607 0/0:29,0:29:75.24:0,75,1001 0/0:28,0:28:72.23:0,72,935 0/0:19,0:19:57.16:0,57,679 0/1:5,11:16:90.29:304,0,90 0/0:17,0:17:48.13:0,48,571 0/1:2,3:5:61.33:89,0,61 0/0:17,0:17:51.12:0,51,575 0/0:7,0:7:18.02:0,18,198 0/0:11,0:11:30.06:0,30,341 0/0:51,0:51:99:0,126,1493 0/1:13,8:21:99:220,0,322 0/0:18,0:18:48.12:0,48,575 0/1:10,5:15:99:127,0,273 0/0:29,0:29:78.22:0,78,932 0/0:45,0:45:99:0,132,1558 0/1:10,11:21:99:233,0,278 1/1:0,15:15:42.12:491,42,0 0/0:46,0:46:99:0,117,1475 0/0:21,0:21:54.17:0,54,705 0/1:18,6:24:99:155,0,493 0/0:26,0:26:72.21:0,72,895 0/1:6,8:14:99:184,0,133 0/1:8,5:13:99:120,0,228 0/0:14,0:14:39.12:0,39,473 0/0:19,0:19:45.13:0,45,547 0/0:15,0:15:36.10:0,36,419 0/0:35,0:35:93.25:0,93,1089 0/0:29,0:29:78.18:0,78,914 0/0:20,0:20:51.12:0,51,612 0/0:6,0:6:18.05:0,18,218 0/0:28,0:28:69.19:0,69,826 0/0:28,0:28:63.18:0,63,775 0/0:10,0:10:30.07:0,30,323 0/0:19,0:19:51.14:0,51,593 0/0:15,0:15:45.11:0,45,513 0/0:15,0:15:39.11:0,39,464 0/0:18,0:18:51.13:0,51,581 15 42371752 . A T 5564.39 . AC=25;AF=0.298;AN=84;BaseQRankSum=-5.755;DP=646;Dels=0.00;FS=3.668;HRun=0;HaplotypeScore=0.4545;InbreedingCoeff=0.1428;MQ=59.11;MQ0=0;MQRankSum=0.199;QD=18.30;ReadPosRankSum=-0.346 GT:AD:DP:GQ:PL 0/0:15,0:15:42.12:0,42,502 0/0:9,0:9:24.07:0,24,297 0/0:9,0:9:24.07:0,24,287 0/0:30,0:30:78.24:0,78,970 0/1:8,10:18:99:292,0,207 0/1:7,6:13:99:175,0,222 1/1:0,16:16:45.14:546,45,0 0/1:3,13:16:67.44:377,0,67 0/0:12,0:12:33.07:0,33,391 0/0:21,0:21:54.16:0,54,649 0/0:17,0:17:42.13:0,42,514 0/0:6,0:6:18.03:0,18,206 0/1:5,8:13:99:242,0,139 0/0:17,0:17:45.14:0,45,563 1/1:0,37:37:99:1153,99,0 0/1:11,7:20:99:161,0,275 0/1:6,5:11:99:131,0,176 0/0:15,0:15:39.12:0,39,477 0/0:15,0:15:39.11:0,39,468 0/0:29,0:29:81.24:0,81,977 0/0:17,0:17:45.13:0,45,553 0/0:14,0:14:42.12:0,42,491 0/0:27,0:27:75.22:0,75,895 0/1:5,3:8:76.57:77,0,152 0/1:13,4:17:67.39:67,0,411 0/0:14,0:14:36.11:0,36,440 0/0:6,0:7:15.05:0,15,181 0/0:13,0:13:27.08:0,27,350 0/0:8,0:8:18.05:0,18,222 1/1:0,10:10:27.05:295,27,0 0/1:3,6:9:77.76:174,0,78 0/0:22,0:22:48.14:0,48,593 0/1:6,6:12:99:178,0,151 1/1:0,11:11:30.05:338,30,0 0/1:5,5:10:99:120,0,152 1/1:0,13:13:33.10:403,33,0 0/1:7,5:12:99:114,0,203 0/1:12,10:22:99:236,0,269 0/0:11,0:11:30.08:0,30,356 0/1:5,9:14:99:234,0,144 0/0:14,0:14:39.11:0,39,459 0/1:12,10:22:99:254,0,333 15 42373810 . G C 27178.92 . AC=25;AF=0.298;AN=84;BaseQRankSum=-27.317;DP=3159;DS;Dels=0.00;FS=3.282;HRun=0;HaplotypeScore=2.6187;InbreedingCoeff=0.1458;MQ=58.83;MQ0=0;MQRankSum=2.216;QD=18.28;ReadPosRankSum=-3.837 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,153,1927 0/0:64,0:64:99:0,187,2319 0/0:47,0:47:99:0,123,1587 0/0:147,0:147:99:0,397,5291 0/1:77,61:140:99:1779,0,2491 0/1:45,49:94:99:1449,0,1378 1/1:1,78:79:99:2638,180,0 0/1:49,59:108:99:1773,0,1444 0/0:60,0:60:99:0,166,2113 0/0:48,0:48:99:0,138,1759 0/0:62,0:62:99:0,184,2294 0/0:47,1:48:99:0,109,1665 0/1:17,15:32:99:383,0,514 0/0:56,0:56:99:0,160,2027 1/1:0,177:177:99:5391,469,0 0/1:37,36:73:99:974,0,1127 0/1:36,34:70:99:883,0,1022 0/0:52,0:52:99:0,150,1892 0/0:101,0:101:99:0,289,3568 0/0:131,0:132:99:0,358,4564 0/0:105,0:105:99:0,277,3517 0/0:66,0:66:99:0,181,2268 0/0:170,0:170:99:0,442,5987 0/1:25,32:57:99:989,0,739 0/1:56,37:93:99:1097,0,1551 0/0:78,0:78:99:0,211,2871 0/0:41,0:41:99:0,123,1557 0/0:77,0:77:99:0,214,2690 0/0:47,0:47:99:0,138,1705 1/1:0,43:43:99:1389,120,0 0/1:24,27:51:99:747,0,740 0/0:99,0:99:99:0,271,3434 0/1:33,40:73:99:1053,0,954 1/1:0,48:48:99:1536,135,0 0/1:24,24:48:99:598,0,765 1/1:0,48:48:99:1435,123,0 0/1:54,44:98:99:1006,0,1569 0/1:26,25:51:99:671,0,776 0/0:60,0:60:99:0,172,2143 0/1:22,31:53:99:770,0,649 0/0:55,1:56:99:0,134,2001 0/1:28,23:51:99:617,0,796 15 42434254 . G A 44065.65 . AC=46;AF=0.548;AN=84;BaseQRankSum=10.252;DP=2351;Dels=0.00;FS=29.250;HRun=0;HaplotypeScore=1.7746;InbreedingCoeff=0.0389;MQ=58.73;MQ0=0;MQRankSum=0.766;QD=22.69;ReadPosRankSum=-0.106 GT:AD:DP:GQ:PL 0/1:23,20:43:99:563,0,624 0/1:20,13:33:99:367,0,431 0/0:32,0:32:96.23:0,96,1054 1/1:0,132:132:99:4485,379,0 1/1:1,106:108:99:3619,274,0 0/1:45,43:88:99:1271,0,1325 1/1:0,69:69:99:2324,193,0 0/1:26,40:66:99:1168,0,742 1/1:0,36:37:99:1232,105,0 0/1:18,13:31:99:363,0,518 1/1:0,37:37:99:1256,108,0 0/1:21,22:43:99:636,0,551 1/1:0,29:29:84.25:1001,84,0 0/0:36,0:37:99:0,102,1164 0/1:55,62:117:99:1736,0,1384 0/0:36,0:36:99:0,105,1161 1/1:0,40:40:99:1373,114,0 0/0:40,1:41:83.37:0,83,1339 0/1:39,54:93:99:1441,0,947 1/1:0,67:67:99:2173,181,0 1/1:0,65:65:99:2129,178,0 0/1:18,21:40:99:584,0,458 1/1:0,124:124:99:4231,352,0 0/1:35,31:66:99:823,0,997 0/1:46,46:92:99:1330,0,1242 0/0:71,1:72:99:0,177,2441 0/1:18,15:33:99:443,0,489 0/0:38,0:38:99:0,111,1257 0/1:21,18:39:99:522,0,585 1/1:0,41:41:99:1347,114,0 0/1:24,20:44:99:581,0,650 1/1:0,62:63:99:2096,172,0 0/1:25,24:49:99:686,0,624 0/1:23,21:44:99:555,0,595 0/0:48,0:48:99:0,135,1514 1/1:0,37:37:99:1301,108,0 0/0:66,0:67:99:0,186,2115 0/0:38,0:38:99:0,108,1239 0/1:16,20:36:99:605,0,436 0/1:19,23:42:99:710,0,476 0/1:23,20:43:99:570,0,624 0/1:31,20:51:99:546,0,807 15 42434282 . G C 31.73 . AC=1;AF=0.012;AN=84;BaseQRankSum=-11.286;DP=1979;Dels=0.00;FS=415.701;HRun=2;HaplotypeScore=1.2955;InbreedingCoeff=-0.0281;MQ=58.52;MQ0=0;MQRankSum=0.896;QD=0.93;ReadPosRankSum=-10.801 GT:AD:DP:GQ:PL 0/0:36,9:45:51.13:0,51,985 0/0:30,4:34:24.04:0,24,830 0/0:32,6:38:62.69:0,63,1087 0/0:60,22:82:99:0,155,2222 0/0:58,25:83:99:0,116,2192 0/0:60,9:71:99:0,149,2200 0/0:41,2:43:99:0,114,1496 0/0:47,2:50:99:0,123,1599 0/0:30,10:40:31.92:0,32,956 0/0:21,8:29:59.65:0,60,706 0/0:28,5:33:76.48:0,76,927 0/1:24,10:34:77.74:78,0,712 0/0:19,5:24:32.51:0,33,674 0/0:37,7:44:43.77:0,44,1237 0/0:96,18:114:99:0,183,3164 0/0:31,10:41:2.52:0,3,966 0/0:32,6:38:63.80:0,64,1126 0/0:21,2:23:63.17:0,63,762 0/0:57,15:72:99:0,102,1846 0/0:42,12:54:99:0,118,1461 0/0:48,7:55:81.05:0,81,1487 0/0:33,8:41:66.78:0,67,1146 0/0:73,20:93:99:0,211,2733 0/0:43,1:44:99:0,120,1567 0/0:59,12:71:99:0,178,2323 0/0:48,10:58:99:0,109,1675 0/0:27,8:35:16.57:0,17,902 0/0:35,10:45:13.55:0,14,1102 0/0:24,10:34:10.68:0,11,750 0/0:28,6:34:79.79:0,80,969 0/0:32,4:36:87.24:0,87,1053 0/0:42,10:53:99:0,114,1442 0/0:39,2:41:90.29:0,90,1152 0/0:34,6:40:1.82:0,2,992 0/0:30,10:40:7.37:0,7,941 0/0:36,7:43:43.09:0,43,1126 0/0:41,8:49:40.48:0,40,1306 0/0:23,7:30:4.98:0,5,727 0/0:32,4:36:33.81:0,34,1070 0/0:38,7:45:65.87:0,66,1163 0/0:28,1:29:72.22:0,72,901 0/0:34,1:35:93.26:0,93,1147 15 42434282 . G GC 42.32 . AC=4;AF=0.048;AN=84;BaseQRankSum=10.739;DP=2111;FS=610.788;HRun=2;HaplotypeScore=229.6663;InbreedingCoeff=-0.0802;MQ=58.82;MQ0=0;MQRankSum=0.003;QD=0.28;ReadPosRankSum=-15.625 GT:AD:DP:GQ:PL 0/0:45,0:45:54.49:0,54,960 0/0:35,0:35:27.82:0,28,837 0/0:40,0:40:45.66:0,46,956 0/0:86,0:86:99:0,141,1917 0/0:89,0:89:99:0,114,1954 0/0:75,0:73:99:0,137,1875 0/0:45,8:53:99:0,107,1320 0/0:49,13:62:99:0,108,1491 0/0:41,0:41:37.37:0,37,908 0/0:32,0:32:26.41:0,26,668 0/0:33,0:33:42.05:0,42,859 0/1:34,0:34:81.44:81,0,631 0/0:26,0:26:33.97:0,34,621 0/0:44,0:44:40.25:0,40,1115 0/0:117,0:117:99:0,183,3107 0/1:42,0:42:16.43:16,0,867 0/0:39,0:39:58.43:0,58,1006 0/0:20,6:26:0.36:0,0,524 0/0:71,0:71:58.99:0,59,1712 0/0:61,0:61:72.49:0,72,1401 0/0:56,0:56:99:0,104,1520 0/0:44,0:44:67.21:0,67,1123 0/0:98,0:98:99:0,208,2531 0/0:45,10:52:99:0,110,1374 0/0:75,0:75:99:0,161,1984 0/0:64,0:64:99:0,111,1585 0/0:37,0:37:27.07:0,27,881 0/0:46,0:46:23.99:0,24,1067 0/1:36,0:36:18.90:19,0,786 0/0:34,0:34:40.98:0,41,871 0/0:37,0:37:80.57:0,81,990 0/0:59,0:59:99:0,115,1398 0/0:39,16:55:0.40:10,0,968 0/0:38,0:38:5.67:0,6,902 0/1:41,0:41:12.97:13,0,761 0/0:46,0:46:55.56:0,56,1148 0/0:52,1:53:47.43:0,47,1318 0/0:30,0:30:22.09:0,22,734 0/0:37,0:37:38.29:0,38,1023 0/0:45,0:45:81.66:0,82,1292 0/0:25,7:31:1.58:4,0,777 0/0:33,9:42:46.11:0,46,1029 15 42434285 . A C 5216.08 . AC=41;AF=0.488;AN=84;BaseQRankSum=-22.418;DP=2289;Dels=0.00;FS=2207.060;HRun=2;HaplotypeScore=1.3738;InbreedingCoeff=-0.9438;MQ=58.86;MQ0=0;MQRankSum=-0.721;QD=2.32;ReadPosRankSum=-22.407 GT:AD:DP:GQ:PL 0/1:28,16:44:99:168,0,812 0/1:26,11:37:34.23:34,0,804 0/1:26,17:43:87.55:88,0,734 0/1:59,41:100:99:314,0,1808 0/1:56,37:93:99:371,0,1588 0/1:56,26:83:99:134,0,1706 0/1:41,18:59:82.77:83,0,1197 0/1:49,19:68:99:290,0,1437 0/1:28,14:42:99:164,0,811 0/1:22,11:33:99:106,0,585 0/1:24,12:36:13.28:13,0,716 0/1:22,17:39:99:161,0,615 0/1:18,14:32:88.94:89,0,538 0/1:34,9:43:41.40:41,0,1018 0/1:95,34:129:99:110,0,2642 0/1:30,14:44:99:240,0,841 0/1:33,13:46:99:142,0,996 0/1:17,8:25:74.23:74,0,536 0/1:52,28:80:99:207,0,1489 0/1:44,23:67:36.01:36,0,1344 0/1:44,14:58:28.87:29,0,1384 0/1:34,13:47:99:148,0,967 0/1:70,38:108:99:180,0,2124 0/1:41,21:62:99:133,0,1311 0/1:58,23:81:99:156,0,1883 0/1:46,23:69:61.61:62,0,1432 0/1:28,13:41:96.13:96,0,831 0/1:32,13:45:99:145,0,921 0/1:25,14:39:5.50:6,0,728 0/1:25,13:38:99:108,0,737 0/1:28,10:38:60.19:60,0,869 0/1:42,23:65:99:196,0,1258 0/1:31,27:58:99:189,0,746 0/1:31,12:43:48.23:48,0,952 0/1:23,22:45:99:213,0,688 0/1:33,15:48:99:136,0,1026 0/1:41,17:58:99:252,0,1183 0/1:24,9:33:43.48:43,0,694 0/0:32,6:38:12.55:0,13,964 0/1:36,15:51:59.81:60,0,1030 0/1:25,10:35:44.58:45,0,775 0/1:33,13:46:44.24:44,0,993 15 42434398 . C G 233.03 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.136;DP=1429;Dels=0.00;FS=1.733;HRun=0;HaplotypeScore=0.9259;InbreedingCoeff=-0.0121;MQ=59.16;MQ0=0;MQRankSum=0.176;QD=9.71;ReadPosRankSum=-1.521 GT:AD:DP:GQ:PL 0/0:31,0:31:84.27:0,84,1069 0/0:20,0:20:57.18:0,57,728 0/1:13,11:24:99:279,0,403 0/0:59,0:59:99:0,175,2318 0/0:39,0:39:99:0,108,1472 0/0:42,0:42:99:0,120,1613 0/0:33,0:33:93.31:0,93,1264 0/0:41,0:41:99:0,117,1587 0/0:33,0:33:87.27:0,87,1109 0/0:32,0:32:93.29:0,93,1168 0/0:18,0:18:51.15:0,51,622 0/0:30,0:30:90.28:0,90,1123 0/0:18,0:18:48.15:0,48,602 0/0:26,0:26:72.22:0,72,910 0/0:108,0:108:99:0,301,3839 0/0:25,0:25:75.23:0,75,937 0/0:41,0:41:99:0,120,1496 0/0:20,0:20:57.18:0,57,710 0/0:37,0:37:99:0,105,1339 0/0:31,0:31:81.26:0,81,1035 0/0:30,1:31:84.25:0,84,1047 0/0:31,0:31:90.28:0,90,1130 0/0:67,0:67:99:0,193,2585 0/0:34,0:34:87.26:0,87,1167 0/0:52,0:52:99:0,144,1944 0/0:38,0:38:99:0,102,1348 0/0:22,0:22:66.21:0,66,834 0/0:37,0:37:99:0,108,1335 0/0:19,1:20:35.47:0,35,651 0/0:29,0:29:69.20:0,69,876 0/0:27,0:28:78.25:0,78,1001 0/0:51,0:51:99:0,120,1562 0/0:27,0:27:81.24:0,81,1007 0/0:26,0:26:78.24:0,78,969 0/0:32,0:32:90.28:0,90,1137 0/0:34,0:34:99:0,99,1252 0/0:35,0:35:99:0,102,1276 0/0:29,0:29:78.24:0,78,985 0/0:22,0:22:63.20:0,63,811 0/0:30,0:30:81.24:0,81,1004 0/0:19,0:19:54.17:0,54,677 0/0:27,0:27:78.25:0,78,993 15 42434824 . C T 369.92 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.120;DP=2252;Dels=0.00;FS=2.191;HRun=0;HaplotypeScore=1.2712;InbreedingCoeff=-0.0120;MQ=58.92;MQ0=0;MQRankSum=0.299;QD=12.76;ReadPosRankSum=0.694 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,108,1256 0/0:33,0:33:96.26:0,96,1082 0/0:26,0:26:63.18:0,63,738 0/0:130,0:130:99:0,361,4385 0/0:82,0:82:99:0,226,2757 0/0:84,0:84:99:0,220,2652 0/0:63,0:63:99:0,171,2033 0/0:79,0:79:99:0,220,2703 0/0:47,0:47:99:0,129,1483 0/0:43,0:43:99:0,123,1394 0/0:35,0:35:99:0,99,1113 0/0:39,0:39:99:0,111,1250 0/0:35,0:35:99:0,99,1130 0/0:44,0:44:99:0,126,1411 0/0:134,0:134:99:0,337,3930 0/0:39,0:40:99:0,111,1226 0/0:52,0:52:99:0,141,1606 0/0:33,0:33:87.23:0,87,992 0/0:69,0:69:99:0,189,2154 0/0:76,0:76:99:0,211,2449 0/0:58,0:58:99:0,153,1772 0/0:42,0:42:99:0,114,1281 0/0:120,0:120:99:0,316,3913 0/0:56,0:56:99:0,153,1863 0/0:71,0:71:99:0,205,2512 0/0:58,0:58:99:0,153,1927 0/0:27,0:27:75.18:0,75,832 0/0:35,0:35:96.25:0,96,1077 0/0:29,0:29:75.21:0,75,874 0/0:39,0:39:99:0,105,1186 0/0:41,0:41:99:0,114,1293 0/0:57,0:57:99:0,150,1786 0/0:52,0:52:99:0,147,1679 0/0:40,0:40:99:0,111,1267 0/0:34,0:34:96.23:0,96,1089 0/0:42,1:43:85.66:0,86,1263 0/0:77,0:77:99:0,202,2348 0/0:39,0:39:99:0,102,1158 0/0:39,0:39:99:0,111,1246 0/0:39,0:39:99:0,108,1249 0/0:43,0:43:99:0,126,1416 0/1:15,14:29:99:416,0,434 15 42434837 . T C 47036.18 . AC=62;AF=0.738;AN=84;BaseQRankSum=-8.016;DP=2264;Dels=0.00;FS=4.154;HRun=0;HaplotypeScore=1.2168;InbreedingCoeff=0.0138;MQ=58.91;MQ0=0;MQRankSum=-1.120;QD=23.68;ReadPosRankSum=-2.620 GT:AD:DP:GQ:PL 1/1:0,31:31:90.25:1036,90,0 0/1:15,20:35:99:540,0,406 0/1:9,13:22:99:365,0,256 0/0:126,0:126:99:0,352,4239 0/0:82,0:83:99:0,238,2890 1/1:0,74:74:99:2596,214,0 0/1:28,28:57:99:864,0,824 1/1:0,69:69:99:2424,199,0 1/1:0,47:47:99:1493,129,0 1/1:0,44:44:99:1399,123,0 1/1:1,34:35:64.92:1065,65,0 1/1:0,42:42:99:1338,120,0 1/1:0,38:38:99:1168,102,0 1/1:0,41:41:99:1376,120,0 0/1:69,74:143:99:1834,0,1807 0/1:17,19:36:99:534,0,495 0/1:35,18:53:99:424,0,1037 1/1:0,34:34:99:1127,99,0 0/1:35,35:70:99:914,0,1028 0/1:43,34:77:99:872,0,1215 0/0:69,0:69:99:0,184,2254 0/1:20,23:43:99:576,0,533 0/1:47,59:106:99:1679,0,1314 1/1:0,63:63:99:2103,172,0 1/1:0,67:67:99:2442,199,0 1/1:2,58:60:95.12:1954,95,0 0/1:20,9:29:99:214,0,555 0/1:21,17:38:99:423,0,619 0/1:16,19:35:99:487,0,468 1/1:0,36:36:99:1187,105,0 1/1:0,43:43:99:1305,114,0 0/1:35,22:57:99:539,0,998 1/1:0,56:56:99:1844,159,0 0/1:24,21:45:99:537,0,706 1/1:0,38:38:99:1278,111,0 0/1:20,16:36:99:386,0,571 1/1:0,80:80:99:2507,211,0 1/1:0,45:45:99:1395,120,0 1/1:0,44:44:99:1310,117,0 1/1:0,42:42:99:1224,105,0 1/1:3,40:43:15.68:1195,16,0 1/1:0,32:32:93.27:1083,93,0 15 42439376 . G A 30110.82 . AC=50;AF=0.595;AN=84;BaseQRankSum=10.087;DP=1588;Dels=0.00;FS=3.395;HRun=0;HaplotypeScore=0.9777;InbreedingCoeff=-0.0871;MQ=58.65;MQ0=0;MQRankSum=-0.299;QD=21.57;ReadPosRankSum=2.499 GT:AD:DP:GQ:PL 0/1:12,13:25:99:396,0,317 0/1:18,17:35:99:408,0,391 0/1:9,12:21:99:348,0,208 1/1:0,101:101:99:3356,280,0 1/1:0,79:79:99:2597,211,0 0/1:37,28:65:99:812,0,998 1/1:0,49:49:99:1582,129,0 0/1:29,26:55:99:734,0,804 0/0:19,0:19:51.14:0,51,583 0/0:27,0:27:75.19:0,75,822 0/0:25,0:25:75.20:0,75,846 0/0:25,0:25:63.17:0,63,716 0/1:11,6:17:99:156,0,299 0/1:13,7:20:99:202,0,386 1/1:0,91:91:99:2756,226,0 0/1:21,10:31:99:256,0,590 1/1:0,26:26:72.22:866,72,0 0/1:7,9:16:99:215,0,186 0/1:24,24:49:99:710,0,470 0/1:20,31:51:99:933,0,461 0/1:18,31:50:99:927,0,400 0/0:30,0:30:84.16:0,84,894 0/1:57,40:97:99:1127,0,1613 0/1:25,21:46:99:571,0,702 0/0:66,0:66:99:0,168,2062 0/1:20,22:43:99:615,0,491 0/1:8,7:15:99:202,0,222 0/1:12,14:26:99:416,0,298 0/1:18,6:24:99:140,0,472 1/1:0,24:24:66.20:790,66,0 1/1:0,29:29:81.24:976,81,0 0/1:23,14:37:99:393,0,605 1/1:0,36:37:99:1246,105,0 1/1:0,24:24:69.21:835,69,0 0/1:7,14:21:99:388,0,179 0/1:12,10:22:99:245,0,319 1/1:0,52:52:99:1655,138,0 0/1:20,14:34:99:348,0,521 1/1:0,19:19:57.17:683,57,0 1/1:0,28:28:75.22:919,75,0 1/1:0,17:17:51.15:606,51,0 1/1:0,20:20:60.17:701,60,0 15 42439444 . C T 556.66 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.486;DP=2426;Dels=0.00;FS=0.791;HRun=1;HaplotypeScore=1.3001;InbreedingCoeff=-0.0120;MQ=59.11;MQ0=0;MQRankSum=1.505;QD=9.94;ReadPosRankSum=-1.265 GT:AD:DP:GQ:PL 0/0:31,0:31:81.22:0,81,1003 0/0:53,0:53:99:0,144,1768 0/0:33,0:33:93.29:0,93,1173 0/0:146,0:146:99:0,391,5108 0/0:115,0:115:99:0,328,4399 0/0:106,0:106:99:0,280,3764 0/0:63,0:63:99:0,169,2218 0/0:83,0:83:99:0,232,3139 0/0:35,0:35:99:0,99,1250 0/1:32,24:56:99:603,0,904 0/0:34,0:34:93.28:0,93,1169 0/0:33,0:33:84.27:0,84,1083 0/0:25,0:26:72.21:0,72,889 0/0:45,0:45:99:0,117,1492 0/0:122,0:122:99:0,310,3965 0/0:43,0:43:99:0,111,1410 0/0:45,0:46:99:0,117,1449 0/0:27,0:27:72.22:0,72,920 0/0:75,0:75:99:0,205,2561 0/0:98,0:98:99:0,268,3366 0/0:67,0:67:99:0,171,2107 0/0:32,0:32:90.28:0,90,1134 0/0:140,0:141:99:0,382,5087 0/0:67,0:67:99:0,178,2391 0/0:85,0:85:99:0,220,2929 0/0:66,0:66:99:0,172,2269 0/0:27,0:27:72.22:0,72,906 0/0:38,0:38:99:0,99,1260 0/0:29,0:30:78.23:0,78,989 0/0:30,0:30:87.28:0,87,1112 0/0:44,0:44:99:0,126,1585 0/0:98,0:98:99:0,253,3231 0/0:43,0:43:99:0,123,1521 0/0:43,0:43:99:0,117,1482 0/0:34,0:34:90.28:0,90,1140 0/0:36,0:37:99:0,105,1308 0/0:87,0:87:99:0,232,2899 0/0:40,0:40:99:0,114,1422 0/0:41,0:41:99:0,114,1439 0/0:37,0:37:99:0,111,1325 0/0:29,0:31:84.25:0,84,1056 0/0:38,0:38:99:0,102,1276 15 42439874 . G A 820.64 . 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T TC 613.02 . 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G C 272.33 . AC=10;AF=0.119;AN=84;BaseQRankSum=-11.176;DP=2189;DS;Dels=0.00;FS=832.607;HRun=1;HaplotypeScore=5.1057;InbreedingCoeff=-0.1471;MQ=59.11;MQ0=0;MQRankSum=-2.963;QD=0.65;ReadPosRankSum=-9.937 GT:AD:DP:GQ:PL 0/1:32,7:40:21.28:21,0,1088 0/0:29,8:37:19.49:0,19,889 0/1:30,5:35:46.74:47,0,869 0/0:62,14:77:99:0,160,2089 0/0:63,4:69:99:0,156,2024 0/0:44,12:56:99:0,126,1619 0/0:38,1:39:90.28:0,90,1163 0/0:53,0:53:99:0,144,1865 0/0:32,3:35:78.21:0,78,930 0/0:41,8:49:37.87:0,38,1312 0/0:34,3:37:81.22:0,81,982 0/0:38,10:48:48.66:0,49,1278 0/0:26,4:30:75.20:0,75,878 0/0:39,6:45:99:0,105,1292 0/0:94,22:117:2.79:0,0,3028 0/0:37,2:39:99:0,99,1220 0/0:48,1:49:99:0,120,1473 0/0:27,9:36:2.68:0,3,793 0/0:60,1:62:99:0,168,2059 0/0:82,15:97:99:0,128,2682 0/0:68,3:71:99:0,187,2315 0/0:54,3:57:99:0,153,1891 0/0:74,11:85:99:0,202,2610 0/0:41,4:45:99:0,111,1419 0/0:60,3:63:99:0,162,2069 0/0:47,2:49:99:0,129,1633 0/1:35,11:46:20.10:20,0,1114 0/0:30,2:32:78.22:0,78,950 0/1:37,8:45:44.46:44,0,1194 0/0:37,4:41:99:0,108,1320 0/0:32,6:38:53.84:0,54,1011 0/0:81,4:86:99:0,214,2581 0/0:64,12:76:41.93:0,42,2062 0/1:28,8:36:63.07:63,0,895 0/0:39,0:39:99:0,108,1277 0/1:35,7:42:45.04:45,0,1095 0/0:70,2:76:99:0,196,2401 0/1:31,7:38:30.44:30,0,941 0/1:31,11:42:8.68:9,0,893 0/1:39,10:49:85.27:85,0,1167 0/1:37,12:49:37.50:38,0,1156 0/0:27,7:34:16.46:0,16,878 15 42439944 . A C 1937.88 . AC=31;AF=0.369;AN=84;BaseQRankSum=-25.155;DP=2242;DS;Dels=0.00;FS=231.715;HRun=1;HaplotypeScore=2.3178;InbreedingCoeff=-0.5690;MQ=57.64;MQ0=0;MQRankSum=-3.201;QD=1.19;ReadPosRankSum=-2.441 GT:AD:DP:GQ:PL 0/1:14,27:41:36.77:37,0,364 0/0:17,18:35:21.43:0,21,482 0/0:16,13:30:15.46:0,15,412 0/1:23,53:76:48.34:48,0,518 0/0:41,50:91:24.39:0,24,953 0/0:21,38:60:20.42:0,20,467 0/1:21,30:51:42.27:42,0,498 0/1:18,26:44:9.20:9,0,392 0/1:26,22:49:2.80:3,0,642 0/1:24,25:49:38.96:39,0,591 0/1:18,26:44:20.94:21,0,446 0/1:24,13:37:10.71:11,0,673 0/1:10,15:25:70.36:70,0,272 0/1:20,21:41:23.73:24,0,542 0/1:58,68:126:99:164,0,1576 0/1:22,20:42:5.89:6,0,570 0/0:20,20:40:2.02:0,2,514 0/1:19,27:46:7.88:8,0,498 0/1:28,40:68:99:351,0,788 0/0:67,28:95:33.27:0,33,1636 0/1:33,48:81:99:212,0,927 0/1:26,29:55:21.29:21,0,623 0/1:27,58:85:99:105,0,533 0/1:20,22:42:13.89:14,0,444 0/0:25,34:60:13.01:0,13,599 0/0:23,31:54:21.43:0,21,477 0/1:23,16:40:69.96:70,0,514 0/1:15,28:43:99:123,0,368 0/0:22,20:42:8.81:0,9,584 0/1:17,22:39:89.71:90,0,454 0/1:16,16:32:4.12:4,0,457 0/1:54,40:94:1.20:1,0,1441 0/0:36,34:71:12.22:0,12,818 0/1:19,21:40:46.78:47,0,472 0/1:22,23:46:20.14:20,0,633 0/1:22,26:49:49.45:49,0,506 0/1:37,38:76:99:234,0,1040 0/1:12,22:34:39.46:39,0,304 0/1:19,30:49:50.19:50,0,544 0/1:19,27:46:99:117,0,412 0/0:21,13:34:0.79:0,1,505 0/1:21,18:39:75.49:75,0,485 15 42442823 . G C 619.49 . AC=4;AF=0.048;AN=84;BaseQRankSum=1.320;DP=1024;Dels=0.00;FS=9.737;HRun=1;HaplotypeScore=0.6492;InbreedingCoeff=-0.0503;MQ=59.02;MQ0=0;MQRankSum=2.747;QD=9.25;ReadPosRankSum=0.140 GT:AD:DP:GQ:PL 0/0:16,0:16:45.13:0,45,539 0/0:11,0:11:30.09:0,30,373 0/0:18,0:18:48.15:0,48,617 0/0:58,0:58:99:0,129,1774 0/0:23,0:23:60.19:0,60,808 0/1:5,6:11:99:143,0,169 0/1:11,4:15:94.07:94,0,276 0/1:11,9:20:99:262,0,287 0/0:19,0:19:48.15:0,48,622 0/0:16,0:16:42.13:0,42,533 0/0:22,0:22:42.13:0,42,539 0/0:31,0:31:84.27:0,84,1074 0/0:7,0:7:21.07:0,21,267 0/0:23,0:23:63.20:0,63,807 0/0:88,0:88:99:0,220,2785 0/0:20,0:20:57.18:0,57,717 0/0:20,0:20:54.17:0,54,699 0/0:21,0:21:54.17:0,54,698 0/0:43,0:43:99:0,111,1430 0/0:50,0:51:99:0,117,1505 0/0:43,0:43:99:0,108,1353 0/0:11,0:11:24.07:0,24,301 0/0:30,0:30:78.26:0,78,1077 0/0:10,0:10:24.08:0,24,328 0/0:26,0:26:60.20:0,60,833 0/0:14,0:14:36.12:0,36,490 0/0:13,0:13:30.10:0,30,398 0/1:13,8:21:99:207,0,333 0/0:27,0:27:69.22:0,69,891 0/0:21,0:21:54.17:0,54,701 0/0:17,0:17:48.14:0,48,603 0/0:31,0:31:81.25:0,81,1033 0/0:24,0:24:69.21:0,69,852 0/0:28,0:28:72.22:0,72,911 0/0:23,1:24:27.07:0,27,724 0/0:28,0:28:72.23:0,72,933 0/0:27,0:27:72.23:0,72,903 0/0:17,0:17:48.15:0,48,599 0/0:16,0:16:42.13:0,42,531 0/0:27,0:27:78.19:0,78,941 0/0:16,0:16:48.15:0,48,616 0/0:20,0:20:54.17:0,54,681 15 42476807 . A C 346.61 . 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C T 6680.59 . 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C G 41996.39 . 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T C 90663.15 . 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G A 2639.02 . 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C T 788.03 . 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G A 883.64 . 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C T 1982.38 . 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G A 2363.84 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.173;DP=3579;DS;Dels=0.00;FS=1.388;HRun=1;HaplotypeScore=2.2345;InbreedingCoeff=-0.0244;MQ=59.40;MQ0=0;MQRankSum=1.009;QD=13.13;ReadPosRankSum=0.443 GT:AD:DP:GQ:PL 0/0:72,0:72:99:0,199,2423 0/0:66,0:66:99:0,181,2210 0/0:71,0:71:99:0,205,2471 0/0:125,0:125:99:0,322,4177 0/0:102,0:102:99:0,283,3695 0/1:49,51:100:99:1457,0,1419 0/0:80,0:80:99:0,220,2865 0/1:44,36:80:99:969,0,1238 0/0:67,0:67:99:0,193,2296 0/0:68,0:68:99:0,199,2348 0/0:67,0:67:99:0,193,2317 0/0:71,0:71:99:0,199,2423 0/0:66,0:66:99:0,178,2148 0/0:89,0:90:99:0,259,3129 0/0:223,1:225:99:0,602,7252 0/0:58,0:58:99:0,156,1892 0/0:77,0:77:99:0,214,2613 0/0:55,0:55:99:0,156,1850 0/0:111,0:113:99:0,295,3521 0/0:141,0:141:99:0,373,4557 0/0:126,1:129:99:0,343,4133 0/0:75,0:75:99:0,199,2417 0/0:104,0:104:99:0,286,3722 0/0:74,0:74:99:0,208,2679 0/0:86,0:86:99:0,226,2971 0/0:80,0:80:99:0,214,2793 0/0:55,0:55:99:0,144,1764 0/0:85,0:85:99:0,232,2859 0/0:58,0:58:99:0,159,1907 0/0:82,0:82:99:0,229,2774 0/0:73,0:73:99:0,205,2469 0/0:112,0:112:99:0,298,3648 0/0:92,0:94:99:0,244,2934 0/0:66,0:66:99:0,190,2307 0/0:62,0:62:99:0,172,2096 0/0:78,0:78:99:0,220,2578 0/0:102,0:103:99:0,265,3169 0/0:70,1:71:99:0,154,2217 0/0:70,1:71:99:0,178,2432 0/0:71,0:71:99:0,214,2498 0/0:76,0:76:99:0,208,2516 0/0:80,0:80:99:0,238,2842 15 42840322 . G A 3300.66 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.149;DP=3598;Dels=0.00;FS=16.009;HRun=1;HaplotypeScore=1.6342;InbreedingCoeff=-0.0244;MQ=59.34;MQ0=0;MQRankSum=0.078;QD=15.95;ReadPosRankSum=0.330 GT:AD:DP:GQ:PL 0/0:73,0:73:99:0,199,2546 0/0:49,0:49:99:0,144,1828 0/0:57,0:57:99:0,166,2099 0/0:173,0:173:99:0,482,6494 0/0:129,0:129:99:0,367,5022 0/1:54,53:107:99:1624,0,1791 0/0:124,0:124:99:0,331,4563 0/1:47,53:100:99:1676,0,1589 0/0:63,0:63:99:0,187,2338 0/0:60,0:60:99:0,169,2146 0/0:61,0:61:99:0,178,2279 0/0:50,0:50:99:0,141,1813 0/0:57,0:57:99:0,150,1900 0/0:68,0:68:99:0,205,2601 0/0:220,1:221:99:0,554,7523 0/0:65,0:66:99:0,187,2406 0/0:51,0:51:99:0,147,1885 0/0:71,0:71:99:0,199,2551 0/0:115,0:115:99:0,328,4150 0/0:119,0:119:99:0,322,4148 0/0:137,0:138:99:0,379,4797 0/0:74,0:74:99:0,205,2618 0/0:149,0:149:99:0,415,5740 0/0:115,0:115:99:0,331,4494 0/0:111,0:111:99:0,313,4261 0/0:103,0:103:99:0,283,3895 0/0:67,0:67:99:0,181,2322 0/0:61,0:61:99:0,178,2264 0/0:49,0:49:99:0,141,1789 0/0:56,0:56:99:0,160,2037 0/0:55,0:55:99:0,150,1942 0/0:126,0:126:99:0,325,4255 0/0:81,0:81:99:0,214,2701 0/0:55,0:55:99:0,157,2010 0/0:48,0:48:99:0,138,1763 0/0:65,0:65:99:0,178,2321 0/0:88,0:88:99:0,250,3098 0/0:76,0:76:99:0,214,2724 0/0:61,0:61:99:0,169,2161 0/0:88,0:88:99:0,250,3201 0/0:62,0:62:99:0,169,2168 0/0:55,0:55:99:0,166,2107 15 43017426 . T G 15931.10 . AC=18;AF=0.214;AN=84;BaseQRankSum=24.899;DP=2345;Dels=0.00;FS=14.962;HRun=1;HaplotypeScore=1.2183;InbreedingCoeff=0.1515;MQ=59.14;MQ0=0;MQRankSum=0.426;QD=17.84;ReadPosRankSum=2.338 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1575,120,0 0/1:32,18:50:99:464,0,822 0/0:49,1:50:93.04:0,93,1494 0/1:56,45:101:99:1381,0,1562 0/0:98,0:98:99:0,280,3282 0/1:36,28:64:99:852,0,975 0/0:48,0:48:99:0,132,1570 0/1:29,28:57:99:844,0,836 0/0:31,0:32:75.23:0,75,910 0/1:28,22:50:99:593,0,752 0/0:42,0:43:99:0,105,1276 0/0:50,0:50:99:0,135,1584 0/0:33,0:33:96.28:0,96,1125 0/0:42,0:43:99:0,111,1320 0/1:73,97:170:99:2536,0,1743 0/0:41,0:41:99:0,108,1253 0/1:22,19:41:99:529,0,636 0/0:43,0:43:99:0,111,1316 0/0:62,3:65:99:0,159,1905 0/0:76,0:77:99:0,196,2341 0/0:59,0:61:99:0,153,1824 0/0:46,2:48:46.32:0,46,1308 1/1:0,93:93:99:3571,265,0 0/0:56,0:56:99:0,150,1775 0/0:74,0:74:99:0,208,2423 0/0:49,0:49:99:0,135,1577 0/1:15,11:26:99:304,0,434 0/1:14,17:31:99:496,0,363 0/0:51,0:51:99:0,129,1554 0/0:49,0:49:99:0,132,1581 0/0:35,0:35:96.26:0,96,1128 0/0:75,0:75:99:0,184,2281 0/0:51,0:51:99:0,138,1598 0/0:50,0:50:99:0,138,1642 0/1:18,17:35:99:465,0,474 0/0:66,0:66:99:0,169,2066 0/1:31,21:52:99:576,0,867 0/0:57,0:57:99:0,156,1774 1/1:0,36:36:99:1308,105,0 0/0:53,0:53:99:0,141,1689 0/1:24,16:40:99:437,0,636 0/0:54,0:54:99:0,144,1722 15 43020983 . G A 7190.96 . AC=12;AF=0.143;AN=84;BaseQRankSum=-0.525;DP=1621;Dels=0.00;FS=7.718;HRun=0;HaplotypeScore=1.2839;InbreedingCoeff=0.4167;MQ=59.38;MQ0=0;MQRankSum=0.224;QD=19.49;ReadPosRankSum=2.215 GT:AD:DP:GQ:PL 1/1:0,32:33:81.21:952,81,0 0/1:22,14:36:99:388,0,587 0/0:30,0:30:78.23:0,78,924 0/1:39,27:66:99:742,0,1080 0/0:69,0:69:99:0,184,2314 0/0:57,0:57:99:0,144,1778 0/0:32,0:32:84.24:0,84,1036 0/0:52,0:52:99:0,144,1804 0/0:37,0:37:99:0,102,1180 0/0:29,0:29:81.22:0,81,926 0/0:35,0:36:87.25:0,87,1039 0/0:25,0:25:63.18:0,63,729 0/0:24,0:24:66.15:0,66,732 0/0:25,0:25:69.20:0,69,816 0/0:102,0:102:99:0,268,3058 0/0:31,0:31:81.20:0,81,944 0/0:27,0:27:78.20:0,78,883 0/0:24,0:24:63.18:0,63,752 0/0:55,0:57:99:0,138,1564 0/0:45,0:45:99:0,108,1269 0/0:62,0:63:99:0,156,1824 0/0:30,0:30:81.19:0,81,925 1/1:0,70:71:99:2242,193,0 0/0:37,0:37:96.29:0,96,1206 0/0:42,0:42:99:0,105,1292 0/0:41,0:41:99:0,108,1346 0/1:18,9:27:99:214,0,412 0/1:15,23:38:99:662,0,324 0/0:24,0:24:63.18:0,63,745 0/0:22,0:22:54.12:0,54,599 0/0:30,0:30:84.21:0,84,958 0/0:46,0:46:99:0,111,1353 0/0:36,0:36:90.23:0,90,1060 0/0:33,0:34:87.21:0,87,1009 0/1:15,13:28:99:312,0,427 0/0:28,0:28:72.20:0,72,835 0/1:16,21:37:99:569,0,379 0/0:22,0:22:63.15:0,63,709 1/1:0,33:33:99:1110,99,0 0/0:32,0:32:87.23:0,87,990 0/0:29,0:29:78.22:0,78,923 0/0:34,0:34:84.24:0,84,1023 15 43021486 . T G 245.77 . AC=10;AF=0.119;AN=84;BaseQRankSum=-17.761;DP=1677;Dels=0.00;FS=131.426;HRun=5;HaplotypeScore=2.2496;InbreedingCoeff=-0.1787;MQ=58.79;MQ0=0;MQRankSum=-1.933;QD=0.63;ReadPosRankSum=5.060 GT:AD:DP:GQ:PL 0/0:12,18:30:36.06:0,36,404 0/0:23,13:36:47.43:0,47,712 0/0:20,15:35:1.28:0,1,532 0/0:51,34:86:99:0,125,1633 0/0:36,32:69:49.10:0,49,1095 0/0:30,29:59:36.83:0,37,865 0/0:25,25:51:24.78:0,25,647 0/0:29,20:49:39.84:0,40,874 0/0:19,12:31:54.11:0,54,583 0/0:22,16:38:8.92:0,9,617 0/0:18,14:32:25.37:0,25,460 0/0:17,16:34:45.09:0,45,483 0/0:13,11:25:9.35:0,9,309 0/0:21,17:38:28.44:0,28,515 0/1:43,44:87:91.47:91,0,1184 0/1:16,16:32:10.08:10,0,388 0/0:18,16:34:22.45:0,22,481 0/0:11,16:28:6.36:0,6,269 0/1:29,22:51:24.37:24,0,741 0/0:37,29:66:83.52:0,84,1152 0/1:17,20:37:84.99:85,0,436 0/0:17,16:34:22:0,22,475 0/0:47,17:65:95.60:0,96,1292 0/1:26,20:46:45.65:46,0,697 0/0:29,30:59:62.47:0,62,898 0/0:21,20:41:60.16:0,60,690 0/1:14,12:26:9.23:9,0,380 0/0:19,15:34:25.57:0,26,563 0/0:11,14:25:9.42:0,9,347 0/0:10,16:26:2.69:1,0,213 0/1:18,12:30:21.97:22,0,433 0/0:37,22:59:71.77:0,72,1104 0/1:10,15:26:27.98:28,0,243 0/1:17,13:30:11.02:11,0,446 0/0:14,12:26:38.96:0,39,403 0/0:13,8:21:11.39:0,11,356 0/0:21,12:33:1:6,0,609 0/0:14,13:27:14.38:0,14,373 0/0:11,14:25:4.32:0,4,216 0/0:23,20:43:35.45:0,35,610 0/1:12,11:23:41.75:42,0,305 0/0:13,17:30:2.61:0,3,311 15 43023407 . A C 148.42 . AC=6;AF=0.071;AN=84;BaseQRankSum=-23.673;DP=4080;Dels=0.00;FS=2759.628;HRun=2;HaplotypeScore=2.1809;InbreedingCoeff=-0.1054;MQ=59.08;MQ0=0;MQRankSum=0.554;QD=0.27;ReadPosRankSum=-23.000 GT:AD:DP:GQ:PL 0/0:48,19:67:71.84:0,72,1499 0/0:55,24:79:0.96:6,0,1714 0/1:35,16:53:78.26:78,0,1023 0/0:110,74:184:94.42:0,94,3530 0/0:103,47:150:72.40:0,72,3194 0/0:102,36:138:43.92:0,44,3310 0/0:69,34:103:82.24:0,82,2326 0/0:94,51:146:99:0,177,3064 0/0:68,35:103:83.87:0,84,2134 0/0:31,18:49:89.47:0,89,1031 0/0:53,23:76:14.43:0,14,1676 0/0:56,31:87:99:0,115,1864 0/0:34,15:49:52.53:0,53,1150 0/0:55,25:80:28.35:0,28,1712 0/0:164,69:233:99:0,197,5110 0/1:49,25:74:31.39:31,0,1569 0/0:57,19:76:75.43:0,75,1874 0/0:48,20:68:44.46:0,44,1572 0/0:82,32:114:35.99:0,36,2556 0/0:88,39:128:42.63:0,43,2867 0/1:73,33:106:43.01:43,0,2214 0/0:64,28:92:99:0,104,2027 0/0:130,53:183:99:0,127,4165 0/1:77,45:122:25.28:25,0,2400 0/0:83,46:129:99:0,128,2693 0/0:79,38:117:99:0,107,2580 0/0:38,15:53:54.08:0,54,1150 0/0:55,12:67:99:0,162,1919 0/0:57,17:74:17.03:0,17,1869 0/0:47,25:72:26.14:0,26,1470 0/0:57,17:74:99:0,106,1801 0/0:76,43:119:99:0,150,2463 0/0:53,29:83:2.80:0,0,1585 0/0:62,17:79:16.18:0,16,1943 0/0:42,27:69:2.10:2,0,1319 0/0:65,26:91:99:0,120,2155 0/1:79,35:114:17.54:18,0,2373 0/1:57,32:89:54.21:54,0,1596 0/0:51,24:75:30.90:0,31,1662 0/0:62,17:79:99:0,103,2071 0/0:39,16:55:25.49:0,25,1197 0/0:58,23:81:87.01:0,87,1904 15 43023482 . T C 21323.83 . AC=16;AF=0.190;AN=84;BaseQRankSum=-7.422;DP=3278;DS;Dels=0.00;FS=9.800;HRun=2;HaplotypeScore=1.3142;InbreedingCoeff=0.2279;MQ=59.37;MQ0=0;MQRankSum=-0.494;QD=19.07;ReadPosRankSum=-0.284 GT:AD:DP:GQ:PL 1/1:1,63:64:99:2059,153,0 0/1:35,34:69:99:904,0,1050 0/0:47,0:47:99:0,132,1615 0/1:69,79:148:99:2373,0,2076 0/0:137,0:137:99:0,388,4857 0/1:46,54:100:99:1704,0,1446 0/0:76,1:77:99:0,220,2734 0/1:60,58:118:99:1632,0,1871 0/0:56,0:56:99:0,165,2003 0/1:33,24:57:99:660,0,1001 0/0:54,0:54:99:0,156,1931 0/0:56,0:56:99:0,163,1989 0/0:40,0:40:99:0,114,1381 0/0:68,0:68:99:0,196,2429 0/0:189,0:189:99:0,521,6372 0/0:61,1:62:99:0,159,2168 0/0:74,0:74:99:0,211,2570 0/0:55,2:57:99:0,109,1822 0/0:90,1:91:99:0,235,2876 0/0:119,0:119:99:0,331,4079 0/0:89,0:90:99:0,241,2966 0/0:67,0:67:99:0,181,2232 1/1:0,149:149:99:5351,430,0 0/0:85,0:85:99:0,238,2997 0/0:89,0:89:99:0,256,3231 0/1:58,42:101:99:1185,0,1727 0/1:26,25:52:99:679,0,772 0/1:29,29:58:99:796,0,842 0/0:65,0:65:99:0,190,2307 0/0:59,0:59:99:0,156,1935 0/0:56,0:56:99:0,162,2004 0/0:89,0:90:99:0,253,3123 0/0:44,0:44:99:0,123,1524 0/0:58,0:58:99:0,172,2105 0/1:31,26:57:99:726,0,894 0/0:77,0:77:99:0,223,2758 0/1:40,42:83:99:1121,0,1106 0/0:53,0:53:99:0,153,1877 1/1:0,62:62:99:2134,183,0 0/0:73,0:74:99:0,211,2609 0/0:53,2:55:80.09:0,80,1760 0/0:68,0:68:99:0,196,2413 15 43109278 . A C 141.87 . AC=9;AF=0.107;AN=84;BaseQRankSum=-23.112;DP=1620;Dels=0.00;FS=489.884;HRun=2;HaplotypeScore=1.1979;InbreedingCoeff=-0.1491;MQ=59.09;MQ0=0;MQRankSum=0.933;QD=0.48;ReadPosRankSum=-13.279 GT:AD:DP:GQ:PL 0/1:26,14:40:13.39:13,0,779 0/0:27,19:46:63.19:0,63,774 0/0:29,12:41:31.02:0,31,959 0/0:33,22:55:49.68:0,50,918 0/0:26,15:41:44.53:0,45,833 0/0:26,14:40:34.96:0,35,758 0/0:22,6:29:53.05:0,53,692 0/0:28,11:39:75.23:0,75,948 0/0:24,10:34:14.05:0,14,794 0/0:24,9:34:50.52:0,51,843 0/0:20,7:27:6.81:0,7,603 0/1:13,8:21:19.64:20,0,343 0/0:27,13:40:6.06:0,6,680 0/1:19,9:28:12.92:13,0,485 0/0:80,55:135:57.15:0,57,2299 0/0:25,9:34:33.61:0,34,753 0/0:18,16:34:2.75:1,0,522 0/1:16,12:28:8.18:8,0,458 0/0:29,13:42:53.82:0,54,982 0/0:31,7:38:77.87:0,78,889 0/0:35,21:56:1.32:5,0,1039 0/0:15,2:17:45.11:0,45,517 0/0:30,25:55:23.97:0,24,908 0/0:19,16:35:2.46:0,2,559 0/1:17,24:41:20.86:21,0,546 0/0:15,12:27:17.47:0,17,504 0/0:20,9:29:33.30:0,33,669 0/0:22,9:31:57.17:0,57,687 0/0:24,23:47:40.76:0,41,675 0/0:19,12:31:10.79:0,11,575 0/1:19,17:36:28.16:28,0,572 0/0:39,15:54:48.96:0,49,1122 0/0:24,13:37:65.65:0,66,751 0/1:18,10:28:10.10:10,0,446 0/1:16,14:30:66.37:66,0,473 0/0:26,8:34:42.99:0,43,896 0/0:28,2:30:78.21:0,78,929 0/1:24,17:41:79.68:80,0,670 0/0:20,14:34:40.46:0,40,687 0/0:25,15:40:10.12:0,10,725 0/0:18,11:29:29.45:0,29,547 0/0:14,17:31:39.11:0,39,472 15 43109278 . A AC 484.12 . 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A G 29730.38 . 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G C 10934.15 . 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T G 1001.45 . 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A T 40040.54 . 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A G 1491.70 . AC=1;AF=0.012;AN=84;BaseQRankSum=5.365;DP=7033;DS;Dels=0.00;FS=1.021;HRun=0;HaplotypeScore=2.7700;InbreedingCoeff=-0.0120;MQ=59.60;MQ0=0;MQRankSum=1.464;QD=12.97;ReadPosRankSum=0.031 GT:AD:DP:GQ:PL 0/0:125,0:125:99:0,355,4323 0/0:121,0:121:99:0,322,4004 0/0:120,0:120:99:0,307,3799 0/0:249,0:249:99:0,644,8146 0/0:240,0:240:99:0,626,8013 0/0:243,0:244:99:0,650,8403 0/0:238,0:239:99:0,605,7879 0/0:242,0:242:99:0,608,7814 0/0:147,0:147:99:0,397,4857 0/0:135,0:136:99:0,367,4450 0/0:106,0:106:99:0,277,3416 0/0:148,0:148:99:0,403,4893 0/0:139,0:139:99:0,367,4529 0/1:57,57:115:99:1538,0,1607 0/0:250,0:250:99:0,665,8053 0/0:98,0:98:99:0,271,3276 0/0:115,0:115:99:0,313,3812 0/0:126,0:126:99:0,337,4160 0/0:250,0:250:99:0,641,7935 0/0:211,0:212:99:0,524,6630 0/0:227,0:229:99:0,587,7178 0/0:117,0:117:99:0,304,3745 0/0:243,0:243:99:0,641,8147 0/0:244,0:247:99:0,620,8059 0/0:250,0:250:99:0,620,8058 0/0:248,0:249:99:0,632,8103 0/0:84,0:86:99:0,226,2743 0/0:125,0:125:99:0,331,4072 0/0:103,0:103:99:0,289,3518 0/0:150,0:150:99:0,394,4868 0/0:124,0:125:99:0,343,4222 0/0:239,0:240:99:0,632,7867 0/0:140,0:141:99:0,343,4299 0/0:134,0:134:99:0,370,4540 0/0:144,0:144:99:0,376,4670 0/0:123,0:123:99:0,331,4068 0/0:233,0:235:99:0,614,7556 0/0:140,0:140:99:0,367,4473 0/0:137,0:137:99:0,382,4680 0/0:116,1:117:99:0,322,3985 0/0:123,0:123:99:0,334,4096 0/0:153,0:153:99:0,394,4941 15 43821989 . A C 333.73 . AC=12;AF=0.143;AN=84;BaseQRankSum=-15.822;DP=2007;DS;Dels=0.00;FS=283.043;HRun=3;HaplotypeScore=1.5391;InbreedingCoeff=-0.1976;MQ=57.98;MQ0=0;MQRankSum=-1.605;QD=0.74;ReadPosRankSum=-2.814 GT:AD:DP:GQ:PL 0/0:26,19:45:41.77:0,42,787 0/0:16,13:29:45.12:0,45,518 0/1:20,15:36:26.66:27,0,565 0/0:54,46:100:99:0,125,1753 0/0:45,45:90:41.83:0,42,1433 0/0:46,48:94:60.56:0,61,1555 0/0:36,31:67:41.06:0,41,1019 0/0:41,23:65:99:0,117,1306 0/1:13,12:25:9.26:9,0,366 0/0:20,14:34:4.92:0,5,575 0/0:16,17:33:21.45:0,21,490 0/0:17,15:32:17.72:0,18,529 0/0:17,8:25:16.58:0,17,483 0/0:25,24:49:16.88:0,17,748 0/0:72,43:115:23.64:0,24,2107 0/0:20,17:37:26.56:0,27,584 0/0:19,21:40:2.62:1,0,500 0/0:17,14:31:45.09:0,45,493 0/1:20,24:44:57.40:57,0,596 0/0:32,22:54:35.44:0,35,1043 0/1:19,20:40:63.17:63,0,601 0/1:17,27:44:78.93:79,0,461 0/0:59,55:114:99:0,110,1952 0/1:29,23:52:12.15:12,0,802 0/0:43,33:76:45.28:0,45,1239 0/0:27,22:49:29.54:0,30,834 0/1:13,12:26:66.02:66,0,332 0/1:21,17:38:30.43:30,0,643 0/0:13,13:26:17.42:0,17,420 0/0:22,12:34:11.90:0,12,677 0/0:21,24:45:58.96:0,59,656 0/1:28,28:56:18.06:18,0,799 0/0:25,19:44:72.13:0,72,787 0/0:26,9:36:75.22:0,75,886 0/0:26,16:42:71:0,71,797 0/0:27,14:41:1.60:4,0,794 0/0:23,16:40:25.52:0,26,684 0/1:8,14:22:42.54:43,0,204 0/1:14,18:32:4.28:4,0,419 0/0:25,17:42:39.69:0,40,755 0/0:14,16:30:1.70:3,0,442 0/1:14,19:33:57.27:57,0,445 15 43903129 . A G 58.63 . AC=1;AF=0.012;AN=84;BaseQRankSum=10.840;DP=6006;DS;Dels=0.00;FS=93.218;HRun=0;HaplotypeScore=3.2065;InbreedingCoeff=-0.0120;MQ=32.20;MQ0=13;MQRankSum=4.589;QD=1.25;ReadPosRankSum=0.213 GT:AD:DP:GQ:PL 0/0:80,0:80:99:0,219,2113 0/0:171,0:172:99:0,432,4253 0/0:130,0:131:99:0,318,3195 0/0:250,0:250:99:0,616,6341 0/0:233,1:235:99:0,574,5881 0/0:247,0:247:99:0,568,5782 0/0:167,1:168:99:0,376,3883 0/0:177,0:177:99:0,418,4147 0/0:49,2:51:65.31:0,65,1188 0/0:153,0:153:99:0,378,3690 0/0:54,1:55:99:0,123,1442 0/0:133,1:135:99:0,351,3441 0/0:85,1:87:99:0,201,2256 0/0:141,1:142:99:0,339,3559 0/0:249,1:250:99:0,573,5876 0/0:172,0:173:99:0,435,4178 0/0:147,1:149:99:0,330,3426 0/0:212,0:212:99:0,553,5343 0/0:140,0:140:99:0,333,3302 0/0:78,0:79:99:0,219,2170 0/0:210,2:212:99:0,435,4796 0/0:165,0:165:99:0,394,3968 0/0:194,15:209:45.87:0,46,4056 0/0:105,1:106:99:0,267,2943 0/0:145,2:148:99:0,345,3783 0/0:171,1:172:99:0,375,4255 0/1:40,7:47:99:105,0,940 0/0:147,1:148:99:0,324,3444 0/0:108,7:115:78.82:0,79,2448 0/0:100,2:102:99:0,200,2498 0/0:123,1:124:99:0,291,3213 0/0:170,1:171:99:0,418,4327 0/0:117,1:118:99:0,267,3015 0/0:119,1:121:99:0,327,3291 0/0:142,0:143:99:0,369,3648 0/0:111,1:112:99:0,309,3065 0/0:140,2:142:99:0,315,3683 0/0:128,0:128:99:0,345,3382 0/0:117,0:117:99:0,315,3090 0/0:110,0:110:99:0,285,2846 0/0:112,2:114:99:0,237,2643 0/0:95,1:96:99:0,231,2520 15 43924420 . C T 338.79 . AC=4;AF=0.048;AN=84;BaseQRankSum=-1.167;DP=4298;DS;Dels=0.00;FS=228.565;HRun=0;HaplotypeScore=1.6268;InbreedingCoeff=-0.0650;MQ=57.34;MQ0=11;MQRankSum=-15.398;QD=0.99;ReadPosRankSum=1.040 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,184,2146 0/0:82,0:82:99:0,205,2466 0/1:76,13:89:99:158,0,2187 0/0:151,0:151:99:0,403,5079 0/0:144,0:144:99:0,373,4816 0/0:144,0:144:99:0,352,4570 0/0:117,0:117:99:0,310,3908 0/0:146,0:146:99:0,370,4810 0/0:91,2:93:99:0,219,2872 0/0:82,0:82:99:0,223,2583 0/1:78,15:93:99:212,0,2216 0/0:98,0:98:99:0,274,3180 0/0:76,0:76:99:0,208,2412 0/0:79,0:79:99:0,223,2543 0/0:230,1:232:99:0,599,7119 0/0:69,0:69:99:0,186,2179 0/0:78,0:78:99:0,208,2452 0/0:85,0:85:99:0,247,2823 0/0:130,0:131:99:0,331,3953 0/0:137,0:137:99:0,358,4221 0/0:119,1:121:99:0,246,3375 0/0:76,0:76:99:0,211,2422 0/0:163,0:164:99:0,418,5351 0/0:124,0:124:99:0,319,4051 0/0:137,0:137:99:0,349,4503 0/0:120,0:120:99:0,325,4114 0/0:56,5:61:9.09:0,9,1677 0/0:84,7:91:86.43:0,86,2542 0/0:79,0:79:99:0,211,2482 0/0:79,8:87:6.66:0,7,2380 0/0:55,5:60:0.68:8,0,1531 0/0:128,1:129:99:0,284,3797 0/0:79,0:79:99:0,226,2540 0/1:71,7:78:17.42:17,0,2087 0/0:86,13:99:55.11:0,55,2569 0/0:88,0:88:99:0,238,2786 0/0:107,0:107:99:0,268,3169 0/0:87,0:87:99:0,226,2675 0/1:74,8:82:35.24:35,0,2103 0/0:80,8:88:67.47:0,67,2389 0/0:60,0:60:99:0,177,2003 0/0:81,7:88:46.11:0,46,2524 15 43924422 . T C 303.64 . AC=5;AF=0.060;AN=84;BaseQRankSum=6.358;DP=4269;DS;Dels=0.00;FS=259.544;HRun=0;HaplotypeScore=1.7947;InbreedingCoeff=-0.0821;MQ=57.44;MQ0=11;MQRankSum=-15.851;QD=0.74;ReadPosRankSum=0.830 GT:AD:DP:GQ:PL 0/0:67,0:68:99:0,181,2240 0/0:78,0:80:99:0,196,2435 0/1:74,12:86:96.62:97,0,2300 0/0:142,0:142:99:0,385,4802 0/0:142,0:142:99:0,370,4755 0/0:141,0:141:99:0,352,4674 0/0:111,0:111:99:0,304,3891 0/0:141,0:141:99:0,364,4694 0/0:91,2:93:99:0,216,2983 0/0:82,0:82:99:0,220,2662 0/1:79,15:94:99:209,0,2413 0/0:98,0:98:99:0,265,3257 0/0:74,0:74:99:0,205,2498 0/0:81,0:81:99:0,232,2802 0/0:232,0:233:99:0,605,7433 0/0:69,0:69:99:0,187,2286 0/0:80,0:80:99:0,214,2641 0/0:84,0:84:99:0,241,2912 0/0:128,0:129:99:0,343,4290 0/0:136,0:136:99:0,361,4489 0/0:125,0:125:99:0,295,3762 0/0:77,0:77:99:0,208,2523 0/0:163,1:164:99:0,424,5405 0/0:119,0:119:99:0,316,4071 0/0:136,0:137:99:0,349,4526 0/0:121,0:121:99:0,331,4209 0/0:55,6:61:2.26:2,0,1673 0/0:82,7:89:80.52:0,81,2689 0/0:79,0:79:99:0,211,2620 0/1:80,9:89:23.73:24,0,2445 0/1:57,6:63:29.08:29,0,1727 0/0:127,0:127:99:0,319,4080 0/0:78,0:78:99:0,229,2749 0/0:73,7:80:1.05:6,0,2237 0/0:87,13:100:31.58:0,32,2753 0/0:86,0:86:99:0,235,2895 0/0:107,0:107:99:0,277,3434 0/0:87,0:87:99:0,229,2819 0/1:71,8:79:39.07:39,0,2154 0/0:80,8:88:67.55:0,68,2552 0/0:56,0:56:99:0,169,2041 0/0:86,7:93:58.18:0,58,2744 15 43925134 . T A 11843.40 . AC=29;AF=0.345;AN=84;BaseQRankSum=5.196;DP=5573;DS;Dels=0.00;FS=7.887;HRun=0;HaplotypeScore=0.2790;InbreedingCoeff=0.1047;MQ=14.96;MQ0=4094;MQRankSum=-2.547;QD=3.83;ReadPosRankSum=2.038 GT:AD:DP:GQ:PL 0/0:116,0:116:87.18:0,87,954 0/1:100,15:115:99:120,0,288 0/1:82,29:111:99:191,0,505 1/1:97,78:175:99:1204,105,0 0/1:140,55:195:99:769,0,731 1/1:78,82:160:99:1564,102,0 0/1:127,44:171:99:443,0,827 0/1:148,49:197:99:522,0,638 0/0:130,1:131:75.18:0,75,828 0/1:74,30:104:99:261,0,429 0/0:103,0:104:78.19:0,78,863 0/1:78,21:100:99:356,0,388 0/0:105,0:105:33.08:0,33,365 0/1:84,19:103:99:249,0,587 1/1:135,109:244:99:1391,126,0 1/1:35,27:62:42.10:464,42,0 1/1:47,43:90:51.15:586,51,0 1/1:35,48:83:54.15:621,54,0 0/1:117,47:164:99:417,0,394 0/0:153,0:153:99:0,108,1224 0/1:100,35:135:99:453,0,533 0/1:54,26:80:99:273,0,319 0/1:163,43:206:99:635,0,1052 0/0:214,0:214:99:0,202,2307 0/0:211,0:211:99:0,153,1837 0/1:146,40:186:99:355,0,833 0/0:99,0:100:48.13:0,48,543 0/1:79,27:106:99:482,0,105 0/1:80,18:98:99:108,0,476 0/0:111,0:111:81.21:0,81,933 0/0:86,0:86:72.20:0,72,834 0/0:134,0:134:93.25:0,93,1071 0/0:114,0:114:42.11:0,42,489 0/0:134,0:134:84.19:0,84,916 0/1:83,24:108:99:103,0,438 0/0:142,0:142:72.18:0,72,802 0/0:155,0:155:63.16:0,63,722 0/0:122,0:122:69.13:0,69,741 0/0:104,0:104:78.18:0,78,852 0/0:120,0:120:75.20:0,75,849 0/1:71,27:98:99:276,0,361 0/0:126,0:126:96.24:0,96,1074 15 43939642 . C T 17146.04 . AC=10;AF=0.119;AN=84;BaseQRankSum=-24.698;DP=5139;DS;Dels=0.00;FS=0.307;HRun=0;HaplotypeScore=2.2120;InbreedingCoeff=0.0919;MQ=55.72;MQ0=1;MQRankSum=3.873;QD=14.12;ReadPosRankSum=2.368 GT:AD:DP:GQ:PL 0/0:99,1:100:99:0,262,3369 0/1:60,52:112:99:1333,0,1646 0/1:43,34:77:99:879,0,1191 0/0:216,0:216:99:0,527,7184 0/0:220,0:220:99:0,569,7756 1/1:0,167:167:99:5414,427,0 0/1:80,70:150:99:1846,0,2379 0/1:83,80:163:99:2096,0,2394 0/0:106,0:106:99:0,274,3543 0/0:71,0:71:99:0,187,2364 0/0:94,1:95:99:0,214,3067 0/0:99,0:99:99:0,265,3385 0/0:112,0:112:99:0,295,3726 0/0:94,0:94:99:0,238,3081 0/1:152,97:249:99:2364,0,4310 0/0:79,0:79:99:0,223,2798 0/1:66,53:119:99:1433,0,1878 0/0:90,0:90:99:0,244,3088 0/0:151,0:152:99:0,379,4887 0/0:158,0:158:99:0,400,5126 0/0:134,0:135:99:0,358,4514 0/0:90,0:90:99:0,238,2982 0/0:214,0:214:99:0,542,7464 0/0:155,0:155:99:0,367,5023 0/0:186,2:188:99:0,431,6396 0/0:130,0:130:99:0,328,4462 0/0:59,0:59:99:0,163,2056 0/1:50,41:91:99:1006,0,1413 0/0:94,0:94:99:0,241,3106 0/0:82,0:82:99:0,214,2704 0/0:80,0:80:99:0,223,2842 0/0:138,0:138:99:0,370,4681 0/0:115,0:115:99:0,295,3769 0/0:93,0:93:99:0,244,3101 0/0:76,0:76:99:0,202,2570 0/0:97,0:97:99:0,262,3328 0/0:149,0:149:99:0,370,4790 0/0:115,0:115:99:0,304,3820 0/0:96,0:96:99:0,259,3283 0/0:109,0:109:99:0,292,3705 0/1:55,31:86:99:774,0,1563 0/0:118,0:118:99:0,313,3900 15 44069069 . G C 2465.90 . AC=10;AF=0.119;AN=84;BaseQRankSum=3.957;DP=635;Dels=0.00;FS=1.994;HRun=0;HaplotypeScore=0.4140;InbreedingCoeff=0.0847;MQ=58.52;MQ0=0;MQRankSum=0.135;QD=17.37;ReadPosRankSum=-0.372 GT:AD:DP:GQ:PL 0/0:17,0:17:48.15:0,48,596 0/1:10,9:19:99:270,0,293 0/1:4,2:7:57.88:58,0,97 0/0:38,0:38:99:0,108,1420 0/0:33,0:33:87.26:0,87,1134 1/1:0,22:22:60.20:817,60,0 0/1:9,12:21:99:414,0,282 0/1:15,14:29:99:409,0,479 0/0:7,0:7:21.06:0,21,250 0/0:10,0:10:30.08:0,30,351 0/0:7,0:7:18.06:0,18,231 0/0:10,0:10:30.09:0,30,367 0/0:4,0:4:12.04:0,12,143 0/0:5,0:5:15.05:0,15,180 0/0:44,0:44:99:0,111,1394 0/0:15,0:15:39.11:0,39,484 0/0:9,0:9:24.07:0,24,298 0/1:5,4:9:99:125,0,145 0/1:9,4:13:84.11:84,0,250 0/0:15,0:15:36.10:0,36,443 0/0:14,0:14:39.12:0,39,476 0/0:14,0:14:39.12:0,39,485 0/0:29,0:29:81.26:0,81,1083 0/0:16,0:16:45.15:0,45,611 0/0:29,0:31:81.27:0,81,1094 0/0:23,0:23:63.21:0,63,849 0/0:15,0:15:39.12:0,39,491 0/1:4,5:9:97.80:162,0,98 0/0:6,0:6:18.05:0,18,217 0/0:11,0:11:33.10:0,33,399 0/0:8,0:8:18.05:0,18,222 0/0:20,0:21:57.18:0,57,704 0/0:13,0:13:39.12:0,39,473 0/0:15,0:15:39.12:0,39,492 0/0:5,0:5:15.05:0,15,188 0/0:9,0:9:27.08:0,27,329 0/0:7,0:7:18.06:0,18,222 0/0:10,0:10:27.09:0,27,343 0/0:7,0:7:21.07:0,21,267 0/0:12,0:12:33.09:0,33,394 0/1:4,9:13:99:268,0,112 0/0:13,0:13:39.11:0,39,468 15 44093927 . T C 12488.56 . AC=10;AF=0.119;AN=84;BaseQRankSum=18.320;DP=3067;Dels=0.00;FS=2.386;HRun=1;HaplotypeScore=1.2753;InbreedingCoeff=0.0919;MQ=59.47;MQ0=0;MQRankSum=0.311;QD=17.37;ReadPosRankSum=0.817 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,141,1735 0/1:43,25:68:99:591,0,1191 0/1:20,33:53:99:972,0,515 0/0:136,0:136:99:0,343,4233 0/0:89,0:90:99:0,238,2930 1/1:0,101:101:99:3582,268,0 0/1:64,50:114:99:1462,0,1799 0/1:57,63:120:99:1868,0,1582 0/0:49,0:49:99:0,141,1681 0/0:42,0:42:99:0,123,1456 0/0:65,0:65:99:0,181,2201 0/0:45,0:45:99:0,120,1427 0/0:44,0:44:99:0,117,1418 0/0:44,0:44:99:0,126,1530 0/0:201,0:201:99:0,505,6128 0/0:40,0:40:99:0,105,1298 0/0:46,0:46:99:0,120,1488 0/1:23,26:49:99:721,0,622 0/1:49,66:115:99:1772,0,1324 0/0:98,0:98:99:0,268,3266 0/0:132,0:132:99:0,334,4115 0/0:66,0:66:99:0,169,2054 0/0:139,0:139:99:0,361,4473 0/0:82,0:82:99:0,226,2805 0/0:86,0:86:99:0,238,2926 0/0:76,1:77:99:0,173,2518 0/0:51,0:51:99:0,141,1710 0/1:29,32:61:99:937,0,820 0/0:45,0:45:99:0,132,1562 0/0:45,0:45:99:0,126,1512 0/0:57,0:57:99:0,153,1883 0/0:90,0:90:99:0,238,2945 0/0:71,0:73:99:0,187,2256 0/0:45,0:45:99:0,120,1478 0/0:42,0:42:99:0,108,1325 0/0:46,0:46:99:0,111,1385 0/0:102,0:102:99:0,265,3225 0/0:53,0:53:99:0,135,1645 0/0:57,0:57:99:0,150,1864 0/0:55,0:55:99:0,153,1882 0/1:17,21:38:99:584,0,503 0/0:50,0:50:99:0,141,1696 15 44853329 . C T 116.04 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.157;DP=7657;DS;Dels=0.00;FS=34.885;HRun=1;HaplotypeScore=3.2773;InbreedingCoeff=-0.0120;MQ=58.11;MQ0=10;MQRankSum=-5.007;QD=0.46;ReadPosRankSum=1.276 GT:AD:DP:GQ:PL 0/0:164,0:164:99:0,457,5774 0/0:192,0:192:99:0,533,6685 0/0:145,0:146:99:0,406,5051 0/0:250,0:250:99:0,701,9219 0/0:247,0:247:99:0,692,9355 0/0:250,0:250:99:0,695,9349 0/1:219,31:250:99:162,0,7513 0/0:250,0:250:99:0,707,9450 0/0:148,0:148:99:0,415,5214 0/0:148,0:148:99:0,406,5071 0/0:140,0:140:99:0,388,4837 0/0:168,0:168:99:0,469,5798 0/0:143,0:143:99:0,373,4710 0/0:128,0:128:99:0,358,4489 0/0:250,0:250:99:0,689,8622 0/0:109,0:109:99:0,322,3926 0/0:170,0:170:99:0,478,6027 0/0:154,1:156:99:0,433,5372 0/0:197,0:199:99:0,533,6751 0/0:248,0:248:99:0,668,8396 0/0:208,0:208:99:0,584,7359 0/0:129,0:129:99:0,331,4251 0/0:250,0:250:99:0,707,9475 0/0:250,0:250:99:0,683,9102 0/0:250,0:250:99:0,701,9372 0/0:249,0:250:99:0,665,8884 0/0:112,0:112:99:0,325,3994 0/0:168,0:168:99:0,475,5875 0/0:144,0:144:99:0,406,5089 0/0:154,0:154:99:0,424,5318 0/0:132,0:133:99:0,367,4664 0/0:241,0:241:99:0,644,8151 0/0:135,0:135:99:0,364,4612 0/0:153,0:153:99:0,424,5323 0/0:154,0:154:99:0,436,5485 0/0:168,0:168:99:0,475,5927 0/0:163,0:164:99:0,454,5600 0/0:176,0:176:99:0,497,6218 0/0:167,0:167:99:0,460,5791 0/0:178,0:179:99:0,512,6394 0/0:134,0:134:99:0,376,4667 0/0:182,0:182:99:0,497,6256 15 44918690 . C T 2648.14 . 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A C 540.23 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.977;DP=1501;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4315;InbreedingCoeff=-0.0247;MQ=58.83;MQ0=0;MQRankSum=0.617;QD=9.82;ReadPosRankSum=-2.157 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,102,1240 0/0:38,0:38:99:0,105,1289 0/0:32,0:32:93.26:0,93,1104 0/0:38,0:38:99:0,102,1262 0/0:36,0:36:90.28:0,90,1151 0/0:33,0:33:84.27:0,84,1108 0/0:38,0:38:96.30:0,96,1227 0/0:36,0:36:96.30:0,96,1212 0/1:21,9:30:99:242,0,623 0/0:25,0:25:69.21:0,69,845 0/1:13,12:25:99:361,0,338 0/0:35,0:35:99:0,99,1212 0/0:26,0:26:72.22:0,72,877 0/0:32,0:32:93.26:0,93,1125 0/0:100,0:100:99:0,256,3127 0/0:19,1:20:16.37:0,16,594 0/0:36,0:36:96.28:0,96,1176 0/0:37,0:38:90.27:0,90,1123 0/0:41,0:41:99:0,108,1360 0/0:47,0:47:99:0,135,1628 0/0:53,0:53:99:0,138,1721 0/0:20,0:20:57.17:0,57,690 0/0:45,0:45:99:0,117,1477 0/0:24,0:24:69.22:0,69,863 0/0:31,0:31:84.27:0,84,1069 0/0:40,0:40:96.30:0,96,1236 0/0:37,0:37:99:0,102,1235 0/0:29,0:29:84.26:0,84,1021 0/0:34,0:34:90.28:0,90,1114 0/0:31,0:31:84.23:0,84,1016 0/0:27,0:27:75.23:0,75,927 0/0:42,0:42:99:0,117,1432 0/0:21,0:21:54.17:0,54,675 0/0:28,0:28:81.25:0,81,996 0/0:30,0:30:78.24:0,78,966 0/0:42,0:42:99:0,114,1387 0/0:54,0:54:99:0,141,1725 0/0:39,0:39:99:0,105,1265 0/0:33,0:33:90.28:0,90,1115 0/0:33,0:33:96.27:0,96,1155 0/0:34,0:34:87.27:0,87,1091 0/0:30,0:30:90.27:0,90,1087 15 44955830 . C T 62.43 . 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G A 2934.75 . AC=4;AF=0.048;AN=84;BaseQRankSum=5.690;DP=2882;Dels=0.00;FS=0.793;HRun=0;HaplotypeScore=1.9868;InbreedingCoeff=-0.0500;MQ=58.99;MQ0=2;MQRankSum=-2.070;QD=14.67;ReadPosRankSum=0.659 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,159,1741 0/0:57,0:57:99:0,150,1721 0/0:50,0:50:99:0,132,1487 0/0:145,0:145:99:0,391,4752 0/0:117,0:117:99:0,343,4188 0/0:81,0:81:99:0,220,2667 0/0:81,0:81:99:0,223,2692 0/0:71,0:71:99:0,196,2393 0/0:45,0:45:99:0,132,1531 0/0:49,0:49:99:0,141,1592 0/0:49,0:49:99:0,132,1474 0/0:59,0:59:99:0,162,1849 0/0:45,0:45:99:0,117,1353 0/0:44,0:45:99:0,123,1360 0/0:191,0:191:99:0,493,5772 0/0:60,0:60:99:0,168,1905 0/0:54,0:54:99:0,153,1685 0/0:45,0:46:99:0,120,1345 0/0:73,0:74:99:0,186,2085 0/0:88,0:88:99:0,229,2644 0/0:86,0:86:99:0,238,2742 0/0:60,0:60:99:0,162,1818 0/0:161,0:161:99:0,451,5484 0/0:71,0:71:99:0,202,2432 0/0:92,1:93:99:0,256,3104 0/0:63,0:63:99:0,166,2061 0/1:20,16:36:99:472,0,533 0/1:19,24:43:99:566,0,525 0/0:46,0:46:99:0,126,1418 0/0:47,0:47:99:0,126,1405 0/0:48,0:48:99:0,132,1515 0/0:101,0:101:99:0,259,3023 0/0:69,0:69:99:0,180,2036 0/1:23,29:52:99:845,0,532 0/0:52,0:53:99:0,147,1674 0/1:29,39:69:99:1139,0,730 0/0:91,0:91:99:0,238,2718 0/0:60,0:61:99:0,156,1794 0/0:37,0:37:99:0,105,1202 0/0:47,0:47:99:0,123,1368 0/0:37,0:37:99:0,102,1181 0/0:43,0:43:99:0,111,1289 15 45389524 . C T 2832.59 . AC=3;AF=0.036;AN=84;BaseQRankSum=0.365;DP=3982;DS;Dels=0.00;FS=1.132;HRun=0;HaplotypeScore=2.5037;InbreedingCoeff=-0.0370;MQ=58.81;MQ0=1;MQRankSum=1.492;QD=11.51;ReadPosRankSum=-0.634 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,150,1830 0/0:78,0:78:99:0,214,2462 0/0:75,1:77:99:0,182,2395 0/0:199,0:199:99:0,545,6826 0/0:171,0:171:99:0,481,6114 0/0:95,0:95:99:0,265,3365 0/0:119,0:119:99:0,319,4019 0/0:133,0:133:99:0,352,4484 0/0:67,0:68:99:0,196,2245 0/0:60,0:60:99:0,168,1988 0/0:62,0:62:99:0,159,1898 0/0:71,0:71:99:0,205,2365 0/0:57,0:57:99:0,168,1921 0/0:71,0:71:99:0,202,2368 0/0:238,0:238:99:0,593,7104 0/0:60,0:60:99:0,168,1963 0/0:69,0:69:99:0,189,2197 0/0:68,0:68:99:0,198,2206 0/0:132,0:133:99:0,355,4137 0/0:152,0:152:99:0,403,4809 0/0:118,2:120:99:0,269,3546 0/1:46,36:84:99:906,0,1214 0/0:174,0:175:99:0,472,5992 0/0:110,0:111:99:0,283,3642 0/0:132,0:132:99:0,352,4459 0/0:102,0:102:99:0,259,3284 0/0:62,0:63:99:0,171,1997 0/0:79,0:79:99:0,220,2539 0/0:44,0:44:99:0,123,1471 0/1:40,29:69:99:785,0,1098 0/0:70,0:70:99:0,193,2273 0/0:146,1:148:99:0,364,4387 0/1:46,47:93:99:1217,0,1198 0/0:59,0:59:99:0,168,1960 0/0:65,0:66:99:0,165,1942 0/0:73,0:73:99:0,187,2232 0/0:118,0:119:99:0,316,3660 0/0:74,0:74:99:0,190,2278 0/0:72,0:72:99:0,192,2214 0/0:79,0:79:99:0,220,2581 0/0:51,0:51:99:0,144,1653 0/0:61,0:61:99:0,165,1930 15 45393014 . G C 2695.79 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.135;DP=2877;DS;Dels=0.00;FS=1.823;HRun=4;HaplotypeScore=1.5311;InbreedingCoeff=-0.0244;MQ=59.45;MQ0=0;MQRankSum=1.132;QD=14.49;ReadPosRankSum=-2.662 GT:AD:DP:GQ:PL 0/0:36,0:36:96.26:0,96,1167 0/0:45,0:45:99:0,123,1492 0/0:53,0:53:99:0,132,1646 0/0:164,0:164:99:0,460,6017 0/0:182,0:183:99:0,472,6244 0/0:132,0:132:99:0,355,4655 0/0:142,0:142:99:0,370,4774 0/1:68,74:142:99:2083,0,1952 0/0:42,1:43:99:0,120,1446 0/0:33,0:33:93.26:0,93,1118 0/0:36,0:36:99:0,105,1296 0/0:30,0:30:87.25:0,87,1052 0/0:38,0:38:99:0,105,1285 0/0:44,0:44:99:0,123,1507 0/0:151,1:153:99:0,403,4949 0/0:42,0:42:99:0,120,1473 0/0:33,1:34:93.26:0,93,1120 0/0:51,0:51:99:0,135,1665 0/0:62,1:63:99:0,177,2108 0/0:73,0:73:99:0,196,2447 0/0:54,0:54:99:0,150,1811 0/0:50,0:50:99:0,141,1720 0/0:170,0:170:99:0,457,5981 0/0:114,0:114:99:0,304,3964 0/0:145,0:145:99:0,388,5099 0/0:119,0:119:99:0,331,4261 0/0:32,0:32:90.28:0,90,1115 0/0:32,0:32:81.23:0,81,1004 0/0:39,0:40:99:0,108,1335 0/0:35,0:35:99:0,99,1240 0/1:20,24:44:99:675,0,546 0/0:68,1:69:99:0,187,2351 0/0:43,0:44:99:0,123,1516 0/0:48,0:48:99:0,138,1733 0/0:40,0:40:99:0,105,1294 0/0:45,0:45:99:0,126,1565 0/0:52,0:52:99:0,132,1635 0/0:43,0:43:99:0,114,1389 0/0:53,0:53:99:0,132,1613 0/0:42,0:42:99:0,123,1487 0/0:39,0:39:99:0,108,1348 0/0:30,0:30:81.26:0,81,1021 15 45398369 . C T 829.65 . 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T C 4138.14 . 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G A 1394.70 . 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A C 9.95 . 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C G 51.13 . AC=3;AF=0.036;AN=84;BaseQRankSum=-15.878;DP=1950;Dels=0.00;FS=417.889;HRun=1;HaplotypeScore=1.3266;InbreedingCoeff=-0.0539;MQ=37.12;MQ0=263;MQRankSum=-1.807;QD=0.46;ReadPosRankSum=-10.033 GT:AD:DP:GQ:PL 0/0:25,10:35:10.90:0,11,386 0/0:31,2:34:19.58:0,20,522 0/0:29,10:39:11.16:0,11,475 0/0:83,18:101:99:0,154,2200 0/0:59,19:80:90.41:0,90,1355 0/0:27,9:36:37.29:0,37,611 0/0:29,11:40:31.41:0,31,594 0/0:38,7:46:48.95:0,49,935 0/0:25,9:34:54.11:0,54,601 0/0:19,9:28:33.09:0,33,392 0/0:20,5:25:13.46:0,13,432 0/0:18,6:24:16.45:0,16,451 0/0:26,8:34:34.01:0,34,609 0/0:34,11:45:77.62:0,78,863 0/0:111,42:154:77.73:0,78,2224 0/0:20,9:29:2.74:1,0,492 0/0:32,13:45:35.57:0,36,691 0/1:26,13:39:55.01:55,0,515 0/0:49,14:63:61.57:0,62,1263 0/0:54,8:62:96.22:0,96,1144 0/0:44,17:61:59.71:0,60,919 0/0:36,7:43:50.43:0,50,748 0/0:84,22:106:99:0,147,2237 0/0:44,7:51:63.54:0,64,1022 0/0:43,13:56:69.42:0,69,1095 0/0:32,4:36:54.13:0,54,639 0/0:19,4:23:36.09:0,36,416 0/1:20,8:29:15.09:15,0,391 0/0:24,4:28:45.08:0,45,508 0/0:21,12:33:16.67:0,17,424 0/0:20,6:26:45.10:0,45,524 0/0:48,3:51:96.24:0,96,1157 0/0:39,9:48:47.86:0,48,1028 0/1:32,12:44:53.72:54,0,582 0/0:38,6:44:54.83:0,55,1061 0/0:31,9:40:68.07:0,68,780 0/0:43,15:59:79.44:0,79,900 0/0:24,8:32:55.93:0,56,602 0/0:26,7:33:0.06:0,0,611 0/0:31,10:41:69.16:0,69,782 0/0:26,7:33:12.48:0,12,429 0/0:34,6:40:58.56:0,59,956 15 45440600 . C T 440.93 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.591;DP=2830;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.1430;InbreedingCoeff=-0.0120;MQ=59.30;MQ0=0;MQRankSum=-0.059;QD=8.82;ReadPosRankSum=0.870 GT:AD:DP:GQ:PL 0/0:80,0:80:99:0,211,2444 0/0:58,0:58:99:0,150,1784 0/0:63,0:63:99:0,174,2025 0/0:95,0:95:99:0,256,3206 0/0:83,0:83:99:0,223,2820 0/0:65,0:65:99:0,174,2098 0/0:70,0:70:99:0,184,2328 0/0:71,0:71:99:0,181,2301 0/0:79,0:79:99:0,202,2334 0/0:34,0:34:90.23:0,90,1013 0/0:47,0:47:99:0,129,1458 0/0:60,0:60:99:0,159,1831 0/0:50,0:50:99:0,141,1593 0/0:74,0:74:99:0,202,2343 0/0:201,0:201:99:0,499,5903 0/0:58,0:58:99:0,162,1873 0/0:65,0:65:99:0,180,2038 0/0:52,0:52:99:0,132,1589 0/0:75,0:75:99:0,207,2335 0/0:93,0:93:99:0,247,2942 0/0:87,0:87:99:0,217,2601 0/0:61,0:61:99:0,159,1828 0/0:77,0:77:99:0,199,2481 0/0:68,0:68:99:0,187,2338 0/0:70,0:70:99:0,178,2246 0/0:54,0:54:99:0,144,1812 0/0:43,0:43:99:0,117,1349 0/0:65,0:65:99:0,174,2032 0/0:49,0:49:99:0,138,1603 0/0:67,0:67:99:0,165,1898 0/0:53,0:53:99:0,144,1631 0/0:69,0:69:99:0,180,2113 0/0:54,0:54:99:0,141,1632 0/0:65,0:65:99:0,183,2052 0/0:49,0:49:99:0,135,1525 0/0:65,0:65:99:0,165,1925 0/0:67,0:67:99:0,183,2093 0/0:74,0:74:99:0,196,2261 0/0:61,0:61:99:0,171,1992 0/0:64,0:64:99:0,177,2071 0/0:45,0:45:99:0,126,1453 0/1:31,19:50:99:487,0,828 15 45446156 . C T 73360.07 . AC=64;AF=0.762;AN=84;BaseQRankSum=-24.594;DP=3154;Dels=0.00;FS=9.186;HRun=1;HaplotypeScore=1.1121;InbreedingCoeff=0.3437;MQ=56.84;MQ0=0;MQRankSum=3.051;QD=26.04;ReadPosRankSum=-1.645 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2304,193,0 1/1:0,63:63:99:2023,165,0 1/1:0,50:50:99:1621,135,0 0/1:76,79:155:99:2026,0,2352 1/1:0,116:116:99:3930,316,0 0/1:74,63:137:99:1671,0,2111 1/1:0,106:106:99:3432,277,0 0/0:103,1:104:99:0,229,3569 1/1:0,47:47:99:1586,135,0 0/1:33,26:59:99:669,0,945 1/1:1,62:63:99:1956,130,0 1/1:0,63:63:99:2106,174,0 1/1:0,51:51:99:1618,132,0 1/1:0,57:57:99:1842,147,0 1/1:0,202:202:99:6218,509,0 1/1:0,55:55:99:1847,153,0 1/1:2,56:58:93.66:1657,94,0 1/1:0,64:64:99:2079,172,0 1/1:0,78:78:99:2619,217,0 1/1:0,91:91:99:2721,214,0 0/1:50,36:87:99:954,0,1349 0/0:59,0:59:99:0,159,2012 0/1:69,55:126:99:1434,0,2112 1/1:0,85:85:99:2629,208,0 1/1:0,95:96:99:3095,253,0 1/1:2,98:100:99:3082,211,0 0/1:28,14:42:99:384,0,870 1/1:0,50:50:99:1648,138,0 0/1:25,33:58:99:817,0,717 0/0:61,0:61:99:0,162,2037 0/0:54,0:54:99:0,150,1874 1/1:0,69:69:99:2307,187,0 0/0:59,0:59:99:0,153,1982 0/1:26,39:65:99:1087,0,719 1/1:0,51:51:99:1669,138,0 0/1:35,30:65:99:761,0,1086 1/1:0,54:54:99:1695,138,0 0/1:33,31:64:99:834,0,933 1/1:1,58:59:99:1894,156,0 1/1:0,58:58:99:1869,159,0 1/1:0,48:48:99:1527,126,0 1/1:1,53:54:99:1746,112,0 15 45545478 . C T 28806.34 . 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G A 25.44 . 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G A 24214.74 . AC=11;AF=0.131;AN=84;BaseQRankSum=-17.720;DP=5179;DS;Dels=0.00;FS=15.924;HRun=0;HaplotypeScore=2.1646;InbreedingCoeff=0.0585;MQ=59.50;MQ0=0;MQRankSum=0.918;QD=17.95;ReadPosRankSum=0.956 GT:AD:DP:GQ:PL 0/0:94,0:94:99:0,271,3261 0/1:48,53:101:99:1534,0,1351 0/1:42,46:88:99:1318,0,1278 0/0:250,0:250:99:0,725,9321 0/0:203,0:203:99:0,593,7727 0/1:99,92:192:99:2760,0,3117 1/1:0,191:191:99:6739,557,0 0/0:168,0:168:99:0,481,6212 0/0:93,0:93:99:0,262,3225 0/0:91,0:91:99:0,259,3161 0/0:71,0:72:99:0,208,2463 0/0:103,0:103:99:0,292,3542 0/0:62,0:62:99:0,178,2204 0/0:89,1:90:99:0,236,3111 0/1:117,133:250:99:3693,0,3384 0/0:67,0:67:99:0,184,2226 0/1:41,57:98:99:1670,0,1177 0/0:94,0:94:99:0,262,3147 0/0:130,2:133:99:0,314,4454 0/0:159,1:160:99:0,400,5337 0/0:168,0:169:99:0,475,5858 0/0:113,0:113:99:0,331,4030 0/0:242,0:242:99:0,701,9130 0/0:145,0:145:99:0,412,5336 0/0:168,0:169:99:0,482,6253 0/1:75,94:171:99:2746,0,2356 0/1:31,27:59:99:805,0,915 0/0:92,0:92:99:0,265,3209 0/1:51,49:100:99:1404,0,1548 0/0:86,1:87:99:0,211,2884 0/0:74,0:74:99:0,205,2501 0/0:153,0:153:99:0,421,5165 0/0:99,0:99:99:0,274,3299 0/0:91,0:91:99:0,262,3210 0/1:45,54:99:99:1545,0,1268 0/0:104,0:104:99:0,307,3759 0/0:147,0:147:99:0,409,4953 0/0:102,0:103:99:0,295,3549 0/0:97,0:97:99:0,277,3366 0/0:93,0:93:99:0,268,3248 0/0:83,1:84:99:0,212,2807 0/0:88,0:88:99:0,250,3023 15 48052595 . A C 1380.35 . AC=2;AF=0.024;AN=84;BaseQRankSum=8.844;DP=2128;Dels=0.00;FS=2.530;HRun=1;HaplotypeScore=0.7769;InbreedingCoeff=-0.0244;MQ=59.31;MQ0=1;MQRankSum=-0.131;QD=11.04;ReadPosRankSum=0.108 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,138,1587 0/0:41,0:41:99:0,117,1377 0/0:32,0:32:90.26:0,90,1048 0/0:78,0:78:99:0,214,2534 0/0:77,0:77:99:0,220,2562 0/1:39,21:61:99:684,0,1100 0/0:57,0:57:99:0,159,1911 0/1:38,26:64:99:759,0,1086 0/0:31,0:31:87.25:0,87,1011 0/0:35,0:35:99:0,99,1164 0/0:53,0:53:99:0,147,1727 0/0:44,0:44:99:0,123,1414 0/0:34,0:34:96.26:0,96,1113 0/0:33,0:33:96.28:0,96,1118 0/0:146,0:146:99:0,388,4586 0/0:31,0:32:90.27:0,90,1066 0/0:48,0:48:99:0,126,1525 0/0:46,0:46:99:0,135,1572 0/0:51,0:51:99:0,150,1768 0/0:78,1:79:99:0,211,2499 0/0:68,1:69:99:0,193,2292 0/0:42,0:42:99:0,120,1427 0/0:95,0:95:99:0,265,3142 0/0:46,0:46:99:0,132,1566 0/0:60,0:60:99:0,162,1940 0/0:59,0:59:99:0,156,1887 0/0:21,0:21:60.18:0,60,703 0/0:42,0:42:99:0,120,1421 0/0:30,0:30:87.26:0,87,1025 0/0:33,0:33:93.27:0,93,1095 0/0:44,0:44:99:0,126,1500 0/0:67,1:68:99:0,181,2180 0/0:53,0:53:99:0,129,1598 0/0:33,0:33:93.28:0,93,1113 0/0:27,0:28:78.20:0,78,891 0/0:45,0:45:99:0,129,1507 0/0:56,0:56:99:0,153,1816 0/0:51,0:51:99:0,123,1504 0/0:33,0:33:93.27:0,93,1107 0/0:49,0:49:99:0,138,1606 0/0:37,0:37:99:0,108,1233 0/0:44,1:45:99:0,117,1423 15 48056219 . A G 3098.11 . AC=2;AF=0.024;AN=84;BaseQRankSum=11.345;DP=3058;Dels=0.00;FS=3.876;HRun=0;HaplotypeScore=1.3755;InbreedingCoeff=-0.0244;MQ=59.36;MQ0=0;MQRankSum=1.093;QD=15.73;ReadPosRankSum=-0.020 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,159,1928 0/0:64,0:64:99:0,178,2155 0/0:66,0:66:99:0,187,2277 0/0:123,0:123:99:0,331,4113 0/0:99,0:99:99:0,283,3528 0/1:53,65:118:99:2020,0,1576 0/0:78,0:78:99:0,205,2594 0/1:40,39:79:99:1140,0,1197 0/0:44,0:44:99:0,123,1492 0/0:47,0:47:99:0,129,1559 0/0:40,0:40:99:0,111,1355 0/0:64,0:64:99:0,184,2238 0/0:54,0:54:99:0,153,1852 0/0:53,0:53:99:0,147,1784 0/0:184,0:184:99:0,481,5914 0/0:50,0:50:99:0,141,1717 0/0:59,0:59:99:0,169,2052 0/0:51,0:51:99:0,147,1765 0/0:114,0:115:99:0,313,3818 0/0:88,0:88:99:0,247,3036 0/0:98,0:98:99:0,256,3119 0/0:62,0:62:99:0,171,2059 0/0:129,0:129:99:0,346,4322 0/0:83,0:83:99:0,223,2818 0/0:89,0:89:99:0,238,3002 0/0:83,0:83:99:0,229,2889 0/0:55,0:55:99:0,147,1801 0/0:39,0:39:99:0,117,1387 0/0:54,0:54:99:0,156,1918 0/0:64,0:64:99:0,178,2172 0/0:70,0:70:99:0,202,2459 0/0:86,1:87:99:0,235,2889 0/0:56,0:56:99:0,147,1824 0/0:50,0:50:99:0,135,1664 0/0:47,0:47:99:0,132,1600 0/0:54,0:54:99:0,150,1854 0/0:98,0:98:99:0,277,3340 0/0:62,0:62:99:0,175,2102 0/0:66,0:66:99:0,196,2355 0/0:63,0:63:99:0,184,2228 0/0:52,0:52:99:0,153,1835 0/0:67,0:67:99:0,187,2270 15 48058071 . G A 26003.51 . AC=23;AF=0.274;AN=84;BaseQRankSum=-15.879;DP=3295;Dels=0.00;FS=3.507;HRun=1;HaplotypeScore=1.6246;InbreedingCoeff=-0.0178;MQ=59.46;MQ0=0;MQRankSum=-0.068;QD=15.85;ReadPosRankSum=-1.969 GT:AD:DP:GQ:PL 0/0:71,0:71:99:0,199,2470 0/0:64,0:64:99:0,181,2239 0/1:20,22:42:99:615,0,630 0/1:76,78:154:99:2152,0,2135 0/0:139,0:139:99:0,385,5118 0/0:124,0:124:99:0,346,4668 0/1:53,46:99:99:1371,0,1652 0/1:61,43:104:99:1197,0,1899 0/0:61,0:61:99:0,169,2123 0/0:66,0:66:99:0,187,2322 0/0:68,1:69:99:0,162,2394 0/0:66,0:66:99:0,196,2426 0/0:58,0:58:99:0,153,1925 0/0:76,0:76:99:0,223,2752 0/1:102,97:199:99:2693,0,2878 0/1:23,22:45:99:578,0,682 0/1:34,28:62:99:753,0,1094 0/1:27,30:57:99:814,0,774 0/0:71,0:71:99:0,208,2587 0/0:74,0:74:99:0,193,2470 1/1:0,65:65:99:2254,181,0 1/1:3,52:55:50.28:1724,50,0 0/1:85,66:151:99:1794,0,2536 0/0:112,1:113:99:0,259,3877 0/1:52,53:105:99:1472,0,1654 0/0:109,0:109:99:0,307,4042 0/0:51,1:52:98.97:0,99,1599 0/1:41,39:80:99:1081,0,1217 0/1:22,22:45:99:659,0,676 0/0:69,0:69:99:0,187,2292 0/0:47,0:47:99:0,138,1724 1/1:0,91:91:99:3039,247,0 0/0:51,0:51:99:0,141,1750 0/1:29,28:57:99:837,0,860 0/1:26,27:53:99:775,0,799 0/1:31,20:51:99:583,0,950 0/1:31,31:62:99:905,0,950 0/0:73,0:73:99:0,187,2386 0/1:40,24:64:99:709,0,1218 0/0:78,0:78:99:0,220,2724 0/0:53,1:54:99:0,124,1889 0/0:69,0:69:99:0,202,2526 15 48426484 . A G 4091.86 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.391;DP=5604;DS;Dels=0.00;FS=0.965;HRun=0;HaplotypeScore=2.3425;InbreedingCoeff=-0.0244;MQ=59.49;MQ0=1;MQRankSum=0.117;QD=11.12;ReadPosRankSum=0.507 GT:AD:DP:GQ:PL 0/0:103,0:104:99:0,268,3289 0/0:120,0:120:99:0,310,3824 0/0:91,1:93:99:0,244,2976 0/0:244,0:245:99:0,623,7804 0/0:244,0:244:99:0,599,7635 0/1:125,62:187:99:1694,0,3622 0/0:209,0:209:99:0,521,6710 0/1:95,86:181:99:2398,0,2581 0/0:87,0:87:99:0,220,2725 0/0:106,0:106:99:0,274,3350 0/0:82,0:82:99:0,226,2685 0/0:98,0:98:99:0,268,3264 0/0:89,0:89:99:0,238,2886 0/0:94,0:94:99:0,247,3057 0/0:249,0:250:99:0,647,7788 0/0:99,0:99:99:0,262,3181 0/0:107,0:107:99:0,289,3505 0/0:92,0:92:99:0,250,3054 0/0:150,0:150:99:0,388,4715 0/0:168,0:169:99:0,415,5196 0/0:180,0:180:99:0,433,5405 0/0:96,0:97:99:0,247,3076 0/0:242,0:242:99:0,620,7831 0/0:222,0:222:99:0,557,7085 0/0:207,0:207:99:0,515,6536 0/0:183,0:184:99:0,484,6034 0/0:76,0:76:99:0,211,2529 0/0:110,0:111:99:0,295,3599 0/0:87,0:87:99:0,229,2851 0/0:85,0:85:99:0,232,2793 0/0:79,0:79:99:0,220,2709 0/0:162,0:162:99:0,397,4984 0/0:96,0:96:99:0,244,2978 0/0:100,0:100:99:0,262,3206 0/0:91,0:91:99:0,235,2881 0/0:123,0:123:99:0,319,3915 0/0:148,0:149:99:0,388,4724 0/0:87,0:88:99:0,229,2803 0/0:91,0:91:99:0,250,3032 0/0:120,0:120:99:0,328,4017 0/0:109,0:109:99:0,289,3508 0/0:99,0:99:99:0,271,3293 15 48720652 . C T 469.73 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.202;DP=2722;Dels=0.00;FS=3.252;HRun=1;HaplotypeScore=1.4883;InbreedingCoeff=-0.0120;MQ=59.20;MQ0=0;MQRankSum=1.379;QD=12.70;ReadPosRankSum=1.198 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,153,1965 0/0:66,0:66:99:0,184,2348 0/0:51,0:51:99:0,138,1771 0/0:108,0:108:99:0,274,3725 0/0:86,0:86:99:0,235,3181 0/0:85,0:85:99:0,211,2883 0/0:56,0:56:99:0,153,2070 0/0:85,0:85:99:0,226,3045 0/0:62,0:62:99:0,169,2147 0/0:59,0:59:99:0,166,2128 0/0:31,0:31:90.29:0,90,1141 0/0:56,0:56:99:0,166,2088 0/0:53,0:53:99:0,144,1845 0/0:59,0:59:99:0,162,2044 0/0:177,0:177:99:0,457,5938 0/1:20,17:37:99:516,0,641 0/0:56,0:56:99:0,153,1985 0/0:41,0:41:99:0,105,1353 0/0:74,0:74:99:0,190,2407 0/0:88,0:88:99:0,244,3111 0/0:77,0:77:99:0,202,2565 0/0:44,0:45:99:0,123,1562 0/0:127,0:127:99:0,331,4495 0/0:76,0:76:99:0,220,2960 0/0:78,0:78:99:0,211,2836 0/0:69,0:69:99:0,193,2623 0/0:42,0:42:99:0,120,1504 0/0:57,0:57:99:0,156,1966 0/0:60,0:60:99:0,162,2053 0/0:60,0:60:99:0,169,2122 0/0:53,0:53:99:0,150,1917 0/0:88,0:88:99:0,229,2955 0/0:45,0:45:99:0,126,1614 0/0:46,0:46:99:0,126,1601 0/0:36,0:36:99:0,105,1332 0/0:49,0:49:99:0,135,1737 0/0:60,0:60:99:0,162,2004 0/0:62,0:62:99:0,169,2138 0/0:59,0:59:99:0,169,2138 0/0:51,0:51:99:0,144,1814 0/0:48,0:48:99:0,126,1606 0/0:51,0:51:99:0,144,1877 15 48800870 . G A 448.22 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.185;DP=2640;Dels=0.00;FS=0.923;HRun=0;HaplotypeScore=1.0962;InbreedingCoeff=-0.0120;MQ=59.39;MQ0=0;MQRankSum=0.429;QD=12.45;ReadPosRankSum=-0.247 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,166,2101 0/0:59,0:59:99:0,172,2127 0/0:53,0:53:99:0,156,1975 0/0:81,0:81:99:0,223,3002 0/0:82,0:82:99:0,241,3269 0/0:99,0:99:99:0,262,3532 0/0:70,0:70:99:0,196,2657 0/0:83,0:83:99:0,220,2993 0/0:52,0:52:99:0,150,1902 0/0:54,0:54:99:0,156,1994 0/0:44,0:44:99:0,117,1504 0/0:57,0:57:99:0,159,2014 0/0:51,0:51:99:0,138,1780 0/0:45,0:45:99:0,114,1465 0/0:183,0:183:99:0,475,6129 0/1:19,17:36:99:494,0,590 0/0:59,0:59:99:0,163,2062 0/0:57,0:57:99:0,163,2049 0/0:76,0:76:99:0,211,2640 0/0:76,0:76:99:0,211,2693 0/0:69,0:69:99:0,196,2453 0/0:51,0:51:99:0,132,1709 0/0:107,0:107:99:0,304,4130 0/0:66,0:66:99:0,178,2416 0/0:74,0:74:99:0,208,2800 0/0:70,0:70:99:0,193,2601 0/0:33,0:33:99:0,99,1265 0/0:44,0:44:99:0,126,1588 0/0:48,0:49:99:0,135,1720 0/0:64,0:64:99:0,172,2146 0/0:45,0:46:99:0,129,1670 0/0:66,0:66:99:0,175,2261 0/0:50,0:50:99:0,144,1835 0/0:60,0:60:99:0,175,2140 0/0:49,0:49:99:0,144,1792 0/0:53,0:53:99:0,147,1904 0/0:53,0:53:99:0,144,1775 0/0:52,0:52:99:0,144,1833 0/0:51,0:51:99:0,141,1828 0/0:60,0:60:99:0,175,2188 0/0:47,0:47:99:0,126,1625 0/0:51,0:51:99:0,132,1686 15 48807637 . C T 125489.11 . 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T C 1579.30 . 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C A 14679.06 . 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G T 53.66 . 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TA T 4620.63 . 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G T 84631.09 . 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G C 630.27 . 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C G 237.81 . 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CAGG C 1152.22 . 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C T 1777.56 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.106;DP=2901;DS;Dels=0.00;FS=8.329;HRun=1;HaplotypeScore=3.4982;InbreedingCoeff=-0.0244;MQ=58.75;MQ0=1;MQRankSum=4.417;QD=14.57;ReadPosRankSum=-0.475 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,153,1892 0/0:69,0:69:99:0,175,2187 0/0:51,0:51:99:0,147,1815 0/0:83,0:83:99:0,220,2897 0/0:63,0:63:99:0,169,2209 0/1:26,36:62:99:1109,0,739 0/0:47,0:47:99:0,120,1579 0/1:34,26:60:99:731,0,1036 0/0:70,0:70:99:0,187,2293 0/0:74,0:74:99:0,190,2295 0/0:58,0:58:99:0,156,1944 0/0:62,0:62:99:0,160,2015 0/0:51,0:51:99:0,141,1775 0/0:58,0:58:99:0,156,1911 0/0:202,0:202:99:0,503,6332 0/0:59,0:60:99:0,162,1993 0/0:80,0:80:99:0,211,2599 0/0:55,0:55:99:0,144,1805 0/0:91,0:91:99:0,220,2735 0/0:105,0:105:99:0,277,3481 0/0:109,0:110:99:0,277,3470 0/0:50,0:50:99:0,138,1702 0/0:82,0:82:99:0,226,2939 0/0:55,0:55:99:0,147,1948 0/0:52,0:52:99:0,141,1800 0/0:80,0:80:99:0,229,3033 0/0:38,0:38:93.26:0,93,1146 0/0:57,0:57:99:0,150,1896 0/0:48,0:49:99:0,129,1593 0/0:64,0:64:99:0,166,2078 0/0:55,0:55:99:0,141,1762 0/0:100,0:100:99:0,256,3216 0/0:48,0:48:99:0,120,1508 0/0:53,0:53:99:0,135,1717 0/0:62,0:63:99:0,168,2063 0/0:60,0:60:99:0,166,2086 0/0:101,0:104:99:0,253,3127 0/0:64,0:64:99:0,178,2199 0/0:66,0:66:99:0,178,2251 0/0:65,0:65:99:0,178,2211 0/0:61,0:61:99:0,175,2130 0/0:66,0:66:99:0,181,2251 15 50776525 . T C 7937.92 . AC=6;AF=0.071;AN=84;BaseQRankSum=24.115;DP=4194;DS;Dels=0.00;FS=1.495;HRun=0;HaplotypeScore=0.9471;InbreedingCoeff=-0.0769;MQ=59.41;MQ0=0;MQRankSum=-0.757;QD=14.12;ReadPosRankSum=0.702 GT:AD:DP:GQ:PL 0/0:78,0:78:99:0,205,2520 0/0:90,0:90:99:0,217,2715 0/0:77,0:78:99:0,202,2431 0/0:150,0:150:99:0,379,4718 0/0:143,0:143:99:0,346,4410 0/1:79,77:156:99:2306,0,2069 0/0:144,1:145:99:0,361,4602 0/1:62,61:123:99:1729,0,1723 0/0:83,0:83:99:0,217,2663 0/0:68,0:68:99:0,184,2194 0/0:92,0:93:99:0,241,2951 0/0:85,0:85:99:0,238,2854 0/0:76,0:76:99:0,196,2395 0/0:73,0:73:99:0,199,2428 0/0:236,0:236:99:0,578,7186 0/0:42,0:42:99:0,117,1398 0/0:87,0:87:99:0,214,2677 0/0:90,0:90:99:0,235,2870 0/0:100,0:100:99:0,250,3122 0/0:93,0:93:99:0,235,2949 0/0:129,0:129:99:0,304,3875 0/0:78,0:78:99:0,190,2336 0/0:183,0:183:99:0,457,5753 0/0:151,0:151:99:0,361,4610 0/0:146,0:146:99:0,370,4635 0/0:126,0:126:99:0,322,4003 0/1:38,16:54:99:380,0,1039 0/0:93,0:93:99:0,244,2988 0/1:33,46:79:99:1233,0,857 0/0:60,0:60:99:0,168,2005 0/0:75,0:75:99:0,211,2572 0/0:133,0:133:99:0,322,4073 0/0:68,0:68:99:0,175,2178 0/0:83,0:83:99:0,214,2642 0/0:70,0:70:99:0,184,2283 0/0:89,0:89:99:0,214,2683 0/0:119,0:119:99:0,277,3513 0/0:79,0:80:99:0,202,2475 0/0:72,0:72:99:0,172,2164 0/1:41,41:83:99:1159,0,1132 0/1:27,40:67:99:1130,0,741 0/0:67,0:67:99:0,178,2199 15 50784950 . C T 4918.76 . AC=31;AF=0.369;AN=84;BaseQRankSum=-2.564;DP=4109;DS;Dels=0.00;FS=2.984;HRun=2;HaplotypeScore=2.8894;InbreedingCoeff=-0.5782;MQ=56.00;MQ0=26;MQRankSum=-32.132;QD=1.70;ReadPosRankSum=5.515 GT:AD:DP:GQ:PL 0/1:59,11:70:99:134,0,1726 0/1:53,11:64:99:131,0,1556 0/1:49,10:59:99:100,0,1457 0/0:168,13:181:99:0,125,5364 0/0:170,22:192:34.64:0,35,5553 0/0:159,15:174:27.58:0,28,5039 0/0:137,16:153:14.95:0,15,4431 0/0:137,7:144:99:0,160,4543 0/0:82,3:85:99:0,136,2597 0/1:60,15:75:99:214,0,1813 0/1:45,6:51:2.96:3,0,1287 0/1:51,13:64:99:228,0,1501 0/1:57,13:70:99:101,0,1700 0/1:53,8:61:66.41:66,0,1608 0/1:210,33:243:99:280,0,6090 0/0:37,4:41:3.64:0,4,1129 0/0:52,3:55:82.06:0,82,1727 0/1:60,9:69:57.39:57,0,1790 0/1:103,15:118:59.21:59,0,2914 0/1:94,17:111:99:215,0,2672 0/1:94,18:112:99:240,0,2792 0/1:38,15:53:99:244,0,1147 0/1:174,25:199:99:106,0,5532 0/1:129,26:155:99:228,0,4082 0/1:141,22:163:73.78:74,0,4507 0/1:128,25:153:99:151,0,3920 0/1:37,12:49:99:160,0,1163 0/1:65,13:78:99:156,0,1913 0/1:45,16:61:99:247,0,1363 0/1:53,11:64:84.35:84,0,1597 0/0:62,3:65:81.10:0,81,2001 0/1:95,24:119:99:347,0,2778 0/0:57,2:59:83.79:0,84,1678 0/1:64,10:74:25.58:26,0,1921 0/1:56,16:72:99:295,0,1643 0/1:58,19:77:99:310,0,1644 0/1:103,12:115:30.61:31,0,2902 0/0:60,4:64:69.24:0,69,1802 0/1:78,17:95:99:256,0,2273 0/1:59,8:67:49.15:49,0,1773 0/1:48,6:54:5.50:5,0,1554 0/1:60,20:80:99:323,0,1794 15 50784955 . C A 6669.78 . AC=33;AF=0.393;AN=84;BaseQRankSum=-15.048;DP=4235;DS;Dels=0.00;FS=2.300;HRun=2;HaplotypeScore=3.2895;InbreedingCoeff=-0.6603;MQ=55.81;MQ0=31;MQRankSum=-33.067;QD=1.92;ReadPosRankSum=5.393 GT:AD:DP:GQ:PL 0/1:61,14:75:99:223,0,1847 0/1:51,14:65:99:175,0,1594 0/1:48,12:60:99:136,0,1432 0/0:171,16:187:46.94:0,47,5516 0/1:175,24:199:55.46:55,0,5891 0/1:158,17:175:59.74:60,0,5156 0/1:146,19:165:18.36:18,0,4907 0/0:144,9:153:99:0,107,4689 0/0:81,4:85:99:0,101,2766 0/1:62,19:81:99:325,0,1989 0/0:48,5:53:6.09:0,6,1481 0/1:57,16:73:99:290,0,1744 0/1:56,14:70:99:122,0,1667 0/1:56,10:66:99:122,0,1741 0/1:212,37:249:99:380,0,6201 0/0:38,4:42:9.66:0,10,1227 0/0:53,3:56:82.09:0,82,1791 0/1:62,9:71:27.60:28,0,1967 0/1:103,24:128:99:308,0,2989 0/1:95,19:114:99:255,0,2839 0/1:90,21:111:99:303,0,2616 0/1:41,15:56:99:235,0,1339 0/1:177,27:204:99:181,0,5830 0/1:131,26:157:99:250,0,4257 0/1:139,24:163:99:112,0,4631 0/1:131,27:158:99:199,0,4195 0/1:45,13:58:99:174,0,1390 0/1:68,14:82:99:173,0,1973 0/1:43,15:58:99:260,0,1341 0/1:55,12:67:99:120,0,1691 0/0:59,5:64:8.27:0,8,1952 0/1:93,27:120:99:407,0,2844 0/0:57,3:60:41.45:0,41,1664 0/1:62,15:77:99:133,0,1976 0/1:56,18:74:99:315,0,1759 0/1:54,24:78:99:445,0,1642 0/1:96,13:110:30.76:31,0,2940 0/0:60,5:65:45.65:0,46,1901 0/1:75,20:95:99:305,0,2211 0/1:62,10:72:93.79:94,0,1940 0/1:44,9:53:77.37:77,0,1437 0/1:64,22:86:99:357,0,1953 15 50785016 . A G 55.15 . AC=2;AF=0.024;AN=84;BaseQRankSum=14.574;DP=4727;DS;Dels=0.00;FS=25.900;HRun=0;HaplotypeScore=1.2545;InbreedingCoeff=-0.0255;MQ=52.63;MQ0=128;MQRankSum=-9.376;QD=0.43;ReadPosRankSum=-2.379 GT:AD:DP:GQ:PL 0/0:73,0:73:99:0,181,2091 0/0:60,5:65:57.37:0,57,1776 0/0:62,8:70:17.03:0,17,1732 0/0:219,10:229:99:0,373,6824 0/0:216,23:239:18.78:0,19,6311 0/0:195,12:209:99:0,115,5862 0/0:210,0:210:99:0,560,6739 0/0:156,12:169:99:0,227,4893 0/0:89,0:89:99:0,235,2713 0/0:85,0:85:99:0,229,2639 0/0:63,0:63:99:0,165,1934 0/0:80,0:81:99:0,205,2419 0/0:87,0:88:99:0,229,2699 0/0:82,0:82:99:0,223,2655 0/0:249,0:249:99:0,647,7566 0/0:54,0:54:99:0,150,1760 0/0:85,0:85:99:0,223,2624 0/0:68,0:68:99:0,187,2181 0/0:122,1:126:99:0,325,3842 0/0:105,0:105:99:0,271,3267 0/0:113,11:126:21.91:0,22,3068 0/1:45,12:57:86.25:86,0,1339 0/0:222,15:239:99:0,248,6788 0/0:186,0:186:99:0,481,5788 0/0:193,0:194:99:0,505,6071 0/0:180,0:180:99:0,457,5518 0/0:78,0:78:99:0,196,2295 0/0:74,0:74:99:0,196,2294 0/0:61,0:61:99:0,159,1820 0/1:63,9:72:31.13:31,0,1876 0/0:58,5:63:25.40:0,25,1815 0/0:105,0:106:99:0,265,3104 0/0:57,3:60:99:0,115,1759 0/0:87,1:88:99:0,235,2751 0/0:99,0:99:99:0,247,2879 0/0:103,0:103:99:0,268,3108 0/0:80,0:81:99:0,220,2564 0/0:64,0:64:99:0,171,2012 0/0:78,11:89:12.66:0,13,2368 0/0:87,0:87:99:0,244,2862 0/0:74,0:74:99:0,177,2061 0/0:106,0:106:99:0,280,3334 15 50785054 . C T 204.18 . AC=4;AF=0.048;AN=84;BaseQRankSum=5.499;DP=4879;DS;Dels=0.00;FS=621.566;HRun=0;HaplotypeScore=2.0120;InbreedingCoeff=-0.0581;MQ=55.72;MQ0=111;MQRankSum=-23.721;QD=0.40;ReadPosRankSum=4.802 GT:AD:DP:GQ:PL 0/0:70,11:81:82.47:0,82,2133 0/0:71,8:79:99:0,120,2090 0/0:81,5:86:99:0,165,2519 0/0:240,10:250:99:0,330,7443 0/0:224,16:240:99:0,252,7010 0/0:219,12:231:99:0,269,7023 0/0:191,17:208:99:0,163,5886 0/0:165,12:177:99:0,209,5315 0/0:91,5:96:99:0,123,2707 0/1:81,12:93:77.17:77,0,2170 0/0:67,3:70:99:0,150,2064 0/0:69,6:75:97.72:0,98,2130 0/0:74,7:81:40.38:0,40,2097 0/0:89,5:94:99:0,105,2707 0/1:210,30:240:99:157,0,5764 0/0:69,2:71:99:0,146,2065 0/0:92,1:93:99:0,222,2893 0/0:78,4:83:99:0,150,2408 0/0:100,8:108:99:0,116,2941 0/0:93,11:104:1.93:3,0,2604 0/0:98,9:107:99:0,107,2862 0/0:52,4:56:38.42:0,38,1511 0/0:221,14:235:99:0,308,7291 0/0:185,10:195:99:0,317,5876 0/0:212,8:220:99:0,396,6787 0/0:171,12:183:99:0,233,5478 0/0:55,6:61:27.36:0,27,1674 0/1:60,12:72:40.03:40,0,1673 0/0:65,8:73:98.59:0,99,1825 0/0:85,4:90:93.52:0,94,2432 0/0:67,4:71:95.23:0,95,2071 0/0:88,6:94:96.01:0,96,2582 0/0:59,1:60:99:0,117,1732 0/0:90,7:97:86.25:0,86,2556 0/0:88,9:98:99:0,122,2656 0/0:85,11:96:19.36:0,19,2406 0/0:67,5:72:99:0,100,1992 0/0:82,3:85:99:0,150,2426 0/0:86,8:94:87.32:0,87,2594 0/0:88,3:91:99:0,149,2706 0/0:60,4:64:99:0,114,1857 0/1:95,10:105:14.03:14,0,2775 15 50789423 . G A 6134.22 . AC=4;AF=0.048;AN=84;BaseQRankSum=-19.704;DP=4702;DS;Dels=0.00;FS=14.336;HRun=3;HaplotypeScore=1.5627;InbreedingCoeff=-0.0500;MQ=59.48;MQ0=0;MQRankSum=-1.033;QD=13.19;ReadPosRankSum=-1.362 GT:AD:DP:GQ:PL 0/0:65,0:65:99:0,187,2379 0/0:75,0:75:99:0,208,2612 0/0:78,0:78:99:0,211,2678 0/0:226,0:226:99:0,557,7629 0/1:97,84:181:99:2417,0,2930 0/0:199,0:200:99:0,527,7186 0/0:159,0:159:99:0,412,5700 0/0:179,0:179:99:0,433,5939 0/0:76,0:76:99:0,208,2670 0/0:72,0:72:99:0,193,2495 0/0:71,0:71:99:0,196,2509 0/0:97,0:97:99:0,268,3410 0/1:34,44:78:99:1154,0,961 0/0:78,0:78:99:0,217,2795 0/0:249,0:249:99:0,680,8791 0/0:58,1:59:99:0,163,2076 0/0:91,0:91:99:0,232,3008 0/1:52,36:88:99:939,0,1613 0/1:61,57:118:99:1625,0,1679 0/0:109,0:109:99:0,277,3593 0/0:126,0:127:99:0,316,4136 0/0:72,0:72:99:0,184,2374 0/0:233,1:234:99:0,568,8321 0/0:190,0:190:99:0,473,6552 0/0:221,0:221:99:0,572,7940 0/0:187,0:188:99:0,473,6542 0/0:59,0:59:99:0,163,2081 0/0:94,0:94:99:0,247,3163 0/0:76,0:76:99:0,205,2655 0/0:67,0:67:99:0,187,2393 0/0:69,0:69:99:0,184,2389 0/0:117,0:117:99:0,304,3987 0/0:66,0:66:99:0,190,2392 0/0:60,0:60:99:0,160,2060 0/0:70,0:70:99:0,199,2534 0/0:91,0:91:99:0,244,3151 0/0:107,0:109:99:0,283,3604 0/0:93,0:93:99:0,259,3289 0/0:88,0:88:99:0,250,3188 0/0:91,0:91:99:0,253,3232 0/0:76,0:76:99:0,202,2598 0/0:95,0:95:99:0,262,3350 15 50888568 . A G 6732.42 . 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T C 831.12 . 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G A 29867.06 . 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A C 26.92 . 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G A 46733.77 . AC=20;AF=0.238;AN=84;BaseQRankSum=17.355;DP=6779;DS;Dels=0.00;FS=3.637;HRun=0;HaplotypeScore=1.8938;InbreedingCoeff=0.0813;MQ=59.48;MQ0=0;MQRankSum=-0.979;QD=15.17;ReadPosRankSum=1.471 GT:AD:DP:GQ:PL 0/0:130,0:130:99:0,343,3951 0/0:137,0:137:99:0,364,4279 0/0:120,0:120:99:0,349,3983 0/1:127,123:250:99:3359,0,3537 0/1:142,108:250:99:2934,0,4112 0/1:122,128:250:99:3716,0,3513 0/1:130,120:250:99:3401,0,3708 0/0:250,0:250:99:0,656,8360 0/0:131,0:131:99:0,346,4046 0/0:126,0:126:99:0,337,3898 0/0:129,0:129:99:0,334,3980 0/1:77,64:141:99:1679,0,1970 0/0:123,0:123:99:0,310,3647 1/1:0,88:88:99:3074,250,0 0/1:139,111:250:99:2928,0,3708 1/1:0,96:96:99:3161,259,0 0/1:74,80:154:99:2206,0,1817 0/0:149,0:149:99:0,409,4800 0/1:82,74:156:99:2129,0,1841 0/1:89,80:169:99:2179,0,2189 1/1:1,189:191:99:5958,461,0 0/1:74,61:135:99:1626,0,1878 0/0:250,0:250:99:0,650,8373 0/0:249,1:250:99:0,596,8099 0/1:141,109:250:99:2991,0,3944 0/0:245,2:247:99:0,583,8258 0/0:90,0:90:99:0,244,2859 0/0:128,0:128:99:0,322,3763 0/0:102,0:102:99:0,280,3253 0/0:146,0:146:99:0,373,4388 0/0:117,1:118:99:0,298,3718 0/1:97,85:182:99:2253,0,2550 0/0:138,1:140:99:0,325,4211 0/0:140,1:143:99:0,367,4259 0/0:113,0:113:99:0,313,3604 0/0:142,0:142:99:0,382,4482 0/1:80,68:148:99:1831,0,2081 0/0:130,0:130:99:0,343,3959 0/1:69,51:120:99:1308,0,1823 0/0:117,1:118:99:0,285,3601 0/0:123,0:123:99:0,346,4020 0/0:162,0:162:99:0,427,4986 15 51829925 . A C 104.93 . AC=3;AF=0.036;AN=84;BaseQRankSum=-25.436;DP=3314;DS;Dels=0.00;FS=89.605;HRun=2;HaplotypeScore=1.0754;InbreedingCoeff=-0.0377;MQ=59.33;MQ0=0;MQRankSum=0.947;QD=0.48;ReadPosRankSum=-2.993 GT:AD:DP:GQ:PL 0/0:37,33:71:12.58:0,13,947 0/0:28,22:50:72.13:0,72,773 0/0:31,18:49:67.13:0,67,865 0/0:77,59:136:99:0,164,2209 0/0:85,52:137:99:0,206,2404 0/0:96,59:156:99:0,227,2740 0/0:82,34:116:99:0,180,2215 0/0:78,40:118:99:0,135,2148 0/0:26,16:42:44.46:0,44,670 0/0:36,22:58:74.55:0,75,1028 0/0:35,18:53:75.48:0,75,1014 0/0:33,23:56:87.12:0,87,898 0/0:40,15:55:81.66:0,82,1150 0/0:33,23:56:51.86:0,52,993 0/0:99,98:197:99:0,135,2433 0/0:36,12:48:96.16:0,96,995 0/0:39,28:68:99:0,105,1155 0/0:44,24:68:99:0,114,1244 0/1:37,41:79:64.48:64,0,890 0/0:50,17:67:99:0,138,1483 0/1:36,32:68:44.59:45,0,965 0/0:46,20:66:77.49:0,77,1282 0/0:97,68:165:99:0,235,2768 0/0:80,37:118:99:0,175,2178 0/0:96,43:140:99:0,233,2669 0/0:77,35:112:99:0,158,2017 0/0:18,13:31:45.10:0,45,484 0/0:34,30:64:42.90:0,43,949 0/0:38,16:54:53.94:0,54,1052 0/0:33,22:55:62.47:0,62,834 0/0:34,24:59:78.11:0,78,794 0/0:69,19:88:99:0,189,2183 0/0:39,19:58:99:0,108,1161 0/0:45,18:63:68.97:0,69,1235 0/0:27,21:50:78.13:0,78,837 0/0:46,27:74:99:0,123,1317 0/1:34,38:72:71.34:71,0,864 0/0:38,21:59:58.84:0,59,1035 0/0:29,21:50:78.18:0,78,861 0/0:34,26:61:27.18:0,27,851 0/0:38,21:59:39.17:0,39,941 0/0:36,29:66:63.58:0,64,950 15 51868373 . A G 35997.65 . AC=36;AF=0.429;AN=84;BaseQRankSum=22.318;DP=2631;DS;Dels=0.00;FS=121.209;HRun=0;HaplotypeScore=4.5233;InbreedingCoeff=0.2222;MQ=58.84;MQ0=0;MQRankSum=-0.408;QD=22.34;ReadPosRankSum=1.822 GT:AD:DP:GQ:PL 0/1:20,25:45:99:726,0,504 0/1:28,27:55:99:782,0,729 0/0:54,1:55:99:0,119,1771 0/1:38,33:71:99:943,0,980 0/0:88,0:90:99:0,223,2574 0/0:91,0:92:99:0,238,2896 0/0:96,0:96:99:0,235,2758 0/1:53,47:100:99:1481,0,1398 1/1:1,63:64:99:2257,187,0 0/1:21,24:45:99:707,0,512 1/1:1,44:45:99:1543,100,0 0/0:56,0:56:99:0,144,1679 0/0:52,0:52:99:0,141,1670 0/0:46,0:46:99:0,126,1492 0/1:62,52:115:99:1464,0,1526 0/0:44,0:44:99:0,126,1466 0/1:23,32:55:99:1010,0,590 0/1:32,27:59:99:812,0,832 0/0:82,0:84:99:0,232,2706 0/1:31,22:53:99:592,0,753 0/0:76,0:76:99:0,196,2339 0/0:41,0:41:99:0,111,1295 1/1:0,74:74:99:2828,217,0 1/1:1,81:82:99:3083,214,0 0/1:54,33:87:99:1063,0,1360 1/1:0,90:90:99:3424,265,0 1/1:0,30:30:84.24:982,84,0 0/1:33,13:46:99:309,0,956 1/1:0,51:51:99:1796,150,0 1/1:0,56:56:99:1967,162,0 1/1:0,67:67:99:2444,199,0 0/1:35,38:74:99:1153,0,957 1/1:0,48:49:99:1707,141,0 0/0:53,0:53:99:0,156,1845 0/0:49,1:50:99:0,104,1596 0/1:25,35:60:99:1061,0,694 0/0:61,0:62:99:0,156,1852 0/1:24,26:50:99:738,0,639 0/1:25,16:41:99:464,0,632 0/0:66,1:68:99:0,147,2074 0/1:23,22:46:99:661,0,651 0/0:55,0:55:99:0,159,1886 15 51868380 . TA T 343.38 . AC=26;AF=0.317;AN=82;BaseQRankSum=7.197;DP=1946;DS;FS=6.809;HRun=20;HaplotypeScore=167.2254;InbreedingCoeff=-0.3872;MQ=58.25;MQ0=0;MQRankSum=4.668;QD=0.27;ReadPosRankSum=7.692 GT:AD:DP:GQ:PL 0/1:26,1:27:3.98:4,0,33 0/0:36,0:36:10.91:0,11,59 0/0:38,0:38:1.92:0,2,86 0/1:49,6:57:24.69:25,0,147 0/1:67,10:82:55.63:56,0,228 0/1:73,10:86:46.87:47,0,137 0/1:66,5:74:23.75:24,0,204 0/1:61,2:67:16.19:42,0,16 0/0:41,0:41:5.60:0,6,26 0/1:33,1:34:6.68:7,0,44 0/0:30,0:30:6.07:0,6,26 0/1:35,4:41:23.39:23,0,49 0/1:30,4:35:19.02:31,0,19 0/1:38,0:38:11.48:11,0,111 0/1:97,6:105:61.19:61,0,159 0/1:24,2:29:20.40:20,0,66 0/0:40,0:40:2.97:0,3,20 0/0:39,0:42:4.01:0,4,62 0/1:52,5:57:15.73:16,0,87 0/0:36,0:39:14.06:0,14,66 0/1:48,7:59:7.97:8,0,94 0/1:31,1:33:23.60:28,0,24 0/0:49,0:49:1.72:0,2,5 0/0:53,0:50:1.36:0,1,3 0/1:49,4:56:17.60:18,0,81 0/0:53,0:51:2.80:0,3,13 ./.:.:17:.:0,0,0 0/1:26,3:31:7.94:8,0,31 0/0:36,0:36:1.72:0,2,4 0/1:36,0:36:1.73:0,1,2 1/1:47,0:47:1.36:0,1,2 0/0:49,3:53:4.64:0,5,94 0/0:29,0:29:2.97:0,3,20 0/0:37,1:40:2.99:0,3,47 0/1:29,3:34:4.22:4,0,77 0/1:41,1:43:10.02:10,0,42 0/1:52,4:56:15.27:15,0,95 0/0:28,0:28:6.41:0,6,41 0/1:29,3:32:3.79:4,0,56 0/0:45,1:47:10.39:0,10,147 0/1:35,0:38:0.47:0,0,72 0/1:49,1:55:27.90:28,0,69 15 52353498 . C G 19225.13 . AC=12;AF=0.143;AN=84;BaseQRankSum=-0.908;DP=5322;DS;Dels=0.00;FS=18.720;HRun=0;HaplotypeScore=1.7403;InbreedingCoeff=0.0278;MQ=59.51;MQ0=0;MQRankSum=3.479;QD=15.01;ReadPosRankSum=-1.746 GT:AD:DP:GQ:PL 0/0:110,0:110:99:0,304,3751 0/0:99,0:99:99:0,292,3578 0/0:92,0:92:99:0,256,3174 0/0:250,0:250:99:0,641,8598 0/0:225,0:225:99:0,632,8510 0/0:233,0:233:99:0,626,8460 0/0:212,0:212:99:0,566,7637 0/0:223,1:224:99:0,567,8065 0/0:89,0:89:99:0,259,3200 0/1:40,46:86:99:1447,0,1125 0/0:89,0:89:99:0,247,3097 0/1:37,32:69:99:952,0,1105 0/0:81,0:82:99:0,223,2762 1/1:0,77:77:99:2767,214,0 0/1:141,108:250:99:2970,0,4200 0/1:25,30:55:99:931,0,732 0/0:111,0:111:99:0,319,3957 0/1:52,43:95:99:1235,0,1599 0/1:80,67:147:99:1939,0,2346 0/0:123,0:124:99:0,328,4133 0/1:79,64:144:99:1877,0,2273 0/0:91,1:92:99:0,210,3069 0/0:250,0:250:99:0,677,9150 0/0:201,0:201:99:0,539,7308 0/0:216,0:216:99:0,575,7828 0/0:207,0:207:99:0,524,7099 0/0:58,1:59:99:0,126,1958 0/0:88,0:88:99:0,247,3056 0/0:75,0:75:99:0,214,2634 0/0:90,0:90:99:0,238,3012 0/0:96,0:96:99:0,280,3463 0/1:84,80:164:99:2384,0,2401 0/0:84,0:85:99:0,235,2904 0/0:97,0:97:99:0,277,3438 0/0:78,0:78:99:0,220,2708 0/0:103,0:103:99:0,286,3556 0/1:63,68:131:99:2020,0,1797 0/0:90,0:90:99:0,256,3193 0/1:40,23:63:99:704,0,1221 0/0:86,0:86:99:0,250,3089 0/0:94,0:94:99:0,262,3240 0/0:94,0:94:99:0,250,3134 15 52505467 . C T 1493.59 . AC=2;AF=0.024;AN=84;BaseQRankSum=6.697;DP=2126;Dels=0.00;FS=7.575;HRun=0;HaplotypeScore=1.1254;InbreedingCoeff=-0.0244;MQ=59.32;MQ0=1;MQRankSum=1.013;QD=13.10;ReadPosRankSum=1.533 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,132,1514 0/0:28,0:28:81.21:0,81,904 0/0:36,0:36:99:0,99,1138 0/0:85,0:85:99:0,229,2819 0/0:77,0:78:99:0,202,2534 0/0:68,0:68:99:0,172,2150 0/0:55,0:55:99:0,150,1893 0/1:32,21:53:99:577,0,954 0/0:59,0:59:99:0,153,1745 0/0:39,0:39:99:0,105,1191 0/0:38,0:38:99:0,108,1200 0/0:45,0:45:99:0,117,1342 0/0:36,0:36:93.23:0,93,1044 0/0:42,0:42:99:0,117,1343 0/0:141,0:141:99:0,358,4199 0/0:30,0:30:75.22:0,75,910 0/0:43,0:43:99:0,120,1329 0/0:47,0:47:99:0,120,1412 0/0:55,0:55:99:0,132,1555 0/0:70,0:70:99:0,178,2107 0/0:61,0:61:99:0,141,1653 0/0:27,0:27:75.20:0,75,843 0/0:86,0:86:99:0,223,2791 0/0:52,0:52:99:0,141,1687 0/0:62,0:62:99:0,171,2073 0/0:47,0:47:99:0,132,1617 0/0:19,0:19:54.11:0,54,587 0/1:27,34:61:99:979,0,713 0/0:41,0:41:99:0,111,1269 0/0:47,0:47:99:0,126,1454 0/0:45,0:45:99:0,120,1382 0/0:60,0:60:99:0,147,1725 0/0:33,0:33:90.23:0,90,1001 0/0:38,0:39:99:0,105,1185 0/0:34,0:34:99:0,102,1142 0/0:42,0:42:99:0,102,1205 0/0:59,0:59:99:0,162,1833 0/0:49,0:49:99:0,132,1479 0/0:35,0:35:96.26:0,96,1082 0/0:52,0:52:99:0,144,1641 0/0:33,0:33:96.24:0,96,1055 0/0:42,0:42:99:0,114,1328 15 52611351 . C T 1837.07 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.051;DP=3774;Dels=0.00;FS=1.005;HRun=0;HaplotypeScore=1.7020;InbreedingCoeff=-0.0244;MQ=59.44;MQ0=0;MQRankSum=0.035;QD=11.63;ReadPosRankSum=0.345 GT:AD:DP:GQ:PL 0/0:84,0:84:99:0,229,2791 0/0:81,0:81:99:0,211,2537 0/0:60,0:60:99:0,172,2117 0/0:166,0:166:99:0,451,5918 0/0:161,0:163:99:0,454,6027 0/0:132,0:132:99:0,379,4971 0/0:102,0:102:99:0,295,3909 0/0:114,0:114:99:0,316,4147 0/0:83,0:83:99:0,208,2633 0/0:76,0:76:99:0,214,2640 0/0:92,0:92:99:0,259,3194 0/0:80,0:80:99:0,214,2615 0/0:65,0:65:99:0,175,2167 0/0:69,0:69:99:0,175,2164 0/0:210,0:210:99:0,542,6657 0/0:86,0:86:99:0,250,3012 0/0:69,0:69:99:0,171,2130 0/1:45,33:78:99:907,0,1281 0/1:43,36:80:99:992,0,1059 0/0:104,0:104:99:0,268,3359 0/0:92,0:92:99:0,250,3057 0/0:65,0:65:99:0,169,2084 0/0:151,0:151:99:0,415,5557 0/0:89,1:90:99:0,256,3319 0/0:113,0:113:99:0,304,4059 0/0:118,0:118:99:0,319,4150 0/0:50,0:50:99:0,132,1615 0/0:59,0:59:99:0,159,1965 0/0:70,0:70:99:0,190,2322 0/0:83,0:83:99:0,232,2835 0/0:59,0:59:99:0,168,2055 0/0:104,0:104:99:0,286,3515 0/0:60,0:60:99:0,168,2093 0/0:55,0:55:99:0,156,1870 0/0:79,0:79:99:0,214,2656 0/0:90,0:90:99:0,244,3028 0/0:82,0:83:99:0,211,2540 0/0:73,0:73:99:0,205,2546 0/0:68,0:68:99:0,187,2242 0/0:76,0:76:99:0,211,2578 0/0:67,0:67:99:0,187,2302 0/0:74,0:74:99:0,217,2619 15 52611451 . A G 9822.48 . 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A C 81.17 . AC=8;AF=0.095;AN=84;BaseQRankSum=-24.118;DP=2484;Dels=0.00;FS=1519.370;HRun=2;HaplotypeScore=1.2976;InbreedingCoeff=-0.1135;MQ=59.19;MQ0=0;MQRankSum=-0.573;QD=0.20;ReadPosRankSum=-18.715 GT:AD:DP:GQ:PL 0/0:43,17:60:24.67:0,25,1428 0/0:38,6:44:34.73:0,35,1309 0/0:24,17:41:16.20:0,16,760 0/1:64,43:107:63.78:64,0,2054 0/0:55,18:73:88.41:0,88,1966 0/0:48,23:71:99:0,115,1784 0/0:45,28:73:99:0,109,1614 0/0:64,29:93:49.54:0,50,2139 0/0:35,16:51:2.13:2,0,1105 0/0:37,13:50:28.54:0,29,1181 0/1:29,14:43:23.04:23,0,949 0/0:34,13:47:79.63:0,80,1226 0/0:37,10:47:56.73:0,57,1275 0/1:26,12:38:9.32:9,0,840 0/0:124,45:169:99:0,258,4307 0/0:26,5:31:48.83:0,49,871 0/0:31,14:45:14.77:0,15,1011 0/0:41,11:52:63.97:0,64,1314 0/0:43,15:58:39.96:0,40,1434 0/0:45,17:62:99:0,108,1585 0/0:39,11:50:48.84:0,49,1337 0/1:28,19:47:19.94:20,0,843 0/0:77,29:106:99:0,109,2725 0/0:50,23:73:36.58:0,37,1772 0/0:60,30:90:66.99:0,67,2035 0/0:54,24:78:90.55:0,91,1924 0/0:30,10:40:86.86:0,87,1046 0/1:31,12:43:20.14:20,0,1001 0/1:38,11:49:19.52:20,0,1244 0/0:39,14:53:99:0,117,1409 0/0:28,6:34:50.02:0,50,929 0/0:57,26:83:84.88:0,85,1862 0/0:37,16:53:34.45:0,34,1270 0/1:32,13:45:15.18:15,0,1026 0/0:30,10:40:12.18:0,12,969 0/0:40,17:57:44.26:0,44,1353 0/0:53,10:63:60.43:0,60,1750 0/0:38,18:56:57.37:0,57,1330 0/0:33,6:39:76.61:0,77,1192 0/0:40,10:50:99:0,117,1429 0/1:25,9:34:26.37:26,0,744 0/0:36,10:46:82.70:0,83,1326 15 52635394 . T A 2087.13 . AC=3;AF=0.036;AN=84;BaseQRankSum=2.243;DP=2300;Dels=0.00;FS=6.912;HRun=1;HaplotypeScore=1.0654;InbreedingCoeff=-0.0370;MQ=59.48;MQ0=0;MQRankSum=0.041;QD=12.96;ReadPosRankSum=0.721 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,135,1654 0/0:40,0:40:99:0,105,1291 0/0:36,0:36:99:0,105,1274 0/0:102,0:102:99:0,271,3347 0/0:60,0:60:99:0,169,2082 0/0:60,0:61:99:0,163,2081 0/0:65,0:65:99:0,190,2382 0/0:67,0:67:99:0,187,2305 0/0:44,0:44:99:0,114,1389 0/0:44,0:44:99:0,126,1489 0/0:41,0:41:99:0,102,1280 0/0:46,0:46:99:0,123,1542 0/0:42,0:42:99:0,117,1416 0/0:34,0:34:93.29:0,93,1150 0/0:172,0:172:99:0,418,5184 0/0:45,0:45:99:0,126,1535 0/0:46,0:46:99:0,126,1544 0/0:35,0:35:99:0,102,1236 0/0:57,0:57:99:0,144,1764 0/0:71,0:71:99:0,193,2357 0/0:62,0:62:99:0,153,1884 0/0:37,0:37:93.29:0,93,1167 0/0:97,0:97:99:0,256,3209 0/1:32,28:60:99:822,0,894 0/1:38,34:72:99:1017,0,1096 0/0:67,0:67:99:0,162,2065 0/0:48,0:48:99:0,126,1560 0/0:44,0:44:99:0,114,1410 0/0:45,0:45:99:0,129,1577 0/0:49,0:49:99:0,126,1554 0/1:17,12:29:99:324,0,500 0/0:73,0:73:99:0,175,2215 0/0:48,0:48:99:0,123,1540 0/0:54,0:54:99:0,135,1709 0/0:40,1:41:72.21:0,72,1293 0/0:45,0:45:99:0,123,1513 0/0:58,0:58:99:0,144,1798 0/0:61,0:61:99:0,156,1916 0/0:36,0:36:93.29:0,93,1148 0/0:38,0:38:99:0,108,1317 0/0:30,0:30:87.26:0,87,1038 0/0:48,0:48:99:0,126,1584 15 54557674 . A G 204.09 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.928;DP=426;Dels=0.00;FS=2.003;HRun=0;HaplotypeScore=0.0138;InbreedingCoeff=-0.0299;MQ=59.22;MQ0=0;MQRankSum=1.390;QD=8.50;ReadPosRankSum=1.502 GT:AD:DP:GQ:PL 0/0:7,0:7:21.06:0,21,247 0/0:4,0:4:12.04:0,12,143 0/0:8,0:8:24.06:0,24,273 0/0:7,0:7:21.06:0,21,247 0/0:8,0:8:24.07:0,24,288 0/0:10,0:10:24.07:0,24,308 0/0:6,0:6:15.05:0,15,194 0/0:6,0:6:18.06:0,18,218 0/0:14,0:14:39.12:0,39,471 0/0:7,0:7:21.06:0,21,239 0/0:3,0:3:9.03:0,9,101 0/0:9,0:9:27.08:0,27,322 0/0:10,0:10:30.09:0,30,352 0/0:6,0:6:18.06:0,18,218 0/0:31,0:31:87.26:0,87,1042 0/0:4,0:4:12.04:0,12,144 0/0:7,0:7:21.06:0,21,254 0/0:8,0:8:24.07:0,24,282 0/0:18,0:18:48.15:0,48,584 0/0:17,0:17:51.15:0,51,602 0/0:18,0:18:54.17:0,54,650 0/0:15,0:15:45.14:0,45,536 0/0:8,0:8:24.07:0,24,285 0/0:5,0:5:12.04:0,12,150 0/0:12,0:12:33.10:0,33,418 0/0:10,0:10:30.09:0,30,366 0/0:9,0:9:27.07:0,27,303 0/0:13,0:13:39.12:0,39,461 0/0:7,0:7:21.06:0,21,243 0/0:12,0:12:33.10:0,33,397 0/0:10,0:10:27.08:0,27,327 0/0:18,0:18:54.16:0,54,646 0/0:11,0:11:33.10:0,33,386 0/0:11,0:11:33.10:0,33,395 0/0:8,0:8:21.06:0,21,255 0/0:9,0:9:27.08:0,27,316 0/0:8,0:8:24.07:0,24,292 0/0:10,0:10:30.09:0,30,355 0/0:9,0:9:27.05:0,27,308 0/1:6,2:8:55.23:55,0,162 0/0:9,0:9:24.07:0,24,290 0/1:9,7:16:99:211,0,265 15 54630669 . C T 1748.24 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.600;DP=4041;DS;Dels=0.00;FS=8.788;HRun=1;HaplotypeScore=1.4486;InbreedingCoeff=-0.0244;MQ=58.29;MQ0=0;MQRankSum=1.337;QD=13.24;ReadPosRankSum=-2.103 GT:AD:DP:GQ:PL 0/0:70,0:70:99:0,205,2508 0/0:60,0:60:99:0,172,2162 0/0:61,0:61:99:0,166,2096 0/0:122,1:123:99:0,346,4492 0/0:118,0:118:99:0,346,4576 0/0:140,0:140:99:0,373,5045 0/0:117,0:117:99:0,316,4256 0/0:127,0:127:99:0,346,4701 0/0:69,0:69:99:0,205,2618 0/0:79,0:79:99:0,211,2721 0/0:81,0:81:99:0,220,2834 0/0:70,0:70:99:0,202,2539 0/0:75,0:75:99:0,214,2695 0/0:48,0:48:99:0,138,1746 0/0:196,0:196:99:0,545,6951 0/0:62,0:62:99:0,181,2250 0/0:74,0:75:99:0,208,2649 0/0:68,1:69:99:0,199,2529 0/0:156,0:156:99:0,442,5596 0/0:160,0:160:99:0,454,5759 0/0:160,0:160:99:0,463,5749 0/0:105,0:105:99:0,301,3753 0/0:170,0:170:99:0,470,6307 0/0:113,0:113:99:0,328,4382 0/0:123,0:123:99:0,319,4361 0/0:100,1:102:99:0,245,3826 0/0:51,0:51:99:0,153,1905 0/0:67,0:67:99:0,196,2469 0/0:89,0:89:99:0,247,3078 0/0:77,0:77:99:0,223,2737 0/0:64,0:64:99:0,184,2282 0/0:173,0:173:99:0,466,6005 0/0:94,0:94:99:0,268,3390 0/0:78,0:78:99:0,220,2784 0/0:78,0:78:99:0,226,2843 0/0:66,0:66:99:0,190,2428 0/0:118,0:118:99:0,322,4104 0/0:83,0:83:99:0,226,2904 0/0:77,0:77:99:0,223,2833 0/1:33,32:65:99:926,0,1006 0/1:37,30:67:99:884,0,1048 0/0:65,0:65:99:0,181,2295 15 54841874 . A G 49729.46 . AC=32;AF=0.381;AN=84;BaseQRankSum=26.388;DP=4408;DS;Dels=0.00;FS=23.269;HRun=0;HaplotypeScore=1.4747;InbreedingCoeff=0.0913;MQ=59.58;MQ0=0;MQRankSum=0.523;QD=20.26;ReadPosRankSum=1.006 GT:AD:DP:GQ:PL 0/1:36,30:66:99:812,0,1070 0/1:37,44:81:99:1213,0,993 0/0:78,0:78:99:0,217,2617 0/1:89,78:167:99:2336,0,2326 0/1:76,86:162:99:2767,0,2084 0/1:73,79:152:99:2420,0,2117 0/0:153,0:153:99:0,400,5136 1/1:3,138:141:99:4844,289,0 1/1:0,75:75:99:2507,199,0 1/1:0,64:64:99:2237,178,0 0/1:23,37:60:99:1075,0,603 0/1:28,48:76:99:1451,0,760 0/1:53,48:101:99:1283,0,1378 0/1:44,45:89:99:1345,0,1163 0/0:217,0:219:99:0,560,6891 0/0:55,0:55:99:0,147,1805 0/1:35,30:65:99:776,0,987 0/1:34,43:77:99:1275,0,876 0/1:64,60:125:99:1733,0,1715 0/0:158,0:158:99:0,406,5096 0/0:131,0:131:99:0,319,4052 0/1:35,53:88:99:1379,0,946 0/0:190,1:191:99:0,474,6318 0/1:80,63:143:99:1923,0,2266 0/0:173,0:173:99:0,463,5889 1/1:0,133:133:99:4810,355,0 0/1:25,24:49:99:668,0,725 0/1:49,50:99:99:1358,0,1297 0/0:72,0:72:99:0,208,2497 0/0:73,1:74:99:0,162,2355 0/0:76,0:76:99:0,202,2503 0/0:146,0:146:99:0,370,4641 0/0:87,0:88:99:0,241,2904 0/0:84,0:84:99:0,226,2791 0/0:58,1:59:99:0,120,1854 0/0:102,0:102:99:0,259,3238 1/1:0,117:117:99:3920,313,0 1/1:0,81:81:99:2728,217,0 0/1:44,39:83:99:1036,0,1160 0/1:41,46:87:99:1335,0,1124 0/0:93,1:94:99:0,212,2999 1/1:2,72:74:99:2499,138,0 15 55663993 . T C 4631.08 . AC=4;AF=0.048;AN=84;BaseQRankSum=16.512;DP=2984;Dels=0.00;FS=2.010;HRun=0;HaplotypeScore=1.0571;InbreedingCoeff=-0.0500;MQ=59.25;MQ0=0;MQRankSum=0.472;QD=14.47;ReadPosRankSum=0.941 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,150,1835 0/0:53,0:53:99:0,141,1717 0/0:32,0:32:90.27:0,90,1082 0/0:113,0:113:99:0,292,3614 0/0:118,0:118:99:0,337,4108 0/0:102,0:102:99:0,277,3488 0/0:90,0:90:99:0,244,3030 0/0:101,1:102:99:0,271,3357 0/0:61,0:61:99:0,165,1973 0/0:53,0:53:99:0,135,1652 0/0:50,0:50:99:0,135,1613 0/0:50,0:50:99:0,144,1681 0/0:61,0:61:99:0,150,1861 0/0:48,0:48:99:0,132,1593 0/0:200,0:200:99:0,524,6340 0/0:42,0:42:99:0,114,1383 0/0:46,0:46:99:0,126,1520 0/0:49,0:49:99:0,132,1579 0/0:103,0:103:99:0,274,3349 0/0:86,0:86:99:0,238,2856 0/0:84,0:84:99:0,220,2672 0/0:66,0:66:99:0,172,2107 0/0:127,0:127:99:0,349,4256 0/1:39,52:91:99:1604,0,1065 0/0:85,0:85:99:0,235,2899 0/1:58,44:102:99:1295,0,1593 0/0:51,0:51:99:0,138,1669 0/0:62,0:62:99:0,168,2031 0/0:59,0:59:99:0,172,2030 0/0:48,0:48:99:0,123,1510 0/0:57,0:57:99:0,156,1891 0/0:82,0:82:99:0,220,2637 0/0:59,1:60:99:0,162,1930 0/0:43,0:43:99:0,126,1510 0/0:51,0:51:99:0,135,1658 0/0:59,0:59:99:0,165,1981 0/1:38,41:79:99:1119,0,996 0/0:56,0:56:99:0,150,1796 0/1:27,21:48:99:614,0,773 0/0:52,0:52:99:0,153,1808 0/0:56,0:56:99:0,162,1927 0/0:49,0:50:99:0,138,1671 15 55664018 . T C 291.77 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.251;DP=3708;Dels=0.00;FS=3.671;HRun=0;HaplotypeScore=1.4901;InbreedingCoeff=-0.0120;MQ=59.25;MQ0=0;MQRankSum=0.184;QD=5.03;ReadPosRankSum=1.139 GT:AD:DP:GQ:PL 0/0:70,0:70:99:0,190,2331 0/0:68,0:68:99:0,187,2272 0/0:53,0:53:99:0,147,1807 0/0:144,0:144:99:0,340,4374 0/0:140,0:141:99:0,370,4697 0/0:143,0:143:99:0,349,4556 0/0:105,1:106:99:0,233,3413 0/0:130,0:130:99:0,313,4027 0/0:79,0:79:99:0,211,2578 0/0:60,0:60:99:0,165,1992 0/1:44,14:58:99:338,0,1241 0/0:76,0:76:99:0,205,2522 0/0:67,0:67:99:0,169,2106 0/0:60,0:60:99:0,163,2000 0/0:222,0:223:99:0,569,7044 0/0:49,0:49:99:0,135,1666 0/0:64,0:64:99:0,178,2128 0/0:66,0:66:99:0,184,2221 0/0:106,0:106:99:0,277,3400 0/0:105,0:105:99:0,274,3376 0/0:109,0:110:99:0,256,3247 0/0:71,0:71:99:0,193,2379 0/0:156,0:156:99:0,391,5006 0/0:123,0:123:99:0,304,3930 0/0:99,0:99:99:0,253,3220 0/0:100,0:100:99:0,277,3498 0/0:56,0:56:99:0,147,1836 0/0:68,0:68:99:0,190,2305 0/0:66,0:66:99:0,181,2216 0/0:70,0:70:99:0,181,2232 0/0:70,0:70:99:0,193,2377 0/0:108,0:108:99:0,271,3397 0/0:64,0:64:99:0,169,2070 0/0:67,0:67:99:0,187,2297 0/0:69,0:69:99:0,190,2348 0/0:81,0:81:99:0,217,2660 0/0:106,0:106:99:0,259,3241 0/0:86,0:86:99:0,241,2916 0/0:58,0:58:99:0,162,1967 0/0:73,0:73:99:0,202,2444 0/0:76,0:76:99:0,196,2411 0/0:63,0:63:99:0,175,2136 15 55664110 . G C 4132.09 . AC=4;AF=0.048;AN=84;BaseQRankSum=-0.534;DP=2666;Dels=0.00;FS=3.872;HRun=1;HaplotypeScore=1.4203;InbreedingCoeff=-0.0500;MQ=59.22;MQ0=0;MQRankSum=0.944;QD=13.20;ReadPosRankSum=-0.053 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,105,1278 0/0:49,0:49:99:0,132,1603 0/0:47,0:47:99:0,132,1637 0/1:53,39:92:99:1054,0,1588 0/0:101,0:101:99:0,286,3678 0/0:103,0:103:99:0,283,3624 0/0:83,0:85:99:0,232,3005 0/0:73,0:75:99:0,199,2501 0/0:59,0:59:99:0,153,1846 0/0:45,0:45:99:0,129,1559 0/0:43,0:43:99:0,123,1490 0/0:54,0:54:99:0,135,1683 0/0:40,0:40:99:0,111,1381 0/0:51,0:51:99:0,147,1802 0/0:182,1:184:99:0,481,5839 0/0:40,0:40:99:0,108,1317 0/0:55,1:56:99:0,150,1841 0/0:54,0:54:99:0,147,1828 0/0:61,0:61:99:0,153,1943 0/0:97,0:97:99:0,265,3264 0/1:39,27:66:99:625,0,1176 0/1:24,29:53:99:637,0,647 0/1:40,61:102:99:1816,0,1221 0/0:78,0:78:99:0,220,2811 0/0:87,0:87:99:0,238,3090 0/0:60,0:60:99:0,172,2209 0/0:36,0:36:96.29:0,96,1184 0/0:52,0:52:99:0,150,1797 0/0:50,0:50:99:0,129,1594 0/0:49,0:49:99:0,135,1624 0/0:50,1:51:99:0,138,1698 0/0:63,0:63:99:0,168,2046 0/0:64,0:64:99:0,162,1982 0/0:55,0:55:99:0,156,1956 0/0:47,0:47:99:0,135,1665 0/0:62,0:62:99:0,153,1877 0/0:42,0:42:99:0,99,1225 0/0:57,0:57:99:0,156,1944 0/0:60,0:60:99:0,177,2071 0/0:49,0:49:99:0,135,1635 0/0:47,0:47:99:0,132,1622 0/0:54,0:54:99:0,156,1942 15 55664220 . G A 6684.27 . AC=6;AF=0.071;AN=84;BaseQRankSum=1.273;DP=3153;DS;Dels=0.00;FS=12.192;HRun=0;HaplotypeScore=1.2985;InbreedingCoeff=-0.0769;MQ=59.46;MQ0=0;MQRankSum=-0.794;QD=11.96;ReadPosRankSum=1.896 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,150,1818 0/0:70,0:70:99:0,190,2285 0/0:59,0:59:99:0,165,1968 0/1:54,40:94:99:1062,0,1546 0/0:113,0:113:99:0,292,3851 0/1:57,41:98:99:1055,0,1687 0/0:81,0:81:99:0,217,2868 0/1:52,54:106:99:1451,0,1491 0/0:78,0:78:99:0,208,2486 0/0:56,0:56:99:0,159,1900 0/0:60,0:60:99:0,153,1862 0/0:83,0:83:99:0,211,2553 0/0:52,1:53:99:0,118,1711 0/0:47,0:47:99:0,123,1466 0/0:238,0:238:99:0,620,7576 0/0:44,0:44:99:0,123,1475 0/0:61,0:61:99:0,169,2038 0/0:58,0:58:99:0,150,1831 0/0:92,0:92:99:0,235,2838 0/0:100,0:100:99:0,271,3333 0/1:51,38:89:99:1035,0,1387 0/1:33,24:57:99:624,0,884 0/1:60,55:115:99:1458,0,1655 0/0:101,0:101:99:0,271,3492 0/0:84,0:84:99:0,232,3045 0/0:89,0:89:99:0,235,3002 0/0:39,0:39:99:0,102,1238 0/0:55,1:56:99:0,119,1759 0/0:53,0:53:99:0,150,1808 0/0:64,0:64:99:0,175,2091 0/0:55,0:55:99:0,153,1859 0/0:77,0:77:99:0,187,2314 0/0:53,0:53:99:0,147,1767 0/0:64,0:64:99:0,178,2128 0/0:60,0:60:99:0,165,1966 0/0:75,0:75:99:0,202,2448 0/0:57,0:57:99:0,153,1804 0/0:74,0:74:99:0,214,2520 0/0:48,0:48:99:0,138,1661 0/0:63,0:64:99:0,184,2172 0/0:63,0:63:99:0,181,2130 0/0:68,0:68:99:0,190,2300 15 55912875 . T A 6602.18 . AC=9;AF=0.107;AN=84;BaseQRankSum=12.970;DP=2624;Dels=0.00;FS=24.145;HRun=1;HaplotypeScore=0.7875;InbreedingCoeff=-0.1200;MQ=59.42;MQ0=0;MQRankSum=-1.024;QD=12.23;ReadPosRankSum=-1.554 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,141,1693 0/0:52,0:52:99:0,144,1768 0/0:34,0:35:87.26:0,87,1062 0/0:93,0:93:99:0,244,3031 0/0:70,0:70:99:0,193,2403 0/1:57,36:93:99:1070,0,1739 0/1:45,29:74:99:875,0,1352 0/0:103,0:103:99:0,262,3285 0/0:47,0:47:99:0,123,1523 0/0:27,0:27:81.23:0,81,954 0/0:40,0:40:99:0,102,1260 0/1:28,17:45:99:457,0,813 0/1:24,16:40:99:446,0,705 0/1:17,26:43:99:806,0,485 0/0:195,0:195:99:0,487,5994 0/1:23,10:33:99:271,0,658 0/0:56,0:56:99:0,156,1897 0/0:50,0:50:99:0,135,1658 0/0:82,0:82:99:0,214,2659 0/0:88,0:88:99:0,229,2839 0/0:65,0:65:99:0,168,2076 0/0:38,0:38:99:0,105,1274 0/0:90,0:90:99:0,232,2911 0/1:51,41:92:99:1157,0,1467 0/1:44,36:80:99:983,0,1307 0/0:84,0:84:99:0,238,2941 0/0:44,0:44:99:0,111,1382 0/0:58,0:58:99:0,153,1876 0/1:21,19:40:99:536,0,570 0/0:40,0:40:99:0,111,1345 0/0:38,0:38:99:0,99,1224 0/0:88,0:88:99:0,211,2703 0/0:60,0:60:99:0,156,1926 0/0:48,0:48:99:0,120,1532 0/0:48,0:48:99:0,120,1502 0/0:58,0:58:99:0,156,1898 0/0:58,0:58:99:0,162,1967 0/0:58,0:58:99:0,156,1898 0/0:54,0:54:99:0,153,1851 0/0:66,0:66:99:0,184,2250 0/0:40,0:40:99:0,105,1287 0/0:61,0:61:99:0,159,1972 15 55929368 . CTTCACGGTGTAAGA C 163.42 . AC=3;AF=0.036;AN=84;BaseQRankSum=12.375;DP=4483;DS;FS=1056.645;HRun=0;HaplotypeScore=1084.7272;InbreedingCoeff=-0.0370;MQ=59.60;MQ0=0;MQRankSum=11.564;QD=0.26;ReadPosRankSum=-12.011 GT:AD:DP:GQ:PL 0/0:74,0:74:99:0,220,14927 0/0:85,0:85:99:0,253,17634 0/0:56,0:56:99:0,169,11336 0/1:215,22:237:34.25:34,0,43538 0/0:155,0:155:99:0,467,31587 0/0:160,0:159:99:0,479,33472 0/0:136,0:136:99:0,406,27117 0/1:113,28:140:99:161,0,22978 0/0:80,0:80:99:0,241,16447 0/0:65,0:65:99:0,196,13127 0/0:69,0:69:99:0,208,14140 0/0:90,0:89:99:0,268,18438 0/0:67,0:67:99:0,202,13813 0/0:58,0:58:99:0,175,11788 0/1:227,23:250:53.15:53,0,45547 0/0:54,0:54:99:0,163,11268 0/0:84,0:84:99:0,253,17592 0/0:80,0:80:99:0,241,16722 0/0:153,0:153:99:0,461,31034 0/0:157,0:157:99:0,467,31243 0/0:130,0:130:99:0,382,25327 0/0:83,0:83:99:0,250,16966 0/0:175,0:175:99:0,524,35963 0/0:132,0:132:99:0,397,26734 0/0:166,0:166:99:0,458,32658 0/0:145,0:145:99:0,433,29667 0/0:62,0:62:99:0,187,12721 0/0:68,0:68:99:0,202,13825 0/0:79,0:79:99:0,238,16327 0/0:77,0:77:99:0,232,16026 0/0:65,0:65:99:0,196,13177 0/0:141,0:141:99:0,412,28251 0/0:102,0:102:99:0,307,21094 0/0:91,0:90:99:0,274,18622 0/0:64,0:64:99:0,190,12478 0/0:87,0:87:99:0,262,17622 0/0:147,0:147:99:0,415,30197 0/0:87,0:87:99:0,262,17780 0/0:81,0:80:99:0,244,16504 0/0:91,0:91:99:0,274,19026 0/0:75,0:74:99:0,223,15377 0/0:84,0:84:99:0,253,17328 15 56122741 . A C 11807.33 . AC=9;AF=0.107;AN=84;BaseQRankSum=-19.432;DP=6370;DS;Dels=0.00;FS=3.341;HRun=0;HaplotypeScore=2.8228;InbreedingCoeff=-0.1200;MQ=59.38;MQ0=0;MQRankSum=-0.236;QD=11.88;ReadPosRankSum=-0.251 GT:AD:DP:GQ:PL 0/0:123,0:123:99:0,319,4009 0/0:113,0:113:99:0,295,3730 0/1:50,54:104:99:1356,0,1383 0/0:249,0:249:99:0,632,8126 0/0:242,1:244:99:0,626,8026 0/0:245,0:245:99:0,617,8149 0/0:246,0:246:99:0,614,8071 0/0:248,0:248:99:0,662,8499 0/0:132,0:132:99:0,337,4257 0/0:114,0:114:99:0,316,3951 0/0:119,0:119:99:0,307,3867 0/0:115,0:115:99:0,292,3718 0/0:94,0:94:99:0,232,2939 0/0:112,1:113:99:0,292,3627 0/0:250,0:250:99:0,647,8011 0/0:91,0:91:99:0,241,2988 0/0:143,0:144:99:0,370,4717 0/1:65,56:121:99:1395,0,1761 0/0:139,0:140:99:0,367,4607 0/0:191,0:191:99:0,481,6045 0/0:182,0:182:99:0,445,5671 0/1:44,25:69:99:584,0,1329 0/0:250,0:250:99:0,680,8724 0/0:250,0:250:99:0,623,8098 0/0:250,0:250:99:0,608,7989 0/0:241,2:243:99:0,563,7837 0/0:93,0:93:99:0,244,3062 0/0:126,0:126:99:0,331,4150 0/0:91,0:91:99:0,247,3055 0/0:119,1:120:99:0,277,3857 0/0:117,1:118:99:0,316,3966 0/0:162,0:162:99:0,409,5225 0/0:110,0:110:99:0,277,3491 0/1:54,64:118:99:1604,0,1660 0/1:59,56:115:99:1444,0,1563 0/0:161,1:162:99:0,415,5276 0/1:71,55:127:99:1352,0,2041 0/1:50,78:128:99:2007,0,1338 0/0:124,0:124:99:0,346,4276 0/0:124,0:124:99:0,337,4196 0/1:54,47:101:99:1248,0,1472 0/1:76,35:111:99:817,0,2255 15 56122778 . T C 1762.38 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.755;DP=5053;DS;Dels=0.00;FS=1.962;HRun=0;HaplotypeScore=1.7170;InbreedingCoeff=-0.0120;MQ=59.34;MQ0=0;MQRankSum=1.434;QD=13.77;ReadPosRankSum=0.009 GT:AD:DP:GQ:PL 0/0:90,0:90:99:0,247,3063 0/0:83,0:83:99:0,235,2865 0/0:89,0:89:99:0,235,2914 0/0:172,0:172:99:0,479,6077 0/0:191,0:191:99:0,536,6878 0/0:184,0:184:99:0,491,6412 0/0:195,0:195:99:0,539,7002 0/0:211,0:211:99:0,563,7228 0/0:105,0:105:99:0,283,3468 0/0:105,0:105:99:0,292,3594 0/0:94,0:94:99:0,265,3261 0/0:91,0:91:99:0,253,3144 0/0:80,0:80:99:0,211,2613 0/0:99,0:99:99:0,289,3549 0/0:225,0:225:99:0,608,7564 0/0:69,0:70:99:0,196,2420 0/0:116,0:116:99:0,322,3965 0/0:96,0:97:99:0,268,3285 0/0:113,0:113:99:0,310,3868 0/0:133,0:133:99:0,361,4511 0/0:146,0:146:99:0,382,4805 0/0:53,0:53:99:0,150,1822 0/0:208,0:209:99:0,581,7490 0/0:177,0:177:99:0,472,6063 0/0:200,0:201:99:0,536,6988 0/0:186,1:187:99:0,500,6484 0/0:79,1:80:99:0,220,2723 0/0:111,0:111:99:0,304,3753 0/0:82,0:82:99:0,229,2857 0/0:77,0:77:99:0,217,2664 0/0:88,0:88:99:0,250,3117 0/0:125,0:125:99:0,331,4190 0/0:67,0:67:99:0,196,2400 0/0:97,0:97:99:0,277,3455 0/0:96,0:96:99:0,247,3080 0/1:67,61:128:99:1809,0,1963 0/0:98,0:98:99:0,265,3304 0/0:100,0:100:99:0,277,3373 0/0:108,0:108:99:0,292,3639 0/0:99,0:99:99:0,274,3376 0/0:88,0:88:99:0,241,2963 0/0:91,0:91:99:0,256,3172 15 56152729 . T C 71935.75 . AC=59;AF=0.702;AN=84;BaseQRankSum=23.399;DP=3316;Dels=0.00;FS=1.833;HRun=0;HaplotypeScore=1.5421;InbreedingCoeff=-0.1959;MQ=59.08;MQ0=0;MQRankSum=0.283;QD=23.06;ReadPosRankSum=-7.986 GT:AD:DP:GQ:PL 0/1:31,34:65:99:1001,0,921 0/1:21,22:43:99:710,0,620 0/1:27,28:56:99:774,0,695 0/1:79,80:159:99:2402,0,2269 0/0:129,0:129:99:0,349,4385 0/1:63,45:109:99:1394,0,1784 1/1:0,93:93:99:3416,256,0 0/1:57,41:98:99:1219,0,1697 0/0:68,0:68:99:0,193,2322 0/1:27,29:56:99:859,0,754 0/1:23,17:40:99:536,0,694 1/1:0,43:43:99:1490,120,0 0/1:31,23:54:99:631,0,831 1/1:0,58:58:99:2047,163,0 0/1:98,107:205:99:3131,0,2568 1/1:0,61:61:99:2110,168,0 0/1:31,33:64:99:1008,0,841 1/1:1,63:64:99:2069,133,0 1/1:0,106:106:99:3499,277,0 1/1:0,98:98:99:3351,262,0 1/1:1,98:99:99:3533,277,0 1/1:0,59:59:99:2138,169,0 0/1:83,81:164:99:2564,0,2342 0/1:48,28:76:99:852,0,1371 0/1:53,52:105:99:1647,0,1498 1/1:0,96:96:99:3358,250,0 1/1:0,44:44:99:1525,120,0 1/1:0,60:60:99:2084,166,0 1/1:1,51:52:99:1724,105,0 0/1:30,28:58:99:892,0,885 1/1:1,47:48:99:1709,103,0 0/1:54,49:103:99:1500,0,1491 0/1:33,32:65:99:863,0,940 1/1:0,72:73:99:2477,193,0 1/1:1,59:60:99:2046,127,0 1/1:0,57:57:99:2057,165,0 1/1:1,106:107:99:3570,258,0 0/1:35,34:69:99:1018,0,980 0/1:31,31:62:99:879,0,878 0/1:39,31:70:99:918,0,1083 0/1:32,29:61:99:836,0,952 1/1:0,59:59:99:2101,166,0 15 56243766 . C T 47.84 . AC=3;AF=0.041;AN=74;BaseQRankSum=0.645;DP=146;Dels=0.00;FS=1.697;HRun=0;HaplotypeScore=0.1520;InbreedingCoeff=-0.1203;MQ=58.42;MQ0=0;MQRankSum=1.187;QD=4.35;ReadPosRankSum=-0.591 GT:AD:DP:GQ:PL 0/0:3,0:3:6.02:0,6,78 0/0:5,0:5:15.04:0,15,170 0/0:5,0:5:12.03:0,12,144 ./. 0/0:3,0:3:9.03:0,9,109 0/0:3,0:3:9.03:0,9,117 0/0:4,0:4:12.04:0,12,144 0/0:3,0:3:6.02:0,6,83 0/0:4,0:4:9.02:0,9,100 ./. 0/0:2,0:2:6.02:0,6,70 0/0:2,0:2:6.02:0,6,73 0/0:5,0:5:15.05:0,15,180 0/0:3,0:3:9.03:0,9,103 0/0:15,0:15:39.10:0,39,459 0/0:3,0:3:9.03:0,9,109 0/0:2,0:2:6.02:0,6,70 0/0:1,0:1:3.01:0,3,35 0/0:8,0:8:21.06:0,21,248 0/0:4,0:4:12.03:0,12,141 0/0:5,1:6:0.85:7,0,147 0/0:3,0:3:9.03:0,9,102 0/1:1,1:2:29.23:29,0,32 0/1:3,2:5:63.55:64,0,68 0/1:3,1:4:24.94:25,0,104 ./. 0/0:1,0:1:3.01:0,3,36 0/0:4,0:4:9.03:0,9,109 0/0:4,0:4:12.04:0,12,145 0/0:1,0:1:3.01:0,3,33 ./. 0/0:6,0:6:12.04:0,12,162 0/0:4,0:4:12.03:0,12,127 0/0:4,0:4:12.04:0,12,143 0/0:1,0:1:3.01:0,3,32 ./. 0/0:7,0:7:18.05:0,18,206 0/0:3,0:3:6.02:0,6,83 0/0:5,0:5:15.04:0,15,171 0/0:4,0:4:12.03:0,12,139 0/0:2,0:2:6.02:0,6,73 0/0:5,0:5:12.04:0,12,152 15 56723672 . A C 440.24 . AC=12;AF=0.143;AN=84;BaseQRankSum=-18.496;DP=1695;Dels=0.00;FS=422.440;HRun=1;HaplotypeScore=1.1859;InbreedingCoeff=-0.2007;MQ=58.93;MQ0=0;MQRankSum=0.534;QD=1.10;ReadPosRankSum=-12.504 GT:AD:DP:GQ:PL 0/1:9,13:22:18.26:18,0,260 0/0:24,18:42:44.21:0,44,773 0/0:18,14:32:48.14:0,48,574 0/0:42,41:83:16.94:0,17,1397 0/0:34,32:66:60.53:0,61,970 0/0:44,32:76:99:0,114,1442 0/0:28,27:55:58.55:0,59,964 0/0:35,26:61:71.90:0,72,1293 0/0:22,17:39:63.18:0,63,759 0/1:15,18:33:7.12:7,0,496 0/0:16,13:29:45.11:0,45,521 0/0:17,20:37:4.78:0,5,541 0/1:12,18:30:83.99:84,0,358 0/0:10,19:29:30.07:0,30,349 0/1:54,47:101:90.63:91,0,1711 0/1:9,4:13:10.28:10,0,239 0/0:17,15:32:40.93:0,41,474 0/0:13,13:26:33.10:0,33,407 0/1:10,13:23:62.21:62,0,302 0/0:29,14:43:51.51:0,52,841 0/1:10,17:27:83.93:84,0,285 0/0:12,21:33:30.09:0,30,368 0/0:44,41:85:6.62:0,7,1296 0/0:28,33:61:22.58:0,23,918 0/0:28,36:64:55.81:0,56,960 0/0:34,34:68:18.38:0,18,1078 0/0:9,14:23:23.10:0,23,257 0/1:17,19:36:69.31:69,0,564 0/0:14,15:29:42.13:0,42,505 0/0:19,14:33:3.07:0,3,618 0/1:16,24:40:41.78:42,0,325 0/0:17,10:28:14.69:0,15,493 0/0:16,22:38:2.52:1,0,529 0/0:16,16:32:39.10:0,39,459 0/0:25,10:35:65.96:0,66,752 0/0:12,19:31:2.85:0,0,338 0/1:11,9:20:57.23:57,0,337 0/0:20,9:29:1.96:0,2,549 0/1:10,14:24:24.10:24,0,329 0/1:14,17:31:27.75:28,0,396 0/0:12,12:24:30.09:0,30,368 0/0:18,14:32:50.19:0,50,601 15 56723681 . C T 1085.99 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.167;DP=1889;Dels=0.00;FS=4.393;HRun=2;HaplotypeScore=1.3872;InbreedingCoeff=-0.0120;MQ=58.42;MQ0=0;MQRankSum=0.599;QD=15.30;ReadPosRankSum=-0.031 GT:AD:DP:GQ:PL 0/0:29,0:29:84.27:0,84,1074 0/0:41,0:41:99:0,102,1331 0/0:36,0:36:99:0,99,1271 0/0:85,0:85:99:0,226,3076 0/1:34,37:71:99:1132,0,1017 0/0:79,0:79:99:0,217,2957 0/0:58,0:58:99:0,154,2118 0/0:73,1:74:99:0,159,2654 0/0:50,0:50:99:0,132,1725 0/0:36,0:36:99:0,99,1289 0/0:32,0:32:90.29:0,90,1157 0/0:39,0:39:99:0,111,1441 0/0:33,0:33:99:0,99,1257 0/0:30,0:30:84.27:0,84,1079 0/0:126,0:126:99:0,316,4086 0/0:15,0:15:42.13:0,42,534 0/0:33,0:33:93.30:0,93,1202 0/0:33,0:33:93.30:0,93,1187 0/0:37,0:37:96.30:0,96,1219 0/0:48,0:48:99:0,123,1607 0/0:35,0:35:93.30:0,93,1196 0/0:36,0:36:96.31:0,96,1228 0/0:86,0:86:99:0,238,3306 0/0:64,0:64:99:0,172,2359 0/0:71,0:71:99:0,184,2564 0/0:66,0:66:99:0,175,2410 0/0:28,0:28:78.25:0,78,996 0/0:38,0:38:99:0,102,1335 0/0:37,0:37:99:0,102,1287 0/0:35,0:35:93.30:0,93,1203 0/0:43,0:43:99:0,120,1525 0/0:27,0:27:66.21:0,66,850 0/0:44,0:44:99:0,117,1525 0/0:31,0:31:90.29:0,90,1150 0/0:36,0:36:87.27:0,87,1140 0/0:35,0:35:99:0,99,1273 0/0:32,0:32:93.29:0,93,1159 0/0:33,0:33:87.27:0,87,1109 0/0:28,0:28:81.26:0,81,1040 0/0:35,0:35:99:0,102,1294 0/0:27,0:27:75.24:0,75,951 0/0:37,0:37:96.31:0,96,1256 15 56723692 . C T 1029.28 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.353;DP=1908;Dels=0.00;FS=6.786;HRun=0;HaplotypeScore=0.4837;InbreedingCoeff=-0.0244;MQ=58.78;MQ0=0;MQRankSum=0.670;QD=13.20;ReadPosRankSum=-0.605 GT:AD:DP:GQ:PL 0/0:32,0:32:90.22:0,90,994 0/0:39,0:39:99:0,105,1196 0/0:33,0:33:87.24:0,87,996 0/0:85,0:85:99:0,220,2734 0/0:67,0:67:99:0,187,2286 0/0:81,0:81:99:0,202,2591 0/0:58,0:59:99:0,147,1865 0/0:75,0:75:99:0,202,2504 0/0:51,0:51:99:0,132,1550 0/0:36,0:36:99:0,99,1126 0/0:30,0:30:84.23:0,84,961 0/0:42,0:42:99:0,114,1295 0/0:38,0:38:99:0,108,1204 0/0:32,0:32:90.24:0,90,998 0/0:118,0:118:99:0,301,3490 0/0:15,0:15:42.11:0,42,477 0/0:28,0:28:84.22:0,84,919 0/0:34,0:34:96.25:0,96,1077 0/0:41,0:41:99:0,117,1286 0/0:47,0:47:99:0,129,1483 0/0:41,0:41:99:0,111,1236 0/0:32,0:32:87.23:0,87,960 0/0:88,0:88:99:0,244,3058 0/0:61,0:61:99:0,166,2082 0/0:67,0:67:99:0,178,2238 0/0:63,0:63:99:0,166,2089 0/0:24,0:24:72.18:0,72,780 0/0:38,2:40:63.70:0,64,1145 0/0:36,0:36:99:0,99,1109 0/0:41,0:41:99:0,114,1288 0/0:44,0:44:99:0,123,1371 0/0:27,0:27:69.17:0,69,796 0/0:43,0:43:99:0,114,1324 0/0:35,0:35:99:0,99,1095 0/0:33,0:33:84.22:0,84,992 0/0:36,0:36:99:0,102,1135 0/1:20,21:41:99:528,0,469 0/1:16,21:37:99:564,0,380 0/0:31,0:31:90.21:0,90,980 0/0:34,0:34:99:0,99,1103 0/0:27,0:27:72.17:0,72,790 0/0:44,0:44:99:0,111,1307 15 56756285 . T G 7008.86 . AC=4;AF=0.048;AN=84;BaseQRankSum=18.140;DP=5551;DS;Dels=0.00;FS=6.548;HRun=1;HaplotypeScore=1.8507;InbreedingCoeff=-0.0500;MQ=59.53;MQ0=0;MQRankSum=0.400;QD=13.66;ReadPosRankSum=-4.920 GT:AD:DP:GQ:PL 0/0:104,0:104:99:0,286,3530 0/0:86,0:86:99:0,241,2943 0/0:94,0:94:99:0,259,3169 0/0:249,0:249:99:0,662,8298 0/0:240,0:240:99:0,641,8157 0/0:249,0:250:99:0,665,8609 0/1:114,98:213:99:2940,0,3425 0/0:234,0:234:99:0,602,7657 0/0:108,0:108:99:0,301,3687 0/0:80,0:80:99:0,226,2731 0/0:93,0:93:99:0,268,3235 0/1:50,35:85:99:1025,0,1481 0/1:41,40:81:99:1181,0,1219 0/0:101,0:101:99:0,286,3511 0/0:249,1:250:99:0,665,8127 0/0:58,0:58:99:0,165,2002 0/0:103,0:103:99:0,286,3513 0/0:108,0:109:99:0,304,3711 0/0:167,0:167:99:0,439,5483 0/0:149,0:149:99:0,415,5116 0/0:150,0:150:99:0,406,5040 0/0:98,0:99:99:0,262,3200 0/0:249,0:250:99:0,647,8208 0/0:176,0:176:99:0,469,6003 0/0:204,0:204:99:0,548,6955 0/0:221,0:221:99:0,593,7471 0/0:68,0:68:99:0,196,2401 0/0:116,0:116:99:0,313,3842 0/0:77,0:77:99:0,217,2665 0/0:97,0:97:99:0,262,3256 0/0:87,0:87:99:0,244,3023 0/1:68,66:134:99:1863,0,1897 0/0:83,1:84:99:0,187,2662 0/0:103,0:103:99:0,292,3586 0/0:101,0:101:99:0,271,3372 0/0:104,0:104:99:0,277,3443 0/0:131,0:131:99:0,352,4315 0/0:107,0:107:99:0,295,3603 0/0:110,0:110:99:0,301,3729 0/0:86,0:86:99:0,253,3087 0/0:79,0:79:99:0,229,2790 0/0:113,0:113:99:0,301,3725 15 56756420 . C T 3994.34 . AC=2;AF=0.024;AN=84;BaseQRankSum=-14.009;DP=5977;DS;Dels=0.00;FS=18.247;HRun=0;HaplotypeScore=1.8403;InbreedingCoeff=-0.0244;MQ=59.62;MQ0=0;MQRankSum=0.038;QD=9.56;ReadPosRankSum=-0.483 GT:AD:DP:GQ:PL 0/0:106,0:106:99:0,286,3650 0/0:121,0:121:99:0,313,4054 0/0:90,0:90:99:0,247,3170 0/0:249,0:249:99:0,680,9325 0/0:249,0:249:99:0,683,9510 0/1:144,78:222:99:2088,0,4599 0/0:229,0:229:99:0,611,8464 0/1:121,75:196:99:1906,0,4010 0/0:128,0:128:99:0,343,4422 0/0:103,0:104:99:0,274,3534 0/0:103,1:104:99:0,252,3589 0/0:122,0:122:99:0,331,4233 0/0:105,0:105:99:0,259,3373 0/0:110,0:110:99:0,307,3927 0/0:241,0:241:99:0,653,8413 0/0:83,0:83:99:0,226,2888 0/0:107,0:107:99:0,304,3836 0/0:124,0:124:99:0,346,4412 0/0:201,0:201:99:0,503,6490 0/0:136,0:136:99:0,364,4718 0/0:148,0:148:99:0,400,5127 0/0:101,1:102:99:0,239,3355 0/0:238,0:238:99:0,626,8773 0/0:227,0:227:99:0,614,8510 0/0:231,0:231:99:0,602,8382 0/0:241,0:241:99:0,608,8460 0/0:84,0:84:99:0,238,3013 0/0:127,0:127:99:0,349,4450 0/0:100,0:100:99:0,268,3458 0/0:100,0:100:99:0,271,3468 0/0:101,0:101:99:0,268,3474 0/0:120,0:120:99:0,307,3985 0/0:91,0:91:99:0,247,3137 0/0:125,0:125:99:0,352,4487 0/0:90,0:90:99:0,256,3273 0/0:97,0:97:99:0,271,3445 0/0:126,0:126:99:0,337,4351 0/0:120,0:120:99:0,307,3979 0/0:122,0:122:99:0,331,4224 0/0:118,0:118:99:0,319,4098 0/0:117,0:117:99:0,310,3996 0/0:124,0:124:99:0,334,4307 15 56946633 . G T 1229.46 . AC=23;AF=0.274;AN=84;BaseQRankSum=-23.238;DP=2764;Dels=0.00;FS=2045.980;HRun=1;HaplotypeScore=1.4118;InbreedingCoeff=-0.3795;MQ=59.19;MQ0=0;MQRankSum=-1.558;QD=0.78;ReadPosRankSum=-19.052 GT:AD:DP:GQ:PL 0/0:47,16:63:74.47:0,74,1516 0/0:45,12:57:96.32:0,96,1501 0/1:37,20:57:99:128,0,1083 0/1:30,29:59:97.68:98,0,621 0/1:50,21:71:60.15:60,0,1565 0/1:38,17:55:93.23:93,0,1192 0/1:37,16:53:85.91:86,0,1049 0/1:40,14:54:35.47:35,0,1120 0/1:54,14:68:2.54:0,1,1595 0/0:42,5:47:43.58:0,44,1238 0/1:50,15:65:32.34:32,0,1581 0/0:57,13:70:75.60:0,76,1658 0/1:40,13:53:29.84:30,0,1263 0/1:39,14:53:77.68:78,0,1184 0/1:172,63:236:13.22:13,0,5160 0/1:38,13:51:76.04:76,0,1165 0/0:60,18:78:54.12:0,54,1596 0/1:45,18:63:99:131,0,1411 0/1:61,17:78:63.55:64,0,1799 0/0:67,12:79:94.71:0,95,2081 0/0:59,17:76:49.80:0,50,1969 0/0:34,13:47:3.11:0,3,950 0/1:41,16:57:77.91:78,0,1153 0/1:36,17:53:41.51:42,0,991 0/0:45,18:63:26.66:0,27,1347 0/0:46,17:63:64.98:0,65,1450 0/1:32,9:41:31.75:32,0,922 0/1:56,25:81:99:145,0,1668 0/1:44,11:55:19.03:19,0,1361 0/0:54,16:70:5.52:0,6,1707 0/0:47,14:61:17.23:0,17,1492 0/1:59,17:76:37.79:38,0,1719 0/0:45,12:57:36.83:0,37,1408 0/0:50,5:55:89.24:0,89,1661 0/0:42,12:54:8.99:0,9,1159 0/1:60,14:74:47.10:47,0,1723 0/0:51,5:56:85.14:0,85,1691 0/1:52,14:66:33.87:34,0,1594 0/0:48,13:61:14.20:0,14,1406 0/0:57,14:71:24.52:0,25,1629 0/1:47,16:63:43.02:43,0,1419 0/0:41,13:54:21.10:0,21,1243 15 56946703 . TA T 162.76 . AC=8;AF=0.095;AN=84;BaseQRankSum=16.872;DP=2727;DS;FS=3.675;HRun=10;HaplotypeScore=154.3660;InbreedingCoeff=-0.1241;MQ=59.33;MQ0=0;MQRankSum=2.773;QD=0.35;ReadPosRankSum=-0.239 GT:AD:DP:GQ:PL 0/0:69,7:78:9.77:0,10,1646 0/1:54,6:61:45.06:45,0,1158 0/1:45,5:50:13.67:14,0,964 0/0:42,2:44:56.17:0,56,1073 0/0:42,4:46:1.05:0,1,925 0/0:38,2:39:26.08:0,26,735 0/0:48,3:51:65.17:0,65,1165 0/0:47,2:47:64.82:0,65,1145 0/0:61,5:67:25.83:0,26,1392 0/0:60,4:64:51.98:0,52,1468 0/1:73,8:81:48.75:49,0,1452 0/0:53,1:56:70.25:0,70,1179 0/0:54,2:56:84.22:0,84,1341 0/0:45,2:47:53.17:0,53,1037 0/0:164,4:168:99:0,245,3787 0/0:54,3:57:56.93:0,57,1295 0/0:71,2:73:99:0,111,1884 0/0:71,2:74:99:0,109,1686 0/0:82,4:88:99:0,106,2047 0/0:87,5:92:74.24:0,74,1949 0/0:87,6:93:40.01:0,40,2008 0/0:44,2:47:29.13:0,29,968 0/1:34,5:41:25.35:25,0,849 0/0:37,2:37:35.12:0,35,844 0/1:37,6:43:51.24:51,0,837 0/1:35,3:37:17.16:17,0,724 0/0:43,1:45:70.03:0,70,981 0/0:74,3:78:75.06:0,75,1489 0/0:60,3:64:62.93:0,63,1345 0/0:71,0:73:99:0,177,1907 0/0:63,3:66:57.15:0,57,1302 0/1:86,12:99:65.97:66,0,1980 0/0:44,3:47:42.14:0,42,1142 0/0:57,4:61:35.63:0,36,1269 0/0:59,5:65:29.91:0,30,1420 0/0:59,4:64:40:0,40,1321 0/0:83,4:87:99:0,112,2149 0/0:68,1:69:99:0,127,1634 0/0:66,6:72:0.98:6,0,1296 0/0:67,5:73:28.96:0,29,1439 0/0:61,4:65:42.99:0,43,1370 0/1:49,6:55:21:21,0,1152 15 56985294 . A C 503.98 . 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C A 1620.30 . 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C T 2485.42 . 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G A 2574.47 . 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T C 98962.37 . 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C T 54886.50 . 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A G 5341.57 . 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A G 1879.58 . 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A G 47967 . 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C G 48779.14 . 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C T 4008.94 . 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C T 216.38 . 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G A 7519.95 . AC=9;AF=0.107;AN=84;BaseQRankSum=-8.389;DP=1933;DS;Dels=0.00;FS=10.867;HRun=0;HaplotypeScore=1.1561;InbreedingCoeff=-0.1200;MQ=59.19;MQ0=0;MQRankSum=1.265;QD=13.10;ReadPosRankSum=1.276 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,135,1620 0/0:38,0:38:99:0,108,1252 0/0:39,0:39:99:0,108,1267 0/1:41,38:79:99:987,0,1272 0/0:62,0:63:99:0,178,2287 0/0:50,0:50:99:0,129,1662 0/0:42,0:42:99:0,117,1482 0/0:45,0:46:99:0,129,1651 0/0:39,0:39:99:0,114,1360 0/0:27,0:27:72.19:0,72,826 0/0:37,0:37:99:0,108,1326 0/0:38,0:38:99:0,105,1270 0/0:36,0:37:99:0,105,1229 0/0:32,0:32:90.25:0,90,1067 0/1:64,64:129:99:1653,0,1732 0/0:32,0:32:87.25:0,87,1051 0/1:18,20:38:99:565,0,454 0/1:25,18:43:99:504,0,712 0/1:32,33:68:99:854,0,855 0/0:63,2:66:99:0,168,2021 0/0:51,0:51:99:0,144,1726 0/0:35,0:35:99:0,102,1200 0/1:52,51:103:99:1426,0,1565 0/0:56,0:56:99:0,147,1870 0/0:64,0:64:99:0,178,2230 0/0:41,0:41:99:0,111,1389 0/0:31,0:31:90.25:0,90,1045 0/0:33,0:33:96.29:0,96,1155 0/0:30,0:30:87.24:0,87,1052 0/1:17,15:32:99:422,0,483 0/0:32,0:32:90.24:0,90,1055 0/0:61,0:62:99:0,162,1909 0/1:22,18:40:99:473,0,592 0/0:35,0:36:99:0,105,1240 0/0:28,0:28:78.24:0,78,967 0/0:41,0:41:99:0,114,1362 0/0:53,0:53:99:0,144,1714 0/0:33,0:33:99:0,99,1198 0/0:37,0:37:96.26:0,96,1156 0/0:33,0:33:96.25:0,96,1112 0/0:28,1:29:48.98:0,49,921 0/1:18,24:42:99:636,0,464 15 59383295 . A G 941.80 . 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G A 2298.05 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.963;DP=3255;DS;Dels=0.00;FS=0.872;HRun=3;HaplotypeScore=1.6753;InbreedingCoeff=-0.0244;MQ=59.43;MQ0=0;MQRankSum=-0.739;QD=14.54;ReadPosRankSum=1.768 GT:AD:DP:GQ:PL 0/0:71,0:71:99:0,205,2577 0/0:54,0:54:99:0,162,2001 0/0:52,0:52:99:0,150,1900 0/0:87,0:87:99:0,250,3305 0/0:91,0:91:99:0,259,3490 0/0:95,0:95:99:0,283,3786 0/0:88,0:88:99:0,250,3371 0/0:76,0:77:99:0,226,2999 0/0:85,0:85:99:0,253,3161 0/0:76,0:76:99:0,220,2754 0/0:75,0:75:99:0,217,2696 0/0:72,0:72:99:0,211,2642 0/1:32,38:70:99:1160,0,958 0/0:75,0:75:99:0,220,2780 0/0:183,0:183:99:0,530,6702 0/0:70,0:70:99:0,205,2574 0/0:75,0:75:99:0,217,2746 0/0:73,0:73:99:0,205,2622 0/0:92,0:94:99:0,259,3274 0/1:48,40:88:99:1200,0,1445 0/0:81,0:82:99:0,235,2982 0/0:61,0:62:99:0,178,2222 0/0:106,0:106:99:0,313,4171 0/0:76,0:76:99:0,223,2971 0/0:86,0:86:99:0,250,3355 0/0:54,0:55:99:0,160,2120 0/0:55,0:55:99:0,159,2012 0/0:90,0:90:99:0,265,3336 0/0:87,0:87:99:0,241,3074 0/0:70,0:70:99:0,208,2611 0/0:66,0:66:99:0,199,2505 0/0:87,0:88:99:0,244,3128 0/0:53,0:53:99:0,156,1983 0/0:49,0:49:99:0,141,1791 0/0:74,0:74:99:0,217,2749 0/0:67,0:68:99:0,199,2485 0/0:74,0:74:99:0,214,2652 0/0:74,0:74:99:0,211,2629 0/0:75,0:75:99:0,223,2839 0/0:79,0:79:99:0,235,2962 0/0:60,0:62:99:0,178,2218 0/0:72,0:72:99:0,208,2659 15 59784493 . C T 35731.09 . 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T C 492.04 . 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T C 1249.92 . 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T C 1538.56 . 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G T 121109.03 . 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T C 14976.78 . 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G A 14457.99 . 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T C 4167.44 . 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C G 1004.01 . 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T C 1475.87 . 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G A 5618.08 . AC=4;AF=0.048;AN=84;BaseQRankSum=-16.110;DP=4253;Dels=0.00;FS=3.907;HRun=1;HaplotypeScore=1.2255;InbreedingCoeff=0.4750;MQ=59.55;MQ0=0;MQRankSum=0.583;QD=15.31;ReadPosRankSum=0.153 GT:AD:DP:GQ:PL 0/0:75,0:75:99:0,214,2720 0/0:72,0:72:99:0,205,2585 0/0:84,0:84:99:0,238,3045 0/0:191,0:191:99:0,506,6866 0/0:159,1:160:99:0,416,5994 0/0:162,0:162:99:0,457,6191 0/0:155,0:156:99:0,433,5797 0/0:145,0:145:99:0,400,5426 0/0:67,0:67:99:0,196,2485 0/0:79,0:80:99:0,208,2688 0/0:75,0:75:99:0,208,2631 0/0:78,0:78:99:0,223,2854 0/0:76,0:76:99:0,214,2677 0/0:69,0:69:99:0,187,2364 0/1:122,105:227:99:2856,0,3711 1/1:0,44:44:99:1546,129,0 0/0:80,0:80:99:0,220,2836 0/0:79,1:80:99:0,217,2752 0/0:114,0:114:99:0,301,3804 0/1:52,44:96:99:1216,0,1521 0/0:127,0:128:99:0,361,4510 0/0:66,0:66:99:0,184,2331 0/0:196,0:196:99:0,530,7207 0/0:144,0:144:99:0,400,5454 0/0:146,1:147:99:0,391,5317 0/0:141,0:141:99:0,391,5233 0/0:61,0:61:99:0,165,2074 0/0:55,0:55:99:0,159,1996 0/0:79,0:79:99:0,217,2796 0/0:85,0:85:99:0,223,2877 0/0:55,0:55:99:0,150,1900 0/0:118,0:118:99:0,328,4258 0/0:67,0:67:99:0,181,2330 0/0:72,0:72:99:0,211,2665 0/0:91,0:91:99:0,259,3307 0/0:98,0:98:99:0,277,3537 0/0:124,0:124:99:0,322,4050 0/0:87,0:87:99:0,247,3124 0/0:82,0:82:99:0,232,2924 0/0:83,0:83:99:0,235,2938 0/0:61,0:61:99:0,178,2200 0/0:82,0:82:99:0,232,2976 15 62259637 . C T 49067.54 . AC=54;AF=0.643;AN=84;BaseQRankSum=-12.988;DP=2484;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=0.6123;InbreedingCoeff=0.0667;MQ=59.66;MQ0=0;MQRankSum=1.718;QD=22.92;ReadPosRankSum=-1.660 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,123,1597 0/1:24,19:43:99:545,0,766 1/1:0,51:51:99:1715,135,0 1/1:1,74:75:99:2355,147,0 0/1:39,37:76:99:1077,0,1223 0/1:37,47:84:99:1426,0,1144 0/0:69,0:69:99:0,193,2650 1/1:0,61:61:99:2197,169,0 1/1:0,34:34:93.30:1196,93,0 1/1:0,46:46:99:1531,120,0 1/1:0,53:53:99:1736,135,0 0/1:29,31:60:99:967,0,885 0/1:29,28:57:99:785,0,835 1/1:0,54:54:99:1920,153,0 0/1:102,83:185:99:2323,0,2780 1/1:1,36:37:56.86:1106,57,0 0/1:29,19:48:99:573,0,844 0/0:46,0:46:99:0,132,1707 0/0:68,0:68:99:0,178,2321 0/1:35,37:72:99:1035,0,1013 0/1:41,39:80:99:1076,0,1176 0/0:52,0:52:99:0,132,1708 1/1:0,82:82:99:2744,208,0 1/1:0,75:75:99:2618,199,0 1/1:0,70:70:99:2525,193,0 1/1:0,65:65:99:2295,175,0 0/1:16,13:29:99:353,0,440 1/1:0,50:50:99:1750,138,0 0/1:23,17:40:99:496,0,700 0/1:25,22:47:99:598,0,708 1/1:0,33:33:90.29:1147,90,0 1/1:0,54:54:99:1776,138,0 0/1:25,24:49:99:712,0,717 1/1:0,43:43:99:1513,120,0 1/1:0,53:53:99:1765,138,0 0/1:37,23:60:99:611,0,1114 0/1:31,27:59:99:781,0,840 0/0:62,0:62:99:0,175,2250 0/1:27,29:57:99:865,0,875 0/1:33,27:60:99:774,0,956 1/1:3,48:51:49.08:1531,49,0 0/1:25,23:48:99:648,0,726 15 62261612 . T C 594.98 . AC=2;AF=0.024;AN=84;BaseQRankSum=7.054;DP=985;Dels=0.00;FS=4.093;HRun=0;HaplotypeScore=0.2273;InbreedingCoeff=-0.0245;MQ=59.36;MQ0=0;MQRankSum=0.759;QD=11.02;ReadPosRankSum=-0.041 GT:AD:DP:GQ:PL 0/0:19,0:19:54.16:0,54,641 0/0:30,0:30:78.24:0,78,958 0/0:20,0:20:57.17:0,57,676 0/0:20,0:20:57.17:0,57,660 0/0:18,0:18:51.13:0,51,606 0/0:22,0:22:63.19:0,63,777 0/0:15,0:15:45.11:0,45,522 0/0:14,0:14:39.12:0,39,477 0/1:16,8:24:99:238,0,470 0/1:15,15:30:99:420,0,409 0/0:28,0:28:75.23:0,75,913 0/0:23,0:23:63.19:0,63,764 0/0:29,0:29:81.24:0,81,955 0/0:18,0:18:48.15:0,48,590 0/0:74,0:74:99:0,208,2433 0/0:17,0:17:48.15:0,48,575 0/0:20,0:20:60.18:0,60,702 0/0:27,0:27:66.19:0,66,802 0/0:32,0:32:81.22:0,81,978 0/0:45,0:45:99:0,117,1449 0/0:34,0:34:84.26:0,84,1032 0/0:26,0:26:66.20:0,66,808 0/0:16,0:16:45.14:0,45,545 0/0:11,0:11:33.10:0,33,401 0/0:14,0:14:42.13:0,42,507 0/0:12,0:12:33.10:0,33,399 0/0:8,0:8:24.07:0,24,283 0/0:22,0:22:63.18:0,63,741 0/0:23,0:23:63.19:0,63,763 0/0:25,0:25:69.21:0,69,831 0/0:23,0:23:66.18:0,66,778 0/0:24,0:24:63.19:0,63,774 0/0:20,0:20:57.17:0,57,674 0/0:19,0:19:54.17:0,54,654 0/0:30,0:30:81.25:0,81,982 0/0:23,0:23:66.20:0,66,790 0/0:24,0:24:63.19:0,63,762 0/0:30,0:30:81.24:0,81,970 0/0:15,0:15:42.13:0,42,502 0/0:25,0:25:75.22:0,75,883 0/0:19,0:19:54.15:0,54,636 0/0:17,0:17:51.15:0,51,603 15 62283935 . A AC 103.90 . AC=1;AF=0.012;AN=84;BaseQRankSum=9.900;DP=7026;DS;FS=2183.841;HRun=2;HaplotypeScore=469.3106;InbreedingCoeff=-0.0195;MQ=59.48;MQ0=0;MQRankSum=3.308;QD=0.42;ReadPosRankSum=-35.942 GT:AD:DP:GQ:PL 0/0:148,0:148:99:0,163,3430 0/0:109,0:109:85.75:0,86,2383 0/0:130,0:130:99:0,156,3126 0/0:250,0:249:41.49:0,41,3845 0/0:250,0:250:99:0,219,4189 0/0:250,0:246:64.07:0,64,3532 0/0:250,0:248:99:0,270,5096 0/0:250,0:248:99:0,269,5034 0/0:140,0:140:99:0,171,3396 0/0:113,0:113:99:0,207,2917 0/0:140,0:140:99:0,134,3393 0/0:114,0:114:99:0,171,2986 0/0:126,0:126:99:0,222,3463 0/0:127,0:127:99:0,143,3238 0/1:156,94:250:99:159,0,3097 0/0:97,0:97:99:0,148,2701 0/0:143,0:143:99:0,240,3548 0/0:128,0:128:99:0,186,3171 0/0:215,0:215:2.16:2,0,4387 0/0:234,0:234:99:0,494,6682 0/0:174,56:230:71.14:0,71,4685 0/0:133,0:133:99:0,259,3557 0/0:250,0:250:99:0,264,4226 0/0:250,0:245:99:0,390,5418 0/0:250,0:245:99:0,228,4753 0/0:250,0:248:99:0,309,4938 0/0:94,0:94:57.36:0,57,2182 0/0:134,0:134:99:0,106,3030 0/0:105,0:105:66.12:0,66,2515 0/0:118,0:118:99:0,204,3101 0/0:138,0:138:99:0,175,3463 0/0:239,0:239:99:0,484,6724 0/0:139,0:138:99:0,235,3806 0/0:104,0:104:99:0,139,2382 0/0:110,0:110:99:0,173,2735 0/0:155,0:155:99:0,211,3852 0/0:230,0:230:86.64:0,87,4530 0/0:147,0:147:99:0,134,3598 0/0:117,0:117:99:0,136,3016 0/0:117,0:117:82.13:0,82,2763 0/0:111,0:111:99:0,129,2544 0/0:141,0:141:99:0,233,3705 15 62299603 . T G 1663.32 . AC=4;AF=0.048;AN=84;BaseQRankSum=7.869;DP=1570;Dels=0.00;FS=3.705;HRun=0;HaplotypeScore=0.4704;InbreedingCoeff=-0.0500;MQ=59.48;MQ0=0;MQRankSum=0.544;QD=12.70;ReadPosRankSum=-2.391 GT:AD:DP:GQ:PL 0/0:34,0:34:93.29:0,93,1149 0/0:39,0:39:99:0,111,1340 0/0:37,0:37:99:0,108,1307 0/0:58,0:58:99:0,166,2001 0/0:63,0:63:99:0,184,2225 0/0:49,0:49:99:0,135,1739 0/0:53,0:53:99:0,156,1898 0/0:45,0:45:99:0,123,1494 0/0:32,0:32:96.29:0,96,1143 0/0:29,0:29:84.24:0,84,978 0/0:26,0:26:72.22:0,72,876 0/1:17,17:34:99:489,0,508 0/0:31,0:31:81.24:0,81,979 0/1:18,7:25:99:201,0,490 0/0:78,0:78:99:0,226,2660 0/0:18,0:18:54.16:0,54,645 0/0:32,0:32:87.27:0,87,1074 0/0:30,0:30:84.26:0,84,1019 0/0:42,0:42:99:0,111,1384 0/0:38,0:38:99:0,108,1285 0/0:47,0:47:99:0,123,1469 0/0:30,0:30:84.26:0,84,1015 0/0:54,0:54:99:0,153,1882 0/0:57,0:57:99:0,150,1859 0/0:48,0:48:99:0,132,1661 0/0:45,0:45:99:0,123,1506 0/0:21,0:21:60.18:0,60,724 0/0:27,0:27:75.23:0,75,902 0/0:25,0:25:72.21:0,72,864 0/0:32,1:33:69.61:0,70,1089 0/0:35,0:35:99:0,102,1226 0/0:34,0:34:96.30:0,96,1183 0/0:28,0:28:78.23:0,78,933 0/0:37,0:37:99:0,108,1316 0/0:39,0:39:99:0,117,1397 0/0:29,0:29:87.25:0,87,1032 0/1:18,15:33:99:408,0,465 0/0:27,0:27:72.22:0,72,880 0/1:19,20:39:99:652,0,569 0/0:37,0:37:99:0,99,1217 0/0:23,0:23:63.19:0,63,755 0/0:29,0:29:87.26:0,87,1039 15 62300870 . T C 510.52 . AC=2;AF=0.024;AN=84;BaseQRankSum=6.977;DP=904;Dels=0.00;FS=11.224;HRun=0;HaplotypeScore=0.5862;InbreedingCoeff=-0.0245;MQ=59.36;MQ0=0;MQRankSum=0.740;QD=12.45;ReadPosRankSum=0.350 GT:AD:DP:GQ:PL 0/0:15,0:15:42.13:0,42,502 0/0:17,0:17:45.13:0,45,545 0/0:14,0:14:42.12:0,42,487 0/0:24,0:24:57.17:0,57,711 0/0:21,0:21:54.17:0,54,669 0/0:10,0:10:27.09:0,27,345 0/0:21,0:21:45.14:0,45,592 0/0:9,0:9:27.08:0,27,316 0/0:21,0:21:60.17:0,60,693 0/0:23,0:23:60.18:0,60,724 0/0:23,0:23:63.18:0,63,752 0/1:10,8:18:99:253,0,293 0/1:13,10:23:99:320,0,368 0/0:14,1:15:42.12:0,42,486 0/0:85,0:85:99:0,208,2525 0/0:11,0:11:30.09:0,30,368 0/0:19,0:19:51.15:0,51,613 0/0:21,0:21:60.18:0,60,718 0/0:28,0:28:72.22:0,72,872 0/0:26,0:27:66.19:0,66,813 0/0:36,0:36:90.28:0,90,1114 0/0:20,0:20:54.16:0,54,648 0/0:25,0:25:54.17:0,54,702 0/0:12,0:12:33.09:0,33,392 0/0:13,0:13:36.11:0,36,435 0/0:23,0:23:57.18:0,57,715 0/0:12,0:12:36.10:0,36,413 0/0:29,0:29:78.23:0,78,929 0/0:16,0:16:48.14:0,48,565 0/0:19,0:19:54.16:0,54,638 0/0:15,0:15:39.12:0,39,486 0/0:28,0:28:66.19:0,66,810 0/0:21,0:21:54.16:0,54,663 0/0:16,0:16:45.13:0,45,535 0/0:28,0:28:72.22:0,72,888 0/0:20,0:20:54.16:0,54,649 0/0:42,0:42:99:0,105,1289 0/0:22,0:22:51.14:0,51,633 0/0:16,0:16:45.13:0,45,533 0/0:22,0:22:57.16:0,57,680 0/0:10,0:10:27.05:0,27,313 0/0:13,0:14:33.10:0,33,413 15 63102176 . G A 831.98 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.064;DP=2363;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9302;InbreedingCoeff=-0.0120;MQ=59.38;MQ0=0;MQRankSum=-0.064;QD=10.95;ReadPosRankSum=1.666 GT:AD:DP:GQ:PL 0/0:48,0:49:99:0,123,1488 0/0:43,0:43:99:0,120,1384 0/0:49,0:49:99:0,129,1539 0/0:111,0:111:99:0,271,3509 0/1:41,35:76:99:878,0,1053 0/0:40,0:40:99:0,102,1313 0/0:57,0:57:99:0,144,1851 0/0:73,0:73:99:0,162,2135 0/0:66,0:66:99:0,178,2082 0/0:42,0:42:99:0,114,1306 0/0:40,0:40:99:0,111,1314 0/0:39,0:39:99:0,105,1206 0/0:38,0:38:99:0,105,1213 0/0:53,0:53:99:0,141,1634 0/0:152,0:152:99:0,385,4517 0/0:45,0:45:99:0,120,1401 0/0:59,0:59:99:0,150,1774 0/0:47,0:47:99:0,126,1451 0/0:79,0:80:99:0,190,2273 0/0:73,0:73:99:0,187,2227 0/0:62,0:62:99:0,159,1820 0/0:47,0:47:99:0,117,1399 0/0:98,0:98:99:0,247,3214 0/0:38,0:38:96.30:0,96,1231 0/0:67,0:67:99:0,169,2147 0/0:45,0:45:99:0,117,1515 0/0:47,0:48:99:0,129,1514 0/0:51,0:51:99:0,129,1538 0/0:45,0:45:99:0,123,1381 0/0:38,0:38:99:0,111,1267 0/0:41,0:41:99:0,117,1343 0/0:82,0:83:99:0,199,2405 0/0:49,0:49:99:0,126,1479 0/0:43,0:43:99:0,111,1272 0/0:36,0:36:99:0,99,1165 0/0:51,0:51:99:0,129,1496 0/0:65,0:66:99:0,165,1962 0/0:52,0:52:99:0,135,1580 0/0:35,0:35:96.27:0,96,1126 0/0:32,0:32:93.26:0,93,1077 0/0:56,0:56:99:0,135,1592 0/0:48,0:48:99:0,129,1521 15 63351840 . C A 67986.09 . AC=57;AF=0.679;AN=84;BaseQRankSum=-28.605;DP=3290;DS;Dels=0.00;FS=30.736;HRun=2;HaplotypeScore=1.3351;InbreedingCoeff=0.0721;MQ=59.29;MQ0=0;MQRankSum=1.702;QD=24.89;ReadPosRankSum=-2.145 GT:AD:DP:GQ:PL 1/1:0,58:58:99:2009,163,0 1/1:1,54:55:99:1775,110,0 1/1:0,53:53:99:1796,147,0 1/1:1,98:99:99:3456,249,0 0/1:44,42:86:99:1235,0,1390 0/1:52,62:114:99:1957,0,1737 0/1:50,40:90:99:1219,0,1596 0/1:44,48:92:99:1403,0,1475 0/0:73,1:74:99:0,177,2670 0/0:73,0:73:99:0,205,2610 0/1:26,27:53:99:791,0,796 1/1:1,71:72:99:2399,168,0 1/1:0,50:50:99:1712,141,0 0/1:34,33:67:99:919,0,1019 0/0:248,0:248:99:0,638,8248 0/1:24,30:54:99:886,0,662 0/1:37,30:67:99:864,0,1095 0/1:20,35:55:99:1080,0,540 0/0:99,0:99:99:0,280,3556 0/1:60,44:104:99:1201,0,1863 1/1:0,92:92:99:3152,259,0 0/1:26,37:63:99:1008,0,689 1/1:0,100:100:99:3561,289,0 1/1:0,83:83:99:2926,232,0 1/1:0,76:76:99:2693,217,0 1/1:0,67:67:99:2372,193,0 1/1:0,44:44:99:1589,132,0 0/1:49,36:85:99:953,0,1567 1/1:0,62:62:99:2120,172,0 0/1:26,38:64:99:1134,0,709 1/1:0,77:77:99:2690,220,0 0/1:42,47:89:99:1369,0,1163 0/1:34,27:61:99:777,0,1086 1/1:1,83:84:99:2800,198,0 1/1:0,77:77:99:2690,220,0 1/1:0,74:74:99:2570,208,0 0/1:42,40:82:99:1112,0,1204 0/0:65,0:65:99:0,181,2294 1/1:0,61:61:99:2120,175,0 1/1:0,60:60:99:2023,165,0 0/1:43,37:80:99:1056,0,1294 1/1:1,80:81:99:2571,176,0 15 63351873 . T C 6247.67 . 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T C 1076.43 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.279;DP=4285;DS;Dels=0.00;FS=2.081;HRun=0;HaplotypeScore=3.2722;InbreedingCoeff=-0.0120;MQ=59.57;MQ0=0;MQRankSum=0.343;QD=15.83;ReadPosRankSum=-1.992 GT:AD:DP:GQ:PL 0/0:101,0:101:99:0,295,3435 0/0:80,0:80:99:0,232,2743 0/1:31,37:68:99:1123,0,804 0/0:124,0:124:99:0,364,4295 0/0:140,0:141:99:0,397,4836 0/0:119,0:119:99:0,340,4262 0/0:98,0:98:99:0,277,3407 0/0:82,0:82:99:0,241,2903 0/0:93,0:93:99:0,274,3219 0/0:81,0:81:99:0,238,2801 0/0:78,0:78:99:0,232,2742 0/0:75,0:75:99:0,217,2540 0/0:75,0:75:99:0,217,2525 0/0:83,0:83:99:0,235,2796 0/0:250,0:250:99:0,719,8418 0/0:66,0:66:99:0,196,2294 0/0:87,0:87:99:0,253,2971 0/0:75,0:75:99:0,211,2492 0/0:149,0:149:99:0,418,4977 0/0:173,0:173:99:0,487,5885 0/0:153,0:154:99:0,433,5192 0/0:103,0:103:99:0,295,3496 0/0:159,0:159:99:0,466,5566 0/0:93,0:93:99:0,265,3238 0/0:105,0:105:99:0,298,3595 0/0:84,0:84:99:0,238,2895 0/0:64,0:64:99:0,190,2234 0/0:74,0:74:99:0,205,2422 0/0:96,0:96:99:0,265,3156 0/0:103,0:103:99:0,295,3504 0/0:82,0:82:99:0,244,2894 0/0:159,0:159:99:0,418,5099 0/0:105,0:105:99:0,298,3538 0/0:84,0:84:99:0,247,2913 0/0:88,0:88:99:0,256,3048 0/0:105,0:105:99:0,292,3482 0/0:135,0:135:99:0,382,4580 0/0:93,0:93:99:0,271,3196 0/0:65,0:65:99:0,196,2305 0/0:86,0:86:99:0,253,2964 0/0:74,0:74:99:0,217,2546 0/0:75,0:75:99:0,220,2591 15 64275804 . A C 150.30 . AC=10;AF=0.119;AN=84;BaseQRankSum=-24.671;DP=2801;Dels=0.00;FS=973.766;HRun=2;HaplotypeScore=1.8004;InbreedingCoeff=-0.1596;MQ=58.19;MQ0=1;MQRankSum=6.061;QD=0.24;ReadPosRankSum=-14.230 GT:AD:DP:GQ:PL 0/0:30,15:45:10.33:0,10,864 0/0:40,21:62:37.65:0,38,1198 0/0:34,20:55:76.60:0,77,1136 0/0:68,56:125:1.74:0,2,2045 0/0:68,45:113:95.63:0,96,2175 0/0:46,30:77:54.49:0,54,1520 0/0:35,25:61:0.43:0,0,1013 0/0:50,25:75:99:0,132,1589 0/0:34,21:55:6.70:0,7,1002 0/1:21,16:39:10.53:11,0,665 0/0:27,11:39:18.25:0,18,854 0/0:37,18:56:57.80:0,58,1175 0/0:24,14:38:22.84:0,23,726 0/1:30,20:50:31.28:31,0,868 0/0:113,47:160:99:0,180,3344 0/0:49,20:69:21.16:0,21,1474 0/1:43,17:61:29.62:30,0,1137 0/0:41,19:60:88.41:0,88,1223 0/0:52,15:68:92.99:0,93,1546 0/0:95,39:135:99:0,236,2887 0/0:66,27:93:99:0,122,2002 0/0:42,24:66:23.76:0,24,1179 0/1:62,63:125:25.94:26,0,1933 0/0:27,40:67:6.25:0,6,864 0/0:52,32:84:63.90:0,64,1665 0/1:33,23:57:20.14:20,0,1023 0/0:19,15:34:2.96:0,3,573 0/1:40,24:64:65.78:66,0,1141 0/0:36,17:53:77.25:0,77,1140 0/0:28,10:38:78.20:0,78,887 0/0:40,9:50:92.65:0,93,1326 0/0:55,35:90:26.46:0,26,1461 0/1:22,27:49:32.03:32,0,613 0/1:32,22:54:24.67:25,0,948 0/0:32,16:48:33.60:0,34,916 0/1:26,18:44:13.13:13,0,704 0/1:48,28:76:26.18:26,0,1486 0/0:33,21:54:30.64:0,31,967 0/0:26,20:46:20.90:0,21,706 0/0:38,22:60:39.41:0,39,1226 0/0:33,17:50:89.74:0,90,1012 0/0:37,19:56:99:0,107,1173 15 64275864 . G C 43.04 . AC=3;AF=0.036;AN=84;BaseQRankSum=-8.242;DP=1240;Dels=0.00;FS=91.435;HRun=3;HaplotypeScore=2.6412;InbreedingCoeff=-0.0426;MQ=58.02;MQ0=0;MQRankSum=-1.133;QD=0.54;ReadPosRankSum=-4.576 GT:AD:DP:GQ:PL 0/0:21,4:25:48.11:0,48,554 0/0:23,3:26:48.08:0,48,529 0/0:21,4:25:30.03:0,30,309 0/0:47,8:55:90.20:0,90,1051 0/0:31,8:40:38.41:0,38,627 0/0:23,4:27:39.06:0,39,439 0/0:30,4:34:26.45:0,26,553 0/0:24,3:27:36.05:0,36,383 0/0:32,7:39:66.50:0,67,973 0/0:16,2:18:30.05:0,30,322 0/0:28,5:33:40.40:0,40,619 0/0:18,4:22:36.06:0,36,382 0/0:20,5:25:30.06:0,30,323 0/0:24,6:30:19.44:0,19,468 0/0:54,18:72:65.58:0,66,961 0/0:27,8:35:45.12:0,45,529 0/1:16,5:21:30.06:30,0,224 0/0:24,2:26:57.12:0,57,611 0/0:31,4:36:38.56:0,39,711 0/0:61,1:62:99:0,117,1360 0/1:27,10:38:51.26:51,0,503 0/0:34,5:39:53.39:0,53,750 0/0:29,10:40:33.44:0,33,631 0/0:14,2:16:36.08:0,36,440 0/0:23,5:28:60.15:0,60,722 0/0:33,1:34:57.13:0,57,653 0/0:15,3:18:11.40:0,11,330 0/0:21,6:27:3.79:0,4,348 0/0:18,4:22:33.07:0,33,368 0/0:21,1:22:48.11:0,48,528 0/0:18,3:22:24.05:0,24,265 0/0:27,1:28:54.15:0,54,647 0/0:23,1:24:45.08:0,45,489 0/0:16,1:17:24.06:0,24,281 0/0:21,2:23:18.39:0,18,439 0/0:24,7:31:20.38:0,20,398 0/0:17,2:19:42.10:0,42,490 0/0:20,3:24:26.46:0,26,555 0/0:21,2:23:42.07:0,42,435 0/0:20,1:21:30.05:0,30,318 0/0:22,3:25:17.65:0,18,481 0/1:17,4:21:36.94:37,0,313 15 64275867 . C T 1496.80 . AC=3;AF=0.036;AN=84;BaseQRankSum=2.818;DP=1193;Dels=0.00;FS=41.438;HRun=0;HaplotypeScore=2.7034;InbreedingCoeff=-0.0370;MQ=57.79;MQ0=0;MQRankSum=0.131;QD=11.97;ReadPosRankSum=5.164 GT:AD:DP:GQ:PL 0/0:27,0:27:66.16:0,66,724 0/0:26,0:26:63.15:0,63,692 0/0:23,0:23:48.12:0,48,540 0/0:47,0:48:99:0,102,1122 0/0:43,0:43:96.23:0,96,1078 0/0:23,0:23:60.11:0,60,669 0/0:31,0:31:72.14:0,72,815 0/0:26,0:28:51.12:0,51,580 0/1:15,22:37:99:461,0,297 0/0:19,0:19:45.09:0,45,484 0/1:15,13:28:99:339,0,299 0/0:20,0:20:51.14:0,51,587 0/0:25,0:26:57.14:0,57,630 0/0:27,0:27:60.14:0,60,649 0/0:67,0:67:99:0,120,1323 0/0:36,0:36:63.13:0,63,689 0/0:25,0:25:42.09:0,42,450 0/0:24,0:24:63.13:0,63,661 0/0:35,0:35:90.18:0,90,989 0/1:24,35:60:99:772,0,451 0/0:35,0:35:75.20:0,75,869 0/0:36,0:36:90.21:0,90,992 0/0:38,0:39:63.18:0,63,744 0/0:15,0:15:42.10:0,42,489 0/0:24,0:24:60.14:0,60,677 0/0:32,0:33:75.19:0,75,857 0/0:17,0:17:45.11:0,45,494 0/0:24,0:25:45.10:0,45,505 0/0:20,0:20:48.12:0,48,523 0/0:22,0:22:54.13:0,54,603 0/0:19,0:19:33.06:0,33,354 0/0:29,0:29:69.10:0,69,727 0/0:25,0:25:60.13:0,60,665 0/0:18,0:18:39.09:0,39,419 0/0:24,0:24:57.12:0,57,623 0/0:28,0:28:66.12:0,66,713 0/0:18,0:19:45.13:0,45,513 0/0:24,0:25:54.11:0,54,589 0/0:21,0:21:54.07:0,54,574 0/0:22,0:22:51.07:0,51,539 0/0:23,0:23:54.12:0,54,597 0/0:21,0:21:51.12:0,51,555 15 64418397 . G A 60812.86 . AC=69;AF=0.821;AN=84;BaseQRankSum=-15.764;DP=2593;DS;Dels=0.00;FS=3.445;HRun=0;HaplotypeScore=1.6442;InbreedingCoeff=-0.0551;MQ=59.49;MQ0=0;MQRankSum=0.034;QD=24.75;ReadPosRankSum=1.788 GT:AD:DP:GQ:PL 0/1:27,16:44:99:395,0,785 1/1:1,44:45:99:1238,111,0 1/1:0,36:39:99:1143,105,0 0/1:52,52:105:99:1269,0,1525 1/1:0,89:90:99:2754,244,0 0/1:42,49:92:99:1254,0,1087 1/1:1,105:106:99:3024,265,0 0/1:36,38:74:99:926,0,914 0/1:26,28:54:99:754,0,688 1/1:0,50:50:99:1606,147,0 0/1:21,15:36:99:316,0,575 1/1:0,44:45:99:1476,129,0 1/1:0,32:33:84.19:960,84,0 1/1:0,65:66:99:2179,190,0 1/1:0,147:153:99:4388,391,0 1/1:0,38:38:99:1254,111,0 1/1:0,55:56:99:1776,156,0 1/1:0,31:31:93.24:1043,93,0 1/1:0,69:69:99:2149,192,0 0/1:20,40:61:99:1087,0,476 1/1:1,72:74:99:2103,186,0 1/1:0,38:38:96.25:1073,96,0 0/0:135,0:136:99:0,364,4694 1/1:0,76:76:99:2224,198,0 1/1:0,107:107:99:3299,289,0 1/1:1,71:74:99:2113,170,0 1/1:0,38:38:96.26:1099,96,0 1/1:0,43:43:99:1354,120,0 1/1:0,44:45:99:1264,114,0 1/1:1,50:51:99:1603,141,0 1/1:1,41:42:99:1338,117,0 1/1:0,65:67:99:1993,171,0 0/1:23,28:51:99:607,0,576 0/1:33,23:56:99:557,0,899 0/1:13,28:41:99:817,0,355 1/1:0,63:63:99:1866,159,0 0/1:28,33:61:99:754,0,837 0/1:26,20:46:99:491,0,726 0/1:24,17:43:99:451,0,656 1/1:0,59:59:99:1859,165,0 1/1:1,44:45:99:1320,117,0 1/1:0,50:50:99:1640,144,0 15 64508763 . G A 15653.46 . AC=19;AF=0.226;AN=84;BaseQRankSum=-16.855;DP=2327;Dels=0.00;FS=0.397;HRun=1;HaplotypeScore=1.0985;InbreedingCoeff=-0.0202;MQ=59.16;MQ0=0;MQRankSum=1.247;QD=16.62;ReadPosRankSum=1.288 GT:AD:DP:GQ:PL 0/1:26,24:50:99:738,0,784 0/0:44,0:44:99:0,126,1594 0/0:44,0:44:99:0,111,1449 0/1:45,25:70:99:694,0,1434 0/0:97,0:97:99:0,238,3275 0/1:35,26:61:99:737,0,925 0/0:56,0:56:99:0,147,2018 0/1:25,36:61:99:1039,0,785 0/1:30,29:59:99:816,0,937 0/0:39,0:39:99:0,114,1409 0/1:24,31:55:99:844,0,678 0/1:23,22:45:99:674,0,707 0/0:48,1:49:99:0,101,1701 0/1:24,24:48:99:697,0,725 0/0:167,0:167:99:0,430,5591 0/0:38,0:38:99:0,108,1366 0/0:45,0:45:99:0,126,1621 0/0:42,2:44:56.31:0,56,1505 0/0:75,0:76:99:0,211,2688 0/1:25,35:60:99:946,0,740 0/0:62,0:62:99:0,163,2099 0/0:48,0:48:99:0,138,1758 1/1:1,85:86:99:2945,229,0 0/0:46,0:46:99:0,111,1541 0/0:66,0:66:99:0,172,2344 0/0:44,0:44:99:0,123,1690 0/0:29,1:30:84.27:0,84,1070 0/0:46,0:46:99:0,132,1682 0/0:36,0:36:99:0,105,1335 0/1:26,24:50:99:695,0,743 0/0:51,0:51:99:0,147,1867 0/0:64,0:64:99:0,160,2075 1/1:1,63:64:99:2074,134,0 0/1:27,18:45:99:525,0,834 0/1:31,16:47:99:462,0,961 0/0:47,0:47:99:0,132,1675 0/1:35,20:55:99:586,0,1005 0/1:20,20:40:99:605,0,572 0/1:26,20:46:99:577,0,797 0/0:47,0:47:99:0,126,1631 0/0:51,0:51:99:0,132,1709 0/0:48,0:48:99:0,132,1710 15 65113687 . A G 620.59 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.465;DP=3147;Dels=0.00;FS=1.911;HRun=0;HaplotypeScore=2.1651;InbreedingCoeff=-0.0120;MQ=58.50;MQ0=0;MQRankSum=0.994;QD=12.17;ReadPosRankSum=0.774 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,141,1625 0/0:43,0:44:99:0,123,1425 0/0:40,0:40:99:0,114,1301 0/0:187,0:187:99:0,487,5799 0/0:196,1:197:99:0,520,6191 0/0:125,0:126:99:0,334,3996 0/0:103,0:103:99:0,274,3237 0/0:128,0:128:99:0,325,3861 0/0:40,0:40:99:0,111,1308 0/0:45,0:45:99:0,123,1434 0/0:41,0:41:99:0,111,1291 0/0:32,0:32:96.24:0,96,1095 0/0:34,0:34:93.25:0,93,1073 0/1:25,26:51:99:667,0,718 0/0:146,0:146:99:0,397,4598 0/0:50,0:50:99:0,135,1587 0/0:44,0:44:99:0,123,1450 0/0:44,0:44:99:0,126,1468 0/0:91,0:92:99:0,250,2943 0/0:88,0:89:99:0,244,2861 0/0:96,0:96:99:0,268,3157 0/0:65,0:66:99:0,186,2095 0/0:207,0:207:99:0,557,6637 0/0:103,0:103:99:0,280,3360 0/0:135,0:135:99:0,349,4168 0/0:84,0:84:99:0,214,2549 0/0:53,0:53:99:0,153,1710 0/0:42,0:43:99:0,123,1410 0/0:45,0:45:99:0,123,1443 0/0:45,0:45:99:0,114,1350 0/0:45,0:46:99:0,129,1473 0/0:101,0:104:99:0,271,3186 0/0:84,0:84:99:0,223,2620 0/0:48,0:48:99:0,132,1550 0/0:45,0:45:99:0,126,1486 0/0:39,0:39:99:0,114,1303 0/0:101,0:102:99:0,259,3042 0/0:36,0:37:99:0,105,1200 0/0:61,0:61:99:0,162,1899 0/0:42,0:42:99:0,123,1390 0/0:30,0:30:90.25:0,90,1027 0/0:47,1:48:99:0,135,1579 15 65153690 . G A 785.12 . 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A G 71064.30 . AC=38;AF=0.452;AN=84;BaseQRankSum=35.875;DP=4594;DS;Dels=0.00;FS=13.514;HRun=0;HaplotypeScore=2.0606;InbreedingCoeff=0.0389;MQ=59.29;MQ0=0;MQRankSum=-0.681;QD=21.74;ReadPosRankSum=3.192 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2887,232,0 1/1:0,81:81:99:3011,241,0 0/1:41,39:80:99:1199,0,1191 1/1:0,174:174:99:6798,518,0 1/1:2,159:161:99:6273,439,0 0/0:170,0:170:99:0,509,6277 0/1:78,63:141:99:2084,0,2390 0/0:160,0:160:99:0,463,5590 0/1:36,41:77:99:1215,0,992 0/0:66,0:66:99:0,193,2276 1/1:0,76:77:99:2816,226,0 0/1:40,42:82:99:1313,0,1152 0/0:63,0:63:99:0,180,2119 0/1:41,41:82:99:1231,0,1186 0/1:76,79:157:99:2349,0,2042 0/1:35,38:73:99:1139,0,916 0/0:99,1:100:99:0,240,3281 0/1:43,32:75:99:967,0,1264 0/1:83,88:171:99:2527,0,2325 0/0:171,0:171:99:0,463,5597 0/1:91,86:179:99:2496,0,2662 0/1:46,45:91:99:1381,0,1298 0/1:101,91:192:99:2968,0,3056 0/1:82,82:165:99:2749,0,2498 1/1:1,136:137:99:5199,359,0 0/1:70,72:142:99:2356,0,2063 0/0:66,0:66:99:0,187,2205 0/0:87,0:87:99:0,250,3030 0/1:38,44:82:99:1299,0,1045 0/1:35,30:65:99:802,0,997 0/0:77,0:77:99:0,214,2591 0/1:85,91:176:99:2687,0,2428 0/1:49,58:107:99:1801,0,1373 0/0:72,0:72:99:0,202,2435 0/0:101,0:101:99:0,292,3498 0/0:102,0:102:99:0,289,3456 1/1:0,129:130:99:4451,361,0 0/1:40,31:71:99:917,0,1145 1/1:0,77:77:99:2850,229,0 0/1:39,22:61:99:668,0,1115 1/1:5,76:81:99:2630,116,0 0/0:90,0:90:99:0,268,3173 15 65321780 . A T 5.77 . AC=2;AF=0.032;AN=62;BaseQRankSum=-1.295;DP=80;Dels=0.00;FS=5.788;HRun=0;HaplotypeScore=0.2110;InbreedingCoeff=0.0403;MQ=58.42;MQ0=0;MQRankSum=0.827;QD=1.92;ReadPosRankSum=-0.328 GT:AD:DP:GQ:PL ./. 0/0:5,0:5:12.04:0,12,155 0/0:2,0:2:3.01:0,3,38 0/0:4,0:4:12.04:0,12,144 ./. ./. ./. 0/0:1,0:1:3:0,3,29 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.03:0,9,106 0/0:2,0:2:6.02:0,6,72 0/0:1,0:1:3.01:0,3,38 0/0:2,0:2:6.02:0,6,74 0/0:3,0:3:9.03:0,9,111 0/0:2,0:2:6.02:0,6,74 0/0:3,0:3:6.02:0,6,84 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:6.02:0,6,83 0/0:5,0:5:15.05:0,15,180 0/0:3,0:3:9.01:0,9,96 0/0:4,0:4:12.04:0,12,150 0/0:2,0:2:6.02:0,6,70 ./. ./. 0/0:2,0:2:3.01:0,3,45 0/0:1,0:1:3.01:0,3,36 ./. 0/1:0,1:1:1.76:34,3,0 ./. 0/0:2,0:2:6.02:0,6,76 0/0:2,0:2:6.02:0,6,69 ./. 0/0:3,0:3:6.02:0,6,81 0/0:4,0:4:12.04:0,12,146 0/1:1,1:2:30.11:30,0,33 0/0:5,0:5:15.05:0,15,185 0/0:2,0:2:6.02:0,6,73 ./. 0/0:4,0:4:12.04:0,12,145 ./. 0/0:4,0:4:12.03:0,12,140 15 65321938 . A G 37.55 . AC=2;AF=0.030;AN=66;BaseQRankSum=0.148;DP=88;Dels=0.00;FS=6.157;HRun=0;HaplotypeScore=0.0252;InbreedingCoeff=0.1683;MQ=57.52;MQ0=0;MQRankSum=-1.482;QD=12.52;ReadPosRankSum=-0.222 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,32 0/0:5,0:5:12.04:0,12,143 ./. 0/0:3,0:3:9.02:0,9,97 0/0:2,0:2:3.01:0,3,45 ./. ./. ./. 0/0:4,0:4:12.03:0,12,139 ./. 0/0:1,0:1:3.01:0,3,32 0/0:5,0:5:9.03:0,9,125 0/0:1,0:1:3.01:0,3,34 0/0:2,0:2:3.01:0,3,33 0/0:2,0:2:6.01:0,6,64 0/0:2,0:2:6.02:0,6,76 0/1:0,2:2:0.97:74,6,0 ./. 0/0:1,0:2:3.01:0,3,37 0/0:6,0:6:18.05:0,18,208 0/0:4,0:4:12.04:0,12,139 0/0:4,0:4:9.03:0,9,116 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,38 ./. 0/0:1,0:1:3.01:0,3,39 0/1:0,1:1:1.76:30,3,0 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,33 0/0:1,0:1:3.01:0,3,35 0/0:5,0:5:15.03:0,15,169 0/0:2,0:2:6.02:0,6,75 0/0:8,0:9:24.01:0,24,240 0/0:3,0:3:9.03:0,9,101 0/0:1,0:1:3.01:0,3,31 0/0:3,0:3:6.02:0,6,81 0/0:2,0:2:6.02:0,6,72 0/0:3,0:3:9.03:0,9,105 0/0:3,0:3:6.01:0,6,61 0/0:2,0:2:6:0,6,60 ./. ./. 15 65684491 . C T 1174.70 . 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A G 7793.24 . AC=13;AF=0.155;AN=84;BaseQRankSum=2.948;DP=2348;Dels=0.00;FS=1.313;HRun=1;HaplotypeScore=1.6802;InbreedingCoeff=0.1809;MQ=58.51;MQ0=0;MQRankSum=-0.507;QD=15.02;ReadPosRankSum=1.612 GT:AD:DP:GQ:PL 0/0:38,1:39:99:0,105,1290 0/0:23,0:23:63.18:0,63,771 0/0:33,0:33:90.29:0,90,1150 0/0:144,0:144:99:0,382,4820 0/0:101,0:101:99:0,283,3606 0/0:79,0:79:99:0,214,2789 0/0:63,0:63:99:0,166,2154 0/0:83,1:84:99:0,192,2814 0/0:44,0:44:99:0,123,1539 0/0:39,0:39:99:0,108,1321 0/0:32,0:32:90.28:0,90,1104 0/0:39,0:39:99:0,105,1311 0/0:30,0:30:81.23:0,81,988 0/0:39,0:39:99:0,111,1374 0/0:159,0:159:99:0,403,5099 0/0:27,0:27:81.24:0,81,991 0/0:38,0:38:99:0,105,1305 0/0:52,1:53:99:0,141,1779 0/1:41,29:70:99:852,0,1144 0/1:48,32:80:99:829,0,1448 0/1:31,32:63:99:966,0,919 1/1:0,37:37:99:1244,99,0 0/0:156,1:157:99:0,365,5149 0/0:67,0:67:99:0,187,2392 0/0:91,0:91:99:0,247,3123 0/0:73,0:73:99:0,190,2487 0/0:35,1:36:59.28:0,59,1153 0/0:37,0:37:96.29:0,96,1208 0/0:34,0:34:84.26:0,84,1066 0/0:36,0:36:99:0,99,1227 0/0:34,0:34:96.30:0,96,1214 0/0:94,0:94:99:0,238,3024 0/1:22,18:41:99:528,0,617 0/1:15,15:30:99:446,0,441 0/0:45,0:45:99:0,129,1597 1/1:0,38:38:99:1265,99,0 0/1:40,23:65:99:658,0,1172 0/1:22,16:38:99:409,0,587 0/0:31,0:31:87.25:0,87,1056 0/1:15,10:25:99:246,0,494 0/1:19,13:32:99:352,0,595 0/0:28,0:28:78.21:0,78,937 15 65685772 . A C 104.70 . 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T C 826.91 . 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G A 122.94 . AC=9;AF=0.281;AN=32;BaseQRankSum=-2.396;DP=22;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0361;InbreedingCoeff=0.3540;MQ=59.15;MQ0=0;MQRankSum=-0.258;QD=20.49;ReadPosRankSum=0.922 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,76 ./. ./. 0/0:1,0:1:3.01:0,3,39 ./. 1/1:0,1:1:3.01:34,3,0 ./. 0/0:2,0:2:3.01:0,3,45 0/0:1,0:1:3.01:0,3,38 0/0:1,0:1:3.01:0,3,37 ./. 0/0:1,0:1:3.01:0,3,34 ./. ./. ./. ./. ./. 0/0:3,0:3:6.02:0,6,79 ./. 0/0:1,0:1:3:0,3,29 ./. 1/1:0,2:2:6.02:66,6,0 0/0:1,0:1:3.01:0,3,39 ./. ./. 0/1:0,1:1:1.76:30,3,0 ./. ./. ./. ./. ./. 0/0:2,0:2:6.02:0,6,77 ./. 1/1:0,1:1:3.01:37,3,0 0/0:1,0:1:3.01:0,3,38 1/1:0,1:1:3.01:33,3,0 ./. ./. ./. ./. ./. ./. 15 65756157 . T C 1025.88 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.695;DP=4420;DS;Dels=0.00;FS=2.741;HRun=0;HaplotypeScore=2.5693;InbreedingCoeff=-0.0120;MQ=59.44;MQ0=0;MQRankSum=0.147;QD=12.07;ReadPosRankSum=0.574 GT:AD:DP:GQ:PL 0/0:78,0:78:99:0,208,2535 0/0:65,0:65:99:0,169,2075 0/0:87,0:87:99:0,220,2752 0/0:196,0:196:99:0,503,6314 0/0:205,0:205:99:0,527,6695 0/0:174,0:174:99:0,430,5613 0/0:147,0:147:99:0,367,4697 0/0:116,0:116:99:0,295,3736 0/0:79,0:79:99:0,223,2680 0/0:63,0:63:99:0,172,2091 0/0:95,0:95:99:0,262,3195 0/0:75,0:75:99:0,211,2558 0/0:76,0:76:99:0,199,2448 0/0:59,0:59:99:0,159,1972 0/0:248,2:250:99:0,603,7776 0/0:59,0:59:99:0,172,2069 0/0:86,0:86:99:0,229,2839 0/0:82,0:82:99:0,226,2747 0/0:132,0:134:99:0,337,4212 0/0:128,0:128:99:0,331,4160 0/0:112,0:112:99:0,301,3704 0/0:85,0:85:99:0,223,2729 0/0:204,0:204:99:0,509,6449 0/0:153,0:153:99:0,400,5100 0/0:162,0:162:99:0,376,4879 0/0:138,0:138:99:0,337,4320 0/0:62,0:63:99:0,172,2087 0/0:109,0:109:99:0,295,3628 0/0:51,0:53:99:0,150,1814 0/0:68,0:68:99:0,184,2230 0/0:58,0:58:99:0,169,2031 0/0:117,0:117:99:0,310,3853 0/0:77,0:77:99:0,205,2520 0/0:75,0:75:99:0,211,2572 0/0:78,0:78:99:0,205,2539 0/0:89,0:89:99:0,253,3055 0/0:136,0:136:99:0,355,4371 0/0:93,0:93:99:0,259,3134 0/0:63,0:63:99:0,175,2118 0/0:80,0:80:99:0,217,2648 0/0:67,0:67:99:0,184,2244 0/1:41,44:85:99:1072,0,1209 15 65946240 . G T 62.87 . AC=1;AF=0.012;AN=84;BaseQRankSum=-27.301;DP=5293;DS;Dels=0.00;FS=437.822;HRun=4;HaplotypeScore=4.5603;InbreedingCoeff=-0.0125;MQ=58.97;MQ0=0;MQRankSum=-3.573;QD=0.37;ReadPosRankSum=-14.139 GT:AD:DP:GQ:PL 0/0:82,7:89:99:0,130,2332 0/0:88,13:101:63.74:0,64,2394 0/0:65,6:71:99:0,137,1901 0/0:208,17:226:99:0,374,6297 0/0:190,24:214:99:0,381,5876 0/0:161,16:177:99:0,312,4649 0/0:156,9:165:99:0,389,5049 0/0:151,15:166:99:0,335,4571 0/0:81,25:106:53.54:0,54,2258 0/0:79,13:92:99:0,148,2467 0/0:88,15:103:99:0,141,2622 0/0:83,13:96:99:0,128,2336 0/0:74,6:80:99:0,183,2307 0/0:69,9:78:99:0,163,2074 0/0:194,47:243:99:0,148,5148 0/0:68,8:76:97.57:0,98,1955 0/0:86,15:101:99:0,144,2549 0/0:71,10:81:13.97:0,14,1922 0/1:131,38:169:99:109,0,3272 0/0:179,9:188:99:0,362,5345 0/0:159,39:199:82.81:0,83,4369 0/0:123,8:131:99:0,272,3754 0/0:193,18:212:99:0,381,6066 0/0:154,9:163:99:0,375,4852 0/0:154,11:165:99:0,345,5026 0/0:156,14:170:99:0,368,4952 0/0:56,9:65:73.51:0,74,1573 0/0:79,6:85:99:0,181,2362 0/0:72,6:78:99:0,108,1997 0/0:84,11:95:99:0,158,2535 0/0:82,8:90:99:0,160,2171 0/0:174,13:187:99:0,448,5255 0/0:115,11:126:99:0,241,3451 0/0:87,10:97:99:0,193,2662 0/0:78,11:89:80.09:0,80,2141 0/0:91,13:104:99:0,197,2762 0/0:140,27:167:65.14:0,65,3687 0/0:77,11:88:99:0,171,2285 0/0:81,11:92:99:0,144,2172 0/0:72,8:81:99:0,171,1960 0/0:67,7:74:99:0,157,2036 0/0:92,21:113:52.12:0,52,2564 15 65946388 . C T 1144.20 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.280;DP=4315;DS;Dels=0.00;FS=2.949;HRun=1;HaplotypeScore=1.4137;InbreedingCoeff=-0.0120;MQ=59.30;MQ0=0;MQRankSum=0.311;QD=13.46;ReadPosRankSum=-1.440 GT:AD:DP:GQ:PL 0/0:63,0:63:99:0,180,2014 0/0:74,0:74:99:0,211,2449 0/0:72,0:72:99:0,201,2333 0/0:150,0:151:99:0,421,5108 0/0:135,0:135:99:0,391,4771 0/0:157,0:157:99:0,460,5539 0/0:115,1:116:99:0,297,3962 0/0:123,0:123:99:0,346,4210 0/0:84,0:84:99:0,238,2748 0/0:63,0:63:99:0,177,2020 0/1:44,41:85:99:1190,0,1145 0/0:100,0:100:99:0,277,3127 0/0:74,0:74:99:0,201,2269 0/0:71,1:72:99:0,195,2406 0/0:250,0:250:99:0,686,7827 0/0:62,0:62:99:0,183,2063 0/0:98,0:98:99:0,277,3183 0/0:89,0:89:99:0,250,2832 0/0:160,0:160:99:0,442,5004 0/0:133,0:133:99:0,376,4338 0/0:148,0:148:99:0,409,4690 0/0:99,0:99:99:0,280,3158 0/0:143,0:144:99:0,415,5044 0/0:124,0:124:99:0,343,4129 0/0:117,0:117:99:0,343,4150 0/0:117,0:118:99:0,322,3942 0/0:62,0:62:99:0,171,1994 0/0:94,0:94:99:0,271,3107 0/0:74,0:74:99:0,208,2363 0/0:77,0:77:99:0,217,2474 0/0:65,0:65:99:0,187,2166 0/0:137,0:140:99:0,391,4460 0/0:98,0:98:99:0,280,3191 0/0:100,0:100:99:0,289,3337 0/0:79,0:79:99:0,229,2571 0/0:78,0:78:99:0,214,2406 0/0:141,0:142:99:0,382,4334 0/0:82,0:82:99:0,232,2658 0/0:81,0:81:99:0,241,2681 0/0:78,0:78:99:0,223,2488 0/0:85,0:85:99:0,241,2797 0/0:69,0:69:99:0,202,2290 15 66170157 . A T 1603.17 . AC=1;AF=0.012;AN=84;BaseQRankSum=9.285;DP=4763;DS;Dels=0.00;FS=6.730;HRun=1;HaplotypeScore=1.1928;InbreedingCoeff=-0.0120;MQ=59.58;MQ0=0;MQRankSum=0.194;QD=14.44;ReadPosRankSum=1.438 GT:AD:DP:GQ:PL 0/0:84,0:84:99:0,238,2882 0/0:91,0:91:99:0,250,3050 0/0:88,0:88:99:0,250,3045 0/0:193,0:193:99:0,533,6604 0/0:215,0:216:99:0,602,7531 0/0:190,0:190:99:0,515,6618 0/0:115,0:115:99:0,334,4162 0/0:168,0:168:99:0,472,5907 0/0:109,0:110:99:0,301,3677 0/0:88,0:88:99:0,250,3010 0/0:89,0:89:99:0,253,3089 0/0:101,0:101:99:0,292,3560 0/0:92,0:92:99:0,253,3097 0/0:85,0:85:99:0,247,2996 0/0:250,0:250:99:0,698,8486 0/0:90,0:90:99:0,262,3181 0/0:99,0:99:99:0,283,3447 0/0:88,0:88:99:0,256,3124 0/0:108,0:108:99:0,292,3576 0/0:115,0:116:99:0,319,3955 0/0:112,0:112:99:0,313,3886 0/0:69,0:69:99:0,193,2374 0/0:187,0:187:99:0,515,6438 0/0:161,0:162:99:0,448,5646 0/0:174,0:174:99:0,479,6025 0/0:122,0:122:99:0,346,4259 0/0:91,0:91:99:0,265,3225 0/0:86,0:86:99:0,250,3044 0/0:79,0:79:99:0,220,2663 0/0:87,0:87:99:0,250,3062 0/0:81,0:81:99:0,232,2834 0/1:59,52:111:99:1649,0,1690 0/0:66,0:66:99:0,193,2324 0/0:101,0:101:99:0,292,3582 0/0:113,0:113:99:0,313,3884 0/0:108,0:108:99:0,313,3833 0/0:88,0:88:99:0,244,3015 0/0:98,0:98:99:0,268,3281 0/0:98,0:99:99:0,283,3435 0/0:78,0:78:99:0,226,2741 0/0:99,0:99:99:0,280,3402 0/0:91,0:91:99:0,256,3160 15 66206115 . T G 31.76 . AC=6;AF=0.071;AN=84;BaseQRankSum=-14.759;DP=872;Dels=0.00;FS=115.003;HRun=2;HaplotypeScore=0.5826;InbreedingCoeff=-0.1300;MQ=57.96;MQ0=0;MQRankSum=0.713;QD=0.21;ReadPosRankSum=-7.490 GT:AD:DP:GQ:PL 0/0:13,9:22:10.45:0,10,351 0/0:15,5:20:45.11:0,45,509 0/0:10,4:14:30.08:0,30,345 0/1:21,19:41:42.32:42,0,564 0/0:16,15:31:22.09:0,22,443 0/0:15,7:23:15.44:0,15,441 0/1:6,6:12:15.38:15,0,156 0/0:19,9:28:51.13:0,51,596 0/0:12,8:20:1.72:0,2,332 0/0:10,1:11:1.55:0,2,322 0/0:15,6:21:45.13:0,45,528 0/0:10,8:18:2.77:1,0,292 0/0:8,3:12:24.06:0,24,275 0/1:4,5:9:15.57:16,0,113 0/1:35,21:56:10.76:11,0,948 0/0:16,5:21:42.12:0,42,492 0/0:9,6:15:0.75:7,0,254 0/0:13,3:16:36.05:0,36,388 0/0:21,8:29:23.73:0,24,613 0/0:21,9:30:56.95:0,57,641 0/0:20,10:30:29.50:0,29,622 0/0:19,8:27:45.03:0,45,451 0/0:17,14:31:10.45:0,10,382 0/0:8,4:12:21.04:0,21,232 0/1:8,9:17:9.54:10,0,189 0/0:13,10:23:36.08:0,36,404 0/0:7,9:16:18.04:0,18,203 0/0:8,5:13:0.70:8,0,179 0/0:10,8:18:27.06:0,27,301 0/0:9,6:15:24.06:0,24,263 0/0:9,4:14:24.07:0,24,283 0/0:23,3:26:66.15:0,66,743 0/0:15,8:23:41.60:0,42,437 0/0:8,3:11:2.70:1,0,175 0/0:10,5:15:27.08:0,27,322 0/0:15,4:19:25.41:0,25,477 0/0:21,8:29:56.93:0,57,618 0/0:13,4:17:11.44:0,11,380 0/1:11,6:17:29.60:30,0,326 0/0:11,6:17:27.08:0,27,321 0/0:7,8:15:20.85:0,21,220 0/0:15,2:17:45.12:0,45,514 15 66206204 . G A 306.58 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.013;DP=1985;Dels=0.00;FS=2.334;HRun=1;HaplotypeScore=1.0262;InbreedingCoeff=-0.0121;MQ=58.92;MQ0=0;MQRankSum=0.684;QD=8.52;ReadPosRankSum=-0.681 GT:AD:DP:GQ:PL 0/0:33,0:33:93.29:0,93,1167 0/0:38,0:38:99:0,105,1322 0/0:31,0:31:84.27:0,84,1076 0/0:76,0:76:99:0,214,2834 0/0:65,0:65:99:0,178,2417 0/0:42,0:42:99:0,111,1488 0/0:45,0:45:99:0,123,1662 0/0:57,0:57:99:0,159,2090 0/0:31,0:31:87.28:0,87,1106 0/0:28,0:28:75.24:0,75,952 0/0:39,0:39:99:0,102,1297 0/0:46,0:46:99:0,129,1633 0/0:38,0:38:96.30:0,96,1247 0/0:36,0:36:93.30:0,93,1217 0/0:137,1:138:99:0,355,4575 0/1:23,13:36:99:353,0,657 0/0:27,0:27:72.23:0,72,914 0/0:34,0:34:99:0,99,1254 0/0:63,0:63:99:0,166,2113 0/0:80,0:80:99:0,205,2617 0/0:74,0:74:99:0,196,2463 0/0:63,0:63:99:0,153,1986 0/0:83,0:83:99:0,226,3085 0/0:29,0:29:81.27:0,81,1109 0/0:44,0:44:99:0,117,1567 0/0:33,0:33:84.28:0,84,1151 0/0:46,0:46:99:0,120,1544 0/0:47,0:47:99:0,129,1621 0/0:35,0:35:93.29:0,93,1177 0/0:40,0:40:99:0,99,1246 0/0:20,0:20:57.18:0,57,715 0/0:69,0:69:99:0,175,2248 0/0:57,0:57:99:0,144,1863 0/0:28,0:28:78.24:0,78,968 0/0:38,0:38:99:0,108,1366 0/0:34,0:34:90.28:0,90,1133 0/0:65,0:65:99:0,172,2139 0/0:40,0:40:99:0,108,1334 0/0:48,0:48:99:0,123,1592 0/0:47,0:47:99:0,129,1651 0/0:25,1:26:30.08:0,30,781 0/0:36,0:36:99:0,99,1268 15 66257303 . C A 7.61 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.121;DP=264;Dels=0.00;FS=2.876;HRun=0;HaplotypeScore=0.1256;InbreedingCoeff=-0.0441;MQ=59.06;MQ0=0;MQRankSum=1.824;QD=1.52;ReadPosRankSum=2.219 GT:AD:DP:GQ:PL 0/0:5,0:5:12.04:0,12,150 0/0:3,0:3:9.03:0,9,114 0/0:6,0:6:18.05:0,18,212 0/0:15,0:15:36.11:0,36,466 0/0:10,0:10:24.08:0,24,327 0/0:8,0:8:18.04:0,18,219 0/0:10,0:10:27.09:0,27,360 0/0:7,0:7:21.07:0,21,275 0/0:6,0:6:15.05:0,15,191 0/0:1,0:1:3.01:0,3,39 0/0:8,0:8:24.07:0,24,282 0/0:5,0:5:15.05:0,15,187 0/0:5,0:5:9.03:0,9,109 0/0:7,0:7:18.06:0,18,234 0/0:19,0:20:51.12:0,51,587 0/0:8,0:8:21.06:0,21,260 0/0:7,0:7:21.02:0,21,238 0/0:2,0:2:6.02:0,6,78 0/0:7,0:7:15.04:0,15,173 0/0:6,0:6:12.02:0,12,128 0/0:7,0:7:18.05:0,18,223 0/0:7,0:7:18.05:0,18,217 0/0:11,0:11:27.08:0,27,348 0/0:3,0:3:9.03:0,9,109 0/0:4,0:4:12.04:0,12,154 0/0:3,0:3:9.03:0,9,117 0/0:4,0:4:12.02:0,12,137 0/0:6,0:6:15.04:0,15,190 0/0:8,0:8:21.06:0,21,261 0/0:4,0:4:12.04:0,12,153 0/0:1,0:1:3.01:0,3,37 0/0:10,0:10:24.06:0,24,292 0/0:8,0:8:21.06:0,21,250 0/0:9,0:9:24.04:0,24,277 0/0:6,0:6:18.05:0,18,209 0/0:6,0:6:18.05:0,18,222 0/1:3,2:5:52.64:53,0,91 0/0:6,0:6:15.04:0,15,181 0/0:3,0:3:9.03:0,9,115 0/0:3,0:3:9.03:0,9,114 0/0:1,0:1:3.01:0,3,30 0/0:3,0:3:9.02:0,9,103 15 66257408 . T C 8290.71 . AC=84;AF=1.000;AN=84;DP=280;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2827;InbreedingCoeff=-0.0274;MQ=58.52;MQ0=0;QD=29.61 GT:AD:DP:GQ:PL 1/1:0,8:8:18.04:185,18,0 1/1:0,4:4:9.02:99,9,0 1/1:0,2:2:6.01:60,6,0 1/1:0,8:8:24.04:260,24,0 1/1:0,8:8:21.06:262,21,0 1/1:0,5:5:12.04:153,12,0 1/1:0,5:5:9.01:92,9,0 1/1:0,7:7:18.04:209,18,0 1/1:0,7:7:18.04:191,18,0 1/1:0,3:3:9.02:94,9,0 1/1:0,4:4:12.03:136,12,0 1/1:0,5:5:12.03:137,12,0 1/1:0,6:6:18.04:191,18,0 1/1:0,11:11:27.08:310,27,0 1/1:0,28:28:66.16:725,66,0 1/1:0,8:8:24.07:272,24,0 1/1:0,7:7:18.05:203,18,0 1/1:0,4:4:12.03:140,12,0 1/1:0,12:12:36.10:410,36,0 1/1:0,8:8:24.06:265,24,0 1/1:0,8:8:24.04:259,24,0 1/1:0,8:8:24.06:256,24,0 1/1:0,15:15:36.11:446,36,0 1/1:0,5:5:12.01:126,12,0 1/1:0,1:1:3.01:41,3,0 1/1:0,4:4:9.02:99,9,0 1/1:0,6:6:18.05:203,18,0 1/1:0,5:5:15.01:149,15,0 1/1:0,4:4:12.03:139,12,0 1/1:0,6:6:18.05:215,18,0 1/1:0,5:5:15.04:159,15,0 1/1:0,4:4:12.02:121,12,0 1/1:0,2:2:6.01:61,6,0 1/1:0,9:9:24.06:271,24,0 1/1:0,4:4:12.03:138,12,0 1/1:0,8:8:21.06:248,21,0 1/1:0,4:4:12.02:125,12,0 1/1:0,9:9:24.07:280,24,0 1/1:0,6:6:12.04:145,12,0 1/1:0,5:5:15.04:168,15,0 1/1:0,7:7:15.04:179,15,0 1/1:0,5:5:6.02:70,6,0 15 66274690 . T C 2398.46 . AC=62;AF=1.000;AN=62;DP=79;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1467;InbreedingCoeff=-0.1103;MQ=58.28;MQ0=0;QD=31.56 GT:AD:DP:GQ:PL ./. 1/1:0,3:3:9.02:98,9,0 1/1:0,1:1:3.01:39,3,0 1/1:0,1:1:3:29,3,0 ./. 1/1:0,3:3:9.03:109,9,0 ./. ./. 1/1:0,2:2:6.02:69,6,0 1/1:0,3:3:9.02:106,9,0 1/1:0,2:2:6.02:69,6,0 1/1:0,1:1:3.01:32,3,0 ./. 1/1:0,2:2:6.02:73,6,0 1/1:0,4:4:12.01:114,12,0 1/1:0,7:7:21.06:256,21,0 1/1:0,2:2:5.99:60,6,0 1/1:0,5:5:12.03:132,12,0 1/1:0,1:1:3.01:36,3,0 1/1:0,2:2:6.02:69,6,0 ./. ./. 1/1:0,2:2:6.02:80,6,0 1/1:0,2:2:6.02:73,6,0 ./. 1/1:0,1:1:3.01:42,3,0 1/1:0,1:1:3.01:32,3,0 1/1:0,4:4:9.01:95,9,0 ./. 1/1:0,2:2:6.01:66,6,0 1/1:0,2:2:3.01:38,3,0 1/1:0,5:6:12.04:152,12,0 1/1:0,1:1:3.01:32,3,0 ./. 1/1:0,1:1:2.99:24,3,0 1/1:0,3:3:9.03:107,9,0 1/1:0,4:4:12.03:132,12,0 ./. 1/1:0,2:2:6.02:67,6,0 1/1:0,1:1:3.01:39,3,0 1/1:0,2:2:6.02:68,6,0 1/1:0,3:3:9.03:108,9,0 15 66621346 . A G 10110.89 . AC=5;AF=0.060;AN=84;BaseQRankSum=14.606;DP=6329;DS;Dels=0.00;FS=2.621;HRun=0;HaplotypeScore=3.4697;InbreedingCoeff=-0.0633;MQ=59.43;MQ0=1;MQRankSum=0.568;QD=11.80;ReadPosRankSum=0.641 GT:AD:DP:GQ:PL 0/0:97,0:97:99:0,268,3224 0/0:138,0:138:99:0,361,4392 0/0:106,0:106:99:0,298,3580 0/0:239,0:239:99:0,626,7649 0/0:238,0:238:99:0,647,7890 0/0:230,0:231:99:0,605,7602 0/0:195,0:195:99:0,521,6452 0/0:239,0:241:99:0,605,7571 0/0:140,0:140:99:0,391,4606 0/0:119,0:120:99:0,334,3958 0/0:124,0:124:99:0,337,4030 0/0:82,1:83:99:0,235,2807 0/0:98,2:100:99:0,202,3058 0/0:110,0:110:99:0,307,3669 0/0:247,1:249:99:0,686,8161 0/0:105,0:105:99:0,304,3558 0/1:81,57:138:99:1520,0,2264 0/0:98,0:98:99:0,283,3282 0/0:215,0:215:99:0,566,6834 0/0:225,0:225:99:0,587,7210 0/1:88,67:155:99:1802,0,2521 0/0:141,0:142:99:0,373,4483 0/1:130,83:213:99:2450,0,3686 0/0:179,0:179:99:0,460,5706 0/0:223,0:223:99:0,596,7396 0/0:196,3:199:99:0,392,6051 0/0:104,0:105:99:0,271,3278 0/0:89,0:90:99:0,250,2951 0/0:102,0:102:99:0,274,3300 0/0:121,0:121:99:0,331,3970 0/0:110,0:110:99:0,313,3751 0/1:130,104:234:99:2758,0,3626 0/0:132,0:132:99:0,358,4319 0/0:117,0:117:99:0,328,3966 0/0:99,0:99:99:0,274,3314 0/0:156,1:157:99:0,380,5014 0/0:186,0:186:99:0,502,6029 0/1:61,56:117:99:1581,0,1681 0/0:122,0:122:99:0,337,3999 0/0:121,0:121:99:0,334,3959 0/0:102,2:105:99:0,253,3367 0/0:107,0:108:99:0,301,3575 15 66621382 . G A 2790.61 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.496;DP=4117;DS;Dels=0.00;FS=48.378;HRun=0;HaplotypeScore=2.8405;InbreedingCoeff=-0.0244;MQ=59.39;MQ0=0;MQRankSum=0.184;QD=14.69;ReadPosRankSum=-0.612 GT:AD:DP:GQ:PL 0/0:76,0:76:99:0,186,2158 0/0:85,0:85:99:0,223,2686 0/0:61,0:61:99:0,162,1889 0/0:143,0:144:99:0,403,5034 0/0:188,0:188:99:0,545,6862 0/0:141,0:142:99:0,385,4894 0/0:128,2:131:99:0,325,4580 0/0:131,0:131:99:0,370,4647 0/1:46,56:103:99:1476,0,1198 0/1:36,50:87:99:1377,0,858 0/0:92,0:92:99:0,253,3040 0/0:59,0:59:99:0,150,1737 0/0:55,0:55:99:0,153,1757 0/0:71,0:71:99:0,190,2266 0/0:196,0:198:99:0,535,6177 0/0:70,0:71:99:0,177,2113 0/0:82,0:83:99:0,205,2404 0/0:75,0:76:99:0,196,2315 0/0:137,0:138:99:0,367,4255 0/0:150,0:153:99:0,394,4655 0/0:107,1:109:99:0,268,3370 0/0:84,0:84:99:0,229,2738 0/0:143,0:143:99:0,403,5130 0/0:103,0:104:99:0,286,3605 0/0:144,0:144:99:0,418,5255 0/0:111,0:111:99:0,322,4059 0/0:54,0:54:99:0,147,1731 0/0:61,0:61:99:0,156,1844 0/0:63,0:64:99:0,177,2085 0/0:69,0:70:99:0,199,2328 0/0:90,0:90:99:0,238,2776 0/0:122,0:123:99:0,328,3919 0/0:89,0:89:99:0,241,2841 0/0:85,0:85:99:0,238,2822 0/0:70,0:70:99:0,174,2064 0/0:93,0:93:99:0,259,3072 0/0:124,0:124:99:0,319,3764 0/0:69,0:69:99:0,193,2244 0/0:82,0:82:99:0,211,2511 0/0:71,0:71:99:0,174,2032 0/0:63,0:63:99:0,162,1907 0/0:70,0:70:99:0,190,2230 15 66821250 . A G 13026.87 . AC=16;AF=0.190;AN=84;BaseQRankSum=8.520;DP=2640;Dels=0.00;FS=2.907;HRun=2;HaplotypeScore=0.8208;InbreedingCoeff=0.0735;MQ=59.35;MQ0=0;MQRankSum=3.375;QD=14.90;ReadPosRankSum=-0.650 GT:AD:DP:GQ:PL 0/1:30,18:48:99:484,0,825 0/1:27,18:45:99:504,0,769 1/1:0,37:37:99:1259,99,0 0/0:105,0:105:99:0,268,3482 0/0:113,0:113:99:0,298,3871 0/1:44,35:79:99:1029,0,1287 0/1:58,46:104:99:1331,0,1667 0/1:49,49:98:99:1336,0,1339 0/1:15,23:38:99:670,0,457 0/0:35,0:35:99:0,102,1251 1/1:0,51:51:99:1736,135,0 0/0:59,0:60:99:0,153,1938 0/0:40,0:40:99:0,108,1353 0/0:39,0:39:99:0,117,1409 0/1:77,57:134:99:1475,0,2057 0/0:39,0:39:93.29:0,93,1183 0/1:29,19:48:99:489,0,787 0/0:39,0:39:99:0,105,1317 0/0:79,0:79:99:0,199,2500 0/0:72,0:72:99:0,193,2405 0/0:78,1:79:99:0,180,2508 0/0:46,0:46:99:0,129,1591 0/0:110,0:110:99:0,277,3628 0/0:86,0:86:99:0,226,2972 0/0:99,0:99:99:0,220,2968 0/0:101,0:101:99:0,256,3340 0/0:39,0:39:96.30:0,96,1228 0/0:50,0:50:99:0,132,1655 0/0:47,0:47:99:0,117,1499 0/0:58,0:58:99:0,144,1830 0/1:28,18:46:99:479,0,832 0/0:80,0:80:99:0,193,2497 0/0:57,0:57:99:0,150,1883 0/0:36,0:36:93.30:0,93,1198 0/0:41,0:41:99:0,108,1373 0/1:27,34:61:99:1031,0,770 0/0:74,0:74:99:0,181,2299 0/1:28,17:45:99:503,0,868 0/0:50,0:50:99:0,138,1728 0/0:49,0:49:99:0,138,1730 0/0:43,0:43:99:0,111,1380 0/1:18,22:40:99:700,0,422 15 67473790 . C T 27.80 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.784;DP=1086;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.5385;InbreedingCoeff=-0.0121;MQ=59.30;MQ0=0;MQRankSum=0.360;QD=1.99;ReadPosRankSum=0.235 GT:AD:DP:GQ:PL 0/0:24,0:24:69.16:0,69,748 0/0:18,0:18:48.12:0,48,532 0/0:14,0:14:42.11:0,42,451 0/0:34,0:34:99:0,99,1143 0/0:26,0:26:78.23:0,78,921 0/0:31,0:31:84.25:0,84,1003 0/0:21,0:21:54.15:0,54,655 0/0:26,0:26:75.21:0,75,889 0/0:15,0:15:42.10:0,42,447 0/0:24,0:24:69.17:0,69,752 0/0:18,0:18:51.11:0,51,551 0/0:24,0:24:69.16:0,69,731 0/0:21,0:21:60.15:0,60,659 0/0:17,0:17:42.09:0,42,472 0/0:72,0:72:99:0,193,2173 0/0:31,0:31:90.23:0,90,986 0/0:27,0:27:75.19:0,75,828 0/1:10,3:14:74.01:74,0,246 0/0:42,0:42:99:0,114,1255 0/0:48,0:48:99:0,123,1387 0/0:40,0:40:99:0,111,1208 0/0:33,0:33:84.22:0,84,964 0/0:45,1:46:94.60:0,95,1515 0/0:13,0:13:36.08:0,36,408 0/0:36,0:36:96.28:0,96,1144 0/0:20,0:20:54.16:0,54,650 0/0:15,0:15:39.09:0,39,434 0/0:24,0:24:69.18:0,69,760 0/0:20,0:20:60.15:0,60,653 0/0:21,0:21:60.15:0,60,649 0/0:24,0:24:72.19:0,72,784 0/0:33,1:34:87.19:0,87,954 0/0:36,0:36:99:0,99,1072 0/0:18,0:18:51.12:0,51,549 0/0:19,0:19:54.14:0,54,594 0/0:15,0:15:45.10:0,45,479 0/0:33,0:33:93.24:0,93,1031 0/0:19,0:19:54.13:0,54,587 0/0:22,0:22:60.16:0,60,653 0/0:21,0:21:60.15:0,60,659 0/0:14,0:14:42.08:0,42,434 0/0:16,0:16:39.10:0,39,445 15 67547286 . G A 399.23 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.303;DP=719;Dels=0.00;FS=3.558;HRun=0;HaplotypeScore=0.7403;InbreedingCoeff=-0.0249;MQ=58.69;MQ0=0;MQRankSum=-0.318;QD=14.79;ReadPosRankSum=-0.096 GT:AD:DP:GQ:PL 0/0:12,0:12:30.09:0,30,371 0/0:6,0:6:18.06:0,18,217 0/0:13,0:13:36.11:0,36,452 0/0:20,0:20:54.16:0,54,683 0/0:17,0:17:48.13:0,48,616 0/0:16,0:16:42.09:0,42,509 0/0:17,0:17:39.13:0,39,521 0/0:16,0:16:42.13:0,42,535 0/0:13,0:13:39.12:0,39,484 0/0:11,0:11:33.10:0,33,409 0/0:19,0:19:54.14:0,54,644 0/0:12,0:12:36.08:0,36,421 0/0:12,0:12:36.10:0,36,415 0/0:18,0:18:45.13:0,45,546 0/0:45,0:45:99:0,120,1484 0/0:20,0:20:54.16:0,54,659 0/0:14,0:14:42.12:0,42,496 0/0:17,0:17:48.15:0,48,603 0/0:17,0:18:48.12:0,48,535 0/0:30,0:30:69.21:0,69,857 0/0:23,0:23:63.14:0,63,683 0/0:18,0:18:48.12:0,48,576 0/0:32,0:32:84.22:0,84,1085 0/0:8,0:8:18.06:0,18,249 0/0:18,1:19:31.48:0,31,665 0/0:15,0:15:42.13:0,42,544 0/0:14,0:14:42.13:0,42,523 0/0:14,0:14:36.11:0,36,443 0/0:18,0:18:45.13:0,45,547 0/0:9,0:9:27.05:0,27,304 0/0:15,0:15:33.10:0,33,421 0/0:23,0:23:54.17:0,54,701 0/0:20,0:20:45.14:0,45,581 0/1:6,9:15:99:276,0,143 0/1:5,7:12:99:186,0,123 0/0:14,0:14:39.12:0,39,477 0/0:26,0:26:69.20:0,69,834 0/0:15,0:15:42.10:0,42,482 0/0:14,0:14:39.12:0,39,480 0/0:18,0:18:45.10:0,45,531 0/0:14,0:14:36.11:0,36,455 0/0:17,0:17:45.14:0,45,556 15 67692502 . T C 82547.02 . AC=84;AF=1.000;AN=84;DP=2249;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8512;InbreedingCoeff=-0.0000;MQ=59.39;MQ0=0;QD=36.70 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1721,135,0 1/1:0,37:37:99:1309,102,0 1/1:0,49:49:99:1819,144,0 1/1:0,81:81:99:3099,232,0 1/1:0,77:77:99:3016,223,0 1/1:0,66:66:99:2590,193,0 1/1:0,76:76:99:2877,214,0 1/1:0,51:51:99:1961,147,0 1/1:0,43:43:99:1610,126,0 1/1:0,37:37:99:1327,105,0 1/1:0,55:55:99:2051,163,0 1/1:0,46:46:99:1714,135,0 1/1:0,26:26:75.23:929,75,0 1/1:0,37:37:99:1365,108,0 1/1:0,161:162:99:5527,430,0 1/1:0,38:38:99:1353,105,0 1/1:0,43:43:99:1646,129,0 1/1:0,36:36:99:1292,105,0 1/1:0,40:40:99:1461,114,0 1/1:0,57:57:99:2096,163,0 1/1:0,57:57:99:1907,147,0 1/1:0,38:38:99:1426,111,0 1/1:0,99:99:99:3857,286,0 1/1:0,60:60:99:2380,175,0 1/1:0,69:69:99:2577,193,0 1/1:0,62:62:99:2343,172,0 1/1:0,43:43:99:1619,126,0 1/1:0,54:54:99:1930,150,0 1/1:0,29:29:78.24:998,78,0 1/1:0,46:46:99:1633,126,0 1/1:0,46:46:99:1690,132,0 1/1:0,38:38:99:1421,111,0 1/1:0,54:54:99:1936,150,0 1/1:0,45:45:99:1683,132,0 1/1:0,46:46:99:1723,135,0 1/1:0,55:55:99:1895,147,0 1/1:0,37:37:99:1266,99,0 1/1:0,59:59:99:2047,160,0 1/1:0,50:50:99:1805,144,0 1/1:0,59:59:99:2244,178,0 1/1:0,43:43:99:1491,117,0 1/1:0,53:53:99:1913,150,0 15 67692518 . G C 1193.32 . 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G A 1957.47 . 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G A 991.25 . 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G T 1268.73 . AC=16;AF=0.190;AN=84;BaseQRankSum=-15.666;DP=4676;DS;Dels=0.00;FS=821.194;HRun=1;HaplotypeScore=3.6695;InbreedingCoeff=-0.2427;MQ=58.88;MQ0=0;MQRankSum=0.380;QD=0.75;ReadPosRankSum=-9.602 GT:AD:DP:GQ:PL 0/0:60,13:73:48.55:0,49,1390 0/0:65,13:78:99:0,128,1396 0/0:51,10:61:13.67:0,14,977 0/0:204,45:250:40.74:0,41,4604 0/1:181,50:231:61.97:62,0,4021 0/0:161,28:189:76.01:0,76,3688 0/1:119,28:147:34.54:35,0,2632 0/0:129,30:159:27.36:0,27,3058 0/1:66,18:84:99:130,0,1393 0/1:43,16:59:99:103,0,990 0/0:60,13:73:5.46:0,5,1322 0/1:65,14:79:27.62:28,0,1431 0/0:51,13:64:85.59:0,86,1254 0/1:64,14:78:17.38:17,0,1221 0/1:162,56:218:99:159,0,3277 0/0:57,18:75:8.06:0,8,1158 0/1:65,18:83:99:134,0,1435 0/0:62,10:72:99:0,131,1444 0/1:89,36:126:15.93:16,0,1747 0/0:133,21:154:96.47:0,96,3230 0/1:83,35:120:96.52:97,0,1809 0/0:104,15:119:77.48:0,77,2253 0/0:197,52:250:43.80:0,44,4443 0/0:118,23:141:99:0,160,2701 0/0:161,38:199:99:0,169,3938 0/0:130,17:147:99:0,123,3131 0/0:48,8:56:34.46:0,34,1189 0/1:60,16:76:70.36:70,0,1284 0/0:53,12:65:13.16:0,13,1018 0/1:64,19:83:42.91:43,0,1439 0/1:64,14:78:71.22:71,0,1194 0/0:133,20:153:99:0,170,3308 0/0:109,25:134:63.34:0,63,2297 0/0:76,11:88:73.16:0,73,1682 0/0:50,6:56:86.29:0,86,1291 0/0:72,12:84:75.13:0,75,1557 0/1:78,35:113:99:315,0,1489 0/0:72,17:89:35.29:0,35,1507 0/0:62,15:77:29.06:0,29,1327 0/0:61,12:73:99:0,105,1432 0/1:52,13:65:85.50:85,0,993 0/1:44,13:57:65.09:65,0,925 15 68605169 . G A 28297.01 . 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T G 435.81 . 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C T 16858.80 . AC=67;AF=0.798;AN=84;BaseQRankSum=-6.277;DP=718;Dels=0.00;FS=2.899;HRun=0;HaplotypeScore=0.8060;InbreedingCoeff=-0.2546;MQ=57.97;MQ0=0;MQRankSum=0.532;QD=23.48;ReadPosRankSum=2.051 GT:AD:DP:GQ:PL 0/1:14,7:21:99:191,0,445 1/1:0,12:12:33.07:369,33,0 0/1:4,4:8:86.95:87,0,133 1/1:0,28:28:81.24:976,81,0 1/1:0,26:26:75.23:934,75,0 0/1:8,7:15:99:176,0,276 0/1:10,8:18:99:205,0,262 0/1:13,6:19:99:164,0,335 1/1:0,12:12:33.08:381,33,0 0/1:7,5:12:99:119,0,183 1/1:0,13:13:30.09:362,30,0 1/1:0,9:9:27.08:331,27,0 1/1:0,12:12:27.08:328,27,0 1/1:2,8:10:24.07:284,24,0 0/1:26,23:49:99:586,0,757 0/1:6,5:11:90.62:129,0,91 0/1:7,10:17:99:308,0,165 1/1:0,10:10:27.07:323,27,0 0/1:11,8:19:99:139,0,306 0/1:18,13:31:99:365,0,485 1/1:0,21:21:63.19:772,63,0 1/1:1,14:15:36.05:389,36,0 1/1:0,37:37:99:1280,105,0 0/1:10,4:14:99:101,0,304 0/1:4,9:13:50.56:264,0,51 0/1:8,14:22:99:358,0,242 1/1:0,14:14:39.11:459,39,0 1/1:0,12:12:30.09:374,30,0 0/1:5,8:13:83.38:235,0,83 1/1:0,21:21:54.17:666,54,0 1/1:0,10:10:27.08:327,27,0 1/1:0,21:21:54.10:609,54,0 1/1:0,24:24:63.17:721,63,0 1/1:0,9:9:27.08:329,27,0 1/1:1,18:19:16.36:583,16,0 1/1:0,11:11:30.10:379,30,0 0/1:16,20:36:99:556,0,445 1/1:0,9:9:27.08:317,27,0 0/1:3,5:8:53.02:125,0,53 1/1:0,16:16:45.12:525,45,0 1/1:0,9:9:27.08:335,27,0 1/1:0,12:12:33.10:399,33,0 15 68628163 . C T 1486.38 . AC=8;AF=0.095;AN=84;BaseQRankSum=1.733;DP=665;Dels=0.00;FS=3.064;HRun=0;HaplotypeScore=0.5666;InbreedingCoeff=-0.1075;MQ=58.43;MQ0=0;MQRankSum=0.196;QD=10.54;ReadPosRankSum=1.314 GT:AD:DP:GQ:PL 0/1:6,16:22:99:473,0,125 0/0:14,0:14:27.05:0,27,294 0/1:5,4:9:99:106,0,141 0/0:29,0:29:78.20:0,78,918 0/0:17,0:17:45.14:0,45,567 0/0:11,0:11:30.09:0,30,370 0/1:11,9:20:99:264,0,302 0/0:17,0:17:45.13:0,45,544 0/0:9,0:9:27.07:0,27,300 0/0:12,0:12:30.08:0,30,342 0/0:18,0:18:45.12:0,45,520 0/0:7,0:7:21.06:0,21,242 0/0:11,0:11:21.04:0,21,234 0/0:10,0:10:24.07:0,24,280 0/1:22,14:36:99:389,0,587 0/1:7,5:12:99:111,0,176 0/1:10,3:13:69.64:70,0,244 0/0:13,0:13:33.09:0,33,397 0/0:16,0:17:45.12:0,45,520 0/0:29,0:29:75.15:0,75,819 0/0:23,0:23:66.18:0,66,773 0/0:12,0:12:36.09:0,36,411 0/0:27,0:27:75.20:0,75,884 0/0:14,0:14:36.08:0,36,407 0/1:9,5:14:85.97:86,0,238 0/0:15,0:15:36.08:0,36,425 0/0:14,0:14:42.10:0,42,456 0/0:15,0:15:45.09:0,45,479 0/1:10,5:15:99:109,0,299 0/0:22,0:22:63.16:0,63,714 0/0:4,0:4:12.03:0,12,131 0/0:18,0:18:48.14:0,48,555 0/0:20,0:20:51.13:0,51,576 0/0:10,0:10:30.06:0,30,338 0/0:16,0:16:45.13:0,45,522 0/0:11,0:11:30.07:0,30,337 0/0:40,0:40:99:0,102,1134 0/0:8,0:8:24.07:0,24,288 0/0:10,0:10:27.06:0,27,299 0/0:17,0:17:48.12:0,48,534 0/0:4,0:4:12.03:0,12,136 0/0:10,0:10:30.06:0,30,327 15 68643659 . G A 217.92 . 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G A 2868.22 . AC=15;AF=0.179;AN=84;BaseQRankSum=-11.760;DP=923;Dels=0.00;FS=3.461;HRun=0;HaplotypeScore=0.5179;InbreedingCoeff=-0.2238;MQ=58.86;MQ0=0;MQRankSum=-1.136;QD=11.95;ReadPosRankSum=-0.493 GT:AD:DP:GQ:PL 0/0:13,0:13:36.11:0,36,456 0/0:15,0:15:39.12:0,39,491 0/0:14,0:14:36.11:0,36,460 0/0:35,0:35:90.29:0,90,1197 0/0:54,0:54:99:0,147,1985 0/0:26,0:26:69.23:0,69,926 0/0:23,0:23:69.22:0,69,904 0/0:26,0:26:66.22:0,66,885 0/1:8,3:11:77.43:77,0,229 0/0:16,0:16:39.13:0,39,506 0/0:11,1:12:2.51:0,3,343 0/0:21,0:21:57.18:0,57,721 0/0:18,0:18:48.15:0,48,605 0/0:19,0:19:51.15:0,51,622 0/0:57,0:57:99:0,144,1834 0/0:21,0:21:57.18:0,57,712 0/0:18,0:18:51.13:0,51,621 0/1:10,10:20:99:293,0,300 0/0:32,0:32:90.24:0,90,1062 0/0:37,0:37:99:0,99,1261 0/0:23,0:23:60.18:0,60,747 0/1:15,6:21:99:148,0,444 0/0:41,0:41:99:0,108,1458 0/1:6,7:13:99:177,0,201 0/0:23,0:23:69.23:0,69,931 0/1:6,10:16:99:289,0,157 0/1:4,8:12:99:243,0,117 0/1:11,3:14:70.52:71,0,307 0/0:12,0:12:30.09:0,30,385 0/0:21,0:21:60.19:0,60,754 0/0:18,0:18:42.14:0,42,561 0/0:41,0:41:99:0,105,1315 0/0:23,0:23:63.19:0,63,782 0/1:11,6:17:99:168,0,331 0/1:5,5:10:99:119,0,163 0/1:7,8:15:99:208,0,185 0/1:18,12:30:99:330,0,498 0/1:5,12:17:99:314,0,144 0/1:10,9:19:99:254,0,315 0/1:6,11:17:99:290,0,153 0/1:6,2:8:46.43:46,0,197 0/0:24,0:24:66.21:0,66,838 15 68937669 . C T 246.12 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.923;DP=1912;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.3536;InbreedingCoeff=-0.0120;MQ=59.29;MQ0=0;MQRankSum=-0.793;QD=13.67;ReadPosRankSum=-1.143 GT:AD:DP:GQ:PL 0/0:29,0:30:81.19:0,81,912 0/0:32,0:32:87.23:0,87,971 0/0:25,0:25:66.16:0,66,734 0/0:137,0:137:99:0,355,4174 0/0:111,0:111:99:0,295,3568 0/0:86,0:86:99:0,211,2530 0/0:59,0:59:99:0,165,1947 0/0:73,0:73:99:0,187,2256 0/0:38,0:38:99:0,108,1173 0/0:25,0:25:69.15:0,69,751 0/1:8,10:18:99:292,0,185 0/0:25,0:25:72.18:0,72,790 0/0:27,0:27:78.16:0,78,821 0/0:36,0:36:99:0,99,1102 0/0:95,0:95:99:0,235,2667 0/0:24,0:24:69.13:0,69,730 0/0:29,0:29:81.20:0,81,873 0/0:27,0:27:78.16:0,78,829 0/0:42,0:42:99:0,111,1214 0/0:51,0:52:99:0,126,1444 0/0:47,0:47:99:0,123,1366 0/0:26,0:26:63.15:0,63,711 0/0:132,0:133:99:0,343,4116 0/0:65,0:65:99:0,162,1996 0/0:83,0:83:99:0,205,2518 0/0:65,0:65:99:0,168,2011 0/0:16,0:16:42.11:0,42,473 0/0:25,0:25:66.15:0,66,690 0/0:16,0:16:45.13:0,45,527 0/0:43,0:43:99:0,105,1144 0/0:32,0:32:90.20:0,90,960 0/0:56,1:57:99:0,150,1664 0/0:30,0:30:81.17:0,81,915 0/0:27,0:27:72.19:0,72,806 0/0:32,1:33:44.22:0,44,836 0/0:42,0:42:99:0,111,1251 0/0:41,0:41:99:0,105,1156 0/0:29,0:29:78.16:0,78,836 0/0:30,0:30:75.18:0,75,802 0/0:29,0:29:84.22:0,84,935 0/0:18,0:18:51.10:0,51,549 0/0:33,1:34:56.27:0,56,978 15 69003913 . G A 1877.06 . AC=4;AF=0.048;AN=84;BaseQRankSum=4.010;DP=1679;Dels=0.00;FS=3.379;HRun=0;HaplotypeScore=1.0687;InbreedingCoeff=-0.0500;MQ=59.15;MQ0=0;MQRankSum=-0.333;QD=13.22;ReadPosRankSum=-1.375 GT:AD:DP:GQ:PL 0/0:32,0:32:84.24:0,84,982 0/0:25,0:25:69.19:0,69,797 0/0:31,0:31:84.24:0,84,991 0/0:70,0:70:99:0,181,2266 0/0:63,1:64:99:0,136,2097 0/0:41,0:41:99:0,105,1328 0/0:37,0:37:93.25:0,93,1143 0/0:52,0:52:99:0,135,1748 0/0:36,0:36:96.24:0,96,1072 0/0:13,0:13:39.11:0,39,444 0/0:39,0:39:99:0,108,1256 0/0:34,0:34:84.24:0,84,1013 0/0:30,0:30:81.22:0,81,958 0/0:36,0:38:93.25:0,93,1096 0/0:124,0:125:99:0,310,3628 0/0:32,0:32:96.24:0,96,1094 0/0:33,0:33:90.25:0,90,1061 0/0:31,0:31:87.23:0,87,991 0/0:47,0:48:99:0,126,1427 0/0:54,0:54:99:0,144,1672 0/0:47,0:47:99:0,117,1375 0/0:31,0:31:81.21:0,81,910 0/0:50,0:50:99:0,129,1657 0/0:43,0:43:99:0,111,1419 0/0:43,0:43:99:0,102,1315 0/0:30,0:30:75.23:0,75,945 0/0:22,0:22:57.16:0,57,669 0/0:30,0:30:87.24:0,87,989 0/0:40,0:40:99:0,111,1324 0/0:37,0:37:99:0,99,1136 0/0:23,0:23:54.15:0,54,631 0/0:47,0:47:99:0,132,1534 0/0:44,0:44:99:0,117,1379 0/0:36,0:36:96.25:0,96,1093 0/0:37,1:38:97.84:0,98,1204 0/0:39,0:39:99:0,105,1212 0/1:20,26:47:99:727,0,490 0/0:34,0:34:90.23:0,90,1025 0/1:18,21:39:99:613,0,481 0/1:13,14:27:99:430,0,381 0/1:21,8:29:99:193,0,574 0/0:38,0:38:99:0,102,1203 15 69325581 . C T 17070.07 . AC=81;AF=0.964;AN=84;BaseQRankSum=-0.046;DP=596;Dels=0.00;FS=0.950;HRun=0;HaplotypeScore=0.7004;InbreedingCoeff=-0.0390;MQ=58.35;MQ0=0;MQRankSum=-0.025;QD=28.64;ReadPosRankSum=0.028 GT:AD:DP:GQ:PL 1/1:0,17:17:45.12:540,45,0 1/1:0,19:19:45.13:562,45,0 1/1:0,19:19:42.11:492,42,0 1/1:0,32:32:72.22:912,72,0 1/1:0,16:16:42.13:509,42,0 1/1:0,15:16:39.12:478,39,0 1/1:0,9:9:24.07:298,24,0 1/1:0,8:8:24.07:282,24,0 1/1:0,7:7:18.05:210,18,0 1/1:0,5:5:12.04:150,12,0 1/1:0,10:10:27.06:303,27,0 1/1:0,12:12:33.09:383,33,0 1/1:0,11:11:30.08:349,30,0 1/1:0,10:10:21.06:260,21,0 0/1:13,17:30:99:405,0,315 1/1:0,10:10:30.06:339,30,0 0/1:5,10:15:99:305,0,104 1/1:0,7:7:18.06:224,18,0 1/1:0,17:17:36.10:421,36,0 1/1:0,22:22:60.17:710,60,0 1/1:0,17:17:42.11:488,42,0 1/1:0,15:16:36.10:424,36,0 1/1:0,22:22:48.13:571,48,0 1/1:0,8:8:18.04:219,18,0 1/1:0,15:15:33.10:416,33,0 1/1:0,17:17:39.11:464,39,0 1/1:0,16:17:42.11:499,42,0 0/1:2,9:11:29.19:270,0,29 1/1:0,9:9:27.08:314,27,0 1/1:0,12:12:30.09:354,30,0 1/1:0,16:16:45.13:540,45,0 1/1:0,23:23:57.16:664,57,0 1/1:0,17:17:45.13:536,45,0 1/1:0,9:9:21.06:247,21,0 1/1:0,11:11:33.10:399,33,0 1/1:0,9:9:24.04:265,24,0 1/1:0,12:13:30.09:357,30,0 1/1:0,17:17:42.13:516,42,0 1/1:0,14:14:36.11:432,36,0 1/1:0,13:13:39.11:444,39,0 1/1:0,9:9:21.06:240,21,0 1/1:0,9:9:24.07:282,24,0 15 69328226 . C T 54029.94 . AC=48;AF=0.571;AN=84;BaseQRankSum=-24.736;DP=3671;DS;Dels=0.00;FS=17.736;HRun=1;HaplotypeScore=1.9723;InbreedingCoeff=-0.1667;MQ=58.89;MQ0=0;MQRankSum=0.196;QD=19.17;ReadPosRankSum=-1.733 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1765,144,0 1/1:0,60:60:99:2154,175,0 1/1:2,47:49:99:1661,102,0 0/0:209,0:209:99:0,608,7995 0/1:84,83:167:99:2571,0,2756 0/0:151,0:151:99:0,430,5676 0/1:62,61:123:99:1873,0,1912 0/0:133,0:133:99:0,367,4919 1/1:1,50:52:99:1780,147,0 0/1:23,28:51:99:837,0,698 0/1:29,29:58:99:786,0,888 0/1:32,24:56:99:707,0,1012 0/0:55,1:56:99:0,128,1986 0/1:32,39:71:99:1168,0,966 0/1:75,82:157:99:2460,0,2237 1/1:0,65:65:99:2239,184,0 0/1:27,25:52:99:771,0,813 0/1:26,36:62:99:1066,0,728 0/0:136,1:137:99:0,353,4827 0/0:167,0:167:99:0,469,5948 0/1:63,42:105:99:1227,0,1929 0/1:54,42:96:99:1186,0,1652 0/1:98,88:186:99:2601,0,3176 0/1:49,40:89:99:1197,0,1601 0/1:76,56:132:99:1684,0,2526 1/1:4,79:83:77.89:2740,78,0 1/1:0,42:42:99:1489,120,0 0/1:20,29:49:99:903,0,614 0/1:19,26:45:99:767,0,552 1/1:0,50:50:99:1782,144,0 0/1:35,25:60:99:751,0,1064 0/1:79,72:151:99:2083,0,2309 1/1:0,92:92:99:3129,256,0 1/1:0,47:47:99:1657,135,0 1/1:0,47:48:99:1706,138,0 0/1:29,29:58:99:872,0,926 0/1:75,61:136:99:1711,0,2251 0/1:32,33:65:99:960,0,1009 0/1:30,22:52:99:658,0,945 0/1:28,20:48:99:536,0,868 0/1:32,17:49:99:489,0,1020 1/1:0,59:59:99:2065,169,0 15 69714068 . A G 1751.73 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.748;DP=4632;DS;Dels=0.00;FS=1.208;HRun=0;HaplotypeScore=2.3290;InbreedingCoeff=-0.0244;MQ=59.66;MQ0=0;MQRankSum=1.213;QD=12.79;ReadPosRankSum=-1.214 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,178,2134 0/1:32,36:68:99:1085,0,850 0/1:43,26:69:99:729,0,1155 0/0:198,0:198:99:0,539,6591 0/0:219,0:219:99:0,593,7384 0/0:181,0:181:99:0,494,6261 0/0:182,0:183:99:0,494,6196 0/0:187,0:187:99:0,488,6144 0/0:88,0:88:99:0,250,2972 0/0:65,0:65:99:0,181,2164 0/0:63,0:63:99:0,172,2069 0/0:67,0:67:99:0,190,2250 0/0:74,0:74:99:0,208,2498 0/0:86,0:86:99:0,232,2820 0/0:232,0:233:99:0,617,7434 0/0:52,0:52:99:0,144,1716 0/0:73,0:73:99:0,205,2475 0/0:61,0:61:99:0,169,2032 0/0:140,0:140:99:0,388,4701 0/0:117,0:117:99:0,328,3968 0/0:138,0:138:99:0,376,4600 0/0:74,0:74:99:0,202,2425 0/0:218,0:218:99:0,596,7326 0/0:177,0:177:99:0,469,5901 0/0:207,0:207:99:0,533,6712 0/0:203,0:203:99:0,527,6600 0/0:69,0:69:99:0,193,2328 0/0:86,0:86:99:0,241,2865 0/0:75,0:75:99:0,211,2525 0/0:67,0:67:99:0,190,2284 0/0:66,0:66:99:0,190,2285 0/0:141,0:141:99:0,361,4500 0/0:80,0:80:99:0,217,2587 0/0:93,0:93:99:0,253,3058 0/0:61,0:61:99:0,169,2035 0/0:74,0:74:99:0,208,2509 0/0:98,0:98:99:0,274,3311 0/0:96,0:96:99:0,265,3182 0/0:78,0:78:99:0,223,2691 0/0:84,0:84:99:0,238,2844 0/0:76,0:76:99:0,199,2428 0/0:83,0:83:99:0,226,2762 15 69715570 . A G 2636.49 . 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TA T 392.17 . 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A G 105208.51 . 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T C 1813.86 . 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C T 99068.76 . 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C G 16593.93 . 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G C 137641.65 . 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C T 2279.65 . 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A C 1043.42 . AC=1;AF=0.012;AN=84;BaseQRankSum=-8.427;DP=4446;DS;Dels=0.00;FS=0.583;HRun=0;HaplotypeScore=1.0894;InbreedingCoeff=-0.0120;MQ=59.70;MQ0=0;MQRankSum=1.001;QD=15.12;ReadPosRankSum=-1.247 GT:AD:DP:GQ:PL 0/0:80,0:80:99:0,232,2893 0/0:105,1:106:99:0,292,3642 0/0:96,0:96:99:0,271,3428 0/0:136,0:136:99:0,388,4991 0/0:147,0:147:99:0,418,5509 0/0:149,0:149:99:0,427,5689 0/0:120,0:120:99:0,334,4382 0/0:130,0:130:99:0,373,4859 0/0:83,0:83:99:0,229,2898 0/0:81,0:81:99:0,223,2812 0/0:77,0:77:99:0,211,2677 0/0:91,0:91:99:0,256,3195 0/0:73,0:73:99:0,202,2557 0/1:29,40:69:99:1090,0,805 0/0:236,0:236:99:0,638,8062 0/0:56,0:56:99:0,156,1976 0/0:105,0:105:99:0,286,3595 0/0:91,0:91:99:0,262,3299 0/0:128,0:128:99:0,346,4391 0/0:115,0:115:99:0,316,4038 0/0:146,0:147:99:0,385,4907 0/0:88,0:88:99:0,235,2986 0/0:161,0:161:99:0,442,5799 0/0:153,0:153:99:0,421,5563 0/0:123,0:123:99:0,340,4491 0/0:115,0:115:99:0,316,4147 0/0:65,0:65:99:0,184,2302 0/0:98,0:98:99:0,277,3482 0/0:75,0:75:99:0,211,2664 0/0:107,0:107:99:0,286,3635 0/0:87,0:87:99:0,244,3100 0/0:129,0:129:99:0,343,4385 0/0:76,0:77:99:0,220,2767 0/0:91,0:91:99:0,268,3366 0/0:94,0:94:99:0,268,3377 0/0:112,0:112:99:0,298,3793 0/0:128,0:128:99:0,340,4327 0/0:87,0:87:99:0,235,2979 0/0:79,0:79:99:0,226,2824 0/0:86,0:86:99:0,241,3052 0/0:90,0:90:99:0,247,3139 0/0:84,0:84:99:0,232,2948 15 71403595 . T C 565.59 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.776;DP=2258;Dels=0.00;FS=4.433;HRun=3;HaplotypeScore=0.9862;InbreedingCoeff=-0.0120;MQ=59.43;MQ0=0;MQRankSum=0.572;QD=15.71;ReadPosRankSum=0.502 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,105,1318 0/0:27,0:27:69.21:0,69,867 0/0:35,0:35:99:0,102,1245 0/0:98,0:98:99:0,277,3525 0/0:65,0:65:99:0,193,2491 0/0:72,0:72:99:0,193,2528 0/0:56,0:56:99:0,147,1939 0/0:69,0:69:99:0,187,2421 0/0:33,0:33:93.28:0,93,1160 0/0:38,0:38:93.29:0,93,1168 0/0:34,0:34:90.28:0,90,1129 0/0:33,0:33:93.28:0,93,1140 0/1:16,20:36:99:612,0,461 0/0:50,0:50:99:0,141,1769 0/0:142,0:142:99:0,367,4647 0/0:38,0:38:99:0,108,1354 0/0:53,0:53:99:0,150,1846 0/0:29,0:29:84.26:0,84,1036 0/0:73,0:73:99:0,190,2392 0/0:67,0:67:99:0,172,2141 0/0:79,0:79:99:0,211,2659 0/0:44,0:44:99:0,123,1522 0/0:108,2:110:99:0,239,3589 0/0:62,0:62:99:0,166,2121 0/0:89,0:89:99:0,229,2982 0/0:60,0:60:99:0,153,1996 0/0:24,0:24:66.21:0,66,837 0/0:39,0:39:99:0,105,1332 0/0:30,0:30:81.26:0,81,1028 0/0:47,0:47:99:0,135,1674 0/0:35,0:35:93.29:0,93,1191 0/0:77,0:77:99:0,190,2446 0/0:56,0:56:99:0,144,1822 0/0:30,0:30:81.25:0,81,1022 0/0:51,0:51:99:0,144,1805 0/0:33,0:33:96.31:0,96,1210 0/0:77,0:77:99:0,199,2515 0/0:49,0:49:99:0,129,1619 0/0:47,0:47:99:0,126,1592 0/0:51,0:51:99:0,144,1787 0/0:38,0:38:99:0,108,1316 0/0:44,0:44:99:0,120,1506 15 72511415 . G A 603.30 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.714;DP=3535;Dels=0.00;FS=4.037;HRun=0;HaplotypeScore=2.2813;InbreedingCoeff=-0.0120;MQ=58.65;MQ0=0;MQRankSum=1.403;QD=11.38;ReadPosRankSum=0.447 GT:AD:DP:GQ:PL 0/0:69,0:69:99:0,177,2064 0/0:61,0:61:99:0,159,1798 0/1:30,22:53:99:650,0,857 0/0:198,0:198:99:0,484,6044 0/0:177,0:177:99:0,442,5537 0/0:113,0:113:99:0,301,3774 0/0:115,0:115:99:0,298,3762 0/0:126,0:126:99:0,322,3943 0/0:72,0:72:99:0,205,2382 0/0:58,0:58:99:0,162,1848 0/0:62,0:62:99:0,159,1820 0/0:75,0:76:99:0,201,2280 0/0:56,0:56:99:0,141,1575 0/0:74,0:75:99:0,193,2228 0/0:223,1:224:99:0,581,6756 0/0:59,0:59:99:0,168,1941 0/0:76,0:76:99:0,196,2319 0/0:63,0:63:99:0,150,1822 0/0:88,0:89:99:0,226,2634 0/0:73,0:73:99:0,190,2246 0/0:64,0:65:99:0,162,1959 0/0:72,0:72:99:0,202,2332 0/0:178,0:180:99:0,427,5328 0/0:98,0:98:99:0,253,3127 0/0:141,0:141:99:0,343,4356 0/0:95,0:95:99:0,247,3060 0/0:45,0:45:99:0,120,1368 0/0:57,0:58:99:0,165,1939 0/0:52,0:52:99:0,147,1702 0/0:63,0:63:99:0,168,1980 0/0:59,0:59:99:0,153,1760 0/0:87,0:87:99:0,229,2718 0/0:55,0:55:99:0,150,1764 0/0:68,0:69:99:0,186,2130 0/0:56,0:56:99:0,141,1657 0/0:62,0:63:99:0,156,1800 0/0:75,0:75:99:0,202,2385 0/0:54,0:54:99:0,150,1669 0/0:58,0:58:99:0,150,1762 0/0:71,0:71:99:0,195,2199 0/0:55,0:55:99:0,150,1741 0/0:69,0:69:99:0,196,2241 15 72642905 . C T 951.69 . AC=1;AF=0.012;AN=84;BaseQRankSum=-8.051;DP=3647;DS;Dels=0.00;FS=3.405;HRun=0;HaplotypeScore=2.7821;InbreedingCoeff=-0.0120;MQ=59.39;MQ0=0;MQRankSum=-0.696;QD=16.70;ReadPosRankSum=-0.602 GT:AD:DP:GQ:PL 0/0:76,0:76:99:0,223,2792 0/0:68,0:68:99:0,193,2421 0/0:56,0:56:99:0,163,2034 0/0:165,0:165:99:0,482,6305 0/0:147,0:147:99:0,433,5760 0/0:123,0:124:99:0,352,4696 0/0:98,0:98:99:0,274,3640 0/0:98,0:98:99:0,277,3707 0/0:58,0:58:99:0,168,2093 0/0:54,0:54:99:0,160,2006 0/1:22,35:57:99:998,0,601 0/0:63,0:63:99:0,178,2234 0/0:50,0:50:99:0,138,1763 0/0:67,0:67:99:0,199,2480 0/0:147,0:149:99:0,415,5173 0/0:49,1:50:99:0,110,1723 0/0:74,0:74:99:0,220,2749 0/0:52,0:52:99:0,156,1956 0/0:130,0:130:99:0,361,4455 0/0:149,0:149:99:0,418,5210 0/0:131,0:131:99:0,370,4547 0/0:87,0:88:99:0,250,3109 0/0:176,0:176:99:0,500,6652 0/0:88,0:88:99:0,250,3319 0/0:108,0:108:99:0,310,4110 0/0:81,0:81:99:0,226,2941 0/0:59,0:59:99:0,172,2179 0/0:62,0:62:99:0,178,2201 0/0:62,0:62:99:0,178,2230 0/0:70,0:70:99:0,205,2575 0/0:67,0:67:99:0,196,2436 0/0:110,0:110:99:0,313,3954 0/0:108,0:108:99:0,310,3894 0/0:64,0:64:99:0,190,2351 0/0:68,0:68:99:0,199,2455 0/0:69,0:69:99:0,199,2415 0/0:124,0:124:99:0,349,4336 0/0:60,0:60:99:0,165,2056 0/0:70,0:70:99:0,205,2543 0/0:57,0:58:99:0,169,2086 0/0:71,0:71:99:0,205,2544 0/0:67,0:67:99:0,202,2490 15 72700069 . G A 363.58 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.155;DP=3425;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8361;InbreedingCoeff=-0.0120;MQ=59.42;MQ0=0;MQRankSum=0.944;QD=6.06;ReadPosRankSum=0.343 GT:AD:DP:GQ:PL 0/0:65,1:66:99:0,130,1836 0/0:78,0:78:99:0,205,2315 0/1:42,18:60:99:410,0,1129 0/0:143,0:143:99:0,358,4446 0/0:109,0:109:99:0,277,3414 0/0:120,0:120:99:0,310,3832 0/0:86,0:87:99:0,235,2854 0/0:91,0:94:99:0,241,2975 0/0:86,0:87:99:0,214,2467 0/0:78,0:78:99:0,205,2272 0/0:58,0:58:99:0,159,1810 0/0:60,0:60:99:0,159,1776 0/0:50,0:50:99:0,123,1435 0/0:60,0:61:99:0,168,1880 0/0:214,0:218:99:0,553,6323 0/0:60,0:60:99:0,165,1813 0/0:61,0:61:99:0,165,1858 0/0:52,0:52:99:0,138,1533 0/0:67,0:67:99:0,177,1976 0/0:94,0:94:99:0,244,2778 0/0:91,0:91:99:0,232,2590 0/0:48,0:48:99:0,123,1399 0/0:126,0:126:99:0,319,4033 0/0:100,0:100:99:0,247,3096 0/0:108,0:110:99:0,280,3401 0/0:78,0:78:99:0,208,2493 0/0:62,0:62:99:0,168,1893 0/0:94,0:94:99:0,265,2905 0/0:70,0:70:99:0,196,2199 0/0:69,1:70:99:0,159,2061 0/0:61,0:61:99:0,165,1923 0/0:81,0:81:99:0,229,2602 0/0:58,0:58:99:0,153,1722 0/0:59,0:61:99:0,159,1794 0/0:78,0:78:99:0,214,2394 0/0:83,0:83:99:0,226,2520 0/0:95,0:96:99:0,229,2561 0/0:75,0:75:99:0,192,2175 0/0:60,0:60:99:0,162,1784 0/0:76,0:76:99:0,202,2290 0/0:77,0:77:99:0,199,2265 0/0:67,0:67:99:0,171,1929 15 73023937 . T C 169923.26 . AC=84;AF=1.000;AN=84;BaseQRankSum=-0.081;DP=5164;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.3439;InbreedingCoeff=0.0000;MQ=59.08;MQ0=0;MQRankSum=-1.328;QD=32.91;ReadPosRankSum=1.000 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2741,232,0 1/1:0,111:111:99:3415,292,0 1/1:0,97:97:99:3171,268,0 1/1:0,213:214:99:7436,587,0 1/1:0,210:210:99:7409,581,0 1/1:0,188:188:99:6543,521,0 1/1:0,166:166:99:5809,454,0 1/1:0,169:169:99:5895,463,0 1/1:0,103:103:99:3425,292,0 1/1:0,91:92:99:3047,265,0 1/1:0,73:73:99:2357,202,0 1/1:2,73:75:99:2387,166,0 1/1:0,63:64:99:2042,174,0 1/1:0,89:89:99:2885,244,0 1/1:0,235:236:99:7590,641,0 1/1:0,77:77:99:2613,226,0 1/1:0,88:88:99:2838,244,0 1/1:0,83:83:99:2691,235,0 1/1:1,148:149:99:4641,394,0 1/1:1,147:148:99:4600,388,0 1/1:0,172:174:99:5498,469,0 1/1:0,102:102:99:3238,277,0 1/1:0,215:215:99:7709,608,0 1/1:0,158:158:99:5388,418,0 1/1:0,192:192:99:6611,518,0 1/1:0,176:176:99:5714,448,0 1/1:0,67:67:99:2159,187,0 1/1:0,95:95:99:3042,259,0 1/1:0,82:82:99:2721,232,0 1/1:0,85:86:99:2766,241,0 1/1:0,82:82:99:2771,235,0 1/1:0,180:180:99:5695,472,0 1/1:0,89:89:99:2821,241,0 1/1:0,82:82:99:2711,229,0 1/1:2,101:103:99:3184,239,0 1/1:0,122:122:99:3894,331,0 1/1:0,158:160:99:4633,379,0 1/1:0,89:89:99:2771,238,0 1/1:0,131:131:99:4361,379,0 1/1:0,89:89:99:2884,247,0 1/1:0,84:84:99:2801,238,0 1/1:0,88:88:99:3014,259,0 15 73029216 . A AC 1001.13 . AC=7;AF=0.083;AN=84;BaseQRankSum=14.842;DP=9321;DS;FS=3200.000;HRun=2;HaplotypeScore=699.0724;InbreedingCoeff=-0.1074;MQ=59.61;MQ0=1;MQRankSum=8.562;QD=0.61;ReadPosRankSum=-46.930 GT:AD:DP:GQ:PL 0/0:224,0:224:99:0,121,5316 0/0:155,32:187:99:0,160,4634 0/0:207,0:207:62.38:0,62,4756 0/1:184,66:250:28.29:28,0,5166 0/1:250,0:250:70.17:70,0,5527 0/0:250,0:248:99:0,354,6424 0/0:250,0:248:99:0,366,6510 0/0:196,54:249:99:0,328,6431 0/0:204,1:205:97.37:0,97,5054 0/0:189,0:189:76.23:0,76,4336 0/0:177,0:177:99:0,105,4138 0/0:204,0:204:5.74:0,6,4568 0/0:163,0:162:44.80:0,45,3528 0/0:202,0:202:99:0,205,5277 0/1:118,132:249:99:629,0,2301 0/1:138,45:183:99:118,0,3696 0/1:170,51:221:99:207,0,4893 0/0:188,0:188:99:0,141,4606 0/0:250,0:249:99:0,258,5763 0/1:250,0:250:46.42:46,0,4494 0/0:250,0:250:88.21:0,88,5453 0/0:250,0:249:99:0,198,5715 0/0:250,0:250:99:0,178,5597 0/0:242,0:240:99:0,227,6253 0/0:249,0:245:99:0,117,5421 0/0:238,0:237:99:0,118,5897 0/0:165,0:164:99:0,118,3786 0/0:250,0:250:18.24:0,18,5783 0/0:181,0:181:63.24:0,63,4179 0/0:192,47:239:2.10:2,0,5471 0/0:202,0:202:99:0,122,4932 0/1:250,0:250:22.44:22,0,4775 0/0:250,0:249:99:0,186,6088 0/0:209,0:209:99:0,110,4757 0/0:189,0:189:5.41:0,5,4452 0/0:187,46:233:99:0,222,5545 0/0:208,42:250:99:0,350,6412 0/0:207,0:207:99:0,159,5156 0/0:190,0:190:99:0,106,4518 0/0:250,0:250:40.72:0,41,5616 0/0:195,0:195:10.04:0,10,4186 0/0:230,1:231:99:0,183,5662 15 73052840 . T C 24914.67 . 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A G 23525.98 . 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C T 19755.73 . 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C T 10702.82 . 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T C 1493.89 . 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G T 2444.45 . 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G T 16.46 . 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C T 2240.87 . 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A G 225.13 . 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TAAG T 82737.55 . 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G A 4731.66 . 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T C 11007.09 . AC=21;AF=0.250;AN=84;BaseQRankSum=5.971;DP=1520;Dels=0.00;FS=20.488;HRun=2;HaplotypeScore=1.3961;InbreedingCoeff=-0.0823;MQ=58.49;MQ0=0;MQRankSum=0.855;QD=15.27;ReadPosRankSum=0.227 GT:AD:DP:GQ:PL 0/1:10,11:21:99:305,0,311 0/1:9,14:23:99:409,0,234 0/0:20,0:20:57.17:0,57,697 0/1:42,39:81:99:1145,0,1288 0/0:79,1:80:99:0,220,2700 0/1:25,23:49:99:731,0,765 0/1:25,23:48:99:681,0,715 0/0:47,0:47:99:0,126,1531 0/0:16,0:16:45.12:0,45,528 0/0:20,0:20:54.16:0,54,648 0/1:5,8:13:99:252,0,111 0/0:30,0:30:81.22:0,81,951 0/0:28,0:28:81.24:0,81,969 0/0:28,0:28:78.22:0,78,957 0/0:99,0:100:99:0,256,3141 0/1:14,12:26:99:279,0,443 0/0:28,1:29:81.24:0,81,980 0/0:17,0:17:45.12:0,45,525 0/1:24,16:40:99:389,0,678 0/1:38,26:64:99:724,0,1076 1/1:0,38:39:99:1270,105,0 0/1:14,12:26:99:273,0,388 0/1:48,41:89:99:1222,0,1392 0/0:49,0:50:99:0,132,1673 0/0:46,0:47:99:0,129,1566 0/0:43,1:44:95.68:0,96,1421 0/1:8,12:20:99:385,0,184 0/0:34,0:34:93.28:0,93,1142 0/1:16,11:27:99:266,0,479 0/0:23,0:23:69.21:0,69,841 0/0:27,0:27:78.24:0,78,957 1/1:0,47:47:99:1518,120,0 0/1:21,16:37:99:420,0,519 0/0:24,0:24:63.17:0,63,772 0/0:26,0:26:63.17:0,63,750 0/1:14,10:24:99:230,0,392 0/0:37,0:37:96.25:0,96,1118 0/0:25,0:25:69.19:0,69,843 0/1:23,10:33:99:256,0,635 0/0:29,0:29:75.22:0,75,931 0/0:17,1:18:9.57:0,10,528 0/1:6,8:14:99:252,0,174 15 74706943 . G A 10058.23 . AC=7;AF=0.083;AN=84;BaseQRankSum=-12.881;DP=4313;DS;Dels=0.00;FS=0.275;HRun=1;HaplotypeScore=5.1115;InbreedingCoeff=-0.0909;MQ=59.10;MQ0=0;MQRankSum=-0.230;QD=12.96;ReadPosRankSum=-0.463 GT:AD:DP:GQ:PL 0/1:45,31:76:99:734,0,1201 0/1:41,46:88:99:1263,0,1133 0/0:67,0:67:99:0,187,2222 0/0:174,0:174:99:0,490,6150 0/0:183,0:183:99:0,506,6467 0/1:67,56:124:99:1431,0,2052 0/1:66,68:134:99:1860,0,1833 0/0:132,0:132:99:0,376,4795 0/0:77,0:77:99:0,226,2755 0/0:72,0:72:99:0,205,2468 0/1:44,38:83:99:1099,0,1230 0/0:78,0:78:99:0,214,2635 0/0:69,0:69:99:0,187,2239 0/0:88,0:88:99:0,250,3091 0/0:201,0:203:99:0,548,6634 0/0:74,0:74:99:0,205,2469 0/0:75,0:75:99:0,223,2723 0/0:66,0:66:99:0,196,2376 0/0:137,1:141:99:0,352,4168 0/0:176,0:176:99:0,487,6016 0/1:60,47:109:99:1258,0,1385 0/0:105,0:106:99:0,301,3707 0/0:166,0:167:99:0,469,6031 0/0:105,0:105:99:0,283,3662 0/0:127,0:127:99:0,367,4731 0/0:136,0:136:99:0,358,4643 0/0:65,0:65:99:0,178,2141 0/0:72,0:72:99:0,208,2530 0/0:73,0:73:99:0,205,2491 0/0:84,0:84:99:0,235,2841 0/0:67,0:67:99:0,196,2399 0/1:77,85:162:99:2414,0,1915 0/0:116,0:116:99:0,331,3951 0/0:72,0:72:99:0,211,2565 0/0:77,1:78:99:0,182,2544 0/0:95,0:95:99:0,268,3322 0/0:138,1:141:99:0,352,4268 0/0:84,0:84:99:0,229,2786 0/0:61,0:62:99:0,162,1979 0/0:54,0:54:99:0,156,1904 0/0:70,0:70:99:0,196,2395 0/0:87,1:88:99:0,217,2977 15 74707189 . C T 252.65 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.374;DP=2076;Dels=0.00;FS=11.997;HRun=0;HaplotypeScore=1.7435;InbreedingCoeff=-0.0120;MQ=58.46;MQ0=0;MQRankSum=0.546;QD=10.98;ReadPosRankSum=0.894 GT:AD:DP:GQ:PL 0/0:32,0:32:84.24:0,84,1022 0/0:35,0:35:90.22:0,90,1044 0/0:29,0:29:81.23:0,81,965 0/0:130,0:130:99:0,337,4182 0/0:102,0:102:99:0,265,3291 0/0:77,0:78:99:0,196,2444 0/0:46,0:46:99:0,120,1518 0/0:71,0:71:99:0,199,2476 0/0:28,0:28:78.23:0,78,931 0/0:28,0:28:78.19:0,78,873 0/0:32,0:32:90.26:0,90,1078 0/0:24,0:24:60.16:0,60,700 0/0:34,0:34:93.26:0,93,1099 0/0:35,0:35:93.26:0,93,1101 0/0:103,0:103:99:0,268,3163 0/0:54,0:54:99:0,153,1714 0/0:31,0:31:84.22:0,84,975 0/0:28,0:28:78.21:0,78,884 0/0:67,0:67:99:0,187,2179 0/0:85,0:85:99:0,223,2633 0/0:51,0:51:99:0,135,1585 0/0:56,0:56:99:0,153,1830 0/0:139,0:139:99:0,343,4375 0/0:62,0:62:99:0,162,2061 0/0:65,0:65:99:0,166,2117 0/0:48,0:48:99:0,120,1468 0/0:27,0:27:60.17:0,60,731 0/0:30,0:30:87.23:0,87,995 0/0:16,0:16:45.12:0,45,504 0/0:33,0:33:84.23:0,84,1006 0/0:41,0:41:99:0,120,1417 0/0:77,0:77:99:0,208,2447 0/0:49,0:49:99:0,120,1443 0/0:23,0:23:66.16:0,66,723 0/0:20,0:20:51.13:0,51,579 0/0:31,0:31:75.19:0,75,899 0/0:69,1:70:99:0,193,2213 0/0:27,0:27:78.18:0,78,866 0/0:44,0:44:99:0,126,1440 0/0:44,0:44:99:0,123,1411 0/0:28,0:28:75.20:0,75,862 0/1:13,10:23:99:299,0,387 15 74707215 . G A 446.41 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.423;DP=2277;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.3629;InbreedingCoeff=-0.0120;MQ=58.54;MQ0=0;MQRankSum=1.698;QD=9.11;ReadPosRankSum=1.266 GT:AD:DP:GQ:PL 0/0:38,0:38:96.27:0,96,1213 0/0:39,0:39:99:0,105,1315 0/0:39,0:39:99:0,102,1321 0/0:114,0:114:99:0,301,4018 0/0:96,0:96:99:0,268,3595 0/0:78,0:78:99:0,205,2701 0/1:30,19:49:99:493,0,896 0/0:64,0:66:99:0,181,2347 0/0:32,0:32:87.26:0,87,1111 0/0:30,0:30:90.26:0,90,1114 0/0:38,0:38:99:0,102,1296 0/0:34,0:34:93.28:0,93,1159 0/0:32,0:32:84.26:0,84,1056 0/0:39,0:39:99:0,108,1341 0/0:134,0:134:99:0,343,4373 0/0:48,0:48:99:0,138,1694 0/0:44,0:44:99:0,123,1531 0/0:26,0:26:78.24:0,78,977 0/0:80,0:80:99:0,214,2692 0/0:104,0:104:99:0,265,3361 0/0:73,0:74:99:0,175,2166 0/0:63,0:63:99:0,163,2082 0/0:131,0:131:99:0,346,4715 0/0:58,0:58:99:0,153,2054 0/0:57,0:57:99:0,153,2068 0/0:59,0:59:99:0,157,2110 0/0:26,0:26:69.20:0,69,868 0/0:39,0:39:99:0,99,1249 0/0:30,0:30:84.27:0,84,1077 0/0:46,0:46:99:0,126,1568 0/0:47,0:47:99:0,132,1672 0/0:92,0:92:99:0,235,2989 0/0:48,0:48:99:0,138,1721 0/0:28,0:28:75.20:0,75,895 0/0:24,0:24:66.19:0,66,829 0/0:33,0:33:93.28:0,93,1144 0/0:77,0:77:99:0,211,2640 0/0:38,0:38:99:0,105,1329 0/0:38,0:38:99:0,102,1318 0/0:43,0:43:99:0,117,1489 0/0:34,0:35:99:0,99,1251 0/0:31,0:31:84.26:0,84,1057 15 74741686 . C T 356.58 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.741;DP=1461;Dels=0.00;FS=8.880;HRun=0;HaplotypeScore=1.0729;InbreedingCoeff=-0.0244;MQ=59.27;MQ0=0;MQRankSum=1.085;QD=6.04;ReadPosRankSum=-0.164 GT:AD:DP:GQ:PL 0/0:24,0:24:63.20:0,63,806 0/0:31,0:31:75.23:0,75,964 0/0:26,0:26:69.21:0,69,856 0/0:85,0:85:99:0,208,2772 0/0:69,0:69:99:0,184,2446 0/0:31,0:31:81.24:0,81,1046 0/0:40,0:40:99:0,108,1432 0/0:40,0:40:99:0,105,1391 0/1:21,6:27:99:150,0,557 0/0:18,0:18:42.13:0,42,547 0/1:22,10:32:99:269,0,631 0/0:38,0:38:99:0,102,1289 0/0:16,0:16:45.12:0,45,551 0/0:28,0:28:81.24:0,81,1000 0/0:98,0:98:99:0,223,2831 0/0:26,0:26:72.20:0,72,877 0/0:25,0:25:66.20:0,66,840 0/0:24,0:24:66.19:0,66,807 0/0:36,1:37:73.06:0,73,1224 0/0:52,0:52:99:0,126,1598 0/0:46,0:47:99:0,114,1392 0/0:31,0:31:81.25:0,81,1022 0/0:80,0:80:99:0,202,2672 0/0:46,0:46:99:0,123,1603 0/0:43,0:43:99:0,99,1331 0/0:28,0:28:72.24:0,72,976 0/0:22,0:22:57.15:0,57,687 0/0:24,0:24:63.18:0,63,793 0/0:17,0:17:48.11:0,48,571 0/0:17,0:17:45.14:0,45,577 0/0:25,0:25:75.21:0,75,916 0/0:62,0:62:99:0,150,1933 0/0:20,0:20:60.16:0,60,728 0/0:17,0:17:45.14:0,45,567 0/0:21,0:21:54.16:0,54,670 0/0:30,0:30:81.23:0,81,1002 0/0:44,0:44:99:0,111,1364 0/0:22,0:22:57.17:0,57,696 0/0:22,0:22:60.19:0,60,755 0/0:23,0:23:60.15:0,60,733 0/0:26,0:26:75.18:0,75,900 0/0:27,0:27:72.20:0,72,875 15 74967445 . T C 3901.48 . 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T C 13023.35 . 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G T 10864.67 . 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C T 1200.69 . 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G A 830.49 . 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C T 1635.53 . 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C T 287.61 . 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G A 2842.62 . 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G A 3480.44 . 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A G 830.82 . 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T TA 1459.98 . 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C A 1314.31 . AC=17;AF=0.202;AN=84;BaseQRankSum=-22.608;DP=5638;DS;Dels=0.00;FS=3200.000;HRun=1;HaplotypeScore=3.4282;InbreedingCoeff=-0.2692;MQ=59.09;MQ0=2;MQRankSum=0.365;QD=0.54;ReadPosRankSum=-30.673 GT:AD:DP:GQ:PL 0/1:78,24:102:5.68:6,0,2318 0/1:85,29:114:20.41:20,0,2493 0/0:59,8:67:99:0,102,1930 0/1:146,62:208:25.31:25,0,4499 0/1:142,71:213:99:113,0,4546 0/0:150,55:206:99:0,99,4852 0/0:137,51:188:92.19:0,92,4643 0/1:125,50:175:78.63:79,0,3984 0/0:62,24:86:46.98:0,47,1874 0/0:91,26:117:58.87:0,59,2697 0/1:74,20:94:18.73:19,0,2343 0/0:54,17:71:16.75:0,17,1631 0/1:56,25:82:99:183,0,1673 0/0:75,25:100:17.06:0,17,2180 0/0:195,47:242:94:0,94,5925 0/0:63,18:81:34.90:0,35,1818 0/0:83,26:109:1.10:5,0,2584 0/0:76,3:79:99:0,190,2321 0/0:144,36:180:99:0,210,4259 0/0:185,50:235:99:0,280,5872 0/0:138,43:181:99:0,121,4090 0/1:88,51:139:99:213,0,2495 0/1:143,70:213:67.69:68,0,4495 0/0:129,50:179:99:0,192,4298 0/1:141,60:202:73.79:74,0,4419 0/0:130,45:176:99:0,115,3974 0/1:59,20:79:20.58:21,0,1813 0/1:78,26:104:6.79:7,0,2299 0/1:53,28:81:99:147,0,1620 0/0:98,25:123:99:0,120,3009 0/0:67,24:92:99:0,103,2210 0/1:155,60:216:99:215,0,4734 0/0:93,38:131:40.14:0,40,2948 0/0:76,16:92:99:0,119,2377 0/1:79,32:111:40.98:41,0,2198 0/1:84,34:118:99:125,0,2374 0/1:142,32:174:99:116,0,3918 0/0:89,25:115:87.30:0,87,2785 0/0:62,15:77:31.30:0,31,1969 0/0:69,22:91:1.47:0,1,2049 0/0:59,23:82:56.56:0,57,1763 0/0:88,24:112:99:0,117,2803 15 75310286 . C T 1308.84 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.872;DP=3677;Dels=0.00;FS=1.159;HRun=0;HaplotypeScore=2.5613;InbreedingCoeff=-0.0244;MQ=59.29;MQ0=0;MQRankSum=-0.393;QD=10.47;ReadPosRankSum=-0.296 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,153,1740 0/0:56,0:56:99:0,159,1808 0/0:58,0:58:99:0,159,1848 0/0:181,0:181:99:0,457,5765 0/0:164,0:164:99:0,439,5476 0/0:112,0:112:99:0,271,3440 0/0:90,0:90:99:0,223,2842 0/0:121,0:121:99:0,295,3829 0/0:72,0:72:99:0,192,2206 0/0:69,0:69:99:0,183,2083 0/0:72,0:72:99:0,186,2138 0/0:52,0:52:99:0,150,1690 0/0:51,0:51:99:0,129,1512 0/0:51,0:51:99:0,153,1737 0/0:198,0:198:99:0,484,5714 0/0:75,0:75:99:0,205,2367 0/0:67,0:67:99:0,162,1917 0/0:56,0:56:99:0,162,1821 0/0:134,0:134:99:0,346,4003 0/0:144,0:144:99:0,367,4281 0/0:129,0:129:99:0,340,3972 0/0:87,0:87:99:0,226,2666 0/0:188,0:188:99:0,460,5916 0/0:83,0:83:99:0,217,2710 0/0:122,0:122:99:0,301,3854 0/0:83,0:83:99:0,202,2572 0/0:47,0:47:99:0,126,1467 0/0:57,0:57:99:0,159,1801 0/0:42,0:42:99:0,117,1332 0/0:69,0:69:99:0,186,2144 0/0:63,0:63:99:0,156,1833 0/0:133,0:133:99:0,331,3966 0/0:77,0:77:99:0,208,2397 0/0:49,0:49:99:0,138,1570 0/0:63,0:63:99:0,165,1954 0/0:56,0:56:99:0,153,1787 0/0:121,0:121:99:0,310,3594 0/0:63,1:64:99:0,141,1943 0/0:74,0:74:99:0,190,2241 0/1:41,31:72:99:851,0,1114 0/1:34,19:53:99:520,0,852 0/0:65,0:65:99:0,180,2054 15 75630717 . C G 40.92 . AC=9;AF=0.129;AN=70;BaseQRankSum=-3.921;DP=1060;Dels=0.00;FS=19.043;HRun=1;HaplotypeScore=0.1945;InbreedingCoeff=-0.0202;MQ=10.73;MQ0=807;MQRankSum=-2.834;QD=0.19;ReadPosRankSum=-4.441 GT:AD:DP:GQ:PL 0/0:20,5:25:8.99:0,9,77 0/1:16,6:22:1.76:25,3,0 ./. 0/1:31,19:50:17.68:18,0,40 0/1:29,14:43:13.68:14,0,49 0/1:21,6:27:15.67:16,0,70 0/0:20,7:27:5.99:0,6,49 0/0:19,11:30:5.99:0,6,49 0/0:18,6:24:6.01:0,6,63 0/0:14,1:15:9:0,9,94 0/0:9,5:14:5.99:0,6,49 ./. 1/1:12,4:16:3:25,3,0 0/0:20,3:23:15:0,15,137 0/0:66,16:82:20.99:0,21,196 0/0:24,8:32:9.02:0,9,107 0/0:17,3:20:6:0,6,62 0/1:13,5:18:21.65:22,0,27 0/0:13,4:17:6:0,6,58 ./. ./. 0/0:22,7:29:3:0,3,25 0/0:38,18:56:6:0,6,54 0/0:17,10:27:3.01:0,3,39 ./. 0/0:17,3:20:9:0,9,89 0/1:12,5:17:18.69:19,0,19 0/0:15,5:20:3.01:0,3,39 0/0:14,1:15:6:0,6,58 0/0:12,6:18:12.02:0,12,125 ./. 0/0:27,6:33:15:0,15,144 0/0:17,9:26:3:0,3,25 0/0:18,0:18:6.01:0,6,55 0/0:15,3:18:3:0,3,27 0/0:21,7:28:8.99:0,9,77 0/0:25,3:28:9.01:0,9,90 0/0:17,7:24:3:0,3,25 0/0:10,2:12:3:0,3,25 ./. 0/0:13,2:15:6.01:0,6,62 0/1:13,5:18:12.69:13,0,69 15 75631681 . A G 380 . 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G T 24.67 . AC=5;AF=0.060;AN=84;BaseQRankSum=-14.949;DP=3663;DS;Dels=0.00;FS=1040.295;HRun=1;HaplotypeScore=1.2354;InbreedingCoeff=-0.0645;MQ=58.40;MQ0=0;MQRankSum=-0.706;QD=0.06;ReadPosRankSum=-15.378 GT:AD:DP:GQ:PL 0/0:60,16:76:99:0,109,1706 0/0:63,17:80:77.25:0,77,1682 0/0:54,15:69:99:0,135,1696 0/0:72,46:118:75.30:0,75,2100 0/0:67,26:93:15.70:0,16,2063 0/0:48,32:80:99:0,107,1396 0/1:38,25:63:15.49:15,0,1047 0/0:59,23:82:34.10:0,34,1531 0/0:76,25:101:99:0,127,2331 0/0:50,18:68:99:0,110,1351 0/0:58,17:75:99:0,147,1852 0/0:47,23:70:22.07:0,22,1306 0/0:49,21:70:8.50:0,9,1465 0/0:61,15:76:99:0,118,1674 0/0:183,67:250:99:0,335,5559 0/0:45,23:68:43.52:0,44,1224 0/0:51,25:76:59.79:0,60,1461 0/1:63,23:86:42.09:42,0,1557 0/1:79,26:105:17.27:17,0,2077 0/0:84,30:114:94.72:0,95,2264 0/0:87,19:106:99:0,103,2752 0/0:52,21:73:36.09:0,36,1507 0/0:69,38:107:99:0,126,2119 0/0:46,23:69:99:0,108,1426 0/0:55,30:85:88.65:0,89,1453 0/0:55,26:81:53.91:0,54,1562 0/0:47,18:65:91.67:0,92,1427 0/0:69,26:95:95.40:0,95,1971 0/0:63,22:85:58.51:0,59,1816 0/0:45,21:66:99:0,120,1514 0/1:43,25:68:26.01:26,0,1310 0/1:70,26:96:17.70:18,0,1970 0/0:71,27:98:99:0,162,2069 0/0:54,15:69:99:0,104,1565 0/0:47,24:71:62.27:0,62,1366 0/0:71,24:95:99:0,142,2125 0/0:74,24:98:99:0,127,2335 0/0:71,19:90:99:0,109,2010 0/0:60,21:81:64.46:0,64,1870 0/0:76,28:104:62.15:0,62,2181 0/0:45,16:61:99:0,114,1442 0/0:52,27:79:89.49:0,89,1545 15 76017452 . C T 11614.93 . 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G A 270.36 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.193;DP=750;Dels=0.00;FS=6.425;HRun=0;HaplotypeScore=0.3616;InbreedingCoeff=-0.0243;MQ=59.31;MQ0=0;MQRankSum=0.090;QD=15.90;ReadPosRankSum=1.402 GT:AD:DP:GQ:PL 0/0:13,0:13:39.11:0,39,455 0/0:10,0:10:30.09:0,30,356 0/0:20,0:20:57.17:0,57,698 0/0:23,0:23:66.21:0,66,860 0/0:20,0:20:57.19:0,57,756 0/0:15,0:15:42.12:0,42,536 0/0:18,0:18:45.15:0,45,608 0/0:18,0:18:48.16:0,48,634 0/0:12,0:12:33.10:0,33,392 0/0:13,0:13:39.12:0,39,483 0/0:16,0:16:45.13:0,45,531 0/1:2,8:10:37.33:250,0,37 0/1:4,3:7:82.72:83,0,129 0/0:14,0:14:39.12:0,39,476 0/0:56,0:57:99:0,159,1886 0/0:20,0:20:57.17:0,57,688 0/0:19,0:19:57.16:0,57,669 0/0:17,0:17:48.15:0,48,584 0/0:19,0:19:57.17:0,57,686 0/0:35,0:35:81.23:0,81,964 0/0:17,0:17:45.12:0,45,543 0/0:16,0:16:45.13:0,45,533 0/0:23,0:23:63.20:0,63,833 0/0:12,0:12:36.11:0,36,469 0/0:15,0:15:42.13:0,42,550 0/0:12,0:12:36.11:0,36,473 0/0:18,0:18:51.15:0,51,615 0/0:17,0:17:48.14:0,48,561 0/0:19,0:19:54.16:0,54,645 0/0:15,0:15:39.11:0,39,476 0/0:17,0:17:51.16:0,51,619 0/0:22,0:22:51.15:0,51,640 0/0:18,0:18:45.13:0,45,533 0/0:9,0:9:27.08:0,27,319 0/0:11,0:11:30.09:0,30,366 0/0:15,0:15:42.11:0,42,497 0/0:25,0:25:63.18:0,63,755 0/0:28,0:28:78.23:0,78,932 0/0:17,0:17:48.15:0,48,596 0/0:19,0:19:54.15:0,54,631 0/0:13,0:13:36.10:0,36,420 0/0:16,0:16:42.12:0,42,491 15 76136157 . G C 10.17 . AC=4;AF=0.057;AN=70;BaseQRankSum=-2.376;DP=297;Dels=0.00;FS=15.542;HRun=2;HaplotypeScore=0.1553;InbreedingCoeff=-0.1398;MQ=56.85;MQ0=0;MQRankSum=0.270;QD=0.27;ReadPosRankSum=-2.508 GT:AD:DP:GQ:PL 0/0:1,3:4:3.01:0,3,38 ./. 0/0:5,1:6:9.02:0,9,96 0/0:11,4:15:21.03:0,21,226 0/1:7,10:17:34.33:34,0,101 0/0:8,1:9:15.04:0,15,172 0/0:10,2:12:12.02:0,12,136 0/0:6,3:9:6:0,6,61 ./. 0/0:3,1:4:6.01:0,6,60 ./. 0/0:6,1:7:9.02:0,9,99 0/0:7,1:8:12.01:0,12,116 0/0:5,1:6:12.02:0,12,117 0/0:11,4:15:12.03:0,12,131 0/0:5,0:5:3.01:0,3,31 0/1:2,3:5:18.64:19,0,64 0/0:2,3:5:3.01:0,3,31 0/0:4,3:7:6.02:0,6,69 0/0:5,0:5:6.02:0,6,78 0/0:8,1:9:21.05:0,21,222 0/1:10,1:11:13.50:14,0,154 0/0:13,7:20:27.01:0,27,264 0/0:7,2:9:6:0,6,58 0/0:5,5:10:3.01:0,3,38 0/0:5,2:7:9.01:0,9,93 0/0:3,1:4:9.01:0,9,98 0/0:1,2:3:3.01:0,3,32 ./. ./. 0/0:9,1:10:14.99:0,15,139 0/0:10,2:12:21:0,21,207 ./. 0/0:5,2:7:9.02:0,9,97 0/0:5,3:8:9:0,9,85 ./. 0/0:4,2:6:9.02:0,9,89 0/0:1,2:3:3.01:0,3,32 0/0:3,0:3:6.02:0,6,64 0/0:4,0:4:9.03:0,9,109 0/1:2,3:5:20.67:21,0,23 0/0:2,2:4:3.01:0,3,37 15 76171466 . T A 1119.36 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.468;DP=2324;Dels=0.00;FS=0.554;HRun=0;HaplotypeScore=0.5643;InbreedingCoeff=-0.0244;MQ=59.39;MQ0=0;MQRankSum=-0.596;QD=9.41;ReadPosRankSum=-0.206 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,117,1449 0/0:53,0:53:99:0,126,1605 0/0:49,0:49:99:0,123,1531 0/0:82,0:82:99:0,196,2492 0/0:88,0:88:99:0,214,2733 0/0:62,0:62:99:0,153,2011 0/0:76,0:76:99:0,169,2224 0/0:52,0:52:99:0,147,1811 0/0:51,0:51:99:0,120,1516 0/0:46,0:46:99:0,120,1461 0/0:40,0:40:99:0,111,1358 0/0:44,0:44:99:0,114,1400 0/0:30,0:30:81.25:0,81,1001 0/0:45,0:45:99:0,108,1369 0/0:152,0:152:99:0,367,4608 0/0:23,0:23:60.19:0,60,745 0/0:41,0:41:99:0,105,1298 0/1:30,17:47:99:472,0,819 0/1:43,29:72:99:710,0,1102 0/0:91,0:92:99:0,226,2839 0/0:78,0:78:99:0,181,2311 0/0:41,0:41:99:0,102,1275 0/0:72,1:73:99:0,169,2177 0/0:63,0:63:99:0,156,2019 0/0:80,0:80:99:0,181,2360 0/0:66,0:66:99:0,172,2189 0/0:32,0:32:87.27:0,87,1062 0/0:51,0:51:99:0,135,1651 0/0:48,0:48:99:0,120,1488 0/0:50,0:50:99:0,129,1584 0/0:33,0:33:96.29:0,96,1146 0/0:60,0:60:99:0,156,1959 0/0:38,0:39:99:0,102,1247 0/0:33,0:34:81.26:0,81,1031 0/0:35,0:35:84.26:0,84,1066 0/0:45,0:45:99:0,102,1315 0/0:65,0:66:99:0,162,2033 0/0:58,0:58:99:0,141,1762 0/0:42,0:42:99:0,108,1339 0/0:44,0:44:99:0,108,1350 0/0:49,0:49:99:0,114,1446 0/0:45,0:45:99:0,126,1539 15 76578762 . G A 1959.55 . AC=4;AF=0.048;AN=84;BaseQRankSum=-10.937;DP=1808;Dels=0.00;FS=2.577;HRun=0;HaplotypeScore=0.8203;InbreedingCoeff=0.4750;MQ=59.19;MQ0=0;MQRankSum=1.614;QD=15.93;ReadPosRankSum=-0.604 GT:AD:DP:GQ:PL 0/0:31,0:31:87.28:0,87,1107 0/0:32,0:32:90.27:0,90,1118 0/0:35,0:35:90.28:0,90,1146 0/0:61,0:61:99:0,160,2150 0/0:65,0:65:99:0,160,2185 0/0:69,0:69:99:0,163,2249 0/0:60,0:60:99:0,147,2032 0/0:56,0:56:99:0,135,1852 0/0:31,0:31:84.27:0,84,1074 0/0:21,0:21:60.19:0,60,752 0/0:30,0:30:78.22:0,78,985 0/0:26,1:27:49.59:0,50,907 0/0:44,0:44:99:0,117,1497 0/0:40,0:40:99:0,102,1328 0/0:119,0:119:99:0,277,3548 0/0:23,0:23:66.21:0,66,830 0/0:33,0:34:87.28:0,87,1110 0/0:31,1:32:52.02:0,52,1022 0/0:76,0:76:99:0,193,2459 0/0:53,0:53:99:0,123,1618 0/0:66,0:67:99:0,172,2201 0/0:30,0:30:81.25:0,81,1024 0/1:40,29:69:99:692,0,1117 0/0:50,0:50:99:0,117,1623 0/0:48,0:48:99:0,117,1613 0/0:65,0:65:99:0,154,2130 0/0:27,0:27:78.25:0,78,998 0/0:24,0:24:66.21:0,66,834 0/0:25,0:25:60.18:0,60,772 0/0:35,0:35:93.27:0,93,1148 0/0:28,0:28:81.25:0,81,1010 0/0:62,0:62:99:0,144,1862 0/0:32,0:32:90.26:0,90,1111 0/0:36,0:36:90.28:0,90,1155 0/0:28,0:28:81.26:0,81,1036 0/0:38,0:38:87.28:0,87,1141 0/0:43,0:44:99:0,105,1350 0/0:44,0:44:99:0,120,1525 0/0:27,0:27:75.23:0,75,932 0/1:11,13:24:99:391,0,317 0/0:36,0:36:96.31:0,96,1240 1/1:0,30:30:81.24:969,81,0 15 76630717 . C T 699.41 . AC=5;AF=0.060;AN=84;BaseQRankSum=-4.709;DP=247;Dels=0.00;FS=3.012;HRun=1;HaplotypeScore=0.1122;InbreedingCoeff=0.1060;MQ=58.35;MQ0=0;MQRankSum=1.019;QD=18.90;ReadPosRankSum=1.147 GT:AD:DP:GQ:PL 0/0:3,0:3:9.03:0,9,116 0/0:2,0:2:3.01:0,3,45 0/1:4,7:11:99:215,0,107 0/0:12,0:12:33.11:0,33,443 0/0:7,0:7:15.05:0,15,208 0/0:10,0:10:27.09:0,27,369 0/0:7,0:7:18.06:0,18,244 0/0:4,0:4:12.03:0,12,147 0/0:4,0:4:12.04:0,12,144 0/0:8,0:8:24.08:0,24,313 0/0:6,0:6:15.05:0,15,184 0/1:1,4:5:0.51:114,9,0 0/0:3,0:3:9.02:0,9,104 0/1:1,7:8:15.24:226,0,15 0/0:11,0:11:27.09:0,27,354 0/0:9,0:9:27.08:0,27,337 0/0:7,0:7:18.06:0,18,228 0/0:4,0:4:9.03:0,9,107 0/0:1,0:1:3.01:0,3,33 0/0:11,0:11:30.08:0,30,366 0/0:7,0:7:18.06:0,18,224 0/0:2,0:2:6.02:0,6,71 0/0:15,0:15:39.13:0,39,529 0/0:4,0:4:9.03:0,9,111 0/0:1,0:1:3.01:0,3,38 0/0:7,0:7:18.06:0,18,240 0/0:3,0:3:9.03:0,9,111 0/0:4,0:4:9.03:0,9,112 0/1:1,6:7:18.25:192,0,18 0/0:5,0:5:15.05:0,15,192 0/0:6,0:6:18.06:0,18,224 0/0:4,0:4:9.03:0,9,113 0/0:12,0:12:30.08:0,30,382 0/0:4,0:4:9.03:0,9,115 0/0:3,0:3:9.03:0,9,114 0/1:3,3:6:54.56:55,0,100 0/0:5,0:5:15.05:0,15,186 0/0:5,0:5:9.03:0,9,128 0/0:2,0:3:6.02:0,6,70 0/0:1,0:1:3.01:0,3,39 0/0:5,0:5:15.04:0,15,178 0/0:5,0:5:15.04:0,15,173 15 76726465 . G T 31295.21 . AC=33;AF=0.393;AN=84;BaseQRankSum=-21.904;DP=2821;Dels=0.00;FS=10.696;HRun=3;HaplotypeScore=1.0940;InbreedingCoeff=-0.0481;MQ=59.44;MQ0=0;MQRankSum=0.208;QD=17.31;ReadPosRankSum=0.115 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,153,1920 0/1:26,25:51:99:696,0,742 0/1:22,17:39:99:445,0,693 1/1:1,104:105:99:3344,247,0 0/1:44,44:88:99:1223,0,1373 0/1:45,43:88:99:1254,0,1349 0/1:50,27:77:99:722,0,1541 0/0:87,0:87:99:0,223,3006 0/1:26,27:53:99:731,0,742 0/1:24,22:46:99:615,0,714 0/0:58,0:58:99:0,159,2024 1/1:0,52:52:99:1787,156,0 0/1:16,14:30:99:394,0,459 0/1:29,18:47:99:477,0,852 0/1:86,71:157:99:1852,0,2395 0/0:45,0:45:99:0,126,1608 0/1:31,21:52:99:513,0,930 0/0:58,0:58:99:0,162,2002 0/0:131,0:131:99:0,355,4332 0/1:65,39:104:99:1010,0,2018 0/0:93,0:93:99:0,256,3098 0/1:27,28:55:99:786,0,745 0/1:45,45:90:99:1210,0,1383 1/1:0,69:69:99:2289,190,0 1/1:0,79:79:99:2574,214,0 1/1:2,65:67:99:2051,106,0 0/1:25,16:41:99:420,0,790 0/1:26,21:47:99:588,0,796 0/1:27,28:55:99:775,0,798 0/0:56,0:56:99:0,156,1961 0/1:30,24:54:99:623,0,864 0/1:52,47:100:99:1322,0,1616 0/0:76,0:76:99:0,214,2657 0/0:48,0:48:99:0,135,1669 0/0:53,0:53:99:0,153,1938 0/0:45,0:45:99:0,123,1548 0/0:105,1:106:99:0,280,3354 0/1:25,29:54:99:813,0,761 0/0:47,0:47:99:0,132,1677 0/1:23,25:48:99:750,0,650 0/0:53,0:53:99:0,147,1830 1/1:0,60:60:99:2031,172,0 15 77021044 . G C 655.11 . AC=18;AF=0.214;AN=84;BaseQRankSum=-14.658;DP=1736;Dels=0.00;FS=83.921;HRun=2;HaplotypeScore=1.4140;InbreedingCoeff=-0.2865;MQ=58.85;MQ0=0;MQRankSum=-1.507;QD=0.86;ReadPosRankSum=-5.518 GT:AD:DP:GQ:PL 0/0:28,2:30:63.12:0,63,734 0/1:20,14:34:50.62:51,0,425 0/1:17,14:31:57.28:57,0,431 0/1:43,37:80:73.40:73,0,927 0/0:37,12:49:78.21:0,78,932 0/0:49,20:69:55.69:0,56,993 0/0:30,26:56:24.54:0,25,607 0/1:44,30:74:5.82:6,0,724 0/1:12,13:25:51.29:51,0,310 0/0:16,10:26:33.04:0,33,375 0/1:11,16:27:99:107,0,215 0/1:14,12:26:3.80:4,0,219 0/0:13,2:15:15.01:0,15,150 0/1:16,15:31:46.80:47,0,313 0/0:56,35:93:26.89:0,27,1398 0/1:13,10:23:7.32:7,0,229 0/0:20,10:31:16.43:0,16,465 0/0:20,3:23:42.11:0,42,496 0/1:26,23:50:70.70:71,0,599 0/0:51,25:76:65.72:0,66,1096 0/1:32,27:60:92.83:93,0,703 0/0:26,17:43:28.38:0,28,550 0/1:39,37:77:29.39:29,0,714 0/0:45,1:46:78.17:0,78,933 0/0:23,16:40:16.38:0,16,389 0/0:34,32:66:69.16:0,69,829 0/0:5,8:13:9.03:0,9,106 0/0:20,17:37:5.16:0,5,458 0/0:13,6:19:0.37:0,0,225 0/1:14,16:30:67.60:68,0,277 0/1:18,10:28:14.22:14,0,370 0/0:45,18:63:62.81:0,63,1048 0/0:29,14:43:1.72:3,0,492 0/0:24,3:27:54.12:0,54,609 0/1:19,14:33:13.97:14,0,345 0/1:25,11:36:17.79:18,0,503 0/1:27,26:53:4.74:5,0,687 0/0:20,8:28:45.11:0,45,515 0/0:21,2:23:45.13:0,45,541 0/1:20,19:39:93.76:94,0,413 0/0:21,15:36:45.05:0,45,482 0/0:22,4:26:8.37:0,8,311 15 77021044 . G GC 1450.50 . 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T C 15988.69 . AC=10;AF=0.119;AN=84;BaseQRankSum=13.395;DP=4173;DS;Dels=0.00;FS=0.201;HRun=0;HaplotypeScore=1.5221;InbreedingCoeff=-0.1351;MQ=59.42;MQ0=0;MQRankSum=-0.353;QD=14.75;ReadPosRankSum=2.978 GT:AD:DP:GQ:PL 0/0:80,0:80:99:0,241,2905 0/1:42,47:89:99:1416,0,1264 0/1:43,45:88:99:1352,0,1249 0/1:62,70:132:99:2085,0,1841 0/1:66,59:125:99:1997,0,1962 0/0:132,0:132:99:0,376,4767 0/0:144,0:144:99:0,403,5139 0/0:147,0:147:99:0,403,5118 0/0:91,0:91:99:0,265,3191 0/1:42,37:79:99:1137,0,1198 0/0:70,0:70:99:0,196,2376 0/0:81,0:81:99:0,235,2853 0/0:71,0:71:99:0,193,2357 0/0:80,0:80:99:0,232,2837 0/0:178,0:178:99:0,506,6209 0/0:62,1:63:99:0,153,2229 0/0:95,0:95:99:0,256,3133 0/0:92,0:92:99:0,265,3237 0/0:136,0:136:99:0,379,4761 0/0:154,0:154:99:0,421,5203 0/0:118,0:118:99:0,334,4152 0/1:55,35:90:99:988,0,1619 0/0:126,0:126:99:0,361,4400 0/1:72,63:135:99:2024,0,2069 0/1:59,51:110:99:1593,0,1821 0/0:82,0:82:99:0,229,2865 0/0:74,0:74:99:0,211,2570 0/1:50,44:95:99:1209,0,1467 0/0:71,0:71:99:0,211,2568 0/0:71,0:71:99:0,199,2407 0/0:75,0:75:99:0,214,2663 0/1:63,78:141:99:2188,0,1602 0/0:91,0:91:99:0,253,3100 0/0:80,0:80:99:0,229,2800 0/0:69,0:69:99:0,193,2366 0/0:102,0:102:99:0,289,3479 0/0:123,0:123:99:0,346,4267 0/0:79,0:79:99:0,229,2762 0/0:81,0:81:99:0,232,2817 0/0:76,0:76:99:0,214,2609 0/0:82,0:82:99:0,238,2897 0/0:75,0:75:99:0,214,2560 15 77329417 . A G 578.31 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.155;DP=1799;Dels=0.00;FS=4.219;HRun=1;HaplotypeScore=0.8903;InbreedingCoeff=-0.0120;MQ=58.82;MQ0=0;MQRankSum=-0.595;QD=16.52;ReadPosRankSum=0.342 GT:AD:DP:GQ:PL 0/0:31,0:31:87.25:0,87,1015 0/0:28,0:29:72.22:0,72,868 0/1:13,22:35:99:625,0,330 0/0:66,0:66:99:0,162,2021 0/0:76,0:76:99:0,196,2352 0/0:58,0:58:99:0,141,1756 0/0:34,0:34:84.25:0,84,1061 0/0:50,0:50:99:0,120,1462 0/0:31,0:32:81.24:0,81,984 0/0:19,0:19:54.16:0,54,633 0/0:35,0:35:93.27:0,93,1118 0/0:37,0:37:96.29:0,96,1155 0/0:26,0:26:72.18:0,72,835 0/0:16,0:16:42.11:0,42,473 0/0:115,2:118:99:0,286,3434 0/0:35,0:35:99:0,99,1163 0/0:35,0:36:90.27:0,90,1098 0/0:23,0:23:63.19:0,63,750 0/0:68,0:68:99:0,181,2203 0/0:83,0:83:99:0,205,2483 0/0:51,0:51:99:0,123,1506 0/0:40,0:41:99:0,108,1272 0/0:83,0:83:99:0,196,2416 0/0:28,0:28:84.24:0,84,996 0/0:56,1:57:99:0,129,1615 0/0:50,0:50:99:0,126,1557 0/0:22,0:22:63.18:0,63,746 0/0:38,0:38:99:0,99,1172 0/0:22,0:22:57.17:0,57,674 0/0:36,0:36:99:0,102,1217 0/0:25,0:25:63.15:0,63,748 0/0:50,1:51:99:0,123,1504 0/0:55,0:55:99:0,138,1683 0/0:30,0:30:84.24:0,84,1007 0/0:41,0:42:99:0,111,1323 0/0:32,0:32:93.27:0,93,1082 0/0:61,0:61:99:0,168,1987 0/0:40,0:40:99:0,99,1217 0/0:28,0:28:72.21:0,72,874 0/0:37,0:37:96.30:0,96,1179 0/0:29,0:29:75.23:0,75,914 0/0:34,0:34:96.28:0,96,1130 15 77450964 . C T 26491.24 . AC=25;AF=0.298;AN=84;BaseQRankSum=-8.251;DP=2499;Dels=0.00;FS=0.154;HRun=1;HaplotypeScore=1.1691;InbreedingCoeff=0.2597;MQ=59.44;MQ0=0;MQRankSum=1.373;QD=22.53;ReadPosRankSum=2.268 GT:AD:DP:GQ:PL 0/1:25,28:53:99:901,0,704 1/1:0,41:41:99:1498,120,0 0/1:23,17:40:99:484,0,710 0/1:48,50:98:99:1449,0,1570 1/1:0,105:105:99:3864,298,0 0/1:35,62:97:99:2087,0,1088 1/1:1,93:94:99:3276,250,0 0/0:87,0:87:99:0,250,3393 1/1:0,37:37:99:1268,102,0 1/1:0,47:47:99:1680,135,0 0/1:24,18:42:99:510,0,761 0/0:60,0:60:99:0,166,2110 0/0:46,1:47:99:0,101,1669 0/1:31,18:49:99:530,0,973 0/0:151,0:151:99:0,391,5057 0/0:28,1:30:52.92:0,53,1037 0/1:25,20:45:99:584,0,827 0/1:20,22:42:99:576,0,625 0/1:36,39:75:99:1074,0,1069 0/0:61,0:61:99:0,172,2199 0/0:76,0:76:99:0,205,2608 0/1:17,22:39:99:660,0,547 0/0:112,0:112:99:0,307,4208 0/1:50,40:90:99:1166,0,1642 1/1:0,91:91:99:3299,256,0 0/0:72,0:72:99:0,202,2719 0/0:34,0:34:93.29:0,93,1178 0/1:13,28:41:99:872,0,348 0/0:27,0:27:78.22:0,78,987 0/0:45,0:45:99:0,129,1662 0/0:38,0:38:99:0,111,1422 0/0:51,0:51:99:0,135,1752 0/0:52,0:52:99:0,138,1761 0/0:48,0:48:99:0,132,1700 0/0:45,1:46:94.62:0,95,1605 0/0:48,0:48:99:0,135,1752 0/0:68,0:68:99:0,196,2450 0/0:47,0:47:99:0,132,1712 0/0:43,0:43:99:0,123,1566 0/0:39,0:39:99:0,117,1482 0/0:41,0:41:99:0,114,1454 0/1:26,24:50:99:713,0,818 15 78471110 . G A 3107.93 . AC=8;AF=0.095;AN=84;BaseQRankSum=-4.207;DP=1274;Dels=0.00;FS=4.886;HRun=0;HaplotypeScore=0.8066;InbreedingCoeff=-0.1039;MQ=58.82;MQ0=0;MQRankSum=1.383;QD=11.95;ReadPosRankSum=-0.304 GT:AD:DP:GQ:PL 0/0:29,0:29:75.20:0,75,913 0/1:16,12:28:99:286,0,379 0/1:14,13:27:99:352,0,358 0/0:71,0:71:99:0,159,2061 0/0:43,0:43:99:0,108,1350 0/0:29,0:29:75.21:0,75,933 0/0:29,0:29:78.23:0,78,975 0/0:43,0:43:99:0,102,1298 0/0:26,0:26:69.18:0,69,815 0/0:23,0:23:57.17:0,57,695 0/0:25,0:25:69.21:0,69,858 0/0:10,0:10:30.09:0,30,356 0/0:15,0:15:39.11:0,39,474 0/0:29,0:29:75.15:0,75,839 0/1:32,39:71:99:977,0,814 0/0:27,0:27:78.22:0,78,934 0/1:3,22:25:22.63:665,0,23 0/0:34,0:34:84.23:0,84,1031 0/0:25,0:26:69.19:0,69,815 0/0:43,0:43:99:0,105,1269 0/1:20,14:35:99:328,0,567 0/1:21,6:27:99:126,0,526 0/0:71,0:72:99:0,171,2165 0/0:32,0:32:66.18:0,66,818 0/0:26,0:27:63.19:0,63,804 0/0:32,0:32:69.20:0,69,899 0/0:14,0:14:39.10:0,39,452 0/0:22,0:22:57.15:0,57,688 0/0:15,0:15:45.14:0,45,547 0/1:15,12:27:99:303,0,407 0/0:25,0:25:66.18:0,66,784 0/0:44,0:44:99:0,111,1302 0/1:10,10:20:99:192,0,308 0/0:20,0:20:54.14:0,54,647 0/0:30,0:30:78.21:0,78,930 0/0:30,0:30:81.22:0,81,973 0/0:37,1:38:73.63:0,74,1151 0/0:22,0:23:57.14:0,57,680 0/0:29,0:29:84.22:0,84,987 0/0:15,0:15:33.10:0,33,421 0/0:19,0:19:51.16:0,51,644 0/0:25,0:25:63.19:0,63,781 15 78474461 . G C 30.96 . AC=5;AF=0.060;AN=84;BaseQRankSum=-9.469;DP=1259;Dels=0.00;FS=173.471;HRun=1;HaplotypeScore=0.8026;InbreedingCoeff=-0.0754;MQ=57.72;MQ0=2;MQRankSum=1.728;QD=0.22;ReadPosRankSum=-6.191 GT:AD:DP:GQ:PL 0/0:12,5:17:2.51:0,3,347 0/0:17,4:21:39.10:0,39,447 0/0:18,8:26:3.47:0,3,334 0/0:49,7:56:99:0,108,1321 0/0:40,14:54:58.03:0,58,1125 0/0:26,9:35:60.19:0,60,771 0/0:26,10:36:48.15:0,48,630 0/0:24,7:31:57.15:0,57,712 0/1:20,6:26:13.51:14,0,545 0/0:26,6:32:39.58:0,40,769 0/0:18,9:27:39.10:0,39,465 0/0:17,8:25:39.09:0,39,463 0/0:4,5:9:9.03:0,9,111 0/0:12,3:15:27.09:0,27,346 0/0:35,4:39:84.24:0,84,1002 0/0:29,13:42:39.06:0,39,820 0/0:20,1:21:51.10:0,51,583 0/1:19,8:27:23.56:24,0,405 0/0:22,4:26:29.57:0,30,638 0/0:35,4:39:81.22:0,81,971 0/0:25,8:33:66.14:0,66,759 0/0:21,11:32:45.11:0,45,545 0/0:47,24:71:37.61:0,38,1330 0/0:18,10:28:45.13:0,45,575 0/0:27,17:44:71.82:0,72,922 0/0:23,8:31:51.16:0,51,659 0/0:11,9:20:27.07:0,27,318 0/0:28,7:35:68.88:0,69,820 0/0:12,3:15:30.06:0,30,339 0/1:21,5:26:38.17:38,0,523 0/0:25,6:31:57.15:0,57,668 0/0:34,5:39:50.54:0,51,895 0/0:22,5:27:45.67:0,46,592 0/0:21,10:31:48.14:0,48,576 0/1:21,11:32:13.54:14,0,512 0/0:16,8:24:39.12:0,39,465 0/1:18,9:27:34.68:35,0,455 0/0:15,8:23:11.53:0,12,429 0/0:13,6:19:8.44:0,8,370 0/0:14,8:22:39.10:0,39,472 0/0:18,6:25:48.14:0,48,588 0/0:15,5:20:33.07:0,33,386 15 78474461 . G GC 23.27 . AC=4;AF=0.048;AN=84;BaseQRankSum=4.686;DP=1375;FS=322.787;HRun=1;HaplotypeScore=148.6109;InbreedingCoeff=-0.0869;MQ=57.40;MQ0=2;MQRankSum=-0.400;QD=0.20;ReadPosRankSum=-12.329 GT:AD:DP:GQ:PL 0/0:18,0:18:7.14:0,7,355 0/0:23,0:23:30.66:0,31,440 0/1:28,0:28:21.94:22,0,390 0/0:56,14:70:50.62:0,51,1023 0/0:56,0:56:56.45:0,56,1030 0/0:39,0:37:47.70:0,48,655 0/0:39,0:36:47.72:0,48,573 0/0:32,0:32:51.07:0,51,617 0/0:29,0:29:1.29:5,0,564 0/0:33,0:33:32.20:0,32,658 0/0:28,0:28:26.12:0,26,507 0/0:27,0:27:35.06:0,35,438 0/0:10,0:10:9.03:0,9,117 0/0:16,0:16:27.08:0,27,342 0/0:44,15:58:9.35:0,9,713 0/0:45,0:45:35.58:0,36,857 0/0:21,2:23:42.39:0,42,525 0/1:28,0:28:21.33:21,0,323 0/0:28,0:27:25.17:0,25,540 0/0:44,0:44:65.75:0,66,761 0/0:35,0:35:53.07:0,53,685 0/0:35,0:35:46.55:0,47,637 0/0:80,0:79:23.25:0,23,1152 0/0:29,0:28:39.21:0,39,534 0/0:47,0:46:14.19:0,14,618 0/0:33,0:32:38.36:0,38,564 0/0:19,0:19:21.07:0,21,273 0/0:38,0:38:2.25:0,2,618 0/0:17,0:17:33.06:0,33,401 0/1:29,0:29:33.73:34,0,419 0/0:31,0:31:51.16:0,51,654 0/0:39,0:39:49.99:0,50,867 0/0:27,0:27:33.89:0,34,632 0/0:33,0:33:42.13:0,42,533 0/0:33,0:33:0.58:8,0,474 0/0:26,0:26:33.19:0,33,451 0/1:31,0:31:37.19:37,0,279 0/0:28,0:28:6.32:0,6,290 0/0:20,0:20:9.16:0,9,324 0/0:23,0:23:27.06:0,27,447 0/0:27,0:27:38.70:0,39,452 0/0:20,0:20:24.07:0,24,303 15 78632830 . C G 11283.59 . AC=58;AF=0.690;AN=84;BaseQRankSum=-3.726;DP=563;Dels=0.00;FS=4.321;HRun=0;HaplotypeScore=0.4117;InbreedingCoeff=-0.1167;MQ=58.56;MQ0=0;MQRankSum=0.051;QD=23.22;ReadPosRankSum=-0.117 GT:AD:DP:GQ:PL 1/1:0,8:8:24.07:296,24,0 1/1:0,12:12:27.09:348,27,0 0/1:5,3:8:83.33:83,0,136 0/0:30,0:30:69.22:0,69,924 0/0:30,0:30:78.25:0,78,1055 0/1:6,3:9:94.21:94,0,144 1/1:0,9:9:27.09:364,27,0 0/0:17,0:17:39.13:0,39,523 0/1:3,5:8:89.76:153,0,90 0/1:3,4:7:86.99:124,0,87 0/1:4,5:9:88.43:159,0,88 1/1:0,7:7:21.04:245,21,0 0/1:2,2:4:64.33:65,0,64 1/1:0,10:10:24.08:315,24,0 1/1:0,45:45:99:1381,105,0 0/1:4,6:10:99:190,0,122 1/1:0,11:11:27.09:356,27,0 0/1:2,4:6:59.84:121,0,60 1/1:0,19:19:45.14:568,45,0 0/1:7,13:20:99:368,0,203 0/1:9,4:13:70.62:71,0,311 0/1:5,3:8:93.80:94,0,136 0/1:21,13:34:99:403,0,609 1/1:0,16:16:33.11:460,33,0 1/1:0,17:18:48.15:639,48,0 0/1:6,3:9:86.50:87,0,146 1/1:0,7:7:15.05:183,15,0 1/1:0,10:10:24.08:311,24,0 0/1:4,7:11:99:233,0,121 1/1:0,17:17:48.12:580,48,0 1/1:0,7:7:21.07:274,21,0 0/1:10,13:23:99:364,0,283 0/1:4,9:13:99:265,0,117 0/1:2,3:5:61.33:92,0,61 1/1:0,12:12:27.08:352,27,0 0/1:12,4:16:99:105,0,335 1/1:0,14:14:36.09:428,36,0 0/1:4,6:10:99:165,0,124 1/1:0,7:7:21.04:247,21,0 1/1:0,10:10:24.05:292,24,0 1/1:0,9:9:24.08:306,24,0 0/1:10,5:15:99:105,0,204 15 78764187 . A G 2372.47 . AC=2;AF=0.024;AN=84;BaseQRankSum=8.851;DP=2402;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9589;InbreedingCoeff=-0.0244;MQ=59.48;MQ0=0;MQRankSum=1.505;QD=14.21;ReadPosRankSum=-0.479 GT:AD:DP:GQ:PL 0/0:47,0:48:99:0,138,1675 0/0:51,0:51:99:0,147,1811 0/0:47,0:47:99:0,132,1652 0/0:121,0:121:99:0,337,4235 0/0:113,0:113:99:0,325,4091 0/1:37,31:68:99:982,0,1210 0/0:65,0:66:99:0,190,2436 0/1:49,50:99:99:1453,0,1504 0/0:40,0:40:99:0,114,1369 0/0:40,0:40:99:0,114,1407 0/0:38,0:38:99:0,108,1303 0/0:67,0:67:99:0,187,2337 0/0:50,1:51:99:0,141,1729 0/0:30,0:30:84.26:0,84,1039 0/0:129,0:129:99:0,334,4222 0/0:32,0:32:90.28:0,90,1128 0/0:44,2:46:81.63:0,82,1504 0/0:48,0:48:99:0,141,1746 0/0:53,0:53:99:0,150,1855 0/0:58,0:58:99:0,159,1971 0/0:55,0:55:99:0,159,1941 0/0:32,0:32:90.25:0,90,1108 0/0:99,0:99:99:0,271,3448 0/0:75,0:75:99:0,214,2731 0/0:85,0:85:99:0,238,3061 0/0:92,0:92:99:0,253,3257 0/0:31,0:31:75.23:0,75,942 0/0:42,0:42:99:0,117,1433 0/0:43,0:43:99:0,114,1419 0/0:46,0:46:99:0,135,1665 0/0:62,0:62:99:0,175,2164 0/0:62,0:62:99:0,178,2214 0/0:37,0:37:99:0,99,1236 0/0:34,0:34:99:0,99,1188 0/0:40,0:40:99:0,108,1343 0/0:58,0:58:99:0,159,1960 0/0:42,1:43:99:0,114,1412 0/0:50,0:50:99:0,147,1793 0/0:42,0:42:99:0,117,1436 0/0:44,0:44:99:0,120,1514 0/0:45,0:45:99:0,132,1618 0/0:40,0:40:99:0,114,1425 15 78768553 . T TG 3677.86 . AC=34;AF=0.405;AN=84;BaseQRankSum=-6.557;DP=3503;FS=2988.724;HRun=2;HaplotypeScore=198.2036;InbreedingCoeff=-0.6883;MQ=58.89;MQ0=0;MQRankSum=0.816;QD=1.35;ReadPosRankSum=-25.433 GT:AD:DP:GQ:PL 0/1:57,0:57:99:157,0,765 0/0:70,0:70:41.24:0,41,1463 0/0:53,0:53:37.55:0,38,1088 0/1:161,0:161:99:153,0,2659 0/1:119,0:119:99:154,0,1944 0/1:148,0:145:27.98:28,0,2764 0/1:112,0:109:99:125,0,2060 0/0:159,0:157:4.35:0,4,2576 0/1:67,0:67:47.86:48,0,1160 0/1:39,0:39:45.23:45,0,568 0/1:58,0:58:0.58:1,0,1163 0/1:54,0:54:21.77:22,0,1194 0/0:62,0:62:34.95:0,35,1280 0/1:42,0:42:56.24:56,0,736 0/1:133,85:218:99:586,0,3417 0/1:48,0:48:99:195,0,664 0/1:72,0:72:20.35:20,0,1294 0/1:55,0:55:72.32:72,0,970 0/1:73,0:73:56.91:57,0,1245 0/0:96,0:96:28.59:0,29,1811 0/1:86,0:86:99:152,0,1429 0/1:61,0:61:94.73:95,0,1175 0/1:202,0:202:99:444,0,3418 0/0:122,0:117:2.92:0,0,2146 0/1:145,0:142:50.60:51,0,2619 0/0:154,0:147:71.56:0,72,2498 0/1:46,0:46:22.35:22,0,843 0/1:49,0:49:99:103,0,876 0/1:46,0:46:61.95:62,0,901 0/1:60,0:59:52.01:52,0,1067 0/1:43,0:43:30.30:30,0,780 0/1:93,0:93:13.20:13,0,1599 0/1:43,0:43:80.35:80,0,570 0/1:68,0:68:80.01:80,0,1224 0/1:59,0:59:89.48:89,0,872 0/1:65,0:65:99:111,0,908 0/1:92,0:92:99:113,0,1795 0/1:50,1:51:84.77:85,0,753 0/1:69,0:69:87.83:88,0,1109 0/1:48,0:48:99:104,0,652 0/0:59,0:59:28.16:0,28,1282 0/1:79,0:79:99:184,0,1294 15 78768556 . A G 2275.84 . AC=33;AF=0.393;AN=84;BaseQRankSum=-23.988;DP=3271;Dels=0.00;FS=3200.000;HRun=2;HaplotypeScore=2.8486;InbreedingCoeff=-0.6495;MQ=59.17;MQ0=0;MQRankSum=-0.340;QD=1.02;ReadPosRankSum=-23.977 GT:AD:DP:GQ:PL 0/1:23,28:51:99:130,0,604 0/1:42,23:65:40.85:41,0,1362 0/0:34,17:51:46.45:0,46,1086 0/1:83,69:152:48.63:49,0,2566 0/1:62,52:114:60.10:60,0,1916 0/0:93,57:150:49.13:0,49,3160 0/1:67,43:110:47.34:47,0,2111 0/0:88,67:155:99:0,133,2910 0/1:39,24:63:38.96:39,0,1163 0/1:16,15:31:66.69:67,0,507 0/1:39,18:57:14.72:15,0,1240 0/0:36,15:51:4.96:0,5,1078 0/1:37,21:58:7.55:8,0,1138 0/1:24,16:40:79.09:79,0,750 0/0:128,30:158:99:0,328,3849 0/1:21,21:42:99:203,0,542 0/0:42,25:67:5.38:0,5,1254 0/1:31,20:51:99:103,0,982 0/1:41,28:69:25.01:25,0,1223 0/1:56,37:94:21.45:21,0,1637 0/1:49,29:78:89.56:90,0,1392 0/1:36,23:59:12.05:12,0,1021 0/1:108,91:199:99:141,0,3047 0/0:75,42:117:43.64:0,44,2334 0/0:83,57:140:47.19:0,47,2599 0/0:82,59:141:81.76:0,82,2668 0/1:27,15:42:10.42:10,0,831 0/1:30,19:49:99:100,0,906 0/1:28,16:44:86.19:86,0,843 0/1:31,25:56:54.13:54,0,986 0/1:24,18:42:48.48:48,0,800 0/1:50,35:85:34.28:34,0,1540 0/1:19,20:39:99:119,0,537 0/1:40,22:62:58.55:59,0,1192 0/1:30,22:52:38.94:39,0,926 0/1:27,34:61:99:139,0,771 0/1:55,31:86:51.62:52,0,1678 0/1:28,22:50:99:119,0,836 0/1:34,30:64:51.66:52,0,1055 0/1:19,24:43:99:191,0,610 0/1:37,20:58:12.17:12,0,1216 0/1:40,35:75:99:209,0,1180 15 78837262 . G A 1156.14 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.397;DP=3261;Dels=0.00;FS=6.651;HRun=0;HaplotypeScore=1.4098;InbreedingCoeff=-0.0244;MQ=59.50;MQ0=0;MQRankSum=0.617;QD=8.89;ReadPosRankSum=-1.995 GT:AD:DP:GQ:PL 0/1:35,34:69:99:889,0,885 0/1:47,14:61:99:329,0,1295 0/0:69,0:69:99:0,187,2318 0/0:134,0:135:99:0,325,4356 0/0:141,0:141:99:0,361,4794 0/0:126,0:126:99:0,322,4274 0/0:111,0:111:99:0,265,3618 0/0:109,0:109:99:0,292,3826 0/0:73,0:73:99:0,193,2363 0/0:50,0:50:99:0,132,1626 0/0:52,0:52:99:0,141,1736 0/0:47,0:47:99:0,129,1574 0/0:59,0:59:99:0,156,1939 0/0:67,0:67:99:0,178,2197 0/0:197,0:198:99:0,490,6115 0/0:46,0:46:99:0,135,1612 0/0:63,1:64:99:0,127,1941 0/0:66,0:66:99:0,175,2165 0/0:78,0:78:99:0,199,2400 0/0:92,0:92:99:0,232,2941 0/0:83,0:85:99:0,214,2662 0/0:52,0:52:99:0,129,1591 0/0:156,0:156:99:0,400,5343 0/0:92,0:92:99:0,253,3335 0/0:125,0:126:99:0,322,4283 0/0:121,0:121:99:0,310,4091 0/0:52,0:52:99:0,135,1661 0/0:55,0:55:99:0,144,1792 0/0:63,0:63:99:0,168,2050 0/0:52,0:53:99:0,144,1729 0/0:40,0:40:99:0,111,1341 0/0:70,0:70:99:0,162,2065 0/0:46,0:46:99:0,114,1440 0/0:55,0:55:99:0,147,1835 0/0:53,0:53:99:0,129,1600 0/0:62,0:62:99:0,175,2124 0/0:54,0:54:99:0,132,1651 0/0:71,0:71:99:0,166,2094 0/0:54,0:54:99:0,141,1735 0/0:64,0:64:99:0,175,2123 0/0:71,0:71:99:0,187,2306 0/0:52,1:53:99:0,101,1609 15 78923505 . G A 698.96 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.995;DP=2906;Dels=0.00;FS=1.528;HRun=0;HaplotypeScore=1.7107;InbreedingCoeff=-0.0120;MQ=59.22;MQ0=0;MQRankSum=1.476;QD=12.26;ReadPosRankSum=-1.128 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,159,1972 0/0:70,0:70:99:0,190,2334 0/0:49,1:50:99:0,138,1687 0/0:132,0:132:99:0,364,4728 0/0:103,0:103:99:0,277,3670 0/0:92,0:92:99:0,250,3223 0/0:74,0:74:99:0,205,2682 0/0:67,0:67:99:0,181,2400 0/0:69,0:69:99:0,196,2379 0/0:36,0:36:96.30:0,96,1180 0/0:68,0:68:99:0,184,2269 0/0:53,0:53:99:0,159,1916 0/0:52,0:52:99:0,135,1669 0/0:68,0:68:99:0,190,2366 0/0:167,0:168:99:0,445,5388 0/0:49,0:49:99:0,144,1773 0/0:61,0:61:99:0,169,2055 0/0:42,0:42:99:0,117,1416 0/0:69,0:69:99:0,190,2228 0/0:105,0:105:99:0,295,3615 0/0:81,1:82:99:0,200,2630 0/0:58,0:58:99:0,172,2100 0/0:132,0:132:99:0,355,4717 0/0:59,0:59:99:0,172,2200 0/0:90,0:90:99:0,250,3248 0/0:69,0:69:99:0,172,2269 0/0:58,0:58:99:0,169,2061 0/0:61,0:61:99:0,168,2026 0/0:49,0:49:99:0,144,1762 0/0:44,0:44:99:0,126,1535 0/0:49,0:49:99:0,138,1702 0/0:65,0:65:99:0,178,2220 0/0:61,0:61:99:0,162,2004 0/0:59,0:59:99:0,172,2076 0/1:30,27:57:99:745,0,895 0/0:68,0:68:99:0,190,2311 0/0:69,0:69:99:0,184,2166 0/0:46,0:46:99:0,138,1666 0/0:62,0:62:99:0,181,2174 0/0:69,0:69:99:0,187,2264 0/0:56,0:56:99:0,144,1748 0/0:57,0:57:99:0,165,2032 15 79056068 . C A 720.11 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.973;DP=645;Dels=0.00;FS=12.354;HRun=0;HaplotypeScore=0.4530;InbreedingCoeff=-0.0297;MQ=53.64;MQ0=1;MQRankSum=1.393;QD=13.09;ReadPosRankSum=0.686 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,167 0/0:4,0:4:12.03:0,12,135 0/0:8,0:8:18.04:0,18,205 0/0:45,0:45:99:0,108,1326 0/0:42,0:42:99:0,111,1295 0/0:28,0:28:72.22:0,72,885 0/0:17,0:17:48.13:0,48,556 0/0:17,0:17:48.12:0,48,582 0/0:11,0:11:33.06:0,33,360 0/0:5,0:5:12:0,12,126 0/0:9,0:9:24.06:0,24,259 0/0:10,0:10:30.05:0,30,321 0/0:6,0:6:18.05:0,18,197 0/0:10,0:10:30.07:0,30,329 0/0:37,0:37:99:0,102,1101 0/0:14,0:14:39.10:0,39,441 0/0:11,0:11:30.08:0,30,343 0/0:11,0:11:33.06:0,33,358 0/0:13,0:14:36.08:0,36,383 0/0:17,0:17:42.08:0,42,466 0/0:23,0:23:54.14:0,54,605 0/0:16,0:16:48.11:0,48,508 0/0:57,0:57:99:0,153,1840 0/1:14,13:27:99:369,0,402 0/1:13,15:28:99:413,0,315 0/0:16,0:16:39.10:0,39,459 0/0:6,0:6:18.04:0,18,202 0/0:7,0:7:15.04:0,15,171 0/0:7,0:7:21.05:0,21,226 0/0:6,0:6:15.04:0,15,178 0/0:15,0:15:36.10:0,36,422 0/0:16,0:16:30.08:0,30,370 0/0:6,0:6:18.02:0,18,184 0/0:12,0:12:36.05:0,36,372 0/0:10,0:10:27.04:0,27,298 0/0:9,0:9:27:0,27,257 0/0:23,0:23:66.08:0,66,685 0/0:10,0:10:30.04:0,30,304 0/0:8,0:8:21.03:0,21,221 0/0:9,0:9:24.04:0,24,239 0/0:3,0:3:9.02:0,9,97 0/0:10,0:10:24.03:0,24,247 15 79056122 . G A 210.81 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.460;DP=334;Dels=0.00;FS=6.772;HRun=0;HaplotypeScore=0.2880;InbreedingCoeff=0.4212;MQ=53.46;MQ0=5;MQRankSum=3.355;QD=15.06;ReadPosRankSum=0.916 GT:AD:DP:GQ:PL 0/0:3,0:3:9.02:0,9,96 0/0:9,0:9:21.06:0,21,257 0/0:4,0:4:12.03:0,12,143 0/0:17,0:17:45.14:0,45,570 0/0:11,0:11:33.08:0,33,380 0/0:12,0:12:36.08:0,36,436 0/0:11,0:11:33.09:0,33,396 0/0:14,0:14:39.11:0,39,474 0/0:6,0:6:18.05:0,18,210 0/0:2,0:2:6.02:0,6,65 0/0:5,0:5:15.04:0,15,164 0/0:9,0:9:27.06:0,27,302 0/0:3,0:3:9.02:0,9,95 0/0:10,0:10:27.07:0,27,300 0/0:12,0:12:24.06:0,24,266 0/0:12,0:12:33.05:0,33,360 0/0:4,0:4:9.02:0,9,98 0/0:9,0:9:24.07:0,24,290 0/0:9,0:9:18.04:0,18,200 0/0:8,0:8:18.06:0,18,235 0/0:7,0:7:15.04:0,15,178 0/0:7,0:7:21.06:0,21,256 0/0:25,1:26:37.67:0,38,833 0/0:10,0:11:27.08:0,27,343 0/0:11,0:11:27.08:0,27,340 0/0:8,0:8:18.04:0,18,200 0/0:5,0:5:15.04:0,15,166 0/0:4,0:4:12.01:0,12,118 0/0:5,0:5:15.02:0,15,160 0/0:5,0:5:15.04:0,15,168 0/0:10,0:10:30.08:0,30,328 0/0:4,0:4:12.03:0,12,136 0/0:9,0:9:24.05:0,24,268 0/0:5,0:5:12.03:0,12,148 0/0:8,0:8:24.04:0,24,257 0/0:8,0:8:24.06:0,24,261 0/0:3,0:3:9.02:0,9,102 0/0:2,0:2:6.02:0,6,71 0/0:6,0:6:15.02:0,15,160 0/1:4,3:7:61.97:62,0,100 1/1:0,7:7:21.04:228,21,0 0/0:6,0:6:15.01:0,15,147 15 79307680 . C T 1338.36 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.260;DP=2969;Dels=0.00;FS=8.169;HRun=0;HaplotypeScore=1.5292;InbreedingCoeff=-0.0244;MQ=59.39;MQ0=0;MQRankSum=-0.057;QD=11.74;ReadPosRankSum=-0.584 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,120,1459 0/0:66,0:66:99:0,174,2121 0/0:52,0:53:99:0,147,1739 0/0:139,0:139:99:0,361,4762 0/0:134,0:134:99:0,337,4436 0/0:118,0:118:99:0,301,3998 0/0:82,0:83:99:0,220,2827 0/0:94,0:94:99:0,253,3311 0/0:55,1:56:99:0,128,1868 0/0:54,0:54:99:0,144,1740 0/0:67,0:67:99:0,172,2120 0/0:50,0:50:99:0,135,1676 0/0:52,0:52:99:0,138,1712 0/0:51,0:51:99:0,138,1662 0/0:180,0:180:99:0,481,5926 0/0:45,0:45:99:0,123,1509 0/1:31,27:58:99:766,0,847 0/0:45,0:45:99:0,129,1509 0/0:73,0:73:99:0,196,2383 0/0:81,0:81:99:0,211,2574 0/0:73,0:73:99:0,187,2279 0/0:36,0:36:99:0,99,1204 0/0:124,0:124:99:0,325,4347 0/0:107,0:107:99:0,280,3671 0/0:114,0:114:99:0,295,3881 0/0:94,0:94:99:0,238,3120 0/0:31,0:31:90.27:0,90,1096 0/0:56,1:57:99:0,128,1747 0/0:55,0:55:99:0,141,1683 0/0:62,0:62:99:0,159,1975 0/0:53,0:53:99:0,150,1792 0/1:29,26:56:99:635,0,819 0/0:62,0:62:99:0,147,1817 0/0:59,0:59:99:0,156,1876 0/0:60,0:60:99:0,168,2041 0/0:68,0:68:99:0,190,2293 0/0:56,0:56:99:0,147,1785 0/0:58,0:58:99:0,168,1935 0/0:51,1:52:99:0,122,1773 0/0:53,0:53:99:0,150,1823 0/0:39,0:39:99:0,111,1326 0/0:58,0:58:99:0,156,1923 15 79382609 . A G 55.05 . 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G T 2385.20 . 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G A 1180.76 . 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G A 89689.27 . 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G A 1464.70 . 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T C 7358.32 . 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G A 857.70 . 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G A 7425.44 . AC=3;AF=0.036;AN=84;BaseQRankSum=-11.211;DP=6984;DS;Dels=0.00;FS=16.862;HRun=0;HaplotypeScore=2.8618;InbreedingCoeff=-0.0370;MQ=59.39;MQ0=0;MQRankSum=1.348;QD=13.07;ReadPosRankSum=1.341 GT:AD:DP:GQ:PL 0/0:166,0:166:99:0,439,5573 0/0:121,0:121:99:0,331,4191 0/0:124,0:124:99:0,343,4356 0/0:246,0:246:99:0,638,8674 0/0:243,0:243:99:0,635,8601 0/1:115,106:221:99:2743,0,3223 0/0:197,0:197:99:0,509,6908 0/1:100,90:190:99:2429,0,3001 0/0:144,0:144:99:0,385,4904 0/0:136,0:136:99:0,349,4475 0/0:134,0:134:99:0,355,4511 0/0:124,0:124:99:0,349,4358 0/0:126,0:126:99:0,313,4023 0/1:77,80:157:99:2253,0,2237 0/0:221,0:222:99:0,602,7535 0/0:93,0:93:99:0,247,3085 0/0:155,0:155:99:0,415,5281 0/0:109,0:109:99:0,286,3668 0/0:238,0:238:99:0,614,7726 0/0:242,0:242:99:0,635,8102 0/0:236,0:237:99:0,626,7964 0/0:154,0:154:99:0,421,5308 0/0:250,0:250:99:0,641,8751 0/0:162,0:163:99:0,415,5664 0/0:207,0:207:99:0,518,7006 0/0:161,0:161:99:0,406,5562 0/0:129,0:129:99:0,358,4525 0/0:126,0:126:99:0,343,4343 0/0:109,0:110:99:0,289,3642 0/0:145,0:145:99:0,382,4882 0/0:116,0:116:99:0,331,4160 0/0:250,0:250:99:0,647,8298 0/0:184,0:184:99:0,491,6252 0/0:149,0:149:99:0,391,4990 0/0:139,0:139:99:0,385,4832 0/0:153,0:153:99:0,421,5327 0/0:207,0:207:99:0,533,6708 0/0:136,0:136:99:0,346,4417 0/0:139,0:140:99:0,367,4653 0/0:160,0:160:99:0,427,5423 0/0:125,0:125:99:0,340,4322 0/0:155,0:155:99:0,412,5267 15 81172064 . G A 1779.04 . AC=2;AF=0.024;AN=84;BaseQRankSum=-9.265;DP=2619;Dels=0.00;FS=9.130;HRun=0;HaplotypeScore=1.3348;InbreedingCoeff=-0.0244;MQ=59.14;MQ0=0;MQRankSum=-0.032;QD=17.97;ReadPosRankSum=-0.531 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,163,2048 0/0:51,0:51:99:0,138,1756 0/0:46,0:46:99:0,135,1667 0/0:141,0:141:99:0,379,5070 0/0:93,0:93:99:0,256,3483 0/0:93,0:93:99:0,259,3519 0/0:93,0:93:99:0,262,3531 0/0:80,0:80:99:0,220,2947 0/0:53,0:53:99:0,141,1808 0/0:40,0:40:99:0,108,1357 0/0:36,0:36:99:0,99,1247 0/0:52,0:52:99:0,141,1793 0/0:44,0:44:99:0,114,1441 0/0:35,0:35:99:0,99,1262 0/0:217,0:217:99:0,596,7645 0/0:45,0:45:99:0,126,1577 0/0:40,0:40:99:0,120,1524 0/0:57,0:57:99:0,166,2064 0/0:76,0:77:99:0,211,2704 0/0:83,0:83:99:0,229,2875 0/0:59,0:59:99:0,166,2105 0/0:34,0:34:99:0,99,1246 0/0:118,0:118:99:0,331,4493 0/0:77,0:77:99:0,220,2972 0/0:76,1:77:99:0,217,2902 0/0:81,0:81:99:0,217,2924 0/0:29,0:29:78.24:0,78,976 0/0:53,0:53:99:0,153,1950 0/0:33,0:33:93.29:0,93,1170 0/0:61,0:61:99:0,166,2081 0/0:32,0:32:90.29:0,90,1162 0/0:71,0:72:99:0,184,2330 0/0:35,0:35:96.30:0,96,1223 0/0:28,0:28:81.25:0,81,1012 0/0:45,0:45:99:0,117,1511 0/0:46,0:46:99:0,132,1676 0/0:76,0:76:99:0,214,2708 0/0:55,0:55:99:0,159,1995 0/0:40,0:40:99:0,111,1403 0/1:25,39:64:99:1147,0,708 0/0:36,0:36:99:0,99,1244 0/1:12,23:35:99:694,0,348 15 81173476 . C T 755.95 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.192;DP=5420;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.2984;InbreedingCoeff=-0.0120;MQ=59.45;MQ0=1;MQRankSum=0.309;QD=10.96;ReadPosRankSum=1.107 GT:AD:DP:GQ:PL 0/0:83,0:83:99:0,238,2720 0/0:104,0:104:99:0,262,3087 0/0:103,0:103:99:0,268,3071 0/0:196,0:196:99:0,518,6396 0/0:215,0:215:99:0,569,7130 0/0:206,0:206:99:0,542,6737 0/0:186,0:186:99:0,469,5903 0/0:196,0:196:99:0,521,6433 0/0:95,0:95:99:0,259,2983 0/0:84,0:84:99:0,232,2614 0/0:85,0:85:99:0,226,2654 0/0:95,0:95:99:0,259,2935 0/1:39,30:69:99:802,0,1002 0/0:85,0:85:99:0,229,2677 0/0:236,0:236:99:0,641,7397 0/0:88,0:88:99:0,259,2887 0/0:88,0:88:99:0,247,2776 0/0:93,0:93:99:0,256,2879 0/0:192,0:193:99:0,493,5681 0/0:182,0:182:99:0,457,5393 0/0:189,0:189:99:0,478,5603 0/0:112,0:112:99:0,307,3470 0/0:227,2:229:99:0,563,7491 0/0:187,0:187:99:0,481,6063 0/0:210,0:211:99:0,536,6812 0/0:168,0:168:99:0,445,5549 0/0:65,0:65:99:0,177,2035 0/0:115,0:115:99:0,307,3516 0/0:99,0:99:99:0,259,3041 0/0:90,0:90:99:0,250,2832 0/0:74,0:74:99:0,199,2317 0/0:158,0:158:99:0,400,4736 0/0:101,0:101:99:0,268,3090 0/0:100,0:100:99:0,274,3144 0/0:87,0:87:99:0,235,2712 0/0:114,0:115:99:0,304,3492 0/0:182,0:182:99:0,457,5315 0/0:91,0:91:99:0,250,2817 0/0:69,0:69:99:0,193,2204 0/0:108,0:108:99:0,286,3275 0/0:93,0:93:99:0,247,2870 0/0:95,0:95:99:0,262,2984 15 81188403 . T G 269.38 . AC=6;AF=0.071;AN=84;BaseQRankSum=-16.563;DP=3343;DS;Dels=0.00;FS=3108.394;HRun=2;HaplotypeScore=3.6243;InbreedingCoeff=-0.0900;MQ=59.36;MQ0=0;MQRankSum=0.542;QD=0.73;ReadPosRankSum=-21.375 GT:AD:DP:GQ:PL 0/0:55,16:71:97.38:0,97,1794 0/0:47,13:60:12.39:0,12,1453 0/0:50,10:60:94.65:0,95,1581 0/0:145,25:170:99:0,352,4706 0/0:130,25:155:99:0,291,4421 0/0:84,23:107:99:0,213,2812 0/0:79,19:98:99:0,139,2626 0/0:98,11:109:99:0,236,3293 0/1:49,14:63:26.37:26,0,1533 0/0:40,10:50:96.65:0,97,1336 0/0:50,6:56:99:0,149,1692 0/0:50,13:63:82.65:0,83,1579 0/1:40,18:58:99:113,0,1167 0/0:39,7:46:34.14:0,34,1274 0/0:160,39:199:99:0,327,5123 0/0:41,13:55:9.33:0,9,1241 0/0:40,14:55:28.86:0,29,1211 0/1:49,15:64:48.07:48,0,1450 0/0:71,11:82:24.19:0,24,2288 0/0:59,26:85:99:0,117,1901 0/0:61,17:78:89.90:0,90,2002 0/0:40,11:51:7.74:0,8,1171 0/0:141,36:178:99:0,186,4380 0/0:85,25:110:99:0,124,2845 0/0:91,12:103:99:0,265,3082 0/0:70,11:81:99:0,107,2305 0/0:38,15:53:18.40:0,18,1179 0/1:52,20:72:41.09:41,0,1637 0/0:60,16:76:99:0,106,1889 0/1:41,15:56:79.61:80,0,1229 0/0:39,10:49:55.13:0,55,1266 0/0:60,30:90:81.80:0,82,1822 0/0:39,7:46:60.31:0,60,1313 0/0:49,7:57:99:0,138,1634 0/0:58,12:70:34.86:0,35,1879 0/0:57,15:72:68.17:0,68,1813 0/0:75,19:94:92.42:0,92,2343 0/1:42,15:57:65.92:66,0,1289 0/0:47,9:56:62.80:0,63,1534 0/0:45,12:57:52.82:0,53,1441 0/0:48,17:65:2.11:2,0,1418 0/0:51,15:66:42.15:0,42,1624 15 81230301 . T A 1007.96 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.518;DP=1166;Dels=0.00;FS=2.393;HRun=1;HaplotypeScore=0.3644;InbreedingCoeff=-0.0244;MQ=59.02;MQ0=0;MQRankSum=-0.603;QD=12.60;ReadPosRankSum=1.395 GT:AD:DP:GQ:PL 0/0:17,0:17:48.14:0,48,575 0/0:17,0:17:39.12:0,39,481 0/0:20,0:20:51.13:0,51,611 0/1:25,17:42:99:465,0,715 0/1:15,23:38:99:606,0,397 0/0:43,0:43:99:0,117,1435 0/0:29,0:29:81.25:0,81,1000 0/0:24,0:24:66.20:0,66,795 0/0:19,0:19:51.15:0,51,612 0/0:27,0:27:72.21:0,72,866 0/0:24,0:24:66.20:0,66,797 0/0:22,0:22:60.16:0,60,707 0/0:27,0:27:69.20:0,69,831 0/0:21,0:21:57.17:0,57,694 0/0:83,0:83:99:0,214,2578 0/0:21,0:21:60.16:0,60,693 0/0:24,0:24:60.18:0,60,723 0/0:18,0:18:48.14:0,48,564 0/0:45,0:45:99:0,117,1413 0/0:47,0:47:99:0,126,1501 0/0:44,0:44:99:0,108,1336 0/0:31,0:31:84.24:0,84,1004 0/0:59,0:59:99:0,153,1837 0/0:25,0:25:69.21:0,69,837 0/0:32,1:33:84.25:0,84,1020 0/0:20,0:20:54.16:0,54,654 0/0:20,0:20:51.15:0,51,628 0/0:17,0:17:51.15:0,51,599 0/0:19,0:19:45.12:0,45,534 0/0:18,0:18:48.11:0,48,562 0/0:17,0:17:48.14:0,48,564 0/0:25,0:25:69.20:0,69,831 0/0:25,0:25:72.19:0,72,833 0/0:24,0:24:66.18:0,66,793 0/0:19,0:19:57.17:0,57,676 0/0:24,0:24:66.18:0,66,780 0/0:30,0:30:81.23:0,81,970 0/0:16,0:16:42.11:0,42,493 0/0:16,0:16:48.14:0,48,556 0/0:25,0:25:69.19:0,69,812 0/0:23,0:23:57.17:0,57,699 0/0:28,0:28:75.21:0,75,888 15 81234361 . G C 377.03 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.017;DP=1570;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.9444;InbreedingCoeff=-0.0120;MQ=59.15;MQ0=1;MQRankSum=1.094;QD=11.78;ReadPosRankSum=0.671 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,120,1516 0/0:21,0:21:51.16:0,51,655 0/0:37,0:37:99:0,108,1341 0/0:53,0:53:99:0,141,1893 0/0:44,0:44:99:0,120,1619 0/0:38,0:38:99:0,111,1466 0/0:33,0:33:96.31:0,96,1291 0/0:32,0:32:78.26:0,78,1077 0/0:35,0:35:99:0,102,1275 0/0:35,0:35:99:0,102,1259 0/0:23,0:23:66.21:0,66,841 0/0:38,0:38:99:0,105,1342 0/0:24,0:24:66.18:0,66,822 0/0:38,0:38:99:0,111,1417 0/0:103,0:103:99:0,277,3491 0/0:33,0:33:93.30:0,93,1182 0/0:34,0:34:93.29:0,93,1176 0/0:30,0:30:84.27:0,84,1064 0/0:55,0:55:99:0,138,1777 0/0:55,0:55:99:0,147,1869 0/0:41,0:41:99:0,117,1468 0/0:38,0:39:99:0,108,1366 0/0:37,0:37:96.31:0,96,1299 0/0:22,0:22:63.21:0,63,851 0/0:42,0:42:99:0,108,1442 0/0:32,0:32:93.30:0,93,1228 0/0:18,0:18:48.14:0,48,595 0/0:39,0:39:99:0,111,1401 0/0:27,0:27:78.25:0,78,991 0/0:46,0:46:99:0,129,1636 0/0:32,0:32:90.28:0,90,1140 0/0:41,0:41:99:0,108,1373 0/0:30,0:30:84.26:0,84,1070 0/0:39,0:39:99:0,102,1309 0/0:29,0:29:84.27:0,84,1070 0/1:16,16:32:99:423,0,451 0/0:53,0:53:99:0,153,1929 0/0:24,0:24:66.20:0,66,817 0/0:33,0:33:99:0,99,1222 0/0:41,0:41:99:0,117,1450 0/0:34,0:34:99:0,99,1218 0/0:31,0:31:93.29:0,93,1170 15 81440818 . C T 962.17 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.704;DP=2958;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.6401;InbreedingCoeff=-0.0120;MQ=59.34;MQ0=0;MQRankSum=0.654;QD=12.03;ReadPosRankSum=-0.330 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,111,1327 0/0:56,0:56:99:0,150,1821 0/0:45,0:45:99:0,129,1573 0/0:135,0:135:99:0,382,4894 0/0:116,0:116:99:0,319,4152 0/0:114,0:114:99:0,316,4076 0/0:62,1:64:99:0,132,2083 0/1:35,45:80:99:1008,0,1111 0/0:60,0:60:99:0,171,2098 0/0:62,0:62:99:0,175,2081 0/0:57,0:57:99:0,162,1977 0/0:54,0:54:99:0,144,1757 0/0:43,0:43:99:0,108,1342 0/0:56,0:56:99:0,165,1948 0/0:201,1:204:99:0,554,6534 0/0:43,0:43:99:0,123,1504 0/0:53,0:53:99:0,153,1858 0/0:55,0:55:99:0,156,1884 0/0:70,0:70:99:0,181,2176 0/0:92,0:92:99:0,262,3215 0/0:72,0:73:99:0,196,2331 0/0:51,0:51:99:0,141,1692 0/0:150,0:150:99:0,412,5374 0/0:63,0:63:99:0,175,2246 0/0:104,0:104:99:0,286,3711 0/0:66,0:66:99:0,196,2579 0/0:48,0:48:99:0,138,1669 0/0:60,0:60:99:0,171,2041 0/0:51,0:51:99:0,138,1669 0/0:52,0:52:99:0,147,1777 0/0:60,0:60:99:0,153,1892 0/0:71,0:71:99:0,181,2232 0/0:59,0:59:99:0,156,1859 0/0:61,0:61:99:0,178,2122 0/0:62,0:62:99:0,175,2139 0/0:61,0:61:99:0,165,1986 0/0:74,0:74:99:0,196,2343 0/0:64,0:64:99:0,168,2013 0/0:64,0:64:99:0,165,2002 0/0:51,0:51:99:0,135,1615 0/0:58,0:58:99:0,156,1896 0/0:55,0:55:99:0,162,1922 15 81636267 . C T 74623.68 . AC=72;AF=0.857;AN=84;BaseQRankSum=-15.565;DP=2727;Dels=0.00;FS=0.997;HRun=1;HaplotypeScore=1.0615;InbreedingCoeff=0.0278;MQ=59.21;MQ0=0;MQRankSum=0.818;QD=27.89;ReadPosRankSum=-0.192 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1972,126,0 0/1:34,25:59:99:686,0,1079 0/0:51,0:51:99:0,144,1843 1/1:0,70:70:99:2505,199,0 1/1:0,53:53:99:1799,138,0 1/1:0,69:69:99:2433,184,0 1/1:0,48:48:99:1556,117,0 1/1:0,49:50:99:1606,123,0 0/1:23,33:56:99:938,0,650 0/1:23,29:52:99:821,0,679 1/1:0,52:52:99:1866,153,0 1/1:0,60:60:99:2090,172,0 1/1:1,49:50:99:1667,115,0 1/1:0,58:58:99:2009,162,0 1/1:0,186:186:99:6038,484,0 1/1:0,42:42:99:1451,120,0 1/1:1,49:50:99:1700,105,0 1/1:0,58:58:99:1931,153,0 0/1:62,58:120:99:1608,0,1719 0/1:68,47:115:99:1200,0,1916 0/1:66,32:98:99:832,0,1896 0/1:26,28:55:99:771,0,774 1/1:0,80:80:99:2590,199,0 1/1:0,39:39:99:1378,105,0 1/1:0,47:47:99:1672,129,0 1/1:0,54:54:99:1784,138,0 0/1:19,22:41:99:619,0,524 1/1:0,68:68:99:2225,178,0 0/1:19,24:43:99:732,0,573 1/1:0,56:56:99:1895,153,0 1/1:0,42:42:99:1461,117,0 1/1:0,100:100:99:3425,274,0 0/1:57,49:106:99:1319,0,1606 1/1:0,60:60:99:2070,166,0 1/1:0,53:53:99:1769,141,0 1/1:0,68:68:99:2238,178,0 1/1:0,95:95:99:3038,238,0 1/1:0,56:56:99:1890,153,0 1/1:0,44:44:99:1538,126,0 1/1:1,72:73:99:2497,205,0 1/1:0,33:33:90.26:1113,90,0 1/1:0,57:57:99:1890,150,0 15 81650760 . T C 415.61 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.562;DP=1932;Dels=0.00;FS=2.413;HRun=0;HaplotypeScore=1.1357;InbreedingCoeff=-0.0120;MQ=59.27;MQ0=0;MQRankSum=-0.683;QD=8.66;ReadPosRankSum=2.554 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,117,1385 0/0:40,0:40:99:0,108,1280 0/0:40,0:40:99:0,114,1371 0/0:62,0:62:99:0,184,2147 0/0:40,0:40:99:0,120,1406 0/0:43,0:43:99:0,117,1445 0/0:44,0:44:96.29:0,96,1180 0/0:31,0:31:87.26:0,87,1047 0/0:31,0:32:90.25:0,90,1048 0/0:26,0:26:72.19:0,72,829 0/0:46,0:46:99:0,129,1524 0/0:34,0:34:99:0,99,1187 0/0:37,0:37:99:0,108,1286 0/0:33,0:33:99:0,99,1192 0/0:114,0:114:99:0,307,3552 0/0:39,0:39:99:0,114,1356 0/0:45,0:45:99:0,132,1565 0/0:39,0:39:99:0,114,1333 0/0:76,0:76:99:0,208,2481 0/0:81,0:81:99:0,223,2623 0/0:69,0:69:99:0,180,2112 0/1:29,19:48:99:462,0,767 0/0:37,0:38:99:0,108,1264 0/0:38,0:38:99:0,102,1230 0/0:43,0:43:99:0,123,1489 0/0:30,0:30:87.27:0,87,1064 0/0:32,0:32:96.27:0,96,1136 0/0:30,0:30:87.24:0,87,1017 0/0:39,0:39:99:0,114,1328 0/0:35,0:35:99:0,102,1181 0/0:43,0:44:99:0,126,1534 0/0:75,0:75:99:0,217,2581 0/0:44,0:44:99:0,126,1481 0/0:47,0:48:99:0,129,1569 0/0:40,0:41:99:0,108,1274 0/0:46,0:46:99:0,132,1553 0/0:62,0:63:99:0,165,1956 0/0:42,1:43:90.85:0,91,1382 0/0:46,0:46:99:0,126,1493 0/0:41,0:41:99:0,114,1385 0/0:51,0:51:99:0,144,1718 0/0:43,1:45:99:0,126,1496 15 81666348 . T C 537.52 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.589;DP=1461;Dels=0.00;FS=9.525;HRun=2;HaplotypeScore=0.4529;InbreedingCoeff=-0.0244;MQ=59.15;MQ0=0;MQRankSum=-0.080;QD=8.81;ReadPosRankSum=0.858 GT:AD:DP:GQ:PL 0/0:19,0:19:54.17:0,54,678 0/0:25,0:25:63.20:0,63,812 0/0:18,0:18:42.13:0,42,539 0/0:66,0:66:99:0,169,2201 0/0:48,0:48:99:0,117,1565 0/1:24,16:40:99:444,0,739 0/0:39,0:39:99:0,108,1399 0/1:15,6:21:99:156,0,452 0/0:33,0:33:87.27:0,87,1085 0/0:14,0:14:39.12:0,39,491 0/0:25,0:25:66.20:0,66,811 0/0:29,0:29:75.23:0,75,945 0/0:23,0:23:63.20:0,63,803 0/0:31,0:31:84.26:0,84,1051 0/0:106,0:106:99:0,280,3513 0/0:27,0:27:75.23:0,75,933 0/0:25,0:25:72.23:0,72,901 0/0:24,0:24:69.21:0,69,847 0/0:69,0:69:99:0,199,2459 0/0:61,0:61:99:0,150,1944 0/0:58,0:58:99:0,156,2007 0/0:28,0:28:69.22:0,69,866 0/0:59,0:59:99:0,147,1931 0/0:28,0:28:75.24:0,75,980 0/0:30,0:30:81.26:0,81,1059 0/0:38,0:38:93.29:0,93,1225 0/0:16,0:16:39.12:0,39,498 0/0:20,0:20:54.17:0,54,665 0/0:26,0:26:72.22:0,72,894 0/0:17,0:17:48.15:0,48,603 0/0:25,0:25:66.21:0,66,837 0/0:47,0:47:99:0,123,1561 0/0:46,0:47:99:0,120,1508 0/0:34,0:34:93.30:0,93,1184 0/0:27,0:27:63.20:0,63,824 0/0:31,0:31:78.24:0,78,1007 0/0:53,0:53:99:0,147,1837 0/0:21,0:21:60.17:0,60,736 0/0:36,0:36:96.31:0,96,1227 0/0:24,0:24:72.22:0,72,893 0/0:23,0:23:57.18:0,57,735 0/0:30,0:30:81.26:0,81,1030 15 82512118 . G A 3621.65 . AC=4;AF=0.048;AN=84;BaseQRankSum=-8.482;DP=2529;Dels=0.00;FS=0.674;HRun=1;HaplotypeScore=0.9643;InbreedingCoeff=-0.0500;MQ=47.70;MQ0=0;MQRankSum=2.142;QD=14.90;ReadPosRankSum=0.734 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,138,1698 0/0:46,0:46:99:0,126,1476 0/1:26,24:50:99:540,0,742 0/0:84,0:84:99:0,220,2836 0/0:109,0:109:99:0,292,3708 0/0:87,0:87:99:0,232,2993 0/0:61,0:61:99:0,162,2059 0/0:80,1:81:99:0,208,2648 0/0:51,0:51:99:0,141,1739 0/0:26,0:26:72.19:0,72,862 0/1:13,25:38:99:668,0,307 0/0:54,0:54:99:0,156,1760 0/0:32,0:32:84.24:0,84,1032 0/0:42,0:42:99:0,120,1467 0/0:187,0:187:99:0,478,5839 0/0:27,0:27:75.20:0,75,904 0/0:46,0:46:99:0,126,1525 0/0:46,0:46:99:0,129,1590 0/0:69,0:69:99:0,171,2107 0/0:77,0:77:99:0,199,2447 0/0:71,0:71:99:0,174,2183 0/0:51,0:51:99:0,126,1565 0/0:111,0:111:99:0,298,3812 0/1:36,44:80:99:1236,0,1033 0/1:33,42:75:99:1178,0,995 0/0:78,0:78:99:0,214,2613 0/0:39,1:40:71.31:0,71,1250 0/0:54,0:54:99:0,141,1691 0/0:37,0:37:99:0,111,1291 0/0:40,0:40:99:0,111,1294 0/0:36,0:36:99:0,99,1161 0/0:62,0:63:99:0,162,1955 0/0:46,0:46:99:0,123,1491 0/0:39,0:39:99:0,105,1223 0/0:42,0:42:99:0,117,1395 0/0:53,0:53:99:0,147,1770 0/0:88,0:88:99:0,217,2676 0/0:42,0:42:99:0,120,1411 0/0:58,0:58:99:0,159,1928 0/0:57,0:57:99:0,162,1924 0/0:45,0:45:99:0,120,1473 0/0:61,0:61:99:0,165,1981 15 82512429 . C G 73022.72 . AC=64;AF=0.762;AN=84;BaseQRankSum=-40.285;DP=6327;DS;Dels=0.00;FS=1.293;HRun=0;HaplotypeScore=3.2469;InbreedingCoeff=-0.0500;MQ=35.96;MQ0=1012;MQRankSum=2.937;QD=12.53;ReadPosRankSum=-6.914 GT:AD:DP:GQ:PL 0/1:73,43:116:99:572,0,1111 0/1:78,36:114:99:550,0,1421 1/1:17,81:98:99:1573,159,0 1/1:25,225:250:99:4482,439,0 1/1:22,227:250:99:4647,463,0 0/1:160,90:250:99:1518,0,2768 0/0:249,1:250:99:0,445,5833 1/1:25,175:200:99:3312,321,0 0/1:83,38:121:99:635,0,1156 0/1:65,51:116:99:715,0,676 1/1:12,80:92:99:1465,147,0 1/1:19,92:111:99:1673,168,0 1/1:12,63:75:77.65:1021,78,0 0/1:61,49:111:99:729,0,893 0/1:160,90:250:99:1258,0,3017 1/1:14,72:86:99:1350,138,0 0/1:80,46:126:99:751,0,1150 1/1:17,81:100:99:1426,147,0 1/1:38,152:191:99:3000,272,0 1/1:19,189:208:99:3989,391,0 1/1:57,164:222:99:3299,266,0 1/1:18,100:118:99:2078,185,0 1/1:23,226:250:99:4715,420,0 1/1:27,166:193:99:3449,313,0 1/1:32,180:214:99:3618,360,0 1/1:18,183:201:99:3323,267,0 1/1:10,69:79:99:1162,120,0 1/1:19,100:120:99:1848,177,0 1/1:23,71:94:99:1424,138,0 1/1:15,92:107:99:1454,150,0 1/1:22,106:128:99:2194,204,0 0/1:122,91:215:99:1540,0,2164 1/1:9,113:122:99:2461,255,0 0/1:87,40:127:99:706,0,1080 0/1:79,36:116:99:371,0,1165 0/1:76,42:118:99:548,0,1278 0/0:249,1:250:99:0,401,5117 0/1:74,50:125:99:677,0,1008 0/1:66,45:112:99:526,0,1127 1/1:16,88:104:99:1753,168,0 0/1:44,35:79:99:466,0,680 0/1:67,50:118:99:746,0,974 15 82533686 . T G 3772.65 . AC=4;AF=0.048;AN=84;BaseQRankSum=6.162;DP=2779;Dels=0.00;FS=3.091;HRun=1;HaplotypeScore=0.8355;InbreedingCoeff=-0.0500;MQ=53.04;MQ0=0;MQRankSum=3.571;QD=14.79;ReadPosRankSum=-1.404 GT:AD:DP:GQ:PL 0/0:62,0:62:99:0,165,2046 0/0:54,0:54:99:0,159,1902 0/1:30,27:57:99:772,0,848 0/0:98,0:98:99:0,283,3512 0/0:91,0:91:99:0,253,3174 0/0:81,0:81:99:0,229,2888 0/0:69,0:69:99:0,196,2460 0/0:80,0:80:99:0,232,2851 0/0:58,0:58:99:0,156,1896 0/0:60,0:60:99:0,168,2066 0/1:28,25:53:99:723,0,840 0/0:48,0:48:99:0,138,1675 0/0:58,0:58:99:0,150,1850 0/0:49,0:49:99:0,141,1735 0/0:165,1:166:99:0,448,5510 0/0:48,0:48:99:0,138,1665 0/0:53,1:54:99:0,115,1729 0/0:62,0:62:99:0,181,2188 0/0:75,1:76:99:0,205,2483 0/0:65,0:65:99:0,180,2151 0/0:78,0:78:99:0,211,2588 0/0:50,1:51:99:0,144,1733 0/0:101,0:101:99:0,289,3616 0/1:35,32:67:99:958,0,1041 0/1:37,41:78:99:1319,0,1066 0/0:73,0:73:99:0,205,2558 0/0:49,0:49:99:0,135,1654 0/0:57,0:57:99:0,156,1907 0/0:55,0:55:99:0,150,1837 0/0:54,0:54:99:0,150,1867 0/0:49,0:49:99:0,138,1717 0/0:95,0:95:99:0,247,3039 0/0:46,0:46:99:0,129,1540 0/0:62,0:62:99:0,177,2111 0/0:67,0:67:99:0,181,2254 0/0:68,0:68:99:0,190,2322 0/0:69,0:69:99:0,184,2298 0/0:60,0:60:99:0,172,2085 0/0:43,0:43:99:0,117,1448 0/0:61,0:61:99:0,181,2180 0/0:42,0:42:99:0,123,1486 0/0:65,0:65:99:0,181,2240 15 83349637 . G A 68.80 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.813;DP=1160;Dels=0.00;FS=2.237;HRun=0;HaplotypeScore=1.0246;InbreedingCoeff=-0.0121;MQ=58.72;MQ0=0;MQRankSum=-0.284;QD=3.44;ReadPosRankSum=0.543 GT:AD:DP:GQ:PL 0/0:17,0:17:48.16:0,48,622 0/0:19,0:19:57.17:0,57,691 0/0:19,0:19:57.17:0,57,705 0/0:57,0:57:99:0,163,2171 0/0:42,0:42:99:0,123,1618 0/0:36,0:36:99:0,99,1313 0/0:19,0:19:57.19:0,57,771 0/0:25,0:25:66.22:0,66,892 0/0:33,0:33:99:0,99,1229 0/0:19,0:19:51.16:0,51,643 0/0:16,0:16:48.15:0,48,600 0/0:21,0:21:60.19:0,60,747 0/0:16,0:16:48.12:0,48,572 0/1:15,5:20:99:115,0,505 0/0:87,0:87:99:0,253,3140 0/0:19,0:19:54.17:0,54,681 0/0:23,0:23:63.20:0,63,799 0/0:19,0:19:48.15:0,48,611 0/0:36,0:36:99:0,99,1244 0/0:45,0:45:99:0,126,1575 0/0:39,0:39:99:0,102,1290 0/0:28,0:28:81.25:0,81,1002 0/0:41,0:42:99:0,114,1498 0/0:23,0:23:63.20:0,63,824 0/0:30,0:30:87.28:0,87,1171 0/0:18,0:18:48.13:0,48,630 0/0:15,0:15:39.12:0,39,494 0/0:13,0:13:39.12:0,39,486 0/0:19,0:19:54.17:0,54,680 0/0:19,0:19:57.17:0,57,702 0/0:22,0:22:54.17:0,54,697 0/0:34,0:34:93.29:0,93,1176 0/0:27,0:27:78.24:0,78,972 0/0:24,0:24:69.20:0,69,855 0/0:15,0:15:45.14:0,45,567 0/0:30,0:30:84.26:0,84,1058 0/0:37,0:37:96.30:0,96,1198 0/0:26,0:26:72.21:0,72,898 0/0:34,0:34:96.31:0,96,1229 0/0:35,0:35:96.30:0,96,1211 0/0:20,0:20:54.17:0,54,672 0/0:22,0:22:66.18:0,66,800 15 83447631 . T G 6924.60 . AC=9;AF=0.107;AN=84;BaseQRankSum=8.496;DP=2683;Dels=0.00;FS=3.407;HRun=0;HaplotypeScore=1.3023;InbreedingCoeff=-0.1200;MQ=59.51;MQ0=0;MQRankSum=-0.242;QD=13.04;ReadPosRankSum=-1.873 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,102,1300 0/0:51,0:51:99:0,132,1641 0/0:41,0:41:99:0,123,1500 0/0:81,0:81:99:0,214,2697 0/0:99,0:99:99:0,250,3244 0/0:87,0:87:99:0,223,2929 0/0:86,0:86:99:0,214,2806 0/0:99,0:99:99:0,256,3272 0/1:29,24:53:99:721,0,755 0/1:23,35:58:99:984,0,661 0/0:38,0:38:99:0,102,1253 0/0:43,0:43:99:0,117,1469 0/0:34,0:34:96.30:0,96,1197 0/0:40,0:40:99:0,105,1323 0/0:179,0:179:99:0,433,5520 0/0:39,1:40:99:0,105,1304 0/0:55,0:55:99:0,144,1809 0/0:49,0:49:99:0,129,1612 0/0:94,0:94:99:0,247,3071 0/0:97,1:98:99:0,244,3141 0/0:96,0:96:99:0,247,3079 0/0:52,0:52:99:0,153,1844 0/0:106,0:106:99:0,280,3599 0/1:50,28:78:99:676,0,1428 0/0:94,0:94:99:0,235,3064 0/1:28,37:65:99:1095,0,765 0/0:31,0:31:87.27:0,87,1080 0/0:54,0:54:99:0,147,1838 0/0:53,0:53:99:0,147,1806 0/0:42,0:42:99:0,105,1315 0/1:23,22:45:99:573,0,693 0/1:43,45:88:99:1247,0,1119 0/0:57,1:58:99:0,150,1870 0/1:23,18:41:99:527,0,696 0/0:56,0:56:99:0,150,1861 0/1:34,23:57:99:601,0,1004 0/0:66,0:66:99:0,166,2069 0/0:56,0:56:99:0,150,1866 0/0:47,1:48:89.93:0,90,1478 0/0:36,0:36:99:0,108,1335 0/1:29,17:46:99:502,0,888 0/0:48,0:48:99:0,120,1517 15 83481880 . A G 12776.46 . 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T A 6049.17 . AC=3;AF=0.036;AN=84;BaseQRankSum=15.076;DP=6376;DS;Dels=0.00;FS=6.827;HRun=2;HaplotypeScore=1.8884;InbreedingCoeff=-0.0370;MQ=57.85;MQ0=0;MQRankSum=10.885;QD=15.09;ReadPosRankSum=-0.556 GT:AD:DP:GQ:PL 0/0:135,0:135:99:0,355,4295 0/0:140,0:140:99:0,367,4429 0/0:132,0:132:99:0,340,4131 0/0:232,0:232:99:0,584,7202 0/0:155,0:155:99:0,406,4988 0/0:223,0:223:99:0,536,6888 0/0:146,0:146:99:0,379,4718 0/0:171,0:171:99:0,418,5247 0/0:125,0:126:99:0,316,3830 0/0:128,0:128:99:0,337,4018 0/0:122,0:122:99:0,322,3860 0/1:58,64:122:99:1869,0,1587 0/1:58,60:118:99:1640,0,1588 0/0:109,0:109:99:0,289,3461 0/0:248,0:250:99:0,668,7893 0/0:93,0:93:99:0,259,3061 0/0:135,0:135:99:0,358,4271 0/0:125,0:125:99:0,337,4026 0/0:213,0:213:99:0,527,6488 0/0:250,0:250:99:0,638,7751 0/0:239,0:239:99:0,587,7231 0/0:151,0:151:99:0,385,4635 0/0:208,0:208:99:0,506,6291 0/0:161,0:161:99:0,415,5097 0/0:193,0:193:99:0,478,6000 0/1:69,92:161:99:2540,0,1764 0/0:104,0:105:99:0,271,3267 0/0:119,0:119:99:0,322,3796 0/0:96,0:96:99:0,259,3078 0/0:125,0:125:99:0,340,4072 0/0:105,0:105:99:0,283,3381 0/0:231,0:231:99:0,554,6887 0/0:155,1:156:99:0,360,4660 0/0:125,0:125:99:0,346,4126 0/0:118,0:118:99:0,328,3901 0/0:123,0:123:99:0,322,3900 0/0:199,0:199:99:0,487,5938 0/0:123,0:123:99:0,343,4059 0/0:145,0:145:99:0,385,4643 0/0:133,0:133:99:0,361,4321 0/0:110,0:110:99:0,295,3531 0/0:125,0:125:99:0,334,4015 15 83519927 . G A 74.63 . 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T C 276.94 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.318;DP=285;Dels=0.00;FS=1.562;HRun=2;HaplotypeScore=0.0344;InbreedingCoeff=-0.0439;MQ=59.54;MQ0=0;MQRankSum=-0.457;QD=16.29;ReadPosRankSum=1.228 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,189 0/0:4,0:4:12.04:0,12,146 0/0:8,0:8:24.07:0,24,292 0/0:4,0:4:9.03:0,9,119 0/0:6,0:6:18.06:0,18,224 0/0:4,0:4:12.04:0,12,154 0/0:5,0:5:15.05:0,15,185 0/0:5,0:5:15.05:0,15,186 0/0:5,0:5:15.05:0,15,183 0/0:6,0:6:15.05:0,15,188 0/1:5,8:13:99:242,0,111 0/0:8,0:8:24.08:0,24,296 0/0:4,0:4:9.03:0,9,108 0/0:8,0:8:24.07:0,24,274 0/0:22,0:22:60.19:0,60,745 0/0:8,0:8:21.07:0,21,268 0/0:6,0:6:18.04:0,18,209 0/0:6,0:6:18.06:0,18,220 0/0:8,0:8:24.07:0,24,292 0/0:13,0:13:36.11:0,36,441 0/0:9,0:9:27.09:0,27,335 0/0:7,0:7:21.06:0,21,253 0/0:3,0:3:9.03:0,9,110 0/1:1,3:4:25.76:97,0,26 0/0:2,0:2:6.02:0,6,76 0/0:2,0:2:6.02:0,6,73 0/0:6,0:6:15.05:0,15,190 0/0:4,0:4:12.04:0,12,153 0/0:10,0:10:27.08:0,27,333 0/0:7,0:7:18.03:0,18,213 0/0:4,0:4:12.03:0,12,140 0/0:13,0:13:30.10:0,30,393 0/0:6,0:6:15.05:0,15,192 0/0:7,0:7:21.06:0,21,255 0/0:6,0:6:18.06:0,18,221 0/0:10,0:10:30.09:0,30,373 0/0:8,0:8:21.07:0,21,266 0/0:6,0:6:18.05:0,18,217 0/0:4,0:4:9.02:0,9,100 0/0:7,0:7:21.07:0,21,260 0/0:2,0:2:6.02:0,6,76 0/0:9,0:9:27.08:0,27,327 15 83781598 . C T 4337.99 . AC=5;AF=0.060;AN=84;BaseQRankSum=-13.081;DP=4877;DS;Dels=0.00;FS=12.882;HRun=1;HaplotypeScore=9.8038;InbreedingCoeff=-0.0633;MQ=59.37;MQ0=0;MQRankSum=0.044;QD=11.69;ReadPosRankSum=-0.280 GT:AD:DP:GQ:PL 0/0:114,0:114:99:0,316,3939 0/0:83,1:84:99:0,201,2810 0/0:86,0:86:99:0,241,3009 0/0:243,0:243:99:0,611,8198 0/0:181,0:181:99:0,454,6135 0/0:162,0:162:99:0,415,5580 0/0:158,0:158:99:0,379,5216 0/0:154,0:154:99:0,388,5276 0/0:83,0:83:99:0,226,2800 0/0:90,0:90:99:0,241,3071 0/0:85,0:86:99:0,229,2892 0/0:76,0:76:99:0,208,2593 0/0:71,0:72:99:0,181,2303 0/0:79,0:79:99:0,199,2529 0/0:239,0:239:99:0,629,7889 0/1:53,29:82:99:753,0,1544 0/0:101,0:101:99:0,277,3485 0/0:95,1:96:99:0,213,3087 0/0:118,0:118:99:0,304,3813 0/0:163,0:164:99:0,412,5245 0/0:114,0:114:99:0,289,3627 0/0:70,0:70:99:0,184,2320 0/0:250,0:250:99:0,653,8849 0/0:168,0:168:99:0,421,5735 0/0:213,0:213:99:0,527,7141 0/0:169,0:169:99:0,421,5702 0/1:29,31:60:99:865,0,798 0/1:48,42:90:99:1180,0,1450 0/0:87,0:87:99:0,235,2982 0/1:54,31:85:99:828,0,1579 0/1:29,25:54:99:712,0,846 0/0:136,0:137:99:0,334,4254 0/0:76,0:76:99:0,211,2627 0/0:77,0:77:99:0,202,2563 0/0:73,0:73:99:0,202,2534 0/0:102,0:102:99:0,283,3485 0/0:107,0:107:99:0,268,3352 0/0:98,0:98:99:0,262,3277 0/0:89,0:89:99:0,229,2867 0/0:117,0:117:99:0,307,3910 0/0:69,0:69:99:0,181,2303 0/0:104,0:104:99:0,283,3518 15 83781599 . T G 4578.59 . AC=5;AF=0.060;AN=84;BaseQRankSum=5.639;DP=4897;DS;Dels=0.00;FS=11.363;HRun=1;HaplotypeScore=10.4430;InbreedingCoeff=-0.0633;MQ=59.37;MQ0=0;MQRankSum=0.119;QD=12.21;ReadPosRankSum=-0.628 GT:AD:DP:GQ:PL 0/0:114,0:114:99:0,304,3751 0/0:83,1:84:99:0,193,2811 0/0:86,0:86:99:0,244,2995 0/0:240,0:240:99:0,596,7691 0/0:182,0:182:99:0,460,5995 0/0:159,0:160:99:0,406,5302 0/0:159,0:159:99:0,382,5038 0/0:157,0:157:99:0,394,5058 0/0:83,0:83:99:0,229,2831 0/0:91,0:91:99:0,241,3003 0/0:87,0:87:99:0,238,2971 0/0:77,0:77:99:0,211,2608 0/0:74,0:74:99:0,187,2343 0/0:79,0:79:99:0,205,2565 0/0:242,1:243:99:0,635,7817 0/1:56,28:84:99:713,0,1547 0/0:101,0:101:99:0,277,3407 0/0:96,1:97:99:0,224,3197 0/0:119,0:119:99:0,292,3671 0/0:164,0:164:99:0,415,5212 0/0:115,0:115:99:0,301,3784 0/0:72,0:72:99:0,184,2298 0/0:250,0:250:99:0,659,8508 0/0:166,0:166:99:0,421,5522 0/0:213,0:213:99:0,527,6876 0/0:172,0:172:99:0,418,5446 0/1:27,33:60:99:911,0,783 0/1:48,42:90:99:1258,0,1396 0/0:87,0:87:99:0,235,2959 0/1:55,32:87:99:932,0,1576 0/1:29,25:54:99:764,0,830 0/0:137,1:139:99:0,343,4354 0/0:77,0:77:99:0,211,2583 0/0:75,0:75:99:0,199,2493 0/0:76,0:76:99:0,211,2637 0/0:103,0:103:99:0,289,3587 0/0:108,0:108:99:0,265,3292 0/0:97,0:97:99:0,256,3207 0/0:86,0:86:99:0,226,2786 0/0:116,0:116:99:0,304,3842 0/0:68,0:68:99:0,178,2233 0/0:105,0:105:99:0,286,3539 15 83781631 . C T 13086.26 . AC=10;AF=0.119;AN=84;BaseQRankSum=-12.959;DP=4014;DS;Dels=0.00;FS=33.941;HRun=0;HaplotypeScore=3.1948;InbreedingCoeff=-0.1351;MQ=59.40;MQ0=0;MQRankSum=1.383;QD=12.52;ReadPosRankSum=2.719 GT:AD:DP:GQ:PL 0/0:102,0:102:99:0,274,3381 0/0:68,0:69:99:0,181,2215 0/0:72,0:72:99:0,202,2427 0/0:194,1:195:99:0,485,6809 0/1:89,58:147:99:1550,0,2763 0/1:64,55:119:99:1523,0,1879 0/1:57,53:111:99:1463,0,1743 0/0:138,0:138:99:0,358,4668 0/0:70,0:70:99:0,199,2420 0/0:71,0:71:99:0,202,2443 0/1:34,42:76:99:1153,0,940 0/0:64,0:64:99:0,172,2110 0/0:58,0:58:99:0,168,2024 0/0:57,0:57:99:0,165,2023 0/0:212,0:213:99:0,572,6931 0/0:66,0:66:99:0,180,2164 0/0:88,0:88:99:0,223,2777 0/0:83,0:83:99:0,217,2631 0/0:105,0:105:99:0,292,3505 0/0:135,0:135:99:0,358,4471 0/1:41,39:80:99:1061,0,989 0/1:34,18:52:99:465,0,1068 0/0:211,0:211:99:0,566,7388 0/1:72,58:130:99:1517,0,2070 0/1:86,67:153:99:1838,0,2546 0/0:137,0:137:99:0,367,4873 0/0:58,0:58:99:0,162,2024 0/0:70,0:70:99:0,196,2385 0/0:73,0:73:99:0,193,2375 0/0:74,0:74:99:0,193,2323 0/0:56,0:56:99:0,153,1921 0/0:100,0:101:99:0,274,3414 0/0:63,0:63:99:0,177,2168 0/0:70,0:70:99:0,193,2391 0/0:78,0:78:99:0,211,2612 0/0:81,0:81:99:0,223,2696 0/1:40,49:89:99:1323,0,1068 0/1:45,43:88:99:1193,0,1243 0/0:76,0:76:99:0,196,2398 0/0:98,0:98:99:0,265,3150 0/0:54,0:54:99:0,150,1832 0/0:81,0:81:99:0,226,2795 15 84581889 . G A 26492.74 . AC=20;AF=0.238;AN=84;BaseQRankSum=4.337;DP=3879;Dels=0.00;FS=0.432;HRun=0;HaplotypeScore=2.0262;InbreedingCoeff=-0.1813;MQ=59.32;MQ0=0;MQRankSum=1.577;QD=14.27;ReadPosRankSum=1.071 GT:AD:DP:GQ:PL 0/0:76,0:76:99:0,190,2298 0/0:71,1:72:99:0,160,2176 0/0:59,0:59:99:0,162,1966 0/1:122,106:228:99:2841,0,3453 0/1:104,82:187:99:2398,0,3052 0/0:138,0:138:99:0,352,4608 0/1:82,36:118:99:895,0,2491 0/1:66,65:131:99:1710,0,1811 0/1:33,41:74:99:1242,0,810 0/1:25,36:61:99:991,0,696 0/1:31,34:65:99:1040,0,810 0/0:58,0:58:99:0,159,1907 0/1:27,32:59:99:923,0,812 0/1:33,33:66:99:891,0,939 0/0:192,0:192:99:0,478,5811 0/0:59,0:59:99:0,162,1973 0/1:36,39:76:99:1070,0,991 0/0:69,0:69:99:0,193,2278 0/0:114,0:114:99:0,304,3671 0/1:40,54:94:99:1516,0,1081 0/0:102,0:104:99:0,253,3056 0/0:62,0:62:99:0,159,1990 0/1:123,84:207:99:2406,0,3474 0/0:128,0:129:99:0,325,4137 0/0:131,0:131:99:0,319,4215 0/0:131,1:132:99:0,313,4505 0/0:55,0:55:99:0,141,1711 0/0:74,0:74:99:0,202,2441 0/1:34,22:56:99:598,0,1027 0/0:58,0:60:99:0,156,1862 0/0:53,0:53:99:0,147,1786 0/1:43,68:111:99:1750,0,1051 0/0:79,0:79:99:0,211,2517 0/1:26,36:63:99:1043,0,737 0/0:55,0:55:99:0,144,1721 0/1:29,38:67:99:1078,0,758 0/0:102,0:103:99:0,250,3082 0/0:71,0:71:99:0,199,2343 0/0:78,0:78:99:0,205,2458 1/1:0,71:71:99:2408,193,0 0/1:30,29:59:99:785,0,750 0/1:33,30:63:99:908,0,979 15 84581904 . T C 58179.30 . 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G T 25618.58 . 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T C 282 . 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G C 11363.42 . 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C G 1102.54 . 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C T 1556.30 . 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G T 1591.58 . 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C A 689.48 . 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T C 120.95 . 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GCGAGCAGATCC G 133.81 . AC=7;AF=0.083;AN=84;BaseQRankSum=-9.107;DP=2039;FS=1959.420;HRun=0;HaplotypeScore=463.1458;InbreedingCoeff=-0.1036;MQ=59.19;MQ0=1;MQRankSum=1.167;QD=0.51;ReadPosRankSum=-18.198 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,123,6450 0/0:45,0:45:45.43:0,45,5771 0/1:30,0:30:42.49:42,0,3002 0/0:85,0:85:86.97:0,87,11154 0/0:70,0:70:45.63:0,46,8451 0/0:64,0:62:69.27:0,69,8375 0/0:33,0:30:57.63:0,58,3840 0/0:63,0:60:92.65:0,93,8053 0/1:28,5:33:36.25:36,0,3413 0/0:39,0:39:14.74:0,15,4159 0/0:36,0:36:57.27:0,57,4422 0/1:26,0:26:60.15:60,0,3053 0/0:41,0:41:0.73:7,0,4490 0/0:39,0:39:18.77:0,19,5364 0/0:125,0:125:84.62:0,85,14703 0/0:33,0:33:19.26:0,19,3651 0/0:49,0:49:15.61:0,16,6033 0/0:32,0:32:84.20:0,84,4255 0/0:65,0:65:24.74:0,25,9385 0/0:72,0:72:99:0,123,8454 0/0:67,0:66:26.10:0,26,8608 0/0:31,0:31:90.25:0,90,4436 0/0:94,0:94:99:0,133,12070 0/0:49,0:48:99:0,121,6223 0/0:59,0:59:76.35:0,76,7866 0/0:49,0:46:99:0,109,6652 0/0:34,0:34:15.39:0,15,4132 0/0:45,0:45:62.46:0,62,5670 0/1:31,6:37:39.84:40,0,4240 0/0:35,0:35:20.87:0,21,4734 0/1:48,0:48:9.89:10,0,5557 0/0:71,0:71:36.29:0,36,8448 0/0:32,0:32:24.32:0,24,4530 0/0:34,0:34:90.30:0,90,3725 0/0:25,0:25:38.25:0,38,2877 0/0:45,0:45:33.97:0,34,4554 0/0:58,0:58:99:0,100,7176 0/0:42,0:42:85.40:0,85,5218 0/0:40,0:40:39.27:0,39,4747 0/1:46,0:46:20.11:20,0,5557 0/0:32,0:32:18.70:0,19,3933 0/1:40,0:40:42.66:43,0,4817 15 85448875 . C A 14516.23 . AC=24;AF=0.286;AN=84;BaseQRankSum=-23.160;DP=1661;Dels=0.01;FS=1.105;HRun=1;HaplotypeScore=4.0369;InbreedingCoeff=0.0667;MQ=59.31;MQ0=1;MQRankSum=-0.197;QD=17.45;ReadPosRankSum=-0.482 GT:AD:DP:GQ:PL 0/1:23,18:41:99:521,0,729 0/1:21,17:38:99:492,0,687 0/0:20,0:20:54.17:0,54,689 0/0:68,1:69:99:0,166,2614 0/1:27,28:55:99:849,0,928 0/0:51,0:51:99:0,147,1999 0/1:5,22:28:99:724,0,115 0/1:26,30:56:99:935,0,893 1/1:0,26:26:75.21:883,75,0 0/1:12,18:30:99:550,0,330 0/1:15,14:30:99:406,0,476 0/0:21,0:21:57.18:0,57,725 0/1:18,11:30:99:307,0,548 0/0:34,0:34:99:0,102,1296 0/1:48,53:101:99:1549,0,1436 0/1:12,13:25:99:396,0,312 0/0:40,0:40:99:0,120,1510 0/0:28,0:28:81.26:0,81,1025 0/0:59,0:59:99:0,169,2145 0/1:30,30:60:99:882,0,930 0/0:56,0:56:99:0,159,2015 0/0:26,0:26:75.24:0,75,951 0/1:40,37:77:99:1126,0,1414 0/1:18,23:41:99:730,0,563 0/0:46,0:47:99:0,135,1815 0/1:25,17:42:99:501,0,877 0/0:26,0:26:78.25:0,78,986 0/0:39,0:39:99:0,114,1404 0/1:16,11:27:99:319,0,524 0/0:28,0:28:81.26:0,81,1042 0/0:36,0:36:99:0,105,1317 0/0:52,0:54:99:0,147,1873 0/0:29,0:29:81.26:0,81,1029 1/1:0,27:27:78.24:945,78,0 1/1:0,22:22:66.20:804,66,0 1/1:1,33:34:63.72:1141,64,0 0/0:44,0:44:99:0,132,1674 0/0:32,0:33:96.31:0,96,1214 0/1:15,16:31:99:456,0,481 0/0:35,0:36:99:0,105,1328 0/0:24,0:24:69.22:0,69,877 0/0:29,0:29:87.28:0,87,1111 15 85478410 . A G 68924.04 . AC=64;AF=0.762;AN=84;BaseQRankSum=8.773;DP=2634;Dels=0.00;FS=2.845;HRun=3;HaplotypeScore=1.8781;InbreedingCoeff=-0.0500;MQ=59.08;MQ0=0;MQRankSum=-0.092;QD=27.48;ReadPosRankSum=2.183 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1701,135,0 1/1:0,53:53:99:1770,138,0 1/1:0,45:45:99:1540,123,0 1/1:0,107:107:99:3690,283,0 0/1:39,47:86:99:1461,0,1106 1/1:0,94:94:99:3164,241,0 1/1:0,66:66:99:2265,169,0 1/1:0,68:68:99:2323,178,0 1/1:0,45:45:99:1533,123,0 0/1:26,21:47:99:672,0,692 1/1:0,50:50:99:1648,129,0 0/1:18,18:36:99:580,0,554 0/1:22,21:43:99:571,0,667 1/1:0,42:42:99:1407,108,0 1/1:0,177:177:99:5682,448,0 0/1:24,42:66:99:1261,0,601 1/1:0,41:41:99:1394,111,0 0/0:40,0:40:99:0,102,1243 0/1:28,38:66:99:1138,0,788 0/1:42,41:83:99:1168,0,1174 1/1:1,70:71:99:2440,196,0 1/1:0,52:52:99:1737,135,0 1/1:0,114:114:99:4126,310,0 0/1:37,30:67:99:915,0,1077 1/1:0,98:98:99:3345,250,0 0/1:36,47:83:99:1394,0,1008 0/1:13,19:32:99:585,0,360 0/1:12,24:36:99:734,0,345 1/1:0,41:41:99:1331,105,0 1/1:0,63:63:99:2117,168,0 0/1:22,31:53:99:941,0,568 1/1:0,111:111:99:3533,274,0 1/1:0,48:48:99:1614,129,0 0/1:22,22:44:99:605,0,659 0/1:25,24:49:99:713,0,725 1/1:0,32:32:84.26:1073,84,0 0/0:86,0:86:99:0,238,2927 0/1:23,29:52:99:832,0,587 0/1:21,12:33:99:332,0,616 1/1:0,58:58:99:1959,156,0 1/1:0,44:44:99:1532,123,0 1/1:0,62:62:99:2098,168,0 15 85525556 . C G 70.31 . AC=4;AF=0.067;AN=60;BaseQRankSum=-0.596;DP=76;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.1290;InbreedingCoeff=0.2403;MQ=58.39;MQ0=0;MQRankSum=-1.023;QD=11.72;ReadPosRankSum=-0.596 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:3.01:0,3,45 ./. 0/0:6,0:6:15.01:0,15,163 0/0:3,0:3:9.03:0,9,112 0/0:1,0:1:3.01:0,3,40 0/0:1,0:1:3.01:0,3,40 0/0:3,0:3:9.03:0,9,119 0/1:1,1:2:1.76:38,3,0 0/1:0,2:2:1.76:33,3,0 1/1:0,2:2:6.02:76,6,0 0/0:1,0:1:2.99:0,3,24 0/0:3,0:3:6.02:0,6,83 0/0:2,0:2:6.01:0,6,55 0/0:2,0:2:6.01:0,6,68 ./. ./. 0/0:3,0:3:6.02:0,6,78 0/0:5,0:5:15.03:0,15,177 0/0:4,0:4:9.03:0,9,113 ./. 0/0:2,0:2:3.01:0,3,45 0/0:5,0:5:9.03:0,9,120 ./. 0/0:4,0:4:9.03:0,9,127 0/0:6,0:6:15.02:0,15,177 0/0:1,0:1:3.01:0,3,38 ./. 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,31 0/0:2,0:2:3.01:0,3,45 0/0:2,0:2:6.02:0,6,68 ./. 0/0:1,0:1:3.01:0,3,37 ./. 0/0:1,0:1:3.01:0,3,37 ./. 0/0:2,0:2:6.01:0,6,61 ./. ./. ./. 0/0:3,0:3:6.02:0,6,77 15 85619100 . A G 1831.90 . AC=1;AF=0.012;AN=84;BaseQRankSum=-12.128;DP=7107;DS;Dels=0.00;FS=1.813;HRun=1;HaplotypeScore=2.0648;InbreedingCoeff=-0.0120;MQ=59.68;MQ0=0;MQRankSum=0.097;QD=14.89;ReadPosRankSum=-1.771 GT:AD:DP:GQ:PL 0/0:129,0:129:99:0,370,4529 0/0:128,0:128:99:0,349,4311 0/0:115,0:115:99:0,325,3965 0/0:250,0:250:99:0,719,8903 0/0:250,0:250:99:0,719,8965 0/0:250,0:250:99:0,725,9267 0/0:250,0:250:99:0,713,9030 0/0:244,0:244:99:0,698,8715 0/0:145,0:145:99:0,394,4895 0/0:140,0:140:99:0,397,4842 0/0:144,0:144:99:0,412,5044 0/0:133,0:133:99:0,367,4551 0/0:116,0:116:99:0,325,3996 0/1:53,70:123:99:1878,0,1515 0/0:250,0:250:99:0,704,8563 0/0:107,0:107:99:0,310,3796 0/0:124,0:125:99:0,352,4311 0/0:149,0:149:99:0,424,5159 0/0:213,0:213:99:0,596,7404 0/0:219,0:219:99:0,614,7670 0/0:214,0:214:99:0,584,7253 0/0:125,1:126:99:0,328,4180 0/0:249,1:250:99:0,684,8902 0/0:250,0:250:99:0,692,8790 0/0:250,0:250:99:0,725,9026 0/0:250,0:250:99:0,695,8737 0/0:108,0:108:99:0,313,3853 0/0:111,0:111:99:0,319,3896 0/0:147,0:147:99:0,424,5222 0/0:131,0:131:99:0,370,4564 0/0:117,0:118:99:0,331,4124 0/0:191,0:191:99:0,518,6445 0/0:125,0:125:99:0,355,4339 0/0:123,0:123:99:0,358,4408 0/0:127,0:127:99:0,361,4476 0/0:170,0:170:99:0,472,5877 0/0:208,0:208:99:0,560,6947 0/0:156,0:156:99:0,430,5346 0/0:131,0:131:99:0,373,4555 0/0:166,0:166:99:0,488,5996 0/0:127,0:127:99:0,349,4297 0/0:148,0:148:99:0,418,5143 15 86182670 . G A 2020.81 . AC=3;AF=0.036;AN=84;BaseQRankSum=-9.062;DP=2395;Dels=0.00;FS=4.692;HRun=2;HaplotypeScore=1.1082;InbreedingCoeff=-0.0370;MQ=59.41;MQ0=0;MQRankSum=-0.554;QD=11.61;ReadPosRankSum=0.782 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,135,1705 0/0:46,0:46:99:0,117,1504 0/0:50,0:50:99:0,135,1694 0/0:94,0:94:99:0,229,3132 0/0:103,0:103:99:0,250,3452 0/0:74,0:74:99:0,178,2409 0/0:67,0:68:99:0,163,2216 0/1:39,32:71:99:812,0,1147 0/0:57,0:57:99:0,138,1769 0/0:50,0:50:99:0,135,1706 0/0:53,0:53:99:0,138,1769 0/0:45,0:45:99:0,117,1515 0/0:41,0:41:99:0,111,1397 0/0:38,0:38:99:0,99,1284 0/0:169,0:170:99:0,418,5407 0/0:35,0:35:96.31:0,96,1232 0/0:45,0:45:99:0,114,1458 0/1:26,20:46:99:543,0,741 0/1:30,27:57:99:741,0,768 0/0:51,0:51:99:0,141,1760 0/0:61,0:61:99:0,147,1896 0/0:29,0:29:84.27:0,84,1063 0/0:98,0:98:99:0,232,3168 0/0:66,0:66:99:0,181,2445 0/0:76,0:76:99:0,196,2650 0/0:87,0:87:99:0,199,2720 0/0:29,0:29:78.22:0,78,982 0/0:56,0:56:99:0,147,1877 0/0:32,0:32:87.24:0,87,1086 0/0:44,0:44:99:0,117,1496 0/0:37,0:37:99:0,111,1409 0/0:57,0:57:99:0,156,1980 0/0:41,0:41:99:0,99,1292 0/0:52,0:52:99:0,132,1706 0/0:54,1:55:99:0,105,1710 0/0:44,0:44:99:0,117,1506 0/0:56,0:56:99:0,123,1615 0/0:44,0:44:99:0,111,1427 0/0:40,0:40:99:0,111,1401 0/0:46,0:46:99:0,117,1486 0/0:56,0:56:99:0,159,2008 0/0:47,0:47:99:0,132,1698 15 86273745 . A C 1485.71 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.912;DP=5601;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.1976;InbreedingCoeff=-0.0120;MQ=59.51;MQ0=0;MQRankSum=0.562;QD=12.28;ReadPosRankSum=0.404 GT:AD:DP:GQ:PL 0/0:125,0:125:99:0,355,4347 0/0:113,0:113:99:0,310,3812 0/0:109,0:109:99:0,298,3679 0/0:155,0:157:99:0,421,5323 0/0:127,0:128:99:0,352,4511 0/0:134,0:134:99:0,358,4691 0/0:114,0:114:99:0,304,3941 0/0:134,1:135:99:0,349,4490 0/0:114,0:114:99:0,313,3810 0/0:104,0:104:99:0,283,3481 0/0:113,0:113:99:0,328,3967 0/0:118,0:118:99:0,328,4042 0/0:99,0:99:99:0,274,3399 0/0:122,0:122:99:0,343,4226 0/0:250,0:250:99:0,656,8151 0/0:99,0:99:99:0,283,3478 0/0:113,0:113:99:0,313,3895 0/0:104,0:104:99:0,301,3639 0/0:209,0:209:99:0,569,7056 0/0:218,0:218:99:0,569,7166 0/0:249,0:249:99:0,665,8315 0/0:121,0:121:99:0,325,4008 0/0:155,0:155:99:0,394,5152 0/0:109,0:109:99:0,280,3669 0/0:139,1:140:99:0,373,4802 0/0:106,0:106:99:0,289,3731 0/0:84,0:84:99:0,226,2819 0/0:115,0:115:99:0,316,3894 0/0:105,0:105:99:0,286,3518 0/0:113,0:113:99:0,313,3849 0/0:103,0:103:99:0,280,3494 0/0:246,0:246:99:0,644,8172 0/0:157,0:157:99:0,421,5251 0/0:113,0:113:99:0,322,3945 0/0:110,0:110:99:0,316,3858 0/1:64,57:121:99:1532,0,1751 0/0:205,0:205:99:0,533,6664 0/0:119,0:119:99:0,313,3877 0/0:111,0:111:99:0,313,3778 0/0:133,0:133:99:0,361,4471 0/0:97,0:97:99:0,274,3342 0/0:111,0:111:99:0,322,3986 15 86790997 . G A 1261.57 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.593;DP=1320;Dels=0.00;FS=1.424;HRun=0;HaplotypeScore=0.5610;InbreedingCoeff=-0.0244;MQ=58.98;MQ0=0;MQRankSum=0.644;QD=12.49;ReadPosRankSum=1.097 GT:AD:DP:GQ:PL 0/0:24,0:24:63.17:0,63,717 0/0:16,0:16:45.13:0,45,514 0/0:26,0:26:66.18:0,66,762 0/0:66,0:66:99:0,193,2283 0/0:71,0:71:99:0,205,2447 0/0:47,0:47:99:0,135,1578 0/0:31,0:31:87.24:0,87,1036 0/0:40,0:40:99:0,117,1362 0/0:16,0:16:39.11:0,39,457 0/0:16,0:16:48.09:0,48,513 0/0:27,0:27:63.15:0,63,709 0/0:28,0:28:69.18:0,69,771 0/0:17,0:18:48.12:0,48,553 0/0:22,0:22:63.16:0,63,697 0/0:71,0:71:99:0,187,2146 0/0:31,0:31:84.22:0,84,930 0/0:19,0:19:54.15:0,54,601 0/0:21,0:21:57.15:0,57,623 0/1:29,15:44:99:431,0,692 0/1:27,30:57:99:893,0,641 0/0:41,0:41:99:0,111,1264 0/0:33,0:33:93.23:0,93,1014 0/0:77,0:77:99:0,214,2581 0/0:32,0:32:84.25:0,84,1025 0/0:43,0:43:99:0,123,1457 0/0:41,0:41:99:0,117,1391 0/0:16,0:16:48.12:0,48,524 0/0:20,0:20:60.16:0,60,665 0/0:17,0:17:48.12:0,48,525 0/0:20,0:20:54.14:0,54,603 0/0:25,0:25:75.18:0,75,810 0/0:51,0:51:99:0,120,1385 0/0:31,0:31:87.21:0,87,965 0/0:11,0:11:30.08:0,30,338 0/0:14,0:14:36.10:0,36,422 0/0:18,0:18:54.12:0,54,576 0/0:48,0:48:99:0,129,1457 0/0:18,0:18:51.12:0,51,548 0/0:17,0:17:48.11:0,48,520 0/0:26,0:26:72.17:0,72,791 0/0:10,0:10:27.06:0,27,284 0/0:20,0:20:57.14:0,57,612 15 86814860 . C T 619.96 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.991;DP=4297;DS;Dels=0.00;FS=3.025;HRun=0;HaplotypeScore=2.3742;InbreedingCoeff=-0.0120;MQ=59.48;MQ0=0;MQRankSum=1.478;QD=10.88;ReadPosRankSum=-0.496 GT:AD:DP:GQ:PL 0/0:76,0:76:99:0,205,2605 0/0:77,0:79:99:0,211,2662 0/1:35,22:57:99:666,0,971 0/0:175,0:175:99:0,457,6163 0/0:160,0:160:99:0,406,5533 0/0:145,0:146:99:0,373,5024 0/0:138,0:138:99:0,361,4800 0/0:132,0:132:99:0,334,4535 0/0:70,0:70:99:0,181,2312 0/0:65,0:65:99:0,166,2127 0/0:67,0:67:99:0,181,2292 0/0:60,0:60:99:0,169,2152 0/0:46,0:46:99:0,114,1469 0/0:69,0:69:99:0,184,2339 0/0:248,0:250:99:0,632,8107 0/0:49,0:49:99:0,138,1774 0/0:86,0:86:99:0,217,2771 0/0:75,0:75:99:0,190,2439 0/0:170,0:171:99:0,448,5653 0/0:172,0:172:99:0,454,5814 0/0:167,0:168:99:0,442,5666 0/0:77,0:77:99:0,208,2637 0/0:193,1:194:99:0,493,6902 0/0:138,0:138:99:0,361,4893 0/0:117,0:117:99:0,313,4223 0/0:118,0:118:99:0,307,4117 0/0:70,0:70:99:0,181,2373 0/0:61,0:61:99:0,163,2074 0/0:66,0:66:99:0,172,2231 0/0:65,0:65:99:0,178,2299 0/0:77,0:77:99:0,220,2771 0/0:160,0:160:99:0,433,5551 0/0:110,0:110:99:0,292,3710 0/0:68,0:68:99:0,181,2339 0/0:64,0:64:99:0,178,2261 0/0:86,0:86:99:0,244,3082 0/0:165,0:165:99:0,424,5371 0/0:68,0:68:99:0,190,2400 0/0:60,0:60:99:0,162,2048 0/0:76,0:76:99:0,214,2703 0/0:64,0:64:99:0,175,2232 0/0:81,0:81:99:0,220,2803 15 86814866 . A G 91105.74 . AC=53;AF=0.631;AN=84;BaseQRankSum=42.531;DP=4513;DS;Dels=0.00;FS=5.265;HRun=0;HaplotypeScore=2.3787;InbreedingCoeff=0.3354;MQ=59.48;MQ0=0;MQRankSum=0.507;QD=26.44;ReadPosRankSum=-1.276 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2919,229,0 1/1:0,83:83:99:2854,226,0 0/1:24,39:63:99:1115,0,617 0/1:93,89:182:99:2674,0,2472 0/1:81,87:168:99:2575,0,2109 0/1:71,80:151:99:2466,0,1883 0/1:79,69:148:99:2097,0,2143 1/1:0,136:136:99:4752,340,0 1/1:1,73:74:99:2392,161,0 1/1:0,70:70:99:2333,181,0 1/1:1,68:69:99:2281,152,0 0/0:64,0:64:99:0,178,2125 0/0:47,1:48:81.79:0,82,1408 0/1:35,42:77:99:1217,0,926 1/1:0,250:250:99:8339,647,0 0/1:31,20:51:99:607,0,912 0/1:42,45:87:99:1261,0,1085 0/0:72,0:72:99:0,193,2318 0/0:181,0:181:99:0,466,5699 0/0:175,0:175:99:0,463,5667 0/1:85,95:180:99:2772,0,2110 1/1:0,92:92:99:3091,244,0 0/0:189,0:189:99:0,506,6176 1/1:0,142:142:99:5045,364,0 1/1:0,128:128:99:4582,331,0 1/1:0,121:121:99:4286,313,0 0/1:49,29:78:99:718,0,1351 1/1:0,67:67:99:2360,184,0 0/1:33,34:67:99:1019,0,810 1/1:0,71:71:99:2491,196,0 1/1:0,79:79:99:2744,214,0 0/0:171,0:171:99:0,445,5476 1/1:0,119:119:99:3945,310,0 1/1:2,69:71:99:2369,148,0 0/1:34,33:67:99:1000,0,936 1/1:0,98:98:99:3364,265,0 1/1:0,177:177:99:5787,454,0 1/1:0,68:68:99:2366,187,0 1/1:0,59:59:99:2120,169,0 0/0:81,0:81:99:0,229,2739 0/1:27,40:67:99:1164,0,729 0/0:86,0:86:99:0,229,2762 15 87097705 . G T 135.28 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.235;DP=483;Dels=0.00;FS=5.456;HRun=1;HaplotypeScore=0.2943;InbreedingCoeff=-0.0303;MQ=59.10;MQ0=0;MQRankSum=-0.204;QD=5.88;ReadPosRankSum=0.647 GT:AD:DP:GQ:PL 0/0:9,0:9:27.09:0,27,342 0/0:8,0:8:21.07:0,21,262 0/0:7,0:7:21.07:0,21,267 0/1:9,2:11:45.06:45,0,260 0/0:9,0:9:24.08:0,24,319 0/0:11,0:11:30.10:0,30,413 0/0:5,0:5:15.05:0,15,201 0/0:4,0:4:12.04:0,12,162 0/0:9,0:9:27.07:0,27,323 0/0:12,0:12:30.09:0,30,367 0/0:6,0:6:15.04:0,15,175 0/0:11,0:11:24.08:0,24,306 0/0:7,0:7:21.07:0,21,271 0/0:10,0:10:27.09:0,27,341 0/0:39,0:39:99:0,108,1380 0/0:6,0:6:18.06:0,18,230 0/0:16,0:16:45.14:0,45,562 0/0:7,0:7:18.06:0,18,235 0/0:17,0:17:48.14:0,48,589 0/0:22,0:22:54.16:0,54,686 0/0:21,0:21:54.17:0,54,701 0/0:20,0:20:57.18:0,57,704 0/1:7,5:12:99:153,0,215 0/0:4,0:4:12.04:0,12,169 0/0:4,0:4:12.04:0,12,165 0/0:4,0:4:12.03:0,12,150 0/0:9,0:9:27.08:0,27,336 0/0:7,0:7:18.05:0,18,215 0/0:11,0:11:33.10:0,33,408 0/0:8,0:8:21.07:0,21,263 0/0:12,0:12:27.07:0,27,329 0/0:17,0:17:42.14:0,42,551 0/0:17,0:17:48.15:0,48,597 0/0:9,0:9:27.08:0,27,338 0/0:11,0:11:30.10:0,30,378 0/0:14,0:14:42.10:0,42,511 0/0:14,0:14:42.13:0,42,528 0/0:13,0:13:33.10:0,33,418 0/0:10,0:10:27.08:0,27,329 0/0:13,0:13:33.11:0,33,425 0/0:19,1:20:12:0,12,529 0/0:7,0:7:21.06:0,21,262 15 87217613 . A G 23127.43 . 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G A 50711.14 . AC=84;AF=1.000;AN=84;DP=1519;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.6803;InbreedingCoeff=-0.0000;MQ=59.20;MQ0=0;QD=33.38 GT:AD:DP:GQ:PL 1/1:0,24:24:72.22:854,72,0 1/1:0,33:33:90.26:1084,90,0 1/1:0,29:29:81.24:977,81,0 1/1:0,60:60:99:1993,165,0 1/1:0,44:44:99:1526,126,0 1/1:0,33:33:90.28:1141,90,0 1/1:0,29:29:78.25:990,78,0 1/1:0,36:36:93.29:1168,93,0 1/1:0,30:30:84.26:1025,84,0 1/1:0,32:32:75.23:954,75,0 1/1:0,19:19:57.17:674,57,0 1/1:0,35:35:90.28:1113,90,0 1/1:0,28:28:84.25:997,84,0 1/1:0,29:29:87.27:1049,87,0 1/1:0,93:93:99:3013,250,0 1/1:0,24:24:69.21:832,69,0 1/1:0,32:32:93.28:1113,93,0 1/1:0,30:30:78.24:972,78,0 1/1:0,51:51:99:1649,135,0 1/1:0,44:44:99:1391,111,0 1/1:0,46:46:99:1483,120,0 1/1:0,33:33:93.28:1126,93,0 1/1:0,61:61:99:2001,165,0 1/1:0,29:29:81.25:1002,81,0 1/1:0,28:28:78.24:942,78,0 1/1:0,29:29:78.24:958,78,0 1/1:0,36:36:96.29:1175,96,0 1/1:0,28:28:72.22:903,72,0 1/1:0,34:34:99:1179,99,0 1/1:0,41:41:99:1399,117,0 1/1:0,28:28:81.24:974,81,0 1/1:0,50:50:99:1665,135,0 1/1:0,31:31:78.24:985,78,0 1/1:0,31:31:84.24:1002,84,0 1/1:0,38:38:99:1283,105,0 1/1:0,40:40:99:1265,102,0 1/1:0,52:52:99:1746,144,0 1/1:0,19:19:57.17:678,57,0 1/1:0,26:26:72.22:865,72,0 1/1:0,29:29:84.25:1001,84,0 1/1:0,40:40:99:1368,114,0 1/1:0,34:34:99:1194,99,0 15 89002870 . C T 1440.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.267;DP=2557;Dels=0.00;FS=5.915;HRun=2;HaplotypeScore=1.0239;InbreedingCoeff=-0.0244;MQ=59.27;MQ0=0;MQRankSum=0.562;QD=12.98;ReadPosRankSum=0.464 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,117,1457 0/0:44,0:44:99:0,129,1587 0/0:47,0:47:99:0,129,1612 0/0:93,0:93:99:0,268,3549 0/0:106,0:107:99:0,310,4161 0/0:86,0:87:99:0,250,3328 0/1:31,35:66:99:1061,0,1010 0/0:98,0:98:99:0,286,3788 0/0:50,0:50:99:0,138,1749 0/0:40,0:40:99:0,117,1460 0/0:46,0:46:99:0,135,1675 0/0:48,0:48:99:0,141,1722 0/0:33,0:33:93.29:0,93,1157 0/0:35,0:35:99:0,102,1260 0/0:138,0:139:99:0,394,4962 0/0:42,0:42:99:0,123,1522 0/0:54,0:54:99:0,162,2004 0/0:45,0:46:99:0,129,1605 0/0:76,0:76:99:0,217,2640 0/0:94,0:94:99:0,268,3324 0/0:85,0:85:99:0,244,3070 0/0:48,0:48:99:0,141,1727 0/0:104,0:104:99:0,310,4200 0/0:65,0:65:99:0,187,2499 0/0:87,0:87:99:0,253,3358 0/0:82,0:82:99:0,229,3031 0/0:35,0:35:99:0,102,1262 0/0:59,0:59:99:0,175,2127 0/0:41,0:41:99:0,120,1473 0/0:49,0:49:99:0,141,1729 0/0:56,0:56:99:0,163,2033 0/0:73,0:73:99:0,205,2513 0/1:29,16:45:99:442,0,863 0/0:36,0:36:99:0,105,1308 0/0:49,0:49:99:0,141,1738 0/0:50,0:50:99:0,141,1778 0/0:73,0:74:99:0,208,2560 0/0:50,0:50:99:0,144,1782 0/0:48,0:48:99:0,141,1741 0/0:55,0:55:99:0,162,1952 0/0:42,0:42:99:0,117,1459 0/0:39,0:39:99:0,111,1371 15 89056292 . G T 2021.78 . AC=4;AF=0.048;AN=84;BaseQRankSum=-1.166;DP=2075;Dels=0.00;FS=15.680;HRun=0;HaplotypeScore=1.2957;InbreedingCoeff=-0.0500;MQ=59.32;MQ0=0;MQRankSum=-1.732;QD=12.96;ReadPosRankSum=-1.112 GT:AD:DP:GQ:PL 0/1:30,17:47:99:462,0,905 0/0:39,0:39:99:0,102,1228 0/0:37,0:38:99:0,111,1343 0/0:64,0:64:99:0,166,2181 0/0:65,0:65:99:0,181,2343 0/0:54,0:54:99:0,150,1941 0/0:33,0:34:93.30:0,93,1204 0/0:51,1:52:99:0,144,1845 0/0:54,0:54:99:0,150,1800 0/0:50,0:50:99:0,126,1558 0/0:51,0:51:99:0,147,1767 0/0:40,0:40:99:0,105,1252 0/0:36,0:36:96.29:0,96,1176 0/0:44,0:44:99:0,123,1466 0/0:135,0:135:99:0,370,4534 0/0:39,0:39:99:0,114,1371 0/0:33,0:33:96.25:0,96,1130 0/0:28,0:28:78.21:0,78,935 0/0:57,0:58:99:0,153,1859 0/0:81,2:83:99:0,194,2668 0/0:70,0:70:99:0,196,2337 0/0:62,0:62:99:0,171,2053 0/0:65,0:67:99:0,178,2288 0/1:18,15:33:99:434,0,549 0/1:13,23:36:99:680,0,405 0/0:46,0:46:99:0,129,1679 0/0:25,0:25:69.19:0,69,817 0/0:45,0:45:99:0,123,1518 0/0:37,0:37:99:0,105,1254 0/0:33,0:33:93.28:0,93,1136 0/0:27,1:28:78.23:0,78,949 0/0:81,0:81:99:0,199,2473 0/0:51,0:51:99:0,126,1541 0/0:39,0:39:99:0,108,1279 0/0:38,0:38:99:0,99,1199 0/0:45,0:45:99:0,120,1480 0/0:70,1:71:99:0,171,2043 0/0:48,0:48:99:0,141,1652 0/0:37,0:37:99:0,105,1230 0/0:50,1:51:99:0,101,1565 0/0:48,0:48:99:0,141,1718 0/1:21,18:40:99:533,0,579 15 89391160 . C A 71027.11 . 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T C 19749.37 . 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C G 16425.80 . 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C T 941.02 . 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A G 18902.54 . 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C T 14654.75 . 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C T 3700.76 . 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C T 3423.93 . 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C T 1242.63 . 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C T 1634.96 . AC=2;AF=0.024;AN=84;BaseQRankSum=8.469;DP=1354;Dels=0.00;FS=1.198;HRun=0;HaplotypeScore=1.0700;InbreedingCoeff=-0.0244;MQ=59.01;MQ0=0;MQRankSum=-0.355;QD=12.02;ReadPosRankSum=3.598 GT:AD:DP:GQ:PL 0/0:31,0:31:90.21:0,90,976 0/0:36,0:36:96.20:0,96,1052 0/0:28,0:29:84.19:0,84,905 0/1:33,28:61:99:802,0,808 0/0:55,0:55:99:0,156,1769 0/0:48,0:48:99:0,129,1464 0/0:46,0:46:99:0,117,1411 0/0:40,0:40:99:0,114,1345 0/0:27,0:27:78.18:0,78,834 0/0:26,0:26:78.19:0,78,853 0/0:20,0:20:57.14:0,57,630 0/0:24,0:24:60.13:0,60,649 0/0:20,0:20:48.13:0,48,564 0/0:22,0:22:60.13:0,60,654 0/0:64,0:65:99:0,168,1852 0/0:26,0:26:66.15:0,66,715 0/0:24,0:24:63.16:0,63,714 0/0:25,0:25:72.18:0,72,793 0/0:39,0:39:99:0,102,1100 0/0:51,0:51:99:0,141,1586 0/0:32,0:33:90.22:0,90,978 0/0:21,0:21:60.13:0,60,637 0/1:41,34:75:99:895,0,1050 0/0:51,0:51:99:0,135,1613 0/0:45,0:45:99:0,123,1459 0/0:37,0:37:93.22:0,93,1070 0/0:25,0:26:66.16:0,66,745 0/0:19,0:19:51.13:0,51,564 0/0:14,0:14:42.11:0,42,472 0/0:29,0:30:81.19:0,81,888 0/0:17,0:17:48.05:0,48,494 0/0:36,0:36:99:0,102,1103 0/0:34,0:34:90.22:0,90,1003 0/0:17,0:17:48.12:0,48,523 0/0:15,0:16:42.10:0,42,459 0/0:24,0:24:60.14:0,60,662 0/0:26,0:27:72.19:0,72,798 0/0:30,0:30:87.22:0,87,967 0/0:18,0:18:51.12:0,51,550 0/0:32,0:32:87.19:0,87,940 0/0:18,0:18:45.11:0,45,515 0/0:19,0:19:51.12:0,51,555 15 89811742 . G A 1132.42 . 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T TG 48.07 . AC=4;AF=0.048;AN=84;BaseQRankSum=4.696;DP=2704;FS=1701.922;HRun=1;HaplotypeScore=164.7335;InbreedingCoeff=-0.0714;MQ=59.16;MQ0=0;MQRankSum=-1.579;QD=0.21;ReadPosRankSum=-16.351 GT:AD:DP:GQ:PL 0/0:47,0:47:26.30:0,26,1043 0/0:58,0:58:52.73:0,53,1334 0/0:49,0:50:59.02:0,59,1063 0/0:113,0:112:46.09:0,46,2495 0/0:104,0:104:99:0,166,2930 0/0:93,0:92:89.54:0,90,2227 0/0:84,0:80:86.05:0,86,2150 0/0:88,0:87:62.89:0,63,2239 0/0:61,0:61:27.60:0,28,1400 0/0:50,0:50:44.87:0,45,1162 0/0:58,0:57:29.90:0,30,1246 0/0:40,0:40:1.79:3,0,880 0/0:42,0:42:59.37:0,59,1032 0/0:51,0:51:34.28:0,34,1233 0/0:149,37:186:26.08:0,26,3664 0/0:46,0:46:51.80:0,52,1049 0/0:30,0:30:59.68:0,60,764 0/0:50,0:50:73.60:0,74,1168 0/1:79,0:79:45.38:45,0,1603 0/0:82,0:82:63.13:0,63,2127 0/1:69,0:69:11.47:11,0,1231 0/0:60,0:59:54.80:0,55,1382 0/0:110,0:110:78.29:0,78,2638 0/0:76,0:73:75.89:0,76,1679 0/0:91,0:90:60.33:0,60,2289 0/0:57,0:55:2.02:0,2,1176 0/1:35,0:35:30.72:31,0,873 0/0:40,0:40:3.46:0,3,692 0/0:30,0:30:14.35:0,14,752 0/0:51,0:51:27.38:0,27,1135 0/0:48,0:48:63.56:0,64,1182 0/0:94,0:94:54.57:0,55,2071 0/0:39,0:39:61.87:0,62,995 0/0:48,0:48:37.17:0,37,1057 0/0:61,0:61:30.46:0,30,1447 0/0:47,0:47:82.71:0,83,1154 0/0:89,0:89:15.43:0,15,1876 0/0:53,0:53:83.56:0,84,1283 0/1:50,0:51:52.07:52,0,1083 0/0:52,0:52:5.20:0,5,1158 0/0:51,0:51:29.21:0,29,1264 0/0:40,0:40:65.51:0,66,932 15 89860653 . G T 1508.88 . 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CTCATCCGA C 22.20 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.972;DP=1142;FS=81.348;HRun=0;HaplotypeScore=181.0599;InbreedingCoeff=-0.0121;MQ=54.69;MQ0=0;MQRankSum=2.996;QD=0.62;ReadPosRankSum=-5.732 GT:AD:DP:GQ:PL 0/0:18,0:18:54.18:0,54,2312 0/0:26,0:26:66.23:0,66,2718 0/0:27,0:27:81.28:0,81,3448 0/0:35,0:35:73.72:0,74,3972 0/0:35,0:35:75.29:0,75,4030 0/0:24,0:22:66.23:0,66,2719 0/0:19,0:19:57.18:0,57,2085 0/0:28,0:27:78.25:0,78,3178 0/0:24,0:24:66.23:0,66,2829 0/0:15,0:15:39.13:0,39,1745 0/0:25,0:25:63.21:0,63,2319 0/0:20,0:20:57.19:0,57,2246 0/0:24,0:24:69.22:0,69,2542 0/0:26,0:26:68.76:0,69,3039 0/0:66,0:66:99:0,199,8301 0/0:31,0:31:90.31:0,90,3811 0/0:26,0:26:78:0,78,3214 0/0:27,0:27:81.27:0,81,3381 0/0:46,0:46:99:0,129,5522 0/0:37,0:37:99:0,102,4016 0/0:25,0:25:72.25:0,72,3052 0/0:24,0:24:66.23:0,66,2918 0/0:32,0:32:88.84:0,89,3254 0/0:20,0:20:60.21:0,60,2365 0/0:18,0:18:51.17:0,51,2066 0/0:20,0:20:48.16:0,48,2033 0/0:18,0:18:51.16:0,51,1978 0/0:29,0:29:55.20:0,55,3236 0/0:25,0:25:66.23:0,66,2844 0/0:28,0:28:78.26:0,78,3074 0/1:24,12:36:77.43:77,0,2546 0/0:36,0:36:44.98:0,45,3199 0/0:22,0:22:54.18:0,54,2242 0/0:24,0:24:72.25:0,72,2931 0/0:24,0:24:47.56:0,48,2416 0/0:25,0:25:66.23:0,66,2879 0/0:38,0:37:99:0,99,3787 0/0:26,0:26:72.25:0,72,2863 0/0:26,0:26:75.25:0,75,2846 0/0:21,0:21:57.20:0,57,2333 0/0:12,0:12:36.12:0,36,1384 0/0:34,0:34:90.30:0,90,3725 15 89862570 . G C 77.03 . 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A C 1696.38 . AC=34;AF=0.405;AN=84;BaseQRankSum=-15.480;DP=1573;Dels=0.01;FS=1113.672;HRun=1;HaplotypeScore=5.2521;InbreedingCoeff=-0.6699;MQ=56.99;MQ0=0;MQRankSum=2.697;QD=1.31;ReadPosRankSum=-15.450 GT:AD:DP:GQ:PL 0/1:18,6:24:33.20:33,0,536 0/1:21,15:36:72.23:72,0,538 0/1:23,11:34:24.86:25,0,679 0/1:25,20:45:44.85:45,0,792 0/1:30,17:48:54.26:54,0,834 0/1:18,15:33:9.25:9,0,565 0/1:16,10:26:4.02:4,0,446 0/1:24,15:39:24.76:25,0,732 0/1:21,13:34:25.93:26,0,623 0/1:14,18:32:99:101,0,405 0/1:16,18:34:73:73,0,507 0/1:15,13:28:99:153,0,478 0/0:21,7:28:8.20:0,8,650 0/1:22,16:38:99:120,0,688 0/1:67,46:113:65.14:65,0,2037 0/1:29,10:39:17.09:17,0,932 0/0:23,13:36:16.03:0,16,752 0/0:26,8:34:76.78:0,77,891 0/1:44,14:58:30.67:31,0,1343 0/0:36,18:54:5.36:0,5,1028 0/1:24,15:39:83.81:84,0,734 0/1:25,13:38:54.85:55,0,704 0/1:24,23:47:99:100,0,594 0/0:16,11:27:12.49:0,12,513 0/1:15,13:28:55.36:55,0,389 0/1:17,11:28:23.36:23,0,460 0/1:15,11:26:79.78:80,0,418 0/1:22,15:37:58.24:58,0,657 0/1:22,19:41:41.13:41,0,681 0/1:22,13:35:90.46:90,0,632 0/0:20,2:22:57.16:0,57,665 0/1:27,24:51:4.68:5,0,765 0/1:17,14:31:40.15:40,0,495 0/1:21,13:34:36.18:36,0,587 0/1:18,12:30:63.12:63,0,513 0/1:24,14:38:62.76:63,0,770 0/1:32,18:50:46.93:47,0,846 0/0:23,8:31:37.85:0,38,771 0/1:21,12:34:54.60:55,0,670 0/1:17,14:31:99:112,0,475 0/1:9,4:13:6.91:7,0,268 0/0:27,10:37:9.09:0,9,824 15 89870178 . C A 2509.66 . AC=2;AF=0.024;AN=84;BaseQRankSum=-10.596;DP=6166;DS;Dels=0.00;FS=14.995;HRun=0;HaplotypeScore=3.9355;InbreedingCoeff=-0.0244;MQ=59.18;MQ0=0;MQRankSum=-0.357;QD=13.35;ReadPosRankSum=0.714 GT:AD:DP:GQ:PL 0/0:99,0:99:99:0,286,3497 0/0:92,0:92:99:0,265,3276 0/0:92,0:92:99:0,262,3251 0/0:250,0:250:99:0,689,9014 0/0:250,0:250:99:0,692,9081 0/0:248,1:250:99:0,659,8724 0/0:236,0:236:99:0,629,8257 0/0:249,0:249:99:0,683,8990 0/0:89,0:89:99:0,253,3130 0/0:79,0:79:99:0,220,2682 0/0:93,0:93:99:0,259,3250 0/0:88,0:88:99:0,247,3088 0/0:76,0:76:99:0,220,2697 0/0:87,0:88:99:0,238,2961 0/0:248,2:250:99:0,689,8441 0/0:102,0:102:99:0,289,3592 0/0:107,0:107:99:0,301,3713 0/0:88,0:88:99:0,238,2965 0/0:235,0:235:99:0,656,7986 0/0:242,0:242:99:0,638,8006 0/0:231,1:232:99:0,632,7749 0/0:131,0:131:99:0,370,4609 0/0:248,0:248:99:0,671,8923 0/0:240,0:241:99:0,665,8786 0/0:249,0:250:99:0,680,8960 0/0:246,1:247:99:0,654,8967 0/0:59,0:59:99:0,150,1916 0/0:92,0:93:99:0,262,3264 0/0:90,0:90:99:0,253,3105 0/1:45,52:98:99:1468,0,1156 0/1:48,42:90:99:1104,0,1363 0/0:223,0:223:99:0,602,7642 0/0:141,0:141:99:0,397,4873 0/0:82,0:82:99:0,232,2903 0/0:84,0:84:99:0,232,2880 0/0:123,0:123:99:0,340,4197 0/0:212,1:213:99:0,572,6949 0/0:91,0:91:99:0,259,3252 0/0:96,0:96:99:0,268,3360 0/0:95,1:96:99:0,265,3239 0/0:91,0:91:99:0,262,3238 0/0:91,0:91:99:0,253,3106 15 89873379 . T C 724.64 . AC=17;AF=0.202;AN=84;BaseQRankSum=-23.889;DP=2373;Dels=0.00;FS=997.361;HRun=2;HaplotypeScore=1.3342;InbreedingCoeff=-0.2756;MQ=58.12;MQ0=0;MQRankSum=0.232;QD=0.86;ReadPosRankSum=-16.165 GT:AD:DP:GQ:PL 0/1:16,17:33:99:145,0,444 0/0:35,19:55:34.10:0,34,1096 0/1:27,15:42:49.69:50,0,824 0/0:45,33:78:38.15:0,38,1548 0/1:43,30:73:99:122,0,1422 0/0:37,18:55:9.82:0,10,1208 0/0:25,15:40:49.53:0,50,897 0/1:30,24:54:12.63:13,0,902 0/0:32,15:47:84.26:0,84,1022 0/1:34,20:54:99:128,0,989 0/1:16,12:28:87.73:88,0,498 0/0:35,11:46:63.66:0,64,1078 0/0:31,14:45:61.81:0,62,999 0/1:26,24:50:29.14:29,0,819 0/0:100,47:147:35.76:0,36,2671 0/0:36,17:53:2.83:0,0,1037 0/0:44,16:60:49.06:0,49,1449 0/0:30,19:49:7.27:0,7,910 0/0:53,17:70:15.01:0,15,1653 0/0:63,27:91:51.25:0,51,1852 0/1:48,18:66:19.28:19,0,1326 0/1:40,20:60:11.93:12,0,1142 0/0:43,29:72:3.78:0,4,1382 0/0:32,11:43:42.94:0,43,1036 0/0:48,22:70:87.65:0,88,1570 0/0:39,20:59:87.24:0,87,1298 0/0:29,12:41:28.68:0,29,841 0/1:22,21:43:87.30:87,0,666 0/0:17,12:29:45.14:0,45,562 0/1:33,16:49:5.83:6,0,898 0/0:32,17:50:12.37:0,12,997 0/0:63,26:89:99:0,117,1869 0/1:32,20:52:15.38:15,0,927 0/1:22,12:35:3.62:4,0,615 0/0:33,17:50:53.50:0,54,976 0/1:28,16:44:22.25:22,0,851 0/0:70,22:92:1.79:3,0,2078 0/0:39,21:61:42.41:0,42,1051 0/1:33,18:51:30.76:31,0,928 0/1:42,19:61:39.16:39,0,1133 0/0:27,12:39:59.27:0,59,920 0/1:27,20:47:67.98:68,0,794 15 89873481 . A C 1040.64 . AC=29;AF=0.345;AN=84;BaseQRankSum=-19.568;DP=1056;Dels=0.00;FS=205.130;HRun=2;HaplotypeScore=1.1133;InbreedingCoeff=-0.5287;MQ=58.41;MQ0=0;MQRankSum=-0.586;QD=1.39;ReadPosRankSum=-5.523 GT:AD:DP:GQ:PL 0/1:14,6:20:11.22:11,0,369 0/0:13,10:23:17.40:0,17,394 0/1:8,10:18:54.83:55,0,202 0/1:14,21:35:99:103,0,264 0/0:20,20:40:4.72:0,5,608 0/0:12,16:28:14.39:0,14,362 0/1:12,9:21:30.50:30,0,341 0/1:13,7:20:44.39:44,0,307 0/1:6,11:17:74.65:75,0,170 0/1:12,12:24:17.14:17,0,361 0/1:4,10:15:61.57:62,0,117 0/0:15,7:22:39.11:0,39,456 0/1:6,8:14:9.54:10,0,180 0/0:4,9:13:12.04:0,12,142 0/1:35,26:62:62.35:62,0,1028 0/1:14,11:25:16.86:17,0,432 0/1:8,10:18:69.62:70,0,214 0/1:8,13:21:28.04:28,0,223 0/1:19,15:34:79.93:80,0,491 0/1:27,23:51:31.24:31,0,721 0/1:14,17:31:92.27:92,0,364 0/1:10,16:27:26.05:26,0,305 0/1:25,32:57:3.59:4,0,691 0/0:7,11:18:18.03:0,18,193 0/1:11,16:27:50.64:51,0,258 0/1:12,10:22:21.29:21,0,237 0/1:7,13:20:52.91:53,0,211 0/1:12,10:22:51.46:51,0,333 0/0:10,7:17:30.09:0,30,359 0/1:11,9:20:73.24:73,0,314 0/1:9,6:16:21.32:21,0,198 0/0:30,12:42:57.63:0,58,967 0/0:18,8:26:29.49:0,29,591 0/1:16,6:22:4.16:4,0,464 0/1:10,5:15:4.72:5,0,317 0/0:10,14:25:19.60:0,20,203 0/1:11,12:23:71.47:71,0,282 0/1:15,7:22:11.10:11,0,426 0/0:12,6:18:4.41:0,4,303 0/1:14,13:27:30.86:31,0,401 0/0:13,4:17:36.10:0,36,418 0/0:9,12:21:2.76:1,0,248 15 90023558 . G A 20606.74 . AC=10;AF=0.119;AN=84;BaseQRankSum=6.492;DP=6474;DS;Dels=0.00;FS=10.383;HRun=0;HaplotypeScore=3.7462;InbreedingCoeff=-0.1351;MQ=59.32;MQ0=0;MQRankSum=0.708;QD=13.70;ReadPosRankSum=1.400 GT:AD:DP:GQ:PL 0/0:143,0:143:99:0,400,4556 0/0:140,0:142:99:0,385,4411 0/0:106,0:106:99:0,298,3455 0/1:125,124:249:99:3553,0,3745 0/1:136,86:222:99:2397,0,4111 0/0:214,0:214:99:0,572,7243 0/0:182,0:182:99:0,497,6221 0/0:151,1:152:99:0,383,5231 0/0:120,0:120:99:0,325,3768 0/0:140,3:143:99:0,274,4250 0/0:126,0:126:99:0,340,4002 0/0:140,0:140:99:0,385,4511 0/0:99,1:101:99:0,230,3065 0/1:54,57:111:99:1641,0,1437 0/0:250,0:250:99:0,686,7946 0/0:133,0:133:99:0,388,4484 0/0:155,1:156:99:0,378,4838 0/0:107,0:107:99:0,307,3517 0/0:203,0:203:99:0,526,6104 0/0:215,0:215:99:0,551,6623 0/1:107,110:217:99:2846,0,2629 0/1:44,70:114:99:1987,0,1113 0/0:238,0:238:99:0,653,8266 0/0:150,0:150:99:0,424,5331 0/0:190,0:190:99:0,533,6736 0/0:183,2:185:99:0,419,6043 0/0:87,0:87:99:0,241,2759 0/0:119,0:120:99:0,337,3870 0/1:54,56:110:99:1552,0,1457 0/0:125,0:125:99:0,325,3840 0/1:68,61:129:99:1702,0,1809 0/0:203,0:203:99:0,511,6112 0/0:139,0:139:99:0,367,4297 0/1:51,61:112:99:1821,0,1310 0/0:134,0:135:99:0,361,4267 0/1:67,67:134:99:1716,0,1806 0/0:228,0:229:99:0,578,6879 0/0:129,0:129:99:0,364,4167 0/1:56,50:106:99:1391,0,1535 0/0:110,0:110:99:0,301,3485 0/0:134,0:134:99:0,367,4229 0/0:163,0:163:99:0,445,5184 15 90126121 . C T 80313.23 . AC=53;AF=0.631;AN=84;BaseQRankSum=24.816;DP=3768;DS;Dels=0.00;FS=1.740;HRun=0;HaplotypeScore=1.3628;InbreedingCoeff=0.0286;MQ=59.09;MQ0=0;MQRankSum=0.007;QD=24.86;ReadPosRankSum=0.683 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2330,190,0 1/1:0,52:52:99:1755,138,0 0/1:25,23:48:99:709,0,663 1/1:0,142:142:99:5009,400,0 0/1:77,74:152:99:2187,0,2325 1/1:0,131:131:99:4657,361,0 1/1:0,121:121:99:4282,334,0 1/1:0,136:136:99:4862,382,0 0/0:77,1:78:99:0,175,2432 0/1:36,45:81:99:1331,0,937 0/1:39,25:64:99:684,0,1087 1/1:0,60:60:99:2150,175,0 0/1:20,29:49:99:878,0,549 0/1:42,33:75:99:940,0,1070 0/1:132,107:239:99:2998,0,3323 0/0:60,0:60:99:0,165,1909 0/1:36,38:74:99:1095,0,1010 0/1:33,31:64:99:899,0,905 0/0:129,1:132:99:0,334,4019 0/0:109,0:109:99:0,289,3348 1/1:0,98:98:99:3315,268,0 0/1:36,32:68:99:883,0,926 1/1:0,147:147:99:5289,418,0 1/1:0,99:99:99:3515,274,0 1/1:0,141:141:99:4837,382,0 1/1:1,125:126:99:4208,291,0 0/1:21,26:47:99:807,0,516 1/1:0,70:70:99:2473,199,0 0/1:34,30:64:99:860,0,976 0/1:30,40:70:99:1162,0,796 1/1:0,58:58:99:2072,166,0 0/1:51,69:120:99:1879,0,1348 0/0:85,2:88:99:0,160,2591 0/1:38,21:59:99:550,0,1101 0/0:71,0:71:99:0,196,2266 1/1:0,80:80:99:2816,229,0 0/1:59,52:111:99:1371,0,1561 0/1:25,42:67:99:1268,0,597 0/1:33,26:59:99:776,0,897 1/1:0,69:69:99:2402,193,0 0/1:32,27:59:99:805,0,883 1/1:0,63:63:99:2260,181,0 15 90185491 . C T 410.16 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.817;DP=913;Dels=0.00;FS=2.226;HRun=1;HaplotypeScore=0.5440;InbreedingCoeff=-0.0126;MQ=58.82;MQ0=0;MQRankSum=-0.334;QD=16.41;ReadPosRankSum=0.735 GT:AD:DP:GQ:PL 0/0:22,0:22:60.18:0,60,756 0/0:14,0:14:39.11:0,39,483 0/0:9,0:9:24.08:0,24,302 0/0:62,0:62:99:0,181,2409 0/0:68,0:68:99:0,181,2423 0/0:36,0:36:93.31:0,93,1270 0/0:27,0:27:69.23:0,69,938 0/0:38,0:38:99:0,105,1399 0/0:17,0:17:45.14:0,45,569 0/0:9,0:9:27.09:0,27,339 0/0:11,0:11:27.09:0,27,353 0/0:12,0:12:36.11:0,36,447 0/0:9,0:9:21.06:0,21,273 0/0:9,0:9:24.08:0,24,309 0/0:49,0:49:99:0,138,1730 0/0:11,0:11:33.10:0,33,419 0/0:13,0:13:39.12:0,39,482 0/0:16,0:16:48.15:0,48,611 0/0:19,0:19:48.15:0,48,619 0/0:33,0:33:78.25:0,78,1004 0/0:17,0:17:36.11:0,36,453 0/1:9,16:25:99:456,0,233 0/0:54,0:54:99:0,150,2039 0/0:29,0:29:75.24:0,75,1020 0/0:36,0:36:99:0,99,1334 0/0:26,0:26:72.23:0,72,959 0/0:11,0:11:33.09:0,33,409 0/0:17,0:17:45.14:0,45,576 0/0:6,0:6:18.05:0,18,214 0/0:12,0:12:30.10:0,30,387 0/0:12,0:12:33.11:0,33,429 0/0:26,0:26:72.23:0,72,929 0/0:15,0:15:36.11:0,36,468 0/0:13,0:13:39.13:0,39,498 0/0:14,0:14:42.12:0,42,500 0/0:13,0:13:36.12:0,36,467 0/0:42,0:42:99:0,117,1448 0/0:17,0:17:33.08:0,33,409 0/0:14,0:14:39.12:0,39,492 0/0:9,0:9:27.08:0,27,336 0/0:8,0:8:24.07:0,24,292 0/0:13,0:13:39.12:0,39,492 15 90189161 . C T 1776.23 . AC=1;AF=0.012;AN=84;BaseQRankSum=-7.533;DP=2546;Dels=0.00;FS=19.390;HRun=1;HaplotypeScore=1.5693;InbreedingCoeff=-0.0120;MQ=58.93;MQ0=0;MQRankSum=2.246;QD=18.12;ReadPosRankSum=2.091 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,123,1548 0/0:53,0:53:99:0,144,1801 0/0:39,0:39:99:0,111,1406 0/0:110,0:110:99:0,319,4208 0/0:87,0:87:99:0,259,3437 0/0:84,0:84:99:0,250,3297 0/0:69,0:69:99:0,199,2641 0/0:79,0:79:99:0,226,2966 0/0:49,0:49:99:0,144,1795 0/0:38,0:38:99:0,108,1353 0/0:48,0:48:99:0,141,1763 0/0:43,0:43:99:0,123,1535 0/0:42,0:42:99:0,120,1470 0/0:36,0:36:99:0,102,1289 0/0:154,0:155:99:0,427,5367 0/0:57,0:57:99:0,159,2008 0/0:47,0:47:99:0,138,1756 0/0:54,0:54:99:0,156,1907 0/0:91,0:92:99:0,262,3216 0/0:98,0:98:99:0,268,3394 0/0:98,0:98:99:0,268,3403 0/0:43,0:43:99:0,129,1620 0/1:39,59:98:99:1822,0,1256 0/0:49,0:49:99:0,144,1897 0/0:85,0:85:99:0,247,3312 0/0:60,1:61:99:0,145,2268 0/0:41,0:41:99:0,117,1464 0/0:35,0:35:99:0,102,1260 0/0:37,0:37:99:0,105,1320 0/0:55,0:55:99:0,156,1964 0/0:48,0:48:99:0,141,1734 0/0:82,0:82:99:0,235,2942 0/0:57,0:57:99:0,160,2018 0/0:39,0:39:99:0,111,1397 0/0:45,0:45:99:0,135,1663 0/0:46,0:46:99:0,138,1746 0/0:89,0:89:99:0,256,3120 0/0:63,0:63:99:0,184,2244 0/0:34,1:35:99:0,102,1258 0/0:34,0:34:99:0,102,1258 0/0:36,0:36:99:0,105,1284 0/0:44,0:44:99:0,120,1520 15 90293392 . G C 63.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=-15.830;DP=3035;Dels=0.00;FS=1178.332;HRun=1;HaplotypeScore=2.2430;InbreedingCoeff=-0.0472;MQ=59.15;MQ0=0;MQRankSum=1.158;QD=0.69;ReadPosRankSum=-16.322 GT:AD:DP:GQ:PL 0/0:42,16:58:60.44:0,60,1381 0/0:38,16:54:0.58:8,0,990 0/0:28,1:29:69.21:0,69,849 0/0:144,84:228:99:0,252,4617 0/0:116,51:167:99:0,190,3805 0/0:78,35:113:99:0,149,2657 0/0:71,27:98:99:0,124,2349 0/0:97,31:128:99:0,211,3116 0/0:46,20:66:84.62:0,85,1258 0/0:35,16:51:58.07:0,58,1025 0/0:34,11:45:42.01:0,42,1039 0/0:26,2:28:63.18:0,63,747 0/0:25,11:36:69.15:0,69,790 0/0:20,12:32:0.54:9,0,567 0/0:106,49:156:66.97:0,67,3017 0/0:30,12:42:80.99:0,81,975 0/0:23,14:37:38.50:0,38,717 0/0:19,17:36:23.70:0,24,512 0/0:59,17:76:92.41:0,92,1699 0/0:71,28:99:99:0,110,1927 0/0:66,28:94:99:0,142,1873 0/0:46,21:67:29.97:0,30,1234 0/0:163,12:175:99:0,421,5541 0/0:63,37:100:99:0,132,1943 0/0:78,33:111:99:0,193,2553 0/0:75,32:107:51.92:0,52,2367 0/0:24,11:35:33.57:0,34,714 0/0:33,11:44:22.25:0,22,910 0/0:28,14:42:63.18:0,63,769 0/0:30,16:46:23.93:0,24,905 0/0:27,2:29:60.17:0,60,723 0/0:69,28:97:29.56:0,30,1759 0/0:53,28:81:99:0,108,1573 0/0:42,13:55:39.73:0,40,1259 0/0:32,7:39:59.44:0,59,1010 0/1:36,21:57:92.78:93,0,898 0/0:66,19:85:99:0,128,2055 0/0:32,11:43:58.70:0,59,1022 0/1:21,14:36:30.55:31,0,584 0/0:20,12:32:48.15:0,48,600 0/0:28,11:39:24.06:0,24,889 0/0:31,11:42:19.08:0,19,849 15 90293392 . G GC 133.49 . AC=8;AF=0.095;AN=84;BaseQRankSum=9.328;DP=3271;FS=1614.341;HRun=1;HaplotypeScore=304.5743;InbreedingCoeff=-0.1257;MQ=58.91;MQ0=0;MQRankSum=2.050;QD=0.27;ReadPosRankSum=-22.929 GT:AD:DP:GQ:PL 0/0:58,0:58:48.46:0,48,1397 0/1:54,0:54:63.43:63,0,1091 0/1:27,14:41:27.83:28,0,706 0/0:241,0:241:90.09:0,90,4517 0/0:178,0:178:64.92:0,65,3671 0/0:116,0:115:99:0,139,2390 0/0:106,0:104:99:0,122,2249 0/0:131,0:128:82.23:0,82,2897 0/0:72,0:72:83.29:0,83,1399 0/0:50,0:50:23.44:0,23,1033 0/0:51,0:50:39.29:0,39,1066 0/0:22,10:32:9.21:0,9,585 0/0:40,0:40:66.23:0,66,856 0/1:37,0:37:16.70:17,0,530 0/0:159,1:160:1.13:5,0,3204 0/0:43,0:43:28.32:0,28,878 0/0:39,0:39:21.33:0,21,724 0/0:36,0:36:0.25:0,0,570 0/0:84,1:85:20.56:0,21,1666 0/0:104,0:104:99:0,126,2093 0/0:107,0:107:13.47:0,13,1871 0/0:72,0:72:11.54:0,12,1296 0/0:173,64:237:99:0,119,4726 0/0:103,0:102:52.66:0,53,1823 0/0:115,0:112:43.88:0,44,2231 0/1:108,0:107:9.86:10,0,2321 0/0:35,0:35:38.15:0,38,696 0/0:50,0:50:25.48:0,25,897 0/0:43,0:43:50.17:0,50,769 0/1:46,0:46:11.55:12,0,873 0/0:26,8:34:15.39:0,15,641 0/1:103,0:103:30.58:31,0,1907 0/0:84,0:84:18.02:0,18,1505 0/0:57,0:57:28.54:0,29,1314 0/0:41,0:41:39.47:0,39,1008 0/1:58,0:58:62:62,0,1073 0/0:93,1:94:73.48:0,73,2026 0/0:49,0:47:54.25:0,54,955 0/1:40,0:40:34.61:35,0,681 0/0:35,0:35:46.95:0,47,623 0/0:43,0:43:17.62:0,18,699 0/0:43,0:43:49.31:0,49,880 15 90347173 . C G 1214.21 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.109;DP=2037;Dels=0.00;FS=2.662;HRun=2;HaplotypeScore=1.4246;InbreedingCoeff=-0.0244;MQ=58.63;MQ0=0;MQRankSum=1.129;QD=14.12;ReadPosRankSum=-0.784 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,120,1442 0/0:39,0:39:96.26:0,96,1149 0/0:34,0:34:93.23:0,93,1079 0/0:92,0:92:99:0,223,2762 0/0:67,0:67:99:0,177,2187 0/0:37,0:37:90.25:0,90,1130 0/0:34,0:34:84.26:0,84,1053 0/0:65,0:66:99:0,163,2067 0/0:29,0:29:66.19:0,66,829 0/0:41,0:41:99:0,105,1256 0/0:41,0:41:99:0,111,1328 0/0:28,0:28:81.19:0,81,909 0/0:37,0:37:99:0,102,1162 0/0:44,0:45:99:0,120,1431 0/0:158,0:158:99:0,397,4654 0/0:48,0:48:99:0,129,1534 0/0:38,0:38:99:0,102,1218 0/0:56,0:56:99:0,150,1701 0/0:50,1:51:99:0,135,1575 0/0:53,0:53:99:0,147,1703 0/0:57,0:57:99:0,147,1792 0/0:34,0:34:81.21:0,81,965 0/0:58,0:58:99:0,156,1930 0/0:49,0:50:99:0,117,1504 0/0:51,0:51:99:0,138,1735 0/0:49,0:49:99:0,111,1439 0/1:18,19:37:99:551,0,453 0/0:32,0:32:87.16:0,87,963 0/1:23,26:49:99:725,0,619 0/0:53,0:53:99:0,135,1560 0/0:44,0:44:99:0,120,1383 0/0:60,0:60:99:0,147,1765 0/0:38,0:38:96.26:0,96,1153 0/0:41,0:41:99:0,105,1217 0/0:44,0:44:99:0,126,1443 0/0:47,0:47:99:0,126,1510 0/0:55,0:55:99:0,156,1840 0/0:37,0:37:99:0,102,1155 0/0:45,0:45:99:0,114,1394 0/0:32,0:32:84.23:0,84,994 0/0:46,0:46:99:0,123,1443 0/0:38,0:38:99:0,102,1198 15 90348682 . A T 2001.93 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.945;DP=1375;Dels=0.00;FS=0.490;HRun=1;HaplotypeScore=1.7617;InbreedingCoeff=-0.0244;MQ=59.11;MQ0=0;MQRankSum=-0.485;QD=16.54;ReadPosRankSum=0.860 GT:AD:DP:GQ:PL 0/0:23,0:24:60.18:0,60,742 0/0:27,0:27:75.20:0,75,888 0/0:27,0:28:72.22:0,72,889 0/1:22,38:60:99:1127,0,561 0/1:28,33:61:99:937,0,742 0/0:27,0:27:72.22:0,72,920 0/0:21,0:21:60.17:0,60,726 0/0:46,0:46:99:0,117,1469 0/0:31,0:31:84.26:0,84,1018 0/0:18,0:18:54.16:0,54,656 0/0:28,0:28:78.24:0,78,961 0/0:23,0:23:57.17:0,57,707 0/0:28,0:28:78.24:0,78,956 0/0:29,0:29:69.18:0,69,856 0/0:95,0:95:99:0,247,3005 0/0:27,0:27:78.23:0,78,937 0/0:30,0:30:81.25:0,81,997 0/0:29,0:29:87.26:0,87,1050 0/0:29,0:29:72.21:0,72,875 0/0:52,0:52:99:0,141,1745 0/0:40,0:40:99:0,105,1282 0/0:31,0:31:81.23:0,81,968 0/0:51,0:51:99:0,126,1578 0/0:28,0:28:78.23:0,78,980 0/0:38,0:38:99:0,105,1301 0/0:28,0:28:69.21:0,69,859 0/0:24,0:24:66.20:0,66,811 0/0:18,0:18:51.15:0,51,618 0/0:18,0:18:54.16:0,54,641 0/0:33,0:33:93.26:0,93,1112 0/0:29,0:29:78.25:0,78,982 0/0:37,0:38:93.28:0,93,1143 0/0:28,0:28:75.22:0,75,930 0/0:33,0:33:99:0,99,1176 0/0:29,0:29:75.21:0,75,919 0/0:22,0:22:63.18:0,63,763 0/0:34,0:35:96.29:0,96,1179 0/0:36,0:36:96.28:0,96,1166 0/0:21,0:21:63.19:0,63,760 0/0:34,0:34:87.23:0,87,1042 0/0:20,0:20:51.15:0,51,622 0/0:27,0:28:81.22:0,81,972 15 90622936 . G A 1018.02 . 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T C 20560.77 . 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T G 242.01 . 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G A 144.07 . 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C T 373.96 . 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A C 3763.61 . AC=37;AF=0.440;AN=84;BaseQRankSum=-3.095;DP=327;Dels=0.00;FS=0.876;HRun=1;HaplotypeScore=0.2110;InbreedingCoeff=0.0965;MQ=58.37;MQ0=0;MQRankSum=0.413;QD=17.59;ReadPosRankSum=0.163 GT:AD:DP:GQ:PL 0/0:7,0:7:18.05:0,18,222 0/0:6,0:6:18.06:0,18,221 0/0:5,0:5:15.05:0,15,183 0/1:5,4:9:99:115,0,153 0/1:5,2:7:58.43:58,0,127 1/1:0,5:5:12.04:154,12,0 0/1:2,1:3:32.56:33,0,39 0/0:2,0:2:6.02:0,6,74 1/1:0,6:6:18.05:218,18,0 0/1:4,3:7:97.50:98,0,101 1/1:0,3:3:9.02:97,9,0 0/1:2,3:5:60.55:88,0,61 0/1:1,4:5:21.93:133,0,22 0/1:6,4:10:97.29:97,0,191 0/1:9,15:24:99:430,0,206 0/0:8,0:8:21.06:0,21,254 0/1:0,2:2:0.97:70,6,0 1/1:0,7:7:18.05:220,18,0 0/1:11,7:18:99:184,0,307 0/0:22,0:22:57.18:0,57,702 0/0:13,0:13:39.12:0,39,479 0/1:4,1:5:16.51:17,0,133 0/1:4,2:7:57.14:57,0,128 0/0:4,0:4:12.04:0,12,147 0/0:10,0:10:27.08:0,27,329 0/0:5,0:5:15.04:0,15,183 0/1:1,3:4:21.40:94,0,21 0/0:6,0:6:18.06:0,18,221 1/1:0,6:6:15.04:179,15,0 0/0:9,0:9:24.07:0,24,292 0/0:10,0:10:24.07:0,24,299 0/1:11,1:12:6.88:7,0,325 0/1:5,7:12:99:152,0,148 1/1:0,10:10:30.08:347,30,0 1/1:0,5:5:15.04:177,15,0 0/1:5,6:11:99:147,0,132 0/1:5,3:9:50.95:51,0,151 0/0:6,0:6:18.06:0,18,224 0/1:3,3:6:75.62:76,0,91 1/1:0,9:9:27.06:297,27,0 0/1:2,2:4:58.38:64,0,58 1/1:0,3:3:9.03:105,9,0 15 90794102 . G A 43377.11 . 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T G 391.32 . 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C T 1216.40 . 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C G 117.25 . AC=11;AF=0.131;AN=84;BaseQRankSum=-10.517;DP=820;Dels=0.00;FS=175.660;HRun=1;HaplotypeScore=0.4360;InbreedingCoeff=-0.1954;MQ=58.28;MQ0=0;MQRankSum=-0.252;QD=0.66;ReadPosRankSum=-4.847 GT:AD:DP:GQ:PL 0/0:11,4:15:30.09:0,30,375 0/0:10,2:12:27.08:0,27,335 0/1:4,5:9:13.62:14,0,124 0/0:8,8:16:1.92:3,0,257 0/0:7,15:22:21.06:0,21,274 0/0:6,9:15:11.83:0,12,139 0/0:9,6:15:21.07:0,21,287 0/0:7,5:12:18.06:0,18,242 0/0:14,9:23:1.97:2,0,291 0/0:8,4:12:24.07:0,24,291 0/1:11,6:17:11.18:11,0,240 0/0:12,7:19:33.10:0,33,404 0/0:12,8:20:2.84:0,0,320 0/1:9,10:19:7.58:8,0,206 0/0:43,33:76:81.73:0,82,1298 0/0:13,5:18:10.39:0,10,336 0/0:12,3:15:6.42:0,6,354 0/0:17,7:24:41.85:0,42,496 0/1:8,7:15:72.06:72,0,190 0/0:36,12:49:69.21:0,69,866 0/0:16,15:31:14.49:0,14,456 0/0:10,7:17:21.05:0,21,245 0/0:10,7:17:1.41:0,1,300 0/0:7,5:12:15.04:0,15,189 0/0:5,6:11:12.04:0,12,148 0/1:6,8:14:16.51:17,0,138 0/1:9,5:14:6.52:7,0,241 0/0:12,4:16:15.05:0,15,190 0/0:9,7:16:21.02:0,21,232 0/1:7,7:14:32.30:32,0,169 0/0:9,7:16:24.05:0,24,287 0/0:30,14:44:2.97:0,3,720 0/0:13,4:17:27.08:0,27,330 0/0:9,9:18:24.07:0,24,300 0/1:18,7:25:13.16:13,0,419 0/1:13,8:21:29.82:30,0,311 0/0:14,6:20:17.43:0,17,458 0/1:14,9:23:19.92:20,0,394 0/0:4,6:10:9.03:0,9,105 0/0:12,8:20:27.08:0,27,327 0/1:5,3:8:19.31:19,0,137 0/0:9,4:13:15.05:0,15,192 15 91326099 . C T 2306.80 . 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G A 14563.72 . AC=17;AF=0.202;AN=84;BaseQRankSum=-1.806;DP=2699;Dels=0.00;FS=21.108;HRun=0;HaplotypeScore=0.7151;InbreedingCoeff=0.0413;MQ=59.50;MQ0=0;MQRankSum=-0.012;QD=16.78;ReadPosRankSum=0.384 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,147,1824 0/0:51,0:51:99:0,138,1673 0/1:33,20:53:99:555,0,908 0/0:93,0:93:99:0,265,3435 0/0:72,0:72:99:0,208,2717 0/0:92,0:92:99:0,253,3281 0/0:95,0:95:99:0,265,3492 0/0:76,0:76:99:0,217,2800 1/1:0,50:50:99:1824,147,0 0/1:23,22:45:99:663,0,615 1/1:0,43:43:99:1484,117,0 0/0:61,0:61:99:0,171,2083 0/0:53,0:53:99:0,150,1792 0/0:64,0:64:99:0,159,1998 0/1:77,74:152:99:2046,0,2101 0/1:10,12:22:99:346,0,294 0/0:70,0:70:99:0,190,2340 0/0:72,0:72:99:0,205,2495 0/1:43,35:78:99:1039,0,1238 0/1:20,39:59:99:1076,0,524 0/0:67,0:67:99:0,178,2208 0/0:48,1:49:99:0,103,1613 0/0:95,0:95:99:0,268,3540 0/0:78,0:78:99:0,211,2733 0/0:108,0:108:99:0,295,3898 0/0:73,0:73:99:0,208,2705 0/0:44,0:44:99:0,114,1415 0/1:20,40:60:99:1208,0,541 0/0:45,1:46:92.38:0,92,1461 0/1:24,21:45:99:637,0,696 0/1:25,17:42:99:506,0,792 0/0:77,0:78:99:0,196,2348 0/0:53,0:53:99:0,147,1781 0/0:65,0:65:99:0,181,2204 0/0:61,0:61:99:0,168,2019 0/0:57,0:57:99:0,159,1912 0/1:23,39:62:99:1115,0,606 0/1:25,26:51:99:757,0,726 0/0:54,0:54:99:0,147,1791 0/1:30,26:56:99:784,0,885 0/1:31,19:50:99:524,0,849 0/0:51,0:51:99:0,141,1718 15 91354505 . C T 17220.19 . AC=17;AF=0.202;AN=84;BaseQRankSum=-0.149;DP=3254;Dels=0.00;FS=12.358;HRun=1;HaplotypeScore=1.1560;InbreedingCoeff=0.0413;MQ=59.41;MQ0=0;MQRankSum=1.010;QD=16.11;ReadPosRankSum=-0.321 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,153,1820 0/0:55,0:55:99:0,159,1883 0/1:23,18:41:99:524,0,667 0/0:149,0:149:99:0,421,5106 0/0:140,0:140:99:0,376,4742 0/0:118,2:120:99:0,280,3952 0/0:110,0:110:99:0,310,3871 0/0:111,0:111:99:0,304,3752 1/1:0,46:46:99:1626,135,0 0/1:22,16:38:99:455,0,653 1/1:0,53:53:99:1869,156,0 0/0:41,0:41:99:0,117,1340 0/0:39,1:40:83.88:0,84,1285 0/0:39,0:39:99:0,108,1273 0/1:108,107:215:99:2992,0,2941 0/1:28,31:59:99:918,0,818 0/0:58,0:58:99:0,162,1915 0/0:56,0:57:99:0,153,1799 0/1:46,38:84:99:1022,0,1194 0/1:57,48:105:99:1316,0,1600 0/0:105,0:105:99:0,277,3301 0/0:59,0:60:99:0,177,1992 0/0:180,0:181:99:0,500,6302 0/0:110,0:110:99:0,310,3864 0/0:119,0:119:99:0,334,4129 0/0:102,0:102:99:0,283,3546 0/0:38,0:38:99:0,108,1257 0/1:16,32:48:99:1012,0,403 0/0:42,0:42:99:0,123,1464 0/1:29,37:66:99:1077,0,793 0/1:29,31:60:99:941,0,767 0/0:121,0:121:99:0,310,3633 0/0:68,0:69:99:0,193,2213 0/0:60,0:60:99:0,171,2000 0/0:54,1:55:99:0,117,1741 0/0:45,0:45:99:0,123,1458 0/1:42,45:88:99:1250,0,1114 0/1:29,27:56:99:741,0,782 0/0:48,0:48:99:0,138,1620 0/1:38,26:64:99:765,0,973 0/1:20,25:45:99:713,0,540 0/0:54,2:56:95.39:0,95,1874 15 91354521 . G A 5357.11 . AC=6;AF=0.071;AN=84;BaseQRankSum=3.186;DP=3131;Dels=0.00;FS=14.463;HRun=0;HaplotypeScore=1.5938;InbreedingCoeff=-0.0769;MQ=59.43;MQ0=0;MQRankSum=-1.522;QD=13.46;ReadPosRankSum=1.068 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,159,1792 0/0:57,0:57:99:0,165,1879 0/0:35,0:35:99:0,99,1134 0/0:130,0:130:99:0,388,4807 0/0:134,0:134:99:0,382,4898 0/0:112,0:112:99:0,322,4046 0/0:100,0:100:99:0,280,3570 0/0:103,0:103:99:0,304,3826 0/0:46,0:46:99:0,132,1524 0/0:48,0:48:99:0,144,1588 0/0:50,0:50:99:0,144,1655 0/0:40,0:40:99:0,117,1304 0/0:40,0:40:99:0,117,1341 0/0:37,0:37:99:0,111,1280 0/0:226,0:226:99:0,620,7076 0/0:60,0:60:99:0,165,1866 0/0:58,0:58:99:0,162,1882 0/0:60,0:60:99:0,171,1939 0/0:83,0:83:99:0,229,2661 0/0:101,0:101:99:0,277,3228 0/1:40,57:97:99:1574,0,1001 0/0:58,0:58:99:0,165,1874 0/0:163,0:163:99:0,469,5944 0/0:105,0:105:99:0,304,3845 0/0:111,0:111:99:0,316,4008 0/0:94,0:94:99:0,277,3505 0/1:17,20:37:99:617,0,424 0/1:33,15:48:99:380,0,940 0/0:41,0:41:99:0,120,1351 0/0:69,0:69:99:0,196,2244 0/0:60,0:60:99:0,177,2006 0/1:55,50:105:99:1325,0,1494 0/0:58,0:58:99:0,168,1934 0/0:48,0:48:99:0,141,1618 0/0:44,0:45:99:0,129,1504 0/0:49,0:49:99:0,144,1628 0/0:81,0:81:99:0,229,2649 0/0:57,0:57:99:0,162,1865 0/0:53,1:54:99:0,156,1777 0/0:63,0:63:99:0,180,2068 0/1:28,22:50:99:615,0,759 0/1:33,28:61:99:847,0,924 15 91419098 . C T 155.52 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.612;DP=356;Dels=0.00;FS=5.010;HRun=0;HaplotypeScore=0.4319;InbreedingCoeff=-0.0572;MQ=58.51;MQ0=0;MQRankSum=1.105;QD=6.76;ReadPosRankSum=-1.479 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,34 0/0:9,0:9:24.07:0,24,276 0/0:9,0:9:27.07:0,27,309 0/0:18,0:18:48.15:0,48,624 0/0:8,0:8:21.06:0,21,275 0/0:4,0:4:9.03:0,9,121 0/0:7,0:7:18.06:0,18,233 0/0:3,0:3:9.03:0,9,108 0/0:8,0:8:21.06:0,21,259 0/0:8,0:8:18.04:0,18,219 0/0:6,0:6:18.05:0,18,218 0/0:4,1:5:12.03:0,12,136 0/0:7,0:7:18.05:0,18,204 0/0:5,0:5:15.05:0,15,182 0/0:26,0:26:63.17:0,63,780 0/0:9,0:9:24.07:0,24,294 0/0:13,0:13:39.11:0,39,457 0/0:3,0:3:9.02:0,9,96 0/0:13,0:13:33.08:0,33,374 0/0:9,0:9:21.06:0,21,257 0/1:3,4:7:89.54:98,0,90 0/1:5,4:9:99:115,0,116 0/0:15,0:15:36.11:0,36,469 0/0:7,0:7:18.06:0,18,248 0/0:3,0:3:6.02:0,6,84 0/0:3,0:3:9.03:0,9,124 0/0:6,0:6:18.05:0,18,212 0/0:3,0:3:6.02:0,6,83 0/0:8,0:8:18.05:0,18,228 0/0:6,0:6:15.05:0,15,189 0/0:6,0:6:18.02:0,18,195 0/0:16,0:16:42.12:0,42,504 0/0:6,0:6:18.05:0,18,217 0/0:7,0:7:15.04:0,15,172 0/1:6,1:7:15.07:15,0,195 0/0:4,0:4:12.03:0,12,133 0/0:16,0:16:45.14:0,45,560 0/0:11,0:11:27.08:0,27,325 0/0:11,0:11:24.07:0,24,307 0/0:11,0:11:24.07:0,24,280 0/0:17,0:17:48.14:0,48,558 0/0:6,0:6:18.05:0,18,207 15 91419704 . GAACAGCA G 569.89 . 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A G 647.25 . AC=18;AF=0.214;AN=84;BaseQRankSum=-11.963;DP=1481;Dels=0.02;FS=732.724;HRun=2;HaplotypeScore=6.4116;InbreedingCoeff=-0.2891;MQ=57.97;MQ0=0;MQRankSum=-0.644;QD=1.11;ReadPosRankSum=-11.503 GT:AD:DP:GQ:PL 0/1:14,13:27:18.04:18,0,409 0/1:19,14:33:9.45:9,0,574 0/1:15,11:26:99:135,0,392 0/1:33,32:66:21.57:22,0,940 0/0:43,36:79:2.68:1,0,1288 0/1:26,24:50:67.30:67,0,771 0/0:20,18:38:33.47:0,33,613 0/0:21,17:38:3.63:0,4,624 0/0:27,4:31:72.22:0,72,862 0/1:13,13:27:34.31:34,0,317 0/0:17,15:32:51.15:0,51,608 0/0:13,9:22:9.49:0,9,392 0/1:14,9:23:47.08:47,0,354 0/1:16,10:26:16.80:17,0,454 0/0:72,43:115:99:0,108,2170 0/0:17,9:26:48.13:0,48,559 0/0:16,10:26:42.99:0,43,497 0/0:12,11:23:36.10:0,36,408 0/1:28,10:38:40.85:41,0,821 0/0:32,14:46:52.19:0,52,913 0/1:23,17:40:60.26:60,0,661 0/0:15,7:22:39.12:0,39,462 0/0:43,14:57:95.68:0,96,1411 0/0:15,22:37:43.01:0,43,504 0/1:22,22:44:39.07:39,0,659 0/0:27,18:45:5.48:0,5,774 0/0:15,4:19:45.12:0,45,529 0/0:16,15:31:12.89:0,13,497 0/1:10,7:19:1.46:1,0,295 0/1:12,11:23:54.54:55,0,298 0/1:9,9:18:80.22:80,0,276 0/0:18,10:28:48.13:0,48,554 0/0:15,14:29:38.98:0,39,428 0/1:11,9:20:17.19:17,0,334 0/0:12,7:19:7.47:0,7,344 0/1:12,16:28:50.49:50,0,349 0/1:27,17:44:37.27:37,0,778 0/0:17,15:32:24.47:0,24,537 0/0:17,13:30:12.61:0,13,436 0/1:15,14:29:75.12:75,0,469 0/0:14,8:22:39.10:0,39,450 0/0:14,7:21:36.11:0,36,423 15 91420186 . C T 1615.30 . AC=1;AF=0.012;AN=84;BaseQRankSum=-9.036;DP=4403;DS;Dels=0.00;FS=7.296;HRun=0;HaplotypeScore=3.1395;InbreedingCoeff=-0.0120;MQ=59.41;MQ0=0;MQRankSum=-0.216;QD=11.88;ReadPosRankSum=-0.050 GT:AD:DP:GQ:PL 0/0:80,0:81:99:0,205,2531 0/0:101,0:102:99:0,283,3464 0/0:61,0:61:99:0,165,2010 0/0:224,1:227:99:0,593,7963 0/0:182,0:183:99:0,512,6614 0/0:139,0:139:99:0,385,4985 0/1:73,63:136:99:1662,0,2147 0/0:157,0:157:99:0,436,5639 0/0:81,0:82:99:0,226,2767 0/0:74,0:74:99:0,187,2341 0/0:73,0:73:99:0,205,2533 0/0:81,0:83:99:0,232,2806 0/0:50,0:50:99:0,135,1679 0/0:87,0:87:99:0,241,2958 0/0:247,1:250:99:0,587,7725 0/0:72,0:72:99:0,208,2565 0/0:92,0:92:99:0,253,3089 0/0:70,0:71:99:0,196,2332 0/0:127,0:127:99:0,325,3990 0/0:131,0:133:99:0,337,4175 0/0:112,0:115:99:0,286,3555 0/0:85,1:86:99:0,210,2841 0/0:230,0:230:99:0,632,8225 0/0:105,2:107:99:0,244,3701 0/0:157,0:157:99:0,406,5286 0/0:104,0:104:99:0,277,3588 0/0:68,0:69:99:0,178,2233 0/0:87,0:87:99:0,253,3063 0/0:78,0:78:99:0,217,2622 0/0:67,0:67:99:0,187,2296 0/0:62,0:63:99:0,171,2091 0/0:119,1:120:99:0,316,3936 0/0:93,0:93:99:0,244,3075 0/0:77,0:78:99:0,226,2697 0/0:68,0:70:99:0,196,2368 0/0:82,0:83:99:0,220,2712 0/0:116,0:118:99:0,319,3871 0/0:86,0:86:99:0,244,2972 0/0:74,0:75:99:0,214,2654 0/0:82,0:83:99:0,232,2863 0/0:77,0:78:99:0,205,2515 0/0:76,0:76:99:0,208,2548 15 91449605 . T G 127.14 . AC=4;AF=0.048;AN=84;BaseQRankSum=-20.435;DP=1556;Dels=0.00;FS=124.754;HRun=3;HaplotypeScore=1.0109;InbreedingCoeff=-0.0893;MQ=58.65;MQ0=0;MQRankSum=4.127;QD=0.79;ReadPosRankSum=-8.523 GT:AD:DP:GQ:PL 0/1:15,13:28:16.93:17,0,445 0/0:25,9:34:2.19:0,2,757 0/0:21,7:28:41.39:0,41,620 0/0:48,22:70:84.88:0,85,1442 0/0:29,26:57:33.78:0,34,803 0/0:39,16:57:72.44:0,72,1001 0/0:36,18:54:16.77:0,17,1000 0/0:27,13:40:50.50:0,50,802 0/0:17,11:28:48.10:0,48,527 0/0:16,5:21:45.12:0,45,512 0/0:17,5:22:42.12:0,42,494 0/0:13,10:23:36.07:0,36,395 0/0:10,12:22:7.38:0,7,288 0/0:20,5:25:14.83:0,15,610 0/0:67,33:101:89.70:0,90,2080 0/0:22,13:36:28.55:0,29,587 0/0:15,6:21:21.43:0,21,459 0/0:23,5:28:68.99:0,69,708 0/1:25,14:39:32.77:33,0,720 0/0:52,12:64:99:0,119,1543 0/1:29,22:51:99:143,0,713 0/0:19,10:29:35.44:0,35,595 0/0:50,20:70:61.42:0,61,1471 0/0:29,10:39:75.15:0,75,829 0/0:36,13:51:57.90:0,58,962 0/0:21,10:31:27.62:0,28,602 0/0:18,10:28:25.40:0,25,464 0/0:19,7:27:33.46:0,33,623 0/0:9,7:16:0.90:6,0,219 0/0:14,12:26:39.12:0,39,458 0/0:24,9:33:44.46:0,44,696 0/0:39,9:49:99:0,111,1261 0/0:26,8:34:4.59:0,5,664 0/0:19,6:25:57.12:0,57,632 0/0:21,8:29:25.80:0,26,608 0/0:22,10:33:0.99:6,0,599 0/1:26,17:43:15.42:15,0,737 0/0:24,13:37:1.16:0,1,717 0/0:24,5:29:20.94:0,21,710 0/0:18,8:26:16.56:0,17,493 0/0:15,8:23:42.11:0,42,463 0/0:22,7:29:63.17:0,63,733 15 91449654 . T C 319.62 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.090;DP=2191;Dels=0.00;FS=4.008;HRun=0;HaplotypeScore=1.4676;InbreedingCoeff=-0.0120;MQ=59.07;MQ0=0;MQRankSum=1.654;QD=8.20;ReadPosRankSum=0.525 GT:AD:DP:GQ:PL 0/0:33,0:33:99:0,99,1171 0/0:54,0:54:99:0,153,1838 0/0:37,0:37:96.28:0,96,1138 0/0:89,0:89:99:0,268,3097 0/0:91,0:91:99:0,259,3085 0/0:73,0:73:99:0,202,2427 0/0:66,0:66:99:0,190,2241 0/0:65,0:65:99:0,184,2206 0/0:50,0:50:99:0,141,1625 0/0:27,0:28:72.20:0,72,840 0/0:32,0:32:87.25:0,87,1041 0/0:27,0:27:81.24:0,81,964 0/0:33,0:33:96.28:0,96,1118 0/0:37,0:38:99:0,108,1287 0/0:130,0:130:99:0,358,4222 0/0:38,0:38:99:0,108,1280 0/0:33,0:33:96.28:0,96,1128 0/0:36,0:36:99:0,105,1240 0/0:70,0:71:99:0,193,2309 0/0:66,0:66:99:0,187,2248 0/0:66,0:67:99:0,190,2272 0/1:24,15:39:99:366,0,628 0/0:102,0:102:99:0,295,3522 0/0:60,0:60:99:0,162,1992 0/0:86,0:86:99:0,247,2878 0/0:55,0:55:99:0,156,1873 0/0:34,0:34:96.26:0,96,1131 0/0:46,0:46:99:0,126,1515 0/0:27,0:27:75.22:0,75,899 0/0:34,0:34:93.28:0,93,1130 0/0:38,1:39:99:0,108,1268 0/0:65,0:66:99:0,175,2106 0/0:52,0:52:99:0,141,1636 0/0:41,0:41:99:0,117,1380 0/0:42,0:42:99:0,108,1318 0/0:44,0:44:99:0,120,1435 0/0:67,0:67:99:0,178,2099 0/0:43,0:43:99:0,117,1392 0/0:42,0:42:99:0,117,1408 0/0:47,0:47:99:0,132,1575 0/0:29,0:29:87.25:0,87,1013 0/0:39,0:39:99:0,111,1290 15 91449702 . A T 598.73 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.480;DP=3567;Dels=0.00;FS=0.747;HRun=0;HaplotypeScore=1.3754;InbreedingCoeff=-0.0120;MQ=58.81;MQ0=0;MQRankSum=1.837;QD=10.89;ReadPosRankSum=0.691 GT:AD:DP:GQ:PL 0/0:63,0:63:99:0,172,2088 0/0:70,0:70:99:0,193,2327 0/0:52,0:53:99:0,144,1734 0/0:180,0:180:99:0,491,6003 0/0:192,0:192:99:0,503,6296 0/0:114,0:115:99:0,328,4070 0/0:104,0:104:99:0,277,3488 0/0:117,0:117:99:0,295,3709 0/0:77,0:77:99:0,205,2485 0/0:52,0:52:99:0,135,1634 0/0:71,0:71:99:0,187,2300 0/0:49,0:49:99:0,135,1600 0/0:57,0:57:99:0,159,1882 0/0:65,0:66:99:0,187,2246 0/0:215,0:215:99:0,539,6557 0/0:66,0:66:99:0,190,2245 0/0:44,0:45:99:0,117,1431 0/0:68,0:68:99:0,184,2233 0/0:97,0:97:99:0,265,3172 0/0:104,0:104:99:0,268,3293 0/0:94,0:94:99:0,241,2956 0/1:29,26:55:99:645,0,864 0/0:160,0:161:99:0,451,5548 0/0:100,0:100:99:0,259,3224 0/0:130,0:130:99:0,334,4143 0/0:95,0:95:99:0,253,3148 0/0:56,0:56:99:0,153,1866 0/0:72,0:72:99:0,199,2349 0/0:54,0:54:99:0,153,1841 0/0:71,0:71:99:0,178,2198 0/0:48,0:49:99:0,138,1669 0/0:101,0:101:99:0,262,3226 0/0:62,0:62:99:0,172,2070 0/0:49,0:49:99:0,126,1558 0/0:65,0:65:99:0,184,2209 0/0:70,0:70:99:0,181,2245 0/0:102,0:104:99:0,256,3166 0/0:51,0:52:99:0,141,1657 0/0:67,0:67:99:0,184,2218 0/0:72,0:72:99:0,199,2403 0/0:47,0:47:99:0,135,1609 0/0:80,0:80:99:0,223,2675 15 91454702 . G A 2079.11 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.833;DP=3235;DS;Dels=0.00;FS=4.458;HRun=0;HaplotypeScore=2.2010;InbreedingCoeff=-0.0244;MQ=59.36;MQ0=0;MQRankSum=0.221;QD=12.16;ReadPosRankSum=-1.811 GT:AD:DP:GQ:PL 0/0:61,0:61:99:0,178,2181 0/0:57,0:57:99:0,165,1996 0/0:61,0:61:99:0,178,2167 0/0:127,0:127:99:0,370,4739 0/0:110,0:110:99:0,319,4119 0/1:50,35:85:99:1018,0,1598 0/0:79,0:79:99:0,211,2749 0/1:47,38:86:99:1123,0,1392 0/0:49,0:49:99:0,141,1721 0/0:54,0:54:99:0,150,1844 0/0:77,0:77:99:0,214,2657 0/0:62,0:62:99:0,180,2200 0/0:53,0:53:99:0,153,1879 0/0:64,0:64:99:0,181,2210 0/0:212,0:212:99:0,566,6888 0/0:81,0:81:99:0,238,2888 0/0:60,0:60:99:0,169,2097 0/0:39,0:39:99:0,114,1387 0/0:104,0:104:99:0,280,3357 0/0:108,0:108:99:0,283,3499 0/0:89,1:90:99:0,232,2827 0/0:66,1:67:99:0,193,2350 0/0:130,0:130:99:0,376,4909 0/0:74,0:74:99:0,193,2554 0/0:85,0:85:99:0,235,3065 0/0:67,0:67:99:0,174,2243 0/0:57,0:57:99:0,163,2038 0/0:70,0:70:99:0,199,2407 0/0:57,0:57:99:0,159,1927 0/0:63,0:63:99:0,184,2227 0/0:59,0:59:99:0,168,2014 0/0:99,0:99:99:0,268,3337 0/0:72,0:72:99:0,193,2377 0/0:77,0:78:99:0,208,2544 0/0:69,0:69:99:0,193,2409 0/0:75,0:75:99:0,208,2574 0/0:101,0:101:99:0,274,3353 0/0:60,0:60:99:0,172,2132 0/0:60,0:60:99:0,162,2043 0/0:52,0:52:99:0,147,1781 0/0:62,0:62:99:0,166,2055 0/0:59,0:59:99:0,172,2095 15 91461545 . G A 2897.78 . AC=3;AF=0.036;AN=84;BaseQRankSum=-2.073;DP=3658;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.5180;InbreedingCoeff=-0.0370;MQ=59.43;MQ0=0;MQRankSum=1.369;QD=12.94;ReadPosRankSum=-0.452 GT:AD:DP:GQ:PL 0/0:78,0:78:99:0,226,2660 0/0:78,0:78:99:0,226,2595 0/0:71,0:71:99:0,195,2268 0/0:154,0:154:99:0,442,5515 0/0:137,0:137:99:0,385,4873 0/0:101,0:101:99:0,277,3470 0/0:85,0:85:99:0,235,2991 0/0:87,0:87:99:0,232,2917 0/0:74,0:74:99:0,202,2383 0/0:78,0:78:99:0,217,2481 0/0:72,0:72:99:0,193,2292 0/0:67,0:69:99:0,199,2318 0/0:54,0:54:99:0,150,1699 0/0:68,0:68:99:0,186,2154 0/0:227,0:227:99:0,599,7018 0/0:72,0:72:99:0,208,2426 0/0:81,0:81:99:0,229,2652 0/0:58,0:58:99:0,165,1951 0/0:104,0:104:99:0,307,3491 0/0:125,0:126:99:0,322,3762 0/0:98,0:99:99:0,286,3234 0/0:68,0:68:99:0,184,2171 0/0:166,0:166:99:0,457,5791 0/0:82,0:83:99:0,226,2823 0/0:82,0:82:99:0,241,3016 0/0:69,0:69:99:0,187,2333 0/1:41,31:72:99:855,0,1191 0/1:43,38:81:99:1054,0,1140 0/0:57,0:57:99:0,162,1856 0/0:62,0:62:99:0,177,2108 0/0:67,0:67:99:0,186,2171 0/0:103,1:104:99:0,251,3280 0/0:90,0:90:99:0,244,2854 0/0:64,0:65:99:0,181,2088 0/0:85,2:88:99:0,173,2609 0/0:78,0:79:99:0,220,2553 0/0:101,0:101:99:0,274,3234 0/1:33,38:71:99:1064,0,801 0/0:71,0:71:99:0,195,2207 0/0:76,0:77:99:0,217,2397 0/0:65,0:65:99:0,184,2145 0/0:67,0:67:99:0,199,2250 15 91486305 . C T 839.62 . 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T A 7929.99 . 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G A 15023.13 . 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C T 23135.56 . 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G A 54006.44 . 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C A 1010.71 . 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A AG 372.70 . 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A G 238.52 . 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A G 2135.48 . 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C T 8471.53 . 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C T 2260.80 . 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C T 3150.59 . 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G A 2083 . 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G A 1499.43 . AC=10;AF=0.119;AN=84;BaseQRankSum=-0.674;DP=488;Dels=0.00;FS=15.979;HRun=0;HaplotypeScore=0.2865;InbreedingCoeff=-0.1409;MQ=59.44;MQ0=0;MQRankSum=0.633;QD=11.62;ReadPosRankSum=0.476 GT:AD:DP:GQ:PL 0/0:9,0:9:27.07:0,27,305 0/1:5,3:8:65.84:66,0,111 0/0:6,0:6:15.05:0,15,191 0/0:15,0:15:42.13:0,42,545 0/0:10,0:10:21.07:0,21,288 0/0:18,0:18:42.14:0,42,564 0/0:16,0:16:42.12:0,42,538 0/0:6,0:6:15.05:0,15,205 0/0:7,0:7:18.06:0,18,224 0/0:11,0:11:30.08:0,30,340 0/0:7,0:7:21.06:0,21,244 0/0:13,0:13:36.11:0,36,430 0/0:9,0:9:27.08:0,27,318 0/0:13,0:13:39.11:0,39,451 0/0:39,0:39:99:0,99,1197 0/0:7,0:7:18.05:0,18,214 0/0:13,0:13:36.08:0,36,417 0/0:8,0:8:24.07:0,24,281 0/1:15,5:20:99:132,0,380 0/1:11,11:22:99:265,0,300 0/0:14,0:14:30.10:0,30,387 0/1:4,10:14:74.70:272,0,75 0/0:15,0:15:36.12:0,36,491 0/0:10,0:10:24.08:0,24,323 0/0:8,0:8:24.08:0,24,316 0/1:9,4:13:88.19:88,0,213 0/0:12,0:12:30.09:0,30,368 0/0:11,0:11:33.10:0,33,391 0/0:7,0:7:21.05:0,21,233 0/1:4,5:9:99:155,0,112 0/0:9,0:9:27.07:0,27,299 0/1:4,6:10:82.82:148,0,83 0/1:5,9:14:99:277,0,141 0/0:5,0:5:9.03:0,9,114 0/0:18,0:18:48.14:0,48,588 0/0:11,0:11:24.08:0,24,309 0/1:4,4:9:99:118,0,114 0/0:3,0:3:9.03:0,9,106 0/1:6,4:10:99:112,0,186 0/0:10,0:10:27.08:0,27,338 0/0:9,0:9:24.08:0,24,304 0/0:10,0:10:27.08:0,27,330 15 99762041 . C T 1936.75 . AC=3;AF=0.036;AN=84;BaseQRankSum=0.853;DP=1960;Dels=0.00;FS=0.897;HRun=0;HaplotypeScore=0.9885;InbreedingCoeff=-0.0370;MQ=59.44;MQ0=0;MQRankSum=0.396;QD=14.90;ReadPosRankSum=0.130 GT:AD:DP:GQ:PL 0/0:32,0:32:90.25:0,90,1052 0/0:39,0:39:99:0,102,1202 0/0:27,0:27:75.21:0,75,879 0/0:87,0:87:99:0,238,3022 0/0:70,0:70:99:0,190,2454 0/0:61,0:61:99:0,165,2111 0/0:57,0:57:99:0,150,1937 0/0:55,0:55:99:0,141,1798 0/0:32,0:32:90.24:0,90,1029 0/0:29,0:29:75.20:0,75,881 0/0:42,0:42:99:0,114,1299 0/0:30,0:31:84.22:0,84,950 0/0:28,0:28:78.19:0,78,889 0/0:30,0:30:81.23:0,81,946 0/0:128,0:129:99:0,346,4046 0/0:30,0:30:84.21:0,84,947 0/0:45,0:45:99:0,123,1409 0/0:29,1:31:87.23:0,87,989 0/0:64,0:64:99:0,162,1946 0/0:54,0:54:99:0,150,1727 0/0:46,0:46:99:0,135,1569 0/0:37,0:37:96.28:0,96,1151 0/0:95,1:96:99:0,256,3247 0/0:73,0:74:99:0,193,2460 0/0:72,0:72:99:0,187,2370 0/0:50,0:50:99:0,135,1675 0/0:28,0:28:75.21:0,75,874 0/0:34,0:34:93.26:0,93,1086 0/0:33,0:33:90.24:0,90,1026 0/0:39,0:39:99:0,114,1307 0/0:35,2:37:54.49:0,54,1042 0/0:42,0:42:99:0,126,1415 0/1:18,25:43:99:753,0,415 0/0:35,0:35:99:0,102,1167 0/0:40,0:40:99:0,114,1313 0/0:42,0:42:99:0,123,1399 0/1:18,23:41:99:582,0,441 0/1:22,24:46:99:677,0,497 0/0:35,0:35:96.26:0,96,1105 0/0:45,0:45:99:0,120,1429 0/0:32,0:32:84.23:0,84,990 0/0:40,0:40:99:0,108,1292 15 99762052 . A G 1690.35 . AC=4;AF=0.048;AN=84;BaseQRankSum=-5.076;DP=1918;Dels=0.00;FS=3.529;HRun=0;HaplotypeScore=0.8794;InbreedingCoeff=-0.0500;MQ=59.43;MQ0=0;MQRankSum=-0.530;QD=12.81;ReadPosRankSum=-1.424 GT:AD:DP:GQ:PL 0/0:33,0:33:87.26:0,87,1063 0/0:41,0:41:99:0,108,1340 0/0:24,0:25:69.20:0,69,823 0/0:91,0:91:99:0,232,2898 0/0:71,2:73:99:0,151,2360 0/0:58,0:58:99:0,163,2050 0/0:52,0:52:99:0,144,1800 0/0:58,0:58:99:0,144,1823 0/0:33,0:33:99:0,99,1190 0/0:30,0:30:75.23:0,75,927 0/0:47,0:47:99:0,126,1540 0/0:29,0:29:84.25:0,84,1007 0/1:16,11:27:99:290,0,452 0/0:31,0:31:87.27:0,87,1055 0/0:136,0:136:99:0,361,4389 0/1:12,14:26:99:390,0,364 0/0:44,0:44:99:0,120,1453 0/0:32,0:32:96.29:0,96,1156 0/0:61,0:61:99:0,159,1979 0/0:50,0:50:99:0,144,1744 0/0:49,0:49:99:0,138,1697 0/0:31,0:31:87.26:0,87,1039 0/0:92,0:92:99:0,259,3156 0/0:71,0:71:99:0,187,2351 0/0:70,0:70:99:0,187,2310 0/0:48,0:48:99:0,126,1556 0/0:26,0:26:75.23:0,75,900 0/0:33,0:33:87.26:0,87,1061 0/0:25,0:25:72.22:0,72,881 0/1:16,25:41:99:680,0,456 0/0:32,0:32:87.27:0,87,1075 0/0:37,0:37:99:0,105,1283 0/1:21,17:38:99:418,0,645 0/0:38,0:38:99:0,111,1358 0/0:41,0:41:99:0,117,1415 0/0:40,0:40:99:0,117,1408 0/0:39,0:39:99:0,108,1311 0/0:46,0:46:99:0,123,1514 0/0:35,0:35:96.29:0,96,1173 0/0:45,0:45:99:0,126,1547 0/0:30,0:30:90.28:0,90,1082 0/0:34,0:34:93.29:0,93,1151 15 100211780 . A G 15.40 . AC=1;AF=0.012;AN=84;BaseQRankSum=5.746;DP=1120;Dels=0.00;FS=101.421;HRun=0;HaplotypeScore=0.3283;InbreedingCoeff=-0.0141;MQ=59.14;MQ0=0;MQRankSum=-6.949;QD=0.81;ReadPosRankSum=-0.711 GT:AD:DP:GQ:PL 0/0:19,0:19:54.16:0,54,649 0/0:14,0:14:42.13:0,42,500 0/0:20,1:21:26.74:0,27,644 0/0:33,0:33:96.29:0,96,1143 0/0:37,0:37:99:0,111,1299 0/0:43,2:45:84.64:0,85,1502 0/0:32,2:34:19.29:0,19,1067 0/0:27,0:27:75.23:0,75,904 0/0:21,1:22:26.21:0,26,665 0/0:22,0:22:66.17:0,66,760 0/0:25,0:25:75.22:0,75,886 0/0:24,0:24:72.22:0,72,850 0/0:22,0:22:66.20:0,66,775 0/0:26,0:26:75.21:0,75,884 0/0:51,0:51:99:0,144,1704 0/0:17,0:17:51.15:0,51,602 0/0:20,0:20:57.17:0,57,674 0/0:23,0:23:69.21:0,69,820 0/0:44,0:44:99:0,123,1485 0/0:43,3:46:21.26:0,21,1369 0/0:28,0:28:81.25:0,81,975 0/0:23,0:23:66.20:0,66,783 0/0:38,0:38:99:0,114,1355 0/0:32,0:32:96.30:0,96,1169 0/0:26,1:27:41.23:0,41,895 0/0:31,0:31:84.26:0,84,1019 0/0:17,0:17:45.13:0,45,534 0/0:16,1:17:8.83:0,9,508 0/0:13,0:13:39.11:0,39,453 0/0:22,0:22:66.20:0,66,781 0/0:20,0:20:57.17:0,57,677 0/0:27,0:27:78.23:0,78,942 0/0:23,0:23:69.21:0,69,811 0/0:26,0:26:78.24:0,78,932 0/0:20,1:21:14.85:0,15,585 0/0:22,0:22:57.18:0,57,706 0/0:41,2:43:45.48:0,45,1337 0/0:21,0:21:63.19:0,63,740 0/1:16,3:19:61.46:61,0,503 0/0:30,0:30:81.24:0,81,978 0/0:21,0:21:63.19:0,63,745 0/0:27,0:27:81.25:0,81,965 15 100211794 . C T 67.82 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.623;DP=964;Dels=0.00;FS=114.120;HRun=0;HaplotypeScore=0.4534;InbreedingCoeff=-0.0357;MQ=58.98;MQ0=0;MQRankSum=-7.597;QD=1.70;ReadPosRankSum=3.077 GT:AD:DP:GQ:PL 0/0:19,0:19:54.17:0,54,690 0/0:11,0:11:33.10:0,33,413 0/0:18,1:19:23.74:0,24,639 0/0:26,0:26:72.24:0,72,978 0/0:31,0:31:90.30:0,90,1228 0/0:35,2:37:54.60:0,55,1267 0/0:24,2:26:1.49:4,0,810 0/0:22,0:22:60.20:0,60,818 0/0:15,1:16:12.90:0,13,530 0/0:20,1:21:28.85:0,29,729 0/0:25,0:25:72.23:0,72,915 0/0:19,0:19:57.18:0,57,721 0/0:23,0:23:69.22:0,69,865 0/0:26,0:26:75.23:0,75,950 0/0:44,0:44:99:0,126,1596 0/0:13,0:13:39.13:0,39,497 0/0:16,0:16:48.15:0,48,600 0/0:19,0:19:57.18:0,57,718 0/0:35,0:35:99:0,102,1305 0/0:40,3:43:20.39:0,20,1350 0/0:22,0:23:63.20:0,63,811 0/0:15,0:15:45.14:0,45,575 0/0:34,0:34:99:0,99,1361 0/0:28,0:28:84.28:0,84,1169 0/0:24,1:25:39.12:0,39,958 0/0:22,0:22:66.22:0,66,900 0/0:14,0:14:42.13:0,42,529 0/0:16,1:17:9.01:0,9,505 0/0:7,0:7:21.06:0,21,257 0/0:16,0:16:48.15:0,48,605 0/0:23,0:23:66.21:0,66,840 0/0:22,0:22:63.20:0,63,816 0/0:21,0:21:63.20:0,63,801 0/0:23,0:23:69.22:0,69,877 0/1:15,3:18:52.72:53,0,491 0/0:21,0:22:57.18:0,57,730 0/0:37,2:40:35.23:0,35,1224 0/0:17,0:17:51.16:0,51,643 0/1:18,4:22:76.95:77,0,540 0/0:25,0:25:72.23:0,72,921 0/0:16,0:16:48.15:0,48,611 0/0:23,0:23:66.21:0,66,847 15 100211846 . G A 18.22 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.499;DP=612;Dels=0.00;FS=3.912;HRun=0;HaplotypeScore=0.4119;InbreedingCoeff=-0.0594;MQ=58.64;MQ0=0;MQRankSum=-4.007;QD=0.47;ReadPosRankSum=-2.357 GT:AD:DP:GQ:PL 0/0:17,0:17:45.13:0,45,552 0/0:14,0:14:39.10:0,39,442 0/0:8,1:9:0.48:9,0,230 0/1:7,1:8:14.50:14,0,245 0/0:20,0:21:60.19:0,60,771 0/0:15,1:16:9.89:0,10,499 0/0:10,0:10:27.09:0,27,352 0/0:7,0:7:18.05:0,18,222 0/0:9,0:9:27.07:0,27,307 0/0:19,1:20:17.19:0,17,600 0/0:9,0:9:24.07:0,24,293 0/0:9,0:9:27.08:0,27,308 0/0:19,0:19:48.13:0,48,585 0/0:16,0:16:42.12:0,42,509 0/0:36,0:36:90.21:0,90,1067 0/0:5,0:5:15.04:0,15,178 0/0:7,0:7:21.06:0,21,237 0/0:14,0:14:39.11:0,39,463 0/0:16,0:17:45.12:0,45,523 0/0:26,1:27:32.76:0,33,746 0/0:23,0:23:57.17:0,57,694 0/0:10,0:10:30.07:0,30,346 0/0:16,0:16:42.13:0,42,539 0/0:12,0:12:36.10:0,36,438 0/0:18,0:18:45.15:0,45,603 0/0:15,0:15:36.10:0,36,474 0/0:12,0:12:36.11:0,36,439 0/1:11,2:13:14.70:15,0,304 0/0:12,0:13:30.09:0,30,360 0/0:19,0:19:57.16:0,57,658 0/0:14,0:14:39.11:0,39,467 0/0:11,0:11:33.07:0,33,387 0/0:14,0:15:39.11:0,39,460 0/0:14,1:15:12.49:0,12,418 0/1:15,3:18:57.04:57,0,432 0/0:17,0:17:45.13:0,45,533 0/0:23,1:24:23.20:0,23,672 0/0:10,0:10:30.08:0,30,347 0/0:8,1:9:1.92:3,0,264 0/0:11,0:11:33.09:0,33,371 0/0:12,0:12:33.09:0,33,372 0/0:14,0:14:42.12:0,42,500 15 100345096 . C T 5628.71 . AC=9;AF=0.107;AN=84;BaseQRankSum=-17.849;DP=6150;DS;Dels=0.00;FS=276.467;HRun=1;HaplotypeScore=0.9299;InbreedingCoeff=0.1306;MQ=15.95;MQ0=3323;MQRankSum=5.172;QD=4.62;ReadPosRankSum=-1.913 GT:AD:DP:GQ:PL 0/0:148,0:148:99:0,114,1105 0/0:122,0:122:84.07:0,84,797 0/0:139,0:139:90.14:0,90,924 0/0:208,0:208:99:0,186,1930 0/0:171,0:171:99:0,183,1796 0/0:154,0:154:99:0,111,1155 0/0:136,0:136:99:0,117,1188 0/0:140,0:140:96.13:0,96,963 0/0:110,0:110:60.05:0,60,565 0/0:145,0:145:99:0,111,1091 0/0:88,0:88:45.05:0,45,442 0/0:130,0:130:90.12:0,90,897 0/0:103,0:103:66.06:0,66,616 0/0:126,1:127:96.10:0,96,916 0/0:248,0:250:99:0,285,2829 0/0:80,0:80:33.03:0,33,315 0/0:152,0:152:99:0,114,1073 0/1:63,41:104:99:534,0,390 0/0:236,0:236:99:0,153,1463 0/0:246,0:246:99:0,201,2023 0/1:174,67:242:99:785,0,943 0/1:100,55:155:99:674,0,480 0/0:215,0:215:99:0,183,1836 0/0:141,0:141:99:0,129,1327 0/1:103,52:155:99:819,0,539 0/0:132,0:133:99:0,117,1221 0/0:95,0:95:54.05:0,54,505 0/0:106,0:106:48.05:0,48,465 0/0:115,1:116:84.08:0,84,804 0/0:110,0:110:75.07:0,75,705 0/0:92,0:92:66.07:0,66,635 0/1:143,77:220:99:700,0,695 0/0:139,0:139:90.10:0,90,867 0/0:140,0:141:99:0,108,1015 0/0:131,0:132:99:0,111,1047 0/0:140,0:140:72.07:0,72,694 0/0:248,0:248:99:0,189,1812 0/0:120,0:120:75.08:0,75,713 0/0:118,0:118:99:0,102,955 1/1:34,82:116:99:1275,129,0 0/1:50,46:96:20.72:487,0,21 0/1:92,39:131:99:355,0,389 15 100514614 . T C 62854.49 . AC=57;AF=0.679;AN=84;BaseQRankSum=24.101;DP=3068;Dels=0.00;FS=3.491;HRun=0;HaplotypeScore=2.3232;InbreedingCoeff=-0.0370;MQ=57.66;MQ0=0;MQRankSum=-1.193;QD=23.37;ReadPosRankSum=-1.046 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1660,132,0 0/1:37,30:67:99:796,0,1002 0/1:30,30:60:99:874,0,824 0/0:181,0:182:99:0,448,5604 0/1:58,63:121:99:1952,0,1645 1/1:0,78:78:99:2724,205,0 0/1:50,36:86:99:1087,0,1424 0/1:39,38:79:99:1174,0,990 0/0:70,0:70:99:0,193,2303 0/0:71,0:71:99:0,193,2287 0/0:55,1:56:99:0,107,1706 0/1:17,31:48:99:878,0,440 0/1:29,16:45:99:428,0,760 0/1:33,28:61:99:843,0,874 1/1:0,185:185:99:6113,484,0 1/1:0,59:59:99:1968,153,0 1/1:0,56:56:99:2050,163,0 1/1:0,57:57:99:2027,160,0 0/1:48,31:80:99:855,0,1267 0/1:58,54:112:99:1559,0,1551 1/1:1,79:80:99:2767,191,0 0/1:37,25:62:99:744,0,1022 0/1:80,62:142:99:1650,0,2192 0/1:33,27:60:99:704,0,880 0/1:53,39:92:99:1110,0,1415 0/1:41,32:73:99:997,0,1168 1/1:0,53:53:99:1828,144,0 0/1:27,26:53:99:778,0,717 1/1:0,58:58:99:2004,156,0 1/1:0,64:64:99:2184,175,0 1/1:0,37:37:99:1325,105,0 1/1:1,78:79:99:2582,202,0 1/1:2,59:61:91.72:1862,92,0 0/1:25,36:61:99:1079,0,662 0/1:25,26:51:99:813,0,692 1/1:0,63:63:99:2216,178,0 1/1:0,74:74:99:2474,196,0 1/1:1,67:68:99:2383,158,0 0/1:27,31:58:99:869,0,806 1/1:0,68:68:99:2351,190,0 1/1:1,32:33:56.30:1078,56,0 1/1:0,58:58:99:2068,165,0 15 100594226 . 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G A 24426.59 . AC=30;AF=0.357;AN=84;BaseQRankSum=2.894;DP=2874;Dels=0.00;FS=0.964;HRun=0;HaplotypeScore=1.7389;InbreedingCoeff=-0.1407;MQ=59.10;MQ0=1;MQRankSum=2.202;QD=15.22;ReadPosRankSum=0.426 GT:AD:DP:GQ:PL 0/1:23,32:55:99:866,0,558 0/1:24,25:49:99:695,0,610 0/1:25,9:34:99:205,0,654 0/0:166,1:168:99:0,378,4976 0/1:63,54:118:99:1370,0,1590 0/1:48,56:104:99:1499,0,1260 0/1:36,42:78:99:1146,0,930 0/1:39,50:90:99:1252,0,1005 1/1:0,47:48:99:1512,129,0 0/1:22,21:44:99:552,0,536 0/1:19,13:32:99:369,0,469 0/0:49,0:49:99:0,138,1553 0/0:37,0:38:99:0,99,1096 0/1:15,26:41:99:684,0,413 0/0:166,0:167:99:0,412,4808 0/1:27,25:52:99:682,0,641 0/1:27,17:46:99:456,0,669 0/1:20,21:42:99:521,0,533 0/0:83,0:83:99:0,217,2462 0/0:96,0:96:99:0,244,2783 0/0:90,0:90:99:0,229,2639 0/0:53,1:54:99:0,135,1530 0/1:88,81:171:99:2150,0,2422 0/1:30,33:63:99:833,0,850 0/0:116,0:116:99:0,298,3672 1/1:2,82:85:99:2434,178,0 0/1:18,15:33:99:428,0,469 0/1:25,22:48:99:615,0,581 1/1:0,43:44:99:1303,111,0 0/1:19,22:42:99:640,0,482 1/1:0,52:52:99:1658,135,0 0/0:92,0:94:99:0,238,2745 0/0:47,0:48:99:0,126,1459 0/0:60,1:61:99:0,129,1765 0/1:29,16:45:99:405,0,747 0/0:64,0:64:99:0,168,1919 0/1:50,39:90:99:1045,0,1276 0/1:30,27:57:99:566,0,765 0/0:53,0:53:99:0,147,1639 0/0:43,0:43:99:0,117,1309 0/0:43,2:45:60.18:0,60,1223 0/1:21,20:41:99:539,0,558 15 101598314 . C T 21229.92 . AC=30;AF=0.357;AN=84;BaseQRankSum=20.481;DP=2383;Dels=0.00;FS=2.696;HRun=0;HaplotypeScore=1.4219;InbreedingCoeff=-0.1407;MQ=59.02;MQ0=0;MQRankSum=0.742;QD=16.31;ReadPosRankSum=-0.752 GT:AD:DP:GQ:PL 0/1:26,11:37:99:306,0,708 0/1:26,19:45:99:515,0,648 0/1:20,18:38:99:472,0,536 0/0:103,1:104:99:0,247,3318 0/1:35,42:77:99:1313,0,964 0/1:56,41:97:99:1096,0,1462 0/1:31,34:65:99:1042,0,781 0/1:22,28:50:99:842,0,615 1/1:0,39:39:99:1434,117,0 0/1:19,19:38:99:494,0,453 0/1:13,22:35:99:619,0,277 0/0:39,2:41:66.51:0,67,1157 0/0:36,0:36:99:0,99,1148 0/1:15,26:41:99:769,0,374 0/0:162,0:162:99:0,415,4768 0/1:23,17:40:99:475,0,632 0/1:27,17:44:99:484,0,703 0/1:22,14:36:99:410,0,567 0/0:77,0:78:99:0,208,2317 0/0:94,0:94:99:0,247,2828 0/0:98,0:99:99:0,259,2982 0/0:46,0:46:99:0,132,1498 0/1:47,50:97:99:1469,0,1271 0/1:32,29:61:99:770,0,928 0/0:81,1:82:99:0,179,2515 1/1:2,45:47:94.84:1507,95,0 0/1:16,16:32:99:469,0,390 0/1:17,35:53:99:988,0,375 1/1:0,32:32:81.26:1038,81,0 0/1:23,16:39:99:458,0,639 1/1:0,52:52:99:1796,147,0 0/0:78,0:78:99:0,202,2306 0/0:52,0:52:99:0,141,1601 0/0:44,1:45:83.85:0,84,1241 0/1:23,20:43:99:572,0,600 0/0:52,0:52:99:0,132,1537 0/1:37,41:78:99:1135,0,914 0/1:36,17:53:99:416,0,925 0/0:26,0:26:78.19:0,78,849 0/0:39,0:39:99:0,111,1233 0/0:46,0:47:99:0,129,1461 0/1:20,13:33:99:342,0,521 15 101606889 . G A 97967.24 . AC=38;AF=0.452;AN=84;BaseQRankSum=-18.468;DP=7049;DS;Dels=0.00;FS=3.013;HRun=0;HaplotypeScore=5.1009;InbreedingCoeff=-0.1533;MQ=59.29;MQ0=0;MQRankSum=-2.481;QD=18.64;ReadPosRankSum=-1.528 GT:AD:DP:GQ:PL 0/1:72,64:137:99:1727,0,1845 0/1:72,78:150:99:2239,0,1988 0/1:53,54:107:99:1558,0,1386 0/1:131,96:227:99:2525,0,4006 0/1:114,91:206:99:2615,0,3333 1/1:2,237:239:99:7826,554,0 1/1:0,213:213:99:7449,599,0 0/1:114,93:209:99:2399,0,3240 0/0:149,0:149:99:0,403,4948 0/0:126,0:126:99:0,343,4200 0/1:76,78:154:99:2180,0,2062 1/1:0,123:123:99:4015,328,0 1/1:0,149:149:99:4826,391,0 0/1:74,72:147:99:1968,0,2040 1/1:0,250:250:99:8380,713,0 0/1:55,66:121:99:1848,0,1404 0/1:79,80:159:99:2252,0,2259 0/0:130,0:131:99:0,352,4279 0/1:107,100:207:99:2742,0,2721 0/1:101,119:221:99:3420,0,2521 0/0:201,0:203:99:0,523,6237 0/1:95,91:187:99:2451,0,2533 0/0:250,0:250:99:0,695,8794 0/0:217,1:219:99:0,515,6876 0/1:123,95:218:99:2411,0,3563 0/0:219,2:221:99:0,494,7103 0/1:50,66:116:99:1883,0,1255 0/1:67,86:153:99:2337,0,1925 0/0:98,1:100:99:0,225,3159 0/1:49,57:107:99:1618,0,1352 0/0:121,0:122:99:0,322,3948 0/1:111,110:222:99:2992,0,3136 1/1:0,181:181:99:5758,466,0 0/1:57,65:122:99:1868,0,1527 0/0:124,1:125:99:0,286,3896 0/1:74,78:152:99:2146,0,1887 0/1:98,121:219:99:3418,0,2349 0/1:55,70:125:99:1984,0,1485 1/1:0,144:144:99:4963,409,0 0/1:83,80:163:99:2281,0,2336 0/1:59,67:126:99:1888,0,1631 0/0:147,1:148:99:0,369,4898 15 101606890 . C A 98633.71 . AC=38;AF=0.452;AN=84;BaseQRankSum=35.535;DP=7003;DS;Dels=0.00;FS=11.289;HRun=0;HaplotypeScore=5.1513;InbreedingCoeff=-0.1533;MQ=59.29;MQ0=0;MQRankSum=0.409;QD=18.87;ReadPosRankSum=-2.408 GT:AD:DP:GQ:PL 0/1:73,64:137:99:1769,0,1781 0/1:69,80:150:99:2273,0,1737 0/1:50,57:107:99:1585,0,1186 0/1:133,98:231:99:2647,0,3646 0/1:116,89:205:99:2605,0,3038 1/1:2,232:235:99:7775,548,0 1/1:0,212:212:99:7527,590,0 0/1:114,90:205:99:2464,0,2912 0/0:151,0:151:99:0,400,4548 0/0:125,0:125:99:0,343,3840 0/1:72,77:150:99:2259,0,1857 1/1:0,122:122:99:3943,322,0 1/1:1,147:148:99:4789,382,0 0/1:74,69:143:99:1949,0,1848 1/1:0,248:250:99:8559,707,0 0/1:55,66:121:99:1851,0,1181 0/1:79,79:158:99:2307,0,1929 0/0:125,0:125:99:0,340,3784 0/1:109,101:210:99:2709,0,2498 0/1:101,116:218:99:3378,0,2427 0/0:199,0:200:99:0,511,5647 0/1:95,89:185:99:2488,0,2226 0/0:248,1:250:99:0,674,7918 0/0:214,2:217:99:0,474,6252 0/1:123,94:217:99:2434,0,3237 0/0:215,2:217:99:0,475,6442 0/1:49,66:116:99:1858,0,1100 0/1:69,86:156:99:2371,0,1686 0/0:100,1:101:99:0,247,3065 0/1:51,59:110:99:1651,0,1232 0/0:120,0:121:99:0,319,3616 0/1:106,111:217:99:2996,0,2580 1/1:2,178:180:99:5799,466,0 0/1:55,64:120:99:1880,0,1274 0/0:124,1:125:99:0,292,3687 0/1:72,79:151:99:2240,0,1655 0/1:98,122:221:99:3342,0,2221 0/1:52,68:120:99:1946,0,1244 1/1:0,145:145:99:5129,415,0 0/1:82,80:162:99:2227,0,2103 0/1:60,63:124:99:1884,0,1444 0/0:144,1:145:99:0,358,4336 15 101814816 . C A 300.48 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.125;DP=1446;Dels=0.00;FS=8.213;HRun=0;HaplotypeScore=0.8213;InbreedingCoeff=-0.0244;MQ=59.11;MQ0=0;MQRankSum=0.531;QD=7.15;ReadPosRankSum=-1.536 GT:AD:DP:GQ:PL 0/0:29,0:29:81.24:0,81,1013 0/0:27,0:28:75.23:0,75,950 0/0:27,0:27:66.21:0,66,866 0/0:66,0:66:99:0,172,2270 0/0:37,0:37:99:0,99,1268 0/0:55,0:55:99:0,144,1942 0/0:59,0:59:99:0,144,1963 0/0:45,0:45:99:0,117,1592 0/0:24,0:24:69.21:0,69,866 0/0:16,0:16:45.14:0,45,569 0/0:14,0:14:36.12:0,36,471 0/0:26,0:26:72.23:0,72,921 0/0:21,1:22:48.15:0,48,624 0/0:14,0:14:36.11:0,36,460 0/0:117,0:117:99:0,286,3648 0/0:13,0:13:36.11:0,36,454 0/0:29,0:29:72.23:0,72,938 0/0:25,0:25:66.20:0,66,835 0/0:57,1:58:99:0,144,1768 0/0:52,0:52:99:0,132,1699 0/0:50,0:50:99:0,132,1674 0/0:28,0:28:78.24:0,78,973 0/0:56,0:56:99:0,147,1983 0/0:57,0:57:99:0,138,1875 0/0:46,1:47:99:0,120,1619 0/0:40,0:40:96.31:0,96,1307 0/0:20,0:20:54.17:0,54,698 0/0:23,0:23:66.20:0,66,829 0/0:19,0:19:51.16:0,51,663 0/0:18,1:19:48.15:0,48,620 0/0:22,0:22:57.17:0,57,722 0/0:36,0:36:90.28:0,90,1148 0/0:32,0:32:84.24:0,84,1067 0/0:20,0:20:51.16:0,51,651 0/0:19,0:19:57.18:0,57,719 0/0:26,0:26:72.20:0,72,898 0/0:51,0:52:99:0,123,1538 0/0:33,0:33:90.28:0,90,1137 0/0:22,0:23:57.18:0,57,744 0/1:12,8:20:99:215,0,356 0/0:26,0:26:63.20:0,63,827 0/1:15,7:22:99:148,0,470 15 101872179 . G A 331.19 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.303;DP=1065;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.6188;InbreedingCoeff=-0.0121;MQ=58.90;MQ0=0;MQRankSum=1.075;QD=18.40;ReadPosRankSum=0.334 GT:AD:DP:GQ:PL 0/0:24,0:24:60.19:0,60,762 0/0:25,0:25:72.22:0,72,897 0/0:21,0:21:63.20:0,63,787 0/0:37,0:37:99:0,108,1409 0/0:41,0:41:99:0,117,1538 0/0:25,0:25:75.22:0,75,972 0/0:17,0:17:45.14:0,45,597 0/1:6,12:18:99:377,0,190 0/0:20,0:20:60.19:0,60,756 0/0:24,0:24:66.21:0,66,834 0/0:16,0:16:45.14:0,45,571 0/0:13,0:13:36.11:0,36,439 0/0:22,0:22:60.17:0,60,720 0/0:24,0:24:69.20:0,69,832 0/0:62,0:62:99:0,165,2030 0/0:20,0:20:57.17:0,57,687 0/0:29,0:29:81.26:0,81,1021 0/0:17,0:17:48.15:0,48,604 0/0:43,0:43:99:0,114,1362 0/0:41,0:41:99:0,99,1244 0/0:40,0:40:99:0,111,1359 0/0:23,0:23:66.20:0,66,820 0/0:38,0:38:96.27:0,96,1266 0/0:24,0:24:66.22:0,66,902 0/0:14,0:14:39.13:0,39,523 0/0:19,0:19:51.17:0,51,695 0/0:15,0:15:39.12:0,39,478 0/0:16,0:16:45.14:0,45,548 0/0:19,0:19:48.15:0,48,616 0/0:27,0:27:63.18:0,63,805 0/0:23,0:23:69.20:0,69,853 0/0:43,0:44:99:0,120,1507 0/0:35,0:35:99:0,99,1220 0/0:16,0:16:45.14:0,45,566 0/0:19,0:19:51.16:0,51,647 0/0:22,1:23:27.94:0,28,707 0/0:33,0:33:87.27:0,87,1093 0/0:25,0:25:72.21:0,72,863 0/0:17,0:17:48.12:0,48,577 0/0:18,0:18:51.16:0,51,641 0/0:20,0:20:57.17:0,57,702 0/0:18,0:18:48.14:0,48,587 15 101910550 . G A 3452.50 . AC=26;AF=0.310;AN=84;BaseQRankSum=-9.345;DP=326;Dels=0.00;FS=3.169;HRun=2;HaplotypeScore=0.1716;InbreedingCoeff=-0.1450;MQ=58.49;MQ0=0;MQRankSum=-0.386;QD=15.98;ReadPosRankSum=-0.946 GT:AD:DP:GQ:PL 0/1:4,6:10:99:179,0,120 0/1:4,7:11:99:192,0,117 0/0:9,0:9:18.06:0,18,251 1/1:0,6:6:15.05:193,15,0 0/1:1,2:3:32.73:70,0,33 0/0:5,0:5:15.05:0,15,208 0/1:1,0:1:1.76:0,3,39 0/0:3,0:3:6.02:0,6,72 0/0:5,0:5:15.05:0,15,193 0/1:7,10:17:99:216,0,164 0/0:9,0:9:24.08:0,24,306 0/0:7,0:7:21.07:0,21,272 0/0:11,0:11:27.09:0,27,359 0/1:3,4:7:94.62:121,0,95 0/1:7,10:17:99:244,0,219 1/1:0,6:6:18.06:222,18,0 0/0:8,0:8:21.07:0,21,274 0/1:2,1:3:27.95:28,0,65 0/1:8,6:14:99:125,0,209 0/1:11,10:21:99:285,0,322 0/1:7,9:16:99:196,0,228 0/1:6,6:12:99:187,0,166 1/1:0,3:3:9.03:116,9,0 0/0:3,0:3:6.02:0,6,85 0/0:3,0:3:9.03:0,9,124 0/0:3,0:3:9.03:0,9,123 0/0:3,0:3:6.02:0,6,84 0/1:2,3:5:61.33:94,0,61 0/1:1,5:6:21.26:167,0,21 0/0:6,0:6:15.05:0,15,192 0/0:7,0:7:21.06:0,21,256 0/1:5,7:12:99:201,0,123 0/1:7,10:17:99:223,0,224 0/0:3,0:3:9.03:0,9,110 0/1:3,4:7:64.50:127,0,65 0/1:4,1:5:11.64:12,0,134 0/1:5,6:11:99:165,0,157 0/0:9,0:9:24.08:0,24,307 0/1:3,3:6:89.34:89,0,98 0/0:10,0:10:27.09:0,27,350 0/0:2,0:2:6.02:0,6,75 0/0:4,0:4:12.04:0,12,154 15 101922323 . A G 5803.93 . AC=22;AF=0.262;AN=84;BaseQRankSum=-8.170;DP=926;Dels=0.00;FS=3.048;HRun=0;HaplotypeScore=0.5898;InbreedingCoeff=-0.1095;MQ=58.88;MQ0=0;MQRankSum=1.058;QD=13.28;ReadPosRankSum=-0.886 GT:AD:DP:GQ:PL 0/0:25,0:25:75.19:0,75,867 0/1:9,8:17:99:210,0,234 0/1:7,6:13:99:150,0,175 0/0:20,0:20:57.18:0,57,697 0/0:12,0:12:33.08:0,33,396 0/1:9,9:18:99:240,0,232 0/0:10,0:10:27.09:0,27,341 0/1:8,4:12:93.61:94,0,211 0/0:17,0:17:51.15:0,51,605 0/0:26,0:26:75.19:0,75,866 0/0:15,0:15:42.10:0,42,476 0/1:9,4:13:99:105,0,178 0/1:10,9:19:99:203,0,225 0/1:9,7:16:99:143,0,269 0/0:69,0:69:99:0,190,2211 0/0:22,0:22:60.16:0,60,709 0/0:9,0:9:18.06:0,18,223 0/1:7,6:13:99:124,0,215 0/1:27,23:50:99:484,0,737 0/0:58,0:58:99:0,156,1916 1/1:0,39:39:99:1163,105,0 0/1:16,9:25:99:213,0,448 0/1:18,7:25:99:142,0,513 0/0:13,0:13:39.10:0,39,472 0/0:16,0:16:42.12:0,42,512 0/0:7,0:7:18.05:0,18,209 0/1:12,9:21:99:236,0,366 0/0:21,0:21:63.16:0,63,738 0/1:10,6:16:99:100,0,307 0/1:8,12:20:99:321,0,225 0/1:9,8:17:99:204,0,232 0/1:16,20:36:99:480,0,457 1/1:1,29:30:36.60:772,37,0 0/0:28,0:28:72.19:0,72,874 0/1:12,9:21:99:252,0,308 0/0:12,0:13:36.09:0,36,402 0/0:30,0:30:75.22:0,75,907 0/0:19,0:19:51.14:0,51,607 0/0:20,0:20:54.15:0,54,632 0/0:14,0:14:42.12:0,42,486 0/1:10,6:16:99:169,0,311 0/0:24,0:25:72.20:0,72,835 15 101924504 . C T 279.02 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.064;DP=1278;Dels=0.00;FS=4.140;HRun=1;HaplotypeScore=1.0643;InbreedingCoeff=-0.0121;MQ=58.96;MQ0=0;MQRankSum=-0.182;QD=9.30;ReadPosRankSum=2.583 GT:AD:DP:GQ:PL 0/0:19,0:19:51.16:0,51,656 0/0:10,0:10:30.09:0,30,360 0/0:28,0:28:84.25:0,84,1045 0/0:61,0:61:99:0,150,1979 0/0:48,0:49:99:0,126,1656 0/0:35,0:35:93.29:0,93,1219 0/0:25,0:25:66.19:0,66,851 0/0:37,0:37:96.31:0,96,1274 0/0:33,0:33:84.26:0,84,1074 0/0:16,0:16:42.11:0,42,512 0/0:25,0:25:69.17:0,69,836 0/0:31,0:31:93.29:0,93,1145 0/0:17,0:17:51.15:0,51,606 0/0:14,0:14:42.13:0,42,513 0/0:96,0:96:99:0,250,3109 0/0:19,0:20:57.17:0,57,703 0/0:31,0:31:75.23:0,75,950 0/0:24,0:24:60.18:0,60,758 0/0:40,0:42:99:0,105,1264 0/0:41,0:41:99:0,108,1345 0/0:46,0:46:99:0,129,1579 0/0:28,0:28:75.23:0,75,941 0/0:38,0:38:99:0,99,1294 0/0:25,0:25:72.23:0,72,939 0/0:28,0:28:66.22:0,66,899 0/0:26,0:26:69.22:0,69,924 0/0:16,0:16:42.09:0,42,511 0/0:23,0:23:57.17:0,57,726 0/0:35,0:35:87.27:0,87,1107 0/0:17,0:17:48.12:0,48,593 0/0:25,1:26:69.20:0,69,859 0/0:46,0:46:99:0,120,1513 0/0:36,0:36:90.27:0,90,1140 0/0:17,0:17:45.14:0,45,564 0/0:24,0:24:69.21:0,69,853 0/0:29,0:29:81.25:0,81,1009 0/0:45,0:45:99:0,111,1414 0/1:17,13:30:99:325,0,453 0/0:21,0:21:63.19:0,63,776 0/0:20,0:20:51.13:0,51,616 0/0:22,0:22:63.19:0,63,779 0/0:26,0:26:69.21:0,69,884 15 101924546 . C T 2434.52 . AC=6;AF=0.071;AN=84;BaseQRankSum=-11.559;DP=1248;Dels=0.00;FS=8.905;HRun=2;HaplotypeScore=0.7088;InbreedingCoeff=-0.0770;MQ=58.91;MQ0=0;MQRankSum=2.291;QD=13.38;ReadPosRankSum=0.257 GT:AD:DP:GQ:PL 0/1:13,6:19:99:150,0,416 0/0:13,0:13:36.11:0,36,444 0/0:21,0:21:60.18:0,60,751 0/0:63,0:63:99:0,181,2374 0/0:59,0:59:99:0,178,2367 0/0:30,0:30:90.24:0,90,1156 0/0:21,0:22:63.19:0,63,831 0/1:13,15:29:99:423,0,379 0/0:26,0:26:75.24:0,75,968 0/0:12,0:12:33.10:0,33,415 0/0:21,0:21:63.19:0,63,784 0/1:16,15:31:99:433,0,459 0/1:8,6:14:99:167,0,258 0/0:29,0:29:87.27:0,87,1070 0/1:30,39:70:99:1100,0,883 0/1:10,9:19:99:266,0,310 0/0:32,0:32:90.28:0,90,1131 0/0:20,0:20:57.18:0,57,720 0/0:40,0:40:99:0,111,1415 0/0:46,1:47:91.13:0,91,1517 0/0:58,0:58:99:0,162,2004 0/0:38,1:40:73.97:0,74,1265 0/0:47,0:47:99:0,138,1836 0/0:23,0:23:66.21:0,66,877 0/0:31,0:31:90.29:0,90,1216 0/0:20,0:20:57.19:0,57,755 0/0:11,0:11:27.09:0,27,348 0/0:24,0:24:72.22:0,72,874 0/0:25,0:25:72.23:0,72,914 0/0:29,0:29:78.23:0,78,965 0/0:28,0:28:84.27:0,84,1068 0/0:32,0:32:93.29:0,93,1181 0/0:30,0:30:84.27:0,84,1060 0/0:27,0:27:78.23:0,78,966 0/0:20,0:20:57.17:0,57,707 0/0:31,0:31:84.24:0,84,1058 0/0:41,0:41:99:0,117,1478 0/0:29,1:30:52:0,52,981 0/0:16,0:16:48.15:0,48,605 0/0:27,0:27:81.25:0,81,1007 0/0:19,0:19:57.17:0,57,696 0/0:22,0:22:63.19:0,63,787 15 101924576 . C T 2407.80 . AC=5;AF=0.060;AN=84;BaseQRankSum=1.544;DP=1291;Dels=0.00;FS=10.286;HRun=0;HaplotypeScore=1.1911;InbreedingCoeff=-0.0633;MQ=58.68;MQ0=0;MQRankSum=0.958;QD=14.50;ReadPosRankSum=0.516 GT:AD:DP:GQ:PL 0/0:26,0:26:69.18:0,69,787 0/1:11,4:15:99:103,0,329 0/1:4,14:18:65.97:462,0,66 0/0:49,0:50:99:0,135,1743 0/0:45,0:45:99:0,129,1638 0/0:37,0:37:99:0,102,1287 0/0:15,0:15:45.14:0,45,570 0/0:34,0:34:96.27:0,96,1172 0/0:29,0:29:69.20:0,69,837 0/0:11,0:11:24.07:0,24,295 0/0:19,0:19:57.15:0,57,668 0/0:37,0:37:99:0,105,1212 0/0:14,0:14:39.11:0,39,453 0/0:29,0:29:81.21:0,81,948 0/0:71,0:71:99:0,183,2131 0/0:33,0:34:90.27:0,90,1083 0/0:25,0:25:72.18:0,72,845 0/0:21,0:21:63.13:0,63,713 0/0:39,0:39:99:0,117,1313 0/0:51,0:51:99:0,147,1744 0/1:32,24:56:99:702,0,858 0/1:17,21:38:99:649,0,430 0/0:47,0:48:99:0,126,1619 0/0:23,0:23:60.18:0,60,742 0/0:23,0:23:66.19:0,66,826 0/0:22,0:22:60.17:0,60,725 0/0:14,0:14:39.11:0,39,457 0/0:29,0:29:81.22:0,81,991 0/0:26,0:26:66.17:0,66,775 0/0:33,0:33:87.26:0,87,1053 0/0:30,0:30:81.19:0,81,950 0/0:40,0:40:99:0,108,1282 0/1:20,19:39:99:589,0,550 0/0:23,0:23:66.16:0,66,761 0/0:22,0:22:60.16:0,60,681 0/0:31,0:31:90.25:0,90,1050 0/0:43,0:43:99:0,123,1421 0/0:29,0:29:81.22:0,81,932 0/0:21,0:22:63.18:0,63,737 0/0:29,0:29:87.21:0,87,996 0/0:27,0:27:75.21:0,75,887 0/0:24,0:24:69.17:0,69,781 15 101972303 . C T 230.21 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.636;DP=1427;Dels=0.00;FS=7.170;HRun=3;HaplotypeScore=0.8443;InbreedingCoeff=-0.0244;MQ=59.31;MQ0=0;MQRankSum=-0.074;QD=7.19;ReadPosRankSum=0.678 GT:AD:DP:GQ:PL 0/0:35,0:35:90.28:0,90,1149 0/0:29,0:29:81.26:0,81,1033 0/0:27,0:27:72.23:0,72,930 0/0:36,0:36:99:0,99,1329 0/0:28,0:28:84.27:0,84,1128 0/0:30,0:30:90.30:0,90,1248 0/0:26,0:26:69.22:0,69,947 0/0:19,0:19:51.17:0,51,708 0/0:26,0:26:69.22:0,69,892 0/0:14,0:14:42.13:0,42,527 0/0:27,0:27:72.23:0,72,932 0/0:24,0:24:63.20:0,63,815 0/0:22,0:22:60.19:0,60,756 0/0:37,0:37:93.30:0,93,1209 0/0:97,0:98:99:0,250,3186 0/0:25,0:25:69.22:0,69,893 0/0:45,0:45:99:0,123,1571 0/0:23,0:23:66.21:0,66,842 0/0:70,0:70:99:0,184,2380 0/0:76,0:76:99:0,196,2530 0/0:62,1:63:99:0,162,2087 0/0:39,0:39:99:0,108,1383 0/0:38,0:38:99:0,102,1415 0/1:10,4:14:99:101,0,353 0/0:30,0:30:87.26:0,87,1182 0/1:11,7:18:99:192,0,394 0/0:22,0:22:57.16:0,57,726 0/0:19,0:19:54.16:0,54,672 0/0:25,0:25:72.23:0,72,917 0/0:34,0:34:93.30:0,93,1203 0/0:31,0:31:84.26:0,84,1072 0/0:61,0:62:99:0,153,1982 0/0:41,0:42:99:0,111,1435 0/0:23,0:23:60.19:0,60,776 0/0:24,0:24:72.23:0,72,911 0/0:31,0:31:84.26:0,84,1066 0/0:60,0:60:99:0,156,2020 0/0:23,0:23:63.20:0,63,801 0/0:27,0:27:78.25:0,78,989 0/0:27,0:27:75.24:0,75,956 0/0:27,0:27:75.23:0,75,953 0/0:31,0:31:81.26:0,81,1055 15 102029597 . C G 404.12 . AC=16;AF=0.615;AN=26;BaseQRankSum=0.792;DP=22;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0768;InbreedingCoeff=0.4170;MQ=59.15;MQ0=0;MQRankSum=1.585;QD=28.87;ReadPosRankSum=-2.377 GT:AD:DP:GQ:PL ./. ./. ./. 0/0:1,0:1:3.01:0,3,40 ./. ./. ./. ./. 1/1:0,1:1:3.01:36,3,0 1/1:0,2:2:6.02:74,6,0 ./. ./. ./. 1/1:0,1:1:3.01:39,3,0 0/0:2,0:2:6.02:0,6,72 ./. ./. 0/0:1,0:1:3.01:0,3,37 ./. ./. 1/1:0,2:2:6.02:74,6,0 1/1:0,4:4:12.02:139,12,0 ./. 1/1:0,1:1:3.01:42,3,0 ./. ./. ./. ./. ./. ./. ./. 1/1:0,1:1:3.01:40,3,0 1/1:0,2:2:3.01:36,3,0 ./. ./. ./. 0/0:1,0:1:3.01:0,3,38 0/0:2,0:2:3.01:0,3,44 ./. ./. ./. ./. 15 102029685 . G C 11.36 . AC=2;AF=0.167;AN=12;BaseQRankSum=-1.495;DP=10;Dels=0.00;FS=5.441;HRun=0;HaplotypeScore=0.6664;MQ=55.21;MQ0=0;MQRankSum=-0.922;QD=3.79;ReadPosRankSum=-0.922 GT:AD:DP:GQ:PL ./. ./. ./. 0/0:1,0:1:3.01:0,3,41 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,38 ./. ./. ./. 0/0:1,0:1:3.01:0,3,38 0/1:1,1:2:24.58:25,0,26 ./. 0/0:1,0:1:3.01:0,3,41 ./. ./. 0/1:0,1:1:1.76:30,3,0 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 15 102029685 . G GGC 348.29 . AC=16;AF=1.000;AN=16;DP=8;FS=0.000;HRun=0;HaplotypeScore=2.6980;MQ=53.95;MQ0=0;QD=43.54 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:0,1:1:3.01:54,3,0 ./. ./. ./. ./. ./. ./. ./. ./. 1/1:0,1:1:3.01:54,3,0 ./. ./. ./. 1/1:0,1:1:3.01:55,3,0 ./. ./. ./. 1/1:0,1:1:3.01:55,3,0 1/1:1,0:1:3.01:46,3,0 ./. 1/1:0,1:1:3.01:54,3,0 ./. ./. 1/1:1,0:1:3:25,3,0 ./. ./. ./. ./. ./. 1/1:0,1:1:3.01:54,3,0 ./. ./. ./. ./. ./. ./. ./. ./. ./. 15 102224341 . G A 16967.33 . AC=19;AF=0.226;AN=84;BaseQRankSum=8.666;DP=2255;Dels=0.00;FS=4.766;HRun=0;HaplotypeScore=1.6490;InbreedingCoeff=-0.0202;MQ=59.07;MQ0=0;MQRankSum=1.591;QD=17.49;ReadPosRankSum=1.091 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,117,1312 0/1:14,20:34:99:579,0,306 0/1:20,25:45:99:713,0,511 0/1:53,39:92:99:1040,0,1584 0/1:48,34:82:99:956,0,1477 0/1:32,48:80:99:1522,0,933 0/0:72,0:72:99:0,199,2429 1/1:0,75:75:99:2588,211,0 0/0:47,0:47:99:0,138,1568 0/0:44,0:44:99:0,129,1406 0/0:44,0:44:99:0,126,1451 0/0:44,0:44:99:0,132,1494 0/0:23,0:23:69.19:0,69,803 0/0:30,0:30:87.23:0,87,986 0/0:149,0:149:99:0,409,4714 0/1:16,17:33:99:496,0,412 0/0:50,0:50:99:0,138,1565 0/0:29,0:29:81.23:0,81,929 0/0:52,0:52:99:0,132,1509 0/0:71,0:71:99:0,193,2268 1/1:0,68:69:99:2274,187,0 0/1:20,16:36:99:483,0,517 0/1:50,47:97:99:1361,0,1471 0/0:74,0:74:99:0,205,2509 0/0:72,0:72:99:0,208,2534 0/0:66,0:66:99:0,184,2285 0/0:32,0:32:87.24:0,87,1014 0/0:35,2:37:41.42:0,41,1090 0/0:27,0:27:75.20:0,75,846 0/1:16,24:40:99:719,0,445 0/0:29,0:29:81.23:0,81,942 0/1:26,22:48:99:632,0,744 0/1:20,25:45:99:712,0,514 0/0:46,0:46:99:0,132,1493 0/1:20,28:48:99:790,0,503 0/0:53,0:53:99:0,153,1722 0/0:60,0:60:99:0,159,1800 0/0:47,0:47:99:0,132,1517 0/1:19,20:39:99:541,0,507 0/1:31,30:61:99:863,0,795 0/1:21,25:46:99:701,0,533 0/0:48,0:48:99:0,135,1561 15 102264304 . G C 733.27 . AC=20;AF=0.278;AN=72;BaseQRankSum=0.727;DP=104;Dels=0.00;FS=1.112;HRun=2;HaplotypeScore=0.0914;InbreedingCoeff=0.1674;MQ=56.71;MQ0=0;MQRankSum=-0.125;QD=15.94;ReadPosRankSum=-0.844 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:72,6,0 1/1:0,1:1:3.01:40,3,0 0/0:2,0:2:3.01:0,3,39 0/0:5,0:5:12.03:0,12,141 0/0:1,0:1:3.01:0,3,41 0/1:1,2:3:33.29:37,0,33 0/0:2,0:2:6.02:0,6,70 1/1:0,3:3:9.03:121,9,0 0/0:2,1:3:6.02:0,6,79 0/0:2,0:2:6.02:0,6,78 0/0:1,0:1:3.01:0,3,38 ./. 0/0:1,0:1:3.01:0,3,39 ./. 0/1:1,4:5:17.45:136,0,17 0/1:3,2:5:25.76:26,0,105 0/1:0,1:1:1.76:39,3,0 0/0:2,0:2:3.01:0,3,37 0/0:5,0:5:12.02:0,12,130 0/0:4,0:4:12.04:0,12,151 1/1:0,3:3:6.02:72,6,0 0/0:4,0:4:9.02:0,9,100 0/0:1,1:2:3.01:0,3,31 ./. 0/0:2,0:2:6.02:0,6,75 0/1:5,1:6:23.53:24,0,154 0/0:2,0:2:3.01:0,3,38 0/0:1,0:1:3.01:0,3,34 0/0:2,0:2:6.02:0,6,72 ./. 0/0:3,0:3:9.02:0,9,107 0/0:2,0:2:6.02:0,6,73 0/0:5,0:5:15.03:0,15,165 0/0:1,0:1:3.01:0,3,39 1/1:0,1:1:3.01:39,3,0 0/1:1,3:4:13.66:98,0,14 0/1:2,4:6:53.38:71,0,53 ./. 1/1:0,3:3:6.02:83,6,0 ./. 0/1:1,2:3:26.48:26,0,30 0/0:4,0:4:12.04:0,12,153 15 102264476 . C A 997.95 . AC=18;AF=0.220;AN=82;BaseQRankSum=-0.154;DP=226;Dels=0.00;FS=10.262;HRun=0;HaplotypeScore=0.2469;InbreedingCoeff=0.1535;MQ=56.99;MQ0=0;MQRankSum=1.834;QD=14.06;ReadPosRankSum=-0.199 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,75 0/0:3,0:3:9.03:0,9,110 0/0:2,0:2:6.02:0,6,70 0/1:4,4:8:45.06:45,0,115 0/1:2,8:10:48.49:258,0,48 0/0:10,0:10:21.05:0,21,251 0/0:3,0:3:9:0,9,96 0/0:12,0:12:33.10:0,33,396 0/1:1,2:3:14.68:54,0,15 1/1:0,4:4:9.03:106,9,0 0/1:3,2:5:35.74:36,0,68 0/1:0,1:1:1.76:36,3,0 0/0:3,0:3:9.03:0,9,108 0/1:0,2:2:0.97:71,6,0 0/0:16,0:16:39.11:0,39,453 0/0:4,0:4:12.02:0,12,119 0/0:2,1:3:6.01:0,6,64 0/0:1,0:1:3.01:0,3,32 0/0:8,0:8:21.05:0,21,236 0/0:7,0:7:21.05:0,21,232 0/0:7,0:7:18.05:0,18,209 0/0:7,0:7:18:0,18,179 0/0:17,0:17:48.15:0,48,616 0/1:2,6:8:43.71:195,0,44 0/1:7,3:10:80.31:80,0,202 0/1:3,2:5:27.97:28,0,103 ./. 0/0:3,0:3:9.03:0,9,113 1/1:0,2:2:6.02:74,6,0 0/1:1,1:2:23.61:24,0,32 1/1:0,3:3:6.02:76,6,0 0/0:9,0:9:24.06:0,24,280 0/0:8,0:8:24.07:0,24,285 0/1:2,1:3:27.95:28,0,64 0/0:2,0:2:3.01:0,3,38 0/1:2,2:5:52.96:58,0,53 0/0:7,0:7:18.05:0,18,221 0/0:4,0:4:12.03:0,12,131 0/0:4,0:4:9.03:0,9,118 0/0:2,0:2:6.02:0,6,69 0/0:7,0:7:15.05:0,15,191 0/0:4,0:4:9.02:0,9,102 15 102264535 . T C 486.22 . AC=23;AF=0.311;AN=74;BaseQRankSum=-7.662;DP=222;Dels=0.00;FS=192.252;HRun=2;HaplotypeScore=0.2643;InbreedingCoeff=-0.3340;MQ=57.40;MQ0=0;MQRankSum=2.031;QD=3.35;ReadPosRankSum=-7.637 GT:AD:DP:GQ:PL 0/0:4,1:5:9.02:0,9,97 0/0:3,0:3:9.02:0,9,96 0/0:1,0:1:3.01:0,3,35 0/1:6,4:10:36.15:36,0,182 0/1:10,5:15:23.21:23,0,305 0/1:8,7:15:63.57:64,0,225 0/1:5,4:9:43.23:43,0,132 0/1:5,4:9:52.36:52,0,131 0/1:3,2:5:18.56:19,0,86 0/1:1,2:3:27.42:27,0,30 0/0:3,1:4:8.62:0,9,84 0/0:1,0:1:3.01:0,3,36 0/0:1,1:2:3.01:0,3,38 0/1:3,3:6:16.41:16,0,62 0/1:4,4:8:22.32:22,0,100 ./. 0/1:1,2:3:1.76:0,3,31 ./. 0/0:4,0:4:9.01:0,9,94 0/0:9,3:12:21.06:0,21,251 0/0:4,2:6:12.01:0,12,132 0/1:3,7:10:55.30:103,0,55 0/1:7,7:14:7.52:8,0,186 1/1:0,1:1:3.01:33,3,0 0/1:4,5:9:27.95:28,0,68 0/1:4,4:8:24.56:25,0,63 0/0:2,0:2:3.01:0,3,38 0/1:2,2:4:24.57:25,0,41 1/1:2,1:3:2.50:9,3,0 ./. 0/0:1,0:1:3.01:0,3,36 0/0:9,7:16:18.89:0,19,183 0/1:1,3:4:28.78:46,0,29 0/0:1,0:1:3.01:0,3,35 ./. 0/1:1,1:2:15.67:16,0,27 0/0:4,2:6:9.03:0,9,106 ./. 0/1:2,2:4:17.66:18,0,64 0/0:2,1:3:3.01:0,3,37 0/1:2,1:3:19.62:20,0,62 0/0:5,1:6:12.04:0,12,148 15 102264591 . C A 56.67 . AC=1;AF=0.013;AN=80;BaseQRankSum=2.098;DP=184;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1819;InbreedingCoeff=0.2477;MQ=58.62;MQ0=0;MQRankSum=-0.305;QD=18.89;ReadPosRankSum=-0.466 GT:AD:DP:GQ:PL 0/0:3,0:3:9.02:0,9,100 0/0:5,1:6:15.04:0,15,168 ./. 0/0:8,0:8:24.05:0,24,253 0/0:11,0:11:33.10:0,33,392 0/0:8,0:8:21.06:0,21,249 0/0:7,0:7:21.06:0,21,246 0/0:8,0:8:18.05:0,18,206 0/0:2,0:2:3.01:0,3,34 0/0:3,0:3:9.02:0,9,95 0/0:3,0:3:9.03:0,9,103 0/0:1,0:1:3.01:0,3,31 0/0:3,0:3:9.02:0,9,97 0/0:3,0:3:9.02:0,9,98 0/0:8,0:8:21.05:0,21,229 0/0:1,0:1:3.01:0,3,35 0/0:4,0:4:12.04:0,12,146 ./. 0/0:4,0:4:12.03:0,12,125 0/0:8,0:8:21.04:0,21,223 0/0:5,0:5:15.04:0,15,164 0/0:4,0:4:12.03:0,12,133 0/0:10,0:10:30.09:0,30,353 0/0:6,0:6:15.04:0,15,165 0/0:7,0:7:18.05:0,18,208 0/0:7,0:7:18.05:0,18,211 0/0:2,0:2:6.02:0,6,71 0/0:5,0:5:15.03:0,15,155 0/0:2,0:2:6.02:0,6,72 0/0:2,0:2:6.02:0,6,71 0/0:2,0:2:6.01:0,6,62 0/0:7,0:7:21.06:0,21,233 0/0:4,0:4:12.03:0,12,127 0/1:0,3:3:0.51:111,9,0 0/0:1,0:1:3.01:0,3,32 0/0:3,0:3:9.02:0,9,97 0/0:7,0:7:21.05:0,21,224 0/0:2,0:2:6.02:0,6,70 0/0:3,0:3:9.03:0,9,104 0/0:3,0:3:6.02:0,6,69 0/0:2,0:2:6.01:0,6,60 0/0:6,0:6:18.05:0,18,199 16 113740 . G C 37.84 . AC=3;AF=0.036;AN=84;BaseQRankSum=-10.631;DP=1290;Dels=0.00;FS=63.959;HRun=1;HaplotypeScore=0.8247;InbreedingCoeff=-0.0823;MQ=57.66;MQ0=0;MQRankSum=0.760;QD=0.27;ReadPosRankSum=-7.205 GT:AD:DP:GQ:PL 0/0:17,8:26:1.13:5,0,374 0/0:17,5:22:33.04:0,33,326 0/0:15,3:18:27.03:0,27,277 0/0:45,12:57:78.10:0,78,825 0/0:48,12:61:90.18:0,90,979 0/0:37,6:43:69.14:0,69,753 0/0:22,6:28:36.01:0,36,349 0/0:32,4:36:63.03:0,63,638 0/0:17,2:19:42.10:0,42,457 0/0:21,6:27:24.44:0,24,492 0/0:18,2:20:14.48:0,14,419 0/0:12,5:17:0.29:12,0,121 0/0:17,4:21:36.04:0,36,367 0/0:12,1:14:15.03:0,15,152 0/1:43,26:69:70.78:71,0,749 0/0:16,9:25:16.35:0,16,336 0/0:12,6:18:18.05:0,18,200 0/0:17,3:20:6.38:0,6,275 0/0:22,9:32:0.94:6,0,421 0/0:38,10:48:78.12:0,78,808 0/0:38,14:53:2.64:1,0,729 0/0:28,7:35:63.11:0,63,671 0/0:49,19:68:60.50:0,61,891 0/0:20,5:25:19.54:0,20,482 0/0:32,6:38:54.06:0,54,578 0/0:30,4:34:60.07:0,60,607 0/0:19,4:23:36.05:0,36,381 0/0:17,3:21:42.04:0,42,415 0/0:22,8:30:42.11:0,42,470 0/0:16,2:18:39.06:0,39,393 0/1:15,8:23:20.12:20,0,301 0/0:38,3:41:63.11:0,63,702 0/0:27,7:34:48.11:0,48,507 0/0:14,4:19:30.05:0,30,320 0/0:19,1:20:33.07:0,33,345 0/0:22,6:28:42.02:0,42,411 0/1:31,14:46:12.78:13,0,561 0/0:13,1:14:30.05:0,30,311 0/0:18,6:25:39.06:0,39,410 0/0:25,2:27:11.11:0,11,443 0/0:18,7:25:20.37:0,20,371 0/0:20,2:22:51.05:0,51,503 16 216351 . G A 342.44 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.188;DP=420;Dels=0.00;FS=6.371;HRun=0;HaplotypeScore=0.2936;InbreedingCoeff=-0.0353;MQ=58.61;MQ0=0;MQRankSum=0.913;QD=12.68;ReadPosRankSum=1.625 GT:AD:DP:GQ:PL 0/0:7,0:7:21.06:0,21,248 0/0:10,0:10:30.10:0,30,378 0/0:9,0:9:24.08:0,24,314 0/0:20,0:20:51.16:0,51,672 0/0:20,0:20:57.18:0,57,747 0/1:5,8:13:99:262,0,122 0/1:9,5:14:99:143,0,246 0/0:13,0:13:30.10:0,30,402 0/0:4,0:4:12.02:0,12,139 0/0:11,0:11:24.08:0,24,322 0/0:8,0:8:24.07:0,24,288 0/0:7,0:7:21.05:0,21,245 0/0:2,0:2:6.02:0,6,77 0/0:8,0:8:21.07:0,21,268 0/0:23,0:23:63.20:0,63,788 0/0:6,0:6:18.05:0,18,223 0/0:6,0:6:18.06:0,18,235 0/0:3,0:3:9.03:0,9,115 0/0:13,0:13:33.08:0,33,392 0/0:11,0:11:33.09:0,33,392 0/0:11,0:11:27.08:0,27,331 0/0:8,0:8:24.06:0,24,283 0/0:20,0:20:60.19:0,60,785 0/0:12,0:12:33.11:0,33,442 0/0:19,0:19:54.17:0,54,700 0/0:18,0:18:45.13:0,45,607 0/0:2,0:2:6.01:0,6,64 0/0:6,0:6:18.06:0,18,224 0/0:10,0:10:27.09:0,27,345 0/0:10,0:10:30.09:0,30,362 0/0:7,0:7:18.05:0,18,225 0/0:12,0:12:36.11:0,36,441 0/0:8,0:8:24.07:0,24,290 0/0:8,0:8:24.07:0,24,292 0/0:7,0:7:21.05:0,21,250 0/0:11,0:11:24.06:0,24,296 0/0:9,0:9:24.07:0,24,294 0/0:5,0:5:15.05:0,15,190 0/0:4,0:4:9.03:0,9,120 0/0:9,0:9:27.08:0,27,332 0/0:6,0:6:18.06:0,18,227 0/0:9,0:10:27.08:0,27,337 16 216367 . G T 51.99 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.253;DP=327;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3560;InbreedingCoeff=-0.0250;MQ=58.62;MQ0=0;MQRankSum=0.384;QD=13.00;ReadPosRankSum=-0.347 GT:AD:DP:GQ:PL 0/0:7,0:7:21.06:0,21,249 0/0:7,0:8:21.05:0,21,246 0/0:10,0:10:27.08:0,27,343 0/0:13,0:13:33.10:0,33,429 0/0:15,0:15:39.13:0,39,509 0/0:11,0:11:33.11:0,33,440 0/0:12,0:12:30.10:0,30,396 0/0:8,0:8:24.06:0,24,300 0/0:4,0:4:12.04:0,12,150 0/0:8,0:8:21.06:0,21,264 0/0:8,0:8:24.07:0,24,286 0/0:5,0:5:15.03:0,15,166 0/0:4,0:4:12.03:0,12,135 0/0:9,0:9:27.07:0,27,319 0/0:17,0:17:48.15:0,48,602 0/0:8,0:8:24.05:0,24,277 0/0:6,0:6:18.06:0,18,228 0/1:1,3:4:26.54:98,0,27 0/0:10,0:10:30.06:0,30,335 0/0:6,0:6:15.03:0,15,173 0/0:12,0:12:30.07:0,30,353 0/0:5,0:5:15.04:0,15,176 0/0:14,0:14:42.13:0,42,554 0/0:8,0:8:24.08:0,24,308 0/0:17,0:17:51.15:0,51,643 0/0:9,0:9:27.07:0,27,343 0/0:2,0:2:3.01:0,3,39 0/0:4,0:4:12.04:0,12,143 0/0:7,0:7:18.06:0,18,227 0/0:5,0:5:15.05:0,15,191 0/0:4,0:4:12.04:0,12,150 0/0:8,0:8:24.08:0,24,300 0/0:8,0:8:21.07:0,21,262 0/0:6,0:6:18.03:0,18,211 0/0:3,0:3:9.03:0,9,108 0/0:8,0:8:24.07:0,24,289 0/0:8,0:8:21.06:0,21,243 0/0:3,0:3:9.03:0,9,109 0/0:3,0:3:9.02:0,9,102 0/0:7,0:7:21.07:0,21,261 0/0:4,0:4:12.04:0,12,150 0/0:9,0:9:21.07:0,21,262 16 216420 . G T 180.06 . AC=4;AF=0.049;AN=82;BaseQRankSum=0.482;DP=175;Dels=0.00;FS=1.357;HRun=0;HaplotypeScore=0.2523;InbreedingCoeff=-0.1124;MQ=57.76;MQ0=0;MQRankSum=0.120;QD=10.00;ReadPosRankSum=0.796 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,177 0/0:3,0:3:9.03:0,9,108 0/0:6,0:6:18.05:0,18,212 0/0:9,0:9:27.05:0,27,301 0/0:6,0:6:18.05:0,18,226 0/0:3,0:3:9.02:0,9,107 0/0:4,0:4:12.04:0,12,149 0/0:4,0:4:12.01:0,12,132 0/1:3,2:5:56.31:56,0,74 0/0:3,0:3:6.02:0,6,82 0/1:2,1:3:28.77:29,0,64 0/0:4,0:4:12.04:0,12,143 0/0:1,0:1:3.01:0,3,39 0/0:8,0:8:24.07:0,24,286 0/0:9,0:9:18.05:0,18,224 0/0:7,0:8:18.05:0,18,218 0/0:4,0:4:12.04:0,12,142 0/0:3,0:3:9.02:0,9,103 0/1:1,3:4:26.54:88,0,27 0/1:3,3:6:90.93:91,0,94 0/0:4,0:4:12.04:0,12,149 0/0:5,0:5:15.04:0,15,169 0/0:5,0:5:15.04:0,15,185 0/0:1,0:1:3.01:0,3,36 0/0:6,0:6:18.06:0,18,229 0/0:4,0:4:9.02:0,9,99 0/0:1,0:1:3.01:0,3,30 0/0:2,0:2:6.01:0,6,57 0/0:2,0:2:6.02:0,6,72 0/0:3,0:3:9.02:0,9,102 0/0:2,0:2:6.02:0,6,65 0/0:5,0:5:15.04:0,15,177 0/0:10,0:10:30.08:0,30,339 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.03:0,9,104 0/0:7,0:7:21.07:0,21,262 0/0:3,1:4:9.03:0,9,105 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:3.01:0,3,45 ./. 0/0:5,0:5:12.04:0,12,150 0/0:4,0:4:6.01:0,6,71 16 230578 . A G 297.24 . AC=10;AF=0.156;AN=64;BaseQRankSum=2.704;DP=91;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1517;InbreedingCoeff=0.0728;MQ=57.52;MQ0=0;MQRankSum=0.531;QD=12.38;ReadPosRankSum=0.128 GT:AD:DP:GQ:PL ./. 0/0:1,0:1:3.01:0,3,38 1/1:0,2:2:6.02:76,6,0 0/0:3,0:3:6.02:0,6,69 ./. 0/1:1,1:2:21.65:34,0,22 0/0:1,0:1:3.01:0,3,37 ./. 0/1:1,3:4:24.94:104,0,25 0/0:3,0:3:9.03:0,9,108 0/1:2,1:3:25.33:25,0,56 ./. 0/0:1,0:1:3.01:0,3,38 1/1:0,1:1:3.01:39,3,0 0/1:4,4:8:58.91:59,0,105 0/0:2,0:2:6.02:0,6,70 0/1:1,2:3:30.96:39,0,31 0/0:5,0:5:12.03:0,12,136 0/1:0,1:1:1.76:33,3,0 0/0:1,0:1:3.01:0,3,39 0/0:6,0:6:18.05:0,18,207 0/0:3,0:3:9.02:0,9,96 ./. 0/0:1,0:1:3.01:0,3,35 0/0:2,0:2:6.02:0,6,78 ./. ./. 0/0:4,0:4:9.03:0,9,120 ./. 0/0:3,0:3:9.03:0,9,107 0/0:4,0:4:12.03:0,12,136 0/0:5,0:5:15.04:0,15,170 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,38 0/0:9,0:9:18.06:0,18,243 ./. 0/0:2,0:2:3.01:0,3,33 0/0:2,0:2:6.01:0,6,66 ./. 0/0:4,0:4:9.03:0,9,110 0/0:1,0:1:3.01:0,3,38 0/0:2,0:2:6.02:0,6,78 16 230843 . C A 12.82 . AC=1;AF=0.013;AN=80;BaseQRankSum=-2.003;DP=137;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1369;InbreedingCoeff=-0.0995;MQ=58.84;MQ0=0;MQRankSum=0.829;QD=3.21;ReadPosRankSum=-1.108 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,70 0/0:7,0:7:18.06:0,18,234 0/0:2,0:2:6.02:0,6,74 0/0:1,0:1:3.01:0,3,40 0/0:5,0:5:15.05:0,15,207 ./. 0/0:2,0:2:6.02:0,6,73 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,36 0/0:2,0:2:6.02:0,6,76 0/0:3,0:3:9.03:0,9,117 0/0:4,0:4:12.04:0,12,151 0/0:2,0:2:6.02:0,6,77 0/0:1,0:1:3.01:0,3,39 0/0:10,0:10:21.07:0,21,279 0/0:7,0:7:18.06:0,18,230 0/0:3,0:3:6.02:0,6,76 0/0:4,0:4:9.03:0,9,115 0/0:11,0:11:24.08:0,24,308 0/0:7,0:7:18.04:0,18,216 0/0:6,0:6:12.04:0,12,153 0/0:3,0:3:9.03:0,9,114 0/0:5,0:5:15.05:0,15,209 0/0:3,0:3:9.03:0,9,127 0/0:1,0:1:3.01:0,3,30 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,79 0/1:2,2:4:57.57:58,0,64 ./. 0/0:6,0:6:18.06:0,18,224 0/0:1,0:1:3.01:0,3,34 0/0:5,0:5:15.05:0,15,186 0/0:2,0:2:6.02:0,6,75 0/0:2,0:2:6.02:0,6,76 0/0:4,0:4:12.04:0,12,152 0/0:5,0:5:12.04:0,12,152 0/0:2,0:2:6.02:0,6,76 0/0:2,0:2:6.02:0,6,77 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.03:0,9,115 0/0:1,0:1:3.01:0,3,38 0/0:3,0:3:9.03:0,9,117 16 304514 . C T 27826.97 . AC=16;AF=0.190;AN=84;BaseQRankSum=9.027;DP=6184;DS;Dels=0.00;FS=5.537;HRun=0;HaplotypeScore=4.2968;InbreedingCoeff=-0.0809;MQ=59.43;MQ0=0;MQRankSum=2.462;QD=14.31;ReadPosRankSum=-0.160 GT:AD:DP:GQ:PL 0/0:111,0:111:99:0,304,3408 0/0:95,0:95:99:0,271,3008 0/1:41,49:90:99:1455,0,1002 0/0:239,0:239:99:0,677,8294 0/1:137,113:250:99:3305,0,3910 0/0:240,0:240:99:0,659,8314 0/0:218,0:218:99:0,602,7577 0/1:94,94:188:99:2570,0,2768 0/1:44,52:97:99:1491,0,1105 0/1:47,48:95:99:1391,0,1159 0/1:67,37:104:99:1001,0,1865 0/1:57,52:109:99:1431,0,1573 0/1:45,39:84:99:1068,0,1155 0/0:103,0:103:99:0,298,3336 0/0:249,0:250:99:0,707,7907 0/0:108,0:108:99:0,301,3371 0/0:117,0:117:99:0,316,3553 0/0:116,0:116:99:0,319,3652 0/1:113,99:212:99:2711,0,2916 0/1:114,100:214:99:2861,0,2868 0/0:219,0:219:99:0,605,6803 0/0:150,0:150:99:0,427,4847 0/0:246,0:249:99:0,698,8842 0/0:180,0:180:99:0,478,6006 0/0:216,0:216:99:0,596,7506 0/0:221,0:221:99:0,608,7684 0/0:106,1:107:99:0,258,3282 0/0:98,0:98:99:0,274,3066 0/0:82,0:82:99:0,232,2559 0/0:98,0:99:99:0,274,3103 0/0:98,0:98:99:0,277,3131 0/0:211,0:212:99:0,590,6731 0/0:142,1:143:99:0,368,4507 0/1:61,43:104:99:1199,0,1667 0/0:110,0:110:99:0,310,3477 1/1:0,109:109:99:3691,313,0 0/0:207,1:208:99:0,556,6306 0/1:53,45:98:99:1152,0,1447 0/0:124,0:124:99:0,355,3984 0/1:64,49:113:99:1366,0,1701 0/1:37,41:78:99:1133,0,848 0/0:126,0:126:99:0,355,3939 16 309500 . C G 2921.75 . AC=1;AF=0.012;AN=84;BaseQRankSum=8.808;DP=8397;DS;Dels=0.00;FS=2.213;HRun=2;HaplotypeScore=3.7783;InbreedingCoeff=-0.0120;MQ=58.73;MQ0=0;MQRankSum=2.342;QD=15.71;ReadPosRankSum=-1.322 GT:AD:DP:GQ:PL 0/0:204,1:205:99:0,590,7387 0/0:196,0:196:99:0,560,7007 0/0:176,0:176:99:0,515,6465 0/0:193,0:193:99:0,560,7268 0/0:195,0:195:99:0,584,7754 0/0:169,0:169:99:0,494,6534 0/0:199,0:199:99:0,560,7340 0/0:185,0:185:99:0,533,6901 0/0:226,0:227:99:0,650,8268 0/0:156,0:156:99:0,439,5563 0/0:202,0:202:99:0,587,7375 0/0:187,0:187:99:0,533,6736 0/0:150,0:150:99:0,430,5423 0/0:197,0:197:99:0,578,7256 0/0:250,0:250:99:0,677,8392 0/0:182,0:183:99:0,530,6661 0/0:214,0:214:99:0,614,7613 0/0:188,0:188:99:0,548,6793 0/0:216,0:216:99:0,614,7601 0/0:217,0:217:99:0,608,7590 0/0:215,0:216:99:0,608,7521 0/0:209,0:209:99:0,596,7438 0/1:96,89:186:99:2968,0,3081 0/0:205,0:205:99:0,596,7845 0/0:208,0:208:99:0,596,7883 0/0:204,0:204:99:0,602,7866 0/0:183,0:183:99:0,536,6710 0/0:182,0:182:99:0,518,6505 0/0:157,0:157:99:0,445,5630 0/0:210,1:211:99:0,605,7635 0/0:174,0:174:99:0,500,6262 0/0:227,0:227:99:0,641,8003 0/0:222,0:222:99:0,626,7878 0/0:198,0:198:99:0,557,7035 0/0:223,0:223:99:0,638,7985 0/0:212,0:212:99:0,599,7595 0/0:227,1:229:99:0,635,7784 0/0:204,0:204:99:0,572,7173 0/0:242,0:242:99:0,692,8782 0/0:214,0:214:99:0,611,7621 0/0:186,1:187:99:0,542,6734 0/0:197,1:199:99:0,578,7227 16 323475 . C T 5.19 . AC=2;AF=0.028;AN=72;BaseQRankSum=0.374;DP=122;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0752;InbreedingCoeff=-0.1058;MQ=59.04;MQ0=0;MQRankSum=0.246;QD=1.30;ReadPosRankSum=1.573 GT:AD:DP:GQ:PL 0/0:2,0:2:5.99:0,6,60 0/0:1,0:1:3.01:0,3,32 0/0:6,0:6:15.04:0,15,174 0/0:2,0:2:6.02:0,6,76 0/0:5,0:5:12.04:0,12,161 0/0:2,0:2:6.02:0,6,73 ./. 0/0:2,0:2:6.02:0,6,76 0/0:2,0:2:6.02:0,6,76 0/0:3,0:3:9.03:0,9,116 0/0:1,0:1:3.01:0,3,38 0/0:5,0:5:15.04:0,15,178 ./. 0/0:6,0:6:18.05:0,18,206 0/0:8,0:8:21.05:0,21,229 0/0:4,0:4:12.03:0,12,141 0/0:2,0:2:6.02:0,6,66 ./. 0/0:3,0:3:9.02:0,9,102 0/0:4,0:4:9.03:0,9,118 0/0:5,0:5:9.03:0,9,109 0/0:2,0:2:6.02:0,6,75 0/1:1,1:2:31.78:32,0,36 ./. 0/0:4,0:4:9.03:0,9,113 0/1:1,1:2:30.96:31,0,33 ./. ./. 0/0:4,0:4:12.04:0,12,145 0/0:3,0:3:9.03:0,9,109 0/0:3,0:3:9.03:0,9,114 0/0:4,0:4:9.03:0,9,115 0/0:5,0:5:15.04:0,15,176 0/0:2,0:2:6.02:0,6,76 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,33 0/0:6,0:6:18.04:0,18,209 0/0:8,0:8:24.07:0,24,292 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6.02:0,6,72 0/0:3,0:4:6.01:0,6,65 0/0:4,0:4:12.03:0,12,143 16 333194 . C T 190.92 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.051;DP=542;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.2499;InbreedingCoeff=-0.0210;MQ=57.51;MQ0=0;MQRankSum=2.016;QD=17.36;ReadPosRankSum=1.381 GT:AD:DP:GQ:PL 0/0:17,0:17:45.14:0,45,544 0/0:7,0:7:21.07:0,21,256 0/0:4,0:4:12.04:0,12,143 0/0:28,0:28:84.26:0,84,1053 0/0:44,0:44:99:0,129,1653 0/0:15,0:15:45.14:0,45,580 0/0:15,0:15:42.13:0,42,541 0/0:12,0:12:36.10:0,36,448 0/0:8,0:8:24.07:0,24,296 0/0:3,0:3:9.03:0,9,105 0/0:5,0:5:15.05:0,15,191 0/0:6,0:6:18.05:0,18,207 0/0:7,0:7:21.06:0,21,254 0/0:5,0:5:12.02:0,12,129 0/0:34,0:34:96.28:0,96,1151 0/0:12,0:12:30.09:0,30,358 0/0:6,0:6:18.05:0,18,214 0/0:6,0:6:15.05:0,15,184 0/0:9,0:9:27.07:0,27,308 0/0:26,0:26:69.14:0,69,810 0/0:22,0:23:57.15:0,57,668 0/0:13,0:13:36.11:0,36,438 0/0:39,0:39:99:0,114,1471 0/0:14,0:14:42.13:0,42,544 0/0:14,0:14:42.12:0,42,515 0/0:14,0:14:42.13:0,42,530 0/0:9,0:9:27.08:0,27,332 0/0:10,0:10:30.09:0,30,356 0/0:3,0:3:9.03:0,9,110 0/0:11,0:11:33.09:0,33,389 0/0:4,0:4:12.03:0,12,142 0/0:15,0:15:45.14:0,45,556 0/0:18,0:18:54.15:0,54,629 0/0:12,0:12:36.10:0,36,420 0/0:9,0:9:27.08:0,27,329 0/0:12,0:12:33.10:0,33,402 0/0:9,0:10:21.03:0,21,227 0/0:12,0:12:36.11:0,36,424 0/0:10,0:10:30.09:0,30,356 0/1:1,5:6:18.92:161,0,19 0/0:10,0:10:30.09:0,30,345 0/1:2,3:5:59.73:92,0,60 16 333220 . G A 128.83 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.656;DP=744;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9006;InbreedingCoeff=-0.0200;MQ=58.06;MQ0=0;MQRankSum=-0.516;QD=11.71;ReadPosRankSum=-0.887 GT:AD:DP:GQ:PL 0/0:20,0:20:60.13:0,60,634 0/0:11,0:11:33.09:0,33,356 0/0:9,0:9:27.07:0,27,292 0/0:44,0:44:99:0,126,1407 0/0:59,0:59:99:0,162,1819 0/0:24,0:24:63.16:0,63,700 0/0:28,0:28:78.22:0,78,910 0/0:24,0:24:72.12:0,72,752 0/0:6,0:6:18.05:0,18,202 0/0:6,0:6:15.03:0,15,154 0/0:10,0:10:30.07:0,30,322 0/0:6,0:6:15.02:0,15,147 0/1:5,6:11:99:175,0,108 0/0:5,0:5:15.04:0,15,163 0/0:44,0:44:99:0,117,1236 0/0:13,1:14:1.74:0,2,331 0/0:13,0:13:36.09:0,36,390 0/0:10,0:10:30.08:0,30,326 0/0:13,0:13:27.04:0,27,283 0/0:27,0:27:72.18:0,72,790 0/0:26,0:26:66.15:0,66,723 0/0:17,0:17:45.09:0,45,487 0/0:51,0:51:99:0,141,1590 0/0:25,0:25:75.18:0,75,858 0/0:20,0:20:54.14:0,54,628 0/0:23,0:23:66.17:0,66,760 0/0:13,0:13:36.09:0,36,406 0/0:12,0:12:33.08:0,33,365 0/0:8,0:8:21.05:0,21,232 0/0:11,0:11:30.07:0,30,313 0/0:8,0:8:24.06:0,24,258 0/0:27,0:27:72.18:0,72,799 0/0:13,0:13:36.08:0,36,382 0/0:18,0:19:48.12:0,48,515 0/0:13,0:13:36.08:0,36,390 0/0:12,0:12:27.08:0,27,329 0/0:11,0:11:30.06:0,30,305 0/0:16,0:16:39.09:0,39,420 0/0:14,0:14:39.10:0,39,420 0/0:4,0:4:9.02:0,9,97 0/0:8,0:8:24.06:0,24,264 0/0:9,0:9:24.06:0,24,250 16 335531 . C T 461.01 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.227;DP=2057;Dels=0.00;FS=1.800;HRun=0;HaplotypeScore=3.4173;InbreedingCoeff=-0.0120;MQ=58.32;MQ0=0;MQRankSum=1.147;QD=10.98;ReadPosRankSum=2.176 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,105,1200 0/0:35,0:35:78.19:0,78,884 0/0:24,0:24:63.17:0,63,734 0/0:108,0:109:99:0,283,3395 0/0:127,0:127:99:0,325,3852 0/0:77,0:77:99:0,180,2136 0/0:63,0:63:99:0,153,1815 0/0:71,0:71:99:0,177,2141 0/0:30,0:31:72.19:0,72,836 0/0:41,0:41:90.23:0,90,1044 0/0:33,0:33:84.17:0,84,930 0/0:28,0:29:75.20:0,75,856 0/0:32,0:32:81.22:0,81,941 0/0:33,0:33:84.23:0,84,962 0/0:86,0:86:99:0,201,2245 0/0:28,0:28:75.19:0,75,843 0/0:34,0:35:75.19:0,75,876 0/0:21,0:21:48.12:0,48,542 0/0:60,0:60:99:0,153,1681 0/0:86,0:86:99:0,202,2325 0/0:41,0:41:99:0,114,1299 0/1:23,19:42:99:507,0,585 0/0:125,0:125:99:0,319,3761 0/0:58,0:58:99:0,144,1734 0/0:73,0:73:99:0,181,2172 0/0:72,0:73:99:0,171,2085 0/0:33,0:33:81.20:0,81,902 0/0:26,0:26:51.15:0,51,616 0/0:30,0:31:81.18:0,81,927 0/0:39,0:40:96.20:0,96,1034 0/0:27,0:27:69.19:0,69,812 0/0:76,0:76:99:0,186,2155 0/0:49,0:49:99:0,135,1500 0/0:20,0:20:57.13:0,57,642 0/0:35,2:38:42.45:0,42,918 0/0:30,0:30:66.15:0,66,757 0/0:51,0:51:99:0,117,1326 0/0:28,0:29:75.20:0,75,870 0/0:22,0:22:60.16:0,60,705 0/0:45,0:45:87.20:0,87,1015 0/0:35,0:35:72.20:0,72,848 0/0:29,0:29:69.18:0,69,806 16 335535 . C T 792.43 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.461;DP=1924;Dels=0.00;FS=20.648;HRun=0;HaplotypeScore=2.3903;InbreedingCoeff=-0.0244;MQ=58.43;MQ0=0;MQRankSum=0.769;QD=9.91;ReadPosRankSum=1.064 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,102,1138 0/0:30,0:30:84.21:0,84,938 0/0:27,0:27:69.17:0,69,781 0/0:99,0:99:99:0,271,3200 0/0:115,0:115:99:0,304,3672 0/0:65,0:65:99:0,171,2041 0/0:60,0:60:99:0,162,1934 0/0:66,0:66:99:0,165,2024 0/0:30,0:30:81.20:0,81,922 0/0:34,0:35:75.21:0,75,876 0/0:28,0:28:72.19:0,72,813 0/0:31,0:31:75.19:0,75,849 0/0:30,0:30:75.19:0,75,859 0/0:32,0:32:75.17:0,75,829 0/0:72,0:73:99:0,189,2103 0/0:29,0:29:75.21:0,75,870 0/0:32,0:32:78.21:0,78,875 0/1:9,12:22:99:319,0,184 0/1:35,23:58:99:536,0,862 0/0:80,0:80:99:0,195,2272 0/0:47,1:48:99:0,104,1555 0/0:42,0:42:99:0,117,1349 0/0:114,0:115:99:0,316,3775 0/0:49,0:49:99:0,129,1544 0/0:70,0:70:99:0,181,2223 0/0:72,0:72:99:0,180,2154 0/0:28,0:28:78.19:0,78,843 0/0:26,0:26:66.18:0,66,760 0/0:31,0:31:69.20:0,69,830 0/0:36,0:36:99:0,102,1123 0/0:25,0:25:69.15:0,69,757 0/0:74,0:74:99:0,180,2112 0/0:49,0:49:99:0,129,1439 0/0:23,0:23:63.17:0,63,724 0/0:29,0:29:72.19:0,72,814 0/0:28,0:28:69.18:0,69,778 0/0:45,0:45:99:0,120,1358 0/0:25,0:25:66.16:0,66,756 0/0:27,0:27:75.19:0,75,864 0/0:40,0:40:99:0,99,1097 0/0:31,0:31:84.22:0,84,953 0/0:28,0:28:60.18:0,60,727 16 335619 . G A 1315.92 . AC=3;AF=0.036;AN=84;BaseQRankSum=-8.103;DP=1852;Dels=0.00;FS=1.817;HRun=2;HaplotypeScore=1.0718;InbreedingCoeff=-0.0370;MQ=58.87;MQ0=0;MQRankSum=-0.767;QD=12.30;ReadPosRankSum=-1.242 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,123,1556 0/0:35,0:35:99:0,99,1243 0/0:22,0:22:60.16:0,60,742 0/0:102,0:103:99:0,289,3833 0/0:103,0:103:99:0,283,3847 0/0:69,0:69:99:0,193,2584 0/0:57,0:57:99:0,153,2090 0/0:60,0:60:99:0,172,2319 0/0:22,0:22:66.19:0,66,819 0/0:35,0:35:93.27:0,93,1175 0/0:27,0:27:78.25:0,78,986 0/0:27,0:27:75.24:0,75,941 0/0:28,0:28:78.23:0,78,976 0/0:28,0:28:84.27:0,84,1065 0/0:102,0:103:99:0,274,3509 0/0:32,1:33:96.30:0,96,1201 0/0:30,0:30:81.25:0,81,1037 0/0:21,0:21:60.18:0,60,749 0/0:45,0:46:99:0,129,1584 0/0:50,0:50:99:0,144,1809 0/0:50,0:50:99:0,144,1778 0/1:18,17:35:99:461,0,543 0/0:97,0:97:99:0,277,3718 0/0:59,0:59:99:0,160,2131 0/0:57,0:57:99:0,153,2076 0/0:61,0:61:99:0,160,2168 0/0:22,0:22:63.20:0,63,800 0/0:26,0:26:69.21:0,69,868 0/0:31,0:31:87.28:0,87,1109 0/0:31,0:31:87.28:0,87,1101 0/0:31,0:31:93.30:0,93,1181 0/0:68,1:69:99:0,187,2334 0/0:43,0:43:99:0,120,1516 0/0:28,0:28:78.25:0,78,1007 0/0:29,0:29:81.24:0,81,1017 0/0:31,0:31:84.27:0,84,1100 0/0:45,0:45:99:0,132,1651 0/0:39,0:39:99:0,108,1377 0/0:32,0:32:90.27:0,90,1116 0/1:17,21:38:99:613,0,492 0/0:20,0:20:60.19:0,60,761 0/1:21,13:34:99:317,0,654 16 335639 . G T 508.25 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.118;DP=1595;Dels=0.00;FS=0.842;HRun=0;HaplotypeScore=1.1299;InbreedingCoeff=-0.0121;MQ=58.92;MQ0=0;MQRankSum=1.241;QD=16.40;ReadPosRankSum=1.092 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,114,1464 0/0:30,0:30:78.24:0,78,976 0/0:18,0:18:54.16:0,54,662 0/0:90,0:90:99:0,223,2960 0/0:101,0:101:99:0,250,3385 0/0:47,0:47:99:0,123,1637 0/0:47,0:47:99:0,120,1607 0/0:47,0:47:99:0,120,1587 0/0:20,0:20:57.17:0,57,720 0/0:36,0:36:99:0,102,1297 0/0:29,0:29:81.23:0,81,1006 0/0:26,0:26:66.21:0,66,837 0/0:21,0:21:63.18:0,63,766 0/0:24,0:24:69.19:0,69,841 0/0:85,0:85:99:0,220,2762 0/0:23,0:23:66.21:0,66,822 0/0:34,0:34:87.27:0,87,1103 0/0:12,0:12:33.10:0,33,414 0/0:36,1:37:65.32:0,65,1171 0/0:37,0:37:99:0,99,1234 0/0:51,0:51:99:0,132,1603 0/0:31,0:31:72.23:0,72,928 0/0:75,0:75:99:0,193,2550 0/0:45,0:45:99:0,111,1511 0/0:54,0:54:99:0,123,1701 0/0:65,0:65:99:0,166,2179 0/0:26,0:26:66.21:0,66,852 0/0:24,1:25:36.07:0,36,807 0/0:28,0:28:72.23:0,72,923 0/0:26,0:26:75.21:0,75,936 0/0:30,0:30:84.23:0,84,1034 0/0:57,0:57:99:0,153,1947 0/0:38,0:38:99:0,105,1319 0/0:20,0:20:60.18:0,60,746 0/0:27,0:27:75.22:0,75,915 0/1:12,19:31:99:554,0,320 0/0:34,0:34:96.27:0,96,1134 0/0:28,0:28:78.24:0,78,967 0/0:23,0:23:60.18:0,60,754 0/0:29,0:29:69.20:0,69,880 0/0:19,0:19:54.17:0,54,690 0/0:27,0:27:75.23:0,75,956 16 336377 . C G 406.34 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.352;DP=1941;Dels=0.00;FS=1.023;HRun=0;HaplotypeScore=1.7588;InbreedingCoeff=-0.0120;MQ=59.19;MQ0=0;MQRankSum=-1.073;QD=10.69;ReadPosRankSum=-1.405 GT:AD:DP:GQ:PL 0/0:33,0:33:93.29:0,93,1157 0/0:33,0:33:90.26:0,90,1086 0/0:20,0:20:54.16:0,54,665 0/0:96,0:96:99:0,259,3354 0/0:79,0:79:99:0,208,2706 0/0:64,0:64:99:0,162,2073 0/0:41,0:41:96.26:0,96,1210 0/0:50,0:50:99:0,135,1797 0/0:50,0:50:99:0,135,1625 0/0:29,0:29:72.21:0,72,900 0/0:35,0:35:96.29:0,96,1160 0/0:24,0:24:66.16:0,66,770 0/0:33,0:33:84.26:0,84,1046 0/0:39,0:39:99:0,108,1338 0/0:129,0:129:99:0,319,3932 0/0:34,0:34:99:0,99,1212 0/0:42,0:42:99:0,105,1327 0/0:33,0:33:90.25:0,90,1091 0/0:57,0:57:99:0,156,1890 0/0:55,0:57:99:0,141,1726 0/0:62,0:63:99:0,156,1985 0/1:21,17:38:99:453,0,555 0/0:86,0:86:99:0,223,2954 0/0:41,0:41:99:0,117,1525 0/0:72,0:72:99:0,187,2416 0/0:49,0:50:99:0,117,1522 0/0:17,0:17:45.14:0,45,562 0/0:32,0:32:72.22:0,72,902 0/0:29,0:29:75.20:0,75,919 0/0:27,0:27:75.21:0,75,900 0/0:31,0:31:93.28:0,93,1150 0/0:82,0:82:99:0,202,2463 0/0:34,0:34:90.23:0,90,1090 0/0:36,0:36:99:0,99,1209 0/0:32,0:32:87.27:0,87,1085 0/0:39,0:39:99:0,105,1304 0/0:88,0:88:99:0,229,2739 0/0:30,0:30:78.24:0,78,982 0/0:36,0:36:93.27:0,93,1153 0/0:39,0:39:99:0,99,1255 0/0:30,0:30:75.22:0,75,930 0/0:31,0:31:81.23:0,81,984 16 336396 . G A 13581.65 . AC=16;AF=0.190;AN=84;BaseQRankSum=11.039;DP=2130;Dels=0.00;FS=4.544;HRun=0;HaplotypeScore=1.4204;InbreedingCoeff=0.0735;MQ=59.05;MQ0=0;MQRankSum=3.693;QD=17.17;ReadPosRankSum=5.113 GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,102,1119 0/0:37,0:37:99:0,102,1199 0/0:31,0:31:84.22:0,84,963 0/0:110,0:110:99:0,310,3740 0/0:76,0:76:99:0,214,2699 0/0:60,0:61:99:0,175,2123 0/0:51,0:51:99:0,135,1678 0/0:59,0:59:99:0,166,2049 0/0:54,0:54:99:0,147,1686 0/0:26,0:26:69.17:0,69,804 0/1:21,28:49:99:794,0,545 0/1:9,14:23:99:428,0,233 1/1:0,42:42:99:1352,108,0 0/0:48,0:48:99:0,126,1430 0/1:55,85:140:99:2258,0,1280 0/0:38,0:38:99:0,99,1116 0/1:27,23:50:99:674,0,675 0/1:21,14:35:99:383,0,552 0/1:27,38:65:99:1031,0,597 0/0:61,0:61:99:0,165,1905 0/0:60,0:60:99:0,159,1879 0/0:29,0:29:75.15:0,75,814 0/0:106,1:107:99:0,265,3664 1/1:0,49:49:99:1728,138,0 0/1:38,38:76:99:1071,0,988 0/1:27,22:49:99:631,0,810 0/0:23,0:23:60.16:0,60,671 0/0:37,0:37:84.21:0,84,980 0/0:33,0:33:84.24:0,84,998 0/0:25,0:25:75.18:0,75,810 0/0:39,0:39:99:0,111,1274 0/1:41,47:88:99:1180,0,1028 0/1:19,17:36:99:495,0,490 0/1:16,29:45:99:871,0,360 0/0:37,0:37:99:0,99,1164 0/1:21,23:44:99:686,0,574 0/0:90,0:91:99:0,226,2677 0/0:34,0:34:93.24:0,93,1072 0/0:38,0:38:99:0,105,1191 0/0:32,0:34:84.24:0,84,996 0/0:33,0:33:96.28:0,96,1134 0/0:32,0:33:90.24:0,90,1019 16 336421 . G A 384.22 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.347;DP=2207;Dels=0.00;FS=1.036;HRun=2;HaplotypeScore=1.4124;InbreedingCoeff=-0.0120;MQ=59.16;MQ0=0;MQRankSum=0.310;QD=12.01;ReadPosRankSum=1.096 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,111,1404 0/0:34,0:34:99:0,102,1274 0/0:34,0:34:99:0,99,1222 0/0:122,0:122:99:0,340,4429 0/0:77,0:77:99:0,217,2814 0/0:69,0:69:99:0,190,2434 0/0:62,0:62:99:0,175,2277 0/0:76,0:76:99:0,205,2706 0/0:49,0:49:99:0,132,1666 0/0:30,0:30:81.25:0,81,1008 0/0:49,0:49:99:0,138,1695 0/0:30,0:30:87.28:0,87,1102 0/0:44,0:44:99:0,126,1588 0/0:38,0:38:99:0,108,1318 0/0:127,0:127:99:0,337,4310 0/0:32,1:33:87.26:0,87,1080 0/0:51,0:51:99:0,141,1781 0/0:34,0:34:99:0,102,1262 0/0:58,0:58:99:0,159,2025 0/0:69,0:69:99:0,178,2251 0/0:35,0:36:99:0,99,1249 0/0:30,0:30:81.25:0,81,1003 0/0:127,0:127:99:0,364,4763 0/0:64,0:64:99:0,184,2503 0/0:85,0:85:99:0,235,3129 0/0:63,0:63:99:0,172,2330 0/0:29,0:29:81.26:0,81,1024 0/0:49,0:49:99:0,132,1662 0/0:26,0:26:75.19:0,75,912 0/0:35,0:36:93.25:0,93,1115 0/1:17,15:32:99:430,0,521 0/0:89,0:89:99:0,229,2949 0/0:35,0:35:93.30:0,93,1198 0/0:49,0:49:99:0,132,1675 0/0:38,0:38:99:0,114,1440 0/0:44,0:44:99:0,120,1506 0/0:68,0:68:99:0,181,2283 0/0:31,0:31:87.27:0,87,1096 0/0:38,0:38:99:0,102,1288 0/0:40,0:40:99:0,114,1413 0/0:28,0:28:72.22:0,72,922 0/0:42,0:42:99:0,123,1516 16 420140 . G A 2688.44 . AC=17;AF=0.202;AN=84;BaseQRankSum=-7.259;DP=370;Dels=0.00;FS=0.439;HRun=0;HaplotypeScore=0.4333;InbreedingCoeff=-0.0574;MQ=58.92;MQ0=0;MQRankSum=1.376;QD=16.91;ReadPosRankSum=3.541 GT:AD:DP:GQ:PL 0/0:9,0:9:27.08:0,27,329 0/0:8,0:8:21.07:0,21,262 0/0:5,0:5:12.04:0,12,158 0/0:15,0:15:45.15:0,45,591 0/0:14,0:14:42.13:0,42,541 0/0:8,0:8:18.06:0,18,241 0/0:9,0:9:27.08:0,27,343 0/0:10,0:10:27.09:0,27,372 0/1:7,12:19:99:355,0,213 0/0:3,0:3:9.03:0,9,112 0/1:5,4:9:99:126,0,117 0/1:4,3:7:42.44:42,0,137 0/0:5,0:5:15.05:0,15,188 0/1:5,3:8:83.98:84,0,160 0/0:18,0:18:51.14:0,51,611 0/0:11,0:11:33.10:0,33,407 0/0:7,0:7:21.07:0,21,267 0/1:2,4:6:55:119,0,55 1/1:0,16:16:45.12:538,45,0 0/1:5,6:11:99:164,0,154 0/1:6,4:10:99:115,0,168 0/0:4,0:4:12.04:0,12,152 0/1:9,13:22:99:339,0,260 0/0:5,0:5:15.05:0,15,196 0/0:12,0:12:36.11:0,36,467 0/0:5,0:5:15.04:0,15,188 0/1:2,2:4:58.26:58,0,61 0/0:7,0:7:21.07:0,21,268 0/1:1,3:4:24.09:97,0,24 0/1:2,5:7:56.83:143,0,57 0/0:6,0:6:18.06:0,18,221 0/1:1,11:12:2.61:347,1,0 0/1:2,5:7:55.92:154,0,56 0/0:9,0:9:27.08:0,27,330 0/1:3,3:6:60.54:61,0,101 0/0:3,0:4:9.03:0,9,106 0/0:14,0:14:42.10:0,42,498 0/0:4,0:4:12.02:0,12,139 0/1:7,4:11:99:116,0,208 0/0:6,0:6:18.05:0,18,216 0/0:7,0:7:18.04:0,18,209 0/0:6,0:6:18.06:0,18,220 16 420179 . G A 1617.38 . AC=15;AF=0.179;AN=84;BaseQRankSum=-6.278;DP=299;Dels=0.00;FS=3.415;HRun=1;HaplotypeScore=0.3942;InbreedingCoeff=0.0622;MQ=58.54;MQ0=0;MQRankSum=1.192;QD=14.19;ReadPosRankSum=2.917 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,185 0/0:4,0:4:9.03:0,9,113 0/0:5,0:5:12.04:0,12,149 0/0:11,0:11:30.10:0,30,398 0/0:13,0:13:39.13:0,39,518 0/0:11,0:11:30.10:0,30,391 0/0:12,0:12:33.10:0,33,419 0/0:5,0:5:12.04:0,12,157 0/1:6,6:12:99:151,0,153 0/0:7,0:7:21.07:0,21,263 0/1:5,2:7:52.45:52,0,131 1/1:1,2:3:6.02:66,6,0 0/0:5,0:5:15.05:0,15,186 0/1:2,6:8:19.74:175,0,20 0/0:13,0:13:27.08:0,27,321 0/0:4,0:4:12.04:0,12,150 0/0:3,0:3:6.02:0,6,71 0/1:1,3:4:27.10:68,0,27 1/1:0,6:7:18.05:203,18,0 0/1:9,7:16:99:150,0,253 0/1:1,10:11:3.88:320,0,4 0/1:4,2:6:55.05:55,0,126 0/1:11,12:23:99:268,0,302 0/0:13,0:13:36.12:0,36,484 0/0:7,0:7:21.07:0,21,274 0/0:4,0:4:12.04:0,12,158 0/0:1,0:1:3.01:0,3,36 0/0:5,0:5:15.05:0,15,186 0/1:1,3:4:25.77:90,0,26 0/0:3,0:3:9.03:0,9,116 0/0:5,0:5:15.05:0,15,191 0/1:2,4:7:55.77:124,0,56 0/0:11,0:11:21.06:0,21,267 0/0:5,0:5:12.04:0,12,149 0/0:3,0:3:9.03:0,9,109 0/0:3,0:3:9.03:0,9,116 0/0:4,0:4:9.03:0,9,110 0/0:4,0:4:12.04:0,12,147 0/1:3,3:6:54.44:54,0,85 0/0:8,0:8:21.04:0,21,250 0/0:6,0:6:18.06:0,18,220 0/0:5,0:5:12.04:0,12,150 16 450309 . C T 22196.67 . AC=39;AF=0.464;AN=84;BaseQRankSum=-2.684;DP=2188;Dels=0.00;FS=23.295;HRun=0;HaplotypeScore=1.6912;InbreedingCoeff=-0.0051;MQ=58.44;MQ0=0;MQRankSum=-0.276;QD=17.48;ReadPosRankSum=-1.740 GT:AD:DP:GQ:PL 0/1:11,12:23:99:287,0,280 0/1:23,17:40:99:404,0,497 1/1:0,29:29:81.24:963,81,0 0/0:148,0:149:99:0,379,4584 0/0:118,0:118:99:0,319,3900 0/1:52,21:73:99:451,0,1364 1/1:0,40:40:99:1167,99,0 0/0:92,0:92:99:0,256,3190 0/1:21,22:43:99:552,0,535 0/1:20,19:40:99:515,0,541 0/1:19,12:31:99:300,0,557 0/0:34,1:35:66.14:0,66,1064 0/1:24,5:29:99:100,0,672 0/1:14,16:30:99:394,0,363 1/1:0,108:109:99:3357,292,0 1/1:0,37:37:99:1267,111,0 0/1:20,20:41:99:566,0,413 0/0:37,0:37:99:0,102,1121 0/0:65,0:65:99:0,177,1976 0/0:103,0:103:99:0,286,3244 0/1:30,35:65:99:989,0,742 1/1:1,42:45:90.72:1339,91,0 0/0:136,0:136:99:0,355,4374 0/1:38,15:54:99:378,0,1131 0/1:44,19:64:99:402,0,1249 0/1:37,21:58:99:498,0,1023 0/1:17,17:34:99:481,0,457 1/1:0,38:39:99:1202,105,0 0/0:25,0:25:69.19:0,69,783 0/1:24,11:37:99:247,0,625 0/1:21,8:29:99:204,0,493 0/0:61,1:62:99:0,128,1797 0/0:61,0:61:99:0,156,1792 0/1:17,11:28:99:311,0,433 0/0:35,0:35:93.24:0,93,1040 1/1:0,32:32:90.25:1051,90,0 1/1:0,59:59:99:2023,171,0 1/1:0,36:37:99:1226,105,0 0/1:13,17:30:99:475,0,295 0/1:14,18:32:99:500,0,371 0/1:22,14:36:99:361,0,659 0/1:17,8:26:99:188,0,457 16 601614 . G A 464.44 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.953;DP=2177;Dels=0.00;FS=11.591;HRun=0;HaplotypeScore=1.9660;InbreedingCoeff=-0.0120;MQ=58.62;MQ0=0;MQRankSum=0.022;QD=13.27;ReadPosRankSum=1.064 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,102,1195 0/0:35,0:35:90.24:0,90,1071 0/0:37,0:38:99:0,105,1259 0/0:117,0:117:99:0,313,3896 0/0:96,0:96:99:0,283,3547 0/0:61,0:61:99:0,172,2200 0/1:18,17:35:99:511,0,528 0/0:61,0:61:99:0,177,2149 0/0:41,0:41:99:0,111,1294 0/0:35,0:35:90.27:0,90,1085 0/0:39,0:39:99:0,108,1277 0/0:40,0:40:99:0,111,1308 0/0:22,0:22:66.19:0,66,791 0/0:41,0:41:99:0,105,1286 0/0:92,0:93:99:0,265,3111 0/0:53,0:54:99:0,147,1781 0/0:37,1:38:73.76:0,74,1216 0/0:37,1:38:68.32:0,68,1181 0/0:71,1:72:99:0,150,2093 0/0:86,0:88:99:0,238,2895 0/0:71,0:72:99:0,190,2275 0/0:71,0:71:99:0,199,2355 0/0:107,0:107:99:0,295,3802 0/0:56,0:57:99:0,147,1814 0/0:46,1:47:92.95:0,93,1514 0/0:46,0:46:99:0,126,1583 0/0:36,0:36:99:0,102,1268 0/0:30,0:30:90.23:0,90,1054 0/0:34,0:35:96.27:0,96,1175 0/0:28,0:28:84.24:0,84,988 0/0:45,0:45:99:0,129,1554 0/0:61,0:61:99:0,171,2053 0/0:63,0:63:99:0,181,2114 0/0:40,0:40:99:0,114,1381 0/0:51,0:51:99:0,132,1551 0/0:35,0:35:99:0,102,1212 0/0:70,0:71:99:0,187,2234 0/0:37,0:37:99:0,105,1234 0/0:38,0:38:99:0,102,1206 0/0:40,0:40:99:0,117,1360 0/0:39,0:39:99:0,117,1359 0/0:44,0:44:99:0,123,1471 16 601632 . T C 30288.72 . AC=48;AF=0.571;AN=84;BaseQRankSum=-13.078;DP=1986;Dels=0.00;FS=9.851;HRun=0;HaplotypeScore=1.7052;InbreedingCoeff=-0.1803;MQ=58.56;MQ0=0;MQRankSum=-0.004;QD=17.49;ReadPosRankSum=-0.310 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1193,105,0 1/1:0,28:28:69.17:759,69,0 1/1:0,34:34:96.25:1088,96,0 1/1:1,101:102:99:3021,216,0 0/1:40,33:76:99:832,0,1142 0/1:27,23:52:99:653,0,791 1/1:0,33:33:87.25:1041,87,0 0/1:32,26:59:99:655,0,852 1/1:0,39:39:99:1136,102,0 0/1:17,15:34:99:367,0,505 0/1:17,16:33:99:386,0,458 0/0:26,0:27:75.20:0,75,885 0/1:7,15:23:99:344,0,190 0/0:40,0:42:99:0,117,1398 1/1:0,74:74:99:2243,207,0 1/1:0,54:54:99:1683,156,0 0/1:13,11:24:99:249,0,410 0/1:21,19:40:99:474,0,585 0/1:22,34:58:99:831,0,601 0/1:41,36:78:99:863,0,1034 0/1:30,36:68:99:914,0,804 0/1:27,32:60:99:676,0,749 0/1:57,49:112:99:1217,0,1557 0/0:46,0:49:99:0,132,1524 0/1:22,19:41:99:429,0,546 0/1:18,20:38:99:549,0,503 0/0:33,0:33:93.27:0,93,1116 0/1:21,16:37:99:412,0,616 0/1:16,10:29:99:229,0,482 0/1:20,17:37:99:405,0,569 0/1:20,14:36:99:353,0,567 0/1:27,32:61:99:799,0,763 0/0:62,1:63:99:0,142,2034 1/1:0,41:41:99:1184,105,0 0/1:28,21:49:99:440,0,803 1/1:2,26:28:2.96:707,3,0 1/1:0,67:67:99:2045,183,0 0/1:24,16:41:99:369,0,621 1/1:0,35:35:93.19:994,93,0 0/0:39,0:40:99:0,114,1328 0/1:15,19:34:99:439,0,431 0/1:19,15:35:99:310,0,582 16 603471 . A G 25482.45 . AC=48;AF=0.571;AN=84;BaseQRankSum=14.360;DP=1685;Dels=0.00;FS=2.904;HRun=0;HaplotypeScore=1.2443;InbreedingCoeff=-0.1675;MQ=58.88;MQ0=0;MQRankSum=-1.297;QD=20.16;ReadPosRankSum=-2.032 GT:AD:DP:GQ:PL 0/1:12,13:27:99:357,0,239 0/1:13,14:27:99:393,0,316 1/1:1,24:25:66.13:765,66,0 0/0:108,0:109:99:0,301,3350 0/0:109,0:109:99:0,313,3505 0/1:32,28:60:99:811,0,831 0/1:31,28:59:99:805,0,750 0/1:38,28:66:99:862,0,966 1/1:0,26:26:69.21:838,69,0 0/1:17,12:29:99:327,0,465 0/1:6,10:16:99:269,0,132 0/1:17,7:24:99:157,0,431 0/0:13,0:13:36.07:0,36,385 0/1:12,11:24:99:308,0,298 1/1:0,90:92:99:2731,229,0 0/1:10,11:21:99:305,0,234 0/1:8,11:19:99:202,0,223 1/1:0,20:20:54.14:649,54,0 1/1:0,38:38:99:1235,105,0 1/1:1,51:52:99:1600,129,0 1/1:0,56:57:99:1804,150,0 1/1:2,28:30:47.63:885,48,0 0/0:110,0:112:99:0,310,3500 0/0:54,0:55:99:0,150,1688 0/1:26,34:60:99:1096,0,632 0/1:26,12:39:99:298,0,637 0/1:12,8:22:99:240,0,283 0/1:14,21:35:99:607,0,365 0/1:10,7:17:99:210,0,295 0/1:14,9:23:99:214,0,363 0/1:12,9:21:99:228,0,343 1/1:0,53:53:99:1667,141,0 0/1:20,20:41:99:535,0,429 1/1:0,17:17:45.14:555,45,0 0/1:15,16:31:99:453,0,351 0/1:14,13:28:99:364,0,396 1/1:1,57:59:99:1910,159,0 0/1:13,15:28:99:397,0,278 0/1:13,18:31:99:475,0,274 0/1:14,14:28:99:390,0,369 1/1:1,18:19:16.79:541,17,0 0/0:23,0:23:57.15:0,57,641 16 626208 . G A 16.03 . AC=3;AF=0.039;AN=76;BaseQRankSum=-4.490;DP=127;Dels=0.00;FS=19.114;HRun=2;HaplotypeScore=0.1302;InbreedingCoeff=0.1023;MQ=58.20;MQ0=0;MQRankSum=-1.615;QD=2.00;ReadPosRankSum=-1.899 GT:AD:DP:GQ:PL 0/0:1,1:2:3.01:0,3,39 0/0:2,0:2:6.02:0,6,76 0/0:2,0:2:3.01:0,3,39 0/0:6,0:6:18.05:0,18,225 0/0:3,0:3:9.03:0,9,122 0/0:1,0:1:3.01:0,3,32 ./. 0/0:1,0:1:3.01:0,3,42 0/0:1,0:1:3.01:0,3,33 0/0:1,0:1:3.01:0,3,37 0/0:2,1:3:6.01:0,6,64 0/0:5,1:6:15.04:0,15,175 0/1:2,1:3:1.76:31,3,0 0/0:1,0:1:3.01:0,3,37 0/0:4,1:5:9.03:0,9,111 0/0:3,1:4:9.01:0,9,95 0/0:2,2:4:3.01:0,3,37 0/0:2,0:2:6.02:0,6,76 0/1:1,2:3:27.42:27,0,33 0/0:5,1:6:9.03:0,9,113 0/1:0,2:2:1.76:33,3,0 0/0:6,0:6:12.03:0,12,145 0/0:9,0:9:24.06:0,24,286 0/0:2,0:2:6.02:0,6,75 0/0:3,0:3:3:0,3,29 0/0:1,0:1:2.99:0,3,23 0/0:2,0:2:6.02:0,6,74 ./. 0/0:2,1:3:6.02:0,6,74 0/0:1,0:1:3.01:0,3,39 0/0:4,1:5:12.04:0,12,154 0/0:8,0:8:24.07:0,24,296 0/0:3,0:3:6.02:0,6,77 0/0:4,0:4:9.03:0,9,116 0/0:1,1:2:3.01:0,3,39 0/0:1,1:2:3.01:0,3,38 0/0:2,0:2:3.01:0,3,38 0/0:5,0:5:12.03:0,12,137 0/0:5,2:7:15.04:0,15,167 ./. ./. 0/0:3,0:3:9.03:0,9,114 16 632283 . G A 872.69 . AC=11;AF=0.131;AN=84;BaseQRankSum=2.899;DP=572;Dels=0.00;FS=2.075;HRun=0;HaplotypeScore=0.7080;InbreedingCoeff=-0.1603;MQ=57.76;MQ0=0;MQRankSum=0.711;QD=7.21;ReadPosRankSum=4.203 GT:AD:DP:GQ:PL 0/0:9,0:9:27.07:0,27,300 0/0:7,0:7:15.04:0,15,165 0/0:9,0:9:24.06:0,24,280 0/0:32,0:32:75.23:0,75,991 0/0:36,0:36:81.23:0,81,1037 0/0:28,0:28:66.21:0,66,863 0/0:19,0:19:42.13:0,42,551 0/0:28,0:29:69.21:0,69,871 0/1:3,3:6:63.16:63,0,87 0/1:8,2:10:47.62:48,0,177 0/0:7,0:7:21.06:0,21,233 0/0:9,0:9:27.08:0,27,315 0/0:2,0:2:6.01:0,6,65 0/1:4,3:7:59.22:59,0,113 0/0:38,0:38:93.27:0,93,1138 0/0:10,0:10:30.08:0,30,348 0/0:9,0:9:24.07:0,24,280 0/1:2,1:3:30.29:30,0,70 0/1:6,4:10:99:113,0,175 0/1:5,1:6:15.55:16,0,128 0/0:9,0:9:24.07:0,24,288 0/0:7,0:7:21.05:0,21,243 0/0:33,0:33:87.26:0,87,1075 0/1:14,4:18:84.90:85,0,408 0/1:16,7:23:99:204,0,407 0/0:13,0:13:33.09:0,33,421 0/1:6,6:12:99:169,0,139 0/0:8,0:8:21.06:0,21,243 0/1:6,3:9:83.84:84,0,173 0/0:12,0:12:33.09:0,33,391 0/0:11,0:11:27.07:0,27,314 0/1:11,6:17:99:141,0,278 0/0:11,0:11:33.07:0,33,374 0/0:10,0:10:30.08:0,30,335 0/0:10,0:10:27.07:0,27,306 0/0:1,0:1:3:0,3,26 0/0:32,0:32:75.20:0,75,894 0/0:8,0:8:21.07:0,21,260 0/0:9,0:9:27.05:0,27,272 0/0:15,0:15:42.12:0,42,489 0/0:11,0:11:33.09:0,33,386 0/0:7,0:7:15.05:0,15,188 16 681279 . C T 54.07 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.064;DP=322;Dels=0.01;FS=2.563;HRun=0;HaplotypeScore=1.7796;InbreedingCoeff=0.4612;MQ=58.74;MQ0=0;MQRankSum=0.952;QD=13.52;ReadPosRankSum=0.212 GT:AD:DP:GQ:PL 0/0:5,0:5:15.03:0,15,168 0/0:5,0:5:15.04:0,15,178 0/0:9,0:9:27.08:0,27,320 0/0:16,0:16:48.13:0,48,560 0/0:20,0:20:57.17:0,57,721 0/0:5,0:5:15.04:0,15,176 0/0:15,0:15:45.13:0,45,543 0/0:6,0:6:18.06:0,18,229 0/0:9,0:9:27.07:0,27,327 0/0:6,0:6:18.05:0,18,213 0/0:5,0:5:12.02:0,12,133 0/0:8,0:8:18.05:0,18,226 0/0:4,0:4:9.03:0,9,116 0/0:7,0:7:21.06:0,21,248 0/0:9,0:9:24.06:0,24,282 0/0:11,0:11:30.09:0,30,352 0/0:5,0:5:15.04:0,15,177 0/0:2,0:2:6.01:0,6,61 0/0:7,0:7:21.05:0,21,239 0/0:11,0:11:33.10:0,33,403 0/0:6,0:6:18.06:0,18,221 0/0:6,0:6:15.05:0,15,188 0/0:22,0:22:66.21:0,66,843 0/0:6,0:6:18.06:0,18,244 0/0:18,0:18:51.12:0,51,603 0/0:12,0:12:36.07:0,36,404 0/0:2,0:2:6.02:0,6,67 0/0:4,0:4:9.02:0,9,96 0/0:10,0:10:30.09:0,30,365 0/0:13,0:13:36.10:0,36,431 0/0:4,0:4:12.03:0,12,143 0/0:7,0:7:18.05:0,18,220 0/0:4,0:4:12.03:0,12,138 0/0:1,0:1:3.01:0,3,32 0/1:1,3:4:0.51:109,9,0 0/0:4,0:4:9.03:0,9,108 0/0:6,0:6:18.05:0,18,206 0/0:7,0:7:18.05:0,18,216 0/0:4,0:4:12.04:0,12,147 0/0:3,0:3:9.02:0,9,103 0/0:8,0:8:24.07:0,24,286 0/0:4,0:4:12.04:0,12,153 16 681280 . G T 1401.74 . AC=13;AF=0.155;AN=84;BaseQRankSum=5.481;DP=334;Dels=0.01;FS=1.268;HRun=0;HaplotypeScore=1.8508;InbreedingCoeff=-0.0484;MQ=58.78;MQ0=0;MQRankSum=-1.114;QD=13.10;ReadPosRankSum=0.001 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,163 0/1:4,1:5:21.94:22,0,123 1/1:0,9:9:27.08:328,27,0 0/0:17,0:17:51.14:0,51,591 0/1:10,12:22:99:324,0,290 0/0:5,0:5:15.05:0,15,182 0/0:14,0:15:42.12:0,42,501 0/0:6,0:6:18.05:0,18,217 0/1:5,6:11:99:151,0,102 0/0:6,0:6:18.04:0,18,191 0/1:3,2:5:28.78:29,0,47 0/0:8,0:8:18.05:0,18,222 0/0:4,0:4:9.02:0,9,97 0/0:8,0:8:24.05:0,24,255 0/0:9,0:9:27.07:0,27,299 0/0:12,0:12:24.06:0,24,270 0/0:5,0:5:15.03:0,15,167 0/0:2,0:2:6.02:0,6,68 0/0:7,0:7:21.05:0,21,223 0/0:11,0:11:33.08:0,33,357 0/0:7,0:7:21.05:0,21,229 0/1:2,4:6:59.66:104,0,60 0/0:23,0:23:63.17:0,63,731 0/0:6,0:6:18.05:0,18,211 0/0:19,0:19:51.13:0,51,580 0/1:5,6:12:99:181,0,148 0/0:2,0:2:6.02:0,6,71 0/0:4,0:4:6.02:0,6,68 0/0:10,0:10:30.07:0,30,323 0/1:7,6:13:99:157,0,202 0/1:3,2:5:24.95:25,0,88 0/0:7,0:7:18.05:0,18,204 0/0:4,0:4:9.02:0,9,99 0/0:1,0:1:3:0,3,29 0/0:4,0:4:9.03:0,9,112 0/0:3,0:3:9.02:0,9,99 0/1:5,3:8:85.74:86,0,144 0/1:3,4:7:84.32:123,0,84 0/0:4,0:4:12.03:0,12,129 0/0:3,0:3:9:0,9,86 0/0:8,0:8:21.06:0,21,241 0/1:3,1:4:24.95:25,0,86 16 681284 . C T 2187.33 . AC=16;AF=0.190;AN=84;BaseQRankSum=-4.078;DP=363;Dels=0.00;FS=1.084;HRun=1;HaplotypeScore=1.7213;InbreedingCoeff=-0.1001;MQ=58.84;MQ0=0;MQRankSum=0.705;QD=14.49;ReadPosRankSum=1.480 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,183 0/0:5,0:5:15.05:0,15,186 0/0:10,0:10:24.07:0,24,289 0/1:8,12:20:99:382,0,250 0/0:23,0:23:63.19:0,63,823 0/0:5,0:5:15.05:0,15,195 0/0:14,0:14:42.13:0,42,534 0/0:8,0:8:24.07:0,24,312 0/1:6,5:11:99:152,0,158 0/1:1,6:7:17.51:194,0,18 0/0:6,0:6:15.05:0,15,189 0/0:9,0:9:21.07:0,21,278 0/0:4,0:4:12.04:0,12,152 1/1:0,8:8:24.08:301,24,0 0/0:10,0:10:30.10:0,30,385 0/0:11,0:11:30.09:0,30,375 0/0:4,0:4:12.04:0,12,152 0/1:2,2:4:43.28:56,0,43 0/1:5,2:7:25.60:26,0,137 0/0:12,0:12:36.11:0,36,447 0/1:7,1:8:8.43:8,0,237 0/1:4,3:7:80.38:80,0,104 0/1:13,12:25:99:373,0,441 0/1:4,3:7:94.28:94,0,140 0/1:9,11:20:99:354,0,269 0/0:13,0:13:39.12:0,39,485 0/1:2,2:4:27.10:27,0,68 0/0:5,0:5:12.04:0,12,146 0/1:4,7:11:99:222,0,112 0/0:14,0:14:36.11:0,36,462 0/0:5,0:5:15.05:0,15,189 0/1:6,2:8:52.89:53,0,173 0/0:4,0:4:12.04:0,12,153 0/0:1,0:1:3.01:0,3,37 0/0:5,0:5:12.04:0,12,152 0/1:2,1:3:29.55:30,0,62 0/0:10,0:10:27.08:0,27,335 0/0:8,0:8:24.07:0,24,298 0/0:4,0:4:12.04:0,12,153 0/0:4,0:4:12.04:0,12,150 0/0:8,0:8:24.08:0,24,307 0/0:5,0:5:15.05:0,15,193 16 684935 . T G 76.72 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.768;DP=670;Dels=0.00;FS=4.242;HRun=0;HaplotypeScore=0.4713;InbreedingCoeff=-0.0136;MQ=59.01;MQ0=0;MQRankSum=0.646;QD=5.90;ReadPosRankSum=-0.930 GT:AD:DP:GQ:PL 0/0:12,0:12:30.09:0,30,376 0/0:15,0:15:45.14:0,45,532 0/0:6,0:6:15.05:0,15,188 0/0:17,0:17:42.13:0,42,527 0/0:27,0:27:66.19:0,66,827 0/0:8,0:8:24.07:0,24,294 0/1:7,6:13:99:123,0,165 0/0:11,0:11:30.10:0,30,382 0/0:12,0:12:36.11:0,36,430 0/0:8,0:8:24.07:0,24,277 0/0:12,0:12:27.09:0,27,350 0/0:7,0:7:21.06:0,21,242 0/0:10,0:10:27.08:0,27,333 0/0:19,0:19:48.15:0,48,598 0/0:50,0:50:99:0,126,1537 0/0:18,0:18:54.16:0,54,636 0/0:14,0:14:39.12:0,39,477 0/0:9,0:9:24.07:0,24,288 0/0:24,0:24:60.15:0,60,712 0/0:24,0:24:66.20:0,66,805 0/0:39,0:40:93.25:0,93,1149 0/0:11,0:11:30.09:0,30,365 0/0:25,0:25:63.19:0,63,784 0/0:13,0:13:30.09:0,30,383 0/0:8,0:8:21.07:0,21,262 0/0:7,0:7:21.06:0,21,244 0/0:14,0:14:39.12:0,39,477 0/0:8,0:8:24.07:0,24,288 0/0:11,0:11:27.08:0,27,332 0/0:11,0:11:24.07:0,24,297 0/0:15,0:15:33.10:0,33,421 0/0:31,0:31:78.22:0,78,960 0/0:15,0:15:36.08:0,36,435 0/0:20,0:20:51.16:0,51,631 0/0:9,0:9:21.04:0,21,253 0/0:24,0:24:57.17:0,57,707 0/0:31,0:31:69.22:0,69,895 0/0:12,0:12:24.05:0,24,308 0/0:16,0:16:42.13:0,42,511 0/0:12,0:12:33.10:0,33,396 0/0:6,0:7:15.05:0,15,191 0/0:14,0:14:39.12:0,39,482 16 686125 . G C 20.77 . AC=4;AF=0.095;AN=42;BaseQRankSum=-1.409;DP=47;Dels=0.00;FS=19.473;HRun=1;HaplotypeScore=0.0350;InbreedingCoeff=0.0988;MQ=57.05;MQ0=0;MQRankSum=-0.658;QD=3.46;ReadPosRankSum=-1.472 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,64 0/0:2,0:2:3.01:0,3,36 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,30 1/1:0,2:2:3.01:32,3,0 ./. 0/0:2,0:2:6.02:0,6,81 ./. 0/0:3,1:4:9.03:0,9,113 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,30 ./. ./. 0/0:2,0:2:3.01:0,3,33 0/0:2,0:2:6.02:0,6,70 ./. ./. ./. 0/0:3,1:4:9.02:0,9,101 ./. 0/0:2,0:2:6.02:0,6,71 ./. 0/1:0,2:2:1.76:27,3,0 0/0:1,0:1:3.01:0,3,39 ./. ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3:0,3,27 0/1:1,1:2:27.42:27,0,30 ./. ./. ./. 0/0:2,1:3:6.02:0,6,72 ./. ./. ./. 0/0:2,0:2:6.02:0,6,69 ./. 0/0:1,0:1:3.01:0,3,38 16 701839 . G A 396.76 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.498;DP=1098;Dels=0.00;FS=1.060;HRun=0;HaplotypeScore=1.0677;InbreedingCoeff=-0.0245;MQ=58.77;MQ0=0;MQRankSum=-0.540;QD=10.44;ReadPosRankSum=-0.096 GT:AD:DP:GQ:PL 0/0:16,0:16:42.10:0,42,470 0/0:21,0:21:60.15:0,60,699 0/0:12,0:12:33.09:0,33,383 0/0:45,0:45:99:0,120,1476 0/0:61,0:61:99:0,162,2002 0/0:48,0:49:99:0,120,1489 0/0:32,0:32:87.22:0,87,1017 0/0:42,0:42:99:0,114,1433 0/0:12,0:12:33.07:0,33,361 0/0:14,0:14:39.10:0,39,442 0/0:13,0:13:39.11:0,39,455 0/0:14,0:14:36.11:0,36,427 0/0:9,0:9:24.07:0,24,282 0/0:20,0:20:54.15:0,54,621 0/0:55,0:56:99:0,135,1594 0/0:30,0:30:84.19:0,84,962 0/0:18,0:18:48.13:0,48,565 0/0:19,0:20:45.11:0,45,534 0/0:30,0:33:72.19:0,72,826 0/0:35,0:37:87.21:0,87,997 0/0:31,0:34:87.18:0,87,962 0/0:31,0:31:81.22:0,81,933 0/0:64,0:64:99:0,162,1985 0/0:34,0:35:87.26:0,87,1075 0/0:43,0:44:99:0,117,1418 0/0:29,0:29:75.20:0,75,923 0/0:10,0:10:27.08:0,27,323 0/0:13,0:13:33.05:0,33,353 0/0:14,0:14:39.07:0,39,433 0/0:25,0:25:69.19:0,69,808 0/0:20,0:20:51.15:0,51,600 0/0:36,0:36:87.16:0,87,982 0/0:29,0:29:81.19:0,81,923 0/1:11,8:19:99:208,0,327 0/1:10,9:19:99:251,0,294 0/0:13,0:13:30.09:0,30,352 0/0:30,0:31:84.24:0,84,995 0/0:18,0:18:48.13:0,48,553 0/0:11,0:11:30.07:0,30,327 0/0:20,0:20:54.12:0,54,641 0/0:12,0:12:27.06:0,27,309 0/0:17,0:17:42.07:0,42,459 16 702524 . G A 515.52 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.516;DP=1825;Dels=0.00;FS=7.428;HRun=0;HaplotypeScore=2.3298;InbreedingCoeff=-0.0120;MQ=58.92;MQ0=0;MQRankSum=-0.326;QD=11.46;ReadPosRankSum=1.404 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,102,1178 0/0:44,0:44:99:0,111,1386 0/0:22,0:22:60.16:0,60,694 0/0:107,0:108:99:0,262,3387 0/0:92,0:92:99:0,244,3102 0/0:61,0:61:99:0,144,1904 0/1:25,20:45:99:562,0,728 0/0:76,0:76:99:0,193,2501 0/0:41,0:41:87.25:0,87,1085 0/0:31,0:31:75.22:0,75,890 0/0:24,0:24:60.15:0,60,690 0/0:28,0:28:72.17:0,72,830 0/0:22,0:22:54.13:0,54,627 0/0:22,0:22:51.15:0,51,611 0/0:111,2:113:99:0,212,3190 0/0:24,0:24:69.18:0,69,797 0/0:29,0:29:81.15:0,81,894 0/0:25,0:25:69.20:0,69,825 0/0:41,0:43:99:0,105,1232 0/0:60,0:60:99:0,156,1879 0/0:35,1:36:99:0,102,1216 0/0:42,1:44:80.71:0,81,1274 0/0:109,0:110:99:0,289,3699 0/0:55,0:55:99:0,141,1804 0/0:70,0:71:99:0,181,2334 0/0:50,0:50:99:0,120,1560 0/0:16,0:16:48.13:0,48,563 0/0:27,0:27:75.21:0,75,887 0/0:30,0:30:81.19:0,81,961 0/0:39,0:39:96.25:0,96,1141 0/0:28,0:28:78.22:0,78,910 0/0:55,2:57:93.62:0,94,1615 0/0:30,0:30:78.20:0,78,941 0/0:27,0:27:75.18:0,75,859 0/0:31,0:31:69.18:0,69,837 0/0:29,0:29:72.21:0,72,891 0/0:54,0:54:99:0,144,1653 0/0:28,0:28:81.23:0,81,954 0/0:29,0:29:75.17:0,75,863 0/0:38,0:38:99:0,105,1246 0/0:22,0:22:57.16:0,57,673 0/0:29,0:29:84.24:0,84,1017 16 707223 . T G 359.74 . AC=16;AF=0.235;AN=68;BaseQRankSum=-2.603;DP=103;Dels=0.00;FS=112.362;HRun=2;HaplotypeScore=0.2024;InbreedingCoeff=0.0867;MQ=55.59;MQ0=0;MQRankSum=-1.448;QD=10.58;ReadPosRankSum=-2.546 GT:AD:DP:GQ:PL ./. ./. 0/0:1,0:1:3.01:0,3,39 0/1:3,5:8:86.23:105,0,86 ./. 0/0:1,0:1:3.01:0,3,41 0/0:2,0:2:3.01:0,3,39 0/0:2,1:3:6.02:0,6,73 0/0:3,1:4:2.92:0,0,27 0/1:2,2:4:59.19:59,0,61 1/1:0,4:4:6.01:65,6,0 0/0:1,0:1:3.01:0,3,36 0/0:2,1:3:6.02:0,6,69 ./. 0/0:5,1:6:15.04:0,15,174 0/0:2,0:2:6.01:0,6,65 1/1:1,1:2:3.01:32,3,0 0/0:2,2:4:3.01:0,3,33 0/0:4,1:5:12.04:0,12,150 0/0:5,0:5:12.03:0,12,130 0/0:2,1:3:6.02:0,6,71 0/1:1,1:2:21.65:22,0,32 0/1:1,1:2:30.96:32,0,31 0/0:2,0:2:3.01:0,3,32 ./. 1/1:0,2:2:6.02:64,6,0 1/1:1,1:2:3.01:32,3,0 0/0:3,2:5:6.02:0,6,75 0/1:2,1:3:24.41:24,0,57 ./. 0/1:2,1:3:23.47:23,0,65 0/0:6,1:7:9.03:0,9,110 0/0:2,1:3:6.02:0,6,76 0/0:2,0:2:6.02:0,6,66 0/0:2,0:2:6.02:0,6,71 1/1:0,2:2:3.01:30,3,0 0/0:1,0:1:3.01:0,3,33 0/0:1,1:2:3.01:0,3,37 ./. 0/0:1,0:1:3.01:0,3,30 ./. 0/0:2,0:2:6.02:0,6,73 16 709001 . C A 23905.54 . AC=27;AF=0.321;AN=84;BaseQRankSum=-20.009;DP=2559;Dels=0.00;FS=0.821;HRun=0;HaplotypeScore=1.7166;InbreedingCoeff=-0.1462;MQ=58.88;MQ0=0;MQRankSum=0.441;QD=15.19;ReadPosRankSum=-5.420 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,117,1432 0/1:18,24:42:99:701,0,449 1/1:1,35:36:99:1195,102,0 0/1:68,79:147:99:2231,0,2091 0/1:85,61:146:99:1656,0,2721 0/1:46,46:92:99:1192,0,1473 1/1:0,69:69:99:2418,202,0 0/0:96,0:97:99:0,277,3555 0/1:26,21:47:99:580,0,820 0/1:14,23:37:99:664,0,410 0/0:34,0:34:93.28:0,93,1161 0/0:42,1:43:83.39:0,83,1427 0/0:37,0:37:99:0,102,1267 0/0:38,0:38:99:0,105,1305 0/0:139,0:139:99:0,388,4689 0/0:33,0:33:99:0,99,1232 0/0:50,2:52:73.96:0,74,1657 0/1:21,14:35:99:321,0,616 0/1:41,37:79:99:970,0,1217 0/1:65,48:114:99:1317,0,1907 0/1:49,31:81:99:782,0,1443 0/1:27,29:56:99:787,0,789 0/1:81,86:167:99:2420,0,2460 0/0:46,0:46:99:0,123,1580 0/0:70,0:70:99:0,205,2628 0/1:38,31:69:99:880,0,1189 0/1:17,15:32:99:423,0,484 0/0:34,1:35:99:0,99,1221 0/1:11,18:29:99:518,0,325 0/1:17,14:31:99:399,0,503 0/1:17,16:33:99:408,0,507 0/0:80,0:80:99:0,205,2522 0/0:69,0:69:99:0,196,2441 0/1:11,16:27:99:432,0,317 0/0:43,1:44:99:0,123,1487 1/1:0,39:39:99:1327,114,0 0/1:41,44:85:99:1225,0,1172 0/1:22,19:41:99:490,0,567 0/0:44,0:44:99:0,111,1387 0/0:48,1:49:99:0,141,1752 0/0:34,0:34:96.27:0,96,1148 0/1:20,20:40:99:569,0,597 16 710071 . C A 18.12 . AC=1;AF=0.013;AN=80;BaseQRankSum=-1.695;DP=171;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.1211;InbreedingCoeff=-0.0851;MQ=58.42;MQ0=0;MQRankSum=-1.147;QD=4.53;ReadPosRankSum=-0.807 GT:AD:DP:GQ:PL 0/0:7,0:7:15.05:0,15,204 0/0:7,0:7:18.06:0,18,238 0/0:3,0:3:6.02:0,6,77 0/0:6,0:6:12.04:0,12,160 0/0:8,0:8:18.06:0,18,252 0/0:2,0:2:6.02:0,6,72 0/0:4,0:4:9.03:0,9,126 0/0:2,0:2:6.02:0,6,81 0/0:2,0:2:6.02:0,6,76 0/1:2,2:4:35.74:63,0,36 0/0:5,0:5:12.04:0,12,160 0/0:2,0:2:6.02:0,6,79 0/0:3,0:3:6.02:0,6,84 0/0:2,0:2:6.02:0,6,69 0/0:15,0:15:39.11:0,39,477 0/0:4,0:4:12.04:0,12,151 0/0:5,0:5:15.05:0,15,186 0/0:1,0:1:3.01:0,3,38 0/0:9,0:9:21.07:0,21,274 0/0:14,0:14:30.10:0,30,408 0/0:4,1:5:12.04:0,12,153 0/0:3,0:3:6.02:0,6,83 0/0:6,0:6:15.05:0,15,201 0/0:1,0:1:3.01:0,3,33 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,41 0/0:1,0:1:3.01:0,3,39 0/0:2,0:3:6.02:0,6,75 ./. 0/0:3,0:3:9.03:0,9,116 ./. 0/0:7,0:7:18.05:0,18,228 0/0:6,0:6:12.04:0,12,156 0/0:2,0:2:6.02:0,6,77 0/0:3,0:3:9.03:0,9,117 0/0:4,0:4:12.04:0,12,151 0/0:5,0:5:12.04:0,12,152 0/0:3,0:3:6.02:0,6,79 0/0:2,0:2:6.02:0,6,69 0/0:3,0:3:9.02:0,9,104 0/0:3,0:3:9.03:0,9,112 0/0:3,0:3:9.03:0,9,114 16 711712 . C T 13707.34 . AC=24;AF=0.286;AN=84;BaseQRankSum=-6.264;DP=2032;Dels=0.00;FS=3.748;HRun=0;HaplotypeScore=1.4968;InbreedingCoeff=-0.1668;MQ=58.84;MQ0=0;MQRankSum=5.507;QD=14.09;ReadPosRankSum=-0.187 GT:AD:DP:GQ:PL 0/0:29,0:29:81.23:0,81,957 0/1:16,15:31:99:416,0,352 1/1:1,24:25:27.68:674,28,0 0/0:129,0:129:99:0,319,4077 0/1:42,39:81:99:1032,0,1197 0/1:37,23:60:99:603,0,1150 1/1:0,58:58:99:1854,153,0 0/0:98,0:98:99:0,262,3308 0/1:19,12:31:99:314,0,520 0/1:10,9:19:99:230,0,298 0/0:32,0:32:81.21:0,81,964 0/0:34,0:34:99:0,99,1180 0/0:26,0:26:75.23:0,75,910 0/0:31,0:31:90.26:0,90,1077 0/0:88,0:88:99:0,217,2601 0/0:37,0:37:99:0,105,1231 0/0:21,0:21:57.15:0,57,656 0/1:12,19:32:99:496,0,324 0/1:28,29:58:99:813,0,685 0/1:38,41:79:99:1063,0,964 0/1:38,39:77:99:1077,0,932 0/1:20,30:50:99:778,0,437 0/0:150,0:151:99:0,397,5206 0/0:64,0:64:99:0,160,2080 0/0:78,0:78:99:0,199,2498 0/1:44,19:63:99:473,0,1281 0/1:12,6:18:99:160,0,333 0/0:21,0:21:54.15:0,54,657 0/1:22,13:35:99:243,0,648 0/1:11,14:25:99:419,0,320 0/1:12,10:22:99:292,0,326 0/0:72,0:73:99:0,168,2048 0/0:35,0:35:99:0,99,1150 0/1:16,18:34:99:523,0,448 0/0:30,0:30:81.23:0,81,992 0/1:12,12:25:99:306,0,348 0/1:33,41:74:99:1007,0,840 0/1:17,13:30:99:289,0,458 0/0:29,0:29:81.22:0,81,921 0/0:23,0:23:63.18:0,63,741 0/0:29,1:30:44.72:0,45,813 0/1:22,23:46:99:645,0,604 16 716273 . T C 6920.16 . AC=9;AF=0.107;AN=84;BaseQRankSum=-0.368;DP=2005;Dels=0.00;FS=20.091;HRun=4;HaplotypeScore=1.7234;InbreedingCoeff=0.1262;MQ=58.73;MQ0=0;MQRankSum=1.176;QD=16.02;ReadPosRankSum=-1.784 GT:AD:DP:GQ:PL 0/0:35,1:36:78.24:0,78,944 0/0:37,0:37:96.28:0,96,1154 0/0:39,0:39:99:0,108,1266 0/0:105,1:106:99:0,274,3278 0/0:85,0:85:99:0,235,2802 0/1:28,35:63:99:931,0,777 1/1:2,55:57:99:1725,113,0 0/0:69,1:70:99:0,181,2171 0/0:31,1:32:90.23:0,90,1050 0/0:29,0:29:81.22:0,81,941 0/0:26,0:26:69.20:0,69,823 0/0:41,0:41:99:0,111,1323 0/0:29,1:30:72.21:0,72,860 0/0:32,1:33:87.24:0,87,1014 0/0:96,3:99:99:0,256,3034 0/0:28,0:28:81.24:0,81,983 0/0:26,2:28:72.20:0,72,847 0/0:39,1:40:76.95:0,77,1225 0/1:31,30:61:99:799,0,823 0/1:27,54:81:99:1476,0,532 0/1:30,28:59:99:630,0,841 0/1:25,24:49:99:575,0,619 0/0:101,0:101:99:0,268,3148 0/0:46,1:47:99:0,114,1418 0/0:56,1:57:99:0,144,1738 0/0:62,0:62:99:0,159,1952 0/0:27,1:28:69.20:0,69,837 0/0:29,0:29:81.23:0,81,955 0/0:20,2:22:54.15:0,54,635 0/0:39,1:40:96.28:0,96,1153 0/0:35,0:35:78.20:0,78,914 0/0:53,0:53:99:0,135,1576 0/0:55,1:56:99:0,153,1768 0/1:13,12:25:99:332,0,298 0/0:29,0:29:72.19:0,72,842 0/1:19,18:37:99:451,0,492 0/0:67,1:69:99:0,178,2127 0/0:38,0:38:99:0,108,1309 0/0:41,1:42:99:0,111,1276 0/0:26,0:26:78.19:0,78,902 0/0:32,3:35:11.29:0,11,844 0/0:45,0:45:99:0,129,1536 16 716287 . C A 6384.31 . AC=8;AF=0.095;AN=84;BaseQRankSum=-14.026;DP=2207;Dels=0.00;FS=5.877;HRun=0;HaplotypeScore=1.6178;InbreedingCoeff=-0.1053;MQ=58.85;MQ0=0;MQRankSum=0.853;QD=13.47;ReadPosRankSum=0.414 GT:AD:DP:GQ:PL 0/0:32,0:32:84.26:0,84,1066 0/0:36,0:36:99:0,102,1278 0/0:42,0:42:99:0,120,1527 0/0:118,0:118:99:0,316,4149 0/0:102,0:102:99:0,292,3847 0/1:29,40:69:99:1041,0,875 0/1:35,19:54:99:507,0,1008 0/0:74,0:74:99:0,205,2695 0/0:34,0:34:99:0,99,1229 0/0:26,0:26:69.22:0,69,871 0/0:27,0:27:78.23:0,78,968 0/0:41,0:41:99:0,120,1492 0/0:31,0:31:84.26:0,84,1060 0/0:36,0:36:99:0,105,1267 0/0:102,1:103:99:0,277,3508 0/0:38,0:38:99:0,111,1385 0/0:27,0:27:78.24:0,78,970 0/0:44,0:44:99:0,126,1565 0/1:30,37:67:99:1072,0,849 0/1:34,54:88:99:1495,0,869 0/1:45,33:78:99:872,0,1365 0/1:29,26:55:99:659,0,850 0/0:114,0:114:99:0,322,4229 0/0:56,0:56:99:0,144,1953 0/0:75,0:75:99:0,211,2774 0/0:73,0:73:99:0,190,2501 0/0:32,0:32:84.24:0,84,1053 0/0:32,0:32:93.29:0,93,1154 0/0:26,0:26:72.21:0,72,897 0/0:45,0:45:99:0,123,1542 0/0:41,0:41:99:0,108,1354 0/0:64,0:64:99:0,172,2219 0/0:52,0:52:99:0,153,1913 0/1:12,11:23:99:321,0,374 0/0:32,0:32:90.27:0,90,1116 0/1:25,15:40:99:417,0,768 0/0:77,0:77:99:0,220,2736 0/0:44,0:44:99:0,120,1523 0/0:43,0:43:99:0,114,1412 0/0:30,0:30:87.26:0,87,1057 0/0:42,0:42:99:0,111,1406 0/0:44,0:44:99:0,129,1599 16 720152 . T C 4267.31 . AC=8;AF=0.095;AN=84;BaseQRankSum=-1.866;DP=1802;Dels=0.00;FS=0.613;HRun=0;HaplotypeScore=1.5490;InbreedingCoeff=-0.1053;MQ=59.04;MQ0=0;MQRankSum=-0.758;QD=11.82;ReadPosRankSum=-1.717 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,108,1276 0/0:17,0:17:51.15:0,51,603 0/0:24,0:24:57.17:0,57,705 0/0:106,0:106:99:0,265,3271 0/0:86,0:86:99:0,238,2876 0/1:44,39:83:99:1022,0,1189 0/1:35,24:59:99:708,0,855 0/0:61,0:61:99:0,156,1893 0/0:23,0:23:63.18:0,63,750 0/0:30,0:30:81.24:0,81,983 0/0:40,0:40:99:0,111,1341 0/0:30,0:30:81.24:0,81,991 0/0:20,0:20:54.16:0,54,657 0/0:34,1:35:53.84:0,54,1034 0/0:97,0:97:99:0,244,2913 0/0:33,0:33:99:0,99,1151 0/0:22,0:22:63.18:0,63,741 0/0:26,0:26:78.21:0,78,909 0/1:29,34:65:99:833,0,751 0/1:24,27:51:99:669,0,601 0/1:12,14:26:99:283,0,332 0/1:16,10:26:99:226,0,446 0/0:105,0:105:99:0,268,3248 0/0:68,0:68:99:0,162,2012 0/0:62,0:62:99:0,159,1961 0/0:45,0:45:99:0,123,1492 0/0:29,0:29:81.24:0,81,972 0/0:38,0:38:99:0,111,1332 0/0:15,0:15:39.10:0,39,459 0/0:28,0:28:81.24:0,81,962 0/0:28,0:28:81.25:0,81,979 0/0:50,0:50:99:0,132,1579 0/0:33,0:33:93.26:0,93,1088 0/1:14,15:29:99:383,0,393 0/0:30,0:30:81.21:0,81,938 0/1:16,6:22:99:144,0,410 0/0:54,0:55:99:0,141,1719 0/0:37,0:37:99:0,102,1239 0/0:28,0:28:78.23:0,78,932 0/0:46,0:46:99:0,117,1412 0/0:22,0:22:60.18:0,60,728 0/0:33,0:33:90.27:0,90,1084 16 720960 . C T 1694.60 . AC=8;AF=0.095;AN=84;BaseQRankSum=2.728;DP=766;Dels=0.00;FS=1.013;HRun=0;HaplotypeScore=2.0402;InbreedingCoeff=-0.1060;MQ=57.55;MQ0=0;MQRankSum=-0.238;QD=11.77;ReadPosRankSum=-0.115 GT:AD:DP:GQ:PL 0/0:5,0:5:15.03:0,15,163 0/0:10,0:10:30.07:0,30,330 0/0:11,0:11:24.07:0,24,297 0/0:37,0:37:96.28:0,96,1175 0/0:48,0:48:99:0,123,1542 0/1:16,11:27:99:246,0,505 0/1:16,12:28:99:330,0,440 0/0:24,0:24:69.18:0,69,834 0/0:13,0:13:36.08:0,36,402 0/0:10,0:10:27.07:0,27,310 0/0:11,0:11:30.08:0,30,340 0/0:15,0:15:45.13:0,45,527 0/0:18,0:18:54.15:0,54,623 0/0:14,0:14:36.10:0,36,415 0/0:41,0:41:99:0,105,1213 0/0:22,0:22:60.17:0,60,711 0/0:9,0:9:24.07:0,24,285 0/0:17,0:17:48.12:0,48,538 0/1:9,13:22:99:400,0,198 0/1:14,8:22:99:233,0,335 0/1:9,11:20:99:287,0,201 0/1:4,4:8:99:114,0,112 0/0:49,0:49:99:0,129,1617 0/0:21,0:21:51.15:0,51,645 0/0:43,0:43:99:0,114,1398 0/0:23,0:23:63.18:0,63,747 0/0:11,0:11:30.08:0,30,346 0/0:7,0:7:21.04:0,21,222 0/0:7,0:7:21.06:0,21,247 0/0:8,0:8:21.06:0,21,245 0/0:13,0:13:39.11:0,39,444 0/0:23,0:23:60.16:0,60,716 0/0:17,0:17:48.13:0,48,558 0/1:2,6:8:40.93:190,0,41 0/0:18,0:18:48.13:0,48,546 0/1:7,2:9:15.92:16,0,179 0/0:18,0:18:51.14:0,51,569 0/0:11,0:11:27.08:0,27,321 0/0:8,0:8:24.07:0,24,286 0/0:9,0:9:24.06:0,24,259 0/0:15,0:15:42.11:0,42,474 0/0:16,0:16:39.10:0,39,440 16 720986 . G A 2311.84 . AC=15;AF=0.179;AN=84;BaseQRankSum=3.260;DP=506;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4049;InbreedingCoeff=-0.0638;MQ=57.89;MQ0=0;MQRankSum=-0.179;QD=14.73;ReadPosRankSum=-0.715 GT:AD:DP:GQ:PL 0/0:2,0:2:6.01:0,6,64 0/1:3,3:6:80.29:92,0,80 1/1:0,6:6:18.03:207,18,0 0/0:26,0:26:72.21:0,72,859 0/1:28,18:46:99:509,0,800 0/0:21,0:21:63.16:0,63,754 0/0:16,0:16:42.12:0,42,496 0/0:15,0:15:42.13:0,42,513 0/1:1,3:4:20.46:101,0,20 0/1:3,6:10:79.65:195,0,80 0/0:11,0:11:27.07:0,27,299 0/0:8,0:8:18.05:0,18,203 0/0:7,0:7:21.06:0,21,254 0/0:7,0:7:18.05:0,18,211 0/0:29,0:29:84.22:0,84,952 0/0:7,0:7:18.05:0,18,207 0/0:10,0:10:27.06:0,27,286 0/1:7,5:12:99:137,0,207 0/0:13,0:13:39.11:0,39,446 0/0:11,0:11:33.07:0,33,361 0/0:18,0:18:51.14:0,51,583 0/0:6,0:6:18.05:0,18,198 0/0:26,0:26:72.22:0,72,890 0/0:16,0:16:42.10:0,42,505 0/0:23,0:23:63.18:0,63,793 0/1:7,9:16:99:288,0,137 0/1:5,3:8:51.99:52,0,147 0/0:8,0:8:24.06:0,24,268 0/1:4,5:9:74.33:154,0,74 0/1:4,3:7:68.90:91,0,69 0/1:4,1:5:22.75:23,0,124 0/0:11,0:11:33.09:0,33,378 0/0:8,0:8:18.04:0,18,200 0/0:9,0:9:24.07:0,24,274 0/0:12,0:12:36.10:0,36,411 0/0:6,0:6:15.04:0,15,165 0/1:4,8:12:97.42:250,0,97 0/1:2,4:6:17.45:128,0,17 0/0:6,0:6:12.03:0,12,132 0/0:7,0:7:21.04:0,21,225 0/0:10,0:10:30.07:0,30,329 0/1:2,8:10:41.32:248,0,41 16 734786 . T C 67.65 . AC=8;AF=0.108;AN=74;BaseQRankSum=-3.288;DP=195;Dels=0.00;FS=25.320;HRun=2;HaplotypeScore=0.1541;InbreedingCoeff=-0.0854;MQ=58.05;MQ0=1;MQRankSum=0.384;QD=1.65;ReadPosRankSum=-3.683 GT:AD:DP:GQ:PL 0/0:2,2:4:6.02:0,6,69 0/0:5,1:6:9.02:0,9,99 0/0:1,0:1:3.01:0,3,38 0/0:9,6:15:2.70:1,0,178 0/0:3,4:7:6:0,6,61 0/0:5,2:7:12.03:0,12,133 ./. 0/1:5,4:9:9.62:10,0,158 0/0:4,1:5:9.02:0,9,102 0/0:5,1:6:15.04:0,15,178 0/1:4,3:7:26.48:26,0,31 ./. 0/1:4,3:7:17.63:18,0,71 0/0:1,0:1:3:0,3,28 0/1:4,3:7:50.58:51,0,120 0/0:5,1:6:12.04:0,12,143 0/0:2,0:2:6.02:0,6,72 1/1:1,2:3:3:27,3,0 0/0:2,1:3:6.01:0,6,65 0/0:4,0:4:12.03:0,12,139 0/0:2,0:2:3.01:0,3,38 0/0:5,2:7:9.01:0,9,97 0/0:9,8:17:12:0,12,119 0/0:5,2:7:12.01:0,12,113 ./. 0/0:2,1:3:3.01:0,3,35 0/0:3,0:3:6:0,6,60 0/0:4,0:4:9.02:0,9,102 0/0:2,2:4:6:0,6,62 0/0:2,1:3:5.38:0,5,43 0/0:1,0:1:3.01:0,3,31 0/0:3,1:4:6.02:0,6,71 0/0:4,0:4:9.03:0,9,108 0/0:3,0:3:8.99:0,9,87 0/1:1,1:2:19.68:20,0,24 0/1:4,2:6:19.51:20,0,105 0/0:6,1:7:12.03:0,12,133 0/0:3,0:3:9.03:0,9,105 0/0:4,0:4:12.02:0,12,128 0/0:1,3:4:3.01:0,3,37 ./. ./. 16 737594 . G A 458 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.770;DP=1390;Dels=0.00;FS=2.097;HRun=0;HaplotypeScore=1.1657;InbreedingCoeff=-0.0121;MQ=59.08;MQ0=0;MQRankSum=2.240;QD=16.96;ReadPosRankSum=-0.487 GT:AD:DP:GQ:PL 0/0:18,0:18:48.12:0,48,547 0/0:22,0:22:54.14:0,54,631 0/0:23,0:23:69.18:0,69,762 0/0:68,0:68:99:0,168,2085 0/0:46,0:46:99:0,126,1556 0/0:39,0:39:96.28:0,96,1191 0/0:29,0:29:66.19:0,66,825 0/0:33,0:33:75.23:0,75,969 0/0:28,0:28:72.17:0,72,828 0/0:31,0:31:75.22:0,75,900 0/0:25,0:25:69.17:0,69,801 0/0:20,0:20:60.13:0,60,679 0/0:23,0:23:60.15:0,60,679 0/0:23,0:23:66.16:0,66,750 0/0:83,0:83:99:0,217,2465 0/0:40,0:40:99:0,102,1160 0/0:32,0:32:87.24:0,87,1008 0/0:21,0:21:60.14:0,60,650 0/0:43,0:43:99:0,108,1222 0/0:55,0:55:99:0,135,1581 0/0:52,0:54:99:0,141,1575 0/0:32,0:32:87.19:0,87,981 0/0:60,0:60:99:0,144,1849 0/0:26,0:26:69.20:0,69,848 0/0:39,0:39:99:0,99,1221 0/0:16,0:16:45.09:0,45,526 0/0:18,0:18:48.12:0,48,546 0/0:33,0:33:84.21:0,84,978 0/0:16,0:16:39.09:0,39,440 0/0:32,0:32:78.20:0,78,905 0/0:20,1:21:54.15:0,54,633 0/0:48,0:48:99:0,120,1411 0/0:33,0:33:87.24:0,87,1018 0/0:30,0:30:78.22:0,78,901 0/0:24,0:24:57.16:0,57,698 0/0:24,0:24:66.17:0,66,728 0/0:55,0:55:99:0,144,1624 0/1:10,17:27:99:504,0,238 0/0:19,0:19:54.10:0,54,569 0/0:21,0:21:51.14:0,51,593 0/0:31,0:31:87.22:0,87,989 0/0:29,0:29:84.20:0,84,937 16 779390 . G C 101.78 . AC=10;AF=0.313;AN=32;BaseQRankSum=-2.946;DP=53;Dels=0.00;FS=19.071;HRun=1;HaplotypeScore=0.1080;InbreedingCoeff=0.1248;MQ=51.39;MQ0=0;MQRankSum=0.542;QD=5.65;ReadPosRankSum=-2.003 GT:AD:DP:GQ:PL 0/0:2,1:3:3.01:0,3,40 ./. 1/1:0,2:2:3.01:32,3,0 ./. ./. 0/0:2,2:4:6.02:0,6,67 ./. ./. ./. ./. ./. 0/1:1,1:2:16.68:23,0,17 ./. ./. 0/1:1,2:3:1.76:29,3,0 0/1:3,1:4:16.67:17,0,59 0/1:1,2:3:15.67:16,0,30 ./. ./. 0/0:4,0:4:9.03:0,9,114 ./. ./. 0/0:3,0:3:9:0,9,93 ./. ./. ./. 0/0:1,1:2:3.01:0,3,37 ./. 0/0:1,0:1:2.99:0,3,23 0/0:1,0:1:3.01:0,3,33 0/0:1,0:1:3.01:0,3,38 ./. ./. ./. ./. 0/0:3,2:5:6.02:0,6,74 ./. 1/1:1,1:2:3.01:33,3,0 ./. ./. ./. 1/1:1,1:2:3.01:32,3,0 16 784313 . G C 15.16 . AC=1;AF=0.012;AN=84;BaseQRankSum=-10.921;DP=1469;Dels=0.00;FS=31.681;HRun=1;HaplotypeScore=1.9565;InbreedingCoeff=-0.0236;MQ=58.92;MQ0=0;MQRankSum=-0.006;QD=0.41;ReadPosRankSum=-3.330 GT:AD:DP:GQ:PL 0/0:27,6:33:51.12:0,51,613 0/0:14,3:17:4.53:0,5,322 0/0:13,3:16:24.03:0,24,260 0/0:79,7:86:99:0,177,2142 0/0:97,4:101:99:0,192,2352 0/0:52,0:52:99:0,114,1417 0/0:33,3:36:69.15:0,69,809 0/0:44,4:48:92.40:0,92,1051 0/0:14,3:17:13.45:0,13,427 0/0:25,2:27:63.13:0,63,718 0/0:19,2:21:48.11:0,48,561 0/0:20,0:20:45.09:0,45,514 0/0:15,3:18:33.07:0,33,390 0/0:33,3:36:80.27:0,80,958 0/0:65,13:79:99:0,138,1591 0/0:25,2:27:34.52:0,35,672 0/0:19,1:21:42.10:0,42,478 0/0:26,1:27:60.13:0,60,687 0/0:32,9:41:7.18:0,7,810 0/0:41,1:42:99:0,99,1173 0/0:33,8:41:2.16:0,2,743 0/0:45,3:48:87.19:0,87,999 0/0:73,6:79:99:0,159,1905 0/0:28,0:28:63.16:0,63,738 0/0:45,2:47:93.26:0,93,1152 0/0:43,3:46:87.25:0,87,1109 0/0:18,8:26:30.05:0,30,351 0/0:24,1:25:42.12:0,42,513 0/0:14,3:17:39.12:0,39,491 0/0:16,3:19:10.45:0,10,391 0/0:14,2:16:36.10:0,36,418 0/0:40,2:42:93.21:0,93,1087 0/0:36,2:38:84.23:0,84,995 0/0:15,0:15:33.05:0,33,345 0/0:17,3:20:39.04:0,39,436 0/0:26,4:30:60.14:0,60,710 0/1:25,12:37:61.09:61,0,597 0/0:25,1:26:51.14:0,51,596 0/0:15,4:20:33.09:0,33,380 0/0:19,6:26:42.10:0,42,479 0/0:22,2:24:42.10:0,42,484 0/0:31,2:34:57.16:0,57,687 16 787243 . G A 1008.01 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.166;DP=4267;DS;Dels=0.00;FS=8.912;HRun=0;HaplotypeScore=2.9385;InbreedingCoeff=-0.0120;MQ=59.00;MQ0=0;MQRankSum=0.740;QD=13.44;ReadPosRankSum=-0.646 GT:AD:DP:GQ:PL 0/0:61,0:62:99:0,171,2000 0/0:81,0:81:99:0,232,2682 0/0:63,0:63:99:0,180,2105 0/0:210,0:210:99:0,566,6911 0/0:182,0:182:99:0,487,5985 0/0:150,0:151:99:0,406,5023 0/0:122,0:122:99:0,325,4012 0/0:137,0:137:99:0,373,4628 0/0:83,0:84:99:0,220,2561 0/0:63,0:64:99:0,168,1982 0/0:75,0:75:99:0,214,2407 0/0:83,0:83:99:0,232,2706 0/0:60,0:60:99:0,168,1929 0/0:83,0:84:99:0,232,2662 0/0:189,0:189:99:0,502,5774 0/0:74,1:76:99:0,202,2327 0/0:86,0:86:99:0,229,2655 0/1:40,35:75:99:1054,0,1045 0/0:101,0:101:99:0,286,3214 0/0:205,0:205:99:0,556,6513 0/0:117,0:117:99:0,325,3806 0/0:103,0:103:99:0,286,3313 0/0:211,0:211:99:0,572,7060 0/0:92,0:92:99:0,256,3145 0/0:148,0:148:99:0,394,4872 0/0:111,0:111:99:0,301,3725 0/0:55,0:55:99:0,138,1614 0/0:88,0:88:99:0,241,2752 0/0:69,0:69:99:0,184,2158 0/0:61,0:61:99:0,180,2057 0/0:64,0:64:99:0,171,1949 0/0:134,0:134:99:0,337,3941 0/0:87,0:87:99:0,241,2748 0/0:80,0:80:99:0,226,2607 0/0:66,0:66:99:0,186,2137 0/0:75,0:75:99:0,199,2337 0/0:136,0:137:99:0,349,4035 0/0:81,0:81:99:0,235,2663 0/0:77,0:77:99:0,208,2422 0/0:81,0:81:99:0,208,2439 0/0:64,0:64:99:0,177,2069 0/0:76,0:76:99:0,217,2499 16 787267 . G A 3764.55 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.334;DP=4068;DS;Dels=0.00;FS=13.314;HRun=0;HaplotypeScore=7.3724;InbreedingCoeff=-0.0244;MQ=58.78;MQ0=0;MQRankSum=0.310;QD=12.55;ReadPosRankSum=0.989 GT:AD:DP:GQ:PL 0/0:71,0:72:99:0,195,2235 0/0:81,0:81:99:0,226,2637 0/0:57,0:58:99:0,159,1885 0/0:183,0:183:99:0,484,6066 0/0:165,0:165:99:0,466,5820 0/0:149,0:149:99:0,403,5013 0/0:102,1:103:99:0,239,3389 0/0:138,1:139:99:0,340,4638 0/0:80,0:80:99:0,220,2602 0/0:53,0:53:99:0,135,1633 0/0:84,0:85:99:0,232,2755 0/0:62,0:62:99:0,174,2063 0/0:56,0:56:99:0,159,1944 0/0:76,0:76:99:0,211,2482 0/0:218,0:218:99:0,572,6769 0/0:73,0:73:99:0,196,2257 0/0:72,0:73:99:0,205,2439 0/0:55,0:55:99:0,156,1822 0/1:54,55:113:99:1360,0,1433 0/1:93,94:187:99:2404,0,2451 0/0:138,2:141:99:0,346,4535 0/0:90,0:91:99:0,244,2873 0/0:216,0:216:99:0,593,7532 0/0:106,0:106:99:0,277,3467 0/0:134,0:134:99:0,352,4410 0/0:97,0:97:99:0,250,3162 0/0:63,0:63:99:0,165,1941 0/0:73,0:73:99:0,208,2440 0/0:60,0:61:99:0,174,2065 0/0:62,1:63:99:0,130,1810 0/0:65,0:65:99:0,177,2088 0/0:123,0:123:99:0,310,3741 0/0:75,0:76:99:0,202,2350 0/0:74,0:74:99:0,214,2532 0/0:61,0:61:99:0,177,2059 0/0:72,0:73:99:0,205,2406 0/0:106,0:107:99:0,274,3288 0/0:77,0:77:99:0,208,2467 0/0:76,0:76:99:0,211,2519 0/0:69,0:69:99:0,196,2286 0/0:67,0:67:99:0,177,2127 0/0:74,0:74:99:0,211,2469 16 815709 . C A 4.05 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.103;DP=789;Dels=0.00;FS=3.006;HRun=0;HaplotypeScore=0.7751;InbreedingCoeff=-0.0156;MQ=59.02;MQ0=0;MQRankSum=-0.468;QD=0.81;ReadPosRankSum=-0.728 GT:AD:DP:GQ:PL 0/0:8,0:8:21.06:0,21,239 0/0:8,0:8:21.06:0,21,257 0/0:9,0:9:27.07:0,27,311 0/0:58,0:58:99:0,141,1793 0/0:50,0:50:99:0,135,1694 0/0:45,0:45:99:0,108,1387 0/0:15,0:15:42.11:0,42,518 0/0:32,0:32:72.23:0,72,939 0/1:3,2:5:48.05:48,0,88 0/0:10,1:11:27.07:0,27,316 0/0:10,0:10:27.06:0,27,286 0/0:6,0:6:15.04:0,15,182 0/0:10,0:10:27.07:0,27,309 0/0:14,0:14:36.09:0,36,401 0/0:36,0:36:90.21:0,90,1049 0/0:20,0:20:51.13:0,51,571 0/0:13,0:13:36.09:0,36,390 0/0:9,0:9:24.05:0,24,261 0/0:19,0:19:54.14:0,54,609 0/0:33,0:33:75.18:0,75,901 0/0:21,0:21:60.18:0,60,715 0/0:14,0:14:42.10:0,42,476 0/0:58,0:58:99:0,150,1910 0/0:30,0:30:75.24:0,75,994 0/0:31,0:31:75.20:0,75,934 0/0:27,0:27:57.18:0,57,732 0/0:9,0:9:27.06:0,27,295 0/0:12,0:12:30.08:0,30,348 0/0:9,0:9:27.08:0,27,310 0/0:10,0:10:27.08:0,27,312 0/0:13,0:13:33.09:0,33,389 0/0:26,0:26:60.16:0,60,707 0/0:18,0:18:48.09:0,48,526 0/0:7,0:7:21.06:0,21,232 0/0:8,0:8:21.06:0,21,245 0/0:9,0:9:27.07:0,27,301 0/0:22,1:23:57.16:0,57,678 0/0:19,0:19:39.11:0,39,470 0/0:10,0:10:30.08:0,30,346 0/0:11,0:11:27.07:0,27,312 0/0:2,0:2:6.02:0,6,64 0/0:11,0:11:33.08:0,33,369 16 815775 . C T 799 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.122;DP=691;Dels=0.00;FS=9.404;HRun=0;HaplotypeScore=0.6672;InbreedingCoeff=-0.0296;MQ=58.79;MQ0=0;MQRankSum=1.071;QD=15.08;ReadPosRankSum=0.537 GT:AD:DP:GQ:PL 0/0:7,0:7:18.03:0,18,193 0/0:8,0:8:18.05:0,18,223 0/0:9,0:9:27.07:0,27,294 0/0:45,0:45:99:0,132,1519 0/0:43,0:43:99:0,120,1393 0/1:16,14:30:99:437,0,395 0/0:19,0:19:42.11:0,42,512 0/1:9,14:23:99:424,0,245 0/0:4,0:4:9.02:0,9,96 0/0:9,0:9:21.06:0,21,245 0/0:8,0:8:21.06:0,21,241 0/0:7,0:7:21.06:0,21,238 0/0:12,0:12:30.07:0,30,331 0/0:10,0:10:30.07:0,30,324 0/0:38,0:39:99:0,99,1124 0/0:15,1:16:9.60:0,10,412 0/0:7,0:7:21.06:0,21,236 0/0:7,0:7:21.05:0,21,232 0/0:20,0:20:54.12:0,54,584 0/0:17,0:18:48.13:0,48,541 0/0:18,0:18:51.14:0,51,576 0/0:19,0:19:54.14:0,54,599 0/0:53,0:53:99:0,141,1673 0/0:28,0:28:69.17:0,69,823 0/0:25,0:25:63.17:0,63,733 0/0:24,0:24:60.16:0,60,710 0/0:5,0:5:15.03:0,15,165 0/0:10,0:10:30.08:0,30,329 0/0:10,0:10:27.08:0,27,323 0/0:7,0:7:18.03:0,18,203 0/0:6,0:6:18.05:0,18,201 0/0:22,0:22:60.16:0,60,686 0/0:17,0:17:48.10:0,48,536 0/0:7,0:7:18.04:0,18,198 0/0:9,0:9:27.06:0,27,287 0/0:13,0:13:36.10:0,36,415 0/0:20,0:20:54.11:0,54,588 0/0:19,0:19:51.14:0,51,570 0/0:17,0:17:45.11:0,45,493 0/0:9,0:9:27.07:0,27,304 0/0:5,0:5:15.04:0,15,160 0/0:7,0:7:18.05:0,18,199 16 820622 . G A 33.89 . AC=4;AF=0.083;AN=48;BaseQRankSum=-1.381;DP=55;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0395;InbreedingCoeff=0.2675;MQ=59.58;MQ0=0;MQRankSum=0.580;QD=11.30;ReadPosRankSum=-0.781 GT:AD:DP:GQ:PL ./. ./. 0/0:2,0:2:3.01:0,3,45 0/0:5,0:5:9.03:0,9,119 0/0:2,0:2:3.01:0,3,45 0/0:4,0:4:9.03:0,9,127 0/0:2,0:2:6.02:0,6,78 0/0:2,0:2:6.02:0,6,77 0/0:1,0:1:3.01:0,3,39 ./. ./. ./. ./. ./. 0/0:4,0:4:9.02:0,9,111 0/0:3,0:3:9.03:0,9,110 ./. ./. ./. 0/0:2,0:2:3.01:0,3,45 0/0:2,0:2:6.02:0,6,71 0/0:2,0:2:6.02:0,6,70 0/0:2,0:2:6.01:0,6,61 0/0:3,0:3:9.03:0,9,117 0/0:2,0:2:6.02:0,6,73 0/1:0,1:1:1.76:36,3,0 0/0:2,0:2:3.01:0,3,35 ./. 1/1:0,1:1:3.01:37,3,0 ./. ./. 0/0:4,0:4:9.03:0,9,119 0/0:3,0:3:9.03:0,9,113 0/0:1,0:1:3.01:0,3,38 0/1:0,1:1:1.76:32,3,0 ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,36 ./. 0/0:2,0:2:3.01:0,3,45 16 822967 . C T 385.01 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.029;DP=2643;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.3390;InbreedingCoeff=-0.0120;MQ=59.05;MQ0=0;MQRankSum=0.389;QD=12.42;ReadPosRankSum=-0.370 GT:AD:DP:GQ:PL 0/0:36,0:36:87.26:0,87,1061 0/0:44,0:44:99:0,111,1333 0/0:36,0:36:99:0,99,1230 0/0:197,1:198:99:0,484,6694 0/0:151,0:151:99:0,412,5342 0/0:134,0:134:99:0,334,4345 0/0:105,0:106:99:0,250,3306 0/0:121,0:121:99:0,340,4318 0/0:42,0:42:99:0,105,1296 0/0:38,0:38:99:0,102,1248 0/0:29,0:29:81.21:0,81,947 0/0:22,0:22:51.12:0,51,612 0/0:33,0:33:90.24:0,90,1075 0/0:42,0:42:99:0,111,1319 0/0:120,0:121:99:0,304,3578 0/0:44,0:44:99:0,120,1447 0/0:44,0:44:99:0,108,1347 0/0:29,0:29:75.20:0,75,898 0/0:67,0:67:99:0,180,2104 0/0:88,0:88:99:0,217,2692 0/0:63,0:63:99:0,172,2062 0/0:49,0:50:99:0,129,1544 0/0:149,0:150:99:0,406,5240 0/0:88,0:88:99:0,223,2919 0/0:131,0:132:99:0,331,4232 0/0:78,0:78:99:0,205,2598 0/0:21,0:21:51.15:0,51,619 0/0:42,0:42:99:0,111,1350 0/0:28,1:29:68.56:0,69,809 0/0:36,0:36:99:0,99,1225 0/0:33,0:33:93.27:0,93,1138 0/0:64,0:64:99:0,162,1962 0/0:53,0:54:99:0,138,1655 0/0:54,0:54:99:0,141,1695 0/0:39,0:39:99:0,102,1238 0/0:35,0:35:93.28:0,93,1135 0/0:81,0:82:99:0,211,2505 0/0:30,0:30:87.27:0,87,1072 0/0:40,0:40:99:0,114,1376 0/0:39,0:39:99:0,99,1207 0/0:28,0:28:72.21:0,72,881 0/1:15,16:31:99:431,0,365 16 825255 . G A 426.90 . AC=6;AF=0.071;AN=84;BaseQRankSum=1.292;DP=311;Dels=0.00;FS=0.880;HRun=0;HaplotypeScore=0.4399;InbreedingCoeff=-0.1077;MQ=58.48;MQ0=0;MQRankSum=0.949;QD=10.67;ReadPosRankSum=1.759 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,71 0/0:7,0:7:18.05:0,18,202 0/1:4,2:6:23.55:24,0,110 0/0:17,0:18:39.09:0,39,467 0/0:21,0:21:54.13:0,54,661 0/0:15,0:16:39.10:0,39,478 0/1:2,7:11:21.17:199,0,21 0/0:13,0:13:30.05:0,30,357 0/1:5,4:9:84.69:96,0,85 0/0:5,0:5:15.03:0,15,168 0/1:1,1:2:30.96:31,0,33 0/0:4,0:4:12.04:0,12,145 0/0:1,0:1:3.01:0,3,30 0/0:5,0:5:12.04:0,12,143 0/0:18,0:18:48.13:0,48,566 0/0:10,0:10:27.08:0,27,312 0/0:6,0:6:18.03:0,18,186 0/0:6,0:6:15.05:0,15,190 0/0:6,0:6:18.04:0,18,195 0/0:2,0:2:6.02:0,6,69 0/0:6,0:6:18.06:0,18,220 0/0:8,0:8:18.05:0,18,226 0/0:22,0:22:63.18:0,63,790 0/0:9,0:9:24.06:0,24,285 0/0:6,0:6:15.04:0,15,184 0/0:7,0:7:18.05:0,18,215 0/0:3,0:3:6.02:0,6,64 0/0:6,0:6:18.04:0,18,201 0/0:5,0:5:15.04:0,15,170 0/0:3,0:3:6.02:0,6,77 0/0:5,0:5:9.03:0,9,116 0/0:14,0:14:30.09:0,30,373 0/0:5,0:5:15.04:0,15,161 0/0:5,0:5:15.01:0,15,157 0/0:3,0:3:6.01:0,6,58 0/0:7,0:7:15.04:0,15,181 0/1:3,6:9:52.91:154,0,53 0/1:2,1:3:27.10:27,0,58 0/0:5,0:5:15.02:0,15,150 0/0:6,0:6:18.03:0,18,180 0/0:2,0:2:3.01:0,3,32 0/0:4,0:4:12.03:0,12,135 16 837402 . C T 28.12 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.332;DP=307;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1656;InbreedingCoeff=0.4143;MQ=58.52;MQ0=0;MQRankSum=0.795;QD=5.62;ReadPosRankSum=0.218 GT:AD:DP:GQ:PL 0/0:6,0:6:18.05:0,18,200 0/0:4,0:4:12.03:0,12,136 0/0:7,0:7:21.06:0,21,246 0/0:11,0:11:33.09:0,33,386 0/0:11,0:11:27.09:0,27,352 0/0:6,0:6:15.05:0,15,189 0/0:5,0:5:15.04:0,15,172 0/0:9,0:9:27.08:0,27,322 0/0:5,0:5:15.04:0,15,169 0/0:4,0:4:9.03:0,9,118 0/0:2,0:2:6.02:0,6,76 0/0:3,0:3:9.03:0,9,111 0/0:5,0:5:15.02:0,15,153 0/0:9,0:9:24.07:0,24,268 0/0:24,0:24:69.16:0,69,777 0/0:9,0:9:27.05:0,27,290 0/0:4,0:4:12.04:0,12,140 0/0:8,0:8:15.04:0,15,190 0/0:11,0:11:30.06:0,30,355 0/0:11,0:11:33.08:0,33,370 0/0:11,0:11:27.08:0,27,318 0/1:1,4:5:0.97:80,6,0 0/0:12,0:12:33.08:0,33,387 0/0:2,0:2:6:0,6,57 0/0:6,0:6:12.04:0,12,164 0/0:1,0:1:3.01:0,3,38 0/0:9,0:9:27.07:0,27,301 0/0:6,0:6:12.04:0,12,151 0/0:7,0:7:15.05:0,15,181 0/0:8,0:8:24.05:0,24,268 0/0:4,0:4:12.03:0,12,136 0/0:8,0:8:18.04:0,18,207 0/0:9,0:9:27.07:0,27,296 0/0:4,0:4:12.04:0,12,140 0/0:8,0:8:24.07:0,24,286 0/0:10,0:10:27.08:0,27,317 0/0:12,0:12:27.07:0,27,325 0/0:6,0:6:15.04:0,15,176 0/0:7,0:7:18.05:0,18,203 0/0:11,0:11:27.08:0,27,330 0/0:5,0:5:15.03:0,15,154 0/0:2,0:2:6.02:0,6,64 16 839035 . G C 13.57 . AC=6;AF=0.088;AN=68;BaseQRankSum=-3.371;DP=119;Dels=0.00;FS=25.206;HRun=4;HaplotypeScore=0.0699;InbreedingCoeff=-0.1085;MQ=58.03;MQ0=0;MQRankSum=1.085;QD=0.80;ReadPosRankSum=-4.294 GT:AD:DP:GQ:PL 0/0:2,0:2:3.01:0,3,33 0/0:3,0:3:6.01:0,6,61 0/0:1,0:1:2.99:0,3,24 0/0:4,2:6:12.03:0,12,135 0/1:3,2:5:15.64:16,0,82 0/0:3,1:4:9.03:0,9,106 0/0:3,3:6:9.03:0,9,114 1/1:0,2:2:2.98:22,3,0 0/0:1,0:1:3.01:0,3,32 0/0:1,0:1:3.01:0,3,34 0/0:1,0:1:3.01:0,3,39 0/1:2,1:3:17.66:18,0,51 0/0:1,1:2:3:0,3,29 0/0:1,0:1:3:0,3,26 0/0:9,1:10:27.06:0,27,279 0/1:1,1:2:25.54:26,0,26 0/0:1,1:2:3.01:0,3,36 ./. 0/0:2,0:2:3.01:0,3,32 0/0:7,1:8:21.06:0,21,238 0/0:1,1:2:3.01:0,3,31 0/0:3,0:3:6:0,6,55 0/0:9,2:11:1.89:3,0,211 ./. 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,38 0/0:2,2:4:3.89:0,4,33 ./. 0/0:2,0:2:6.01:0,6,63 ./. ./. 0/0:6,0:6:12.01:0,12,120 0/0:2,1:3:6:0,6,54 0/0:1,1:2:3.01:0,3,32 ./. 0/0:4,1:5:9.02:0,9,97 0/0:2,1:3:6:0,6,58 0/1:4,1:5:16.53:17,0,108 ./. ./. 0/0:1,0:1:3.01:0,3,32 0/0:3,1:4:3.01:0,3,33 16 839084 . A C 35.54 . AC=3;AF=0.044;AN=68;BaseQRankSum=-2.681;DP=98;Dels=0.00;FS=5.700;HRun=1;HaplotypeScore=0.2749;InbreedingCoeff=-0.0053;MQ=57.01;MQ0=0;MQRankSum=0.087;QD=5.92;ReadPosRankSum=0.823 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,72 0/0:3,0:3:3.01:0,3,45 0/0:1,0:1:3.01:0,3,35 0/0:4,0:4:12.03:0,12,137 0/0:7,0:7:18.05:0,18,213 0/0:1,0:1:3.01:0,3,39 0/0:5,0:5:12.04:0,12,156 0/0:1,0:1:3.01:0,3,37 ./. ./. 0/0:1,0:1:3.01:0,3,39 0/0:4,0:4:12.04:0,12,145 0/0:2,0:2:3.01:0,3,37 0/0:1,0:1:3:0,3,28 0/0:6,0:6:15.04:0,15,180 0/1:1,2:3:26.25:45,0,26 ./. ./. 0/0:2,0:2:3.01:0,3,39 0/0:8,0:8:21.07:0,21,263 0/0:4,0:4:12.04:0,12,156 0/0:1,0:1:3.01:0,3,39 0/0:6,0:6:15.05:0,15,182 ./. ./. 0/1:0,1:1:1.76:35,3,0 0/0:5,0:5:15.05:0,15,181 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:6.02:0,6,73 ./. 0/0:2,0:2:6.02:0,6,73 0/0:5,0:5:15.04:0,15,175 0/0:2,0:2:6.02:0,6,75 0/0:1,0:1:3.01:0,3,38 ./. 0/0:3,0:3:9.03:0,9,112 0/0:2,0:2:6.02:0,6,76 0/0:1,0:1:3.01:0,3,36 0/0:3,0:3:9.03:0,9,112 0/0:1,0:1:3.01:0,3,33 0/1:1,1:2:26.48:26,0,30 0/0:3,0:3:9.03:0,9,104 16 839087 . T G 105.61 . AC=9;AF=0.145;AN=62;BaseQRankSum=-5.408;DP=92;Dels=0.00;FS=83.238;HRun=2;HaplotypeScore=0.3268;InbreedingCoeff=-0.1445;MQ=57.75;MQ0=0;MQRankSum=0.912;QD=4.06;ReadPosRankSum=-3.481 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,73 0/0:1,1:2:3.01:0,3,32 0/0:1,0:1:3.01:0,3,36 0/0:3,0:3:9.03:0,9,109 0/0:4,2:6:12.03:0,12,140 0/0:1,0:1:3.01:0,3,38 0/0:4,0:4:12.04:0,12,150 0/0:1,0:1:3.01:0,3,34 ./. ./. ./. 0/1:3,1:4:15.63:16,0,92 1/1:0,1:1:3.01:36,3,0 0/1:1,0:1:1.76:0,3,26 0/0:3,2:5:4.83:0,5,42 0/0:4,0:4:12.03:0,12,141 ./. 0/0:1,0:1:3.01:0,3,32 0/0:1,1:2:3.01:0,3,37 0/1:3,5:8:50.76:51,0,59 0/1:1,2:3:25.53:26,0,30 0/0:1,0:1:3.01:0,3,36 0/0:4,2:6:9.03:0,9,106 ./. ./. 0/0:1,0:1:3.01:0,3,35 0/0:5,0:5:15.04:0,15,173 ./. 0/1:2,1:3:26.48:26,0,30 ./. 0/0:1,1:2:3.01:0,3,34 0/0:2,3:5:6.02:0,6,64 0/0:2,1:3:6.01:0,6,65 ./. ./. 0/1:1,2:3:21.65:22,0,31 0/0:2,0:2:6.02:0,6,76 0/0:1,0:1:3.01:0,3,36 0/0:2,1:3:6.02:0,6,73 ./. 0/0:2,0:2:3.01:0,3,37 0/1:1,2:3:25.53:26,0,31 16 840569 . C T 1110.13 . AC=7;AF=0.083;AN=84;BaseQRankSum=-2.595;DP=504;Dels=0.00;FS=2.146;HRun=1;HaplotypeScore=0.5404;InbreedingCoeff=0.1996;MQ=57.93;MQ0=0;MQRankSum=0.689;QD=17.08;ReadPosRankSum=-0.891 GT:AD:DP:GQ:PL 0/0:18,0:18:48.14:0,48,571 0/1:5,4:9:99:114,0,155 0/1:7,8:15:99:246,0,218 0/1:7,6:13:99:155,0,237 0/1:3,8:11:91.65:272,0,92 0/0:9,0:9:27.09:0,27,351 0/0:6,0:6:18.06:0,18,234 0/0:12,0:12:36.11:0,36,452 0/0:6,0:7:18.05:0,18,217 0/0:8,0:8:21.07:0,21,270 0/0:17,0:17:51.13:0,51,615 0/0:13,0:13:36.12:0,36,467 0/0:7,0:7:21.07:0,21,268 0/0:9,0:9:24.08:0,24,304 0/0:26,1:27:56.55:0,57,904 0/0:10,0:10:30.08:0,30,367 0/0:2,0:2:6.02:0,6,76 0/0:8,0:8:21.06:0,21,255 0/0:21,0:21:63.20:0,63,796 0/0:22,0:23:60.18:0,60,753 0/0:17,0:17:48.11:0,48,567 0/0:14,0:14:39.12:0,39,484 0/0:22,0:22:66.21:0,66,880 0/0:8,0:8:21.06:0,21,265 0/0:12,0:12:36.11:0,36,461 0/0:5,0:5:15.05:0,15,192 0/0:10,0:10:27.08:0,27,335 0/0:6,0:6:18.06:0,18,224 0/0:8,0:8:21.07:0,21,261 1/1:0,7:7:21.06:255,21,0 0/0:16,0:16:39.12:0,39,500 0/0:24,0:24:60.19:0,60,761 0/1:3,7:10:72.60:186,0,73 0/0:11,0:11:30.10:0,30,384 0/0:8,0:8:24.07:0,24,282 0/0:7,0:7:18.06:0,18,228 0/0:16,0:17:45.14:0,45,566 0/0:6,0:6:18.06:0,18,219 0/0:18,0:18:45.14:0,45,559 0/0:8,0:8:24.07:0,24,294 0/0:12,0:12:30.09:0,30,376 0/0:13,0:13:36.11:0,36,452 16 840599 . C T 260.97 . AC=3;AF=0.036;AN=84;BaseQRankSum=-3.082;DP=558;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3691;InbreedingCoeff=-0.0388;MQ=58.24;MQ0=0;MQRankSum=1.658;QD=8.16;ReadPosRankSum=-1.087 GT:AD:DP:GQ:PL 0/0:13,0:13:30.09:0,30,371 0/0:13,0:13:33.10:0,33,402 0/1:7,5:12:99:144,0,176 0/0:9,0:9:27.08:0,27,340 0/0:13,0:13:39.12:0,39,508 0/0:7,0:7:15.05:0,15,191 0/0:6,0:6:18.05:0,18,229 0/0:13,0:13:36.08:0,36,446 0/1:6,2:8:48.50:49,0,160 0/0:7,0:7:21.07:0,21,266 0/1:7,5:12:99:144,0,195 0/0:8,0:9:24.07:0,24,296 0/0:12,0:12:36.11:0,36,449 0/0:12,0:12:33.11:0,33,419 0/0:51,0:51:99:0,147,1802 0/0:10,0:10:30.10:0,30,380 0/0:5,0:5:15.05:0,15,190 0/0:9,0:9:27.05:0,27,315 0/0:26,0:26:72.22:0,72,899 0/0:18,0:18:54.16:0,54,658 0/0:26,0:26:66.16:0,66,764 0/0:17,0:17:48.15:0,48,600 0/0:21,0:21:60.18:0,60,774 0/0:12,0:12:36.12:0,36,473 0/0:20,0:20:57.18:0,57,737 0/0:8,0:8:24.06:0,24,303 0/0:8,0:8:24.07:0,24,282 0/0:11,0:11:27.08:0,27,329 0/0:6,0:6:18.05:0,18,220 0/0:9,0:9:27.05:0,27,305 0/0:12,0:12:36.10:0,36,433 0/0:24,0:24:57.16:0,57,727 0/0:12,0:12:36.11:0,36,444 0/0:10,0:10:30.09:0,30,360 0/0:11,0:11:33.08:0,33,382 0/0:10,0:10:27.05:0,27,305 0/0:24,0:24:69.20:0,69,835 0/0:11,0:11:33.10:0,33,399 0/0:8,0:8:24.07:0,24,287 0/0:9,0:9:27.06:0,27,312 0/0:10,0:10:27.07:0,27,322 0/0:14,0:14:42.13:0,42,520 16 840636 . C G 69.97 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.758;DP=771;Dels=0.00;FS=4.677;HRun=0;HaplotypeScore=0.6609;InbreedingCoeff=-0.0125;MQ=57.97;MQ0=0;MQRankSum=0.388;QD=5.83;ReadPosRankSum=0.602 GT:AD:DP:GQ:PL 0/0:20,0:20:54.15:0,54,657 0/0:14,0:14:30.10:0,30,382 0/0:13,0:13:36.11:0,36,444 0/0:22,0:22:54.17:0,54,715 0/0:26,0:26:63.20:0,63,853 0/0:15,0:15:42.14:0,42,553 0/0:8,0:8:21.07:0,21,295 0/0:16,0:16:45.15:0,45,598 0/0:12,0:12:33.10:0,33,416 0/0:7,0:7:21.07:0,21,269 0/0:14,0:14:30.09:0,30,381 0/0:13,0:13:36.11:0,36,438 0/0:16,0:16:48.15:0,48,609 0/0:20,0:20:51.14:0,51,628 0/0:70,0:70:99:0,156,1973 0/0:13,0:13:33.10:0,33,411 0/0:15,0:15:45.14:0,45,564 0/0:8,0:8:24.08:0,24,301 0/0:34,0:34:81.23:0,81,998 0/0:30,0:30:78.25:0,78,997 0/0:27,0:27:60.19:0,60,760 0/0:19,0:19:54.15:0,54,664 0/0:25,0:25:63.21:0,63,866 0/0:15,0:15:39.12:0,39,498 0/0:18,0:18:39.13:0,39,529 0/0:12,0:12:33.11:0,33,455 0/0:12,0:12:36.11:0,36,447 0/0:17,0:17:39.11:0,39,482 0/0:7,0:7:21.06:0,21,254 0/0:14,0:14:39.08:0,39,445 0/0:17,0:17:39.12:0,39,479 0/0:26,1:27:69.20:0,69,845 0/0:26,0:26:69.18:0,69,834 0/0:10,0:10:27.05:0,27,314 0/0:15,0:15:39.10:0,39,475 0/0:15,0:15:33.10:0,33,413 0/0:39,0:39:87.27:0,87,1100 0/0:18,0:18:39.13:0,39,522 0/0:11,0:11:30.07:0,30,356 0/0:9,0:9:24.08:0,24,304 0/1:7,5:12:99:116,0,221 0/0:20,0:20:54.17:0,54,680 16 841874 . G C 110.32 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.840;DP=552;Dels=0.00;FS=1.742;HRun=5;HaplotypeScore=0.6408;InbreedingCoeff=-0.0302;MQ=59.24;MQ0=0;MQRankSum=1.051;QD=5.81;ReadPosRankSum=0.313 GT:AD:DP:GQ:PL 0/0:3,0:3:9.02:0,9,103 0/0:6,0:6:15.04:0,15,179 0/0:7,0:7:18.03:0,18,199 0/0:32,0:32:81.24:0,81,1038 0/0:32,0:32:81.25:0,81,1044 0/0:17,0:17:42.12:0,42,533 0/0:10,0:10:30.09:0,30,377 0/0:16,0:16:39.12:0,39,492 0/0:21,0:21:63.15:0,63,700 0/0:4,0:4:12.03:0,12,136 0/0:13,0:13:36.10:0,36,398 0/0:5,0:5:15.04:0,15,175 0/0:9,0:9:27.03:0,27,296 0/0:12,0:12:33.10:0,33,389 0/0:40,0:40:99:0,102,1204 0/0:12,0:12:36.10:0,36,408 0/0:12,0:12:33.09:0,33,381 0/0:5,0:5:12.03:0,12,143 0/0:19,0:19:54.13:0,54,589 0/0:16,0:16:45.13:0,45,531 0/0:17,0:17:51.13:0,51,560 0/0:13,0:13:36.09:0,36,392 0/0:27,0:27:60.19:0,60,772 0/0:9,0:9:24.04:0,24,266 0/0:16,0:16:39.12:0,39,491 0/0:11,0:11:27.09:0,27,354 0/0:8,0:8:24.07:0,24,266 0/0:12,0:12:36.10:0,36,407 0/0:14,0:14:36.10:0,36,425 0/0:12,0:12:30.08:0,30,354 0/0:5,0:5:15.02:0,15,155 0/0:16,0:16:42.08:0,42,481 0/0:16,0:16:36.11:0,36,459 0/0:8,0:8:24.06:0,24,266 0/0:9,0:9:27.08:0,27,309 0/0:6,0:6:18.05:0,18,217 0/0:22,0:22:51.15:0,51,634 0/0:4,0:4:12.03:0,12,136 0/0:12,0:12:30.08:0,30,352 0/1:10,2:12:44.80:45,0,274 0/0:5,0:5:15.03:0,15,163 0/1:3,4:7:44.07:128,0,44 16 842450 . C T 550.58 . AC=4;AF=0.048;AN=84;BaseQRankSum=1.178;DP=331;Dels=0.00;FS=0.844;HRun=0;HaplotypeScore=0.3226;InbreedingCoeff=-0.0698;MQ=58.22;MQ0=0;MQRankSum=0.495;QD=16.68;ReadPosRankSum=-0.121 GT:AD:DP:GQ:PL 0/0:10,0:10:27.07:0,27,306 0/0:6,0:6:18.05:0,18,200 0/0:3,0:3:9.03:0,9,113 0/0:13,0:13:33.08:0,33,412 0/0:10,0:10:30.09:0,30,377 0/0:8,0:8:24.07:0,24,300 0/0:7,0:7:21.06:0,21,250 0/0:5,0:5:15.05:0,15,189 0/0:1,0:1:3.01:0,3,30 0/0:3,0:3:9.02:0,9,99 0/0:2,0:2:6.02:0,6,69 0/0:7,0:7:21.06:0,21,244 0/0:5,0:5:15.04:0,15,161 0/0:10,0:10:24.07:0,24,292 0/0:25,0:25:66.18:0,66,758 0/1:2,5:7:54.18:126,0,54 0/0:3,0:3:9.02:0,9,100 0/0:4,0:4:12.03:0,12,134 0/0:10,0:11:24.07:0,24,282 0/0:12,0:12:33.08:0,33,380 0/0:9,0:9:27.07:0,27,301 0/0:7,0:7:21.06:0,21,242 0/0:14,0:14:42.13:0,42,525 0/0:3,0:3:9.03:0,9,120 0/0:10,0:10:30.10:0,30,392 0/1:3,3:6:56.34:91,0,56 0/0:9,0:9:21.06:0,21,266 0/0:6,0:6:18.02:0,18,191 0/0:6,0:6:18.04:0,18,190 0/0:5,0:5:12.04:0,12,142 0/0:12,0:12:30.08:0,30,348 0/0:12,0:12:33.09:0,33,367 0/0:6,0:6:18.04:0,18,197 0/0:3,0:3:9.02:0,9,104 0/1:3,6:9:77.77:157,0,78 0/0:5,0:5:15.04:0,15,158 0/0:12,1:13:30.07:0,30,337 0/0:4,0:4:12.03:0,12,140 0/0:6,0:6:15.04:0,15,166 0/0:16,0:16:45.12:0,45,504 0/1:2,9:11:33.01:262,0,33 0/0:7,0:7:18.05:0,18,211 16 843247 . A G 281.33 . AC=22;AF=0.262;AN=84;BaseQRankSum=-11.391;DP=495;Dels=0.00;FS=255.603;HRun=2;HaplotypeScore=0.3921;InbreedingCoeff=-0.3774;MQ=57.69;MQ0=0;MQRankSum=-0.315;QD=1.12;ReadPosRankSum=-8.585 GT:AD:DP:GQ:PL 0/0:7,3:10:17.71:0,18,170 0/0:7,6:13:1.56:4,0,161 0/0:7,1:8:18.06:0,18,223 0/1:13,11:24:3.95:4,0,292 0/1:10,8:19:30.14:30,0,221 0/0:11,4:15:29.76:0,30,337 0/1:9,4:13:4.62:5,0,202 0/1:8,5:13:14.14:14,0,172 0/1:4,5:9:16.67:17,0,60 0/1:5,5:10:15.38:15,0,161 0/1:8,3:12:4.58:5,0,234 0/1:7,2:9:7.65:8,0,128 0/0:6,1:7:15.05:0,15,190 0/0:6,1:7:1.56:4,0,169 0/0:21,7:28:5.89:0,6,604 0/0:7,3:10:18.06:0,18,220 0/0:7,1:8:21.05:0,21,245 0/1:4,7:11:41.27:41,0,89 0/0:7,4:12:1.56:4,0,171 0/0:20,6:26:42.11:0,42,504 0/1:10,5:15:27.64:28,0,217 0/1:10,3:13:6.64:7,0,172 0/1:14,13:27:63.34:63,0,387 0/0:6,3:9:12.03:0,12,137 0/0:8,0:8:18.05:0,18,211 0/1:3,8:11:16.64:17,0,86 0/1:5,3:8:10.60:11,0,165 0/1:4,7:11:38.30:38,0,95 0/0:9,4:13:18.04:0,18,205 0/1:2,3:5:20.60:21,0,66 0/0:6,1:7:18.06:0,18,226 0/0:15,3:18:36.10:0,36,421 0/1:4,5:9:14.58:15,0,130 0/1:3,4:7:10.74:11,0,83 0/1:3,2:5:13.66:14,0,101 0/1:3,5:8:45.16:45,0,98 0/0:10,6:16:23.42:0,23,252 0/0:7,4:11:21.05:0,21,242 0/1:4,3:7:13.61:14,0,127 0/1:4,1:5:13.67:14,0,62 0/0:7,4:11:18.06:0,18,227 0/0:6,1:7:11.86:0,12,109 16 846826 . GC G 100.76 . AC=5;AF=0.060;AN=84;BaseQRankSum=-0.807;DP=1721;FS=639.200;HRun=1;HaplotypeScore=104.6445;InbreedingCoeff=-0.0993;MQ=58.18;MQ0=0;MQRankSum=1.425;QD=0.34;ReadPosRankSum=-10.151 GT:AD:DP:GQ:PL 0/0:19,0:19:21.52:0,22,656 0/0:24,0:24:41.81:0,42,541 0/0:29,0:29:19.58:0,20,671 0/0:92,0:92:34.49:0,34,2715 0/0:82,0:82:31.48:0,31,2240 0/0:58,11:67:52.40:0,52,2096 0/1:71,0:70:71.62:72,0,1787 0/0:55,0:54:61.77:0,62,1564 0/0:34,0:34:46.28:0,46,905 0/0:24,0:24:26.23:0,26,660 0/0:25,0:25:0.34:0,0,527 0/0:27,0:27:31.56:0,32,796 0/0:17,0:17:21.06:0,21,329 0/0:19,0:19:36.11:0,36,548 0/0:88,0:88:99:0,144,2705 0/0:38,0:38:55.16:0,55,893 0/0:29,0:29:2.32:2,0,653 0/0:25,0:25:4.12:0,4,554 0/0:54,0:54:80.52:0,81,1602 0/0:60,0:60:73.29:0,73,1530 0/0:50,0:50:45.64:0,46,1237 0/0:44,0:44:17.70:0,18,1009 0/1:106,0:106:50.14:50,0,2619 0/0:46,0:43:44.38:0,44,1283 0/0:68,0:68:69.71:0,70,1688 0/1:48,0:47:22.69:23,0,1157 0/0:15,0:15:8.19:0,8,409 0/0:28,0:28:1.64:0,2,665 0/0:23,0:23:11.20:0,11,473 0/1:26,0:26:13.69:14,0,491 0/0:24,0:24:25.17:0,25,599 0/0:57,0:57:93.63:0,94,1803 0/0:43,0:43:12.43:0,12,1037 0/0:19,0:19:33.10:0,33,497 0/0:26,0:26:59.19:0,59,921 0/0:25,0:25:57.14:0,57,816 0/1:49,0:49:44.29:44,0,1374 0/0:24,0:24:1.35:0,1,477 0/0:30,0:30:16.83:0,17,831 0/0:20,0:20:8.19:0,8,433 0/0:35,0:35:33:0,33,860 0/0:34,0:34:31.16:0,31,665 16 846827 . C G 155.86 . AC=10;AF=0.119;AN=84;BaseQRankSum=-7.681;DP=1721;Dels=0.01;FS=521.601;HRun=3;HaplotypeScore=1.6285;InbreedingCoeff=-0.1531;MQ=58.18;MQ0=0;MQRankSum=-0.039;QD=0.35;ReadPosRankSum=-12.250 GT:AD:DP:GQ:PL 0/0:15,4:19:16.55:0,17,448 0/0:15,9:24:39.08:0,39,414 0/0:16,13:29:9:0,9,443 0/0:69,23:92:73.50:0,74,2155 0/0:56,26:82:23.09:0,23,1672 0/0:54,3:58:99:0,147,1728 0/1:47,24:71:7.37:7,0,1145 0/0:41,14:55:30.57:0,31,1233 0/0:24,10:34:63.16:0,63,694 0/0:17,6:24:21.43:0,21,456 0/1:13,12:25:27.91:28,0,374 0/0:21,6:27:24.54:0,25,606 0/0:8,9:17:21.05:0,21,225 0/0:13,6:19:36.10:0,36,409 0/0:67,19:88:99:0,116,1750 0/0:23,15:38:54.11:0,54,587 0/1:16,13:29:10.90:11,0,435 0/1:15,10:25:11.15:11,0,333 0/0:40,14:54:81.75:0,82,1136 0/0:40,20:60:59.93:0,60,1144 0/0:30,18:50:58.19:0,58,899 0/0:25,18:44:23.06:0,23,671 0/1:68,38:106:23.35:23,0,1944 0/0:31,15:46:53.25:0,53,1028 0/0:44,24:68:63.03:0,63,1271 0/1:32,16:48:74.37:74,0,834 0/0:10,5:15:28.31:0,28,300 0/0:18,10:28:0.78:7,0,451 0/0:12,11:23:6.46:0,6,329 0/1:14,12:26:22.60:23,0,372 0/0:16,8:24:14.44:0,14,409 0/0:42,14:57:99:0,120,1287 0/1:28,15:43:10.42:10,0,754 0/0:11,8:19:33.08:0,33,360 0/0:22,4:26:63.15:0,63,679 0/0:19,6:25:54.11:0,54,558 0/1:33,14:49:54.12:54,0,920 0/1:11,13:24:36.84:37,0,286 0/0:19,11:30:19.87:0,20,496 0/0:11,9:20:3.43:0,3,287 0/0:22,13:35:56.97:0,57,648 0/0:15,19:34:20.42:0,20,409 16 847743 . C T 1915.13 . AC=5;AF=0.060;AN=84;BaseQRankSum=6.633;DP=2415;Dels=0.00;FS=1.640;HRun=0;HaplotypeScore=1.6539;InbreedingCoeff=-0.0633;MQ=59.03;MQ0=1;MQRankSum=-0.341;QD=9.34;ReadPosRankSum=-0.613 GT:AD:DP:GQ:PL 0/0:32,0:32:75.20:0,75,871 0/0:28,0:28:75.19:0,75,831 0/0:28,0:28:75.20:0,75,854 0/0:145,0:145:99:0,340,4270 0/0:124,0:124:99:0,295,3742 0/0:67,0:67:99:0,159,1995 0/0:65,0:65:99:0,144,1793 0/0:74,0:74:99:0,175,2190 0/0:35,0:35:93.24:0,93,1048 0/0:43,2:46:66.51:0,67,1205 0/0:27,0:27:72.18:0,72,815 0/0:31,0:31:81.21:0,81,920 0/0:36,0:36:87.22:0,87,1018 0/0:35,0:35:93.25:0,93,1042 0/0:159,0:159:99:0,361,4318 0/1:21,15:36:99:399,0,524 0/0:46,0:46:99:0,111,1270 0/0:34,0:35:87.23:0,87,982 0/0:88,0:88:99:0,208,2412 0/0:80,0:81:99:0,205,2340 0/0:71,0:71:99:0,168,1929 0/0:60,0:60:99:0,138,1621 0/0:173,0:173:99:0,379,4916 0/0:64,0:64:99:0,150,1886 0/0:97,0:97:99:0,235,2940 0/1:37,30:67:99:710,0,911 0/0:31,0:31:75.19:0,75,869 0/0:32,0:32:81.21:0,81,905 0/1:23,15:38:99:366,0,512 0/0:29,0:29:72.19:0,72,825 0/0:30,0:30:81.21:0,81,912 0/0:93,0:93:99:0,226,2634 0/0:62,0:62:99:0,150,1753 0/0:30,0:30:72.18:0,72,839 0/1:26,9:35:99:197,0,646 0/0:33,0:33:84.22:0,84,963 0/0:88,0:88:99:0,220,2522 0/0:35,0:35:96.24:0,96,1035 0/0:42,1:43:99:0,105,1202 0/0:31,0:31:72.18:0,72,817 0/1:16,13:29:99:339,0,390 0/0:26,0:26:69.17:0,69,777 16 904551 . G C 65.97 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.991;DP=475;Dels=0.00;FS=7.252;HRun=0;HaplotypeScore=0.4467;InbreedingCoeff=-0.0331;MQ=58.69;MQ0=0;MQRankSum=1.031;QD=6.60;ReadPosRankSum=0.498 GT:AD:DP:GQ:PL 0/0:12,0:12:33.09:0,33,398 0/0:8,0:8:15.04:0,15,189 0/0:4,0:4:12.04:0,12,144 0/0:19,0:19:48.15:0,48,632 0/0:15,0:15:39.10:0,39,486 0/0:16,0:16:39.11:0,39,508 0/0:21,0:21:48.16:0,48,650 0/0:18,0:18:42.13:0,42,556 0/0:4,0:4:12.04:0,12,149 0/0:11,0:11:24.06:0,24,300 0/0:3,0:3:9.02:0,9,101 0/0:4,1:5:0.12:16,0,136 0/0:10,0:10:27.09:0,27,347 0/1:5,5:10:99:109,0,153 0/0:24,0:24:57.18:0,57,730 0/0:15,0:15:42.13:0,42,520 0/0:10,0:10:27.07:0,27,323 0/0:8,0:8:18.06:0,18,233 0/0:18,0:18:51.13:0,51,601 0/0:14,0:14:36.11:0,36,459 0/0:15,0:15:45.14:0,45,559 0/0:12,0:12:33.09:0,33,389 0/0:24,0:24:57.19:0,57,779 0/0:9,0:9:24.06:0,24,298 0/0:16,0:16:39.12:0,39,518 0/0:11,0:11:27.09:0,27,375 0/0:5,0:5:15.04:0,15,180 0/0:14,0:14:42.12:0,42,500 0/0:5,0:5:15.04:0,15,181 0/0:9,0:9:24.07:0,24,298 0/0:4,0:4:12.03:0,12,134 0/0:19,0:19:48.12:0,48,596 0/0:15,0:15:39.11:0,39,479 0/0:2,0:2:6.02:0,6,75 0/0:12,0:12:30.08:0,30,370 0/0:11,0:11:30.09:0,30,363 0/0:14,0:14:42.13:0,42,516 0/0:6,0:6:18.06:0,18,226 0/0:6,0:6:18.06:0,18,227 0/0:5,0:5:12.04:0,12,149 0/0:7,0:7:21.05:0,21,246 0/0:8,0:8:21.07:0,21,271 16 920870 . C T 313 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.971;DP=919;Dels=0.00;FS=6.049;HRun=0;HaplotypeScore=0.5293;InbreedingCoeff=-0.0128;MQ=58.51;MQ0=0;MQRankSum=0.997;QD=15.65;ReadPosRankSum=0.391 GT:AD:DP:GQ:PL 0/0:24,0:24:69.15:0,69,738 0/0:16,0:16:48.12:0,48,520 0/0:12,0:12:36.09:0,36,391 0/0:40,0:40:99:0,117,1350 0/0:34,0:34:99:0,99,1177 0/0:17,0:17:45.12:0,45,525 0/0:24,0:24:66.19:0,66,774 0/0:12,0:12:36.09:0,36,408 0/0:24,0:24:60.15:0,60,663 0/0:19,0:19:57.14:0,57,621 0/0:22,0:22:60.14:0,60,642 0/0:18,0:18:51.11:0,51,532 0/0:13,0:13:39.10:0,39,427 0/0:20,0:20:60.15:0,60,647 0/0:42,0:42:99:0,120,1308 0/0:24,0:24:72.15:0,72,761 0/0:23,0:23:69.16:0,69,733 0/0:11,0:11:33.06:0,33,341 0/0:35,0:35:99:0,102,1096 0/0:28,0:28:78.20:0,78,859 0/0:32,0:32:87.19:0,87,925 0/1:8,12:20:99:359,0,203 0/0:25,0:25:75.19:0,75,868 0/0:6,0:6:12.03:0,12,142 0/0:23,0:23:63.15:0,63,725 0/0:16,0:16:48.13:0,48,549 0/0:11,0:11:30.08:0,30,333 0/0:19,0:19:51.13:0,51,547 0/0:17,0:17:45.11:0,45,495 0/0:19,0:19:51.11:0,51,537 0/0:26,0:26:75.19:0,75,820 0/0:30,0:30:87.19:0,87,939 0/0:26,0:26:75.19:0,75,821 0/0:20,0:20:57.13:0,57,609 0/0:16,0:16:45.12:0,45,507 0/0:20,0:20:60.14:0,60,633 0/0:34,0:34:93.23:0,93,1012 0/0:16,0:16:42.10:0,42,462 0/0:22,0:22:60.15:0,60,658 0/0:28,0:28:81.16:0,81,859 0/0:15,0:15:45.10:0,45,471 0/0:19,0:19:57.15:0,57,626 16 921179 . G A 17.39 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.838;DP=401;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3628;InbreedingCoeff=-0.0209;MQ=59.06;MQ0=0;MQRankSum=0.461;QD=1.74;ReadPosRankSum=0.106 GT:AD:DP:GQ:PL 0/0:6,0:6:18.03:0,18,192 0/0:9,0:9:21.05:0,21,246 0/0:7,0:7:21.04:0,21,224 0/0:21,0:21:54.16:0,54,659 0/0:12,0:12:33.06:0,33,365 0/0:8,0:8:18.05:0,18,218 0/0:9,0:9:27.07:0,27,305 0/0:12,0:12:30.07:0,30,341 0/0:10,0:10:27.04:0,27,271 0/0:5,0:5:12.03:0,12,130 0/0:5,0:5:12.03:0,12,136 0/0:5,0:5:12.03:0,12,137 0/0:8,0:8:24.05:0,24,249 0/0:6,0:6:12.03:0,12,128 0/0:23,0:23:66.16:0,66,709 0/0:8,0:8:21.05:0,21,221 0/0:10,0:10:30.07:0,30,327 0/0:10,0:10:30.05:0,30,307 0/0:14,0:14:36.09:0,36,401 0/0:12,0:12:33.09:0,33,379 0/0:24,0:24:72.19:0,72,807 0/1:7,3:10:63.43:63,0,165 0/0:13,0:13:33.07:0,33,394 0/0:10,0:10:24.07:0,24,287 0/0:8,0:8:21.05:0,21,253 0/0:9,0:9:24.06:0,24,272 0/0:9,0:9:21.05:0,21,224 0/0:8,0:8:21.04:0,21,227 0/0:7,0:7:18.05:0,18,212 0/0:2,0:2:6.01:0,6,58 0/0:7,0:7:21.04:0,21,216 0/0:13,0:13:36.10:0,36,411 0/0:9,0:9:24.07:0,24,272 0/0:6,0:6:15.04:0,15,174 0/0:7,0:7:18.03:0,18,195 0/0:5,0:5:15.04:0,15,160 0/0:18,0:18:54.14:0,54,587 0/0:8,0:8:24.05:0,24,262 0/0:8,0:8:24.07:0,24,272 0/0:8,0:8:24.06:0,24,264 0/0:8,0:8:21.06:0,21,249 0/0:4,0:4:12.03:0,12,130 16 921187 . C T 270.26 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.306;DP=465;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.3257;InbreedingCoeff=-0.0290;MQ=58.82;MQ0=0;MQRankSum=-0.104;QD=12.87;ReadPosRankSum=-0.678 GT:AD:DP:GQ:PL 0/0:9,0:9:21.06:0,21,249 0/0:10,1:11:24.07:0,24,302 0/0:9,0:9:27.07:0,27,325 0/0:23,0:23:60.18:0,60,772 0/0:14,0:14:42.13:0,42,532 0/0:11,0:11:30.09:0,30,391 0/0:8,0:8:24.08:0,24,321 0/0:12,0:12:33.09:0,33,403 0/0:9,0:9:27.09:0,27,339 0/0:6,0:6:18.06:0,18,228 0/0:9,0:9:24.07:0,24,292 0/0:4,0:4:12.03:0,12,144 0/0:9,0:9:24.07:0,24,291 0/0:10,0:10:27.08:0,27,327 0/0:26,0:26:69.21:0,69,854 0/0:5,0:5:15.05:0,15,192 0/0:10,0:10:27.07:0,27,311 0/0:13,0:13:36.11:0,36,441 0/0:18,0:18:39.12:0,39,496 0/0:17,0:17:48.14:0,48,567 0/0:25,0:26:72.22:0,72,888 0/0:12,0:12:36.10:0,36,423 0/0:14,0:14:39.11:0,39,484 0/0:12,0:12:27.09:0,27,372 0/0:7,0:7:21.07:0,21,267 0/0:13,0:13:39.10:0,39,478 0/0:9,0:9:21.06:0,21,259 0/0:8,0:8:21.06:0,21,254 0/0:9,0:9:24.07:0,24,285 0/0:4,0:4:12.04:0,12,143 0/0:6,0:6:15.05:0,15,189 0/0:15,0:15:45.13:0,45,544 0/0:13,0:13:39.12:0,39,470 0/0:8,0:8:21.06:0,21,259 0/0:6,0:6:15.05:0,15,193 0/0:7,0:7:21.07:0,21,268 0/0:18,0:18:48.14:0,48,576 0/0:9,0:9:27.07:0,27,319 0/0:11,0:11:30.09:0,30,371 0/1:3,8:11:76.34:252,0,76 0/1:7,3:10:80.38:80,0,196 0/0:4,0:4:12.04:0,12,147 16 929606 . C T 144.83 . AC=1;AF=0.012;AN=82;BaseQRankSum=0.289;DP=607;Dels=0.00;FS=1.669;HRun=0;HaplotypeScore=0.6475;InbreedingCoeff=-0.0139;MQ=58.92;MQ0=0;MQRankSum=0.124;QD=9.05;ReadPosRankSum=1.471 GT:AD:DP:GQ:PL 0/0:11,0:11:33.10:0,33,383 0/0:7,0:7:21.05:0,21,233 0/0:16,0:16:42.10:0,42,469 0/0:17,0:17:45.09:0,45,509 0/0:27,0:27:66.20:0,66,828 0/0:17,0:17:48.14:0,48,574 0/1:8,8:16:99:191,0,169 0/0:11,0:11:30.09:0,30,365 0/0:9,0:9:27.08:0,27,321 0/0:9,0:9:21.06:0,21,245 0/0:15,0:15:42.12:0,42,503 0/0:12,0:12:33.08:0,33,368 0/0:10,0:10:24.05:0,24,273 0/0:11,0:11:30.08:0,30,352 0/0:52,0:54:99:0,132,1557 0/0:17,0:17:42.11:0,42,478 0/0:8,0:8:18.05:0,18,216 0/0:11,0:11:33.09:0,33,382 0/0:23,0:25:57.16:0,57,670 0/0:20,0:21:60.12:0,60,678 0/0:14,0:14:39.10:0,39,452 0/0:20,0:20:54.06:0,54,575 0/0:32,0:32:84.25:0,84,1051 0/0:16,0:16:45.12:0,45,564 0/0:24,0:24:63.18:0,63,765 0/0:14,0:14:39.12:0,39,481 ./. 0/0:12,0:12:33.08:0,33,379 0/0:8,0:8:24.06:0,24,273 0/0:8,0:8:21.06:0,21,255 0/0:10,0:10:24.06:0,24,272 0/0:22,0:22:54.14:0,54,641 0/0:16,0:17:45.11:0,45,492 0/0:7,0:7:21.06:0,21,254 0/0:9,0:9:21.05:0,21,243 0/0:9,0:9:24.06:0,24,273 0/0:15,0:15:42.10:0,42,477 0/0:12,0:12:33.07:0,33,370 0/0:10,0:10:24.08:0,24,297 0/0:10,0:10:24.03:0,24,261 0/0:5,0:5:15.03:0,15,159 0/0:8,0:8:21.06:0,21,250 16 929711 . C T 1022.53 . AC=10;AF=0.119;AN=84;BaseQRankSum=5.589;DP=390;Dels=0.00;FS=3.768;HRun=0;HaplotypeScore=0.3073;InbreedingCoeff=-0.1592;MQ=58.86;MQ0=0;MQRankSum=0.305;QD=10.54;ReadPosRankSum=1.741 GT:AD:DP:GQ:PL 0/0:5,0:5:15.03:0,15,156 0/0:11,0:11:33.06:0,33,353 0/0:7,0:7:18.04:0,18,191 0/0:9,0:9:27.06:0,27,317 0/1:3,8:11:69.88:262,0,70 0/0:5,0:5:15.04:0,15,167 0/0:3,0:3:6.02:0,6,70 0/0:6,0:6:15.04:0,15,175 0/0:12,0:12:30.07:0,30,346 0/0:8,0:8:24.06:0,24,255 0/0:10,0:10:27.05:0,27,283 0/0:9,0:9:27.06:0,27,287 0/0:5,0:5:15.02:0,15,153 0/0:13,0:13:30.06:0,30,331 0/0:40,0:40:99:0,105,1143 0/0:8,0:8:24.06:0,24,263 0/0:7,0:7:21.05:0,21,222 0/0:7,0:7:21.05:0,21,219 0/0:16,0:16:42.10:0,42,459 0/0:14,0:14:39.07:0,39,407 0/1:8,3:11:69.71:70,0,222 0/0:6,0:6:18.04:0,18,188 0/0:20,0:20:51.15:0,51,601 0/0:2,0:2:6.02:0,6,67 0/0:7,1:8:2.26:2,0,178 0/0:6,0:6:18.05:0,18,215 0/1:5,1:6:21.08:21,0,137 0/1:3,5:8:73.43:156,0,73 0/1:2,1:3:24.41:24,0,55 0/1:8,5:13:99:141,0,227 0/0:11,0:11:27.07:0,27,310 0/1:8,4:12:99:103,0,200 0/1:7,8:15:99:152,0,182 0/0:5,0:5:15.04:0,15,165 0/0:3,0:3:6.02:0,6,69 0/0:6,0:6:18.05:0,18,196 0/0:10,0:10:27.06:0,27,299 0/0:8,0:8:21.04:0,21,222 0/1:4,7:11:95.01:208,0,95 0/0:5,0:5:9.02:0,9,102 0/1:6,1:7:15.93:16,0,167 0/0:8,0:8:21.05:0,21,230 16 1260636 . G A 1078.38 . AC=6;AF=0.071;AN=84;BaseQRankSum=-1.080;DP=801;Dels=0.00;FS=1.528;HRun=0;HaplotypeScore=0.5734;InbreedingCoeff=-0.0773;MQ=58.58;MQ0=0;MQRankSum=0.698;QD=12.69;ReadPosRankSum=-0.495 GT:AD:DP:GQ:PL 0/0:12,0:12:33.09:0,33,392 0/0:17,0:17:48.15:0,48,611 0/0:15,0:15:36.10:0,36,445 0/0:35,0:35:93.30:0,93,1227 0/0:23,0:23:63.20:0,63,824 0/0:27,0:27:78.24:0,78,1002 0/0:24,0:24:60.19:0,60,802 0/0:16,0:16:42.13:0,42,541 0/0:13,0:13:36.11:0,36,430 0/0:13,0:13:24.07:0,24,309 0/0:8,0:8:24.07:0,24,291 0/1:2,10:12:41.46:309,0,41 0/1:9,7:16:99:211,0,201 0/1:6,5:11:99:104,0,197 0/0:50,0:50:99:0,129,1565 0/0:7,0:7:21.06:0,21,261 0/0:19,0:19:51.16:0,51,633 0/0:18,0:18:51.15:0,51,612 0/0:34,0:34:78.19:0,78,926 0/0:30,1:32:72.22:0,72,899 0/0:41,0:41:99:0,111,1324 0/0:16,0:16:39.09:0,39,479 0/0:45,0:45:99:0,123,1581 0/0:18,0:18:51.16:0,51,668 0/0:27,0:27:66.22:0,66,896 0/0:17,0:17:42.13:0,42,541 0/0:11,0:11:33.10:0,33,409 0/0:7,0:7:21.06:0,21,239 0/0:13,0:13:36.11:0,36,447 0/0:19,0:19:48.13:0,48,576 0/0:9,0:9:24.08:0,24,304 0/0:20,0:20:57.18:0,57,712 0/0:20,0:20:57.17:0,57,704 0/1:6,3:9:84.15:84,0,135 0/1:14,12:26:99:291,0,404 0/0:21,0:21:54.13:0,54,629 0/0:14,0:14:39.12:0,39,482 0/0:19,0:19:54.16:0,54,639 0/1:5,6:11:99:185,0,148 0/0:13,0:13:33.10:0,33,401 0/0:12,0:12:30.09:0,30,366 0/0:11,0:11:30.09:0,30,358 16 1268013 . G C 531.80 . AC=5;AF=0.060;AN=84;BaseQRankSum=0.272;DP=441;Dels=0.00;FS=7.494;HRun=1;HaplotypeScore=0.1446;InbreedingCoeff=-0.0690;MQ=57.96;MQ0=0;MQRankSum=1.774;QD=13.64;ReadPosRankSum=-0.455 GT:AD:DP:GQ:PL 0/0:3,0:3:9.02:0,9,97 0/0:8,0:8:24.07:0,24,287 0/0:5,0:5:15.04:0,15,180 0/0:7,0:7:18.06:0,18,233 0/0:12,0:12:36.11:0,36,445 0/0:9,0:9:27.06:0,27,315 0/0:14,0:14:30.09:0,30,372 0/0:16,0:17:42.13:0,42,519 0/0:13,0:14:36.07:0,36,412 0/0:9,0:9:27.07:0,27,305 0/0:11,0:11:33.09:0,33,367 0/1:2,4:6:53.76:135,0,54 0/1:2,3:5:53.34:98,0,53 0/0:5,0:5:15.04:0,15,181 0/0:20,0:20:51.14:0,51,590 0/0:12,0:12:33.10:0,33,412 0/0:9,0:9:24.07:0,24,282 0/0:11,0:11:27.08:0,27,330 0/0:20,0:20:54.15:0,54,613 0/0:13,0:14:39.11:0,39,449 0/0:23,0:23:60.17:0,60,710 0/0:14,0:14:33.07:0,33,395 0/0:11,0:11:33.10:0,33,415 0/0:5,0:5:15.05:0,15,196 0/0:8,0:8:24.08:0,24,305 0/0:5,0:5:15.05:0,15,191 0/0:5,0:5:15.04:0,15,179 0/0:5,0:5:15.04:0,15,180 0/0:4,0:4:12.03:0,12,138 0/0:7,0:7:21.05:0,21,240 0/0:9,0:9:24.07:0,24,290 0/0:25,0:25:63.18:0,63,741 0/0:14,0:14:42.11:0,42,482 0/1:6,6:12:99:170,0,158 0/1:2,3:5:49.96:82,0,50 0/0:11,0:11:33.09:0,33,382 0/0:22,0:22:57.16:0,57,679 0/0:9,0:9:24.07:0,24,281 0/1:6,5:11:99:143,0,153 0/0:8,0:8:21.05:0,21,243 0/0:10,0:10:30.07:0,30,328 0/0:7,0:7:21.04:0,21,234 16 1268979 . C T 10.54 . AC=1;AF=0.016;AN=64;BaseQRankSum=-1.118;DP=113;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1132;InbreedingCoeff=-0.1004;MQ=57.96;MQ0=0;MQRankSum=-0.824;QD=1.51;ReadPosRankSum=2.359 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,73 0/0:1,0:1:3.01:0,3,39 0/0:4,0:4:12.04:0,12,145 0/0:1,0:1:3.01:0,3,41 ./. ./. 0/0:1,0:1:3.01:0,3,40 ./. 0/0:1,0:1:3.01:0,3,39 0/0:4,0:4:12.04:0,12,152 0/0:2,0:2:6.02:0,6,69 ./. 0/0:4,0:4:9.03:0,9,115 0/0:3,0:3:6:0,6,60 0/0:12,0:12:30.09:0,30,380 0/0:6,0:6:18.05:0,18,208 0/0:2,0:2:6.02:0,6,75 0/0:3,0:3:9.03:0,9,109 0/0:7,0:7:21.07:0,21,262 0/0:4,0:4:12.04:0,12,147 0/0:4,0:4:12.03:0,12,140 0/0:5,0:5:12.04:0,12,145 ./. ./. ./. ./. ./. 0/0:2,0:2:6.02:0,6,75 0/0:3,0:3:6.02:0,6,78 0/0:3,0:3:6.02:0,6,83 0/0:2,0:2:6.02:0,6,75 0/1:5,2:7:54.20:54,0,146 0/0:4,0:4:12.04:0,12,144 0/0:3,0:3:6.02:0,6,83 0/0:2,0:2:6:0,6,64 0/0:3,0:3:6.02:0,6,78 0/0:5,0:5:12.04:0,12,148 0/0:6,0:6:12.04:0,12,156 0/0:4,0:4:12.04:0,12,145 0/0:1,0:1:3.01:0,3,38 ./. 0/0:2,0:2:6.02:0,6,73 16 1269029 . T C 2846.05 . AC=45;AF=0.726;AN=62;BaseQRankSum=2.833;DP=118;Dels=0.00;FS=6.330;HRun=0;HaplotypeScore=0.1325;InbreedingCoeff=0.1325;MQ=57.11;MQ0=0;MQRankSum=-0.493;QD=27.11;ReadPosRankSum=0.200 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:70,6,0 1/1:0,2:2:6.02:76,6,0 0/1:2,3:5:52.74:100,0,53 1/1:0,1:1:3.01:39,3,0 ./. ./. ./. ./. 1/1:0,1:1:3.01:39,3,0 0/1:3,2:5:61.25:61,0,89 1/1:0,1:1:3.01:39,3,0 ./. 0/0:2,0:2:6.02:0,6,76 0/1:1,2:3:26.23:64,0,26 1/1:0,10:10:27.04:300,27,0 0/1:1,2:3:27.10:67,0,27 1/1:0,2:2:6.02:78,6,0 1/1:0,2:2:6.02:75,6,0 1/1:0,8:8:24.07:291,24,0 1/1:0,5:5:15.05:181,15,0 0/1:1,3:4:27.10:67,0,27 1/1:0,5:5:15.05:179,15,0 ./. ./. ./. ./. 0/1:1,0:1:1.76:0,3,35 ./. 1/1:0,4:4:12.04:150,12,0 1/1:0,5:5:12.04:157,12,0 1/1:0,2:2:5.99:57,6,0 0/0:7,0:7:21.06:0,21,250 0/1:2,3:5:22.32:98,0,22 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.02:0,6,75 1/1:0,6:6:18.05:213,18,0 1/1:0,8:8:24.07:291,24,0 0/1:3,3:7:53.64:95,0,54 0/1:2,1:3:23.47:23,0,62 1/1:0,2:2:6.02:70,6,0 ./. 1/1:0,3:3:9.03:113,9,0 16 1269095 . C T 136.83 . AC=4;AF=0.074;AN=54;BaseQRankSum=1.599;DP=116;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2820;InbreedingCoeff=-0.1383;MQ=58.51;MQ0=0;MQRankSum=0.264;QD=9.77;ReadPosRankSum=1.058 GT:AD:DP:GQ:PL ./. ./. 0/0:4,0:4:9.02:0,9,99 0/0:2,0:2:6.02:0,6,81 ./. ./. ./. ./. ./. 0/0:5,0:5:15.04:0,15,170 0/0:5,0:5:15.05:0,15,185 0/1:1,1:2:30.96:31,0,33 ./. 0/1:2,1:3:27.10:27,0,56 0/0:11,0:11:27.07:0,27,299 0/0:4,0:4:12.03:0,12,128 ./. 0/0:3,0:3:9.02:0,9,97 0/0:6,0:6:18.04:0,18,189 0/0:7,0:7:21.06:0,21,242 0/0:7,0:7:21.05:0,21,225 0/0:5,0:5:9.03:0,9,115 ./. 0/0:1,0:1:3.01:0,3,41 ./. 0/0:1,0:1:3.01:0,3,40 0/0:2,0:2:5.99:0,6,54 0/0:5,0:5:12.03:0,12,145 0/0:4,0:4:12.04:0,12,150 0/0:4,0:4:12.03:0,12,136 ./. 0/0:3,0:3:9.02:0,9,98 0/0:7,0:7:21.05:0,21,238 0/1:2,1:3:28.77:29,0,63 ./. 0/0:1,0:1:3.01:0,3,32 0/0:8,0:8:21.04:0,21,236 0/0:4,0:4:12.03:0,12,130 0/1:2,4:6:53.96:126,0,54 ./. ./. 0/0:2,0:2:3.01:0,3,32 16 1278680 . C G 855.06 . AC=1;AF=0.012;AN=84;BaseQRankSum=5.969;DP=3270;Dels=0.00;FS=2.462;HRun=0;HaplotypeScore=1.3477;InbreedingCoeff=-0.0120;MQ=28.89;MQ0=1398;MQRankSum=-1.346;QD=8.07;ReadPosRankSum=1.769 GT:AD:DP:GQ:PL 0/0:59,1:60:99:0,117,1377 0/0:97,0:97:99:0,114,1404 0/0:65,0:65:99:0,99,1201 0/0:111,0:111:99:0,205,2596 0/0:71,0:71:99:0,99,1254 0/0:62,0:62:99:0,99,1228 0/0:73,0:73:99:0,99,1238 0/0:83,0:83:99:0,141,1753 0/0:72,0:72:90.23:0,90,1105 0/0:63,0:63:90.25:0,90,1100 0/0:56,0:56:87.24:0,87,1050 0/0:72,0:74:99:0,99,1233 0/0:82,0:82:99:0,153,1853 0/0:65,0:65:93.26:0,93,1131 0/0:205,0:206:99:0,280,3388 0/0:52,0:52:87.23:0,87,1035 0/0:68,0:68:99:0,99,1216 0/0:62,0:62:84.23:0,84,1017 0/0:94,0:95:99:0,150,1702 0/0:134,0:134:99:0,174,2100 0/0:80,1:82:87.24:0,87,1046 0/0:74,0:74:99:0,105,1275 0/1:61,45:106:99:901,0,1034 0/0:43,0:43:63.19:0,63,802 0/0:80,0:80:99:0,132,1627 0/0:57,0:57:93.22:0,93,1102 0/0:59,0:59:84.20:0,84,984 0/0:83,0:83:99:0,117,1363 0/0:86,0:86:99:0,117,1387 0/0:52,0:52:66.18:0,66,789 0/0:67,0:67:87.26:0,87,1089 0/0:106,0:106:99:0,99,1288 0/0:68,0:68:87.24:0,87,1061 0/0:74,0:74:99:0,120,1459 0/0:89,0:89:99:0,111,1350 0/0:58,0:58:78.23:0,78,984 0/0:105,0:106:99:0,144,1661 0/0:80,0:80:99:0,126,1487 0/0:54,0:54:99:0,99,1219 0/0:78,0:78:99:0,120,1448 0/0:64,0:65:93.26:0,93,1135 0/0:51,0:51:60.16:0,60,709 16 1278744 . C T 6737.51 . AC=45;AF=0.536;AN=84;BaseQRankSum=-9.337;DP=1621;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3688;InbreedingCoeff=-0.1525;MQ=18.99;MQ0=1006;MQRankSum=-10.883;QD=5.23;ReadPosRankSum=-1.374 GT:AD:DP:GQ:PL 0/1:15,10:25:39.11:39,0,163 0/1:35,9:44:91.63:92,0,299 0/0:35,0:35:54.15:0,54,634 1/1:14,24:38:10.77:428,11,0 1/1:20,23:43:30.08:334,30,0 1/1:10,20:30:5.81:423,6,0 0/1:20,23:43:2.62:206,0,3 1/1:18,18:37:0.39:239,0,0 1/1:18,19:37:18.04:188,18,0 0/1:27,11:38:99:161,0,210 1/1:6,21:27:30.07:320,30,0 0/0:25,7:32:2.67:0,3,360 0/1:22,12:34:90.83:91,0,266 0/1:13,20:33:66.73:201,0,67 0/1:29,63:93:13.88:555,0,14 1/1:13,20:33:3.40:273,3,0 1/1:3,30:33:36.10:400,36,0 0/0:38,0:38:48.15:0,48,592 0/1:21,11:32:99:197,0,242 1/1:29,29:58:39.11:438,39,0 0/1:23,17:40:18.26:178,0,18 0/1:39,11:50:24.75:25,0,394 0/1:40,13:53:99:210,0,535 0/1:27,6:33:12.72:13,0,517 0/0:41,0:41:57.17:0,57,700 0/1:24,6:30:70.23:70,0,201 0/1:26,10:36:99:145,0,218 0/1:27,7:34:88.87:89,0,281 0/0:40,0:40:36.10:0,36,427 0/1:19,18:37:38.18:206,0,38 0/1:20,14:34:2.62:210,0,3 0/0:69,0:69:30.07:0,30,337 0/0:34,4:38:2.84:0,0,310 0/1:13,12:25:99:130,0,146 0/1:22,11:33:8.45:8,0,201 1/1:15,14:29:18.05:201,18,0 0/1:31,16:47:99:186,0,126 0/0:40,0:40:45.11:0,45,527 0/1:23,10:33:43.62:44,0,411 0/1:29,10:39:99:116,0,274 1/1:14,12:26:21.05:224,21,0 0/1:24,7:31:96.90:97,0,186 16 1278767 . C T 9990.45 . AC=50;AF=0.595;AN=84;BaseQRankSum=-18.483;DP=1717;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3474;InbreedingCoeff=-0.0732;MQ=19.13;MQ0=1081;MQRankSum=-3.630;QD=6.81;ReadPosRankSum=-3.052 GT:AD:DP:GQ:PL 0/1:21,11:32:99:130,0,182 0/1:32,7:39:99:120,0,218 0/0:38,0:38:54.15:0,54,638 1/1:16,30:46:54.13:587,54,0 1/1:22,30:52:15.40:396,15,0 0/1:14,19:33:18.26:183,0,18 1/1:17,16:33:9.42:363,9,0 1/1:18,26:44:45.12:504,45,0 1/1:15,22:37:33.09:364,33,0 0/1:27,14:41:99:182,0,207 1/1:8,22:30:21.06:239,21,0 0/1:19,8:27:42.80:43,0,203 0/1:21,10:31:99:111,0,113 0/1:16,21:37:99:223,0,140 1/1:33,72:105:36.86:865,37,0 1/1:16,46:62:36.84:849,37,0 1/1:6,23:29:33.10:389,33,0 0/0:37,0:37:45.13:0,45,548 0/1:36,17:53:99:272,0,515 1/1:24,37:61:60.16:680,60,0 1/1:25,18:43:30.08:335,30,0 0/1:33,18:51:99:272,0,386 0/1:37,15:52:99:134,0,492 0/1:22,3:25:63.46:63,0,222 0/0:33,0:33:39.13:0,39,505 0/1:19,7:26:45.82:46,0,142 0/1:21,8:29:99:117,0,192 0/1:26,8:34:94.75:95,0,250 0/0:43,0:43:57.15:0,57,658 1/1:20,25:45:5.65:346,6,0 1/1:20,17:37:36.09:396,36,0 0/0:70,0:70:27.07:0,27,316 0/1:28,3:31:0.35:0,0,318 0/1:13,20:33:99:274,0,207 0/1:28,19:47:99:182,0,261 1/1:12,14:26:21.05:234,21,0 0/1:37,21:58:99:296,0,203 0/0:30,0:30:21.07:0,21,264 0/1:25,8:33:99:175,0,421 0/1:31,8:39:99:126,0,230 0/1:13,19:32:32.17:269,0,32 0/1:26,7:33:99:131,0,213 16 1278806 . G A 6281.61 . AC=49;AF=0.583;AN=84;BaseQRankSum=-1.918;DP=1267;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4368;InbreedingCoeff=-0.0373;MQ=16.74;MQ0=917;MQRankSum=-2.768;QD=5.90;ReadPosRankSum=0.416 GT:AD:DP:GQ:PL 0/1:14,13:27:74.58:75,0,219 0/1:24,6:30:96.73:110,0,97 0/0:22,0:23:33.08:0,33,379 1/1:18,27:45:27.07:318,27,0 0/1:23,19:42:14.65:93,0,15 1/1:14,15:29:12.03:136,12,0 1/1:17,9:26:18.05:208,18,0 1/1:16,15:31:27.08:329,27,0 1/1:8,21:29:33.09:378,33,0 0/1:13,10:23:45.07:45,0,98 1/1:8,18:26:27.08:310,27,0 0/1:14,7:21:24.41:24,0,67 0/1:12,9:21:18.39:18,0,137 0/1:11,11:22:30.29:30,0,68 1/1:31,55:86:66.18:767,66,0 1/1:11,28:39:45.08:490,45,0 1/1:4,22:26:24.07:278,24,0 0/0:30,0:30:27.07:0,27,305 0/1:30,14:44:99:131,0,366 1/1:13,25:38:36.09:412,36,0 1/1:21,12:33:18.06:220,18,0 0/1:23,9:32:50.16:50,0,173 0/1:24,10:34:72.49:72,0,128 0/1:17,3:20:42.06:42,0,128 0/0:24,0:24:18.06:0,18,236 0/1:20,7:27:51.83:52,0,84 0/1:16,5:21:24.94:25,0,98 0/1:12,8:20:50.17:50,0,161 0/0:31,0:31:30.08:0,30,359 1/1:13,20:33:24.03:248,24,0 1/1:12,20:32:33.09:388,33,0 0/0:53,0:53:12.04:0,12,148 0/0:16,5:21:12.02:0,12,131 0/1:5,10:15:9.63:147,0,10 0/1:20,11:31:17.53:18,0,173 1/1:12,8:20:15.04:177,15,0 0/1:29,19:48:99:144,0,116 0/0:21,0:21:12.04:0,12,151 0/1:17,6:23:99:169,0,179 0/1:25,9:34:99:143,0,155 0/1:7,14:21:20.52:156,0,21 0/1:13,2:15:27.95:28,0,64 16 1278950 . C T 28.13 . AC=4;AF=1.00;AN=4;DP=994;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=1.17;MQ0=992;QD=0.80 GT:AD:DP:GQ:PL ./. ./. ./. ./. ./. 1/1:10,8:18:3:28,3,0 ./. ./. ./. ./. ./. ./. 1/1:11,6:17:3.01:33,3,0 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 16 1291160 . G T 1463.08 . AC=22;AF=0.262;AN=84;BaseQRankSum=-8.381;DP=1071;Dels=0.00;FS=19.732;HRun=0;HaplotypeScore=0.6239;InbreedingCoeff=-0.3614;MQ=27.31;MQ0=222;MQRankSum=0.606;QD=2.51;ReadPosRankSum=3.197 GT:AD:DP:GQ:PL 0/1:13,3:16:19.77:20,0,385 0/1:8,4:12:54.89:55,0,156 0/0:22,0:22:24.04:0,24,255 0/1:44,12:56:99:170,0,698 0/1:36,11:47:99:104,0,660 0/0:27,4:31:14.78:0,15,524 0/1:21,2:23:14.20:14,0,330 0/1:27,5:32:49.39:49,0,488 0/1:10,2:12:26.28:26,0,178 0/0:15,0:15:33.03:0,33,317 0/0:17,5:22:7.33:0,7,231 0/0:17,1:18:12.45:0,12,360 0/1:14,4:18:69.02:69,0,238 0/1:14,7:21:85.56:86,0,269 0/1:31,16:47:99:201,0,642 0/1:22,6:28:16.81:17,0,351 0/1:7,5:12:64.84:65,0,113 0/0:22,0:22:45.06:0,45,434 0/0:22,1:23:27.46:0,27,525 0/1:27,7:35:83.98:84,0,569 0/0:33,2:35:21.88:0,22,677 0/0:19,1:20:15.41:0,15,399 0/1:47,7:54:42.75:43,0,967 0/0:31,1:32:54.07:0,54,540 0/0:23,0:23:45.12:0,45,563 0/0:27,1:28:72.12:0,72,772 0/0:16,2:18:18.40:0,18,400 0/1:23,4:27:17.13:17,0,506 0/0:9,0:9:18.03:0,18,187 0/1:12,5:17:51.39:51,0,219 0/1:12,7:19:86.37:161,0,86 0/0:47,0:47:90.15:0,90,941 0/0:23,2:25:18.48:0,18,474 0/1:10,8:18:99:143,0,197 0/1:21,5:26:82.21:82,0,497 0/1:17,4:21:76.43:76,0,246 0/0:22,4:26:12.86:0,13,452 0/0:23,0:23:51.09:0,51,538 0/0:21,3:25:18.46:0,18,437 0/0:24,0:24:45.09:0,45,494 0/1:8,4:13:67.82:68,0,114 0/1:23,6:29:37.16:37,0,408 16 1291175 . G A 2094.84 . AC=27;AF=0.321;AN=84;BaseQRankSum=11.080;DP=1237;Dels=0.00;FS=170.826;HRun=1;HaplotypeScore=0.4194;InbreedingCoeff=-0.4668;MQ=30.44;MQ0=174;MQRankSum=-0.454;QD=2.60;ReadPosRankSum=0.395 GT:AD:DP:GQ:PL 0/1:22,4:26:8.27:8,0,525 0/1:16,3:19:34.78:35,0,388 0/0:24,0:24:45.09:0,45,478 0/1:48,13:61:99:168,0,977 0/1:47,10:57:99:159,0,888 0/1:35,4:39:8.80:9,0,565 0/1:20,4:24:41.61:42,0,347 0/1:27,6:33:56.04:56,0,595 0/1:12,6:18:97.11:97,0,246 0/0:19,1:20:29.41:0,29,489 0/1:18,3:21:20.18:20,0,283 0/1:20,2:22:9.22:9,0,357 0/1:17,6:23:74.44:74,0,314 0/1:14,7:21:99:102,0,221 0/1:33,18:51:99:266,0,703 0/1:19,6:25:79.55:80,0,352 0/1:9,4:13:55.82:56,0,198 0/0:26,0:26:63.09:0,63,615 0/0:27,2:29:17.87:0,18,667 0/1:32,10:42:99:142,0,586 0/0:32,2:35:24.89:0,25,711 0/0:23,2:25:9.78:0,10,512 0/1:53,10:63:73.67:74,0,1079 0/0:31,2:33:39.48:0,39,636 0/0:31,0:31:72.18:0,72,815 0/0:35,1:36:93.18:0,93,993 0/0:20,2:22:30.42:0,30,509 0/1:27,6:33:66.43:66,0,615 0/0:16,0:16:36.06:0,36,361 0/1:13,6:19:60.04:60,0,213 0/1:11,8:19:99:168,0,105 0/0:55,0:55:99:0,117,1173 0/0:27,2:29:33.50:0,34,584 0/1:9,9:18:99:194,0,193 0/1:21,7:28:99:121,0,460 0/1:17,5:22:62.50:63,0,292 0/1:29,6:35:16.01:16,0,563 0/0:25,0:25:63.11:0,63,636 0/1:23,10:33:84.05:84,0,487 0/0:25,1:26:29.42:0,29,499 0/1:9,3:12:70.83:71,0,78 0/1:22,6:28:33.76:34,0,507 16 1291178 . T C 2554.59 . AC=27;AF=0.321;AN=84;BaseQRankSum=4.512;DP=1298;Dels=0.00;FS=189.818;HRun=0;HaplotypeScore=14.2647;InbreedingCoeff=-0.4673;MQ=31.28;MQ0=166;MQRankSum=-1.437;QD=2.97;ReadPosRankSum=-1.307 GT:AD:DP:GQ:PL 0/1:22,4:26:8.27:8,0,534 0/1:16,3:19:40.78:41,0,344 0/0:22,0:22:45.10:0,45,495 0/1:51,14:67:99:192,0,1035 0/1:52,13:66:99:186,0,1037 0/1:37,7:44:67.80:68,0,636 0/1:20,5:25:57.28:57,0,380 0/1:29,8:37:99:121,0,613 0/1:13,5:18:95.16:95,0,251 0/0:17,3:20:26.41:0,26,471 0/1:15,5:20:47.85:48,0,253 0/0:22,2:24:2.90:0,0,435 0/1:15,9:24:99:150,0,302 0/1:14,8:22:99:101,0,236 0/1:38,24:63:99:428,0,846 0/1:17,6:23:79.53:80,0,356 0/1:9,3:12:29.20:29,0,199 0/0:26,0:26:63.11:0,63,639 0/0:28,2:31:20.86:0,21,724 0/1:35,11:47:99:169,0,705 0/0:34,2:37:24.87:0,25,713 0/1:24,2:26:1.22:1,0,471 0/1:54,9:63:67.97:68,0,1138 0/0:31,2:33:42.49:0,42,670 0/0:31,0:31:78.11:0,78,822 0/0:35,0:35:96.18:0,96,1000 0/0:22,2:24:33.43:0,33,552 0/1:28,5:33:0.78:1,0,729 0/0:18,0:18:45.08:0,45,465 0/1:12,8:20:96.45:96,0,165 0/1:12,10:22:99:167,0,129 0/0:53,1:55:99:0,117,1207 0/0:26,3:29:33.50:0,34,595 0/1:8,11:19:99:199,0,188 0/1:23,6:29:94.62:95,0,537 0/1:16,6:22:59.48:59,0,321 0/1:25,7:32:22.01:22,0,532 0/0:27,0:27:66.11:0,66,700 0/1:25,10:35:99:105,0,527 0/0:23,2:26:4.77:0,5,494 0/1:8,7:15:78.09:114,0,78 0/1:24,6:30:27.75:28,0,569 16 1291182 . C T 2839.01 . AC=27;AF=0.321;AN=84;BaseQRankSum=-17.349;DP=1348;Dels=0.00;FS=177.854;HRun=0;HaplotypeScore=14.4436;InbreedingCoeff=-0.4784;MQ=32.35;MQ0=156;MQRankSum=-3.318;QD=3.18;ReadPosRankSum=-1.249 GT:AD:DP:GQ:PL 0/1:24,5:29:17.25:17,0,614 0/1:19,4:23:28.75:29,0,476 0/0:21,0:21:45.09:0,45,485 0/1:51,14:65:99:199,0,1078 0/1:52,13:65:99:177,0,1143 0/1:36,8:44:92.46:92,0,645 0/1:23,5:28:41.50:42,0,485 0/1:28,10:38:99:140,0,575 0/1:12,5:17:99:101,0,255 0/0:19,3:22:7.77:0,8,524 0/1:13,5:18:47.85:48,0,257 0/1:22,3:25:0.20:0,0,457 0/1:14,9:23:99:157,0,324 0/1:13,9:22:99:136,0,241 0/1:42,23:65:99:408,0,969 0/1:18,8:26:99:123,0,417 0/1:9,5:14:86.10:86,0,197 0/0:26,0:26:66.12:0,66,695 0/0:31,2:33:23.92:0,24,834 0/1:38,10:48:99:163,0,810 0/0:37,2:40:27.92:0,28,779 0/0:21,2:23:1.81:0,2,548 0/1:53,9:63:73.56:74,0,1334 0/0:31,2:33:45.51:0,46,736 0/0:33,0:33:87.21:0,87,1011 0/0:38,0:38:96.17:0,96,1046 0/0:23,3:26:29.69:0,30,597 0/1:30,6:36:41.11:41,0,801 0/0:18,0:18:48.10:0,48,527 0/1:13,10:24:99:138,0,219 0/1:15,12:27:99:204,0,180 0/0:56,0:56:99:0,123,1309 0/0:28,3:31:14.88:0,15,687 0/1:8,12:20:99:192,0,191 0/1:21,6:27:75.32:75,0,550 0/1:17,6:23:73.78:74,0,325 0/1:28,6:35:15.97:16,0,629 0/0:29,0:29:75.17:0,75,849 0/1:28,11:39:99:124,0,630 0/0:24,2:26:7.80:0,8,562 0/1:7,9:17:78.42:137,0,78 0/1:27,5:32:21.73:22,0,662 16 1291188 . C T 13970.43 . AC=38;AF=0.452;AN=84;BaseQRankSum=-4.771;DP=1490;Dels=0.00;FS=158.059;HRun=1;HaplotypeScore=10.7441;InbreedingCoeff=-0.7297;MQ=34.46;MQ0=132;MQRankSum=-5.741;QD=10.32;ReadPosRankSum=-1.315 GT:AD:DP:GQ:PL 0/1:24,11:35:99:194,0,474 0/1:16,10:26:99:173,0,416 0/0:18,1:19:45.09:0,45,493 0/1:16,65:81:99:1385,0,223 0/1:13,51:64:99:1126,0,196 0/1:8,37:46:94.46:660,0,94 0/1:6,23:29:63.92:518,0,64 0/1:9,31:40:99:665,0,147 0/1:7,13:20:99:223,0,134 0/1:15,7:22:99:149,0,343 0/1:6,12:18:47.84:264,0,48 0/1:18,10:28:99:167,0,395 0/1:21,4:25:21.65:22,0,566 0/1:7,18:25:99:352,0,138 0/1:25,50:77:99:1101,0,428 0/1:8,22:30:99:524,0,111 0/1:6,8:14:99:169,0,117 0/0:26,1:27:75.13:0,75,786 0/1:31,9:40:66.77:67,0,829 0/1:12,44:56:99:913,0,200 1/1:2,44:47:42.96:975,43,0 0/1:18,7:25:99:132,0,447 0/1:46,18:64:99:290,0,1245 0/1:21,16:37:99:232,0,546 0/0:35,1:36:93.25:0,93,1156 0/1:29,13:42:99:292,0,805 0/1:16,12:28:99:228,0,344 0/1:30,10:40:99:178,0,738 0/0:19,0:19:54.10:0,54,575 0/1:11,15:26:99:258,0,167 0/1:12,19:31:99:368,0,193 0/1:34,28:62:99:520,0,738 0/1:22,13:35:99:231,0,547 0/1:13,11:24:99:291,0,211 0/1:21,9:30:99:146,0,581 0/1:10,17:27:99:384,0,124 0/1:21,18:40:99:334,0,459 0/0:35,0:35:90.22:0,90,1051 0/1:29,12:41:99:185,0,676 0/1:22,10:32:99:141,0,605 0/1:10,6:16:34.07:34,0,176 0/1:22,8:31:83.23:83,0,564 16 1291308 . A G 1494.75 . AC=22;AF=0.262;AN=84;BaseQRankSum=-0.656;DP=1893;Dels=0.00;FS=40.798;HRun=1;HaplotypeScore=0.8598;InbreedingCoeff=-0.3566;MQ=32.99;MQ0=307;MQRankSum=-2.806;QD=1.49;ReadPosRankSum=4.116 GT:AD:DP:GQ:PL 0/0:28,1:29:39.50:0,39,651 0/0:34,4:39:6.89:0,7,603 0/0:25,0:25:54.09:0,54,557 0/1:97,13:111:54.39:54,0,2297 0/1:67,15:82:15.56:16,0,1618 0/1:41,11:52:99:127,0,997 0/1:44,12:56:99:114,0,978 0/1:41,10:51:28.89:29,0,1062 0/1:23,8:31:89.95:90,0,498 0/0:27,3:30:38.45:0,38,635 0/0:26,4:30:8.85:0,9,597 0/0:22,1:23:21.46:0,21,455 0/0:23,6:29:5:0,5,564 0/1:31,4:35:2.09:2,0,554 0/1:83,18:101:99:112,0,1933 0/1:29,5:34:14.78:15,0,604 0/1:14,7:21:45.64:46,0,330 0/0:31,0:31:66.08:0,66,633 0/0:58,4:62:99:0,126,1289 0/1:47,15:62:99:162,0,1013 0/0:64,1:65:99:0,123,1583 0/0:41,4:45:68.54:0,69,997 0/0:91,9:101:79.04:0,79,2341 0/0:54,5:59:33.28:0,33,1097 0/0:70,0:70:99:0,162,1814 0/1:30,9:39:60.03:60,0,799 0/1:14,8:22:99:113,0,235 0/0:27,2:29:27.50:0,28,685 0/0:34,0:35:78.12:0,78,799 0/1:24,10:34:99:105,0,471 0/1:19,10:29:99:127,0,437 0/0:61,0:61:99:0,150,1550 0/0:45,5:50:39.94:0,40,958 0/1:27,9:36:62.01:62,0,660 0/1:23,9:32:93.80:94,0,461 0/1:33,7:41:74.42:74,0,748 0/1:41,9:50:47.20:47,0,777 0/0:32,0:32:69.14:0,69,748 0/1:25,9:34:99:119,0,478 0/0:42,0:42:90.17:0,90,970 0/1:13,8:21:81.01:81,0,361 0/1:27,5:32:18.66:19,0,480 16 1291318 . G C 2051.71 . AC=25;AF=0.298;AN=84;BaseQRankSum=9.508;DP=1799;Dels=0.00;FS=48.919;HRun=1;HaplotypeScore=1.1820;InbreedingCoeff=-0.4345;MQ=30.87;MQ0=260;MQRankSum=-1.318;QD=2.02;ReadPosRankSum=2.388 GT:AD:DP:GQ:PL 0/0:26,1:29:39.49:0,39,637 0/1:30,4:34:2.22:2,0,436 0/0:23,0:23:45.08:0,45,463 0/1:91,14:105:85.64:86,0,2184 0/1:52,14:66:89.29:89,0,1266 0/1:37,14:52:99:206,0,822 0/1:39,11:50:90.22:90,0,947 0/1:42,12:54:56.16:56,0,1133 0/1:21,10:31:99:115,0,463 0/0:28,3:31:16.80:0,17,641 0/1:20,5:25:6.20:6,0,407 0/1:19,2:21:9.22:9,0,361 0/1:18,6:24:31.70:32,0,409 0/0:28,3:31:1.69:0,2,565 0/1:75,17:92:99:180,0,1561 0/1:19,9:29:99:140,0,354 0/1:13,7:20:45.65:46,0,314 0/0:31,0:31:66.05:0,66,619 0/0:56,4:61:96.95:0,97,1277 0/1:44,16:60:99:223,0,992 0/0:59,3:64:97.87:0,98,1423 0/0:35,5:41:31.84:0,32,798 0/0:91,9:100:77.99:0,78,2336 0/0:56,5:61:15.69:0,16,1143 0/0:62,0:62:99:0,147,1637 0/1:25,8:33:47.41:47,0,673 0/1:17,9:26:99:118,0,295 0/0:27,4:31:2.92:0,0,586 0/0:34,0:34:81.13:0,81,824 0/1:21,11:32:99:159,0,363 0/1:21,8:29:97.24:97,0,482 0/0:63,0:63:99:0,147,1447 0/0:40,8:48:7.30:0,7,804 0/1:20,8:28:73.36:73,0,458 0/1:26,10:36:99:106,0,528 0/1:26,9:35:95.47:95,0,539 0/1:36,10:46:57.04:57,0,627 0/0:34,0:34:75.13:0,75,775 0/1:26,8:34:89.76:90,0,526 0/0:37,0:37:81.14:0,81,838 0/1:15,6:21:61.64:62,0,386 0/1:28,7:35:36.26:36,0,560 16 1306346 . C G 2111.30 . AC=27;AF=0.329;AN=82;BaseQRankSum=7.808;DP=1388;Dels=0.00;FS=53.298;HRun=2;HaplotypeScore=10.1376;InbreedingCoeff=-0.4791;MQ=43.43;MQ0=16;MQRankSum=-13.439;QD=2.22;ReadPosRankSum=-3.978 GT:AD:DP:GQ:PL 0/1:28,3:31:15.40:15,0,624 0/1:19,2:21:3.92:4,0,501 0/0:12,0:12:33.07:0,33,365 0/1:71,17:88:99:262,0,1687 0/1:72,9:81:33.18:33,0,2052 0/1:38,8:46:84.31:84,0,952 0/1:45,12:57:99:169,0,1191 0/1:48,17:65:99:315,0,1160 0/1:27,9:36:99:162,0,647 0/0:26,0:26:66.09:0,66,679 0/1:24,8:32:99:113,0,563 0/0:20,0:20:51.13:0,51,569 0/1:21,5:26:62.12:62,0,450 0/1:19,7:26:99:107,0,417 0/1:78,12:90:80.47:80,0,1924 0/1:24,8:32:99:136,0,623 0/1:12,5:17:75.13:75,0,276 0/1:9,1:16:6.36:6,0,241 0/1:17,9:31:99:151,0,380 0/1:33,12:45:99:176,0,735 0/0:34,0:34:90.18:0,90,946 0/0:31,3:34:0.52:0,1,786 0/0:95,10:105:49.28:0,49,2617 0/0:21,1:22:28.47:0,28,566 0/0:53,0:53:99:0,135,1481 0/0:31,1:32:49.53:0,50,851 0/1:8,2:10:36.82:37,0,219 0/1:24,4:28:22.19:22,0,626 0/0:3,0:8:9.01:0,9,89 0/1:8,1:9:9.38:9,0,199 0/0:20,2:22:4.05:0,4,568 0/0:26,0:26:63.13:0,63,695 0/0:23,0:23:57.14:0,57,638 0/1:16,4:20:83.15:83,0,405 0/1:10,2:12:36.79:37,0,232 0/1:14,3:17:51.39:51,0,330 0/1:17,5:37:66.98:67,0,397 ./.:.:13:.:0,0,0 0/1:6,2:20:8.66:9,0,126 0/1:19,2:21:11.14:11,0,476 0/1:23,2:25:2.94:0,0,530 0/0:18,1:19:20.66:0,21,496 16 1306347 . G C 1921.84 . AC=25;AF=0.298;AN=84;BaseQRankSum=-6.781;DP=1339;Dels=0.00;FS=66.180;HRun=3;HaplotypeScore=10.0606;InbreedingCoeff=-0.4329;MQ=43.44;MQ0=16;MQRankSum=-13.068;QD=2.23;ReadPosRankSum=-3.166 GT:AD:DP:GQ:PL 0/1:28,3:31:7.56:8,0,730 0/1:19,2:21:8.83:9,0,516 0/0:12,0:12:33.09:0,33,403 0/1:70,16:87:99:238,0,1847 0/1:70,9:79:6.88:7,0,2155 0/1:37,8:45:75.63:76,0,998 0/1:42,11:53:99:180,0,1102 0/1:47,15:62:99:324,0,1310 0/1:24,8:32:99:164,0,643 0/0:26,0:26:72.14:0,72,813 0/1:23,7:30:99:117,0,605 0/0:19,0:19:54.13:0,54,632 0/1:20,4:24:36.45:36,0,522 0/1:20,6:26:99:101,0,438 0/1:72,11:83:99:101,0,1877 0/1:23,8:31:99:111,0,659 0/1:10,4:14:59.54:60,0,251 0/0:15,1:16:9.63:0,10,460 0/1:20,10:30:99:164,0,500 0/1:32,10:42:99:128,0,825 0/0:30,1:31:84.20:0,84,983 0/0:29,3:32:1.95:2,0,836 0/0:94,11:105:59.17:0,59,2869 0/0:20,1:21:21.48:0,21,514 0/0:52,0:52:99:0,138,1582 0/0:31,1:32:78.20:0,78,937 0/1:8,2:10:35.88:36,0,230 0/1:21,4:25:60.85:61,0,542 0/0:9,0:9:21.03:0,21,219 0/1:7,1:8:12.38:12,0,191 0/0:19,2:21:1.53:4,0,593 0/0:26,0:26:57.13:0,57,672 0/0:23,0:23:60.18:0,60,740 0/1:16,4:20:71.01:71,0,451 0/1:10,2:12:25.04:25,0,323 0/1:14,3:17:39.49:39,0,449 0/1:31,4:35:11.24:11,0,826 0/0:13,0:13:33.09:0,33,411 0/0:18,2:20:11.66:0,12,427 0/1:17,3:20:4.05:4,0,521 0/1:23,2:25:3.76:4,0,576 0/0:18,1:19:25.55:0,26,558 16 1306355 . T C 30070.46 . AC=60;AF=0.714;AN=84;BaseQRankSum=-8.601;DP=1411;Dels=0.00;FS=55.670;HRun=0;HaplotypeScore=7.6003;InbreedingCoeff=-0.1725;MQ=40.96;MQ0=16;MQRankSum=-15.550;QD=22.09;ReadPosRankSum=-3.931 GT:AD:DP:GQ:PL 1/1:0,26:26:75.05:718,75,0 1/1:0,22:22:57.09:580,57,0 0/1:3,6:9:45.50:168,0,46 1/1:0,105:105:99:2984,280,0 0/1:35,54:89:99:1417,0,932 0/1:14,38:52:99:919,0,377 0/1:21,39:60:99:1008,0,494 1/1:0,64:64:99:1956,180,0 1/1:0,25:25:72.10:722,72,0 0/1:12,14:26:99:305,0,274 1/1:0,29:29:78.13:823,78,0 0/1:20,3:23:28.45:28,0,577 0/1:16,9:25:99:176,0,445 0/1:12,13:25:99:292,0,298 1/1:1,86:87:99:2358,237,0 1/1:0,39:39:99:1218,114,0 1/1:1,16:17:8.91:371,9,0 0/1:7,10:17:99:196,0,210 1/1:0,29:29:78.11:795,78,0 1/1:0,44:44:99:1197,114,0 0/1:12,17:29:99:396,0,282 1/1:0,34:34:90.17:945,90,0 1/1:1,108:109:99:3185,267,0 0/1:7,15:22:99:376,0,150 1/1:0,52:52:99:1510,141,0 0/1:28,4:32:48.72:49,0,776 0/1:3,8:11:74.42:207,0,74 0/1:16,13:29:99:289,0,391 0/1:2,6:8:54.23:98,0,54 0/1:2,8:10:33.42:224,0,33 1/1:0,27:27:78.15:807,78,0 0/0:20,0:20:48.11:0,48,546 0/0:28,2:30:15.30:0,15,826 0/1:18,5:23:90.41:90,0,557 0/1:6,8:14:99:182,0,181 0/1:9,12:21:99:286,0,233 1/1:0,36:36:93.18:971,93,0 1/1:0,10:10:24.06:279,24,0 1/1:1,19:20:45.08:468,45,0 1/1:0,14:14:42.08:435,42,0 1/1:0,27:27:72.08:715,72,0 0/1:7,13:20:99:327,0,113 16 1308333 . G A 1140.66 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.499;DP=2295;Dels=0.00;FS=6.831;HRun=0;HaplotypeScore=1.9750;InbreedingCoeff=-0.0244;MQ=57.84;MQ0=0;MQRankSum=2.534;QD=11.29;ReadPosRankSum=0.179 GT:AD:DP:GQ:PL 0/0:38,0:39:96.25:0,96,1188 0/1:32,23:55:99:696,0,763 0/1:27,19:46:99:507,0,716 0/0:107,0:107:99:0,256,3387 0/0:99,0:99:99:0,235,3170 0/0:52,0:52:99:0,135,1695 0/0:54,0:54:99:0,144,1870 0/0:49,0:49:99:0,132,1681 0/0:50,0:50:99:0,135,1698 0/0:44,0:44:99:0,114,1405 0/0:29,0:29:81.25:0,81,1016 0/0:36,0:36:99:0,102,1260 0/0:38,0:38:93.29:0,93,1182 0/0:35,0:35:96.30:0,96,1204 0/0:129,0:129:99:0,331,4063 0/0:56,0:56:99:0,150,1881 0/0:40,0:40:99:0,108,1353 0/0:42,0:42:99:0,111,1379 0/0:77,0:77:99:0,199,2413 0/0:99,0:100:99:0,232,2898 0/0:79,0:80:99:0,205,2470 0/0:64,0:64:99:0,168,2060 0/0:95,0:95:99:0,241,3180 0/0:46,0:46:99:0,114,1498 0/0:51,0:51:99:0,141,1837 0/0:50,0:50:99:0,129,1683 0/0:21,0:21:57.16:0,57,692 0/0:39,0:39:99:0,108,1343 0/0:38,0:38:99:0,108,1310 0/0:46,0:46:99:0,117,1424 0/0:31,0:31:81.23:0,81,998 0/0:72,0:72:99:0,184,2375 0/0:67,0:67:99:0,178,2222 0/0:37,0:37:99:0,102,1264 0/0:45,0:45:99:0,120,1535 0/0:56,0:56:99:0,144,1814 0/0:76,0:76:99:0,187,2301 0/0:34,0:34:87.28:0,87,1113 0/0:55,0:55:99:0,144,1781 0/0:35,0:35:96.27:0,96,1157 0/0:31,0:31:87.25:0,87,1049 0/0:49,0:49:99:0,126,1586 16 1364365 . A G 7678.01 . AC=13;AF=0.155;AN=84;BaseQRankSum=-0.653;DP=1840;Dels=0.00;FS=0.265;HRun=2;HaplotypeScore=1.1663;InbreedingCoeff=0.1809;MQ=59.12;MQ0=0;MQRankSum=-1.485;QD=15.48;ReadPosRankSum=0.156 GT:AD:DP:GQ:PL 0/0:27,0:27:75.24:0,75,937 0/0:44,0:44:99:0,126,1536 0/0:36,0:36:99:0,99,1214 0/1:32,33:65:99:907,0,913 0/1:29,19:48:99:494,0,803 0/0:29,0:29:72.23:0,72,953 0/0:43,0:43:99:0,120,1570 0/1:22,24:46:99:663,0,593 0/1:17,14:32:99:363,0,546 0/0:29,1:30:75.23:0,75,929 1/1:0,31:31:87.25:1042,87,0 0/0:34,0:34:93.29:0,93,1168 0/0:37,0:37:99:0,105,1321 0/1:25,15:40:99:434,0,729 0/1:55,64:120:99:1805,0,1466 0/0:36,0:36:99:0,105,1269 1/1:1,23:24:42.50:764,43,0 0/0:35,0:35:96.30:0,96,1188 0/0:76,0:76:99:0,208,2587 0/0:84,0:84:99:0,223,2798 0/0:62,0:62:99:0,172,2102 0/0:37,0:37:99:0,102,1235 0/0:66,0:66:99:0,181,2242 0/0:27,0:27:72.23:0,72,922 0/0:50,0:50:99:0,129,1625 0/0:30,0:30:84.26:0,84,1076 0/1:15,20:35:99:572,0,436 0/1:20,17:37:99:520,0,505 0/0:34,0:34:99:0,99,1201 0/0:33,0:33:99:0,99,1217 0/0:34,1:35:67.93:0,68,1161 0/0:87,0:87:99:0,235,2934 0/0:42,1:43:99:0,117,1441 0/0:29,1:30:87.27:0,87,1073 0/0:35,0:35:99:0,102,1232 0/0:46,0:46:99:0,132,1597 0/0:61,0:61:99:0,178,2186 0/0:39,2:41:74.36:0,74,1290 0/0:40,0:40:99:0,117,1457 0/0:37,0:37:99:0,99,1220 0/1:12,6:18:99:116,0,393 0/0:39,0:39:99:0,99,1247 16 1394507 . A C 134025.65 . AC=80;AF=0.952;AN=84;BaseQRankSum=12.043;DP=4097;Dels=0.00;FS=4.621;HRun=1;HaplotypeScore=2.6875;InbreedingCoeff=-0.0500;MQ=58.31;MQ0=0;MQRankSum=1.940;QD=32.71;ReadPosRankSum=1.289 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2633,214,0 0/1:36,45:81:99:1372,0,916 0/1:36,18:54:99:464,0,998 1/1:1,164:165:99:5952,463,0 1/1:0,159:159:99:5783,445,0 1/1:4,120:124:99:4314,298,0 1/1:0,118:118:99:4234,331,0 1/1:1,114:115:99:4072,316,0 1/1:0,80:80:99:2751,223,0 1/1:0,57:57:99:1890,156,0 1/1:0,64:64:99:2255,184,0 1/1:0,74:74:99:2386,199,0 0/1:43,29:72:99:744,0,1245 1/1:1,71:72:99:2488,202,0 1/1:2,244:246:99:8060,665,0 1/1:0,91:91:99:3283,271,0 1/1:0,83:83:99:2798,232,0 1/1:0,63:63:99:2241,181,0 1/1:1,133:137:99:4430,370,0 1/1:2,135:137:99:4612,376,0 1/1:1,107:109:99:3737,313,0 1/1:0,110:110:99:3908,319,0 1/1:0,202:202:99:7321,572,0 1/1:0,82:82:99:2884,226,0 1/1:0,103:104:99:3716,289,0 1/1:0,90:90:99:3385,259,0 1/1:2,62:64:99:2185,113,0 1/1:0,79:79:99:2772,226,0 1/1:0,73:73:99:2547,205,0 1/1:0,84:84:99:2913,241,0 1/1:0,78:78:99:2666,220,0 0/1:83,54:137:99:1528,0,2347 1/1:0,108:108:99:3846,316,0 1/1:0,64:64:99:2222,181,0 1/1:0,65:65:99:2298,187,0 1/1:0,75:75:99:2640,214,0 1/1:0,132:132:99:4618,376,0 1/1:0,82:82:99:2677,223,0 1/1:0,68:68:99:2288,184,0 1/1:1,72:74:99:2502,208,0 1/1:3,68:71:84.13:2095,84,0 1/1:0,71:71:99:2517,205,0 16 1395868 . G A 155.09 . AC=2;AF=0.024;AN=82;BaseQRankSum=-1.976;DP=299;Dels=0.00;FS=11.966;HRun=0;HaplotypeScore=0.5053;InbreedingCoeff=-0.0513;MQ=58.58;MQ0=0;MQRankSum=0.721;QD=14.10;ReadPosRankSum=-0.424 GT:AD:DP:GQ:PL 0/1:2,1:3:22.63:27,0,23 0/1:2,6:8:50.63:189,0,51 0/0:5,0:5:12.03:0,12,142 0/0:13,0:13:33.10:0,33,425 0/0:12,0:12:33.11:0,33,444 0/0:7,0:7:21.07:0,21,271 0/0:3,0:3:9.03:0,9,112 0/0:9,0:9:27.08:0,27,347 0/0:4,0:4:9.03:0,9,116 0/0:3,0:3:6.02:0,6,69 0/0:9,0:9:27.08:0,27,330 0/0:8,0:8:24.08:0,24,310 0/0:7,0:7:21.06:0,21,254 0/0:5,0:5:15.04:0,15,168 0/0:20,0:20:60.18:0,60,728 0/0:10,0:10:27.08:0,27,319 0/0:5,0:5:15.05:0,15,184 ./. 0/0:12,0:12:27.08:0,27,316 0/0:14,0:14:33.09:0,33,415 0/0:11,0:11:18.06:0,18,231 0/0:10,0:10:27.09:0,27,348 0/0:13,0:13:39.07:0,39,450 0/0:4,0:4:12.04:0,12,159 0/0:2,0:2:6.02:0,6,81 0/0:2,0:2:6.02:0,6,80 0/0:3,0:3:9.03:0,9,118 0/0:10,0:10:21.06:0,21,273 0/0:9,0:9:27.06:0,27,298 0/0:3,0:4:9.03:0,9,116 0/0:10,0:10:27.08:0,27,340 0/0:7,0:7:18.06:0,18,238 0/0:4,0:4:12.04:0,12,156 0/0:7,0:7:18.05:0,18,220 0/0:10,0:10:27.08:0,27,342 0/0:1,0:1:3.01:0,3,39 0/0:15,0:15:39.11:0,39,480 0/0:5,0:5:12.03:0,12,144 0/0:6,0:6:18.05:0,18,215 0/0:3,0:3:6.02:0,6,77 0/0:3,0:3:9.01:0,9,96 0/0:3,0:3:9.03:0,9,112 16 1397985 . C T 1410.03 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.364;DP=3342;DS;Dels=0.00;FS=0.525;HRun=0;HaplotypeScore=2.6921;InbreedingCoeff=-0.0244;MQ=58.63;MQ0=0;MQRankSum=1.294;QD=13.96;ReadPosRankSum=1.074 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,108,1307 0/0:52,0:52:99:0,135,1580 0/0:43,0:43:99:0,105,1255 0/0:226,0:226:99:0,569,7127 0/0:170,0:170:99:0,451,5603 0/0:141,0:141:99:0,343,4258 0/0:116,0:116:99:0,289,3592 0/0:140,0:140:99:0,361,4453 0/1:30,27:57:99:789,0,718 0/0:45,0:45:99:0,126,1428 0/1:20,24:44:99:683,0,520 0/0:52,0:52:99:0,150,1695 0/0:39,0:39:99:0,105,1167 0/0:47,0:47:99:0,123,1422 0/0:217,0:217:99:0,532,6218 0/0:55,0:55:99:0,153,1758 0/0:41,0:41:99:0,111,1231 0/0:36,0:36:99:0,105,1188 0/0:74,0:74:99:0,204,2340 0/0:108,0:108:99:0,271,3208 0/0:87,0:88:99:0,232,2659 0/0:68,0:68:99:0,183,2101 0/0:218,0:218:99:0,560,6956 0/0:113,0:114:99:0,268,3349 0/0:165,0:165:99:0,400,5053 0/0:105,0:105:99:0,283,3505 0/0:27,0:27:78.20:0,78,900 0/0:51,0:51:99:0,150,1675 0/0:47,0:47:99:0,123,1459 0/0:51,0:51:99:0,132,1523 0/0:41,0:41:99:0,114,1257 0/0:107,0:107:99:0,259,3020 0/0:66,0:66:99:0,180,2076 0/0:60,0:60:99:0,162,1847 0/0:49,0:49:99:0,126,1515 0/0:50,0:50:99:0,135,1527 0/0:73,0:73:99:0,199,2297 0/0:49,0:49:99:0,141,1558 0/0:42,0:42:99:0,114,1337 0/0:50,0:50:99:0,129,1528 0/0:40,0:40:99:0,105,1202 0/0:34,0:34:90.26:0,90,1082 16 1412103 . G C 51.21 . AC=8;AF=0.095;AN=84;BaseQRankSum=-6.975;DP=570;Dels=0.00;FS=191.069;HRun=2;HaplotypeScore=0.4104;InbreedingCoeff=-0.1759;MQ=57.46;MQ0=0;MQRankSum=-0.214;QD=0.63;ReadPosRankSum=-6.068 GT:AD:DP:GQ:PL 0/0:6,1:7:15.02:0,15,154 0/0:5,1:6:12.03:0,12,130 0/0:7,3:10:1.89:3,0,204 0/0:25,5:30:63.15:0,63,697 0/0:20,6:26:30.47:0,30,592 0/0:10,1:11:18.05:0,18,205 0/0:7,3:10:12.04:0,12,143 0/1:11,4:15:18.08:18,0,348 0/0:7,2:9:21.04:0,21,218 0/1:5,1:6:8.63:9,0,149 0/1:4,4:8:15.57:16,0,103 0/0:14,3:17:36.09:0,36,389 0/0:2,2:4:6.01:0,6,63 0/0:12,2:14:6.36:0,6,283 0/0:25,11:36:1.44:4,0,633 0/1:12,4:17:4.33:4,0,226 0/0:11,2:13:30.07:0,30,318 0/0:9,3:12:2.70:1,0,196 0/0:16,1:17:36.09:0,36,385 0/0:18,4:22:54.12:0,54,570 0/0:16,4:20:8.73:0,9,480 0/0:14,5:19:5.66:0,6,355 0/0:21,6:27:51.10:0,51,570 0/0:9,2:11:12.60:0,13,175 0/0:9,1:10:24.05:0,24,260 0/0:5,4:9:12.02:0,12,123 0/1:5,4:9:35.25:35,0,150 0/0:8,0:8:21.03:0,21,226 0/0:10,2:12:2.76:1,0,270 0/0:11,0:11:30.06:0,30,309 0/0:3,0:3:6.02:0,6,72 0/0:19,0:19:42.10:0,42,452 0/0:18,3:21:48.09:0,48,501 0/0:9,2:11:27.06:0,27,290 0/0:9,0:9:21.03:0,21,216 0/0:8,3:11:1.56:4,0,146 0/0:18,2:20:51.11:0,51,542 0/1:6,3:9:12.55:13,0,137 0/0:11,4:15:30.06:0,30,317 0/1:5,3:8:35.35:35,0,84 0/1:6,3:9:23.33:23,0,159 0/0:6,3:9:1.56:4,0,181 16 1417791 . T C 118.35 . AC=2;AF=0.026;AN=78;BaseQRankSum=0.185;DP=207;Dels=0.00;FS=3.918;HRun=0;HaplotypeScore=0.1726;InbreedingCoeff=0.1809;MQ=59.28;MQ0=0;MQRankSum=1.865;QD=7.40;ReadPosRankSum=-0.117 GT:AD:DP:GQ:PL 0/0:4,0:4:9.03:0,9,107 0/0:2,0:2:6.02:0,6,73 0/0:6,0:6:15.05:0,15,184 0/0:16,0:17:36.11:0,36,436 0/0:10,0:10:27.08:0,27,319 0/0:8,0:8:18.04:0,18,211 0/0:2,0:2:6.02:0,6,72 0/1:6,3:10:91.74:92,0,143 0/0:3,0:3:9.03:0,9,107 0/0:1,0:1:3.01:0,3,36 0/0:2,0:2:6.02:0,6,69 0/0:2,0:3:6.02:0,6,72 ./. 0/1:1,5:6:0.51:96,9,0 0/0:13,0:13:33.08:0,33,386 0/0:2,0:2:6.02:0,6,71 0/0:4,0:4:9.03:0,9,105 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.02:0,6,74 0/0:9,0:9:27.06:0,27,288 0/0:13,0:13:33.10:0,33,403 0/0:5,0:5:15.04:0,15,168 0/0:5,0:5:12.03:0,12,142 0/0:8,0:8:15.04:0,15,181 0/0:5,0:5:15.03:0,15,165 0/0:6,0:6:18.04:0,18,198 0/0:2,0:2:3.01:0,3,33 0/0:3,0:3:6.02:0,6,72 0/0:2,0:2:6.02:0,6,70 0/0:5,0:6:15.04:0,15,165 ./. 0/0:10,0:10:27.08:0,27,322 0/0:4,1:5:9.03:0,9,105 0/0:6,0:6:18.05:0,18,214 0/0:2,0:2:6.02:0,6,70 0/0:5,0:5:15.05:0,15,181 0/0:5,0:5:15.05:0,15,179 0/0:6,0:6:15.05:0,15,178 0/0:3,0:3:9.02:0,9,100 0/0:1,0:1:3.01:0,3,32 0/0:4,0:4:12.03:0,12,137 ./. 16 1478413 . C T 251.16 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.595;DP=776;Dels=0.00;FS=8.651;HRun=0;HaplotypeScore=1.1402;InbreedingCoeff=-0.0132;MQ=58.83;MQ0=0;MQRankSum=0.209;QD=11.42;ReadPosRankSum=-0.504 GT:AD:DP:GQ:PL 0/0:16,0:16:42.13:0,42,524 0/0:16,0:16:42.10:0,42,521 0/0:9,0:9:24.08:0,24,307 0/0:37,0:37:90.27:0,90,1163 0/0:14,0:14:39.13:0,39,515 0/0:18,0:18:51.13:0,51,641 0/1:11,11:22:99:297,0,285 0/0:20,0:20:51.16:0,51,663 0/0:13,0:13:30.09:0,30,392 0/0:7,0:7:18.05:0,18,203 0/0:25,0:25:66.20:0,66,833 0/0:16,0:16:42.13:0,42,517 0/0:17,0:17:48.13:0,48,574 0/0:13,0:13:36.12:0,36,469 0/0:67,0:67:99:0,156,1947 0/0:23,0:23:57.16:0,57,699 0/0:20,1:21:26.49:0,26,626 0/0:10,0:10:27.08:0,27,330 0/0:18,0:18:45.14:0,45,573 0/0:29,0:30:72.23:0,72,937 0/0:22,0:22:63.11:0,63,712 0/0:8,0:8:18.05:0,18,225 0/0:34,0:34:87.27:0,87,1142 0/0:17,0:17:45.14:0,45,596 0/0:24,0:24:60.17:0,60,740 0/0:27,0:27:63.20:0,63,852 0/0:8,0:8:15.05:0,15,195 0/0:8,0:8:24.06:0,24,278 0/0:13,0:13:30.10:0,30,397 0/0:10,0:10:27.08:0,27,317 0/0:10,0:10:30.09:0,30,359 0/0:10,0:10:24.07:0,24,307 0/0:25,0:25:54.14:0,54,680 0/0:21,0:21:57.17:0,57,707 0/0:14,0:14:33.10:0,33,406 0/0:22,0:22:48.15:0,48,627 0/0:21,0:22:60.17:0,60,721 0/0:9,0:9:27.08:0,27,328 0/0:19,0:19:42.13:0,42,537 0/0:18,0:18:42.13:0,42,539 0/0:8,0:8:21.07:0,21,278 0/0:15,0:15:45.14:0,45,569 16 1500501 . C T 1844.50 . AC=11;AF=0.131;AN=84;BaseQRankSum=0.187;DP=464;Dels=0.00;FS=1.245;HRun=0;HaplotypeScore=0.4078;InbreedingCoeff=0.0498;MQ=58.94;MQ0=0;MQRankSum=0.115;QD=14.76;ReadPosRankSum=1.349 GT:AD:DP:GQ:PL 0/0:13,0:13:39.11:0,39,456 0/0:6,0:6:18.06:0,18,223 0/0:6,0:6:18.05:0,18,212 0/1:13,14:27:99:392,0,365 0/1:13,7:20:99:172,0,400 0/0:9,0:9:27.08:0,27,353 0/0:8,0:8:24.08:0,24,317 0/0:9,0:9:24.07:0,24,308 0/1:5,6:11:99:186,0,105 0/0:9,0:9:27.08:0,27,312 0/1:5,1:6:20.52:21,0,164 1/1:0,10:10:30.09:359,30,0 0/1:6,5:11:99:148,0,173 0/1:4,4:8:99:124,0,123 0/0:28,0:28:66.19:0,66,802 0/0:17,0:17:45.11:0,45,543 0/0:7,0:8:21.05:0,21,231 0/0:6,0:6:18.06:0,18,221 0/0:8,0:8:21.06:0,21,241 0/0:19,0:19:51.16:0,51,640 0/0:12,0:12:33.09:0,33,387 0/0:12,0:12:36.09:0,36,413 0/0:17,0:17:42.13:0,42,548 0/0:6,0:6:18.05:0,18,219 0/0:9,0:9:27.09:0,27,363 0/0:14,0:14:39.11:0,39,484 0/0:10,0:10:30.09:0,30,358 0/0:12,0:12:33.10:0,33,385 0/0:4,0:4:9.02:0,9,112 0/0:8,0:8:24.07:0,24,297 0/0:7,0:7:21.06:0,21,248 0/0:17,0:17:48.10:0,48,557 0/0:8,0:8:18.05:0,18,230 0/0:7,0:7:21.06:0,21,258 0/0:8,0:8:21.07:0,21,275 0/0:12,0:12:30.07:0,30,345 0/0:14,0:14:39.09:0,39,454 0/0:5,0:5:15.04:0,15,176 0/0:11,0:11:27.08:0,27,340 0/1:7,7:14:99:218,0,211 0/1:3,4:7:54.12:101,0,54 0/1:3,8:11:77.29:269,0,77 16 1509123 . G A 5892.43 . AC=16;AF=0.190;AN=84;BaseQRankSum=9.756;DP=1024;Dels=0.00;FS=1.374;HRun=0;HaplotypeScore=0.7968;InbreedingCoeff=0.0735;MQ=58.75;MQ0=0;MQRankSum=0.492;QD=18.13;ReadPosRankSum=-0.618 GT:AD:DP:GQ:PL 0/0:17,0:17:45.11:0,45,502 0/1:7,17:24:99:498,0,132 0/1:5,6:11:99:156,0,139 0/1:20,22:42:99:621,0,523 0/1:18,24:42:99:714,0,527 0/0:28,0:28:75.23:0,75,925 0/0:26,0:26:63.18:0,63,774 0/0:19,0:19:54.13:0,54,642 0/0:29,0:29:78.20:0,78,891 0/0:17,0:17:51.11:0,51,553 0/0:18,0:18:54.14:0,54,610 1/1:0,19:19:51.16:630,51,0 0/1:8,11:19:99:297,0,184 0/1:5,11:16:99:335,0,103 0/0:50,0:50:99:0,135,1550 0/0:23,0:23:63.18:0,63,733 0/0:14,0:14:42.11:0,42,475 0/0:19,0:19:57.15:0,57,633 0/0:33,0:33:87.14:0,87,921 0/0:43,0:43:99:0,111,1280 0/1:12,18:30:99:546,0,226 0/1:11,13:24:99:372,0,292 0/0:44,0:44:99:0,114,1393 0/0:24,0:24:66.20:0,66,808 0/0:28,0:28:78.23:0,78,948 0/0:28,0:28:72.22:0,72,898 0/0:25,0:25:57.16:0,57,675 0/0:20,0:20:57.15:0,57,638 0/0:12,0:12:30.08:0,30,354 0/1:10,9:19:99:237,0,254 0/0:25,0:25:66.13:0,66,729 0/0:22,0:22:54.15:0,54,625 0/1:12,17:29:99:482,0,298 0/0:17,0:17:45.12:0,45,517 0/0:18,0:18:42.09:0,42,495 0/0:24,0:24:63.13:0,63,699 0/0:29,0:29:84.20:0,84,929 0/0:26,0:26:72.19:0,72,790 0/0:21,0:21:63.14:0,63,671 1/1:0,17:17:48.15:587,48,0 0/1:10,4:14:99:104,0,261 0/1:9,10:19:99:312,0,238 16 1545448 . A G 7201.32 . AC=58;AF=0.690;AN=84;BaseQRankSum=-7.494;DP=381;Dels=0.00;FS=0.628;HRun=1;HaplotypeScore=0.2636;InbreedingCoeff=-0.1330;MQ=57.97;MQ0=0;MQRankSum=-0.215;QD=20.34;ReadPosRankSum=-1.942 GT:AD:DP:GQ:PL 0/1:1,4:5:19.32:113,0,19 0/1:4,4:8:46:46,0,130 1/1:0,4:4:12:116,12,0 0/1:9,4:13:63.36:63,0,217 0/0:10,0:11:18.04:0,18,208 0/1:2,4:6:14.65:90,0,15 0/0:12,0:12:36.11:0,36,438 1/1:0,12:12:30.04:319,30,0 1/1:0,8:8:24.05:256,24,0 1/1:0,10:10:24.06:269,24,0 1/1:0,5:5:12.04:142,12,0 1/1:0,5:5:12.02:131,12,0 0/1:2,6:8:47.32:173,0,47 1/1:0,5:5:15.03:155,15,0 1/1:0,21:21:54.11:566,54,0 0/1:5,7:12:99:137,0,118 1/1:0,9:9:21.03:212,21,0 1/1:0,4:4:12.03:133,12,0 1/1:0,13:13:33.08:359,33,0 1/1:0,15:15:39.05:396,39,0 0/1:2,6:8:50.67:160,0,51 0/1:4,4:8:42.15:42,0,114 1/1:0,17:17:48.10:520,48,0 0/1:2,5:7:55.45:74,0,55 0/1:5,5:10:60.51:91,0,61 0/1:7,3:10:70.19:70,0,153 1/1:0,5:5:15.04:165,15,0 0/1:5,4:9:58.92:79,0,59 0/1:1,6:7:18.93:156,0,19 1/1:0,14:14:39.06:386,39,0 0/1:6,2:8:41.86:42,0,157 0/1:8,14:22:99:366,0,117 0/1:1,8:10:9.91:231,0,10 0/1:2,4:6:54.18:118,0,54 0/1:4,1:5:17.45:17,0,129 0/1:2,5:7:45.40:134,0,45 0/1:4,8:12:99:214,0,108 0/0:4,0:4:9.03:0,9,106 1/1:0,6:6:18.05:195,18,0 1/1:0,5:5:9.02:91,9,0 1/1:0,7:7:18.02:179,18,0 1/1:0,8:8:18.05:195,18,0 16 1569929 . C G 44.67 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.144;DP=944;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.6295;InbreedingCoeff=-0.0122;MQ=58.88;MQ0=0;MQRankSum=0.448;QD=4.96;ReadPosRankSum=-0.916 GT:AD:DP:GQ:PL 0/0:12,0:12:33.11:0,33,418 0/0:11,0:11:30.10:0,30,384 0/0:12,0:12:27.08:0,27,341 0/0:56,0:56:99:0,153,2038 0/0:42,0:42:99:0,114,1531 0/0:21,0:21:57.19:0,57,762 0/0:25,0:25:69.19:0,69,893 0/0:21,0:21:51.16:0,51,668 0/0:15,0:15:45.13:0,45,545 0/0:20,0:20:54.17:0,54,674 0/0:20,0:20:48.15:0,48,618 0/0:19,0:19:57.17:0,57,699 0/0:8,0:8:24.07:0,24,297 0/0:18,0:18:51.16:0,51,634 0/0:50,0:50:99:0,126,1589 0/0:27,0:27:78.25:0,78,986 0/0:22,0:22:63.20:0,63,785 0/0:12,0:12:30.09:0,30,364 0/0:23,0:23:69.22:0,69,860 0/0:39,0:39:99:0,108,1373 0/0:36,0:36:96.30:0,96,1211 0/0:17,0:17:48.14:0,48,590 0/0:44,0:44:99:0,129,1679 0/0:15,0:15:39.13:0,39,534 0/0:32,0:32:90.30:0,90,1215 0/0:17,0:17:45.15:0,45,607 0/0:8,0:8:24.05:0,24,285 0/0:22,0:22:60.19:0,60,747 0/0:13,0:13:39.09:0,39,476 0/0:20,0:20:54.16:0,54,666 0/0:19,0:19:54.17:0,54,691 0/0:34,0:34:84.26:0,84,1073 0/0:19,0:19:54.15:0,54,655 0/0:15,0:16:42.13:0,42,533 0/0:29,0:29:84.26:0,84,1049 0/0:21,0:21:57.17:0,57,695 0/0:29,0:29:72.21:0,72,883 0/0:13,0:13:36.11:0,36,455 0/0:19,0:19:51.14:0,51,612 0/0:17,0:17:45.15:0,45,582 0/0:22,0:22:63.16:0,63,767 0/1:6,3:9:90.88:91,0,146 16 1573890 . G A 371.38 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.124;DP=1301;Dels=0.00;FS=15.770;HRun=0;HaplotypeScore=0.8181;InbreedingCoeff=-0.0245;MQ=58.77;MQ0=0;MQRankSum=0.540;QD=9.28;ReadPosRankSum=-0.176 GT:AD:DP:GQ:PL 0/0:29,0:29:78.22:0,78,935 0/0:34,0:34:87.24:0,87,1027 0/0:18,0:19:51.14:0,51,591 0/0:73,0:73:99:0,196,2274 0/0:57,0:57:99:0,156,1923 0/0:42,0:42:99:0,111,1336 0/0:36,0:36:96.23:0,96,1117 0/0:31,0:31:69.20:0,69,858 0/0:28,0:28:72.20:0,72,859 0/0:24,0:24:60.18:0,60,736 0/0:33,0:33:84.23:0,84,1003 0/0:16,0:16:45.13:0,45,531 0/0:19,0:19:54.16:0,54,647 0/0:14,0:14:39.10:0,39,460 0/0:78,0:78:99:0,186,2239 0/0:30,0:31:87.20:0,87,981 0/0:29,0:29:75.20:0,75,868 0/0:11,0:11:33.09:0,33,380 0/0:39,0:39:93.22:0,93,1097 0/0:32,0:32:78.22:0,78,942 0/0:41,0:41:99:0,105,1215 0/0:27,0:27:69.16:0,69,766 0/0:60,0:60:99:0,162,1973 0/0:38,0:38:90.25:0,90,1090 0/0:43,0:43:99:0,114,1363 0/0:38,0:38:96.28:0,96,1162 0/0:19,0:19:57.16:0,57,667 0/0:21,0:22:54.16:0,54,639 0/0:27,0:27:72.19:0,72,840 0/0:10,0:10:27.04:0,27,285 0/0:15,0:15:42.10:0,42,474 0/0:44,0:44:99:0,105,1232 0/0:45,0:45:99:0,114,1366 0/0:20,0:20:51.15:0,51,619 0/0:15,0:15:42.12:0,42,503 0/0:31,0:31:69.17:0,69,772 0/0:40,0:41:99:0,108,1191 0/0:23,0:23:66.18:0,66,750 0/0:18,0:18:51.14:0,51,585 0/1:16,10:26:99:211,0,482 0/1:4,9:14:60.72:223,0,61 0/0:9,0:9:24.06:0,24,269 16 1574863 . G A 11919.61 . AC=22;AF=0.262;AN=84;BaseQRankSum=4.803;DP=1554;Dels=0.00;FS=0.434;HRun=0;HaplotypeScore=1.3073;InbreedingCoeff=-0.1085;MQ=58.07;MQ0=0;MQRankSum=4.239;QD=15.87;ReadPosRankSum=1.249 GT:AD:DP:GQ:PL 0/1:13,23:36:99:730,0,319 0/0:24,0:24:72.19:0,72,829 0/0:23,0:23:60.15:0,60,697 0/0:78,0:78:99:0,223,2670 0/1:45,40:85:99:1174,0,1305 0/0:48,0:48:99:0,138,1697 0/0:46,0:46:99:0,129,1585 0/0:51,0:51:99:0,129,1591 0/0:23,0:23:63.18:0,63,757 0/1:9,12:21:99:371,0,228 0/0:31,0:31:78.23:0,78,946 0/1:11,14:25:99:415,0,323 0/1:12,10:22:99:263,0,356 0/1:8,14:22:99:445,0,193 0/1:44,36:82:99:1031,0,1174 0/1:21,10:31:99:208,0,640 0/1:15,13:28:99:392,0,452 0/0:20,0:20:48.12:0,48,551 0/0:46,0:47:99:0,126,1485 0/0:60,0:60:99:0,168,2003 0/1:27,22:49:99:639,0,721 0/1:15,15:30:99:453,0,437 0/1:41,46:88:99:1427,0,1209 0/1:24,24:48:99:652,0,683 0/0:54,0:54:99:0,162,1971 0/1:17,21:38:99:634,0,513 0/0:22,0:22:63.17:0,63,739 0/0:23,0:23:66.18:0,66,761 0/0:18,0:18:54.14:0,54,639 1/1:0,28:28:78.23:947,78,0 0/1:7,9:17:99:286,0,148 0/0:52,0:53:99:0,144,1684 0/1:17,17:34:99:484,0,459 0/1:8,14:22:99:400,0,192 1/1:0,22:22:63.20:782,63,0 0/0:25,0:25:75.21:0,75,869 0/0:48,0:49:99:0,138,1598 0/0:27,0:27:75.18:0,75,845 0/0:33,0:33:93.24:0,93,1056 0/0:27,0:27:75.18:0,75,871 0/0:21,0:21:60.12:0,60,676 0/1:16,7:23:99:187,0,462 16 1584294 . C T 415.58 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.776;DP=1647;Dels=0.00;FS=4.310;HRun=1;HaplotypeScore=1.7863;InbreedingCoeff=-0.0121;MQ=58.60;MQ0=0;MQRankSum=0.436;QD=7.99;ReadPosRankSum=-0.507 GT:AD:DP:GQ:PL 0/0:27,0:27:63.17:0,63,743 0/0:29,0:29:72.20:0,72,849 0/0:25,0:25:69.19:0,69,818 0/0:101,0:101:99:0,265,3272 0/0:88,0:88:99:0,238,2977 0/0:78,0:79:99:0,199,2476 0/1:32,20:52:99:462,0,989 0/0:59,0:59:99:0,153,1930 0/0:32,0:32:90.25:0,90,1043 0/0:18,0:18:51.12:0,51,574 0/0:31,0:31:90.24:0,90,1052 0/0:30,0:30:66.18:0,66,792 0/0:22,0:22:60.17:0,60,716 0/0:28,0:28:72.20:0,72,854 0/0:88,0:88:99:0,217,2534 0/0:36,0:36:99:0,102,1184 0/0:27,0:27:78.21:0,78,896 0/0:25,1:26:27.05:0,27,684 0/0:36,0:36:96.21:0,96,1082 0/0:42,0:42:99:0,102,1203 0/0:40,0:40:96.24:0,96,1118 0/0:35,1:36:73.58:0,74,1085 0/0:104,0:104:99:0,289,3640 0/0:40,0:40:99:0,114,1409 0/0:58,0:58:99:0,150,1902 0/0:38,1:39:63.17:0,63,1170 0/0:21,0:21:57.11:0,57,625 0/0:18,0:18:51.12:0,51,568 0/0:21,0:21:63.18:0,63,731 0/0:22,0:22:60.17:0,60,702 0/0:32,0:32:87.24:0,87,1036 0/0:46,0:46:99:0,129,1517 0/0:34,0:34:90.26:0,90,1099 0/0:27,0:27:78.22:0,78,917 0/0:25,0:25:60.13:0,60,671 0/0:26,0:26:75.20:0,75,874 0/0:46,0:47:99:0,108,1225 0/0:27,0:27:69.18:0,69,819 0/0:37,0:37:87.26:0,87,1058 0/0:17,0:17:48.13:0,48,559 0/0:26,0:26:75.19:0,75,858 0/0:28,0:28:69.16:0,69,773 16 1584446 . G C 1965.61 . AC=6;AF=0.071;AN=84;BaseQRankSum=-3.254;DP=1440;Dels=0.00;FS=2.183;HRun=0;HaplotypeScore=1.2588;InbreedingCoeff=0.2820;MQ=58.77;MQ0=0;MQRankSum=0.786;QD=17.39;ReadPosRankSum=-2.274 GT:AD:DP:GQ:PL 0/0:31,0:31:81.20:0,81,967 0/1:11,10:21:99:226,0,303 1/1:0,23:23:60.16:704,60,0 0/0:94,0:94:99:0,277,3507 0/0:93,0:93:99:0,262,3305 0/0:59,0:59:99:0,162,2050 0/0:55,0:55:99:0,150,1946 0/0:60,0:60:99:0,169,2175 0/0:26,0:26:78.23:0,78,931 0/0:19,0:19:51.16:0,51,643 0/0:14,0:14:42.13:0,42,520 0/0:16,0:16:45.14:0,45,561 0/0:20,0:20:54.14:0,54,635 0/0:21,0:21:60.17:0,60,735 0/0:60,0:60:99:0,162,1954 0/0:34,0:34:99:0,99,1202 0/0:17,0:17:51.15:0,51,623 0/0:20,0:20:57.18:0,57,712 0/0:29,0:30:81.24:0,81,987 0/0:51,1:52:99:0,144,1824 0/0:32,0:33:81.22:0,81,968 0/1:17,10:27:99:298,0,522 0/0:99,0:99:99:0,286,3674 0/0:48,0:48:99:0,141,1813 0/0:66,0:66:99:0,190,2453 0/0:44,0:44:99:0,117,1523 0/0:20,0:20:57.17:0,57,688 0/0:21,0:21:63.18:0,63,766 0/0:14,0:14:36.10:0,36,432 0/0:20,0:20:57.18:0,57,711 0/0:25,0:25:69.15:0,69,821 0/0:32,0:32:93.26:0,93,1131 0/0:36,0:36:99:0,108,1339 0/1:9,11:20:99:323,0,178 0/0:15,0:15:45.14:0,45,564 0/1:4,18:22:92.48:527,0,92 0/0:23,0:23:66.20:0,66,809 0/0:20,0:20:60.16:0,60,723 0/0:28,0:28:75.23:0,75,918 0/0:24,0:24:69.21:0,69,857 0/0:15,0:15:45.12:0,45,511 0/0:21,0:23:57.18:0,57,729 16 1591962 . G A 10129.38 . AC=22;AF=0.262;AN=84;BaseQRankSum=-0.279;DP=1335;Dels=0.00;FS=6.440;HRun=0;HaplotypeScore=1.3964;InbreedingCoeff=-0.2317;MQ=58.41;MQ0=0;MQRankSum=-0.009;QD=15.03;ReadPosRankSum=-3.891 GT:AD:DP:GQ:PL 0/1:11,12:23:99:375,0,293 0/0:26,0:26:75.19:0,75,888 0/0:18,1:19:51.14:0,51,624 0/0:74,0:74:99:0,208,2673 0/1:30,40:71:99:1225,0,899 0/0:54,0:54:99:0,141,1818 0/1:27,14:41:99:358,0,767 0/0:48,0:48:99:0,135,1682 0/0:21,0:21:57.16:0,57,681 0/1:5,10:15:99:298,0,140 0/0:28,0:28:75.20:0,75,908 0/1:12,8:20:99:231,0,379 0/1:4,6:10:99:182,0,105 0/1:10,12:22:99:354,0,255 0/1:38,41:79:99:1153,0,1004 0/1:11,13:24:99:368,0,316 0/1:13,11:24:99:259,0,363 0/0:15,0:15:42.13:0,42,517 0/0:43,0:44:99:0,105,1251 0/0:53,0:53:99:0,144,1715 0/1:21,15:36:99:384,0,536 0/1:25,17:42:99:466,0,724 0/1:46,39:85:99:1189,0,1386 0/1:15,19:34:99:575,0,366 0/0:40,0:40:99:0,114,1437 0/1:8,13:21:99:418,0,231 0/0:24,0:24:66.19:0,66,798 0/0:24,0:24:69.20:0,69,823 0/0:15,0:15:42.12:0,42,518 1/1:0,27:27:72.23:897,72,0 0/1:9,13:22:99:410,0,231 0/0:43,1:44:88.61:0,89,1296 0/1:14,14:28:99:425,0,410 0/1:5,5:10:99:154,0,156 0/1:9,9:18:99:280,0,260 0/0:16,0:16:48.12:0,48,554 0/0:32,1:33:87.25:0,87,1048 0/0:16,0:16:48.13:0,48,561 0/0:25,0:25:69.19:0,69,814 0/0:18,0:19:54.12:0,54,617 0/0:23,0:23:57.16:0,57,683 0/1:17,5:22:99:128,0,501 16 1607975 . T C 7274.47 . AC=2;AF=0.024;AN=84;BaseQRankSum=20.282;DP=7361;DS;Dels=0.00;FS=31.902;HRun=1;HaplotypeScore=3.1444;InbreedingCoeff=-0.0244;MQ=59.51;MQ0=0;MQRankSum=-0.174;QD=14.76;ReadPosRankSum=0.275 GT:AD:DP:GQ:PL 0/0:165,0:165:99:0,442,5400 0/0:152,0:152:99:0,391,4793 0/0:119,0:119:99:0,343,4087 0/1:128,119:247:99:3738,0,3479 0/1:129,116:246:99:3536,0,3649 0/0:237,0:237:99:0,608,7676 0/0:193,0:193:99:0,512,6378 0/0:229,0:229:99:0,602,7436 0/0:153,0:153:99:0,418,5001 0/0:124,0:125:99:0,334,4004 0/0:169,0:169:99:0,451,5464 0/0:155,0:156:99:0,418,5064 0/0:147,0:147:99:0,379,4651 0/0:149,0:149:99:0,397,4821 0/0:250,0:250:99:0,698,8223 0/0:144,0:144:99:0,391,4751 0/0:120,0:120:99:0,322,3912 0/0:153,0:154:99:0,427,5136 0/0:232,1:234:99:0,608,7433 0/0:229,0:229:99:0,605,7384 0/0:233,0:234:99:0,575,7115 0/0:156,0:156:99:0,403,4956 0/0:246,0:246:99:0,632,7820 0/0:206,0:207:99:0,545,6718 0/0:244,0:244:99:0,617,7743 0/0:205,1:206:99:0,551,6795 0/0:125,0:125:99:0,337,4061 0/0:125,0:125:99:0,325,3979 0/0:144,0:144:99:0,391,4752 0/0:140,0:140:99:0,367,4492 0/0:122,0:122:99:0,328,4012 0/0:230,0:230:99:0,590,7239 0/0:156,0:156:99:0,412,4985 0/0:140,0:140:99:0,391,4734 0/0:131,0:132:99:0,361,4422 0/0:168,0:168:99:0,451,5487 0/0:238,0:239:99:0,602,7382 0/0:158,1:159:99:0,412,4991 0/0:125,0:126:99:0,328,4003 0/0:152,0:152:99:0,418,4985 0/0:138,0:139:99:0,391,4668 0/0:153,0:153:99:0,415,5055 16 1608082 . A G 41272.47 . AC=24;AF=0.286;AN=84;BaseQRankSum=15.169;DP=5645;DS;Dels=0.00;FS=3.775;HRun=3;HaplotypeScore=2.6335;InbreedingCoeff=-0.2833;MQ=59.43;MQ0=0;MQRankSum=0.647;QD=14.36;ReadPosRankSum=-2.821 GT:AD:DP:GQ:PL 0/1:52,59:111:99:1704,0,1483 0/0:89,0:89:99:0,250,3116 0/0:84,0:84:99:0,226,2858 0/0:250,0:250:99:0,665,8531 0/1:146,104:250:99:3116,0,4124 0/0:203,1:204:99:0,478,6821 0/1:101,55:156:99:1530,0,3099 0/0:201,1:202:99:0,530,6789 0/0:109,0:109:99:0,298,3719 0/1:48,50:98:99:1439,0,1371 0/0:89,2:91:99:0,176,2992 0/1:45,40:85:99:1238,0,1302 0/1:37,30:67:99:796,0,1129 0/1:46,52:98:99:1550,0,1269 0/1:128,118:247:99:3437,0,3520 0/1:57,47:104:99:1310,0,1744 0/1:35,43:78:99:1248,0,988 0/0:102,0:103:99:0,295,3633 0/0:213,1:215:99:0,581,7263 0/0:220,0:220:99:0,578,7242 0/1:88,75:163:99:2004,0,2298 0/1:59,65:124:99:1911,0,1652 0/1:132,106:238:99:3248,0,4016 0/1:88,65:153:99:1802,0,2540 0/0:216,0:217:99:0,557,7207 0/1:97,69:166:99:2068,0,2874 0/0:73,0:73:99:0,205,2542 0/0:74,0:74:99:0,205,2563 0/0:99,0:99:99:0,274,3443 1/1:1,84:85:99:2982,210,0 0/1:41,40:81:99:1243,0,1172 0/0:229,0:230:99:0,602,7542 0/1:54,69:123:99:1968,0,1508 0/1:35,54:89:99:1665,0,980 0/1:41,47:88:99:1415,0,1133 0/0:99,1:100:99:0,251,3382 0/0:216,0:216:99:0,560,7014 0/0:104,0:104:99:0,289,3562 0/0:91,0:91:99:0,253,3159 0/1:42,46:88:99:1321,0,1296 0/1:45,39:84:99:1106,0,1377 0/1:54,43:97:99:1174,0,1670 16 1614097 . A G 16404.66 . AC=29;AF=0.345;AN=84;BaseQRankSum=3.883;DP=1952;Dels=0.00;FS=1.961;HRun=0;HaplotypeScore=0.9890;InbreedingCoeff=-0.1060;MQ=59.15;MQ0=0;MQRankSum=3.267;QD=14.52;ReadPosRankSum=0.884 GT:AD:DP:GQ:PL 0/1:19,24:43:99:558,0,537 0/1:20,18:39:99:444,0,589 1/1:0,36:37:99:1094,99,0 0/0:103,0:103:99:0,274,3187 0/1:57,39:97:99:1141,0,1623 0/0:61,0:61:99:0,178,2139 0/1:33,27:60:99:722,0,835 0/0:62,0:63:99:0,177,2039 0/0:30,0:30:81.20:0,81,950 0/1:14,13:27:99:372,0,359 0/0:21,0:21:60.18:0,60,711 0/1:14,17:31:99:368,0,382 0/1:19,10:29:99:223,0,551 0/1:23,18:42:99:485,0,620 0/1:63,37:101:99:925,0,1745 0/1:19,17:36:99:422,0,532 0/1:20,20:40:99:534,0,522 0/0:27,0:27:75.22:0,75,902 0/0:58,0:59:99:0,162,1892 0/0:74,2:78:99:0,205,2393 0/1:33,25:58:99:571,0,917 1/1:0,37:37:99:1192,102,0 0/1:48,58:106:99:1815,0,1285 0/1:21,25:47:99:728,0,505 0/0:67,0:68:99:0,183,2145 0/1:22,37:59:99:1143,0,542 0/0:32,0:32:84.23:0,84,981 0/0:42,0:42:99:0,120,1435 0/0:26,0:26:69.18:0,69,803 1/1:0,29:30:69.17:799,69,0 0/1:10,11:21:99:296,0,275 0/0:61,0:62:99:0,159,1893 0/1:29,23:52:99:591,0,776 1/1:0,19:19:54.15:636,54,0 0/1:14,15:29:99:351,0,296 0/1:15,14:29:99:350,0,413 0/0:63,0:63:99:0,172,2065 0/1:18,14:32:99:329,0,532 0/0:32,0:32:93.27:0,93,1095 0/0:31,0:31:87.25:0,87,1018 0/0:24,0:24:72.17:0,72,825 0/1:15,14:29:99:316,0,447 16 1637998 . G A 83.85 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.084;DP=888;Dels=0.00;FS=2.044;HRun=0;HaplotypeScore=0.9289;InbreedingCoeff=-0.0122;MQ=58.96;MQ0=0;MQRankSum=1.688;QD=9.32;ReadPosRankSum=1.214 GT:AD:DP:GQ:PL 0/0:17,0:17:48.13:0,48,556 0/0:23,0:23:60.16:0,60,701 0/0:16,0:16:45.13:0,45,530 0/0:24,0:24:63.19:0,63,794 0/0:24,0:24:57.18:0,57,730 0/0:10,0:10:21.07:0,21,286 0/1:5,4:9:99:130,0,131 0/0:15,0:15:36.11:0,36,462 0/0:17,0:17:48.14:0,48,580 0/0:11,0:11:27.08:0,27,338 0/0:13,0:13:36.10:0,36,413 0/0:42,0:42:99:0,99,1216 0/0:23,0:23:57.15:0,57,671 0/0:15,0:15:39.12:0,39,472 0/0:66,0:66:99:0,168,1999 0/0:20,0:20:57.16:0,57,673 0/0:24,0:24:54.16:0,54,669 0/0:21,0:21:54.14:0,54,635 0/0:30,0:30:78.20:0,78,895 0/0:34,0:34:75.22:0,75,920 0/0:33,0:33:87.25:0,87,1052 0/0:14,0:14:36.08:0,36,404 0/0:39,0:39:90.28:0,90,1182 0/0:13,0:13:36.12:0,36,471 0/0:15,0:15:39.12:0,39,504 0/0:25,0:25:60.19:0,60,795 0/0:10,0:10:30.08:0,30,340 0/0:25,0:25:57.15:0,57,668 0/0:17,0:17:45.09:0,45,508 0/0:12,0:12:33.10:0,33,392 0/0:16,0:16:48.13:0,48,548 0/0:25,0:25:54.16:0,54,674 0/0:13,0:13:33.09:0,33,398 0/0:22,0:22:60.16:0,60,690 0/0:13,0:13:39.11:0,39,459 0/0:19,0:19:48.13:0,48,564 0/0:38,0:38:90.25:0,90,1082 0/0:13,0:13:30.09:0,30,382 0/0:18,0:18:45.13:0,45,550 0/0:17,0:17:51.13:0,51,594 0/0:22,0:22:54.12:0,54,625 0/0:15,0:15:39.10:0,39,435 16 1638000 . C G 1799.64 . AC=7;AF=0.083;AN=84;BaseQRankSum=3.118;DP=895;Dels=0.00;FS=2.750;HRun=2;HaplotypeScore=0.8767;InbreedingCoeff=-0.0911;MQ=58.94;MQ0=0;MQRankSum=1.821;QD=11.25;ReadPosRankSum=-0.065 GT:AD:DP:GQ:PL 0/0:18,0:18:48.12:0,48,565 0/0:22,0:22:60.17:0,60,724 0/0:15,0:15:39.11:0,39,466 0/0:27,0:27:66.17:0,66,811 0/0:23,0:23:57.18:0,57,761 0/0:9,0:9:21.06:0,21,273 0/0:9,0:9:24.08:0,24,325 0/0:15,0:15:36.10:0,36,456 0/1:8,10:18:99:311,0,144 0/1:5,6:11:99:162,0,118 0/0:11,0:11:33.07:0,33,363 0/0:43,0:43:99:0,99,1234 0/0:24,0:24:57.15:0,57,709 0/0:12,0:13:33.10:0,33,398 0/1:39,26:65:99:658,0,1019 0/1:13,7:20:99:194,0,383 0/0:23,1:24:34.46:0,34,654 0/0:20,0:21:51.14:0,51,613 0/0:30,0:30:81.25:0,81,1003 0/0:33,0:33:81.24:0,81,1003 0/0:33,0:33:87.25:0,87,1044 0/0:15,0:15:39.11:0,39,469 0/0:38,0:39:90.29:0,90,1187 0/0:13,0:13:36.11:0,36,456 0/0:15,0:15:36.11:0,36,462 0/0:25,0:25:60.19:0,60,776 0/1:5,6:11:99:161,0,120 0/0:23,0:23:57.16:0,57,687 0/1:9,9:18:99:251,0,241 0/0:12,0:12:36.08:0,36,395 0/1:11,6:17:99:177,0,328 0/0:25,0:25:54.15:0,54,666 0/0:15,0:15:36.11:0,36,452 0/0:25,0:25:63.16:0,63,725 0/0:14,0:14:36.10:0,36,425 0/0:18,0:18:45.12:0,45,527 0/0:38,0:38:96.26:0,96,1153 0/0:13,0:13:33.09:0,33,383 0/0:19,0:19:48.14:0,48,589 0/0:18,0:18:54.14:0,54,614 0/0:22,0:22:54.13:0,54,644 0/0:16,0:16:42.12:0,42,489 16 1703061 . CAGTGCG C 81.02 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.825;DP=435;FS=131.534;HRun=0;HaplotypeScore=56.7117;InbreedingCoeff=-0.0645;MQ=58.01;MQ0=0;MQRankSum=-0.131;QD=3.12;ReadPosRankSum=-7.762 GT:AD:DP:GQ:PL 0/0:6,0:6:3.07:0,3,497 0/0:6,0:6:18.06:0,18,641 0/0:5,0:5:0.27:12,0,372 0/0:18,0:18:51.17:0,51,1624 0/1:13,13:26:99:133,0,1405 0/0:10,0:8:27.09:0,27,939 0/0:8,0:8:21.07:0,21,671 0/0:13,0:13:30.07:0,30,897 0/0:4,0:3:9.03:0,9,290 0/0:11,0:11:33.11:0,33,1207 0/0:10,0:10:30.10:0,30,918 0/0:8,0:8:21.04:0,21,527 0/0:7,0:7:0.05:0,0,330 0/0:3,0:3:9.03:0,9,329 0/0:27,0:27:70.21:0,70,2567 0/0:7,0:7:21.07:0,21,740 0/0:8,0:8:12.10:0,12,696 0/0:4,0:4:5.03:0,5,271 0/0:14,0:14:32.45:0,32,981 0/0:14,0:14:39.13:0,39,1175 0/0:9,0:9:24.08:0,24,720 0/0:15,0:15:30.16:0,30,1205 0/0:18,0:18:6.19:0,6,1612 0/0:10,0:10:24.08:0,24,840 0/0:10,0:10:2.09:0,2,804 0/0:14,0:13:35.15:0,35,1168 0/0:4,0:4:12.04:0,12,389 0/0:11,0:11:30.10:0,30,1073 0/0:8,0:8:17.42:0,17,425 0/0:15,0:15:42.14:0,42,1446 0/0:10,0:10:19.04:0,19,765 0/0:18,0:18:45.15:0,45,1401 0/0:11,0:11:30.10:0,30,934 0/0:5,0:5:9.11:0,9,393 0/0:8,0:8:0.53:9,0,451 0/0:9,0:9:24.08:0,24,756 0/0:13,0:13:39.13:0,39,1322 0/0:7,0:7:18.04:0,18,495 0/0:4,0:4:12.03:0,12,183 0/0:8,0:8:24.08:0,24,776 0/0:11,0:11:33.11:0,33,1138 0/0:8,0:8:24.08:0,24,771 16 1703065 . G C 9.90 . AC=4;AF=0.049;AN=82;BaseQRankSum=-4.595;DP=509;Dels=0.03;FS=74.555;HRun=1;HaplotypeScore=1.4502;InbreedingCoeff=-0.1168;MQ=58.35;MQ0=0;MQRankSum=-0.329;QD=0.28;ReadPosRankSum=-4.814 GT:AD:DP:GQ:PL 0/1:5,2:7:40.22:40,0,128 0/0:6,1:7:18.06:0,18,226 0/0:5,0:5:9.03:0,9,112 0/0:15,3:18:33.09:0,33,398 0/0:13,0:13:39.13:0,39,508 0/0:11,3:14:27.09:0,27,362 0/0:6,2:8:15.04:0,15,183 0/0:12,5:17:24.07:0,24,291 0/0:4,3:7:9.03:0,9,111 0/0:12,0:12:33.11:0,33,415 0/0:8,2:10:24.07:0,24,290 0/0:5,2:7:12.03:0,12,139 0/0:6,2:8:12.04:0,12,145 0/0:3,2:5:6.02:0,6,75 0/0:30,6:36:72.22:0,72,888 0/0:7,2:9:21.07:0,21,263 0/0:8,1:9:0.46:10,0,205 0/0:5,2:7:6.02:0,6,78 0/0:11,2:13:27.08:0,27,324 0/0:14,2:16:36.10:0,36,427 0/1:9,3:12:10.71:11,0,271 0/0:15,0:15:36.11:0,36,449 0/0:17,5:22:45.13:0,45,567 0/0:11,0:11:24.07:0,24,310 0/0:10,3:13:24.08:0,24,309 0/0:15,1:16:1.74:0,2,365 0/0:4,0:4:9.03:0,9,110 0/0:13,0:13:21.06:0,21,261 0/0:6,0:6:12.03:0,12,138 0/0:15,3:18:39.12:0,39,482 0/1:8,4:12:10.50:10,0,192 0/0:16,4:20:36.11:0,36,446 0/0:10,3:13:27.07:0,27,319 0/1:4,1:5:20.46:20,0,100 0/0:7,2:9:12.04:0,12,151 0/0:8,3:11:21.06:0,21,249 0/0:12,4:16:5.52:0,6,393 0/0:8,3:11:1.05:6,0,197 ./. 0/0:8,4:12:1.92:3,0,271 0/0:12,5:17:36.11:0,36,439 0/0:8,2:10:1.33:4,0,269 16 1703067 . G C 1994.98 . AC=37;AF=0.440;AN=84;BaseQRankSum=-0.824;DP=595;Dels=0.02;FS=670.943;HRun=2;HaplotypeScore=2.0240;InbreedingCoeff=-0.6984;MQ=58.50;MQ0=0;MQRankSum=0.465;QD=3.83;ReadPosRankSum=-13.380 GT:AD:DP:GQ:PL 0/1:5,3:8:41.44:41,0,141 0/1:6,5:11:40.94:41,0,158 0/1:3,1:4:22.55:23,0,46 0/1:13,9:22:2:2,0,298 0/0:13,0:13:36.10:0,36,410 0/1:8,8:16:77.81:78,0,255 0/0:5,5:10:6.36:0,6,124 0/1:8,12:20:99:127,0,136 0/1:2,6:8:57.44:62,0,57 0/0:11,6:17:0.58:0,1,291 0/1:7,4:11:44.02:44,0,191 0/1:4,4:8:44.08:44,0,111 0/1:4,4:8:21.57:22,0,56 0/1:3,8:11:48.08:56,0,48 0/1:26,15:41:72.30:72,0,648 0/1:6,5:11:46.81:47,0,165 0/1:7,4:11:21.99:22,0,139 0/1:2,8:10:48.94:86,0,49 0/1:7,5:13:14.20:14,0,169 0/1:9,8:17:34.40:34,0,226 0/1:8,8:16:99:167,0,210 0/1:9,8:17:28.06:28,0,229 0/1:13,12:25:99:127,0,334 0/1:7,6:13:12.91:13,0,212 0/1:7,8:15:7.68:8,0,189 0/1:10,11:21:91.21:91,0,257 0/0:3,2:5:9.02:0,9,96 0/1:11,5:16:8.18:8,0,239 0/0:6,1:7:15.02:0,15,143 0/1:13,5:19:26.08:26,0,347 0/1:8,8:16:37.66:38,0,156 0/1:13,12:25:99:135,0,240 0/1:8,7:15:76.35:76,0,165 0/1:3,4:7:22.33:22,0,77 0/1:4,8:12:92.42:92,0,100 0/1:6,4:10:70.33:70,0,159 0/1:11,6:17:99:138,0,279 0/1:6,7:13:48.10:59,0,48 1/1:0,5:5:9.03:104,9,0 0/1:6,6:12:63.73:64,0,138 0/1:11,6:17:82.90:83,0,273 0/0:6,3:9:18.05:0,18,195 16 1823444 . C G 3476.68 . AC=51;AF=0.622;AN=82;BaseQRankSum=1.530;DP=175;Dels=0.00;FS=1.234;HRun=0;HaplotypeScore=0.2033;InbreedingCoeff=0.1405;MQ=57.15;MQ0=0;MQRankSum=1.411;QD=25.56;ReadPosRankSum=2.066 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:71,6,0 0/1:0,1:1:1.76:37,3,0 0/0:2,0:2:6.02:0,6,78 0/1:7,11:18:99:373,0,147 0/0:7,0:7:21.07:0,21,267 1/1:0,12:12:33.10:416,33,0 0/1:3,3:6:97.10:101,0,97 1/1:0,5:5:15.05:195,15,0 0/0:2,0:2:6.02:0,6,78 0/0:3,0:3:9.03:0,9,107 1/1:0,3:3:9.03:111,9,0 0/1:1,2:3:27.95:55,0,28 0/1:1,1:2:32.56:33,0,33 0/1:1,1:2:31.78:32,0,33 0/0:12,0:12:36.11:0,36,440 0/0:2,0:2:6.02:0,6,76 0/0:2,0:2:3.01:0,3,39 1/1:0,2:2:6.02:77,6,0 1/1:0,2:2:6.02:76,6,0 0/0:8,0:8:24.07:0,24,282 0/1:3,3:6:25.33:62,0,25 1/1:0,9:9:27.09:337,27,0 0/1:6,7:13:99:210,0,193 1/1:0,5:5:12.04:165,12,0 0/1:6,1:7:20.16:20,0,218 1/1:0,2:2:6.02:82,6,0 0/1:1,1:2:27.42:28,0,27 0/1:1,2:3:22.52:63,0,23 0/0:1,0:1:2.98:0,3,22 1/1:0,2:2:6.02:77,6,0 0/1:1,2:3:29.55:59,0,30 1/1:0,4:4:9.03:104,9,0 1/1:0,4:4:12.04:144,12,0 1/1:0,4:4:12.03:133,12,0 1/1:0,1:2:3.01:39,3,0 1/1:0,3:3:9.03:117,9,0 1/1:0,1:1:3.01:39,3,0 0/1:1,2:3:28.77:68,0,29 ./. 1/1:0,3:3:6.02:76,6,0 1/1:0,1:1:3.01:39,3,0 1/1:0,1:1:3.01:39,3,0 16 1869907 . G A 219.14 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.306;DP=1197;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.6818;InbreedingCoeff=-0.0121;MQ=58.55;MQ0=0;MQRankSum=-0.716;QD=13.70;ReadPosRankSum=1.798 GT:AD:DP:GQ:PL 0/0:22,0:22:60.19:0,60,762 0/0:26,0:26:72.20:0,72,897 0/0:23,0:23:66.20:0,66,832 0/0:38,0:38:99:0,108,1445 0/0:38,0:38:99:0,108,1459 0/0:31,0:31:81.27:0,81,1132 0/1:7,9:16:99:265,0,234 0/0:26,0:26:78.24:0,78,1017 0/0:26,0:26:75.22:0,75,940 0/0:21,0:21:60.18:0,60,745 0/0:24,0:24:69.22:0,69,890 0/0:33,0:33:96.29:0,96,1211 0/0:10,0:10:30.09:0,30,376 0/0:31,0:31:81.26:0,81,1051 0/0:75,0:75:99:0,211,2623 0/0:14,0:14:39.13:0,39,502 0/0:23,0:23:69.22:0,69,873 0/0:25,0:25:66.21:0,66,849 0/0:47,0:47:99:0,120,1558 0/0:44,0:44:99:0,120,1541 0/0:51,0:51:99:0,141,1784 0/0:32,0:32:93.29:0,93,1174 0/0:47,0:47:99:0,132,1775 0/0:30,0:30:87.28:0,87,1164 0/0:25,0:25:69.22:0,69,911 0/0:30,0:30:84.27:0,84,1129 0/0:19,0:19:54.17:0,54,692 0/0:23,0:23:66.21:0,66,829 0/0:12,0:12:36.11:0,36,456 0/0:17,0:17:48.15:0,48,606 0/0:18,0:18:54.17:0,54,678 0/0:61,0:61:99:0,150,1945 0/0:27,0:27:81.26:0,81,1018 0/0:17,0:17:45.14:0,45,578 0/0:28,0:28:81.25:0,81,1021 0/0:33,0:33:96.30:0,96,1217 0/0:37,0:38:93.27:0,93,1192 0/0:13,0:13:39.12:0,39,476 0/0:25,0:25:69.18:0,69,836 0/0:25,0:25:69.22:0,69,889 0/0:16,0:16:48.15:0,48,600 0/0:17,0:17:48.16:0,48,623 16 1869949 . G A 446.94 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.536;DP=1477;Dels=0.00;FS=4.026;HRun=0;HaplotypeScore=1.1950;InbreedingCoeff=-0.0121;MQ=58.55;MQ0=0;MQRankSum=-0.781;QD=18.62;ReadPosRankSum=0.505 GT:AD:DP:GQ:PL 0/0:31,0:31:84.21:0,84,922 0/0:28,0:28:84.18:0,84,910 0/0:25,0:25:69.15:0,69,735 0/0:59,0:59:99:0,165,1917 0/0:48,0:48:99:0,138,1604 0/0:36,0:36:99:0,105,1215 0/0:31,0:31:93.25:0,93,1071 0/0:44,0:44:99:0,114,1318 0/0:31,0:31:84.20:0,84,917 0/0:24,1:25:30.91:0,31,640 0/0:33,0:33:93.20:0,93,1011 0/0:28,0:28:72.20:0,72,830 0/0:17,0:17:48.13:0,48,538 0/0:23,0:23:69.17:0,69,760 0/0:92,0:92:99:0,256,2782 0/0:23,0:23:66.17:0,66,716 0/0:33,0:33:93.22:0,93,1003 0/0:24,0:24:69.15:0,69,738 0/0:38,0:38:99:0,105,1143 0/0:47,0:47:99:0,132,1468 0/0:53,0:54:99:0,138,1505 0/0:38,0:38:99:0,108,1170 0/0:59,0:59:99:0,174,2047 0/0:38,1:39:78.83:0,79,1276 0/0:35,0:35:99:0,102,1202 0/0:42,0:42:99:0,120,1436 0/0:28,0:28:81.18:0,81,882 0/0:24,0:24:69.15:0,69,749 0/1:8,16:24:99:493,0,160 0/0:36,0:36:96.24:0,96,1051 0/0:30,0:30:78.21:0,78,897 0/0:50,0:51:99:0,141,1531 0/0:37,0:37:99:0,102,1099 0/0:29,0:29:84.22:0,84,942 0/0:41,0:41:99:0,114,1268 0/0:25,0:25:75.19:0,75,825 0/0:35,0:35:99:0,102,1135 0/0:35,0:35:99:0,105,1110 0/0:21,0:21:57.11:0,57,593 0/0:32,0:32:84.20:0,84,933 0/0:25,0:25:69.17:0,69,741 0/0:21,0:21:57.15:0,57,645 16 1894912 . C T 9214.03 . AC=24;AF=0.286;AN=84;BaseQRankSum=1.976;DP=1243;Dels=0.00;FS=6.587;HRun=2;HaplotypeScore=0.2461;InbreedingCoeff=-0.0500;MQ=59.46;MQ0=0;MQRankSum=1.205;QD=14.67;ReadPosRankSum=0.564 GT:AD:DP:GQ:PL 0/0:28,0:28:69.20:0,69,859 0/0:30,0:30:75.23:0,75,939 0/0:26,0:26:69.20:0,69,843 0/0:36,0:36:81.26:0,81,1071 0/0:27,0:27:75.25:0,75,1003 0/0:33,0:34:84.27:0,84,1107 0/1:20,11:31:99:275,0,653 0/0:28,0:28:78.20:0,78,973 0/1:18,12:30:99:301,0,532 1/1:0,27:27:69.21:864,69,0 0/0:34,0:34:93.27:0,93,1117 0/1:24,19:43:99:532,0,609 0/1:18,12:30:99:332,0,466 0/1:16,9:25:99:204,0,450 1/1:0,82:82:99:2350,181,0 0/1:14,5:19:99:128,0,398 0/1:15,12:27:99:346,0,375 0/0:26,0:26:66.19:0,66,808 0/0:41,0:41:99:0,102,1243 0/1:21,7:28:99:167,0,519 0/1:24,13:37:99:384,0,643 0/0:30,0:30:81.24:0,81,978 0/1:14,12:26:99:321,0,387 0/0:18,0:18:45.15:0,45,615 0/1:12,15:27:99:471,0,285 0/1:17,6:23:99:160,0,555 0/1:17,5:22:94.15:94,0,535 0/0:35,0:35:93.26:0,93,1102 0/1:13,9:22:99:242,0,373 0/0:25,0:25:60.18:0,60,753 0/1:17,12:29:99:316,0,437 0/1:8,10:18:99:289,0,205 0/0:28,0:28:69.20:0,69,849 0/0:33,0:33:90.25:0,90,1063 0/0:28,0:28:69.21:0,69,864 0/0:19,0:19:54.16:0,54,637 0/0:40,0:40:99:0,99,1213 0/1:19,8:27:99:221,0,506 0/0:27,0:27:75.22:0,75,907 0/1:14,14:28:99:350,0,414 0/0:22,0:22:54.16:0,54,664 1/1:0,27:27:69.21:867,69,0 16 1894961 . A G 4096.41 . 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C T 1162.31 . 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G C 781.62 . 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G C 8726.25 . 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C A 2259.92 . 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C T 425.20 . 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C T 838.84 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.018;DP=1372;Dels=0.00;FS=2.357;HRun=1;HaplotypeScore=1.2328;InbreedingCoeff=-0.0244;MQ=58.83;MQ0=0;MQRankSum=0.301;QD=13.75;ReadPosRankSum=-1.613 GT:AD:DP:GQ:PL 0/0:25,0:25:75.23:0,75,941 0/0:23,0:23:57.17:0,57,716 0/0:19,0:19:54.17:0,54,684 0/0:55,0:55:99:0,160,2116 0/0:66,0:66:99:0,193,2518 0/0:37,0:37:99:0,108,1438 0/0:18,0:18:51.16:0,51,666 0/0:28,0:28:78.24:0,78,1008 0/0:25,0:25:75.23:0,75,930 0/0:13,0:13:39.12:0,39,483 0/0:26,0:27:78.24:0,78,983 0/0:9,0:10:27.08:0,27,326 0/0:19,0:19:54.17:0,54,694 0/0:23,0:23:66.20:0,66,830 0/0:87,0:88:99:0,247,3082 0/0:41,0:41:99:0,114,1442 0/0:26,0:26:78.24:0,78,978 0/0:19,0:19:51.15:0,51,621 0/0:52,0:52:99:0,138,1744 0/0:56,0:56:99:0,165,2027 0/0:54,0:54:99:0,156,1980 0/0:41,0:41:99:0,111,1397 0/0:75,0:75:99:0,214,2867 0/0:29,0:29:84.27:0,84,1126 0/0:47,0:47:99:0,123,1672 0/0:32,0:32:96.31:0,96,1273 0/0:16,0:16:45.14:0,45,560 0/0:19,0:19:54.17:0,54,675 0/0:22,0:22:63.19:0,63,790 0/1:11,10:21:99:269,0,300 0/0:24,0:24:66.20:0,66,838 0/0:63,0:63:99:0,178,2258 0/1:18,22:40:99:632,0,501 0/0:19,0:19:57.18:0,57,710 0/0:25,0:25:75.23:0,75,932 0/0:20,0:20:60.18:0,60,729 0/0:47,0:47:99:0,132,1647 0/0:22,0:22:63.20:0,63,798 0/0:15,0:15:45.15:0,45,579 0/0:23,0:23:66.21:0,66,828 0/0:18,0:18:51.16:0,51,632 0/0:30,0:30:87.28:0,87,1102 16 2028677 . A G 4832.27 . AC=10;AF=0.119;AN=84;BaseQRankSum=-9.740;DP=1963;Dels=0.00;FS=0.345;HRun=0;HaplotypeScore=2.8457;InbreedingCoeff=0.0919;MQ=57.88;MQ0=0;MQRankSum=3.245;QD=12.62;ReadPosRankSum=-1.456 GT:AD:DP:GQ:PL 0/0:24,1:26:72.22:0,72,867 0/0:36,0:36:93.27:0,93,1094 0/0:36,0:36:99:0,102,1196 0/0:130,0:137:99:0,367,4303 0/0:100,0:102:99:0,280,3294 0/1:35,24:60:99:620,0,917 0/0:54,0:57:99:0,150,1817 0/1:32,32:66:99:797,0,877 0/0:21,0:22:57.15:0,57,644 0/1:16,9:25:99:202,0,471 0/0:30,0:30:90.27:0,90,1061 1/1:1,22:23:63.10:653,63,0 0/1:11,14:25:99:375,0,311 0/1:11,13:24:99:377,0,218 0/0:109,0:111:99:0,307,3557 0/0:33,0:33:87.26:0,87,1043 0/0:29,0:30:78.20:0,78,913 0/0:25,0:26:72.18:0,72,826 0/0:52,1:55:99:0,144,1748 0/1:32,35:73:99:827,0,898 0/0:58,0:59:99:0,171,2013 0/0:42,0:43:99:0,120,1402 0/0:133,1:140:99:0,379,4461 0/0:62,1:65:99:0,139,1922 0/0:81,1:85:99:0,217,2497 0/0:73,0:75:99:0,202,2403 0/0:17,0:18:51.14:0,51,591 0/0:27,0:28:72.18:0,72,829 0/0:27,0:29:72.19:0,72,848 0/0:21,0:22:60.13:0,60,683 0/0:37,0:37:99:0,99,1163 0/0:46,2:51:99:0,129,1526 0/0:40,0:40:99:0,108,1228 0/0:15,1:17:45.11:0,45,518 0/0:24,0:24:66.19:0,66,786 0/0:29,0:31:81.24:0,81,964 0/1:28,31:62:99:790,0,692 0/0:37,0:37:99:0,111,1275 0/1:17,8:25:99:190,0,496 0/0:23,0:24:63.19:0,63,760 0/0:29,0:29:78.23:0,78,917 0/0:25,0:25:66.20:0,66,801 16 2049000 . C A 18.63 . AC=2;AF=0.025;AN=80;BaseQRankSum=-0.970;DP=176;Dels=0.00;FS=7.410;HRun=1;HaplotypeScore=0.2894;InbreedingCoeff=-0.0841;MQ=58.37;MQ0=0;MQRankSum=0.608;QD=1.86;ReadPosRankSum=-1.464 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,76 0/0:3,0:3:9.01:0,9,98 0/0:2,0:2:6.02:0,6,76 0/0:6,0:6:18.06:0,18,234 0/0:3,0:3:9.03:0,9,124 0/0:3,0:3:9.02:0,9,104 0/0:5,0:5:15.05:0,15,206 0/0:3,0:3:9.03:0,9,116 0/0:2,0:2:6.02:0,6,70 0/0:2,0:2:6.01:0,6,66 0/0:2,0:2:3.01:0,3,37 0/0:4,0:4:12.04:0,12,150 0/0:4,0:4:9.03:0,9,108 0/0:4,0:4:12.04:0,12,152 0/0:11,0:11:33.10:0,33,389 0/0:9,0:9:27.09:0,27,343 0/0:4,0:4:9.03:0,9,109 ./. 0/0:5,0:5:12.01:0,12,123 0/0:9,0:9:24.07:0,24,289 0/0:4,0:4:12.04:0,12,151 0/0:5,0:5:15.05:0,15,190 0/0:11,0:11:27.08:0,27,329 0/0:1,0:1:3.01:0,3,34 0/0:2,0:2:3.01:0,3,39 0/0:3,0:3:9.03:0,9,110 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.03:0,9,115 0/0:4,0:4:12.04:0,12,148 0/0:2,0:2:6.02:0,6,73 0/0:2,0:2:6.02:0,6,75 0/1:4,1:5:17.45:17,0,133 0/0:6,0:6:15.03:0,15,164 0/0:2,0:2:6.02:0,6,78 0/0:4,0:4:9:0,9,98 ./. 0/0:10,0:10:30.09:0,30,372 0/0:6,0:6:15.04:0,15,181 0/0:5,0:5:15.04:0,15,174 0/1:3,2:5:59.73:60,0,102 0/0:6,0:6:18.05:0,18,214 0/0:6,0:6:18.06:0,18,228 16 2049003 . A T 416.79 . AC=10;AF=0.132;AN=76;BaseQRankSum=0.404;DP=169;Dels=0.00;FS=2.504;HRun=0;HaplotypeScore=0.3337;InbreedingCoeff=0.1674;MQ=58.44;MQ0=0;MQRankSum=0.120;QD=13.44;ReadPosRankSum=1.775 GT:AD:DP:GQ:PL 0/1:0,2:2:0.97:73,6,0 0/0:3,0:3:9:0,9,95 0/0:2,0:2:6.02:0,6,78 0/0:8,0:8:21.06:0,21,259 0/1:2,1:3:27.95:28,0,63 0/0:3,0:3:9.02:0,9,96 0/0:5,0:5:15.04:0,15,179 0/0:3,0:3:6.02:0,6,71 ./. 0/0:2,0:2:6.02:0,6,70 0/0:2,0:2:3.01:0,3,37 0/0:4,0:4:12.04:0,12,144 0/0:3,0:3:6.02:0,6,70 0/0:4,0:4:12.03:0,12,137 0/0:10,0:10:27.08:0,27,330 0/0:8,0:8:24.08:0,24,300 0/0:4,0:4:9.02:0,9,104 ./. 0/0:5,0:5:15.04:0,15,180 0/0:9,0:9:24.04:0,24,276 0/0:4,0:4:12.04:0,12,148 0/0:5,0:5:15.05:0,15,181 0/0:9,0:10:21.05:0,21,254 ./. 0/1:0,2:2:1.76:37,3,0 0/1:1,2:3:28.77:67,0,29 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.03:0,9,113 0/0:3,0:3:9.03:0,9,111 0/1:1,1:2:30.96:31,0,32 0/0:2,0:2:6.02:0,6,74 0/0:5,0:5:15.05:0,15,193 0/1:2,4:6:55.87:122,0,56 1/1:0,2:2:6.02:75,6,0 0/0:2,0:3:6.01:0,6,66 ./. 0/0:10,0:10:30.09:0,30,364 0/0:5,0:6:15.04:0,15,179 0/0:5,0:5:15.05:0,15,183 0/1:2,3:5:61.25:96,0,61 0/0:5,0:5:15.05:0,15,182 0/1:5,1:6:20.52:21,0,172 16 2051014 . C T 71.61 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.224;DP=259;Dels=0.00;FS=5.120;HRun=2;HaplotypeScore=0.1020;InbreedingCoeff=-0.0418;MQ=57.74;MQ0=0;MQRankSum=1.508;QD=14.32;ReadPosRankSum=-0.261 GT:AD:DP:GQ:PL 0/0:4,0:4:9.03:0,9,115 0/0:8,0:8:18.06:0,18,240 0/1:1,4:5:18.40:117,0,18 0/0:14,0:14:36.12:0,36,483 0/0:9,0:9:27.09:0,27,355 0/0:2,0:2:6.02:0,6,83 0/0:2,0:2:6.02:0,6,83 0/0:4,0:4:12.04:0,12,153 0/0:3,0:3:9.02:0,9,98 0/0:8,0:8:21.07:0,21,264 0/0:5,0:5:15.03:0,15,177 0/0:3,0:3:9.03:0,9,106 0/0:5,0:5:12.04:0,12,152 0/0:10,0:10:27.08:0,27,321 0/0:14,0:14:42.10:0,42,456 0/0:12,0:12:33.10:0,33,392 0/0:7,0:7:21.06:0,21,257 0/0:6,0:6:18.05:0,18,207 0/0:12,0:12:36.08:0,36,408 0/0:10,0:10:30.08:0,30,338 0/0:5,0:5:15.04:0,15,161 0/0:3,0:3:9.02:0,9,103 0/0:7,0:7:18.06:0,18,230 0/0:3,0:3:9.03:0,9,114 0/0:7,0:7:18.06:0,18,240 0/0:2,0:2:3:0,3,27 0/0:8,0:8:24.07:0,24,293 0/0:7,0:7:18.05:0,18,213 0/0:3,0:3:9.02:0,9,100 0/0:7,0:7:18.05:0,18,213 0/0:1,0:1:3.01:0,3,37 0/0:5,0:5:12.04:0,12,156 0/0:3,0:3:9.03:0,9,105 0/0:5,0:5:15.05:0,15,184 0/0:8,0:8:18.03:0,18,214 0/0:1,0:1:3.01:0,3,38 0/0:13,0:13:30.07:0,30,355 0/0:2,0:2:3.01:0,3,45 0/0:6,0:6:15.05:0,15,194 0/0:7,0:7:18.05:0,18,222 0/0:7,0:7:18.05:0,18,218 0/0:6,0:6:18.04:0,18,214 16 2051060 . T A 80.09 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.870;DP=365;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2406;InbreedingCoeff=-0.0345;MQ=57.94;MQ0=0;MQRankSum=0.866;QD=8.01;ReadPosRankSum=-2.442 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,67 0/0:11,0:11:30.09:0,30,349 0/0:6,0:6:18.05:0,18,214 0/0:19,0:19:54.16:0,54,636 0/0:17,0:17:48.12:0,48,542 0/0:10,0:11:27.08:0,27,314 0/0:8,0:8:24.06:0,24,268 0/0:10,0:10:30.08:0,30,333 0/0:8,0:8:24.03:0,24,243 0/0:9,0:9:27.08:0,27,317 0/0:11,0:11:30.06:0,30,324 0/0:4,0:4:12.03:0,12,136 0/1:1,4:5:20.23:119,0,20 0/0:6,0:6:15.05:0,15,178 0/0:15,0:16:39.09:0,39,420 0/0:10,0:10:24.07:0,24,277 0/0:5,0:5:15.04:0,15,173 0/0:8,0:9:18.05:0,18,215 0/0:15,0:15:42.07:0,42,449 0/0:13,0:13:39.09:0,39,439 0/0:12,0:13:36.09:0,36,408 0/0:5,0:5:15.03:0,15,159 0/0:17,0:17:51.14:0,51,581 0/0:4,0:4:12.03:0,12,137 0/0:10,0:10:30.08:0,30,346 0/0:7,0:7:21.05:0,21,229 0/0:7,0:7:18.05:0,18,220 0/0:8,0:8:24.07:0,24,276 0/0:6,0:6:18.05:0,18,208 0/0:5,0:5:15.05:0,15,178 0/0:2,0:2:6.02:0,6,68 0/0:7,0:8:21.06:0,21,243 0/0:14,1:15:39.05:0,39,401 0/1:4,1:5:21.94:22,0,119 0/0:8,0:8:24.04:0,24,267 0/0:2,0:2:6.01:0,6,62 0/0:14,0:15:39.11:0,39,446 0/0:2,0:2:6:0,6,59 0/0:10,0:10:27.08:0,27,319 0/0:8,0:9:24.06:0,24,271 0/0:3,0:3:9.03:0,9,107 0/0:9,0:9:27.06:0,27,301 16 2051144 . G C 291.96 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.626;DP=622;Dels=0.00;FS=4.512;HRun=1;HaplotypeScore=0.5288;InbreedingCoeff=-0.0315;MQ=58.71;MQ0=0;MQRankSum=0.168;QD=15.37;ReadPosRankSum=0.155 GT:AD:DP:GQ:PL 0/0:13,0:13:36.05:0,36,395 0/0:6,0:6:15.04:0,15,175 0/0:7,0:7:21.06:0,21,235 0/0:45,0:45:99:0,123,1475 0/0:36,0:38:96.29:0,96,1181 0/0:20,0:20:54.13:0,54,634 0/0:23,0:23:60.17:0,60,731 0/0:12,0:12:33.10:0,33,401 0/0:5,0:5:15.04:0,15,165 0/0:7,0:7:21.05:0,21,228 0/0:13,0:13:39.09:0,39,427 0/1:2,7:9:37.93:221,0,38 0/0:7,0:7:21.06:0,21,232 0/1:5,5:10:99:133,0,126 0/0:39,0:39:99:0,105,1158 0/0:19,0:19:48.13:0,48,556 0/0:7,0:7:18.02:0,18,182 0/0:8,0:8:24.07:0,24,271 0/0:23,0:24:63.17:0,63,713 0/0:22,0:22:60.16:0,60,704 0/0:22,0:22:57.12:0,57,632 0/0:15,0:15:42.11:0,42,487 0/0:45,0:45:99:0,120,1434 0/0:27,0:27:72.22:0,72,874 0/0:15,0:15:39.11:0,39,466 0/0:22,0:22:51.16:0,51,642 0/0:12,0:12:33.09:0,33,371 0/0:7,0:7:21.04:0,21,235 0/0:6,0:6:12.03:0,12,135 0/0:7,0:7:21.05:0,21,238 0/0:10,0:10:27.06:0,27,281 0/0:19,0:19:48.11:0,48,546 0/0:12,0:12:27.07:0,27,308 0/0:4,0:4:9.03:0,9,106 0/0:7,0:7:18.05:0,18,205 0/0:5,0:6:15.03:0,15,158 0/0:17,0:17:48.14:0,48,555 0/0:4,0:4:9.03:0,9,110 0/0:4,0:4:12.04:0,12,145 0/0:9,0:9:24.05:0,24,245 0/0:5,0:5:12.03:0,12,137 0/0:13,0:13:36.09:0,36,400 16 2052340 . G A 2752.74 . AC=4;AF=0.048;AN=84;BaseQRankSum=1.945;DP=2966;Dels=0.00;FS=2.810;HRun=0;HaplotypeScore=2.0237;InbreedingCoeff=0.4750;MQ=58.01;MQ0=0;MQRankSum=1.277;QD=19.12;ReadPosRankSum=-1.879 GT:AD:DP:GQ:PL 0/0:65,0:65:99:0,180,2047 0/0:51,1:52:99:0,111,1551 0/0:54,0:54:99:0,141,1606 0/0:123,0:123:99:0,343,4184 0/0:105,0:105:99:0,298,3672 0/0:106,0:106:99:0,286,3517 0/0:62,0:62:99:0,175,2146 0/0:86,0:86:99:0,238,2897 0/0:52,0:52:99:0,141,1617 0/0:51,0:51:99:0,144,1629 0/0:55,0:55:99:0,144,1649 1/1:0,44:44:99:1523,126,0 0/1:20,25:45:99:720,0,514 0/1:32,23:55:99:602,0,879 0/0:130,0:130:99:0,352,3977 0/0:54,0:54:99:0,147,1697 0/0:45,1:46:99:0,110,1511 0/0:37,0:37:99:0,108,1240 0/0:95,0:95:99:0,262,2920 0/0:119,0:119:99:0,337,3863 0/0:108,0:108:99:0,295,3386 0/0:79,0:79:99:0,229,2611 0/0:153,0:153:99:0,427,5277 0/0:66,0:66:99:0,184,2279 0/0:79,0:79:99:0,220,2679 0/0:82,0:82:99:0,229,2806 0/0:43,0:43:99:0,123,1413 0/0:51,0:51:99:0,147,1661 0/0:43,0:43:99:0,120,1356 0/0:60,0:60:99:0,171,1954 0/0:49,0:49:99:0,147,1684 0/0:98,0:98:99:0,280,3134 0/0:80,0:80:99:0,214,2418 0/0:56,0:56:99:0,162,1818 0/0:51,0:51:99:0,135,1551 0/0:45,0:45:99:0,132,1460 0/0:91,0:91:99:0,244,2746 0/0:64,0:64:99:0,184,2106 0/0:61,0:61:99:0,177,2022 0/0:58,0:58:99:0,168,1887 0/0:55,0:55:99:0,150,1681 0/0:58,0:58:99:0,168,1900 16 2087562 . G A 649.92 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.963;DP=913;Dels=0.00;FS=1.627;HRun=0;HaplotypeScore=0.5040;InbreedingCoeff=-0.0462;MQ=59.32;MQ0=0;MQRankSum=0.143;QD=11.61;ReadPosRankSum=-1.533 GT:AD:DP:GQ:PL 0/0:30,0:30:84.16:0,84,920 0/0:20,0:20:54.13:0,54,614 0/0:11,0:11:30.08:0,30,351 0/0:25,0:25:60.19:0,60,766 0/0:22,0:22:57.17:0,57,700 0/0:17,0:17:45.13:0,45,546 0/0:17,0:17:39.10:0,39,488 0/0:12,0:12:24.08:0,24,333 0/0:19,0:19:54.12:0,54,614 0/0:15,0:15:42.10:0,42,457 0/0:15,0:15:42.11:0,42,471 0/0:24,0:24:69.16:0,69,771 0/0:15,0:15:39.09:0,39,437 0/0:19,0:19:57.14:0,57,616 0/0:51,0:51:99:0,141,1558 0/0:19,0:19:45.11:0,45,495 0/0:15,0:15:42.11:0,42,462 0/0:26,0:26:75.19:0,75,835 0/0:37,0:37:93.24:0,93,1079 0/0:33,0:33:84.23:0,84,1002 0/0:32,0:32:93.25:0,93,1066 0/0:26,0:26:69.17:0,69,791 0/0:21,0:21:57.15:0,57,674 0/0:18,0:18:42.13:0,42,526 0/0:23,0:24:54.16:0,54,681 0/0:15,0:15:39.11:0,39,474 0/0:10,1:11:1.55:4,0,182 0/0:29,0:29:84.23:0,84,956 0/0:19,0:19:51.13:0,51,607 0/1:10,12:22:99:361,0,241 0/0:9,0:9:27.07:0,27,303 0/0:33,0:33:87.21:0,87,1002 0/1:8,6:14:99:170,0,209 0/0:23,0:23:60.16:0,60,688 0/0:23,0:23:60.16:0,60,698 0/0:14,0:14:39.08:0,39,425 0/0:33,0:34:78.23:0,78,944 0/0:20,0:20:57.15:0,57,640 0/0:20,0:20:57.13:0,57,629 0/0:27,0:27:72.19:0,72,812 0/1:12,8:20:99:194,0,319 0/0:17,0:17:48.12:0,48,541 16 2090177 . A T 2394.98 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.075;DP=5206;DS;Dels=0.00;FS=1.746;HRun=0;HaplotypeScore=4.2363;InbreedingCoeff=-0.0244;MQ=58.99;MQ0=0;MQRankSum=0.717;QD=12.04;ReadPosRankSum=-0.218 GT:AD:DP:GQ:PL 0/0:97,0:99:99:0,253,2998 0/0:88,0:89:99:0,232,2801 0/0:74,0:75:99:0,190,2261 0/0:242,0:244:99:0,644,7524 0/0:231,0:233:99:0,620,7306 0/0:228,0:230:99:0,578,7074 0/0:177,1:178:99:0,442,5453 0/0:215,0:222:99:0,575,6896 0/0:83,0:83:99:0,226,2619 0/0:67,0:67:99:0,168,2004 0/0:68,0:68:99:0,184,2154 0/0:78,1:79:99:0,211,2536 0/0:55,0:55:99:0,141,1695 0/0:84,0:84:99:0,223,2636 0/0:242,1:246:99:0,593,7252 0/0:100,0:101:99:0,262,3145 0/0:82,0:84:99:0,211,2488 0/0:74,1:75:99:0,189,2371 0/0:148,0:155:99:0,358,4298 0/0:223,0:224:99:0,535,6440 0/0:158,0:163:99:0,391,4673 0/0:104,0:104:99:0,277,3246 0/0:246,3:250:99:0,665,7890 0/0:161,0:162:99:0,400,4761 0/0:202,0:203:99:0,508,6152 0/0:169,0:170:99:0,418,5007 0/0:55,0:55:99:0,147,1765 0/0:82,0:83:99:0,220,2589 0/0:72,0:72:99:0,199,2321 0/1:48,42:90:99:1148,0,1254 0/0:70,1:73:99:0,193,2271 0/0:200,0:203:99:0,484,5843 0/1:57,51:109:99:1309,0,1375 0/0:67,0:67:99:0,190,2192 0/0:62,0:64:99:0,178,2095 0/0:98,0:98:99:0,259,3092 0/0:148,0:151:99:0,370,4388 0/0:80,1:82:99:0,217,2541 0/0:82,0:84:99:0,226,2633 0/0:77,0:77:99:0,205,2402 0/0:58,0:58:99:0,150,1758 0/0:96,0:96:99:0,253,2992 16 2114372 . C T 953.69 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.519;DP=3025;DS;Dels=0.00;FS=0.673;HRun=1;HaplotypeScore=3.2191;InbreedingCoeff=-0.0120;MQ=59.27;MQ0=0;MQRankSum=0.723;QD=12.55;ReadPosRankSum=0.532 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,111,1345 0/0:38,0:38:99:0,114,1366 0/0:48,0:48:99:0,135,1617 0/0:169,2:172:99:0,457,5797 0/0:157,1:158:99:0,436,5438 0/0:110,0:111:99:0,301,3789 0/1:40,36:76:99:1000,0,1154 0/0:136,0:136:99:0,382,4788 0/0:63,0:63:99:0,174,2113 0/0:44,0:44:99:0,114,1418 0/0:34,0:34:93.28:0,93,1131 0/0:52,0:52:99:0,150,1818 0/0:40,0:40:99:0,108,1289 0/0:48,0:48:99:0,138,1650 0/0:132,1:134:99:0,370,4475 0/0:52,0:52:99:0,144,1764 0/0:45,0:45:99:0,129,1539 0/0:46,0:46:99:0,129,1526 0/0:90,2:93:99:0,244,2923 0/0:115,2:117:99:0,316,3849 0/0:84,1:85:99:0,217,2604 0/0:83,0:83:99:0,232,2747 0/0:158,0:158:99:0,442,5549 0/0:73,0:73:99:0,196,2450 0/0:100,0:100:99:0,277,3454 0/0:90,1:91:99:0,241,2997 0/0:36,0:36:99:0,99,1177 0/0:44,0:44:99:0,126,1501 0/0:47,0:47:99:0,141,1673 0/0:47,0:48:99:0,129,1557 0/0:48,1:49:99:0,129,1524 0/0:105,0:105:99:0,292,3537 0/0:83,0:83:99:0,241,2870 0/0:48,0:48:99:0,141,1741 0/0:47,0:47:99:0,141,1682 0/0:56,0:56:99:0,159,1897 0/0:87,0:88:99:0,220,2624 0/0:48,0:48:99:0,141,1706 0/0:52,0:52:99:0,135,1593 0/0:49,1:50:99:0,141,1674 0/0:49,0:49:99:0,132,1582 0/0:40,0:40:99:0,114,1390 16 2114407 . C T 3608.95 . AC=4;AF=0.048;AN=84;BaseQRankSum=-9.272;DP=3190;DS;Dels=0.00;FS=2.229;HRun=0;HaplotypeScore=3.0865;InbreedingCoeff=-0.0500;MQ=59.07;MQ0=0;MQRankSum=1.012;QD=12.62;ReadPosRankSum=0.467 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,129,1636 0/1:16,16:32:99:470,0,389 0/1:27,24:51:99:662,0,728 0/0:175,0:175:99:0,460,6049 0/0:145,1:146:99:0,409,5361 0/1:51,40:91:99:1084,0,1533 0/0:76,0:76:99:0,208,2741 0/1:61,51:112:99:1392,0,1911 0/0:62,0:62:99:0,168,2078 0/0:50,0:50:99:0,150,1843 0/0:37,0:37:90.27:0,90,1130 0/0:52,0:52:99:0,147,1831 0/0:43,1:44:89.70:0,90,1439 0/0:57,0:57:99:0,156,1930 0/0:154,0:154:99:0,415,5118 0/0:55,0:55:99:0,156,1937 0/0:59,0:59:99:0,168,2089 0/0:50,0:50:99:0,138,1668 0/0:106,0:106:99:0,286,3493 0/0:110,1:111:99:0,298,3713 0/0:110,0:111:99:0,310,3758 0/0:80,0:81:99:0,223,2851 0/0:168,0:168:99:0,475,6286 0/0:75,0:75:99:0,199,2597 0/0:98,0:98:99:0,265,3498 0/0:89,0:89:99:0,247,3238 0/0:42,0:42:99:0,117,1476 0/0:41,0:41:99:0,111,1380 0/0:55,0:55:99:0,147,1876 0/0:62,0:62:99:0,165,2064 0/0:49,0:49:99:0,135,1659 0/0:98,0:98:99:0,268,3423 0/0:92,0:92:99:0,238,3040 0/0:58,0:58:99:0,156,1946 0/0:63,0:63:99:0,184,2244 0/0:48,0:48:99:0,132,1665 0/0:105,0:106:99:0,289,3582 0/0:51,0:52:99:0,138,1680 0/0:57,0:57:99:0,156,1872 0/0:57,0:57:99:0,153,1883 0/0:48,0:48:99:0,138,1706 0/0:73,0:73:99:0,196,2502 16 2121865 . G C 24.27 . AC=6;AF=0.077;AN=78;BaseQRankSum=-1.518;DP=168;Dels=0.00;FS=43.887;HRun=4;HaplotypeScore=0.0319;InbreedingCoeff=-0.1465;MQ=57.79;MQ0=0;MQRankSum=0.597;QD=0.84;ReadPosRankSum=-4.058 GT:AD:DP:GQ:PL ./. 0/0:2,1:3:6.02:0,6,76 ./. 0/1:7,2:9:10.49:10,0,202 0/0:7,4:11:19.30:0,19,224 0/0:4,1:5:12.04:0,12,162 0/1:4,1:5:18.39:18,0,137 0/0:8,1:9:24.08:0,24,316 0/0:1,0:1:3.01:0,3,40 ./. 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6.02:0,6,72 0/0:1,0:1:3.01:0,3,36 0/0:4,0:4:12.04:0,12,147 0/0:12,0:12:33.07:0,33,395 0/0:5,0:5:12.04:0,12,143 0/0:4,0:4:12.03:0,12,146 0/0:2,0:2:6.02:0,6,77 0/0:4,0:4:12.04:0,12,148 0/1:5,1:6:15.38:15,0,174 0/0:5,0:5:15.04:0,15,171 0/0:4,0:4:12.04:0,12,152 0/0:7,1:8:21.07:0,21,271 0/0:6,1:7:12.04:0,12,164 0/0:2,1:3:6.01:0,6,67 0/0:2,1:3:6.01:0,6,68 0/1:2,1:3:30.98:31,0,51 0/0:3,0:3:9.03:0,9,104 0/0:4,0:4:12.04:0,12,153 0/0:4,0:4:9.02:0,9,102 0/1:1,1:2:25.53:33,0,26 0/0:2,0:2:6.02:0,6,79 0/0:1,0:1:3.01:0,3,36 0/0:3,0:3:9.03:0,9,105 0/0:8,0:8:24.07:0,24,289 0/0:3,0:3:9:0,9,92 0/0:4,0:5:9.02:0,9,104 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.01:0,9,89 0/1:3,1:4:9.66:10,0,87 0/0:4,0:4:12.04:0,12,149 0/0:3,0:3:9.03:0,9,112 16 2130251 . A C 2269.99 . AC=31;AF=0.369;AN=84;BaseQRankSum=-28.570;DP=3200;DS;Dels=0.00;FS=1134.936;HRun=2;HaplotypeScore=2.8821;InbreedingCoeff=-0.5833;MQ=57.85;MQ0=0;MQRankSum=-2.250;QD=0.96;ReadPosRankSum=-15.483 GT:AD:DP:GQ:PL 0/1:18,17:35:74.62:75,0,538 0/1:24,26:51:45.76:46,0,698 0/0:30,16:46:1.52:0,2,810 0/1:112,103:215:99:117,0,3380 0/1:94,95:189:99:149,0,2776 0/1:49,55:105:99:100,0,1497 0/0:46,43:90:9.88:0,10,1298 0/1:69,71:141:2.02:2,0,1969 0/0:26,29:55:16.40:0,16,819 0/1:20,20:40:27.55:28,0,560 0/0:23,19:43:11.19:0,11,750 0/1:23,20:43:57.09:57,0,677 0/1:19,17:36:99:140,0,558 0/1:25,23:48:63.87:64,0,669 0/0:109,44:155:22.80:0,23,3080 0/1:24,19:43:99:109,0,644 0/1:33,22:55:77.40:77,0,977 0/0:26,21:47:35.87:0,36,878 0/1:50,32:82:19.22:19,0,1434 0/0:71,64:135:97.46:0,97,2152 0/1:51,41:94:99:170,0,1460 0/1:50,33:84:79.34:79,0,1481 0/1:90,109:199:99:231,0,2657 0/0:47,37:84:68.43:0,68,1558 0/1:82,62:145:99:112,0,2265 0/1:56,37:93:50.19:50,0,1628 0/1:18,17:37:81.53:82,0,574 0/1:34,17:52:32.49:32,0,978 0/1:27,23:50:99:107,0,709 0/1:28,21:49:28.05:28,0,803 0/1:30,20:51:12.48:12,0,849 0/0:64,35:100:99:0,128,1993 0/1:24,24:48:80.82:81,0,622 0/0:21,14:35:57.14:0,57,650 0/1:24,21:45:39.96:40,0,711 0/0:36,21:57:25.73:0,26,1188 0/1:47,27:75:35.13:35,0,1370 0/1:30,24:54:47.13:47,0,829 0/1:35,20:55:5.89:6,0,995 0/1:30,19:50:45.50:45,0,923 0/1:23,23:46:99:117,0,536 0/1:21,21:43:99:186,0,612 16 2138584 . G C 729.02 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.876;DP=1064;Dels=0.00;FS=1.293;HRun=1;HaplotypeScore=0.6517;InbreedingCoeff=-0.0245;MQ=59.10;MQ0=0;MQRankSum=2.277;QD=12.15;ReadPosRankSum=-0.209 GT:AD:DP:GQ:PL 0/0:8,0:8:21.06:0,21,253 0/0:16,0:16:45.12:0,45,536 0/0:11,0:11:33.10:0,33,409 0/0:47,0:47:99:0,138,1758 0/0:44,0:44:99:0,123,1593 0/0:37,0:37:99:0,102,1362 0/0:24,0:24:72.22:0,72,945 0/0:33,0:33:93.29:0,93,1235 0/0:19,0:19:57.15:0,57,660 0/1:10,8:18:99:206,0,286 0/0:22,0:22:60.19:0,60,757 0/0:18,0:18:51.16:0,51,626 0/0:12,0:12:36.11:0,36,438 0/0:19,0:19:57.18:0,57,711 0/0:59,0:59:99:0,163,2048 0/0:14,0:14:42.13:0,42,510 0/0:15,0:15:45.14:0,45,557 0/0:15,0:15:45.14:0,45,575 0/0:46,0:48:99:0,126,1530 0/1:19,23:42:99:585,0,554 0/0:44,0:45:99:0,129,1586 0/0:23,0:23:63.19:0,63,773 0/0:61,0:61:99:0,166,2212 0/0:21,0:21:60.20:0,60,798 0/0:25,0:25:72.23:0,72,957 0/0:24,0:24:66.21:0,66,869 0/0:10,0:10:30.09:0,30,374 0/0:11,0:11:33.10:0,33,414 0/0:17,0:17:51.16:0,51,650 0/0:22,0:22:60.18:0,60,735 0/0:15,0:15:45.14:0,45,555 0/0:39,0:39:99:0,111,1349 0/0:25,0:25:75.23:0,75,927 0/0:14,0:14:42.13:0,42,529 0/0:24,0:24:60.17:0,60,730 0/0:16,0:16:45.13:0,45,555 0/0:49,0:50:99:0,144,1724 0/0:16,0:16:48.14:0,48,577 0/0:26,0:26:75.22:0,75,918 0/0:21,0:21:60.16:0,60,723 0/0:17,0:17:51.16:0,51,635 0/0:21,0:21:60.15:0,60,718 16 2140912 . G C 65.51 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.557;DP=336;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2260;InbreedingCoeff=-0.0259;MQ=58.60;MQ0=0;MQRankSum=-0.253;QD=8.19;ReadPosRankSum=-0.482 GT:AD:DP:GQ:PL 0/0:4,0:4:12.03:0,12,137 0/0:9,0:9:24.07:0,24,294 0/0:4,0:4:12.04:0,12,153 0/0:12,0:12:36.11:0,36,459 0/0:19,0:19:51.16:0,51,645 0/0:11,0:11:33.11:0,33,429 0/0:7,0:7:18.06:0,18,227 0/0:9,0:9:27.08:0,27,344 0/0:9,0:9:27.09:0,27,339 0/0:12,0:12:30.09:0,30,380 0/0:10,0:10:27.07:0,27,325 0/0:4,0:4:12.04:0,12,142 0/0:5,0:5:15.05:0,15,179 0/0:5,0:5:15.04:0,15,176 0/0:17,0:17:48.15:0,48,603 0/1:3,5:8:86.79:112,0,87 0/0:7,0:7:18.05:0,18,225 0/0:4,0:4:12.03:0,12,130 0/0:10,0:10:27.08:0,27,334 0/0:11,0:11:27.09:0,27,353 0/0:9,0:9:27.07:0,27,319 0/0:9,0:9:27.09:0,27,337 0/0:17,0:17:51.16:0,51,667 0/0:7,0:7:21.07:0,21,271 0/0:12,0:12:30.09:0,30,382 0/0:8,0:8:24.06:0,24,299 0/0:4,0:4:12.04:0,12,147 0/0:4,0:4:9.03:0,9,109 0/0:4,0:4:9.03:0,9,123 0/0:6,0:6:18.06:0,18,225 0/0:4,0:4:12.04:0,12,151 0/0:6,0:6:12.04:0,12,150 0/0:7,0:7:21.07:0,21,265 0/0:7,0:7:21.07:0,21,262 0/0:6,0:6:15.05:0,15,188 0/0:3,0:3:9.03:0,9,112 0/0:13,0:13:33.10:0,33,405 0/0:6,0:6:18.06:0,18,221 0/0:11,0:11:33.10:0,33,398 0/0:4,0:4:12.04:0,12,151 0/0:8,0:8:24.07:0,24,286 0/0:4,0:4:9.03:0,9,121 16 2140927 . G A 94.73 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.371;DP=308;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2080;InbreedingCoeff=0.5168;MQ=58.49;MQ0=0;MQRankSum=-1.347;QD=18.95;ReadPosRankSum=-1.428 GT:AD:DP:GQ:PL 0/0:4,0:4:12.03:0,12,134 0/0:7,0:7:21.07:0,21,260 0/0:3,0:3:9.02:0,9,106 0/0:9,0:9:27.09:0,27,342 0/0:14,0:14:39.10:0,39,485 0/0:7,0:7:21.06:0,21,269 0/1:0,5:5:0.26:152,12,0 0/0:8,0:8:21.07:0,21,281 0/0:7,0:7:18.06:0,18,230 0/0:10,0:10:27.08:0,27,345 0/0:7,0:7:18.05:0,18,217 0/0:4,0:5:9.03:0,9,115 0/0:3,0:3:9.03:0,9,106 0/0:5,0:5:15.03:0,15,168 0/0:23,0:23:60.14:0,60,720 0/0:11,0:11:30.09:0,30,371 0/0:6,0:6:12.02:0,12,136 0/0:3,0:3:9.03:0,9,107 0/0:5,0:5:15.05:0,15,187 0/0:9,0:9:24.08:0,24,316 0/0:12,0:12:30.09:0,30,377 0/0:8,0:8:24.06:0,24,282 0/0:17,0:17:45.14:0,45,589 0/0:5,0:5:12.04:0,12,165 0/0:12,0:12:33.11:0,33,436 0/0:4,0:4:12.04:0,12,155 0/0:4,0:4:12.01:0,12,137 0/0:7,0:7:21.06:0,21,251 0/0:6,0:6:15.05:0,15,191 0/0:4,0:4:12.04:0,12,146 0/0:5,0:5:12.04:0,12,157 0/0:7,0:7:21.07:0,21,266 0/0:8,0:8:24.08:0,24,300 0/0:8,0:8:24.08:0,24,302 0/0:5,0:5:9.03:0,9,129 0/0:2,0:2:6.01:0,6,62 0/0:16,0:16:42.13:0,42,510 0/0:7,0:7:21.06:0,21,257 0/0:8,0:8:24.07:0,24,294 0/0:4,0:4:12.04:0,12,152 0/0:5,0:5:15.04:0,15,181 0/0:3,0:3:9.03:0,9,118 16 2140972 . G A 158.56 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.863;DP=186;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1293;InbreedingCoeff=-0.1085;MQ=57.98;MQ0=0;MQRankSum=0.727;QD=7.55;ReadPosRankSum=-1.272 GT:AD:DP:GQ:PL 0/0:4,0:4:9.03:0,9,113 0/0:1,0:1:3.01:0,3,36 0/0:1,0:1:3.01:0,3,39 0/0:4,0:4:12.03:0,12,144 0/0:9,0:9:27.08:0,27,338 0/0:2,0:2:5.99:0,6,58 0/0:2,0:2:6.02:0,6,80 0/0:4,0:4:9.03:0,9,114 0/0:5,0:5:9.03:0,9,117 0/0:2,0:2:6.02:0,6,71 0/1:1,3:4:18.56:95,0,19 0/0:3,0:3:6.01:0,6,72 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.03:0,9,114 0/0:18,0:18:45.12:0,45,537 0/0:9,0:9:24.07:0,24,286 0/0:2,0:2:6.02:0,6,75 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,33 0/0:7,0:7:21.06:0,21,254 0/0:8,0:8:24.07:0,24,288 0/0:9,0:9:24.08:0,24,304 0/0:5,0:5:15.05:0,15,200 0/0:5,0:5:15.04:0,15,188 0/0:6,0:6:15.04:0,15,191 0/0:3,0:3:9.03:0,9,117 0/0:4,0:4:9.02:0,9,107 0/0:5,0:5:15.04:0,15,174 0/0:2,0:2:6.02:0,6,68 0/0:1,0:1:3.01:0,3,36 0/0:1,0:1:3.01:0,3,39 0/0:4,0:4:12.03:0,12,140 0/0:6,0:6:15.04:0,15,180 0/0:1,0:1:3.01:0,3,38 0/0:2,0:2:6.02:0,6,74 0/0:7,0:7:18.05:0,18,222 0/1:8,4:12:85.09:85,0,222 0/0:7,0:8:21.06:0,21,253 0/1:3,2:5:51.81:52,0,89 0/0:4,0:4:9.02:0,9,108 0/0:3,0:3:9.02:0,9,89 0/0:2,0:2:6.01:0,6,60 16 2156447 . G A 671.70 . AC=12;AF=0.154;AN=78;BaseQRankSum=-5.412;DP=385;Dels=0.00;FS=6.561;HRun=1;HaplotypeScore=0.3260;InbreedingCoeff=0.0335;MQ=21.99;MQ0=73;MQRankSum=0.277;QD=6.16;ReadPosRankSum=1.385 GT:AD:DP:GQ:PL 0/0:5,0:5:8.97:0,9,77 ./. 1/1:0,4:4:5.98:46,6,0 0/0:15,0:15:27.05:0,27,315 0/0:17,0:17:36:0,36,370 0/1:9,6:15:77.45:77,0,180 0/0:5,0:5:3.01:0,3,33 0/1:6,1:7:7.66:8,0,119 0/0:9,0:9:12.02:0,12,132 0/0:3,0:3:8.99:0,9,81 0/0:5,0:5:3.01:0,3,42 0/1:5,5:10:21.45:68,0,21 0/0:6,2:8:8.99:0,9,86 0/0:11,0:11:18.05:0,18,214 0/0:18,0:18:24.03:0,24,264 0/0:18,0:18:30:0,30,293 0/0:5,0:5:5.99:0,6,61 0/0:7,0:7:6:0,6,59 0/0:6,0:6:6.02:0,6,67 0/1:8,11:19:64.56:231,0,65 0/0:7,0:7:11.98:0,12,114 1/1:3,6:9:8.97:77,9,0 0/0:24,0:24:45.08:0,45,509 0/0:11,0:11:24.07:0,24,287 0/0:16,0:16:24.02:0,24,256 0/0:14,0:14:9:0,9,94 0/0:6,0:6:6.01:0,6,57 0/0:4,0:4:5.99:0,6,55 ./. 0/0:10,0:10:20.98:0,21,193 0/0:10,0:10:15.01:0,15,155 0/1:8,5:13:58.79:110,0,59 0/1:5,5:10:89.80:107,0,90 0/0:7,0:7:9:0,9,100 0/0:9,0:9:6.01:0,6,61 0/0:6,0:6:8.99:0,9,85 0/1:10,4:14:64.46:64,0,140 0/1:6,2:8:17.64:18,0,66 0/0:4,0:4:3.01:0,3,33 0/0:1,0:1:2.98:0,3,22 ./. 0/0:7,0:7:2.99:0,3,23 16 2156850 . A G 185.78 . AC=8;AF=0.100;AN=80;BaseQRankSum=0.041;DP=716;Dels=0.00;FS=6.572;HRun=1;HaplotypeScore=0.9394;InbreedingCoeff=-0.0371;MQ=26.13;MQ0=8;MQRankSum=2.679;QD=2.29;ReadPosRankSum=1.106 GT:AD:DP:GQ:PL 0/0:11,0:11:3.01:0,3,38 0/0:6,0:6:3.01:0,3,37 1/1:0,2:2:3.01:33,3,0 0/0:42,0:42:45.12:0,45,514 0/0:41,0:41:42.12:0,42,514 0/1:16,4:20:24.41:24,0,64 0/0:21,0:21:9.02:0,9,103 0/1:14,3:17:82.25:82,0,87 0/0:14,0:14:12.04:0,12,144 0/0:11,0:11:6.01:0,6,67 ./. 0/1:8,1:9:24.41:24,0,65 0/0:5,0:5:3.01:0,3,32 0/0:11,0:11:6.02:0,6,72 0/0:65,0:65:63.19:0,63,768 0/0:25,0:26:24.08:0,24,306 0/0:17,0:17:9.01:0,9,99 0/0:12,0:12:12.03:0,12,131 0/0:26,0:26:24.08:0,24,305 0/1:10,2:13:54.83:55,0,61 0/0:16,0:16:18.04:0,18,203 0/1:7,3:10:24.42:49,0,24 0/0:35,0:35:36.11:0,36,451 0/0:19,0:19:18.05:0,18,212 0/0:26,0:26:21.06:0,21,247 0/0:16,0:16:6.02:0,6,72 0/0:14,0:15:6.02:0,6,70 0/0:16,0:16:15.05:0,15,191 0/0:10,0:10:12.03:0,12,136 0/0:11,0:11:9.03:0,9,109 0/0:13,0:13:18.05:0,18,215 0/0:15,0:15:6.02:0,6,73 0/1:9,1:10:27.42:27,0,32 0/0:17,0:17:6.02:0,6,70 0/0:24,0:24:12.04:0,12,153 0/0:15,0:15:12.04:0,12,151 ./. 0/0:5,0:5:3.01:0,3,34 0/0:14,0:14:6.01:0,6,66 0/0:16,0:16:12.04:0,12,149 0/0:15,0:15:3.01:0,3,34 0/0:8,0:8:6.02:0,6,68 16 2162361 . A G 193.40 . AC=9;AF=0.107;AN=84;BaseQRankSum=-0.677;DP=582;Dels=0.00;FS=5.016;HRun=0;HaplotypeScore=0.4855;InbreedingCoeff=0.0006;MQ=39.60;MQ0=8;MQRankSum=-2.643;QD=2.54;ReadPosRankSum=0.026 GT:AD:DP:GQ:PL 0/0:12,0:12:30.03:0,30,317 0/1:3,2:5:24.42:24,0,52 0/1:0,2:2:1.76:33,3,0 0/0:35,0:35:93.09:0,93,962 0/0:25,0:25:69.16:0,69,803 0/1:3,4:7:82.25:82,0,87 0/0:9,0:9:24.03:0,24,268 0/1:7,2:9:12.40:12,0,176 0/0:16,0:16:39.06:0,39,425 0/0:18,0:18:39.11:0,39,484 0/0:13,1:14:36.04:0,36,370 0/1:4,3:7:18.41:18,0,104 0/0:1,1:2:3.01:0,3,35 0/0:9,0:9:24.03:0,24,253 0/0:54,0:54:99:0,138,1481 0/0:16,0:16:45.06:0,45,460 0/0:10,0:10:24.02:0,24,246 0/0:12,0:12:36.08:0,36,397 0/0:28,0:28:72.06:0,72,732 0/0:25,0:25:69.08:0,69,724 0/0:30,0:30:78.07:0,78,813 0/1:10,2:12:7.50:8,0,210 0/0:23,0:23:63.12:0,63,706 0/0:10,0:10:24.06:0,24,290 0/0:13,0:13:36.09:0,36,421 0/0:10,0:10:30.06:0,30,332 0/0:7,0:7:21.03:0,21,215 0/0:8,0:8:18.02:0,18,193 0/0:13,0:13:36.04:0,36,376 0/0:13,0:13:33.05:0,33,367 0/0:5,0:5:15:0,15,149 0/1:7,3:10:36.01:36,0,193 0/1:10,4:14:67.24:67,0,224 0/0:9,0:9:27.04:0,27,279 0/0:13,0:13:30.04:0,30,334 0/0:13,0:13:39.05:0,39,410 0/0:11,1:12:1.96:2,0,294 0/1:8,2:10:35.99:36,0,212 0/0:11,0:11:21.04:0,21,236 0/0:16,0:16:42.08:0,42,459 0/0:5,0:5:12.02:0,12,125 0/0:10,0:10:24.04:0,24,275 16 2169161 . T A 107.02 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.016;DP=1376;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.3611;InbreedingCoeff=-0.0134;MQ=28.31;MQ0=273;MQRankSum=2.234;QD=4.12;ReadPosRankSum=-0.484 GT:AD:DP:GQ:PL 0/0:27,0:27:45.13:0,45,516 0/0:34,0:34:45.13:0,45,534 0/0:29,0:29:39.12:0,39,462 0/0:35,0:35:54.15:0,54,637 0/0:31,0:31:33.10:0,33,416 0/0:43,0:43:51.16:0,51,643 0/0:27,0:27:45.13:0,45,549 0/0:31,0:32:42.11:0,42,474 0/0:29,0:29:36.10:0,36,403 0/0:22,0:22:21.05:0,21,230 0/0:30,0:30:30.09:0,30,346 0/0:36,0:36:45.14:0,45,551 0/0:22,0:22:15.04:0,15,175 0/0:31,0:31:33.09:0,33,386 0/0:119,0:119:99:0,159,1964 0/0:31,0:31:24.07:0,24,281 0/0:21,0:21:27.08:0,27,309 0/0:24,0:25:18.06:0,18,216 0/0:33,0:33:39.11:0,39,470 0/0:37,0:37:60.16:0,60,720 0/0:31,0:31:39.12:0,39,476 0/0:10,0:10:15.05:0,15,177 0/0:34,0:34:57.17:0,57,680 0/0:29,0:29:51.16:0,51,636 0/1:20,6:26:99:153,0,191 0/0:34,0:34:48.14:0,48,583 0/0:28,0:28:33.09:0,33,377 0/0:41,0:41:42.13:0,42,519 0/0:25,0:25:24.07:0,24,277 0/0:29,0:29:21.06:0,21,237 0/0:25,0:25:33.10:0,33,394 0/0:39,0:39:48.14:0,48,571 0/0:27,0:27:33.10:0,33,388 0/0:34,0:34:54.16:0,54,651 0/0:31,0:31:48.14:0,48,554 0/0:31,0:31:42.12:0,42,497 0/0:38,0:38:42.13:0,42,517 0/0:29,0:29:45.13:0,45,527 0/0:32,0:32:45.13:0,45,532 0/0:29,0:29:27.08:0,27,317 0/0:31,0:31:42.13:0,42,511 0/0:49,0:49:54.15:0,54,639 16 2201579 . C T 1245.77 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.347;DP=2679;Dels=0.00;FS=14.691;HRun=2;HaplotypeScore=1.0510;InbreedingCoeff=-0.0244;MQ=59.02;MQ0=0;MQRankSum=1.357;QD=13.84;ReadPosRankSum=-0.584 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,123,1555 0/0:45,0:45:99:0,126,1601 0/0:48,0:48:99:0,132,1690 0/0:111,0:111:99:0,313,4187 0/0:122,0:122:99:0,343,4628 0/0:76,0:76:99:0,208,2753 0/0:60,0:60:99:0,163,2204 0/0:81,0:81:99:0,223,3002 0/0:46,0:46:99:0,126,1590 0/0:44,0:44:99:0,132,1660 0/0:47,0:47:99:0,120,1551 0/1:32,25:57:99:696,0,968 0/0:49,0:49:99:0,132,1683 0/1:13,20:33:99:612,0,383 0/0:166,0:166:99:0,439,5650 0/0:36,0:36:99:0,102,1287 0/0:44,0:44:99:0,120,1541 0/0:33,0:33:96.30:0,96,1193 0/0:85,0:85:99:0,244,3056 0/0:96,0:96:99:0,268,3425 0/0:96,0:96:99:0,250,3192 0/0:49,0:49:99:0,138,1762 0/0:142,0:142:99:0,406,5438 0/0:58,0:59:99:0,157,2146 0/0:93,0:93:99:0,247,3383 0/0:55,0:55:99:0,144,1976 0/0:37,0:37:99:0,102,1299 0/0:46,0:46:99:0,132,1668 0/0:38,0:38:99:0,111,1372 0/0:53,0:54:99:0,153,1936 0/0:51,0:51:99:0,138,1791 0/0:74,0:74:99:0,202,2612 0/0:64,0:64:99:0,178,2279 0/0:50,0:50:99:0,138,1759 0/0:40,0:40:99:0,114,1431 0/0:49,0:49:99:0,132,1673 0/0:91,0:91:99:0,262,3269 0/0:44,0:44:99:0,126,1584 0/0:68,0:68:99:0,196,2467 0/0:50,0:50:99:0,147,1830 0/0:40,0:40:99:0,114,1427 0/0:66,0:66:99:0,184,2338 16 2222286 . C T 2342.75 . AC=7;AF=0.083;AN=84;BaseQRankSum=2.223;DP=1131;Dels=0.00;FS=3.098;HRun=0;HaplotypeScore=1.7432;InbreedingCoeff=-0.0912;MQ=58.74;MQ0=0;MQRankSum=0.250;QD=11.05;ReadPosRankSum=1.576 GT:AD:DP:GQ:PL 0/0:19,0:19:42.10:0,42,453 0/1:14,12:27:99:303,0,367 0/1:9,7:16:99:137,0,213 0/0:62,0:62:99:0,168,1976 0/0:52,0:52:99:0,147,1705 0/1:24,22:47:99:507,0,707 0/0:37,0:38:99:0,105,1237 0/1:18,13:32:99:282,0,531 0/0:25,0:25:66.14:0,66,693 0/0:15,0:15:42.11:0,42,464 0/0:9,0:9:18.05:0,18,194 0/0:14,0:15:39.10:0,39,423 0/0:23,0:23:69.17:0,69,757 0/0:25,0:25:66.14:0,66,702 0/0:59,1:61:99:0,132,1699 0/0:20,0:20:57.12:0,57,615 0/0:23,0:23:60.14:0,60,661 0/0:18,0:18:51.13:0,51,551 0/0:20,0:20:57.15:0,57,632 0/0:23,0:23:57.13:0,57,627 0/0:36,0:37:96.24:0,96,1056 0/1:8,19:28:99:499,0,180 0/0:72,0:72:99:0,186,2218 0/0:30,0:30:78.22:0,78,933 0/0:29,0:29:69.17:0,69,791 0/0:26,0:26:75.21:0,75,885 0/0:15,0:15:42.12:0,42,491 0/0:31,0:31:87.21:0,87,962 0/0:16,0:16:45.12:0,45,500 0/0:19,0:19:54.11:0,54,566 0/0:13,0:13:30.07:0,30,335 0/0:38,0:38:99:0,102,1149 0/0:18,0:18:48.11:0,48,529 0/0:16,0:16:42.11:0,42,478 0/0:16,0:16:45.11:0,45,483 0/0:19,0:19:48.11:0,48,517 0/1:16,21:37:99:471,0,394 0/1:14,10:25:99:258,0,337 0/0:22,0:22:60.09:0,60,624 0/0:21,0:21:57.09:0,57,592 0/0:11,0:11:30.07:0,30,333 0/0:22,0:22:57.13:0,57,640 16 2222307 . C T 292.94 . AC=3;AF=0.036;AN=84;BaseQRankSum=2.351;DP=942;Dels=0.00;FS=8.151;HRun=0;HaplotypeScore=0.7248;InbreedingCoeff=-0.0372;MQ=58.74;MQ0=0;MQRankSum=0.709;QD=6.51;ReadPosRankSum=-1.786 GT:AD:DP:GQ:PL 0/0:16,0:16:45.07:0,45,471 0/0:22,0:22:66.17:0,66,720 0/0:22,0:22:57.13:0,57,622 0/0:62,0:63:99:0,171,1984 0/0:35,0:35:93.25:0,93,1095 0/0:38,0:38:99:0,108,1271 0/0:29,0:29:75.21:0,75,886 0/0:29,0:29:81.18:0,81,916 0/0:21,0:21:63.16:0,63,687 0/0:16,0:16:39.10:0,39,431 0/0:8,0:8:24.06:0,24,258 0/0:14,0:14:39.06:0,39,396 0/0:17,0:17:45.10:0,45,476 0/1:15,6:22:99:142,0,327 0/0:49,0:50:99:0,132,1424 0/0:20,0:20:57.14:0,57,611 0/0:22,0:23:60.13:0,60,630 0/1:5,2:7:53.28:53,0,119 0/1:10,6:16:99:173,0,198 0/0:21,0:21:57.15:0,57,622 0/0:33,0:33:90.18:0,90,955 0/0:24,0:24:69.16:0,69,726 0/0:50,0:50:99:0,135,1644 0/0:24,0:25:66.18:0,66,767 0/0:27,0:27:69.21:0,69,838 0/0:24,0:24:51.14:0,51,618 0/0:13,0:13:33.08:0,33,368 0/0:23,0:24:69.17:0,69,746 0/0:14,0:14:39.10:0,39,426 0/0:19,0:19:57.14:0,57,629 0/0:16,0:16:45.12:0,45,513 0/0:31,0:31:81.22:0,81,912 0/0:14,0:14:36.09:0,36,392 0/0:16,0:16:48.08:0,48,498 0/0:10,0:10:30.07:0,30,318 0/0:16,0:16:45.09:0,45,472 0/0:27,0:28:75.17:0,75,802 0/0:16,0:16:39.06:0,39,407 0/0:15,0:15:42.10:0,42,447 0/0:10,0:11:30.06:0,30,315 0/0:9,0:9:27.07:0,27,295 0/0:18,0:18:48.13:0,48,532 16 2223995 . C T 1001.77 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.971;DP=5774;DS;Dels=0.00;FS=3.611;HRun=0;HaplotypeScore=2.5976;InbreedingCoeff=-0.0120;MQ=58.74;MQ0=0;MQRankSum=0.444;QD=10.89;ReadPosRankSum=-0.689 GT:AD:DP:GQ:PL 0/0:130,0:130:99:0,346,4190 0/0:112,0:112:99:0,298,3608 0/0:92,0:93:99:0,250,3032 0/0:249,1:250:99:0,656,8823 0/0:229,0:229:99:0,650,8342 0/0:218,0:218:99:0,578,7501 0/0:165,0:165:99:0,430,5644 0/0:172,0:174:99:0,448,5843 0/0:114,0:114:99:0,289,3484 0/0:100,0:101:99:0,268,3195 0/0:109,0:109:99:0,295,3603 0/0:84,0:84:99:0,226,2739 0/0:97,0:97:99:0,259,3057 0/0:116,0:117:99:0,322,3844 0/0:250,0:250:99:0,647,7828 0/0:116,1:117:99:0,283,3769 0/0:132,0:132:99:0,340,4171 0/0:94,0:94:99:0,259,3117 0/0:181,0:181:99:0,457,5575 0/0:182,0:182:99:0,448,5541 0/0:205,0:207:99:0,530,6475 0/0:113,0:113:99:0,313,3754 0/0:248,0:248:99:0,689,8932 0/0:138,0:139:99:0,379,4826 0/0:188,0:188:99:0,491,6414 0/0:165,0:165:99:0,445,5714 0/0:92,0:92:99:0,244,2937 0/0:107,0:107:99:0,283,3442 0/1:50,42:92:99:1048,0,1344 0/0:105,1:106:99:0,245,3290 0/0:105,0:105:99:0,286,3428 0/0:168,1:169:99:0,383,5011 0/0:141,0:141:99:0,355,4353 0/0:86,0:86:99:0,238,2881 0/0:91,0:91:99:0,253,3040 0/0:118,0:118:99:0,313,3743 0/0:168,0:169:99:0,403,4848 0/0:95,0:95:99:0,247,3001 0/0:102,0:102:99:0,289,3480 0/0:92,0:92:99:0,256,2973 0/0:102,0:102:99:0,277,3310 0/0:98,0:98:99:0,262,3149 16 2237045 . C T 2607.82 . 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C T 1426.27 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.933;DP=5913;DS;Dels=0.00;FS=2.319;HRun=0;HaplotypeScore=4.7228;InbreedingCoeff=-0.0120;MQ=59.44;MQ0=0;MQRankSum=-0.242;QD=13.46;ReadPosRankSum=-2.448 GT:AD:DP:GQ:PL 0/0:111,0:111:99:0,289,3231 0/0:104,0:104:99:0,280,3151 0/0:92,0:92:99:0,244,2686 0/0:247,0:247:99:0,686,8457 0/0:225,0:225:99:0,617,7718 0/0:155,2:158:99:0,395,5416 0/0:183,0:184:99:0,496,6137 0/0:178,0:180:99:0,502,6183 0/0:98,0:98:99:0,259,2903 0/0:91,1:92:99:0,235,2706 0/0:113,0:113:99:0,313,3511 0/0:112,0:112:99:0,298,3396 0/0:73,0:74:99:0,192,2191 0/0:111,0:111:99:0,307,3420 0/0:246,0:246:99:0,653,7336 0/0:103,0:103:99:0,271,3102 0/0:101,0:102:99:0,283,3176 0/0:117,0:117:99:0,337,3792 0/0:177,0:177:99:0,490,5508 0/0:216,0:217:99:0,565,6478 0/0:170,0:170:99:0,481,5495 0/0:158,0:158:99:0,442,4914 0/0:241,0:242:99:0,677,8540 0/0:151,0:152:99:0,412,5236 0/0:209,0:209:99:0,551,6937 0/0:164,0:164:99:0,442,5486 0/0:75,0:75:99:0,220,2486 0/0:114,0:114:99:0,301,3309 0/0:107,0:107:99:0,295,3309 0/0:104,0:104:99:0,286,3233 0/1:53,53:106:99:1472,0,1272 0/0:200,0:201:99:0,511,5877 0/0:165,0:166:99:0,460,5183 0/0:113,0:114:99:0,316,3519 0/0:95,0:95:99:0,256,2925 0/0:128,0:129:99:0,361,3920 0/0:204,0:204:99:0,550,6245 0/0:96,0:96:99:0,262,2943 0/0:121,0:121:99:0,328,3648 0/0:110,0:110:99:0,304,3378 0/0:92,0:92:99:0,262,2941 0/0:120,0:120:99:0,328,3611 16 2257105 . C G 28831.75 . AC=32;AF=0.381;AN=84;BaseQRankSum=-23.398;DP=2973;Dels=0.00;FS=18.896;HRun=0;HaplotypeScore=2.0679;InbreedingCoeff=-0.0096;MQ=58.96;MQ0=0;MQRankSum=2.497;QD=16.77;ReadPosRankSum=-2.084 GT:AD:DP:GQ:PL 0/1:27,7:34:99:151,0,735 0/0:47,1:48:93.89:0,94,1533 0/0:48,0:48:99:0,135,1732 0/0:161,0:161:99:0,451,5966 0/1:66,72:138:99:2276,0,2183 0/1:48,64:112:99:1987,0,1533 0/1:39,45:84:99:1392,0,1149 0/0:92,0:92:99:0,259,3408 0/1:25,27:52:99:761,0,729 0/0:36,0:36:96.30:0,96,1207 1/1:0,45:45:99:1408,120,0 0/1:20,12:32:99:299,0,626 0/1:18,21:39:99:579,0,527 0/1:31,21:52:99:441,0,897 0/1:74,78:154:99:1975,0,2062 0/0:79,0:79:99:0,229,2837 1/1:0,48:48:99:1560,135,0 0/0:38,0:38:99:0,102,1287 0/0:109,0:109:99:0,292,3613 0/0:107,0:107:99:0,298,3697 0/1:60,45:105:99:1046,0,1777 0/1:30,33:63:99:830,0,869 0/0:156,0:156:99:0,448,6032 0/0:70,0:70:99:0,199,2607 0/1:42,53:95:99:1640,0,1376 0/0:83,0:83:99:0,235,3158 0/1:19,21:40:99:526,0,499 0/1:27,27:54:99:736,0,804 1/1:0,42:42:99:1337,114,0 0/1:25,26:51:99:596,0,782 0/1:34,26:60:99:661,0,1056 1/1:0,93:93:99:2892,247,0 0/0:81,0:81:99:0,223,2795 0/1:26,15:41:99:386,0,832 1/1:0,49:49:99:1533,135,0 0/0:59,0:59:99:0,160,2058 0/1:42,34:77:99:923,0,1196 0/0:41,0:41:99:0,120,1466 0/1:29,25:54:99:632,0,831 0/1:28,28:56:99:717,0,837 0/0:46,0:46:99:0,120,1548 1/1:0,49:49:99:1547,138,0 16 2259393 . C G 3822.99 . AC=9;AF=0.107;AN=84;BaseQRankSum=3.906;DP=1923;Dels=0.00;FS=12.280;HRun=0;HaplotypeScore=1.0318;InbreedingCoeff=-0.1200;MQ=59.02;MQ0=0;MQRankSum=0.279;QD=12.74;ReadPosRankSum=-1.277 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,120,1500 0/0:41,0:41:99:0,117,1448 0/1:14,7:21:99:180,0,421 0/0:95,0:95:99:0,253,3338 0/0:83,1:84:99:0,206,3061 0/0:65,0:65:99:0,178,2360 0/0:55,0:55:99:0,147,1963 0/0:58,0:58:99:0,150,1982 0/0:46,0:46:99:0,135,1672 0/1:11,15:26:99:457,0,327 0/0:35,0:35:99:0,102,1242 0/1:16,17:33:99:495,0,446 0/1:13,17:30:99:508,0,361 0/1:13,14:27:99:448,0,393 0/0:108,0:108:99:0,283,3570 0/0:38,0:38:99:0,111,1366 0/0:36,0:36:99:0,99,1226 0/1:24,7:31:99:155,0,781 0/0:55,0:57:99:0,150,1848 0/0:62,0:62:99:0,163,2052 0/0:74,0:74:99:0,196,2424 0/0:68,0:68:99:0,184,2253 0/1:55,34:89:99:1050,0,1676 0/0:48,0:48:99:0,120,1586 0/0:49,0:49:99:0,132,1698 0/0:59,0:59:99:0,166,2186 0/1:9,7:16:99:216,0,287 0/1:15,12:27:99:314,0,395 0/0:18,1:19:54.16:0,54,656 0/0:24,0:24:66.21:0,66,827 0/0:32,0:32:90.28:0,90,1109 0/0:47,0:47:99:0,120,1498 0/0:43,0:43:99:0,111,1402 0/0:28,0:28:75.21:0,75,911 0/0:33,0:33:84.26:0,84,1059 0/0:39,0:39:99:0,108,1342 0/0:52,0:52:99:0,147,1828 0/0:32,0:32:90.27:0,90,1112 0/0:40,0:40:99:0,114,1391 0/0:34,0:34:96.29:0,96,1179 0/0:31,0:31:87.27:0,87,1075 0/0:46,0:46:99:0,132,1635 16 2278509 . G A 1196.13 . AC=5;AF=0.060;AN=84;BaseQRankSum=-2.591;DP=985;Dels=0.00;FS=10.358;HRun=0;HaplotypeScore=0.6343;InbreedingCoeff=-0.0635;MQ=58.56;MQ0=0;MQRankSum=1.796;QD=12.08;ReadPosRankSum=-0.163 GT:AD:DP:GQ:PL 0/0:13,0:13:36.10:0,36,418 0/0:23,0:23:69.19:0,69,790 0/0:14,0:14:42.12:0,42,490 0/0:68,0:68:99:0,181,2305 0/0:41,0:41:99:0,114,1501 0/0:32,0:32:84.25:0,84,1049 0/0:32,0:32:90.29:0,90,1179 0/0:38,0:38:99:0,99,1264 0/0:21,0:21:57.17:0,57,685 0/0:7,0:7:21.06:0,21,247 0/0:16,0:16:39.12:0,39,472 0/1:11,8:19:99:193,0,256 0/1:6,4:10:99:108,0,176 0/0:23,0:23:60.17:0,60,721 0/0:48,0:48:99:0,132,1535 0/0:29,0:29:84.24:0,84,976 0/0:15,0:15:42.13:0,42,511 0/0:13,0:13:36.10:0,36,426 0/0:26,0:26:78.22:0,78,912 0/0:38,0:38:96.26:0,96,1158 0/1:19,14:33:99:388,0,496 0/0:20,0:20:45.13:0,45,551 0/0:61,0:61:99:0,153,1975 0/0:18,0:18:48.16:0,48,648 0/0:38,0:38:93.29:0,93,1224 0/0:33,0:33:84.27:0,84,1097 0/0:10,0:10:27.08:0,27,337 0/0:12,0:12:36.11:0,36,432 0/1:5,11:16:99:311,0,119 0/0:17,0:17:48.12:0,48,570 0/0:21,0:21:54.16:0,54,661 0/1:7,14:21:99:293,0,169 0/0:28,0:28:69.20:0,69,835 0/0:10,0:10:27.08:0,27,335 0/0:17,0:17:45.12:0,45,538 0/0:11,0:11:33.10:0,33,394 0/0:24,0:24:69.15:0,69,771 0/0:15,0:15:39.11:0,39,466 0/0:17,0:17:51.15:0,51,608 0/0:10,0:10:30.08:0,30,346 0/0:15,0:15:45.13:0,45,530 0/0:12,0:12:36.10:0,36,412 16 2282256 . G A 68504.90 . AC=84;AF=1.000;AN=84;BaseQRankSum=6.547;DP=2119;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.2062;InbreedingCoeff=-0.0000;MQ=58.75;MQ0=0;MQRankSum=0.347;QD=32.33;ReadPosRankSum=0.753 GT:AD:DP:GQ:PL 1/1:1,31:33:93.27:1076,93,0 1/1:0,28:29:78.22:905,78,0 1/1:1,30:31:87.22:982,87,0 1/1:1,112:113:99:3784,314,0 1/1:1,127:130:99:4162,364,0 1/1:1,72:75:99:2412,205,0 1/1:0,48:49:99:1643,141,0 1/1:0,81:81:99:2566,226,0 1/1:1,39:40:99:1251,111,0 1/1:0,27:27:81.18:899,81,0 1/1:0,46:46:99:1509,135,0 1/1:1,34:35:99:1130,99,0 1/1:0,30:30:87.25:1011,87,0 1/1:0,42:42:99:1445,126,0 1/1:0,98:99:99:3188,280,0 1/1:3,46:50:99:1496,132,0 1/1:1,38:39:99:1254,108,0 1/1:0,35:35:99:1155,102,0 1/1:1,49:52:99:1630,141,0 1/1:0,81:81:99:2684,238,0 1/1:2,52:54:99:1655,116,0 1/1:2,47:50:99:1509,132,0 1/1:1,116:119:99:3957,343,0 1/1:1,48:49:99:1540,138,0 1/1:0,80:80:99:2639,232,0 1/1:1,44:45:99:1435,129,0 1/1:0,29:29:84.21:949,84,0 1/1:0,32:32:96.27:1100,96,0 1/1:0,24:24:66.17:745,66,0 1/1:0,39:39:99:1227,108,0 1/1:0,29:29:84.24:972,84,0 1/1:0,65:65:99:2087,183,0 1/1:0,46:47:99:1566,138,0 1/1:1,23:24:69.19:790,69,0 1/1:0,26:26:75.17:853,75,0 1/1:1,32:34:93.25:1057,93,0 1/1:0,56:57:99:1813,156,0 1/1:0,35:35:96.26:1098,96,0 1/1:0,52:52:99:1731,153,0 1/1:0,44:44:99:1429,126,0 1/1:0,39:39:99:1234,111,0 1/1:0,28:29:81.23:934,81,0 16 2284923 . C A 8.51 . AC=2;AF=0.024;AN=82;BaseQRankSum=-1.541;DP=213;Dels=0.00;FS=7.095;HRun=1;HaplotypeScore=0.3234;InbreedingCoeff=0.1353;MQ=58.59;MQ0=0;MQRankSum=-0.725;QD=1.22;ReadPosRankSum=-1.454 GT:AD:DP:GQ:PL 0/1:3,2:5:35.73:36,0,65 0/0:3,0:3:9.03:0,9,111 0/0:5,0:6:9.02:0,9,106 0/0:5,0:5:15.04:0,15,177 0/0:7,0:7:18.06:0,18,229 0/0:3,0:3:9.03:0,9,108 0/0:3,0:3:9.02:0,9,101 0/0:5,0:5:12.03:0,12,147 0/0:3,0:3:9.02:0,9,98 0/0:1,0:1:3.01:0,3,36 0/0:4,0:4:9.01:0,9,101 0/0:10,0:10:27.09:0,27,339 0/0:2,0:2:6.01:0,6,62 0/0:5,0:5:15.05:0,15,181 0/0:13,0:13:39.10:0,39,447 0/0:6,0:6:18.05:0,18,215 0/0:5,0:5:12.04:0,12,151 0/0:2,0:2:6.02:0,6,73 0/0:9,0:9:27.08:0,27,314 0/0:9,0:9:27.07:0,27,309 0/0:12,0:12:30.07:0,30,350 0/0:4,0:4:9.03:0,9,109 0/0:4,0:4:12.04:0,12,157 0/0:4,0:4:12.04:0,12,158 0/0:5,0:5:15.05:0,15,196 0/0:3,0:3:9.03:0,9,112 0/0:2,0:2:6.02:0,6,69 0/0:2,1:3:6.02:0,6,70 0/0:5,0:5:15.04:0,15,178 0/0:6,0:6:18.05:0,18,199 ./. 0/0:9,0:9:24.05:0,24,277 0/0:4,0:4:9.02:0,9,104 0/0:4,0:4:12.04:0,12,144 0/0:4,0:4:6.02:0,6,75 0/0:6,0:6:15.04:0,15,182 0/0:9,0:9:27.05:0,27,294 0/0:3,0:3:9.03:0,9,111 0/0:5,1:6:0.85:7,0,148 0/0:6,0:6:15.05:0,15,193 0/1:1,1:2:1.76:35,3,0 0/0:4,0:4:12.03:0,12,132 16 2286876 . C A 11.51 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.671;DP=253;Dels=0.00;FS=5.553;HRun=0;HaplotypeScore=0.2795;InbreedingCoeff=-0.0657;MQ=57.93;MQ0=0;MQRankSum=0.219;QD=1.05;ReadPosRankSum=0.608 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,190 0/0:9,0:9:21.06:0,21,249 0/0:2,0:2:6.02:0,6,74 0/0:19,0:19:45.13:0,45,572 0/1:4,2:6:52.43:52,0,135 0/0:3,0:3:9.03:0,9,117 0/0:3,0:4:9.03:0,9,113 0/0:9,0:9:24.07:0,24,303 0/0:3,0:3:9.03:0,9,112 0/0:8,0:8:15.05:0,15,202 0/0:4,0:4:12.04:0,12,147 0/0:6,0:6:12.04:0,12,158 0/0:2,0:2:6.02:0,6,75 0/0:5,0:5:12.02:0,12,132 0/0:15,0:15:36.12:0,36,458 0/0:4,0:4:9.01:0,9,97 0/0:4,0:4:12.04:0,12,152 0/0:4,0:4:12.04:0,12,150 0/0:7,0:7:18.06:0,18,219 0/0:6,0:6:18.05:0,18,214 0/1:4,1:5:18.39:18,0,138 0/0:6,0:6:18.05:0,18,220 0/0:21,0:21:45.15:0,45,599 0/0:7,0:7:18.04:0,18,225 0/0:9,0:9:24.08:0,24,309 0/0:4,0:4:12.04:0,12,146 0/0:4,0:4:9.03:0,9,122 0/0:5,0:5:12.04:0,12,149 0/0:4,0:4:9.03:0,9,122 0/0:9,0:9:24.08:0,24,299 0/0:3,0:3:9.03:0,9,114 0/0:9,0:9:24.06:0,24,281 0/0:7,0:7:18.06:0,18,238 0/0:4,0:4:12.04:0,12,142 0/0:8,0:8:18.03:0,18,191 0/0:3,0:3:9.02:0,9,101 0/0:9,0:9:21.03:0,21,234 0/0:2,0:2:6.02:0,6,75 0/0:2,0:2:3.01:0,3,38 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:3.01:0,3,37 0/0:4,0:4:12.04:0,12,147 16 2314248 . C A 928.94 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.281;DP=4698;DS;Dels=0.00;FS=0.661;HRun=0;HaplotypeScore=2.2539;InbreedingCoeff=-0.0120;MQ=43.40;MQ0=373;MQRankSum=0.097;QD=13.27;ReadPosRankSum=0.790 GT:AD:DP:GQ:PL 0/0:87,0:87:99:0,220,2481 0/0:74,0:74:99:0,193,2237 0/0:65,0:65:99:0,165,1862 0/0:247,1:249:99:0,647,7998 0/0:215,0:215:99:0,563,6772 0/0:160,0:160:99:0,391,4689 0/0:146,0:147:99:0,376,4534 0/0:163,0:163:99:0,427,5103 0/0:101,0:101:99:0,232,2717 0/0:56,0:56:99:0,141,1612 0/0:86,0:86:99:0,235,2639 0/0:64,0:65:99:0,171,1977 0/0:69,0:69:99:0,165,1926 0/0:72,0:72:99:0,193,2182 0/0:249,1:250:99:0,611,7131 0/0:69,0:69:99:0,193,2214 0/0:79,0:79:99:0,205,2386 0/0:73,0:73:99:0,190,2177 0/0:170,1:171:99:0,412,4849 0/0:143,0:143:99:0,367,4256 0/0:142,1:144:99:0,322,3746 0/0:83,0:83:99:0,214,2425 0/0:242,0:242:99:0,650,7859 0/0:149,0:149:99:0,373,4517 0/0:176,0:176:99:0,436,5283 0/0:146,0:146:99:0,370,4350 0/0:46,0:46:99:0,126,1378 0/0:85,0:85:99:0,223,2501 0/0:85,0:85:99:0,223,2551 0/0:88,0:88:99:0,217,2473 0/0:74,0:74:99:0,193,2240 0/0:150,0:152:99:0,346,4093 0/0:88,0:88:99:0,211,2406 0/0:76,0:76:99:0,196,2239 0/1:32,38:70:99:975,0,688 0/0:78,0:78:99:0,202,2314 0/0:134,0:135:99:0,343,3948 0/0:77,0:78:99:0,177,2038 0/0:79,0:79:99:0,214,2449 0/0:80,0:80:99:0,220,2516 0/0:76,0:76:99:0,199,2183 0/0:73,0:73:99:0,180,2112 16 2483047 . G A 203 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.353;DP=923;Dels=0.00;FS=1.353;HRun=0;HaplotypeScore=0.7651;InbreedingCoeff=-0.0124;MQ=58.86;MQ0=0;MQRankSum=0.403;QD=10.15;ReadPosRankSum=-0.114 GT:AD:DP:GQ:PL 0/0:20,0:20:54.16:0,54,689 0/0:25,0:25:63.19:0,63,803 0/0:13,0:13:39.12:0,39,498 0/0:39,0:39:99:0,102,1334 0/0:35,1:36:58.51:0,59,1201 0/0:23,0:23:63.19:0,63,815 0/0:28,0:28:81.26:0,81,1083 0/0:29,0:29:72.23:0,72,963 0/0:18,0:18:51.16:0,51,645 0/0:7,0:7:21.07:0,21,266 0/0:29,0:29:78.23:0,78,965 0/0:20,0:20:48.14:0,48,601 0/0:7,0:7:18.06:0,18,231 0/0:14,0:14:42.13:0,42,512 0/0:49,0:50:99:0,129,1627 0/0:12,0:12:36.12:0,36,458 0/0:20,0:20:54.16:0,54,687 0/0:19,0:19:57.17:0,57,691 0/0:31,0:31:84.25:0,84,1034 0/0:21,0:21:48.13:0,48,613 0/0:22,0:22:60.18:0,60,746 0/1:11,9:20:99:249,0,325 0/0:33,0:33:90.27:0,90,1165 0/0:11,0:11:27.09:0,27,370 0/0:17,0:17:51.15:0,51,681 0/0:13,0:13:39.10:0,39,489 0/0:19,0:19:48.15:0,48,620 0/0:15,0:15:45.13:0,45,542 0/0:14,0:14:36.08:0,36,437 0/0:15,0:15:45.14:0,45,548 0/0:18,0:18:54.17:0,54,678 0/0:27,0:27:63.20:0,63,828 0/0:26,0:26:69.22:0,69,900 0/0:20,0:20:51.16:0,51,672 0/0:22,0:23:60.19:0,60,785 0/0:21,0:21:57.16:0,57,709 0/0:22,0:22:57.17:0,57,712 0/0:21,0:21:60.19:0,60,757 0/0:30,0:30:81.25:0,81,1035 0/0:26,0:26:69.21:0,69,864 0/0:24,0:24:63.18:0,63,767 0/0:25,0:25:66.21:0,66,846 16 2512523 . G A 5270.82 . AC=20;AF=0.238;AN=84;BaseQRankSum=0.976;DP=722;Dels=0.00;FS=21.875;HRun=0;HaplotypeScore=0.9105;InbreedingCoeff=-0.3121;MQ=58.73;MQ0=0;MQRankSum=-0.459;QD=12.89;ReadPosRankSum=1.984 GT:AD:DP:GQ:PL 0/0:11,0:11:30.09:0,30,365 0/0:9,0:9:24.05:0,24,287 0/0:8,0:8:24.07:0,24,277 0/1:25,24:49:99:754,0,793 0/1:25,19:44:99:593,0,808 0/1:14,11:25:99:355,0,404 0/0:20,0:20:60.18:0,60,784 0/1:11,11:22:99:324,0,311 0/0:10,0:10:24.07:0,24,302 0/1:7,3:10:77.27:77,0,225 0/1:1,2:3:23.48:53,0,23 0/0:13,0:13:33.10:0,33,420 0/1:9,5:14:99:132,0,161 0/0:13,0:13:33.08:0,33,383 0/1:17,20:37:99:513,0,450 0/1:8,3:11:81.29:81,0,186 0/1:2,8:10:52.30:206,0,52 0/0:15,0:15:39.12:0,39,499 0/0:32,0:32:84.24:0,84,1023 0/0:20,0:20:54.16:0,54,669 0/1:13,10:23:99:294,0,385 0/1:17,6:23:99:158,0,430 0/1:36,23:59:99:710,0,1181 0/0:12,0:12:36.08:0,36,429 0/0:15,0:15:39.12:0,39,505 0/0:16,0:16:45.15:0,45,590 0/1:6,2:8:56.72:57,0,133 0/0:11,0:11:30.09:0,30,373 0/1:6,7:13:99:159,0,168 0/0:18,0:18:48.13:0,48,547 0/0:14,0:14:42.11:0,42,488 0/0:27,0:27:63.19:0,63,794 0/0:10,0:10:27.08:0,27,327 0/1:1,6:7:23.53:137,0,24 0/0:7,0:7:21.06:0,21,239 0/1:7,6:13:99:159,0,222 0/1:5,9:14:99:294,0,136 0/0:9,0:9:27.08:0,27,324 0/1:8,2:10:35.18:35,0,257 0/0:11,0:11:33.10:0,33,401 0/1:8,6:14:99:180,0,245 0/0:12,0:12:30.09:0,30,386 16 2550406 . G A 173.64 . AC=3;AF=0.036;AN=84;BaseQRankSum=-0.225;DP=303;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3986;InbreedingCoeff=-0.0802;MQ=57.63;MQ0=1;MQRankSum=0.755;QD=9.14;ReadPosRankSum=-1.352 GT:AD:DP:GQ:PL 0/0:4,0:4:6.01:0,6,57 0/0:9,0:9:24.07:0,24,287 0/0:4,0:4:12.03:0,12,129 0/0:12,0:12:33.10:0,33,420 0/0:18,1:19:42.13:0,42,523 0/0:3,0:3:6.02:0,6,69 0/0:6,0:7:12.04:0,12,160 0/0:8,0:8:18.02:0,18,190 0/1:3,3:7:76.12:76,0,89 0/0:4,0:4:12.04:0,12,147 0/1:3,5:9:82.67:146,0,83 0/0:7,0:7:18.02:0,18,191 0/0:8,0:9:21.05:0,21,243 0/0:9,0:9:18.05:0,18,222 0/0:13,0:13:33.09:0,33,386 0/0:9,0:9:18.05:0,18,214 0/0:6,0:6:18.04:0,18,188 0/0:3,0:3:3.01:0,3,32 0/0:8,0:8:21.06:0,21,233 0/0:15,0:15:42.10:0,42,461 0/0:9,0:10:27.05:0,27,293 0/0:6,0:6:12.04:0,12,143 0/0:8,0:9:12.04:0,12,148 0/0:9,1:10:1.07:6,0,231 0/0:4,0:4:6.01:0,6,62 0/0:1,0:1:3.01:0,3,31 0/0:5,0:5:15.03:0,15,160 0/0:7,0:7:18.05:0,18,193 0/0:3,0:3:9.02:0,9,92 0/0:5,0:5:12.03:0,12,146 0/0:3,0:3:9.03:0,9,107 0/0:9,0:9:18.05:0,18,202 0/0:11,0:11:24.03:0,24,247 0/0:4,0:4:9.03:0,9,108 0/0:5,0:5:12.03:0,12,136 0/0:6,0:6:12.03:0,12,137 0/0:14,0:14:33.08:0,33,364 0/1:2,1:3:24.41:24,0,60 0/0:7,0:7:18.03:0,18,186 0/0:8,0:8:24.04:0,24,262 0/0:3,0:3:9.02:0,9,101 0/0:5,0:5:9.02:0,9,93 16 2550466 . G A 287.65 . AC=4;AF=0.048;AN=84;BaseQRankSum=-0.688;DP=269;Dels=0.00;FS=2.491;HRun=0;HaplotypeScore=0.4807;InbreedingCoeff=0.1811;MQ=57.64;MQ0=0;MQRankSum=0.449;QD=7.77;ReadPosRankSum=-0.304 GT:AD:DP:GQ:PL 0/0:5,0:5:12.03:0,12,137 0/0:5,0:5:12.03:0,12,135 0/0:6,0:6:18.06:0,18,226 0/0:6,0:6:12.04:0,12,156 0/0:8,0:8:21.07:0,21,266 0/0:6,0:6:12.02:0,12,139 0/0:5,0:5:15.03:0,15,176 0/0:5,0:5:12.04:0,12,151 0/0:5,0:5:15.05:0,15,191 0/0:3,0:3:9.01:0,9,92 0/0:9,0:9:18.05:0,18,216 0/0:5,0:5:12.03:0,12,136 0/0:5,0:5:12.03:0,12,136 0/0:10,0:10:24.07:0,24,292 0/0:16,0:16:36.10:0,36,425 0/0:9,0:9:27.08:0,27,316 0/0:7,0:7:21.04:0,21,243 0/0:2,0:2:6.02:0,6,69 0/1:5,8:13:99:167,0,149 0/1:10,5:15:84.59:85,0,261 0/0:10,0:10:24.06:0,24,267 0/0:6,0:6:12.04:0,12,152 0/0:2,0:2:6.02:0,6,79 0/1:0,3:3:0.51:107,9,0 0/0:4,0:4:6.02:0,6,79 0/0:4,0:4:12.04:0,12,149 0/0:5,0:5:15.04:0,15,169 0/0:4,0:4:12.04:0,12,147 0/0:3,0:3:6.01:0,6,67 0/0:4,0:4:12.04:0,12,147 0/1:5,1:6:23.22:23,0,87 0/0:8,0:8:18.05:0,18,217 0/0:9,0:9:21.07:0,21,264 0/0:3,0:3:9.01:0,9,92 0/0:7,0:7:18.05:0,18,214 0/0:4,0:4:12.04:0,12,144 0/0:10,0:10:27.07:0,27,311 0/0:8,0:8:21.06:0,21,254 0/0:12,0:12:33.09:0,33,386 0/0:4,0:4:12.04:0,12,145 0/0:6,0:6:15.04:0,15,186 0/0:2,0:2:6.02:0,6,71 16 2578288 . C G 6.02 . AC=1;AF=0.012;AN=84;BaseQRankSum=-10.870;DP=1650;Dels=0.00;FS=102.283;HRun=1;HaplotypeScore=1.3052;InbreedingCoeff=-0.0325;MQ=58.47;MQ0=0;MQRankSum=-0.574;QD=0.16;ReadPosRankSum=-7.097 GT:AD:DP:GQ:PL 0/0:15,1:16:36.07:0,36,407 0/0:29,2:31:63.15:0,63,751 0/0:13,2:15:18.04:0,18,212 0/0:103,8:113:99:0,205,2646 0/0:93,12:105:99:0,200,2756 0/0:49,6:55:99:0,120,1410 0/0:49,3:52:79.58:0,80,1230 0/0:49,6:55:80.64:0,81,1269 0/1:29,8:37:50.26:50,0,600 0/0:23,1:25:57.14:0,57,650 0/0:23,0:23:48.11:0,48,543 0/0:16,5:21:45.10:0,45,528 0/0:23,1:24:45.14:0,45,560 0/0:21,3:24:45.11:0,45,520 0/0:67,16:84:64.56:0,65,1631 0/0:29,3:32:48.49:0,48,785 0/0:22,5:27:23.19:0,23,624 0/0:11,1:12:2.72:1,0,248 0/0:37,3:40:81.23:0,81,966 0/0:61,3:64:99:0,135,1644 0/0:26,8:34:31.60:0,32,648 0/0:31,4:36:69.15:0,69,815 0/0:110,14:125:99:0,232,3263 0/0:43,3:46:96.30:0,96,1255 0/0:54,4:58:99:0,120,1477 0/0:36,6:42:72.21:0,72,890 0/0:20,1:21:51.15:0,51,616 0/0:25,3:28:57.13:0,57,706 0/0:10,1:11:0.71:7,0,221 0/0:18,3:21:24.41:0,24,517 0/0:29,3:32:75.21:0,75,891 0/0:43,8:53:75.57:0,76,1161 0/0:38,2:40:80.68:0,81,957 0/0:22,4:26:31.45:0,31,633 0/0:22,2:24:48.12:0,48,586 0/0:22,3:25:27.55:0,28,635 0/0:34,8:42:87.22:0,87,1024 0/0:29,3:32:55.97:0,56,688 0/0:26,1:27:60.13:0,60,678 0/0:22,2:24:57.18:0,57,713 0/0:17,6:23:5.49:0,5,348 0/0:22,3:25:19.42:0,19,475 16 2578680 . C G 296.48 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.703;DP=2091;Dels=0.00;FS=2.491;HRun=0;HaplotypeScore=2.7287;InbreedingCoeff=-0.0120;MQ=58.65;MQ0=0;MQRankSum=1.620;QD=7.60;ReadPosRankSum=0.305 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,105,1300 0/0:33,0:33:93.24:0,93,1102 0/0:41,0:41:99:0,102,1270 0/0:111,0:111:99:0,298,3787 0/0:89,0:89:99:0,235,2989 0/0:73,0:73:99:0,190,2406 0/0:54,0:54:99:0,147,1878 0/0:71,0:71:99:0,174,2106 0/0:33,0:33:90.27:0,90,1094 0/0:41,0:41:99:0,99,1234 0/0:42,0:42:99:0,111,1345 0/0:37,0:37:99:0,102,1246 0/0:39,0:39:99:0,102,1255 0/0:35,0:35:99:0,99,1192 0/0:117,0:117:99:0,307,3696 0/0:52,0:52:99:0,138,1684 0/0:53,0:53:99:0,129,1631 0/0:35,0:35:96.26:0,96,1128 0/0:67,0:67:99:0,174,2075 0/0:59,0:59:99:0,159,1970 0/0:39,0:40:99:0,102,1219 0/0:40,0:40:99:0,99,1205 0/0:105,0:105:99:0,268,3408 0/0:54,0:54:99:0,138,1795 0/0:53,0:53:99:0,135,1744 0/0:54,0:54:99:0,135,1724 0/0:34,0:34:90.27:0,90,1117 0/1:21,18:39:99:343,0,498 0/0:34,0:34:90.28:0,90,1121 0/0:35,0:35:87.26:0,87,1085 0/0:31,0:31:84.24:0,84,1004 0/0:55,1:56:99:0,135,1698 0/0:47,0:47:99:0,123,1535 0/0:30,0:30:84.24:0,84,1024 0/0:42,0:42:99:0,111,1395 0/0:42,0:42:99:0,111,1321 0/0:61,0:62:99:0,162,1943 0/0:32,0:32:81.20:0,81,934 0/0:35,0:35:93.26:0,93,1131 0/0:34,0:34:93.24:0,93,1095 0/0:35,0:35:87.25:0,87,1061 0/0:34,0:34:90.27:0,90,1088 16 2607730 . C T 793.42 . AC=27;AF=0.450;AN=60;BaseQRankSum=-7.462;DP=7692;DS;Dels=0.00;FS=3.245;HRun=0;HaplotypeScore=0.5341;InbreedingCoeff=-0.0510;MQ=3.39;MQ0=7391;MQRankSum=5.463;QD=0.23;ReadPosRankSum=-0.955 GT:AD:DP:GQ:PL 0/0:157,0:157:3.01:0,3,33 0/0:164,0:165:3.01:0,3,30 0/1:139,0:139:1.76:0,3,27 ./. 0/0:236,1:237:3:0,3,27 0/0:247,1:248:6:0,6,53 ./. ./. 0/1:128,45:173:38.35:63,0,38 1/1:118,25:143:3:27,3,0 0/1:98,32:130:17.67:44,0,18 0/1:107,29:136:14.67:68,0,15 0/1:140,0:140:1.76:0,3,23 0/1:123,27:151:17.67:44,0,18 0/0:250,0:250:3:0,3,27 ./. ./. 1/1:109,38:147:6:53,6,0 0/1:173,67:241:17.67:44,0,18 0/1:160,73:233:62.02:62,0,65 1/1:123,106:229:6:53,6,0 0/1:131,48:180:17.67:18,0,44 ./. ./. ./. 0/1:161,73:234:11.67:92,0,12 1/1:87,29:117:9:80,9,0 1/1:117,36:153:3:27,3,0 1/1:100,32:133:6:53,6,0 ./. 0/1:115,36:151:20.67:21,0,21 0/1:162,72:234:41.35:41,0,41 0/0:194,0:194:9.01:0,9,83 ./. 0/0:165,0:165:6:0,6,53 1/1:135,49:184:9:80,9,0 0/0:228,0:231:9:0,9,80 ./. 0/0:99,47:146:3:0,3,27 ./. 0/0:117,2:119:3:0,3,27 0/1:135,32:167:59.02:59,0,85 16 2764082 . G C 457.62 . AC=11;AF=0.131;AN=84;BaseQRankSum=-20.726;DP=4409;DS;Dels=0.00;FS=1797.872;HRun=4;HaplotypeScore=3.4535;InbreedingCoeff=-0.1646;MQ=58.88;MQ0=0;MQRankSum=1.467;QD=0.43;ReadPosRankSum=-22.979 GT:AD:DP:GQ:PL 0/0:39,15:54:0.14:0,0,985 0/0:48,32:80:11.84:0,12,1443 0/0:42,10:52:49:0,49,1190 0/0:156,93:250:99:0,145,5051 0/0:145,100:245:73.80:0,74,4764 0/0:114,63:177:99:0,125,3689 0/0:99,48:148:99:0,215,3210 0/0:94,62:156:99:0,182,2776 0/1:43,30:74:76.23:76,0,1135 0/1:37,24:61:17.82:18,0,1076 0/1:45,21:66:23.11:23,0,1311 0/0:48,24:72:28.02:0,28,1291 0/0:36,16:53:71.99:0,72,1173 0/0:43,32:75:34.92:0,35,1371 0/0:166,84:250:4.07:0,4,4948 0/0:42,21:63:87.65:0,88,1376 0/0:60,27:87:36.62:0,37,1719 0/0:38,25:63:0.13:0,0,918 0/1:76,41:118:43.60:44,0,2004 0/0:110,43:153:99:0,277,3455 0/1:76,54:131:95.45:95,0,2129 0/0:53,32:85:99:0,146,1785 0/1:143,106:250:29.67:30,0,4660 0/0:98,62:161:58.10:0,58,2950 0/0:100,58:159:99:0,158,2928 0/0:95,38:133:99:0,206,3155 0/0:38,14:52:38.58:0,39,1161 0/1:33,27:60:1.12:1,0,959 0/1:39,22:61:70.61:71,0,1129 0/0:37,17:55:32.73:0,33,1124 0/0:48,17:65:70.34:0,70,1516 0/0:111,51:162:99:0,219,3311 0/0:63,29:92:99:0,111,2100 0/0:49,22:71:55.91:0,56,1368 0/0:46,19:65:99:0,116,1413 0/1:44,16:60:37.92:38,0,1082 0/1:81,40:121:99:148,0,2335 0/0:56,19:75:35.85:0,36,1546 0/0:49,30:79:64.37:0,64,1478 0/0:29,23:53:38.22:0,38,874 0/1:31,22:53:45.24:45,0,877 0/0:47,22:69:30.65:0,31,1409 16 2764082 . G GC 1015.70 . 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A C 60.74 . AC=7;AF=0.083;AN=84;BaseQRankSum=-13.463;DP=936;Dels=0.00;FS=69.247;HRun=2;HaplotypeScore=0.7649;InbreedingCoeff=-0.1262;MQ=58.23;MQ0=0;MQRankSum=1.093;QD=0.32;ReadPosRankSum=-2.963 GT:AD:DP:GQ:PL 0/0:17,0:17:48.13:0,48,541 0/0:13,2:15:30.07:0,30,334 0/0:9,9:18:1.15:5,0,268 0/0:30,13:43:63.58:0,64,963 0/0:24,7:31:72.19:0,72,832 0/0:25,7:32:50.47:0,50,744 0/0:21,5:27:31.50:0,32,621 0/0:12,3:15:36.10:0,36,418 0/0:10,4:14:30.06:0,30,328 0/0:12,3:16:36.08:0,36,396 0/0:14,3:17:42.11:0,42,472 0/0:9,3:12:27.05:0,27,299 0/0:12,4:16:36.06:0,36,378 0/0:7,6:13:1.28:5,0,187 0/0:37,15:53:73.93:0,74,1173 0/0:17,8:25:16.31:0,16,511 0/0:13,7:20:1.71:0,2,318 0/1:14,11:25:7.17:7,0,419 0/1:18,10:28:23.71:24,0,532 0/0:23,6:29:63.13:0,63,682 0/1:21,8:30:28.10:28,0,556 0/0:21,2:23:60.13:0,60,655 0/1:32,23:55:21.08:21,0,939 0/0:20,4:24:51.12:0,51,586 0/0:22,5:27:41.45:0,41,683 0/0:17,5:22:45.07:0,45,468 0/0:5,2:7:15.04:0,15,173 0/1:13,5:18:26.57:27,0,367 0/0:16,4:20:22.47:0,22,508 0/1:14,5:19:47.59:48,0,388 0/0:17,1:19:45.10:0,45,489 0/0:27,12:39:75.19:0,75,854 0/0:20,4:24:57.13:0,57,614 0/0:18,2:20:48.11:0,48,534 0/0:7,4:11:1.30:5,0,223 0/0:15,3:18:45.12:0,45,525 0/1:12,5:17:6.28:6,0,376 0/0:13,3:16:19.41:0,19,420 0/0:13,5:18:17.41:0,17,407 0/0:11,3:14:33.08:0,33,379 0/0:5,3:8:15.04:0,15,170 0/0:15,5:21:25.41:0,25,473 16 2810454 . A G 1118.38 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.999;DP=2322;Dels=0.00;FS=10.674;HRun=0;HaplotypeScore=1.2583;InbreedingCoeff=-0.0244;MQ=59.25;MQ0=0;MQRankSum=1.112;QD=10.65;ReadPosRankSum=-0.731 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,138,1694 0/0:46,0:46:99:0,114,1395 0/0:50,0:50:99:0,141,1744 0/0:61,0:61:99:0,169,2093 0/0:78,0:78:99:0,202,2524 0/0:51,0:51:99:0,126,1648 0/0:38,0:38:99:0,102,1293 0/0:50,0:50:99:0,138,1730 0/0:52,0:52:99:0,135,1682 0/0:56,0:56:99:0,138,1739 0/0:41,0:41:99:0,108,1351 0/1:22,23:45:99:692,0,574 0/0:38,0:38:93.28:0,93,1161 0/1:41,19:60:99:489,0,1133 0/0:167,0:168:99:0,406,5142 0/0:40,0:40:99:0,111,1352 0/0:50,0:50:99:0,138,1685 0/0:50,0:50:99:0,123,1574 0/0:71,0:71:99:0,175,2190 0/0:118,0:118:99:0,286,3668 0/0:77,0:77:99:0,193,2451 0/0:50,0:50:99:0,126,1543 0/0:77,0:77:99:0,211,2657 0/0:38,0:38:99:0,102,1295 0/0:43,0:43:99:0,108,1377 0/0:38,0:38:99:0,105,1301 0/0:29,0:29:75.24:0,75,942 0/0:59,0:59:99:0,150,1848 0/0:42,0:42:99:0,114,1423 0/0:58,0:58:99:0,147,1842 0/0:35,0:35:96.28:0,96,1168 0/0:81,0:81:99:0,214,2706 0/0:53,0:54:99:0,150,1842 0/0:42,0:42:99:0,120,1483 0/0:37,0:37:93.29:0,93,1165 0/0:52,0:52:99:0,135,1696 0/0:77,0:77:99:0,199,2481 0/0:47,0:47:99:0,123,1534 0/0:37,0:37:99:0,102,1250 0/0:53,0:53:99:0,150,1858 0/0:36,0:36:99:0,99,1213 0/0:47,0:47:99:0,135,1682 16 2810469 . C T 1576.38 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.088;DP=2173;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.8404;InbreedingCoeff=-0.0244;MQ=59.25;MQ0=0;MQRankSum=0.460;QD=11.76;ReadPosRankSum=0.370 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,138,1776 0/0:38,0:38:99:0,102,1324 0/0:52,0:52:99:0,138,1757 0/1:41,21:62:99:579,0,1322 0/1:36,36:72:99:1060,0,1145 0/0:45,0:45:99:0,120,1621 0/0:33,0:33:87.29:0,87,1196 0/0:41,0:41:99:0,114,1515 0/0:50,0:50:99:0,135,1759 0/0:53,0:53:99:0,123,1613 0/0:46,0:46:99:0,123,1584 0/0:46,0:46:99:0,132,1675 0/0:40,0:40:99:0,108,1392 0/0:51,0:51:99:0,129,1702 0/0:158,0:158:99:0,406,5302 0/0:38,0:38:99:0,102,1318 0/0:46,0:46:99:0,123,1564 0/0:41,0:41:99:0,117,1512 0/0:68,0:68:99:0,187,2343 0/0:119,0:119:99:0,298,3855 0/0:77,0:77:99:0,205,2632 0/0:51,0:51:99:0,135,1746 0/0:66,0:66:99:0,166,2266 0/0:35,0:35:99:0,102,1401 0/0:44,0:44:99:0,114,1544 0/0:35,0:35:99:0,99,1341 0/0:31,0:31:87.27:0,87,1104 0/0:47,0:47:99:0,132,1680 0/0:41,0:41:99:0,108,1417 0/0:44,0:44:99:0,117,1520 0/0:32,0:32:96.31:0,96,1247 0/0:76,0:76:99:0,205,2666 0/0:49,0:49:99:0,138,1752 0/0:37,0:38:99:0,108,1383 0/0:35,0:35:93.29:0,93,1187 0/0:48,0:48:99:0,138,1789 0/0:75,0:75:99:0,184,2378 0/0:45,0:45:99:0,126,1602 0/0:27,0:27:81.23:0,81,1018 0/0:54,0:54:99:0,144,1848 0/0:34,0:34:96.30:0,96,1223 0/0:41,0:41:99:0,108,1406 16 2819026 . G A 1944.08 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.216;DP=1435;Dels=0.00;FS=2.157;HRun=1;HaplotypeScore=0.7675;InbreedingCoeff=-0.0247;MQ=58.56;MQ0=0;MQRankSum=0.968;QD=11.57;ReadPosRankSum=1.436 GT:AD:DP:GQ:PL 0/0:16,0:16:39.12:0,39,503 0/0:28,0:28:72.22:0,72,919 0/0:14,0:14:39.10:0,39,482 0/1:50,47:97:99:1218,0,1326 0/1:42,29:71:99:788,0,1127 0/0:70,0:70:99:0,181,2369 0/0:37,0:38:96.30:0,96,1263 0/0:61,0:61:99:0,150,2024 0/0:22,0:22:57.18:0,57,734 0/0:15,0:15:39.09:0,39,488 0/0:21,0:21:60.16:0,60,720 0/0:20,0:20:54.14:0,54,637 0/0:8,0:8:18.05:0,18,214 0/0:24,0:24:69.21:0,69,854 0/0:83,0:83:99:0,229,2780 0/0:23,0:23:69.21:0,69,855 0/0:19,1:20:23.18:0,23,655 0/0:20,0:20:57.14:0,57,693 0/0:47,0:47:99:0,123,1457 0/0:52,2:54:99:0,103,1744 0/0:34,0:34:99:0,102,1202 0/0:24,0:24:66.17:0,66,812 0/0:98,0:98:99:0,229,3128 0/0:48,0:48:99:0,132,1704 0/0:44,0:44:99:0,108,1472 0/0:48,0:48:99:0,117,1566 0/0:13,0:13:33.11:0,33,438 0/0:9,0:9:27.08:0,27,326 0/0:14,0:14:36.10:0,36,431 0/0:18,0:18:48.15:0,48,619 0/0:28,0:28:72.21:0,72,906 0/0:48,0:48:99:0,123,1568 0/0:24,0:24:69.20:0,69,866 0/0:23,0:23:66.21:0,66,846 0/0:25,0:25:72.22:0,72,892 0/0:26,0:26:72.22:0,72,919 0/0:41,0:41:99:0,117,1396 0/0:25,0:25:66.17:0,66,793 0/0:24,0:24:69.21:0,69,864 0/0:21,0:21:57.17:0,57,725 0/0:22,0:22:54.15:0,54,651 0/0:26,0:26:75.23:0,75,931 16 2819142 . T C 908.05 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.204;DP=2059;Dels=0.00;FS=0.692;HRun=1;HaplotypeScore=1.2928;InbreedingCoeff=-0.0244;MQ=58.63;MQ0=1;MQRankSum=1.929;QD=14.65;ReadPosRankSum=-1.354 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,102,1271 0/0:30,0:30:87.26:0,87,1056 0/0:32,0:32:87.27:0,87,1075 0/0:82,0:82:99:0,247,3121 0/0:86,0:86:99:0,259,3278 0/0:63,0:63:99:0,187,2373 0/0:61,0:61:99:0,181,2315 0/0:51,0:51:99:0,147,1882 0/0:42,0:42:99:0,120,1480 0/0:30,0:30:87.23:0,87,1046 0/0:29,0:29:87.27:0,87,1069 0/0:37,0:37:99:0,108,1300 0/0:25,0:25:66.19:0,66,821 0/0:33,0:33:99:0,99,1217 0/0:144,0:144:99:0,382,4729 0/0:36,0:36:99:0,108,1311 0/0:29,0:29:84.26:0,84,1040 0/0:30,0:30:87.27:0,87,1075 0/0:76,0:76:99:0,214,2681 0/0:74,0:74:99:0,214,2642 0/0:82,0:82:99:0,229,2869 0/0:46,0:46:99:0,138,1661 0/0:116,0:116:99:0,346,4393 0/0:51,0:51:99:0,150,1927 0/0:62,0:62:99:0,187,2402 0/0:49,0:49:99:0,138,1778 0/0:22,0:22:63.18:0,63,765 0/0:33,0:33:87.24:0,87,1069 0/0:22,0:22:66.18:0,66,797 0/0:32,0:32:93.28:0,93,1145 0/0:40,0:40:99:0,117,1442 0/0:82,0:82:99:0,232,2894 0/0:38,0:38:99:0,108,1316 0/0:27,0:27:72.21:0,72,873 0/0:25,0:25:72.22:0,72,894 0/0:34,0:34:93.29:0,93,1173 0/0:73,1:74:99:0,196,2424 0/0:44,0:44:99:0,129,1572 0/0:51,0:51:99:0,153,1867 0/1:17,16:33:99:502,0,512 0/1:13,16:29:99:469,0,399 0/0:40,0:40:99:0,114,1424 16 2821525 . G A 7369.11 . AC=8;AF=0.095;AN=84;BaseQRankSum=-2.046;DP=3108;Dels=0.00;FS=8.236;HRun=0;HaplotypeScore=1.8671;InbreedingCoeff=-0.1053;MQ=59.44;MQ0=0;MQRankSum=-1.711;QD=14.56;ReadPosRankSum=-1.259 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,138,1588 0/0:61,0:62:99:0,171,1998 0/0:42,0:42:99:0,117,1360 0/0:182,1:183:99:0,496,6487 0/0:163,0:163:99:0,460,5817 0/0:101,0:101:99:0,292,3621 0/1:51,66:117:99:1960,0,1438 0/0:125,0:125:99:0,361,4511 0/0:44,0:44:99:0,126,1471 0/1:27,23:50:99:577,0,734 0/0:57,0:57:99:0,165,1898 0/1:26,18:44:99:478,0,756 0/1:21,27:48:99:800,0,558 0/0:67,0:67:99:0,193,2206 0/0:164,0:166:99:0,436,5087 0/0:50,0:50:99:0,147,1681 0/0:60,0:60:99:0,159,1863 0/0:54,0:54:99:0,153,1779 0/0:78,0:81:99:0,214,2511 0/0:84,0:85:99:0,238,2782 0/0:89,0:89:99:0,244,2815 0/0:57,0:58:99:0,162,1884 0/0:156,0:156:99:0,451,5715 0/0:97,0:97:99:0,259,3332 0/0:110,1:111:99:0,279,3894 0/0:72,0:72:99:0,208,2603 0/0:53,0:53:99:0,147,1744 0/0:53,0:53:99:0,147,1711 0/0:36,0:36:99:0,99,1119 0/0:56,0:56:99:0,168,1970 0/0:49,0:49:99:0,138,1608 0/1:48,48:97:99:1382,0,1158 0/0:61,0:61:99:0,165,1998 0/0:44,0:44:99:0,129,1500 0/0:48,0:48:99:0,132,1516 0/0:53,0:53:99:0,153,1808 0/0:68,0:68:99:0,186,2122 0/1:27,27:54:99:806,0,724 0/0:56,0:56:99:0,159,1856 0/1:23,22:45:99:623,0,675 0/1:25,26:51:99:742,0,704 0/0:47,0:47:99:0,126,1462 16 2821573 . C T 45895.23 . AC=45;AF=0.536;AN=84;BaseQRankSum=-19.243;DP=2601;Dels=0.00;FS=15.699;HRun=1;HaplotypeScore=1.6549;InbreedingCoeff=-0.0051;MQ=59.42;MQ0=0;MQRankSum=0.660;QD=21.68;ReadPosRankSum=-0.903 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1549,132,0 0/1:28,23:51:99:581,0,884 0/1:24,19:43:99:527,0,692 1/1:2,135:138:99:4605,351,0 1/1:0,114:114:99:3901,322,0 1/1:1,105:106:99:3541,286,0 0/1:60,42:102:99:1177,0,1803 0/1:45,57:102:99:1670,0,1419 0/1:19,26:45:99:689,0,544 0/0:33,0:33:87.28:0,87,1110 1/1:0,39:39:99:1240,99,0 0/0:45,0:45:99:0,129,1601 0/1:20,18:38:99:534,0,538 0/0:48,0:48:99:0,138,1749 1/1:0,152:152:99:4813,397,0 1/1:0,39:39:99:1339,114,0 1/1:0,51:51:99:1706,141,0 0/1:27,20:47:99:538,0,738 0/1:31,30:61:99:820,0,840 0/0:59,0:59:99:0,153,1965 0/1:32,27:59:99:781,0,918 1/1:0,45:45:99:1477,123,0 0/1:66,64:130:99:1742,0,1948 0/1:35,42:77:99:1247,0,993 0/1:54,44:98:99:1332,0,1403 0/0:81,0:81:99:0,229,3001 0/1:21,15:36:99:385,0,629 0/1:23,29:52:99:850,0,675 0/1:24,15:39:99:388,0,730 0/0:38,0:38:99:0,102,1291 0/1:22,15:37:99:434,0,580 0/0:88,0:88:99:0,226,2902 0/1:24,23:47:99:616,0,733 0/1:20,18:38:99:510,0,551 0/0:37,0:37:99:0,105,1285 1/1:0,40:40:99:1253,102,0 1/1:0,55:55:99:1874,153,0 0/1:21,27:48:99:758,0,606 1/1:0,49:49:99:1682,141,0 0/0:54,1:55:99:0,110,1776 0/1:23,26:49:99:777,0,676 0/1:24,20:44:99:556,0,746 16 2821589 . G T 402.01 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.991;DP=2560;Dels=0.00;FS=3.225;HRun=1;HaplotypeScore=1.9635;InbreedingCoeff=-0.0120;MQ=59.23;MQ0=0;MQRankSum=0.286;QD=7.88;ReadPosRankSum=-0.441 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,102,1283 0/0:50,0:50:99:0,135,1712 0/0:39,0:39:99:0,105,1322 0/0:144,0:144:99:0,370,4966 0/0:119,0:119:99:0,334,4424 0/0:90,0:90:99:0,253,3306 0/0:103,0:103:99:0,277,3690 0/0:118,0:118:99:0,319,4244 0/0:52,0:52:99:0,132,1697 0/0:28,0:28:84.27:0,84,1074 0/0:33,0:33:96.31:0,96,1219 0/0:40,0:40:99:0,108,1375 0/0:35,0:35:99:0,105,1300 0/0:54,0:54:99:0,153,1967 0/0:130,0:130:99:0,349,4371 0/0:41,0:41:99:0,111,1395 0/0:44,0:44:99:0,117,1521 0/0:46,0:46:99:0,126,1623 0/0:52,0:52:99:0,150,1874 0/0:53,0:53:99:0,141,1818 0/0:56,1:57:99:0,153,1916 0/0:42,1:43:99:0,120,1505 0/0:128,1:129:99:0,295,4346 0/0:79,0:79:99:0,208,2778 0/0:112,0:112:99:0,295,3955 0/0:87,0:87:99:0,241,3159 0/0:31,0:31:81.26:0,81,1023 0/0:49,0:49:99:0,138,1740 0/0:41,0:41:99:0,114,1441 0/0:37,0:37:99:0,99,1256 0/0:38,0:38:99:0,105,1333 0/0:82,0:82:99:0,211,2676 0/0:45,0:45:99:0,117,1468 0/0:40,0:40:99:0,105,1336 0/0:33,0:33:90.26:0,90,1123 0/0:45,0:45:99:0,129,1617 0/0:56,0:56:99:0,156,1926 0/1:33,18:51:99:448,0,975 0/0:52,0:52:99:0,150,1860 0/0:56,0:56:99:0,147,1899 0/0:45,0:45:99:0,123,1560 0/0:42,0:42:99:0,120,1520 16 2983766 . C T 104.40 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.273;DP=861;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7194;InbreedingCoeff=-0.0247;MQ=46.47;MQ0=77;MQRankSum=0.040;QD=3.60;ReadPosRankSum=-0.885 GT:AD:DP:GQ:PL 0/0:19,0:19:36.07:0,36,381 0/0:11,0:11:33.07:0,33,352 0/0:13,0:13:33.07:0,33,363 0/0:39,0:39:90.24:0,90,1091 0/0:34,0:34:66.20:0,66,827 0/0:15,0:15:33.10:0,33,410 0/0:20,0:20:42.08:0,42,481 0/0:9,0:9:21.06:0,21,254 0/0:11,0:11:30.08:0,30,331 0/0:11,0:11:24.07:0,24,286 0/0:11,0:11:27.06:0,27,284 0/0:19,0:19:48.12:0,48,537 0/0:19,0:19:48.11:0,48,532 0/0:13,0:13:36.06:0,36,366 0/0:67,0:67:99:0,135,1505 0/0:30,0:30:66.17:0,66,761 0/0:17,0:17:36.10:0,36,419 0/0:21,0:21:51.13:0,51,584 0/0:30,0:30:63.11:0,63,679 0/0:30,0:30:69.18:0,69,767 0/0:29,0:29:66.08:0,66,675 0/0:24,0:24:57.14:0,57,634 0/0:25,0:25:60.14:0,60,688 0/0:20,0:20:54.15:0,54,634 0/0:13,0:13:30.07:0,30,347 0/0:14,0:14:30.09:0,30,384 0/0:12,0:13:30.07:0,30,326 0/0:17,0:17:36.11:0,36,445 0/0:10,0:10:24.06:0,24,277 0/0:18,0:18:48.11:0,48,525 0/0:16,0:16:39.07:0,39,431 0/0:37,0:37:96.24:0,96,1087 0/0:20,0:20:54.10:0,54,581 0/0:14,0:14:33.06:0,33,334 0/0:13,0:13:30.05:0,30,319 0/0:20,0:20:54.12:0,54,612 0/0:32,1:33:33.68:0,34,720 0/0:19,0:19:54.13:0,54,585 0/0:24,0:24:54.11:0,54,587 0/1:6,2:8:57.57:58,0,71 0/1:15,5:21:99:109,0,298 0/0:14,0:14:27.07:0,27,321 16 2983910 . C T 141.04 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.759;DP=384;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4612;InbreedingCoeff=-0.0294;MQ=54.38;MQ0=0;MQRankSum=-0.331;QD=10.85;ReadPosRankSum=0.572 GT:AD:DP:GQ:PL 0/0:9,0:9:24.06:0,24,282 0/0:8,0:8:24.05:0,24,252 0/0:4,0:4:12.03:0,12,130 0/0:20,0:20:54.14:0,54,626 0/0:9,0:9:27.07:0,27,314 0/0:5,0:5:12.04:0,12,146 0/0:2,0:2:6.02:0,6,68 0/0:4,0:4:9.03:0,9,120 0/0:11,0:11:27.08:0,27,323 0/0:9,0:9:21.05:0,21,224 0/0:7,0:7:21.06:0,21,235 0/0:3,0:3:9.02:0,9,97 0/0:5,0:5:15.04:0,15,160 0/0:4,0:4:9.01:0,9,102 0/0:21,0:21:48.11:0,48,554 0/0:17,0:17:48.13:0,48,545 0/0:6,0:6:18.05:0,18,199 0/1:7,6:13:99:187,0,126 0/0:14,0:14:36.10:0,36,422 0/0:18,0:18:39.11:0,39,484 0/0:7,0:7:18.05:0,18,204 0/0:4,0:4:12.03:0,12,138 0/0:10,0:10:30.09:0,30,361 0/0:9,0:9:21.06:0,21,263 0/0:1,0:1:3.01:0,3,40 0/0:6,0:6:18.05:0,18,210 0/0:4,0:4:9.02:0,9,97 0/0:15,0:15:42.11:0,42,470 0/0:8,0:8:21.05:0,21,230 0/0:5,0:5:15.04:0,15,158 0/0:10,0:10:21.06:0,21,234 0/0:15,0:15:39.09:0,39,435 0/0:10,0:10:27.07:0,27,306 0/0:5,0:5:15.03:0,15,161 0/0:7,0:7:18.04:0,18,194 0/0:12,0:12:33.09:0,33,372 0/0:11,0:11:30.07:0,30,323 0/0:5,0:6:15.04:0,15,167 0/0:23,0:23:60.17:0,60,703 0/0:9,0:9:27.07:0,27,305 0/0:10,0:10:27.07:0,27,299 0/0:8,0:8:24.06:0,24,280 16 2987279 . G T 427.99 . AC=5;AF=0.060;AN=84;BaseQRankSum=-3.712;DP=423;Dels=0.00;FS=3.234;HRun=0;HaplotypeScore=0.3863;InbreedingCoeff=-0.0766;MQ=51.99;MQ0=0;MQRankSum=0.932;QD=9.30;ReadPosRankSum=0.146 GT:AD:DP:GQ:PL 0/0:12,0:12:30.08:0,30,351 0/0:9,0:9:27.04:0,27,302 0/0:7,0:7:21.04:0,21,249 0/0:17,0:17:51.16:0,51,650 0/0:29,0:29:78.25:0,78,1024 0/0:7,0:7:21.07:0,21,270 0/0:13,0:13:30.09:0,30,369 0/0:10,0:10:27.07:0,27,345 0/0:5,0:5:15.04:0,15,177 0/0:7,0:7:21.05:0,21,240 0/0:9,0:9:21.07:0,21,258 0/1:6,3:9:49.03:49,0,201 0/1:3,2:5:53.60:54,0,75 0/0:8,0:8:21.07:0,21,265 0/0:20,0:20:51.13:0,51,593 0/0:15,0:15:42.13:0,42,529 0/0:6,0:6:18.05:0,18,209 0/0:4,0:4:12.03:0,12,135 0/0:10,0:10:30.06:0,30,325 0/0:23,0:23:63.19:0,63,770 0/0:12,0:12:30.09:0,30,366 0/0:13,0:13:36.10:0,36,429 0/0:17,0:17:48.14:0,48,622 0/0:12,0:12:36.11:0,36,468 0/0:10,0:10:30.10:0,30,392 0/0:10,0:10:30.06:0,30,342 0/0:9,0:9:18.06:0,18,230 0/0:5,0:5:15.05:0,15,189 0/0:4,0:4:12.03:0,12,139 0/0:8,0:8:21.05:0,21,245 0/0:3,0:3:6.01:0,6,64 0/0:21,0:21:51.16:0,51,660 0/0:9,0:9:27.05:0,27,305 0/0:5,0:5:15.05:0,15,184 0/0:4,0:4:9.02:0,9,103 0/0:2,0:2:3.01:0,3,39 0/0:5,0:5:15.04:0,15,176 0/1:5,3:8:77.99:78,0,151 0/0:9,0:9:27.08:0,27,328 0/1:8,7:15:99:201,0,252 0/1:4,5:9:99:142,0,109 0/0:8,0:8:24.08:0,24,310 16 2987315 . G A 328.48 . AC=4;AF=0.048;AN=84;BaseQRankSum=1.446;DP=387;Dels=0.00;FS=2.364;HRun=0;HaplotypeScore=0.3759;InbreedingCoeff=0.2524;MQ=55.58;MQ0=0;MQRankSum=-0.636;QD=10.95;ReadPosRankSum=-1.311 GT:AD:DP:GQ:PL 0/0:9,0:9:27.07:0,27,307 0/0:12,0:12:36.09:0,36,399 0/1:7,4:11:99:117,0,167 0/0:19,0:19:54.14:0,54,625 0/0:23,0:23:63.13:0,63,702 0/0:7,0:7:21.06:0,21,243 0/0:10,1:11:30.02:0,30,319 0/1:5,4:9:87.82:88,0,112 0/0:5,0:5:15.03:0,15,149 0/0:4,0:4:12.03:0,12,138 0/1:0,4:4:0.26:140,12,0 0/0:6,0:6:12.03:0,12,128 0/0:3,0:3:9.02:0,9,99 0/0:8,0:8:21.06:0,21,247 0/0:19,0:19:57.11:0,57,613 0/0:8,0:8:21.06:0,21,241 0/0:4,0:4:12.03:0,12,139 0/1:3,3:6:76.47:81,0,76 0/0:16,0:16:45.12:0,45,515 0/0:16,0:16:42.12:0,42,507 0/0:17,0:18:48.13:0,48,545 0/0:9,0:9:21.05:0,21,248 0/0:17,0:17:48.08:0,48,553 0/0:9,0:9:27.07:0,27,313 0/0:8,0:8:24.02:0,24,255 0/0:12,0:12:30.06:0,30,316 0/0:4,0:4:9.03:0,9,109 0/0:7,0:7:21.03:0,21,211 0/0:6,0:6:15.05:0,15,193 0/0:4,0:4:12.04:0,12,146 0/0:6,0:6:15.04:0,15,167 0/0:17,0:17:48.08:0,48,536 0/0:8,0:8:24.05:0,24,264 0/0:6,0:6:18.05:0,18,197 0/0:3,0:3:6.01:0,6,63 0/0:3,0:3:3:0,3,25 0/0:8,0:8:24.05:0,24,251 0/0:7,0:7:21.06:0,21,240 0/0:6,0:6:18.05:0,18,216 0/0:11,0:11:27.06:0,27,295 0/0:8,0:8:18.04:0,18,201 0/0:10,0:10:27.07:0,27,318 16 2988368 . G C 24.65 . AC=1;AF=0.012;AN=84;BaseQRankSum=-7.738;DP=813;Dels=0.00;FS=115.512;HRun=1;HaplotypeScore=0.7862;InbreedingCoeff=-0.0513;MQ=58.56;MQ0=0;MQRankSum=1.242;QD=2.24;ReadPosRankSum=-6.687 GT:AD:DP:GQ:PL 0/0:12,1:13:27.04:0,27,283 0/0:7,1:8:18.05:0,18,204 0/0:14,4:18:36.07:0,36,380 0/0:37,2:39:99:0,99,1137 0/0:38,2:40:71.70:0,72,1126 0/0:30,1:31:78.21:0,78,900 0/0:20,1:21:54.15:0,54,626 0/0:15,1:16:39.08:0,39,442 0/0:16,3:19:45.05:0,45,449 0/0:7,0:7:15.03:0,15,157 0/0:16,3:19:36.09:0,36,389 0/0:12,1:13:36.06:0,36,370 0/0:6,0:6:18.05:0,18,194 0/0:18,3:21:45.10:0,45,478 0/0:59,4:63:99:0,150,1587 0/0:12,6:18:27.06:0,27,294 0/0:14,0:14:39.08:0,39,409 0/0:15,4:19:6.38:0,6,295 0/0:17,2:19:18.51:0,19,471 0/0:26,2:28:72.16:0,72,769 0/0:23,1:24:66.16:0,66,721 0/0:19,2:21:19.44:0,19,435 0/0:24,6:30:59.85:0,60,682 0/0:19,1:20:33.48:0,33,650 0/0:25,1:26:62.94:0,63,684 0/0:15,1:16:39.12:0,39,466 0/0:12,1:13:6.40:0,6,305 0/0:11,2:13:33.08:0,33,365 0/0:11,2:13:2.48:0,2,288 0/0:9,2:11:27.07:0,27,297 0/0:11,0:11:33.08:0,33,355 0/0:28,1:29:69.14:0,69,734 0/0:21,4:25:1.37:4,0,359 0/0:14,2:16:30.07:0,30,324 0/0:13,1:14:33.09:0,33,357 0/0:13,1:14:2.33:1,0,238 0/0:25,4:29:57.11:0,57,596 0/1:7,4:11:69.31:69,0,136 0/0:12,1:13:14.40:0,14,339 0/0:9,3:12:24.03:0,24,253 0/0:7,2:9:0.46:10,0,166 0/0:8,1:9:18.03:0,18,184 16 3017854 . G C 283.68 . AC=3;AF=0.038;AN=80;BaseQRankSum=2.689;DP=139;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.2692;InbreedingCoeff=0.0302;MQ=57.27;MQ0=0;MQRankSum=-0.338;QD=17.73;ReadPosRankSum=0.896 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,37 0/0:4,0:4:12.03:0,12,135 0/0:2,0:2:6.02:0,6,74 0/1:3,3:6:93:102,0,93 0/0:9,0:9:24.07:0,24,289 0/0:3,0:3:6.02:0,6,78 0/0:3,1:4:9.03:0,9,113 0/0:3,0:3:6.01:0,6,73 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,75 0/0:5,0:5:15.05:0,15,185 ./. 0/0:2,0:2:6.02:0,6,76 0/0:3,0:3:9.02:0,9,106 0/0:7,0:7:21.04:0,21,247 0/0:4,0:4:12.01:0,12,129 0/0:3,0:3:9.03:0,9,116 0/1:0,1:1:1.76:37,3,0 0/0:5,0:5:12.04:0,12,144 0/0:2,0:2:6.02:0,6,76 0/0:1,0:2:3.01:0,3,36 0/0:4,0:4:9.03:0,9,119 0/1:3,6:9:82.48:219,0,82 0/0:4,0:4:12.03:0,12,143 0/0:6,0:6:18.06:0,18,243 0/0:2,0:2:6.01:0,6,64 0/0:1,0:1:3.01:0,3,36 0/0:3,0:3:9.03:0,9,110 ./. 0/0:2,0:2:6.02:0,6,74 0/0:4,0:4:12.04:0,12,142 0/0:6,0:6:15.02:0,15,165 0/0:7,0:7:18.06:0,18,236 0/0:3,0:3:9.03:0,9,116 0/0:3,0:3:9.03:0,9,105 0/0:1,0:1:3.01:0,3,39 0/0:6,0:6:15.04:0,15,178 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,75 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,76 0/0:3,0:3:9.03:0,9,119 16 3019781 . T TC 1461.94 . AC=37;AF=0.474;AN=78;BaseQRankSum=2.314;DP=398;FS=45.755;HRun=1;HaplotypeScore=69.1678;InbreedingCoeff=-0.6165;MQ=49.67;MQ0=1;MQRankSum=-1.010;QD=3.96;ReadPosRankSum=0.301 GT:AD:DP:GQ:PL 0/0:6,0:6:6.01:0,6,65 0/1:4,0:4:29.95:49,0,30 0/1:9,0:9:21.49:21,0,51 1/1:20,0:20:3.01:32,3,0 0/1:18,4:22:10.13:159,0,10 0/1:13,0:13:75.62:76,0,93 0/1:10,0:10:29.93:55,0,30 0/1:13,1:14:20.90:21,0,68 0/1:7,0:7:29.94:50,0,30 0/0:3,0:3:3.01:0,3,39 0/0:7,0:7:9.03:0,9,115 0/1:7,0:7:29.79:47,0,30 0/1:12,0:12:42.89:43,0,44 0/0:6,0:6:6:0,6,63 0/1:17,0:17:41.80:42,0,84 0/1:12,1:13:42.62:43,0,101 0/1:4,0:4:1.76:31,3,0 0/1:7,0:7:18.87:19,0,84 0/1:11,3:14:31.78:32,0,173 0/1:17,1:16:29.98:30,0,64 0/1:8,1:9:17.82:18,0,133 ./. 0/1:22,5:27:99:234,0,115 0/1:5,1:6:26.85:27,0,33 1/1:10,0:10:6.01:68,6,0 0/1:14,0:14:13.95:14,0,90 0/1:10,0:10:55.47:55,0,66 0/1:9,0:9:60.56:71,0,61 1/1:4,0:4:6.01:59,6,0 0/1:6,0:6:25.85:26,0,33 0/1:10,0:10:72.59:73,0,134 0/1:9,0:9:16.83:17,0,140 0/1:14,0:14:56.02:56,0,90 ./.:.:2:.:0,0,0 0/1:7,0:7:23.90:24,0,33 0/1:5,0:5:4.96:5,0,96 0/1:8,1:9:10.15:10,0,125 0/0:7,0:7:9.02:0,9,108 0/1:7,0:7:29.17:47,0,29 ./.:.:3:.:0,0,0 0/1:9,0:9:29.18:52,0,29 0/1:8,0:8:23.45:28,0,23 16 3019782 . CGGGCTG C 858.72 . AC=28;AF=0.359;AN=78;BaseQRankSum=-3.115;DP=267;FS=39.722;HRun=0;HaplotypeScore=36.3726;InbreedingCoeff=-0.3966;MQ=57.32;MQ0=1;MQRankSum=3.046;QD=4.32;ReadPosRankSum=-2.269 GT:AD:DP:GQ:PL 0/0:6,0:6:9.03:0,9,275 0/1:6,0:6:42.81:43,0,216 0/1:6,0:6:45.32:45,0,241 0/0:4,0:4:3:0,3,30 0/1:12,0:12:95.89:104,0,96 0/0:4,0:4:9.03:0,9,276 0/1:9,0:9:15.90:16,0,248 0/1:9,0:9:14.87:15,0,327 0/1:5,0:5:49.83:50,0,88 0/0:1,0:1:3.01:0,3,107 0/0:5,0:5:12.04:0,12,370 0/1:5,0:5:15.94:16,0,179 0/1:8,0:8:11.91:12,0,326 0/0:5,0:5:12.04:0,12,351 0/1:5,4:9:38.67:39,0,427 0/1:12,0:12:9.88:10,0,439 ./. 0/0:5,0:5:12.04:0,12,358 0/1:13,0:13:49.52:50,0,813 0/0:14,0:12:9.03:0,9,240 0/1:7,0:7:14.78:15,0,483 ./. 0/1:15,0:15:99:131,0,380 0/1:5,0:5:23.81:24,0,165 1/1:2,4:6:6.01:68,6,0 0/1:8,0:8:13.93:14,0,305 0/1:7,0:7:15.85:16,0,345 0/1:5,0:5:45.67:46,0,189 1/1:3,0:3:6.01:59,6,0 0/0:3,0:3:3.01:0,3,113 0/1:9,0:9:72.59:73,0,391 0/1:8,0:8:13.81:14,0,479 0/1:13,0:13:31.85:32,0,415 ./.:.:2:.:0,0,0 0/1:4,0:4:20.89:21,0,152 0/0:5,0:5:15:0,15,402 0/0:9,0:9:24.08:0,24,717 0/0:5,0:5:12.04:0,12,404 0/1:2,4:6:76.04:76,0,95 0/1:1,0:1:1.76:0,3,12 0/1:6,0:6:45.77:46,0,206 0/0:2,0:2:3.01:0,3,103 16 3019783 . G C 394.70 . AC=18;AF=0.250;AN=72;BaseQRankSum=1.647;DP=267;Dels=0.04;FS=21.401;HRun=1;HaplotypeScore=1.6616;InbreedingCoeff=-0.2590;MQ=57.32;MQ0=1;MQRankSum=0.881;QD=3.29;ReadPosRankSum=-3.876 GT:AD:DP:GQ:PL 0/0:3,3:6:9.02:0,9,94 0/1:3,3:6:51.77:52,0,78 0/1:2,4:6:27.95:28,0,67 ./. 0/0:3,9:12:3.01:0,3,34 0/0:3,1:4:9.02:0,9,96 0/1:4,4:9:23.22:23,0,81 0/0:7,2:9:12.03:0,12,140 0/1:1,4:5:22.53:59,0,23 0/0:1,0:1:3.01:0,3,32 0/0:4,1:5:12.02:0,12,122 0/1:2,3:5:20.60:21,0,58 0/1:4,4:8:16.52:17,0,110 0/0:4,1:5:12.02:0,12,120 0/0:5,0:5:12.02:0,12,118 0/1:6,6:12:14.48:14,0,129 ./. 0/0:4,1:5:12.03:0,12,126 0/0:10,3:13:27.96:0,28,315 0/0:8,6:14:6.02:0,6,70 0/0:5,2:7:15.04:0,15,160 ./. 0/0:5,10:15:9.03:0,9,109 0/0:2,3:5:6:0,6,58 ./. 0/1:3,5:8:21.57:22,0,60 0/1:4,3:7:23.22:23,0,87 0/1:2,3:5:24.58:26,0,25 1/1:0,3:3:6.02:68,6,0 0/0:2,1:3:3:0,3,29 0/1:5,4:9:72.88:73,0,102 0/1:6,2:8:18.08:18,0,147 0/1:6,7:13:44.04:44,0,113 ./. 0/1:2,2:4:24.41:24,0,57 0/0:5,0:5:12.03:0,12,129 0/0:8,1:9:24.03:0,24,243 0/0:4,1:5:12.03:0,12,132 0/1:1,1:2:1.76:0,3,28 ./. 0/1:4,2:6:26.76:27,0,53 0/0:1,1:2:3.01:0,3,30 16 3019794 . G C 93.57 . AC=14;AF=0.167;AN=84;BaseQRankSum=-7.325;DP=499;Dels=0.00;FS=133.118;HRun=1;HaplotypeScore=0.2777;InbreedingCoeff=-0.2472;MQ=57.08;MQ0=0;MQRankSum=2.029;QD=0.52;ReadPosRankSum=-7.311 GT:AD:DP:GQ:PL 0/0:7,3:10:15.04:0,15,162 0/0:5,2:7:12.03:0,12,128 0/0:3,0:3:3.01:0,3,38 0/0:11,4:15:1.28:5,0,148 0/0:17,10:27:3.39:0,3,268 0/1:6,5:11:10.66:11,0,116 0/0:16,5:21:27.06:0,27,295 0/0:8,2:10:21.06:0,21,238 0/0:6,2:8:15.04:0,15,160 0/1:4,3:7:12.67:13,0,85 0/1:6,5:11:12.55:13,0,140 0/0:7,2:9:15.02:0,15,155 0/0:12,1:13:24.01:0,24,234 0/0:6,0:6:18.04:0,18,190 0/1:19,14:33:57.41:57,0,412 0/0:9,6:15:24.06:0,24,253 0/1:5,3:8:16.51:17,0,112 0/0:6,1:7:18.04:0,18,191 0/1:12,4:16:16.04:16,0,303 0/1:13,4:17:8.64:9,0,140 0/1:8,3:11:9.37:9,0,205 0/0:5,0:5:12.01:0,12,120 0/0:25,8:33:45.10:0,45,489 0/0:9,2:11:24.05:0,24,258 0/1:10,2:12:16.31:16,0,146 0/1:13,3:16:9.54:10,0,176 0/0:8,4:12:17.27:0,17,174 0/0:5,3:8:6.02:0,6,77 0/0:5,3:8:3.01:0,3,31 0/0:4,0:4:12.01:0,12,114 0/0:9,2:11:21.05:0,21,227 0/1:9,1:10:12.38:12,0,174 0/0:11,1:12:18.05:0,18,196 0/0:2,4:6:3:0,3,29 0/1:6,2:8:17.46:17,0,115 0/0:8,1:9:21.05:0,21,215 0/0:17,5:22:14.52:0,15,401 0/0:8,4:12:2.26:2,0,171 0/0:5,3:8:9.02:0,9,93 0/1:4,3:7:19.63:20,0,54 0/1:9,4:13:10.51:11,0,163 0/0:6,1:7:15.03:0,15,152 16 3070404 . T TC 721.97 . AC=27;AF=0.321;AN=84;BaseQRankSum=3.317;DP=344;FS=263.679;HRun=1;HaplotypeScore=45.1779;InbreedingCoeff=-0.3673;MQ=47.92;MQ0=0;MQRankSum=-2.926;QD=2.97;ReadPosRankSum=-5.410 GT:AD:DP:GQ:PL 0/0:4,0:4:6.02:0,6,78 0/1:5,0:5:26.92:27,0,66 1/1:2,0:2:2.98:22,3,0 0/1:30,0:30:62.60:63,0,297 0/1:16,0:16:61.81:62,0,132 0/1:14,1:15:55.75:56,0,89 0/1:10,0:10:2.93:3,0,177 0/1:10,0:10:24.05:86,0,24 0/0:12,1:13:14.07:0,14,162 0/0:8,0:9:6.02:0,6,76 0/0:5,0:5:3.01:0,3,39 0/1:6,0:6:26.90:27,0,48 0/0:4,0:4:3.01:0,3,39 0/0:3,0:3:5:0,5,53 0/1:21,0:22:99:138,0,188 0/1:2,0:2:0.99:1,0,34 0/0:6,0:6:6.02:0,6,78 0/0:4,0:4:9.03:0,9,107 0/0:10,0:10:4.08:0,4,141 0/1:8,0:8:13.96:14,0,142 0/1:9,0:9:32.84:33,0,64 0/1:10,0:10:13.05:13,0,172 0/1:20,0:21:83.71:106,0,84 0/1:10,1:11:5.20:5,0,113 0/0:6,1:7:3.01:0,3,39 0/1:10,0:10:17.90:18,0,69 0/0:4,0:4:3:0,3,25 0/0:4,0:4:7.27:0,7,81 0/0:5,0:5:8.99:0,9,98 0/1:8,0:8:4.96:5,0,69 0/1:5,0:5:12.94:13,0,69 0/0:9,0:9:4.96:0,5,138 0/1:11,0:11:1.49:1,0,78 0/0:2,0:2:0.91:0,1,36 0/1:7,0:7:18.92:19,0,120 0/1:6,1:7:24.15:91,0,24 0/1:6,0:6:18.87:19,0,105 0/0:6,0:6:2.02:0,2,70 1/1:1,1:2:3.01:33,3,0 0/1:5,0:5:22.93:23,0,33 0/1:4,1:5:7.97:8,0,33 0/0:6,0:6:10.85:0,11,121 16 3070406 . G C 257.02 . AC=14;AF=0.171;AN=82;BaseQRankSum=-6.032;DP=283;Dels=0.00;FS=134.640;HRun=1;HaplotypeScore=0.3904;InbreedingCoeff=-0.1787;MQ=51.40;MQ0=0;MQRankSum=0.368;QD=2.16;ReadPosRankSum=-1.210 GT:AD:DP:GQ:PL 0/0:3,1:4:6.02:0,6,72 0/0:2,1:3:6.02:0,6,69 1/1:0,2:2:3:27,3,0 0/0:13,9:22:3.47:0,3,332 0/1:7,6:13:37.10:37,0,210 0/1:7,5:12:21.93:22,0,138 0/0:6,3:9:15.05:0,15,191 0/1:4,7:11:81.98:92,0,82 0/0:9,2:11:15.04:0,15,171 0/0:4,3:7:6.02:0,6,74 0/1:1,4:5:1.76:0,3,33 0/0:2,2:4:6.01:0,6,63 0/0:3,0:3:6.01:0,6,66 0/0:2,1:3:3.01:0,3,39 0/1:13,4:17:11.18:11,0,191 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:6.02:0,6,76 0/0:3,0:3:9.03:0,9,108 0/0:4,1:5:12.04:0,12,142 0/1:7,1:8:21.40:21,0,93 0/1:4,2:6:36.27:36,0,86 0/0:7,2:9:15.05:0,15,192 0/1:10,7:17:52.90:53,0,220 0/1:6,4:10:12.67:13,0,94 0/0:1,4:5:3.01:0,3,41 0/1:3,5:8:22.52:23,0,66 0/0:2,2:4:6.01:0,6,62 0/0:3,1:4:6.02:0,6,72 0/0:3,1:4:9.01:0,9,93 0/0:7,2:9:12.04:0,12,146 0/0:3,1:4:6.02:0,6,75 0/0:5,3:8:15.02:0,15,163 0/0:6,4:10:8.99:0,9,88 0/0:1,1:2:3.01:0,3,33 0/0:4,2:6:12.02:0,12,139 0/1:2,3:5:27.42:28,0,27 0/0:5,0:5:9.03:0,9,110 0/0:2,3:5:6.01:0,6,64 ./. 0/1:2,3:5:27.42:27,0,33 0/0:2,2:4:3.01:0,3,33 0/0:4,1:5:9.03:0,9,109 16 3081048 . C T 121.86 . AC=1;AF=0.013;AN=80;BaseQRankSum=2.076;DP=169;Dels=0.00;FS=11.138;HRun=0;HaplotypeScore=0.1064;InbreedingCoeff=-0.0784;MQ=58.69;MQ0=0;MQRankSum=-0.450;QD=15.23;ReadPosRankSum=1.253 GT:AD:DP:GQ:PL 0/0:4,0:4:12.04:0,12,141 0/0:3,0:3:9.03:0,9,104 0/0:5,0:5:15.02:0,15,151 0/0:3,0:3:9.02:0,9,92 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:6.02:0,6,76 0/0:2,0:2:3.01:0,3,45 0/0:8,0:8:21.06:0,21,254 0/0:7,0:7:12.03:0,12,140 0/0:1,0:1:3:0,3,29 0/0:1,0:1:2.99:0,3,23 0/0:4,0:4:12.04:0,12,144 0/0:2,0:2:6.02:0,6,75 0/0:9,0:9:24.06:0,24,273 0/0:4,0:4:12.03:0,12,140 0/1:3,5:8:55.25:167,0,55 ./. 0/0:5,0:5:12.03:0,12,139 0/0:7,0:7:18.04:0,18,200 0/0:8,0:8:24.07:0,24,265 0/0:5,0:5:15.02:0,15,151 0/0:3,0:3:9.02:0,9,97 0/0:4,0:4:12.03:0,12,137 0/0:1,0:1:3.01:0,3,34 0/0:1,0:1:3.01:0,3,36 0/0:2,0:3:6.01:0,6,67 0/0:3,0:3:9.02:0,9,101 0/0:4,0:4:9.03:0,9,116 0/0:4,0:4:12.03:0,12,135 0/0:1,0:1:3.01:0,3,39 0/0:10,0:10:21.04:0,21,243 0/0:3,0:3:9.03:0,9,104 0/0:3,0:3:9.02:0,9,97 0/0:7,0:7:12.03:0,12,132 0/0:3,0:3:9.02:0,9,92 0/0:7,0:7:21.05:0,21,229 0/0:9,0:9:24.07:0,24,294 0/0:5,0:5:15.04:0,15,174 0/0:4,0:4:9.03:0,9,119 0/0:4,0:4:12.03:0,12,137 ./. 16 3100095 . C T 20014.19 . AC=29;AF=0.345;AN=84;BaseQRankSum=-18.896;DP=2590;Dels=0.00;FS=2.408;HRun=0;HaplotypeScore=2.3723;InbreedingCoeff=-0.0006;MQ=58.94;MQ0=0;MQRankSum=-1.395;QD=15.55;ReadPosRankSum=0.858 GT:AD:DP:GQ:PL 0/1:21,11:32:99:272,0,556 0/0:32,0:33:84.22:0,84,1005 0/1:26,9:36:99:182,0,722 0/0:162,1:163:99:0,466,5909 0/1:69,52:121:99:1396,0,2240 0/1:46,41:87:99:1116,0,1518 1/1:0,52:53:99:1670,150,0 0/1:35,45:81:99:1277,0,977 0/1:26,24:50:99:699,0,748 0/1:23,19:42:99:343,0,684 0/1:30,12:42:99:299,0,921 0/0:43,0:43:99:0,111,1356 0/0:29,0:29:75.22:0,75,927 0/0:60,0:60:99:0,168,2029 0/0:149,0:149:99:0,397,4859 0/0:57,0:57:99:0,159,1902 0/1:24,20:44:99:567,0,682 0/0:22,0:22:63.17:0,63,754 0/1:41,35:76:99:868,0,1146 0/1:48,50:98:99:1302,0,1400 0/1:34,35:69:99:1036,0,824 0/1:28,19:48:99:502,0,907 0/0:154,0:154:99:0,427,5445 0/0:77,0:77:99:0,220,2832 0/0:92,0:92:99:0,256,3283 0/0:76,0:76:99:0,208,2658 0/0:38,0:38:96.27:0,96,1145 0/1:15,17:32:99:474,0,391 0/0:51,1:52:99:0,113,1789 0/1:18,21:39:99:562,0,474 0/0:57,0:58:99:0,162,1994 0/0:93,0:93:99:0,244,3012 1/1:0,54:54:99:1738,150,0 1/1:1,27:28:38.76:771,39,0 0/1:19,22:41:99:523,0,556 1/1:0,39:39:99:1267,114,0 0/0:58,0:58:99:0,162,1922 0/1:19,16:37:99:371,0,556 0/0:49,0:49:99:0,141,1685 1/1:0,48:48:99:1541,132,0 0/1:16,28:44:99:817,0,466 0/1:30,16:46:99:421,0,930 16 3109032 . G A 258.07 . AC=9;AF=0.113;AN=80;BaseQRankSum=-2.016;DP=178;Dels=0.00;FS=1.142;HRun=1;HaplotypeScore=0.2359;InbreedingCoeff=0.1300;MQ=58.23;MQ0=0;MQRankSum=1.361;QD=10.32;ReadPosRankSum=-0.041 GT:AD:DP:GQ:PL 0/0:6,0:6:9.02:0,9,108 0/0:4,0:4:6.02:0,6,90 0/0:1,0:1:3.01:0,3,38 0/0:5,0:5:12.04:0,12,167 0/0:3,0:3:9.03:0,9,120 0/1:0,1:1:1.76:34,3,0 0/0:2,0:2:6.02:0,6,72 1/1:0,2:3:3.01:45,3,0 0/1:1,2:3:15.67:28,0,16 0/0:6,0:6:12.04:0,12,164 0/1:3,4:7:46.93:123,0,47 0/0:2,0:2:6.02:0,6,78 0/0:5,0:5:12.03:0,12,149 0/0:3,0:3:9.03:0,9,106 0/0:24,0:25:54.17:0,54,692 0/0:6,0:6:18.06:0,18,229 0/0:4,0:4:9.03:0,9,123 0/0:2,0:2:6.02:0,6,79 0/0:6,0:6:12.04:0,12,159 0/0:2,0:2:6.02:0,6,78 0/0:2,0:2:6.02:0,6,74 0/1:3,1:4:23.22:23,0,97 0/0:3,0:3:9.01:0,9,105 0/0:1,0:1:3.01:0,3,34 ./. 0/0:1,0:1:3.01:0,3,42 ./. 0/0:4,0:4:6.02:0,6,89 0/0:6,0:6:12.04:0,12,162 0/0:4,0:4:12.04:0,12,148 0/0:1,0:1:3.01:0,3,40 0/0:6,0:6:12.04:0,12,159 0/1:1,1:3:27.42:31,0,27 0/0:6,0:6:15.05:0,15,192 0/0:8,0:8:15.05:0,15,198 0/0:10,0:10:21.07:0,21,279 0/0:6,0:6:15.03:0,15,172 0/0:2,0:2:3.01:0,3,38 0/0:5,0:5:15.05:0,15,181 0/1:0,1:1:1.76:32,3,0 0/0:6,0:6:12.04:0,12,164 0/1:1,2:3:22.52:62,0,23 16 3118239 . C T 51.60 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.717;DP=421;Dels=0.00;FS=2.441;HRun=0;HaplotypeScore=0.2838;InbreedingCoeff=-0.0429;MQ=58.80;MQ0=0;MQRankSum=1.701;QD=3.44;ReadPosRankSum=-2.612 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,194 0/0:10,0:10:30.10:0,30,377 0/0:7,0:7:21.07:0,21,267 0/0:20,0:20:60.19:0,60,800 0/0:16,0:16:48.16:0,48,668 0/0:7,1:8:0.16:14,0,233 0/1:4,4:8:90.57:91,0,147 0/0:17,0:17:51.17:0,51,693 0/0:4,0:4:12.04:0,12,155 0/0:8,0:8:24.08:0,24,304 0/0:9,0:9:24.08:0,24,311 0/0:10,0:10:30.10:0,30,383 0/0:8,0:8:24.07:0,24,298 0/0:7,0:7:21.07:0,21,273 0/0:26,0:26:78.24:0,78,984 0/0:4,0:4:12.04:0,12,147 0/0:10,0:10:30.09:0,30,370 0/0:8,0:8:24.08:0,24,308 0/0:17,0:17:45.12:0,45,544 0/0:13,0:13:36.10:0,36,440 0/0:19,0:19:57.18:0,57,738 0/0:10,0:10:27.08:0,27,339 0/0:14,0:14:42.13:0,42,565 0/0:2,0:2:6.02:0,6,82 0/0:12,0:12:36.12:0,36,499 0/0:8,0:8:24.08:0,24,332 0/0:9,0:9:27.08:0,27,333 0/0:4,0:4:12.04:0,12,154 0/0:9,0:9:27.09:0,27,344 0/0:9,0:9:27.08:0,27,338 0/0:7,0:7:18.05:0,18,226 0/0:7,0:7:21.07:0,21,268 0/0:15,0:15:39.13:0,39,508 0/0:9,0:9:27.09:0,27,341 0/0:12,0:12:36.11:0,36,448 0/0:12,0:12:36.12:0,36,459 0/0:12,0:12:30.10:0,30,388 0/0:6,0:6:18.05:0,18,222 0/0:8,0:8:24.08:0,24,308 0/0:7,0:7:21.07:0,21,260 0/0:8,0:8:24.08:0,24,305 0/1:5,2:7:18.07:18,0,178 16 3118240 . A G 16.22 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.063;DP=423;Dels=0.00;FS=4.993;HRun=1;HaplotypeScore=0.2838;InbreedingCoeff=-0.0188;MQ=58.81;MQ0=0;MQRankSum=0.043;QD=2.03;ReadPosRankSum=0.443 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,190 0/0:10,0:10:30.09:0,30,361 0/0:7,0:7:21.07:0,21,258 0/0:19,0:19:57.18:0,57,733 0/0:16,0:16:48.16:0,48,624 0/0:7,0:8:21.07:0,21,280 0/0:8,0:8:21.07:0,21,273 0/0:17,0:17:51.16:0,51,661 0/0:4,0:4:12.04:0,12,149 0/0:8,0:8:24.08:0,24,301 0/0:9,0:9:24.08:0,24,303 0/0:10,0:10:30.09:0,30,374 0/0:8,0:8:24.06:0,24,285 0/0:7,0:7:21.07:0,21,265 0/0:26,0:26:78.25:0,78,970 0/0:4,0:4:12.04:0,12,142 0/0:10,0:10:30.09:0,30,361 0/0:8,0:8:24.08:0,24,303 0/0:18,0:18:42.12:0,42,510 0/0:13,0:13:36.11:0,36,446 0/0:18,0:18:54.17:0,54,686 0/0:10,0:10:30.09:0,30,368 0/0:15,0:15:45.14:0,45,566 0/0:2,0:2:6.02:0,6,75 0/0:12,0:12:36.11:0,36,458 0/0:8,0:8:21.07:0,21,276 0/0:9,0:9:27.08:0,27,336 0/0:4,0:4:12.04:0,12,151 0/0:9,0:9:27.08:0,27,334 0/0:9,0:9:27.08:0,27,332 0/1:5,3:8:62.27:62,0,169 0/0:7,0:7:21.07:0,21,264 0/0:15,0:15:39.12:0,39,492 0/0:8,0:9:24.08:0,24,298 0/0:12,0:12:36.11:0,36,437 0/0:13,0:13:39.12:0,39,488 0/0:12,0:12:30.09:0,30,378 0/0:6,0:6:18.06:0,18,222 0/0:8,0:8:24.08:0,24,302 0/0:7,0:7:15.05:0,15,193 0/0:8,0:8:24.08:0,24,300 0/0:7,0:7:21.07:0,21,264 16 3142621 . C G 358.19 . AC=16;AF=0.190;AN=84;BaseQRankSum=-6.996;DP=457;Dels=0.00;FS=58.904;HRun=1;HaplotypeScore=0.4467;InbreedingCoeff=-0.2767;MQ=56.71;MQ0=0;MQRankSum=0.108;QD=1.70;ReadPosRankSum=-2.282 GT:AD:DP:GQ:PL 0/0:10,7:17:1.06:6,0,206 0/0:9,3:12:15.03:0,15,170 0/0:7,4:11:17.73:0,18,198 0/0:7,3:10:15.05:0,15,193 0/0:3,0:3:9.03:0,9,108 0/0:12,1:13:24.08:0,24,315 0/1:4,1:5:21.40:21,0,102 0/1:7,5:12:45.97:46,0,131 0/0:9,3:12:15:0,15,152 0/1:6,7:13:33.29:33,0,164 0/0:5,1:6:12.04:0,12,141 0/0:4,3:7:9.03:0,9,108 0/0:5,5:10:11.62:0,12,105 0/1:6,5:11:13.52:14,0,159 0/1:20,12:32:34.59:35,0,485 0/1:9,5:14:5.59:6,0,199 0/1:5,5:10:44.57:45,0,160 0/0:5,2:7:15.05:0,15,184 0/1:9,6:15:96.64:97,0,167 0/1:18,5:23:58.41:58,0,305 0/1:5,5:11:16.56:17,0,94 0/1:8,6:15:9.65:10,0,142 0/0:6,3:9:9.02:0,9,104 0/0:6,1:7:18.04:0,18,207 0/0:6,1:7:12.03:0,12,144 0/0:6,1:7:12.03:0,12,135 0/0:6,5:11:15.02:0,15,162 0/0:5,1:6:5.98:0,6,49 0/1:6,5:11:8.63:9,0,163 0/0:9,2:11:18.03:0,18,201 0/0:12,1:14:15.05:0,15,186 0/0:15,0:15:24.03:0,24,248 0/1:7,1:8:11.57:12,0,166 0/1:10,3:13:15.07:15,0,183 0/0:3,2:5:5.99:0,6,55 0/1:5,6:11:77.77:78,0,92 0/1:5,2:7:9.66:10,0,89 0/0:6,0:6:6:0,6,62 0/0:8,4:12:18.04:0,18,206 0/0:8,3:11:1.88:3,0,184 0/0:5,1:6:15.03:0,15,163 0/0:9,2:11:21.05:0,21,246 16 3142625 . T C 9.35 . AC=1;AF=0.012;AN=82;BaseQRankSum=-3.532;DP=398;Dels=0.00;FS=5.211;HRun=4;HaplotypeScore=1.3241;InbreedingCoeff=-0.0432;MQ=56.54;MQ0=0;MQRankSum=-0.525;QD=1.17;ReadPosRankSum=-0.732 GT:AD:DP:GQ:PL 0/0:12,2:14:24.07:0,24,289 0/0:7,1:8:18.06:0,18,225 0/0:10,0:10:27.07:0,27,305 0/0:6,1:7:15.05:0,15,179 0/0:4,1:5:12.04:0,12,143 0/0:10,4:14:27.08:0,27,336 0/0:5,0:5:12.04:0,12,146 0/0:10,0:10:24.07:0,24,283 0/0:9,4:13:21.03:0,21,229 0/0:8,2:10:15.05:0,15,179 0/0:5,0:5:12.03:0,12,140 0/0:6,1:7:15.04:0,15,169 0/0:6,3:9:11.62:0,12,111 0/0:9,1:10:21.06:0,21,246 0/0:20,5:26:48.11:0,48,544 0/0:12,0:12:24.07:0,24,279 0/0:5,2:8:12.03:0,12,145 0/0:6,2:8:15.04:0,15,173 0/0:12,3:16:2.06:2,0,306 0/0:19,2:21:42.10:0,42,467 0/1:4,4:8:54.52:55,0,99 0/0:9,1:10:12.03:0,12,138 0/0:7,2:9:12.04:0,12,147 0/0:6,1:7:18.05:0,18,215 0/0:6,1:7:12.04:0,12,151 0/0:5,1:6:9.02:0,9,100 0/0:5,0:5:9.03:0,9,109 0/0:4,1:5:6.02:0,6,71 0/0:8,3:11:15.05:0,15,185 0/0:8,3:11:15.05:0,15,181 0/0:8,4:12:15.05:0,15,183 0/0:11,4:15:21.06:0,21,250 0/0:5,2:7:15.05:0,15,182 0/0:8,5:13:15.05:0,15,186 ./. 0/0:5,1:6:12.03:0,12,135 0/0:8,0:8:15.05:0,15,188 0/0:1,2:3:3.01:0,3,37 0/0:8,3:11:15.05:0,15,184 0/0:7,4:11:21.05:0,21,238 0/0:5,1:6:12.04:0,12,146 0/0:7,0:7:18.03:0,18,205 16 3165425 . A G 35458.88 . AC=34;AF=0.405;AN=84;BaseQRankSum=-0.264;DP=3559;Dels=0.00;FS=1.804;HRun=0;HaplotypeScore=2.1076;InbreedingCoeff=-0.0871;MQ=59.29;MQ0=1;MQRankSum=0.598;QD=15.20;ReadPosRankSum=-0.298 GT:AD:DP:GQ:PL 0/0:62,0:62:99:0,159,1878 0/1:35,31:66:99:773,0,880 1/1:0,45:45:99:1484,126,0 0/1:82,80:162:99:2218,0,2193 1/1:0,104:105:99:3480,280,0 0/0:113,0:113:99:0,292,3591 0/1:58,42:100:99:1156,0,1592 0/0:117,0:117:99:0,322,3879 0/0:65,0:65:99:0,181,2137 0/1:21,29:50:99:764,0,494 0/1:30,32:62:99:871,0,806 0/1:26,23:50:99:503,0,776 0/1:32,19:51:99:462,0,750 0/0:63,0:63:99:0,168,1987 0/1:116,73:189:99:1768,0,3072 0/1:25,27:52:99:726,0,631 0/1:31,27:58:99:558,0,891 0/1:28,39:67:99:1043,0,749 0/1:57,48:105:99:1159,0,1484 0/0:167,0:170:99:0,418,5090 1/1:0,92:95:99:2799,238,0 0/1:48,35:83:99:832,0,1288 0/1:102,75:177:99:1895,0,2697 0/0:101,1:102:99:0,239,3259 0/0:120,0:121:99:0,316,3785 0/0:104,0:104:99:0,256,3146 0/0:52,0:53:99:0,141,1681 0/0:57,0:57:99:0,147,1746 0/0:56,0:56:99:0,147,1740 1/1:1,64:65:99:1977,142,0 0/1:29,32:61:99:800,0,781 1/1:0,104:105:99:3115,256,0 0/1:54,27:81:99:673,0,1402 0/0:62,0:62:99:0,181,2121 0/0:80,1:81:99:0,214,2507 0/1:44,27:71:99:645,0,1125 0/1:72,48:121:99:1152,0,2014 0/1:30,41:71:99:978,0,797 1/1:1,58:59:99:1823,127,0 0/1:40,26:67:99:694,0,1072 0/1:41,26:67:99:655,0,1124 0/1:31,17:48:99:455,0,930 16 3534781 . A G 107.88 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.198;DP=419;Dels=0.00;FS=1.854;HRun=1;HaplotypeScore=0.4225;InbreedingCoeff=-0.0207;MQ=57.95;MQ0=0;MQRankSum=0.683;QD=13.49;ReadPosRankSum=1.306 GT:AD:DP:GQ:PL 0/0:21,0:21:60.15:0,60,710 0/0:5,0:5:12.03:0,12,137 0/0:11,0:11:30.07:0,30,343 0/0:10,0:10:27.07:0,27,327 0/0:10,0:10:27.05:0,27,295 0/0:12,0:12:33.09:0,33,409 0/0:8,0:8:24.07:0,24,291 0/0:7,0:7:18.05:0,18,219 0/0:11,0:11:30.06:0,30,345 0/0:5,0:5:9.03:0,9,112 0/0:6,0:6:18.06:0,18,222 0/0:8,0:8:21.07:0,21,264 0/0:7,0:7:15.05:0,15,191 0/0:16,0:16:45.12:0,45,532 0/0:20,0:20:54.16:0,54,639 0/0:7,0:7:15.05:0,15,184 0/0:13,0:13:39.12:0,39,479 0/0:9,0:9:24.06:0,24,285 0/0:10,0:10:30.09:0,30,360 0/0:14,0:14:27.08:0,27,350 0/0:10,0:10:27.08:0,27,325 0/0:17,0:17:45.12:0,45,521 0/0:19,0:19:42.13:0,42,538 0/0:4,0:4:12.04:0,12,154 0/0:4,0:4:12.03:0,12,144 0/0:6,0:6:15.05:0,15,188 0/0:7,0:7:15.05:0,15,181 0/0:9,0:9:27.08:0,27,324 0/0:5,0:5:12.04:0,12,149 0/0:11,0:11:24.07:0,24,295 0/0:12,0:12:24.08:0,24,303 0/0:19,0:19:45.13:0,45,553 0/1:3,5:8:52.77:154,0,53 0/0:6,0:6:12.04:0,12,144 0/0:8,0:8:18.06:0,18,234 0/0:6,0:6:18.05:0,18,215 0/0:17,0:17:39.11:0,39,464 0/0:5,0:5:15.05:0,15,186 0/0:10,0:10:30.09:0,30,366 0/0:7,0:7:18.06:0,18,226 0/0:5,0:5:15.04:0,15,174 0/0:14,0:14:39.11:0,39,477 16 3534831 . C G 148.66 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.695;DP=288;Dels=0.00;FS=5.833;HRun=2;HaplotypeScore=0.2997;InbreedingCoeff=-0.0457;MQ=57.74;MQ0=0;MQRankSum=1.495;QD=13.51;ReadPosRankSum=0.171 GT:AD:DP:GQ:PL 0/0:10,0:10:30.10:0,30,379 0/0:5,0:5:15.05:0,15,195 0/0:6,0:6:15.05:0,15,187 0/0:9,0:9:27.09:0,27,355 0/0:9,0:9:27.09:0,27,344 0/0:9,0:9:24.06:0,24,288 0/0:4,0:4:12.03:0,12,147 0/0:1,0:1:3.01:0,3,42 0/0:11,0:11:27.08:0,27,325 0/0:4,0:4:12.04:0,12,149 0/0:4,0:5:12.04:0,12,146 0/0:4,0:4:12.04:0,12,150 0/0:5,0:5:15.05:0,15,179 0/0:13,0:13:39.12:0,39,480 0/0:15,0:15:36.11:0,36,452 0/0:6,0:6:18.05:0,18,208 0/0:8,0:8:24.07:0,24,296 0/0:4,0:4:12.02:0,12,139 0/0:12,0:12:30.09:0,30,375 0/0:9,0:9:27.08:0,27,337 0/0:11,0:11:30.09:0,30,376 0/0:4,0:4:12.04:0,12,149 0/0:11,0:11:30.10:0,30,406 0/0:1,0:1:3.01:0,3,36 0/0:5,0:5:12.04:0,12,165 0/0:7,0:7:21.04:0,21,250 0/0:3,0:3:9.03:0,9,116 0/0:10,0:10:30.09:0,30,366 0/0:5,0:5:15.04:0,15,181 0/0:8,0:8:24.07:0,24,292 0/0:8,0:8:24.07:0,24,289 0/0:8,0:8:24.07:0,24,291 0/0:4,0:4:12.04:0,12,154 0/0:7,0:7:21.05:0,21,257 0/0:6,0:6:15.05:0,15,195 0/0:7,0:7:21.07:0,21,258 0/0:8,0:10:21.06:0,21,259 0/0:3,0:3:9.03:0,9,115 0/0:5,0:5:15.05:0,15,185 0/1:2,3:5:61.33:92,0,61 0/1:2,4:6:57.51:119,0,58 0/0:5,0:5:12.04:0,12,151 16 3580641 . C A 683.48 . AC=18;AF=0.214;AN=84;BaseQRankSum=-10.499;DP=943;Dels=0.00;FS=283.877;HRun=2;HaplotypeScore=1.6990;InbreedingCoeff=-0.2845;MQ=59.03;MQ0=0;MQRankSum=-0.067;QD=1.80;ReadPosRankSum=-6.574 GT:AD:DP:GQ:PL 0/0:13,10:23:30.09:0,30,359 0/1:17,18:35:79.82:80,0,490 0/0:8,11:19:24.07:0,24,286 0/0:29,2:31:66.16:0,66,799 0/0:17,2:19:36.12:0,36,477 0/0:15,9:24:39.13:0,39,506 0/1:14,14:28:7.71:8,0,309 0/0:18,11:29:0.86:0,1,403 0/1:9,13:22:36.83:37,0,225 0/1:11,4:15:42.41:42,0,352 0/1:11,11:22:44.66:45,0,304 0/0:14,10:24:4.45:0,4,350 0/1:7,8:15:79.85:80,0,158 0/0:10,9:19:0.37:0,0,227 0/0:39,8:47:90.25:0,90,1065 0/0:8,5:13:18.05:0,18,205 0/1:14,13:27:84.53:85,0,329 0/0:17,1:18:39.11:0,39,478 0/0:18,1:19:39.11:0,39,471 0/0:28,5:33:69.13:0,69,809 0/0:19,1:20:39.11:0,39,466 0/0:18,11:29:48.12:0,48,567 0/0:21,5:26:35.48:0,35,665 0/0:9,9:18:24.08:0,24,304 0/0:16,0:16:42.13:0,42,542 0/0:10,5:15:27.08:0,27,343 0/1:7,7:14:34.13:34,0,167 0/0:24,2:26:54.17:0,54,663 0/1:10,12:22:11.18:11,0,233 0/1:10,13:23:99:122,0,283 0/1:10,8:18:4.57:5,0,247 0/0:36,2:38:48.50:0,48,807 0/1:15,16:31:30.49:30,0,459 0/0:16,2:18:33.08:0,33,381 0/1:13,8:21:30.70:31,0,319 0/0:21,2:23:57.12:0,57,645 0/0:16,1:17:35.95:0,36,425 0/1:9,17:26:82.83:83,0,225 0/1:10,6:16:9.38:9,0,215 0/1:6,8:14:99:102,0,162 0/1:9,4:13:14.45:14,0,161 0/1:9,8:17:25.16:25,0,259 16 3580641 . C CA 1268.42 . 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A C 716.40 . AC=4;AF=0.048;AN=84;BaseQRankSum=4.379;DP=892;Dels=0.00;FS=0.748;HRun=1;HaplotypeScore=0.8055;InbreedingCoeff=-0.0500;MQ=57.86;MQ0=0;MQRankSum=-0.484;QD=10.54;ReadPosRankSum=0.582 GT:AD:DP:GQ:PL 0/0:11,0:11:30.07:0,30,334 0/0:16,0:16:45.13:0,45,524 0/0:20,0:20:60.17:0,60,686 0/0:31,0:31:78.23:0,78,942 0/0:26,0:26:72.21:0,72,839 0/0:16,0:16:45.14:0,45,541 0/0:18,0:18:51.15:0,51,611 0/0:12,0:12:33.09:0,33,387 0/0:18,0:18:51.13:0,51,569 0/0:18,0:18:45.14:0,45,556 0/0:17,0:17:48.14:0,48,551 0/0:24,0:24:63.18:0,63,747 0/0:14,0:14:39.11:0,39,447 0/0:21,0:21:63.19:0,63,741 0/0:68,0:68:99:0,190,2183 0/0:30,0:30:87.23:0,87,988 0/0:14,0:14:42.11:0,42,473 0/0:11,0:11:33.10:0,33,387 0/0:19,0:19:51.15:0,51,596 0/0:31,0:31:84.25:0,84,1002 0/0:37,1:38:96.29:0,96,1156 0/0:20,0:20:48.15:0,48,589 0/0:29,0:29:75.23:0,75,912 0/0:16,0:16:42.13:0,42,516 0/0:22,0:22:60.17:0,60,710 0/0:15,0:15:36.10:0,36,430 0/0:20,0:20:60.17:0,60,690 0/0:15,0:15:39.12:0,39,474 0/0:21,0:21:63.19:0,63,733 0/1:6,7:13:99:160,0,177 0/0:18,0:18:45.14:0,45,541 0/0:24,0:24:57.16:0,57,692 0/1:12,10:22:99:310,0,328 0/0:21,0:21:51.16:0,51,626 0/0:18,0:19:51.13:0,51,592 0/0:14,1:15:42.12:0,42,488 0/0:25,0:25:72.20:0,72,843 0/0:34,0:34:81.24:0,81,988 0/0:18,0:18:51.15:0,51,603 0/1:8,4:13:99:100,0,251 0/0:19,0:19:48.15:0,48,590 0/1:12,8:20:99:233,0,365 16 3721773 . G C 5023.17 . 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G A 1166.50 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.405;DP=2207;Dels=0.00;FS=6.763;HRun=0;HaplotypeScore=1.5511;InbreedingCoeff=-0.0120;MQ=59.15;MQ0=0;MQRankSum=0.375;QD=11.66;ReadPosRankSum=-0.607 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,132,1472 0/0:46,0:46:99:0,120,1374 0/0:35,0:35:93.25:0,93,1070 0/0:81,0:82:99:0,208,2618 0/0:71,0:71:99:0,178,2227 0/0:52,0:52:99:0,126,1591 0/0:50,0:50:99:0,135,1635 0/0:48,0:48:99:0,120,1506 0/0:47,0:47:99:0,126,1437 0/0:44,0:44:99:0,123,1388 0/0:24,0:24:66.17:0,66,753 0/0:36,0:36:90.25:0,90,1058 0/0:42,0:42:99:0,117,1328 0/0:34,0:34:96.25:0,96,1085 0/0:144,0:144:99:0,370,4243 0/0:49,0:49:99:0,129,1510 0/0:52,0:52:99:0,141,1599 0/0:35,0:35:96.27:0,96,1103 0/0:66,0:66:99:0,174,1928 0/0:77,0:77:99:0,208,2384 0/0:64,0:64:99:0,168,1928 0/0:53,0:53:99:0,144,1661 0/1:55,44:100:99:1213,0,1507 0/0:47,0:47:99:0,126,1534 0/0:48,0:48:99:0,120,1513 0/0:51,0:51:99:0,132,1634 0/0:33,0:33:93.25:0,93,1061 0/0:41,0:41:99:0,111,1238 0/0:46,0:46:99:0,126,1402 0/0:57,0:57:99:0,153,1759 0/0:29,0:29:81.21:0,81,914 0/0:64,0:64:99:0,171,2002 0/0:65,0:65:99:0,162,1889 0/0:44,0:44:99:0,126,1392 0/0:49,0:49:99:0,129,1484 0/0:45,0:45:99:0,123,1388 0/0:73,0:74:99:0,189,2138 0/0:40,0:40:99:0,111,1243 0/0:43,0:43:99:0,108,1221 0/0:48,0:48:99:0,132,1502 0/0:47,0:47:99:0,132,1454 0/0:37,0:37:99:0,105,1143 16 3724465 . G C 16673.96 . 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G A 693.13 . 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C T 1199.91 . 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C T 1303.82 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.785;DP=1468;Dels=0.00;FS=4.822;HRun=0;HaplotypeScore=2.7677;InbreedingCoeff=-0.0245;MQ=58.01;MQ0=0;MQRankSum=1.337;QD=11.96;ReadPosRankSum=3.824 GT:AD:DP:GQ:PL 0/0:29,0:29:75.20:0,75,893 0/0:25,0:25:69.20:0,69,837 0/0:25,0:25:63.18:0,63,742 0/0:79,0:79:99:0,202,2591 0/0:67,1:69:99:0,145,2151 0/1:29,28:57:99:718,0,925 0/0:41,0:41:99:0,108,1394 0/1:26,26:52:99:648,0,702 0/0:23,0:23:66.19:0,66,771 0/0:32,0:32:81.23:0,81,962 0/0:17,0:17:51.15:0,51,603 0/0:26,0:26:72.20:0,72,846 0/0:18,0:18:48.12:0,48,568 0/0:32,0:32:87.26:0,87,1057 0/0:75,0:75:99:0,171,2072 0/0:26,0:26:72.17:0,72,819 0/0:23,1:24:32.77:0,33,740 0/0:22,0:22:60.18:0,60,722 0/0:39,0:41:87.20:0,87,1022 0/0:61,0:61:99:0,147,1823 0/0:35,0:37:75.16:0,75,886 0/0:32,0:32:90.25:0,90,1066 0/0:87,0:87:99:0,247,3097 0/0:35,1:37:99:0,99,1294 0/0:45,0:45:99:0,120,1502 0/0:41,0:41:99:0,108,1342 0/0:9,0:9:24.06:0,24,280 0/0:21,1:22:28.50:0,29,603 0/0:18,0:18:48.11:0,48,538 0/0:28,0:28:72.20:0,72,853 0/0:27,0:28:78.21:0,78,888 0/0:42,0:43:99:0,111,1288 0/0:27,0:27:69.20:0,69,828 0/0:24,0:24:69.21:0,69,829 0/0:22,0:22:60.17:0,60,705 0/0:27,0:28:81.22:0,81,928 0/0:30,0:30:72.20:0,72,871 0/0:31,0:31:78.22:0,78,923 0/0:24,0:24:60.12:0,60,670 0/0:31,0:31:84.25:0,84,1010 0/0:27,0:27:69.20:0,69,824 0/0:23,0:23:66.18:0,66,750 16 3831230 . G T 342.72 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.682;DP=2132;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.0809;InbreedingCoeff=-0.0120;MQ=59.26;MQ0=0;MQRankSum=-0.014;QD=4.97;ReadPosRankSum=1.648 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,105,1348 0/0:34,0:34:90.28:0,90,1156 0/0:38,0:38:99:0,105,1352 0/0:74,0:74:99:0,193,2614 0/0:74,0:74:99:0,190,2600 0/0:55,0:55:99:0,135,1874 0/0:62,0:62:99:0,157,2168 0/0:49,0:49:99:0,126,1723 0/0:49,0:49:99:0,135,1748 0/0:48,0:48:99:0,126,1632 0/0:32,0:32:84.27:0,84,1085 0/0:54,0:54:99:0,141,1804 0/0:35,0:35:99:0,102,1306 0/0:43,0:43:99:0,123,1573 0/0:151,0:151:99:0,373,4824 0/0:48,0:48:99:0,132,1707 0/0:37,0:37:99:0,105,1340 0/0:34,0:34:96.28:0,96,1208 0/0:82,0:82:99:0,211,2716 0/0:70,0:70:99:0,184,2368 0/0:61,1:62:99:0,160,2035 0/0:29,0:29:75.22:0,75,954 0/1:51,18:69:99:389,0,1567 0/0:43,0:43:99:0,111,1530 0/0:58,0:58:99:0,147,2039 0/0:51,0:51:99:0,129,1779 0/0:33,0:33:84.27:0,84,1103 0/0:43,0:43:99:0,114,1488 0/0:40,0:40:99:0,117,1488 0/0:29,0:29:84.27:0,84,1063 0/0:44,0:44:99:0,120,1558 0/0:66,0:66:99:0,156,2041 0/0:35,0:35:99:0,99,1259 0/0:42,0:42:99:0,111,1440 0/0:42,0:42:99:0,114,1469 0/0:46,0:46:99:0,126,1612 0/0:59,0:59:99:0,150,1900 0/0:54,0:54:99:0,138,1793 0/0:45,0:45:99:0,120,1542 0/0:45,0:45:99:0,123,1583 0/0:49,0:49:99:0,126,1636 0/0:42,0:42:99:0,114,1468 16 4033436 . T C 5314.37 . AC=22;AF=0.262;AN=84;BaseQRankSum=14.070;DP=608;Dels=0.00;FS=2.927;HRun=0;HaplotypeScore=0.3501;InbreedingCoeff=-0.1252;MQ=58.83;MQ0=0;MQRankSum=-0.003;QD=15.54;ReadPosRankSum=-0.549 GT:AD:DP:GQ:PL 0/0:14,0:14:39.11:0,39,459 0/0:10,0:10:24.07:0,24,278 0/0:10,0:10:30.09:0,30,351 0/1:15,11:26:99:341,0,390 0/1:12,6:18:99:181,0,382 0/0:13,0:13:36.11:0,36,445 0/0:11,0:11:30.09:0,30,375 0/0:15,0:15:39.12:0,39,479 0/1:2,11:13:35.27:355,0,35 0/1:6,12:18:99:334,0,161 0/1:5,7:12:99:201,0,109 0/1:7,7:14:99:195,0,208 1/1:0,9:9:27.09:340,27,0 0/0:15,0:15:36.11:0,36,439 0/1:22,31:53:99:884,0,589 0/1:9,11:20:99:330,0,258 0/1:5,8:13:99:236,0,142 0/0:12,1:13:0.53:0,1,374 0/0:25,0:25:66.20:0,66,807 0/1:20,13:33:99:373,0,542 0/0:14,0:14:42.13:0,42,503 0/0:12,0:12:27.08:0,27,330 0/1:18,7:25:99:211,0,531 0/0:7,0:7:15.05:0,15,200 0/0:10,0:10:27.07:0,27,318 0/0:14,0:14:27.07:0,27,337 0/1:9,8:17:99:229,0,243 0/1:5,2:7:56.83:57,0,155 0/0:8,0:8:18.05:0,18,215 0/1:5,6:11:99:175,0,102 0/1:3,3:6:91.18:98,0,91 0/0:17,0:17:45.12:0,45,530 0/0:9,0:9:27.07:0,27,307 0/1:8,7:15:99:217,0,213 1/1:0,9:9:24.07:295,24,0 0/1:3,4:7:88.53:97,0,89 0/0:13,0:13:30.09:0,30,387 0/0:9,0:9:21.06:0,21,249 0/0:11,0:11:33.10:0,33,388 0/0:7,0:7:18.05:0,18,215 0/0:9,0:9:27.08:0,27,321 0/1:10,6:16:99:165,0,277 16 4311936 . C G 55.29 . AC=9;AF=0.107;AN=84;BaseQRankSum=-6.406;DP=613;Dels=0.00;FS=113.412;HRun=1;HaplotypeScore=0.6608;InbreedingCoeff=-0.1677;MQ=58.20;MQ0=0;MQRankSum=1.278;QD=0.68;ReadPosRankSum=-4.936 GT:AD:DP:GQ:PL 0/1:3,7:10:19.52:20,0,95 0/0:9,5:14:27.08:0,27,320 0/0:11,4:15:27.07:0,27,311 0/0:18,9:27:45.14:0,45,564 0/0:22,12:34:57.18:0,57,725 0/0:11,3:14:18.05:0,18,219 0/0:12,7:19:24.08:0,24,312 0/0:15,4:19:33.11:0,33,432 0/0:9,5:15:0.85:7,0,212 0/1:4,4:8:17.59:18,0,88 0/0:6,1:7:15.05:0,15,181 0/1:5,4:9:18.39:18,0,120 0/1:4,3:7:16.51:17,0,131 0/0:7,3:10:12.02:0,12,127 0/0:27,8:35:60.16:0,60,695 0/0:6,5:11:9.50:0,9,101 0/0:12,2:14:27.06:0,27,313 0/1:7,4:12:13.50:13,0,161 0/0:13,3:16:2.84:0,0,314 0/0:22,10:32:48.11:0,48,541 0/0:16,6:22:14.51:0,15,444 0/0:8,3:11:23.10:0,23,249 0/0:23,14:37:18.61:0,19,669 0/1:6,4:10:7.65:8,0,142 0/0:18,9:27:24.48:0,24,615 0/0:12,3:15:30.09:0,30,375 0/0:7,1:8:12.04:0,12,153 0/0:13,5:18:33.10:0,33,390 0/0:3,2:5:9:0,9,95 0/0:6,3:9:9.02:0,9,101 0/0:3,3:6:9.02:0,9,104 0/0:20,4:24:36.06:0,36,393 0/0:9,2:11:2.27:2,0,223 0/0:8,3:11:24.07:0,24,283 0/0:9,3:12:1.97:2,0,274 0/1:3,6:9:48.19:54,0,48 0/0:9,2:11:27.07:0,27,299 0/1:5,2:7:10.65:11,0,131 0/1:6,3:9:9.62:10,0,150 0/0:5,1:6:9.03:0,9,105 0/0:6,5:11:15.04:0,15,177 0/0:3,3:6:9.02:0,9,99 16 4382351 . C A 64.89 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.371;DP=970;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4594;InbreedingCoeff=-0.0125;MQ=59.28;MQ0=0;MQRankSum=0.159;QD=5.90;ReadPosRankSum=1.431 GT:AD:DP:GQ:PL 0/0:13,0:13:27.07:0,27,329 0/0:13,0:13:36.10:0,36,426 0/0:12,0:12:33.09:0,33,379 0/0:70,0:70:99:0,175,2232 0/0:56,0:56:99:0,147,1926 0/0:32,0:32:81.25:0,81,1082 0/0:29,0:29:72.21:0,72,883 0/0:40,0:40:96.28:0,96,1239 0/0:16,0:16:36.11:0,36,453 0/0:15,0:15:42.12:0,42,488 0/1:7,4:11:99:111,0,178 0/0:7,1:8:18.05:0,18,218 0/0:10,0:10:30.06:0,30,333 0/0:11,0:11:24.07:0,24,283 0/0:51,0:51:99:0,132,1582 0/0:18,0:18:45.13:0,45,530 0/0:17,0:17:45.12:0,45,523 0/0:14,0:14:36.10:0,36,414 0/0:28,0:28:72.19:0,72,837 0/0:45,0:45:99:0,114,1357 0/0:28,0:28:66.19:0,66,802 0/0:27,0:27:75.16:0,75,855 0/0:50,0:50:99:0,129,1638 0/0:18,0:18:45.14:0,45,578 0/0:29,0:29:66.19:0,66,859 0/0:26,0:26:69.22:0,69,900 0/0:10,0:10:27.07:0,27,304 0/0:18,0:18:54.16:0,54,640 0/0:11,0:11:30.08:0,30,326 0/0:12,0:12:30.08:0,30,350 0/0:16,0:16:45.09:0,45,512 0/0:29,1:30:72.21:0,72,869 0/0:21,0:21:60.15:0,60,690 0/0:8,0:8:24.07:0,24,277 0/0:24,0:24:66.18:0,66,768 0/0:12,0:12:30.07:0,30,353 0/0:29,0:29:66.19:0,66,803 0/0:22,0:22:54.14:0,54,646 0/0:23,0:23:60.17:0,60,719 0/0:15,0:15:39.11:0,39,469 0/0:8,0:8:24.03:0,24,244 0/0:24,0:24:63.17:0,63,754 16 4409351 . G A 424.70 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.342;DP=994;Dels=0.00;FS=0.877;HRun=0;HaplotypeScore=0.6166;InbreedingCoeff=-0.0251;MQ=58.85;MQ0=0;MQRankSum=1.023;QD=10.36;ReadPosRankSum=2.029 GT:AD:DP:GQ:PL 0/0:22,0:22:63.16:0,63,713 0/0:16,0:16:42.12:0,42,505 0/0:12,0:12:30.08:0,30,354 0/0:51,0:51:99:0,135,1655 0/0:43,0:43:99:0,111,1345 0/0:32,0:32:84.24:0,84,1037 0/0:21,0:21:54.16:0,54,678 0/0:25,0:25:69.21:0,69,846 0/0:20,0:20:60.16:0,60,677 0/0:19,0:19:51.16:0,51,638 0/0:18,0:18:48.15:0,48,599 0/0:14,0:14:39.10:0,39,451 0/0:20,0:20:60.17:0,60,688 0/0:13,0:13:39.11:0,39,455 0/0:55,0:56:99:0,147,1702 0/0:14,0:14:42.11:0,42,472 0/0:18,0:18:48.14:0,48,565 0/0:13,0:15:39.10:0,39,446 0/0:28,0:28:78.22:0,78,902 0/0:50,0:50:99:0,129,1488 0/0:33,0:33:78.22:0,78,934 0/0:31,0:31:78.21:0,78,904 0/0:43,0:43:99:0,114,1433 0/0:27,0:27:69.21:0,69,854 0/0:34,0:34:84.26:0,84,1080 0/0:16,0:16:45.10:0,45,535 0/0:16,1:17:12.62:0,13,452 0/0:15,0:15:42.09:0,42,463 0/0:15,0:15:39.11:0,39,462 0/0:16,0:16:48.13:0,48,554 0/0:17,0:17:45.11:0,45,514 0/0:25,0:25:66.18:0,66,749 0/0:25,0:25:66.18:0,66,749 0/0:22,0:22:60.18:0,60,733 0/0:22,0:22:54.16:0,54,643 0/0:16,0:16:39.10:0,39,446 0/1:12,11:23:99:300,0,264 0/0:17,0:17:42.12:0,42,521 0/1:10,8:18:99:187,0,281 0/0:14,0:14:39.10:0,39,434 0/0:16,0:16:48.12:0,48,550 0/0:25,0:25:63.15:0,63,721 16 4437986 . C T 294.99 . 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G A 29737.41 . 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C T 2598.53 . 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T C 3344.79 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.591;DP=8407;DS;Dels=0.00;FS=1.079;HRun=3;HaplotypeScore=5.7978;InbreedingCoeff=-0.0120;MQ=59.22;MQ0=0;MQRankSum=0.494;QD=14.93;ReadPosRankSum=0.848 GT:AD:DP:GQ:PL 0/0:180,0:180:99:0,497,6140 0/0:179,1:180:99:0,472,6161 0/0:172,0:172:99:0,472,5806 0/0:249,1:250:99:0,695,8679 0/0:249,1:250:99:0,710,8875 0/0:247,1:248:99:0,649,8394 0/1:106,118:224:99:3345,0,2958 0/0:249,0:250:99:0,683,8452 0/0:193,0:193:99:0,539,6616 0/0:153,0:153:99:0,427,5204 0/0:161,0:161:99:0,442,5407 0/0:164,0:164:99:0,469,5679 0/0:137,0:137:99:0,388,4746 0/0:156,0:156:99:0,448,5497 0/0:249,1:250:99:0,716,8580 0/0:164,0:164:99:0,475,5761 0/0:181,0:182:99:0,502,6085 0/0:153,0:154:99:0,427,5248 0/0:250,0:250:99:0,689,8358 0/0:247,0:248:99:0,683,8429 0/0:249,1:250:99:0,689,8432 0/0:238,0:238:99:0,644,7885 0/0:250,0:250:99:0,719,8957 0/0:232,0:232:99:0,644,8069 0/0:249,0:250:99:0,677,8481 0/0:217,0:217:99:0,599,7510 0/0:142,0:143:99:0,385,4738 0/0:155,1:156:99:0,430,5242 0/0:158,0:158:99:0,451,5513 0/0:171,1:172:99:0,490,5987 0/0:161,1:163:99:0,454,5560 0/0:250,0:250:99:0,704,8647 0/0:208,0:209:99:0,581,7083 0/0:180,0:180:99:0,503,6200 0/0:202,0:202:99:0,560,6862 0/0:186,0:186:99:0,515,6298 0/0:249,1:250:99:0,689,8267 0/0:189,0:190:99:0,542,6564 0/0:185,1:188:99:0,504,6418 0/0:188,1:189:99:0,539,6535 0/0:170,0:171:99:0,484,5858 0/0:196,1:197:99:0,545,6683 16 4747407 . G A 2649.87 . 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T G 2685.42 . AC=2;AF=0.024;AN=84;BaseQRankSum=10.488;DP=2255;Dels=0.00;FS=7.905;HRun=0;HaplotypeScore=1.0734;InbreedingCoeff=-0.0244;MQ=59.27;MQ0=0;MQRankSum=0.383;QD=15.26;ReadPosRankSum=0.397 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,111,1315 0/0:38,0:38:99:0,99,1185 0/0:43,0:43:99:0,105,1248 0/0:77,0:77:99:0,202,2448 0/0:61,0:61:99:0,159,1907 0/0:67,0:67:99:0,168,2086 0/0:57,0:57:99:0,150,1827 0/0:66,0:66:99:0,162,2004 0/0:55,0:55:99:0,150,1795 0/0:51,0:51:99:0,129,1546 0/0:39,0:39:99:0,114,1366 0/0:50,0:50:99:0,126,1539 0/0:33,0:33:84.25:0,84,1014 0/0:34,0:34:99:0,102,1195 0/1:73,73:146:99:2114,0,1828 0/1:10,20:30:99:634,0,137 0/0:50,0:50:99:0,132,1609 0/0:38,0:38:99:0,105,1221 0/0:70,0:71:99:0,199,2409 0/0:76,0:76:99:0,205,2466 0/0:86,0:86:99:0,232,2809 0/0:47,0:47:99:0,120,1450 0/0:73,0:73:99:0,199,2389 0/0:60,0:60:99:0,150,1865 0/0:60,0:60:99:0,153,1876 0/0:47,0:47:99:0,123,1522 0/0:34,0:34:93.27:0,93,1117 0/0:42,0:42:99:0,120,1429 0/0:38,0:38:99:0,99,1169 0/0:50,0:50:99:0,141,1675 0/0:36,0:36:99:0,102,1246 0/0:69,0:69:99:0,181,2233 0/0:55,0:55:99:0,153,1801 0/0:46,0:46:99:0,135,1569 0/0:43,0:43:99:0,117,1396 0/0:45,0:45:99:0,132,1540 0/0:64,0:64:99:0,177,2092 0/0:56,0:56:99:0,153,1836 0/0:43,0:43:99:0,120,1435 0/0:63,0:63:99:0,175,2114 0/0:41,0:41:99:0,114,1344 0/0:34,0:34:96.29:0,96,1160 16 4774822 . A C 1690.87 . AC=2;AF=0.024;AN=84;BaseQRankSum=7.997;DP=1746;Dels=0.00;FS=3.859;HRun=1;HaplotypeScore=0.9811;InbreedingCoeff=-0.0244;MQ=59.37;MQ0=0;MQRankSum=-1.704;QD=13.53;ReadPosRankSum=1.561 GT:AD:DP:GQ:PL 0/0:33,0:33:93.26:0,93,1083 0/0:34,0:34:93.28:0,93,1128 0/0:31,0:31:93.25:0,93,1077 0/0:58,0:58:99:0,162,1946 0/0:39,0:39:99:0,114,1384 0/0:47,0:47:99:0,141,1731 0/0:33,0:33:87.27:0,87,1080 0/0:43,0:43:99:0,111,1366 0/0:43,0:43:99:0,120,1409 0/0:41,0:41:99:0,111,1333 0/0:31,0:31:81.25:0,81,985 0/0:43,0:43:99:0,120,1461 0/0:24,0:24:66.20:0,66,790 0/0:31,0:31:87.25:0,87,1025 0/0:127,0:128:99:0,337,4049 0/0:29,0:29:87.26:0,87,1024 0/0:35,0:35:99:0,99,1172 0/0:29,0:29:84.25:0,84,992 0/1:34,22:56:99:675,0,917 0/1:30,39:69:99:1078,0,891 0/0:64,0:64:99:0,187,2229 0/0:35,0:35:90.27:0,90,1073 0/0:60,0:60:99:0,153,1878 0/0:41,0:41:99:0,105,1304 0/0:38,0:38:99:0,99,1221 0/0:41,0:41:99:0,111,1346 0/0:29,0:29:78.24:0,78,964 0/0:38,0:38:93.29:0,93,1151 0/0:37,0:37:99:0,99,1205 0/0:33,0:33:84.25:0,84,1017 0/0:26,0:26:72.22:0,72,865 0/0:53,0:53:99:0,135,1674 0/0:41,0:41:99:0,117,1401 0/0:31,0:31:90.26:0,90,1045 0/0:37,0:37:99:0,99,1225 0/0:42,1:43:89.64:0,90,1295 0/0:44,0:45:99:0,120,1437 0/0:44,0:44:99:0,120,1433 0/0:31,0:31:93.28:0,93,1093 0/0:45,0:45:99:0,126,1500 0/0:28,0:28:78.23:0,78,938 0/0:29,0:29:84.25:0,84,1000 16 4780109 . C G 1072.09 . 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G A 461.38 . 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C T 5407.25 . AC=15;AF=0.179;AN=84;BaseQRankSum=0.258;DP=1017;Dels=0.00;FS=1.498;HRun=0;HaplotypeScore=0.5668;InbreedingCoeff=-0.0553;MQ=59.10;MQ0=0;MQRankSum=-1.265;QD=16.09;ReadPosRankSum=0.714 GT:AD:DP:GQ:PL 0/0:34,0:34:96.28:0,96,1176 0/1:14,10:24:99:309,0,396 0/1:6,9:15:99:293,0,134 0/0:35,0:35:93.30:0,93,1216 0/0:30,0:30:81.26:0,81,1076 0/0:27,0:27:63.20:0,63,832 0/0:22,0:22:60.18:0,60,778 0/0:26,0:26:72.21:0,72,915 0/0:21,0:21:57.17:0,57,689 0/0:20,0:20:54.16:0,54,648 0/0:9,0:9:21.07:0,21,275 0/0:22,0:22:60.18:0,60,723 0/1:4,12:17:91.87:360,0,92 0/0:25,0:25:66.21:0,66,846 0/1:40,24:64:99:621,0,1138 0/0:19,0:19:54.16:0,54,662 0/1:12,13:25:99:415,0,332 0/0:18,0:18:48.14:0,48,596 0/0:31,0:31:84.24:0,84,1015 0/0:39,0:39:99:0,102,1253 0/0:27,0:27:75.21:0,75,906 0/1:11,8:19:99:248,0,293 0/0:33,0:33:87.27:0,87,1157 0/1:6,11:17:99:362,0,188 0/0:15,0:15:45.14:0,45,580 0/1:10,10:20:99:323,0,283 0/1:8,2:10:46.28:46,0,266 0/1:15,14:29:99:412,0,458 0/0:24,0:24:66.19:0,66,800 1/1:0,25:25:69.21:860,69,0 0/1:13,9:22:99:210,0,396 0/0:18,0:18:45.13:0,45,565 0/1:10,18:28:99:524,0,289 0/0:21,0:21:60.17:0,60,717 0/0:19,0:19:54.16:0,54,669 0/0:26,0:26:75.21:0,75,898 0/0:31,0:31:81.23:0,81,997 0/0:27,0:27:81.22:0,81,942 0/0:21,0:21:60.18:0,60,717 0/0:25,0:25:72.22:0,72,887 0/0:16,0:16:39.08:0,39,480 0/1:8,13:21:99:426,0,227 16 4861709 . G C 50212.97 . AC=84;AF=1.000;AN=84;BaseQRankSum=1.659;DP=1426;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.1407;InbreedingCoeff=-0.0000;MQ=58.78;MQ0=0;MQRankSum=1.097;QD=35.21;ReadPosRankSum=0.246 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1434,114,0 1/1:0,27:27:69.20:858,69,0 1/1:0,28:28:84.22:999,84,0 1/1:0,41:42:99:1562,120,0 1/1:0,31:31:90.28:1148,90,0 1/1:0,41:41:99:1447,111,0 1/1:0,33:33:93.30:1234,93,0 1/1:0,33:34:96.29:1250,96,0 1/1:0,30:30:87.27:1074,87,0 1/1:0,31:31:84.24:1036,84,0 1/1:0,31:32:93.26:1117,93,0 1/1:0,28:28:81.24:993,81,0 1/1:0,30:30:84.24:992,84,0 1/1:0,22:22:63.18:765,63,0 1/1:0,72:72:99:2548,208,0 1/1:0,23:23:66.17:789,66,0 1/1:0,31:31:84.25:1040,84,0 1/1:0,39:39:99:1420,117,0 1/1:0,38:38:99:1263,105,0 1/1:0,55:55:99:1862,150,0 1/1:1,30:31:84.27:1067,84,0 1/1:0,31:31:81.22:988,81,0 1/1:0,59:59:99:2115,163,0 1/1:0,33:33:96.31:1280,96,0 1/1:1,35:36:84.65:1341,85,0 1/1:0,29:29:81.25:1028,81,0 1/1:0,28:28:72.23:903,72,0 1/1:0,37:37:99:1311,105,0 1/1:0,29:29:84.24:1016,84,0 1/1:0,27:27:72.21:868,72,0 1/1:0,37:37:99:1254,102,0 1/1:0,44:44:99:1611,126,0 1/1:0,33:33:93.27:1149,93,0 1/1:0,27:27:81.25:999,81,0 1/1:0,26:26:75.22:910,75,0 1/1:0,27:27:78.24:955,78,0 1/1:0,41:41:99:1457,117,0 1/1:0,30:30:84.24:1024,84,0 1/1:0,18:18:54.17:676,54,0 1/1:0,32:32:96.28:1183,96,0 1/1:0,32:32:90.28:1130,90,0 1/1:0,32:32:90.27:1117,90,0 16 4940316 . C T 451.73 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.148;DP=1240;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9095;InbreedingCoeff=-0.0244;MQ=59.15;MQ0=0;MQRankSum=0.094;QD=11.89;ReadPosRankSum=1.715 GT:AD:DP:GQ:PL 0/0:28,0:28:84.19:0,84,896 0/0:23,0:23:66.15:0,66,718 0/0:12,0:12:36.06:0,36,374 0/0:49,0:49:99:0,132,1604 0/0:59,0:59:99:0,165,1899 0/0:40,0:40:99:0,117,1355 0/0:37,1:38:60.72:0,61,1136 0/0:43,0:43:99:0,108,1280 0/0:27,0:27:75.18:0,75,811 0/0:17,0:17:51.10:0,51,540 0/0:26,0:26:75.15:0,75,804 0/0:16,0:16:48.11:0,48,516 0/0:26,0:26:75.15:0,75,787 0/0:22,0:22:63.17:0,63,707 0/0:72,0:72:99:0,210,2253 0/0:22,0:22:63.14:0,63,682 0/0:23,0:23:66.16:0,66,714 0/0:21,0:21:60.14:0,60,648 0/0:34,0:34:99:0,99,1070 0/0:43,0:43:99:0,120,1328 0/0:39,0:39:99:0,114,1208 0/0:26,0:26:66.16:0,66,722 0/0:54,1:55:99:0,113,1744 0/0:27,0:27:78.23:0,78,926 0/0:38,0:38:99:0,111,1300 0/0:34,0:34:93.26:0,93,1110 0/1:12,9:21:99:270,0,287 0/1:8,9:17:99:245,0,231 0/0:21,0:21:60.14:0,60,654 0/0:19,0:19:54.13:0,54,577 0/0:26,0:26:75.19:0,75,809 0/0:32,0:32:90.22:0,90,969 0/0:30,0:30:81.19:0,81,896 0/0:33,0:33:96.22:0,96,1032 0/0:19,0:19:54.14:0,54,584 0/0:24,0:24:66.18:0,66,737 0/0:25,0:25:69.17:0,69,741 0/0:21,0:21:63.15:0,63,675 0/0:22,0:22:66.16:0,66,707 0/0:26,0:26:72.15:0,72,773 0/0:23,0:23:69.16:0,69,731 0/0:21,0:21:63.15:0,63,685 16 4941887 . G A 4570.63 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.932;DP=4608;DS;Dels=0.00;FS=5.329;HRun=0;HaplotypeScore=3.2125;InbreedingCoeff=-0.0244;MQ=59.40;MQ0=0;MQRankSum=-0.021;QD=13.85;ReadPosRankSum=-0.023 GT:AD:DP:GQ:PL 0/0:100,0:100:99:0,259,2994 0/0:69,0:70:99:0,180,2099 0/0:83,0:83:99:0,238,2738 0/0:245,0:245:99:0,653,8003 0/0:181,0:181:99:0,481,5971 0/0:149,0:149:99:0,403,4957 0/0:102,0:102:99:0,286,3520 0/0:128,0:128:99:0,343,4230 0/0:83,0:83:99:0,208,2440 0/0:77,0:78:99:0,208,2372 0/0:75,0:75:99:0,211,2387 0/0:60,0:60:99:0,162,1791 0/0:71,1:72:99:0,186,2137 0/0:72,0:72:99:0,201,2233 0/0:250,0:250:99:0,665,7581 0/0:82,0:82:99:0,207,2377 0/0:80,0:80:99:0,208,2364 0/0:80,0:80:99:0,220,2514 0/0:146,0:146:99:0,379,4131 0/0:167,0:167:99:0,424,4970 0/1:77,91:168:99:2536,0,1807 0/0:113,0:113:99:0,301,3423 0/0:217,0:217:99:0,605,7375 0/0:121,0:121:99:0,331,4036 0/0:151,0:151:99:0,409,5127 0/0:115,0:115:99:0,310,3779 0/0:63,0:63:99:0,156,1813 0/0:60,0:60:99:0,144,1702 0/0:69,0:70:99:0,180,2041 0/0:77,0:77:99:0,214,2442 0/0:73,0:73:99:0,202,2315 0/1:84,78:162:99:2034,0,1993 0/0:145,0:146:99:0,367,4333 0/0:60,0:60:99:0,171,1952 0/0:63,0:63:99:0,177,2023 0/0:91,0:91:99:0,232,2667 0/0:142,0:142:99:0,382,4312 0/0:93,0:93:99:0,262,2959 0/0:78,0:78:99:0,199,2316 0/0:94,0:94:99:0,259,2941 0/0:68,0:69:99:0,196,2220 0/0:79,0:79:99:0,214,2474 16 4947748 . T C 1021.88 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.828;DP=1224;Dels=0.00;FS=2.936;HRun=1;HaplotypeScore=0.6415;InbreedingCoeff=-0.0244;MQ=59.07;MQ0=0;MQRankSum=0.598;QD=15.03;ReadPosRankSum=0.622 GT:AD:DP:GQ:PL 0/0:16,0:16:42.13:0,42,515 0/0:21,0:21:57.17:0,57,696 0/0:24,0:24:63.19:0,63,750 0/0:58,0:58:99:0,162,1923 0/0:37,0:37:90.25:0,90,1100 0/0:42,0:42:96.31:0,96,1244 0/0:23,0:23:60.14:0,60,745 0/0:41,0:41:99:0,114,1392 0/0:16,0:16:42.11:0,42,505 0/0:22,0:22:66.18:0,66,786 0/0:20,0:20:57.18:0,57,701 0/0:22,0:22:63.18:0,63,751 0/0:20,0:20:51.15:0,51,613 0/0:20,0:20:60.16:0,60,712 0/0:68,0:68:99:0,184,2201 0/0:24,0:24:66.20:0,66,798 0/0:22,0:22:60.18:0,60,733 0/0:22,0:22:57.18:0,57,701 0/0:38,0:38:96.28:0,96,1157 0/1:13,25:38:99:651,0,340 0/0:24,0:25:69.21:0,69,835 0/0:29,0:29:81.20:0,81,962 0/0:62,0:63:99:0,162,1986 0/0:38,0:38:99:0,102,1277 0/0:31,0:31:81.25:0,81,1004 0/0:29,0:29:78.23:0,78,923 0/0:16,0:16:42.12:0,42,514 0/1:12,18:30:99:433,0,358 0/0:21,0:21:51.16:0,51,651 0/0:18,0:18:48.15:0,48,580 0/0:22,0:22:60.18:0,60,745 0/0:54,0:54:99:0,141,1707 0/0:33,0:34:96.24:0,96,1085 0/0:20,0:20:60.19:0,60,743 0/0:31,0:31:87.25:0,87,1033 0/0:29,0:29:81.24:0,81,975 0/0:32,1:33:84.26:0,84,1058 0/0:19,0:20:51.14:0,51,596 0/0:14,0:14:39.11:0,39,466 0/0:26,0:26:72.22:0,72,890 0/0:28,0:28:84.25:0,84,1021 0/0:19,0:19:57.18:0,57,703 16 5038193 . T G 1341.29 . AC=2;AF=0.024;AN=84;BaseQRankSum=7.799;DP=1588;Dels=0.00;FS=19.028;HRun=1;HaplotypeScore=0.8436;InbreedingCoeff=-0.0244;MQ=59.30;MQ0=0;MQRankSum=1.120;QD=14.42;ReadPosRankSum=0.386 GT:AD:DP:GQ:PL 0/0:25,0:25:57.16:0,57,723 0/0:25,0:25:72.21:0,72,866 0/0:34,0:34:96.28:0,96,1158 0/1:29,22:51:99:589,0,815 0/1:15,27:42:99:814,0,410 0/0:28,0:28:78.24:0,78,979 0/0:23,0:23:63.20:0,63,787 0/0:39,0:39:99:0,111,1365 0/0:33,0:33:87.26:0,87,1059 0/0:28,0:28:69.21:0,69,865 0/0:23,0:23:63.19:0,63,766 0/0:39,0:39:96.30:0,96,1228 0/0:29,0:29:78.24:0,78,973 0/0:31,0:31:90.28:0,90,1090 0/0:121,0:121:99:0,295,3690 0/0:22,0:22:57.17:0,57,691 0/0:45,0:45:99:0,123,1511 0/0:32,0:32:75.24:0,75,976 0/0:44,0:44:99:0,111,1372 0/0:70,0:70:99:0,169,2156 0/0:61,0:61:99:0,153,1933 0/0:63,0:63:99:0,153,1932 0/0:57,0:57:99:0,156,1913 0/0:23,0:23:66.20:0,66,812 0/0:28,0:28:75.24:0,75,953 0/0:29,0:29:78.19:0,78,933 0/0:34,0:34:93.29:0,93,1151 0/0:22,0:22:54.17:0,54,684 0/0:23,0:23:66.17:0,66,763 0/0:33,0:33:81.25:0,81,1025 0/0:33,0:33:87.24:0,87,1073 0/0:82,0:82:99:0,205,2592 0/0:35,0:35:99:0,99,1195 0/0:26,0:26:72.20:0,72,874 0/0:24,0:24:72.22:0,72,868 0/0:32,0:32:81.25:0,81,1011 0/0:60,0:60:99:0,144,1806 0/0:24,0:24:63.18:0,63,760 0/0:31,0:31:84.26:0,84,1040 0/0:34,0:35:93.29:0,93,1147 0/0:20,0:20:54.16:0,54,649 0/0:29,0:29:78.23:0,78,946 16 5050897 . G C 11165.43 . AC=41;AF=0.488;AN=84;BaseQRankSum=1.345;DP=669;Dels=0.00;FS=0.288;HRun=0;HaplotypeScore=0.4253;InbreedingCoeff=-0.0949;MQ=58.72;MQ0=0;MQRankSum=0.763;QD=21.15;ReadPosRankSum=0.684 GT:AD:DP:GQ:PL 0/0:9,0:9:27.09:0,27,343 0/0:12,0:12:30.10:0,30,389 0/1:5,2:7:53.02:53,0,143 0/1:17,5:22:99:149,0,486 0/0:29,0:29:66.20:0,66,888 1/1:0,19:19:48.14:645,48,0 0/1:7,5:12:99:181,0,139 1/1:0,30:30:72.23:966,72,0 0/1:8,3:11:67.18:67,0,243 0/0:15,0:15:45.12:0,45,533 1/1:0,12:12:33.10:397,33,0 0/0:13,0:13:30.10:0,30,395 0/1:5,7:12:95.89:193,0,96 0/0:12,0:12:30.10:0,30,384 0/1:18,28:46:99:872,0,400 0/1:8,3:11:81.10:81,0,195 0/1:11,10:21:99:271,0,280 0/1:6,7:13:99:191,0,154 1/1:0,31:31:75.20:933,75,0 1/1:0,32:32:84.23:1053,84,0 0/1:7,23:31:99:702,0,139 0/1:6,8:14:99:180,0,165 1/1:0,29:30:78.24:1039,78,0 0/0:11,0:11:24.08:0,24,333 0/1:12,2:14:45.65:46,0,353 0/0:16,0:16:36.12:0,36,485 0/1:5,3:8:86.36:86,0,131 0/1:8,4:12:99:114,0,196 0/1:5,4:9:99:124,0,167 1/1:0,9:9:27.09:345,27,0 1/1:0,17:17:51.16:647,51,0 0/1:9,6:15:99:189,0,286 0/1:1,8:9:14.50:250,0,14 0/1:6,4:10:99:119,0,195 0/0:11,0:11:33.10:0,33,418 0/1:9,7:16:99:197,0,187 0/1:9,10:19:99:299,0,197 1/1:0,8:8:24.08:297,24,0 0/1:3,5:8:85.90:132,0,86 0/1:5,8:13:99:221,0,139 0/1:3,4:7:83.18:127,0,83 0/0:13,0:13:36.10:0,36,441 16 5061113 . G A 143.88 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.119;DP=429;Dels=0.00;FS=7.017;HRun=0;HaplotypeScore=0.3296;InbreedingCoeff=-0.0320;MQ=58.15;MQ0=0;MQRankSum=0.084;QD=7.99;ReadPosRankSum=-0.387 GT:AD:DP:GQ:PL 0/0:6,0:6:15.04:0,15,176 0/0:9,0:9:27.08:0,27,335 0/0:3,0:3:6.02:0,6,72 0/0:14,0:14:36.11:0,36,466 0/0:15,0:15:42.14:0,42,554 0/0:8,0:8:24.08:0,24,312 0/0:9,0:9:24.06:0,24,298 0/0:8,0:8:18.05:0,18,240 0/0:8,0:8:21.06:0,21,255 0/0:15,0:15:39.12:0,39,486 0/0:6,0:6:15.03:0,15,176 0/0:10,0:10:30.07:0,30,353 0/0:12,0:12:36.10:0,36,436 0/0:8,0:8:24.07:0,24,277 0/0:22,0:22:63.19:0,63,752 0/0:14,0:14:42.13:0,42,512 0/0:10,0:10:24.08:0,24,313 0/0:5,0:5:15:0,15,159 0/0:17,0:17:42.12:0,42,499 0/0:18,0:18:51.15:0,51,613 0/0:8,0:8:21.07:0,21,264 0/0:15,1:16:19.41:0,19,453 0/0:18,0:18:54.17:0,54,695 0/0:8,1:9:24.08:0,24,328 0/0:14,0:14:39.12:0,39,500 0/0:7,0:7:21.07:0,21,268 0/0:4,0:4:12.04:0,12,159 0/0:10,0:10:24.07:0,24,303 0/0:10,0:10:27.09:0,27,343 0/0:9,0:9:18.04:0,18,221 0/0:5,0:5:12.04:0,12,149 0/0:15,0:15:33.08:0,33,386 0/0:9,0:9:24.07:0,24,281 0/1:6,1:7:19.75:20,0,159 0/1:5,6:11:99:185,0,123 0/0:8,0:8:24.08:0,24,302 0/0:13,0:13:36.11:0,36,448 0/0:14,0:14:39.12:0,39,496 0/0:4,0:4:12.03:0,12,139 0/0:5,0:5:15.04:0,15,177 0/0:7,0:7:21.06:0,21,254 0/0:9,0:9:27.08:0,27,323 16 5122041 . C A 12.78 . AC=1;AF=0.012;AN=82;BaseQRankSum=-0.592;DP=353;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.2824;InbreedingCoeff=-0.0296;MQ=55.26;MQ0=0;MQRankSum=2.012;QD=3.20;ReadPosRankSum=-0.377 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,192 0/0:8,0:8:24.06:0,24,272 0/0:6,0:6:18.06:0,18,219 0/0:19,0:19:45.13:0,45,577 0/0:23,0:23:60.16:0,60,771 0/0:7,0:7:21.06:0,21,262 0/0:14,0:14:33.08:0,33,421 0/0:2,1:3:6.01:0,6,60 0/0:10,0:10:27.09:0,27,352 0/0:8,0:8:21.04:0,21,249 0/0:4,0:4:12.02:0,12,132 0/0:3,0:3:6.01:0,6,71 0/0:4,0:4:9.02:0,9,95 0/0:1,0:1:3:0,3,28 0/0:22,0:22:51.09:0,51,561 0/0:8,0:8:21.06:0,21,249 0/0:6,0:6:18.04:0,18,191 0/0:9,0:9:24.07:0,24,278 0/0:8,0:8:21.03:0,21,232 0/0:9,0:9:24.07:0,24,293 0/0:13,0:13:33.09:0,33,389 0/0:5,0:5:12.01:0,12,134 0/0:14,0:14:33.06:0,33,404 0/0:8,0:8:18.06:0,18,235 0/0:5,0:5:12.04:0,12,144 0/0:6,0:6:18.06:0,18,238 0/0:4,0:4:12.04:0,12,145 0/1:2,2:4:58.45:58,0,58 0/0:5,0:5:15.05:0,15,179 0/0:11,0:11:30.07:0,30,343 0/0:5,0:5:15.05:0,15,187 0/0:18,0:18:39.11:0,39,483 0/0:5,0:5:15.04:0,15,183 0/0:8,0:8:24.07:0,24,292 0/0:5,0:5:15.04:0,15,178 0/0:11,0:11:24.08:0,24,319 0/0:16,0:16:36.10:0,36,439 0/0:13,0:13:30.09:0,30,382 0/0:6,0:6:18.04:0,18,220 0/0:6,0:6:12.04:0,12,152 0/0:7,0:7:21.06:0,21,239 ./. 16 5128817 . G A 4906.20 . AC=7;AF=0.083;AN=84;BaseQRankSum=-11.926;DP=1832;Dels=0.00;FS=2.642;HRun=1;HaplotypeScore=1.7184;InbreedingCoeff=0.2208;MQ=56.19;MQ0=1;MQRankSum=3.152;QD=18.65;ReadPosRankSum=1.320 GT:AD:DP:GQ:PL 0/0:30,0:30:87.24:0,87,1058 0/0:27,0:28:69.22:0,69,888 0/0:29,0:30:78.19:0,78,948 0/0:81,0:82:99:0,220,2887 0/0:78,0:78:99:0,208,2680 0/0:40,0:40:99:0,99,1292 0/0:40,0:40:99:0,102,1351 0/0:40,0:40:99:0,108,1397 0/0:36,0:36:99:0,102,1279 0/0:18,0:18:42.11:0,42,490 0/0:28,0:28:75.21:0,75,896 0/0:19,0:19:51.13:0,51,624 0/0:32,0:32:81.25:0,81,1021 0/0:27,0:27:75.22:0,75,923 0/0:118,0:118:99:0,295,3680 0/0:37,0:37:99:0,105,1254 0/0:26,0:26:75.20:0,75,897 0/0:24,0:24:63.20:0,63,783 0/0:59,0:59:99:0,153,1913 0/0:89,0:90:99:0,217,2699 0/1:29,38:67:99:1002,0,743 1/1:0,40:41:99:1324,117,0 0/0:91,0:91:99:0,250,3328 0/0:46,0:46:99:0,123,1623 0/0:56,0:56:99:0,147,1965 0/0:59,0:59:99:0,156,2035 0/0:20,0:20:48.14:0,48,603 0/1:14,25:39:99:679,0,394 0/0:21,0:21:60.16:0,60,735 0/0:31,0:31:81.22:0,81,985 0/0:33,0:33:96.30:0,96,1195 0/0:81,0:81:99:0,214,2692 0/1:20,28:48:99:797,0,537 0/0:16,0:16:42.13:0,42,519 0/0:29,0:29:78.20:0,78,930 0/0:29,0:29:81.25:0,81,1001 0/0:79,0:79:99:0,199,2513 0/0:33,0:34:90.27:0,90,1097 0/0:34,0:34:90.27:0,90,1136 0/1:15,22:37:99:641,0,393 0/1:13,18:31:99:461,0,358 0/0:27,0:28:75.23:0,75,943 16 5128857 . G C 2214.18 . AC=9;AF=0.107;AN=84;BaseQRankSum=-9.202;DP=1150;Dels=0.00;FS=3.746;HRun=0;HaplotypeScore=1.1248;InbreedingCoeff=0.1283;MQ=55.25;MQ0=17;MQRankSum=2.882;QD=11.18;ReadPosRankSum=-1.648 GT:AD:DP:GQ:PL 0/0:23,0:23:66.19:0,66,784 0/0:34,0:34:87.24:0,87,1076 0/0:14,0:14:36.09:0,36,413 0/1:31,22:53:99:503,0,913 0/1:13,18:31:99:477,0,393 0/0:24,0:25:63.15:0,63,762 0/0:20,0:20:54.17:0,54,708 0/1:16,7:23:99:157,0,472 0/0:28,0:28:69.15:0,69,816 0/0:15,0:15:39.11:0,39,481 0/0:20,0:20:54.17:0,54,674 1/1:0,21:21:57.13:628,57,0 0/1:6,11:17:99:280,0,177 0/1:14,4:18:85.89:86,0,404 0/0:78,0:78:99:0,214,2658 0/0:28,0:28:72.21:0,72,877 0/0:17,0:17:51.12:0,51,606 0/0:18,0:18:45.14:0,45,567 0/0:42,0:42:99:0,108,1306 0/0:50,0:50:99:0,129,1632 0/0:39,0:39:99:0,99,1193 0/0:30,0:30:84.26:0,84,1039 0/0:53,0:53:99:0,147,1889 0/0:25,0:25:72.22:0,72,951 0/0:27,0:27:75.24:0,75,995 0/0:25,0:25:60.18:0,60,789 0/0:10,0:10:30.09:0,30,368 0/0:26,0:26:78.24:0,78,958 0/1:12,6:18:99:107,0,315 0/0:17,1:18:18.64:0,19,545 0/0:22,0:22:63.18:0,63,798 0/0:59,0:59:99:0,153,1900 0/0:23,0:23:69.22:0,69,860 0/0:16,0:16:42.13:0,42,517 0/0:26,0:26:75.22:0,75,927 0/0:20,0:20:57.17:0,57,694 0/0:42,0:43:99:0,114,1443 0/0:15,0:15:42.10:0,42,507 0/0:18,0:18:54.14:0,54,641 0/0:21,0:21:63.19:0,63,779 0/1:11,6:17:99:111,0,293 0/0:24,0:24:69.21:0,69,856 16 5145474 . C T 33909.12 . AC=23;AF=0.274;AN=84;BaseQRankSum=-41.343;DP=4740;DS;Dels=0.00;FS=6.037;HRun=0;HaplotypeScore=1.5574;InbreedingCoeff=0.1019;MQ=46.19;MQ0=39;MQRankSum=-1.674;QD=15.90;ReadPosRankSum=0.624 GT:AD:DP:GQ:PL 0/0:98,0:98:99:0,253,3134 0/0:92,0:92:99:0,226,2801 0/0:95,0:95:99:0,247,2934 0/1:82,75:157:99:1665,0,2423 0/1:69,62:131:99:1648,0,2055 0/1:69,59:128:99:1558,0,2051 0/1:65,48:113:99:1238,0,1762 0/1:61,41:103:99:1031,0,1819 0/0:98,0:98:99:0,256,3037 0/1:49,35:84:99:802,0,1369 0/0:86,2:89:99:0,158,2665 1/1:0,87:87:99:2467,211,0 0/1:52,42:94:99:1074,0,1374 0/1:43,28:71:99:671,0,1160 1/1:0,250:250:99:7717,647,0 0/1:44,30:74:99:652,0,1223 0/1:57,39:96:99:1012,0,1544 0/0:99,0:99:99:0,256,3126 0/0:196,0:196:99:0,484,6051 0/0:187,0:187:99:0,454,5912 1/1:1,126:127:99:3567,292,0 1/1:0,87:87:99:2684,232,0 0/0:168,0:168:99:0,433,5953 0/0:118,0:118:99:0,286,3854 0/0:136,0:136:99:0,340,4552 0/0:119,0:119:99:0,289,3939 0/0:67,0:68:99:0,174,2128 0/1:44,47:91:99:1172,0,1086 0/0:64,0:64:99:0,168,2043 0/0:97,0:97:99:0,250,3068 0/0:105,0:105:99:0,250,3114 0/1:95,75:171:99:1789,0,2545 0/1:57,46:103:99:1184,0,1632 0/0:106,0:106:99:0,259,3159 0/0:117,0:117:99:0,286,3506 0/0:103,0:103:99:0,265,3241 0/0:179,0:180:99:0,427,5370 0/0:95,0:95:99:0,241,2954 0/0:83,1:84:99:0,201,2714 0/1:41,44:85:99:939,0,1080 0/1:36,44:80:99:1040,0,963 0/0:94,0:94:99:0,247,2978 16 7568247 . G A 653.90 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.155;DP=5029;DS;Dels=0.00;FS=2.530;HRun=0;HaplotypeScore=4.3109;InbreedingCoeff=-0.0120;MQ=59.17;MQ0=0;MQRankSum=-0.785;QD=8.60;ReadPosRankSum=-0.774 GT:AD:DP:GQ:PL 0/0:76,0:76:99:0,220,2531 0/0:68,0:68:99:0,202,2364 0/1:49,27:76:99:700,0,1335 0/0:247,0:248:99:0,680,8377 0/0:232,0:232:99:0,638,7880 0/0:200,0:200:99:0,554,6853 0/0:172,0:172:99:0,481,5951 0/0:200,0:201:99:0,539,6712 0/0:68,0:68:99:0,186,2128 0/0:75,0:75:99:0,211,2466 0/0:62,0:62:99:0,183,2118 0/0:81,0:81:99:0,214,2500 0/0:57,0:57:99:0,156,1815 0/0:89,0:89:99:0,253,2923 0/0:247,0:247:99:0,689,8076 0/0:88,0:88:99:0,244,2856 0/0:79,0:79:99:0,226,2614 0/0:62,0:62:99:0,174,2080 0/0:175,0:177:99:0,496,5776 0/0:180,0:180:99:0,511,5922 0/0:183,0:185:99:0,499,5851 0/0:118,0:118:99:0,337,3945 0/0:250,0:250:99:0,677,8536 0/0:150,0:150:99:0,412,5096 0/0:184,0:184:99:0,502,6301 0/0:146,0:146:99:0,388,4828 0/0:66,0:66:99:0,193,2237 0/0:74,0:74:99:0,220,2497 0/0:63,0:63:99:0,184,2142 0/0:69,0:69:99:0,202,2305 0/0:83,0:83:99:0,229,2702 0/0:192,0:192:99:0,532,6311 0/0:114,0:114:99:0,322,3728 0/0:83,0:83:99:0,235,2737 0/0:63,0:63:99:0,178,2095 0/0:87,0:87:99:0,244,2845 0/0:165,0:168:99:0,460,5377 0/0:74,0:74:99:0,208,2483 0/0:97,0:97:99:0,280,3208 0/0:78,0:78:99:0,232,2726 0/0:64,0:64:99:0,189,2141 0/0:83,0:83:99:0,241,2825 16 7726809 . A C 31.09 . AC=2;AF=0.024;AN=84;BaseQRankSum=-12.527;DP=3004;Dels=0.00;FS=1130.915;HRun=4;HaplotypeScore=2.5925;InbreedingCoeff=-0.0452;MQ=58.34;MQ0=0;MQRankSum=4.595;QD=0.20;ReadPosRankSum=-14.603 GT:AD:DP:GQ:PL 0/0:37,30:67:35.83:0,36,1033 0/0:45,23:69:65.82:0,66,1325 0/0:39,27:66:49.59:0,50,1187 0/0:90,50:140:99:0,147,2713 0/1:58,53:111:69.10:69,0,1719 0/0:61,41:102:84.86:0,85,1893 0/0:57,27:84:70.42:0,70,1891 0/0:47,43:90:43.38:0,43,1353 0/0:43,7:54:99:0,120,1347 0/0:35,15:50:82.59:0,83,1167 0/0:28,18:46:0.27:12,0,812 0/0:41,20:61:99:0,120,1389 0/0:27,13:40:58.54:0,59,892 0/0:36,21:57:45.44:0,45,1086 0/0:130,55:186:99:0,195,4022 0/0:27,17:45:29.02:0,29,889 0/0:30,22:52:81.21:0,81,914 0/0:38,4:42:78.27:0,78,1109 0/0:61,30:91:99:0,118,1944 0/0:68,28:98:99:0,190,2129 0/0:46,25:71:99:0,101,1395 0/0:27,14:41:51.71:0,52,880 0/0:85,60:145:99:0,168,2670 0/0:48,42:90:73.97:0,74,1534 0/0:64,41:105:99:0,129,2009 0/0:47,30:77:27.74:0,28,1356 0/0:41,22:63:21.80:0,22,1188 0/0:30,19:49:1.59:4,0,842 0/0:28,22:51:51.61:0,52,870 0/0:40,25:66:90.39:0,90,1309 0/0:32,22:54:44.98:0,45,1016 0/0:53,22:75:65.05:0,65,1638 0/0:39,20:59:83.73:0,84,1246 0/0:32,24:56:67.64:0,68,1013 0/1:29,17:46:20.26:20,0,884 0/0:38,22:60:67.96:0,68,1267 0/0:54,21:75:82.65:0,83,1611 0/0:40,17:57:99:0,108,1230 0/0:39,13:52:99:0,102,1153 0/0:37,13:50:58.34:0,58,1218 0/0:35,23:59:78.84:0,79,1097 0/0:31,21:52:89.67:0,90,1000 16 7726809 . A AC 187.29 . 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G A 823.73 . 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T C 325803.43 . AC=84;AF=1.000;AN=84;BaseQRankSum=2.250;DP=9145;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.5678;InbreedingCoeff=0.0000;MQ=59.47;MQ0=0;MQRankSum=1.373;QD=35.63;ReadPosRankSum=0.959 GT:AD:DP:GQ:PL 1/1:0,240:240:99:8351,671,0 1/1:0,220:220:99:7697,617,0 1/1:0,215:215:99:7518,605,0 1/1:0,217:217:99:8014,629,0 1/1:0,213:214:99:8157,629,0 1/1:1,207:208:99:7745,578,0 1/1:0,228:229:99:8617,656,0 1/1:0,210:210:99:7770,596,0 1/1:0,206:206:99:7345,587,0 1/1:1,209:211:99:7392,556,0 1/1:0,209:209:99:7292,584,0 1/1:0,217:217:99:7528,599,0 1/1:0,209:209:99:7428,599,0 1/1:0,223:223:99:7867,629,0 1/1:1,249:250:99:8623,713,0 1/1:0,221:221:99:7870,638,0 1/1:0,228:229:99:8055,647,0 1/1:0,208:209:99:7558,608,0 1/1:0,201:202:99:7176,575,0 1/1:0,216:216:99:7456,608,0 1/1:0,197:197:99:7066,566,0 1/1:0,234:235:99:8153,668,0 1/1:0,239:240:99:9093,695,0 1/1:0,206:206:99:7841,599,0 1/1:0,230:230:99:8703,671,0 1/1:0,223:223:99:8164,629,0 1/1:0,189:190:99:6665,533,0 1/1:0,227:228:99:7818,632,0 1/1:0,229:229:99:7999,641,0 1/1:0,217:217:99:7701,623,0 1/1:0,210:210:99:7349,590,0 1/1:0,201:201:99:7000,566,0 1/1:0,230:230:99:8010,644,0 1/1:0,229:229:99:8052,647,0 1/1:0,229:229:99:8072,653,0 1/1:0,226:226:99:7778,635,0 1/1:0,211:212:99:7673,623,0 1/1:0,218:218:99:7675,611,0 1/1:0,225:225:99:7868,638,0 1/1:0,215:215:99:7654,611,0 1/1:0,200:200:99:7039,572,0 1/1:0,200:200:99:6972,563,0 16 8738499 . G A 206096.63 . AC=84;AF=1.000;AN=84;BaseQRankSum=3.837;DP=6115;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.0428;InbreedingCoeff=0.0000;MQ=59.02;MQ0=0;MQRankSum=0.188;QD=33.70;ReadPosRankSum=0.875 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3953,337,0 1/1:0,121:121:99:4078,352,0 1/1:0,103:103:99:3379,289,0 1/1:0,188:188:99:6363,551,0 1/1:0,198:198:99:6830,581,0 1/1:1,181:183:99:6243,505,0 1/1:0,196:196:99:6679,563,0 1/1:1,177:180:99:6009,511,0 1/1:0,131:131:99:4449,385,0 1/1:0,100:101:99:3350,295,0 1/1:0,122:122:99:4111,355,0 1/1:0,110:110:99:3740,325,0 1/1:0,83:84:99:2831,247,0 1/1:0,120:120:99:4053,346,0 1/1:2,241:244:99:8062,710,0 1/1:0,135:136:99:4618,406,0 1/1:0,132:132:99:4441,385,0 1/1:0,113:114:99:3880,337,0 1/1:0,181:183:99:6175,529,0 1/1:0,190:190:99:6265,536,0 1/1:0,203:203:99:6557,563,0 1/1:0,162:162:99:5546,481,0 1/1:0,188:188:99:6420,548,0 1/1:0,156:156:99:5305,448,0 1/1:0,181:182:99:6109,520,0 1/1:0,169:169:99:5698,490,0 1/1:0,118:118:99:4013,346,0 1/1:0,112:112:99:3829,331,0 1/1:1,115:116:99:3842,331,0 1/1:0,129:129:99:4276,364,0 1/1:0,133:133:99:4577,391,0 1/1:0,178:178:99:6067,521,0 1/1:0,140:140:99:4748,406,0 1/1:0,128:128:99:4365,373,0 1/1:0,122:122:99:4265,364,0 1/1:0,143:143:99:4924,427,0 1/1:1,185:187:99:6120,508,0 1/1:1,118:119:99:3924,343,0 1/1:0,122:122:99:4166,358,0 1/1:0,121:122:99:4128,355,0 1/1:0,119:120:99:3887,337,0 1/1:0,111:112:99:3819,328,0 16 8738579 . A G 74749.63 . AC=84;AF=1.000;AN=84;BaseQRankSum=1.729;DP=2100;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.2033;InbreedingCoeff=-0.0000;MQ=57.74;MQ0=0;MQRankSum=0.041;QD=35.60;ReadPosRankSum=1.696 GT:AD:DP:GQ:PL 1/1:0,32:32:90.28:1128,90,0 1/1:0,39:39:99:1357,111,0 1/1:0,37:37:99:1347,108,0 1/1:0,60:60:99:2140,163,0 1/1:0,73:73:99:2803,211,0 1/1:0,51:52:99:1848,141,0 1/1:0,63:63:99:2402,187,0 1/1:0,56:56:99:2062,157,0 1/1:0,41:41:99:1441,117,0 1/1:0,32:32:90.24:1104,90,0 1/1:0,35:36:99:1264,102,0 1/1:0,33:33:99:1240,99,0 1/1:0,33:33:99:1239,99,0 1/1:0,43:43:99:1516,123,0 1/1:0,112:113:99:3868,310,0 1/1:0,57:57:99:2090,166,0 1/1:0,41:41:99:1487,120,0 1/1:0,37:37:99:1321,108,0 1/1:0,65:65:99:2315,190,0 1/1:0,69:70:99:2378,193,0 1/1:1,55:56:99:1834,153,0 1/1:0,56:56:99:1951,156,0 1/1:0,68:68:99:2683,202,0 1/1:0,40:40:99:1526,117,0 1/1:0,49:49:99:1856,141,0 1/1:0,25:25:72.23:961,72,0 1/1:0,43:43:99:1453,117,0 1/1:0,51:51:99:1890,153,0 1/1:0,45:45:99:1578,129,0 1/1:0,43:43:99:1471,120,0 1/1:0,57:57:99:2025,165,0 1/1:0,64:64:99:2216,181,0 1/1:0,34:34:99:1238,99,0 1/1:0,52:52:99:1767,144,0 1/1:0,65:66:99:2225,178,0 1/1:0,45:45:99:1579,129,0 1/1:0,63:65:99:2116,177,0 1/1:0,42:42:99:1482,120,0 1/1:0,70:70:99:2538,205,0 1/1:0,41:41:99:1453,117,0 1/1:0,39:39:99:1368,111,0 1/1:0,35:36:96.28:1189,96,0 16 8900241 . G A 3456.79 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.377;DP=2996;Dels=0.00;FS=2.074;HRun=4;HaplotypeScore=1.0611;InbreedingCoeff=-0.0244;MQ=59.47;MQ0=0;MQRankSum=1.500;QD=14.17;ReadPosRankSum=2.491 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,150,1901 0/0:55,0:55:99:0,153,1846 0/0:55,0:55:99:0,150,1868 0/0:158,0:158:99:0,427,5611 0/0:115,0:115:99:0,313,4114 0/1:69,57:126:99:1742,0,2012 0/0:101,0:101:99:0,250,3352 0/1:54,64:118:99:1715,0,1632 0/0:62,1:63:99:0,138,2103 0/0:53,0:53:99:0,147,1804 0/0:49,0:49:99:0,138,1700 0/0:57,0:57:99:0,159,1961 0/0:45,0:45:99:0,123,1520 0/0:50,0:50:99:0,141,1746 0/0:192,0:192:99:0,499,6176 0/0:30,0:30:87.26:0,87,1057 0/0:65,0:66:99:0,184,2262 0/0:63,0:63:99:0,165,1985 0/0:67,0:67:99:0,159,2000 0/0:53,0:53:99:0,135,1708 0/0:57,0:57:99:0,150,1876 0/0:38,0:38:99:0,99,1244 0/0:148,0:148:99:0,355,4831 0/0:100,0:100:99:0,265,3498 0/0:113,0:113:99:0,298,3947 0/0:120,0:121:99:0,316,4187 0/0:41,0:41:99:0,102,1269 0/0:64,0:64:99:0,175,2118 0/0:54,0:54:99:0,138,1725 0/0:53,0:53:99:0,147,1787 0/0:52,0:52:99:0,138,1711 0/0:47,0:47:99:0,123,1530 0/0:51,0:51:99:0,138,1716 0/0:49,0:49:99:0,135,1668 0/0:53,0:53:99:0,144,1814 0/0:54,0:54:99:0,147,1823 0/0:33,0:33:90.26:0,90,1094 0/0:66,0:66:99:0,172,2127 0/0:43,0:43:99:0,129,1567 0/0:79,0:79:99:0,220,2691 0/0:55,0:55:99:0,147,1795 0/0:50,0:50:99:0,135,1664 16 8988692 . C G 9927.42 . 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A G 2046.75 . 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G C 29.31 . 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CAGCGGCAGCGGGAGCA C 604.75 . AC=9;AF=0.107;AN=84;BaseQRankSum=10.076;DP=1151;FS=213.115;HRun=0;HaplotypeScore=319.7352;InbreedingCoeff=-0.1228;MQ=58.54;MQ0=0;MQRankSum=6.381;QD=2.14;ReadPosRankSum=-12.545 GT:AD:DP:GQ:PL 0/0:13,0:13:36.11:0,36,1190 0/0:20,0:20:60.19:0,60,2789 0/0:22,0:22:60.20:0,60,2724 0/1:51,11:62:92.42:92,0,6847 0/0:59,0:59:99:0,162,7537 0/0:46,0:45:99:0,135,6268 0/1:28,10:37:99:126,0,4058 0/0:32,0:31:6.34:0,6,3553 0/0:13,0:13:36.11:0,36,1709 0/0:14,0:14:42.14:0,42,1662 0/0:15,0:15:45.15:0,45,2253 0/0:16,0:16:48.16:0,48,2507 0/1:13,5:18:37.05:37,0,1444 0/0:25,0:25:72.25:0,72,3415 0/0:69,0:69:99:0,199,9210 0/0:17,0:17:45.15:0,45,2407 0/0:15,0:15:29.72:0,30,2402 0/1:21,6:27:30.05:30,0,2489 0/0:26,0:26:72.22:0,72,3317 0/0:54,0:54:99:0,137,7565 0/0:29,0:29:84.27:0,84,3535 0/1:19,13:32:99:181,0,3044 0/0:51,0:51:99:0,116,6492 0/0:33,0:29:84.33:0,84,4664 0/0:35,0:32:99:0,102,4645 0/0:33,0:29:96.28:0,96,3949 0/0:12,0:12:36.11:0,36,1334 0/0:11,0:11:33.11:0,33,1590 0/1:13,6:19:99:102,0,1764 0/0:20,0:20:57.19:0,57,2645 0/0:22,0:22:63.22:0,63,3112 0/1:38,10:48:57.77:58,0,5628 0/0:32,0:32:86.33:0,86,4571 0/0:19,0:19:51.08:0,51,2426 0/0:16,0:16:48.16:0,48,2129 0/0:16,0:16:48.05:0,48,1914 0/0:36,0:36:99:0,99,4180 0/0:14,0:14:42.13:0,42,2191 0/0:21,0:21:41.21:0,41,2636 0/0:13,0:13:33.11:0,33,1507 0/1:8,4:12:78.72:79,0,1183 0/1:19,7:26:36.52:37,0,2777 16 11374866 . G T 145337.93 . AC=56;AF=0.667;AN=84;BaseQRankSum=-12.014;DP=7235;DS;Dels=0.00;FS=36.769;HRun=0;HaplotypeScore=3.8238;InbreedingCoeff=-0.1786;MQ=59.19;MQ0=2;MQRankSum=-0.090;QD=21.73;ReadPosRankSum=-0.645 GT:AD:DP:GQ:PL 1/1:0,162:162:99:5496,454,0 0/1:94,66:161:99:1783,0,2785 0/0:171,2:173:99:0,393,5385 0/1:96,67:163:99:1896,0,3183 0/1:101,88:189:99:2611,0,3179 0/1:109,88:197:99:2570,0,3294 0/1:102,87:189:99:2516,0,3058 0/1:106,96:202:99:2702,0,2966 1/1:0,152:153:99:4978,415,0 1/1:1,133:134:99:4526,343,0 0/1:90,86:176:99:2458,0,2537 0/1:80,93:173:99:2687,0,2018 1/1:1,137:138:99:4622,355,0 0/1:85,82:167:99:2298,0,2388 0/1:124,72:196:99:1904,0,3706 1/1:0,159:159:99:5342,439,0 0/1:94,82:177:99:2291,0,2734 1/1:0,154:154:99:5223,433,0 0/1:101,61:163:99:1552,0,2824 0/1:111,81:193:99:2179,0,3053 1/1:0,173:174:99:5931,496,0 1/1:1,204:205:99:6903,572,0 1/1:0,169:169:99:5959,481,0 1/1:0,184:184:99:6453,521,0 1/1:1,174:175:99:5944,451,0 0/1:101,75:176:99:2059,0,3122 0/1:79,59:138:99:1679,0,2230 0/1:86,76:162:99:2256,0,2444 1/1:0,135:135:99:4569,373,0 0/1:89,91:181:99:2496,0,2585 0/1:80,84:164:99:2552,0,2071 1/1:0,205:205:99:6892,560,0 1/1:1,203:204:99:6766,524,0 1/1:0,154:154:99:5273,430,0 0/1:80,90:170:99:2583,0,2281 1/1:1,145:146:99:4957,382,0 0/1:106,78:185:99:2148,0,3090 0/1:90,77:167:99:2162,0,2459 1/1:1,173:174:99:5929,484,0 0/0:212,0:212:99:0,590,7059 0/1:93,80:173:99:2191,0,2571 0/0:163,0:163:99:0,454,5464 16 11781741 . G C 135.53 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.674;DP=1286;Dels=0.00;FS=1.563;HRun=0;HaplotypeScore=0.8135;InbreedingCoeff=-0.0120;MQ=59.23;MQ0=0;MQRankSum=0.952;QD=5.42;ReadPosRankSum=-1.518 GT:AD:DP:GQ:PL 0/0:19,0:19:51.17:0,51,667 0/0:17,0:17:51.13:0,51,625 0/1:17,8:25:99:182,0,580 0/0:55,0:55:99:0,157,2108 0/0:44,0:44:99:0,114,1573 0/0:38,0:38:99:0,105,1381 0/0:41,0:41:96.32:0,96,1337 0/0:37,0:37:99:0,99,1356 0/0:29,0:29:78.24:0,78,999 0/0:25,0:25:69.22:0,69,893 0/0:25,0:25:69.22:0,69,900 0/0:23,0:23:66.20:0,66,833 0/0:26,0:26:66.21:0,66,859 0/0:23,0:23:60.19:0,60,783 0/0:91,0:91:99:0,253,3221 0/0:29,0:29:84.27:0,84,1085 0/0:32,0:32:93.28:0,93,1140 0/0:28,0:28:78.25:0,78,1010 0/0:31,0:31:90.26:0,90,1116 0/0:32,0:32:75.24:0,75,991 0/0:22,0:22:63.20:0,63,795 0/0:19,0:19:51.16:0,51,654 0/0:44,0:44:99:0,123,1669 0/0:39,0:39:96.31:0,96,1308 0/0:40,0:40:99:0,108,1488 0/0:25,0:25:69.22:0,69,936 0/0:15,0:15:45.13:0,45,562 0/0:25,0:25:75.24:0,75,955 0/0:22,0:22:57.18:0,57,746 0/0:22,0:22:60.19:0,60,764 0/0:27,0:27:81.26:0,81,1034 0/0:41,0:41:99:0,108,1401 0/0:28,0:28:75.24:0,75,972 0/0:19,0:19:57.18:0,57,725 0/0:29,0:29:78.25:0,78,995 0/0:28,0:28:78.25:0,78,1007 0/0:39,0:39:99:0,102,1339 0/0:25,0:25:69.20:0,69,850 0/0:28,0:28:81.26:0,81,1037 0/0:26,0:26:69.22:0,69,899 0/0:29,0:29:87.27:0,87,1089 0/0:24,0:24:72.23:0,72,921 16 11781784 . G A 5.75 . AC=1;AF=0.012;AN=84;BaseQRankSum=-10.357;DP=1400;Dels=0.00;FS=63.457;HRun=2;HaplotypeScore=0.8494;InbreedingCoeff=-0.0198;MQ=59.18;MQ0=0;MQRankSum=-0.794;QD=0.22;ReadPosRankSum=-4.613 GT:AD:DP:GQ:PL 0/0:24,1:25:57.08:0,57,642 0/0:21,3:24:51.14:0,51,610 0/0:18,3:21:42:0,42,492 0/0:61,4:65:99:0,120,1514 0/0:42,4:46:80.57:0,81,1158 0/0:31,1:32:69.19:0,69,843 0/0:37,1:38:59.51:0,60,934 0/0:43,2:45:93.26:0,93,1175 0/0:31,1:33:75.22:0,75,923 0/0:23,2:25:3.78:0,4,559 0/0:30,3:33:63.18:0,63,766 0/0:26,1:27:57.12:0,57,655 0/0:21,3:24:20.43:0,20,491 0/0:24,2:27:57.08:0,57,617 0/0:86,15:102:99:0,105,2362 0/0:24,5:29:60.12:0,60,691 0/0:30,6:36:20.80:0,21,694 0/0:19,6:25:25.44:0,25,524 0/0:31,4:35:11.28:0,11,756 0/0:31,3:34:70.88:0,71,804 0/1:19,7:26:50.52:51,0,420 0/0:22,3:26:51.14:0,51,599 0/0:48,1:49:99:0,114,1417 0/0:42,3:45:58.52:0,59,965 0/0:41,2:43:90.22:0,90,1124 0/0:24,2:26:40.46:0,40,702 0/0:15,1:16:5.49:0,5,337 0/0:30,1:31:60.15:0,60,694 0/0:18,2:20:48.05:0,48,549 0/0:23,4:27:36.08:0,36,410 0/0:20,3:23:48.13:0,48,570 0/0:49,3:52:99:0,129,1534 0/0:28,4:32:57.03:0,57,665 0/0:23,1:24:19.49:0,19,522 0/0:24,4:28:30.82:0,31,580 0/0:29,2:31:72.18:0,72,848 0/0:36,5:41:54.10:0,54,1005 0/0:29,4:33:39.50:0,39,736 0/0:24,1:25:44.45:0,44,745 0/0:19,4:23:54.16:0,54,648 0/0:27,2:29:38.46:0,38,676 0/0:21,3:24:19.34:0,19,438 16 11876203 . T C 12539.68 . AC=3;AF=0.036;AN=84;BaseQRankSum=26.562;DP=6683;DS;Dels=0.00;FS=39.738;HRun=0;HaplotypeScore=2.3437;InbreedingCoeff=0.6543;MQ=59.55;MQ0=0;MQRankSum=-0.154;QD=26.91;ReadPosRankSum=-0.003 GT:AD:DP:GQ:PL 0/0:130,0:130:99:0,346,4278 0/0:129,0:129:99:0,340,4238 0/0:132,0:134:99:0,367,4475 0/1:113,122:235:99:3978,0,3229 1/1:0,229:231:99:8562,620,0 0/0:239,0:240:99:0,659,8574 0/0:225,0:225:99:0,620,8006 0/0:238,0:238:99:0,635,8178 0/0:141,0:141:99:0,391,4821 0/0:107,0:107:99:0,295,3581 0/0:136,0:136:99:0,352,4395 0/0:130,0:130:99:0,334,4142 0/0:116,0:117:99:0,280,3561 0/0:114,0:114:99:0,304,3760 0/0:250,0:250:99:0,671,8260 0/0:104,0:104:99:0,277,3388 0/0:134,2:136:99:0,322,4461 0/0:114,0:114:99:0,307,3828 0/0:193,0:193:99:0,487,6126 0/0:185,2:187:99:0,434,5914 0/0:168,0:168:99:0,430,5416 0/0:124,0:124:99:0,325,4017 0/0:250,0:250:99:0,689,8914 0/0:245,0:245:99:0,638,8307 0/0:225,0:225:99:0,605,7904 0/0:249,0:249:99:0,644,8339 0/0:100,0:100:99:0,262,3262 0/0:123,0:123:99:0,328,4083 0/0:110,0:110:99:0,304,3726 0/0:109,0:110:99:0,304,3714 0/0:104,0:105:99:0,274,3410 0/0:188,0:188:99:0,475,6045 0/0:121,0:121:99:0,307,3869 0/0:136,0:136:99:0,364,4554 0/0:143,0:143:99:0,379,4722 0/0:151,0:151:99:0,397,4931 0/0:164,0:164:99:0,418,5207 0/0:120,0:120:99:0,331,4050 0/0:123,0:123:99:0,337,4190 0/0:153,0:153:99:0,400,5010 0/0:123,0:123:99:0,334,4140 0/0:161,0:161:99:0,433,5422 16 11933678 . G C 6769.81 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.447;DP=6852;DS;Dels=0.00;FS=1.998;HRun=0;HaplotypeScore=2.2474;InbreedingCoeff=-0.0244;MQ=59.49;MQ0=0;MQRankSum=0.922;QD=14.02;ReadPosRankSum=-0.567 GT:AD:DP:GQ:PL 0/0:157,0:157:99:0,427,5381 0/0:153,0:153:99:0,418,5306 0/0:125,0:125:99:0,346,4383 0/0:250,0:250:99:0,686,9097 0/0:247,0:247:99:0,683,9150 0/1:129,105:234:99:3121,0,4061 0/1:130,119:249:99:3649,0,4070 0/0:246,0:246:99:0,680,9069 0/0:151,0:151:99:0,406,5264 0/0:141,0:142:99:0,382,4848 0/0:125,0:125:99:0,340,4337 0/0:126,0:126:99:0,334,4242 0/0:119,0:119:99:0,316,4029 0/0:138,0:138:99:0,376,4820 0/0:244,0:246:99:0,689,8527 0/0:111,0:111:99:0,307,3883 0/0:161,0:161:99:0,448,5677 0/0:136,0:136:99:0,373,4729 0/0:138,0:140:99:0,361,4502 0/0:164,0:164:99:0,460,5805 0/0:173,0:173:99:0,463,5796 0/0:98,0:98:99:0,262,3315 0/0:250,0:250:99:0,695,9312 0/0:241,0:241:99:0,677,8914 0/0:247,0:247:99:0,686,9251 0/0:246,0:246:99:0,683,9027 0/0:114,0:114:99:0,310,3938 0/0:131,0:131:99:0,349,4423 0/0:117,0:117:99:0,322,4113 0/0:119,0:119:99:0,325,4141 0/0:128,0:128:99:0,361,4613 0/0:147,0:148:99:0,379,4951 0/0:119,0:119:99:0,334,4268 0/0:138,0:138:99:0,382,4812 0/0:148,0:148:99:0,406,5113 0/0:149,0:149:99:0,409,5218 0/0:175,0:176:99:0,442,5578 0/0:149,0:149:99:0,412,5163 0/0:149,0:149:99:0,412,5194 0/0:137,0:137:99:0,382,4759 0/0:123,0:123:99:0,343,4351 0/0:132,0:132:99:0,382,4794 16 11940390 . T C 110308.44 . AC=62;AF=0.738;AN=84;BaseQRankSum=2.219;DP=4323;DS;Dels=0.00;FS=3.253;HRun=1;HaplotypeScore=1.7557;InbreedingCoeff=0.1378;MQ=59.29;MQ0=0;MQRankSum=-2.135;QD=28.34;ReadPosRankSum=2.472 GT:AD:DP:GQ:PL 1/1:1,78:79:99:2744,225,0 1/1:0,90:90:99:3193,265,0 0/1:22,40:62:99:1187,0,635 0/1:68,71:139:99:2245,0,1867 0/0:151,0:151:99:0,427,5477 1/1:0,119:119:99:4322,334,0 1/1:0,113:114:99:4120,316,0 1/1:0,107:109:99:4012,310,0 1/1:0,85:85:99:3030,250,0 1/1:0,83:83:99:2882,235,0 1/1:0,76:77:99:2634,214,0 1/1:0,64:64:99:2108,172,0 0/1:29,43:72:99:1286,0,774 0/1:47,34:81:99:996,0,1483 1/1:0,249:250:99:8183,665,0 1/1:0,80:80:99:2896,235,0 1/1:0,95:95:99:3452,280,0 1/1:0,113:113:99:3815,313,0 1/1:0,137:139:99:4710,382,0 1/1:0,154:154:99:5411,442,0 0/1:56,75:135:99:2310,0,1622 0/1:44,29:73:99:746,0,1337 1/1:0,144:145:99:5236,400,0 1/1:1,117:118:99:4320,305,0 1/1:0,133:133:99:4977,385,0 1/1:0,115:115:99:4014,310,0 0/1:36,30:66:99:794,0,1136 0/1:44,41:85:99:1195,0,1365 0/0:88,0:88:99:0,253,3183 1/1:0,88:88:99:3086,253,0 0/1:40,30:70:99:844,0,1237 1/1:0,128:128:99:4582,370,0 0/1:39,41:80:99:1112,0,1205 0/1:44,55:99:99:1643,0,1308 0/0:80,1:81:99:0,193,2768 1/1:0,85:85:99:2946,244,0 0/1:65,58:125:99:1564,0,1942 0/1:58,40:99:99:1108,0,1674 1/1:0,88:88:99:3098,253,0 0/1:44,44:88:99:1329,0,1388 1/1:2,65:67:99:2181,118,0 0/0:111,0:111:99:0,316,3925 16 12060163 . A G 125481.26 . 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C T 1567.28 . 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C T 1636.43 . 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G A 132.55 . 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A G 21988.87 . 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G C 147.76 . 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C T 330.51 . 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A C 462.58 . 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A G 15187.45 . 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G T 13559.57 . AC=16;AF=0.190;AN=84;BaseQRankSum=-28.468;DP=3768;DS;Dels=0.00;FS=0.379;HRun=1;HaplotypeScore=0.9876;InbreedingCoeff=-0.0809;MQ=58.63;MQ0=2;MQRankSum=-2.723;QD=12.35;ReadPosRankSum=1.457 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,175,2204 0/0:63,0:63:99:0,181,2261 0/1:34,21:55:99:576,0,1125 0/1:67,55:122:99:1548,0,2195 0/1:88,55:143:99:1510,0,3095 0/0:143,1:144:99:0,376,5480 0/0:140,0:140:99:0,406,5521 0/0:131,0:131:99:0,367,5020 0/1:51,27:78:99:727,0,1522 0/0:65,0:65:99:0,187,2365 1/1:0,48:48:99:1666,141,0 0/1:43,25:68:99:587,0,1340 0/0:64,0:64:99:0,190,2393 0/1:21,30:51:99:883,0,603 0/0:188,0:188:99:0,527,6712 0/0:49,0:49:99:0,138,1738 0/1:42,21:63:99:549,0,1246 0/0:78,0:78:99:0,226,2866 0/0:144,1:145:99:0,403,5046 0/0:115,0:115:99:0,310,3955 0/1:59,42:101:99:1147,0,1795 0/1:16,23:39:99:643,0,476 0/0:182,1:183:99:0,491,7138 0/0:127,0:127:99:0,364,4923 0/0:153,0:153:99:0,445,6036 0/0:157,1:158:99:0,416,6057 0/0:50,0:50:99:0,147,1856 0/0:89,0:89:99:0,259,3268 0/1:22,23:45:99:644,0,704 0/1:37,28:65:99:767,0,1148 0/1:41,19:60:99:512,0,1331 0/1:53,36:90:99:949,0,1569 0/0:76,1:77:99:0,179,2617 0/0:67,0:67:99:0,199,2526 0/0:72,0:72:99:0,208,2625 0/1:40,30:70:99:853,0,1202 0/0:99,1:100:99:0,265,3392 0/0:65,0:65:99:0,178,2287 0/0:72,0:72:99:0,211,2678 0/0:61,0:61:99:0,178,2256 0/0:76,2:78:99:0,156,2716 0/0:72,0:72:99:0,199,2554 16 15178499 . G A 7455.13 . 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A G 317.97 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.792;DP=1724;Dels=0.00;FS=1.009;HRun=0;HaplotypeScore=1.0007;InbreedingCoeff=-0.0120;MQ=59.30;MQ0=0;MQRankSum=-0.528;QD=10.26;ReadPosRankSum=0.798 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,132,1609 0/0:23,0:23:69.21:0,69,822 0/0:37,0:37:96.29:0,96,1181 0/0:104,0:104:99:0,262,3290 0/0:41,0:41:99:0,102,1313 0/0:43,0:43:99:0,102,1333 0/0:41,0:41:99:0,102,1312 0/0:43,0:43:99:0,114,1425 0/0:44,0:44:99:0,117,1452 0/0:43,0:43:99:0,105,1306 0/0:21,0:21:57.17:0,57,690 0/0:31,0:31:81.25:0,81,993 0/0:36,0:36:93.29:0,93,1168 0/0:20,0:20:60.18:0,60,718 0/0:125,0:125:99:0,316,3872 0/0:23,0:23:63.19:0,63,775 0/0:23,0:23:63.19:0,63,760 0/0:28,0:28:75.23:0,75,923 0/0:48,0:48:99:0,114,1463 0/0:52,0:52:99:0,123,1566 0/0:53,0:53:99:0,132,1658 0/0:21,0:21:57.17:0,57,696 0/0:78,0:78:99:0,205,2572 0/0:43,0:43:99:0,114,1438 0/0:53,0:53:99:0,138,1729 0/0:49,0:49:99:0,126,1574 0/0:32,0:32:84.25:0,84,1034 0/0:21,0:21:54.15:0,54,661 0/0:30,0:30:84.26:0,84,1029 0/0:44,0:44:99:0,108,1338 0/0:31,0:31:78.24:0,78,985 0/0:56,0:57:99:0,132,1674 0/0:28,0:28:75.23:0,75,929 0/0:38,0:38:99:0,105,1298 0/0:43,0:43:99:0,117,1432 0/0:35,0:35:99:0,102,1221 0/0:38,0:38:96.28:0,96,1178 0/1:17,14:31:99:364,0,516 0/0:32,0:32:90.27:0,90,1079 0/0:37,0:37:99:0,102,1233 0/0:24,0:24:72.22:0,72,862 0/0:33,0:33:90.28:0,90,1101 16 15690657 . C T 523.29 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.759;DP=2358;Dels=0.00;FS=9.511;HRun=1;HaplotypeScore=1.6171;InbreedingCoeff=-0.0120;MQ=59.44;MQ0=0;MQRankSum=1.972;QD=15.86;ReadPosRankSum=0.354 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,114,1286 0/0:29,0:29:84.20:0,84,935 0/0:40,0:40:99:0,111,1220 0/0:102,0:102:99:0,292,3474 0/0:105,0:105:99:0,310,3716 0/0:116,0:116:99:0,331,3968 0/0:82,0:82:99:0,238,2753 0/0:82,0:82:99:0,241,2914 0/0:43,0:43:99:0,126,1427 0/0:35,0:35:99:0,102,1153 0/0:45,0:45:99:0,132,1402 0/0:45,0:45:99:0,129,1428 0/0:39,0:39:99:0,111,1220 0/0:48,0:48:99:0,141,1619 0/0:124,0:124:99:0,331,3665 0/0:48,0:48:99:0,138,1567 0/0:41,0:41:99:0,114,1297 0/0:55,0:55:99:0,159,1781 0/0:60,0:60:99:0,168,1896 0/0:46,0:46:99:0,117,1389 0/0:69,0:69:99:0,196,2235 0/0:41,0:41:99:0,114,1298 0/0:117,0:117:99:0,325,3972 0/0:71,0:71:99:0,211,2464 0/0:90,0:91:99:0,262,3125 0/0:78,0:78:99:0,217,2560 0/0:29,0:29:81.22:0,81,920 0/0:40,0:40:99:0,114,1322 0/0:42,0:42:99:0,120,1366 0/0:54,0:54:99:0,147,1676 0/0:26,0:26:78.21:0,78,876 0/0:64,0:64:99:0,174,2025 0/0:31,0:31:93.24:0,93,1044 0/0:27,0:27:78.19:0,78,890 0/1:14,19:33:99:570,0,338 0/0:51,0:51:99:0,144,1614 0/0:54,0:54:99:0,150,1668 0/0:54,0:54:99:0,153,1712 0/0:52,0:52:99:0,153,1720 0/0:45,0:45:99:0,129,1421 0/0:26,0:26:78.22:0,78,893 0/0:39,0:39:99:0,111,1260 16 15703400 . C CT 681.04 . AC=23;AF=0.274;AN=84;BaseQRankSum=11.960;DP=2264;FS=431.236;HRun=2;HaplotypeScore=138.0296;InbreedingCoeff=-0.3874;MQ=58.93;MQ0=0;MQRankSum=0.148;QD=0.66;ReadPosRankSum=-8.983 GT:AD:DP:GQ:PL 0/0:37,1:38:29.43:0,29,559 0/1:26,0:26:11.93:12,0,421 0/1:42,0:42:36.26:36,0,542 0/0:122,0:122:7.04:0,7,1827 0/0:109,0:109:15.09:0,15,1581 0/0:111,0:110:99:0,138,2238 0/1:89,0:89:27.59:28,0,1394 0/0:97,1:96:99:0,116,1889 0/1:42,0:42:74.18:74,0,630 0/0:46,0:46:74.49:0,74,883 0/1:37,0:37:15.89:16,0,645 0/1:38,1:39:9.50:10,0,622 0/0:45,0:45:27.30:0,27,693 0/1:40,0:40:22.23:22,0,680 0/1:130,1:131:99:182,0,1625 0/0:37,1:38:40.06:0,40,825 0/1:48,1:49:8.53:9,0,750 0/1:45,0:45:40.02:40,0,627 0/1:26,13:39:70.40:70,0,464 0/0:36,0:36:35.56:0,36,706 0/1:34,2:36:40.69:41,0,298 0/1:26,0:26:53.71:54,0,307 0/0:106,0:106:92.80:0,93,1793 0/0:86,0:86:25.17:0,25,1243 0/0:89,0:89:73.79:0,74,1354 0/0:84,0:84:99:0,99,1571 0/1:27,0:27:14.93:15,0,349 0/0:42,2:44:48.78:0,49,852 0/0:19,0:19:21.18:0,21,285 0/1:43,0:43:27.20:27,0,685 0/1:44,0:44:60.21:60,0,522 0/0:44,2:46:23.01:0,23,879 0/1:25,0:25:10.22:10,0,483 0/1:38,0:38:23.03:23,0,625 0/0:36,0:36:1.10:5,0,501 0/1:47,0:46:15.95:16,0,667 0/1:42,0:42:64.35:64,0,505 0/0:41,0:41:40.76:0,41,617 0/1:35,0:35:17.62:18,0,607 0/0:43,0:43:18.71:0,19,480 0/1:40,0:40:12.46:12,0,503 0/1:45,0:45:19.66:20,0,649 16 15703403 . C T 1778.34 . AC=32;AF=0.381;AN=84;BaseQRankSum=-15.636;DP=2215;Dels=0.00;FS=535.081;HRun=2;HaplotypeScore=2.2098;InbreedingCoeff=-0.6056;MQ=59.00;MQ0=0;MQRankSum=1.753;QD=1.20;ReadPosRankSum=-11.260 GT:AD:DP:GQ:PL 0/1:24,13:37:7.19:7,0,472 0/1:15,11:26:42.55:43,0,405 0/1:22,15:37:99:108,0,402 0/1:74,45:120:36.59:37,0,1582 0/1:69,43:112:14.37:14,0,1348 0/0:74,33:107:82:0,82,1982 0/1:53,37:90:99:124,0,1217 0/0:67,29:97:53.99:0,54,1595 0/1:26,14:40:68.02:68,0,620 0/0:33,14:47:21.79:0,22,710 0/1:24,14:38:51.25:51,0,517 0/1:27,15:42:46.21:46,0,537 0/1:25,17:42:16.77:17,0,588 0/1:26,13:39:87.84:88,0,596 0/1:72,60:132:99:236,0,1725 0/1:27,10:37:2.65:3,0,723 0/1:26,21:47:34.34:34,0,716 0/1:23,20:43:99:122,0,475 0/0:21,5:27:44.98:0,45,470 0/1:27,12:39:24.71:25,0,495 0/1:15,15:30:99:110,0,202 0/1:13,12:25:64.06:64,0,198 0/0:66,43:109:55.62:0,56,1682 0/0:50,31:81:29.01:0,29,1160 0/0:52,34:86:0.85:0,1,1134 0/0:64,19:83:99:0,123,1511 0/1:13,11:24:78.34:78,0,288 0/0:24,16:41:5.82:0,6,605 0/1:11,10:21:3.51:4,0,276 0/1:29,15:44:88.17:88,0,653 0/1:22,23:46:76.03:76,0,434 0/0:33,15:49:68.75:0,69,739 0/1:19,5:24:50.36:50,0,414 0/1:19,15:34:50.68:51,0,464 0/1:22,11:35:30.02:30,0,424 0/1:29,17:46:80.36:80,0,836 0/1:22,16:38:99:134,0,433 0/1:23,14:37:18.98:19,0,429 0/1:26,9:35:58:58,0,583 0/1:25,18:43:39.59:40,0,497 0/1:24,16:40:10.08:10,0,444 0/1:27,18:45:35.43:35,0,534 16 15711335 . G A 1094.35 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.924;DP=2257;Dels=0.00;FS=5.993;HRun=1;HaplotypeScore=1.3675;InbreedingCoeff=-0.0244;MQ=59.15;MQ0=0;MQRankSum=0.239;QD=14.79;ReadPosRankSum=-0.553 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,111,1383 0/0:34,0:34:99:0,99,1210 0/0:41,0:41:99:0,120,1527 0/0:91,1:92:99:0,222,3318 0/0:85,0:85:99:0,247,3279 0/0:70,0:70:99:0,193,2567 0/0:55,0:55:99:0,157,2098 0/0:74,0:74:99:0,214,2840 0/0:45,0:45:99:0,132,1675 0/0:37,0:37:99:0,102,1272 0/0:39,0:39:99:0,114,1439 0/0:36,0:36:99:0,102,1280 0/0:30,0:30:81.26:0,81,1034 0/0:34,0:34:99:0,99,1237 0/0:136,0:136:99:0,385,4759 0/0:43,0:43:99:0,126,1598 0/0:40,0:40:99:0,111,1393 0/0:45,0:45:99:0,129,1624 0/0:73,0:75:99:0,205,2532 0/0:85,0:85:99:0,250,3157 0/0:70,0:71:99:0,199,2500 0/0:57,0:57:99:0,160,2053 0/0:85,0:85:99:0,250,3348 0/0:65,0:65:99:0,184,2485 0/0:83,0:83:99:0,244,3257 0/0:64,0:64:99:0,172,2275 0/0:32,0:32:90.27:0,90,1105 0/0:44,0:45:99:0,129,1626 0/0:44,0:44:99:0,126,1614 0/1:19,22:41:99:664,0,566 0/1:15,18:33:99:493,0,480 0/0:76,0:76:99:0,205,2593 0/0:42,0:42:99:0,126,1565 0/0:43,0:43:99:0,126,1586 0/0:39,0:39:99:0,111,1395 0/0:44,0:44:99:0,129,1612 0/0:50,0:50:99:0,141,1722 0/0:37,0:38:99:0,108,1353 0/0:59,0:59:99:0,178,2202 0/0:37,0:37:99:0,111,1369 0/0:36,0:36:99:0,108,1361 0/0:40,0:40:99:0,120,1475 16 15785049 . C T 253.31 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.362;DP=1936;Dels=0.00;FS=12.373;HRun=0;HaplotypeScore=1.9049;InbreedingCoeff=-0.0120;MQ=58.60;MQ0=0;MQRankSum=1.065;QD=9.38;ReadPosRankSum=-0.304 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,120,1441 0/0:30,0:30:75.23:0,75,926 0/0:33,0:33:93.28:0,93,1148 0/0:124,0:124:99:0,337,4327 0/0:88,0:88:99:0,262,3425 0/0:55,0:55:99:0,147,1957 0/0:64,0:64:99:0,181,2409 0/0:62,0:62:99:0,172,2254 0/0:36,0:36:99:0,99,1229 0/0:23,0:23:63.18:0,63,747 0/0:25,0:26:69.21:0,69,849 0/0:32,0:32:87.24:0,87,1048 0/0:22,0:22:57.17:0,57,703 0/0:40,0:40:99:0,108,1306 0/0:113,0:113:99:0,310,3766 0/0:38,0:38:99:0,105,1292 0/0:29,0:29:84.24:0,84,1026 0/0:31,0:31:81.25:0,81,1006 0/0:55,0:55:99:0,159,1944 0/0:65,0:65:99:0,168,2079 0/0:63,0:63:99:0,165,2034 0/0:37,0:37:99:0,108,1304 0/0:94,0:94:99:0,259,3347 0/0:50,0:50:99:0,138,1776 0/0:64,0:64:99:0,166,2132 0/0:54,0:55:99:0,150,1999 0/0:20,0:20:54.16:0,54,657 0/0:28,0:28:81.26:0,81,1023 0/1:15,12:27:99:300,0,437 0/0:34,0:35:99:0,99,1219 0/0:35,0:35:99:0,99,1219 0/0:65,0:66:99:0,172,2168 0/0:37,0:37:99:0,105,1260 0/0:26,0:26:75.23:0,75,928 0/0:38,0:39:99:0,105,1261 0/0:28,0:28:78.22:0,78,931 0/0:55,0:55:99:0,156,1869 0/0:42,0:42:99:0,120,1493 0/0:42,0:42:99:0,111,1359 0/0:29,0:29:81.24:0,81,986 0/0:32,0:32:78.23:0,78,965 0/0:23,0:23:63.19:0,63,782 16 15793615 . C T 288.39 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.933;DP=891;Dels=0.00;FS=7.506;HRun=0;HaplotypeScore=0.4802;InbreedingCoeff=-0.0123;MQ=59.14;MQ0=0;MQRankSum=0.065;QD=18.02;ReadPosRankSum=1.487 GT:AD:DP:GQ:PL 0/0:10,0:10:30.10:0,30,377 0/0:19,0:19:51.14:0,51,616 0/0:16,0:16:45.11:0,45,513 0/0:38,0:38:99:0,102,1313 0/0:18,0:18:51.15:0,51,636 0/0:34,0:34:87.26:0,87,1118 0/1:6,10:16:99:335,0,160 0/0:19,0:19:42.13:0,42,560 0/0:11,0:12:27.08:0,27,341 0/0:10,0:10:27.07:0,27,317 0/0:20,0:20:57.16:0,57,675 0/0:21,0:21:57.16:0,57,670 0/0:11,0:11:27.07:0,27,314 0/0:26,0:26:72.17:0,72,856 0/0:49,0:49:99:0,126,1514 0/0:12,0:12:36.10:0,36,423 0/0:20,0:20:57.17:0,57,701 0/0:14,0:14:39.12:0,39,477 0/0:23,0:23:63.18:0,63,730 0/0:41,0:41:99:0,108,1368 0/0:46,0:46:99:0,123,1442 0/0:23,0:23:60.19:0,60,757 0/0:32,0:32:81.26:0,81,1068 0/0:10,0:11:27.08:0,27,339 0/0:20,0:20:54.17:0,54,702 0/0:10,0:10:30.09:0,30,378 0/0:10,0:10:27.06:0,27,318 0/0:21,0:22:57.14:0,57,652 0/0:8,0:8:24.06:0,24,276 0/0:15,0:15:42.12:0,42,511 0/0:17,0:17:39.10:0,39,472 0/0:38,0:38:99:0,99,1185 0/0:28,0:28:63.15:0,63,750 0/0:15,0:15:42.11:0,42,483 0/0:18,0:18:48.14:0,48,574 0/0:25,0:25:72.21:0,72,870 0/0:33,0:33:93.24:0,93,1090 0/0:13,0:13:39.11:0,39,459 0/0:15,0:15:39.12:0,39,494 0/0:20,0:20:54.14:0,54,627 0/0:14,0:14:39.12:0,39,472 0/0:29,0:29:69.20:0,69,868 16 15793637 . G A 446.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.919;DP=965;Dels=0.00;FS=4.184;HRun=0;HaplotypeScore=0.5982;InbreedingCoeff=-0.0246;MQ=59.09;MQ0=0;MQRankSum=-0.281;QD=6.88;ReadPosRankSum=0.956 GT:AD:DP:GQ:PL 0/0:14,0:14:33.08:0,33,363 0/0:15,0:15:42.11:0,42,473 0/0:19,0:19:51.12:0,51,549 0/0:49,0:49:99:0,126,1530 0/0:17,0:18:45.11:0,45,548 0/0:28,0:28:69.21:0,69,859 0/0:27,0:27:57.18:0,57,748 0/0:19,0:19:51.16:0,51,647 0/0:17,0:17:42.10:0,42,468 0/0:16,0:16:48.13:0,48,534 0/0:20,0:20:60.16:0,60,683 0/0:13,0:13:36.09:0,36,404 0/0:12,0:12:33.09:0,33,385 0/0:23,0:23:57.14:0,57,657 0/0:66,0:66:99:0,162,1921 0/0:8,0:8:24.07:0,24,268 0/0:24,0:24:69.17:0,69,766 0/0:13,0:13:36.10:0,36,411 0/0:32,0:32:75.20:0,75,872 0/0:50,0:50:99:0,114,1340 0/1:27,14:41:99:337,0,623 0/1:16,8:24:99:172,0,403 0/0:35,0:35:87.28:0,87,1127 0/0:13,0:13:39.11:0,39,474 0/0:19,0:19:51.15:0,51,624 0/0:14,0:14:36.11:0,36,435 0/0:13,0:13:30.09:0,30,379 0/0:28,0:28:69.19:0,69,812 0/0:7,0:7:21.04:0,21,236 0/0:15,0:15:39.10:0,39,446 0/0:17,0:17:45.13:0,45,542 0/0:34,0:34:90.27:0,90,1107 0/0:28,0:28:81.20:0,81,929 0/0:13,0:13:39.11:0,39,458 0/0:17,0:17:48.13:0,48,548 0/0:21,0:21:54.13:0,54,607 0/0:33,0:33:81.20:0,81,922 0/0:17,0:17:39.10:0,39,451 0/0:20,0:20:51.13:0,51,590 0/0:18,0:18:42.11:0,42,480 0/0:22,0:22:60.16:0,60,679 0/0:33,0:33:87.23:0,87,1033 16 15850204 . A G 11076.27 . AC=38;AF=0.452;AN=84;BaseQRankSum=-9.052;DP=1176;Dels=0.00;FS=17.079;HRun=1;HaplotypeScore=3.5130;InbreedingCoeff=-0.3467;MQ=57.94;MQ0=0;MQRankSum=-1.396;QD=12.42;ReadPosRankSum=0.835 GT:AD:DP:GQ:PL 0/0:33,0:33:81.22:0,81,972 0/0:22,1:25:60.16:0,60,714 0/0:20,0:21:48.15:0,48,590 0/1:17,21:43:99:527,0,456 0/1:15,14:31:99:181,0,497 0/1:18,14:33:99:254,0,521 1/1:0,18:20:36.08:420,36,0 0/1:12,9:21:99:188,0,389 1/1:0,24:24:57.14:666,57,0 0/1:17,10:27:99:192,0,497 0/1:10,14:24:99:175,0,233 0/1:13,14:28:99:267,0,297 0/1:11,12:24:99:219,0,301 0/1:13,11:25:99:306,0,252 0/0:82,0:85:99:0,202,2450 0/1:10,9:20:99:212,0,278 0/1:15,18:34:99:480,0,353 0/1:10,7:17:99:160,0,252 1/1:0,29:33:75.18:835,75,0 0/1:14,22:38:99:444,0,354 1/1:1,32:34:45.95:858,46,0 0/1:10,10:20:99:234,0,237 0/1:21,17:40:99:429,0,560 0/0:20,0:20:54.14:0,54,656 0/0:18,0:18:45.12:0,45,546 0/1:7,9:16:99:144,0,194 0/1:6,7:14:99:160,0,175 0/1:4,8:12:84.68:181,0,85 0/1:7,14:24:99:339,0,171 0/1:17,11:33:99:264,0,513 1/1:0,25:28:66.17:755,66,0 0/1:19,18:37:99:456,0,377 0/1:15,16:33:99:293,0,362 0/1:16,15:32:99:297,0,436 0/1:15,14:29:99:299,0,407 0/1:13,14:29:99:362,0,346 0/0:30,0:31:87.27:0,87,1067 0/0:27,1:30:15.59:0,16,600 0/1:12,8:22:61.79:62,0,322 0/1:17,10:28:99:197,0,417 0/1:8,10:19:99:223,0,178 0/0:21,0:21:48.15:0,48,594 16 15850215 . T C 676.33 . 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G A 12626.38 . 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G A 481.80 . 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T C 17296.87 . 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G T 8919.05 . 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A T 1881.81 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.202;DP=3426;Dels=0.00;FS=2.811;HRun=1;HaplotypeScore=2.5664;InbreedingCoeff=-0.0244;MQ=59.44;MQ0=0;MQRankSum=0.645;QD=14.59;ReadPosRankSum=0.102 GT:AD:DP:GQ:PL 0/0:63,0:63:99:0,169,2070 0/0:65,0:65:99:0,175,2143 0/0:60,0:60:99:0,166,2027 0/0:173,0:173:99:0,457,5798 0/0:143,0:143:99:0,364,4668 0/0:120,0:120:99:0,298,3817 0/0:85,0:86:99:0,223,2871 0/0:113,0:113:99:0,274,3503 0/0:74,0:74:99:0,199,2425 0/0:71,0:71:99:0,190,2333 0/0:56,0:56:99:0,169,2019 0/0:43,0:43:99:0,126,1544 0/0:55,0:55:99:0,162,1978 0/0:63,0:63:99:0,175,2115 0/0:242,0:243:99:0,611,7585 0/0:48,0:48:99:0,132,1577 0/0:65,0:65:99:0,175,2139 0/1:29,27:56:99:762,0,770 0/1:33,40:73:99:1182,0,901 0/0:97,0:97:99:0,250,3157 0/0:83,0:83:99:0,235,2860 0/0:67,0:67:99:0,181,2198 0/0:171,0:171:99:0,442,5635 0/0:97,0:98:99:0,247,3176 0/0:105,0:105:99:0,277,3521 0/0:99,0:99:99:0,265,3369 0/0:53,0:53:99:0,147,1810 0/0:70,0:70:99:0,205,2468 0/0:55,0:55:99:0,150,1845 0/0:67,0:67:99:0,184,2255 0/0:61,0:61:99:0,169,2055 0/0:90,0:90:99:0,220,2816 0/0:57,0:57:99:0,159,1929 0/0:65,0:65:99:0,184,2241 0/0:50,0:50:99:0,144,1760 0/0:68,0:68:99:0,190,2289 0/0:86,0:86:99:0,217,2681 0/0:76,0:76:99:0,196,2412 0/0:65,0:66:99:0,184,2219 0/0:59,0:59:99:0,171,2072 0/0:51,0:51:99:0,138,1691 0/0:61,0:61:99:0,175,2123 16 16251599 . C T 4162.72 . AC=13;AF=0.155;AN=84;BaseQRankSum=3.474;DP=1550;Dels=0.00;FS=2.699;HRun=0;HaplotypeScore=1.1976;InbreedingCoeff=-0.0011;MQ=59.35;MQ0=0;MQRankSum=0.299;QD=13.05;ReadPosRankSum=0.269 GT:AD:DP:GQ:PL 0/0:25,0:25:69.19:0,69,815 0/1:15,10:25:99:217,0,357 0/1:15,8:23:99:201,0,414 0/0:93,0:93:99:0,247,3123 0/1:28,21:49:99:659,0,825 0/0:60,0:60:99:0,147,1895 0/0:39,0:39:99:0,105,1366 0/0:64,0:64:99:0,172,2173 0/0:19,0:19:51.12:0,51,573 0/0:30,0:30:72.17:0,72,827 0/0:27,0:27:78.21:0,78,883 0/1:9,6:15:99:185,0,204 1/1:0,13:13:39.11:463,39,0 0/0:24,0:24:60.17:0,60,733 0/0:112,0:112:99:0,283,3345 0/0:24,0:24:72.20:0,72,826 0/1:23,13:36:99:353,0,627 0/0:23,0:23:63.16:0,63,731 0/0:54,0:54:99:0,150,1716 0/0:46,0:46:99:0,123,1461 0/0:42,0:42:99:0,117,1350 0/0:28,1:29:41.76:0,42,842 0/0:86,0:86:99:0,235,3004 0/0:45,0:45:99:0,123,1562 0/0:61,0:61:99:0,168,2124 0/0:58,0:58:99:0,147,1906 0/1:9,16:25:99:521,0,219 0/1:9,10:19:99:284,0,226 0/0:20,0:20:48.13:0,48,568 0/0:36,0:36:99:0,102,1174 0/0:21,0:21:63.16:0,63,737 0/1:29,21:50:99:574,0,641 0/0:31,0:31:81.21:0,81,941 0/1:11,12:23:99:357,0,271 0/1:10,7:17:99:198,0,309 0/0:25,0:25:75.19:0,75,863 0/0:35,0:35:99:0,99,1095 0/0:24,0:24:66.18:0,66,764 0/1:18,6:24:99:151,0,520 0/0:20,0:20:45.12:0,45,519 0/0:30,0:30:84.22:0,84,972 0/0:28,0:28:81.21:0,81,944 16 16302586 . T C 4485.50 . 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C T 85.66 . AC=4;AF=0.049;AN=82;BaseQRankSum=-0.328;DP=2614;Dels=0.00;FS=33.524;HRun=0;HaplotypeScore=0.1641;InbreedingCoeff=0.3597;MQ=7.84;MQ0=2170;MQRankSum=-2.413;QD=0.64;ReadPosRankSum=-1.462 GT:AD:DP:GQ:PL 0/0:62,0:62:30.01:0,30,267 0/0:48,0:48:18.02:0,18,171 0/0:44,0:44:6:0,6,53 0/0:168,0:168:18:0,18,157 0/0:105,0:105:12:0,12,107 0/0:79,0:79:21.01:0,21,187 0/0:73,0:73:24.01:0,24,213 0/0:81,0:81:6:0,6,53 0/0:54,0:54:12:0,12,107 0/0:43,0:43:9:0,9,80 0/1:27,13:40:38.29:38,0,89 1/1:35,11:46:9:80,9,0 0/1:24,24:48:0.97:53,6,0 0/0:46,0:46:9.01:0,9,87 0/0:156,0:156:33.02:0,33,304 0/0:45,0:45:12.01:0,12,110 0/0:35,0:35:9.01:0,9,85 0/0:50,0:50:6:0,6,53 0/0:60,0:60:15.01:0,15,145 0/0:81,0:82:18:0,18,159 0/0:65,0:65:24.01:0,24,213 0/0:53,0:53:24.01:0,24,213 0/0:156,0:156:36.01:0,36,320 0/0:56,0:56:12:0,12,107 0/0:85,0:85:15:0,15,133 0/0:70,2:72:12:0,12,107 ./. 0/0:48,0:48:18.01:0,18,160 0/0:22,8:30:9:0,9,80 0/0:42,0:42:6:0,6,53 0/0:38,0:38:12.01:0,12,113 0/0:68,0:68:15.01:0,15,139 0/0:52,0:52:24.01:0,24,213 0/0:52,0:52:15:0,15,133 0/0:48,0:48:21:0,21,186 0/0:59,0:59:15:0,15,133 0/0:31,14:45:6:0,6,53 0/0:59,0:59:15.01:0,15,139 0/0:45,11:57:0.55:9,0,114 0/0:37,0:37:15:0,15,132 0/0:40,0:40:9:0,9,80 0/0:51,0:51:6:0,6,53 16 16349588 . C T 506.04 . AC=1;AF=0.012;AN=82;BaseQRankSum=0.818;DP=4247;DS;Dels=0.00;FS=2.031;HRun=0;HaplotypeScore=0.7694;InbreedingCoeff=-0.0123;MQ=25.32;MQ0=2296;MQRankSum=-0.594;QD=4.29;ReadPosRankSum=-0.099 GT:AD:DP:GQ:PL 0/0:89,0:89:99:0,117,1371 0/0:72,0:72:93.28:0,93,1120 0/0:87,0:87:99:0,105,1279 0/0:228,0:228:99:0,241,3118 0/0:137,0:140:99:0,187,2366 0/0:122,0:122:99:0,147,1934 0/0:99,0:99:99:0,117,1514 0/1:88,30:118:99:552,0,640 0/0:78,0:78:96.22:0,96,1115 0/0:74,0:74:63.17:0,63,755 0/0:81,0:81:99:0,105,1197 0/0:86,0:86:75.18:0,75,892 0/0:77,1:78:84.24:0,84,1045 0/0:77,0:77:84.25:0,84,1020 0/0:249,0:250:99:0,388,4716 0/0:89,0:89:99:0,102,1195 0/0:87,0:87:81.21:0,81,944 0/0:81,0:81:99:0,120,1458 0/0:128,0:129:99:0,150,1806 0/0:135,0:135:99:0,183,2226 0/0:125,0:125:99:0,150,1821 0/0:92,0:92:99:0,117,1417 0/0:198,0:198:99:0,208,2695 0/0:101,0:101:99:0,135,1738 0/0:121,0:121:99:0,141,1848 0/0:89,0:90:99:0,126,1620 0/0:58,0:58:93.23:0,93,1083 0/0:86,0:86:99:0,99,1185 0/0:54,0:54:69.20:0,69,833 0/0:74,0:74:66.18:0,66,778 0/0:77,0:77:99:0,108,1318 0/0:128,0:128:99:0,181,2236 0/0:122,0:122:99:0,141,1708 0/0:95,0:95:99:0,123,1455 0/0:69,0:69:93.24:0,93,1072 0/0:83,0:83:90.26:0,90,1105 0/0:116,0:116:99:0,150,1774 0/0:93,0:94:99:0,114,1378 0/0:84,0:84:99:0,99,1206 0/0:64,0:64:51.12:0,51,581 ./. 0/0:79,0:79:99:0,105,1238 16 16357011 . T C 1289.32 . AC=3;AF=0.036;AN=84;BaseQRankSum=7.510;DP=9208;DS;Dels=0.00;FS=116.266;HRun=2;HaplotypeScore=3.5585;InbreedingCoeff=-0.0371;MQ=35.30;MQ0=63;MQRankSum=4.275;QD=2.05;ReadPosRankSum=0.600 GT:AD:DP:GQ:PL 0/0:232,7:240:99:0,649,6584 0/0:242,0:242:99:0,670,6744 0/0:209,0:210:99:0,577,5911 0/1:202,40:242:99:123,0,5229 0/0:250,0:250:99:0,724,7430 0/0:250,0:250:99:0,703,7300 0/0:250,0:250:99:0,706,7274 0/0:249,0:249:99:0,700,7303 0/0:217,0:217:99:0,601,6082 0/0:117,2:120:99:0,325,3332 0/0:193,0:193:99:0,547,5644 0/0:226,0:226:99:0,634,6442 0/0:186,0:186:99:0,514,5213 0/0:226,0:226:99:0,637,6519 0/0:249,0:249:99:0,712,7413 0/0:186,0:186:99:0,529,5437 0/0:236,0:236:99:0,673,6714 0/0:205,1:206:99:0,580,5895 0/0:249,0:250:99:0,670,6804 0/0:249,0:249:99:0,694,7187 0/0:250,0:250:99:0,634,6627 0/0:205,0:205:99:0,574,5743 0/1:178,67:245:99:889,0,4669 0/0:250,0:250:99:0,691,7237 0/0:250,0:250:99:0,703,7263 0/0:250,0:250:99:0,706,7277 0/0:193,0:193:99:0,526,5481 0/0:220,0:220:99:0,634,6364 0/0:188,0:188:99:0,529,5471 0/0:243,0:243:99:0,670,6859 0/0:221,0:221:99:0,619,6285 0/0:250,0:250:99:0,682,7183 0/0:229,0:229:99:0,625,6538 0/0:237,0:237:99:0,673,6673 0/0:240,0:240:99:0,667,6842 0/0:249,0:249:99:0,703,7195 0/0:247,1:248:99:0,634,6617 0/0:248,1:249:99:0,691,7200 0/0:221,1:222:99:0,634,6626 0/0:136,3:139:99:0,379,3859 0/0:8,4:12:24.02:0,24,221 0/1:110,31:141:99:352,0,2823 16 16358994 . G A 220.40 . AC=1;AF=0.012;AN=82;BaseQRankSum=3.979;DP=6458;DS;Dels=0.00;FS=9.295;HRun=0;HaplotypeScore=0.9521;InbreedingCoeff=-0.0175;MQ=10.32;MQ0=4613;MQRankSum=3.229;QD=1.99;ReadPosRankSum=-1.578 GT:AD:DP:GQ:PL 0/0:111,0:111:39.04:0,39,373 0/0:122,0:122:48.03:0,48,453 0/0:94,0:94:15.02:0,15,149 0/0:248,0:248:36.06:0,36,367 0/0:246,0:248:69.15:0,69,738 0/0:215,0:215:75.14:0,75,778 0/0:189,1:190:51.07:0,51,505 0/0:226,0:226:66.13:0,66,691 0/0:122,0:123:30.02:0,30,286 0/0:104,0:104:21.03:0,21,213 0/0:116,0:117:57.08:0,57,571 0/0:127,0:128:36.05:0,36,355 0/0:103,0:103:18.01:0,18,170 0/0:132,0:132:12.02:0,12,125 0/0:237,0:239:51.05:0,51,485 0/0:127,0:127:33.07:0,33,346 0/0:121,0:121:18.03:0,18,183 0/0:158,1:160:33.01:0,33,314 0/0:203,0:204:66.08:0,66,654 0/0:213,0:213:54.08:0,54,537 0/0:200,0:200:66.07:0,66,635 0/0:136,0:137:33.03:0,33,314 0/0:240,0:240:75.12:0,75,754 0/0:194,0:194:45.05:0,45,441 0/0:205,0:205:69.09:0,69,703 0/0:168,0:169:45.08:0,45,461 0/0:117,0:117:36.05:0,36,363 0/0:125,0:125:45.06:0,45,447 0/0:113,0:113:39.06:0,39,398 0/0:126,0:126:21.01:0,21,195 0/1:82,29:111:99:266,0,129 0/0:184,0:185:42.08:0,42,434 0/0:118,0:118:36.06:0,36,365 0/0:147,0:147:63.09:0,63,622 0/0:123,0:123:30.04:0,30,300 0/0:139,0:140:6.01:0,6,59 0/0:203,0:203:39.03:0,39,370 0/0:123,0:123:27.04:0,27,266 0/0:127,0:127:33.06:0,33,342 0/0:140,0:140:12.02:0,12,117 ./. 0/0:129,0:129:24.05:0,24,247 16 18544348 . T G 602.44 . AC=1;AF=0.012;AN=84;BaseQRankSum=6.051;DP=7428;DS;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=1.0246;InbreedingCoeff=-0.0121;MQ=11.61;MQ0=5473;MQRankSum=2.948;QD=2.87;ReadPosRankSum=-0.137 GT:AD:DP:GQ:PL 0/0:130,0:131:72.16:0,72,775 0/0:137,0:137:45.11:0,45,488 0/0:160,0:160:63.16:0,63,690 0/0:249,0:250:99:0,99,1064 0/0:250,0:250:99:0,132,1437 0/0:248,1:250:84.22:0,84,928 0/1:179,31:210:99:649,0,447 0/0:231,0:231:87.18:0,87,933 0/0:144,0:144:36.08:0,36,391 0/0:177,0:178:69.15:0,69,744 0/0:141,0:141:60.13:0,60,652 0/0:147,0:147:48.09:0,48,508 0/0:142,0:142:42.08:0,42,445 0/0:143,0:144:48.12:0,48,524 0/0:248,0:249:90.21:0,90,971 0/0:101,1:102:63.17:0,63,699 0/0:158,1:159:80.55:0,81,1054 0/0:125,0:125:69.18:0,69,759 0/0:231,0:231:99:0,108,1136 0/0:218,1:219:99:0,120,1322 0/0:204,2:206:51.11:0,51,544 0/0:116,0:116:24.07:0,24,270 0/0:249,1:250:99:0,162,1774 0/0:231,1:233:81.21:0,81,895 0/0:250,0:250:99:0,102,1102 0/0:231,0:231:90.19:0,90,965 0/0:108,0:108:42.11:0,42,463 0/0:146,0:146:54.12:0,54,582 0/0:125,0:126:39.10:0,39,428 0/0:178,0:178:66.17:0,66,728 0/0:146,1:147:69.16:0,69,749 0/0:209,0:209:99:0,99,1092 0/0:171,0:171:51.11:0,51,546 0/0:145,0:145:75.19:0,75,828 0/0:150,0:150:60.14:0,60,649 0/0:146,0:146:60.15:0,60,655 0/0:214,2:216:66.15:0,66,717 0/0:142,0:142:69.18:0,69,760 0/0:147,0:147:66.16:0,66,720 0/0:198,0:199:99:0,102,1126 0/0:167,0:167:51.12:0,51,557 0/0:144,0:144:63.15:0,63,686 16 18544391 . GTGACCAAAGACT G 1373.14 . AC=1;AF=0.012;AN=84;BaseQRankSum=6.961;DP=7493;DS;FS=1.359;HRun=0;HaplotypeScore=256.4588;InbreedingCoeff=-0.0121;MQ=12.47;MQ0=5448;MQRankSum=2.865;QD=5.49;ReadPosRankSum=0.603 GT:AD:DP:GQ:PL 0/0:124,0:18:54.19:0,54,3017 0/0:154,0:19:54.19:0,54,3316 0/0:160,0:18:51.17:0,51,2828 0/0:249,0:52:99:0,157,9110 0/0:237,0:50:99:0,147,8134 0/0:235,0:47:99:0,132,7546 0/0:222,0:56:99:0,166,8906 0/0:247,0:51:99:0,144,8340 0/0:155,0:12:33.11:0,33,1950 0/0:181,0:22:63.21:0,63,3481 0/0:144,0:16:48.16:0,48,2661 0/0:150,0:15:45.15:0,45,2415 0/0:130,0:12:36.12:0,36,2021 0/0:147,0:17:48.16:0,48,2744 0/0:250,0:53:99:0,160,9083 0/0:110,0:17:51.17:0,51,2771 0/0:164,0:18:48.16:0,48,2753 0/0:124,0:15:45.15:0,45,2390 0/0:223,0:24:69.22:0,69,3502 0/0:240,0:57:99:0,169,9683 0/0:240,0:36:99:0,105,6032 0/0:134,0:22:63.21:0,63,3428 0/1:225,25:70:99:1428,0,8664 0/0:234,0:38:99:0,105,6250 0/0:234,0:56:99:0,163,9598 0/0:223,0:41:99:0,120,7160 0/0:123,0:10:30.10:0,30,1728 0/0:156,0:16:48.16:0,48,2735 0/0:106,0:11:33.11:0,33,1953 0/0:159,0:16:42.14:0,42,2312 0/0:145,0:18:48.16:0,48,2765 0/0:228,0:46:99:0,138,7868 0/0:163,0:29:84.29:0,84,4977 0/0:153,0:27:78.27:0,78,4251 0/0:151,0:14:42.14:0,42,2470 0/0:160,0:24:72.25:0,72,4266 0/0:234,0:28:78.26:0,78,4309 0/0:127,0:21:60.21:0,60,3616 0/0:144,0:17:51.17:0,51,2898 0/0:163,0:25:69.23:0,69,4080 0/0:160,0:18:54.18:0,54,3135 0/0:160,0:28:78.26:0,78,4311 16 18847416 . G A 1605.32 . AC=7;AF=0.083;AN=84;BaseQRankSum=3.672;DP=814;Dels=0.00;FS=1.016;HRun=0;HaplotypeScore=0.4255;InbreedingCoeff=-0.0932;MQ=59.12;MQ0=0;MQRankSum=1.011;QD=10.36;ReadPosRankSum=2.070 GT:AD:DP:GQ:PL 0/0:21,0:21:60.17:0,60,702 0/0:17,0:17:51.12:0,51,574 0/0:16,0:16:39.11:0,39,464 0/0:29,0:29:69.20:0,69,850 0/1:16,8:24:99:210,0,466 0/0:21,0:21:48.14:0,48,619 0/0:18,0:18:39.13:0,39,531 0/0:16,0:16:45.13:0,45,551 0/1:13,5:18:99:110,0,364 0/1:6,2:8:48.29:48,0,163 0/0:15,0:15:45.13:0,45,526 0/0:12,1:13:8.43:0,8,368 0/0:12,0:12:36.10:0,36,412 0/0:20,0:20:60.15:0,60,675 0/0:46,0:46:99:0,123,1385 0/0:15,0:15:39.11:0,39,459 0/0:20,0:20:60.15:0,60,667 0/0:15,0:15:36.10:0,36,424 0/0:39,0:39:99:0,108,1267 0/1:18,16:34:99:473,0,429 0/0:31,0:31:84.23:0,84,976 0/0:24,0:24:66.17:0,66,743 0/0:20,0:20:57.15:0,57,714 0/0:6,0:6:15.04:0,15,167 0/0:17,0:17:51.14:0,51,618 0/0:15,0:15:36.11:0,36,470 0/0:13,0:13:36.11:0,36,429 0/0:17,0:17:51.13:0,51,594 0/0:15,0:15:42.13:0,42,511 0/0:8,0:8:24.07:0,24,275 0/0:19,0:19:48.14:0,48,580 0/1:14,15:29:99:419,0,383 0/0:26,0:26:69.19:0,69,827 0/0:21,0:21:54.14:0,54,629 0/0:18,0:18:51.15:0,51,620 0/1:12,7:19:99:203,0,363 0/0:30,0:30:87.24:0,87,1004 0/0:9,0:9:27.08:0,27,318 0/0:11,0:11:33.10:0,33,392 0/0:16,0:16:42.12:0,42,485 0/0:10,0:10:30.08:0,30,338 0/1:14,9:23:99:255,0,400 16 18869558 . C T 923.69 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.204;DP=1260;Dels=0.00;FS=7.373;HRun=0;HaplotypeScore=0.5200;InbreedingCoeff=-0.0244;MQ=50.99;MQ0=4;MQRankSum=3.090;QD=12.48;ReadPosRankSum=1.368 GT:AD:DP:GQ:PL 0/0:24,0:24:69.18:0,69,782 0/0:34,0:34:93.27:0,93,1115 0/0:22,0:22:66.16:0,66,758 0/0:29,0:29:84.26:0,84,1066 0/0:26,0:26:72.24:0,72,965 0/0:15,0:15:45.15:0,45,599 0/0:19,0:19:54.16:0,54,679 0/0:15,0:15:39.12:0,39,498 0/0:38,0:38:99:0,108,1286 0/0:19,0:19:51.15:0,51,617 0/0:28,0:28:75.22:0,75,899 0/0:38,1:39:99:0,102,1198 0/0:38,0:38:99:0,108,1261 0/0:28,1:29:55.53:0,56,866 0/0:84,0:84:99:0,211,2561 0/0:27,0:27:75.22:0,75,901 0/0:33,0:33:81.25:0,81,1022 0/0:33,0:33:87.24:0,87,1049 0/1:23,23:46:99:601,0,678 0/1:14,14:28:99:385,0,392 0/0:46,0:46:99:0,123,1503 0/0:27,0:27:75.22:0,75,906 0/0:17,0:17:42.14:0,42,570 0/0:13,0:13:39.13:0,39,519 0/0:16,0:16:42.13:0,42,556 0/0:12,0:12:33.11:0,33,441 0/0:18,0:19:54.14:0,54,609 0/0:24,0:24:69.13:0,69,758 0/0:30,0:30:75.22:0,75,915 0/0:18,0:18:54.15:0,54,642 0/0:22,0:22:66.18:0,66,768 0/0:43,0:43:99:0,111,1366 0/0:50,1:51:99:0,103,1544 0/0:34,0:34:90.25:0,90,1058 0/0:26,0:26:75.22:0,75,897 0/0:40,0:40:99:0,105,1272 0/0:41,0:41:96.25:0,96,1133 0/0:43,0:43:99:0,111,1339 0/0:20,0:20:60.16:0,60,689 0/0:33,0:33:93.27:0,93,1099 0/0:27,0:27:72.19:0,72,832 0/0:32,0:32:81.23:0,81,995 16 18903605 . T G 41.81 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.995;DP=391;Dels=0.00;FS=4.966;HRun=1;HaplotypeScore=0.1344;InbreedingCoeff=-0.0280;MQ=48.13;MQ0=1;MQRankSum=-1.787;QD=4.65;ReadPosRankSum=0.502 GT:AD:DP:GQ:PL 0/0:8,0:8:24.08:0,24,297 0/0:6,0:6:18.05:0,18,213 0/1:3,6:9:87.85:88,0,93 0/0:4,0:4:12.02:0,12,134 0/0:5,0:5:12.03:0,12,149 0/0:6,0:6:15.05:0,15,200 0/0:4,0:4:9.02:0,9,111 0/0:1,0:1:3.01:0,3,36 0/0:13,0:13:39.09:0,39,462 0/0:11,0:11:30.07:0,30,360 0/0:5,0:5:15.05:0,15,183 0/0:9,0:9:27.09:0,27,337 0/0:9,0:9:27.07:0,27,323 0/0:13,0:13:36.08:0,36,426 0/0:33,0:33:93.19:0,93,1088 0/0:8,0:8:18.06:0,18,238 0/0:9,0:9:21.05:0,21,259 0/0:4,0:4:9.03:0,9,119 0/0:20,0:20:54.12:0,54,636 0/0:10,0:10:30.07:0,30,359 0/0:18,0:18:45.13:0,45,553 0/0:8,0:8:24.08:0,24,296 0/0:5,0:5:15.05:0,15,188 0/0:4,0:4:12.02:0,12,141 0/0:3,0:3:6.02:0,6,82 0/0:7,0:7:18.04:0,18,223 0/0:5,0:5:15.04:0,15,175 0/0:8,0:8:24.05:0,24,286 0/0:8,0:8:24.05:0,24,283 0/0:8,0:8:24.05:0,24,279 0/0:4,0:4:9.02:0,9,104 0/0:17,0:17:45.13:0,45,548 0/0:16,0:16:42.13:0,42,529 0/0:9,0:9:21.07:0,21,265 0/0:6,0:6:18.04:0,18,208 0/0:8,0:8:24.04:0,24,273 0/0:19,0:19:54.17:0,54,666 0/0:8,0:8:24.07:0,24,291 0/0:6,0:6:18.06:0,18,221 0/0:14,0:14:39.10:0,39,478 0/0:7,0:7:21.06:0,21,255 0/0:16,0:16:39.10:0,39,499 16 19087167 . C T 1718.23 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.661;DP=3561;DS;Dels=0.00;FS=3.093;HRun=0;HaplotypeScore=1.3278;InbreedingCoeff=-0.0244;MQ=59.22;MQ0=1;MQRankSum=0.798;QD=12.73;ReadPosRankSum=-1.055 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,180,2000 0/0:73,0:73:99:0,202,2263 0/0:66,0:66:99:0,171,1972 0/0:123,0:123:99:0,337,4067 0/0:118,0:118:99:0,337,4107 0/0:81,0:81:99:0,214,2597 0/0:93,0:93:99:0,244,2968 0/0:76,0:76:99:0,214,2582 0/1:33,41:74:99:1128,0,814 0/1:36,25:61:99:653,0,1014 0/0:64,0:64:99:0,177,2000 0/0:89,0:89:99:0,247,2766 0/0:56,0:56:99:0,147,1672 0/0:69,0:69:99:0,195,2148 0/0:219,1:220:99:0,530,6446 0/0:62,0:62:99:0,180,2028 0/0:66,0:66:99:0,177,1983 0/0:78,0:78:99:0,220,2458 0/0:128,0:128:99:0,343,3854 0/0:112,0:112:99:0,304,3434 0/0:110,0:113:99:0,313,3486 0/0:86,0:86:99:0,232,2655 0/0:105,0:105:99:0,301,3629 0/0:74,0:74:99:0,193,2386 0/0:85,0:85:99:0,232,2835 0/0:84,0:84:99:0,238,2903 0/0:50,0:50:99:0,147,1633 0/0:75,0:75:99:0,196,2240 0/0:74,0:74:99:0,208,2324 0/0:70,0:70:99:0,193,2167 0/0:64,0:64:99:0,168,1907 0/0:116,0:116:99:0,298,3458 0/0:72,0:72:99:0,196,2229 0/0:76,0:76:99:0,220,2413 0/0:86,0:86:99:0,229,2618 0/0:73,0:73:99:0,202,2289 0/0:115,0:115:99:0,310,3469 0/0:68,0:69:99:0,189,2119 0/0:75,0:75:99:0,211,2294 0/0:77,0:77:99:0,211,2402 0/0:69,0:69:99:0,177,2034 0/0:76,0:77:99:0,219,2375 16 19278323 . C T 348.76 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.814;DP=1539;Dels=0.00;FS=5.481;HRun=0;HaplotypeScore=0.7726;InbreedingCoeff=-0.0127;MQ=58.63;MQ0=0;MQRankSum=0.625;QD=12.92;ReadPosRankSum=-1.191 GT:AD:DP:GQ:PL 0/0:34,0:34:90.22:0,90,1045 0/0:21,0:21:51.13:0,51,592 0/0:25,0:25:75.21:0,75,862 0/0:78,0:78:99:0,217,2652 0/0:63,0:64:99:0,159,1971 0/0:58,0:58:99:0,150,1852 0/0:42,0:42:99:0,102,1299 0/0:57,0:57:99:0,150,1857 0/0:25,0:25:63.18:0,63,730 0/1:13,14:27:99:395,0,291 0/0:30,0:30:87.22:0,87,965 0/0:27,0:27:69.20:0,69,824 0/0:24,0:24:63.15:0,63,681 0/0:26,0:26:75.17:0,75,842 0/0:83,0:84:99:0,223,2565 0/0:20,0:20:60.14:0,60,648 0/0:21,0:21:57.15:0,57,645 0/0:25,0:25:66.19:0,66,783 0/0:43,1:45:99:0,114,1369 0/0:44,0:44:99:0,111,1330 0/0:48,0:48:99:0,126,1462 0/0:33,0:33:87.20:0,87,1006 0/0:73,0:73:99:0,181,2266 0/0:35,0:35:93.29:0,93,1180 0/0:65,0:65:99:0,172,2165 0/0:59,0:59:99:0,144,1801 0/0:22,0:22:63.14:0,63,701 0/0:24,0:24:66.14:0,66,732 0/0:16,1:17:12.56:0,13,506 0/0:12,0:12:36.09:0,36,386 0/0:15,0:15:45.12:0,45,513 0/0:51,0:51:99:0,144,1659 0/0:36,0:36:99:0,99,1115 0/0:29,0:29:84.20:0,84,937 0/0:22,0:22:63.17:0,63,729 0/0:34,0:34:93.22:0,93,1034 0/0:46,0:46:99:0,123,1379 0/0:31,0:31:87.23:0,87,978 0/0:30,0:30:90.23:0,90,1006 0/0:26,0:26:75.20:0,75,842 0/0:23,0:23:66.18:0,66,742 0/0:31,0:31:81.22:0,81,961 16 19278371 . G C 477.44 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.904;DP=1011;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9794;InbreedingCoeff=-0.0246;MQ=58.89;MQ0=0;MQRankSum=0.714;QD=8.84;ReadPosRankSum=0.712 GT:AD:DP:GQ:PL 0/0:20,0:20:51.15:0,51,619 0/0:19,0:19:48.15:0,48,603 0/0:21,0:21:54.17:0,54,672 0/0:64,0:64:99:0,166,2138 0/0:40,0:40:99:0,117,1472 0/1:17,14:31:99:360,0,478 0/1:17,6:23:99:180,0,528 0/0:31,0:31:84.27:0,84,1082 0/0:13,0:13:36.11:0,36,435 0/0:18,0:18:48.13:0,48,576 0/0:17,0:17:51.15:0,51,616 0/0:19,0:20:54.15:0,54,648 0/0:7,0:7:21.06:0,21,255 0/0:19,0:19:51.15:0,51,614 0/0:51,0:51:99:0,132,1618 0/0:11,0:11:33.10:0,33,396 0/0:13,0:13:39.12:0,39,472 0/0:19,0:19:57.17:0,57,679 0/0:35,0:35:99:0,102,1197 0/0:35,0:35:99:0,99,1190 0/0:41,0:41:99:0,111,1300 0/0:24,0:24:72.18:0,72,834 0/0:56,0:56:99:0,160,2093 0/0:32,0:32:87.27:0,87,1095 0/0:42,0:42:99:0,117,1502 0/0:16,0:16:45.14:0,45,586 0/0:16,0:16:42.13:0,42,513 0/0:19,1:20:51.12:0,51,588 0/0:10,0:10:30.07:0,30,342 0/0:11,0:11:33.08:0,33,381 0/0:15,0:15:39.10:0,39,470 0/0:35,0:35:84.27:0,84,1084 0/0:21,0:21:57.15:0,57,662 0/0:17,0:17:39.11:0,39,467 0/0:13,0:13:30.10:0,30,394 0/0:15,0:15:45.12:0,45,530 0/0:28,0:28:66.17:0,66,782 0/0:25,0:25:66.20:0,66,805 0/0:20,0:20:54.16:0,54,661 0/0:20,0:20:51.16:0,51,632 0/0:11,0:11:24.07:0,24,297 0/0:16,0:16:42.13:0,42,503 16 19471571 . G A 5301.33 . AC=5;AF=0.060;AN=84;BaseQRankSum=12.810;DP=3667;Dels=0.00;FS=5.618;HRun=0;HaplotypeScore=1.2259;InbreedingCoeff=-0.0633;MQ=59.53;MQ0=0;MQRankSum=-0.651;QD=12.53;ReadPosRankSum=1.511 GT:AD:DP:GQ:PL 0/0:78,0:78:99:0,220,2471 0/0:64,0:64:99:0,168,1893 0/0:77,0:77:99:0,208,2405 0/0:115,0:115:99:0,298,3684 0/1:58,45:103:99:1235,0,1617 0/0:108,0:108:99:0,295,3663 0/0:93,0:93:99:0,247,2997 0/0:88,0:88:99:0,229,2894 0/0:68,0:68:99:0,193,2167 0/0:89,0:89:99:0,253,2794 0/0:76,0:76:99:0,208,2361 0/0:68,0:68:99:0,186,2099 0/0:63,0:64:99:0,180,2015 0/0:71,0:71:99:0,208,2291 0/0:240,0:240:99:0,623,7119 0/0:43,0:43:99:0,120,1319 0/0:75,0:75:99:0,211,2376 0/0:71,1:72:99:0,164,2196 0/0:125,0:125:99:0,340,3770 0/0:127,0:128:99:0,322,3763 0/1:61,41:102:99:1132,0,1613 0/0:95,0:95:99:0,226,2713 0/0:134,0:134:99:0,334,4235 0/0:90,0:90:99:0,244,3046 0/0:98,0:98:99:0,262,3281 0/0:97,0:97:99:0,253,3165 0/0:63,0:63:99:0,177,1967 0/0:88,0:88:99:0,226,2598 0/0:57,0:57:99:0,168,1853 0/0:65,0:65:99:0,186,2049 0/0:73,0:73:99:0,211,2336 0/1:46,48:94:99:1288,0,1147 0/0:74,0:74:99:0,205,2309 0/1:35,27:62:99:790,0,936 0/0:73,0:73:99:0,193,2207 0/1:33,29:62:99:857,0,885 0/0:99,0:99:99:0,247,2783 0/0:71,0:71:99:0,192,2162 0/0:94,0:94:99:0,253,2864 0/0:70,0:70:99:0,195,2157 0/0:75,0:75:99:0,214,2359 0/0:86,0:86:99:0,235,2665 16 19567051 . G A 1010.94 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.064;DP=1649;Dels=0.00;FS=1.306;HRun=2;HaplotypeScore=1.3749;InbreedingCoeff=-0.0244;MQ=57.51;MQ0=0;MQRankSum=2.285;QD=12.96;ReadPosRankSum=-0.133 GT:AD:DP:GQ:PL 0/0:22,0:22:63.20:0,63,786 0/0:27,0:27:66.21:0,66,839 0/0:22,0:22:63.19:0,63,777 0/0:98,0:98:99:0,259,3456 0/0:84,0:84:99:0,235,3084 0/0:65,2:67:99:0,178,2336 0/0:48,0:48:99:0,129,1713 0/0:55,0:55:99:0,135,1823 0/0:25,0:25:63.19:0,63,800 0/0:24,0:24:66.21:0,66,847 0/0:34,0:34:84.26:0,84,1076 0/0:20,0:21:60.16:0,60,731 0/0:26,0:26:69.21:0,69,875 0/0:28,0:28:75.24:0,75,959 0/0:86,0:87:99:0,214,2713 0/0:24,0:24:69.20:0,69,847 0/0:27,0:27:75.24:0,75,951 0/0:23,0:23:63.20:0,63,803 0/0:48,0:48:99:0,123,1573 0/0:42,0:42:99:0,123,1530 0/0:59,0:59:99:0,156,1921 0/0:33,0:33:87.27:0,87,1091 0/0:104,0:104:99:0,262,3547 0/1:20,17:37:99:472,0,537 0/1:21,20:41:99:602,0,706 0/0:47,0:47:99:0,129,1728 0/0:21,0:21:57.17:0,57,714 0/0:34,0:34:87.27:0,87,1104 0/0:22,0:22:66.20:0,66,816 0/0:24,0:24:63.20:0,63,799 0/0:28,0:29:75.24:0,75,967 0/0:63,0:63:99:0,172,2168 0/0:42,0:42:99:0,108,1364 0/0:20,0:20:51.15:0,51,633 0/0:23,0:23:69.19:0,69,827 0/0:24,0:24:63.20:0,63,797 0/0:57,0:57:99:0,144,1814 0/0:32,0:32:87.27:0,87,1107 0/0:26,0:26:75.24:0,75,942 0/0:22,0:22:54.16:0,54,669 0/0:19,0:19:48.14:0,48,601 0/0:38,0:38:99:0,105,1319 16 19653745 . G A 3040.37 . AC=2;AF=0.024;AN=84;BaseQRankSum=9.026;DP=2989;Dels=0.00;FS=14.711;HRun=0;HaplotypeScore=1.1301;InbreedingCoeff=-0.0244;MQ=59.19;MQ0=0;MQRankSum=0.005;QD=13.39;ReadPosRankSum=1.944 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,181,2116 0/0:42,0:42:99:0,111,1308 0/0:54,0:54:99:0,150,1740 0/0:128,0:128:99:0,322,4173 0/0:120,0:120:99:0,301,3915 0/1:72,56:128:99:1591,0,1992 0/1:43,55:99:99:1512,0,1094 0/0:92,0:92:99:0,226,2918 0/0:48,0:48:99:0,129,1530 0/0:51,0:51:99:0,126,1542 0/0:39,0:39:99:0,102,1236 0/0:38,2:40:74.33:0,74,1219 0/0:50,0:50:99:0,120,1451 0/0:54,0:54:99:0,147,1724 0/0:233,0:233:99:0,581,7035 0/0:42,0:42:99:0,120,1382 0/0:57,0:57:99:0,147,1767 0/0:44,0:44:99:0,120,1365 0/0:74,0:74:99:0,183,2186 0/0:85,0:85:99:0,214,2631 0/0:108,0:108:99:0,256,3138 0/0:50,0:50:99:0,129,1495 0/0:143,0:143:99:0,331,4394 0/0:72,0:72:99:0,187,2368 0/0:102,0:102:99:0,247,3251 0/0:111,0:111:99:0,283,3650 0/0:39,0:39:99:0,102,1232 0/0:69,0:69:99:0,177,2111 0/0:32,0:32:84.25:0,84,1022 0/0:64,0:64:99:0,180,2064 0/0:39,0:39:99:0,105,1242 0/0:84,0:84:99:0,196,2435 0/0:38,0:38:99:0,102,1227 0/0:60,1:61:99:0,126,1844 0/0:57,1:58:99:0,124,1864 0/0:60,0:61:99:0,168,1925 0/0:75,0:75:99:0,180,2225 0/0:53,0:53:99:0,144,1710 0/0:37,0:37:99:0,99,1160 0/0:42,0:42:99:0,111,1287 0/0:45,0:45:99:0,123,1446 0/0:59,0:59:99:0,165,1944 16 19680546 . T C 32378.70 . 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T C 25310.43 . 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G A 745.18 . 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T C 2678.60 . AC=1;AF=0.012;AN=84;BaseQRankSum=13.577;DP=7363;DS;Dels=0.00;FS=3.421;HRun=2;HaplotypeScore=2.5880;InbreedingCoeff=-0.0120;MQ=47.29;MQ0=5;MQRankSum=-1.813;QD=11.90;ReadPosRankSum=1.134 GT:AD:DP:GQ:PL 0/0:163,0:163:99:0,463,5477 0/0:148,0:148:99:0,412,4894 0/0:152,0:152:99:0,436,5110 0/0:250,0:250:99:0,716,8621 0/0:250,0:250:99:0,710,8614 0/0:249,1:250:99:0,707,8787 0/1:131,94:225:99:2725,0,3883 0/0:248,0:250:99:0,692,8443 0/0:156,0:156:99:0,439,5154 0/0:155,1:156:99:0,439,5134 0/0:121,0:121:99:0,352,4181 0/0:160,0:160:99:0,454,5361 0/0:136,0:136:99:0,376,4467 0/0:152,0:153:99:0,421,5006 0/0:249,1:250:99:0,719,8417 0/0:113,0:114:99:0,337,3916 0/0:159,0:159:99:0,451,5320 0/0:143,0:144:99:0,409,4860 0/0:234,0:234:99:0,638,7688 0/0:206,0:208:99:0,569,6796 0/0:210,0:211:99:0,575,6881 0/0:124,0:124:99:0,349,4069 0/0:250,0:250:99:0,710,8627 0/0:232,0:233:99:0,665,8064 0/0:214,0:214:99:0,599,7288 0/0:231,1:232:99:0,653,7897 0/0:118,0:118:99:0,340,3956 0/0:162,0:162:99:0,454,5427 0/0:119,0:119:99:0,340,4042 0/0:139,0:139:99:0,385,4615 0/0:141,0:141:99:0,385,4573 0/0:207,0:207:99:0,575,6851 0/0:122,0:122:99:0,352,4113 0/0:161,0:161:99:0,460,5487 0/0:149,0:150:99:0,418,5007 0/0:151,0:151:99:0,421,5020 0/0:194,0:194:99:0,539,6466 0/0:164,0:164:99:0,454,5364 0/0:154,2:156:99:0,422,5173 0/0:159,0:161:99:0,445,5328 0/0:124,0:124:99:0,349,4119 0/0:151,0:151:99:0,430,5074 16 20651825 . C T 671.32 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.626;DP=3746;DS;Dels=0.00;FS=5.436;HRun=1;HaplotypeScore=2.1912;InbreedingCoeff=-0.0120;MQ=58.62;MQ0=0;MQRankSum=1.079;QD=10.33;ReadPosRankSum=-1.257 GT:AD:DP:GQ:PL 0/0:70,0:70:99:0,193,2376 0/0:83,0:83:99:0,220,2759 0/0:70,0:70:99:0,202,2535 0/0:132,0:132:99:0,361,4838 0/0:115,0:115:99:0,328,4366 0/0:98,0:98:99:0,268,3597 0/0:98,0:98:99:0,280,3723 0/0:91,0:91:99:0,250,3326 0/0:80,0:80:99:0,226,2859 0/0:80,0:80:99:0,238,2932 0/0:66,0:66:99:0,181,2286 0/0:61,0:61:99:0,178,2210 0/0:81,0:81:99:0,229,2884 0/0:75,0:75:99:0,214,2690 0/0:215,0:215:99:0,599,7483 0/0:70,0:70:99:0,202,2535 0/0:88,0:88:99:0,244,3054 0/1:40,25:65:99:718,0,1181 0/0:121,0:123:99:0,349,4344 0/0:149,0:149:99:0,394,5016 0/0:145,0:146:99:0,403,5052 0/0:81,0:81:99:0,214,2713 0/0:155,0:155:99:0,418,5617 0/0:77,0:77:99:0,205,2740 0/0:93,0:93:99:0,259,3510 0/0:90,0:90:99:0,238,3230 0/0:61,0:61:99:0,169,2130 0/0:56,0:56:99:0,163,2028 0/0:53,0:53:99:0,144,1836 0/0:74,0:74:99:0,202,2569 0/0:61,0:61:99:0,169,2145 0/0:128,0:128:99:0,331,4231 0/0:89,0:89:99:0,256,3220 0/0:64,0:64:99:0,178,2239 0/0:75,0:75:99:0,202,2535 0/0:74,0:74:99:0,205,2620 0/0:117,0:118:99:0,325,4060 0/0:76,0:76:99:0,211,2591 0/0:69,0:69:99:0,196,2447 0/0:66,0:66:99:0,184,2355 0/0:59,0:59:99:0,175,2186 0/0:71,0:71:99:0,202,2530 16 20681237 . G T 217 . AC=7;AF=0.083;AN=84;BaseQRankSum=-13.595;DP=2594;DS;Dels=0.00;FS=267.709;HRun=1;HaplotypeScore=1.5429;InbreedingCoeff=-0.0961;MQ=58.95;MQ0=0;MQRankSum=-1.446;QD=0.56;ReadPosRankSum=-10.584 GT:AD:DP:GQ:PL 0/0:44,8:52:86.56:0,87,1236 0/0:45,8:53:33.90:0,34,1094 0/1:40,13:53:28.71:29,0,916 0/0:80,17:97:89.40:0,89,1873 0/0:78,14:92:99:0,127,1935 0/0:73,11:84:99:0,115,1719 0/0:65,4:69:99:0,132,1639 0/0:58,5:63:88:0,88,1524 0/0:39,7:46:72.54:0,73,1054 0/0:40,5:45:69.61:0,70,1089 0/0:42,7:49:85.67:0,86,945 0/1:43,10:54:24.57:25,0,949 0/0:32,7:39:38.74:0,39,774 0/1:40,11:51:28.58:29,0,948 0/0:133,28:162:29.97:0,30,2991 0/0:34,8:42:21.55:0,22,870 0/0:40,7:47:59.34:0,59,857 0/0:52,2:54:99:0,120,1421 0/0:53,12:65:43.19:0,43,1146 0/0:68,4:72:93.16:0,93,1660 0/1:58,25:83:99:116,0,1289 0/0:58,6:64:87.57:0,88,1209 0/0:92,22:114:99:0,105,2270 0/0:60,5:65:65.37:0,65,1555 0/0:79,7:86:86.86:0,87,1744 0/0:58,12:70:82.01:0,82,1416 0/0:30,0:30:78.22:0,78,937 0/0:49,10:59:54.35:0,54,1209 0/0:45,5:50:18.32:0,18,997 0/0:41,9:50:46.79:0,47,898 0/0:34,12:46:2.21:0,2,796 0/0:75,5:80:99:0,186,2134 0/1:34,6:41:70.34:70,0,765 0/1:35,9:44:15.42:15,0,722 0/0:32,7:39:69.18:0,69,799 0/0:46,9:55:78.64:0,79,1209 0/0:52,4:56:85.55:0,86,1186 0/0:52,8:60:60.38:0,60,1277 0/1:48,11:59:46.09:46,0,1195 0/0:53,12:65:33.25:0,33,1323 0/0:37,4:41:78.17:0,78,883 0/0:40,7:47:48.08:0,48,926 16 20681237 . G GT 28.89 . AC=3;AF=0.036;AN=84;BaseQRankSum=-0.678;DP=2692;DS;FS=340.944;HRun=1;HaplotypeScore=206.1766;InbreedingCoeff=-0.0489;MQ=58.87;MQ0=0;MQRankSum=0.583;QD=0.14;ReadPosRankSum=-17.778 GT:AD:DP:GQ:PL 0/0:55,0:55:85.28:0,85,1340 0/0:53,0:53:77.44:0,77,1217 0/1:55,0:55:13.31:13,0,1036 0/0:99,0:99:99:0,124,1983 0/0:96,0:96:82.93:0,83,2049 0/0:81,0:79:96.89:0,97,1654 0/0:67,0:64:99:0,132,1600 0/0:67,0:66:99:0,103,1655 0/0:48,0:48:72.62:0,73,1155 0/0:45,0:45:79.39:0,79,1235 0/0:51,0:51:80.35:0,80,1209 0/0:56,0:56:22:0,22,1209 0/0:39,0:39:55.43:0,55,1001 0/0:53,0:53:25.54:0,26,1224 0/0:170,1:171:99:0,109,3507 0/0:44,0:44:92.12:0,92,1097 0/0:47,0:47:71.67:0,72,1033 0/0:52,6:58:17.68:0,18,1168 0/0:66,1:67:23.15:0,23,1173 0/0:78,0:78:99:0,151,2060 0/1:92,0:92:71.56:72,0,1444 0/0:62,0:62:99:0,145,1732 0/0:116,0:116:99:0,162,2464 0/0:63,0:62:99:0,131,1699 0/0:89,0:88:99:0,104,2094 0/0:72,0:69:99:0,106,1682 0/0:30,6:36:24.16:0,24,743 0/0:63,0:63:99:0,106,1496 0/0:49,0:49:72.23:0,72,1251 0/0:49,0:49:40.27:0,40,981 0/0:47,0:47:52.10:0,52,1006 0/0:82,0:82:99:0,162,2403 0/0:45,0:45:0.34:11,0,959 0/0:48,1:49:28.55:0,29,913 0/0:46,0:46:74.74:0,75,967 0/0:56,0:56:67.20:0,67,1374 0/0:59,7:66:23.23:0,23,1098 0/0:63,0:63:99:0,115,1681 0/1:58,0:58:22.56:23,0,1352 0/0:66,0:66:35.48:0,35,1350 0/0:42,0:42:67.25:0,67,898 0/0:51,0:51:67.10:0,67,1156 16 20855309 . A G 116649.40 . AC=70;AF=0.833;AN=84;BaseQRankSum=19.621;DP=4213;DS;Dels=0.00;FS=15.771;HRun=0;HaplotypeScore=1.3102;InbreedingCoeff=0.3143;MQ=59.30;MQ0=0;MQRankSum=0.438;QD=29.50;ReadPosRankSum=0.644 GT:AD:DP:GQ:PL 0/1:52,44:96:99:1182,0,1441 0/1:30,32:62:99:909,0,873 0/1:43,43:86:99:1228,0,1016 1/1:0,195:195:99:6344,467,0 1/1:0,159:159:99:5730,421,0 1/1:0,145:145:99:5011,370,0 0/1:67,71:138:99:2035,0,1801 1/1:0,106:106:99:3842,286,0 1/1:0,75:75:99:2586,205,0 1/1:1,87:88:99:2878,200,0 1/1:0,69:69:99:2284,181,0 1/1:0,82:82:99:2781,220,0 1/1:0,76:76:99:2447,193,0 1/1:0,81:81:99:2737,214,0 1/1:0,244:244:99:7877,617,0 1/1:0,68:68:99:2278,181,0 1/1:0,83:83:99:2879,232,0 1/1:0,77:77:99:2636,208,0 0/1:50,58:108:99:1540,0,1361 0/0:98,0:98:99:0,232,2937 1/1:1,97:98:99:3150,250,0 1/1:0,71:71:99:2447,193,0 0/1:116,107:223:99:3124,0,3064 1/1:0,129:129:99:4376,319,0 1/1:0,124:124:99:4550,337,0 1/1:0,114:114:99:3838,280,0 0/1:36,29:66:99:836,0,954 0/0:78,0:78:99:0,208,2543 1/1:0,69:69:99:2340,184,0 1/1:0,92:92:99:3131,250,0 1/1:0,69:69:99:2377,187,0 1/1:0,96:97:99:3223,250,0 1/1:0,70:70:99:2287,178,0 1/1:0,84:84:99:2964,235,0 1/1:1,82:83:99:2717,178,0 1/1:0,109:109:99:3692,289,0 0/1:44,47:92:99:1255,0,1163 0/0:83,0:83:99:0,220,2690 1/1:0,74:75:99:2613,208,0 1/1:0,83:83:99:2718,214,0 1/1:0,56:56:99:1994,159,0 1/1:1,110:112:99:3813,274,0 16 21038366 . A G 5642.57 . AC=41;AF=0.488;AN=84;BaseQRankSum=-20.797;DP=1359;Dels=0.00;FS=1131.031;HRun=2;HaplotypeScore=0.9662;InbreedingCoeff=-0.9605;MQ=57.05;MQ0=0;MQRankSum=1.460;QD=4.21;ReadPosRankSum=-17.129 GT:AD:DP:GQ:PL 0/1:11,14:25:99:121,0,351 0/1:7,15:22:99:157,0,219 0/1:6,11:17:86.42:86,0,152 0/1:31,45:76:99:457,0,732 0/1:17,42:59:99:329,0,446 0/1:26,29:55:26.62:27,0,736 0/1:19,22:41:99:144,0,453 0/1:16,34:50:99:316,0,347 0/1:11,14:25:98.89:99,0,356 0/1:14,10:24:17.23:17,0,392 0/1:14,8:22:99:108,0,443 0/0:11,9:20:6.41:0,6,326 0/1:10,19:29:99:106,0,240 0/1:8,8:16:41.88:42,0,147 0/1:31,42:74:99:252,0,872 0/1:7,17:24:99:178,0,181 0/1:9,13:22:99:196,0,256 0/1:12,12:24:99:119,0,357 0/1:13,16:29:99:136,0,334 0/1:21,21:43:20.75:21,0,503 0/1:10,22:32:99:123,0,260 0/1:7,15:22:99:112,0,155 0/1:26,45:71:99:411,0,572 0/1:11,25:36:84.96:85,0,296 0/1:23,30:53:99:168,0,658 0/1:10,25:35:99:267,0,273 0/1:11,9:20:25.83:26,0,333 0/1:9,18:27:99:131,0,213 0/1:5,9:14:39.16:39,0,151 0/1:17,12:29:62.95:63,0,455 0/1:6,6:12:64.70:65,0,192 0/1:15,20:35:99:139,0,400 0/1:24,21:45:76.17:76,0,554 0/1:10,14:24:99:105,0,222 0/1:7,10:17:99:117,0,214 0/1:6,13:19:97.53:98,0,160 0/1:21,19:40:99:131,0,522 0/1:13,13:26:45.95:46,0,404 0/1:11,11:22:99:104,0,241 0/1:12,15:27:99:178,0,336 0/1:10,8:18:54.91:55,0,261 0/1:16,22:38:99:193,0,345 16 21038368 . A G 69.60 . 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G C 10356.95 . 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G A 2159.93 . 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G A 6750.79 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.990;DP=6781;DS;Dels=0.00;FS=13.943;HRun=1;HaplotypeScore=3.3441;InbreedingCoeff=-0.0244;MQ=59.40;MQ0=0;MQRankSum=0.567;QD=14.06;ReadPosRankSum=2.074 GT:AD:DP:GQ:PL 0/0:125,0:125:99:0,334,4271 0/0:148,0:148:99:0,400,5129 0/0:113,0:113:99:0,319,4046 0/1:119,131:250:99:3926,0,3675 0/1:136,94:230:99:2825,0,4280 0/0:242,0:242:99:0,659,8852 0/0:203,0:203:99:0,542,7296 0/0:217,0:217:99:0,572,7791 0/0:131,0:131:99:0,355,4587 0/0:149,0:149:99:0,388,5048 0/0:149,0:149:99:0,403,5203 0/0:102,0:102:99:0,280,3597 0/0:115,0:115:99:0,310,3943 0/0:111,0:111:99:0,322,4069 0/0:250,0:250:99:0,716,9027 0/0:106,0:106:99:0,301,3832 0/0:114,0:114:99:0,316,4006 0/0:100,0:100:99:0,274,3493 0/0:235,0:238:99:0,638,8139 0/0:244,0:244:99:0,641,8284 0/0:230,0:230:99:0,629,7971 0/0:132,0:132:99:0,358,4593 0/0:250,0:250:99:0,677,9216 0/0:212,0:212:99:0,542,7452 0/0:237,0:239:99:0,629,8548 0/0:201,0:201:99:0,536,7333 0/0:94,0:94:99:0,265,3408 0/0:132,0:132:99:0,367,4710 0/0:109,0:109:99:0,307,3925 0/0:135,0:135:99:0,370,4769 0/0:108,0:108:99:0,301,3815 0/0:234,0:234:99:0,617,8045 0/0:171,0:171:99:0,466,5985 0/0:117,0:117:99:0,334,4233 0/0:96,0:96:99:0,271,3414 0/0:144,0:145:99:0,385,4899 0/0:198,0:199:99:0,542,6855 0/0:139,0:139:99:0,385,4921 0/0:134,0:134:99:0,370,4739 0/0:141,0:141:99:0,388,4963 0/0:90,0:90:99:0,250,3172 0/0:135,0:136:99:0,376,4793 16 21327273 . G A 1064.80 . 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T A 3159.65 . AC=4;AF=0.048;AN=84;BaseQRankSum=-12.096;DP=3692;DS;Dels=0.00;FS=0.740;HRun=0;HaplotypeScore=1.4842;InbreedingCoeff=-0.0500;MQ=59.32;MQ0=0;MQRankSum=0.412;QD=11.05;ReadPosRankSum=-2.388 GT:AD:DP:GQ:PL 0/0:62,0:62:99:0,166,2074 0/0:84,0:84:99:0,214,2709 0/0:62,0:62:99:0,166,2067 0/0:146,0:146:99:0,337,4430 0/0:104,0:104:99:0,259,3360 0/0:113,0:113:99:0,286,3789 0/0:109,1:110:99:0,223,3321 0/0:100,0:100:99:0,244,3137 0/0:83,0:83:99:0,205,2615 0/0:77,0:77:99:0,202,2513 0/0:74,0:74:99:0,199,2464 0/0:76,0:76:99:0,196,2450 0/0:69,0:69:99:0,178,2222 0/0:77,0:77:99:0,190,2402 0/0:249,0:249:99:0,611,7714 0/0:57,0:57:99:0,150,1850 0/0:82,0:82:99:0,220,2740 0/0:64,0:64:99:0,181,2217 0/0:138,0:138:99:0,352,4463 0/0:114,0:114:99:0,265,3416 0/0:134,0:135:99:0,322,4131 0/0:63,0:64:99:0,163,2041 0/0:157,0:157:99:0,379,4969 0/0:88,0:88:99:0,211,2771 0/0:96,0:96:99:0,244,3159 0/0:93,0:93:99:0,238,3059 0/0:48,0:48:99:0,138,1683 0/0:78,0:78:99:0,196,2479 0/0:64,0:64:99:0,172,2150 0/0:62,0:62:99:0,163,2046 0/0:50,0:50:99:0,141,1741 0/0:133,0:133:99:0,328,4178 0/0:81,0:81:99:0,202,2532 0/1:42,27:69:99:632,0,1166 0/0:68,0:68:99:0,187,2318 0/1:30,31:61:99:819,0,835 0/0:88,0:88:99:0,220,2757 0/0:56,0:56:99:0,147,1807 0/0:48,0:48:99:0,135,1645 0/1:49,31:80:99:820,0,1449 0/0:55,0:55:99:0,144,1798 0/1:38,38:76:99:976,0,1087 16 21742179 . C T 4.93 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.265;DP=2220;Dels=0.00;FS=26.439;HRun=0;HaplotypeScore=1.4941;InbreedingCoeff=0.6264;MQ=33.24;MQ0=17;MQRankSum=1.416;QD=0.99;ReadPosRankSum=-2.415 GT:AD:DP:GQ:PL 0/0:36,0:36:96.15:0,96,986 0/0:28,0:28:81.10:0,81,780 0/0:20,0:20:51.09:0,51,537 0/0:105,0:105:99:0,267,2746 0/0:98,0:98:99:0,249,2557 0/0:56,2:58:99:0,144,1493 0/0:39,1:40:93.16:0,93,1009 0/0:102,0:102:99:0,252,2642 0/0:54,0:54:99:0,138,1403 0/0:55,0:55:99:0,141,1435 0/0:37,0:37:99:0,102,1010 0/0:38,1:39:68.70:0,69,962 0/0:42,0:42:99:0,114,1115 0/1:0,5:5:0.98:55,6,0 0/0:180,0:180:99:0,445,4667 0/0:20,2:22:26.65:0,27,523 0/0:58,0:58:99:0,162,1615 0/0:49,0:49:99:0,120,1284 0/0:78,0:79:99:0,183,1866 0/0:71,0:71:99:0,186,1891 0/0:42,0:42:99:0,102,1048 0/0:13,1:14:39.05:0,39,371 0/0:119,0:119:99:0,297,3163 0/0:70,2:72:99:0,186,1868 0/0:89,0:89:99:0,243,2420 0/0:90,0:91:99:0,216,2313 0/0:32,0:32:90.08:0,90,850 0/0:47,0:47:99:0,120,1172 0/0:42,0:42:99:0,114,1136 0/0:20,2:22:60.06:0,60,556 0/0:23,2:25:54.09:0,54,572 0/0:96,0:96:99:0,240,2456 0/0:45,0:45:99:0,117,1189 0/0:15,0:15:42.03:0,42,393 0/0:38,0:38:99:0,99,1009 0/0:23,1:24:35.68:0,36,622 0/0:81,0:81:99:0,219,2167 0/0:37,0:37:99:0,105,1019 0/0:40,0:40:99:0,108,1070 0/0:21,3:24:1.52:4,0,509 0/0:26,0:26:69.10:0,69,704 0/0:20,0:20:54.08:0,54,543 16 21742188 . G A 1433.78 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.585;DP=2317;Dels=0.00;FS=31.430;HRun=2;HaplotypeScore=0.9595;InbreedingCoeff=-0.0269;MQ=31.02;MQ0=224;MQRankSum=-2.935;QD=8.91;ReadPosRankSum=1.483 GT:AD:DP:GQ:PL 0/0:38,0:38:93.17:0,93,1009 0/0:34,0:34:72.10:0,72,716 0/0:21,0:21:45.09:0,45,505 0/0:109,0:109:99:0,264,2791 0/0:105,0:105:99:0,243,2514 0/0:64,0:64:99:0,132,1452 0/0:46,0:46:93.17:0,93,1049 0/0:109,0:110:99:0,243,2633 0/0:51,0:51:99:0,123,1288 0/0:56,0:56:99:0,132,1395 0/0:40,0:40:93.12:0,93,958 0/0:43,0:43:90.15:0,90,946 0/0:45,1:46:86.51:0,87,1117 0/0:8,0:8:6.01:0,6,63 0/0:186,0:186:99:0,412,4473 0/0:20,0:20:45.07:0,45,458 0/0:61,0:61:99:0,144,1511 0/0:50,0:50:99:0,114,1238 0/0:71,0:71:99:0,153,1591 0/0:65,0:65:99:0,165,1736 0/0:45,0:45:96.15:0,96,988 0/0:20,0:20:39.06:0,39,406 0/0:133,0:133:99:0,289,3196 0/1:34,34:68:99:681,0,710 0/1:52,41:93:99:815,0,1118 0/0:95,0:95:99:0,201,2259 0/0:33,0:33:75.09:0,75,731 0/0:45,0:45:99:0,111,1105 0/0:42,0:42:99:0,105,1077 0/0:27,0:27:54.05:0,54,504 0/0:27,0:28:54.09:0,54,580 0/0:97,0:97:99:0,222,2339 0/0:46,0:46:99:0,111,1166 0/0:21,0:21:48.07:0,48,489 0/0:37,0:37:90.15:0,90,950 0/0:23,0:23:57.09:0,57,568 0/0:87,0:87:99:0,213,2196 0/0:37,0:37:93.12:0,93,919 0/0:44,0:44:99:0,105,1067 0/0:23,0:23:60.10:0,60,625 0/0:29,0:29:60.10:0,60,636 0/0:20,0:20:45.07:0,45,466 16 21747662 . G A 494.05 . 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C G 5663.18 . 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C T 8305.38 . 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G A 1806.72 . AC=3;AF=0.036;AN=84;BaseQRankSum=-0.681;DP=1980;Dels=0.00;FS=1.562;HRun=0;HaplotypeScore=2.6953;InbreedingCoeff=-0.0370;MQ=58.97;MQ0=0;MQRankSum=-0.397;QD=10.69;ReadPosRankSum=-0.523 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,102,1208 0/0:49,0:49:99:0,129,1557 0/0:30,0:30:78.21:0,78,926 0/0:68,0:68:99:0,181,2320 0/0:91,0:91:99:0,235,3058 0/0:44,0:44:99:0,117,1522 0/0:55,0:55:99:0,147,1909 0/0:57,0:57:99:0,159,2065 0/0:32,1:33:51.09:0,51,921 0/0:38,0:38:99:0,102,1223 0/0:37,0:37:93.25:0,93,1084 0/0:33,0:34:90.23:0,90,1037 0/0:31,0:31:81.24:0,81,964 0/0:32,0:32:90.25:0,90,1057 0/0:136,0:136:99:0,343,4112 0/0:39,0:39:99:0,111,1283 0/0:46,0:46:99:0,117,1413 0/0:26,0:26:69.20:0,69,811 0/0:65,0:65:99:0,150,1784 0/0:73,0:73:99:0,187,2298 0/1:31,19:50:99:438,0,793 0/1:28,17:45:99:451,0,738 0/0:87,0:87:99:0,214,2834 0/0:44,0:44:99:0,114,1515 0/0:55,0:55:99:0,147,1966 0/0:42,0:42:99:0,108,1424 0/0:30,0:30:81.25:0,81,997 0/0:30,0:30:75.20:0,75,877 0/0:32,0:32:93.26:0,93,1080 0/0:35,0:35:96.28:0,96,1144 0/0:35,0:35:99:0,99,1163 0/1:36,38:74:99:993,0,866 0/0:41,0:41:99:0,111,1310 0/0:36,0:36:90.25:0,90,1069 0/0:31,0:31:81.22:0,81,937 0/0:44,0:44:99:0,117,1397 0/0:51,0:52:99:0,147,1689 0/0:38,0:38:99:0,105,1261 0/0:41,0:41:99:0,111,1280 0/0:46,0:46:99:0,117,1370 0/0:31,0:31:87.23:0,87,1008 0/0:39,0:40:99:0,102,1263 16 23481456 . C T 378.92 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.173;DP=2676;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.6597;InbreedingCoeff=-0.0120;MQ=59.22;MQ0=0;MQRankSum=1.243;QD=9.02;ReadPosRankSum=-1.025 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,120,1377 0/0:35,0:35:99:0,99,1116 0/0:35,0:35:96.26:0,96,1097 0/0:119,0:120:99:0,331,3975 0/0:130,0:131:99:0,358,4443 0/0:107,0:107:99:0,295,3581 0/0:74,0:74:99:0,199,2395 0/0:87,0:87:99:0,235,2870 0/0:56,0:56:99:0,159,1803 0/0:36,0:36:93.23:0,93,1040 0/0:45,0:45:99:0,123,1391 0/0:44,0:44:99:0,117,1348 0/0:26,0:26:75.20:0,75,867 0/0:32,0:32:93.25:0,93,1057 0/0:159,0:159:99:0,388,4678 0/0:38,0:38:99:0,105,1184 0/0:40,0:40:99:0,117,1283 0/0:42,0:42:99:0,117,1358 0/0:95,0:95:99:0,259,2986 0/0:97,0:98:99:0,250,2902 0/0:111,0:111:99:0,298,3401 0/0:55,0:55:99:0,153,1752 0/0:130,0:130:99:0,358,4392 0/0:74,0:74:99:0,202,2441 0/0:86,0:87:99:0,235,2891 0/0:77,0:77:99:0,205,2511 0/0:34,0:34:96.27:0,96,1130 0/0:39,0:39:99:0,108,1223 0/0:31,0:31:84.22:0,84,955 0/0:49,0:49:99:0,132,1492 0/0:40,0:40:99:0,117,1314 0/0:100,0:100:99:0,265,3071 0/0:56,0:56:99:0,156,1771 0/0:43,0:43:99:0,126,1404 0/0:39,0:39:99:0,111,1261 0/0:43,0:43:99:0,120,1399 0/0:93,0:93:99:0,262,3008 0/0:51,0:51:99:0,141,1620 0/0:48,0:48:99:0,135,1520 0/0:37,0:37:99:0,105,1180 0/1:24,18:42:99:425,0,599 0/0:52,0:52:99:0,147,1653 16 23489711 . C G 91935.94 . AC=75;AF=0.893;AN=84;BaseQRankSum=-1.006;DP=3040;Dels=0.00;FS=8.547;HRun=1;HaplotypeScore=1.7374;InbreedingCoeff=-0.1200;MQ=58.55;MQ0=0;MQRankSum=-0.497;QD=30.24;ReadPosRankSum=0.079 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1644,135,0 1/1:0,53:53:99:1817,150,0 1/1:0,22:22:63.20:787,63,0 1/1:0,162:162:99:6006,463,0 1/1:1,133:134:99:5054,358,0 1/1:0,90:90:99:3391,262,0 1/1:0,70:70:99:2700,205,0 1/1:0,87:87:99:3238,250,0 1/1:0,49:49:99:1724,141,0 1/1:0,52:53:99:1664,132,0 0/1:16,15:31:99:429,0,420 1/1:0,49:49:99:1690,138,0 1/1:0,39:39:99:1214,102,0 1/1:0,48:48:99:1663,138,0 1/1:0,211:211:99:6698,545,0 1/1:0,43:43:99:1327,105,0 0/1:25,25:50:99:733,0,740 1/1:0,39:39:99:1404,114,0 1/1:0,91:91:99:2895,238,0 1/1:0,120:120:99:3913,313,0 0/1:60,48:108:99:1205,0,1509 0/1:40,37:77:99:1049,0,1170 1/1:0,161:162:99:6018,457,0 1/1:0,82:82:99:3042,232,0 1/1:0,109:109:99:4097,316,0 1/1:0,97:97:99:3649,280,0 1/1:0,38:38:99:1251,99,0 1/1:0,47:47:99:1436,117,0 1/1:0,42:42:99:1545,126,0 1/1:0,36:36:99:1275,105,0 1/1:0,33:33:90.27:1111,90,0 0/1:68,70:138:99:1839,0,2015 1/1:0,77:77:99:2540,205,0 1/1:0,39:39:99:1300,105,0 1/1:0,59:59:99:1893,156,0 0/1:33,21:54:99:554,0,1029 0/1:51,56:108:99:1432,0,1507 0/1:25,30:55:99:844,0,631 1/1:0,56:56:99:1834,150,0 1/1:0,43:43:99:1477,120,0 0/1:14,28:42:99:825,0,390 1/1:0,49:49:99:1730,141,0 16 23607504 . G C 442.60 . AC=4;AF=0.048;AN=84;BaseQRankSum=-1.452;DP=684;Dels=0.00;FS=5.674;HRun=0;HaplotypeScore=0.8840;InbreedingCoeff=-0.0513;MQ=58.90;MQ0=0;MQRankSum=0.422;QD=8.51;ReadPosRankSum=1.575 GT:AD:DP:GQ:PL 0/0:12,0:12:30.09:0,30,373 0/0:12,0:12:33.10:0,33,415 0/0:11,0:11:30.10:0,30,392 0/0:39,0:39:99:0,105,1382 0/0:45,0:45:99:0,126,1674 0/0:34,0:34:93.30:0,93,1230 0/0:15,0:15:45.14:0,45,582 0/0:25,0:25:72.21:0,72,917 0/0:10,0:10:30.08:0,30,366 0/0:7,0:7:21.06:0,21,261 0/1:7,2:9:56.82:57,0,172 0/0:5,0:5:12.03:0,12,144 0/0:9,0:9:24.07:0,24,291 0/0:14,0:14:39.13:0,39,504 0/0:37,0:37:99:0,102,1261 0/0:12,0:12:36.11:0,36,440 0/1:9,4:13:99:103,0,299 0/0:8,0:8:24.08:0,24,302 0/0:12,0:12:36.12:0,36,461 0/0:18,0:18:51.16:0,51,634 0/0:19,0:19:48.15:0,48,608 0/0:9,0:9:27.08:0,27,330 0/0:41,0:41:99:0,120,1585 0/0:18,0:18:45.14:0,45,589 0/0:34,0:34:87.28:0,87,1172 0/0:10,0:10:24.08:0,24,321 0/0:16,0:16:39.12:0,39,480 0/0:9,0:9:24.07:0,24,291 0/0:9,0:9:27.08:0,27,325 0/0:14,0:14:39.13:0,39,503 0/0:11,0:11:33.11:0,33,422 0/0:16,0:16:45.12:0,45,549 0/0:18,0:18:51.16:0,51,637 0/0:9,0:9:27.08:0,27,329 0/0:13,0:13:39.11:0,39,468 0/0:12,0:12:36.11:0,36,439 0/1:9,7:16:99:183,0,251 0/1:8,6:14:99:186,0,257 0/0:14,0:14:42.13:0,42,509 0/0:12,0:12:33.09:0,33,398 0/0:9,0:9:27.08:0,27,331 0/0:14,0:14:42.11:0,42,501 16 23607510 . G A 153.06 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.518;DP=618;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7561;InbreedingCoeff=-0.0138;MQ=58.88;MQ0=0;MQRankSum=0.309;QD=17.01;ReadPosRankSum=0.361 GT:AD:DP:GQ:PL 0/0:11,0:11:27.08:0,27,331 0/0:11,0:11:33.10:0,33,388 0/0:12,0:12:33.09:0,33,387 0/0:34,0:34:96.29:0,96,1219 0/0:42,0:42:99:0,117,1482 0/0:26,0:26:75.21:0,75,958 0/0:15,0:15:45.13:0,45,554 0/0:22,0:22:60.19:0,60,770 0/0:10,0:10:30.08:0,30,350 0/0:6,0:6:15.04:0,15,179 0/0:9,0:9:21.07:0,21,274 0/0:6,0:6:15.04:0,15,178 0/1:2,7:9:48.16:199,0,48 0/0:13,0:13:36.09:0,36,427 0/0:33,0:34:93.22:0,93,1063 0/0:10,0:10:27.07:0,27,316 0/0:11,0:11:33.10:0,33,393 0/0:6,0:6:15.05:0,15,188 0/0:10,0:10:30.09:0,30,360 0/0:16,0:16:42.13:0,42,509 0/0:16,0:16:39.12:0,39,472 0/0:8,0:8:21.06:0,21,246 0/0:40,0:40:99:0,117,1459 0/0:14,0:14:36.11:0,36,467 0/0:30,1:31:60.54:0,61,1013 0/0:12,0:12:27.08:0,27,335 0/0:14,0:14:42.12:0,42,497 0/0:8,0:8:21.06:0,21,251 0/0:7,0:7:21.06:0,21,238 0/0:11,0:11:33.10:0,33,398 0/0:9,0:9:27.09:0,27,339 0/0:16,0:16:45.13:0,45,546 0/0:12,0:12:36.10:0,36,448 0/0:9,0:9:27.06:0,27,302 0/0:14,0:14:42.12:0,42,479 0/0:10,0:10:30.06:0,30,345 0/0:17,0:17:45.10:0,45,521 0/0:13,0:13:36.09:0,36,407 0/0:14,0:14:39.10:0,39,456 0/0:12,0:12:33.09:0,33,395 0/0:7,0:7:21.06:0,21,235 0/0:11,0:11:33.10:0,33,390 16 23701301 . G C 10.91 . AC=1;AF=0.012;AN=84;BaseQRankSum=-10.945;DP=2292;Dels=0.00;FS=50.969;HRun=2;HaplotypeScore=1.4925;InbreedingCoeff=-0.0182;MQ=58.94;MQ0=0;MQRankSum=-0.350;QD=0.21;ReadPosRankSum=-7.649 GT:AD:DP:GQ:PL 0/0:35,5:40:78.07:0,78,891 0/0:35,4:39:63.54:0,64,990 0/0:26,6:32:39.41:0,39,672 0/0:119,11:131:99:0,256,3071 0/0:99,17:116:99:0,211,2560 0/0:91,9:100:99:0,162,2371 0/0:78,7:86:99:0,190,2382 0/0:66,8:74:99:0,162,1952 0/0:37,2:39:87.21:0,87,993 0/0:27,4:31:63.11:0,63,673 0/0:37,3:40:56.19:0,56,972 0/0:31,4:35:78.15:0,78,887 0/0:37,5:42:93.12:0,93,1067 0/0:22,5:27:51.11:0,51,591 0/0:107,16:125:99:0,253,2933 0/0:29,4:33:44.52:0,45,787 0/0:35,4:39:84.20:0,84,964 0/0:30,5:35:40.61:0,41,788 0/0:48,12:61:87.62:0,88,1279 0/0:76,3:81:99:0,168,2037 0/0:51,9:61:75.03:0,75,1336 0/0:42,3:45:93.27:0,93,1129 0/0:115,16:131:99:0,225,2935 0/0:42,5:47:96.27:0,96,1164 0/0:85,4:90:99:0,189,2313 0/0:70,4:74:99:0,168,2025 0/0:24,6:30:54.12:0,54,598 0/0:41,4:45:95.39:0,95,1032 0/0:30,4:34:75.22:0,75,890 0/0:25,4:29:0.01:0,0,575 0/0:29,4:33:69.18:0,69,817 0/0:92,5:99:99:0,217,2559 0/0:52,4:56:99:0,129,1447 0/0:20,3:23:22.56:0,23,543 0/0:37,6:43:84.23:0,84,988 0/0:23,5:28:51.14:0,51,592 0/1:38,13:51:56.65:57,0,753 0/0:36,4:40:84.18:0,84,951 0/0:36,3:39:84.18:0,84,948 0/0:27,2:29:60.18:0,60,738 0/0:18,1:19:42.12:0,42,494 0/0:37,3:40:65.48:0,65,969 16 23702233 . G A 1248.97 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.261;DP=1527;Dels=0.00;FS=0.571;HRun=0;HaplotypeScore=0.8506;InbreedingCoeff=-0.0244;MQ=57.94;MQ0=0;MQRankSum=-1.188;QD=16.88;ReadPosRankSum=1.666 GT:AD:DP:GQ:PL 0/0:33,0:33:87.19:0,87,954 0/0:34,0:34:93.22:0,93,1038 0/0:16,0:16:48.12:0,48,520 0/0:74,0:74:99:0,208,2508 0/0:64,0:64:99:0,178,2201 0/0:47,0:47:99:0,120,1466 0/0:43,0:43:99:0,114,1356 0/0:48,0:48:99:0,135,1655 0/0:34,0:34:93.25:0,93,1046 0/0:28,0:28:75.18:0,75,840 0/0:24,0:24:63.17:0,63,720 0/0:24,0:24:72.13:0,72,772 0/0:18,0:18:54.11:0,54,581 0/0:33,0:33:90.17:0,90,972 0/0:81,0:81:99:0,214,2421 0/0:38,0:38:99:0,99,1125 0/0:38,0:38:99:0,114,1270 0/0:22,0:22:63.17:0,63,713 0/0:45,0:45:99:0,129,1455 0/0:41,0:41:99:0,114,1264 0/0:34,0:34:87.19:0,87,976 0/0:33,0:33:87.24:0,87,1010 0/0:86,0:86:99:0,232,2866 0/0:31,0:31:81.25:0,81,1022 0/0:37,0:37:99:0,102,1218 0/0:26,0:26:72.21:0,72,880 0/0:28,0:28:75.19:0,75,864 0/0:29,0:29:81.19:0,81,878 0/0:16,0:16:48.12:0,48,530 0/0:35,0:35:99:0,99,1122 0/0:27,0:27:78.21:0,78,914 0/0:51,0:51:99:0,132,1556 0/0:28,0:28:78.20:0,78,867 0/0:39,0:39:99:0,108,1193 0/0:24,0:24:63.15:0,63,707 0/0:30,0:30:78.20:0,78,890 0/1:11,38:49:99:1083,0,213 0/1:16,9:25:99:228,0,417 0/0:25,0:25:63.17:0,63,707 0/0:32,0:32:93.23:0,93,1053 0/0:28,0:28:72.18:0,72,805 0/0:29,0:29:84.21:0,84,955 16 23702246 . G C 444.28 . 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C A 10782.33 . 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G A 11284.54 . 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T C 1644.48 . 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A C 22222.31 . 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C T 534.86 . 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C T 7531.52 . 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A C 1370.06 . AC=26;AF=0.310;AN=84;BaseQRankSum=-23.254;DP=2255;Dels=0.00;FS=1523.440;HRun=2;HaplotypeScore=1.5220;InbreedingCoeff=-0.4569;MQ=58.51;MQ0=0;MQRankSum=6.274;QD=0.92;ReadPosRankSum=-19.017 GT:AD:DP:GQ:PL 0/1:23,17:40:93.04:93,0,688 0/0:29,16:45:37.85:0,38,925 0/0:24,18:42:14.98:0,15,698 0/1:53,48:101:69.66:70,0,1638 0/1:46,48:94:18.15:18,0,1409 0/1:30,25:55:8.88:9,0,892 0/1:37,34:71:72.06:72,0,983 0/1:31,38:69:51.17:51,0,919 0/1:22,10:32:50.39:50,0,648 0/0:21,9:30:33.55:0,34,677 0/0:27,15:42:16.95:0,17,892 0/0:24,9:33:6.91:0,7,766 0/0:25,9:34:14.81:0,15,735 0/1:28,16:44:7.29:7,0,829 0/1:90,58:148:76.25:76,0,2691 0/0:27,16:43:81.24:0,81,971 0/1:18,9:27:1.32:1,0,547 0/0:28,13:41:2.80:0,3,927 0/1:40,21:61:54.81:55,0,1191 0/0:64,24:88:99:0,158,2150 0/1:43,20:63:90.72:91,0,1392 0/1:30,17:47:8.22:8,0,938 0/1:55,47:102:99:123,0,1727 0/1:31,26:57:25.34:25,0,884 0/0:46,39:85:0.39:0,0,1233 0/1:31,34:66:99:233,0,969 0/1:21,12:33:16.41:16,0,680 0/0:22,10:32:12:0,12,734 0/1:24,15:39:55.79:56,0,698 0/1:22,9:31:16.39:16,0,696 0/0:35,15:51:67.92:0,68,1117 0/0:49,26:75:38.67:0,39,1484 0/1:34,27:61:39.02:39,0,864 0/1:21,18:40:99:107,0,677 0/1:24,14:38:37.10:37,0,789 0/1:27,18:45:58.40:58,0,722 0/1:46,19:65:97.33:97,0,1371 0/0:21,15:36:35.61:0,36,733 0/1:26,14:40:89.07:89,0,808 0/0:32,13:45:9.59:0,10,1021 0/1:13,9:22:40.70:41,0,381 0/0:28,13:42:53.71:0,54,911 16 27448995 . C T 477.83 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.136;DP=1278;Dels=0.00;FS=1.889;HRun=1;HaplotypeScore=0.8579;InbreedingCoeff=-0.0120;MQ=59.27;MQ0=0;MQRankSum=1.186;QD=17.70;ReadPosRankSum=-1.441 GT:AD:DP:GQ:PL 0/0:27,0:27:72.19:0,72,866 0/0:17,0:17:51.16:0,51,651 0/1:9,18:27:99:524,0,260 0/0:34,0:34:96.29:0,96,1264 0/0:40,0:40:99:0,117,1531 0/0:21,0:21:63.20:0,63,831 0/0:33,0:33:87.28:0,87,1179 0/0:20,0:20:60.18:0,60,772 0/0:35,0:35:99:0,105,1329 0/0:26,0:26:72.22:0,72,908 0/0:29,0:29:78.23:0,78,965 0/0:19,0:19:57.18:0,57,724 0/0:22,0:22:66.19:0,66,806 0/0:24,0:24:72.21:0,72,891 0/0:99,0:99:99:0,271,3405 0/0:18,0:18:51.16:0,51,657 0/0:20,0:20:51.16:0,51,645 0/0:31,0:31:81.26:0,81,1039 0/0:38,0:38:99:0,105,1245 0/0:56,0:56:99:0,153,1929 0/0:49,0:49:99:0,141,1730 0/0:31,0:31:93.29:0,93,1181 0/0:39,0:40:99:0,114,1545 0/0:22,0:22:60.20:0,60,809 0/0:41,0:41:99:0,111,1472 0/0:30,0:30:87.29:0,87,1180 0/0:33,0:34:93.29:0,93,1173 0/0:23,1:24:69.21:0,69,866 0/0:25,0:25:72.22:0,72,900 0/0:20,1:21:60.19:0,60,761 0/0:22,0:22:66.20:0,66,840 0/0:38,0:38:99:0,108,1384 0/0:25,0:25:72.23:0,72,920 0/0:30,0:30:90.25:0,90,1099 0/0:21,0:21:63.19:0,63,791 0/0:24,0:24:63.18:0,63,787 0/0:40,0:40:99:0,111,1357 0/0:24,0:24:57.18:0,57,724 0/0:29,0:29:75.21:0,75,910 0/0:26,0:26:72.23:0,72,924 0/0:24,0:24:69.22:0,69,882 0/0:22,0:22:66.18:0,66,806 16 27455867 . C T 780.15 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.528;DP=1340;Dels=0.00;FS=0.949;HRun=0;HaplotypeScore=0.7747;InbreedingCoeff=-0.0244;MQ=59.21;MQ0=0;MQRankSum=-0.299;QD=19.03;ReadPosRankSum=0.723 GT:AD:DP:GQ:PL 0/0:14,0:14:42.13:0,42,518 0/0:21,0:21:54.15:0,54,633 0/0:17,0:17:45.13:0,45,547 0/0:59,0:59:99:0,169,2207 0/0:69,0:69:99:0,202,2652 0/0:45,0:45:99:0,129,1693 0/0:48,0:48:99:0,126,1648 0/0:46,0:46:99:0,129,1698 0/0:19,0:19:48.15:0,48,610 0/0:22,0:22:57.18:0,57,725 0/0:14,0:14:39.11:0,39,468 0/1:6,20:26:99:622,0,121 0/1:8,7:15:99:220,0,238 0/0:21,0:21:63.19:0,63,762 0/0:64,0:64:99:0,187,2241 0/0:23,0:24:60.15:0,60,743 0/0:29,0:29:84.22:0,84,993 0/0:26,0:26:72.22:0,72,881 0/0:38,0:39:99:0,105,1299 0/0:53,0:54:99:0,144,1786 0/0:47,0:47:99:0,126,1551 0/0:40,0:41:99:0,105,1246 0/0:54,0:54:99:0,153,2039 0/0:36,0:36:96.27:0,96,1203 0/0:39,0:39:99:0,114,1492 0/0:35,0:35:96.31:0,96,1272 0/0:15,0:15:45.13:0,45,545 0/0:27,0:27:75.22:0,75,913 0/0:21,0:21:54.17:0,54,665 0/0:19,0:19:48.13:0,48,600 0/0:21,0:22:60.16:0,60,702 0/0:39,0:39:99:0,108,1351 0/0:34,0:34:96.28:0,96,1187 0/0:37,0:37:99:0,102,1225 0/0:27,0:27:78.23:0,78,937 0/0:26,0:27:72.21:0,72,870 0/0:41,0:42:99:0,108,1300 0/0:24,0:24:63.17:0,63,781 0/0:24,0:24:72.20:0,72,845 0/0:16,0:16:42.13:0,42,518 0/0:13,0:13:39.12:0,39,477 0/0:29,0:29:81.23:0,81,970 16 27500491 . C T 647.99 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.327;DP=4228;DS;Dels=0.00;FS=3.690;HRun=0;HaplotypeScore=3.1187;InbreedingCoeff=-0.0120;MQ=59.28;MQ0=0;MQRankSum=-1.168;QD=10.62;ReadPosRankSum=-0.221 GT:AD:DP:GQ:PL 0/0:81,0:81:99:0,220,2487 0/0:97,0:97:99:0,238,2803 0/0:66,0:66:99:0,165,1931 0/0:180,0:180:99:0,487,5820 0/0:148,0:148:99:0,382,4661 0/0:91,0:91:99:0,247,3002 0/0:101,0:101:99:0,253,3046 0/0:124,1:125:99:0,280,3796 0/0:55,0:55:99:0,153,1745 0/0:75,0:75:99:0,199,2301 0/0:75,0:75:99:0,208,2357 0/0:71,0:71:99:0,195,2137 0/0:65,0:65:99:0,171,1934 0/0:80,0:80:99:0,205,2350 0/0:250,0:250:99:0,611,7158 0/0:52,0:52:99:0,144,1610 0/0:99,0:99:99:0,253,2911 0/0:73,0:73:99:0,180,2074 0/0:128,0:129:99:0,319,3679 0/0:159,0:159:99:0,412,4833 0/0:158,0:158:99:0,385,4454 0/0:114,0:114:99:0,289,3372 0/0:172,0:172:99:0,451,5515 0/0:96,0:97:99:0,244,2970 0/0:98,0:98:99:0,247,3022 0/0:99,0:99:99:0,265,3180 0/0:81,0:81:99:0,208,2404 0/0:61,0:61:99:0,156,1804 0/0:65,0:65:99:0,174,2004 0/0:78,0:78:99:0,205,2341 0/0:84,0:84:99:0,223,2560 0/0:161,0:161:99:0,403,4807 0/0:105,0:105:99:0,271,3075 0/0:89,0:89:99:0,226,2554 0/0:78,0:78:99:0,199,2287 0/0:87,0:87:99:0,235,2641 0/0:177,0:177:99:0,421,4938 0/0:78,0:78:99:0,217,2451 0/0:66,0:67:99:0,165,1881 0/0:72,0:73:99:0,192,2167 0/1:33,28:61:99:694,0,807 0/0:72,0:72:99:0,186,2096 16 27781309 . G A 7302.42 . AC=7;AF=0.083;AN=84;BaseQRankSum=1.078;DP=3837;DS;Dels=0.00;FS=0.812;HRun=0;HaplotypeScore=3.5879;InbreedingCoeff=0.5325;MQ=59.19;MQ0=0;MQRankSum=0.660;QD=20.28;ReadPosRankSum=-0.920 GT:AD:DP:GQ:PL 0/1:44,30:74:99:718,0,1255 0/0:71,0:71:99:0,189,2181 0/0:69,0:69:99:0,184,2222 0/0:165,0:165:99:0,457,5585 0/0:152,0:152:99:0,403,5055 0/0:151,0:151:99:0,409,5092 0/0:123,0:123:99:0,334,4091 0/0:141,0:141:99:0,379,4754 0/0:70,0:70:99:0,193,2262 0/0:54,0:54:99:0,150,1792 0/0:63,0:63:99:0,168,1993 0/0:56,0:57:99:0,156,1824 0/0:49,0:49:99:0,135,1569 0/0:75,0:75:99:0,211,2416 0/0:185,0:185:99:0,478,5729 0/0:78,0:78:99:0,211,2486 0/1:31,30:61:99:823,0,802 0/0:53,0:53:99:0,150,1791 0/0:109,0:109:99:0,289,3396 0/0:165,1:166:99:0,439,5350 0/0:97,0:97:99:0,268,3122 0/0:82,0:82:99:0,235,2794 0/0:198,0:198:99:0,539,6769 0/0:107,0:107:99:0,283,3556 0/0:146,0:146:99:0,382,4776 0/0:112,0:112:99:0,295,3734 0/0:59,0:59:99:0,150,1806 0/0:61,0:61:99:0,165,1933 0/0:52,0:52:99:0,144,1712 0/0:57,0:57:99:0,165,1881 0/0:59,0:59:99:0,162,1884 0/0:129,0:129:99:0,337,4077 0/0:104,0:104:99:0,292,3466 0/0:58,0:58:99:0,165,1920 0/0:63,0:63:99:0,174,2005 0/0:73,0:73:99:0,193,2240 1/1:2,96:98:99:3070,250,0 0/1:35,34:69:99:937,0,717 1/1:2,56:58:99:1754,115,0 0/0:78,0:78:99:0,187,2268 0/0:46,0:46:99:0,126,1487 0/0:65,0:65:99:0,162,1925 16 27789047 . C T 704.32 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.306;DP=3086;Dels=0.00;FS=7.936;HRun=0;HaplotypeScore=2.0067;InbreedingCoeff=-0.0120;MQ=59.03;MQ0=0;MQRankSum=0.290;QD=13.29;ReadPosRankSum=0.193 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,156,1820 0/0:61,0:62:99:0,171,1985 0/0:58,0:58:99:0,162,1906 0/0:154,0:154:99:0,430,5323 0/0:150,0:150:99:0,424,5190 0/0:98,1:100:99:0,271,3298 0/0:78,0:78:99:0,217,2637 0/0:108,0:108:99:0,298,3674 0/0:67,0:67:99:0,178,2100 0/0:47,0:47:99:0,126,1497 0/0:56,0:56:99:0,159,1833 0/0:49,0:49:99:0,144,1700 0/0:35,0:35:99:0,99,1166 0/0:63,0:63:99:0,183,2105 0/0:161,0:162:99:0,424,5063 0/0:81,0:81:99:0,223,2645 0/0:44,0:44:99:0,108,1307 0/0:44,0:44:99:0,126,1446 0/0:67,0:67:99:0,186,2171 0/0:113,0:113:99:0,301,3607 0/0:80,0:80:99:0,217,2596 0/0:57,0:57:99:0,150,1781 0/0:148,0:148:99:0,415,5042 0/0:90,0:91:99:0,247,3028 0/0:87,0:87:99:0,238,2954 0/0:81,0:81:99:0,214,2586 0/0:35,0:35:99:0,99,1199 0/0:49,0:49:99:0,135,1588 0/0:50,0:50:99:0,141,1665 0/0:53,0:53:99:0,150,1782 0/1:27,26:53:99:751,0,732 0/0:101,0:101:99:0,283,3361 0/0:66,0:67:99:0,177,2090 0/0:56,0:56:99:0,150,1751 0/0:52,0:52:99:0,144,1691 0/0:67,0:67:99:0,178,2165 0/0:74,0:74:99:0,199,2330 0/0:57,0:57:99:0,135,1625 0/0:57,0:57:99:0,159,1848 0/0:68,0:68:99:0,193,2247 0/0:45,0:45:99:0,123,1444 0/0:63,0:63:99:0,177,2091 16 27974487 . T C 19354.46 . AC=39;AF=0.464;AN=84;BaseQRankSum=-5.456;DP=1566;Dels=0.00;FS=0.786;HRun=0;HaplotypeScore=0.7924;InbreedingCoeff=-0.1009;MQ=59.24;MQ0=0;MQRankSum=-0.430;QD=17.16;ReadPosRankSum=-0.721 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1342,108,0 1/1:0,29:29:81.22:934,81,0 0/1:25,17:42:99:376,0,718 1/1:0,32:32:87.28:1113,87,0 1/1:0,41:41:99:1312,99,0 0/0:39,0:39:90.28:0,90,1170 0/0:37,0:37:90.28:0,90,1154 0/0:42,0:42:99:0,105,1332 0/0:35,0:36:96.29:0,96,1142 0/1:16,11:27:99:300,0,377 0/0:20,0:20:51.16:0,51,635 0/1:16,16:32:99:410,0,423 0/1:12,9:21:99:182,0,343 0/1:14,12:26:99:312,0,430 1/1:0,92:92:99:2891,241,0 1/1:0,27:27:72.21:856,72,0 0/1:18,11:29:99:297,0,469 0/1:12,15:27:99:346,0,312 0/1:35,38:73:99:991,0,952 0/1:39,32:71:99:781,0,1047 0/0:51,0:51:99:0,123,1530 0/1:20,13:33:99:332,0,480 0/1:28,25:53:99:618,0,794 0/0:48,0:48:99:0,111,1435 0/0:39,0:39:96.30:0,96,1227 0/1:17,11:28:99:265,0,426 0/1:17,13:30:99:357,0,424 0/1:20,14:34:99:367,0,509 1/1:0,29:29:72.21:862,72,0 1/1:0,20:20:51.15:627,51,0 0/1:11,12:23:99:319,0,303 0/0:66,0:66:99:0,169,2105 0/1:25,16:41:99:339,0,751 0/0:25,0:25:63.20:0,63,789 0/1:10,24:34:99:578,0,249 0/1:12,13:25:99:378,0,311 0/1:33,26:60:99:579,0,916 0/1:8,13:21:99:343,0,226 0/1:15,10:25:99:255,0,421 0/1:20,17:37:99:408,0,588 0/1:11,11:22:99:283,0,296 0/0:34,1:35:61.94:0,62,1103 16 28145165 . T A 294.01 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.947;DP=1332;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7137;InbreedingCoeff=-0.0120;MQ=58.30;MQ0=0;MQRankSum=-0.028;QD=14.70;ReadPosRankSum=-1.567 GT:AD:DP:GQ:PL 0/0:25,0:25:63.17:0,63,733 0/0:15,0:15:45.13:0,45,531 0/1:9,11:20:99:340,0,253 0/0:47,0:47:99:0,120,1466 0/0:51,0:51:99:0,141,1699 0/0:28,0:28:72.20:0,72,874 0/0:28,0:28:78.23:0,78,927 0/0:40,0:41:99:0,99,1216 0/0:16,0:16:48.13:0,48,553 0/0:26,0:26:66.20:0,66,811 0/0:26,0:26:72.20:0,72,848 0/0:22,0:22:60.17:0,60,712 0/0:28,0:28:75.22:0,75,896 0/0:21,0:21:63.19:0,63,738 0/0:100,0:101:99:0,247,2992 0/0:20,0:20:54.16:0,54,640 0/0:29,0:29:81.24:0,81,955 0/0:23,0:23:66.20:0,66,778 0/0:42,0:42:99:0,114,1354 0/0:49,0:49:99:0,126,1537 0/0:43,0:44:99:0,117,1369 0/0:33,0:33:93.27:0,93,1078 0/0:46,0:46:99:0,129,1507 0/0:17,0:17:45.13:0,45,523 0/0:33,0:33:90.25:0,90,1066 0/0:38,0:38:99:0,108,1282 0/0:29,0:29:78.23:0,78,946 0/0:23,0:23:69.20:0,69,803 0/0:27,0:27:63.18:0,63,766 0/0:23,0:23:63.18:0,63,753 0/0:34,0:34:87.27:0,87,1083 0/0:45,0:46:99:0,117,1420 0/0:43,0:43:99:0,108,1277 0/0:25,0:25:69.20:0,69,813 0/0:29,0:29:84.24:0,84,986 0/0:29,0:29:75.22:0,75,889 0/0:36,0:38:99:0,105,1225 0/0:26,0:26:72.22:0,72,869 0/0:16,0:16:48.09:0,48,533 0/0:21,0:21:63.19:0,63,748 0/0:26,0:26:69.20:0,69,820 0/0:28,0:28:84.25:0,84,998 16 28145236 . G C 6.02 . AC=3;AF=0.036;AN=84;BaseQRankSum=-13.218;DP=1275;Dels=0.00;FS=209.327;HRun=2;HaplotypeScore=0.7713;InbreedingCoeff=-0.0538;MQ=58.53;MQ0=0;MQRankSum=0.794;QD=0.07;ReadPosRankSum=-11.139 GT:AD:DP:GQ:PL 0/0:23,4:27:54.09:0,54,581 0/0:21,6:27:54.09:0,54,565 0/0:28,5:33:78.19:0,78,841 0/0:36,15:51:91.46:0,91,1005 0/1:25,16:41:36.38:36,0,666 0/0:18,2:21:42.11:0,42,476 0/0:18,2:20:33.10:0,33,390 0/0:22,6:28:32.13:0,32,374 0/0:19,4:23:45.10:0,45,481 0/0:18,4:22:38.32:0,38,414 0/0:19,6:25:53.63:0,54,569 0/0:17,6:23:45.11:0,45,487 0/0:28,8:36:32.87:0,33,782 0/0:20,2:22:51.12:0,51,557 0/0:88,17:105:99:0,194,2232 0/0:25,9:34:25.80:0,26,597 0/0:28,8:36:36.65:0,37,689 0/1:11,4:15:25.19:25,0,255 0/0:40,7:47:69.75:0,70,1032 0/0:50,5:55:99:0,125,1348 0/0:38,6:44:99:0,99,1077 0/0:18,8:26:43.91:0,44,452 0/0:30,15:45:41.50:0,41,729 0/0:11,3:14:27.06:0,27,322 0/0:23,9:32:21.13:0,21,428 0/0:21,4:25:25.39:0,25,482 0/0:23,6:29:25.79:0,26,584 0/1:22,8:30:15.51:16,0,583 0/0:15,1:16:39.03:0,39,379 0/0:17,6:23:41.14:0,41,429 0/0:15,4:19:39.08:0,39,415 0/0:49,4:53:99:0,102,1264 0/0:26,8:34:1.05:0,1,539 0/0:8,4:12:18.01:0,18,173 0/0:16,4:20:42.05:0,42,429 0/0:17,9:26:16.97:0,17,385 0/0:26,5:31:69.16:0,69,735 0/0:18,3:21:8.07:0,8,381 0/0:15,2:17:1.68:3,0,373 0/0:14,4:18:30.08:0,30,338 0/0:19,5:24:51.05:0,51,526 0/0:21,4:25:21.40:0,21,471 16 28488943 . T C 1729.33 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.051;DP=3425;Dels=0.00;FS=7.683;HRun=0;HaplotypeScore=1.8533;InbreedingCoeff=-0.0244;MQ=59.23;MQ0=0;MQRankSum=0.598;QD=9.50;ReadPosRankSum=-1.422 GT:AD:DP:GQ:PL 0/0:57,0:59:99:0,162,1918 0/0:50,0:51:99:0,144,1650 0/0:43,0:43:99:0,123,1444 0/0:220,1:222:99:0,596,6989 0/0:179,0:179:99:0,505,5895 0/0:124,0:125:99:0,349,4142 0/0:97,0:98:99:0,256,3107 0/0:124,0:125:99:0,325,3909 0/0:45,0:45:99:0,120,1429 0/0:47,1:48:99:0,132,1546 0/0:50,0:50:99:0,135,1580 0/0:54,2:56:99:0,150,1782 0/0:53,0:54:99:0,138,1649 0/0:55,0:56:99:0,150,1760 0/0:188,1:193:99:0,484,5830 0/0:63,0:64:99:0,180,2045 0/0:55,0:55:99:0,156,1853 0/0:49,0:49:99:0,147,1717 0/0:98,2:100:99:0,271,3222 0/0:122,0:124:99:0,337,4042 0/0:108,0:112:99:0,283,3436 0/0:66,1:68:99:0,193,2237 0/0:216,0:217:99:0,590,6920 0/1:46,31:77:99:783,0,1240 0/1:66,39:105:99:1009,0,1890 0/0:94,0:96:99:0,262,3096 0/0:42,0:42:99:0,114,1337 0/0:53,1:55:99:0,147,1732 0/0:49,0:50:99:0,132,1576 0/0:59,0:60:99:0,165,1895 0/0:39,1:40:99:0,108,1276 0/0:92,0:92:99:0,256,3056 0/0:83,0:84:99:0,226,2618 0/0:48,0:49:99:0,141,1689 0/0:60,0:60:99:0,162,1922 0/0:55,1:56:99:0,122,1812 0/0:85,0:87:99:0,235,2698 0/0:52,0:54:99:0,141,1640 0/0:63,0:63:99:0,183,2146 0/0:50,0:50:99:0,129,1536 0/0:55,1:56:99:0,159,1875 0/0:55,0:55:99:0,150,1798 16 28549508 . G A 3334.87 . AC=4;AF=0.048;AN=84;BaseQRankSum=-5.716;DP=3832;DS;Dels=0.00;FS=10.479;HRun=0;HaplotypeScore=2.3896;InbreedingCoeff=-0.0500;MQ=59.25;MQ0=0;MQRankSum=1.208;QD=12.58;ReadPosRankSum=-2.240 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,141,1802 0/1:45,32:77:99:850,0,1350 0/1:28,28:56:99:775,0,850 0/0:146,0:146:99:0,421,5583 0/0:143,1:144:99:0,374,5411 0/0:104,0:105:99:0,292,3870 0/0:101,0:101:99:0,289,3815 0/0:90,0:90:99:0,262,3498 0/0:52,0:52:99:0,153,1930 0/0:49,0:49:99:0,147,1860 0/0:79,0:79:99:0,223,2821 0/0:66,0:66:99:0,181,2240 0/0:51,0:51:99:0,144,1818 0/0:67,0:67:99:0,184,2311 0/0:212,0:213:99:0,548,6979 0/0:86,0:86:99:0,247,3122 0/0:73,1:74:99:0,172,2531 0/1:34,19:54:99:526,0,1058 0/0:158,0:159:99:0,430,5390 0/0:140,0:140:99:0,367,4705 0/0:137,0:138:99:0,370,4582 0/0:90,0:90:99:0,241,3006 0/0:188,0:188:99:0,524,6977 0/0:95,0:95:99:0,265,3497 0/0:118,1:119:99:0,313,4172 0/1:40,38:78:99:1183,0,1243 0/0:54,0:54:99:0,150,1908 0/0:74,0:74:99:0,205,2584 0/0:68,0:69:99:0,193,2424 0/0:53,0:53:99:0,147,1862 0/0:75,1:76:99:0,180,2668 0/0:147,0:147:99:0,394,4964 0/0:88,0:88:99:0,250,3136 0/0:76,0:76:99:0,223,2757 0/0:79,1:80:99:0,180,2642 0/0:73,0:73:99:0,205,2610 0/0:147,0:147:99:0,391,4943 0/0:74,0:74:99:0,205,2559 0/0:61,0:61:99:0,175,2165 0/0:59,0:59:99:0,165,1996 0/0:51,0:51:99:0,150,1880 0/0:78,0:78:99:0,214,2650 16 28843609 . T TC 1471.14 . AC=29;AF=0.345;AN=84;BaseQRankSum=-5.030;DP=2815;FS=1220.595;HRun=1;HaplotypeScore=211.5811;InbreedingCoeff=-0.5270;MQ=57.40;MQ0=0;MQRankSum=0.876;QD=0.86;ReadPosRankSum=-16.989 GT:AD:DP:GQ:PL 0/1:50,0:50:4.48:4,0,840 0/0:48,0:48:83.10:0,83,1005 0/1:40,0:40:83.02:83,0,597 0/1:147,0:147:99:173,0,2454 0/0:139,0:139:41.04:0,41,2475 0/0:107,0:105:78.66:0,79,1742 0/0:82,0:79:78.64:0,79,1589 0/1:72,0:69:33.76:34,0,1333 0/1:52,0:52:69.16:69,0,705 0/1:59,0:59:6.77:7,0,1106 0/1:43,0:43:18.97:19,0,713 0/1:54,0:54:99:178,0,527 0/0:32,0:32:5.41:0,5,726 0/1:38,0:38:28.52:29,0,533 0/0:172,0:172:6.72:0,7,2931 0/1:53,0:53:36.84:37,0,723 0/1:41,0:41:32.48:32,0,859 0/0:46,0:46:8.25:0,8,694 0/1:77,0:77:54.61:55,0,1080 0/0:97,0:97:99:0,104,1667 0/1:89,0:89:55.35:55,0,1506 0/1:53,0:53:27.48:27,0,855 0/1:136,0:136:99:100,0,2138 0/1:72,0:71:2.42:2,0,1172 0/0:80,0:80:19.54:0,20,1354 0/0:65,0:65:37.48:0,37,1349 0/1:44,0:44:22.39:22,0,638 0/1:48,0:48:24.51:25,0,650 0/1:52,0:52:99:159,0,537 0/1:37,15:52:8.62:9,0,824 0/1:51,0:51:99:113,0,809 0/0:89,0:89:55.03:0,55,1906 0/0:52,0:52:2.98:0,0,670 0/1:51,0:51:66.92:67,0,978 0/1:39,0:39:12.95:13,0,624 0/1:47,0:47:50.08:50,0,858 0/0:88,0:88:65.64:0,66,1479 0/1:47,0:47:91.73:92,0,532 0/1:61,0:61:99:131,0,721 0/1:50,0:50:15.76:16,0,761 0/1:43,0:43:36.26:36,0,716 0/1:57,0:57:14.85:15,0,839 16 28843611 . G C 1526.96 . AC=26;AF=0.310;AN=84;BaseQRankSum=-12.860;DP=2626;Dels=0.00;FS=1108.990;HRun=1;HaplotypeScore=1.6783;InbreedingCoeff=-0.4492;MQ=58.19;MQ0=0;MQRankSum=-1.037;QD=0.98;ReadPosRankSum=-16.143 GT:AD:DP:GQ:PL 0/1:31,17:48:47.19:47,0,802 0/0:32,13:45:84.23:0,84,979 0/1:22,13:35:71.09:71,0,587 0/1:81,58:139:99:179,0,2535 0/0:84,50:135:71.06:0,71,2705 0/0:62,39:101:76.66:0,77,1883 0/0:53,25:79:75.71:0,76,1632 0/1:49,23:72:28.96:29,0,1434 0/1:24,22:46:65.06:65,0,699 0/1:36,20:56:46.72:47,0,992 0/0:28,11:39:41.50:0,41,784 0/1:26,24:50:99:186,0,564 0/0:27,7:34:13.22:0,13,774 0/1:23,15:39:30.04:30,0,630 0/1:102,52:155:17.66:18,0,2917 0/1:28,24:52:64.58:65,0,664 0/1:30,10:40:45.25:45,0,823 0/1:24,17:41:34.04:34,0,624 0/1:48,23:71:99:111,0,1239 0/0:63,31:94:57.69:0,58,1633 0/1:54,26:82:56.53:57,0,1375 0/1:32,21:53:27.85:28,0,892 0/1:73,49:122:99:137,0,2311 0/0:44,22:66:21.16:0,21,1223 0/0:43,31:75:95.14:0,95,1470 0/0:42,17:59:30.51:0,31,1367 0/1:25,15:41:15.18:15,0,691 0/0:25,18:43:27.53:0,28,688 0/1:26,24:50:99:141,0,585 0/0:38,2:40:90.26:0,90,1084 0/1:29,18:48:81.46:81,0,674 0/0:67,19:86:34.67:0,35,1785 0/1:24,23:47:22.65:23,0,588 0/1:31,16:47:37.91:38,0,874 0/1:21,16:37:37.65:38,0,604 0/0:30,17:47:21.50:0,22,822 0/0:49,23:75:15.44:0,15,1437 0/1:23,18:41:80.32:80,0,578 0/1:27,29:56:70.50:70,0,754 0/1:28,15:43:23.15:23,0,788 0/0:28,14:42:21.02:0,21,661 0/1:33,20:55:49.13:49,0,741 16 28922498 . G C 69.34 . AC=10;AF=0.119;AN=84;BaseQRankSum=-7.107;DP=793;Dels=0.00;FS=143.329;HRun=3;HaplotypeScore=0.6966;InbreedingCoeff=-0.1965;MQ=57.52;MQ0=0;MQRankSum=1.403;QD=0.43;ReadPosRankSum=-6.219 GT:AD:DP:GQ:PL 0/0:13,5:18:28.62:0,29,314 0/0:17,1:18:39.11:0,39,468 0/0:8,4:12:18.03:0,18,195 0/0:15,9:24:24.07:0,24,303 0/0:16,11:27:16.44:0,16,480 0/0:11,7:18:21.52:0,22,247 0/0:12,2:14:24.07:0,24,312 0/0:11,7:18:27.09:0,27,351 0/1:10,1:11:9.54:10,0,189 0/0:7,5:12:2.38:0,2,231 0/0:16,7:23:1.39:4,0,473 0/0:7,4:11:21.04:0,21,233 0/1:7,3:10:45.74:46,0,168 0/0:9,6:15:1.97:2,0,303 0/0:37,16:53:65.86:0,66,1128 0/0:13,4:17:36.08:0,36,426 0/0:8,7:15:24.06:0,24,288 0/1:7,7:14:14.19:14,0,211 0/0:16,6:22:8.67:0,9,408 0/0:33,9:42:47.51:0,48,841 0/0:20,6:26:17.55:0,18,501 0/0:15,6:21:4.92:0,5,347 0/0:10,14:24:24.08:0,24,320 0/0:6,5:11:15.03:0,15,184 0/0:12,3:15:27.09:0,27,351 0/0:10,6:16:2.39:0,2,253 0/0:8,7:15:1.40:0,1,224 0/1:6,7:13:13.50:13,0,169 0/1:12,6:18:17.82:18,0,390 0/0:11,1:12:30.09:0,30,372 0/0:9,5:14:3.39:0,3,286 0/1:19,9:28:30.98:31,0,413 0/1:16,10:26:12.41:12,0,402 0/1:13,6:19:20.22:20,0,315 0/1:6,6:12:13.62:14,0,113 0/0:16,5:21:3.68:0,4,420 0/0:18,7:25:45.12:0,45,533 0/0:16,5:21:6.60:0,7,385 0/0:12,7:19:2.10:0,2,358 0/0:12,6:18:27.08:0,27,323 0/1:9,3:12:10.51:11,0,173 0/0:12,1:13:33.06:0,33,382 16 28986663 . T G 158.15 . AC=11;AF=0.131;AN=84;BaseQRankSum=-7.987;DP=724;Dels=0.00;FS=98.229;HRun=2;HaplotypeScore=0.5239;InbreedingCoeff=-0.1867;MQ=57.80;MQ0=0;MQRankSum=-1.133;QD=0.79;ReadPosRankSum=-4.659 GT:AD:DP:GQ:PL 0/1:10,14:24:74.99:75,0,276 0/0:10,2:12:30.07:0,30,344 0/0:5,10:15:15.04:0,15,173 0/1:9,14:23:24.10:24,0,278 0/0:13,16:29:39.10:0,39,444 0/0:12,9:21:27.07:0,27,309 0/0:10,7:17:21.06:0,21,245 0/0:8,11:19:21.06:0,21,246 0/0:4,6:10:12.04:0,12,143 0/0:7,1:8:15.04:0,15,177 0/1:6,7:13:39.83:40,0,193 0/0:10,9:19:2.76:1,0,284 0/1:7,7:14:11.46:11,0,162 0/0:9,3:12:24.07:0,24,285 0/0:15,18:33:42.11:0,42,469 0/1:7,8:15:10.49:10,0,200 0/0:9,6:15:24.06:0,24,274 0/0:11,6:17:33.08:0,33,383 0/0:5,5:10:15.04:0,15,176 0/0:17,12:30:45.12:0,45,519 0/0:12,2:14:5.52:0,6,373 0/0:12,9:21:36.09:0,36,406 0/1:14,19:33:8.43:8,0,368 0/0:9,6:15:24.04:0,24,268 0/0:10,7:17:7.39:0,7,313 0/0:10,6:16:24.06:0,24,269 0/0:7,9:16:21.06:0,21,251 0/0:8,5:13:18.05:0,18,210 0/1:11,7:18:30.49:30,0,354 0/0:7,13:20:1.56:4,0,180 0/0:10,8:18:26.09:0,26,280 0/0:4,10:14:12.02:0,12,128 0/1:2,10:12:14.67:15,0,61 0/0:9,7:16:23.66:0,24,257 0/1:9,7:16:11.18:11,0,223 0/1:7,9:16:42.04:42,0,149 0/1:12,5:17:18.02:18,0,361 0/0:10,10:21:1.96:2,0,268 0/0:5,7:12:12.02:0,12,127 0/0:7,8:15:15.05:0,15,186 0/0:7,3:10:21.05:0,21,239 0/0:12,6:18:21.03:0,21,228 16 28993369 . C T 1034.70 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.811;DP=1144;Dels=0.00;FS=5.128;HRun=1;HaplotypeScore=0.8141;InbreedingCoeff=-0.0244;MQ=59.18;MQ0=0;MQRankSum=-0.046;QD=15.92;ReadPosRankSum=-0.395 GT:AD:DP:GQ:PL 0/0:17,0:17:42.14:0,42,548 0/0:22,0:22:63.20:0,63,787 0/1:7,12:19:99:358,0,182 0/0:40,0:41:99:0,114,1516 0/0:54,0:54:99:0,150,2029 0/0:30,0:30:90.28:0,90,1207 0/0:21,0:21:63.19:0,63,841 0/0:36,0:37:99:0,102,1384 0/0:32,0:32:93.29:0,93,1175 0/0:18,0:18:51.16:0,51,659 0/0:19,0:19:54.17:0,54,701 0/0:18,0:18:48.15:0,48,610 0/0:15,0:15:33.10:0,33,431 0/0:26,0:26:72.21:0,72,888 0/0:54,0:54:99:0,141,1836 0/0:20,0:20:60.19:0,60,777 0/0:19,0:19:54.17:0,54,701 0/0:25,0:25:69.21:0,69,863 0/0:37,0:37:99:0,99,1246 0/1:22,24:46:99:739,0,602 0/0:43,0:43:99:0,117,1504 0/0:36,0:36:99:0,99,1245 0/0:56,0:56:99:0,160,2167 0/0:24,0:24:63.21:0,63,868 0/0:33,0:33:90.29:0,90,1211 0/0:24,0:24:60.20:0,60,829 0/0:19,0:19:54.17:0,54,694 0/0:23,0:23:66.21:0,66,848 0/0:14,0:14:36.12:0,36,466 0/0:25,0:25:66.21:0,66,850 0/0:25,0:25:75.23:0,75,934 0/0:31,0:31:78.24:0,78,989 0/0:22,0:22:63.20:0,63,794 0/0:21,0:21:60.18:0,60,757 0/0:21,0:21:60.17:0,60,726 0/0:20,0:20:54.16:0,54,679 0/0:32,0:32:84.27:0,84,1079 0/0:20,0:20:54.18:0,54,706 0/0:24,0:24:66.21:0,66,850 0/0:19,0:19:54.15:0,54,670 0/0:16,0:16:45.14:0,45,573 0/0:26,0:26:57.18:0,57,750 16 28995145 . C T 13767.87 . AC=10;AF=0.119;AN=84;BaseQRankSum=-19.781;DP=3573;Dels=0.00;FS=0.350;HRun=2;HaplotypeScore=2.0071;InbreedingCoeff=-0.1351;MQ=59.06;MQ0=0;MQRankSum=0.824;QD=12.95;ReadPosRankSum=2.055 GT:AD:DP:GQ:PL 0/1:22,28:50:99:839,0,627 0/0:57,0:57:99:0,150,1922 0/0:50,0:50:99:0,144,1818 0/1:108,102:210:99:2703,0,3473 0/1:101,77:178:99:2220,0,3144 0/0:112,0:112:99:0,313,4244 0/0:115,0:115:99:0,307,4148 0/0:161,1:163:99:0,421,5667 0/0:62,1:63:99:0,184,2288 0/0:60,0:61:99:0,166,2118 0/0:59,0:59:99:0,159,2028 0/0:57,0:57:99:0,153,1972 0/0:48,0:48:99:0,126,1617 0/1:32,23:55:99:568,0,989 0/1:98,111:210:99:2823,0,2856 0/0:55,0:55:99:0,150,1911 0/1:25,24:49:99:654,0,772 0/0:46,0:46:99:0,129,1644 0/0:105,0:105:99:0,286,3623 0/0:97,0:97:99:0,259,3302 0/0:98,0:101:99:0,271,3419 0/0:81,0:81:99:0,229,2854 0/0:216,0:217:99:0,581,7892 0/0:108,0:108:99:0,274,3735 0/1:73,70:143:99:1967,0,2117 0/0:99,0:99:99:0,262,3498 0/0:50,0:50:99:0,141,1808 0/0:51,0:51:99:0,138,1787 0/0:44,0:44:99:0,126,1602 0/1:26,22:48:99:593,0,845 0/1:30,23:53:99:541,0,930 0/0:110,0:110:99:0,289,3709 0/1:36,31:67:99:860,0,1078 0/0:46,0:46:99:0,126,1601 0/0:55,0:55:99:0,156,1995 0/0:66,0:66:99:0,178,2266 0/0:104,0:104:99:0,280,3535 0/0:54,0:54:99:0,150,1912 0/0:60,0:60:99:0,169,2124 0/0:57,0:57:99:0,169,2111 0/0:55,0:55:99:0,156,1982 0/0:64,0:64:99:0,187,2372 16 29848122 . T G 71.53 . 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G C 378.68 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.312;DP=1452;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8865;InbreedingCoeff=-0.0120;MQ=58.47;MQ0=0;MQRankSum=0.907;QD=11.14;ReadPosRankSum=0.930 GT:AD:DP:GQ:PL 0/0:29,0:29:87.25:0,87,1049 0/0:23,0:23:63.19:0,63,785 0/0:22,0:22:57.13:0,57,674 0/0:79,0:79:99:0,232,2968 0/0:62,0:62:99:0,181,2345 0/0:50,0:50:99:0,147,1848 0/0:31,0:31:90.29:0,90,1174 0/0:50,0:50:99:0,150,1932 0/0:26,0:26:75.23:0,75,926 0/0:22,0:22:63.20:0,63,786 0/0:15,0:15:45.14:0,45,562 0/0:19,0:19:57.18:0,57,708 0/0:19,0:19:54.17:0,54,664 0/0:19,0:19:57.18:0,57,712 0/0:79,0:79:99:0,229,2809 0/0:24,0:24:72.22:0,72,890 0/0:27,0:27:81.24:0,81,980 0/0:24,0:24:72.20:0,72,851 0/0:45,0:45:99:0,135,1672 0/0:53,0:53:99:0,159,1934 0/0:41,0:41:99:0,117,1414 0/0:33,0:33:96.28:0,96,1163 0/0:79,0:79:99:0,229,2985 0/0:23,0:23:69.20:0,69,891 0/0:49,0:49:99:0,144,1797 0/0:36,0:36:99:0,108,1404 0/0:26,0:26:78.22:0,78,968 0/0:28,0:28:81.22:0,81,943 0/0:22,0:22:66.21:0,66,832 0/0:30,0:30:87.25:0,87,1047 0/0:18,0:18:54.14:0,54,624 0/0:64,0:64:99:0,184,2246 0/1:19,15:34:99:425,0,554 0/0:21,0:21:63.18:0,63,752 0/0:22,0:22:66.18:0,66,795 0/0:20,0:20:57.17:0,57,690 0/0:49,0:49:99:0,144,1754 0/0:32,0:32:93.25:0,93,1111 0/0:20,0:20:60.15:0,60,714 0/0:25,0:25:75.23:0,75,928 0/0:33,0:33:96.30:0,96,1188 0/0:29,0:29:81.25:0,81,1010 16 29891206 . C T 5785.98 . 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G A 2766.92 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.812;DP=8227;DS;Dels=0.00;FS=3.484;HRun=0;HaplotypeScore=3.9109;InbreedingCoeff=-0.0120;MQ=59.63;MQ0=0;MQRankSum=1.713;QD=15.12;ReadPosRankSum=0.359 GT:AD:DP:GQ:PL 0/0:187,0:187:99:0,523,6283 0/0:180,0:180:99:0,481,5814 0/0:194,0:194:99:0,502,6136 0/0:249,0:249:99:0,692,9004 0/0:206,1:207:99:0,566,7412 0/0:195,0:195:99:0,545,7024 0/0:164,0:164:99:0,448,5757 0/0:197,0:198:99:0,524,6789 0/0:170,2:172:99:0,414,5478 0/0:184,0:184:99:0,511,6119 0/0:172,1:173:99:0,424,5476 0/0:206,0:206:99:0,569,6787 0/0:173,0:173:99:0,457,5537 0/0:178,0:178:99:0,475,5677 0/0:244,0:245:99:0,644,7631 0/0:187,0:187:99:0,493,5971 0/0:200,0:200:99:0,527,6420 0/0:177,0:177:99:0,481,5830 0/0:248,1:250:99:0,656,7833 0/0:250,0:250:99:0,677,8356 0/0:239,0:240:99:0,656,7837 0/0:185,0:185:99:0,499,5923 0/0:249,0:250:99:0,707,9231 0/0:178,0:178:99:0,469,6146 0/0:204,0:205:99:0,566,7266 0/0:197,0:197:99:0,515,6683 0/0:173,1:174:99:0,422,5412 0/0:178,1:179:99:0,461,5900 0/0:185,1:186:99:0,471,6046 0/0:192,0:192:99:0,517,6215 0/0:179,0:179:99:0,478,5808 0/0:245,0:246:99:0,632,7835 0/1:85,98:183:99:2813,0,2338 0/0:209,0:209:99:0,557,6700 0/0:166,1:167:99:0,444,5543 0/0:170,0:170:99:0,466,5550 0/0:250,0:250:99:0,692,8306 0/0:178,0:178:99:0,487,5837 0/0:161,0:161:99:0,439,5244 0/0:151,0:152:99:0,427,5104 0/0:182,0:182:99:0,484,5818 0/0:193,0:193:99:0,521,6333 16 29994922 . C T 91799.82 . 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T G 2332.78 . AC=2;AF=0.024;AN=84;BaseQRankSum=-12.025;DP=4323;DS;Dels=0.00;FS=0.399;HRun=0;HaplotypeScore=2.3645;InbreedingCoeff=-0.0244;MQ=59.24;MQ0=0;MQRankSum=-0.232;QD=13.56;ReadPosRankSum=-0.053 GT:AD:DP:GQ:PL 0/0:95,0:95:99:0,262,3293 0/0:87,0:87:99:0,223,2853 0/0:79,0:80:99:0,223,2768 0/0:173,0:173:99:0,454,5895 0/0:171,0:171:99:0,454,5928 0/0:123,0:123:99:0,331,4339 0/0:93,0:93:99:0,250,3254 0/0:109,0:109:99:0,289,3747 0/0:77,0:77:99:0,208,2609 0/0:76,0:76:99:0,202,2542 0/0:90,0:90:99:0,244,3087 0/1:41,44:85:99:1221,0,1182 0/0:64,0:64:99:0,169,2119 0/1:41,46:87:99:1174,0,1207 0/0:243,0:243:99:0,656,8281 0/0:106,0:106:99:0,301,3725 0/0:103,0:103:99:0,274,3463 0/0:70,0:70:99:0,199,2474 0/0:117,1:119:99:0,325,4033 0/0:140,0:140:99:0,376,4645 0/0:120,0:120:99:0,310,3943 0/0:88,0:88:99:0,232,2898 0/0:178,0:178:99:0,469,6130 0/0:95,0:95:99:0,253,3310 0/0:116,0:116:99:0,295,3866 0/0:110,0:110:99:0,283,3731 0/0:75,0:75:99:0,214,2682 0/0:75,0:75:99:0,199,2500 0/0:90,0:90:99:0,238,3030 0/0:84,0:84:99:0,238,2975 0/0:91,0:91:99:0,256,3220 0/0:130,0:130:99:0,337,4207 0/0:80,0:80:99:0,214,2693 0/0:108,0:108:99:0,298,3702 0/0:75,0:75:99:0,211,2629 0/0:96,0:96:99:0,268,3372 0/0:91,0:91:99:0,247,3081 0/0:109,0:109:99:0,289,3651 0/0:82,0:82:99:0,235,2900 0/0:85,0:85:99:0,223,2769 0/0:81,0:81:99:0,211,2644 0/0:73,0:73:99:0,199,2494 16 30034986 . G A 1921.71 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.271;DP=1427;Dels=0.00;FS=4.081;HRun=0;HaplotypeScore=1.1958;InbreedingCoeff=-0.0370;MQ=59.07;MQ0=1;MQRankSum=-0.007;QD=16.86;ReadPosRankSum=1.352 GT:AD:DP:GQ:PL 0/0:21,0:21:54.15:0,54,649 0/0:25,0:25:69.19:0,69,799 0/0:28,0:28:75.22:0,75,890 0/1:17,28:45:99:748,0,469 0/1:19,29:49:99:774,0,505 0/0:35,0:35:93.29:0,93,1183 0/0:30,0:30:75.21:0,75,926 0/0:26,0:26:75.22:0,75,939 0/0:28,0:28:78.20:0,78,892 0/0:28,0:29:78.20:0,78,908 0/0:22,0:22:60.17:0,60,719 0/0:28,0:28:78.21:0,78,893 0/0:18,0:18:48.12:0,48,566 0/0:27,0:27:78.21:0,78,890 0/0:109,0:110:99:0,259,3157 0/0:33,0:33:93.23:0,93,1059 0/0:42,0:42:99:0,108,1218 0/0:21,0:21:63.17:0,63,727 0/0:51,0:51:99:0,129,1521 0/0:65,0:65:99:0,162,1956 0/0:56,0:56:99:0,150,1771 0/0:30,0:30:75.20:0,75,872 0/0:36,0:36:96.30:0,96,1228 0/0:37,0:37:90.28:0,90,1159 0/0:29,0:29:81.23:0,81,978 0/0:23,0:23:63.15:0,63,735 0/0:11,0:11:33.08:0,33,394 0/0:27,0:27:75.21:0,75,873 0/1:4,16:20:86.57:476,0,87 0/0:20,0:20:54.14:0,54,612 0/0:26,0:26:75.20:0,75,841 0/0:58,0:58:99:0,138,1650 0/0:36,0:36:99:0,99,1174 0/0:21,0:21:63.17:0,63,703 0/0:29,0:29:81.21:0,81,919 0/0:43,0:43:99:0,123,1463 0/0:42,0:42:99:0,108,1285 0/0:32,0:32:81.23:0,81,973 0/0:37,0:37:99:0,108,1222 0/0:28,0:28:81.20:0,81,917 0/0:29,0:29:78.19:0,78,899 0/0:24,0:24:69.18:0,69,775 16 30199713 . C A 1815.54 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.039;DP=4023;DS;Dels=0.00;FS=17.523;HRun=0;HaplotypeScore=5.1833;InbreedingCoeff=-0.0244;MQ=58.98;MQ0=0;MQRankSum=1.296;QD=12.10;ReadPosRankSum=0.638 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,156,1901 0/0:49,0:49:99:0,132,1567 0/0:45,0:45:99:0,108,1356 0/0:239,0:239:99:0,599,7755 0/0:239,1:240:99:0,605,7926 0/0:159,0:159:99:0,406,5198 0/0:142,0:142:99:0,358,4600 0/0:139,0:139:99:0,346,4549 0/0:75,0:75:99:0,205,2569 0/0:44,0:44:99:0,114,1385 0/0:62,0:62:99:0,174,2100 0/0:47,0:47:99:0,120,1474 0/0:56,0:56:99:0,150,1852 0/0:51,0:51:99:0,135,1692 0/0:234,0:234:99:0,545,6899 0/0:64,0:64:99:0,187,2299 0/0:60,0:60:99:0,150,1915 0/0:44,0:44:99:0,123,1521 0/0:143,0:143:99:0,340,4154 0/0:141,0:141:99:0,358,4583 0/0:120,1:121:99:0,298,3556 0/0:95,0:95:99:0,259,3217 0/0:240,0:240:99:0,584,7665 0/0:139,0:139:99:0,349,4472 0/0:174,0:174:99:0,439,5731 0/0:148,0:148:99:0,352,4581 0/0:45,0:45:99:0,117,1449 0/0:57,0:57:99:0,147,1770 0/0:46,0:46:99:0,132,1584 0/1:21,30:51:99:811,0,540 0/0:43,0:43:99:0,105,1306 0/0:118,0:118:99:0,289,3693 0/1:58,41:99:99:1067,0,1610 0/0:59,0:59:99:0,156,1919 0/0:58,0:58:99:0,153,1903 0/0:64,0:64:99:0,175,2162 0/0:127,0:127:99:0,313,3860 0/0:47,0:47:99:0,123,1524 0/0:56,0:56:99:0,141,1747 0/0:47,1:48:97.14:0,97,1576 0/0:43,0:43:99:0,114,1426 0/0:54,0:54:99:0,150,1811 16 30393147 . C A 11726.51 . AC=5;AF=0.060;AN=84;BaseQRankSum=-5.568;DP=6094;DS;Dels=0.00;FS=37.765;HRun=1;HaplotypeScore=3.6784;InbreedingCoeff=-0.0633;MQ=59.42;MQ0=0;MQRankSum=1.286;QD=13.96;ReadPosRankSum=-0.832 GT:AD:DP:GQ:PL 0/0:111,0:111:99:0,310,3777 0/0:94,0:94:99:0,253,3150 0/0:84,0:84:99:0,229,2854 0/0:250,0:250:99:0,683,8886 0/0:247,0:247:99:0,671,8855 0/0:247,2:249:99:0,600,8729 0/0:225,0:225:99:0,608,8069 0/1:114,111:225:99:3120,0,3539 0/0:93,0:93:99:0,250,3146 0/0:88,0:88:99:0,238,2887 0/0:89,1:90:99:0,215,3073 0/0:100,0:100:99:0,265,3291 0/0:99,0:100:99:0,274,3402 0/0:93,0:93:99:0,268,3290 0/0:249,0:249:99:0,683,8333 0/0:84,0:84:99:0,232,2839 0/0:115,1:117:99:0,301,3784 0/0:96,0:96:99:0,262,3287 0/0:197,0:197:99:0,517,6167 0/0:244,1:245:99:0,635,8041 0/0:228,0:228:99:0,587,7226 0/0:150,0:150:99:0,385,4833 0/1:129,120:249:99:3316,0,4073 0/0:188,1:189:99:0,500,6604 0/0:246,1:247:99:0,630,8584 0/1:92,97:189:99:2891,0,2663 0/0:89,0:89:99:0,232,2927 0/0:104,0:104:99:0,286,3512 0/0:74,0:74:99:0,211,2604 0/0:100,0:100:99:0,253,3174 0/0:111,0:111:99:0,292,3661 0/0:219,2:221:99:0,563,7076 0/0:127,0:127:99:0,337,4210 0/1:47,47:94:99:1305,0,1438 0/1:41,41:82:99:1094,0,1206 0/0:106,0:106:99:0,295,3653 0/0:208,1:209:99:0,545,6648 0/0:118,0:118:99:0,322,3994 0/0:98,0:98:99:0,274,3382 0/0:80,0:80:99:0,220,2697 0/0:88,0:88:99:0,238,2884 0/0:103,0:103:99:0,286,3552 16 30569146 . G A 197.96 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.585;DP=632;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.2931;InbreedingCoeff=-0.0137;MQ=54.08;MQ0=0;MQRankSum=1.311;QD=11.00;ReadPosRankSum=0.361 GT:AD:DP:GQ:PL 0/0:9,0:9:27.08:0,27,333 0/0:13,0:13:36.11:0,36,458 0/0:10,0:10:30.10:0,30,378 0/0:21,0:21:60.20:0,60,794 0/0:26,0:26:72.24:0,72,972 0/0:17,0:17:48.15:0,48,624 0/0:10,0:10:30.09:0,30,390 0/0:19,0:19:54.17:0,54,699 0/0:9,0:9:24.08:0,24,307 0/0:14,0:14:33.11:0,33,435 0/0:9,0:9:27.08:0,27,338 0/0:10,0:10:30.09:0,30,377 0/0:5,0:5:12.04:0,12,162 0/0:12,0:12:33.11:0,33,422 0/0:37,0:37:96.30:0,96,1219 0/0:19,0:19:57.18:0,57,705 0/0:13,0:13:33.09:0,33,394 0/0:11,0:11:30.09:0,30,360 0/0:30,0:30:72.23:0,72,944 0/0:17,0:17:48.14:0,48,587 0/0:26,0:27:69.22:0,69,878 0/0:12,0:12:36.11:0,36,446 0/0:31,0:31:87.28:0,87,1172 0/0:8,0:8:21.07:0,21,284 0/0:14,0:14:39.13:0,39,519 0/0:15,0:15:39.12:0,39,507 0/0:6,0:6:18.06:0,18,231 0/0:18,0:18:42.14:0,42,559 0/0:9,0:9:27.09:0,27,337 0/0:10,0:10:30.10:0,30,376 0/0:8,0:8:18.06:0,18,230 0/0:20,0:20:54.17:0,54,691 0/0:8,0:8:24.06:0,24,292 0/0:19,0:19:51.14:0,51,640 0/0:6,0:6:18.05:0,18,214 0/1:8,10:18:99:244,0,242 0/0:29,0:29:75.24:0,75,957 0/0:14,0:14:39.13:0,39,501 0/0:14,0:14:36.10:0,36,431 0/0:10,0:10:30.08:0,30,369 0/0:11,0:11:33.11:0,33,420 0/0:14,0:14:36.12:0,36,473 16 30583553 . G A 294.38 . AC=11;AF=0.131;AN=84;BaseQRankSum=-8.921;DP=1491;Dels=0.00;FS=231.575;HRun=2;HaplotypeScore=1.2979;InbreedingCoeff=-0.1836;MQ=57.88;MQ0=0;MQRankSum=2.519;QD=0.85;ReadPosRankSum=-4.939 GT:AD:DP:GQ:PL 0/0:19,7:26:45.12:0,45,534 0/0:21,11:32:48.07:0,48,513 0/0:17,11:28:19.45:0,19,495 0/0:42,12:54:45.09:0,45,1192 0/0:40,18:58:52.87:0,53,1014 0/0:36,9:45:75.21:0,75,964 0/0:39,10:49:87.28:0,87,1153 0/0:34,11:45:60.17:0,60,786 0/0:26,9:35:29.56:0,30,655 0/0:17,7:24:7.76:0,8,439 0/0:17,8:26:2.43:1,0,324 0/1:20,10:30:18.51:19,0,457 0/1:8,9:17:15.55:16,0,132 0/1:24,12:36:2.92:3,0,617 0/0:50,29:79:38.52:0,39,1304 0/0:20,7:27:4.54:0,5,349 0/0:23,6:29:60.12:0,60,709 0/0:24,8:32:33.94:0,34,753 0/1:30,12:42:17.11:17,0,789 0/0:49,12:61:99:0,108,1245 0/1:26,12:38:90.90:91,0,625 0/0:21,13:34:8.15:0,8,460 0/0:61,15:77:99:0,138,1829 0/0:29,5:34:63.18:0,63,829 0/1:39,10:49:18.05:18,0,1033 0/0:29,9:38:43.89:0,44,1019 0/0:17,8:25:45.13:0,45,545 0/0:22,8:30:19.58:0,20,532 0/0:12,2:14:30.09:0,30,363 0/0:18,11:29:11.70:0,12,486 0/1:15,8:23:20.23:20,0,299 0/0:38,15:53:14.95:0,15,731 0/0:21,11:32:14.70:0,15,509 0/0:17,9:26:2.06:2,0,323 0/0:15,5:20:0.60:0,1,325 0/0:27,7:34:32.75:0,33,740 0/1:28,8:36:88.23:88,0,739 0/1:19,10:29:81.74:82,0,366 0/1:16,10:26:57.58:58,0,411 0/1:15,6:21:11.06:11,0,382 0/0:16,7:23:6.61:0,7,383 0/0:16,9:25:45.14:0,45,560 16 30663143 . G C 1225.89 . AC=28;AF=0.333;AN=84;BaseQRankSum=-13.112;DP=2105;Dels=0.00;FS=890.174;HRun=2;HaplotypeScore=0.9980;InbreedingCoeff=-0.4950;MQ=57.81;MQ0=0;MQRankSum=0.772;QD=0.78;ReadPosRankSum=-17.271 GT:AD:DP:GQ:PL 0/1:27,13:40:11.60:12,0,635 0/0:19,4:23:36.07:0,36,393 0/0:20,4:24:19.75:0,20,505 0/1:90,68:160:99:232,0,1850 0/1:79,65:144:99:149,0,1999 0/1:61,37:98:76.09:76,0,1429 0/1:53,30:83:69.19:69,0,1034 0/0:64,23:89:53.19:0,53,1493 0/1:19,12:31:82.06:82,0,387 0/0:16,4:20:5.25:0,5,278 0/0:9,4:14:24.06:0,24,271 0/1:15,12:28:44.55:45,0,307 0/0:10,1:11:24.06:0,24,263 0/1:18,11:29:42.38:42,0,351 0/1:70,24:94:45.81:46,0,1513 0/1:19,8:27:42.96:43,0,415 0/1:19,13:32:29.99:30,0,404 0/1:19,5:24:87.68:88,0,374 0/1:39,16:55:24.13:24,0,805 0/1:58,20:78:40.43:40,0,1126 0/1:31,14:45:14.56:15,0,745 0/1:34,22:57:69.72:70,0,611 0/1:129,66:195:18.68:19,0,3131 0/1:39,26:65:17.15:17,0,1006 0/0:69,23:92:65.96:0,66,1488 0/1:43,19:62:22.95:23,0,924 0/1:17,9:26:49.33:49,0,320 0/1:22,8:30:61.08:61,0,545 0/0:17,8:25:6.52:0,7,411 0/0:21,9:30:25.45:0,25,492 0/1:14,10:24:54:54,0,296 0/0:42,18:60:65.50:0,66,917 0/1:30,13:43:33.17:33,0,639 0/0:19,8:27:13.40:0,13,316 0/1:18,3:21:34.77:35,0,373 0/0:23,8:31:22.97:0,23,597 0/0:49,9:58:36.57:0,37,1109 0/1:19,4:23:9.12:9,0,487 0/1:15,4:19:0.90:1,0,312 0/1:22,12:34:18.57:19,0,490 0/1:11,3:14:19.43:19,0,203 0/0:17,3:20:12.45:0,12,388 16 30665574 . G C 6353.46 . AC=28;AF=0.333;AN=84;BaseQRankSum=-23.013;DP=8488;DS;Dels=0.01;FS=3200.000;HRun=2;HaplotypeScore=20.0040;InbreedingCoeff=-0.5000;MQ=58.79;MQ0=0;MQRankSum=-3.301;QD=1.08;ReadPosRankSum=-39.338 GT:AD:DP:GQ:PL 0/1:113,63:176:99:307,0,2527 0/0:128,44:172:92.19:0,92,3191 0/1:98,42:140:14.04:14,0,2231 0/1:81,169:250:99:939,0,1831 0/1:74,175:250:99:953,0,1807 0/1:114,135:250:99:475,0,2859 0/0:141,109:250:40.72:0,41,3652 0/1:117,133:250:99:208,0,2881 0/1:139,67:206:99:124,0,3129 0/1:124,48:172:10.74:11,0,3183 0/1:116,58:175:38.21:38,0,2754 0/0:108,42:151:99:0,138,2639 0/1:112,51:163:38.50:38,0,2635 0/0:120,56:176:99:0,141,3289 0/1:92,157:250:99:888,0,1842 0/0:125,37:164:99:0,102,3283 0/0:130,47:177:61.34:0,61,3270 0/1:106,58:164:50.04:50,0,2640 0/0:141,12:154:99:0,290,3868 0/1:149,99:250:20.05:20,0,3083 0/1:166,82:250:99:320,0,3997 0/0:170,78:248:49.60:0,50,3962 0/1:83,166:250:99:543,0,2218 0/1:135,115:250:99:99,0,3656 0/1:138,112:250:99:276,0,3639 0/1:150,100:250:99:257,0,3858 0/1:115,39:154:41.84:42,0,2812 0/0:108,50:158:31.41:0,31,2701 0/1:75,53:128:99:202,0,1770 0/0:121,55:179:13.29:0,13,2899 0/0:110,44:154:21.98:0,22,2768 0/1:153,96:250:22.98:23,0,3485 0/1:155,82:239:63.28:63,0,3657 0/1:126,57:184:33.61:34,0,3092 0/1:138,62:201:87.94:88,0,3199 0/0:148,57:206:38.52:0,39,3563 0/1:173,76:250:18.61:19,0,4256 0/0:143,53:196:99:0,167,3403 0/1:113,56:169:89.79:90,0,2829 0/1:120,56:177:59.25:59,0,3122 0/0:105,56:161:9.81:0,10,2727 0/1:134,51:185:99:174,0,3328 16 30667521 . T C 671.02 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.255;DP=2571;DS;Dels=0.00;FS=3.689;HRun=0;HaplotypeScore=1.7936;InbreedingCoeff=-0.0120;MQ=59.28;MQ0=0;MQRankSum=1.463;QD=14.28;ReadPosRankSum=-0.726 GT:AD:DP:GQ:PL 0/0:31,0:31:84.25:0,84,1010 0/0:38,0:38:99:0,105,1259 0/0:32,0:32:90.25:0,90,1075 0/0:180,0:181:99:0,493,5903 0/0:146,0:146:99:0,412,4962 0/0:131,0:133:99:0,364,4528 0/0:92,0:92:99:0,244,2932 0/0:102,0:102:99:0,298,3576 0/0:56,0:56:99:0,147,1755 0/0:34,0:34:90.27:0,90,1083 0/0:32,0:32:90.26:0,90,1071 0/0:32,0:32:93.27:0,93,1101 0/0:34,0:35:96.28:0,96,1137 0/0:46,0:46:99:0,123,1471 0/0:109,1:110:99:0,310,3605 0/0:34,0:34:99:0,99,1159 0/0:45,0:46:99:0,120,1453 0/0:37,0:37:99:0,102,1226 0/0:61,0:61:99:0,172,2079 0/0:78,0:79:99:0,211,2510 0/0:59,0:60:99:0,168,2035 0/0:46,0:46:99:0,123,1439 0/0:179,0:181:99:0,487,5857 0/0:82,0:82:99:0,220,2676 0/0:93,1:94:99:0,262,3132 0/0:84,0:84:99:0,229,2816 0/0:26,0:26:78.24:0,78,935 0/1:18,29:47:99:717,0,456 0/0:28,0:28:84.25:0,84,996 0/0:53,0:53:99:0,156,1828 0/0:44,0:45:99:0,123,1478 0/0:65,0:65:99:0,178,2111 0/0:55,0:55:99:0,153,1808 0/0:42,0:42:99:0,120,1460 0/0:30,0:30:84.25:0,84,996 0/0:37,0:37:99:0,108,1282 0/0:45,1:46:99:0,132,1571 0/0:36,0:36:99:0,102,1197 0/0:43,0:43:99:0,123,1481 0/0:42,0:42:99:0,117,1393 0/0:25,0:25:69.21:0,69,822 0/0:47,0:47:99:0,138,1642 16 30667568 . A G 90.88 . AC=3;AF=0.036;AN=84;BaseQRankSum=-21.981;DP=2155;Dels=0.00;FS=992.061;HRun=2;HaplotypeScore=1.0992;InbreedingCoeff=-0.0593;MQ=59.02;MQ0=0;MQRankSum=-1.333;QD=0.84;ReadPosRankSum=-14.869 GT:AD:DP:GQ:PL 0/0:25,4:29:65.41:0,65,774 0/0:30,8:38:83.85:0,84,1013 0/1:23,7:30:67.41:67,0,706 0/0:112,34:147:99:0,178,3804 0/0:80,32:113:38.62:0,39,2479 0/0:77,25:102:87.25:0,87,2606 0/0:58,15:73:99:0,105,1941 0/0:46,18:65:82.88:0,83,1538 0/0:29,7:36:28.02:0,28,949 0/0:24,5:29:15.90:0,16,740 0/0:31,6:38:48.37:0,48,933 0/0:23,9:32:66.04:0,66,760 0/0:23,3:26:60.16:0,60,712 0/0:33,10:43:17.33:0,17,1014 0/0:71,24:96:1.09:5,0,2220 0/0:36,6:43:26.03:0,26,1075 0/0:26,6:32:49.59:0,50,900 0/0:26,6:32:51.22:0,51,856 0/0:39,9:48:22.10:0,22,1186 0/0:47,8:55:97.57:0,98,1442 0/0:38,11:49:94.76:0,95,1121 0/0:32,12:44:47.94:0,48,1063 0/0:91,35:126:22.97:0,23,2806 0/0:55,16:71:99:0,101,1883 0/0:67,14:81:99:0,137,2179 0/0:58,15:73:99:0,110,1990 0/0:14,2:17:12.64:0,13,482 0/1:32,11:43:50.38:50,0,862 0/0:18,5:23:0.99:6,0,593 0/0:34,6:40:93.29:0,93,1164 0/0:23,8:31:17.75:0,18,736 0/0:48,12:60:95:0,95,1555 0/0:49,16:66:56.92:0,57,1579 0/0:26,6:32:52.54:0,53,878 0/0:28,6:34:78.22:0,78,934 0/1:25,9:35:46.32:46,0,729 0/0:50,12:62:99:0,101,1559 0/0:26,6:33:78.24:0,78,953 0/0:25,6:31:41.27:0,41,890 0/0:27,11:38:77.56:0,78,917 0/0:21,4:25:54.16:0,54,648 0/0:30,4:34:87.26:0,87,1066 16 30723656 . T G 89.56 . AC=6;AF=0.071;AN=84;BaseQRankSum=-25.950;DP=4341;DS;Dels=0.00;FS=1374.323;HRun=2;HaplotypeScore=2.1433;InbreedingCoeff=-0.0938;MQ=59.27;MQ0=0;MQRankSum=-0.483;QD=0.20;ReadPosRankSum=-17.788 GT:AD:DP:GQ:PL 0/0:46,30:76:20.58:0,21,1485 0/0:52,30:83:39.37:0,39,1686 0/0:54,22:76:75.40:0,75,1613 0/0:131,79:210:5.26:0,5,4171 0/0:112,66:178:97.79:0,98,3814 0/0:94,62:156:99:0,175,3326 0/0:82,32:115:99:0,182,2809 0/0:96,55:151:99:0,146,3331 0/1:52,34:86:18.49:18,0,1611 0/0:49,23:72:29.82:0,30,1591 0/0:42,16:58:76.57:0,77,1420 0/0:47,32:79:39.57:0,40,1457 0/0:35,18:53:46.44:0,46,1180 0/0:45,28:73:10.91:0,11,1392 0/0:140,86:226:61.68:0,62,4397 0/0:52,20:72:81.76:0,82,1718 0/1:37,34:71:31.70:32,0,1148 0/1:41,34:75:76.07:76,0,1281 0/0:73,46:121:0.40:10,0,2284 0/0:103,49:152:99:0,187,3326 0/0:96,44:141:99:0,156,3249 0/0:45,33:78:14.16:0,14,1389 0/0:125,79:205:99:0,173,4155 0/0:98,45:143:99:0,209,3526 0/0:76,54:130:99:0,107,2494 0/0:84,46:130:99:0,175,2952 0/1:37,24:61:14.40:14,0,1160 0/1:46,28:74:12.38:12,0,1317 0/1:48,32:80:34.88:35,0,1502 0/0:41,15:56:59.37:0,59,1334 0/0:49,20:69:99:0,119,1658 0/0:99,43:142:99:0,163,3148 0/0:64,48:112:85.11:0,85,1940 0/0:57,22:79:99:0,113,1906 0/0:44,32:76:33.24:0,33,1457 0/0:54,28:82:46.59:0,47,1601 0/0:73,46:119:26.59:0,27,2233 0/0:52,29:81:13.30:0,13,1712 0/0:58,29:87:82.06:0,82,1898 0/0:57,19:76:99:0,133,1863 0/0:40,24:64:68.07:0,68,1318 0/0:45,28:73:76.35:0,76,1487 16 30731601 . C A 293.54 . AC=8;AF=0.095;AN=84;BaseQRankSum=-24.022;DP=5253;DS;Dels=0.00;FS=1807.017;HRun=1;HaplotypeScore=8.3953;InbreedingCoeff=-0.1181;MQ=58.45;MQ0=0;MQRankSum=-1.836;QD=0.36;ReadPosRankSum=-4.842 GT:AD:DP:GQ:PL 0/0:85,16:101:99:0,127,2570 0/1:59,26:85:62.39:62,0,1673 0/0:88,19:107:99:0,152,2372 0/0:178,41:219:99:0,106,5470 0/0:168,39:207:99:0,196,5073 0/0:174,37:211:99:0,216,5031 0/0:149,24:173:99:0,285,4492 0/0:159,41:200:99:0,224,4633 0/0:73,23:96:94.09:0,94,2110 0/0:80,19:100:56.62:0,57,2099 0/0:77,26:103:88.20:0,88,2195 0/0:58,14:72:87.47:0,87,1701 0/0:47,11:58:27.83:0,28,1209 0/0:79,21:100:12.02:0,12,2318 0/0:152,45:197:1.03:6,0,4664 0/0:69,16:85:38.92:0,39,2043 0/0:76,23:99:83.83:0,84,2087 0/0:69,12:81:99:0,157,2101 0/1:113,32:145:53.45:53,0,3341 0/0:186,22:208:99:0,261,5084 0/0:125,26:151:88.10:0,88,3167 0/0:118,26:144:99:0,105,3410 0/0:187,24:211:99:0,307,6286 0/0:138,29:167:99:0,246,4149 0/0:150,24:174:99:0,188,4392 0/0:159,22:181:99:0,268,5186 0/1:63,20:83:98.11:98,0,1777 0/0:65,12:77:51.30:0,51,1846 0/1:56,20:76:26.55:27,0,1425 0/0:56,19:75:65.45:0,65,1842 0/0:51,16:67:51.32:0,51,1568 0/0:176,25:201:99:0,200,4487 0/1:102,29:131:30.19:30,0,2718 0/0:57,22:79:57.50:0,58,1672 0/0:72,12:84:99:0,111,2000 0/1:87,28:115:15.22:15,0,2516 0/0:118,27:146:12.32:0,12,3042 0/0:70,16:86:67.41:0,67,2054 0/1:68,25:93:43.16:43,0,1778 0/0:82,19:101:49.57:0,50,2494 0/0:67,15:82:99:0,148,2005 0/1:62,19:82:82.43:82,0,1749 16 30731617 . A C 220.17 . AC=7;AF=0.083;AN=84;BaseQRankSum=-25.717;DP=4753;DS;Dels=0.00;FS=19.303;HRun=6;HaplotypeScore=15.8983;InbreedingCoeff=-0.1201;MQ=58.03;MQ0=0;MQRankSum=-1.786;QD=0.24;ReadPosRankSum=-1.688 GT:AD:DP:GQ:PL 0/1:55,50:106:55.86:56,0,1289 0/0:43,25:68:60.96:0,61,1166 0/0:52,37:91:25.88:0,26,1372 0/1:114,110:225:55.53:56,0,2660 0/0:94,86:180:94.64:0,95,2503 0/0:108,67:177:91.60:0,92,2425 0/0:75,60:138:30.79:0,31,1794 0/0:92,74:171:36.22:0,36,2078 0/0:65,38:103:99:0,114,1763 0/1:49,39:88:60.22:60,0,1065 0/1:51,36:89:62.63:63,0,1247 0/0:38,29:68:99:0,102,1076 0/0:31,19:53:0.27:0,0,718 0/0:58,31:90:79.18:0,79,1412 0/0:147,70:218:57.79:0,58,3951 0/0:48,35:83:1.12:0,1,1273 0/0:54,29:84:75.03:0,75,1338 0/0:59,22:82:82.34:0,82,1592 0/1:84,37:123:53.58:54,0,2188 0/0:126,70:199:99:0,111,3122 0/0:60,48:111:2.49:0,2,1621 0/0:89,31:120:99:0,185,2254 0/1:112,98:211:26.74:27,0,2488 0/0:74,64:138:1.43:4,0,1522 0/0:89,58:150:99:0,125,1962 0/0:97,65:162:99:0,157,2212 0/0:42,26:68:36.19:0,36,1037 0/0:46,24:73:69.99:0,70,1208 0/0:39,24:65:71.96:0,72,1073 0/1:32,29:61:15.34:15,0,793 0/0:39,23:62:41.27:0,41,1105 0/0:148,48:200:99:0,295,3713 0/0:67,57:124:18.41:0,18,1514 0/0:41,22:63:27.75:0,28,1124 0/0:46,29:76:43.29:0,43,1116 0/0:46,39:87:39.56:0,40,1249 0/0:91,45:137:91.63:0,92,2452 0/0:58,34:92:20.60:0,21,1447 0/0:45,28:74:19.43:0,19,990 0/0:69,27:97:99:0,177,1897 0/0:43,27:71:99:0,104,1343 0/0:47,26:73:38.60:0,39,1263 16 30731626 . C A 788.89 . AC=6;AF=0.071;AN=84;BaseQRankSum=-28.558;DP=5552;DS;Dels=0.00;FS=330.085;HRun=2;HaplotypeScore=19.0833;InbreedingCoeff=-0.1090;MQ=58.25;MQ0=0;MQRankSum=-1.486;QD=0.92;ReadPosRankSum=-6.512 GT:AD:DP:GQ:PL 0/0:106,21:128:99:0,176,2504 0/0:69,12:82:99:0,129,1751 0/0:78,17:95:99:0,133,1910 0/0:196,51:250:99:0,200,3450 0/0:185,61:249:99:0,321,4492 0/0:166,26:192:99:0,204,3293 0/0:125,28:153:99:0,149,2665 0/0:172,36:208:99:0,261,3422 0/0:92,20:112:5.61:0,6,2190 0/0:64,13:80:4.50:0,5,1349 0/0:74,16:91:99:0,105,1953 0/1:69,23:92:18.22:18,0,1524 0/0:46,10:57:58.05:0,58,1211 0/0:93,15:108:99:0,126,2183 0/1:168,81:250:99:233,0,3543 0/1:68,21:89:14.78:15,0,1753 0/0:76,15:92:94.69:0,95,1876 0/0:74,22:97:1.71:3,0,1736 0/1:131,52:185:99:331,0,3099 0/0:197,20:220:99:0,318,4796 0/1:100,56:157:99:262,0,2400 0/0:112,16:128:99:0,227,2777 0/0:183,67:250:99:0,203,4045 0/0:135,35:171:99:0,192,2937 0/0:154,25:179:99:0,272,3480 0/0:149,30:179:99:0,207,3472 0/0:71,11:82:99:0,130,1689 0/0:73,14:87:63.18:0,63,1808 0/0:63,22:85:12.19:0,12,1358 0/0:61,8:69:87.10:0,87,1478 0/1:62,18:80:31.10:31,0,1429 0/0:194,25:222:99:0,336,4773 0/0:117,9:126:99:0,236,2903 0/0:57,15:74:73.91:0,74,1278 0/0:74,24:98:62.97:0,63,1823 0/0:82,19:102:16.52:0,17,1983 0/0:126,34:160:1.17:5,0,2751 0/0:84,16:100:99:0,124,1977 0/0:70,19:89:3.52:0,4,1415 0/0:87,25:113:99:0,101,2065 0/0:73,13:86:95.99:0,96,1977 0/0:68,17:85:48.31:0,48,1317 16 30764845 . T C 5.85 . AC=1;AF=0.012;AN=84;BaseQRankSum=-20.430;DP=2771;Dels=0.00;FS=510.304;HRun=2;HaplotypeScore=1.6337;InbreedingCoeff=-0.0147;MQ=59.02;MQ0=0;MQRankSum=-1.070;QD=0.08;ReadPosRankSum=-15.299 GT:AD:DP:GQ:PL 0/0:38,13:51:99:0,105,1236 0/0:34,11:45:58.62:0,59,1018 0/0:32,9:41:81.23:0,81,966 0/0:80,27:108:99:0,164,2526 0/0:62,36:98:99:0,118,2059 0/0:77,19:96:99:0,183,2278 0/0:68,9:77:99:0,162,2015 0/0:69,18:88:99:0,157,2154 0/0:36,17:53:33.06:0,33,1020 0/0:33,17:50:7.36:0,7,938 0/0:39,9:48:90.22:0,90,1070 0/0:28,13:41:39.86:0,40,901 0/0:39,17:56:36.70:0,37,1269 0/0:32,10:42:81.22:0,81,983 0/0:135,57:192:99:0,250,3838 0/0:34,10:44:38.93:0,39,1020 0/0:46,13:59:99:0,123,1476 0/0:30,10:40:55.12:0,55,924 0/1:55,17:72:50.73:51,0,1765 0/0:58,24:82:43.33:0,43,1623 0/0:63,26:89:99:0,115,1919 0/0:50,10:60:99:0,105,1480 0/0:91,39:130:99:0,214,2700 0/0:55,14:69:99:0,117,1464 0/0:84,17:101:99:0,204,2559 0/0:70,26:96:99:0,171,2151 0/0:21,7:28:59.77:0,60,704 0/0:32,13:45:71.60:0,72,1103 0/0:33,8:42:63.85:0,64,1038 0/0:50,10:61:75.04:0,75,1443 0/0:31,11:43:38.87:0,39,944 0/0:73,15:88:99:0,170,2045 0/0:61,12:74:99:0,141,1711 0/0:39,14:53:25.24:0,25,1005 0/0:33,18:51:50.71:0,51,901 0/0:29,14:43:13.19:0,13,832 0/0:50,27:77:56.89:0,57,1624 0/0:37,10:47:71.23:0,71,1156 0/0:32,9:41:68.59:0,69,1054 0/0:33,13:46:44.90:0,45,1044 0/0:31,14:45:19.03:0,19,853 0/0:43,16:59:99:0,117,1397 16 30772594 . G A 297.13 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.805;DP=867;Dels=0.00;FS=3.034;HRun=0;HaplotypeScore=0.7048;InbreedingCoeff=-0.0124;MQ=58.79;MQ0=0;MQRankSum=0.492;QD=15.64;ReadPosRankSum=-1.639 GT:AD:DP:GQ:PL 0/0:13,0:13:36.10:0,36,437 0/0:10,0:10:30.09:0,30,365 0/0:9,0:9:24.07:0,24,296 0/0:42,0:42:99:0,120,1546 0/0:32,0:32:93.29:0,93,1220 0/0:23,0:23:66.21:0,66,869 0/0:29,0:29:84.25:0,84,1056 0/0:36,0:36:99:0,108,1407 0/0:9,0:9:27.08:0,27,329 0/0:14,0:14:42.11:0,42,510 0/0:15,0:15:42.13:0,42,526 0/0:12,0:12:36.12:0,36,458 0/0:16,0:16:48.12:0,48,579 0/0:16,0:16:45.14:0,45,567 0/0:51,0:51:99:0,144,1782 0/0:18,0:18:51.16:0,51,624 0/0:11,0:11:33.10:0,33,416 0/0:15,0:15:39.12:0,39,488 0/0:23,0:23:57.18:0,57,708 0/0:20,0:20:60.18:0,60,729 0/0:26,0:26:75.23:0,75,935 0/0:19,0:20:57.14:0,57,668 0/0:53,0:53:99:0,159,2101 0/0:29,0:29:81.26:0,81,1060 0/0:33,1:34:64.07:0,64,1253 0/0:20,0:20:60.19:0,60,784 0/0:12,0:12:36.12:0,36,461 0/0:16,0:16:45.14:0,45,568 0/0:15,0:15:45.14:0,45,558 0/0:12,0:12:36.11:0,36,453 0/0:16,0:16:45.13:0,45,552 0/0:31,0:31:90.28:0,90,1130 0/0:18,0:18:51.15:0,51,615 0/0:19,0:19:54.17:0,54,670 0/0:9,0:9:21.07:0,21,263 0/1:8,11:19:99:343,0,217 0/0:27,0:27:75.23:0,75,925 0/0:20,0:20:60.17:0,60,728 0/0:6,0:6:18.06:0,18,224 0/0:13,0:13:39.12:0,39,494 0/0:15,0:15:45.14:0,45,551 0/0:22,0:22:63.20:0,63,782 16 30772623 . G A 84.82 . AC=10;AF=0.119;AN=84;BaseQRankSum=-8.286;DP=853;Dels=0.00;FS=69.747;HRun=2;HaplotypeScore=0.4287;InbreedingCoeff=-0.1936;MQ=58.14;MQ0=0;MQRankSum=-1.005;QD=0.39;ReadPosRankSum=-3.746 GT:AD:DP:GQ:PL 0/0:12,4:16:2.38:0,2,227 0/1:8,2:10:15.40:15,0,166 0/0:6,0:6:12:0,12,121 0/1:30,14:44:33.49:33,0,740 0/0:26,9:35:48.08:0,48,566 0/0:30,7:37:28.44:0,28,568 0/0:22,8:30:32.41:0,32,560 0/0:31,7:38:1.44:4,0,523 0/1:9,6:15:9.61:10,0,166 0/0:13,1:14:36:0,36,362 0/0:14,2:16:1.64:3,0,278 0/0:6,1:7:6.02:0,6,71 0/0:11,1:12:30.07:0,30,361 0/0:15,1:16:27.08:0,27,333 0/1:34,17:51:48.65:49,0,795 0/0:14,5:19:1.65:3,0,280 0/0:10,2:12:24.01:0,24,235 0/0:6,1:7:12.04:0,12,149 0/1:11,6:17:9.92:10,0,259 0/0:20,4:24:33.09:0,33,387 0/0:19,2:21:45.13:0,45,544 0/0:17,6:23:36.05:0,36,392 0/0:33,8:42:32.60:0,33,744 0/0:21,5:26:39.10:0,39,481 0/0:17,5:22:30.08:0,30,374 0/0:17,6:23:11.39:0,11,371 0/0:11,2:13:2.71:1,0,230 0/1:10,4:14:11.21:11,0,214 0/0:7,2:9:15:0,15,161 0/0:9,3:12:18.05:0,18,215 0/0:12,3:15:2.68:0,3,380 0/0:35,8:43:69.15:0,69,787 0/0:8,1:9:15.05:0,15,184 0/1:6,4:10:10.65:11,0,135 0/1:9,4:13:6.38:6,0,245 0/1:7,3:11:12.40:12,0,171 0/1:28,7:35:41.35:41,0,783 0/0:15,5:20:36.08:0,36,403 0/0:10,2:12:21.04:0,21,241 0/0:15,1:16:36.08:0,36,421 0/0:17,3:20:1.54:0,2,335 0/0:15,3:18:29.30:0,29,329 16 30780828 . A G 41472.54 . AC=84;AF=1.000;AN=84;DP=1168;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.8249;InbreedingCoeff=-0.0000;MQ=59.09;MQ0=0;QD=35.51 GT:AD:DP:GQ:PL 1/1:0,26:26:69.21:864,69,0 1/1:0,19:19:51.15:634,51,0 1/1:0,17:17:42.11:513,42,0 1/1:0,57:57:99:2123,163,0 1/1:0,45:45:99:1752,132,0 1/1:0,29:29:84.26:1097,84,0 1/1:0,22:22:60.17:771,60,0 1/1:0,46:46:99:1658,126,0 1/1:0,18:18:54.17:679,54,0 1/1:0,13:13:36.10:436,36,0 1/1:0,16:16:45.15:585,45,0 1/1:0,22:22:60.16:728,60,0 1/1:0,11:11:30.10:385,30,0 1/1:0,31:31:81.26:1034,81,0 1/1:0,66:66:99:2437,193,0 1/1:0,21:21:63.20:790,63,0 1/1:0,24:24:72.23:904,72,0 1/1:0,21:21:60.19:763,60,0 1/1:0,38:38:99:1297,108,0 1/1:0,58:58:99:1880,150,0 1/1:0,32:32:81.25:1022,81,0 1/1:0,25:25:72.22:890,72,0 1/1:0,46:46:99:1693,129,0 1/1:0,34:34:96.30:1255,96,0 1/1:0,29:29:87.28:1145,87,0 1/1:0,26:26:75.24:989,75,0 1/1:0,13:13:39.12:481,39,0 1/1:0,25:25:72.22:895,72,0 1/1:0,20:20:57.18:720,57,0 1/1:0,14:14:42.13:532,42,0 1/1:0,21:21:57.18:726,57,0 1/1:0,34:34:87.25:1088,87,0 1/1:0,40:40:99:1467,117,0 1/1:0,21:21:54.16:674,54,0 1/1:0,18:18:51.16:659,51,0 1/1:0,20:20:57.17:718,57,0 1/1:0,32:32:84.26:1036,84,0 1/1:0,30:30:81.25:1019,81,0 1/1:0,29:29:84.27:1068,84,0 1/1:0,20:20:54.16:654,54,0 1/1:0,22:22:63.20:801,63,0 1/1:0,17:17:48.15:612,48,0 16 30958481 . G A 261.71 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.788;DP=602;Dels=0.00;FS=2.782;HRun=0;HaplotypeScore=0.7974;InbreedingCoeff=-0.0220;MQ=58.92;MQ0=1;MQRankSum=-0.794;QD=13.77;ReadPosRankSum=1.257 GT:AD:DP:GQ:PL 0/0:9,0:9:27.07:0,27,306 0/0:5,0:5:15.04:0,15,169 0/0:6,0:6:18.05:0,18,210 0/0:31,0:31:75.23:0,75,921 0/0:38,0:38:93.28:0,93,1169 0/0:28,0:28:57.18:0,57,734 0/0:25,0:25:66.15:0,66,722 0/0:37,0:37:87.25:0,87,1081 0/0:12,0:12:36.09:0,36,405 0/0:7,0:7:18.03:0,18,187 0/0:11,0:11:30.08:0,30,348 0/0:11,0:11:27.05:0,27,317 0/0:7,0:7:15.03:0,15,178 0/0:7,0:7:18.05:0,18,207 0/0:32,0:32:81.22:0,81,967 0/0:14,0:14:42.10:0,42,469 0/0:3,0:3:9.03:0,9,105 0/0:6,0:6:15.04:0,15,172 0/0:11,0:11:30.06:0,30,339 0/0:22,0:22:57.15:0,57,683 0/0:12,0:12:33.08:0,33,370 0/0:15,0:15:30.07:0,30,375 0/0:37,0:37:84.24:0,84,1029 0/0:22,0:22:60.17:0,60,716 0/0:33,0:33:72.21:0,72,903 0/0:17,0:17:45.14:0,45,561 0/0:3,0:3:6:0,6,62 0/0:9,0:9:18.04:0,18,195 0/0:10,0:10:27.06:0,27,278 0/0:8,0:8:24.01:0,24,234 0/0:16,0:16:39.11:0,39,472 0/1:9,10:19:99:308,0,202 0/0:11,0:11:27.07:0,27,324 0/0:7,0:7:18.04:0,18,203 0/0:7,0:7:18.05:0,18,211 0/0:6,0:6:18.06:0,18,220 0/0:14,0:14:27.08:0,27,317 0/0:5,0:5:12.03:0,12,129 0/0:12,0:12:33.09:0,33,394 0/0:7,0:7:18.05:0,18,201 0/0:2,0:2:6.02:0,6,76 0/0:8,0:8:24.04:0,24,248 16 31095499 . A C 144.44 . AC=10;AF=0.119;AN=84;BaseQRankSum=-1.501;DP=465;Dels=0.00;FS=239.170;HRun=2;HaplotypeScore=0.4357;InbreedingCoeff=-0.1574;MQ=58.68;MQ0=0;MQRankSum=-0.954;QD=1.17;ReadPosRankSum=-7.495 GT:AD:DP:GQ:PL 0/0:10,4:14:26.49:0,26,270 0/0:5,0:5:15.04:0,15,169 0/0:4,1:5:12.04:0,12,143 0/0:13,4:17:9.48:0,9,389 0/0:8,2:10:21.05:0,21,240 0/0:8,3:11:24.08:0,24,302 0/1:8,2:10:10.29:10,0,223 0/0:6,0:6:15.05:0,15,184 0/0:8,1:9:24.07:0,24,288 0/0:4,0:4:9.03:0,9,105 0/1:6,2:8:11.44:11,0,191 0/1:6,3:9:19.74:20,0,163 0/1:4,2:6:20.17:20,0,93 0/0:8,3:11:24.07:0,24,279 0/0:27,10:37:72.64:0,73,799 0/0:5,1:6:12.04:0,12,144 0/0:9,1:10:27.08:0,27,319 0/0:6,2:8:18.01:0,18,191 0/0:13,0:13:39.12:0,39,459 0/1:14,11:25:99:99,0,395 0/1:11,5:16:35.43:35,0,290 0/1:6,2:8:14.98:15,0,151 0/0:22,6:28:66.15:0,66,733 0/0:8,1:9:24.08:0,24,298 0/0:11,2:13:33.08:0,33,380 0/0:5,1:6:15.05:0,15,184 0/0:5,2:7:15.04:0,15,170 0/0:8,2:10:1.10:5,0,257 0/0:8,0:8:24.07:0,24,277 0/0:8,1:9:24.06:0,24,270 0/0:4,2:6:12.04:0,12,143 0/1:16,10:26:23.24:23,0,450 0/0:2,0:2:6.02:0,6,70 0/0:5,0:5:12.04:0,12,150 0/1:4,2:6:24.10:24,0,84 0/1:7,2:9:11.43:11,0,201 0/0:21,3:24:60.16:0,60,709 0/0:4,0:4:12.04:0,12,146 0/0:13,2:15:39.12:0,39,465 0/0:6,1:7:18.05:0,18,206 0/0:14,1:15:42.12:0,42,479 0/0:5,2:7:15.04:0,15,171 16 31096164 . G C 1760.17 . AC=24;AF=0.308;AN=78;BaseQRankSum=-1.343;DP=240;Dels=0.00;FS=2.535;HRun=0;HaplotypeScore=0.1817;InbreedingCoeff=-0.0318;MQ=58.80;MQ0=0;MQRankSum=0.634;QD=13.86;ReadPosRankSum=-0.602 GT:AD:DP:GQ:PL 1/1:0,3:3:9.03:114,9,0 0/1:4,3:7:96.14:96,0,125 0/0:8,0:8:18.05:0,18,213 0/0:5,0:5:15.05:0,15,190 0/0:3,0:3:6.01:0,6,68 0/0:4,0:4:12.04:0,12,164 0/1:2,2:4:32.73:62,0,33 0/0:4,0:4:12.04:0,12,155 0/1:1,2:3:29.55:66,0,30 1/1:0,6:6:15.05:191,15,0 0/0:5,0:5:15.04:0,15,178 1/1:0,3:3:9.02:100,9,0 0/0:2,0:2:6.02:0,6,77 0/1:4,2:6:59.84:60,0,123 0/0:31,0:31:81.25:0,81,1041 0/1:6,1:7:11.43:11,0,206 0/0:2,0:2:6.02:0,6,76 0/0:5,0:6:15.05:0,15,184 0/1:7,1:8:24.27:24,0,156 0/1:8,6:14:99:158,0,269 0/1:2,5:7:14.45:158,0,14 0/1:3,6:9:51.29:191,0,51 0/0:7,0:7:21.07:0,21,283 0/0:4,0:4:12.04:0,12,162 ./. 0/1:2,3:5:67.44:85,0,67 0/0:4,0:4:9.03:0,9,108 ./. 0/0:2,0:2:6.02:0,6,76 0/0:4,0:4:12.04:0,12,152 0/1:5,1:6:24.94:25,0,107 0/1:1,5:6:22.75:147,0,23 0/1:7,2:9:49.37:49,0,166 0/0:3,0:3:9.02:0,9,100 ./. 0/1:3,6:9:56.05:166,0,56 0/0:7,0:7:21.07:0,21,268 0/1:2,1:3:22.52:23,0,69 0/0:5,0:5:15.05:0,15,194 0/1:5,1:6:15.39:15,0,142 0/0:7,0:7:21.06:0,21,249 1/1:0,6:6:15.05:201,15,0 16 31096300 . C T 208.25 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.040;DP=386;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3419;InbreedingCoeff=-0.0391;MQ=58.37;MQ0=0;MQRankSum=0.437;QD=9.92;ReadPosRankSum=1.175 GT:AD:DP:GQ:PL 0/0:9,0:9:24.07:0,24,280 0/0:6,0:6:15.04:0,15,178 0/0:3,0:3:9.01:0,9,94 0/0:18,0:18:45.15:0,45,595 0/0:11,0:11:30.10:0,30,399 0/0:10,0:10:27.09:0,27,358 0/0:6,0:6:18.05:0,18,230 0/0:7,0:7:18.06:0,18,245 0/0:10,0:10:27.09:0,27,350 0/0:3,0:3:9.03:0,9,110 0/0:13,0:13:33.10:0,33,402 0/0:6,0:6:15.04:0,15,184 0/0:3,0:3:9.03:0,9,107 0/0:10,0:10:27.07:0,27,308 0/0:33,0:33:84.22:0,84,1007 0/0:14,0:14:42.12:0,42,495 0/0:5,0:5:6.02:0,6,83 0/1:5,3:8:80.24:80,0,149 0/1:7,6:13:99:190,0,141 0/0:11,0:11:30.09:0,30,362 0/0:17,0:17:45.09:0,45,506 0/0:9,0:9:24.08:0,24,305 0/0:19,0:19:54.15:0,54,669 0/0:6,0:6:12.04:0,12,160 0/0:10,0:10:30.10:0,30,394 0/0:6,0:6:18.06:0,18,239 0/0:7,0:7:21.06:0,21,259 0/0:4,0:4:12.04:0,12,148 0/0:6,0:6:15.05:0,15,189 0/0:3,0:3:9.03:0,9,114 0/0:10,0:10:27.08:0,27,320 0/0:9,0:9:27.08:0,27,331 0/0:15,1:16:9:0,9,473 0/0:7,0:7:18.06:0,18,218 0/0:6,0:6:18.05:0,18,220 0/0:8,0:8:18.05:0,18,219 0/0:9,0:9:24.07:0,24,289 0/0:6,0:6:18.05:0,18,213 0/0:9,0:9:27.08:0,27,319 0/0:5,0:5:15.03:0,15,173 0/0:9,0:9:24.07:0,24,290 0/0:6,0:6:18.05:0,18,215 16 31121793 . G A 42388.67 . AC=38;AF=0.452;AN=84;BaseQRankSum=-16.419;DP=3156;DS;Dels=0.00;FS=1.274;HRun=0;HaplotypeScore=2.5390;InbreedingCoeff=-0.0572;MQ=59.24;MQ0=0;MQRankSum=-0.241;QD=18.49;ReadPosRankSum=-1.658 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,156,1824 0/1:27,28:55:99:661,0,672 1/1:0,60:60:99:1895,159,0 0/0:106,0:106:99:0,295,3721 0/0:103,0:103:99:0,280,3636 0/0:77,0:77:99:0,217,2849 0/0:53,0:54:99:0,147,1876 0/1:23,37:60:99:965,0,624 0/1:29,38:67:99:967,0,744 0/0:60,0:60:99:0,168,1993 1/1:0,68:68:99:2161,184,0 0/0:52,0:52:99:0,153,1832 0/0:61,0:61:99:0,177,2059 0/1:34,34:69:99:909,0,936 1/1:0,193:194:99:6168,535,0 0/1:33,39:72:99:1101,0,903 1/1:1,68:70:99:2252,162,0 0/1:18,18:36:99:480,0,518 0/0:94,0:96:99:0,265,3194 0/1:68,64:132:99:1578,0,1788 0/1:43,67:110:99:1838,0,1175 0/1:32,42:74:99:1129,0,828 0/1:68,55:123:99:1461,0,2122 0/1:47,24:72:99:558,0,1451 0/1:43,32:75:99:843,0,1255 0/0:64,1:65:99:0,138,2214 1/1:0,54:54:99:1709,141,0 0/1:39,43:82:99:1129,0,1105 0/1:18,28:47:99:791,0,430 1/1:0,54:54:99:1755,147,0 0/1:36,33:69:99:923,0,950 0/1:52,52:104:99:1303,0,1292 0/1:38,37:76:99:947,0,996 1/1:0,57:57:99:1865,153,0 0/1:28,21:49:99:475,0,767 0/1:24,39:64:99:1143,0,604 0/1:40,66:107:99:1818,0,1087 0/0:66,0:66:99:0,186,2165 0/1:28,33:61:99:882,0,719 0/1:35,33:69:99:781,0,1018 1/1:1,62:63:99:1902,132,0 0/0:66,0:67:99:0,183,2139 16 31139386 . C CG 106.20 . AC=5;AF=0.060;AN=84;BaseQRankSum=-2.932;DP=1514;FS=302.065;HRun=2;HaplotypeScore=92.8529;InbreedingCoeff=-0.0959;MQ=58.11;MQ0=0;MQRankSum=0.572;QD=0.91;ReadPosRankSum=-7.495 GT:AD:DP:GQ:PL 0/1:27,0:27:43.61:44,0,306 0/1:19,0:19:74.40:74,0,227 0/1:22,0:23:24.72:25,0,253 0/0:91,1:92:99:0,129,1529 0/0:79,1:80:99:0,105,1245 0/0:50,0:49:84.26:0,84,1041 0/0:53,0:52:63.88:0,64,1011 0/0:52,0:52:66.12:0,66,783 0/0:29,0:29:42.11:0,42,508 0/0:30,0:30:44.80:0,45,531 0/0:18,0:18:5.11:0,5,275 0/0:18,1:19:30.09:0,30,371 0/0:21,0:21:12.16:0,12,385 0/0:17,0:17:1.11:0,1,237 0/0:65,11:76:94.47:0,94,1428 0/0:22,0:22:5.11:0,5,276 0/0:40,0:40:35.23:0,35,726 0/0:21,0:21:10.18:0,10,376 0/0:30,0:31:32.34:0,32,398 0/0:54,0:54:96.23:0,96,1158 0/0:24,0:24:45.14:0,45,556 0/0:23,0:23:34.35:0,34,412 0/0:106,2:108:99:0,168,2034 0/0:38,0:38:60.10:0,60,707 0/0:57,1:58:95.27:0,95,1159 0/0:39,0:39:51.14:0,51,619 0/0:20,0:20:33.10:0,33,409 0/0:24,0:24:30.09:0,30,372 0/1:22,8:29:48.82:49,0,332 0/0:26,0:26:36.11:0,36,446 0/0:32,0:32:1.60:4,0,506 0/0:47,0:47:26.49:0,26,1030 0/0:25,0:25:20.38:0,20,550 0/0:32,0:32:48.14:0,48,584 0/0:29,0:29:45.13:0,45,547 0/0:25,0:25:39.12:0,39,483 0/0:34,0:46:27.27:0,27,761 0/0:22,0:22:5.22:0,5,338 0/0:31,2:33:45.14:0,45,558 0/0:18,0:18:2.13:0,2,259 0/1:14,4:18:17.16:17,0,229 0/0:22,1:23:33.10:0,33,402 16 31139388 . GCAGCCCCCC G 47.71 . AC=3;AF=0.036;AN=84;BaseQRankSum=-4.283;DP=1297;FS=285.013;HRun=0;HaplotypeScore=220.3955;InbreedingCoeff=-0.0664;MQ=58.80;MQ0=0;MQRankSum=-0.122;QD=0.80;ReadPosRankSum=-8.047 GT:AD:DP:GQ:PL 0/1:22,0:22:37.49:37,0,1631 0/1:16,0:16:71.39:71,0,1150 0/1:22,0:22:21.68:22,0,1205 0/0:78,0:78:99:0,138,6825 0/0:62,0:62:99:0,108,5291 0/0:44,0:43:90.30:0,90,4328 0/0:46,0:45:68.37:0,68,4422 0/0:46,0:46:66.20:0,66,3159 0/0:26,0:26:54.16:0,54,2376 0/0:31,0:31:51.05:0,51,2539 0/0:16,0:16:8.13:0,8,1326 0/0:16,0:16:33.11:0,33,1604 0/0:19,0:19:15.18:0,15,1793 0/0:16,0:16:4.13:0,4,1177 0/0:55,0:56:99:0,113,6809 0/0:17,0:17:11.14:0,11,1466 0/0:34,0:34:38.47:0,38,3054 0/0:17,0:18:10.19:0,10,1626 0/0:22,0:22:3.23:0,3,2032 0/0:49,0:49:96.32:0,96,4692 0/0:23,0:23:51.17:0,51,2486 0/0:22,0:22:27.14:0,27,1828 0/0:69,20:89:99:0,172,8460 0/0:34,0:34:63.21:0,63,3100 0/0:52,0:52:99:0,105,5181 0/0:33,0:33:63.21:0,63,3149 0/0:19,0:19:36.12:0,36,1823 0/0:22,0:22:33.10:0,33,1569 0/0:22,0:21:2.72:1,0,2279 0/0:20,0:20:39.13:0,39,1754 0/0:28,0:28:2.52:0,3,2508 0/0:46,0:46:32.53:0,33,4463 0/0:23,0:23:26.43:0,26,2633 0/0:30,0:30:51.16:0,51,2556 0/0:27,0:27:56.92:0,57,2420 0/0:21,0:21:42.14:0,42,2098 0/0:30,0:30:56.29:0,56,3681 0/0:19,0:19:14.26:0,14,1766 0/0:29,0:30:60.20:0,60,2628 0/0:14,0:14:2.15:0,2,1153 0/0:16,0:16:24.25:0,24,1470 0/0:21,0:21:33.11:0,33,1573 16 31139389 . C G 54.12 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.577;DP=1297;Dels=0.02;FS=268.951;HRun=2;HaplotypeScore=5.5137;InbreedingCoeff=-0.0579;MQ=58.80;MQ0=0;MQRankSum=-0.708;QD=1.42;ReadPosRankSum=-7.764 GT:AD:DP:GQ:PL 0/1:13,9:22:24.79:25,0,334 0/1:12,4:16:89.86:90,0,268 0/0:11,11:22:1.33:4,0,273 0/0:52,26:78:99:0,126,1683 0/0:37,25:62:99:0,102,1342 0/0:35,9:44:84.25:0,84,1108 0/0:32,14:46:60.23:0,60,1097 0/0:27,19:46:60.20:0,60,819 0/0:21,5:26:48.12:0,48,557 0/0:22,9:31:12.90:0,13,530 0/0:11,5:16:0.40:0,0,266 0/0:15,1:16:27.07:0,27,315 0/0:12,7:19:10.45:0,10,419 0/0:8,7:16:23.81:0,24,278 0/0:54,2:56:99:0,135,1698 0/0:10,7:17:6.42:0,6,339 0/0:25,9:34:58.07:0,58,721 0/0:13,5:18:5.52:0,6,394 0/0:16,6:22:18.44:0,18,479 0/0:36,12:49:93.29:0,93,1173 0/0:17,5:23:42.13:0,42,532 0/0:14,8:22:39.11:0,39,480 0/0:65,4:69:99:0,172,2301 0/0:21,13:34:57.19:0,57,783 0/0:37,15:52:99:0,99,1297 0/0:27,6:33:63.21:0,63,852 0/0:14,5:19:36.10:0,36,438 0/0:14,8:22:33.10:0,33,417 0/0:17,2:22:42.13:0,42,522 0/0:14,6:20:39.12:0,39,485 0/0:20,8:28:11.76:0,12,522 0/0:36,10:46:31.06:0,31,1000 0/0:18,5:23:15.91:0,16,575 0/0:19,11:30:51.16:0,51,643 0/0:18,9:27:48.12:0,48,572 0/0:15,6:21:42.13:0,42,529 0/0:29,1:30:75.24:0,75,949 0/0:14,5:19:9.63:0,10,444 0/0:22,7:30:57.17:0,57,710 0/0:10,4:14:1.92:3,0,269 0/0:16,0:16:33.10:0,33,411 0/0:14,7:21:33.10:0,33,419 16 31152858 . A C 13.01 . AC=5;AF=0.060;AN=84;BaseQRankSum=-20.446;DP=1864;Dels=0.00;FS=186.821;HRun=2;HaplotypeScore=0.8752;InbreedingCoeff=-0.1075;MQ=57.01;MQ0=0;MQRankSum=-0.444;QD=0.06;ReadPosRankSum=-3.945 GT:AD:DP:GQ:PL 0/0:17,9:26:16.56:0,17,473 0/0:18,10:28:28.51:0,29,592 0/0:15,11:26:12.48:0,12,417 0/0:50,39:89:94.09:0,94,1585 0/0:57,45:102:60.08:0,60,1742 0/0:46,32:78:72.94:0,73,1324 0/0:43,31:74:73.09:0,73,1357 0/0:39,33:72:53.35:0,53,1142 0/0:23,12:35:47.47:0,47,732 0/0:16,5:21:39.10:0,39,442 0/0:14,8:22:42.12:0,42,478 0/0:18,12:30:51.15:0,51,602 0/0:17,8:25:2.75:0,3,460 0/0:20,12:32:23.70:0,24,568 0/0:42,28:70:41.57:0,42,1269 0/0:14,17:31:1.69:3,0,435 0/0:22,13:35:34.63:0,35,690 0/0:13,14:27:11.44:0,11,389 0/1:30,14:44:17.57:18,0,888 0/0:43,26:69:89.90:0,90,1361 0/0:26,13:39:30.83:0,31,838 0/0:32,16:48:1.38:4,0,872 0/1:51,55:106:9.04:9,0,1470 0/0:38,20:58:69.70:0,70,1149 0/0:45,31:76:99:0,126,1465 0/0:37,30:67:0.96:6,0,1037 0/0:14,7:22:16.42:0,16,410 0/0:23,11:34:59.34:0,59,633 0/0:18,6:24:23.55:0,24,547 0/1:15,17:32:33.69:34,0,465 0/0:20,13:33:57.15:0,57,652 0/0:44,28:72:97.97:0,98,1438 0/0:27,17:44:0.19:0,0,690 0/1:16,13:30:22.82:23,0,480 0/0:15,11:26:16.39:0,16,393 0/0:23,6:30:63.14:0,63,695 0/0:31,18:49:12.38:0,12,907 0/0:20,11:31:23.70:0,24,552 0/0:15,19:34:18.43:0,18,439 0/0:18,7:25:42.12:0,42,497 0/1:14,9:23:16.12:16,0,373 0/0:19,6:25:57.11:0,57,624 16 31153105 . A G 95178.65 . AC=83;AF=0.988;AN=84;BaseQRankSum=4.962;DP=2673;Dels=0.00;FS=1.578;HRun=0;HaplotypeScore=1.9149;InbreedingCoeff=-0.0120;MQ=58.95;MQ0=0;MQRankSum=1.886;QD=35.61;ReadPosRankSum=0.896 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1554,126,0 1/1:0,45:45:99:1477,123,0 1/1:0,36:36:99:1278,102,0 1/1:0,96:96:99:3712,283,0 1/1:0,103:103:99:3904,295,0 1/1:0,85:85:99:3151,238,0 1/1:0,77:77:99:2890,217,0 1/1:0,49:49:99:1873,138,0 1/1:0,46:46:99:1687,135,0 1/1:0,46:46:99:1637,132,0 1/1:0,41:41:99:1500,120,0 1/1:0,41:41:99:1510,123,0 0/1:26,19:45:99:553,0,756 1/1:0,63:63:99:2297,187,0 1/1:0,182:183:99:6282,508,0 1/1:0,60:60:99:2164,178,0 1/1:0,62:62:99:2170,178,0 1/1:0,46:46:99:1599,129,0 1/1:0,103:104:99:3552,289,0 1/1:0,100:100:99:3593,292,0 1/1:0,87:88:99:2950,244,0 1/1:0,63:63:99:2345,190,0 1/1:0,143:143:99:5428,406,0 1/1:0,64:64:99:2413,181,0 1/1:0,69:69:99:2712,205,0 1/1:0,48:48:99:1682,126,0 1/1:0,33:33:99:1237,99,0 1/1:0,57:57:99:1971,162,0 1/1:0,41:41:99:1460,117,0 1/1:0,36:36:99:1280,105,0 1/1:0,40:40:99:1465,117,0 1/1:0,85:85:99:3161,256,0 1/1:0,61:61:99:2171,175,0 1/1:0,47:47:99:1593,129,0 1/1:0,47:47:99:1639,132,0 1/1:0,42:42:99:1545,123,0 1/1:0,70:70:99:2389,196,0 1/1:0,50:50:99:1791,147,0 1/1:0,48:48:99:1654,132,0 1/1:0,51:51:99:1854,150,0 1/1:0,53:53:99:1875,150,0 1/1:0,61:61:99:2179,175,0 16 31230461 . C T 691.09 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.182;DP=567;Dels=0.00;FS=11.335;HRun=0;HaplotypeScore=1.0559;InbreedingCoeff=-0.0279;MQ=58.33;MQ0=0;MQRankSum=0.995;QD=14.40;ReadPosRankSum=1.014 GT:AD:DP:GQ:PL 0/0:16,0:16:42.13:0,42,518 0/0:12,0:12:36.10:0,36,428 0/0:5,0:5:12.03:0,12,137 0/0:17,0:17:51.12:0,51,624 0/0:20,0:21:57.17:0,57,702 0/0:15,0:15:39.12:0,39,491 0/0:10,0:10:30.09:0,30,380 0/0:9,0:9:27.08:0,27,337 0/0:15,0:15:33.10:0,33,413 0/0:10,0:10:27.08:0,27,325 0/0:12,0:12:36.11:0,36,434 0/0:6,0:6:18.05:0,18,199 0/0:8,0:8:21.06:0,21,242 0/0:9,0:9:24.06:0,24,273 0/0:50,0:50:99:0,126,1500 0/0:9,0:9:24.05:0,24,272 0/0:6,0:6:18.05:0,18,209 0/0:15,0:15:45.11:0,45,504 0/1:16,11:27:99:291,0,491 0/1:5,16:21:99:462,0,122 0/0:18,0:18:51.12:0,51,604 0/0:18,0:18:45.12:0,45,537 0/0:17,0:17:48.12:0,48,592 0/0:10,0:10:27.08:0,27,340 0/0:10,0:10:27.08:0,27,346 0/0:9,0:9:24.08:0,24,320 0/0:6,0:6:15.04:0,15,177 0/0:4,0:4:12.03:0,12,141 0/0:12,0:12:30.09:0,30,371 0/0:8,0:8:21.07:0,21,264 0/0:15,0:15:42.13:0,42,530 0/0:24,0:24:63.17:0,63,769 0/0:15,0:15:45.12:0,45,529 0/0:10,0:10:27.07:0,27,321 0/0:11,0:11:33.10:0,33,397 0/0:9,0:9:27.07:0,27,322 0/0:30,0:30:75.18:0,75,878 0/0:10,0:10:30.08:0,30,351 0/0:4,0:4:12.03:0,12,139 0/0:10,0:10:30.09:0,30,360 0/0:14,0:14:42.12:0,42,483 0/0:10,0:10:30.08:0,30,342 16 31230463 . C T 12137.69 . AC=59;AF=0.702;AN=84;BaseQRankSum=-12.193;DP=582;Dels=0.00;FS=3.847;HRun=0;HaplotypeScore=1.0135;InbreedingCoeff=-0.3118;MQ=58.26;MQ0=0;MQRankSum=2.848;QD=21.18;ReadPosRankSum=0.136 GT:AD:DP:GQ:PL 0/1:7,10:17:99:274,0,217 0/1:6,5:11:99:138,0,183 0/1:1,4:5:18.39:125,0,18 1/1:0,17:17:48.11:557,48,0 1/1:0,21:22:63.13:680,63,0 0/1:8,8:16:99:190,0,214 1/1:0,11:11:33.09:376,33,0 0/1:5,5:10:99:152,0,100 0/1:9,8:17:99:195,0,238 0/1:4,6:10:99:141,0,119 0/1:4,8:12:99:248,0,120 0/1:4,2:6:41:41,0,126 1/1:0,9:9:24.07:284,24,0 0/1:5,4:9:99:119,0,120 0/1:22,31:53:99:839,0,524 0/0:9,0:9:21.07:0,21,263 1/1:0,6:6:18.03:197,18,0 1/1:0,15:15:42.11:471,42,0 0/1:10,15:25:99:450,0,273 0/1:18,3:21:38.91:39,0,547 0/1:8,11:19:99:266,0,214 1/1:0,19:19:48.13:562,48,0 1/1:0,19:19:51.12:585,51,0 1/1:0,13:13:33.10:398,33,0 0/1:6,4:10:91.63:92,0,208 1/1:0,8:8:21.06:257,21,0 1/1:0,6:6:15.05:178,15,0 0/1:1,4:5:23.53:124,0,24 1/1:0,13:13:33.10:401,33,0 1/1:0,7:7:21.06:247,21,0 0/1:8,6:14:99:178,0,231 0/1:12,10:22:99:288,0,334 0/1:9,7:16:99:192,0,286 1/1:0,10:10:27.08:315,27,0 0/1:6,6:12:99:138,0,196 1/1:0,9:9:24.07:286,24,0 1/1:0,29:29:72.19:854,72,0 0/1:4,6:10:99:174,0,123 0/1:1,4:5:23.53:120,0,24 1/1:0,10:10:30.08:332,30,0 1/1:0,14:14:42.13:493,42,0 0/1:5,6:11:99:142,0,155 16 31230816 . C A 290.35 . AC=18;AF=0.214;AN=84;BaseQRankSum=-10.365;DP=832;Dels=0.00;FS=36.053;HRun=2;HaplotypeScore=0.7980;InbreedingCoeff=-0.3033;MQ=57.52;MQ0=0;MQRankSum=-0.518;QD=0.71;ReadPosRankSum=-1.531 GT:AD:DP:GQ:PL 0/0:5,3:8:12.04:0,12,143 0/0:7,4:11:17.65:0,18,194 0/0:12,2:14:24.08:0,24,299 0/1:27,20:47:78.69:79,0,508 0/1:26,25:51:27.20:27,0,642 0/0:26,9:35:26.38:0,26,482 0/0:19,7:26:30.08:0,30,387 0/1:20,12:32:58.54:59,0,286 0/1:10,6:16:6.65:7,0,156 0/1:13,3:16:30.96:31,0,284 0/1:5,3:8:6.65:7,0,153 0/0:10,4:15:21.04:0,21,225 0/0:15,3:18:33.08:0,33,382 0/1:4,4:8:12.66:13,0,64 0/1:26,17:44:19.91:20,0,496 0/0:11,6:17:2.27:2,0,213 0/0:5,1:7:9.03:0,9,110 0/0:7,2:9:9.02:0,9,103 0/0:17,3:20:42.10:0,42,490 0/0:26,8:35:48.07:0,48,520 0/0:10,4:14:1.56:4,0,140 0/1:12,9:21:25.21:25,0,258 0/0:34,19:53:24.92:0,25,803 0/1:9,11:20:25.24:25,0,229 0/1:26,13:39:40.63:41,0,415 0/0:16,5:21:36.07:0,36,419 0/0:4,3:7:12.04:0,12,144 0/0:12,5:17:24.06:0,24,271 0/0:9,5:14:15.01:0,15,159 0/1:8,4:12:11.44:11,0,187 0/0:8,1:9:18.05:0,18,214 0/0:22,3:26:49.38:0,49,587 0/0:12,5:17:27.07:0,27,303 0/1:12,3:15:5.63:6,0,173 0/0:5,3:9:12.03:0,12,142 0/1:7,5:12:12.40:12,0,157 0/1:17,7:24:29.60:30,0,342 0/1:6,4:10:17.20:17,0,159 0/1:9,10:19:17.46:17,0,127 0/1:10,3:13:15.40:15,0,147 0/0:9,1:10:24.07:0,24,278 0/0:8,5:13:2.27:2,0,190 16 31276751 . C G 250.06 . AC=17;AF=0.213;AN=80;BaseQRankSum=-5.698;DP=285;Dels=0.00;FS=77.743;HRun=1;HaplotypeScore=0.6537;InbreedingCoeff=-0.2196;MQ=58.04;MQ0=0;MQRankSum=0.062;QD=2.38;ReadPosRankSum=-4.808 GT:AD:DP:GQ:PL ./. 0/0:4,1:5:12.04:0,12,146 0/0:2,1:3:6.02:0,6,75 0/1:7,7:14:30.33:36,0,30 0/0:8,6:14:15.05:0,15,191 0/1:6,6:12:23.86:24,0,95 0/0:4,0:4:3.01:0,3,40 0/0:3,2:5:9.03:0,9,108 0/0:1,3:4:3.01:0,3,35 0/0:3,1:4:3.01:0,3,36 0/0:4,2:6:9.03:0,9,113 0/0:4,4:8:6:0,6,62 1/1:0,4:4:3:26,3,0 0/1:3,3:6:16.69:17,0,51 0/1:4,6:10:30.35:30,0,83 0/0:6,1:7:12.04:0,12,145 0/0:4,5:9:12.04:0,12,146 0/0:3,2:5:9.01:0,9,102 0/1:4,3:7:21.65:22,0,34 0/0:11,5:16:21.07:0,21,263 0/1:2,1:3:27.42:27,0,34 0/0:3,2:5:9.03:0,9,111 0/1:3,7:10:1.76:0,3,33 0/0:6,5:11:11.82:0,12,116 0/0:3,5:8:6.01:0,6,62 0/0:8,4:12:12.04:0,12,143 0/1:1,2:3:24.42:52,0,24 0/0:2,1:3:6.02:0,6,74 0/0:3,3:6:9.03:0,9,111 0/0:3,1:4:6.01:0,6,64 0/0:7,3:10:12.04:0,12,143 0/0:6,2:8:15.05:0,15,185 ./. 0/1:2,2:4:22.52:23,0,63 0/0:4,3:7:9.01:0,9,99 0/0:4,2:6:9.03:0,9,109 0/1:4,2:6:17.47:17,0,116 0/1:1,2:3:18.68:26,0,19 0/1:5,4:9:34.35:34,0,92 0/1:1,2:3:24.58:25,0,27 0/1:2,2:4:24.43:24,0,51 0/1:6,1:7:13.62:14,0,116 16 31276763 . G C 122.75 . AC=9;AF=0.110;AN=82;BaseQRankSum=-5.594;DP=277;Dels=0.00;FS=42.122;HRun=1;HaplotypeScore=0.8569;InbreedingCoeff=-0.1752;MQ=58.89;MQ0=0;MQRankSum=-0.329;QD=1.59;ReadPosRankSum=-4.161 GT:AD:DP:GQ:PL 0/0:2,0:2:3.01:0,3,40 0/1:4,2:6:15.58:16,0,113 ./. 0/0:11,2:13:18.06:0,18,236 0/1:7,3:10:43.24:43,0,75 0/1:7,1:8:6.62:7,0,198 0/0:6,0:6:9.03:0,9,113 0/0:4,0:4:12.03:0,12,134 0/0:6,2:8:15.02:0,15,170 0/0:2,2:4:6.02:0,6,71 0/0:8,1:9:15.03:0,15,163 0/0:7,1:8:9:0,9,98 0/0:2,0:2:6.01:0,6,64 0/0:3,0:3:6.02:0,6,71 0/1:9,5:15:50.05:50,0,132 0/0:7,0:7:18.06:0,18,222 0/1:8,2:10:39.18:39,0,133 0/0:5,0:5:12.04:0,12,148 0/0:11,0:11:21.04:0,21,249 0/0:18,0:18:48.13:0,48,564 0/0:7,0:7:15.04:0,15,159 0/0:1,1:2:3.01:0,3,33 0/1:4,3:7:17.67:18,0,53 0/0:6,1:7:6:0,6,59 0/0:5,1:6:9.02:0,9,95 0/1:9,1:10:10.49:10,0,193 0/0:2,0:2:6.02:0,6,68 0/0:2,0:2:6.02:0,6,74 0/0:6,0:6:9.03:0,9,117 0/0:3,2:5:9.01:0,9,96 0/0:8,0:8:24.05:0,24,273 0/0:11,1:12:21.04:0,21,252 0/1:3,2:5:44.18:44,0,88 0/0:2,1:3:6.01:0,6,63 0/1:5,1:6:11.64:12,0,139 0/0:3,0:3:8.98:0,9,83 0/0:2,2:4:6.02:0,6,76 0/0:3,2:5:9.02:0,9,102 0/0:6,1:7:12.04:0,12,153 0/0:5,0:5:9.01:0,9,101 0/0:5,1:6:12.03:0,12,138 0/0:8,0:8:12.01:0,12,125 16 31276763 . G GC 147.36 . 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G A 1369.75 . AC=12;AF=0.143;AN=84;BaseQRankSum=-2.182;DP=404;Dels=0.00;FS=4.639;HRun=0;HaplotypeScore=0.2874;InbreedingCoeff=-0.0059;MQ=58.70;MQ0=0;MQRankSum=-0.658;QD=13.70;ReadPosRankSum=1.164 GT:AD:DP:GQ:PL 0/1:3,4:7:47.88:119,0,48 0/1:4,7:11:69.17:190,0,69 0/0:4,0:4:6.02:0,6,76 0/0:23,0:23:57.17:0,57,713 0/0:15,0:15:39.12:0,39,492 0/0:14,0:14:39.12:0,39,491 0/0:11,0:11:27.08:0,27,337 0/0:5,0:5:12.04:0,12,158 0/0:6,0:6:18.05:0,18,208 0/0:4,0:4:12.04:0,12,141 0/0:6,0:6:18.05:0,18,209 0/0:3,0:3:6.01:0,6,66 0/1:7,4:11:99:111,0,144 0/0:7,0:7:21.06:0,21,255 0/0:22,0:22:60.17:0,60,712 0/0:13,0:13:36.11:0,36,434 0/0:10,0:10:18.06:0,18,226 0/1:6,2:8:49.42:49,0,155 0/1:5,5:11:99:149,0,112 0/0:22,0:22:57.14:0,57,675 0/0:6,0:6:18.05:0,18,203 0/1:2,6:8:39.20:183,0,39 0/0:11,0:11:30.09:0,30,378 0/0:11,0:11:30.09:0,30,378 0/0:9,0:9:27.09:0,27,348 0/0:11,0:11:30.10:0,30,392 0/0:8,0:8:21.06:0,21,240 0/0:7,0:7:18.05:0,18,209 0/0:6,0:6:15.04:0,15,179 1/1:0,5:5:12.03:135,12,0 0/1:6,6:12:99:177,0,123 0/0:17,0:17:45.11:0,45,512 0/1:5,8:13:99:229,0,145 0/1:3,2:5:56.34:56,0,87 0/1:5,4:9:53.03:119,0,53 0/0:6,0:6:18.05:0,18,211 0/0:6,0:6:18.04:0,18,194 0/0:8,0:8:15.05:0,15,185 0/0:15,0:15:39.10:0,39,446 0/0:6,0:6:18.05:0,18,208 0/0:5,0:5:9.03:0,9,112 0/0:7,0:7:21.05:0,21,237 16 31336888 . C T 15658.93 . AC=17;AF=0.202;AN=84;BaseQRankSum=-16.862;DP=2819;Dels=0.00;FS=0.940;HRun=0;HaplotypeScore=2.4799;InbreedingCoeff=0.1888;MQ=59.23;MQ0=0;MQRankSum=0.773;QD=16.01;ReadPosRankSum=1.271 GT:AD:DP:GQ:PL 0/1:29,24:54:99:626,0,846 0/1:36,11:48:99:219,0,1076 0/0:50,0:51:99:0,132,1591 0/0:108,0:108:99:0,283,3751 0/0:87,0:87:99:0,247,3207 0/0:70,0:70:99:0,193,2469 0/0:61,0:61:99:0,175,2264 0/0:67,0:67:99:0,190,2492 0/0:46,0:46:99:0,123,1512 0/0:42,0:42:99:0,117,1442 0/0:53,0:53:99:0,141,1744 0/0:48,0:48:99:0,138,1685 0/1:17,25:44:99:602,0,444 0/0:37,0:37:99:0,102,1251 0/0:214,0:216:99:0,539,6627 0/0:44,0:45:99:0,117,1377 0/0:66,0:66:99:0,184,2233 0/1:26,17:45:99:425,0,734 0/1:49,60:114:99:1598,0,1150 0/0:125,0:125:99:0,316,3995 1/1:1,104:119:99:3100,265,0 1/1:0,75:77:99:2403,208,0 0/1:50,34:85:99:944,0,1475 0/0:51,0:51:99:0,147,1958 0/0:50,0:50:99:0,135,1751 0/0:55,0:55:99:0,144,1873 0/0:28,0:28:75.21:0,75,911 0/0:53,0:53:99:0,138,1724 0/0:51,0:53:99:0,132,1633 1/1:1,46:49:99:1469,129,0 0/1:23,19:43:99:555,0,611 0/1:70,68:139:99:1724,0,1875 0/1:30,28:60:99:680,0,956 0/1:28,28:57:99:804,0,816 0/1:23,20:44:99:510,0,651 0/0:42,0:44:99:0,117,1396 0/0:125,0:128:99:0,307,3733 0/0:68,0:68:99:0,183,2218 0/0:46,0:46:99:0,123,1502 0/0:46,0:46:99:0,132,1570 0/0:41,0:42:99:0,111,1381 0/0:54,0:55:99:0,147,1818 16 31367318 . T C 8366.32 . AC=6;AF=0.071;AN=84;BaseQRankSum=-16.685;DP=3582;DS;Dels=0.00;FS=11.674;HRun=2;HaplotypeScore=2.3599;InbreedingCoeff=-0.0769;MQ=59.45;MQ0=0;MQRankSum=1.121;QD=13.90;ReadPosRankSum=-1.335 GT:AD:DP:GQ:PL 0/0:62,0:62:99:0,175,2112 0/0:68,0:69:99:0,196,2366 0/0:50,0:50:99:0,132,1632 0/1:59,79:139:99:2306,0,1707 0/0:156,0:156:99:0,460,5576 0/0:138,0:138:99:0,394,4860 0/0:120,1:121:99:0,319,4272 0/0:134,0:134:99:0,394,4828 0/0:65,0:65:99:0,187,2245 0/0:55,0:55:99:0,156,1902 0/0:53,0:53:99:0,153,1834 0/0:50,0:50:99:0,150,1799 0/0:35,0:36:99:0,105,1266 0/0:51,0:51:99:0,147,1780 0/0:147,0:149:99:0,397,4727 0/0:38,0:38:99:0,99,1190 0/0:52,1:54:99:0,124,1815 0/0:57,0:57:99:0,169,2043 0/0:125,0:125:99:0,352,4206 0/0:153,0:155:99:0,436,5266 0/0:132,0:133:99:0,379,4606 0/0:88,0:88:99:0,250,2996 0/1:75,66:141:99:1938,0,2283 0/0:103,0:103:99:0,301,3650 0/0:131,0:131:99:0,361,4322 0/0:118,0:118:99:0,340,4088 0/0:56,0:56:99:0,159,1940 0/0:51,0:51:99:0,150,1794 0/0:63,0:63:99:0,178,2157 0/0:57,0:57:99:0,172,2058 0/0:53,1:54:99:0,129,1898 0/0:119,0:119:99:0,349,4232 0/0:93,0:93:99:0,268,3201 0/0:54,0:54:99:0,156,1883 0/0:47,0:47:99:0,138,1663 0/1:34,43:77:99:1016,0,1019 0/1:53,56:109:99:1359,0,1546 0/1:34,29:63:99:681,0,933 0/1:32,41:73:99:1066,0,897 0/0:63,0:63:99:0,178,2146 0/0:67,0:67:99:0,187,2252 0/0:64,0:65:99:0,190,2302 16 31371674 . G A 11077.65 . 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C T 2647.54 . AC=4;AF=0.048;AN=84;BaseQRankSum=1.735;DP=2808;Dels=0.00;FS=1.682;HRun=0;HaplotypeScore=1.8322;InbreedingCoeff=-0.0500;MQ=59.13;MQ0=0;MQRankSum=1.910;QD=12.37;ReadPosRankSum=-0.079 GT:AD:DP:GQ:PL 0/0:33,0:33:99:0,99,1100 0/0:47,0:47:99:0,132,1456 0/0:40,0:40:99:0,108,1261 0/0:151,0:151:99:0,415,5127 0/0:118,0:118:99:0,346,4336 0/0:98,0:98:99:0,289,3583 0/0:78,0:78:99:0,211,2673 0/0:98,0:98:99:0,283,3437 0/0:45,0:45:99:0,126,1422 0/0:49,0:49:99:0,141,1617 0/0:52,0:52:99:0,138,1580 0/1:15,18:33:99:464,0,375 0/1:22,18:41:99:448,0,604 0/0:39,0:39:99:0,111,1278 0/0:179,0:179:99:0,484,5528 0/0:46,0:46:99:0,126,1408 0/0:45,0:45:99:0,132,1444 0/0:43,0:43:99:0,114,1317 0/0:86,0:87:99:0,238,2721 0/0:105,0:105:99:0,265,3098 0/1:38,34:73:99:971,0,976 0/0:55,0:55:99:0,156,1753 0/0:149,0:150:99:0,424,5257 0/0:78,0:78:99:0,217,2657 0/0:118,0:118:99:0,298,3750 0/0:84,0:84:99:0,229,2840 0/0:36,0:36:99:0,102,1172 0/0:44,0:44:99:0,120,1342 0/0:46,0:46:99:0,135,1512 0/0:55,0:55:99:0,144,1619 0/0:49,0:49:99:0,126,1461 0/1:35,32:67:99:852,0,905 0/0:60,0:60:99:0,168,1910 0/0:49,0:49:99:0,132,1482 0/0:57,0:57:99:0,162,1783 0/0:69,0:69:99:0,186,2122 0/0:91,0:92:99:0,235,2734 0/0:37,0:37:99:0,105,1208 0/0:35,1:36:59.28:0,59,1020 0/0:52,0:52:99:0,150,1677 0/0:38,0:38:99:0,108,1203 0/0:36,0:36:99:0,105,1190 16 31384687 . C T 505.40 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.633;DP=2456;Dels=0.00;FS=4.655;HRun=1;HaplotypeScore=1.4215;InbreedingCoeff=-0.0120;MQ=59.20;MQ0=0;MQRankSum=0.408;QD=18.72;ReadPosRankSum=-0.923 GT:AD:DP:GQ:PL 0/0:27,0:27:69.22:0,69,892 0/0:40,0:40:99:0,99,1294 0/0:28,0:28:75.24:0,75,980 0/0:137,0:138:99:0,340,4631 0/0:124,0:124:99:0,310,4241 0/0:94,0:94:99:0,229,3110 0/0:79,0:79:99:0,205,2777 0/0:99,0:99:99:0,247,3380 0/0:36,0:36:99:0,99,1266 0/0:51,0:51:99:0,141,1800 0/0:44,0:44:99:0,120,1559 0/0:30,0:30:87.28:0,87,1106 0/1:9,18:27:99:552,0,218 0/0:35,0:35:93.30:0,93,1207 0/0:149,0:149:99:0,382,4896 0/0:32,0:32:93.29:0,93,1151 0/0:36,0:36:93.29:0,93,1195 0/0:32,0:32:87.26:0,87,1102 0/0:82,0:82:99:0,223,2841 0/0:88,0:88:99:0,229,2955 0/0:60,0:60:99:0,150,1947 0/0:59,0:59:99:0,156,1996 0/0:156,0:156:99:0,382,5200 0/0:74,0:74:99:0,187,2532 0/0:87,0:87:99:0,226,3050 0/0:78,0:78:99:0,190,2577 0/0:33,0:33:87.25:0,87,1094 0/0:29,0:29:75.24:0,75,961 0/0:30,0:30:81.26:0,81,1019 0/0:33,0:33:93.28:0,93,1152 0/0:36,0:36:96.30:0,96,1229 0/0:68,0:68:99:0,178,2254 0/0:59,0:59:99:0,156,1914 0/0:30,0:31:84.27:0,84,1079 0/0:42,0:42:99:0,105,1362 0/0:33,0:33:81.25:0,81,1053 0/0:83,0:83:99:0,205,2630 0/0:46,0:46:99:0,129,1638 0/0:39,0:39:99:0,108,1353 0/0:42,0:42:99:0,117,1487 0/0:37,0:37:93.28:0,93,1186 0/0:30,0:30:87.28:0,87,1113 16 31391120 . T C 515.52 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.379;DP=1682;Dels=0.00;FS=3.046;HRun=1;HaplotypeScore=0.9451;InbreedingCoeff=-0.0120;MQ=59.10;MQ0=0;MQRankSum=0.717;QD=12.89;ReadPosRankSum=-1.389 GT:AD:DP:GQ:PL 0/0:36,0:36:90.28:0,90,1141 0/0:43,0:43:99:0,114,1445 0/0:26,0:26:69.19:0,69,850 0/0:70,0:70:99:0,172,2279 0/0:49,0:49:99:0,132,1738 0/0:39,0:39:90.30:0,90,1243 0/0:39,0:39:96.30:0,96,1259 0/0:57,0:57:99:0,150,1981 0/0:31,2:33:39.47:0,39,968 0/0:21,0:21:60.19:0,60,748 0/0:23,0:23:60.19:0,60,768 0/0:32,0:32:90.28:0,90,1134 0/1:19,21:40:99:562,0,528 0/0:40,0:40:99:0,111,1389 0/0:120,0:120:99:0,280,3607 0/0:28,0:28:84.27:0,84,1048 0/0:28,0:28:78.23:0,78,946 0/0:25,0:25:66.21:0,66,851 0/0:53,0:53:99:0,144,1806 0/0:52,0:52:99:0,126,1608 0/0:51,0:51:99:0,114,1496 0/0:33,0:33:96.29:0,96,1167 0/0:79,0:79:99:0,214,2777 0/0:26,0:26:60.20:0,60,815 0/0:48,0:48:99:0,111,1501 0/0:30,0:30:84.24:0,84,1076 0/0:37,0:37:99:0,105,1305 0/0:36,0:36:96.29:0,96,1220 0/0:26,0:26:75.23:0,75,937 0/0:41,0:41:99:0,108,1384 0/0:25,0:25:72.23:0,72,893 0/0:47,0:47:99:0,120,1548 0/0:36,0:36:96.31:0,96,1231 0/0:31,0:31:87.28:0,87,1108 0/0:26,0:26:72.23:0,72,918 0/0:45,0:45:99:0,108,1397 0/0:40,0:40:99:0,108,1347 0/0:23,0:23:66.21:0,66,827 0/0:30,0:30:78.25:0,78,995 0/0:35,0:35:87.28:0,87,1140 0/0:37,0:37:93.30:0,93,1197 0/0:46,0:46:99:0,120,1545 16 31435881 . A C 23.51 . AC=1;AF=0.012;AN=84;BaseQRankSum=-16.214;DP=1993;Dels=0.00;FS=27.254;HRun=1;HaplotypeScore=1.2974;InbreedingCoeff=-0.0198;MQ=58.63;MQ0=0;MQRankSum=0.919;QD=0.42;ReadPosRankSum=-3.199 GT:AD:DP:GQ:PL 0/0:21,7:28:11.72:0,12,527 0/0:27,8:35:75.18:0,75,820 0/0:27,8:35:69.13:0,69,737 0/0:107,12:119:99:0,239,2904 0/0:57,10:67:99:0,121,1538 0/0:55,8:64:99:0,129,1621 0/0:48,4:52:99:0,129,1357 0/0:49,3:53:99:0,123,1340 0/0:33,6:39:84.17:0,84,904 0/0:30,4:34:78.14:0,78,822 0/0:19,13:32:54.10:0,54,563 0/0:30,5:35:75.20:0,75,859 0/0:32,2:34:90.18:0,90,979 0/0:31,7:38:81.21:0,81,917 0/0:80,31:113:79.11:0,79,1965 0/0:31,3:35:81.18:0,81,884 0/0:40,9:50:99:0,102,1074 0/0:23,5:28:35.54:0,36,644 0/0:28,10:38:2.51:1,0,659 0/0:42,4:46:99:0,114,1300 0/1:41,15:56:69.56:70,0,1108 0/0:35,7:42:93.19:0,93,991 0/0:83,22:105:99:0,222,2415 0/0:56,5:61:99:0,138,1506 0/0:67,3:71:99:0,134,1753 0/0:46,4:50:99:0,111,1170 0/0:20,2:22:48.13:0,48,532 0/0:29,10:39:81.21:0,81,910 0/0:24,1:25:72.17:0,72,790 0/0:33,8:41:59.79:0,60,982 0/0:21,12:33:33.51:0,34,616 0/0:58,3:61:99:0,138,1606 0/0:25,2:27:69.15:0,69,747 0/0:30,4:34:81.20:0,81,917 0/0:40,4:44:99:0,99,1126 0/0:41,5:47:99:0,102,1121 0/0:40,11:51:27.34:0,27,1072 0/0:35,8:43:93.24:0,93,1027 0/0:31,4:35:78.17:0,78,855 0/0:33,11:44:81.17:0,81,873 0/0:38,8:47:65.77:0,66,1008 0/0:36,3:40:96.22:0,96,1053 16 31439170 . G A 740.84 . AC=4;AF=0.048;AN=84;BaseQRankSum=-3.452;DP=879;Dels=0.00;FS=0.932;HRun=1;HaplotypeScore=0.9418;InbreedingCoeff=0.4727;MQ=58.13;MQ0=0;MQRankSum=1.496;QD=17.23;ReadPosRankSum=-0.226 GT:AD:DP:GQ:PL 0/0:18,1:19:48.14:0,48,597 0/0:16,0:16:45.15:0,45,581 0/0:15,0:15:36.11:0,36,467 0/0:55,0:55:99:0,141,1887 0/0:43,0:43:99:0,117,1563 0/0:36,0:36:96.30:0,96,1281 0/0:18,0:18:48.13:0,48,598 0/0:27,0:27:75.23:0,75,970 0/0:18,0:18:45.14:0,45,581 0/0:9,0:9:24.07:0,24,294 0/0:25,0:25:69.20:0,69,866 0/0:9,0:9:21.07:0,21,269 0/0:15,0:15:42.10:0,42,517 0/1:8,6:14:99:163,0,208 0/0:36,0:36:75.21:0,75,979 0/0:23,0:23:60.19:0,60,765 0/0:14,0:14:42.13:0,42,522 0/0:19,0:19:54.17:0,54,684 0/0:22,0:22:45.14:0,45,585 0/0:29,0:29:66.19:0,66,836 0/0:20,0:20:51.16:0,51,666 0/0:20,0:20:51.16:0,51,644 0/0:49,0:49:99:0,123,1678 0/0:23,0:23:60.18:0,60,779 0/0:37,0:37:96.30:0,96,1270 0/0:22,0:22:57.18:0,57,759 0/0:14,0:14:39.13:0,39,507 0/0:12,0:12:36.11:0,36,447 0/0:15,0:15:45.13:0,45,561 0/0:20,0:20:48.15:0,48,623 0/0:14,0:14:36.11:0,36,464 0/0:13,0:13:36.11:0,36,448 0/0:20,0:20:48.15:0,48,623 0/1:6,10:16:99:287,0,149 0/0:13,0:13:36.11:0,36,460 1/1:0,13:13:30.09:383,30,0 0/0:22,0:22:48.15:0,48,630 0/0:11,0:11:33.10:0,33,414 0/0:13,0:13:36.11:0,36,450 0/0:17,0:17:39.13:0,39,520 0/0:18,0:18:42.12:0,42,519 0/0:15,0:15:42.13:0,42,521 16 31439602 . A C 154.19 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.760;DP=421;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.5736;InbreedingCoeff=-0.0281;MQ=59.33;MQ0=0;MQRankSum=1.165;QD=6.17;ReadPosRankSum=-0.220 GT:AD:DP:GQ:PL 0/0:5,0:5:15.03:0,15,172 0/0:7,0:7:18.06:0,18,220 0/0:3,0:3:9.02:0,9,102 0/0:18,0:18:48.15:0,48,599 0/1:18,7:25:99:200,0,504 0/0:19,0:19:45.12:0,45,581 0/0:25,0:25:60.16:0,60,751 0/0:11,0:11:30.09:0,30,367 0/0:7,0:8:18.06:0,18,218 0/0:6,0:6:15.05:0,15,192 0/0:2,0:2:6.02:0,6,68 0/0:4,0:4:12.04:0,12,144 0/0:7,0:7:15.05:0,15,190 0/0:5,0:5:12.04:0,12,156 0/0:24,0:24:66.18:0,66,800 0/0:9,0:9:27.08:0,27,331 0/0:6,0:6:12.03:0,12,131 0/0:6,0:6:15.05:0,15,189 0/0:9,0:9:27.08:0,27,317 0/0:16,0:16:42.13:0,42,520 0/0:9,0:9:24.07:0,24,283 0/0:5,0:5:12.03:0,12,141 0/0:39,0:39:96.28:0,96,1202 0/0:9,0:9:18.06:0,18,235 0/0:15,0:15:30.09:0,30,376 0/0:20,0:20:45.14:0,45,580 0/0:7,0:7:21.06:0,21,248 0/0:7,0:7:21.07:0,21,260 0/0:6,0:7:18.06:0,18,221 0/0:16,0:16:36.12:0,36,474 0/0:9,0:9:27.08:0,27,318 0/0:10,0:10:24.08:0,24,314 0/0:6,0:6:15.05:0,15,188 0/0:5,0:5:12.04:0,12,151 0/0:6,0:6:15.04:0,15,183 0/0:7,0:7:18.06:0,18,218 0/0:5,0:6:12.04:0,12,143 0/0:5,0:5:15.04:0,15,178 0/0:6,0:6:15.05:0,15,192 0/0:5,0:5:12.04:0,12,147 0/0:3,0:3:9.03:0,9,112 0/0:4,0:4:9.03:0,9,119 16 31439603 . G C 145.20 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.105;DP=423;Dels=0.00;FS=1.677;HRun=1;HaplotypeScore=0.5934;InbreedingCoeff=-0.0275;MQ=59.37;MQ0=0;MQRankSum=-0.182;QD=6.05;ReadPosRankSum=-0.019 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,184 0/0:8,0:8:24.07:0,24,290 0/0:3,0:3:9.03:0,9,108 0/0:19,0:19:48.15:0,48,636 0/1:17,7:24:99:191,0,552 0/0:19,0:19:42.14:0,42,581 0/0:25,0:25:63.20:0,63,856 0/0:11,0:11:30.09:0,30,389 0/0:8,0:8:21.07:0,21,276 0/0:6,0:6:15.04:0,15,187 0/0:2,0:2:6.02:0,6,73 0/0:4,0:4:12.03:0,12,145 0/0:7,0:7:15.05:0,15,204 0/0:5,0:5:12.03:0,12,150 0/0:24,0:24:66.21:0,66,855 0/0:9,0:9:27.09:0,27,339 0/0:6,0:6:15.05:0,15,187 0/0:6,0:6:15.05:0,15,193 0/0:9,0:9:24.07:0,24,297 0/0:16,0:16:36.12:0,36,467 0/0:10,0:10:27.09:0,27,342 0/0:5,0:5:12.02:0,12,129 0/0:40,0:40:93.30:0,93,1270 0/0:10,0:10:24.04:0,24,290 0/0:13,0:13:30.10:0,30,421 0/0:19,0:19:48.16:0,48,650 0/0:7,0:7:18.05:0,18,217 0/0:7,0:7:21.07:0,21,262 0/0:7,0:7:18.05:0,18,224 0/0:17,0:17:36.11:0,36,476 0/0:9,0:9:27.09:0,27,347 0/0:10,0:10:24.08:0,24,323 0/0:6,0:6:15.04:0,15,188 0/0:4,0:4:12.04:0,12,155 0/0:7,0:7:15.05:0,15,202 0/0:7,0:7:18.06:0,18,239 0/0:5,0:5:12.04:0,12,147 0/0:6,0:6:15.03:0,15,180 0/0:6,0:6:15.05:0,15,192 0/0:5,0:5:12.04:0,12,157 0/0:3,0:3:9.03:0,9,109 0/0:4,0:4:9.03:0,9,120 16 31539927 . A T 1513.95 . 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G T 14496.43 . AC=23;AF=0.274;AN=84;BaseQRankSum=-19.854;DP=1939;Dels=0.00;FS=7.062;HRun=1;HaplotypeScore=2.6549;InbreedingCoeff=0.2215;MQ=58.74;MQ0=0;MQRankSum=6.629;QD=19.48;ReadPosRankSum=-1.462 GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,99,1229 0/0:32,0:32:93.26:0,93,1134 0/1:20,20:40:99:585,0,629 0/0:73,0:73:99:0,211,2785 0/0:61,0:61:99:0,178,2393 0/0:47,0:47:99:0,126,1674 0/0:51,0:51:99:0,150,1972 0/1:38,19:57:99:531,0,1270 1/1:0,44:44:99:1427,117,0 0/1:17,22:39:99:621,0,507 0/1:23,27:50:99:740,0,687 0/0:43,0:43:99:0,117,1495 0/1:15,12:27:99:343,0,417 0/0:38,0:38:99:0,102,1312 0/0:139,0:139:99:0,355,4521 0/0:41,0:41:99:0,117,1496 0/1:13,17:30:99:534,0,365 0/0:29,0:29:84.27:0,84,1064 0/0:71,0:71:99:0,196,2426 0/0:58,0:58:99:0,156,1946 0/1:34,44:78:99:1304,0,950 1/1:0,38:38:99:1331,114,0 0/0:89,0:89:99:0,244,3277 0/0:25,0:25:69.22:0,69,931 0/0:50,0:50:99:0,144,1899 0/0:46,0:46:99:0,132,1733 0/0:25,0:25:75.23:0,75,939 0/0:47,0:47:99:0,132,1620 0/0:49,0:49:99:0,138,1743 0/0:42,0:44:99:0,117,1460 0/0:27,0:27:72.23:0,72,912 0/1:27,26:53:99:769,0,812 0/0:36,0:36:96.30:0,96,1226 1/1:0,37:37:99:1282,105,0 0/1:21,22:43:99:633,0,610 0/1:11,20:31:99:614,0,288 1/1:0,47:47:99:1606,132,0 0/1:23,23:46:99:692,0,673 1/1:1,21:22:27.63:723,28,0 0/1:12,14:26:99:425,0,368 0/1:24,12:36:99:337,0,738 0/0:40,0:40:99:0,111,1374 16 46638332 . A G 1487.83 . 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G A 2565.74 . AC=4;AF=0.048;AN=84;BaseQRankSum=-11.905;DP=1709;Dels=0.00;FS=1.890;HRun=0;HaplotypeScore=0.6215;InbreedingCoeff=-0.0500;MQ=59.43;MQ0=0;MQRankSum=0.865;QD=12.39;ReadPosRankSum=1.080 GT:AD:DP:GQ:PL 0/0:35,0:35:87.27:0,87,1119 0/0:28,0:29:78.25:0,78,983 0/1:11,11:22:99:291,0,286 0/1:48,34:82:99:903,0,1388 0/1:37,34:71:99:939,0,1177 0/0:64,0:64:99:0,172,2349 0/0:63,0:63:99:0,172,2326 0/0:62,0:62:99:0,163,2213 0/0:23,0:23:60.19:0,60,775 0/0:34,0:34:96.29:0,96,1189 0/0:27,0:27:72.22:0,72,901 0/0:30,0:30:84.26:0,84,1053 0/0:28,0:28:75.24:0,75,961 0/0:32,0:32:81.26:0,81,1045 0/0:98,0:98:99:0,247,3147 0/0:25,0:25:69.22:0,69,861 0/0:33,0:33:93.29:0,93,1152 0/0:24,0:24:66.21:0,66,842 0/0:49,0:49:99:0,126,1597 0/0:41,0:41:99:0,105,1350 0/0:44,0:45:99:0,120,1527 0/0:25,0:25:63.20:0,63,816 0/0:80,0:80:99:0,208,2868 0/0:69,0:69:99:0,181,2488 0/0:64,0:64:99:0,175,2385 0/0:65,0:65:99:0,163,2213 0/0:20,0:20:57.18:0,57,721 0/1:14,18:32:99:519,0,371 0/0:26,0:26:66.21:0,66,844 0/0:23,0:23:69.22:0,69,851 0/0:23,0:23:66.20:0,66,822 0/0:51,0:51:99:0,117,1548 0/0:25,0:25:72.21:0,72,875 0/0:34,0:34:93.29:0,93,1176 0/0:26,0:26:66.21:0,66,843 0/0:30,0:30:87.27:0,87,1075 0/0:48,0:48:99:0,114,1479 0/0:33,0:33:90.29:0,90,1145 0/0:33,0:33:96.30:0,96,1205 0/0:27,0:27:78.24:0,78,959 0/0:35,0:35:99:0,102,1244 0/0:23,0:23:60.19:0,60,765 16 46652286 . TA T 69.33 . 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T TC 67.30 . AC=3;AF=0.036;AN=84;BaseQRankSum=11.402;DP=3934;DS;FS=3059.364;HRun=2;HaplotypeScore=253.7458;InbreedingCoeff=-0.0397;MQ=59.56;MQ0=0;MQRankSum=1.566;QD=0.22;ReadPosRankSum=-27.429 GT:AD:DP:GQ:PL 0/0:75,0:75:35.22:0,35,1861 0/0:79,0:79:77.05:0,77,2150 0/1:63,0:63:76.24:76,0,1423 0/0:160,0:160:99:0,120,3439 0/0:118,0:118:99:0,141,3135 0/0:133,0:132:99:0,178,3364 0/0:123,0:123:38.55:0,39,2865 0/0:97,0:97:99:0,188,2647 0/0:85,0:85:99:0,119,2372 0/0:62,0:62:17.96:0,18,1501 0/0:83,0:83:99:0,119,2390 0/0:58,16:74:96.77:0,97,1914 0/0:74,1:75:7.34:0,7,1867 0/0:69,1:70:29.53:0,30,1563 0/0:250,0:250:99:0,188,6043 0/0:51,0:51:93:0,93,1444 0/0:70,0:70:61.58:0,62,1726 0/0:85,0:85:73.39:0,73,2188 0/0:92,0:92:52.05:0,52,2056 0/0:121,0:121:99:0,164,3051 0/0:108,0:107:61.88:0,62,2726 0/0:79,0:79:99:0,109,2187 0/1:146,0:146:32.86:33,0,3236 0/0:133,0:131:99:0,151,3131 0/0:124,0:120:99:0,121,2985 0/0:135,0:134:89.44:0,89,3342 0/0:43,0:43:23.63:0,24,1044 0/0:73,16:89:80.54:0,81,2303 0/0:58,0:58:53.61:0,54,1394 0/0:86,0:86:99:0,100,2425 0/0:66,0:66:64.67:0,65,1816 0/0:126,0:126:99:0,179,3378 0/0:62,0:62:97.46:0,97,1507 0/0:79,0:79:99:0,112,2107 0/0:68,0:68:26.85:0,27,1660 0/0:105,0:105:41.92:0,42,2536 0/1:103,0:103:42.64:43,0,2186 0/0:89,0:89:74.25:0,74,2328 0/0:67,0:67:99:0,99,1683 0/0:51,0:51:15.84:0,16,1149 0/0:82,0:82:50.04:0,50,2049 0/0:69,0:69:54.62:0,55,1705 16 47684830 . C A 958.57 . 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A G 2220.24 . 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C T 630.99 . 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T C 12229.99 . 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G A 4591.59 . 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G A 2962.73 . AC=36;AF=0.429;AN=84;BaseQRankSum=-24.974;DP=1708;Dels=0.00;FS=1834.581;HRun=2;HaplotypeScore=1.8769;InbreedingCoeff=-0.7231;MQ=58.88;MQ0=0;MQRankSum=-0.031;QD=2.02;ReadPosRankSum=-17.444 GT:AD:DP:GQ:PL 0/1:24,19:43:99:322,0,738 0/1:27,11:38:99:107,0,784 0/1:20,9:29:38.96:39,0,568 0/1:49,22:71:99:195,0,1674 0/1:44,21:66:81.23:81,0,1604 0/1:31,11:42:2.88:0,0,1013 0/1:21,17:38:29.92:30,0,608 0/1:25,12:37:53.63:54,0,888 0/0:30,9:39:30.84:0,31,1011 0/1:21,11:32:52.04:52,0,697 0/1:17,10:27:99:132,0,557 0/1:14,6:20:73.51:74,0,436 0/1:20,11:31:46.06:46,0,633 0/1:17,8:25:64.61:65,0,557 0/1:77,32:111:99:128,0,2393 0/1:17,14:31:99:170,0,511 0/1:32,9:41:68.03:68,0,1050 0/1:18,7:25:90.18:90,0,583 0/0:37,5:42:99:0,102,1287 0/1:41,16:57:99:100,0,1098 0/0:26,7:34:58.56:0,59,965 0/1:19,12:31:99:99,0,581 0/1:40,21:61:99:199,0,1392 0/1:30,14:44:99:127,0,977 0/1:36,21:57:24.35:24,0,1136 0/1:37,25:62:99:238,0,1225 0/1:19,5:24:4.13:4,0,597 0/0:31,12:43:12.74:0,13,958 0/1:23,6:29:38.41:38,0,733 0/1:32,12:44:2.86:3,0,952 0/1:26,10:37:9.55:10,0,874 0/0:37,13:50:2.09:0,2,1144 0/1:19,11:30:57.47:57,0,532 0/1:16,9:25:70.59:71,0,474 0/1:20,8:28:99:118,0,637 0/1:28,13:41:60.20:60,0,804 0/1:29,17:46:99:102,0,844 0/1:32,10:42:19.48:19,0,1026 0/1:19,12:31:20.59:21,0,590 0/1:31,7:38:90.02:90,0,973 0/0:23,10:33:10.87:0,11,655 0/1:22,11:33:97.02:97,0,763 16 48337098 . A AG 36.78 . AC=4;AF=0.048;AN=84;BaseQRankSum=-2.789;DP=3884;DS;FS=332.766;HRun=4;HaplotypeScore=236.3055;InbreedingCoeff=-0.0865;MQ=58.89;MQ0=0;MQRankSum=1.338;QD=0.10;ReadPosRankSum=-14.206 GT:AD:DP:GQ:PL 0/0:56,0:56:0.70:8,0,722 0/0:51,0:51:0.84:7,0,553 0/0:69,0:69:16.67:0,17,1007 0/0:131,0:131:99:0,100,2229 0/0:148,0:147:99:0,121,1987 0/0:133,0:132:99:0,144,1984 0/0:89,0:88:67.40:0,67,1318 0/0:87,0:87:99:0,141,1589 0/0:77,0:77:2.63:1,0,916 0/0:72,0:72:48.50:0,49,1163 0/0:79,0:78:70.97:0,71,1040 0/0:98,1:99:78.84:0,79,1489 0/0:72,0:72:0.64:0,1,819 0/0:84,0:84:26.30:0,26,975 0/0:249,1:250:65.91:0,66,2499 0/0:80,0:80:69.56:0,70,1261 0/0:72,0:72:56.02:0,56,931 0/0:55,0:55:73.06:0,73,829 0/0:118,1:119:25.58:0,26,1059 0/0:122,0:121:99:0,181,2055 0/1:117,1:118:27.33:27,0,1209 0/0:69,0:69:43.91:0,44,1107 0/0:157,0:157:99:0,166,2524 0/0:101,0:100:99:0,144,1953 0/0:146,0:144:99:0,216,2590 0/0:93,0:92:99:0,133,1608 0/0:69,0:69:40.59:0,41,1009 0/1:92,0:92:35.66:36,0,1128 0/0:61,0:61:22.90:0,23,784 0/0:70,0:70:21.52:0,22,880 0/0:72,0:72:67.65:0,68,852 0/0:114,0:114:99:0,194,2290 0/0:87,0:87:93.33:0,93,1428 0/1:68,1:69:10.28:10,0,974 0/1:78,0:78:51.35:51,0,826 0/0:82,1:83:35.92:0,36,1282 0/0:88,0:88:61.93:0,62,883 0/0:85,0:85:38.62:0,39,1087 0/0:60,1:61:29.53:0,30,717 0/0:80,0:79:61.10:0,61,1178 0/0:69,0:69:12.68:0,13,926 0/0:76,1:77:91.94:0,92,1051 16 48337103 . T G 419.37 . AC=11;AF=0.131;AN=84;BaseQRankSum=-24.832;DP=3756;DS;Dels=0.00;FS=268.132;HRun=4;HaplotypeScore=1.6721;InbreedingCoeff=-0.1589;MQ=59.29;MQ0=0;MQRankSum=0.507;QD=0.50;ReadPosRankSum=-9.338 GT:AD:DP:GQ:PL 0/0:32,27:60:1.97:0,2,788 0/0:25,26:51:8.92:0,9,702 0/1:29,35:64:38.10:38,0,662 0/0:72,55:127:68.70:0,69,2194 0/0:67,77:144:61.13:0,61,1768 0/0:68,57:125:96.51:0,97,2008 0/0:40,54:94:90.57:0,91,1279 0/0:48,35:83:99:0,120,1365 0/1:41,33:74:48.84:49,0,890 0/0:44,31:75:54.37:0,54,1279 0/0:43,31:75:63.61:0,64,1000 0/0:54,43:98:76.26:0,76,1463 0/0:33,34:67:18.98:0,19,780 0/0:37,34:71:48.05:0,48,1013 0/0:107,129:236:45.79:0,46,3024 0/0:41,36:77:20.76:0,21,1034 0/0:34,39:73:26.45:0,26,937 0/0:32,22:54:54.54:0,55,879 0/1:37,65:102:44.14:44,0,972 0/0:59,60:121:99:0,129,1579 0/1:56,54:110:73.69:74,0,1340 0/1:33,30:63:30.77:31,0,787 0/0:80,79:160:73.82:0,74,2277 0/0:56,45:101:62.53:0,63,1495 0/0:77,66:143:99:0,153,2397 0/0:54,42:96:99:0,109,1752 0/0:35,34:69:45.92:0,46,1011 0/1:36,50:87:91.73:92,0,947 0/1:26,30:56:29.02:29,0,596 0/1:26,38:64:13.13:13,0,777 0/0:28,39:67:20.85:0,21,689 0/0:69,42:111:99:0,174,1847 0/0:48,41:89:86.28:0,86,1243 0/1:32,33:65:60.82:61,0,838 0/1:29,47:76:99:103,0,844 0/0:43,46:91:32.78:0,33,1243 0/0:40,40:80:54.71:0,55,907 0/0:44,33:77:42.40:0,42,1040 0/0:26,33:59:14.01:0,14,711 0/0:44,35:79:48.13:0,48,1218 0/1:32,37:70:24.29:24,0,835 0/0:35,36:71:67.58:0,68,1026 16 48399303 . C A 275.10 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.501;DP=1563;Dels=0.00;FS=6.062;HRun=0;HaplotypeScore=0.6171;InbreedingCoeff=-0.0120;MQ=59.23;MQ0=0;MQRankSum=-2.125;QD=7.86;ReadPosRankSum=-1.979 GT:AD:DP:GQ:PL 0/0:28,0:28:81.26:0,81,1026 0/0:28,0:28:78.25:0,78,999 0/0:18,0:18:45.14:0,45,583 0/0:68,0:68:99:0,187,2502 0/0:51,0:51:99:0,141,1892 0/0:44,0:44:99:0,117,1566 0/0:42,0:42:99:0,111,1530 0/0:33,0:33:87.28:0,87,1171 0/0:33,0:33:99:0,99,1240 0/0:35,0:35:99:0,105,1316 0/0:30,0:30:81.26:0,81,1038 0/0:34,0:34:99:0,99,1251 0/0:29,0:29:75.24:0,75,960 0/0:36,0:36:99:0,99,1275 0/0:87,0:87:99:0,229,2910 0/0:26,0:26:72.21:0,72,913 0/0:41,0:41:99:0,117,1482 0/1:22,13:35:99:321,0,691 0/0:51,0:51:99:0,138,1744 0/0:47,0:47:99:0,132,1675 0/0:47,0:47:99:0,129,1650 0/0:37,0:37:99:0,99,1295 0/0:56,0:56:99:0,141,1940 0/0:33,0:33:93.31:0,93,1258 0/0:41,0:41:99:0,108,1475 0/0:35,0:35:93.31:0,93,1284 0/0:29,0:29:78.24:0,78,990 0/0:23,0:23:66.19:0,66,822 0/0:33,0:33:93.28:0,93,1170 0/0:31,0:31:84.26:0,84,1068 0/0:36,0:36:99:0,102,1300 0/0:45,0:45:99:0,114,1484 0/0:36,0:36:96.29:0,96,1221 0/0:32,0:32:87.28:0,87,1135 0/0:30,0:30:87.27:0,87,1082 0/0:41,0:41:99:0,117,1477 0/0:48,0:48:99:0,120,1533 0/0:26,0:26:75.24:0,75,959 0/0:26,0:26:75.24:0,75,950 0/0:37,0:38:99:0,108,1364 0/0:22,0:22:66.21:0,66,820 0/0:22,0:22:63.19:0,63,795 16 49314837 . T G 3987.97 . AC=5;AF=0.060;AN=84;BaseQRankSum=9.873;DP=3184;Dels=0.00;FS=8.942;HRun=1;HaplotypeScore=1.9911;InbreedingCoeff=0.3620;MQ=59.38;MQ0=0;MQRankSum=0.608;QD=19.84;ReadPosRankSum=-1.170 GT:AD:DP:GQ:PL 0/1:29,30:59:99:837,0,684 0/0:54,0:54:99:0,147,1755 0/0:40,0:40:99:0,108,1276 0/0:225,0:226:99:0,551,6677 0/0:165,0:165:99:0,409,4949 0/0:182,0:183:99:0,439,5454 0/0:141,0:142:99:0,337,4187 0/0:141,1:142:99:0,334,4127 0/0:43,0:43:99:0,117,1354 0/1:16,20:36:99:588,0,437 0/0:50,0:51:99:0,129,1548 0/0:42,0:42:99:0,123,1414 0/0:44,0:44:99:0,123,1415 0/0:56,1:57:99:0,156,1825 0/0:163,0:165:99:0,388,4692 0/0:44,0:44:99:0,111,1276 0/0:49,1:50:99:0,135,1580 0/0:38,0:38:99:0,102,1213 0/1:19,34:53:99:938,0,422 1/1:0,53:53:99:1626,126,0 0/0:58,1:59:99:0,153,1771 0/0:36,0:36:93.28:0,93,1129 0/0:220,4:224:99:0,513,6511 0/0:117,0:117:99:0,289,3586 0/0:159,0:159:99:0,388,4773 0/0:116,0:116:99:0,280,3438 0/0:35,0:35:99:0,99,1164 0/0:48,1:49:99:0,132,1559 0/0:36,0:36:87.26:0,87,1087 0/0:59,0:59:99:0,162,1869 0/0:37,0:37:96.29:0,96,1152 0/0:59,1:61:99:0,125,1700 0/0:48,0:48:99:0,132,1562 0/0:55,0:55:99:0,150,1786 0/0:55,0:56:99:0,129,1586 0/0:56,0:56:99:0,141,1708 0/0:69,0:69:99:0,156,1907 0/0:36,0:36:99:0,102,1189 0/0:39,0:39:99:0,111,1293 0/0:59,0:59:99:0,150,1792 0/0:40,0:40:99:0,108,1277 0/0:49,2:51:99:0,129,1483 16 49411724 . G A 262.70 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.820;DP=465;Dels=0.00;FS=1.231;HRun=0;HaplotypeScore=0.2871;InbreedingCoeff=-0.0302;MQ=58.84;MQ0=0;MQRankSum=-1.255;QD=11.94;ReadPosRankSum=0.875 GT:AD:DP:GQ:PL 0/0:8,0:8:21.05:0,21,253 0/0:9,0:9:27.08:0,27,325 0/0:9,0:9:27.08:0,27,324 0/0:14,0:14:39.12:0,39,509 0/0:4,0:4:12.04:0,12,159 0/0:9,0:9:21.07:0,21,280 0/0:5,0:5:12.04:0,12,155 0/0:6,0:6:18.05:0,18,216 0/0:10,0:10:27.07:0,27,305 0/0:6,0:6:18.04:0,18,199 0/0:9,0:9:27.08:0,27,324 0/0:10,0:10:27.07:0,27,321 0/0:6,0:6:15.04:0,15,168 0/0:2,0:2:6.02:0,6,67 0/0:44,0:45:99:0,123,1465 0/0:7,0:7:21.05:0,21,239 0/0:12,0:12:33.07:0,33,376 0/0:9,0:9:24.07:0,24,293 0/0:16,0:16:45.10:0,45,509 0/0:29,0:29:69.19:0,69,869 0/0:18,0:18:48.12:0,48,560 0/0:11,0:11:30.09:0,30,359 0/0:16,0:16:45.13:0,45,552 0/0:7,0:7:21.07:0,21,261 0/0:9,0:9:27.08:0,27,334 0/0:8,0:8:21.07:0,21,277 0/0:8,0:8:21.06:0,21,252 0/0:8,0:8:24.07:0,24,270 0/1:2,6:8:47.64:176,0,48 0/0:12,0:12:30.08:0,30,346 0/0:9,0:9:27.08:0,27,314 0/1:7,7:14:99:149,0,188 0/0:9,0:9:24.07:0,24,290 0/0:9,0:9:27.08:0,27,325 0/0:12,0:12:36.08:0,36,410 0/0:11,0:11:27.08:0,27,344 0/0:17,0:17:45.10:0,45,510 0/0:16,0:16:48.14:0,48,578 0/0:9,0:9:27.08:0,27,321 0/0:9,0:9:27.08:0,27,315 0/0:10,0:10:24.07:0,24,299 0/0:10,0:10:30.09:0,30,361 16 49430501 . C T 1098 . AC=2;AF=0.024;AN=84;BaseQRankSum=6.249;DP=2432;Dels=0.00;FS=4.988;HRun=0;HaplotypeScore=1.3044;InbreedingCoeff=-0.0244;MQ=59.06;MQ0=0;MQRankSum=-0.584;QD=13.23;ReadPosRankSum=-1.523 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,156,1746 0/0:51,0:51:99:0,135,1477 0/1:23,17:40:99:466,0,566 0/0:92,0:92:99:0,256,3074 0/0:61,0:61:99:0,180,2086 0/0:66,0:67:99:0,187,2254 0/0:60,0:60:99:0,168,1990 0/0:63,0:63:99:0,172,2057 0/0:46,0:46:99:0,120,1311 0/0:34,0:35:90.20:0,90,965 0/0:47,0:47:99:0,132,1410 0/0:62,0:63:99:0,171,1869 0/0:43,0:43:99:0,129,1391 0/1:19,24:43:99:695,0,485 0/0:165,0:166:99:0,433,4734 0/0:41,0:41:99:0,114,1221 0/0:49,0:49:99:0,138,1506 0/0:49,0:49:99:0,141,1515 0/0:75,0:75:99:0,207,2239 0/0:89,0:89:99:0,241,2657 0/0:76,0:76:99:0,211,2298 0/0:55,0:57:99:0,144,1602 0/0:76,0:76:99:0,214,2545 0/0:67,0:67:99:0,190,2268 0/0:62,0:62:99:0,174,2083 0/0:54,0:55:99:0,147,1793 0/0:37,0:37:96.25:0,96,1070 0/0:46,0:46:99:0,135,1431 0/0:43,0:44:99:0,123,1366 0/0:50,0:51:99:0,144,1551 0/0:36,0:36:99:0,99,1077 0/0:70,0:70:99:0,192,2097 0/0:54,0:54:99:0,153,1667 0/0:53,0:53:99:0,126,1374 0/0:48,0:48:99:0,126,1386 0/0:48,0:48:99:0,135,1467 0/0:67,0:68:99:0,192,2087 0/0:47,0:47:99:0,126,1380 0/0:46,0:46:99:0,120,1331 0/0:53,0:53:99:0,153,1666 0/0:49,0:50:99:0,138,1483 0/0:49,0:50:99:0,132,1448 16 49430534 . G A 249.61 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.510;DP=1937;Dels=0.00;FS=1.100;HRun=2;HaplotypeScore=1.0929;InbreedingCoeff=-0.0120;MQ=59.11;MQ0=0;MQRankSum=-0.096;QD=8.91;ReadPosRankSum=-0.632 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,162,1958 0/0:39,0:39:99:0,108,1290 0/0:28,0:28:81.21:0,81,960 0/0:76,0:76:99:0,226,2811 0/0:56,0:56:99:0,159,1976 0/0:47,0:47:99:0,132,1647 0/0:40,0:40:99:0,117,1500 0/0:49,0:49:99:0,147,1838 0/0:33,0:33:93.26:0,93,1124 0/0:25,0:25:75.21:0,75,877 0/0:44,0:44:99:0,126,1473 0/0:51,0:51:99:0,150,1808 0/0:35,0:35:99:0,105,1258 0/0:26,0:26:75.21:0,75,907 0/0:134,1:135:99:0,376,4504 0/0:34,0:34:99:0,99,1181 0/0:45,0:45:99:0,132,1596 0/0:43,0:43:99:0,126,1512 0/0:61,0:62:99:0,171,2061 0/0:58,0:59:99:0,162,1955 0/0:45,0:45:99:0,132,1611 0/0:46,0:46:99:0,129,1510 0/0:75,0:75:99:0,214,2636 0/0:52,0:52:99:0,153,1956 0/0:51,1:52:99:0,117,1884 0/0:42,0:42:99:0,126,1551 0/0:40,0:40:99:0,108,1277 0/0:38,0:38:99:0,105,1248 0/0:26,0:26:75.21:0,75,908 0/0:47,0:47:99:0,138,1615 0/1:17,11:28:99:296,0,454 0/0:50,0:50:99:0,138,1683 0/0:36,0:36:99:0,108,1287 0/0:42,0:42:99:0,108,1339 0/0:38,1:39:83.71:0,84,1275 0/0:34,0:34:99:0,102,1179 0/0:49,0:50:99:0,141,1669 0/0:40,0:40:99:0,117,1390 0/0:39,0:39:99:0,114,1327 0/0:47,0:47:99:0,132,1579 0/0:38,0:38:99:0,108,1287 0/0:45,0:45:99:0,132,1614 16 50106594 . T C 72489.94 . AC=59;AF=0.702;AN=84;BaseQRankSum=25.718;DP=3038;Dels=0.00;FS=29.705;HRun=2;HaplotypeScore=0.9870;InbreedingCoeff=0.0283;MQ=59.52;MQ0=0;MQRankSum=0.089;QD=25.71;ReadPosRankSum=0.097 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,108,1315 0/1:17,28:45:99:891,0,438 1/1:0,51:51:99:1709,132,0 1/1:0,179:179:99:6340,470,0 0/1:83,74:157:99:2218,0,2315 0/1:92,63:155:99:1845,0,2584 1/1:0,125:125:99:4464,331,0 0/1:68,60:128:99:1712,0,1892 1/1:0,69:69:99:2382,187,0 1/1:0,47:47:99:1638,129,0 0/1:42,27:69:99:790,0,1099 0/0:70,0:70:99:0,175,2152 0/1:26,12:38:99:284,0,805 0/1:24,21:45:99:638,0,721 1/1:0,165:165:99:5346,418,0 1/1:0,22:22:63.20:808,63,0 0/1:24,21:45:99:628,0,698 1/1:1,42:43:74.38:1363,74,0 0/1:28,28:56:99:805,0,728 0/0:52,0:52:99:0,135,1686 1/1:0,60:60:99:1911,153,0 0/1:23,18:41:99:538,0,675 1/1:0,163:163:99:5973,439,0 1/1:0,112:112:99:4139,307,0 0/1:71,85:156:99:2726,0,1835 1/1:1,123:124:99:4576,308,0 0/1:22,18:40:99:468,0,658 0/0:56,1:57:99:0,147,1843 1/1:0,50:50:99:1729,135,0 1/1:0,56:56:99:1831,141,0 0/1:12,15:27:99:422,0,357 1/1:0,55:55:99:1822,138,0 1/1:0,32:32:90.29:1151,90,0 0/1:24,14:38:99:397,0,746 0/1:21,24:45:99:690,0,616 1/1:0,62:62:99:2114,166,0 1/1:0,63:63:99:1980,156,0 1/1:0,50:50:99:1704,132,0 1/1:0,45:45:99:1587,126,0 0/1:37,30:68:99:880,0,1024 1/1:3,40:43:9.45:1277,9,0 0/1:27,23:50:99:715,0,713 16 50118125 . G A 710.78 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.557;DP=3120;DS;Dels=0.00;FS=12.983;HRun=0;HaplotypeScore=1.4236;InbreedingCoeff=-0.0120;MQ=59.40;MQ0=0;MQRankSum=-0.462;QD=12.05;ReadPosRankSum=0.124 GT:AD:DP:GQ:PL 0/0:66,0:66:99:0,178,2120 0/0:46,0:46:99:0,135,1616 0/0:48,0:48:99:0,135,1558 0/0:116,0:116:99:0,307,3962 0/0:131,0:131:99:0,370,4716 0/0:111,0:111:99:0,307,3984 0/0:89,0:89:99:0,244,3184 0/0:97,0:97:99:0,259,3271 0/0:66,0:66:99:0,184,2140 0/0:61,0:61:99:0,174,2034 0/0:50,0:50:99:0,141,1644 0/0:62,0:62:99:0,175,2121 0/0:56,1:57:99:0,162,1882 0/0:69,0:70:99:0,190,2255 0/0:185,0:185:99:0,511,6099 0/0:56,0:56:99:0,165,1955 0/0:67,0:68:99:0,187,2235 0/0:64,0:64:99:0,184,2167 0/0:83,0:83:99:0,235,2749 0/0:100,0:100:99:0,268,3257 0/0:72,0:73:99:0,193,2295 0/0:53,0:53:99:0,147,1752 0/0:111,0:111:99:0,316,4057 0/0:89,0:89:99:0,256,3261 0/0:104,2:106:99:0,264,3799 0/0:86,0:86:99:0,226,2914 0/0:47,0:47:99:0,123,1468 0/0:62,0:62:99:0,175,2069 0/0:48,0:48:99:0,138,1663 0/0:59,0:59:99:0,168,1970 0/0:56,0:56:99:0,156,1871 0/0:71,0:71:99:0,193,2322 0/1:33,26:59:99:757,0,884 0/0:47,0:47:99:0,138,1628 0/0:68,0:68:99:0,184,2202 0/0:64,0:64:99:0,186,2181 0/0:78,0:79:99:0,214,2510 0/0:67,0:68:99:0,196,2250 0/0:60,0:60:99:0,165,1998 0/0:52,0:52:99:0,153,1792 0/0:68,0:68:99:0,196,2352 0/0:65,0:65:99:0,184,2177 16 50136247 . C T 6725.02 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.018;DP=4997;DS;Dels=0.00;FS=5.367;HRun=3;HaplotypeScore=4.1012;InbreedingCoeff=-0.0244;MQ=59.37;MQ0=0;MQRankSum=0.822;QD=16.05;ReadPosRankSum=0.898 GT:AD:DP:GQ:PL 0/0:78,0:78:99:0,226,2776 0/0:85,0:85:99:0,226,2794 0/0:73,0:73:99:0,205,2536 0/0:201,0:201:99:0,560,7065 0/0:181,0:181:99:0,481,6191 0/1:118,108:227:99:3297,0,3592 0/1:81,110:192:99:3428,0,2318 0/0:195,0:196:99:0,542,7039 0/0:89,0:89:99:0,238,2980 0/0:96,0:96:99:0,256,3168 0/0:101,1:102:99:0,283,3519 0/0:77,0:77:99:0,211,2547 0/0:86,0:86:99:0,244,3008 0/0:69,0:69:99:0,199,2436 0/0:235,2:238:99:0,626,7563 0/0:70,1:71:99:0,211,2545 0/0:109,0:109:99:0,289,3603 0/0:90,0:91:99:0,253,3067 0/0:98,0:99:99:0,286,3532 0/0:135,0:135:99:0,334,4179 0/0:102,0:102:99:0,271,3339 0/0:86,0:87:99:0,247,3044 0/0:221,0:221:99:0,596,7546 0/0:217,0:217:99:0,599,7739 0/0:203,0:203:99:0,569,7291 0/0:215,0:215:99:0,584,7607 0/0:71,0:71:99:0,181,2270 0/0:101,0:101:99:0,280,3414 0/0:72,0:72:99:0,202,2495 0/0:85,0:86:99:0,244,2998 0/0:91,0:91:99:0,253,3166 0/0:152,1:153:99:0,415,5141 0/0:85,1:87:99:0,232,2833 0/0:74,0:74:99:0,211,2582 0/0:81,0:81:99:0,226,2777 0/0:86,0:86:99:0,238,2921 0/0:82,3:85:99:0,191,2732 0/0:92,0:93:99:0,250,2991 0/0:101,0:101:99:0,286,3534 0/0:106,1:107:99:0,286,3536 0/0:84,0:84:99:0,235,2807 0/0:84,0:85:99:0,238,2906 16 50136272 . G A 41.72 . AC=1;AF=0.012;AN=84;BaseQRankSum=-22.417;DP=5085;DS;Dels=0.00;FS=235.423;HRun=3;HaplotypeScore=2.8448;InbreedingCoeff=-0.0121;MQ=59.26;MQ0=0;MQRankSum=-1.811;QD=0.41;ReadPosRankSum=-12.676 GT:AD:DP:GQ:PL 0/0:75,9:84:99:0,121,2086 0/0:73,5:78:99:0,156,2039 0/0:71,9:80:90.45:0,90,1802 0/0:224,14:238:99:0,475,6818 0/0:172,13:186:99:0,316,5328 0/0:212,12:224:99:0,464,6793 0/0:180,17:197:99:0,340,5478 0/0:200,6:206:99:0,480,6251 0/0:85,10:95:99:0,161,2336 0/0:86,6:92:99:0,193,2317 0/0:91,11:102:99:0,212,2646 0/0:86,2:88:99:0,220,2584 0/0:76,6:82:99:0,107,2051 0/0:73,6:80:99:0,155,1952 0/0:215,35:250:99:0,170,5830 0/0:57,6:63:99:0,100,1560 0/0:90,10:100:99:0,140,2648 0/0:86,12:98:99:0,178,2447 0/0:88,21:109:29.63:0,30,2411 0/0:139,1:140:99:0,352,4215 0/0:110,32:143:84.69:0,85,2803 0/0:75,4:79:99:0,161,2161 0/0:229,15:245:99:0,529,7261 0/0:193,7:200:99:0,462,6283 0/0:189,14:204:99:0,367,5812 0/0:179,15:195:99:0,422,5847 0/0:59,5:64:98.01:0,98,1607 0/0:93,13:106:99:0,140,2521 0/0:64,6:70:98.59:0,99,1875 0/0:84,8:93:99:0,165,2445 0/0:79,11:90:99:0,122,2395 0/0:123,6:130:99:0,316,3689 0/0:83,5:88:99:0,159,2342 0/0:69,12:82:99:0,130,2005 0/0:66,5:71:99:0,128,1746 0/0:80,13:93:99:0,167,2335 0/1:77,25:103:87.93:88,0,1977 0/0:73,9:82:99:0,124,1980 0/0:74,8:82:99:0,126,2258 0/0:92,14:106:99:0,189,2612 0/0:72,8:80:99:0,183,2130 0/0:76,7:83:99:0,153,2141 16 50136331 . G A 2061.98 . 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A G 84436.21 . 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G A 15550.72 . 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G C 4940.02 . 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C T 23857.47 . 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C T 1057.82 . 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G A 11236.21 . 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G A 1494.50 . 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T C 108770.12 . 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C T 2651.70 . 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G A 15555.77 . 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C T 434.93 . 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C T 435.21 . 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C T 355.17 . 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A G 42212.93 . 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G C 5.55 . 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C T 9451.09 . 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C T 33956.99 . 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C G 7026.36 . 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T G 41.68 . 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T C 25479.15 . 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C T 102164.09 . 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G A 20646.69 . 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C A 148180.35 . 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C T 1292.31 . 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C T 6378.43 . AC=16;AF=0.190;AN=84;BaseQRankSum=-4.679;DP=1465;Dels=0.00;FS=10.187;HRun=0;HaplotypeScore=2.6294;InbreedingCoeff=-0.0809;MQ=58.89;MQ0=1;MQRankSum=0.210;QD=13.66;ReadPosRankSum=2.172 GT:AD:DP:GQ:PL 0/0:33,0:33:84.25:0,84,1036 0/0:30,0:30:78.23:0,78,937 0/0:23,0:23:63.18:0,63,762 0/0:65,0:65:99:0,169,2112 0/0:73,0:73:99:0,190,2385 0/1:15,20:35:99:561,0,377 0/0:34,0:34:81.24:0,81,1044 0/1:31,19:50:99:434,0,832 0/1:10,16:26:99:472,0,233 0/1:16,12:28:99:241,0,444 0/0:17,0:17:42.10:0,42,501 0/0:23,0:23:66.17:0,66,774 0/0:16,0:16:39.11:0,39,474 0/0:22,0:22:60.17:0,60,732 0/0:88,0:88:99:0,211,2583 0/0:25,0:25:60.18:0,60,758 0/0:23,0:23:60.18:0,60,743 0/0:27,0:27:72.21:0,72,876 0/0:43,0:43:99:0,108,1288 0/0:72,0:72:99:0,187,2352 1/1:1,41:43:90.28:1097,90,0 0/1:12,16:28:99:433,0,312 0/0:68,0:69:99:0,184,2290 0/0:43,0:44:99:0,105,1323 0/0:41,0:41:99:0,108,1351 0/0:48,0:48:99:0,123,1542 0/1:12,9:21:99:238,0,332 0/0:25,0:25:69.21:0,69,845 0/1:11,9:20:99:189,0,339 0/1:14,8:22:99:162,0,394 0/1:11,8:19:99:189,0,343 0/1:28,30:58:99:853,0,689 0/0:42,0:42:99:0,114,1398 0/1:12,14:26:99:431,0,288 0/1:18,3:21:54.99:55,0,476 0/0:26,0:26:66.17:0,66,781 0/0:33,0:33:93.28:0,93,1136 0/0:21,0:21:60.15:0,60,722 0/0:17,0:17:48.14:0,48,585 0/1:19,17:36:99:394,0,523 0/0:18,0:18:54.13:0,54,632 0/1:12,22:34:99:631,0,300 16 56919235 . G A 273 . 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C T 6421.99 . 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C T 6264.20 . 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C T 2738.53 . 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C A 4248.32 . AC=37;AF=0.440;AN=84;BaseQRankSum=-9.415;DP=393;Dels=0.00;FS=6.187;HRun=0;HaplotypeScore=1.4642;InbreedingCoeff=-0.2203;MQ=59.30;MQ0=0;MQRankSum=0.723;QD=14.75;ReadPosRankSum=0.892 GT:AD:DP:GQ:PL 0/1:4,5:9:97.85:159,0,98 0/0:10,0:10:24.08:0,24,317 0/0:3,0:3:9.02:0,9,101 0/0:10,0:10:27.09:0,27,361 0/1:6,6:12:99:148,0,175 0/1:3,3:6:46.98:89,0,47 0/1:6,5:11:99:158,0,144 1/1:0,13:13:33.09:385,33,0 0/1:4,5:9:99:117,0,100 0/1:5,2:7:46.72:47,0,139 0/0:3,0:3:9.03:0,9,106 0/1:8,1:9:14.52:15,0,227 0/0:5,0:5:12.04:0,12,161 0/1:4,1:5:21.08:21,0,141 0/1:16,12:28:99:328,0,443 0/0:6,0:6:18.01:0,18,187 0/1:4,4:8:99:103,0,131 0/1:3,3:6:24.09:24,0,100 1/1:2,9:11:27.08:324,27,0 0/1:12,7:19:99:173,0,318 0/0:23,0:23:60.17:0,60,735 0/0:13,0:13:30.10:0,30,394 0/1:9,4:13:75.59:76,0,252 0/1:3,5:8:60.70:154,0,61 0/0:14,0:14:30.10:0,30,419 0/1:5,4:9:56.35:56,0,125 1/1:0,4:4:12.04:143,12,0 0/1:4,2:6:54.52:55,0,101 0/0:8,0:8:24.07:0,24,295 0/1:5,1:6:17.19:17,0,179 0/1:1,6:7:8.65:140,0,9 0/1:8,11:19:99:300,0,195 0/1:3,5:8:88.36:143,0,88 0/1:1,7:8:13.29:187,0,13 1/1:0,6:6:15.04:172,15,0 0/0:10,0:10:27.08:0,27,341 0/1:8,5:13:99:115,0,243 1/1:0,6:6:18.04:199,18,0 0/1:3,3:6:85.50:85,0,92 0/1:4,2:6:45.90:46,0,106 1/1:0,3:3:9.03:105,9,0 0/1:1,6:7:21.26:165,0,21 16 56996288 . G A 15639.48 . AC=35;AF=0.417;AN=84;BaseQRankSum=0.114;DP=1314;Dels=0.00;FS=0.628;HRun=1;HaplotypeScore=2.0275;InbreedingCoeff=-0.2295;MQ=59.20;MQ0=0;MQRankSum=-0.528;QD=16.85;ReadPosRankSum=1.493 GT:AD:DP:GQ:PL 0/1:13,14:27:99:380,0,347 0/0:22,0:22:51.16:0,51,654 0/0:31,0:31:87.22:0,87,1016 0/0:49,0:49:99:0,129,1680 0/0:46,0:46:99:0,123,1588 0/1:24,25:49:99:648,0,647 0/1:16,8:24:99:236,0,419 1/1:0,34:34:84.27:1086,84,0 0/1:16,15:31:99:408,0,431 0/1:11,9:20:99:224,0,243 0/1:14,14:28:99:357,0,356 0/1:10,10:20:99:250,0,246 0/0:18,0:18:51.14:0,51,603 0/1:6,12:18:99:363,0,136 0/1:36,47:83:99:1188,0,829 0/0:37,0:37:90.25:0,90,1107 0/1:3,10:13:71.27:329,0,71 0/1:17,9:26:99:232,0,479 1/1:0,46:46:99:1356,108,0 0/1:26,18:44:99:485,0,686 0/0:43,0:43:99:0,105,1271 0/0:26,0:26:75.21:0,75,878 0/1:22,28:50:99:772,0,681 0/1:6,18:24:99:519,0,142 0/0:39,0:39:90.25:0,90,1155 0/1:18,8:26:99:203,0,509 0/1:10,7:17:99:192,0,305 0/1:19,13:32:99:357,0,532 0/0:29,0:29:72.22:0,72,892 0/1:9,17:26:99:428,0,239 0/0:17,0:17:48.15:0,48,588 0/1:22,22:44:99:577,0,632 0/1:15,14:29:99:383,0,367 0/1:11,18:29:99:531,0,248 1/1:1,16:17:14.72:533,15,0 0/0:29,0:29:78.24:0,78,965 0/1:29,19:48:99:530,0,768 1/1:0,33:33:90.28:1117,90,0 0/1:6,12:18:99:352,0,163 0/1:11,17:28:99:500,0,279 1/1:2,18:20:12.55:605,13,0 0/1:8,16:24:99:501,0,180 16 57016092 . G A 52314.18 . AC=54;AF=0.643;AN=84;BaseQRankSum=11.324;DP=2725;Dels=0.00;FS=5.956;HRun=0;HaplotypeScore=1.6891;InbreedingCoeff=-0.1407;MQ=59.21;MQ0=0;MQRankSum=0.691;QD=20.93;ReadPosRankSum=0.041 GT:AD:DP:GQ:PL 0/1:21,31:53:99:817,0,548 0/1:27,34:61:99:946,0,683 0/0:46,0:46:99:0,120,1396 1/1:0,114:114:99:3454,280,0 0/1:62,51:113:99:1337,0,1743 1/1:1,78:80:99:2575,177,0 0/1:35,31:66:99:824,0,913 0/1:48,37:85:99:940,0,1375 0/1:34,29:63:99:780,0,873 1/1:0,54:54:99:1737,150,0 0/1:22,26:48:99:681,0,582 1/1:0,51:51:99:1601,135,0 1/1:0,43:43:99:1318,111,0 1/1:0,53:53:99:1764,150,0 0/1:87,100:187:99:2541,0,2159 0/1:23,13:36:99:335,0,610 1/1:0,53:53:99:1765,150,0 0/0:43,1:44:91.78:0,92,1340 0/0:75,0:75:99:0,189,2166 0/1:46,42:88:99:1024,0,1114 0/1:38,39:77:99:1096,0,911 0/1:35,25:60:99:647,0,904 1/1:0,120:120:99:3843,316,0 0/1:34,37:71:99:1003,0,877 1/1:1,80:81:99:2378,158,0 0/1:25,32:57:99:891,0,643 1/1:0,36:36:96.28:1146,96,0 1/1:0,65:65:99:2129,181,0 1/1:0,45:45:99:1510,126,0 0/1:31,30:61:99:827,0,824 1/1:0,50:50:99:1656,135,0 1/1:0,81:81:99:2664,223,0 0/1:36,21:57:99:505,0,932 0/1:25,23:49:99:558,0,676 0/1:24,28:52:99:744,0,584 1/1:0,54:54:99:1770,147,0 1/1:0,73:75:99:2317,193,0 0/1:25,23:48:99:636,0,624 0/1:19,13:32:99:376,0,502 0/1:22,26:48:99:699,0,550 0/1:16,17:33:99:482,0,381 0/0:58,2:60:99:0,100,1593 16 57075406 . T C 6034.69 . AC=10;AF=0.119;AN=84;BaseQRankSum=10.944;DP=1945;Dels=0.00;FS=1.969;HRun=0;HaplotypeScore=1.2065;InbreedingCoeff=-0.1351;MQ=59.28;MQ0=0;MQRankSum=0.865;QD=13.72;ReadPosRankSum=0.489 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,105,1280 0/0:62,0:62:99:0,165,2000 0/0:28,0:29:84.25:0,84,988 0/0:79,0:79:99:0,205,2492 0/0:60,0:60:99:0,172,2114 0/0:54,0:54:99:0,141,1753 0/0:39,0:39:99:0,99,1245 0/0:38,0:38:99:0,108,1308 0/0:50,0:50:99:0,135,1624 0/0:39,0:39:99:0,102,1242 0/0:40,0:40:99:0,111,1334 0/0:49,0:49:99:0,138,1681 0/0:27,0:27:75.22:0,75,898 0/0:38,0:38:99:0,111,1315 0/0:127,0:127:99:0,328,3994 0/0:36,0:36:99:0,105,1245 0/1:31,18:49:99:477,0,868 0/0:44,0:44:99:0,108,1344 0/0:51,0:51:99:0,138,1642 0/0:60,0:60:99:0,144,1828 0/1:35,35:70:99:965,0,967 0/0:34,0:34:90.25:0,90,1061 0/0:68,0:68:99:0,184,2231 0/1:17,10:27:99:229,0,531 0/0:39,0:39:99:0,111,1341 0/1:19,21:40:99:709,0,486 0/0:38,0:38:99:0,108,1284 0/0:41,0:41:99:0,111,1352 0/0:39,0:39:99:0,108,1325 0/0:41,0:41:99:0,111,1360 0/0:46,0:47:99:0,117,1450 0/1:28,41:69:99:1237,0,752 0/0:51,0:51:99:0,123,1549 0/0:29,0:29:81.22:0,81,944 0/0:31,0:31:87.26:0,87,1060 0/1:27,16:43:99:459,0,810 0/0:49,0:49:99:0,132,1616 0/1:21,20:41:99:540,0,585 0/1:19,22:41:99:643,0,545 0/1:18,17:36:99:469,0,537 0/0:34,0:34:99:0,102,1210 0/1:13,11:24:99:305,0,347 16 57080528 . C A 12865.76 . AC=13;AF=0.155;AN=84;BaseQRankSum=-21.303;DP=2502;DS;Dels=0.00;FS=1.269;HRun=1;HaplotypeScore=1.7647;InbreedingCoeff=-0.0011;MQ=59.35;MQ0=0;MQRankSum=1.658;QD=15.98;ReadPosRankSum=0.137 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,144,1854 0/1:22,22:44:99:596,0,671 0/1:23,27:50:99:756,0,652 0/1:60,57:117:99:1429,0,1871 0/1:42,53:95:99:1424,0,1227 0/0:76,0:76:99:0,211,2792 0/0:39,0:39:99:0,105,1409 0/0:59,0:59:99:0,160,2124 0/0:49,0:50:99:0,135,1728 0/0:38,0:38:99:0,108,1330 0/0:55,1:56:99:0,163,2026 0/0:42,0:43:99:0,117,1459 0/1:15,19:34:99:571,0,427 0/0:46,0:46:99:0,126,1587 0/0:166,0:166:99:0,430,5474 0/0:41,0:41:99:0,108,1359 0/0:38,0:38:99:0,105,1306 0/0:43,0:43:99:0,105,1359 0/0:83,0:83:99:0,226,2854 0/0:99,0:99:99:0,268,3369 0/1:36,41:77:99:1102,0,981 0/1:29,24:54:99:685,0,834 1/1:0,107:107:99:3583,298,0 0/0:77,0:77:99:0,196,2673 0/1:38,33:71:99:845,0,1059 0/0:57,0:57:99:0,153,2020 0/0:34,0:34:93.29:0,93,1176 0/0:51,0:51:99:0,144,1827 0/0:39,0:39:99:0,105,1321 0/0:49,0:49:99:0,138,1672 0/0:30,1:31:62.70:0,63,1101 0/0:88,0:88:99:0,238,3009 0/0:62,0:63:99:0,178,2202 0/0:46,0:46:99:0,132,1657 0/0:39,0:39:99:0,114,1408 0/0:52,0:52:99:0,138,1754 0/1:41,24:65:99:638,0,1168 0/1:27,25:52:99:629,0,809 0/0:46,0:46:99:0,129,1614 0/0:53,2:55:99:0,110,1767 0/1:17,22:39:99:609,0,485 0/0:37,0:37:99:0,105,1330 16 57091977 . T C 2579.18 . AC=13;AF=0.155;AN=84;BaseQRankSum=11.863;DP=767;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.4642;InbreedingCoeff=-0.0024;MQ=59.03;MQ0=0;MQRankSum=0.952;QD=11.41;ReadPosRankSum=-0.118 GT:AD:DP:GQ:PL 0/0:24,0:24:60.17:0,60,735 0/0:14,0:14:36.11:0,36,451 0/1:9,1:10:14.50:15,0,229 0/0:30,0:30:66.21:0,66,837 0/0:34,0:34:87.27:0,87,1085 0/0:18,0:18:45.14:0,45,570 0/0:16,0:16:42.12:0,42,515 0/0:4,0:4:12.02:0,12,131 0/0:15,0:15:42.12:0,42,493 0/0:10,0:10:30.08:0,30,338 0/0:14,0:14:36.11:0,36,436 0/0:13,0:13:36.11:0,36,430 0/0:12,0:12:33.10:0,33,398 0/0:16,0:16:45.13:0,45,533 0/0:55,0:55:99:0,132,1618 0/0:18,0:18:45.14:0,45,562 0/1:9,9:18:99:224,0,229 0/0:18,0:18:48.15:0,48,585 0/0:19,0:19:45.14:0,45,574 0/0:18,0:18:42.13:0,42,533 0/1:22,15:38:99:347,0,584 0/0:11,0:11:27.08:0,27,323 0/0:16,0:16:45.14:0,45,550 1/1:0,17:17:39.12:526,39,0 0/1:10,14:24:99:432,0,218 0/1:7,7:14:99:177,0,206 0/0:15,0:15:39.12:0,39,488 0/0:30,0:30:84.23:0,84,980 0/0:14,0:14:36.10:0,36,433 0/0:15,0:15:36.11:0,36,447 0/0:14,0:14:39.12:0,39,470 0/1:22,10:34:99:244,0,561 0/0:23,0:23:60.16:0,60,715 0/0:16,0:16:45.14:0,45,547 0/0:7,0:7:18.06:0,18,224 0/1:2,4:6:55.05:139,0,55 0/0:19,0:20:54.15:0,54,620 0/1:12,7:19:99:174,0,343 0/1:9,11:20:99:296,0,254 0/1:8,3:11:49.21:49,0,216 0/0:12,0:12:36.10:0,36,415 0/1:11,4:15:99:112,0,309 16 57091999 . G A 640.67 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.725;DP=854;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.6101;InbreedingCoeff=-0.0294;MQ=58.88;MQ0=0;MQRankSum=-0.543;QD=11.05;ReadPosRankSum=0.169 GT:AD:DP:GQ:PL 0/0:28,0:28:69.20:0,69,836 0/0:11,0:11:30.08:0,30,349 0/0:12,0:12:30.08:0,30,364 0/0:31,0:31:69.22:0,69,907 0/0:38,0:38:87.27:0,87,1124 0/0:19,0:19:48.12:0,48,604 0/0:18,0:18:51.13:0,51,601 0/0:7,0:7:21.06:0,21,261 0/0:21,0:21:54.15:0,54,636 0/0:15,0:15:39.11:0,39,452 0/0:15,0:15:42.11:0,42,487 0/0:16,0:16:39.11:0,39,475 0/0:13,0:13:36.09:0,36,405 0/0:16,0:16:39.11:0,39,458 0/0:57,0:57:99:0,135,1685 0/0:18,0:18:48.15:0,48,594 0/0:18,0:18:45.13:0,45,557 0/0:19,0:19:48.13:0,48,567 0/0:25,0:25:66.18:0,66,771 0/0:20,0:20:51.14:0,51,607 0/0:36,0:36:78.23:0,78,986 0/0:12,1:13:2.11:0,2,353 0/0:22,0:22:54.17:0,54,693 0/0:17,0:18:36.12:0,36,497 0/0:23,0:24:48.16:0,48,658 0/0:18,0:18:39.12:0,39,511 0/0:16,0:16:45.10:0,45,517 0/1:23,11:35:99:280,0,627 0/0:18,0:18:42.12:0,42,507 0/0:18,0:18:45.13:0,45,538 0/0:15,0:15:42.11:0,42,484 0/0:35,0:35:81.24:0,81,1026 0/0:22,0:22:54.14:0,54,634 0/0:18,0:18:48.14:0,48,572 0/0:9,0:9:27.07:0,27,301 0/0:10,0:10:24.07:0,24,296 0/0:25,0:25:60.16:0,60,719 0/0:19,0:19:51.13:0,51,579 0/0:20,0:20:48.14:0,48,589 0/0:12,0:12:27.08:0,27,316 0/0:11,0:11:27.07:0,27,316 0/1:8,15:23:99:423,0,207 16 57181564 . C T 318.06 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.075;DP=1353;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9771;InbreedingCoeff=-0.0120;MQ=59.09;MQ0=0;MQRankSum=1.799;QD=13.83;ReadPosRankSum=-1.190 GT:AD:DP:GQ:PL 0/0:19,0:19:54.12:0,54,597 0/0:23,0:23:54.13:0,54,635 0/0:19,0:19:54.14:0,54,599 0/0:65,0:65:99:0,187,2159 0/0:57,1:58:99:0,165,1955 0/0:51,0:51:99:0,141,1636 0/0:26,0:26:78.22:0,78,910 0/0:37,0:37:99:0,108,1284 0/0:17,0:17:48.10:0,48,509 0/0:20,0:20:57.14:0,57,607 0/0:23,0:23:60.15:0,60,652 0/0:21,0:21:60.13:0,60,639 0/0:20,0:20:57.11:0,57,609 0/0:20,0:20:57.10:0,57,622 0/0:96,0:96:99:0,253,2803 0/0:23,0:23:66.15:0,66,724 0/0:25,0:25:66.17:0,66,748 0/0:16,0:16:45.12:0,45,503 0/0:50,0:50:99:0,141,1558 0/0:61,0:61:99:0,168,1878 0/0:35,0:35:84.15:0,84,888 0/0:26,0:26:75.17:0,75,794 0/0:55,0:55:99:0,156,1852 0/0:43,0:43:99:0,111,1324 0/0:28,0:28:78.23:0,78,929 0/0:40,0:40:99:0,114,1346 0/0:21,0:21:63.16:0,63,697 0/0:31,0:31:75.21:0,75,865 0/0:20,0:20:48.12:0,48,539 0/0:26,0:26:75.15:0,75,791 0/1:9,14:23:99:364,0,234 0/0:41,0:42:99:0,111,1218 0/0:28,0:28:78.18:0,78,842 0/0:31,0:31:87.22:0,87,958 0/0:25,0:25:75.21:0,75,846 0/0:26,0:26:75.18:0,75,819 0/0:50,0:50:99:0,135,1467 0/0:28,0:28:72.18:0,72,799 0/0:28,0:28:81.21:0,81,903 0/0:21,0:21:60.14:0,60,653 0/0:17,0:17:51.12:0,51,536 0/0:19,0:19:48.12:0,48,547 16 57295893 . G A 1956.49 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.552;DP=2864;DS;Dels=0.00;FS=1.480;HRun=2;HaplotypeScore=1.4846;InbreedingCoeff=-0.0244;MQ=58.99;MQ0=1;MQRankSum=-0.340;QD=15.41;ReadPosRankSum=-1.074 GT:AD:DP:GQ:PL 0/0:68,0:68:99:0,168,2096 0/0:65,1:67:99:0,171,2117 0/0:58,1:59:99:0,147,1791 0/0:111,0:111:99:0,307,3979 0/0:94,0:94:99:0,259,3386 0/0:99,0:99:99:0,274,3554 0/0:60,0:60:99:0,169,2206 0/0:67,0:67:99:0,184,2411 0/0:47,1:48:99:0,126,1530 0/0:56,0:56:99:0,159,1998 0/0:58,0:58:99:0,153,1944 0/0:66,0:66:99:0,181,2219 0/0:39,0:39:99:0,108,1316 0/0:49,0:49:99:0,129,1585 0/0:177,3:180:99:0,416,5739 0/0:45,0:45:99:0,120,1460 0/0:58,0:58:99:0,162,1973 0/0:58,0:58:99:0,162,2018 0/0:90,0:90:99:0,238,2850 0/0:112,0:112:99:0,313,3894 0/0:79,0:79:99:0,211,2592 0/0:64,0:64:99:0,172,2154 0/0:110,0:110:99:0,313,4084 0/1:30,30:60:99:834,0,970 0/0:65,1:66:99:0,166,2177 0/1:28,39:67:99:1185,0,951 0/0:47,0:47:99:0,135,1659 0/0:51,0:51:99:0,144,1805 0/0:48,0:48:99:0,129,1614 0/0:60,0:60:99:0,159,1973 0/0:54,0:55:99:0,147,1821 0/0:85,0:86:99:0,229,2854 0/0:66,0:66:99:0,184,2235 0/0:38,0:38:99:0,108,1345 0/0:44,0:44:99:0,123,1498 0/0:54,0:54:99:0,153,1858 0/0:96,0:96:99:0,265,3223 0/0:61,0:62:99:0,175,2145 0/0:66,0:66:99:0,165,2038 0/0:48,0:48:99:0,129,1590 0/0:49,1:50:99:0,129,1627 0/0:62,1:63:99:0,175,2188 16 57295912 . A C 549.81 . AC=11;AF=0.131;AN=84;BaseQRankSum=-27.113;DP=3087;DS;Dels=0.00;FS=957.365;HRun=3;HaplotypeScore=2.1103;InbreedingCoeff=-0.1652;MQ=58.91;MQ0=1;MQRankSum=-1.296;QD=0.67;ReadPosRankSum=-14.483 GT:AD:DP:GQ:PL 0/0:45,24:69:55.86:0,56,1330 0/0:46,34:80:44.11:0,44,1246 0/0:32,31:63:17.26:0,17,930 0/0:82,52:134:99:0,103,2576 0/0:65,37:102:99:0,101,2142 0/0:76,28:104:99:0,158,2548 0/0:43,19:62:99:0,122,1473 0/0:52,35:87:15.04:0,15,1533 0/1:27,25:52:16.55:17,0,718 0/0:38,20:58:48.44:0,48,1190 0/0:33,27:60:1.40:4,0,1059 0/0:46,21:68:97.77:0,98,1431 0/1:22,21:43:79.60:80,0,646 0/1:33,20:54:39.16:39,0,963 0/1:109,85:194:98.20:98,0,3162 0/0:33,18:51:22.24:0,22,996 0/0:33,32:65:19.35:0,19,1035 0/0:29,29:59:25.53:0,26,845 0/1:46,44:90:39.15:39,0,1207 0/0:69,39:108:99:0,132,2089 0/1:40,35:75:99:203,0,1115 0/0:42,28:70:51.45:0,51,1323 0/0:68,43:112:99:0,116,2111 0/0:43,22:65:99:0,101,1482 0/0:40,27:67:86.89:0,87,1273 0/0:50,25:75:45.99:0,46,1630 0/1:35,16:52:15.74:16,0,962 0/0:35,22:57:46.93:0,47,1064 0/0:33,20:53:26.18:0,26,880 0/0:43,27:71:53.07:0,53,1224 0/0:41,26:67:6.74:0,7,1200 0/0:56,30:86:99:0,136,1780 0/0:53,25:78:91.16:0,91,1433 0/1:19,18:37:22.35:22,0,564 0/0:36,16:53:96.24:0,96,1130 0/1:37,29:66:30.45:30,0,1116 0/1:48,44:92:99:129,0,1353 0/1:35,33:68:12.15:12,0,913 0/0:43,21:64:83.64:0,84,1272 0/0:38,21:59:22.47:0,22,1084 0/0:28,21:49:13.25:0,13,865 0/0:46,22:68:38.16:0,38,1443 16 57392733 . A C 175875.23 . AC=84;AF=1.000;AN=84;BaseQRankSum=3.760;DP=5299;DS;Dels=0.00;FS=6.773;HRun=0;HaplotypeScore=3.5007;InbreedingCoeff=0.0000;MQ=59.04;MQ0=0;MQRankSum=0.280;QD=33.19;ReadPosRankSum=-1.271 GT:AD:DP:GQ:PL 1/1:0,94:94:99:3169,253,0 1/1:0,105:106:99:3495,277,0 1/1:0,89:89:99:3019,241,0 1/1:1,223:224:99:7558,560,0 1/1:0,184:184:99:6434,476,0 1/1:0,147:147:99:5235,388,0 1/1:0,135:135:99:4695,349,0 1/1:1,141:142:99:4801,358,0 1/1:0,112:112:99:3711,292,0 1/1:0,97:97:99:3057,241,0 1/1:0,99:99:99:3392,268,0 1/1:1,100:101:99:3166,220,0 1/1:0,81:81:99:2584,205,0 1/1:0,83:83:99:2713,220,0 1/1:3,239:242:99:8108,620,0 1/1:0,86:86:99:3021,241,0 1/1:0,115:115:99:3998,319,0 1/1:0,73:73:99:2411,190,0 1/1:1,183:185:99:5773,454,0 1/1:0,185:185:99:6092,478,0 1/1:2,143:146:99:4510,355,0 1/1:0,125:125:99:3931,316,0 1/1:0,246:246:99:8138,599,0 1/1:0,119:120:99:4087,304,0 1/1:0,182:182:99:5996,445,0 1/1:0,133:134:99:4378,328,0 1/1:0,96:96:99:3201,250,0 1/1:0,104:104:99:3479,277,0 1/1:0,76:76:99:2568,202,0 1/1:0,88:89:99:3065,247,0 1/1:0,99:99:99:3307,262,0 1/1:1,169:171:99:5530,430,0 1/1:0,133:133:99:4307,337,0 1/1:0,99:99:99:3400,265,0 1/1:0,78:78:99:2607,208,0 1/1:0,103:103:99:3291,256,0 1/1:1,170:171:99:5282,421,0 1/1:0,119:119:99:3977,313,0 1/1:1,109:110:99:3541,283,0 1/1:1,102:103:99:3538,283,0 1/1:0,92:92:99:3129,247,0 1/1:0,122:122:99:4178,328,0 16 57499902 . T C 141328.61 . AC=69;AF=0.821;AN=84;BaseQRankSum=29.961;DP=5548;DS;Dels=0.00;FS=0.483;HRun=1;HaplotypeScore=1.9338;InbreedingCoeff=-0.2174;MQ=59.44;MQ0=0;MQRankSum=-0.050;QD=25.47;ReadPosRankSum=0.238 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2954,232,0 1/1:0,108:108:99:3500,274,0 1/1:1,90:91:99:3086,212,0 1/1:2,247:249:99:8421,578,0 0/1:125,113:238:99:3136,0,3492 1/1:2,243:245:99:8368,584,0 1/1:0,209:209:99:7093,521,0 1/1:1,207:208:99:7070,489,0 1/1:0,94:94:99:3123,241,0 1/1:0,81:81:99:2615,202,0 1/1:0,114:114:99:3688,286,0 1/1:0,99:99:99:3243,250,0 1/1:0,72:72:99:2433,190,0 1/1:0,111:111:99:3744,298,0 0/1:140,110:250:99:2889,0,3721 0/1:39,34:73:99:981,0,1066 0/1:47,55:102:99:1593,0,1348 0/1:54,39:93:99:1132,0,1573 0/1:92,76:168:99:1985,0,2559 1/1:0,161:161:99:5185,397,0 0/1:76,60:137:99:1614,0,1993 0/1:28,50:78:99:1378,0,763 1/1:0,248:248:99:8581,629,0 0/1:123,91:214:99:2721,0,3378 0/1:119,128:247:99:3707,0,3438 0/1:133,95:228:99:2636,0,3691 1/1:0,84:84:99:2865,220,0 1/1:0,98:98:99:3165,244,0 1/1:0,73:74:99:2449,196,0 0/1:48,46:94:99:1268,0,1301 1/1:1,75:76:99:2621,175,0 1/1:0,128:128:99:4264,331,0 0/1:39,52:91:99:1411,0,1048 1/1:1,117:118:99:4145,298,0 1/1:0,103:103:99:3440,268,0 1/1:0,99:99:99:3336,259,0 0/1:55,62:117:99:1543,0,1534 0/1:49,34:83:99:980,0,1380 1/1:0,95:95:99:3329,262,0 1/1:0,82:82:99:2828,223,0 1/1:0,95:96:99:3150,250,0 1/1:0,103:103:99:3658,286,0 16 57609000 . C G 2254.85 . 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T G 293.57 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.425;DP=1004;Dels=0.00;FS=5.813;HRun=0;HaplotypeScore=0.6427;InbreedingCoeff=-0.0121;MQ=59.04;MQ0=0;MQRankSum=0.066;QD=12.76;ReadPosRankSum=-1.342 GT:AD:DP:GQ:PL 0/0:17,0:17:51.16:0,51,625 0/0:14,0:14:39.12:0,39,483 0/0:13,0:13:39.12:0,39,476 0/0:56,0:56:99:0,156,1965 0/0:34,0:34:99:0,99,1241 0/0:22,0:22:66.20:0,66,834 0/0:26,0:26:78.24:0,78,974 0/0:29,0:29:84.25:0,84,1042 0/0:22,0:22:63.20:0,63,782 0/0:15,0:15:42.13:0,42,522 0/0:16,0:16:48.15:0,48,601 0/0:17,0:17:48.15:0,48,603 0/0:21,0:21:60.19:0,60,758 0/0:13,0:13:39.10:0,39,474 0/0:81,0:81:99:0,226,2783 0/0:19,0:19:54.17:0,54,675 0/0:18,0:18:54.17:0,54,660 0/1:10,13:23:99:340,0,298 0/0:39,0:39:99:0,111,1402 0/0:42,0:42:99:0,114,1426 0/0:41,0:41:99:0,117,1443 0/0:24,0:24:72.21:0,72,859 0/0:49,0:49:99:0,141,1790 0/0:20,0:20:57.18:0,57,741 0/0:30,0:30:87.26:0,87,1088 0/0:20,0:20:60.18:0,60,745 0/0:14,0:14:42.13:0,42,528 0/0:16,0:16:48.14:0,48,566 0/0:17,0:17:48.15:0,48,600 0/0:16,0:16:45.14:0,45,564 0/0:18,0:18:54.17:0,54,679 0/0:35,0:36:99:0,99,1215 0/0:28,0:28:78.25:0,78,984 0/0:23,0:23:66.20:0,66,805 0/0:14,0:14:39.12:0,39,488 0/0:12,0:12:36.11:0,36,450 0/0:28,0:28:75.22:0,75,920 0/0:12,0:12:36.10:0,36,431 0/0:14,0:14:39.12:0,39,480 0/0:11,0:11:30.09:0,30,372 0/0:9,0:9:24.07:0,24,294 0/0:15,0:15:45.14:0,45,552 16 57702274 . G T 1120.48 . AC=16;AF=0.195;AN=82;BaseQRankSum=-5.069;DP=294;Dels=0.00;FS=2.048;HRun=0;HaplotypeScore=0.2275;InbreedingCoeff=0.0159;MQ=58.69;MQ0=0;MQRankSum=0.655;QD=12.59;ReadPosRankSum=0.732 GT:AD:DP:GQ:PL 0/0:3,0:3:9.03:0,9,114 0/0:2,0:2:6.01:0,6,61 0/0:8,0:8:21.06:0,21,254 0/0:23,0:23:57.18:0,57,741 0/0:18,0:18:42.11:0,42,538 0/1:5,5:10:99:104,0,151 0/1:2,5:7:32.73:112,0,33 0/0:5,0:5:12.04:0,12,166 0/0:4,0:4:12.03:0,12,135 0/1:3,1:4:24.94:25,0,102 0/1:1,2:3:27.10:61,0,27 0/1:4,5:9:99:149,0,108 0/1:5,4:9:99:110,0,106 0/1:3,4:7:89.50:106,0,89 0/0:12,0:12:30.08:0,30,357 0/1:7,5:12:99:144,0,213 0/0:4,0:4:12.04:0,12,154 0/0:6,0:6:18.06:0,18,227 0/1:2,2:4:55.64:56,0,64 0/1:5,2:7:52.04:52,0,170 0/0:11,0:11:24.07:0,24,306 0/0:7,0:7:18.06:0,18,229 0/0:20,0:20:48.16:0,48,649 0/0:6,0:6:18.03:0,18,215 0/0:6,0:6:18.04:0,18,209 0/0:3,0:3:9.03:0,9,111 0/0:6,0:6:12.04:0,12,162 1/1:0,4:4:12.03:133,12,0 0/0:6,0:6:15.05:0,15,194 0/1:3,3:6:67.54:68,0,74 0/0:7,0:7:21.06:0,21,260 0/0:5,0:5:15.05:0,15,184 1/1:0,4:4:12.03:137,12,0 0/0:2,0:2:6:0,6,56 0/1:2,1:3:28.77:29,0,68 0/0:9,0:9:27.08:0,27,339 0/0:9,0:9:21.07:0,21,269 ./. 0/0:8,0:8:21.07:0,21,272 0/0:4,0:4:12.04:0,12,154 0/0:8,0:8:24.07:0,24,285 0/0:3,0:3:9.03:0,9,113 16 57702304 . G T 124.93 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.078;DP=297;Dels=0.00;FS=1.532;HRun=1;HaplotypeScore=0.1516;InbreedingCoeff=0.4072;MQ=58.81;MQ0=0;MQRankSum=0.468;QD=20.82;ReadPosRankSum=-1.368 GT:AD:DP:GQ:PL 0/0:2,0:2:3.01:0,3,40 0/0:3,0:3:9.03:0,9,109 0/0:7,0:7:21.07:0,21,267 0/0:15,0:15:39.13:0,39,521 0/0:16,0:16:39.13:0,39,534 0/0:7,0:7:18.05:0,18,224 0/0:7,0:7:18.06:0,18,242 0/0:6,0:6:12.04:0,12,166 0/0:6,0:6:15.05:0,15,196 0/0:4,0:4:12.04:0,12,154 0/0:6,0:6:15.05:0,15,184 0/0:6,0:6:18.05:0,18,218 0/0:6,0:6:18.06:0,18,222 0/0:8,0:8:24.05:0,24,283 0/0:10,0:10:30.09:0,30,364 0/0:12,0:12:36.11:0,36,451 0/0:7,0:7:18.06:0,18,236 0/0:7,0:7:18.06:0,18,231 0/0:5,0:5:15.04:0,15,181 0/0:8,0:8:24.05:0,24,268 0/0:8,0:8:24.08:0,24,303 0/0:5,0:5:15.05:0,15,187 0/0:13,0:13:33.10:0,33,439 0/0:6,0:6:15.05:0,15,198 0/0:6,0:6:18.06:0,18,229 0/0:3,0:3:9.03:0,9,116 0/0:7,0:7:21.07:0,21,262 0/1:0,6:6:0.13:185,15,0 0/0:2,0:2:6.02:0,6,78 0/0:9,1:10:0.91:6,0,281 0/0:6,0:6:18.06:0,18,231 0/0:8,0:8:24.07:0,24,290 0/0:7,0:7:21.06:0,21,260 0/0:4,0:4:12.04:0,12,146 0/0:2,0:2:6.02:0,6,77 0/0:14,0:14:39.12:0,39,478 0/0:12,0:12:33.10:0,33,424 0/0:4,0:4:12.03:0,12,143 0/0:8,0:8:24.08:0,24,304 0/0:7,0:7:18.04:0,18,217 0/0:8,0:8:24.06:0,24,265 0/0:3,0:3:9.03:0,9,112 16 57732862 . T C 1306.46 . AC=14;AF=0.167;AN=84;BaseQRankSum=-34.505;DP=6457;DS;Dels=0.00;FS=3200.000;HRun=3;HaplotypeScore=3.5022;InbreedingCoeff=-0.2073;MQ=58.90;MQ0=0;MQRankSum=2.684;QD=0.58;ReadPosRankSum=-33.550 GT:AD:DP:GQ:PL 0/1:72,38:110:43.84:44,0,2205 0/1:61,37:99:24.08:24,0,1990 0/0:71,44:115:87.59:0,88,2457 0/1:139,111:250:99:144,0,4459 0/1:165,83:250:29.04:29,0,5354 0/0:139,64:203:12.22:0,12,4713 0/0:131,51:182:89.15:0,89,4392 0/0:166,76:242:99:0,162,5392 0/0:79,54:133:13.90:0,14,2445 0/0:70,49:119:59.88:0,60,2210 0/0:70,45:115:61.51:0,62,2296 0/1:64,48:112:99:127,0,2059 0/1:57,35:92:64.93:65,0,1739 0/0:71,42:114:40.06:0,40,2219 0/0:195,53:249:99:0,491,6497 0/0:69,51:121:99:0,110,2390 0/0:66,42:108:9.25:0,9,2103 0/1:60,55:115:82.79:83,0,1760 0/0:142,61:203:62.84:0,63,4511 0/0:147,83:232:99:0,122,4814 0/0:151,65:216:99:0,114,4860 0/0:104,68:172:58.73:0,59,3375 0/1:121,129:250:99:678,0,3503 0/0:129,71:200:3.89:0,4,4243 0/0:138,74:212:57.92:0,58,4330 0/0:139,65:204:99:0,247,4580 0/0:55,17:72:99:0,144,1761 0/0:67,41:108:63.81:0,64,2224 0/1:58,42:100:30.84:31,0,1837 0/0:72,44:116:99:0,122,2385 0/0:65,53:118:99:0,124,2118 0/1:139,110:250:63.16:63,0,4218 0/1:93,75:169:21.72:22,0,2796 0/1:74,57:131:11.80:12,0,2317 0/0:73,50:123:64.34:0,64,2162 0/0:75,38:113:99:0,155,2463 0/1:118,76:194:60.11:60,0,3464 0/0:67,47:114:23.82:0,24,2163 0/0:66,46:112:62.22:0,62,2207 0/1:70,42:112:78.05:78,0,2110 0/0:56,31:87:45.49:0,45,1852 0/0:78,42:120:56.88:0,57,2448 16 57732862 . T TCC 7002.97 . 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G A 17455.51 . AC=8;AF=0.095;AN=84;BaseQRankSum=0.625;DP=7392;DS;Dels=0.00;FS=0.164;HRun=0;HaplotypeScore=4.0781;InbreedingCoeff=-0.1053;MQ=58.89;MQ0=0;MQRankSum=-1.020;QD=13.63;ReadPosRankSum=0.800 GT:AD:DP:GQ:PL 0/1:70,67:137:99:1870,0,1898 0/1:60,60:120:99:1656,0,1646 0/0:138,0:139:99:0,376,4530 0/0:250,0:250:99:0,701,9017 0/0:250,0:250:99:0,698,8976 0/0:244,0:244:99:0,644,8145 0/1:130,115:246:99:3261,0,3692 0/0:243,0:243:99:0,623,8039 0/1:88,80:168:99:2299,0,2452 0/1:76,69:145:99:1924,0,2049 0/0:136,0:136:99:0,367,4411 0/0:129,0:129:99:0,355,4249 0/0:103,0:103:99:0,283,3396 0/0:151,0:151:99:0,424,4978 0/0:244,0:245:99:0,689,8308 0/0:147,0:147:99:0,427,5057 0/0:125,0:125:99:0,337,4049 0/0:121,0:122:99:0,334,4040 0/0:242,0:242:99:0,641,7609 0/1:124,122:246:99:3415,0,3275 0/0:244,0:244:99:0,647,7770 0/0:178,0:178:99:0,490,5916 0/0:250,0:250:99:0,704,9184 0/0:230,0:231:99:0,566,7363 0/0:242,0:242:99:0,626,7931 0/0:248,0:248:99:0,644,8289 0/0:121,0:121:99:0,331,3978 0/0:115,0:115:99:0,325,3887 0/0:127,0:127:99:0,352,4236 0/0:139,0:139:99:0,373,4563 0/0:131,0:132:99:0,349,4218 0/0:243,0:243:99:0,662,8094 0/0:205,0:205:99:0,551,6722 0/0:160,0:160:99:0,421,5177 0/0:127,0:127:99:0,349,4289 0/0:140,0:140:99:0,382,4622 0/0:243,0:243:99:0,641,7625 0/0:136,0:136:99:0,370,4373 0/0:156,0:156:99:0,433,5195 0/0:147,0:148:99:0,412,4894 0/1:54,32:86:99:889,0,1516 0/1:63,70:133:99:2143,0,1798 16 57775651 . C T 296.16 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.431;DP=1649;Dels=0.00;FS=9.563;HRun=1;HaplotypeScore=1.1760;InbreedingCoeff=-0.0120;MQ=59.21;MQ0=0;MQRankSum=0.445;QD=10.58;ReadPosRankSum=0.785 GT:AD:DP:GQ:PL 0/0:29,0:29:78.24:0,78,979 0/0:34,0:35:90.26:0,90,1121 0/0:31,0:31:93.28:0,93,1156 0/0:99,0:101:99:0,265,3444 0/0:65,0:65:99:0,178,2370 0/0:47,0:47:99:0,114,1457 0/0:34,0:34:96.30:0,96,1249 0/0:48,0:48:99:0,129,1690 0/0:36,0:36:96.29:0,96,1204 0/0:28,0:28:69.20:0,69,849 0/0:22,0:22:63.19:0,63,777 0/0:32,0:32:87.27:0,87,1092 0/0:21,0:21:63.19:0,63,762 0/0:18,0:18:54.16:0,54,665 0/0:102,0:102:99:0,262,3273 0/0:28,0:28:75.24:0,75,948 0/0:38,0:38:99:0,102,1326 0/1:15,13:28:99:342,0,481 0/0:49,0:49:99:0,135,1641 0/0:65,0:65:99:0,177,2185 0/0:58,0:58:99:0,162,2006 0/0:33,0:33:90.27:0,90,1102 0/0:84,0:84:99:0,238,3078 0/0:39,1:40:86.65:0,87,1370 0/0:35,0:35:99:0,99,1276 0/0:36,0:36:99:0,105,1336 0/0:15,0:15:42.13:0,42,525 0/0:33,0:33:93.29:0,93,1176 0/0:22,0:22:63.19:0,63,770 0/0:34,0:34:96.30:0,96,1203 0/0:46,0:46:99:0,120,1551 0/0:59,0:59:99:0,165,2062 0/0:36,0:37:96.30:0,96,1212 0/0:21,0:21:60.18:0,60,727 0/0:34,0:34:87.28:0,87,1114 0/0:33,0:33:96.29:0,96,1193 0/0:39,1:40:99:0,105,1316 0/0:34,0:34:96.30:0,96,1206 0/0:27,0:27:78.23:0,78,952 0/0:25,0:25:75.22:0,75,918 0/0:19,0:19:51.14:0,51,612 0/0:27,0:27:75.24:0,75,956 16 57787027 . C T 1057.44 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.010;DP=1872;Dels=0.00;FS=1.249;HRun=0;HaplotypeScore=1.1196;InbreedingCoeff=0.6543;MQ=58.46;MQ0=0;MQRankSum=0.334;QD=19.58;ReadPosRankSum=-1.613 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,102,1227 0/1:14,13:27:99:357,0,363 1/1:0,27:27:63.19:781,63,0 0/0:95,0:95:99:0,229,2956 0/0:98,1:99:99:0,213,3209 0/0:51,0:51:99:0,132,1710 0/0:55,0:55:99:0,120,1595 0/0:49,0:49:99:0,129,1617 0/0:36,0:36:93.24:0,93,1107 0/0:25,0:25:72.20:0,72,833 0/0:26,0:26:66.18:0,66,792 0/0:32,0:32:84.24:0,84,990 0/0:30,0:30:75.21:0,75,899 0/0:25,0:25:63.19:0,63,779 0/0:125,0:125:99:0,286,3522 0/0:37,0:38:99:0,102,1197 0/0:27,0:27:72.20:0,72,844 0/0:20,0:20:57.13:0,57,635 0/0:67,0:68:99:0,168,1925 0/0:62,0:62:99:0,156,1898 0/0:48,0:48:99:0,120,1438 0/0:42,0:42:99:0,108,1266 0/0:109,0:109:99:0,253,3315 0/0:45,0:45:99:0,102,1373 0/0:51,0:51:99:0,123,1605 0/0:55,0:55:99:0,126,1629 0/0:30,0:30:81.19:0,81,935 0/0:27,0:27:69.20:0,69,827 0/0:31,0:31:81.21:0,81,956 0/0:38,0:38:96.28:0,96,1152 0/0:28,0:28:69.20:0,69,834 0/0:48,0:48:99:0,114,1397 0/0:39,0:39:99:0,102,1220 0/0:33,0:33:87.25:0,87,1046 0/0:37,1:38:68.86:0,69,1128 0/0:21,0:21:51.10:0,51,587 0/0:62,0:62:99:0,141,1777 0/0:39,0:39:99:0,102,1221 0/0:34,0:34:81.19:0,81,958 0/0:33,0:33:93.23:0,93,1070 0/0:29,0:29:81.22:0,81,918 0/0:34,0:34:87.26:0,87,1047 16 57787102 . A C 45.44 . AC=5;AF=0.060;AN=84;BaseQRankSum=-12.887;DP=741;Dels=0.00;FS=38.262;HRun=1;HaplotypeScore=1.1404;InbreedingCoeff=-0.1298;MQ=58.11;MQ0=0;MQRankSum=2.166;QD=0.55;ReadPosRankSum=-4.001 GT:AD:DP:GQ:PL 0/0:7,4:11:18.04:0,18,197 0/0:10,4:14:10.97:0,11,282 0/0:10,4:14:27.07:0,27,317 0/0:31,14:45:39.06:0,39,879 0/1:29,12:41:53.78:54,0,680 0/0:24,5:29:29.39:0,29,519 0/0:16,3:19:39.08:0,39,422 0/0:12,9:21:33.06:0,33,352 0/0:13,5:19:36.08:0,36,388 0/0:12,3:15:1.97:2,0,274 0/0:5,2:7:9.02:0,9,96 0/0:8,5:13:21.04:0,21,235 0/1:6,1:7:7.61:8,0,163 0/0:10,3:14:30.02:0,30,303 0/0:23,15:38:1.80:3,0,578 0/0:13,5:18:24.07:0,24,290 0/0:9,4:13:2.37:0,2,213 0/0:7,1:8:15.03:0,15,168 0/0:11,3:14:8.35:0,8,291 0/0:17,2:20:39.06:0,39,410 0/0:9,10:19:1.59:4,0,232 0/0:9,3:12:4.36:0,4,231 0/0:28,14:42:38.44:0,38,596 0/0:25,3:28:43.41:0,43,669 0/0:16,10:26:45.10:0,45,495 0/0:13,4:17:21.03:0,21,220 0/1:6,6:13:11.59:12,0,139 0/0:6,2:8:18.01:0,18,173 0/1:3,4:7:17.61:18,0,79 0/0:10,2:12:30.06:0,30,319 0/0:10,2:12:21.03:0,21,232 0/0:17,7:24:26.39:0,26,462 0/0:12,3:15:33.06:0,33,348 0/0:10,8:18:10.36:0,10,283 0/0:10,6:16:27.04:0,27,296 0/0:14,6:20:20.15:0,20,345 0/1:8,6:14:37.59:38,0,205 0/0:11,3:14:1.38:4,0,278 0/0:7,2:9:21.03:0,21,213 0/0:9,3:12:5.37:0,5,234 0/0:6,2:8:1.05:6,0,169 0/0:11,4:15:30.04:0,30,323 16 57795343 . G A 380.38 . 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G A 69064.24 . AC=64;AF=0.762;AN=84;BaseQRankSum=9.701;DP=2799;Dels=0.00;FS=2.333;HRun=0;HaplotypeScore=1.5715;InbreedingCoeff=-0.0500;MQ=59.20;MQ0=0;MQRankSum=-0.497;QD=25.56;ReadPosRankSum=2.099 GT:AD:DP:GQ:PL 0/1:21,21:42:99:648,0,528 0/1:18,36:54:99:1027,0,442 0/0:46,0:47:99:0,129,1465 0/1:80,61:141:99:1789,0,2270 0/1:63,64:127:99:1738,0,1800 1/1:0,83:83:99:2792,226,0 1/1:1,92:93:99:3191,230,0 1/1:0,85:85:99:2820,232,0 1/1:0,52:52:99:1768,147,0 1/1:0,38:38:99:1304,108,0 0/1:21,20:41:99:545,0,565 0/1:16,22:39:99:601,0,427 0/1:16,19:35:99:508,0,363 1/1:0,38:38:99:1278,105,0 1/1:0,193:194:99:5864,478,0 1/1:0,57:57:99:1812,150,0 1/1:0,37:37:99:1248,105,0 1/1:0,39:39:99:1351,111,0 1/1:0,79:79:99:2568,211,0 1/1:0,131:131:99:4203,349,0 1/1:0,68:68:99:2176,181,0 0/1:24,37:61:99:1085,0,573 1/1:1,145:146:99:4997,375,0 0/0:50,0:50:99:0,138,1671 0/1:39,41:80:99:1189,0,1110 0/1:46,22:68:99:567,0,1398 0/1:28,22:50:99:565,0,768 0/1:28,21:49:99:570,0,756 1/1:0,32:33:90.26:1078,90,0 1/1:0,48:48:99:1554,126,0 0/1:22,36:58:99:1064,0,488 1/1:0,99:100:99:3164,259,0 1/1:0,47:47:99:1502,129,0 1/1:0,53:53:99:1620,132,0 1/1:3,57:60:73.05:1848,73,0 1/1:0,50:50:99:1658,138,0 0/1:40,50:92:99:1309,0,964 0/1:24,29:53:99:799,0,615 0/1:19,27:46:99:737,0,511 1/1:0,47:47:99:1606,135,0 1/1:0,40:40:99:1334,111,0 1/1:0,48:48:99:1585,132,0 16 57803559 . A C 939.71 . 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T C 6016.98 . AC=12;AF=0.143;AN=84;BaseQRankSum=3.640;DP=1641;Dels=0.00;FS=21.915;HRun=1;HaplotypeScore=0.9784;InbreedingCoeff=0.0273;MQ=58.90;MQ0=0;MQRankSum=1.441;QD=13.64;ReadPosRankSum=-0.296 GT:AD:DP:GQ:PL 0/0:30,0:30:81.25:0,81,1011 0/0:25,0:25:69.22:0,69,872 0/1:17,8:25:99:237,0,479 0/0:59,0:59:99:0,156,1981 0/0:54,0:54:99:0,150,1949 0/0:65,0:65:99:0,166,2211 0/0:29,0:30:84.27:0,84,1102 0/0:40,0:40:99:0,102,1358 0/0:41,0:41:99:0,117,1447 0/0:36,0:36:93.24:0,93,1140 0/0:17,0:17:48.15:0,48,592 0/1:15,8:23:99:239,0,483 0/0:30,0:30:78.25:0,78,986 0/1:11,14:25:99:437,0,283 0/1:55,43:98:99:1239,0,1496 0/0:29,0:29:84.27:0,84,1059 1/1:1,21:22:25.40:719,25,0 0/0:13,0:13:36.11:0,36,454 0/1:24,27:51:99:765,0,676 0/1:33,25:58:99:730,0,889 0/0:65,0:65:99:0,162,2077 0/0:39,0:39:99:0,99,1262 0/0:70,0:70:99:0,193,2463 0/0:42,0:42:99:0,108,1429 0/1:21,16:37:99:506,0,592 0/1:17,11:29:99:340,0,546 0/0:30,1:31:51.69:0,52,1034 0/0:44,0:44:99:0,120,1507 0/0:31,0:31:75.24:0,75,979 0/1:26,15:41:99:446,0,717 0/0:36,0:36:96.29:0,96,1205 0/0:55,0:55:99:0,138,1794 0/1:19,13:32:99:358,0,552 0/0:37,0:37:99:0,99,1250 0/0:31,0:31:78.25:0,78,1003 0/0:31,0:31:90.29:0,90,1131 0/0:57,0:57:99:0,150,1880 0/0:27,0:27:75.23:0,75,934 0/0:38,0:38:99:0,102,1279 0/0:34,0:34:96.30:0,96,1201 0/0:30,0:30:75.23:0,75,949 0/0:33,0:33:90.28:0,90,1139 16 57937820 . C T 1155.99 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.400;DP=1420;Dels=0.00;FS=0.606;HRun=0;HaplotypeScore=0.8339;InbreedingCoeff=-0.0244;MQ=58.77;MQ0=0;MQRankSum=0.299;QD=15.01;ReadPosRankSum=1.026 GT:AD:DP:GQ:PL 0/0:28,0:28:81.20:0,81,893 0/0:22,0:22:54.14:0,54,605 0/0:24,0:24:66.20:0,66,806 0/0:55,0:55:99:0,153,1932 0/0:51,0:51:99:0,147,1889 0/1:21,28:49:99:871,0,527 0/1:17,11:28:99:348,0,491 0/0:26,0:26:75.23:0,75,910 0/0:35,0:35:99:0,99,1136 0/0:27,0:27:78.20:0,78,846 0/0:23,0:23:60.16:0,60,696 0/0:16,0:16:48.13:0,48,551 0/0:25,0:25:69.18:0,69,777 0/0:30,0:30:87.24:0,87,1037 0/0:87,0:87:99:0,226,2666 0/0:29,0:30:84.24:0,84,993 0/0:23,0:23:54.15:0,54,664 0/0:12,0:12:33.09:0,33,383 0/0:49,0:49:99:0,132,1581 0/0:58,0:58:99:0,150,1798 0/0:49,0:49:99:0,132,1549 0/0:31,0:31:90.22:0,90,1012 0/0:56,0:56:99:0,156,1947 0/0:40,0:40:99:0,105,1335 0/0:26,0:26:72.23:0,72,943 0/0:38,0:38:99:0,108,1353 0/0:28,0:28:75.20:0,75,882 0/0:39,0:39:99:0,108,1268 0/0:27,0:27:78.23:0,78,926 0/0:26,0:26:72.20:0,72,834 0/0:33,0:33:90.26:0,90,1063 0/0:39,0:39:99:0,105,1226 0/0:23,0:23:66.18:0,66,750 0/0:23,0:23:69.17:0,69,786 0/0:24,0:24:66.18:0,66,751 0/0:36,0:36:99:0,102,1169 0/0:45,0:45:99:0,126,1432 0/0:27,1:28:62.50:0,63,866 0/0:29,0:29:75.21:0,75,886 0/0:26,0:26:72.18:0,72,833 0/0:23,0:23:63.17:0,63,734 0/0:33,0:33:90.24:0,90,1040 16 57937856 . G C 21847.10 . AC=69;AF=0.841;AN=82;BaseQRankSum=-2.120;DP=1042;Dels=0.00;FS=5.407;HRun=2;HaplotypeScore=3.5016;InbreedingCoeff=0.3598;MQ=58.66;MQ0=0;MQRankSum=-0.500;QD=24.25;ReadPosRankSum=-0.028 GT:AD:DP:GQ:PL 1/1:0,18:18:48.12:533,48,0 1/1:0,16:16:42.11:472,42,0 1/1:1,13:19:33.08:387,33,0 1/1:0,44:44:99:1439,114,0 0/1:30,9:39:99:201,0,848 1/1:0,26:26:72.20:847,72,0 1/1:0,21:21:51.12:586,51,0 1/1:0,23:23:66.11:751,66,0 1/1:0,27:27:69.13:753,69,0 1/1:0,14:14:39.09:431,39,0 1/1:0,19:19:57.14:626,57,0 1/1:0,12:18:36.07:387,36,0 1/1:0,17:17:51.12:575,51,0 1/1:1,11:26:33.10:390,33,0 0/0:41,1:67:99:0,105,1205 0/1:16,11:27:99:283,0,475 ./.:.:21:.:0,0,0 1/1:0,10:10:30.08:347,30,0 1/1:1,12:28:36.11:429,36,0 0/0:26,0:49:69.16:0,69,791 0/1:20,21:41:99:510,0,516 0/1:20,9:30:99:184,0,545 1/1:0,33:33:96.28:1160,96,0 0/1:17,8:25:99:187,0,526 1/1:0,23:23:63.16:753,63,0 0/0:16,0:25:39.12:0,39,487 1/1:0,23:23:57.12:611,57,0 1/1:0,27:27:72.18:805,72,0 1/1:0,20:20:60.15:694,60,0 0/1:11,9:20:99:219,0,310 0/1:16,9:25:99:234,0,415 1/1:0,32:32:90.25:1056,90,0 1/1:0,15:15:42.10:482,42,0 1/1:0,16:16:48.12:536,48,0 1/1:0,22:22:66.14:721,66,0 1/1:0,21:21:60.14:660,60,0 1/1:0,28:28:78.21:908,78,0 1/1:1,16:17:28.44:511,28,0 1/1:0,22:22:51.12:577,51,0 1/1:0,19:19:57.14:624,57,0 1/1:0,10:10:30.08:331,30,0 1/1:0,19:19:54.16:645,54,0 16 57949224 . G T 4229.03 . AC=12;AF=0.143;AN=84;BaseQRankSum=-11.983;DP=1388;Dels=0.00;FS=0.752;HRun=0;HaplotypeScore=0.5190;InbreedingCoeff=0.0278;MQ=58.92;MQ0=0;MQRankSum=-0.474;QD=14.34;ReadPosRankSum=-1.703 GT:AD:DP:GQ:PL 0/0:21,0:21:60.17:0,60,747 0/0:24,0:24:69.21:0,69,856 0/0:25,0:25:69.20:0,69,876 0/0:65,0:65:99:0,190,2517 0/0:60,0:60:99:0,178,2352 0/1:29,22:51:99:578,0,955 0/0:36,0:36:96.30:0,96,1269 0/1:23,13:36:99:373,0,736 0/0:31,0:31:84.27:0,84,1088 0/0:19,0:19:48.15:0,48,617 0/1:17,17:34:99:439,0,435 0/0:32,0:32:84.27:0,84,1091 0/0:31,0:31:78.24:0,78,993 0/0:36,0:36:99:0,99,1235 0/0:96,0:96:99:0,241,3122 0/1:10,5:15:99:146,0,276 0/0:23,0:23:63.20:0,63,821 1/1:0,23:23:69.21:829,69,0 0/1:22,19:41:99:496,0,656 0/0:43,0:43:99:0,108,1413 0/0:30,0:30:81.25:0,81,1029 0/0:14,0:14:39.12:0,39,499 0/0:78,0:78:99:0,217,2905 0/0:28,0:28:81.23:0,81,1051 0/0:50,0:50:99:0,135,1834 0/0:35,0:35:99:0,99,1297 0/0:17,0:17:45.14:0,45,570 0/0:19,0:19:54.17:0,54,690 0/0:20,0:20:45.14:0,45,599 0/0:24,0:24:72.23:0,72,915 0/0:24,0:24:66.20:0,66,827 0/0:40,0:41:99:0,102,1299 0/0:45,0:45:99:0,126,1579 0/1:11,9:20:99:274,0,343 0/1:4,8:12:99:257,0,111 0/0:22,0:22:63.20:0,63,809 0/0:46,0:46:99:0,120,1548 0/0:31,0:31:81.24:0,81,1010 0/1:10,14:24:99:387,0,287 0/1:15,10:25:99:269,0,379 0/1:8,6:14:99:181,0,202 0/0:27,0:27:81.25:0,81,1008 16 57953010 . C G 1280.11 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.672;DP=2161;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=1.2223;InbreedingCoeff=-0.0244;MQ=59.30;MQ0=0;MQRankSum=-0.187;QD=14.07;ReadPosRankSum=0.166 GT:AD:DP:GQ:PL 0/0:34,0:34:93.28:0,93,1143 0/0:30,0:30:81.23:0,81,1002 0/0:39,0:39:99:0,111,1333 0/0:93,0:93:99:0,235,3085 0/0:59,0:59:99:0,166,2154 0/0:62,0:62:99:0,163,2124 0/0:50,0:50:99:0,126,1660 0/0:59,0:59:99:0,156,2025 0/0:52,0:52:99:0,144,1760 0/0:21,0:21:63.18:0,63,742 0/1:25,20:45:99:619,0,737 0/0:39,0:39:99:0,99,1263 0/0:38,0:38:99:0,102,1287 0/0:41,0:41:99:0,111,1318 0/0:168,0:168:99:0,427,5294 0/0:45,0:45:99:0,132,1565 0/0:36,0:36:99:0,105,1229 0/0:25,0:25:60.18:0,60,767 0/0:64,0:65:99:0,180,2133 0/0:84,1:85:99:0,223,2688 0/0:72,0:72:99:0,199,2370 0/0:42,0:42:99:0,114,1389 0/0:99,0:99:99:0,271,3514 0/0:55,0:55:99:0,141,1856 0/0:74,0:74:99:0,202,2569 0/0:51,0:51:99:0,129,1665 0/0:31,0:31:84.24:0,84,1012 0/0:36,0:36:99:0,105,1248 0/0:30,0:30:81.24:0,81,994 0/0:33,0:33:93.25:0,93,1115 0/0:37,0:37:99:0,99,1252 0/0:68,0:68:99:0,178,2223 0/0:54,0:54:99:0,138,1733 0/0:32,0:32:90.26:0,90,1080 0/0:51,0:51:99:0,141,1681 0/0:46,0:46:99:0,120,1507 0/0:75,0:75:99:0,199,2415 0/0:38,0:38:99:0,105,1297 0/1:22,24:46:99:724,0,615 0/0:41,0:41:99:0,114,1366 0/0:26,1:27:49.66:0,50,881 0/0:37,0:37:99:0,108,1291 16 57954448 . A G 1897.03 . AC=3;AF=0.036;AN=84;BaseQRankSum=8.425;DP=1934;Dels=0.00;FS=17.222;HRun=0;HaplotypeScore=1.0121;InbreedingCoeff=-0.0370;MQ=59.10;MQ0=0;MQRankSum=-0.911;QD=10.04;ReadPosRankSum=0.494 GT:AD:DP:GQ:PL 0/0:31,0:31:84.24:0,84,995 0/0:29,0:29:81.24:0,81,949 0/0:26,0:26:72.20:0,72,844 0/0:120,0:122:99:0,322,3859 0/0:115,0:115:99:0,313,3740 0/0:65,0:65:99:0,175,2106 0/0:64,0:65:99:0,175,2088 0/0:89,0:89:99:0,232,2773 0/0:26,0:26:72.15:0,72,813 0/0:51,0:51:99:0,135,1592 0/0:26,0:26:69.21:0,69,847 0/0:26,0:26:72.20:0,72,838 0/0:20,0:20:54.16:0,54,639 0/0:34,0:34:99:0,99,1182 0/0:87,0:88:99:0,229,2687 0/0:35,0:35:99:0,105,1200 0/0:20,0:20:57.15:0,57,651 0/0:27,0:27:72.21:0,72,852 0/0:49,0:49:99:0,126,1501 0/0:73,0:73:99:0,190,2278 0/0:77,0:78:99:0,217,2493 0/0:49,0:50:99:0,132,1545 0/1:56,40:97:99:1195,0,1531 0/1:22,13:35:99:376,0,575 0/0:60,0:60:99:0,171,2030 0/1:39,17:57:99:401,0,1094 0/0:35,0:35:99:0,99,1177 0/0:25,1:26:72.21:0,72,854 0/0:28,0:28:84.25:0,84,978 0/0:32,0:32:96.29:0,96,1135 0/0:37,0:37:99:0,111,1325 0/0:50,0:50:99:0,123,1501 0/0:43,0:43:99:0,114,1363 0/0:33,0:33:93.26:0,93,1090 0/0:31,0:31:90.27:0,90,1072 0/0:29,0:29:81.24:0,81,965 0/0:39,0:40:99:0,108,1292 0/0:41,1:42:75.19:0,75,1237 0/0:35,0:35:87.23:0,87,1010 0/0:35,0:35:96.27:0,96,1131 0/0:26,0:26:78.23:0,78,912 0/0:18,0:18:48.14:0,48,569 16 57965676 . C T 650.19 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.530;DP=1695;Dels=0.00;FS=0.770;HRun=0;HaplotypeScore=2.0018;InbreedingCoeff=-0.0244;MQ=59.02;MQ0=0;MQRankSum=0.281;QD=13.27;ReadPosRankSum=-0.278 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,102,1128 0/0:33,0:33:87.22:0,87,984 0/0:24,0:24:72.15:0,72,782 0/0:73,0:73:99:0,187,2300 0/0:70,0:70:99:0,193,2305 0/0:51,0:51:99:0,135,1650 0/0:40,0:40:99:0,108,1317 0/0:46,0:46:99:0,135,1637 0/0:40,0:40:99:0,102,1168 0/0:40,0:40:99:0,105,1173 0/0:33,0:33:99:0,99,1137 0/0:22,0:22:63.16:0,63,700 0/0:27,0:27:66.16:0,66,752 0/0:28,0:28:84.14:0,84,911 0/0:108,0:110:99:0,289,3294 0/0:30,0:30:78.19:0,78,862 0/0:27,0:27:69.18:0,69,786 0/0:33,0:33:90.23:0,90,1025 0/0:36,0:36:99:0,105,1174 0/0:66,0:66:99:0,177,2051 0/0:57,0:58:99:0,141,1580 0/0:19,0:19:51.11:0,51,560 0/0:72,0:72:99:0,184,2251 0/0:37,0:37:90.29:0,90,1153 0/0:46,0:46:99:0,123,1486 0/0:42,0:42:99:0,108,1321 0/0:32,0:32:87.22:0,87,998 0/0:32,0:32:84.21:0,84,943 0/0:31,0:31:90.18:0,90,975 0/0:44,0:44:99:0,117,1322 0/0:31,0:31:87.18:0,87,946 0/0:65,0:65:99:0,168,1946 0/0:33,0:33:78.21:0,78,897 0/1:12,15:27:99:446,0,241 0/1:12,10:22:99:267,0,340 0/0:46,0:46:99:0,105,1229 0/0:46,1:47:99:0,117,1356 0/0:31,0:31:87.23:0,87,978 0/0:27,0:27:66.18:0,66,752 0/0:32,0:32:90.25:0,90,1027 0/0:24,0:24:63.13:0,63,678 0/0:28,0:28:66.18:0,66,765 16 57994790 . T C 353.31 . AC=11;AF=0.131;AN=84;BaseQRankSum=-13.132;DP=874;Dels=0.00;FS=847.842;HRun=2;HaplotypeScore=0.6596;InbreedingCoeff=-0.2011;MQ=57.90;MQ0=0;MQRankSum=3.227;QD=1.64;ReadPosRankSum=-11.737 GT:AD:DP:GQ:PL 0/0:11,3:14:2.72:1,0,322 0/0:15,6:21:8.70:0,9,466 0/0:13,3:16:9.13:0,9,428 0/1:39,15:54:99:136,0,1255 0/0:32,11:43:1.82:0,2,1048 0/0:26,7:33:78.25:0,78,1013 0/0:30,4:34:80.52:0,81,992 0/0:29,5:34:53.67:0,54,1002 0/0:14,6:20:12.61:0,13,460 0/1:3,1:4:13.66:14,0,101 0/0:9,5:14:24.92:0,25,270 0/0:17,7:24:0.61:0,1,458 0/1:10,4:14:2.41:2,0,289 0/0:6,2:8:15.05:0,15,194 0/1:40,16:56:50.48:50,0,1215 0/0:13,1:14:39.12:0,39,468 0/0:13,3:16:10.58:0,11,448 0/0:7,1:8:18.06:0,18,230 0/1:11,5:16:76.76:77,0,358 0/0:16,6:22:20.55:0,21,542 0/0:15,2:17:44.35:0,44,520 0/0:16,5:21:26.45:0,26,545 0/0:48,12:60:7.25:0,7,1599 0/0:16,3:19:47.33:0,47,562 0/0:21,5:26:20.43:0,20,692 0/0:21,4:25:22.86:0,23,688 0/1:6,5:11:54.65:55,0,198 0/1:7,2:9:4.63:5,0,209 0/0:9,4:13:2.01:2,0,243 0/0:13,1:14:10.47:0,10,423 0/1:5,2:7:7.64:8,0,168 0/0:28,5:33:54.47:0,54,921 0/1:12,5:17:35.76:36,0,389 0/0:7,1:8:15.93:0,16,188 0/1:7,3:10:38.14:38,0,194 0/0:11,3:14:3:0,0,312 0/0:30,6:36:22.53:0,23,920 0/0:11,1:12:33.10:0,33,399 0/0:14,4:18:12.51:0,13,462 0/0:9,2:11:2.34:1,0,307 0/0:8,2:10:24.07:0,24,285 0/1:12,6:18:53.26:53,0,286 16 57996932 . G A 27039.11 . AC=45;AF=0.536;AN=84;BaseQRankSum=-3.836;DP=2166;Dels=0.00;FS=4.958;HRun=0;HaplotypeScore=1.3581;InbreedingCoeff=0.1863;MQ=59.06;MQ0=0;MQRankSum=0.515;QD=17.88;ReadPosRankSum=-1.122 GT:AD:DP:GQ:PL 1/1:0,40:41:99:1221,105,0 0/1:18,11:29:99:262,0,431 0/0:40,0:40:99:0,105,1233 0/1:59,47:106:99:1122,0,1622 0/0:86,0:86:99:0,220,2791 0/0:53,0:53:99:0,129,1637 0/0:54,1:55:99:0,111,1733 0/1:29,32:64:99:746,0,733 0/1:16,19:36:99:461,0,346 1/1:0,34:34:87.26:1047,87,0 0/1:22,17:39:99:397,0,613 1/1:0,31:33:93.25:1075,93,0 1/1:0,28:28:75.20:883,75,0 0/1:21,21:47:99:533,0,456 0/0:138,0:140:99:0,331,3881 0/0:41,0:41:99:0,111,1271 0/0:41,0:41:99:0,99,1144 1/1:3,36:39:37.82:1063,38,0 1/1:0,61:66:99:1809,153,0 0/1:59,44:103:99:1045,0,1388 0/1:38,43:81:99:1155,0,849 0/0:60,0:60:99:0,159,1852 1/1:0,77:79:99:2300,198,0 1/1:0,34:34:81.21:978,81,0 0/1:36,20:56:99:391,0,1043 0/1:23,19:44:99:413,0,624 1/1:1,26:28:72.20:841,72,0 1/1:1,30:33:90.19:1003,90,0 0/1:14,21:35:99:519,0,283 1/1:1,45:47:82.53:1349,83,0 1/1:0,34:35:84.18:999,84,0 0/1:39,27:68:99:632,0,931 0/1:27,23:50:99:539,0,687 0/1:15,16:32:99:407,0,382 0/0:42,0:42:99:0,105,1261 1/1:0,34:34:81.23:976,81,0 0/1:44,35:83:99:864,0,1113 0/1:24,16:40:99:420,0,544 1/1:0,42:42:99:1272,111,0 0/0:53,0:53:99:0,135,1565 0/1:13,13:26:99:319,0,338 0/0:42,1:43:82.01:0,82,1260 16 57996960 . C T 49066.10 . AC=70;AF=0.833;AN=84;BaseQRankSum=2.496;DP=1850;Dels=0.00;FS=1.064;HRun=0;HaplotypeScore=1.8196;InbreedingCoeff=0.1429;MQ=59.04;MQ0=0;MQRankSum=-0.033;QD=27.75;ReadPosRankSum=-1.669 GT:AD:DP:GQ:PL 1/1:0,39:39:93.29:1160,93,0 0/1:20,12:32:99:347,0,537 0/0:40,0:40:99:0,108,1246 1/1:0,77:77:99:2459,199,0 0/1:34,30:65:99:839,0,957 0/0:42,0:42:99:0,108,1316 0/1:20,22:42:99:682,0,480 0/1:25,24:50:99:696,0,694 1/1:0,33:34:87.26:1061,87,0 1/1:0,28:28:75.22:885,75,0 1/1:0,31:31:84.26:1030,84,0 1/1:0,31:31:87.26:1041,87,0 1/1:0,22:22:60.19:740,60,0 0/1:20,27:49:99:698,0,540 1/1:0,128:130:99:3829,310,0 0/1:18,19:37:99:527,0,465 0/1:13,22:35:99:563,0,301 1/1:1,36:37:69.81:1168,70,0 1/1:0,57:57:99:1860,156,0 1/1:0,71:71:99:2348,193,0 1/1:0,65:65:99:2063,171,0 1/1:0,52:52:99:1683,138,0 1/1:0,68:68:99:2390,196,0 1/1:0,26:26:69.19:853,69,0 1/1:0,42:43:99:1499,123,0 1/1:0,35:35:99:1219,99,0 1/1:0,30:30:75.23:925,75,0 1/1:0,37:37:99:1218,102,0 1/1:0,30:30:84.25:1018,84,0 1/1:0,37:37:99:1225,102,0 1/1:0,32:32:87.27:1069,87,0 0/1:29,24:53:99:676,0,701 1/1:0,42:43:99:1225,99,0 0/1:13,15:28:99:419,0,343 0/1:20,16:36:99:397,0,572 1/1:0,35:35:93.28:1112,93,0 1/1:1,62:63:99:2045,171,0 1/1:0,40:40:99:1308,111,0 1/1:0,39:39:99:1318,111,0 1/1:0,49:49:99:1582,132,0 1/1:0,23:24:63.19:751,63,0 1/1:0,36:36:93.27:1139,93,0 16 58035429 . C A 161.57 . AC=4;AF=0.048;AN=84;BaseQRankSum=-0.402;DP=416;Dels=0.00;FS=1.311;HRun=0;HaplotypeScore=0.3500;InbreedingCoeff=0.1420;MQ=58.92;MQ0=0;MQRankSum=2.125;QD=8.50;ReadPosRankSum=-1.837 GT:AD:DP:GQ:PL 0/0:14,0:14:33.09:0,33,387 0/0:7,0:7:21.05:0,21,232 0/0:8,0:8:24.05:0,24,268 0/0:33,0:33:81.23:0,81,1013 0/0:17,0:17:48.15:0,48,612 0/0:7,0:7:21.06:0,21,257 0/0:18,0:18:42.13:0,42,535 0/0:15,0:15:33.08:0,33,387 0/0:5,0:5:15.04:0,15,169 0/0:8,0:8:18.05:0,18,219 0/1:2,5:7:10.65:128,0,11 0/0:3,0:3:9.02:0,9,100 0/0:8,0:8:18.04:0,18,216 0/0:6,0:6:15.04:0,15,182 0/0:32,0:32:75.21:0,75,919 0/0:8,0:8:24.06:0,24,280 0/0:3,0:3:6.01:0,6,65 0/0:6,0:6:18.04:0,18,203 0/0:5,0:5:12.03:0,12,145 0/0:16,0:16:39.12:0,39,498 0/0:12,0:12:36.07:0,36,400 0/0:5,0:5:12.03:0,12,125 0/0:31,0:31:75.23:0,75,967 0/0:12,0:12:27.09:0,27,365 0/0:15,0:15:39.07:0,39,455 0/0:11,0:11:21.04:0,21,245 0/0:3,0:3:9.02:0,9,102 0/0:7,0:7:15.04:0,15,180 0/0:10,0:10:24.05:0,24,267 0/0:8,0:8:21.06:0,21,252 0/0:6,1:7:0.70:8,0,195 0/0:13,0:13:36.09:0,36,424 0/1:3,2:5:57.10:57,0,90 0/0:7,0:7:21.05:0,21,233 0/0:1,0:1:3.01:0,3,39 0/0:9,0:9:27.06:0,27,290 0/0:15,0:15:33.09:0,33,382 0/0:7,0:7:18.05:0,18,216 0/0:3,0:3:9.01:0,9,97 0/1:5,1:6:26.55:27,0,81 0/1:0,1:1:1.76:36,3,0 0/0:2,0:2:6.01:0,6,62 16 58054099 . C G 1801.58 . AC=4;AF=0.048;AN=84;BaseQRankSum=-2.737;DP=2528;Dels=0.00;FS=2.081;HRun=1;HaplotypeScore=1.3483;InbreedingCoeff=-0.0500;MQ=59.06;MQ0=0;MQRankSum=1.272;QD=10.99;ReadPosRankSum=-1.352 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,120,1537 0/0:47,0:47:99:0,117,1515 0/0:53,0:53:99:0,141,1820 0/0:114,0:114:99:0,277,3766 0/0:103,0:103:99:0,250,3407 0/0:109,0:109:99:0,256,3514 0/0:68,0:68:99:0,175,2417 0/0:84,0:84:99:0,202,2785 0/0:44,0:44:99:0,120,1549 0/0:59,1:60:99:0,114,1864 0/1:22,20:42:99:556,0,692 0/0:49,0:49:99:0,126,1619 0/0:35,1:36:93.29:0,93,1182 0/0:50,0:50:99:0,135,1720 0/0:162,0:162:99:0,418,5350 0/0:50,0:50:99:0,129,1655 0/0:57,0:57:99:0,156,1976 0/0:47,0:47:99:0,120,1546 0/0:53,0:53:99:0,144,1802 0/0:65,0:65:99:0,156,2044 0/0:56,0:56:99:0,153,1961 0/0:43,0:43:99:0,105,1381 0/0:102,0:102:99:0,265,3639 0/0:72,0:72:99:0,187,2541 0/0:82,0:83:99:0,214,2944 0/0:58,0:58:99:0,153,2095 0/0:41,0:41:99:0,108,1394 0/0:48,0:48:99:0,126,1579 0/0:38,0:38:99:0,108,1333 0/0:59,0:59:99:0,153,1976 0/0:48,0:48:99:0,129,1645 0/0:57,0:57:99:0,147,1891 0/1:23,16:39:99:476,0,630 0/0:49,1:50:99:0,102,1711 0/0:47,0:47:99:0,126,1599 0/0:65,0:65:99:0,172,2205 0/0:62,0:62:99:0,153,1990 0/0:40,0:40:99:0,105,1337 0/0:44,0:44:99:0,126,1579 0/1:32,20:52:99:596,0,990 0/1:21,10:31:99:260,0,624 0/0:56,0:56:99:0,150,1931 16 58071397 . T TA 560.78 . AC=16;AF=0.190;AN=84;BaseQRankSum=5.217;DP=1201;FS=347.562;HRun=1;HaplotypeScore=143.9749;InbreedingCoeff=-0.2628;MQ=52.45;MQ0=0;MQRankSum=-6.494;QD=1.18;ReadPosRankSum=-9.352 GT:AD:DP:GQ:PL 0/0:15,0:15:2.19:0,2,349 0/0:27,0:27:9.40:0,9,391 0/0:34,0:34:15.29:0,15,776 0/1:43,0:43:62.44:62,0,595 0/1:49,0:49:52.43:52,0,631 0/1:26,1:27:4.34:4,0,502 0/1:23,1:24:15.87:16,0,141 0/1:34,0:32:99:212,0,311 0/0:18,0:18:12.46:0,12,267 0/1:31,1:32:10.20:10,0,511 0/0:24,0:24:1.15:0,1,338 0/0:17,0:17:15.11:0,15,354 0/0:21,0:21:38.94:0,39,453 0/0:19,0:19:41.33:0,41,498 0/0:61,0:61:81.34:0,81,1301 0/0:21,0:21:36.12:0,36,465 0/0:21,0:21:33.10:0,33,421 0/0:20,0:20:35.82:0,36,393 0/0:40,0:40:44.63:0,45,945 0/0:45,0:45:1.02:0,1,712 0/1:39,0:39:3.20:3,0,684 0/1:25,0:25:7.03:7,0,545 0/1:40,1:41:90.20:90,0,580 0/0:34,0:34:42.11:0,42,511 0/0:28,0:28:14.79:0,15,521 0/1:14,0:13:33.82:34,0,170 0/0:17,1:18:1.80:3,0,265 0/0:20,0:20:33.10:0,33,421 0/1:26,0:26:19.80:20,0,339 0/1:20,1:21:20.65:21,0,404 0/0:29,0:29:51.16:0,51,653 0/0:53,0:53:30.43:0,30,1129 0/0:31,0:31:28.06:0,28,598 0/0:22,0:22:12.33:0,12,401 0/0:21,1:22:35.33:0,35,436 0/1:30,0:30:64.34:64,0,451 0/0:35,0:35:54.17:0,54,693 0/1:15,0:15:8.79:9,0,249 0/1:26,0:26:21.76:22,0,467 0/0:24,0:24:4.27:0,4,458 0/1:29,0:29:87.38:87,0,571 0/0:27,0:27:36.04:0,36,446 16 58071399 . C A 416.64 . 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G C 200.72 . 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G A 8337.20 . AC=4;AF=0.048;AN=84;BaseQRankSum=-4.620;DP=5403;DS;Dels=0.00;FS=13.826;HRun=2;HaplotypeScore=2.1548;InbreedingCoeff=-0.0500;MQ=59.42;MQ0=0;MQRankSum=1.207;QD=14.33;ReadPosRankSum=-1.050 GT:AD:DP:GQ:PL 0/0:97,0:97:99:0,271,3407 0/0:112,0:112:99:0,310,3918 0/0:100,0:100:99:0,292,3639 0/0:218,0:218:99:0,581,7847 0/0:228,0:228:99:0,635,8669 0/1:102,119:221:99:3474,0,3171 0/1:108,85:193:99:2482,0,3436 0/0:222,0:222:99:0,590,8048 0/0:97,0:97:99:0,280,3556 0/0:74,0:74:99:0,205,2583 0/0:94,0:95:99:0,262,3288 0/0:90,1:91:99:0,223,3210 0/0:80,0:80:99:0,229,2884 0/0:78,0:78:99:0,214,2684 0/0:249,0:250:99:0,653,8336 0/0:81,0:81:99:0,205,2603 0/0:105,0:105:99:0,298,3735 0/0:87,0:87:99:0,244,3102 0/0:135,0:135:99:0,367,4596 0/0:134,0:134:99:0,349,4446 0/0:136,0:137:99:0,361,4575 0/0:65,0:65:99:0,178,2215 0/0:247,0:247:99:0,671,9190 0/0:212,0:212:99:0,545,7461 0/0:204,0:204:99:0,554,7566 0/0:214,0:215:99:0,569,7734 0/0:78,0:78:99:0,220,2771 0/0:97,0:97:99:0,274,3457 0/0:91,0:91:99:0,256,3211 0/0:107,0:107:99:0,295,3751 0/0:96,0:96:99:0,268,3388 0/0:133,0:133:99:0,334,4309 0/0:110,0:111:99:0,298,3775 0/0:104,1:105:99:0,289,3621 0/0:86,0:87:99:0,238,3014 0/0:110,0:111:99:0,286,3658 0/0:115,0:116:99:0,331,4176 0/0:123,0:123:99:0,334,4198 0/0:100,0:100:99:0,286,3581 0/1:50,40:90:99:1120,0,1509 0/1:35,43:78:99:1260,0,1063 0/0:102,0:102:99:0,286,3607 16 58575489 . G A 53174.77 . 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A C 226117.49 . AC=61;AF=0.726;AN=84;BaseQRankSum=39.969;DP=9774;DS;Dels=0.00;FS=5.514;HRun=1;HaplotypeScore=5.8287;InbreedingCoeff=-0.1376;MQ=59.45;MQ0=0;MQRankSum=1.128;QD=24.28;ReadPosRankSum=-0.837 GT:AD:DP:GQ:PL 1/1:1,229:230:99:7465,602,0 1/1:0,223:223:99:7412,599,0 1/1:0,184:184:99:6183,493,0 0/1:134,115:250:99:3202,0,3517 1/1:0,250:250:99:8786,674,0 0/1:125,124:250:99:3625,0,3360 0/1:123,127:250:99:3632,0,3278 1/1:0,249:250:99:8331,638,0 1/1:0,222:222:99:7653,611,0 1/1:0,185:185:99:6145,487,0 1/1:0,200:201:99:6720,539,0 0/1:118,112:230:99:3212,0,3048 0/0:207,3:210:99:0,522,6547 0/1:133,117:250:99:3325,0,3577 0/1:117,131:250:99:3634,0,2955 0/1:102,125:228:99:3500,0,2740 1/1:0,230:230:99:7855,626,0 0/1:111,120:232:99:3375,0,2966 0/1:133,117:250:99:3119,0,3670 1/1:0,250:250:99:8392,668,0 0/0:245,4:250:99:0,659,7774 0/1:121,129:250:99:3664,0,3254 0/1:117,133:250:99:3805,0,3052 1/1:1,249:250:99:8913,645,0 1/1:0,250:250:99:8951,677,0 1/1:0,250:250:99:8752,659,0 0/1:104,75:179:99:2063,0,2839 1/1:0,219:219:99:7340,590,0 0/1:104,91:196:99:2577,0,2931 1/1:1,236:237:99:8063,610,0 1/1:0,195:195:99:6704,533,0 0/1:126,124:250:99:3285,0,3353 1/1:0,246:246:99:8131,644,0 0/1:107,113:220:99:3265,0,2900 1/1:1,241:242:99:8209,618,0 0/1:132,117:249:99:3287,0,3672 1/1:1,247:248:99:8018,637,0 1/1:1,249:250:99:8248,628,0 1/1:0,215:215:99:7224,575,0 0/1:121,127:248:99:3592,0,3270 0/1:109,106:215:99:2980,0,2969 0/1:120,119:240:99:3480,0,3378 16 61689597 . A G 336.19 . 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A C 128103.88 . AC=71;AF=0.845;AN=84;BaseQRankSum=-12.116;DP=4844;DS;Dels=0.00;FS=0.748;HRun=0;HaplotypeScore=2.3019;InbreedingCoeff=-0.1831;MQ=59.48;MQ0=0;MQRankSum=1.240;QD=26.45;ReadPosRankSum=-0.581 GT:AD:DP:GQ:PL 1/1:0,95:95:99:3001,256,0 0/1:46,31:77:99:732,0,1270 0/1:46,47:93:99:1273,0,1311 1/1:0,221:221:99:7432,590,0 1/1:0,210:210:99:7293,566,0 1/1:0,182:182:99:6222,497,0 0/1:76,77:153:99:2182,0,2214 0/1:87,82:169:99:2276,0,2449 1/1:1,88:90:99:2734,208,0 1/1:0,84:84:99:2650,229,0 1/1:0,68:68:99:2173,183,0 0/1:43,40:83:99:1095,0,1271 0/1:60,33:93:99:809,0,1714 0/1:50,37:87:99:974,0,1441 1/1:0,250:250:99:7897,677,0 1/1:0,71:71:99:2203,187,0 1/1:0,73:73:99:2476,214,0 1/1:1,68:69:99:2174,154,0 1/1:0,139:139:99:4346,367,0 1/1:0,151:151:99:4681,394,0 0/1:87,62:149:99:1503,0,2415 0/1:48,46:94:99:1162,0,1405 1/1:0,223:223:99:7477,584,0 1/1:1,145:146:99:4867,345,0 1/1:0,178:178:99:5899,457,0 1/1:1,130:131:99:4320,304,0 1/1:0,66:66:99:2043,174,0 1/1:0,91:93:99:2903,247,0 1/1:0,66:66:99:2150,186,0 1/1:0,87:87:99:2827,238,0 1/1:0,80:80:99:2680,229,0 0/1:64,55:119:99:1393,0,1774 1/1:0,97:97:99:3142,271,0 1/1:0,81:81:99:2650,226,0 1/1:0,96:96:99:3125,265,0 1/1:0,97:97:99:3088,262,0 0/1:83,52:135:99:1247,0,2429 0/1:51,47:98:99:1278,0,1455 1/1:0,89:89:99:2749,235,0 1/1:0,101:101:99:3313,286,0 0/1:38,34:72:99:869,0,1145 1/1:0,87:88:99:2795,241,0 16 65022114 . C T 69797.81 . 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G A 21651.70 . 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A T 1163.77 . 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C T 425.87 . 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C T 5516.90 . 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C T 1574.29 . 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G C 7.47 . 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T C 21.11 . 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C A 209.75 . AC=2;AF=0.025;AN=80;BaseQRankSum=-2.467;DP=228;Dels=0.00;FS=18.079;HRun=0;HaplotypeScore=0.2370;InbreedingCoeff=0.2749;MQ=58.69;MQ0=0;MQRankSum=0.928;QD=13.98;ReadPosRankSum=0.998 GT:AD:DP:GQ:PL 0/0:9,0:9:24.07:0,24,304 0/0:5,0:5:15.05:0,15,194 0/0:2,0:2:3.01:0,3,38 0/0:13,0:13:39.12:0,39,507 0/0:13,0:13:36.10:0,36,449 0/0:4,0:4:12.03:0,12,138 0/0:5,0:5:12.02:0,12,126 0/0:5,0:5:15.05:0,15,209 0/1:1,5:6:0.26:135,12,0 0/0:2,0:2:6.02:0,6,76 0/1:4,5:9:98.58:147,0,99 0/0:2,0:2:6.02:0,6,66 0/0:5,0:5:15.05:0,15,184 0/0:8,0:8:21.07:0,21,273 0/0:16,0:16:42.10:0,42,486 0/0:3,0:3:9.03:0,9,109 0/0:4,0:4:12.02:0,12,123 ./. 0/0:3,0:3:6.01:0,6,66 0/0:7,0:7:15.05:0,15,199 0/0:6,0:6:18.06:0,18,223 0/0:5,0:5:12.04:0,12,156 0/0:12,0:12:33.11:0,33,424 0/0:3,0:3:9.03:0,9,122 0/0:11,0:11:33.09:0,33,396 0/0:6,0:6:18.05:0,18,226 0/0:2,0:2:6.02:0,6,74 0/0:3,0:3:9.02:0,9,92 0/0:6,0:6:18.05:0,18,213 0/0:5,0:5:15.04:0,15,176 0/0:3,0:3:9.03:0,9,111 0/0:6,0:6:18.04:0,18,208 0/0:3,0:3:9.03:0,9,113 0/0:5,0:5:12.04:0,12,146 0/0:5,0:5:15.04:0,15,178 0/0:4,0:4:12.02:0,12,121 0/0:7,0:7:21.06:0,21,253 0/0:2,0:2:3.01:0,3,36 ./. 0/0:5,0:5:15.04:0,15,182 0/0:3,0:3:9.03:0,9,104 0/0:5,0:5:15.05:0,15,191 16 67208109 . G C 8.90 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.536;DP=823;Dels=0.00;FS=6.564;HRun=1;HaplotypeScore=0.8399;InbreedingCoeff=-0.0140;MQ=58.65;MQ0=0;MQRankSum=0.057;QD=0.89;ReadPosRankSum=-1.416 GT:AD:DP:GQ:PL 0/0:21,0:21:57.16:0,57,688 0/0:14,0:14:39.04:0,39,406 0/0:10,0:10:24.07:0,24,279 0/0:40,1:41:99:0,99,1190 0/0:30,1:31:72.22:0,72,922 0/0:29,0:29:66.19:0,66,848 0/0:20,0:20:51.15:0,51,638 0/0:26,0:26:78.21:0,78,955 0/0:14,0:14:39.11:0,39,446 0/0:16,0:16:48.14:0,48,568 0/0:13,1:14:9.40:0,9,349 0/0:6,0:6:18.04:0,18,196 0/0:9,0:9:21.05:0,21,246 0/0:14,0:14:36.10:0,36,422 0/0:45,0:45:99:0,108,1279 0/0:19,0:19:51.12:0,51,573 0/0:14,0:14:36.09:0,36,413 0/0:18,0:18:48.10:0,48,559 0/0:15,0:15:30.05:0,30,334 0/0:35,0:35:87.21:0,87,994 0/0:18,1:20:45.14:0,45,550 0/0:19,0:19:51.12:0,51,587 0/0:54,0:54:99:0,141,1813 0/0:25,0:25:63.15:0,63,770 0/0:40,0:40:99:0,99,1222 0/0:30,0:30:69.21:0,69,867 0/0:16,1:17:44.99:0,45,492 0/0:15,0:15:39.08:0,39,438 0/0:15,0:15:39.10:0,39,451 0/0:10,0:10:30.08:0,30,347 0/1:8,2:10:54.50:54,0,150 0/0:24,0:24:57.12:0,57,643 0/0:14,0:14:39.09:0,39,429 0/0:9,0:9:24.06:0,24,286 0/0:7,0:7:18.05:0,18,206 0/0:14,1:15:36.07:0,36,399 0/0:19,0:19:48.14:0,48,575 0/0:23,0:23:66.16:0,66,750 0/0:13,0:13:33.10:0,33,400 0/0:12,0:12:30.07:0,30,341 0/0:10,0:10:27.08:0,27,330 0/0:11,0:11:33.10:0,33,397 16 67219107 . G C 1264.16 . AC=3;AF=0.036;AN=84;BaseQRankSum=-3.512;DP=2226;Dels=0.00;FS=7.235;HRun=1;HaplotypeScore=1.7638;InbreedingCoeff=-0.0370;MQ=58.72;MQ0=0;MQRankSum=-1.000;QD=11.60;ReadPosRankSum=0.051 GT:AD:DP:GQ:PL 0/0:36,1:37:99:0,105,1280 0/0:36,0:36:99:0,102,1273 0/1:11,11:22:99:279,0,325 0/0:126,0:126:99:0,349,4617 0/0:111,0:111:99:0,325,4322 0/0:47,0:47:99:0,132,1749 0/0:72,1:73:99:0,199,2678 0/0:78,0:79:99:0,214,2839 0/0:37,0:37:96.28:0,96,1159 0/0:29,0:29:84.26:0,84,1056 0/0:24,0:24:72.22:0,72,881 0/0:41,0:41:99:0,111,1389 0/0:33,0:33:90.27:0,90,1128 0/0:40,1:41:99:0,111,1393 0/0:119,0:120:99:0,325,4054 0/0:47,0:47:99:0,132,1630 0/0:35,0:35:99:0,105,1302 0/0:40,0:40:99:0,111,1390 0/0:61,0:61:99:0,177,2164 0/0:61,0:61:99:0,159,2000 0/0:74,0:74:99:0,208,2631 0/0:61,0:61:99:0,160,2032 0/0:123,1:124:99:0,332,4645 0/0:65,0:65:99:0,178,2368 0/0:85,0:85:99:0,241,3240 0/0:58,1:59:99:0,156,2062 0/0:24,0:24:69.19:0,69,822 0/0:39,0:39:99:0,108,1360 0/0:36,0:36:84.26:0,84,1079 0/0:35,0:35:93.29:0,93,1180 0/0:46,0:46:99:0,129,1584 0/0:94,0:94:99:0,271,3344 0/0:59,0:59:99:0,165,2063 0/0:24,0:24:66.21:0,66,832 0/0:28,0:28:78.25:0,78,994 0/0:33,0:33:96.27:0,96,1162 0/1:30,29:59:99:779,0,857 0/0:38,0:38:99:0,108,1337 0/1:18,10:28:99:282,0,595 0/0:38,0:38:99:0,105,1302 0/0:40,0:40:99:0,117,1445 0/0:37,0:37:99:0,102,1223 16 67222629 . C G 381.66 . 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A T 903.02 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.842;DP=1345;Dels=0.00;FS=0.636;HRun=1;HaplotypeScore=1.0185;InbreedingCoeff=-0.0244;MQ=58.89;MQ0=0;MQRankSum=-1.014;QD=14.56;ReadPosRankSum=1.137 GT:AD:DP:GQ:PL 0/0:23,0:23:63.17:0,63,740 0/0:24,0:24:66.20:0,66,783 0/0:23,0:23:66.18:0,66,754 0/0:61,0:61:99:0,174,2016 0/0:37,0:37:99:0,105,1230 0/0:28,0:28:78.24:0,78,960 0/0:33,0:33:93.27:0,93,1100 0/0:30,0:30:90.26:0,90,1049 0/0:31,0:31:81.24:0,81,969 0/0:18,0:18:45.13:0,45,529 0/0:23,0:23:66.19:0,66,774 0/0:31,1:32:87.24:0,87,1020 0/0:30,0:30:78.23:0,78,938 0/0:27,0:27:78.23:0,78,910 0/0:100,0:101:99:0,262,3117 0/0:43,0:43:99:0,114,1348 0/0:34,0:34:87.27:0,87,1057 0/0:27,0:27:81.23:0,81,925 0/0:36,0:36:93.28:0,93,1128 0/0:57,0:57:99:0,147,1808 0/0:43,0:43:99:0,120,1435 0/0:22,0:22:60.16:0,60,684 0/0:50,0:50:99:0,141,1627 0/0:12,0:12:27.08:0,27,340 0/0:46,0:46:99:0,114,1382 0/0:17,0:17:45.13:0,45,523 0/0:19,0:19:54.15:0,54,630 0/0:27,0:27:78.23:0,78,927 0/0:27,0:27:78.21:0,78,890 0/0:22,0:22:63.18:0,63,730 0/0:23,0:23:57.16:0,57,680 0/0:36,0:36:90.26:0,90,1091 0/0:36,0:36:96.28:0,96,1138 0/0:26,0:26:75.21:0,75,862 0/0:24,0:24:72.21:0,72,846 0/0:30,0:30:84.24:0,84,988 0/1:13,19:32:99:537,0,355 0/1:14,16:30:99:429,0,400 0/0:20,0:20:60.18:0,60,703 0/0:34,0:34:93.27:0,93,1102 0/0:27,0:27:72.22:0,72,874 0/0:24,0:24:66.20:0,66,807 16 67234134 . A G 998.64 . 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T C 1591.22 . 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C T 717.52 . 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G C 3150.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=-10.853;DP=5596;DS;Dels=0.00;FS=3.627;HRun=2;HaplotypeScore=6.0865;InbreedingCoeff=-0.0244;MQ=59.26;MQ0=0;MQRankSum=1.625;QD=12.03;ReadPosRankSum=1.568 GT:AD:DP:GQ:PL 0/0:92,0:92:99:0,256,3216 0/0:85,0:85:99:0,229,2917 0/0:92,0:92:99:0,250,3172 0/0:249,0:249:99:0,662,8896 0/0:236,0:236:99:0,626,8535 0/0:183,0:183:99:0,488,6549 0/0:132,0:132:99:0,358,4831 0/0:180,0:180:99:0,479,6439 0/0:104,0:104:99:0,289,3652 0/0:82,0:82:99:0,214,2697 0/0:111,0:111:99:0,304,3860 0/0:82,0:83:99:0,232,2899 0/0:84,0:84:99:0,214,2729 0/0:110,0:110:99:0,295,3744 0/0:248,1:249:99:0,659,8389 0/0:126,0:126:99:0,346,4372 0/0:118,0:118:99:0,319,4052 0/0:94,0:94:99:0,256,3255 0/0:187,0:188:99:0,527,6611 0/0:189,0:189:99:0,503,6407 0/0:215,0:215:99:0,566,7232 0/0:119,0:121:99:0,307,3901 0/0:240,0:240:99:0,599,8243 0/0:179,0:179:99:0,479,6459 0/0:183,0:183:99:0,464,6343 0/0:135,0:135:99:0,337,4563 0/0:78,0:78:99:0,220,2798 0/0:107,0:107:99:0,295,3715 0/0:84,0:84:99:0,238,2983 0/0:110,0:112:99:0,289,3642 0/0:91,0:91:99:0,250,3119 0/0:192,0:192:99:0,494,6319 0/0:117,0:117:99:0,310,3935 0/0:85,0:85:99:0,229,2897 0/0:98,0:98:99:0,280,3513 0/0:100,0:100:99:0,280,3559 0/1:86,80:167:99:2044,0,2497 0/0:111,0:111:99:0,304,3772 0/1:55,40:95:99:1170,0,1603 0/0:93,0:93:99:0,268,3351 0/0:88,0:88:99:0,244,3096 0/0:118,0:118:99:0,319,4005 16 67670682 . C T 802.62 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.952;DP=5711;DS;Dels=0.00;FS=9.319;HRun=0;HaplotypeScore=4.5139;InbreedingCoeff=-0.0120;MQ=59.26;MQ0=1;MQRankSum=1.313;QD=11.15;ReadPosRankSum=1.876 GT:AD:DP:GQ:PL 0/0:94,0:94:99:0,244,3032 0/0:90,0:90:99:0,256,3133 0/0:83,0:83:99:0,235,2831 0/0:249,0:250:99:0,671,8644 0/0:250,0:250:99:0,686,8850 0/0:246,0:246:99:0,683,8873 0/0:236,1:237:99:0,635,8687 0/0:249,0:249:99:0,677,8921 0/0:96,0:96:99:0,271,3377 0/0:92,0:92:99:0,262,3230 0/0:77,0:77:99:0,214,2652 0/0:80,0:80:99:0,214,2653 0/0:72,0:72:99:0,196,2357 0/0:105,0:105:99:0,295,3682 0/0:246,0:249:99:0,674,8263 0/1:41,30:72:99:849,0,1133 0/0:92,0:92:99:0,256,3151 0/0:84,0:84:99:0,238,2944 0/0:163,0:166:99:0,445,5424 0/0:191,0:191:99:0,530,6585 0/0:161,1:164:99:0,442,5474 0/0:123,0:124:99:0,340,4160 0/0:249,0:249:99:0,680,8850 0/0:239,0:240:99:0,629,8228 0/0:249,0:250:99:0,680,8905 0/0:250,0:250:99:0,668,8784 0/0:62,0:62:99:0,162,2036 0/0:79,0:79:99:0,223,2748 0/0:71,1:72:99:0,161,2405 0/0:72,0:72:99:0,196,2416 0/0:84,0:84:99:0,235,2948 0/0:227,0:227:99:0,596,7557 0/0:117,0:117:99:0,319,3919 0/0:78,0:78:99:0,211,2615 0/0:100,1:101:99:0,270,3519 0/0:78,0:78:99:0,217,2679 0/0:148,0:148:99:0,385,4714 0/0:70,0:70:99:0,202,2471 0/0:98,0:98:99:0,283,3452 0/0:88,0:88:99:0,244,2981 0/0:78,0:78:99:0,214,2666 0/0:107,0:107:99:0,292,3654 16 67695546 . G C 80.58 . 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G A 5689.74 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.868;DP=7026;DS;Dels=0.00;FS=20.120;HRun=0;HaplotypeScore=2.8815;InbreedingCoeff=-0.0244;MQ=59.46;MQ0=0;MQRankSum=-0.100;QD=13.78;ReadPosRankSum=2.046 GT:AD:DP:GQ:PL 0/0:148,0:148:99:0,373,4828 0/0:153,0:153:99:0,382,4970 0/0:120,1:121:99:0,263,3814 0/0:241,1:242:99:0,641,8775 0/0:250,0:250:99:0,665,9013 0/1:119,101:220:99:3026,0,3697 0/1:101,92:193:99:2664,0,3233 0/0:245,0:245:99:0,632,8522 0/0:160,0:160:99:0,400,5208 0/0:147,0:147:99:0,379,4905 0/0:135,0:135:99:0,373,4748 0/0:126,0:126:99:0,325,4178 0/0:108,0:110:99:0,286,3606 0/0:146,0:146:99:0,382,4922 0/0:246,0:247:99:0,653,8254 0/0:117,0:117:99:0,331,4174 0/0:136,0:137:99:0,364,4660 0/0:121,0:121:99:0,322,4126 0/0:235,0:238:99:0,584,7512 0/0:212,0:212:99:0,551,7124 0/0:239,1:240:99:0,632,8059 0/0:167,0:167:99:0,415,5404 0/0:250,0:250:99:0,680,9195 0/0:207,0:207:99:0,539,7303 0/0:218,0:220:99:0,608,8176 0/0:227,0:227:99:0,590,7953 0/0:91,0:91:99:0,238,3081 0/0:144,0:144:99:0,352,4555 0/0:130,0:130:99:0,343,4347 0/0:134,0:134:99:0,355,4532 0/0:107,0:107:99:0,286,3637 0/0:220,0:220:99:0,575,7451 0/0:178,0:179:99:0,460,5933 0/0:134,0:134:99:0,352,4491 0/0:93,0:93:99:0,250,3199 0/0:140,0:140:99:0,355,4593 0/0:236,0:238:99:0,590,7544 0/0:135,0:135:99:0,355,4496 0/0:130,0:130:99:0,352,4492 0/0:133,0:133:99:0,355,4510 0/0:116,0:116:99:0,298,3856 0/0:123,0:123:99:0,325,4132 16 67701213 . A G 148.65 . AC=10;AF=0.119;AN=84;BaseQRankSum=-10.795;DP=778;Dels=0.00;FS=340.919;HRun=3;HaplotypeScore=0.3997;InbreedingCoeff=-0.1824;MQ=58.30;MQ0=0;MQRankSum=0.264;QD=0.48;ReadPosRankSum=-10.201 GT:AD:DP:GQ:PL 0/0:5,8:13:1.28:5,0,157 0/0:6,3:9:15.05:0,15,180 0/0:8,3:11:24.08:0,24,296 0/1:34,19:53:14.71:15,0,1058 0/1:21,23:44:62.26:62,0,661 0/0:20,8:28:5.90:0,6,671 0/1:17,14:31:9.06:9,0,519 0/1:11,15:26:40.40:40,0,369 0/0:7,3:10:21.06:0,21,254 0/0:13,5:18:36.11:0,36,434 0/0:11,4:15:30.09:0,30,361 0/0:10,6:16:30.09:0,30,372 0/0:8,1:9:24.07:0,24,292 0/0:7,5:12:1.07:6,0,236 0/1:29,14:43:18.39:18,0,893 0/0:6,9:15:18.06:0,18,222 0/0:12,3:15:5.69:0,6,411 0/0:7,2:9:21.07:0,21,264 0/0:13,3:16:36.11:0,36,435 0/0:17,9:26:17.55:0,18,498 0/1:10,9:19:23.17:23,0,297 0/1:16,9:25:21.36:21,0,486 0/1:20,12:32:61.29:61,0,633 0/0:15,12:27:5.86:0,6,410 0/0:15,9:24:24.45:0,24,548 0/0:9,8:17:24.07:0,24,299 0/0:8,2:11:21.07:0,21,257 0/0:9,4:13:27.08:0,27,334 0/1:7,3:10:7.48:7,0,232 0/0:8,5:13:22.31:0,22,256 0/0:7,5:12:1.37:0,1,233 0/0:18,2:20:51.16:0,51,634 0/0:9,7:16:2.73:1,0,268 0/0:7,3:10:18.06:0,18,222 0/0:6,4:10:18.06:0,18,227 0/0:10,5:15:10.41:0,10,352 0/1:23,5:28:9.23:9,0,622 0/0:6,1:7:18.05:0,18,212 0/0:6,3:9:15.04:0,15,170 0/0:7,6:14:21.06:0,21,241 0/0:11,0:11:33.09:0,33,383 0/0:14,2:16:42.13:0,42,532 16 67701386 . C T 250.13 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.471;DP=620;Dels=0.00;FS=10.107;HRun=1;HaplotypeScore=0.5831;InbreedingCoeff=-0.0194;MQ=57.91;MQ0=0;MQRankSum=0.825;QD=14.71;ReadPosRankSum=-1.015 GT:AD:DP:GQ:PL 0/0:16,0:16:45.14:0,45,555 0/0:6,0:6:18.02:0,18,199 0/0:13,0:13:30.09:0,30,374 0/0:24,0:24:57.17:0,57,753 0/0:38,0:38:99:0,108,1403 0/0:21,0:21:51.16:0,51,654 0/0:7,0:7:18.06:0,18,230 0/1:7,10:17:99:296,0,211 0/0:11,0:11:30.10:0,30,380 0/0:9,0:9:21.07:0,21,280 0/0:11,0:11:33.10:0,33,410 0/0:5,0:5:12.04:0,12,151 0/0:6,0:6:18.04:0,18,201 0/0:16,0:16:45.11:0,45,540 0/0:46,0:46:99:0,114,1438 0/0:17,0:17:42.10:0,42,492 0/0:12,0:12:33.10:0,33,407 0/0:7,0:7:21.07:0,21,265 0/0:27,0:28:78.22:0,78,940 0/0:32,0:32:87.25:0,87,1082 0/0:20,0:20:45.14:0,45,575 0/0:15,0:15:42.13:0,42,531 0/0:21,0:21:57.18:0,57,762 0/0:13,0:13:33.10:0,33,438 0/0:18,0:18:54.17:0,54,696 0/0:10,0:10:24.08:0,24,335 0/0:6,0:6:15.05:0,15,195 0/0:12,0:12:30.09:0,30,370 0/0:2,0:2:6.02:0,6,68 0/0:2,0:2:6.02:0,6,77 0/0:7,0:7:18.05:0,18,222 0/0:30,0:30:78.23:0,78,968 0/0:8,0:8:21.06:0,21,264 0/0:15,0:15:39.12:0,39,492 0/0:12,0:12:30.09:0,30,383 0/0:12,0:12:30.07:0,30,374 0/0:21,0:21:54.16:0,54,678 0/0:13,0:13:36.11:0,36,454 0/0:9,0:9:27.09:0,27,345 0/0:13,0:13:33.10:0,33,403 0/0:11,0:11:30.07:0,30,354 0/0:8,0:8:21.04:0,21,253 16 67765383 . T C 698.20 . 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T C 19564.24 . 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G C 32.30 . AC=2;AF=0.024;AN=84;BaseQRankSum=-12.648;DP=2197;Dels=0.00;FS=28.427;HRun=1;HaplotypeScore=2.6269;InbreedingCoeff=-0.0244;MQ=58.75;MQ0=0;MQRankSum=-0.801;QD=0.31;ReadPosRankSum=-5.023 GT:AD:DP:GQ:PL 0/0:33,3:36:54.37:0,54,884 0/0:33,3:37:69.13:0,69,782 0/0:27,2:29:33.69:0,34,708 0/0:124,6:132:99:0,278,3436 0/0:137,8:145:99:0,316,3631 0/0:87,8:95:99:0,198,2279 0/0:76,2:81:99:0,162,1980 0/0:84,2:86:99:0,198,2332 0/0:24,5:29:63.11:0,63,690 0/0:33,4:37:72.08:0,72,798 0/0:24,1:25:48.09:0,48,533 0/0:30,1:31:72.19:0,72,850 0/0:19,4:23:42.10:0,42,475 0/0:35,1:36:84.23:0,84,983 0/0:94,10:105:99:0,181,2395 0/0:35,6:42:87.16:0,87,984 0/0:35,0:35:78.16:0,78,860 0/0:23,1:24:54.09:0,54,580 0/1:47,11:58:42.71:43,0,1042 0/0:87,5:93:99:0,164,2332 0/0:42,10:52:46.94:0,47,1063 0/0:54,1:55:99:0,100,1380 0/0:133,9:143:99:0,289,3389 0/0:57,4:62:95.60:0,96,1380 0/0:71,2:75:99:0,165,1916 0/0:49,1:50:99:0,114,1390 0/0:24,4:29:34.48:0,34,634 0/0:24,4:28:40.51:0,41,729 0/0:28,1:29:64.50:0,64,901 0/0:29,4:33:57.14:0,57,660 0/0:22,3:26:56.90:0,57,611 0/0:81,5:86:99:0,192,2248 0/0:59,1:61:99:0,123,1341 0/0:27,0:27:63.15:0,63,738 0/0:27,3:30:45.49:0,45,761 0/0:37,1:39:55.70:0,56,954 0/1:31,15:46:51.97:52,0,729 0/0:24,2:26:60.15:0,60,694 0/0:27,1:28:60.14:0,60,684 0/0:33,1:34:72.14:0,72,796 0/0:24,6:30:51.11:0,51,582 0/0:28,1:29:57.01:0,57,600 16 67980969 . G C 941.78 . AC=4;AF=0.048;AN=84;BaseQRankSum=1.689;DP=720;Dels=0.00;FS=1.197;HRun=0;HaplotypeScore=0.7901;InbreedingCoeff=-0.0507;MQ=58.80;MQ0=0;MQRankSum=0.771;QD=17.44;ReadPosRankSum=0.818 GT:AD:DP:GQ:PL 0/0:23,0:23:69.21:0,69,845 0/0:16,0:16:48.15:0,48,595 0/1:4,7:11:99:198,0,119 0/0:18,0:18:45.14:0,45,583 0/0:31,0:31:90.30:0,90,1207 0/0:13,0:13:39.12:0,39,498 0/0:18,0:18:54.17:0,54,705 0/0:21,0:21:63.20:0,63,816 0/0:15,0:15:39.12:0,39,499 0/0:18,0:18:54.17:0,54,673 0/0:11,0:11:30.09:0,30,371 0/0:11,0:11:33.10:0,33,400 0/0:13,0:13:36.10:0,36,430 0/0:20,0:20:60.17:0,60,741 0/0:42,0:43:99:0,120,1471 0/0:6,0:6:15.02:0,15,180 0/0:16,0:16:45.14:0,45,579 0/0:13,0:13:33.10:0,33,397 0/0:20,0:20:54.17:0,54,664 0/0:30,0:30:87.26:0,87,1074 0/0:36,0:36:90.22:0,90,1078 0/0:16,0:16:48.10:0,48,548 0/0:15,0:15:45.15:0,45,595 0/0:11,0:11:33.11:0,33,444 0/1:5,13:18:99:440,0,143 0/0:9,0:9:27.08:0,27,334 0/0:7,0:7:21.07:0,21,268 0/0:10,0:10:27.08:0,27,333 0/0:9,0:9:24.07:0,24,302 0/0:14,0:14:42.12:0,42,520 0/0:8,0:8:24.07:0,24,286 0/0:18,0:19:54.16:0,54,669 0/0:23,0:23:69.20:0,69,840 0/1:6,6:12:99:160,0,186 0/0:16,0:16:45.14:0,45,561 0/1:6,7:13:99:231,0,187 0/0:26,0:26:72.20:0,72,884 0/0:15,0:15:45.11:0,45,515 0/0:31,0:31:93.28:0,93,1129 0/0:14,0:14:42.12:0,42,501 0/0:16,0:16:48.15:0,48,595 0/0:15,0:15:45.11:0,45,533 16 67981264 . T C 38.99 . AC=8;AF=0.095;AN=84;BaseQRankSum=-11.865;DP=751;Dels=0.00;FS=520.657;HRun=2;HaplotypeScore=0.5796;InbreedingCoeff=-0.1589;MQ=58.44;MQ0=0;MQRankSum=1.110;QD=0.41;ReadPosRankSum=-10.385 GT:AD:DP:GQ:PL 0/0:19,2:21:16.80:0,17,559 0/0:7,2:10:2.38:0,2,223 0/0:7,2:9:16.60:0,17,189 0/0:34,10:44:52.59:0,53,1119 0/0:26,10:36:46.47:0,46,893 0/1:19,3:22:7.77:8,0,543 0/0:18,5:23:2.27:2,0,573 0/0:19,6:25:24.05:0,24,667 0/0:14,0:14:39.09:0,39,447 0/0:10,4:14:29.58:0,30,337 0/1:7,3:10:35.11:35,0,191 0/0:14,4:19:4.72:0,5,375 0/0:13,7:20:5.02:0,5,338 0/1:5,3:8:18.39:18,0,138 0/0:31,4:35:54.59:0,55,956 0/1:12,3:15:23.63:24,0,395 0/0:16,2:18:21.46:0,21,525 0/0:8,0:8:15.04:0,15,179 0/0:21,3:24:36.58:0,37,751 0/0:13,9:22:17.40:0,17,388 0/0:15,6:21:13.46:0,13,441 0/1:7,2:9:15.15:15,0,187 0/0:42,11:53:49.54:0,50,1238 0/0:21,1:22:63.19:0,63,766 0/0:20,5:25:59.84:0,60,676 0/0:20,3:23:57.65:0,58,727 0/0:8,2:10:21.06:0,21,245 0/1:8,1:9:4.47:4,0,266 0/0:6,1:7:17.78:0,18,182 0/0:7,5:12:1.73:3,0,204 0/0:10,2:12:2.84:0,0,316 0/0:16,6:22:44.88:0,45,501 0/0:8,3:11:2.21:2,0,228 0/0:10,2:12:27.09:0,27,337 0/0:12,1:14:30.09:0,30,371 0/1:10,6:17:25.41:25,0,299 0/0:18,2:20:48.12:0,48,572 0/0:16,3:19:43.37:0,43,512 0/0:10,0:10:27.08:0,27,332 0/1:4,2:6:13.60:14,0,135 0/0:10,3:13:2.30:2,0,259 0/0:7,0:7:21.06:0,21,253 16 67984589 . A G 667.03 . AC=4;AF=0.048;AN=84;BaseQRankSum=1.443;DP=808;Dels=0.00;FS=2.497;HRun=0;HaplotypeScore=0.4500;InbreedingCoeff=-0.0502;MQ=58.92;MQ0=0;MQRankSum=0.313;QD=10.42;ReadPosRankSum=1.082 GT:AD:DP:GQ:PL 0/0:22,0:22:63.19:0,63,750 0/0:20,0:20:51.15:0,51,630 0/1:8,7:15:99:181,0,226 0/0:17,0:17:48.14:0,48,577 0/0:29,0:29:72.21:0,72,873 0/0:17,0:17:45.12:0,45,525 0/0:18,0:19:45.12:0,45,543 0/0:12,0:12:33.09:0,33,390 0/0:17,0:17:48.14:0,48,573 0/0:12,0:12:33.06:0,33,367 0/0:15,0:15:42.13:0,42,520 0/0:18,0:18:48.13:0,48,582 0/0:15,0:15:42.13:0,42,511 0/0:29,0:30:60.16:0,60,764 0/0:60,0:60:99:0,144,1805 0/0:19,0:19:57.16:0,57,660 0/0:17,0:17:48.12:0,48,561 0/0:14,0:14:39.11:0,39,473 0/0:33,0:33:84.26:0,84,1048 0/0:28,0:28:72.22:0,72,874 0/0:21,0:21:48.15:0,48,603 0/0:29,0:29:75.22:0,75,917 0/0:29,0:29:72.22:0,72,901 0/0:12,0:12:30.09:0,30,375 0/1:8,7:15:99:231,0,226 0/0:9,0:9:24.07:0,24,292 0/0:15,0:15:39.12:0,39,483 0/0:14,0:14:39.12:0,39,470 0/0:16,0:16:42.13:0,42,520 0/0:19,0:19:51.15:0,51,618 0/0:13,0:13:39.12:0,39,469 0/0:23,0:24:57.18:0,57,717 0/0:24,0:24:60.18:0,60,730 0/1:13,5:18:99:107,0,387 0/0:18,0:18:48.15:0,48,591 0/1:7,9:16:99:235,0,211 0/0:27,0:27:72.21:0,72,861 0/0:11,0:11:30.09:0,30,366 0/0:12,0:12:36.11:0,36,423 0/0:14,0:14:39.11:0,39,461 0/0:8,0:8:21.06:0,21,242 0/0:15,0:15:42.12:0,42,511 16 68021468 . G C 6875.83 . AC=4;AF=0.048;AN=84;BaseQRankSum=-16.107;DP=6486;DS;Dels=0.00;FS=0.827;HRun=0;HaplotypeScore=3.5865;InbreedingCoeff=-0.0500;MQ=59.41;MQ0=0;MQRankSum=0.058;QD=12.28;ReadPosRankSum=-2.895 GT:AD:DP:GQ:PL 0/0:126,0:126:99:0,361,4481 0/0:124,0:124:99:0,349,4436 0/1:61,50:111:99:1319,0,1886 0/0:236,0:236:99:0,680,9130 0/0:215,0:216:99:0,611,8161 0/0:192,0:192:99:0,554,7462 0/0:191,0:192:99:0,554,7399 0/0:190,0:191:99:0,527,7004 0/0:129,0:129:99:0,367,4616 0/0:129,0:129:99:0,352,4446 0/0:122,0:122:99:0,352,4402 0/0:124,0:124:99:0,358,4460 0/0:130,0:130:99:0,364,4521 0/0:122,0:123:99:0,346,4380 0/0:247,0:250:99:0,689,8672 0/0:125,0:125:99:0,370,4613 0/0:131,0:131:99:0,382,4771 0/0:126,0:126:99:0,370,4654 0/0:214,0:214:99:0,602,7475 0/0:205,0:206:99:0,572,7157 0/0:194,0:196:99:0,554,6905 0/0:144,0:144:99:0,400,5054 0/0:249,0:250:99:0,731,9810 0/0:154,0:154:99:0,436,5819 0/1:106,89:195:99:2470,0,3444 0/0:153,0:153:99:0,409,5492 0/0:117,0:117:99:0,340,4247 0/0:127,0:127:99:0,361,4531 0/0:126,0:126:99:0,343,4373 0/0:118,0:118:99:0,337,4173 0/0:109,0:109:99:0,301,3790 0/0:209,0:209:99:0,581,7390 0/0:147,0:147:99:0,421,5250 0/1:63,58:122:99:1474,0,1875 0/0:132,0:132:99:0,379,4757 0/1:69,63:132:99:1613,0,2152 0/0:207,1:209:99:0,569,7078 0/0:125,0:125:99:0,355,4363 0/0:149,0:149:99:0,427,5307 0/0:131,0:131:99:0,388,4827 0/0:105,0:107:99:0,298,3717 0/0:135,0:135:99:0,397,4941 16 68026063 . C T 1633.03 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.250;DP=4184;DS;Dels=0.00;FS=4.940;HRun=1;HaplotypeScore=2.5143;InbreedingCoeff=-0.0244;MQ=59.30;MQ0=0;MQRankSum=-0.112;QD=10.40;ReadPosRankSum=-1.017 GT:AD:DP:GQ:PL 0/0:87,0:87:99:0,235,2936 0/0:70,0:70:99:0,199,2482 0/1:45,23:68:99:591,0,1328 0/0:217,0:217:99:0,545,7339 0/0:181,0:181:99:0,473,6373 0/0:137,0:137:99:0,349,4637 0/0:109,0:109:99:0,292,3959 0/0:90,0:90:99:0,238,3214 0/0:62,0:62:99:0,175,2153 0/0:78,0:78:99:0,214,2631 0/0:73,0:73:99:0,202,2574 0/0:79,0:79:99:0,220,2773 0/0:86,0:86:99:0,235,2936 0/0:86,0:86:99:0,226,2867 0/0:231,0:231:99:0,599,7535 0/0:71,0:71:99:0,193,2334 0/0:87,0:87:99:0,235,2943 0/0:77,0:77:99:0,217,2715 0/0:131,0:132:99:0,361,4458 0/0:165,0:166:99:0,409,5305 0/0:149,0:149:99:0,400,4921 0/0:80,0:80:99:0,214,2728 0/0:186,0:186:99:0,469,6332 0/0:111,0:112:99:0,295,3946 0/1:49,39:89:99:1104,0,1454 0/0:108,0:108:99:0,286,3822 0/0:56,0:56:99:0,156,1945 0/0:79,0:79:99:0,217,2689 0/0:61,0:61:99:0,166,2114 0/0:78,0:78:99:0,217,2713 0/0:67,0:67:99:0,187,2338 0/0:122,0:122:99:0,325,4179 0/0:98,0:98:99:0,271,3404 0/0:77,0:77:99:0,214,2728 0/0:62,0:63:99:0,184,2249 0/0:83,0:83:99:0,232,2928 0/0:121,0:121:99:0,310,3809 0/0:94,0:94:99:0,265,3305 0/0:70,0:70:99:0,199,2480 0/0:71,0:71:99:0,199,2506 0/0:68,0:68:99:0,184,2314 0/0:64,0:65:99:0,178,2236 16 68289739 . C T 490.35 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.538;DP=2083;Dels=0.00;FS=4.491;HRun=0;HaplotypeScore=1.6215;InbreedingCoeff=-0.0120;MQ=59.02;MQ0=0;MQRankSum=-1.554;QD=11.40;ReadPosRankSum=0.378 GT:AD:DP:GQ:PL 0/0:24,0:24:63.15:0,63,701 0/0:32,0:32:84.23:0,84,961 0/0:33,0:33:81.23:0,81,956 0/0:108,0:108:99:0,283,3525 0/0:77,0:77:99:0,220,2670 0/0:63,0:63:99:0,177,2136 0/0:59,0:59:99:0,156,1957 0/0:73,0:73:99:0,205,2495 0/0:34,0:34:93.26:0,93,1088 0/0:31,0:31:90.26:0,90,1058 0/0:35,0:35:99:0,99,1125 0/0:33,0:33:84.24:0,84,980 0/0:26,0:26:63.15:0,63,722 0/0:27,0:27:75.21:0,75,863 0/0:96,0:96:99:0,250,2889 0/0:38,0:38:99:0,108,1224 0/0:36,0:36:93.26:0,93,1110 0/0:29,0:29:75.20:0,75,850 0/0:78,0:78:99:0,205,2388 0/0:74,0:74:99:0,205,2410 0/0:74,1:76:99:0,187,2233 0/0:72,0:72:99:0,192,2187 0/0:115,0:115:99:0,301,3706 0/0:53,0:53:99:0,141,1749 0/0:77,0:77:99:0,205,2527 0/0:57,0:58:99:0,150,1847 0/0:31,0:31:75.22:0,75,907 0/0:27,0:27:75.19:0,75,860 0/0:23,0:23:63.18:0,63,740 0/0:40,1:41:70.61:0,71,1078 0/0:34,0:34:84.21:0,84,961 0/0:101,0:101:99:0,256,3011 0/0:51,0:51:99:0,144,1623 0/0:34,0:34:96.27:0,96,1128 0/0:22,0:22:57.16:0,57,667 0/0:35,0:35:93.25:0,93,1073 0/0:64,0:64:99:0,171,1973 0/1:23,20:43:99:537,0,582 0/0:34,0:34:87.26:0,87,1074 0/0:29,0:29:84.18:0,84,907 0/0:25,0:25:72.18:0,72,807 0/0:32,0:32:93.25:0,93,1071 16 68289836 . G A 313.38 . 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T C 3545.86 . AC=33;AF=0.393;AN=84;BaseQRankSum=-21.823;DP=4769;DS;Dels=0.00;FS=464.187;HRun=2;HaplotypeScore=2.0876;InbreedingCoeff=-0.6430;MQ=58.12;MQ0=1;MQRankSum=-0.684;QD=0.92;ReadPosRankSum=-13.577 GT:AD:DP:GQ:PL 0/1:33,51:85:69.68:70,0,777 0/1:37,49:86:99:134,0,794 0/1:40,34:74:54.82:55,0,1177 0/1:67,162:229:99:462,0,1502 0/1:45,170:215:99:354,0,1075 0/1:54,103:157:99:106,0,1234 0/1:85,89:174:7.70:8,0,1920 0/1:59,98:158:11.77:12,0,1156 0/1:46,51:97:18.81:19,0,1111 0/1:42,45:87:99:99,0,1051 0/1:33,46:79:5.69:6,0,717 0/1:29,38:67:99:110,0,607 0/0:26,33:59:5.17:0,5,672 0/1:40,40:80:45.24:45,0,1068 0/1:73,122:195:99:161,0,1652 0/1:36,46:82:99:127,0,987 0/1:50,58:108:40.41:40,0,1202 0/0:26,31:58:11.96:0,12,677 0/1:58,53:111:99:140,0,1213 0/0:81,70:151:22.74:0,23,1606 0/1:66,59:127:87.09:87,0,1778 0/0:63,44:107:99:0,135,1471 0/1:60,179:239:99:355,0,1354 0/1:78,85:163:31.03:31,0,1708 0/1:53,121:175:99:157,0,785 0/0:61,97:158:75:0,75,1331 0/0:42,22:64:39.20:0,39,1021 0/1:49,43:92:49.04:49,0,1142 0/1:34,42:76:44.25:44,0,921 0/1:35,47:82:63.37:63,0,928 0/1:38,46:84:37.67:38,0,954 0/0:80,64:144:76.44:0,76,1617 0/1:52,66:118:99:164,0,1225 0/1:31,44:75:49.05:49,0,648 0/1:24,41:65:98.15:98,0,597 0/0:43,47:90:21.01:0,21,1137 0/1:68,63:131:99:125,0,1703 0/1:56,40:98:99:136,0,1320 0/0:48,43:91:26.95:0,27,1135 0/1:37,50:87:26.95:27,0,875 0/1:33,37:71:80.78:81,0,877 0/1:38,42:80:95.07:95,0,874 16 68387457 . C T 8884.71 . 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C T 516.32 . AC=5;AF=0.060;AN=84;BaseQRankSum=3.874;DP=448;Dels=0.00;FS=8.141;HRun=0;HaplotypeScore=0.3537;InbreedingCoeff=-0.0711;MQ=58.84;MQ0=0;MQRankSum=0.186;QD=10.76;ReadPosRankSum=0.956 GT:AD:DP:GQ:PL 0/1:5,4:9:99:107,0,136 0/1:3,4:7:77.48:93,0,77 0/0:5,0:5:12.04:0,12,149 0/0:30,0:30:84.24:0,84,995 0/0:22,0:22:66.19:0,66,776 0/0:16,0:16:45.11:0,45,532 0/0:9,0:9:27.08:0,27,330 0/0:10,0:10:30.09:0,30,365 0/0:2,0:2:6.02:0,6,69 0/0:9,0:9:24.06:0,24,279 0/0:9,0:9:24.04:0,24,243 0/0:12,0:12:30.07:0,30,341 0/0:11,0:11:33.08:0,33,362 0/0:10,0:10:21.07:0,21,274 0/0:21,0:21:57.14:0,57,622 0/0:4,0:4:9.02:0,9,96 0/0:7,0:7:21.05:0,21,224 0/0:6,0:6:18.05:0,18,212 0/0:17,0:17:45.12:0,45,521 0/0:15,0:15:45.12:0,45,493 0/0:8,0:8:24.05:0,24,260 0/0:4,0:4:12.03:0,12,125 0/0:26,0:26:75.20:0,75,862 0/0:11,0:11:30.08:0,30,351 0/1:11,6:17:99:116,0,294 0/0:17,0:17:48.13:0,48,569 0/0:6,0:6:18.05:0,18,202 0/0:9,0:10:27.07:0,27,301 0/0:5,0:5:15.04:0,15,161 0/0:9,0:9:24.06:0,24,259 0/0:7,0:7:21.06:0,21,238 0/0:9,0:9:21.06:0,21,242 0/0:12,0:12:30.05:0,30,314 0/1:2,3:5:57.10:97,0,57 0/0:9,0:9:24.07:0,24,282 0/1:3,7:10:52.24:200,0,52 0/0:11,0:11:33.09:0,33,370 0/0:6,0:6:18.04:0,18,190 0/0:10,0:10:27.06:0,27,296 0/0:9,0:9:24.04:0,24,268 0/0:8,0:8:24.07:0,24,278 0/0:8,0:8:24.07:0,24,274 16 68395522 . C T 4357.04 . AC=5;AF=0.060;AN=84;BaseQRankSum=-14.225;DP=3507;Dels=0.00;FS=4.834;HRun=0;HaplotypeScore=3.4684;InbreedingCoeff=-0.0633;MQ=58.77;MQ0=0;MQRankSum=2.409;QD=12.97;ReadPosRankSum=1.043 GT:AD:DP:GQ:PL 0/1:27,38:65:99:903,0,740 0/1:19,28:47:99:804,0,458 0/0:36,0:36:99:0,105,1308 0/0:230,0:230:99:0,617,8105 0/0:178,0:178:99:0,484,6341 0/0:131,0:132:99:0,316,4148 0/0:111,0:111:99:0,271,3490 0/0:114,0:114:99:0,286,3752 0/0:49,0:49:99:0,132,1622 0/0:53,0:53:99:0,138,1693 0/0:43,0:43:99:0,117,1465 0/0:49,0:50:99:0,132,1586 0/0:40,0:40:99:0,108,1337 0/0:59,0:59:99:0,156,1944 0/0:173,0:173:99:0,433,5369 0/0:56,0:56:99:0,150,1849 0/0:54,0:54:99:0,147,1813 0/0:55,0:55:99:0,141,1729 0/0:116,0:116:99:0,307,3735 0/0:138,0:139:99:0,340,4274 0/0:121,1:122:99:0,304,3695 0/0:83,0:83:99:0,202,2484 0/0:216,0:216:99:0,584,7662 0/0:115,1:116:99:0,289,3786 0/1:65,65:132:99:1582,0,1916 0/0:117,0:117:99:0,316,4105 0/0:46,0:46:99:0,129,1566 0/0:38,0:38:99:0,111,1376 0/0:52,0:52:99:0,144,1779 0/0:44,0:44:99:0,114,1432 0/0:54,0:54:99:0,150,1886 0/0:105,0:106:99:0,277,3452 0/0:79,0:79:99:0,205,2531 0/1:27,14:41:99:361,0,849 0/0:49,0:49:99:0,144,1726 0/1:23,28:51:99:708,0,720 0/0:115,0:116:99:0,277,3434 0/0:45,0:45:99:0,117,1501 0/0:49,0:49:99:0,138,1714 0/0:53,0:53:99:0,144,1798 0/0:53,0:54:99:0,135,1711 0/0:44,0:44:99:0,129,1573 16 69279622 . C T 3458.12 . AC=1;AF=0.012;AN=84;BaseQRankSum=5.324;DP=9385;DS;Dels=0.00;FS=0.694;HRun=2;HaplotypeScore=6.8755;InbreedingCoeff=-0.0120;MQ=59.52;MQ0=1;MQRankSum=-0.313;QD=14.41;ReadPosRankSum=0.683 GT:AD:DP:GQ:PL 0/0:213,0:213:99:0,596,6690 0/0:237,2:239:99:0,656,7420 0/0:204,0:204:99:0,550,6281 0/0:249,1:250:99:0,689,8313 0/0:237,0:238:99:0,674,8091 0/0:243,0:243:99:0,665,8083 0/0:236,0:236:99:0,650,7880 0/0:245,1:246:99:0,698,8367 0/0:227,0:228:99:0,626,7056 0/0:209,0:209:99:0,586,6461 0/0:201,0:201:99:0,568,6327 0/0:201,0:202:99:0,553,6288 0/0:181,0:181:99:0,505,5700 0/0:214,1:215:99:0,583,6573 0/0:249,1:250:99:0,689,7644 0/0:175,0:175:99:0,496,5648 0/0:244,0:244:99:0,674,7507 0/0:195,0:195:99:0,559,6267 0/0:249,0:250:99:0,695,7766 0/0:250,0:250:99:0,689,7871 0/0:246,1:250:99:0,653,7541 0/0:236,0:236:99:0,662,7447 0/0:250,0:250:99:0,710,8578 0/0:206,0:207:99:0,566,6893 0/0:249,1:250:99:0,644,8319 0/0:228,0:229:99:0,632,7734 0/0:171,1:172:99:0,463,5224 0/0:201,1:202:99:0,559,6094 0/0:229,1:230:99:0,651,7306 0/0:203,0:203:99:0,565,6395 0/0:180,0:181:99:0,502,5625 0/0:250,0:250:99:0,710,8068 0/0:250,0:250:99:0,686,7738 0/0:207,3:210:99:0,581,6572 0/0:199,0:200:99:0,544,6169 0/1:119,121:240:99:3458,0,3067 0/0:247,1:250:99:0,677,7571 0/0:216,1:217:99:0,608,6790 0/0:220,1:221:99:0,602,6746 0/0:246,2:249:99:0,689,7742 0/0:196,0:196:99:0,550,6135 0/0:222,0:222:99:0,620,6927 16 69304048 . A G 4657.04 . AC=3;AF=0.036;AN=84;BaseQRankSum=-10.386;DP=7155;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.5661;InbreedingCoeff=-0.0370;MQ=59.60;MQ0=0;MQRankSum=-0.442;QD=11.73;ReadPosRankSum=-2.519 GT:AD:DP:GQ:PL 0/1:78,67:145:99:1743,0,2201 0/1:80,68:149:99:1684,0,2222 0/0:137,0:137:99:0,376,4651 0/0:250,0:250:99:0,686,8602 0/0:249,1:250:99:0,630,8447 0/0:249,1:250:99:0,668,8688 0/0:250,0:250:99:0,656,8469 0/0:250,0:250:99:0,656,8358 0/0:160,0:160:99:0,433,5315 0/0:131,0:131:99:0,352,4334 0/0:141,0:141:99:0,373,4646 0/0:165,0:165:99:0,457,5607 0/0:125,0:125:99:0,343,4233 0/0:141,0:141:99:0,391,4883 0/0:250,0:250:99:0,680,8308 0/0:102,0:102:99:0,289,3555 0/0:151,0:151:99:0,400,5010 0/0:147,0:147:99:0,412,5037 0/0:208,0:208:99:0,536,6736 0/0:232,0:232:99:0,602,7540 0/0:180,0:180:99:0,481,5986 0/0:132,1:133:99:0,358,4401 0/0:250,0:250:99:0,659,8360 0/0:248,0:248:99:0,632,8133 0/0:248,0:248:99:0,638,8160 0/0:239,0:240:99:0,620,7910 0/0:115,0:115:99:0,310,3864 0/0:130,0:130:99:0,358,4398 0/0:118,0:118:99:0,319,3974 0/0:131,0:131:99:0,364,4518 0/1:57,46:103:99:1230,0,1723 0/0:192,0:192:99:0,482,6152 0/0:130,0:130:99:0,331,4180 0/0:136,0:136:99:0,358,4465 0/0:139,0:139:99:0,388,4789 0/0:153,0:153:99:0,412,5115 0/0:152,0:152:99:0,397,4953 0/0:145,0:145:99:0,388,4784 0/0:147,0:147:99:0,406,4999 0/0:147,1:148:99:0,387,5086 0/0:121,0:121:99:0,337,4166 0/0:162,0:162:99:0,436,5429 16 69354049 . T G 113.47 . AC=12;AF=0.143;AN=84;BaseQRankSum=-11.306;DP=952;Dels=0.00;FS=155.995;HRun=2;HaplotypeScore=0.7823;InbreedingCoeff=-0.2180;MQ=58.47;MQ0=0;MQRankSum=1.437;QD=0.42;ReadPosRankSum=-5.284 GT:AD:DP:GQ:PL 0/1:13,13:26:47.73:48,0,343 0/0:9,6:15:24.06:0,24,273 0/1:9,12:22:7.27:7,0,264 0/1:14,21:35:5.23:5,0,421 0/0:18,14:32:45.12:0,45,518 0/0:11,13:24:6.44:0,6,322 0/0:13,8:21:2.42:1,0,304 0/0:13,11:25:30.08:0,30,358 0/0:12,9:21:33.09:0,33,369 0/1:8,3:11:14.19:14,0,193 0/1:7,8:15:5.65:6,0,171 0/0:9,9:19:27.06:0,27,298 0/0:7,5:12:18.03:0,18,195 0/0:17,14:31:24.33:0,24,462 0/1:37,36:73:12.36:12,0,1064 0/0:10,7:17:0.60:0,1,326 0/0:10,10:20:0.47:0,0,302 0/0:4,9:13:12.03:0,12,138 0/0:22,13:35:31.80:0,32,682 0/0:28,17:45:30.84:0,31,830 0/0:16,6:22:42.11:0,42,476 0/0:11,15:26:33.08:0,33,375 0/0:14,21:35:15.51:0,16,473 0/1:6,8:14:20.70:21,0,194 0/0:11,7:18:24.05:0,24,266 0/0:11,7:18:33.10:0,33,390 0/1:8,8:16:30.20:30,0,214 0/0:12,8:20:33.09:0,33,390 0/1:6,7:13:17.20:17,0,164 0/1:6,10:16:21.10:21,0,164 0/0:9,12:22:1.57:4,0,221 0/0:32,12:44:78.17:0,78,888 0/0:15,7:22:3.59:0,4,356 0/0:8,9:17:1.30:5,0,220 0/1:5,9:14:47.22:47,0,107 0/0:10,6:16:27.07:0,27,313 0/0:16,5:21:42.13:0,42,504 0/0:10,6:16:30.09:0,30,355 0/1:8,10:18:6.64:7,0,158 0/0:10,12:23:2.50:0,2,318 0/0:7,4:12:18.05:0,18,202 0/0:9,8:17:24.07:0,24,287 16 69366732 . G A 1888.55 . 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A C 10487.82 . 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A G 2847.01 . 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A G 3784.64 . 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C T 22776.16 . AC=50;AF=0.595;AN=84;BaseQRankSum=-2.309;DP=1014;Dels=0.00;FS=0.307;HRun=0;HaplotypeScore=0.6223;InbreedingCoeff=0.0105;MQ=55.16;MQ0=0;MQRankSum=-0.015;QD=25.82;ReadPosRankSum=0.118 GT:AD:DP:GQ:PL 0/0:16,1:18:17.73:0,18,573 0/1:16,12:28:99:344,0,472 1/1:0,23:23:63.17:753,63,0 1/1:0,32:32:96.30:1210,96,0 1/1:0,33:33:96.30:1219,96,0 1/1:0,25:25:75.24:968,75,0 0/1:17,17:34:99:538,0,536 0/1:14,11:25:99:287,0,477 1/1:0,28:28:84.24:1004,84,0 0/1:4,9:13:99:288,0,108 0/1:9,12:21:99:386,0,271 0/0:14,0:14:39.12:0,39,481 0/0:8,0:8:24.07:0,24,275 0/1:11,13:24:99:398,0,278 1/1:1,98:99:99:3259,271,0 1/1:0,21:21:60.19:741,60,0 1/1:0,16:16:45.13:546,45,0 0/1:11,13:24:99:413,0,347 1/1:0,31:31:93.28:1138,93,0 1/1:0,28:28:84.25:1028,84,0 0/1:14,14:28:99:388,0,356 0/1:14,7:21:99:192,0,452 1/1:0,35:35:99:1331,105,0 0/0:25,0:25:72.21:0,72,906 0/1:10,11:21:99:365,0,296 0/0:22,0:22:66.17:0,66,838 0/1:5,8:13:99:266,0,141 0/0:14,0:14:42.11:0,42,488 0/1:8,7:15:99:219,0,242 0/1:14,16:30:99:441,0,419 0/1:9,8:17:99:249,0,278 0/0:31,0:31:84.25:0,84,1036 0/1:11,13:24:99:411,0,324 1/1:0,29:29:87.26:1059,87,0 0/1:2,4:6:59.66:95,0,60 1/1:0,14:14:42.12:502,42,0 0/1:16,15:31:99:467,0,450 1/1:0,25:25:75.23:923,75,0 0/1:11,8:19:99:243,0,321 0/1:8,4:12:97.56:98,0,258 1/1:0,16:16:48.15:596,48,0 0/1:8,13:21:99:412,0,190 16 69971115 . C G 10.83 . 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G A 11376.96 . 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G A 691.73 . 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C T 829.71 . AC=8;AF=0.095;AN=84;BaseQRankSum=9.091;DP=2826;Dels=0.00;FS=101.329;HRun=0;HaplotypeScore=1.7164;InbreedingCoeff=-0.1120;MQ=14.94;MQ0=1352;MQRankSum=-6.592;QD=1.02;ReadPosRankSum=10.092 GT:AD:DP:GQ:PL 0/0:33,0:33:21.02:0,21,196 0/0:38,0:38:30.01:0,30,272 0/0:43,0:43:15:0,15,133 0/1:68,55:123:99:203,0,274 0/0:86,0:86:72.07:0,72,689 0/0:92,0:92:96.08:0,96,895 0/0:90,0:90:78.07:0,78,738 0/0:60,0:60:60.04:0,60,554 0/0:47,0:47:36.01:0,36,324 0/0:41,0:41:33.03:0,33,312 0/0:24,0:24:27.02:0,27,254 0/0:57,0:57:63.05:0,63,587 0/0:29,0:29:18.01:0,18,163 0/1:56,14:70:89.64:90,0,302 0/1:172,28:200:99:101,0,940 0/0:35,0:35:30.02:0,30,280 0/0:52,17:69:2.93:0,3,457 0/0:24,0:25:36.02:0,36,324 0/1:142,18:162:73.58:74,0,1050 0/0:176,36:213:99:0,105,1645 0/0:74,0:75:48.04:0,48,456 0/0:89,0:89:72.03:0,72,658 0/1:69,53:122:99:277,0,408 0/0:43,0:43:30.03:0,30,283 0/0:76,0:77:42.03:0,42,388 0/0:57,0:57:48.02:0,48,434 0/0:33,0:33:36.03:0,36,334 0/0:42,0:42:45.02:0,45,414 0/1:25,12:37:45.10:45,0,65 0/1:35,15:50:56.01:56,0,115 0/1:28,25:53:99:105,0,225 0/0:88,0:88:90.07:0,90,836 0/0:66,0:66:66.05:0,66,608 0/0:51,0:51:54.03:0,54,495 0/0:51,0:51:57.04:0,57,530 0/0:38,0:38:24.01:0,24,213 0/0:78,0:78:54.05:0,54,507 0/0:47,0:47:54.03:0,54,492 0/0:55,0:55:57.06:0,57,544 0/0:47,0:47:54.03:0,54,491 0/0:52,6:58:42.02:0,42,380 0/0:32,0:32:12.01:0,12,113 16 70180088 . A T 7204.22 . AC=9;AF=0.107;AN=84;BaseQRankSum=18.435;DP=7072;DS;Dels=0.00;FS=108.356;HRun=1;HaplotypeScore=2.1513;InbreedingCoeff=-0.1200;MQ=24.83;MQ0=2233;MQRankSum=1.705;QD=4.96;ReadPosRankSum=-0.259 GT:AD:DP:GQ:PL 0/0:113,0:113:99:0,165,1667 0/0:118,0:118:99:0,147,1480 0/0:160,0:160:99:0,198,2024 0/0:232,0:234:99:0,358,3653 0/0:240,0:240:99:0,469,4696 0/0:232,1:233:99:0,286,3010 0/1:151,58:209:99:1034,0,1960 0/0:228,0:228:99:0,270,2792 0/0:139,0:139:99:0,171,1775 0/0:115,0:115:99:0,150,1517 0/0:109,0:109:99:0,144,1413 0/0:141,0:142:99:0,162,1664 0/0:97,0:97:99:0,147,1494 0/0:128,0:128:99:0,171,1743 0/0:249,0:249:99:0,379,3928 0/0:112,0:112:99:0,141,1421 0/1:162,43:206:99:561,0,1363 0/0:114,0:114:99:0,171,1734 0/0:184,1:186:99:0,237,2484 0/0:238,0:238:99:0,312,3222 0/0:213,0:213:99:0,334,3447 0/0:178,0:178:99:0,186,1911 0/0:219,2:221:99:0,358,3631 0/0:235,1:236:99:0,358,3635 0/0:237,0:237:99:0,409,4077 0/0:248,0:248:99:0,391,3904 0/0:130,0:130:99:0,198,1986 0/0:104,0:104:99:0,111,1209 0/0:168,0:168:99:0,228,2253 0/1:70,50:120:99:825,0,600 0/1:86,39:125:99:579,0,843 0/1:187,63:250:99:1003,0,2984 0/0:143,0:143:99:0,171,1710 0/0:153,0:154:99:0,228,2301 0/0:125,0:125:99:0,129,1270 0/0:191,0:191:99:0,258,2618 0/1:97,69:166:99:1069,0,845 0/0:191,0:191:99:0,270,2741 0/1:80,46:126:99:639,0,648 0/1:84,49:133:99:791,0,621 0/0:124,1:125:99:0,103,1243 0/1:78,40:118:99:702,0,592 16 70286631 . T A 2430.07 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.467;DP=3561;Dels=0.00;FS=3.919;HRun=0;HaplotypeScore=2.1342;InbreedingCoeff=-0.0244;MQ=59.20;MQ0=0;MQRankSum=0.522;QD=14.05;ReadPosRankSum=-1.485 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,166,2068 0/0:56,0:56:99:0,150,1909 0/0:40,0:40:99:0,111,1383 0/0:215,0:216:99:0,581,7459 0/0:195,0:195:99:0,524,6798 0/0:132,0:132:99:0,340,4505 0/0:109,0:109:99:0,286,3733 0/0:120,0:121:99:0,334,4296 0/0:58,0:58:99:0,160,2012 0/0:50,0:50:99:0,144,1788 0/0:59,0:59:99:0,172,2105 0/0:52,0:52:99:0,138,1750 0/0:40,0:40:99:0,111,1349 0/0:59,0:59:99:0,172,2137 0/0:216,0:217:99:0,599,7468 0/0:66,0:66:99:0,193,2385 0/0:52,0:52:99:0,147,1789 0/1:25,40:65:99:1239,0,738 0/1:62,46:108:99:1253,0,1904 0/0:127,0:127:99:0,355,4408 0/0:100,0:100:99:0,277,3464 0/0:72,0:73:99:0,196,2477 0/0:188,0:188:99:0,539,6845 0/0:78,0:78:99:0,217,2788 0/0:137,0:137:99:0,367,4762 0/0:118,0:118:99:0,301,3965 0/0:48,0:48:99:0,132,1642 0/0:51,0:51:99:0,141,1756 0/0:43,0:43:99:0,126,1567 0/0:44,0:44:99:0,129,1565 0/0:54,0:54:99:0,150,1905 0/0:133,0:134:99:0,349,4438 0/0:85,0:85:99:0,238,2891 0/0:65,0:65:99:0,184,2297 0/0:55,0:55:99:0,153,1901 0/0:57,0:57:99:0,159,1974 0/0:73,0:73:99:0,199,2472 0/0:49,0:49:99:0,141,1752 0/0:61,0:61:99:0,181,2241 0/0:58,0:58:99:0,153,1974 0/0:42,0:42:99:0,126,1541 0/0:68,0:68:99:0,187,2327 16 70286740 . C T 2186.11 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.901;DP=4881;DS;Dels=0.00;FS=2.496;HRun=3;HaplotypeScore=4.7410;InbreedingCoeff=-0.0244;MQ=59.25;MQ0=0;MQRankSum=-0.957;QD=14.29;ReadPosRankSum=-0.029 GT:AD:DP:GQ:PL 0/1:39,45:84:99:1224,0,1087 0/1:32,35:69:99:1024,0,823 0/0:69,0:69:99:0,172,2173 0/0:200,0:200:99:0,533,6992 0/0:195,0:195:99:0,533,7018 0/0:152,1:153:99:0,412,5465 0/0:134,0:134:99:0,346,4467 0/0:137,0:137:99:0,364,4761 0/0:90,0:90:99:0,238,2990 0/0:76,0:77:99:0,205,2559 0/0:82,0:82:99:0,223,2749 0/0:68,0:68:99:0,184,2306 0/0:71,0:71:99:0,187,2322 0/0:87,0:87:99:0,241,3004 0/0:250,0:250:99:0,689,8560 0/0:103,0:103:99:0,289,3593 0/0:77,0:77:99:0,217,2706 0/0:80,0:80:99:0,217,2685 0/0:178,0:178:99:0,493,6129 0/0:207,1:208:99:0,527,6639 0/0:152,1:154:99:0,427,5248 0/0:109,0:109:99:0,289,3651 0/0:235,0:235:99:0,614,8130 0/0:121,0:121:99:0,325,4286 0/0:150,0:150:99:0,403,5295 0/0:112,0:112:99:0,304,4018 0/0:59,0:59:99:0,166,2072 0/0:75,0:75:99:0,208,2535 0/0:90,0:90:99:0,244,3039 0/0:84,0:84:99:0,232,2896 0/0:111,0:111:99:0,292,3674 0/0:203,1:205:99:0,539,6882 0/0:150,0:150:99:0,385,4910 0/0:75,0:75:99:0,211,2645 0/0:83,0:83:99:0,226,2834 0/0:86,0:86:99:0,241,3055 0/0:134,0:136:99:0,346,4298 0/0:100,0:100:99:0,268,3332 0/0:79,0:79:99:0,220,2681 0/0:73,0:73:99:0,208,2576 0/0:80,0:80:99:0,220,2713 0/0:102,0:102:99:0,283,3491 16 70305755 . G A 1005.65 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.774;DP=3370;Dels=0.00;FS=3.900;HRun=0;HaplotypeScore=2.4351;InbreedingCoeff=-0.0120;MQ=59.33;MQ0=0;MQRankSum=1.031;QD=13.78;ReadPosRankSum=-0.602 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,156,1824 0/0:49,0:49:99:0,132,1528 0/0:68,0:68:99:0,174,2058 0/0:158,0:158:99:0,430,5303 0/0:123,0:123:99:0,343,4231 0/0:101,0:101:99:0,277,3409 0/0:84,0:84:99:0,232,2825 0/0:86,0:86:99:0,238,2897 0/0:61,0:61:99:0,165,1963 0/0:64,0:64:99:0,174,2005 0/0:62,0:62:99:0,177,2068 0/0:44,0:44:99:0,117,1345 0/0:50,0:50:99:0,138,1589 0/0:57,0:57:99:0,159,1891 0/0:250,0:250:99:0,614,7369 0/0:72,0:72:99:0,202,2337 0/0:65,0:65:99:0,180,2049 0/0:67,0:67:99:0,175,2098 0/0:89,0:90:99:0,229,2646 0/0:115,0:115:99:0,304,3518 0/0:115,0:116:99:0,286,3350 0/0:83,0:83:99:0,223,2579 0/0:132,0:132:99:0,370,4582 0/0:72,0:72:99:0,208,2566 0/0:88,0:88:99:0,229,2825 0/0:83,0:83:99:0,229,2787 0/0:53,0:53:99:0,135,1651 0/0:75,0:75:99:0,211,2433 0/0:63,0:63:99:0,177,1986 0/0:66,0:66:99:0,171,1986 0/0:50,0:50:99:0,141,1649 0/0:114,0:114:99:0,292,3435 0/0:80,0:80:99:0,223,2539 0/0:63,0:64:99:0,177,2060 0/0:55,0:55:99:0,147,1736 0/1:36,37:73:99:1052,0,961 0/0:87,0:87:99:0,238,2743 0/0:64,0:64:99:0,183,2112 0/0:55,0:55:99:0,159,1877 0/0:55,0:55:99:0,156,1840 0/0:60,0:60:99:0,159,1883 0/0:59,0:59:99:0,165,1847 16 70503075 . T A 1200.82 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.467;DP=4809;DS;Dels=0.00;FS=12.170;HRun=0;HaplotypeScore=1.9636;InbreedingCoeff=-0.0120;MQ=59.50;MQ0=0;MQRankSum=0.736;QD=12.64;ReadPosRankSum=-0.166 GT:AD:DP:GQ:PL 0/0:87,0:87:99:0,229,2833 0/0:85,0:85:99:0,229,2798 0/0:59,0:59:99:0,162,1944 0/0:248,0:249:99:0,674,8298 0/0:224,0:224:99:0,590,7439 0/0:186,0:187:99:0,494,6356 0/0:159,0:159:99:0,403,5094 0/0:173,0:173:99:0,463,5777 0/0:90,0:90:99:0,247,2974 0/0:69,0:69:99:0,190,2280 0/0:76,0:76:99:0,208,2556 0/0:78,0:78:99:0,214,2574 0/0:73,0:74:99:0,190,2326 0/0:70,0:70:99:0,196,2363 0/0:250,0:250:99:0,620,7707 0/0:98,0:98:99:0,274,3310 0/0:96,0:96:99:0,259,3159 0/0:60,0:60:99:0,166,2008 0/0:128,0:128:99:0,346,4273 0/0:154,0:154:99:0,388,4856 0/0:150,0:150:99:0,385,4742 0/0:74,0:74:99:0,202,2460 0/0:250,0:250:99:0,665,8276 0/0:147,0:147:99:0,388,4913 0/0:172,0:172:99:0,460,5749 0/0:137,0:137:99:0,370,4611 0/0:76,0:76:99:0,205,2493 0/0:82,0:83:99:0,220,2722 0/0:63,0:63:99:0,165,2031 0/0:80,0:80:99:0,226,2744 0/1:49,46:95:99:1247,0,1404 0/0:145,0:146:99:0,352,4455 0/0:95,0:95:99:0,253,3103 0/0:70,0:70:99:0,202,2488 0/0:80,0:80:99:0,229,2757 0/0:76,0:76:99:0,211,2546 0/0:165,0:165:99:0,424,5202 0/0:69,0:70:99:0,169,2091 0/0:96,0:96:99:0,265,3238 0/0:70,0:70:99:0,190,2348 0/0:62,0:62:99:0,169,2050 0/0:86,0:86:99:0,241,2942 16 70508797 . C T 214.58 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.812;DP=376;Dels=0.00;FS=1.279;HRun=0;HaplotypeScore=0.5436;InbreedingCoeff=-0.0395;MQ=58.11;MQ0=0;MQRankSum=2.800;QD=12.62;ReadPosRankSum=0.285 GT:AD:DP:GQ:PL 0/0:2,1:3:6.01:0,6,60 0/0:10,0:10:24.07:0,24,283 0/0:5,0:5:12.04:0,12,153 0/0:15,0:15:45.11:0,45,513 0/0:17,0:17:42.12:0,42,504 0/0:8,0:8:21.07:0,21,268 0/0:18,0:19:45.14:0,45,567 0/0:12,0:12:33.04:0,33,362 0/0:6,0:6:12.03:0,12,147 0/0:1,0:1:3.01:0,3,39 0/0:10,0:10:27.07:0,27,327 0/1:2,4:6:59.10:127,0,59 0/1:6,5:11:99:149,0,182 0/0:7,0:7:21.06:0,21,247 0/0:24,0:25:69.19:0,69,792 0/0:13,0:13:36.09:0,36,400 0/0:8,0:8:21.07:0,21,265 0/0:4,0:4:12.03:0,12,135 0/0:6,0:6:18.05:0,18,198 0/0:12,0:12:33.09:0,33,380 0/0:6,0:6:15.04:0,15,184 0/0:6,0:6:18.04:0,18,196 0/0:20,0:20:51.15:0,51,627 0/0:7,0:7:21.06:0,21,251 0/0:12,0:12:33.10:0,33,424 0/0:14,0:14:36.06:0,36,423 0/0:5,0:5:15.04:0,15,179 0/0:9,0:9:24.07:0,24,285 0/0:11,0:11:33.10:0,33,398 0/0:7,0:7:18.05:0,18,201 0/0:7,0:7:18.06:0,18,222 0/0:14,0:14:33.09:0,33,398 0/0:10,0:10:30.07:0,30,331 0/0:7,0:7:21.05:0,21,232 0/0:7,0:7:18.05:0,18,210 0/0:6,0:6:18.06:0,18,226 0/0:4,0:4:12.03:0,12,140 0/0:5,0:5:15.04:0,15,182 0/0:4,0:4:12.02:0,12,124 0/0:8,0:8:24.07:0,24,283 0/0:3,0:3:9.02:0,9,100 0/0:6,0:6:18.05:0,18,216 16 70508851 . A G 194.24 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.568;DP=472;Dels=0.00;FS=12.350;HRun=1;HaplotypeScore=0.4489;InbreedingCoeff=-0.0297;MQ=58.15;MQ0=0;MQRankSum=1.495;QD=12.14;ReadPosRankSum=-0.394 GT:AD:DP:GQ:PL 0/1:4,5:9:75.02:133,0,75 0/1:3,4:7:82.88:123,0,83 0/0:5,0:5:15.05:0,15,177 0/0:15,0:15:45.13:0,45,522 0/0:17,0:17:51.15:0,51,593 0/0:10,0:10:27.08:0,27,326 0/0:15,0:15:45.14:0,45,552 0/0:12,0:12:33.10:0,33,405 0/0:4,0:4:9.03:0,9,104 0/0:9,0:10:27.07:0,27,305 0/0:12,0:12:36.11:0,36,430 0/0:5,0:5:15.04:0,15,173 0/0:13,0:14:36.10:0,36,416 0/0:6,0:6:15.04:0,15,173 0/0:31,0:31:72.21:0,72,867 0/0:17,0:17:51.15:0,51,598 0/0:7,0:7:21.06:0,21,241 0/0:7,0:7:21.06:0,21,245 0/0:8,0:8:24.06:0,24,277 0/0:15,0:15:45.14:0,45,534 0/0:16,0:16:45.09:0,45,517 0/0:13,0:13:36.10:0,36,408 0/0:25,0:27:72.20:0,72,828 0/0:7,0:7:21.06:0,21,243 0/0:13,0:13:39.11:0,39,461 0/0:14,0:14:39.10:0,39,455 0/0:5,0:5:15.01:0,15,156 0/0:12,0:12:36.10:0,36,407 0/0:12,0:12:36.10:0,36,423 0/0:12,0:12:36.09:0,36,405 0/0:8,0:8:24.07:0,24,289 0/0:12,0:12:33.10:0,33,391 0/0:12,0:12:36.11:0,36,425 0/0:9,0:9:27.08:0,27,319 0/0:9,0:9:27.06:0,27,295 0/0:13,0:13:39.08:0,39,436 0/0:15,0:15:45.10:0,45,508 0/0:7,0:7:18.05:0,18,216 0/0:9,0:9:24.05:0,24,269 0/0:10,0:10:30.09:0,30,359 0/0:3,0:3:9.03:0,9,105 0/0:8,0:8:18.05:0,18,207 16 70515355 . C T 55920.28 . AC=42;AF=0.500;AN=84;BaseQRankSum=17.931;DP=4018;DS;Dels=0.00;FS=1.163;HRun=0;HaplotypeScore=3.0420;InbreedingCoeff=-0.2381;MQ=58.81;MQ0=0;MQRankSum=9.521;QD=17.61;ReadPosRankSum=0.781 GT:AD:DP:GQ:PL 0/1:37,31:69:99:816,0,1035 0/1:41,35:77:99:943,0,1046 1/1:3,65:68:99:2144,102,0 0/1:127,73:200:99:1840,0,3448 0/1:89,70:159:99:1893,0,2517 0/0:129,0:130:99:0,346,4203 0/0:121,0:121:99:0,328,3950 0/1:86,50:136:99:1277,0,2354 0/1:40,26:67:99:736,0,973 0/0:65,0:65:99:0,186,2107 0/1:38,31:69:99:831,0,1001 0/1:36,31:67:99:817,0,859 0/1:27,28:55:99:792,0,581 0/1:32,32:65:99:864,0,830 1/1:0,241:241:99:7867,668,0 0/1:37,30:67:99:749,0,978 0/1:49,39:88:99:1079,0,1297 0/1:27,20:47:99:526,0,657 0/0:136,0:138:99:0,370,4033 0/1:91,63:156:99:1632,0,2294 0/1:54,65:124:99:1789,0,1405 0/1:52,53:106:99:1414,0,1264 1/1:1,184:190:99:6020,487,0 0/1:58,35:96:99:931,0,1670 0/1:68,46:114:99:1239,0,1930 1/1:0,79:82:99:2658,220,0 0/1:25,26:51:99:705,0,551 0/1:30,36:66:99:1036,0,692 1/1:0,49:49:99:1721,144,0 0/0:51,0:51:99:0,138,1527 0/0:72,0:72:99:0,195,2174 0/0:149,0:150:99:0,379,4230 0/0:115,0:115:99:0,307,3474 1/1:1,65:66:99:2069,147,0 0/1:43,34:78:99:868,0,1137 1/1:0,70:72:99:2402,208,0 1/1:0,120:121:99:3902,331,0 0/1:38,33:71:99:871,0,943 0/1:24,32:57:99:957,0,541 0/1:30,37:67:99:1098,0,704 0/1:44,28:74:99:714,0,1097 0/1:35,26:61:99:721,0,882 16 70698518 . T C 542.10 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.441;DP=1353;Dels=0.00;FS=5.591;HRun=2;HaplotypeScore=1.2837;InbreedingCoeff=-0.0244;MQ=58.96;MQ0=0;MQRankSum=-1.631;QD=9.35;ReadPosRankSum=-0.746 GT:AD:DP:GQ:PL 0/0:26,0:26:63.16:0,63,739 0/0:20,0:20:48.12:0,48,554 0/0:15,0:15:42.12:0,42,493 0/0:95,0:95:99:0,241,2880 0/0:86,0:88:99:0,220,2571 0/0:49,0:49:99:0,123,1477 0/0:49,1:50:99:0,117,1406 0/0:47,1:48:99:0,126,1490 0/0:22,0:22:60.17:0,60,714 0/0:16,0:17:45.13:0,45,520 0/0:14,0:15:39.09:0,39,463 0/0:16,0:16:42.12:0,42,509 0/0:18,0:18:45.12:0,45,539 0/0:27,1:28:75.18:0,75,867 0/0:60,0:60:99:0,156,1801 0/0:25,0:25:72.18:0,72,823 0/0:11,0:12:30.09:0,30,354 0/0:14,0:14:36.10:0,36,417 0/0:49,0:49:99:0,129,1525 0/0:41,0:41:99:0,102,1186 0/1:19,14:33:99:251,0,472 0/1:12,13:25:99:354,0,338 0/0:111,0:111:99:0,277,3353 0/0:46,0:46:99:0,114,1329 0/0:51,0:51:99:0,120,1421 0/0:37,0:37:87.22:0,87,1018 0/0:10,0:11:27.08:0,27,330 0/0:22,0:22:54.17:0,54,673 0/0:12,0:12:33.10:0,33,399 0/0:28,0:28:75.20:0,75,863 0/0:14,0:15:39.11:0,39,453 0/0:38,0:38:96.26:0,96,1143 0/0:21,0:21:57.16:0,57,679 0/0:14,0:14:39.11:0,39,459 0/0:18,0:19:54.13:0,54,610 0/0:26,0:26:69.20:0,69,814 0/0:27,0:27:75.19:0,75,855 0/0:21,0:21:57.12:0,57,639 0/0:20,0:20:54.15:0,54,623 0/0:15,0:15:42.12:0,42,500 0/0:22,0:22:66.18:0,66,752 0/0:31,0:31:87.25:0,87,1033 16 70726795 . C A 9504.80 . AC=36;AF=0.429;AN=84;BaseQRankSum=3.204;DP=728;Dels=0.00;FS=4.298;HRun=0;HaplotypeScore=0.7818;InbreedingCoeff=-0.0703;MQ=58.41;MQ0=0;MQRankSum=1.206;QD=18.35;ReadPosRankSum=0.772 GT:AD:DP:GQ:PL 0/1:8,7:15:99:194,0,226 0/1:9,6:15:99:135,0,258 1/1:0,12:12:24.05:272,24,0 1/1:0,28:28:78.23:937,78,0 0/1:14,20:34:99:597,0,401 0/0:8,0:8:24.07:0,24,297 0/0:8,0:8:24.07:0,24,294 0/1:8,8:16:99:209,0,261 0/1:6,11:18:99:308,0,120 0/0:25,0:25:69.18:0,69,811 0/1:4,10:14:99:235,0,110 0/1:8,8:16:99:214,0,208 0/1:3,7:10:74.43:207,0,74 1/1:0,28:28:81.24:975,81,0 0/0:38,0:38:99:0,102,1156 0/1:18,11:29:99:255,0,465 0/0:16,0:16:39.07:0,39,419 0/0:15,0:15:39.07:0,39,422 0/0:22,0:22:54.15:0,54,623 0/1:16,8:24:99:187,0,466 1/1:0,11:11:30.09:355,30,0 0/1:4,7:11:99:205,0,105 0/1:16,10:26:99:255,0,466 1/1:0,22:22:63.19:773,63,0 1/1:0,23:23:63.19:774,63,0 0/1:11,7:18:99:206,0,299 0/1:4,6:10:99:190,0,111 0/1:5,7:12:80.12:196,0,80 0/1:4,4:8:92.43:92,0,110 0/0:14,0:14:42.10:0,42,480 0/0:11,0:11:30.08:0,30,342 0/1:9,7:16:99:161,0,241 0/0:10,0:10:27.08:0,27,308 0/1:11,6:18:99:176,0,282 0/0:19,0:19:51.11:0,51,567 1/1:0,17:18:39.11:467,39,0 0/1:7,11:19:99:212,0,153 0/1:8,6:14:99:155,0,207 0/1:9,10:19:99:245,0,217 0/0:15,0:15:42.11:0,42,472 0/0:9,0:9:24.07:0,24,285 0/1:4,10:14:84.08:314,0,84 16 70867906 . G C 35.66 . AC=8;AF=0.095;AN=84;BaseQRankSum=-5.628;DP=1619;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.4742;InbreedingCoeff=-0.1507;MQ=13.66;MQ0=874;MQRankSum=3.743;QD=0.12;ReadPosRankSum=-5.963 GT:AD:DP:GQ:PL 0/0:28,2:30:12.01:0,12,121 0/1:29,4:33:14.72:15,0,36 0/0:35,3:38:20.96:0,21,181 0/1:62,11:73:15.45:15,0,115 0/0:56,10:66:13.25:0,13,282 0/0:51,5:56:26.93:0,27,214 0/0:41,5:46:23.93:0,24,189 0/0:46,5:51:17.95:0,18,142 0/0:34,3:37:17.95:0,18,142 0/1:24,4:28:17.69:23,0,18 0/0:34,1:35:2.99:0,3,24 0/0:21,2:23:2.99:0,3,24 0/0:22,0:22:8.99:0,9,84 0/0:21,1:22:11.97:0,12,95 0/0:72,9:81:0.35:0,0,206 0/0:31,5:36:23.97:0,24,206 0/0:35,5:41:26.96:0,27,238 0/0:22,1:23:5.98:0,6,47 0/0:23,3:26:14.99:0,15,134 0/0:42,1:43:23.96:0,24,203 0/0:35,4:39:11.97:0,12,95 0/0:26,4:30:11.96:0,12,94 0/0:71,8:80:4.38:0,4,239 0/0:45,4:49:8.98:0,9,71 0/0:45,6:51:14.98:0,15,128 0/0:51,5:56:6:0,6,52 0/1:20,1:21:14.69:15,0,48 0/0:26,0:26:8.97:0,9,70 0/0:25,4:29:8.99:0,9,79 0/0:32,0:32:8.96:0,9,69 0/1:28,4:32:13.67:14,0,87 0/1:45,5:50:11.68:12,0,83 0/0:25,1:26:14.98:0,15,134 0/0:19,4:23:6:0,6,53 0/0:23,3:26:8.97:0,9,70 0/1:28,7:35:24.99:25,0,59 0/0:45,4:49:11.98:0,12,104 0/0:30,4:34:11.97:0,12,95 0/0:20,5:25:2.99:0,3,24 0/0:24,3:27:8.99:0,9,79 0/1:26,3:29:17.68:30,0,18 0/0:37,3:40:20.95:0,21,171 16 70867990 . C T 553.57 . AC=3;AF=0.036;AN=84;BaseQRankSum=-2.111;DP=3499;Dels=0.00;FS=3.952;HRun=2;HaplotypeScore=0.9483;InbreedingCoeff=-0.0423;MQ=12.54;MQ0=1637;MQRankSum=0.237;QD=1.80;ReadPosRankSum=1.882 GT:AD:DP:GQ:PL 0/0:62,0:62:23.98:0,24,216 0/0:68,0:68:32.94:0,33,276 0/0:67,0:67:29.96:0,30,257 0/0:154,0:154:99:0,117,1042 0/0:130,0:130:77.99:0,78,758 0/1:82,43:125:99:249,0,305 0/0:97,0:97:65.97:0,66,623 0/1:83,32:115:99:239,0,390 0/0:73,0:73:41.93:0,42,354 0/0:73,0:73:26.93:0,27,213 0/0:70,0:70:47.90:0,48,396 0/0:57,1:58:3.26:0,3,172 0/0:63,0:63:38.93:0,39,323 0/0:61,0:61:38.94:0,39,331 0/0:212,0:213:99:0,183,1539 0/0:53,0:53:32.94:0,33,278 0/0:64,0:64:32.91:0,33,261 0/0:71,0:71:36:0,36,338 0/0:94,0:96:47.97:0,48,451 0/0:92,0:92:41.98:0,42,399 0/0:99,0:99:65.98:0,66,622 0/0:57,0:57:41.95:0,42,369 0/0:172,0:174:99:0,120,1057 0/0:76,0:76:44.94:0,45,399 0/0:108,0:108:74.99:0,75,724 0/0:95,1:96:53.91:0,54,460 0/0:54,0:54:11.97:0,12,95 0/0:74,2:76:41.93:0,42,358 0/0:46,0:46:47.88:0,48,386 0/0:74,0:74:44.89:0,45,364 0/0:62,0:62:44.89:0,45,364 0/0:102,0:102:26.99:0,27,251 0/1:48,20:68:95.92:142,0,96 0/0:57,0:57:23.95:0,24,195 0/0:61,0:61:29.96:0,30,261 0/0:76,0:76:41.95:0,42,366 0/0:89,0:90:53.91:0,54,453 0/0:54,1:55:20.96:0,21,175 0/0:70,0:70:36:0,36,337 0/0:67,0:67:41.92:0,42,349 0/0:52,0:52:41.91:0,42,344 0/0:74,0:74:32.99:0,33,302 16 70905984 . G A 377.30 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.706;DP=6025;DS;Dels=0.00;FS=2.077;HRun=0;HaplotypeScore=0.4450;InbreedingCoeff=-0.0121;MQ=17.33;MQ0=4379;MQRankSum=0.641;QD=3.70;ReadPosRankSum=0.997 GT:AD:DP:GQ:PL 0/0:105,0:105:63.18:0,63,733 0/0:120,0:120:90.27:0,90,1062 0/0:107,0:107:99:0,105,1220 0/0:240,0:240:99:0,241,2913 0/0:239,0:239:99:0,211,2535 0/0:230,0:230:99:0,229,2693 0/0:192,0:192:99:0,196,2276 0/0:211,0:211:99:0,181,2137 0/0:93,1:95:66.18:0,66,752 0/0:107,0:107:75.22:0,75,885 0/0:111,0:111:81.23:0,81,942 0/0:115,1:116:90.24:0,90,1021 0/0:104,0:104:96.27:0,96,1114 0/0:121,0:122:72.20:0,72,831 0/0:229,2:231:99:0,149,1994 0/0:87,0:87:63.18:0,63,722 0/0:121,0:121:84.24:0,84,975 0/0:120,0:120:60.16:0,60,691 0/0:182,0:183:96.23:0,96,1062 0/0:183,2:185:99:0,132,1498 0/0:166,0:167:99:0,117,1319 0/0:104,0:104:66.20:0,66,775 0/0:241,0:241:99:0,214,2583 0/0:204,0:204:99:0,184,2273 0/0:212,0:212:99:0,211,2546 0/0:174,2:176:99:0,190,2219 0/0:85,0:86:39.12:0,39,463 0/0:106,1:107:48.98:0,49,885 0/0:115,1:116:54.16:0,54,633 0/0:122,0:122:78.23:0,78,912 0/0:122,0:123:78.22:0,78,904 0/0:153,0:153:99:0,129,1501 0/0:114,0:114:84.22:0,84,951 0/0:129,1:130:44.79:0,45,848 0/0:115,0:115:90.26:0,90,1044 0/0:129,0:129:99:0,108,1241 0/0:155,0:155:99:0,126,1458 0/0:100,0:101:63.15:0,63,699 0/0:117,1:118:72.19:0,72,817 0/0:109,0:109:66.19:0,66,771 0/1:70,32:102:99:424,0,213 0/0:114,0:115:93.27:0,93,1084 16 70913651 . G A 254.82 . AC=4;AF=0.048;AN=84;BaseQRankSum=-4.448;DP=4165;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3232;InbreedingCoeff=-0.0582;MQ=8.69;MQ0=3558;MQRankSum=0.457;QD=0.87;ReadPosRankSum=-1.909 GT:AD:DP:GQ:PL 0/0:67,0:67:21.05:0,21,232 0/0:102,0:102:18.01:0,18,160 0/0:51,0:51:24.03:0,24,239 0/0:249,1:250:45.08:0,45,463 0/0:220,0:220:36.04:0,36,359 0/0:137,0:137:33.05:0,33,339 0/0:115,0:115:15.04:0,15,171 0/0:128,0:128:18.03:0,18,192 0/0:70,0:70:18.03:0,18,191 0/0:52,0:52:9.01:0,9,92 0/0:68,0:68:9.01:0,9,92 0/0:84,0:84:27.03:0,27,262 0/0:64,0:64:12:0,12,107 0/1:58,16:74:59.01:59,0,98 0/0:216,0:219:45.07:0,45,466 0/0:63,0:63:27.04:0,27,282 0/1:52,26:78:39.08:136,0,39 0/0:81,0:81:24.03:0,24,240 0/0:88,0:89:24.04:0,24,253 0/0:95,0:95:15.02:0,15,157 0/0:114,0:114:45.04:0,45,433 0/0:60,0:61:24.02:0,24,244 0/0:241,1:242:69.10:0,69,704 0/0:120,0:120:18.03:0,18,180 0/0:185,0:185:27.07:0,27,309 0/0:139,0:139:21.02:0,21,206 0/0:79,0:79:27.02:0,27,259 0/1:47,13:60:48.84:95,0,49 0/0:69,0:69:33.04:0,33,324 0/0:65,0:65:30.03:0,30,288 0/0:71,0:71:9.02:0,9,99 0/0:92,0:92:27.03:0,27,262 0/0:82,0:82:33.05:0,33,343 0/0:81,0:82:30.03:0,30,297 0/1:72,10:82:50.74:51,0,228 0/0:77,0:77:15.03:0,15,154 0/0:79,0:79:21.01:0,21,187 0/0:73,0:73:27.04:0,27,277 0/0:68,1:69:24.04:0,24,248 0/0:75,0:75:24.03:0,24,235 0/0:64,1:65:18.01:0,18,165 0/0:77,0:77:39.05:0,39,387 16 70928357 . C T 443.67 . 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G A 63.46 . 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G T 19304.75 . 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A G 3587.98 . 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C T 1217.59 . 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A G 9254.37 . 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G T 558.24 . 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G A 6154.70 . 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C G 5261.22 . 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A G 1087.05 . 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T G 123.13 . 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T G 29141.63 . 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G T 16939.03 . 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C T 16.60 . AC=4;AF=0.118;AN=34;BaseQRankSum=-4.185;DP=9153;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.8002;InbreedingCoeff=-0.0517;MQ=5.54;MQ0=6992;MQRankSum=1.138;QD=0.02;ReadPosRankSum=0.335 GT:AD:DP:GQ:PL 1/1:163,53:216:3.01:31,3,0 ./. ./. ./. ./. 0/0:241,0:241:3.01:0,3,31 0/0:204,0:204:3.01:0,3,31 0/0:160,32:192:3.01:0,3,45 ./. ./. 0/0:202,0:202:3.01:0,3,31 ./. ./. 0/0:240,0:241:3.01:0,3,31 0/0:248,0:250:6.01:0,6,61 ./. ./. ./. 0/0:242,0:245:9.01:0,9,87 0/0:248,1:250:3.01:0,3,31 ./. 0/1:206,28:234:21.57:22,0,50 0/0:248,0:248:6.01:0,6,61 ./. 0/0:165,32:197:6.01:0,6,61 0/0:234,0:234:9.02:0,9,106 0/0:163,45:208:3.01:0,3,31 0/0:170,43:214:3.01:0,3,31 ./. ./. ./. ./. 0/0:218,0:218:3.01:0,3,31 ./. ./. ./. 0/1:188,56:246:24.58:25,0,25 ./. ./. ./. ./. ./. 16 74446716 . A AG 1442.47 . 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T G 6287.33 . AC=43;AF=0.512;AN=84;BaseQRankSum=-12.100;DP=5195;DS;Dels=0.00;FS=3.209;HRun=2;HaplotypeScore=2.4486;InbreedingCoeff=-0.9138;MQ=12.10;MQ0=3841;MQRankSum=5.603;QD=1.21;ReadPosRankSum=-8.743 GT:AD:DP:GQ:PL 0/1:58,19:78:67.79:68,0,75 0/1:64,26:90:70.38:70,0,136 0/1:41,20:62:69.79:70,0,82 0/1:154,67:221:99:229,0,217 0/1:131,42:173:74.49:143,0,74 0/1:108,66:174:99:351,0,202 0/1:92,56:148:99:234,0,125 0/1:85,38:123:42.09:84,0,42 0/1:56,28:84:2.87:160,0,0 0/1:59,22:81:99:159,0,103 0/1:50,21:71:38.29:38,0,79 1/1:67,37:104:18.01:172,18,0 0/1:71,27:98:99:166,0,157 0/1:98,53:151:99:204,0,243 0/1:201,40:241:3.28:3,0,345 0/1:61,23:84:99:120,0,149 0/1:104,54:159:81.29:81,0,209 0/1:56,21:77:39.11:39,0,111 0/1:139,46:186:99:134,0,513 0/1:142,91:233:99:450,0,481 0/1:114,27:141:99:99,0,148 0/1:87,70:157:99:628,0,237 0/1:158,38:196:93.26:93,0,236 0/1:76,39:116:64.62:139,0,65 0/1:88,33:121:99:113,0,179 0/1:68,36:104:90.09:90,0,182 0/1:54,25:79:78.60:96,0,79 0/1:65,36:103:99:136,0,185 0/1:59,30:89:99:123,0,114 0/1:66,45:111:63.51:160,0,64 0/1:69,32:101:40.61:41,0,355 0/1:101,89:190:99:412,0,181 0/1:65,60:126:99:443,0,142 0/1:87,35:122:18.39:114,0,18 0/1:57,30:87:88.15:88,0,172 0/1:71,21:92:23.47:23,0,58 0/1:103,19:122:27.83:28,0,286 0/1:63,36:99:39.98:40,0,161 0/1:73,35:108:99:122,0,118 0/1:71,24:95:81.39:81,0,141 0/1:81,27:108:99:123,0,106 0/1:59,31:90:99:120,0,156 16 74446721 . C G 352.16 . AC=17;AF=0.202;AN=84;BaseQRankSum=-7.702;DP=4805;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.4798;InbreedingCoeff=-0.1555;MQ=11.21;MQ0=3687;MQRankSum=2.140;QD=0.18;ReadPosRankSum=-9.364 GT:AD:DP:GQ:PL 0/0:69,8:77:9.01:0,9,95 0/1:67,12:80:12.56:13,0,145 0/0:45,10:55:9.02:0,9,93 0/1:170,39:209:50.30:50,0,306 0/1:134,26:160:16.37:16,0,110 0/1:121,28:149:39.49:39,0,229 0/1:107,33:140:22.29:22,0,239 0/0:97,15:112:9.01:0,9,91 0/1:61,16:77:35.40:35,0,35 0/1:71,6:77:15.55:16,0,123 0/0:61,13:74:12.03:0,12,141 1/1:77,16:94:12.02:123,12,0 0/0:76,14:90:0.37:0,0,208 0/1:110,22:133:91.84:92,0,240 0/0:236,14:250:45.11:0,45,481 0/0:70,10:80:23.98:0,24,218 0/0:113,28:141:24.05:0,24,258 0/0:60,8:68:18:0,18,171 0/0:157,16:175:66.12:0,66,691 0/1:188,30:218:3.73:4,0,543 0/0:127,7:135:3.33:0,3,223 0/1:113,31:144:9.07:9,0,375 0/0:174,22:196:33.06:0,33,345 0/0:82,20:102:15.02:0,15,151 0/1:99,15:114:6.43:6,0,201 0/0:81,13:94:21.06:0,21,240 0/0:59,16:75:8.99:0,9,81 0/0:73,19:92:24.04:0,24,253 0/1:69,16:85:39.03:39,0,157 0/0:78,25:103:15.03:0,15,157 0/0:78,12:90:16.39:0,16,386 0/0:131,33:164:2.83:0,0,282 0/0:80,29:109:0.56:0,1,284 0/1:99,15:114:17.59:18,0,88 0/0:69,11:80:21.03:0,21,215 0/0:75,7:82:9.03:0,9,103 0/0:107,4:113:33.04:0,33,337 0/0:76,10:86:18.03:0,18,187 0/1:84,13:97:9.42:9,0,175 0/1:73,15:88:13.35:13,0,149 0/0:95,7:103:18.03:0,18,186 0/0:66,13:79:21.02:0,21,214 16 74446735 . T C 280.19 . AC=3;AF=0.036;AN=84;BaseQRankSum=4.100;DP=5508;DS;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.6274;InbreedingCoeff=-0.0381;MQ=10.91;MQ0=4319;MQRankSum=-0.471;QD=1.01;ReadPosRankSum=-1.221 GT:AD:DP:GQ:PL 0/1:79,22:101:99:179,0,210 0/0:84,8:95:14.38:0,14,328 0/0:67,0:67:27.08:0,27,304 0/0:227,0:227:69.15:0,69,738 0/0:162,0:163:24:0,24,233 0/0:162,0:163:66.12:0,66,695 0/0:139,1:140:51.07:0,51,527 0/0:124,0:124:27.04:0,27,281 0/1:81,9:90:39.12:96,0,39 0/0:89,0:91:30.05:0,30,313 0/1:73,14:87:80.44:80,0,142 0/0:120,0:120:18.05:0,18,201 0/0:113,0:113:54.13:0,54,591 0/0:144,0:144:57.11:0,57,602 0/0:250,0:250:75.20:0,75,827 0/0:104,0:105:51.06:0,51,521 0/0:162,0:163:69.17:0,69,748 0/0:86,0:86:30:0,30,285 0/0:223,0:228:99:0,105,1111 0/0:246,1:250:99:0,132,1386 0/0:173,2:176:63.11:0,63,666 0/0:145,1:147:87.16:0,87,922 0/0:232,1:233:69.15:0,69,739 0/0:113,0:114:36.06:0,36,369 0/0:140,0:141:54.05:0,54,542 0/0:96,0:97:27.07:0,27,295 0/0:89,0:89:21.01:0,21,206 0/0:100,0:101:51.11:0,51,548 0/0:87,0:88:21.04:0,21,220 0/0:122,1:123:39.08:0,39,415 0/0:107,0:108:60.08:0,60,622 0/0:156,1:160:99:0,102,1101 0/0:113,0:113:66.12:0,66,693 0/0:132,0:133:24.07:0,24,266 0/0:107,1:109:39.05:0,39,395 0/0:100,0:101:27.08:0,27,303 0/0:149,0:149:60.11:0,60,632 0/0:100,0:100:36.08:0,36,381 0/0:112,0:113:33.06:0,33,346 0/0:98,0:98:42.06:0,42,429 0/0:127,0:128:36.09:0,36,392 0/0:80,0:80:33.05:0,33,343 16 74517023 . C T 306.47 . AC=8;AF=0.095;AN=84;BaseQRankSum=-20.331;DP=3574;DS;Dels=0.00;FS=441.879;HRun=1;HaplotypeScore=1.1589;InbreedingCoeff=-0.1369;MQ=58.95;MQ0=0;MQRankSum=-0.474;QD=0.50;ReadPosRankSum=-14.289 GT:AD:DP:GQ:PL 0/0:43,26:69:10.35:0,10,995 0/0:56,17:73:41.51:0,42,1238 0/0:40,16:56:11.57:0,12,1036 0/0:102,57:159:4.05:0,4,2357 0/0:65,46:111:50.97:0,51,1501 0/0:83,28:112:92.47:0,92,2087 0/0:79,30:109:84.63:0,85,1963 0/0:83,27:110:87.99:0,88,1889 0/0:46,16:62:75.60:0,76,1157 0/0:42,20:62:44.15:0,44,1083 0/1:32,21:53:5.15:5,0,486 0/0:41,21:62:81.47:0,81,1169 0/0:47,20:67:40.23:0,40,1060 0/0:47,18:65:61.68:0,62,1017 0/0:131,79:212:29.94:0,30,3503 0/1:36,17:53:28.16:28,0,807 0/0:48,21:69:23.91:0,24,1083 0/0:50,25:75:37.24:0,37,967 0/1:69,50:119:99:126,0,1588 0/0:97,16:113:99:0,149,2317 0/1:65,41:107:34.72:35,0,1561 0/0:47,18:65:65.23:0,65,1107 0/0:95,60:155:1.98:2,0,2252 0/0:84,27:111:44.23:0,44,1734 0/0:83,34:117:83.55:0,84,1904 0/0:88,45:134:46.17:0,46,1994 0/0:43,9:52:63.72:0,64,1044 0/0:45,19:64:21.54:0,22,1021 0/0:31,9:40:18.10:0,18,809 0/1:42,25:67:16.18:16,0,883 0/1:33,19:52:19.51:20,0,750 0/0:100,20:120:99:0,104,2060 0/0:55,19:74:20.13:0,20,1113 0/1:38,21:59:46.86:47,0,905 0/0:44,13:58:46.89:0,47,1032 0/0:46,16:62:28.35:0,28,1140 0/1:64,33:97:99:142,0,1469 0/0:61,16:77:65:0,65,1397 0/0:43,21:64:19.45:0,19,946 0/0:42,27:69:1.26:5,0,933 0/0:42,17:60:2.83:0,0,901 0/0:41,17:58:81.21:0,81,950 16 74566028 . G A 8.19 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.083;DP=2180;Dels=0.00;FS=12.153;HRun=1;HaplotypeScore=0.7089;InbreedingCoeff=-0.0243;MQ=47.57;MQ0=6;MQRankSum=-5.531;QD=0.09;ReadPosRankSum=-6.555 GT:AD:DP:GQ:PL 0/0:39,0:39:93.26:0,93,1148 0/0:51,0:51:99:0,114,1416 0/0:45,0:45:99:0,117,1448 0/0:80,2:84:99:0,129,2451 0/0:80,0:80:99:0,199,2620 0/0:54,0:54:99:0,135,1732 0/0:64,0:64:99:0,153,1970 0/0:50,3:53:70.15:0,70,1612 0/0:49,1:50:93.87:0,94,1506 0/0:38,0:38:99:0,99,1182 0/1:49,5:54:22.34:22,0,1432 0/0:53,1:54:99:0,105,1656 0/0:46,0:46:99:0,120,1420 0/0:32,0:32:84.21:0,84,992 0/0:142,3:145:99:0,283,4161 0/0:26,0:26:72.20:0,72,852 0/0:44,1:45:86.91:0,87,1390 0/0:38,0:38:99:0,99,1206 0/0:46,1:47:99:0,111,1399 0/0:62,0:62:99:0,147,1832 0/0:47,5:52:46.11:0,46,1405 0/0:30,0:30:72.22:0,72,921 0/0:80,2:82:99:0,154,2543 0/0:56,1:57:99:0,101,1743 0/0:64,1:65:99:0,130,2006 0/0:73,0:73:99:0,190,2518 0/0:42,0:42:99:0,102,1268 0/0:38,0:38:99:0,99,1250 0/0:38,2:40:57.51:0,58,1146 0/0:51,0:51:99:0,138,1638 0/0:31,0:31:87.23:0,87,1026 0/0:39,1:40:96.25:0,96,1152 0/1:37,5:42:46.58:47,0,974 0/0:37,1:38:75.65:0,76,1173 0/0:43,0:43:99:0,105,1302 0/0:37,1:38:68.82:0,69,1106 0/0:48,0:48:99:0,126,1467 0/0:73,0:73:99:0,174,2122 0/0:39,0:39:99:0,108,1277 0/0:57,0:57:99:0,141,1657 0/0:48,0:48:99:0,114,1378 0/0:46,0:46:99:0,123,1452 16 74566050 . G A 133.44 . AC=6;AF=0.071;AN=84;BaseQRankSum=-4.623;DP=1613;Dels=0.00;FS=13.523;HRun=1;HaplotypeScore=0.5382;InbreedingCoeff=-0.0768;MQ=47.84;MQ0=6;MQRankSum=-5.976;QD=0.66;ReadPosRankSum=0.633 GT:AD:DP:GQ:PL 0/0:29,0:29:75.24:0,75,973 0/0:38,0:38:99:0,102,1278 0/0:37,0:37:99:0,105,1331 0/0:62,2:64:97.42:0,97,2174 0/0:55,0:55:99:0,160,2116 0/0:37,0:37:99:0,102,1364 0/0:42,0:42:99:0,111,1448 0/0:34,3:37:28.34:0,28,1204 0/0:40,1:41:75.75:0,76,1350 0/0:31,0:31:93.29:0,93,1158 0/1:36,6:42:93.84:94,0,1162 0/0:40,1:41:75.76:0,76,1357 0/0:37,0:37:99:0,102,1307 0/0:23,1:24:42.59:0,43,829 0/0:98,5:104:99:0,135,3227 0/0:22,0:22:60.19:0,60,769 0/0:34,2:36:33.09:0,33,1166 0/0:25,0:25:75.22:0,75,937 0/0:33,0:33:93.29:0,93,1180 0/0:44,0:44:99:0,123,1576 0/1:39,4:43:37.95:38,0,1176 0/0:23,0:23:66.19:0,66,834 0/0:57,2:59:89.47:0,89,1980 0/0:41,2:43:80.39:0,80,1538 0/0:53,3:56:81.21:0,81,1687 0/0:59,1:60:99:0,124,2095 0/0:24,1:25:47.57:0,48,885 0/0:32,0:32:87.27:0,87,1103 0/1:28,3:31:20.81:21,0,920 0/0:35,0:35:96.31:0,96,1236 0/0:25,0:25:72.23:0,72,921 0/0:27,1:28:72.23:0,72,926 0/1:26,3:29:30.76:31,0,787 0/1:24,3:27:24.74:25,0,828 0/0:35,0:35:99:0,102,1307 0/1:27,3:30:30.65:31,0,866 0/0:31,2:33:28.01:0,28,951 0/0:50,0:50:99:0,135,1729 0/0:27,0:27:81.26:0,81,1034 0/0:36,0:36:93.28:0,93,1170 0/0:32,0:32:90.28:0,90,1141 0/0:35,0:35:96.27:0,96,1199 16 74657946 . C G 355.70 . AC=12;AF=0.143;AN=84;BaseQRankSum=-5.714;DP=1309;Dels=0.00;FS=227.734;HRun=1;HaplotypeScore=0.5335;InbreedingCoeff=-0.1904;MQ=58.68;MQ0=0;MQRankSum=1.349;QD=0.86;ReadPosRankSum=-8.489 GT:AD:DP:GQ:PL 0/0:20,5:25:13.78:0,14,479 0/0:15,11:26:8.42:0,8,343 0/0:14,4:18:33.08:0,33,372 0/1:22,24:46:99:113,0,487 0/0:18,10:28:51.16:0,51,640 0/1:11,18:29:35.81:36,0,279 0/0:19,13:33:9.48:0,9,375 0/0:16,10:26:39.12:0,39,497 0/0:18,8:26:36.11:0,36,423 0/0:15,9:24:33.07:0,33,365 0/1:18,14:32:28.36:28,0,381 0/0:17,7:24:42.11:0,42,483 0/1:19,13:32:12.77:13,0,417 0/0:12,13:25:30.08:0,30,345 0/0:46,37:84:57.71:0,58,1312 0/0:18,10:28:45.13:0,45,522 0/0:19,10:29:45.13:0,45,518 0/1:13,8:21:5.42:5,0,257 0/1:24,15:39:6.86:7,0,640 0/0:30,12:42:72.16:0,72,822 0/1:25,17:42:37.75:38,0,603 0/0:14,12:26:2.33:1,0,273 0/1:27,27:54:69.04:69,0,582 0/0:16,11:27:0.47:0,0,313 0/0:17,9:26:39.12:0,39,502 0/0:17,11:28:33.09:0,33,396 0/0:18,12:30:21.64:0,22,552 0/1:14,17:31:17.60:18,0,335 0/0:10,21:31:22.59:0,23,242 0/0:16,6:22:34.99:0,35,415 0/0:10,2:12:21.05:0,21,231 0/0:30,10:40:23.16:0,23,830 0/1:18,11:29:88.94:89,0,257 0/0:13,11:24:2.83:0,0,303 0/0:22,10:32:16.58:0,17,470 0/0:18,12:30:36.10:0,36,417 0/0:27,10:37:52.50:0,53,825 0/0:25,11:36:48.57:0,49,537 0/1:17,9:26:28.98:29,0,295 0/0:17,16:33:30.08:0,30,345 0/0:17,8:25:36.11:0,36,427 0/1:17,14:31:45.78:46,0,507 16 74670458 . C T 22931.66 . AC=40;AF=0.476;AN=84;BaseQRankSum=20.053;DP=1753;Dels=0.00;FS=5.163;HRun=0;HaplotypeScore=0.5243;InbreedingCoeff=0.1409;MQ=59.43;MQ0=0;MQRankSum=0.110;QD=20.05;ReadPosRankSum=-0.130 GT:AD:DP:GQ:PL 0/1:16,8:24:99:175,0,455 0/1:12,13:25:99:302,0,303 0/0:25,0:25:69.18:0,69,767 0/1:56,31:87:99:867,0,1568 0/1:49,30:79:99:894,0,1489 1/1:0,49:49:99:1837,144,0 0/1:30,22:52:99:671,0,924 1/1:0,47:47:99:1697,135,0 0/1:21,13:34:99:353,0,541 0/1:14,15:29:99:413,0,349 1/1:0,19:19:57.18:693,57,0 1/1:0,26:26:75.23:918,75,0 1/1:0,23:23:63.19:777,63,0 1/1:0,27:27:78.25:970,78,0 1/1:0,95:95:99:3087,250,0 1/1:0,37:37:99:1360,111,0 1/1:0,32:32:87.27:1088,87,0 0/1:18,18:36:99:509,0,448 0/0:43,0:43:99:0,111,1209 0/1:30,21:51:99:615,0,755 0/0:53,0:53:99:0,150,1662 0/1:17,16:33:99:423,0,420 0/0:89,0:89:99:0,244,3008 0/0:71,0:71:99:0,199,2399 0/0:62,0:62:99:0,172,2106 0/1:30,21:51:99:547,0,889 0/0:20,0:21:57.15:0,57,632 0/1:18,16:34:99:440,0,464 0/0:25,0:25:69.18:0,69,762 0/1:16,11:28:99:317,0,427 0/1:12,19:31:99:551,0,289 0/0:67,0:67:99:0,177,2004 0/0:33,0:33:96.24:0,96,1035 0/1:20,16:36:99:432,0,531 1/1:1,21:22:32.77:747,33,0 0/0:39,0:39:99:0,105,1186 0/1:23,20:43:99:492,0,625 0/0:40,0:40:96.23:0,96,1075 1/1:0,29:29:81.25:1011,81,0 0/1:29,11:40:99:273,0,712 0/1:10,15:25:99:472,0,241 0/0:40,1:41:86.31:0,86,1256 16 74716641 . G A 2260.29 . 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T C 517.87 . AC=8;AF=0.095;AN=84;BaseQRankSum=14.320;DP=3060;Dels=0.00;FS=0.633;HRun=0;HaplotypeScore=1.5538;InbreedingCoeff=-0.1246;MQ=52.21;MQ0=79;MQRankSum=-16.827;QD=0.71;ReadPosRankSum=2.945 GT:AD:DP:GQ:PL 0/0:74,1:75:99:0,187,2270 0/0:57,0:57:99:0,138,1730 0/0:63,6:69:9.38:0,9,1781 0/0:89,0:89:99:0,238,2866 0/0:84,3:87:99:0,190,2616 0/0:62,3:65:99:0,132,2066 0/0:66,7:73:11.84:0,12,2016 0/0:54,8:62:13.76:0,14,1557 0/0:58,0:58:99:0,159,1882 0/0:50,0:50:99:0,138,1626 0/1:57,10:67:15.33:15,0,1704 0/0:54,1:55:99:0,153,1801 0/0:57,0:57:99:0,153,1837 0/0:59,1:60:99:0,159,1881 0/1:200,27:229:99:161,0,5335 0/0:58,5:63:86.61:0,87,1897 0/1:53,9:62:11.64:12,0,1529 0/0:55,2:57:99:0,120,1723 0/0:70,0:70:99:0,199,2366 0/0:70,0:70:99:0,190,2264 0/1:88,24:112:99:207,0,2521 0/1:51,9:60:83.41:83,0,1419 0/0:99,1:100:99:0,268,3240 0/0:75,5:80:78.59:0,79,2241 0/0:86,0:86:99:0,214,2637 0/0:69,1:70:99:0,135,2088 0/1:38,8:46:92.65:93,0,1169 0/0:70,4:74:99:0,102,2210 0/0:55,5:60:79.25:0,79,1662 0/1:48,8:56:10.07:10,0,1398 0/0:47,0:47:99:0,114,1411 0/0:77,4:81:99:0,100,2205 0/0:59,5:64:27.12:0,27,1721 0/0:81,0:81:99:0,217,2606 0/0:55,5:60:77.03:0,77,1803 0/0:62,0:62:99:0,172,2069 0/0:72,9:81:2.91:0,0,2149 0/0:69,13:82:29.23:0,29,1986 0/0:55,8:63:39.03:0,39,1684 0/0:66,11:77:1.14:5,0,1988 0/0:44,4:48:85.56:0,86,1375 0/1:78,17:95:51.03:51,0,2316 16 74983639 . G A 521.09 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.298;DP=2014;Dels=0.00;FS=0.812;HRun=1;HaplotypeScore=0.5623;InbreedingCoeff=-0.0120;MQ=59.37;MQ0=0;MQRankSum=0.318;QD=9.14;ReadPosRankSum=2.068 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,147,1897 0/0:45,0:45:99:0,114,1473 0/0:36,0:36:99:0,102,1320 0/0:68,0:68:99:0,172,2363 0/0:57,0:57:99:0,150,2074 0/0:49,0:49:99:0,129,1780 0/0:37,0:37:96.32:0,96,1339 0/0:45,0:45:99:0,114,1549 0/0:50,0:50:99:0,141,1822 0/0:46,0:46:99:0,123,1614 0/0:37,0:37:90.28:0,90,1178 0/0:38,0:38:96.29:0,96,1243 0/0:45,0:45:99:0,111,1429 0/0:25,0:25:69.20:0,69,874 0/0:145,0:145:99:0,370,4848 0/0:31,0:31:87.26:0,87,1109 0/0:47,0:47:99:0,129,1678 0/0:50,0:50:99:0,138,1783 0/0:47,0:47:99:0,120,1533 0/1:33,24:57:99:567,0,985 0/0:74,0:74:99:0,187,2433 0/0:37,0:37:96.31:0,96,1251 0/0:82,0:82:99:0,217,2948 0/0:35,0:35:93.31:0,93,1278 0/0:33,0:33:90.30:0,90,1239 0/0:50,0:50:99:0,132,1794 0/0:50,0:50:99:0,126,1654 0/0:51,0:51:99:0,132,1721 0/0:32,0:32:87.28:0,87,1134 0/0:35,0:35:96.31:0,96,1232 0/0:30,0:30:84.27:0,84,1075 0/0:63,0:63:99:0,157,2079 0/0:44,0:44:99:0,117,1504 0/0:44,0:44:99:0,120,1548 0/0:39,0:39:99:0,102,1326 0/0:27,0:27:69.23:0,69,915 0/0:63,0:63:99:0,156,2025 0/0:42,0:42:99:0,111,1442 0/0:44,0:44:99:0,123,1533 0/0:39,0:39:99:0,102,1314 0/0:42,0:42:99:0,114,1453 0/0:45,0:45:99:0,111,1457 16 75258617 . C T 5946.87 . AC=13;AF=0.155;AN=84;BaseQRankSum=-9.989;DP=1846;Dels=0.00;FS=24.342;HRun=0;HaplotypeScore=1.4804;InbreedingCoeff=-0.1831;MQ=59.19;MQ0=0;MQRankSum=0.298;QD=13.30;ReadPosRankSum=-0.421 GT:AD:DP:GQ:PL 0/1:13,12:25:99:342,0,373 0/1:12,16:28:99:383,0,289 0/0:23,0:23:63.19:0,63,763 0/0:101,0:102:99:0,238,3073 0/0:82,0:82:99:0,220,2743 0/0:58,0:58:99:0,150,1921 0/0:55,0:55:99:0,153,1963 0/0:55,0:55:99:0,132,1676 0/0:26,0:26:75.20:0,75,889 0/0:27,0:27:66.19:0,66,807 0/0:28,0:28:72.22:0,72,896 0/0:28,0:29:72.18:0,72,858 0/1:17,11:29:99:287,0,408 0/0:27,0:27:75.22:0,75,901 0/0:93,0:94:99:0,232,2729 0/0:23,0:23:69.18:0,69,815 0/1:19,20:39:99:532,0,535 0/0:31,0:31:87.24:0,87,1051 0/0:57,0:60:99:0,153,1794 0/0:71,1:73:99:0,184,2398 0/1:28,32:62:99:816,0,747 0/1:22,23:45:99:560,0,627 0/0:111,0:112:99:0,304,3860 0/0:42,0:42:99:0,99,1247 0/0:51,0:51:99:0,132,1711 0/0:49,0:49:99:0,120,1542 0/1:10,21:31:99:544,0,278 0/0:27,0:27:69.18:0,69,829 0/1:11,16:27:99:433,0,245 0/1:18,21:39:99:583,0,510 0/1:15,15:30:99:371,0,434 0/0:56,0:57:99:0,138,1731 0/0:43,0:44:99:0,105,1291 0/0:23,0:24:63.15:0,63,740 0/0:37,0:37:96.28:0,96,1178 0/0:41,0:42:99:0,108,1345 0/0:57,0:57:99:0,159,1877 0/0:30,0:30:75.21:0,75,894 0/1:18,17:35:99:452,0,504 0/1:19,16:35:99:454,0,490 0/1:14,8:22:99:191,0,320 0/0:33,0:33:93.25:0,93,1111 16 75485625 . C T 1274.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.962;DP=2953;Dels=0.00;FS=12.653;HRun=0;HaplotypeScore=2.6872;InbreedingCoeff=-0.0244;MQ=59.23;MQ0=0;MQRankSum=-0.472;QD=12.14;ReadPosRankSum=0.598 GT:AD:DP:GQ:PL 0/0:75,0:77:99:0,199,2310 0/0:62,0:62:99:0,168,2017 0/0:67,0:68:99:0,172,2115 0/0:85,0:85:99:0,220,2837 0/0:82,0:83:99:0,214,2734 0/0:72,0:72:99:0,187,2400 0/0:86,0:86:99:0,217,2746 0/0:106,0:107:99:0,286,3618 0/1:26,27:53:99:711,0,551 0/1:28,24:52:99:626,0,781 0/0:52,0:52:99:0,135,1632 0/0:49,0:49:99:0,126,1557 0/0:52,0:52:99:0,144,1691 0/0:52,0:52:99:0,126,1536 0/0:196,0:197:99:0,478,5895 0/0:47,0:47:99:0,135,1628 0/0:62,0:64:99:0,171,2053 0/0:59,0:59:99:0,159,1904 0/0:92,0:92:99:0,232,2757 0/0:90,0:91:99:0,232,2876 0/0:99,0:99:99:0,244,2960 0/0:51,0:51:99:0,138,1649 0/0:101,0:101:99:0,265,3385 0/0:62,0:62:99:0,175,2237 0/0:92,0:92:99:0,238,3113 0/0:84,0:84:99:0,214,2822 0/0:42,0:42:99:0,111,1356 0/0:55,0:56:99:0,144,1720 0/0:45,0:45:99:0,117,1423 0/0:58,0:58:99:0,144,1736 0/0:54,0:54:99:0,138,1699 0/0:94,0:94:99:0,244,2975 0/0:61,0:61:99:0,162,1943 0/0:59,0:59:99:0,162,1953 0/0:46,0:46:99:0,126,1483 0/0:69,0:69:99:0,177,2144 0/0:85,1:86:99:0,217,2598 0/0:67,0:67:99:0,193,2304 0/0:58,0:58:99:0,162,1957 0/0:52,0:52:99:0,132,1605 0/0:57,0:58:99:0,153,1860 0/0:58,0:59:99:0,165,2001 16 75669867 . T C 1045.80 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.591;DP=2023;Dels=0.00;FS=0.575;HRun=0;HaplotypeScore=0.7547;InbreedingCoeff=-0.0244;MQ=59.41;MQ0=0;MQRankSum=-0.054;QD=12.16;ReadPosRankSum=-1.729 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,117,1409 0/0:48,0:48:99:0,132,1592 0/0:29,0:29:87.25:0,87,1028 0/0:64,0:64:99:0,181,2200 0/0:71,0:73:99:0,190,2329 0/0:69,0:69:99:0,190,2393 0/0:46,0:46:99:0,132,1634 0/0:62,0:62:99:0,169,2077 0/0:29,0:29:81.25:0,81,986 0/0:36,0:36:96.30:0,96,1178 0/0:39,1:40:99:0,105,1291 0/0:43,0:43:99:0,126,1510 0/0:33,0:33:99:0,99,1182 0/0:31,0:31:87.26:0,87,1050 0/0:150,0:150:99:0,409,4891 0/0:29,0:29:87.27:0,87,1048 0/0:40,0:40:99:0,117,1417 0/0:42,0:42:99:0,123,1467 0/0:65,0:65:99:0,183,2175 0/0:57,2:59:99:0,159,1939 0/1:24,29:53:99:793,0,684 0/1:20,13:33:99:315,0,585 0/0:86,0:86:99:0,238,2912 0/0:44,0:44:99:0,126,1558 0/0:46,0:46:99:0,132,1624 0/0:63,0:63:99:0,178,2195 0/0:29,0:29:84.26:0,84,1016 0/0:41,0:41:99:0,120,1419 0/0:38,0:38:99:0,108,1324 0/0:40,0:40:99:0,108,1325 0/0:41,0:41:99:0,117,1417 0/0:59,0:59:99:0,159,1973 0/0:29,0:29:81.25:0,81,989 0/0:40,0:40:99:0,117,1416 0/0:34,0:35:99:0,99,1200 0/0:43,0:43:99:0,126,1478 0/0:46,0:46:99:0,123,1502 0/0:53,1:55:99:0,120,1720 0/0:44,0:44:99:0,126,1531 0/0:32,0:33:93.29:0,93,1140 0/0:40,0:40:99:0,117,1401 0/0:54,0:54:99:0,159,1928 16 76482747 . C G 1271.63 . AC=3;AF=0.036;AN=84;BaseQRankSum=-2.690;DP=1349;Dels=0.00;FS=10.702;HRun=1;HaplotypeScore=0.7333;InbreedingCoeff=-0.0370;MQ=59.19;MQ0=0;MQRankSum=0.407;QD=14.96;ReadPosRankSum=0.479 GT:AD:DP:GQ:PL 0/0:19,0:19:57.18:0,57,721 0/0:25,0:26:75.24:0,75,942 0/0:17,0:17:51.16:0,51,640 0/0:38,0:38:99:0,114,1539 0/0:28,0:28:81.27:0,81,1109 0/0:30,0:30:84.27:0,84,1138 0/0:20,0:20:57.16:0,57,754 0/0:32,0:32:87.29:0,87,1194 0/0:26,0:26:78.24:0,78,975 0/0:29,0:29:87.24:0,87,1081 0/1:10,9:19:99:246,0,294 0/0:30,0:30:84.26:0,84,1070 0/0:40,0:40:99:0,102,1341 0/0:33,0:33:90.29:0,90,1146 0/0:115,0:116:99:0,298,3831 0/0:17,0:17:45.15:0,45,582 0/0:29,0:29:75.24:0,75,979 0/0:26,0:26:75.23:0,75,948 0/0:55,0:55:99:0,147,1837 0/0:71,0:71:99:0,184,2339 0/0:31,0:32:84.27:0,84,1093 0/0:38,0:38:99:0,108,1370 0/0:38,0:38:99:0,102,1371 0/0:30,0:30:81.27:0,81,1120 0/0:38,0:38:99:0,105,1425 0/0:29,0:29:78.25:0,78,1047 0/0:16,0:16:48.15:0,48,591 0/0:29,0:29:75.24:0,75,971 0/0:21,0:21:57.18:0,57,732 0/0:26,0:26:69.22:0,69,890 0/0:17,0:17:48.15:0,48,611 0/0:30,0:30:87.27:0,87,1123 0/0:33,0:33:84.26:0,84,1075 0/0:32,0:32:90.29:0,90,1144 0/0:28,0:28:78.24:0,78,983 0/0:23,0:23:60.19:0,60,777 0/0:40,0:40:99:0,111,1395 0/0:24,0:24:63.20:0,63,802 0/1:17,16:33:99:469,0,502 0/0:26,0:26:75.24:0,75,955 0/0:31,0:31:84.26:0,84,1062 0/1:13,20:33:99:632,0,386 16 76486581 . A G 6263.83 . AC=6;AF=0.071;AN=84;BaseQRankSum=-2.745;DP=3215;DS;Dels=0.00;FS=0.268;HRun=5;HaplotypeScore=1.6985;InbreedingCoeff=-0.0769;MQ=59.39;MQ0=0;MQRankSum=-0.100;QD=12.31;ReadPosRankSum=-0.035 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,184,2280 0/0:62,0:62:99:0,162,2014 0/0:43,0:43:99:0,114,1453 0/0:100,0:100:99:0,271,3501 0/0:97,1:98:99:0,265,3407 0/0:97,0:98:99:0,256,3381 0/0:64,0:64:99:0,165,2150 0/0:90,0:90:99:0,235,3019 0/0:59,0:59:99:0,163,2008 0/0:65,0:65:99:0,181,2238 0/0:58,0:58:99:0,172,2105 0/0:65,0:65:99:0,184,2276 0/0:68,1:69:99:0,190,2376 0/0:42,0:42:99:0,120,1494 0/1:109,88:198:99:2235,0,2989 0/0:49,0:49:99:0,141,1750 0/1:40,29:69:99:761,0,1285 0/0:53,0:53:99:0,159,1942 0/0:136,2:138:99:0,325,4674 0/0:119,2:121:99:0,307,3855 0/0:114,0:114:99:0,316,3907 0/0:86,0:86:99:0,226,2800 0/0:117,0:117:99:0,310,4014 0/1:37,30:67:99:793,0,1169 0/1:38,43:82:99:1325,0,1111 0/0:64,0:65:99:0,178,2304 0/0:47,0:47:99:0,132,1646 0/0:57,1:58:99:0,169,2077 0/0:56,0:56:99:0,156,1963 0/0:63,0:63:99:0,163,2065 0/0:64,0:64:99:0,181,2258 0/0:110,0:110:99:0,292,3682 0/0:99,0:99:99:0,283,3470 0/0:62,0:62:99:0,178,2219 0/0:57,0:57:99:0,156,1956 0/0:68,0:68:99:0,181,2271 0/0:93,1:95:99:0,250,3076 0/0:72,1:73:99:0,193,2382 0/1:21,20:41:99:554,0,604 0/0:73,0:73:99:0,211,2584 0/0:61,0:61:99:0,169,2104 0/1:30,20:50:99:596,0,902 16 76486623 . G A 245.67 . 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A G 40086.82 . 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A T 14762.82 . AC=6;AF=0.071;AN=84;BaseQRankSum=12.519;DP=7139;DS;Dels=0.00;FS=0.334;HRun=2;HaplotypeScore=2.3720;InbreedingCoeff=-0.0769;MQ=59.59;MQ0=0;MQRankSum=-0.188;QD=12.52;ReadPosRankSum=-0.449 GT:AD:DP:GQ:PL 0/1:62,54:116:99:1449,0,1702 0/1:65,66:134:99:1773,0,1755 0/0:142,0:142:99:0,358,4445 0/0:242,0:242:99:0,629,7785 0/0:240,0:240:99:0,650,8053 0/1:137,101:238:99:2876,0,4082 0/0:246,0:246:99:0,635,8029 0/1:128,107:235:99:2869,0,3552 0/0:144,0:145:99:0,376,4615 0/0:112,0:112:99:0,307,3691 0/0:148,0:148:99:0,385,4706 0/0:122,0:123:99:0,313,3863 0/0:107,0:107:99:0,295,3585 0/0:131,0:131:99:0,352,4323 0/0:248,1:250:99:0,677,8077 0/0:104,0:104:99:0,271,3337 0/0:157,0:157:99:0,418,5129 0/0:123,0:123:99:0,328,3987 0/0:225,0:226:99:0,605,7331 0/0:240,0:240:99:0,623,7632 0/1:108,117:226:99:3400,0,2745 0/0:151,0:151:99:0,394,4802 0/0:248,0:248:99:0,653,8061 0/0:245,0:246:99:0,641,8064 0/0:245,0:245:99:0,632,7890 0/0:245,0:245:99:0,626,7912 0/0:91,0:91:99:0,253,3069 0/0:128,0:128:99:0,331,4057 0/0:142,0:143:99:0,379,4599 0/0:135,0:135:99:0,349,4311 0/0:136,0:136:99:0,364,4484 0/1:143,86:230:99:2396,0,3932 0/0:163,0:163:99:0,424,5202 0/0:136,0:136:99:0,382,4647 0/0:126,0:126:99:0,325,4014 0/0:156,0:156:99:0,427,5221 0/0:231,0:232:99:0,593,7351 0/0:156,0:156:99:0,406,4983 0/0:104,0:104:99:0,286,3451 0/0:133,0:133:99:0,358,4367 0/0:128,0:128:99:0,346,4224 0/0:122,0:122:99:0,328,4029 16 76587202 . T G 6208.56 . 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GTGCGCA G 307.54 . 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T G 278.81 . 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T C 7649.80 . AC=22;AF=0.262;AN=84;BaseQRankSum=-2.483;DP=1003;Dels=0.00;FS=6.256;HRun=1;HaplotypeScore=0.6777;InbreedingCoeff=0.0146;MQ=57.65;MQ0=0;MQRankSum=3.004;QD=15.58;ReadPosRankSum=-0.384 GT:AD:DP:GQ:PL 0/0:19,0:19:54.17:0,54,665 0/0:24,0:24:66.19:0,66,809 0/1:14,8:22:99:223,0,442 0/1:13,11:24:99:322,0,420 0/0:21,0:21:57.18:0,57,718 0/0:17,0:17:48.14:0,48,585 0/0:23,0:23:60.19:0,60,771 0/0:19,0:20:48.15:0,48,612 0/0:22,0:22:60.18:0,60,743 0/0:18,0:18:51.16:0,51,625 0/0:25,0:25:63.20:0,63,792 0/1:15,8:23:99:222,0,425 0/1:10,10:20:99:297,0,285 0/1:10,11:21:99:302,0,306 0/1:28,39:68:99:994,0,811 0/1:6,10:16:99:225,0,144 0/0:18,0:18:48.15:0,48,607 0/1:16,9:25:99:255,0,490 1/1:0,35:36:90.26:1083,90,0 0/1:25,25:50:99:679,0,736 0/0:47,1:49:99:0,135,1643 0/0:29,0:29:69.19:0,69,868 0/1:12,12:24:99:348,0,287 1/1:0,14:14:36.11:459,36,0 1/1:0,12:12:33.08:390,33,0 0/1:8,3:11:79.83:80,0,227 0/0:11,0:11:30.09:0,30,376 0/0:20,0:20:57.17:0,57,699 0/1:14,8:22:99:204,0,354 0/0:18,0:18:54.17:0,54,674 0/0:21,0:21:60.18:0,60,735 0/0:35,0:35:81.26:0,81,1054 0/0:31,0:31:78.24:0,78,981 0/0:19,0:19:54.16:0,54,666 0/1:8,15:23:99:388,0,201 0/0:14,0:14:39.12:0,39,484 0/1:22,22:44:99:621,0,561 0/1:9,10:19:99:300,0,277 0/1:8,9:17:99:259,0,244 0/0:19,0:19:51.16:0,51,646 0/0:21,0:21:57.18:0,57,724 0/0:17,0:18:51.16:0,51,628 16 77353973 . G T 25305.70 . 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G A 10035.95 . 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C T 4248.55 . 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T G 288.84 . 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T G 10049.50 . 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G A 72296.07 . 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G A 6499.29 . 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C G 268587.10 . 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C T 271.15 . 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C T 8201.41 . AC=26;AF=0.310;AN=84;BaseQRankSum=7.225;DP=870;Dels=0.00;FS=26.738;HRun=0;HaplotypeScore=0.7020;InbreedingCoeff=0.2193;MQ=58.90;MQ0=0;MQRankSum=-0.193;QD=19.91;ReadPosRankSum=2.267 GT:AD:DP:GQ:PL 0/0:24,0:24:63.16:0,63,719 0/1:10,10:20:99:270,0,281 1/1:0,13:13:39.12:473,39,0 1/1:1,18:19:25.52:624,26,0 0/1:13,7:21:99:208,0,399 0/0:15,0:15:42.11:0,42,521 0/0:6,0:6:18.05:0,18,207 0/0:10,0:10:30.09:0,30,369 0/1:16,3:19:47.93:48,0,428 0/1:10,10:20:99:311,0,290 1/1:0,14:14:39.12:486,39,0 0/0:18,0:18:48.12:0,48,551 0/0:17,0:17:51.14:0,51,594 0/0:21,0:21:57.16:0,57,671 0/1:26,27:53:99:830,0,729 0/1:10,7:17:99:190,0,282 0/0:15,0:15:42.11:0,42,478 0/0:28,0:28:75.22:0,75,882 0/1:11,20:32:99:601,0,253 1/1:0,56:56:99:1799,144,0 0/0:39,0:39:99:0,102,1205 0/0:39,0:39:99:0,108,1270 1/1:0,17:17:48.15:609,48,0 0/1:3,1:4:27.28:27,0,98 0/1:15,3:18:63.21:63,0,472 0/0:16,0:16:45.14:0,45,563 0/1:2,5:7:51.68:162,0,52 0/1:10,3:13:75.84:76,0,314 0/0:10,0:10:30.08:0,30,343 0/0:22,0:22:63.18:0,63,743 0/0:18,0:18:51.15:0,51,604 0/0:31,0:31:75.22:0,75,919 0/1:11,8:19:99:211,0,257 0/0:23,0:23:60.16:0,60,681 0/0:17,0:17:48.14:0,48,562 0/0:26,0:26:72.20:0,72,840 0/0:33,0:33:87.25:0,87,1044 0/0:19,0:19:51.10:0,51,570 0/0:11,0:11:30.08:0,30,344 0/1:11,7:18:99:209,0,261 0/1:3,7:10:66.46:234,0,66 1/1:0,22:22:63.18:768,63,0 16 81193358 . C G 472.53 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.313;DP=870;Dels=0.00;FS=1.924;HRun=0;HaplotypeScore=0.6012;InbreedingCoeff=-0.0265;MQ=58.88;MQ0=0;MQRankSum=-0.484;QD=11.81;ReadPosRankSum=-0.432 GT:AD:DP:GQ:PL 0/0:21,0:21:60.18:0,60,743 0/0:24,0:24:60.19:0,60,790 0/0:12,0:12:36.11:0,36,449 0/0:28,0:28:78.25:0,78,1043 0/0:18,1:19:8.15:0,8,580 0/0:12,0:12:27.09:0,27,356 0/0:7,0:7:18.06:0,18,240 0/0:10,0:10:24.08:0,24,330 0/0:13,0:13:36.10:0,36,442 0/0:18,0:19:51.16:0,51,648 0/0:14,0:14:39.13:0,39,508 0/0:21,0:21:54.17:0,54,702 0/0:15,0:15:45.14:0,45,564 0/0:11,0:11:33.10:0,33,406 0/0:67,0:68:99:0,172,2226 0/0:15,0:15:45.14:0,45,567 0/0:14,0:14:36.12:0,36,473 0/0:24,0:24:63.20:0,63,823 0/0:33,0:34:96.30:0,96,1210 0/0:39,0:39:99:0,108,1369 0/0:34,0:34:87.27:0,87,1103 0/0:35,0:35:99:0,99,1247 0/0:18,0:18:48.16:0,48,644 0/0:7,0:7:21.07:0,21,283 0/0:15,0:15:42.14:0,42,577 0/0:17,0:17:48.16:0,48,659 0/0:7,0:7:21.06:0,21,256 0/0:17,0:17:51.16:0,51,641 0/0:14,0:14:36.12:0,36,474 0/0:23,0:23:66.21:0,66,833 0/0:17,0:17:45.14:0,45,566 0/0:44,0:44:99:0,108,1403 0/0:25,0:25:63.20:0,63,801 0/1:14,9:23:99:249,0,437 0/1:8,9:17:99:286,0,236 0/0:18,0:18:51.15:0,51,635 0/0:25,0:25:66.21:0,66,851 0/0:21,0:21:57.18:0,57,735 0/0:19,0:19:51.16:0,51,650 0/0:21,0:21:57.18:0,57,729 0/0:14,0:14:36.11:0,36,448 0/0:19,0:19:57.18:0,57,723 16 81194382 . T C 44455.78 . AC=81;AF=0.964;AN=84;BaseQRankSum=-4.494;DP=1478;Dels=0.00;FS=0.923;HRun=1;HaplotypeScore=1.6093;InbreedingCoeff=-0.0371;MQ=59.08;MQ0=0;MQRankSum=0.373;QD=30.08;ReadPosRankSum=0.386 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1235,105,0 1/1:0,32:33:87.23:1007,87,0 1/1:0,35:35:96.25:1143,96,0 1/1:0,39:39:99:1347,108,0 1/1:0,31:31:90.27:1134,90,0 0/1:15,13:28:99:375,0,482 1/1:1,24:25:32.23:784,32,0 0/1:25,19:44:99:492,0,803 1/1:0,27:27:81.25:996,81,0 1/1:0,27:27:75.23:922,75,0 1/1:0,30:30:81.24:994,81,0 1/1:0,30:30:78.19:917,78,0 1/1:0,27:27:78.23:931,78,0 1/1:0,36:36:96.28:1162,96,0 1/1:0,90:90:99:2778,235,0 1/1:0,31:31:90.22:1018,90,0 1/1:0,36:36:99:1216,105,0 1/1:0,26:26:72.21:868,72,0 1/1:0,51:53:99:1781,153,0 1/1:0,73:74:99:2333,196,0 1/1:0,53:54:99:1743,147,0 1/1:0,32:32:81.23:965,81,0 1/1:0,35:35:93.26:1138,93,0 1/1:0,19:33:51.15:641,51,0 1/1:0,20:20:60.16:716,60,0 1/1:0,9:23:27.08:326,27,0 1/1:0,34:34:99:1176,102,0 1/1:0,36:36:99:1179,102,0 1/1:0,24:24:66.18:785,66,0 1/1:0,24:24:69.18:789,69,0 1/1:0,15:15:45.13:531,45,0 0/1:35,26:61:99:689,0,1008 1/1:0,46:46:99:1485,123,0 1/1:0,40:40:99:1300,108,0 1/1:0,32:32:87.24:1003,87,0 1/1:1,27:28:40.54:761,41,0 1/1:0,49:49:99:1589,135,0 1/1:0,27:28:69.15:753,69,0 1/1:0,36:36:96.23:1104,96,0 1/1:0,17:17:48.12:548,48,0 1/1:0,20:20:60.18:718,60,0 1/1:1,33:34:93.23:1083,93,0 16 81199468 . G C 1095.08 . AC=3;AF=0.036;AN=84;BaseQRankSum=-8.276;DP=1262;Dels=0.00;FS=6.453;HRun=0;HaplotypeScore=0.7345;InbreedingCoeff=-0.0370;MQ=58.32;MQ0=0;MQRankSum=1.841;QD=12.17;ReadPosRankSum=-0.516 GT:AD:DP:GQ:PL 0/0:21,0:21:57.17:0,57,703 0/0:26,0:27:75.23:0,75,935 0/0:17,0:17:48.14:0,48,584 0/0:60,0:60:99:0,150,2005 0/0:51,0:51:99:0,141,1842 0/0:36,0:36:93.28:0,93,1213 0/0:28,0:28:72.23:0,72,970 0/0:30,0:30:81.24:0,81,1058 0/0:18,0:18:51.16:0,51,641 0/0:21,0:21:57.17:0,57,722 0/0:23,0:23:69.20:0,69,843 0/0:34,0:34:90.27:0,90,1123 0/0:18,0:18:51.16:0,51,650 0/0:22,0:22:63.19:0,63,774 0/0:55,0:56:99:0,135,1709 0/0:21,0:21:54.17:0,54,683 0/0:24,1:25:66.20:0,66,808 0/1:12,12:24:99:305,0,325 0/1:19,20:40:99:424,0,529 0/0:53,0:53:99:0,138,1720 0/0:40,0:40:99:0,108,1315 0/0:34,0:34:96.29:0,96,1196 0/0:70,0:70:99:0,169,2266 0/0:42,0:42:99:0,102,1372 0/0:35,0:35:90.29:0,90,1198 0/0:36,0:36:93.30:0,93,1240 0/0:17,0:17:51.16:0,51,644 0/0:19,0:19:51.15:0,51,618 0/0:17,0:17:48.15:0,48,598 0/0:28,0:28:81.24:0,81,1002 0/0:26,0:26:72.22:0,72,895 0/0:48,0:48:99:0,132,1672 0/0:20,0:20:57.18:0,57,720 0/0:18,0:18:51.13:0,51,608 0/0:27,0:27:72.22:0,72,883 0/0:14,0:14:39.11:0,39,477 0/0:33,0:33:93.23:0,93,1096 0/0:23,0:23:63.20:0,63,793 0/1:9,17:26:99:441,0,248 0/0:25,0:25:69.22:0,69,868 0/0:18,0:18:54.17:0,54,669 0/0:21,0:21:63.17:0,63,761 16 81199520 . T C 9514.32 . AC=53;AF=0.631;AN=84;BaseQRankSum=-7.428;DP=582;Dels=0.00;FS=0.911;HRun=0;HaplotypeScore=0.2676;InbreedingCoeff=0.0294;MQ=55.98;MQ0=0;MQRankSum=-2.886;QD=20.64;ReadPosRankSum=-1.500 GT:AD:DP:GQ:PL 0/1:12,7:19:99:160,0,330 0/1:8,8:16:99:163,0,236 0/1:7,3:10:75.71:76,0,181 0/0:20,0:20:60.16:0,60,701 0/0:30,0:32:87.24:0,87,996 1/1:0,12:12:36.09:398,36,0 1/1:0,16:16:48.14:567,48,0 0/1:2,7:11:6.53:210,0,7 0/0:9,0:10:24.07:0,24,276 0/0:11,0:11:33.08:0,33,381 0/1:6,7:13:99:193,0,170 1/1:0,18:18:54.14:589,54,0 0/1:5,6:11:99:149,0,149 1/1:0,11:11:33.09:372,33,0 0/1:8,12:20:99:281,0,230 0/1:7,2:9:35:35,0,224 1/1:0,7:7:15.03:157,15,0 1/1:0,5:5:15.04:158,15,0 1/1:0,17:17:51.14:568,51,0 1/1:0,29:29:78.15:804,78,0 0/1:11,7:18:99:139,0,297 0/1:9,4:13:97.65:98,0,219 0/0:34,0:34:99:0,99,1153 0/1:5,3:8:71.99:72,0,161 0/1:6,5:11:99:106,0,168 1/1:0,14:14:39.11:449,39,0 0/0:14,0:14:36.09:0,36,427 0/1:5,5:11:99:129,0,144 0/1:3,1:4:17.59:18,0,88 1/1:0,11:11:33.08:346,33,0 1/1:0,11:11:33.04:333,33,0 1/1:0,14:14:39.07:405,39,0 1/1:0,18:18:45.11:494,45,0 1/1:0,8:8:21.05:224,21,0 0/1:3,10:13:71.18:254,0,71 1/1:0,4:4:9.02:98,9,0 1/1:0,20:20:54.13:578,54,0 0/1:7,6:13:99:156,0,181 1/1:0,15:15:45.05:453,45,0 0/1:7,3:10:55.84:56,0,167 0/1:3,5:8:85.37:109,0,85 0/1:7,5:13:99:118,0,200 16 81199538 . T C 2836.97 . AC=28;AF=0.333;AN=84;BaseQRankSum=-4.431;DP=485;Dels=0.00;FS=1.441;HRun=0;HaplotypeScore=0.5519;InbreedingCoeff=-0.0754;MQ=53.69;MQ0=0;MQRankSum=-12.192;QD=11.53;ReadPosRankSum=1.444 GT:AD:DP:GQ:PL 0/1:11,7:18:99:138,0,333 0/0:13,0:13:36.09:0,36,416 0/0:13,0:13:39.12:0,39,469 0/0:14,0:14:39.10:0,39,455 0/0:24,0:24:60.17:0,60,696 1/1:0,6:6:18.02:189,18,0 0/1:8,3:11:60.29:60,0,256 0/1:5,6:11:99:146,0,112 0/0:12,0:12:24.04:0,24,268 0/0:12,0:12:30.09:0,30,349 0/0:10,0:10:30.08:0,30,345 0/0:10,0:10:27.08:0,27,310 0/0:11,0:11:33.07:0,33,372 0/1:6,3:9:78.38:78,0,94 0/0:23,0:23:63.16:0,63,718 0/1:8,2:10:36.95:37,0,209 0/1:3,2:5:27.42:27,0,30 0/1:5,2:7:34.26:34,0,146 0/1:6,10:16:99:181,0,147 1/1:0,24:24:66.15:687,66,0 0/0:18,0:18:45.14:0,45,547 0/1:8,4:12:97.64:98,0,227 0/0:23,0:23:63.17:0,63,736 0/0:9,0:9:24.05:0,24,265 0/1:5,2:7:44.87:45,0,157 0/0:8,0:8:21.06:0,21,243 0/0:15,0:15:45.11:0,45,503 0/1:4,3:7:77.37:77,0,117 0/1:2,1:3:28.77:29,0,61 0/1:7,5:12:92.90:93,0,211 0/1:6,4:10:77.69:106,0,78 0/1:8,2:10:6.35:6,0,268 0/1:9,4:13:82.12:82,0,271 0/1:2,2:4:50.05:50,0,62 0/0:8,0:8:21.06:0,21,247 1/1:0,4:4:9.02:93,9,0 1/1:0,16:16:45.12:488,45,0 0/1:7,3:10:61.73:62,0,176 0/1:3,5:8:84.08:120,0,84 0/0:8,0:8:21.06:0,21,249 0/0:8,0:8:24.07:0,24,274 0/1:8,5:13:99:114,0,211 16 81199544 . G A 3028.38 . AC=27;AF=0.321;AN=84;BaseQRankSum=5.842;DP=477;Dels=0.00;FS=3.981;HRun=2;HaplotypeScore=0.4797;InbreedingCoeff=-0.0401;MQ=53.20;MQ0=0;MQRankSum=-14.520;QD=12.78;ReadPosRankSum=0.599 GT:AD:DP:GQ:PL 0/1:9,6:15:99:130,0,229 0/0:12,0:12:30.06:0,30,326 0/0:12,0:12:36.06:0,36,390 0/0:12,0:12:30.09:0,30,367 0/0:23,1:24:66.18:0,66,791 1/1:0,9:9:27.06:291,27,0 0/1:8,3:11:74.42:74,0,217 0/1:3,3:6:20.47:88,0,20 0/0:12,0:12:21.04:0,21,232 0/0:9,0:9:21.06:0,21,237 0/0:11,0:11:27.08:0,27,326 0/0:8,0:8:21.06:0,21,248 0/0:12,0:12:33.08:0,33,369 0/1:5,2:7:54.82:58,0,55 0/0:23,0:23:57.12:0,57,617 0/1:9,2:11:42.81:43,0,175 0/1:2,4:6:18.39:117,0,18 0/1:6,2:8:41.88:42,0,160 0/1:6,8:14:99:198,0,139 1/1:0,20:20:60.17:669,60,0 0/0:18,0:19:45.10:0,45,481 0/1:9,4:13:97.65:98,0,223 0/0:22,0:22:57.16:0,57,687 0/0:9,0:9:24.06:0,24,287 0/1:4,2:6:48.81:49,0,133 0/0:7,0:7:15.03:0,15,168 0/0:13,0:13:39.10:0,39,438 0/1:5,3:8:79.25:79,0,100 0/0:3,0:3:9.02:0,9,97 0/1:6,5:11:99:104,0,168 0/1:5,3:8:48.03:48,0,81 0/1:9,2:11:7.50:7,0,222 0/1:13,4:17:93.28:93,0,300 0/1:2,3:5:60.51:85,0,61 0/0:11,0:11:27.08:0,27,315 1/1:0,4:4:12.03:134,12,0 1/1:0,16:16:45.12:502,45,0 0/1:6,2:9:15.40:15,0,142 0/1:2,7:9:37.49:172,0,37 0/0:11,0:11:21.05:0,21,222 0/0:10,0:10:27.06:0,27,310 0/1:8,5:13:99:134,0,170 16 81199554 . C T 2630.07 . AC=27;AF=0.321;AN=84;BaseQRankSum=-8.601;DP=485;Dels=0.00;FS=4.488;HRun=0;HaplotypeScore=0.3336;InbreedingCoeff=-0.0445;MQ=54.01;MQ0=0;MQRankSum=-12.926;QD=11.39;ReadPosRankSum=3.500 GT:AD:DP:GQ:PL 0/1:10,2:12:29.96:30,0,308 0/0:14,0:14:36.12:0,36,468 0/0:10,0:10:30.08:0,30,363 0/0:11,0:11:30.10:0,30,410 0/0:30,0:30:81.25:0,81,1082 1/1:0,9:9:27.07:298,27,0 0/1:7,2:9:41.86:42,0,230 0/1:3,5:8:99:147,0,101 0/0:16,0:16:45.14:0,45,568 0/0:10,0:10:27.08:0,27,343 0/0:8,0:8:24.07:0,24,292 0/0:6,0:6:18.06:0,18,225 0/0:11,0:11:33.10:0,33,415 0/1:6,2:8:45.81:46,0,161 0/0:27,0:27:75.24:0,75,956 0/1:9,3:12:68.65:69,0,309 0/1:3,6:9:80.92:174,0,81 0/1:9,2:11:36.79:37,0,272 0/1:6,6:12:99:164,0,188 1/1:0,19:19:57.16:637,57,0 0/0:29,0:29:84.26:0,84,1058 0/1:11,4:15:89.32:89,0,348 0/0:16,0:16:48.15:0,48,651 0/0:9,0:9:27.09:0,27,370 0/1:2,2:4:58.47:58,0,71 0/0:8,0:8:24.08:0,24,314 0/0:10,0:10:27.08:0,27,332 0/1:7,1:8:12.37:12,0,213 0/0:3,0:3:9.03:0,9,113 0/1:9,3:12:64.19:64,0,305 0/1:4,3:8:79.24:79,0,131 0/1:9,3:12:69.90:70,0,273 0/1:11,3:14:53.39:53,0,363 0/1:1,3:4:26.54:88,0,27 0/0:12,0:12:33.10:0,33,416 1/1:0,5:5:12.03:127,12,0 1/1:0,11:11:33.09:368,33,0 0/1:7,2:9:39.79:40,0,224 0/1:3,5:8:78.82:108,0,79 0/0:13,0:13:33.11:0,33,431 0/0:11,0:11:30.09:0,30,379 0/1:10,2:12:33.77:34,0,303 16 81199555 . A G 2698.02 . AC=27;AF=0.321;AN=84;BaseQRankSum=5.203;DP=476;Dels=0.00;FS=5.310;HRun=1;HaplotypeScore=0.3336;InbreedingCoeff=-0.0425;MQ=53.95;MQ0=0;MQRankSum=-13.173;QD=11.83;ReadPosRankSum=3.368 GT:AD:DP:GQ:PL 0/1:10,2:12:25.03:25,0,307 0/0:14,0:14:36.11:0,36,453 0/0:10,0:10:30.09:0,30,370 0/0:11,0:11:30.10:0,30,381 0/0:28,0:28:78.25:0,78,1001 1/1:0,9:9:27.07:301,27,0 0/1:7,2:9:36.04:36,0,218 0/1:3,5:8:89.21:144,0,89 0/0:16,0:16:45.14:0,45,561 0/0:10,0:10:27.08:0,27,333 0/0:7,0:7:21.06:0,21,254 0/0:6,0:6:18.06:0,18,224 0/0:11,0:11:33.10:0,33,408 0/1:4,3:7:48.81:49,0,131 0/0:28,0:28:75.23:0,75,921 0/1:9,3:12:68.65:69,0,301 0/1:3,6:9:81.13:174,0,81 0/1:9,2:11:33.93:34,0,271 0/1:6,6:12:99:165,0,177 1/1:0,19:19:57.16:641,57,0 0/0:29,0:29:84.22:0,84,1017 0/1:10,4:14:96.75:97,0,328 0/0:16,0:16:45.14:0,45,572 0/0:9,0:9:27.08:0,27,333 0/1:2,2:4:64.10:68,0,64 0/0:8,0:8:24.08:0,24,312 0/0:9,0:9:24.07:0,24,290 0/1:7,1:8:12.39:12,0,183 0/0:3,0:3:9.03:0,9,110 0/1:9,3:12:64.19:64,0,292 0/1:4,3:7:79.24:79,0,128 0/1:9,3:12:70.74:71,0,276 0/1:11,3:14:61.72:62,0,351 0/1:1,3:4:25.76:88,0,26 0/0:12,0:12:33.10:0,33,412 1/1:0,5:5:15.03:157,15,0 1/1:0,13:13:36.10:401,36,0 0/1:6,2:8:42.79:43,0,198 0/1:3,4:7:89.18:89,0,93 0/0:11,0:11:30.10:0,30,382 0/0:10,0:10:27.09:0,27,345 0/1:10,2:12:33.77:34,0,303 16 81208515 . G A 15625.58 . AC=22;AF=0.262;AN=84;BaseQRankSum=-26.509;DP=2126;Dels=0.00;FS=4.186;HRun=0;HaplotypeScore=1.0889;InbreedingCoeff=0.0147;MQ=59.18;MQ0=0;MQRankSum=2.199;QD=17.06;ReadPosRankSum=-1.048 GT:AD:DP:GQ:PL 0/1:26,32:58:99:848,0,660 0/0:41,0:41:99:0,108,1374 0/0:37,0:37:99:0,102,1298 0/0:72,0:72:99:0,196,2623 0/0:58,0:58:99:0,154,2117 0/0:48,0:48:99:0,111,1537 0/0:39,0:39:99:0,102,1354 0/0:57,0:57:99:0,157,2079 0/0:38,0:38:99:0,108,1354 0/0:43,0:43:99:0,117,1470 0/0:43,0:43:99:0,117,1459 0/0:51,0:51:99:0,129,1648 0/0:47,0:47:99:0,126,1605 0/1:21,17:38:99:451,0,583 0/0:136,0:137:99:0,337,4307 0/1:10,20:30:99:558,0,284 0/1:24,21:45:99:545,0,739 0/1:22,21:43:99:516,0,625 0/1:38,33:71:99:807,0,1132 1/1:0,74:74:99:2349,196,0 0/0:81,0:81:99:0,217,2709 0/1:16,25:41:99:670,0,496 0/0:75,0:75:99:0,190,2558 0/0:49,0:49:99:0,129,1734 0/1:24,21:45:99:472,0,730 0/0:52,0:52:99:0,138,1817 0/0:29,0:29:84.27:0,84,1064 0/1:23,25:49:99:695,0,653 0/0:24,0:24:63.20:0,63,810 0/1:21,26:47:99:731,0,552 0/1:26,16:42:99:350,0,813 0/0:59,0:59:99:0,150,1929 0/1:19,30:49:99:762,0,556 0/1:25,26:51:99:741,0,663 0/0:51,0:51:99:0,141,1783 1/1:0,50:50:99:1650,141,0 1/1:0,58:59:99:1849,156,0 0/1:18,17:35:99:415,0,547 0/1:24,21:45:99:547,0,754 0/0:38,0:38:99:0,108,1366 0/0:41,0:41:99:0,114,1420 0/1:20,24:44:99:671,0,545 16 81211444 . C A 2407.89 . AC=2;AF=0.024;AN=84;BaseQRankSum=-10.789;DP=4427;DS;Dels=0.00;FS=8.600;HRun=0;HaplotypeScore=2.5460;InbreedingCoeff=-0.0244;MQ=59.22;MQ0=0;MQRankSum=0.032;QD=11.25;ReadPosRankSum=0.470 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,178,2228 0/0:67,0:67:99:0,181,2287 0/0:55,0:55:99:0,153,1954 0/0:232,0:232:99:0,623,8298 0/0:182,0:182:99:0,488,6538 0/0:140,0:140:99:0,376,5010 0/0:113,0:113:99:0,307,4097 0/0:130,0:130:99:0,340,4525 0/0:72,0:72:99:0,205,2584 0/0:52,0:52:99:0,129,1582 0/0:80,1:81:99:0,223,2811 0/0:61,0:61:99:0,159,2014 0/0:66,0:66:99:0,175,2207 0/0:84,0:84:99:0,229,2880 0/0:244,1:245:99:0,644,8145 0/0:71,0:71:99:0,199,2448 0/0:67,0:67:99:0,193,2381 0/0:68,0:68:99:0,193,2378 0/0:171,2:173:99:0,427,5332 0/0:173,0:173:99:0,451,5761 0/0:176,0:177:99:0,457,5694 0/0:121,0:122:99:0,316,4037 0/0:221,1:222:99:0,557,7966 0/1:55,49:104:99:1305,0,1722 0/1:67,43:110:99:1165,0,2152 0/0:164,0:164:99:0,421,5587 0/0:56,0:56:99:0,150,1911 0/0:70,0:70:99:0,196,2391 0/0:75,0:75:99:0,202,2571 0/0:69,0:69:99:0,190,2391 0/0:62,0:62:99:0,169,2145 0/0:158,0:158:99:0,418,5279 0/0:107,0:107:99:0,277,3539 0/0:62,0:62:99:0,184,2297 0/0:72,0:72:99:0,202,2509 0/0:81,0:81:99:0,223,2799 0/0:170,0:170:99:0,436,5452 0/0:82,0:82:99:0,223,2818 0/0:64,0:64:99:0,190,2330 0/0:66,0:66:99:0,190,2343 0/0:65,0:65:99:0,178,2201 0/0:72,0:72:99:0,199,2498 16 81211496 . C A 13918.64 . AC=12;AF=0.143;AN=84;BaseQRankSum=-21.203;DP=3374;DS;Dels=0.00;FS=8.687;HRun=0;HaplotypeScore=1.9842;InbreedingCoeff=-0.1667;MQ=59.42;MQ0=0;MQRankSum=2.837;QD=13.26;ReadPosRankSum=-0.218 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,141,1749 0/0:56,0:56:99:0,153,1933 0/0:53,0:53:99:0,147,1898 0/0:193,0:193:99:0,524,6843 0/1:84,90:175:99:2495,0,2396 0/1:69,55:124:99:1446,0,2088 0/0:93,0:93:99:0,238,3159 0/1:35,45:81:99:1269,0,1044 0/0:53,0:53:99:0,153,1934 0/0:42,0:43:99:0,126,1549 0/0:71,0:71:99:0,190,2420 0/0:48,0:48:99:0,132,1680 0/0:51,0:51:99:0,138,1751 0/0:60,1:61:99:0,143,2046 0/1:88,116:205:99:3055,0,2116 0/1:29,22:51:99:605,0,896 0/0:66,0:66:99:0,172,2177 0/1:31,20:52:99:513,0,876 0/1:58,45:104:99:1139,0,1686 0/0:117,0:117:99:0,304,3876 0/0:118,1:119:99:0,310,3839 0/0:97,1:98:99:0,268,3373 0/0:195,0:195:99:0,506,6793 0/0:67,1:68:99:0,160,2397 0/0:92,0:92:99:0,253,3300 0/0:87,0:87:99:0,241,3186 0/0:39,1:40:81.72:0,82,1333 0/1:25,26:51:99:721,0,704 0/1:20,17:37:99:435,0,587 0/0:52,0:52:99:0,150,1873 0/0:49,0:49:99:0,138,1746 0/0:112,0:112:99:0,286,3617 0/1:46,35:81:99:905,0,1311 0/0:48,0:48:99:0,141,1773 0/0:60,1:61:99:0,135,1975 0/0:67,0:67:99:0,193,2419 0/0:120,0:121:99:0,313,3828 0/0:55,1:56:99:0,124,1869 0/0:59,0:59:99:0,150,1858 0/1:21,25:46:99:685,0,591 0/1:19,24:43:99:651,0,510 0/0:46,0:46:99:0,129,1596 16 81211548 . G A 10182.92 . AC=12;AF=0.143;AN=84;BaseQRankSum=-17.802;DP=2308;Dels=0.00;FS=12.568;HRun=1;HaplotypeScore=1.3656;InbreedingCoeff=-0.1667;MQ=59.07;MQ0=0;MQRankSum=1.253;QD=13.65;ReadPosRankSum=2.088 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,108,1355 0/0:33,0:33:99:0,99,1221 0/0:32,1:33:57.79:0,58,1095 0/0:134,0:134:99:0,364,4820 0/1:64,46:110:99:1256,0,2099 0/1:41,45:86:99:1383,0,1234 0/0:55,0:55:99:0,154,2074 0/1:30,32:62:99:955,0,941 0/0:33,0:33:93.29:0,93,1173 0/0:33,0:33:99:0,99,1225 0/0:42,0:42:99:0,114,1458 0/0:25,0:25:72.22:0,72,895 0/0:33,0:33:96.29:0,96,1195 0/0:45,0:45:99:0,132,1677 0/1:71,57:129:99:1536,0,2140 0/1:20,22:42:99:630,0,596 0/0:33,0:33:90.27:0,90,1133 0/1:24,15:39:99:428,0,761 0/1:46,30:76:99:815,0,1371 0/0:74,0:75:99:0,208,2655 0/0:79,0:79:99:0,220,2770 0/0:51,0:51:99:0,147,1847 0/0:108,0:108:99:0,289,3879 0/0:60,0:60:99:0,159,2099 0/0:65,0:65:99:0,175,2355 0/0:76,0:76:99:0,214,2834 0/0:32,0:32:90.29:0,90,1151 0/1:14,26:40:99:776,0,357 0/1:16,18:34:99:540,0,411 0/0:44,0:44:99:0,126,1602 0/0:38,0:38:99:0,111,1412 0/0:68,0:68:99:0,193,2394 0/1:27,31:58:99:877,0,796 0/0:34,0:34:96.29:0,96,1207 0/0:39,0:39:99:0,108,1349 0/0:57,0:57:99:0,162,2044 0/0:62,0:62:99:0,178,2210 0/0:50,0:50:99:0,147,1800 0/0:42,0:42:99:0,123,1542 0/1:23,16:39:99:442,0,689 0/1:12,19:31:99:544,0,349 0/0:42,0:42:99:0,117,1466 16 81211570 . T C 542.91 . AC=1;AF=0.012;AN=84;BaseQRankSum=5.097;DP=2018;Dels=0.00;FS=3.744;HRun=0;HaplotypeScore=0.9045;InbreedingCoeff=-0.0120;MQ=59.04;MQ0=0;MQRankSum=0.377;QD=7.87;ReadPosRankSum=-0.025 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,114,1314 0/0:37,0:37:99:0,99,1140 0/0:22,0:22:63.19:0,63,752 0/0:110,0:110:99:0,298,3533 0/0:75,0:75:99:0,217,2537 0/0:71,0:71:99:0,199,2441 0/0:44,0:44:99:0,117,1432 0/0:64,0:64:99:0,181,2146 0/0:34,0:34:93.27:0,93,1091 0/0:28,0:28:84.25:0,84,978 0/0:35,0:35:96.28:0,96,1137 0/0:23,0:23:66.20:0,66,793 0/0:26,0:26:78.22:0,78,903 0/0:38,0:38:99:0,105,1233 0/0:107,0:107:99:0,292,3441 0/0:44,0:44:99:0,126,1448 0/0:39,0:39:99:0,108,1247 0/0:36,0:36:99:0,105,1236 0/0:63,0:63:99:0,178,2105 0/1:48,21:69:99:589,0,1372 0/0:71,0:71:99:0,193,2347 0/0:51,0:51:99:0,147,1715 0/0:85,0:85:99:0,238,2838 0/0:43,0:43:99:0,123,1471 0/0:51,0:51:99:0,138,1676 0/0:66,0:66:99:0,181,2153 0/0:37,0:37:99:0,105,1222 0/0:41,0:41:99:0,114,1340 0/0:25,0:25:69.21:0,69,825 0/0:42,0:42:99:0,120,1408 0/0:37,0:37:99:0,108,1274 0/0:52,0:52:99:0,147,1736 0/0:48,0:48:99:0,138,1599 0/0:35,0:35:99:0,99,1194 0/0:25,0:25:66.20:0,66,798 0/0:56,0:56:99:0,156,1824 0/0:56,0:56:99:0,159,1868 0/0:45,0:45:99:0,135,1570 0/0:42,0:42:99:0,117,1398 0/0:39,0:39:99:0,111,1323 0/0:32,0:32:93.27:0,93,1081 0/0:32,0:32:90.28:0,90,1090 16 81211587 . T C 3028.54 . AC=4;AF=0.048;AN=84;BaseQRankSum=-7.074;DP=1705;Dels=0.00;FS=1.956;HRun=0;HaplotypeScore=0.9967;InbreedingCoeff=-0.0500;MQ=59.14;MQ0=0;MQRankSum=0.301;QD=12.94;ReadPosRankSum=-0.244 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,108,1328 0/0:29,0:29:84.25:0,84,1015 0/0:19,0:19:57.18:0,57,691 0/0:83,0:83:99:0,235,2888 0/0:58,0:58:99:0,166,2067 0/1:24,33:57:99:994,0,660 0/0:38,0:38:99:0,108,1371 0/1:27,28:55:99:786,0,750 0/0:24,0:24:69.21:0,69,827 0/0:26,0:26:78.23:0,78,906 0/0:29,0:29:81.21:0,81,968 0/0:24,0:24:66.20:0,66,797 0/0:17,0:17:48.14:0,48,567 0/0:32,0:32:84.25:0,84,1041 0/1:51,36:87:99:849,0,1388 0/1:15,20:35:99:487,0,438 0/0:36,0:36:99:0,99,1181 0/0:30,0:30:84.23:0,84,1011 0/0:54,0:54:99:0,156,1915 0/0:63,0:63:99:0,178,2155 0/0:62,0:62:99:0,163,2044 0/0:45,0:45:99:0,126,1536 0/0:69,0:69:99:0,202,2492 0/0:38,0:38:99:0,105,1315 0/0:51,0:51:99:0,144,1776 0/0:49,0:49:99:0,132,1659 0/0:34,0:34:93.29:0,93,1163 0/0:37,0:37:96.27:0,96,1159 0/0:20,0:20:57.13:0,57,661 0/0:39,0:39:99:0,114,1366 0/0:37,0:37:99:0,102,1266 0/0:43,0:43:99:0,126,1535 0/0:44,0:44:99:0,120,1462 0/0:30,0:30:84.25:0,84,1021 0/0:17,0:17:45.13:0,45,547 0/0:44,0:44:99:0,126,1522 0/0:56,0:56:99:0,150,1836 0/0:33,0:33:96.30:0,96,1172 0/0:38,0:38:99:0,108,1284 0/0:32,0:32:90.28:0,90,1128 0/0:28,0:28:78.21:0,78,934 0/0:24,0:24:69.21:0,69,847 16 81224271 . C G 1154.79 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.633;DP=6239;DS;Dels=0.00;FS=6.118;HRun=0;HaplotypeScore=2.5716;InbreedingCoeff=-0.0120;MQ=59.50;MQ0=0;MQRankSum=0.076;QD=9.96;ReadPosRankSum=-1.386 GT:AD:DP:GQ:PL 0/0:90,0:90:99:0,238,2956 0/0:109,0:109:99:0,292,3540 0/0:100,0:100:99:0,256,3260 0/0:250,0:250:99:0,629,8523 0/0:223,0:223:99:0,572,7781 0/0:227,0:227:99:0,566,7739 0/0:178,0:178:99:0,463,6270 0/0:182,1:183:99:0,431,6270 0/0:106,0:107:99:0,283,3598 0/0:109,0:110:99:0,280,3523 0/0:96,0:96:99:0,271,3373 0/0:99,0:99:99:0,271,3381 0/0:100,0:100:99:0,259,3266 0/0:103,0:103:99:0,283,3512 0/0:243,0:245:99:0,653,8170 0/0:88,0:88:99:0,229,2895 0/1:67,49:116:99:1201,0,1960 0/0:112,0:113:99:0,304,3840 0/0:246,0:246:99:0,665,8297 0/0:248,0:248:99:0,641,8162 0/0:226,0:226:99:0,542,6856 0/0:136,0:136:99:0,343,4380 0/0:250,0:250:99:0,659,9043 0/0:193,0:193:99:0,488,6671 0/0:215,0:216:99:0,566,7675 0/0:212,0:212:99:0,518,7024 0/0:94,0:94:99:0,244,3077 0/0:125,0:125:99:0,340,4234 0/0:97,0:97:99:0,253,3223 0/0:104,0:104:99:0,283,3553 0/0:81,0:81:99:0,232,2883 0/0:211,0:211:99:0,557,7027 0/0:142,0:142:99:0,358,4553 0/0:115,0:116:99:0,301,3786 0/0:102,0:102:99:0,286,3520 0/0:126,0:126:99:0,346,4354 0/0:214,0:214:99:0,542,6866 0/0:101,0:101:99:0,271,3336 0/0:116,0:116:99:0,307,3885 0/0:123,0:123:99:0,340,4211 0/0:100,0:100:99:0,286,3543 0/0:123,0:123:99:0,334,4115 16 81248716 . C T 2341.56 . AC=17;AF=0.202;AN=84;BaseQRankSum=-0.571;DP=546;Dels=0.00;FS=0.923;HRun=0;HaplotypeScore=0.4633;InbreedingCoeff=-0.1174;MQ=58.76;MQ0=0;MQRankSum=1.253;QD=11.26;ReadPosRankSum=-2.249 GT:AD:DP:GQ:PL 0/1:5,7:12:99:211,0,145 0/1:7,7:14:99:173,0,216 0/0:8,0:8:24.07:0,24,281 0/0:13,1:14:3.85:0,4,396 0/0:18,0:18:54.17:0,54,682 0/0:16,0:16:48.15:0,48,603 0/0:14,0:14:33.11:0,33,440 0/0:11,0:11:27.09:0,27,347 0/0:8,0:8:24.07:0,24,274 0/1:5,7:12:99:217,0,146 0/0:10,0:10:27.06:0,27,280 0/0:8,0:8:24.04:0,24,244 0/0:10,0:10:30.09:0,30,360 0/1:10,6:16:99:168,0,304 0/0:38,0:38:99:0,105,1203 0/1:7,3:10:38.76:39,0,231 0/0:9,0:9:24.07:0,24,282 0/0:10,0:11:27.08:0,27,322 0/0:10,0:11:27.08:0,27,311 0/1:12,4:16:97.30:97,0,338 0/0:18,0:18:51.12:0,51,597 0/1:6,4:10:99:101,0,180 0/1:16,9:25:99:245,0,534 0/0:13,0:13:33.07:0,33,391 0/0:10,0:10:27.06:0,27,319 0/0:10,0:10:30.07:0,30,372 0/1:2,4:6:21.93:124,0,22 0/0:13,0:13:36.10:0,36,420 0/1:7,8:15:99:236,0,166 0/1:7,5:12:99:131,0,199 1/1:0,5:5:15.04:174,15,0 0/0:21,0:21:63.17:0,63,719 0/0:8,0:8:24.06:0,24,266 0/1:10,8:18:99:232,0,307 0/0:8,0:8:24.04:0,24,257 0/1:5,4:9:99:125,0,129 0/0:17,0:17:51.12:0,51,549 0/1:12,5:17:98.08:98,0,323 0/0:11,0:11:30.06:0,30,332 0/0:10,0:10:30.08:0,30,336 0/0:13,0:13:36.10:0,36,416 0/1:6,5:11:99:139,0,159 16 81248745 . A G 2897.03 . AC=19;AF=0.226;AN=84;BaseQRankSum=-5.697;DP=586;Dels=0.00;FS=2.424;HRun=0;HaplotypeScore=0.8380;InbreedingCoeff=-0.0338;MQ=58.46;MQ0=0;MQRankSum=-1.232;QD=13.73;ReadPosRankSum=-1.005 GT:AD:DP:GQ:PL 0/0:12,0:12:27.08:0,27,348 0/0:13,0:13:36.11:0,36,443 0/0:6,0:6:18.06:0,18,218 0/0:24,0:24:60.19:0,60,760 0/0:22,0:22:57.18:0,57,729 0/0:19,0:19:45.14:0,45,582 0/0:18,0:18:45.14:0,45,578 0/0:19,0:19:51.16:0,51,630 0/1:4,7:11:99:198,0,115 0/1:8,7:15:99:203,0,195 0/0:8,0:8:24.04:0,24,266 0/1:3,5:8:81.67:152,0,82 0/0:13,0:13:33.10:0,33,409 0/1:8,4:12:67.32:67,0,261 0/0:45,0:46:99:0,111,1365 0/0:12,0:12:36.11:0,36,438 0/0:6,0:6:18.06:0,18,217 0/1:4,4:8:88.66:89,0,121 0/1:4,13:18:96.74:393,0,97 0/1:8,9:17:99:244,0,220 0/1:10,2:12:5.42:5,0,274 0/0:12,0:12:30.08:0,30,357 0/0:28,0:28:78.24:0,78,958 0/1:5,4:9:99:118,0,161 1/1:0,9:9:24.07:275,24,0 0/1:4,8:12:99:189,0,122 0/0:8,0:8:21.06:0,21,253 0/0:12,0:12:36.08:0,36,427 0/0:10,0:10:30.09:0,30,355 0/1:7,5:12:99:117,0,168 0/0:7,0:7:21.07:0,21,257 0/1:15,10:25:99:234,0,468 0/1:7,3:10:82.25:82,0,167 0/0:20,0:20:57.17:0,57,696 0/0:12,1:13:2.25:2,0,371 0/1:3,5:8:52.86:155,0,53 0/1:6,7:13:99:174,0,103 0/0:13,1:14:39.12:0,39,465 1/1:0,12:12:33.09:379,33,0 0/0:11,0:11:30.09:0,30,372 0/0:14,0:14:39.12:0,39,478 0/0:8,0:8:21.06:0,21,254 16 81249927 . C T 33612.69 . AC=36;AF=0.429;AN=84;BaseQRankSum=-26.545;DP=2743;Dels=0.00;FS=1.440;HRun=0;HaplotypeScore=2.6445;InbreedingCoeff=-0.1667;MQ=58.49;MQ0=0;MQRankSum=0.476;QD=16.36;ReadPosRankSum=5.864 GT:AD:DP:GQ:PL 0/1:22,22:44:99:541,0,691 0/1:25,10:35:99:247,0,725 1/1:1,47:48:94.56:1488,95,0 0/1:95,65:161:99:1765,0,2841 1/1:1,154:156:99:4983,388,0 0/1:50,57:107:99:1513,0,1624 1/1:1,58:59:99:1912,165,0 0/1:51,45:97:99:1198,0,1506 0/1:19,19:39:99:464,0,556 0/0:42,0:42:99:0,123,1515 1/1:0,38:38:99:1298,111,0 0/1:18,18:36:99:491,0,535 1/1:0,29:29:87.21:974,87,0 0/0:51,0:51:99:0,147,1829 0/1:72,72:145:99:1820,0,2024 0/0:46,0:46:99:0,132,1639 0/1:21,19:40:99:514,0,635 0/0:37,0:37:99:0,108,1309 0/0:83,0:83:99:0,223,2714 0/0:95,0:96:99:0,256,3193 0/1:36,52:90:99:1353,0,972 0/1:32,22:54:99:563,0,967 0/1:98,85:183:99:2267,0,3078 0/1:27,38:65:99:1045,0,777 0/0:84,1:85:99:0,226,2913 0/1:40,35:76:99:901,0,1135 0/1:16,20:36:99:598,0,495 0/1:24,21:45:99:598,0,718 0/1:23,14:37:99:362,0,736 0/0:48,0:48:99:0,132,1630 0/0:35,0:35:99:0,102,1281 0/1:49,47:96:99:1232,0,1324 0/0:59,0:59:99:0,159,1994 0/1:25,25:50:99:711,0,686 1/1:1,41:42:81.03:1316,81,0 0/0:58,0:58:99:0,159,1956 0/1:34,35:71:99:944,0,960 0/1:29,22:51:99:589,0,763 0/0:48,0:48:99:0,141,1689 0/1:15,26:41:99:792,0,430 0/1:17,15:32:99:427,0,552 0/1:26,26:52:99:703,0,819 16 81249954 . T A 36070.55 . AC=56;AF=0.667;AN=84;BaseQRankSum=1.579;DP=2022;Dels=0.00;FS=96.781;HRun=0;HaplotypeScore=2.1781;InbreedingCoeff=-0.2857;MQ=58.02;MQ0=0;MQRankSum=0.673;QD=18.42;ReadPosRankSum=-0.264 GT:AD:DP:GQ:PL 0/1:20,23:43:99:688,0,522 0/1:14,10:26:99:257,0,395 1/1:0,38:40:96.26:1157,96,0 0/1:60,36:106:99:864,0,1628 1/1:1,81:91:99:2755,226,0 0/1:28,49:87:99:1201,0,602 1/1:0,47:49:93.26:1130,93,0 0/1:38,27:71:99:676,0,1000 1/1:0,31:32:78.21:916,78,0 0/1:13,17:33:99:347,0,303 1/1:0,26:27:78.22:922,78,0 1/1:0,27:29:63.18:773,63,0 1/1:0,18:18:45.13:544,45,0 0/1:18,17:35:99:443,0,481 0/1:39,43:87:99:1097,0,1096 0/0:34,0:38:99:0,102,1200 1/1:1,41:43:99:1206,102,0 0/1:9,20:30:99:444,0,217 0/1:16,19:40:99:433,0,446 0/1:36,41:82:99:1097,0,925 1/1:0,62:63:99:1797,153,0 0/1:24,21:49:99:496,0,583 0/1:59,64:132:99:1621,0,1661 1/1:0,48:51:99:1353,114,0 1/1:0,60:62:99:1780,150,0 1/1:0,44:46:99:1432,120,0 0/1:10,17:27:99:344,0,259 0/1:10,14:29:99:356,0,294 0/1:13,14:28:99:296,0,369 0/1:8,14:24:99:369,0,228 0/0:26,0:26:54.16:0,54,653 1/1:0,80:82:99:2314,193,0 0/1:32,18:51:99:353,0,802 0/1:15,19:39:99:512,0,393 1/1:0,32:32:78.23:928,78,0 0/1:19,23:45:99:569,0,523 1/1:0,48:50:99:1601,135,0 0/1:16,17:36:99:469,0,365 1/1:0,40:40:96.26:1125,96,0 0/1:15,21:38:99:590,0,448 0/1:12,15:27:99:391,0,285 0/1:18,18:38:99:423,0,478 16 81323953 . G C 1474.40 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.607;DP=3003;Dels=0.00;FS=4.420;HRun=0;HaplotypeScore=1.3314;InbreedingCoeff=-0.0244;MQ=59.38;MQ0=0;MQRankSum=-0.328;QD=12.49;ReadPosRankSum=2.024 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,132,1652 0/0:63,0:63:99:0,181,2290 0/0:54,0:54:99:0,156,1919 0/0:133,0:133:99:0,361,4754 0/0:119,0:119:99:0,343,4508 0/0:108,0:108:99:0,286,3836 0/0:105,0:105:99:0,298,3948 0/0:125,0:125:99:0,340,4547 0/0:55,0:56:99:0,159,2026 0/0:46,0:46:99:0,132,1657 0/0:55,0:55:99:0,153,1939 0/0:56,0:56:99:0,163,2043 0/0:55,0:55:99:0,147,1856 0/0:63,0:63:99:0,184,2243 0/0:197,0:197:99:0,560,6923 0/0:46,0:46:99:0,132,1669 0/0:58,0:58:99:0,172,2153 0/0:44,0:44:99:0,120,1533 0/0:65,0:65:99:0,187,2280 0/0:68,0:68:99:0,184,2356 0/0:65,0:65:99:0,178,2189 0/0:44,0:44:99:0,120,1535 0/0:131,0:131:99:0,352,4697 0/0:87,0:87:99:0,247,3247 0/0:122,0:122:99:0,328,4339 0/0:93,0:93:99:0,250,3310 0/0:45,0:45:99:0,126,1579 0/0:48,0:48:99:0,132,1698 0/0:50,0:50:99:0,144,1768 0/0:51,0:51:99:0,153,1912 0/0:48,0:48:99:0,141,1709 0/0:55,0:56:99:0,141,1834 0/0:50,0:50:99:0,141,1803 0/0:56,0:56:99:0,162,2067 0/0:64,0:65:99:0,181,2298 0/0:54,0:54:99:0,147,1865 0/1:32,27:59:99:804,0,979 0/0:72,0:72:99:0,199,2514 0/1:34,25:59:99:733,0,1063 0/0:74,0:74:99:0,208,2648 0/0:45,0:45:99:0,129,1634 0/0:68,0:68:99:0,199,2519 16 81348764 . C T 202.56 . AC=3;AF=0.036;AN=84;BaseQRankSum=-2.235;DP=225;Dels=0.00;FS=1.522;HRun=1;HaplotypeScore=0.1096;InbreedingCoeff=0.1713;MQ=58.92;MQ0=0;MQRankSum=0.215;QD=9.65;ReadPosRankSum=0.220 GT:AD:DP:GQ:PL 0/0:3,0:3:9.03:0,9,108 0/0:5,0:5:15.05:0,15,187 0/0:4,0:4:12.03:0,12,138 0/0:10,0:10:27.09:0,27,350 0/0:9,0:9:27.08:0,27,344 0/0:11,0:11:33.10:0,33,415 0/0:10,0:10:30.08:0,30,368 0/0:13,0:13:33.11:0,33,439 0/0:5,0:5:12.04:0,12,156 0/0:1,0:1:3.01:0,3,38 0/0:2,0:2:6.02:0,6,76 0/0:1,0:1:3.01:0,3,39 0/0:4,0:4:12.04:0,12,151 0/0:3,0:3:9.03:0,9,108 0/0:13,0:13:39.07:0,39,449 0/0:7,0:7:18.05:0,18,228 0/0:3,0:3:9.02:0,9,104 0/0:8,0:8:15.05:0,15,211 0/0:9,0:9:24.08:0,24,311 0/0:3,0:3:9.03:0,9,108 0/1:5,1:6:20.21:20,0,138 0/1:0,4:4:0.26:147,12,0 0/1:6,5:11:99:119,0,209 0/0:2,0:2:6.02:0,6,80 0/0:5,0:5:15.05:0,15,206 0/0:5,0:5:15.05:0,15,206 0/0:2,0:2:6.02:0,6,76 0/0:5,0:5:15.05:0,15,185 0/0:4,0:4:9.03:0,9,119 0/0:5,0:5:15.05:0,15,191 0/0:6,0:6:18.06:0,18,220 0/0:4,0:4:9.03:0,9,121 0/0:14,0:14:36.11:0,36,455 0/0:3,0:3:9.03:0,9,113 0/0:2,0:2:6.02:0,6,77 0/0:7,0:7:21.07:0,21,265 0/0:1,0:1:3.01:0,3,35 0/0:2,0:2:6.02:0,6,76 0/0:2,0:2:6.02:0,6,72 0/0:4,0:4:12.04:0,12,150 0/0:2,0:2:6.02:0,6,78 0/0:4,0:4:12.04:0,12,153 16 81399026 . C T 1818.08 . AC=1;AF=0.012;AN=84;BaseQRankSum=-9.540;DP=7197;DS;Dels=0.00;FS=6.553;HRun=0;HaplotypeScore=3.7897;InbreedingCoeff=-0.0120;MQ=59.52;MQ0=0;MQRankSum=-1.511;QD=12.12;ReadPosRankSum=-1.809 GT:AD:DP:GQ:PL 0/0:149,0:149:99:0,409,5119 0/0:146,0:146:99:0,412,5130 0/0:143,0:143:99:0,379,4784 0/0:247,0:248:99:0,674,9002 0/0:240,0:240:99:0,686,9174 0/0:228,0:228:99:0,632,8372 0/0:180,0:181:99:0,497,6656 0/0:208,1:209:99:0,595,7796 0/0:168,0:168:99:0,460,5872 0/0:155,0:155:99:0,406,5140 0/0:123,0:123:99:0,349,4350 0/0:152,0:152:99:0,424,5301 0/0:128,1:129:99:0,337,4199 0/0:147,0:147:99:0,421,5248 0/0:249,0:250:99:0,698,8632 0/0:115,0:115:99:0,325,4052 0/0:184,0:184:99:0,490,6255 0/0:133,0:133:99:0,379,4650 0/0:209,0:209:99:0,559,6758 0/0:223,0:225:99:0,602,7672 0/0:227,0:227:99:0,623,7779 0/0:131,0:131:99:0,382,4774 0/0:243,0:243:99:0,698,9170 0/0:205,0:205:99:0,572,7622 0/0:212,0:212:99:0,599,8023 0/0:190,0:190:99:0,527,7070 0/0:125,0:125:99:0,346,4379 0/1:79,70:150:99:1864,0,2296 0/0:149,0:149:99:0,409,5169 0/0:158,0:158:99:0,412,5202 0/0:131,0:131:99:0,379,4784 0/0:207,0:207:99:0,551,6978 0/0:165,0:165:99:0,454,5763 0/0:138,0:138:99:0,388,4839 0/0:149,0:150:99:0,424,5319 0/0:153,0:153:99:0,427,5342 0/0:195,0:195:99:0,524,6413 0/0:138,0:138:99:0,379,4689 0/0:139,0:140:99:0,388,4811 0/0:167,0:167:99:0,472,5854 0/0:145,0:145:99:0,406,5060 0/0:142,0:143:99:0,406,5052 16 81922781 . A T 483.15 . 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T C 5.89 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.225;DP=678;Dels=0.00;FS=3.901;HRun=0;HaplotypeScore=0.1882;InbreedingCoeff=-0.0123;MQ=59.07;MQ0=0;MQRankSum=-0.872;QD=0.59;ReadPosRankSum=-0.364 GT:AD:DP:GQ:PL 0/0:12,0:12:36.11:0,36,433 0/0:17,0:17:48.14:0,48,578 0/0:18,0:18:51.15:0,51,614 0/0:16,0:16:45.14:0,45,547 0/0:11,0:11:33.10:0,33,400 0/0:12,0:12:36.09:0,36,427 0/0:18,0:18:54.16:0,54,650 0/0:13,0:13:33.10:0,33,414 0/0:19,0:19:54.16:0,54,645 0/0:14,0:14:33.10:0,33,401 0/0:17,0:17:48.15:0,48,588 0/0:12,0:12:36.11:0,36,435 0/0:21,0:21:60.18:0,60,723 0/0:12,0:12:36.11:0,36,427 0/0:54,0:54:99:0,135,1688 0/0:8,0:8:24.07:0,24,289 0/0:18,0:18:48.14:0,48,584 0/0:12,0:12:36.11:0,36,436 0/0:18,0:18:48.15:0,48,597 0/0:25,0:25:69.20:0,69,827 0/0:15,0:15:42.13:0,42,504 0/0:21,0:21:54.17:0,54,669 0/0:18,0:18:51.15:0,51,609 0/0:16,0:16:36.11:0,36,471 0/0:11,0:11:33.10:0,33,413 0/0:17,0:17:48.14:0,48,576 0/0:13,0:13:39.12:0,39,464 0/0:16,0:16:42.13:0,42,520 0/1:8,2:10:50.81:51,0,234 0/0:19,0:19:57.18:0,57,690 0/0:16,0:16:45.14:0,45,547 0/0:8,0:8:21.07:0,21,270 0/0:13,0:13:39.12:0,39,467 0/0:10,0:10:27.08:0,27,324 0/0:16,0:16:45.14:0,45,557 0/0:10,0:10:30.09:0,30,358 0/0:30,0:30:75.23:0,75,946 0/0:18,0:18:48.14:0,48,577 0/0:12,0:12:33.10:0,33,404 0/0:14,0:14:42.12:0,42,498 0/0:13,0:13:39.12:0,39,471 0/0:15,0:15:39.12:0,39,486 16 81922813 . C T 3891.91 . AC=12;AF=0.143;AN=84;BaseQRankSum=-2.783;DP=857;Dels=0.00;FS=13.514;HRun=0;HaplotypeScore=0.3057;InbreedingCoeff=0.0275;MQ=59.04;MQ0=0;MQRankSum=0.279;QD=15.63;ReadPosRankSum=0.206 GT:AD:DP:GQ:PL 0/1:8,7:15:99:184,0,220 0/1:12,6:18:99:134,0,347 0/1:10,12:22:99:364,0,319 0/0:22,0:22:51.17:0,51,691 0/1:3,7:10:96.02:202,0,96 0/1:4,13:17:72.16:436,0,72 0/0:29,0:29:72.22:0,72,941 0/1:10,7:17:99:177,0,318 0/1:12,11:23:99:295,0,349 0/0:17,0:17:48.13:0,48,559 1/1:0,23:23:66.17:779,66,0 0/0:18,0:18:42.13:0,42,526 0/0:27,0:27:66.19:0,66,811 0/0:15,0:15:42.13:0,42,513 0/1:43,36:79:99:885,0,1162 0/1:7,7:14:99:210,0,191 0/0:26,0:26:69.21:0,69,838 0/0:24,0:24:63.19:0,63,780 0/0:19,0:19:48.14:0,48,580 0/0:34,0:34:87.26:0,87,1095 0/0:23,0:23:57.18:0,57,718 0/0:22,0:22:57.17:0,57,701 0/0:27,0:27:66.21:0,66,865 0/0:16,0:16:42.13:0,42,542 0/0:20,0:20:51.17:0,51,673 0/0:22,0:22:51.16:0,51,687 0/0:10,0:10:27.08:0,27,327 0/0:16,0:16:42.12:0,42,516 0/0:14,0:14:33.10:0,33,418 0/0:18,0:18:45.14:0,45,559 0/0:14,0:14:42.13:0,42,517 0/0:10,0:10:24.07:0,24,294 0/0:14,0:14:39.10:0,39,462 0/0:11,0:11:30.08:0,30,346 0/0:19,0:19:54.16:0,54,648 0/1:3,8:11:80.21:225,0,80 0/0:38,0:38:99:0,99,1220 0/0:17,0:17:48.11:0,48,551 0/0:14,0:14:36.10:0,36,431 0/0:17,0:17:51.15:0,51,606 0/0:18,0:18:51.15:0,51,618 0/0:17,0:17:45.13:0,45,545 16 81942175 . A G 616.20 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.531;DP=1415;Dels=0.00;FS=0.853;HRun=0;HaplotypeScore=1.0361;InbreedingCoeff=-0.0244;MQ=59.29;MQ0=0;MQRankSum=-1.363;QD=13.11;ReadPosRankSum=0.708 GT:AD:DP:GQ:PL 0/1:10,11:21:99:322,0,292 0/1:14,12:26:99:356,0,378 0/0:30,0:30:87.25:0,87,1017 0/0:58,0:58:99:0,156,1892 0/0:58,0:58:99:0,141,1788 0/0:34,0:34:90.28:0,90,1148 0/0:41,0:41:99:0,111,1408 0/0:23,0:23:66.20:0,66,811 0/0:32,0:32:90.27:0,90,1090 0/0:22,0:22:63.19:0,63,752 0/0:30,0:30:84.26:0,84,1022 0/0:25,0:25:69.21:0,69,842 0/0:27,0:27:72.22:0,72,886 0/0:19,0:19:57.17:0,57,686 0/0:109,0:109:99:0,295,3533 0/0:21,0:21:60.18:0,60,714 0/0:26,0:26:72.22:0,72,875 0/0:19,0:19:54.16:0,54,639 0/0:45,0:45:99:0,126,1541 0/0:55,0:55:99:0,141,1748 0/0:42,0:42:99:0,111,1366 0/0:32,0:32:90.27:0,90,1069 0/0:56,0:56:99:0,147,1822 0/0:33,0:33:78.25:0,78,1008 0/0:37,0:37:96.30:0,96,1221 0/0:26,0:26:72.23:0,72,906 0/0:22,0:22:66.19:0,66,784 0/0:34,0:34:96.26:0,96,1139 0/0:18,0:18:54.16:0,54,646 0/0:21,0:21:63.19:0,63,748 0/0:27,0:27:81.25:0,81,967 0/0:44,0:44:99:0,117,1447 0/0:32,0:32:90.27:0,90,1080 0/0:21,0:21:57.18:0,57,709 0/0:26,0:26:75.23:0,75,907 0/0:41,0:41:99:0,111,1357 0/0:35,0:35:99:0,99,1207 0/0:31,0:31:87.27:0,87,1060 0/0:35,0:35:96.28:0,96,1147 0/0:36,0:36:99:0,99,1202 0/0:21,0:21:57.17:0,57,697 0/0:24,0:24:69.21:0,69,841 16 81965151 . G C 2501.13 . 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T C 64876.32 . AC=49;AF=0.583;AN=84;BaseQRankSum=-6.774;DP=3573;Dels=0.00;FS=0.641;HRun=0;HaplotypeScore=1.8260;InbreedingCoeff=0.1673;MQ=59.31;MQ0=0;MQRankSum=0.786;QD=22.77;ReadPosRankSum=0.594 GT:AD:DP:GQ:PL 0/1:43,40:83:99:1095,0,1159 0/0:91,0:91:99:0,241,2943 0/1:16,34:50:99:1001,0,395 0/1:79,56:135:99:1545,0,2178 1/1:0,76:76:99:2657,214,0 0/1:47,34:81:99:961,0,1369 1/1:0,77:77:99:2589,205,0 0/1:41,51:92:99:1422,0,1004 1/1:0,72:72:99:2375,199,0 0/1:37,36:73:99:937,0,1098 0/1:36,28:64:99:762,0,968 0/1:39,37:76:99:1038,0,1131 0/1:28,28:56:99:693,0,807 0/1:24,31:55:99:903,0,556 1/1:0,240:242:99:7340,614,0 0/1:30,44:75:99:1210,0,800 1/1:0,61:61:99:1939,168,0 0/0:55,0:55:99:0,153,1833 0/1:50,58:109:99:1432,0,1379 1/1:0,120:120:99:3718,313,0 1/1:0,113:114:99:3367,280,0 1/1:0,62:62:99:1973,165,0 0/0:145,0:145:99:0,385,4754 0/1:52,40:92:99:1057,0,1478 1/1:0,86:86:99:2771,217,0 0/0:84,0:84:99:0,217,2644 0/0:61,0:61:99:0,175,2078 0/0:84,0:84:99:0,229,2718 0/0:74,0:75:99:0,208,2477 0/1:39,34:73:99:943,0,1096 0/0:66,1:67:99:0,181,2188 1/1:0,121:121:99:3774,316,0 1/1:0,94:94:99:3001,256,0 0/1:43,34:77:99:890,0,1157 1/1:1,62:63:99:1854,130,0 0/1:45,28:74:99:719,0,1281 1/1:0,105:106:99:3237,271,0 1/1:0,80:80:99:2601,226,0 1/1:1,63:64:99:2023,141,0 0/1:45,29:74:99:782,0,1254 1/1:0,72:72:99:2265,196,0 0/0:62,0:62:99:0,175,2135 16 82034435 . C G 2352.13 . AC=5;AF=0.060;AN=84;BaseQRankSum=5.091;DP=2343;Dels=0.00;FS=1.785;HRun=0;HaplotypeScore=0.7962;InbreedingCoeff=-0.0633;MQ=59.51;MQ0=0;MQRankSum=-0.314;QD=9.72;ReadPosRankSum=-1.134 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,150,1915 0/0:49,0:49:99:0,129,1652 0/1:25,12:37:99:291,0,790 0/1:43,27:70:99:790,0,1346 0/0:74,0:74:99:0,181,2509 0/0:60,0:60:99:0,150,2054 0/0:62,0:62:99:0,169,2321 0/0:60,0:60:99:0,157,2124 0/1:24,15:39:99:422,0,716 0/0:45,0:45:99:0,123,1549 0/1:18,7:25:99:206,0,491 0/0:41,0:41:99:0,114,1428 0/0:43,0:43:99:0,105,1355 0/0:49,0:49:99:0,120,1552 0/0:192,0:192:99:0,472,6069 0/0:35,0:35:96.28:0,96,1206 0/0:36,0:36:99:0,99,1232 0/0:34,0:34:93.30:0,93,1197 0/0:70,0:70:99:0,187,2337 0/0:75,0:75:99:0,175,2281 0/0:92,0:92:99:0,235,2993 0/0:54,0:54:99:0,135,1753 0/1:43,28:71:99:739,0,1247 0/0:64,0:64:99:0,163,2220 0/0:58,0:58:99:0,153,2100 0/0:69,0:69:99:0,178,2409 0/0:25,0:25:60.19:0,60,772 0/0:32,0:32:87.28:0,87,1112 0/0:51,0:51:99:0,123,1606 0/0:38,0:38:99:0,105,1330 0/0:40,0:40:99:0,114,1439 0/0:69,0:69:99:0,172,2217 0/0:57,0:57:99:0,144,1870 0/0:59,0:59:99:0,156,1986 0/0:46,0:46:99:0,120,1518 0/0:35,0:35:96.30:0,96,1211 0/0:78,0:78:99:0,196,2519 0/0:43,0:43:99:0,117,1469 0/0:49,0:49:99:0,135,1733 0/0:52,0:52:99:0,123,1600 0/0:49,0:49:99:0,135,1686 0/0:60,0:60:99:0,150,1920 16 82034460 . C T 596.21 . 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G A 16954.38 . 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T G 4920.28 . 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T C 1074.08 . 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T C 2473.18 . AC=3;AF=0.036;AN=84;BaseQRankSum=-2.666;DP=1950;Dels=0.00;FS=8.419;HRun=0;HaplotypeScore=0.3820;InbreedingCoeff=-0.0370;MQ=59.43;MQ0=0;MQRankSum=-0.804;QD=15.17;ReadPosRankSum=0.364 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,108,1375 0/0:40,0:40:99:0,108,1334 0/0:37,0:37:99:0,105,1296 0/0:58,0:58:99:0,160,1991 0/0:52,0:52:99:0,138,1750 0/0:58,0:59:99:0,160,2070 0/0:56,0:56:99:0,150,1941 0/0:61,0:61:99:0,175,2184 0/0:41,0:41:99:0,108,1336 0/0:44,0:44:99:0,126,1547 0/0:41,0:41:99:0,117,1412 0/0:58,0:58:99:0,159,1978 0/0:49,0:49:99:0,120,1526 0/1:22,20:42:99:551,0,654 0/0:122,0:122:99:0,319,3964 0/0:26,0:26:75.23:0,75,925 0/0:32,0:32:90.28:0,90,1102 0/0:37,0:37:99:0,108,1309 0/0:44,0:45:99:0,120,1492 0/0:55,0:55:99:0,144,1801 0/0:55,0:55:99:0,141,1746 0/0:43,0:43:99:0,123,1510 0/0:75,0:75:99:0,220,2691 0/1:23,39:62:99:1162,0,633 0/1:29,30:59:99:835,0,880 0/0:50,1:51:99:0,108,1737 0/0:30,0:30:84.26:0,84,1037 0/0:47,0:47:99:0,138,1682 0/0:34,0:34:99:0,102,1246 0/0:39,0:39:99:0,108,1318 0/0:34,0:34:96.30:0,96,1187 0/0:36,0:36:96.30:0,96,1209 0/0:27,0:27:75.23:0,75,919 0/0:34,0:34:99:0,99,1199 0/0:40,0:40:99:0,105,1324 0/0:43,0:43:99:0,129,1574 0/0:39,0:39:99:0,105,1312 0/0:45,0:45:99:0,120,1503 0/0:42,0:42:99:0,117,1432 0/0:35,0:35:99:0,102,1249 0/0:45,0:45:99:0,120,1482 0/0:37,0:37:99:0,108,1344 16 83983071 . C T 38493.24 . AC=45;AF=0.536;AN=84;BaseQRankSum=13.940;DP=2512;Dels=0.00;FS=3.063;HRun=0;HaplotypeScore=2.1526;InbreedingCoeff=0.1863;MQ=59.26;MQ0=1;MQRankSum=0.761;QD=19.11;ReadPosRankSum=-0.346 GT:AD:DP:GQ:PL 0/0:32,0:33:84.20:0,84,977 0/0:28,0:28:75.18:0,75,858 0/1:7,16:23:99:480,0,139 0/1:108,67:176:99:1609,0,2927 0/1:67,67:134:99:1747,0,1618 1/1:0,110:111:99:3503,277,0 0/1:50,54:104:99:1380,0,1173 0/1:66,46:112:99:1198,0,1407 0/1:17,24:41:99:560,0,386 0/1:21,27:48:99:737,0,516 0/1:8,21:29:99:568,0,154 0/1:14,11:26:99:331,0,317 1/1:0,26:26:75.23:931,75,0 0/1:20,25:46:99:630,0,503 0/0:94,0:94:99:0,226,2605 0/1:13,24:37:99:565,0,354 0/0:44,0:44:99:0,108,1291 0/0:37,1:38:63.12:0,63,1068 0/1:41,25:67:99:573,0,929 1/1:0,78:78:99:2453,199,0 0/1:24,33:58:99:849,0,531 0/1:38,35:73:99:806,0,915 0/1:117,91:209:99:2402,0,2963 1/1:0,69:69:99:2127,166,0 1/1:0,107:108:99:3302,256,0 0/1:46,34:80:99:904,0,1245 1/1:0,30:30:81.22:987,81,0 1/1:0,26:26:75.21:894,75,0 1/1:0,35:35:90.28:1117,90,0 1/1:0,26:26:75.22:909,75,0 1/1:0,27:27:72.20:878,72,0 0/0:77,0:78:99:0,180,2064 1/1:0,54:55:99:1479,117,0 0/0:40,0:40:99:0,105,1194 0/0:40,0:40:99:0,108,1248 0/0:37,0:37:93.20:0,93,1025 1/1:0,62:62:99:1888,153,0 1/1:0,36:36:90.25:1117,90,0 1/1:0,36:36:90.28:1130,90,0 0/0:30,0:30:75.19:0,75,858 0/1:10,16:26:99:436,0,259 0/0:35,1:36:58.45:0,58,1032 16 84050209 . G A 1291.96 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.453;DP=2524;Dels=0.00;FS=12.183;HRun=1;HaplotypeScore=2.4427;InbreedingCoeff=-0.0244;MQ=59.09;MQ0=1;MQRankSum=2.256;QD=10.17;ReadPosRankSum=0.830 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,114,1352 0/0:53,0:53:99:0,141,1666 0/0:53,0:53:99:0,132,1593 0/0:113,0:113:99:0,292,3604 0/0:103,0:103:99:0,292,3620 0/0:66,0:66:99:0,190,2293 0/0:75,0:75:99:0,199,2436 0/0:82,1:83:99:0,197,2766 0/0:42,0:42:99:0,114,1377 0/0:31,0:31:87.24:0,87,1020 0/0:47,0:47:99:0,135,1608 0/0:45,0:45:99:0,132,1572 0/0:50,0:50:99:0,141,1656 0/0:44,0:44:99:0,123,1416 0/0:170,0:170:99:0,445,5355 0/0:47,0:47:99:0,138,1606 0/0:42,0:42:99:0,111,1333 0/0:32,0:32:84.21:0,84,997 0/0:66,1:67:99:0,187,2184 0/0:108,0:108:99:0,298,3535 0/0:81,1:84:99:0,190,2570 0/0:54,0:54:99:0,147,1750 0/0:91,0:91:99:0,247,3079 0/1:22,24:46:99:705,0,609 0/1:56,25:81:99:649,0,1572 0/0:55,0:55:99:0,153,1886 0/0:38,0:38:99:0,108,1259 0/0:48,0:48:99:0,132,1513 0/0:47,0:47:99:0,129,1506 0/0:62,0:62:99:0,177,2099 0/0:44,0:44:99:0,129,1464 0/0:61,0:61:99:0,165,1960 0/0:58,0:59:99:0,153,1846 0/0:53,0:53:99:0,153,1790 0/0:56,0:56:99:0,162,1902 0/0:46,0:46:99:0,123,1462 0/0:48,0:48:99:0,132,1532 0/0:62,0:62:99:0,168,2016 0/0:46,0:46:99:0,132,1570 0/0:40,0:40:99:0,111,1328 0/0:44,0:44:99:0,123,1448 0/0:47,0:47:99:0,129,1560 16 84050218 . G A 1079.50 . 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C G 348.25 . 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C T 1747.95 . AC=3;AF=0.036;AN=84;BaseQRankSum=-11.495;DP=3418;DS;Dels=0.00;FS=4.011;HRun=0;HaplotypeScore=3.0946;InbreedingCoeff=-0.0370;MQ=59.38;MQ0=0;MQRankSum=0.118;QD=12.85;ReadPosRankSum=-0.291 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,153,1927 0/0:48,0:48:99:0,138,1767 0/0:39,0:39:99:0,111,1384 0/0:218,0:220:99:0,629,8255 0/0:219,0:219:99:0,635,8509 0/0:121,0:121:99:0,349,4720 0/0:123,0:123:99:0,340,4624 0/0:119,0:119:99:0,343,4585 0/0:41,0:41:99:0,120,1522 0/0:37,0:37:99:0,108,1371 0/0:41,0:41:99:0,123,1521 0/0:45,0:45:99:0,135,1649 0/0:36,0:36:90.28:0,90,1130 0/0:49,0:49:99:0,141,1730 0/0:199,0:200:99:0,566,7104 0/0:53,0:53:99:0,144,1797 0/0:44,0:44:99:0,126,1578 0/0:39,0:39:99:0,111,1400 0/0:124,0:124:99:0,349,4377 0/0:110,0:111:99:0,322,3976 0/0:101,0:101:99:0,292,3713 0/0:87,0:87:99:0,244,3037 0/0:242,0:242:99:0,707,9532 0/0:104,0:104:99:0,292,3894 0/0:119,0:119:99:0,349,4693 0/0:125,0:125:99:0,337,4533 0/0:46,0:46:99:0,129,1608 0/0:43,0:43:99:0,123,1540 0/0:33,0:33:96.31:0,96,1226 0/0:34,0:34:96.29:0,96,1195 0/0:45,0:45:99:0,132,1606 0/0:126,0:128:99:0,355,4497 0/0:69,0:69:99:0,196,2468 0/1:25,24:50:99:563,0,777 0/1:18,21:39:99:535,0,536 0/1:22,25:47:99:725,0,647 0/0:91,1:92:99:0,239,3294 0/0:45,0:46:99:0,132,1647 0/0:54,0:54:99:0,153,1941 0/0:59,0:59:99:0,178,2214 0/0:35,0:35:99:0,102,1224 0/0:58,0:58:99:0,169,2123 16 84094363 . C T 174.66 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.827;DP=507;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2781;InbreedingCoeff=-0.0147;MQ=58.59;MQ0=0;MQRankSum=-1.129;QD=13.44;ReadPosRankSum=0.823 GT:AD:DP:GQ:PL 0/0:14,0:14:36.06:0,36,365 0/0:8,0:8:21.05:0,21,225 0/0:10,0:11:18.05:0,18,201 0/0:18,0:18:54.14:0,54,606 0/0:14,0:14:33.09:0,33,374 0/0:16,0:16:45.13:0,45,533 0/0:12,0:12:36.11:0,36,426 0/0:16,0:16:45.10:0,45,496 0/0:10,0:10:30.06:0,30,318 0/0:5,0:5:15.04:0,15,160 0/0:8,0:8:24.03:0,24,237 0/0:4,0:4:12.03:0,12,130 0/0:11,0:11:30.07:0,30,314 0/0:12,0:12:36.08:0,36,374 0/0:21,0:21:57.15:0,57,643 0/0:8,0:8:21.05:0,21,229 0/0:12,0:12:36.09:0,36,384 0/0:7,0:7:21.04:0,21,226 0/0:11,0:11:33.06:0,33,339 0/0:18,0:18:54.12:0,54,578 0/0:14,0:14:42.09:0,42,443 0/0:13,0:13:39.10:0,39,424 0/0:20,0:20:60.15:0,60,681 0/0:18,0:18:54.16:0,54,634 0/0:14,0:14:42.10:0,42,472 0/0:12,0:12:36.10:0,36,422 0/0:12,0:12:30.07:0,30,322 0/0:6,0:6:15.04:0,15,167 0/1:6,7:13:99:221,0,122 0/0:10,0:10:27.07:0,27,291 0/0:14,0:14:39.06:0,39,411 0/0:23,0:23:63.17:0,63,723 0/0:18,0:18:54.13:0,54,580 0/0:7,0:7:18.05:0,18,195 0/0:8,0:8:24.06:0,24,255 0/0:9,0:9:27.07:0,27,300 0/0:14,0:14:42.08:0,42,449 0/0:11,0:11:30.03:0,30,296 0/0:10,0:10:30.08:0,30,326 0/0:9,0:9:27.06:0,27,285 0/0:6,0:6:18.05:0,18,197 0/0:10,0:10:24.05:0,24,259 16 84100173 . C T 1986.81 . AC=3;AF=0.036;AN=84;BaseQRankSum=-9.020;DP=1789;Dels=0.00;FS=2.292;HRun=2;HaplotypeScore=0.6604;InbreedingCoeff=-0.0370;MQ=58.87;MQ0=0;MQRankSum=1.178;QD=16.15;ReadPosRankSum=-0.102 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,126,1609 0/0:48,0:48:99:0,144,1805 0/0:37,0:37:99:0,108,1368 0/0:68,0:69:99:0,196,2556 0/0:55,0:55:99:0,157,2095 0/0:43,0:43:99:0,123,1673 0/0:38,0:38:99:0,111,1493 0/0:54,0:54:99:0,150,1988 0/0:31,0:31:90.28:0,90,1124 0/0:41,0:41:99:0,117,1452 0/0:39,0:39:99:0,114,1430 0/0:41,0:41:99:0,120,1501 0/0:38,0:38:99:0,111,1399 0/0:36,0:36:99:0,105,1328 0/0:138,0:139:99:0,397,5031 0/0:34,0:34:96.30:0,96,1221 0/0:47,0:47:99:0,135,1723 0/0:37,0:37:99:0,108,1346 0/0:39,0:39:99:0,108,1347 0/1:25,28:53:99:813,0,755 0/0:39,0:39:99:0,114,1415 0/0:28,0:28:78.24:0,78,988 0/0:61,0:61:99:0,178,2384 0/0:37,0:38:99:0,108,1434 0/0:49,0:49:99:0,141,1910 0/0:32,0:32:93.30:0,93,1257 0/0:39,0:39:99:0,102,1292 0/0:32,0:32:90.28:0,90,1114 0/0:28,0:28:78.23:0,78,988 0/0:31,1:32:84.27:0,84,1053 0/0:26,0:26:75.24:0,75,951 0/0:73,0:73:99:0,196,2477 0/0:36,0:36:99:0,99,1247 0/0:35,0:35:99:0,105,1321 0/0:39,0:39:99:0,108,1394 0/0:32,0:32:90.26:0,90,1118 0/0:40,0:40:99:0,108,1371 0/0:35,0:35:99:0,99,1231 0/0:30,0:30:84.27:0,84,1068 0/1:15,14:29:99:421,0,480 0/0:31,0:31:93.29:0,93,1147 0/1:14,27:41:99:828,0,374 16 84129399 . C T 1712.55 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.863;DP=3760;DS;Dels=0.00;FS=4.105;HRun=1;HaplotypeScore=2.5292;InbreedingCoeff=-0.0244;MQ=59.19;MQ0=0;MQRankSum=-0.186;QD=14.04;ReadPosRankSum=-2.084 GT:AD:DP:GQ:PL 0/0:61,0:61:99:0,159,2014 0/0:65,0:65:99:0,169,2143 0/0:73,0:73:99:0,199,2529 0/0:180,0:182:99:0,506,6799 0/0:176,0:176:99:0,509,6883 0/0:130,0:130:99:0,361,4916 0/0:108,0:108:99:0,295,3988 0/0:130,0:130:99:0,373,4975 0/0:74,0:74:99:0,199,2525 0/0:48,0:48:99:0,129,1648 0/0:59,0:59:99:0,153,1975 0/0:73,0:73:99:0,196,2487 0/0:57,0:57:99:0,156,1983 0/0:62,0:63:99:0,166,2114 0/0:226,1:227:99:0,602,7655 0/0:67,0:67:99:0,193,2422 0/0:63,0:63:99:0,175,2195 0/0:50,0:50:99:0,138,1743 0/0:130,0:130:99:0,349,4391 0/0:166,0:167:99:0,442,5613 0/0:120,0:120:99:0,328,4054 0/0:85,0:85:99:0,226,2887 0/0:179,0:179:99:0,509,6948 0/0:95,0:95:99:0,265,3567 0/0:114,0:114:99:0,304,4181 0/0:93,0:93:99:0,250,3386 0/0:47,0:47:99:0,129,1638 0/0:48,0:48:99:0,129,1635 0/0:43,0:43:99:0,111,1424 0/0:58,0:58:99:0,163,2067 0/0:67,0:67:99:0,190,2439 0/0:112,0:113:99:0,298,3800 0/0:65,0:65:99:0,181,2260 0/0:86,0:86:99:0,238,2983 0/0:61,0:61:99:0,169,2131 0/0:63,0:63:99:0,172,2177 0/0:124,0:124:99:0,340,4293 0/0:67,0:67:99:0,181,2289 0/0:52,0:52:99:0,153,1936 0/1:28,28:56:99:814,0,866 0/0:55,0:55:99:0,153,1928 0/1:34,32:66:99:961,0,988 16 84158248 . G C 23052.75 . AC=29;AF=0.345;AN=84;BaseQRankSum=0.666;DP=2575;Dels=0.00;FS=26.084;HRun=0;HaplotypeScore=1.4533;InbreedingCoeff=0.2100;MQ=59.10;MQ0=0;MQRankSum=2.298;QD=18.00;ReadPosRankSum=1.401 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,111,1405 0/0:50,0:50:99:0,129,1627 0/0:45,0:45:99:0,120,1531 0/1:57,57:114:99:1790,0,1557 0/1:36,31:67:99:925,0,1153 1/1:0,69:69:99:2330,175,0 0/1:38,26:64:99:749,0,1247 1/1:0,57:57:99:1994,150,0 0/0:58,0:58:99:0,159,2002 0/0:60,0:60:99:0,156,2008 0/0:37,0:37:96.30:0,96,1229 0/1:35,10:45:99:192,0,991 0/1:28,16:44:99:405,0,831 0/1:25,15:40:99:410,0,794 0/0:195,0:195:99:0,478,6130 0/0:53,0:53:99:0,147,1853 0/1:18,22:40:99:697,0,507 0/1:34,18:52:99:515,0,973 0/1:46,43:89:99:1136,0,1227 0/1:54,34:88:99:870,0,1614 0/0:102,0:102:99:0,247,3096 0/0:62,0:62:99:0,150,1986 0/1:57,43:100:99:1321,0,1857 0/0:93,0:93:99:0,241,3279 0/0:78,0:78:99:0,208,2776 0/0:70,1:71:99:0,149,2443 0/0:27,0:27:72.23:0,72,922 0/0:45,0:45:99:0,117,1483 0/0:51,0:51:99:0,138,1755 1/1:0,40:40:99:1498,120,0 1/1:0,34:34:96.29:1196,96,0 0/0:98,0:98:99:0,250,3238 0/1:27,32:60:99:879,0,838 1/1:1,38:39:80.65:1276,81,0 1/1:2,40:42:48.36:1364,48,0 0/1:22,22:44:99:571,0,668 0/1:36,39:76:99:1078,0,950 1/1:1,39:40:84.73:1368,85,0 0/1:21,16:37:99:489,0,636 0/0:35,0:35:90.27:0,90,1165 0/0:38,0:38:99:0,102,1300 0/0:52,0:52:99:0,135,1754 16 84213652 . G A 2701.92 . AC=8;AF=0.095;AN=84;BaseQRankSum=-4.816;DP=1083;Dels=0.00;FS=0.393;HRun=0;HaplotypeScore=1.1214;InbreedingCoeff=-0.1057;MQ=58.81;MQ0=1;MQRankSum=-0.127;QD=13.93;ReadPosRankSum=3.082 GT:AD:DP:GQ:PL 0/0:20,0:20:48.11:0,48,578 0/0:12,0:12:27.08:0,27,334 0/0:22,0:22:57.16:0,57,698 0/0:80,0:80:99:0,199,2563 0/0:61,0:61:99:0,147,1913 0/1:13,21:34:99:538,0,330 0/1:17,16:33:99:466,0,408 0/0:41,0:41:96.30:0,96,1245 0/0:25,0:25:66.21:0,66,849 0/0:19,0:19:48.15:0,48,621 0/0:16,0:16:42.13:0,42,504 0/0:7,0:7:18.05:0,18,216 0/0:18,0:18:45.15:0,45,586 0/0:23,0:23:54.17:0,54,681 0/0:60,0:60:99:0,147,1808 0/0:18,0:18:39.12:0,39,483 0/0:18,0:18:39.12:0,39,496 0/0:24,0:24:60.18:0,60,748 0/1:7,18:25:99:381,0,189 0/1:13,16:29:99:414,0,302 0/0:21,0:21:39.10:0,39,461 0/0:15,0:15:36.12:0,36,477 0/0:59,0:59:99:0,144,1910 0/0:38,0:38:81.24:0,81,1067 0/0:53,0:53:99:0,135,1790 0/0:25,1:26:63.20:0,63,841 0/0:10,0:10:21.07:0,21,287 0/0:10,0:10:27.08:0,27,329 0/0:19,0:19:48.15:0,48,599 0/0:22,0:22:54.12:0,54,626 0/0:11,0:11:27.06:0,27,332 0/0:30,0:30:66.21:0,66,871 0/0:18,0:18:45.13:0,45,562 0/1:4,12:17:39.51:371,0,40 0/1:8,4:12:47.02:47,0,260 0/0:17,1:18:48.15:0,48,613 0/1:11,17:28:99:389,0,194 0/1:7,9:16:99:215,0,207 0/0:19,0:19:48.15:0,48,617 0/0:14,0:14:33.11:0,33,426 0/0:17,0:17:39.12:0,39,518 0/0:25,0:25:63.20:0,63,800 16 84213684 . C T 485.24 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.210;DP=887;Dels=0.00;FS=3.693;HRun=2;HaplotypeScore=0.6716;InbreedingCoeff=-0.0249;MQ=59.09;MQ0=1;MQRankSum=0.251;QD=14.27;ReadPosRankSum=-1.006 GT:AD:DP:GQ:PL 0/0:16,0:16:48.15:0,48,599 0/0:9,0:9:27.09:0,27,343 0/0:14,0:14:39.12:0,39,492 0/0:62,0:62:99:0,166,2182 0/0:59,0:59:99:0,162,2116 0/0:27,0:27:75.23:0,75,965 0/0:22,0:22:57.17:0,57,746 0/0:31,0:31:90.28:0,90,1182 0/1:8,11:19:99:327,0,214 0/0:17,0:17:45.14:0,45,572 0/1:7,8:15:99:221,0,209 0/0:14,0:14:36.11:0,36,460 0/0:15,0:15:39.13:0,39,509 0/0:16,0:16:45.14:0,45,577 0/0:55,0:55:99:0,150,1891 0/0:15,0:15:39.12:0,39,483 0/0:17,0:17:51.16:0,51,626 0/0:24,0:24:66.18:0,66,806 0/0:20,0:20:60.17:0,60,744 0/0:28,0:28:72.23:0,72,943 0/0:25,0:25:66.21:0,66,826 0/0:12,0:12:33.07:0,33,399 0/0:42,0:42:99:0,111,1448 0/0:33,0:33:87.28:0,87,1167 0/0:30,0:30:81.24:0,81,1065 0/0:20,0:20:51.17:0,51,694 0/0:11,0:11:30.10:0,30,384 0/0:10,0:10:30.09:0,30,370 0/0:14,0:14:39.12:0,39,494 0/0:16,0:16:45.15:0,45,587 0/0:6,0:6:18.06:0,18,229 0/0:21,0:21:57.14:0,57,691 0/0:7,0:7:18.06:0,18,230 0/0:14,0:14:36.11:0,36,450 0/0:16,0:16:48.13:0,48,563 0/0:13,0:13:39.11:0,39,472 0/0:31,1:32:75.24:0,75,950 0/0:11,0:11:33.10:0,33,417 0/0:12,0:12:33.11:0,33,427 0/0:11,0:11:33.11:0,33,421 0/0:13,0:13:33.11:0,33,429 0/0:23,0:23:66.18:0,66,835 16 84215015 . C T 925.83 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.004;DP=1220;Dels=0.00;FS=5.004;HRun=0;HaplotypeScore=0.9808;InbreedingCoeff=-0.0244;MQ=58.67;MQ0=0;MQRankSum=-0.633;QD=14.47;ReadPosRankSum=1.046 GT:AD:DP:GQ:PL 0/0:19,0:19:54.14:0,54,623 0/0:20,0:20:57.16:0,57,656 0/0:13,0:13:36.09:0,36,398 0/0:51,0:51:99:0,123,1566 0/0:56,0:56:99:0,150,1905 0/0:34,0:34:84.27:0,84,1092 0/0:18,0:18:54.17:0,54,684 0/0:32,0:32:84.23:0,84,1037 0/0:28,0:28:69.20:0,69,829 0/0:20,0:20:54.16:0,54,635 0/0:27,0:27:66.14:0,66,749 0/0:10,0:10:27.08:0,27,316 0/0:17,0:17:45.13:0,45,533 0/0:31,0:31:81.24:0,81,977 0/0:66,0:66:99:0,171,2028 0/0:33,0:33:93.23:0,93,1041 0/0:21,0:21:60.17:0,60,711 0/0:18,0:18:45.12:0,45,537 0/0:51,0:51:99:0,135,1574 0/0:40,0:40:99:0,105,1252 0/0:43,0:43:99:0,114,1306 0/0:31,0:31:84.24:0,84,996 0/0:60,0:60:99:0,163,2089 0/0:38,0:38:93.28:0,93,1208 0/0:38,0:38:93.31:0,93,1257 0/0:34,0:34:87.26:0,87,1113 0/0:12,0:12:33.09:0,33,382 0/0:20,0:20:60.12:0,60,645 0/0:17,0:17:48.12:0,48,553 0/0:16,0:16:48.12:0,48,549 0/0:27,0:27:75.18:0,75,862 0/0:36,0:36:96.27:0,96,1156 0/0:26,1:27:36.07:0,36,770 0/0:18,0:18:54.15:0,54,625 0/0:16,0:16:42.13:0,42,513 0/0:26,0:26:69.19:0,69,814 0/1:19,22:41:99:575,0,424 0/1:8,15:23:99:413,0,214 0/0:27,0:27:78.20:0,78,892 0/0:25,0:25:72.20:0,72,837 0/0:17,0:17:45.12:0,45,503 0/0:23,0:23:63.20:0,63,780 16 84218565 . T C 2703.55 . AC=7;AF=0.083;AN=84;BaseQRankSum=-3.769;DP=1304;Dels=0.00;FS=10.120;HRun=0;HaplotypeScore=0.7139;InbreedingCoeff=-0.0909;MQ=59.08;MQ0=0;MQRankSum=2.832;QD=15.27;ReadPosRankSum=-0.776 GT:AD:DP:GQ:PL 0/0:22,0:22:60.18:0,60,719 0/0:27,0:27:78.21:0,78,919 0/0:32,0:32:78.24:0,78,986 0/0:53,0:53:99:0,129,1636 0/0:69,0:69:99:0,181,2228 0/0:31,0:31:75.24:0,75,989 0/1:20,20:40:99:566,0,515 0/0:42,0:42:99:0,99,1251 0/0:29,0:29:81.23:0,81,945 0/0:20,0:20:57.17:0,57,685 0/0:26,1:27:35.24:0,35,811 0/0:21,0:21:54.16:0,54,647 0/0:17,0:17:45.14:0,45,559 0/0:26,0:26:72.22:0,72,881 0/0:78,0:78:99:0,196,2358 0/0:20,0:20:54.14:0,54,646 0/1:10,11:21:99:252,0,268 0/0:22,0:22:66.19:0,66,774 0/0:38,0:38:99:0,102,1251 0/0:40,0:40:99:0,111,1339 0/0:25,0:25:69.20:0,69,813 0/1:10,12:22:99:335,0,240 0/0:51,0:51:99:0,123,1563 0/0:36,0:36:90.28:0,90,1136 0/0:30,0:30:84.26:0,84,1042 0/0:42,0:42:99:0,102,1298 0/1:6,15:21:99:462,0,111 0/1:14,20:34:99:430,0,395 0/0:23,0:23:63.19:0,63,774 0/0:25,0:25:75.23:0,75,897 0/0:34,0:34:90.25:0,90,1094 0/0:45,0:45:99:0,123,1487 0/0:19,0:19:51.16:0,51,626 0/0:12,0:12:33.08:0,33,384 0/1:5,17:22:99:449,0,119 0/0:30,0:30:78.24:0,78,970 0/0:41,0:41:99:0,105,1285 0/0:23,0:23:69.21:0,69,817 0/0:23,1:24:69.21:0,69,824 0/0:36,0:36:99:0,99,1170 0/0:16,0:17:48.14:0,48,563 0/1:6,11:17:99:324,0,169 16 84228718 . C T 316.94 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.768;DP=1451;Dels=0.00;FS=1.101;HRun=0;HaplotypeScore=0.9135;InbreedingCoeff=-0.0121;MQ=59.02;MQ0=1;MQRankSum=0.371;QD=9.06;ReadPosRankSum=1.182 GT:AD:DP:GQ:PL 0/0:31,0:31:87.22:0,87,971 0/0:35,0:35:93.23:0,93,1052 0/0:27,0:27:69.19:0,69,792 0/0:82,0:82:99:0,208,2532 0/0:74,0:74:99:0,193,2337 0/0:43,0:43:99:0,111,1376 0/0:40,0:40:99:0,114,1391 0/0:44,0:44:99:0,123,1479 0/0:24,0:24:63.16:0,63,734 0/0:22,0:22:63.18:0,63,735 0/0:16,0:16:45.11:0,45,484 0/0:25,0:25:63.16:0,63,719 0/0:21,0:21:54.11:0,54,606 0/1:20,15:35:99:363,0,591 0/0:107,0:107:99:0,283,3298 0/0:23,0:23:60.13:0,60,654 0/0:21,0:21:54.12:0,54,612 0/0:27,0:27:72.18:0,72,820 0/0:35,0:35:93.27:0,93,1108 0/0:56,0:58:99:0,147,1689 0/0:41,0:41:99:0,105,1210 0/0:26,0:26:75.19:0,75,839 0/0:80,0:80:99:0,211,2514 0/0:30,0:30:84.22:0,84,988 0/0:47,0:47:99:0,129,1562 0/0:25,0:25:66.18:0,66,778 0/0:12,0:12:33.08:0,33,381 0/0:26,0:26:60.17:0,60,698 0/0:13,0:13:39.08:0,39,421 0/0:26,0:26:69.20:0,69,813 0/0:29,0:29:81.23:0,81,936 0/0:42,0:42:99:0,117,1354 0/0:28,0:28:75.18:0,75,840 0/0:18,0:18:51.13:0,51,573 0/0:24,0:25:72.18:0,72,801 0/0:24,0:24:60.16:0,60,686 0/0:39,0:39:99:0,99,1160 0/0:32,0:32:72.18:0,72,816 0/0:22,0:22:60.15:0,60,694 0/0:16,0:16:45.12:0,45,502 0/0:30,0:30:78.23:0,78,928 0/0:29,0:29:78.20:0,78,902 16 84228770 . G C 10618.63 . AC=27;AF=0.321;AN=84;BaseQRankSum=-15.063;DP=1148;Dels=0.00;FS=10.775;HRun=0;HaplotypeScore=0.8269;InbreedingCoeff=0.0591;MQ=58.72;MQ0=0;MQRankSum=1.189;QD=15.04;ReadPosRankSum=-0.682 GT:AD:DP:GQ:PL 0/0:21,0:21:57.17:0,57,718 0/0:17,2:19:3.92:0,4,509 0/0:17,0:17:51.16:0,51,647 0/1:32,26:58:99:710,0,891 0/1:29,28:57:99:712,0,828 1/1:0,34:34:96.28:1154,96,0 0/1:18,16:34:99:436,0,525 1/1:0,34:34:93.28:1132,93,0 0/0:23,0:23:66.20:0,66,819 0/1:11,7:18:99:171,0,351 0/0:13,0:13:36.08:0,36,421 0/1:9,11:20:99:280,0,255 0/1:7,6:13:99:139,0,227 0/1:21,14:35:99:349,0,639 0/1:47,34:81:99:805,0,1296 0/1:17,9:26:99:187,0,538 0/0:7,0:7:18.06:0,18,230 1/1:0,17:17:45.12:513,45,0 1/1:0,32:32:84.23:995,84,0 0/1:25,17:42:99:411,0,722 0/0:36,0:36:90.28:0,90,1141 0/0:24,0:24:63.18:0,63,771 0/1:40,21:61:99:577,0,1293 0/0:32,0:32:84.27:0,84,1128 0/0:35,0:35:87.28:0,87,1157 0/0:20,0:20:51.17:0,51,706 0/0:14,0:14:39.12:0,39,495 0/0:21,0:21:60.19:0,60,754 0/0:22,0:22:63.19:0,63,777 0/0:20,0:20:48.14:0,48,591 0/1:10,9:19:99:233,0,327 0/0:43,1:44:99:0,105,1339 0/0:19,0:19:57.18:0,57,717 1/1:0,20:20:60.16:670,60,0 0/1:12,7:19:99:190,0,258 0/1:6,8:14:99:198,0,178 0/1:14,14:28:99:287,0,359 0/1:12,13:25:99:320,0,340 0/1:13,6:19:99:149,0,338 0/0:17,0:17:45.14:0,45,567 0/0:16,1:17:12.63:0,13,470 0/0:20,1:21:26.76:0,27,694 16 84228873 . C T 6392.41 . AC=20;AF=0.238;AN=84;BaseQRankSum=-11.342;DP=827;Dels=0.00;FS=1.267;HRun=1;HaplotypeScore=0.7027;InbreedingCoeff=0.0811;MQ=57.95;MQ0=0;MQRankSum=-0.885;QD=17.28;ReadPosRankSum=-0.987 GT:AD:DP:GQ:PL 0/0:17,0:17:48.15:0,48,606 0/0:16,0:16:48.15:0,48,588 0/0:13,0:13:36.12:0,36,470 0/1:24,26:50:99:687,0,739 0/1:13,16:29:99:457,0,405 1/1:0,17:17:45.14:554,45,0 0/1:11,10:21:99:288,0,341 1/1:0,17:17:42.12:506,42,0 0/0:16,0:16:42.12:0,42,535 0/0:9,0:9:27.08:0,27,337 0/0:16,0:16:48.15:0,48,594 0/1:5,3:8:82.47:82,0,161 0/1:6,5:11:99:139,0,201 0/1:12,8:20:99:196,0,331 0/0:37,0:37:93.29:0,93,1193 0/0:17,0:17:51.13:0,51,621 0/0:13,0:13:36.11:0,36,451 0/1:10,5:15:99:139,0,305 1/1:0,26:26:75.23:904,75,0 0/1:15,17:32:99:475,0,391 0/0:38,0:38:96.31:0,96,1243 0/0:15,0:15:45.14:0,45,555 0/1:20,21:41:99:525,0,626 0/0:24,0:24:66.21:0,66,878 0/0:34,0:34:87.27:0,87,1165 0/0:22,0:22:54.17:0,54,728 0/0:15,0:15:39.12:0,39,491 0/0:13,0:13:33.09:0,33,410 0/0:10,0:10:30.09:0,30,363 0/0:14,0:14:42.10:0,42,512 0/0:17,0:17:48.15:0,48,614 0/0:20,0:20:51.16:0,51,639 0/0:12,0:12:30.07:0,30,362 0/1:3,9:12:65.98:290,0,66 0/1:5,8:13:99:221,0,144 0/0:22,0:22:54.17:0,54,689 0/1:14,12:26:99:318,0,405 0/1:5,9:14:99:285,0,114 0/1:6,12:18:99:328,0,159 0/0:14,0:14:42.13:0,42,506 0/0:18,0:18:51.15:0,51,642 0/0:15,0:15:39.12:0,39,495 16 84229436 . G A 5290.20 . AC=26;AF=0.310;AN=84;BaseQRankSum=6.235;DP=710;Dels=0.00;FS=3.418;HRun=0;HaplotypeScore=0.7308;InbreedingCoeff=-0.1233;MQ=58.05;MQ0=0;MQRankSum=1.183;QD=14.41;ReadPosRankSum=1.798 GT:AD:DP:GQ:PL 1/1:0,12:12:36.09:409,36,0 0/1:6,5:11:86.40:86,0,127 0/0:10,0:10:27.08:0,27,315 0/0:64,0:64:99:0,156,1926 0/1:26,21:47:99:513,0,732 0/0:31,0:31:75.24:0,75,950 0/1:7,7:14:99:228,0,177 0/0:24,0:24:63.19:0,63,786 0/0:11,0:11:27.07:0,27,310 0/0:12,0:12:30.08:0,30,357 0/1:3,2:5:60.56:61,0,73 0/0:13,0:13:33.08:0,33,376 0/0:7,0:7:15.05:0,15,201 0/0:11,0:11:27.08:0,27,326 0/1:20,5:25:99:101,0,533 0/1:8,8:16:99:239,0,203 0/1:2,7:9:41.86:204,0,42 0/0:14,0:14:36.10:0,36,413 0/0:22,0:22:57.14:0,57,639 0/1:12,19:31:99:489,0,316 0/1:4,5:9:99:124,0,107 0/1:10,7:17:99:199,0,247 0/0:30,0:30:84.25:0,84,1021 0/1:8,17:25:99:497,0,170 0/0:26,0:26:69.21:0,69,854 1/1:0,25:25:66.18:817,66,0 0/1:4,2:6:46.43:46,0,118 0/0:11,0:11:30.06:0,30,343 1/1:0,4:4:12.04:140,12,0 0/1:9,4:13:99:109,0,265 0/1:7,7:14:99:191,0,172 0/1:13,6:19:99:151,0,285 0/0:15,0:15:39.11:0,39,454 0/0:11,0:11:33.09:0,33,374 0/0:17,0:17:42.08:0,42,469 0/1:8,5:13:99:147,0,230 0/1:7,14:21:99:358,0,154 0/1:5,1:6:18.08:18,0,150 0/1:8,4:12:82.90:83,0,167 0/0:5,1:6:9.02:0,9,92 0/0:8,0:8:21.06:0,21,250 0/1:10,3:13:79.44:79,0,248 16 84229559 . T C 20078.12 . AC=64;AF=0.762;AN=84;BaseQRankSum=3.618;DP=830;Dels=0.00;FS=4.023;HRun=0;HaplotypeScore=0.6049;InbreedingCoeff=0.2091;MQ=57.59;MQ0=0;MQRankSum=0.551;QD=26.70;ReadPosRankSum=0.523 GT:AD:DP:GQ:PL 1/1:0,12:13:33.08:394,33,0 0/1:7,7:14:99:141,0,219 0/0:11,0:11:30.09:0,30,359 0/1:15,29:44:99:896,0,409 1/1:0,40:40:99:1493,120,0 1/1:0,29:29:78.24:994,78,0 1/1:0,17:17:48.14:577,48,0 1/1:0,26:26:75.22:931,75,0 0/1:6,3:9:65.64:66,0,189 0/1:3,3:6:85.86:86,0,86 1/1:0,13:13:36.06:416,36,0 1/1:0,9:9:27.07:298,27,0 1/1:0,9:10:24.07:301,24,0 0/1:8,9:17:99:268,0,229 1/1:0,42:42:99:1293,111,0 1/1:0,29:29:84.22:996,84,0 1/1:0,16:16:45.13:549,45,0 1/1:0,19:19:54.15:618,54,0 1/1:0,17:18:51.11:578,51,0 1/1:0,25:26:69.18:805,69,0 0/1:8,9:17:99:260,0,191 1/1:0,24:24:66.19:800,66,0 0/1:26,21:47:99:599,0,749 0/1:10,12:22:99:379,0,215 0/0:32,0:32:84.24:0,84,1016 1/1:1,17:18:11.17:546,11,0 1/1:0,11:11:33.10:390,33,0 0/1:12,6:18:99:152,0,285 1/1:0,8:8:24.06:276,24,0 0/1:6,4:10:89.70:90,0,174 1/1:0,9:9:27.08:329,27,0 0/1:21,7:28:99:160,0,608 0/0:23,0:23:60.16:0,60,677 1/1:0,16:16:39.12:483,39,0 1/1:0,20:20:54.14:632,54,0 1/1:0,18:18:54.14:622,54,0 1/1:0,29:30:75.22:904,75,0 1/1:0,13:13:39.11:454,39,0 1/1:0,18:18:45.13:517,45,0 0/1:4,4:8:99:104,0,118 0/0:12,0:12:30.09:0,30,380 1/1:0,20:20:57.16:681,57,0 16 84229580 . C T 7078.57 . AC=25;AF=0.298;AN=84;BaseQRankSum=1.772;DP=877;Dels=0.00;FS=3.886;HRun=0;HaplotypeScore=0.5762;InbreedingCoeff=-0.0871;MQ=58.21;MQ0=0;MQRankSum=-0.059;QD=15.84;ReadPosRankSum=-0.550 GT:AD:DP:GQ:PL 1/1:0,8:8:21.07:268,21,0 0/1:7,8:15:99:245,0,149 0/0:14,0:14:39.11:0,39,453 0/0:53,0:53:99:0,150,1896 0/1:23,25:48:99:771,0,748 0/0:29,0:29:84.25:0,84,1060 0/1:11,8:19:99:251,0,245 0/0:26,0:26:75.18:0,75,902 0/0:9,0:9:27.07:0,27,301 0/0:12,0:12:36.09:0,36,414 0/1:9,3:12:69.52:70,0,239 0/0:3,0:4:9.02:0,9,100 0/0:13,0:13:36.10:0,36,436 0/0:11,0:12:33.10:0,33,398 0/1:21,22:43:99:591,0,537 0/1:15,14:29:99:420,0,460 0/1:4,7:11:99:226,0,118 0/0:17,0:17:51.13:0,51,581 0/0:33,0:33:90.24:0,90,1039 0/1:18,9:27:99:239,0,488 0/1:9,9:18:99:245,0,228 0/1:10,5:15:77.92:78,0,311 0/0:56,0:56:99:0,163,2072 0/1:8,9:17:99:293,0,217 0/0:32,0:33:84.26:0,84,1066 1/1:1,26:27:45.10:915,45,0 0/1:9,3:12:71.25:71,0,290 0/0:18,0:18:51.15:0,51,595 1/1:0,11:11:33.10:401,33,0 0/1:5,6:11:99:129,0,133 0/1:7,10:17:99:323,0,202 0/1:24,11:35:99:253,0,660 0/0:26,0:26:69.16:0,69,780 0/0:15,0:15:39.09:0,39,433 0/0:19,1:20:18.58:0,19,582 0/1:6,4:10:99:109,0,188 0/1:10,23:33:99:730,0,208 0/1:6,7:13:99:222,0,136 0/1:8,8:16:99:229,0,196 0/0:7,0:7:21.06:0,21,240 0/0:14,0:14:36.09:0,36,408 0/0:19,0:19:57.14:0,57,652 16 84230347 . G T 1414.52 . AC=3;AF=0.036;AN=84;BaseQRankSum=-8.408;DP=2754;Dels=0.00;FS=6.623;HRun=0;HaplotypeScore=2.0736;InbreedingCoeff=-0.0370;MQ=59.06;MQ0=0;MQRankSum=1.012;QD=10.72;ReadPosRankSum=-1.273 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,141,1747 0/0:45,0:45:99:0,126,1563 0/0:36,0:36:99:0,105,1275 0/0:167,0:167:99:0,451,5969 0/0:128,0:128:99:0,352,4704 0/0:91,0:91:99:0,247,3209 0/0:82,0:82:99:0,205,2725 0/0:104,0:104:99:0,274,3622 0/0:32,0:32:90.26:0,90,1105 0/1:25,12:38:99:286,0,766 0/0:31,1:32:87.27:0,87,1091 0/0:37,0:37:99:0,99,1243 0/0:30,0:30:81.24:0,81,1009 0/0:47,0:47:99:0,141,1722 0/0:127,0:127:99:0,337,4178 0/0:47,1:48:99:0,132,1609 0/0:41,0:41:99:0,111,1398 0/0:43,0:43:99:0,126,1526 0/0:85,1:86:99:0,223,2729 0/0:95,0:95:99:0,253,3220 0/0:91,0:91:99:0,250,3071 0/0:55,0:55:99:0,153,1885 0/0:174,0:174:99:0,466,6208 0/0:99,0:99:99:0,259,3390 0/0:105,0:105:99:0,289,3849 0/0:82,0:82:99:0,226,2919 0/0:49,0:49:99:0,135,1664 0/0:45,1:47:92.79:0,93,1492 0/0:44,0:44:99:0,120,1531 0/0:52,0:52:99:0,141,1756 0/0:43,0:43:99:0,123,1554 0/0:102,0:102:99:0,265,3290 0/0:36,1:37:64.03:0,64,1174 0/1:31,21:52:99:595,0,919 0/0:38,1:39:73.07:0,73,1253 0/1:18,24:42:99:609,0,490 0/0:74,1:75:99:0,208,2505 0/0:42,0:42:99:0,114,1401 0/0:45,0:45:99:0,126,1564 0/0:37,0:37:99:0,99,1235 0/0:39,0:39:99:0,114,1459 0/0:44,0:44:99:0,126,1546 16 84230500 . A C 2924.26 . 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G A 642.32 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.024;DP=1800;Dels=0.00;FS=2.638;HRun=0;HaplotypeScore=1.4431;InbreedingCoeff=-0.0245;MQ=59.19;MQ0=0;MQRankSum=-0.490;QD=11.07;ReadPosRankSum=0.670 GT:AD:DP:GQ:PL 0/0:31,0:31:87.26:0,87,1062 0/0:33,0:33:90.25:0,90,1053 0/0:22,0:22:57.15:0,57,668 0/0:109,0:109:99:0,253,3311 0/0:103,0:103:99:0,259,3337 0/0:59,0:59:99:0,153,1929 0/0:54,0:55:99:0,132,1659 0/0:70,0:70:99:0,187,2375 0/0:37,0:37:99:0,102,1211 0/0:23,0:23:63.17:0,63,743 0/0:20,0:20:54.15:0,54,636 0/0:25,0:25:66.20:0,66,817 0/0:13,0:13:39.10:0,39,447 0/0:21,0:21:60.18:0,60,717 0/0:108,0:109:99:0,274,3330 0/0:29,0:29:78.23:0,78,940 0/0:36,0:36:87.26:0,87,1076 0/0:22,0:22:54.11:0,54,635 0/0:48,0:48:99:0,120,1430 0/0:58,0:58:99:0,159,1886 0/0:61,0:62:99:0,144,1793 0/0:43,0:43:99:0,111,1350 0/0:109,0:109:99:0,274,3554 0/0:44,0:44:99:0,111,1403 0/0:80,0:80:99:0,199,2564 0/0:59,0:59:99:0,138,1775 0/0:22,0:22:60.17:0,60,720 0/0:28,0:28:69.20:0,69,828 0/0:24,0:24:69.16:0,69,799 0/0:26,0:26:72.17:0,72,822 0/0:26,0:26:75.23:0,75,923 0/0:50,0:50:99:0,135,1623 0/0:31,0:32:78.22:0,78,943 0/0:37,0:37:96.27:0,96,1153 0/0:28,0:28:72.17:0,72,843 0/0:35,0:35:84.23:0,84,1028 0/0:45,0:45:99:0,108,1355 0/0:25,0:25:72.18:0,72,819 0/0:26,0:26:75.21:0,75,901 0/1:17,13:31:99:316,0,475 0/0:17,1:18:22.59:0,23,562 0/1:12,15:27:99:389,0,343 16 84432176 . G A 4217.20 . 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C T 1018.40 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.283;DP=2424;Dels=0.00;FS=46.147;HRun=0;HaplotypeScore=3.4799;InbreedingCoeff=-0.0244;MQ=58.94;MQ0=0;MQRankSum=-0.606;QD=10.61;ReadPosRankSum=3.206 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,156,1897 0/0:35,0:35:96.29:0,96,1196 0/0:33,0:33:96.30:0,96,1194 0/0:128,0:129:99:0,322,4307 0/0:104,0:104:99:0,274,3704 0/0:81,0:81:99:0,229,2982 0/0:62,0:62:99:0,175,2343 0/0:62,0:62:99:0,166,2178 0/0:35,0:36:99:0,99,1240 0/0:51,0:51:99:0,141,1780 0/0:36,0:37:99:0,102,1243 0/0:42,0:42:99:0,123,1530 0/0:32,0:32:81.25:0,81,1018 0/0:51,0:51:99:0,135,1673 0/0:142,0:143:99:0,373,4639 0/0:34,0:34:84.26:0,84,1055 0/0:45,0:45:99:0,129,1581 0/1:19,20:39:99:509,0,556 0/1:31,25:57:99:572,0,842 0/0:82,0:82:99:0,223,2810 0/0:67,0:67:99:0,187,2344 0/0:47,0:47:99:0,135,1711 0/0:125,0:126:99:0,337,4499 0/0:78,0:79:99:0,205,2742 0/0:77,0:77:99:0,190,2583 0/0:71,0:71:99:0,193,2535 0/0:26,0:26:75.21:0,75,904 0/0:45,1:46:92.41:0,92,1508 0/0:31,0:31:87.23:0,87,1049 0/0:56,0:56:99:0,147,1837 0/0:43,0:43:99:0,120,1481 0/0:77,0:77:99:0,205,2568 0/0:41,0:41:99:0,111,1386 0/0:43,0:43:99:0,114,1407 0/0:53,0:53:99:0,156,1928 0/0:43,0:43:99:0,117,1452 0/0:55,0:56:99:0,147,1870 0/0:48,0:48:99:0,138,1664 0/0:39,0:39:99:0,111,1366 0/0:48,0:48:99:0,123,1544 0/0:44,0:44:99:0,120,1491 0/0:48,0:49:99:0,135,1665 16 84485573 . C A 127601.84 . AC=84;AF=1.000;AN=84;BaseQRankSum=3.004;DP=3846;DS;Dels=0.00;FS=5.387;HRun=0;HaplotypeScore=3.0273;InbreedingCoeff=-0.0000;MQ=58.62;MQ0=0;MQRankSum=0.188;QD=33.18;ReadPosRankSum=0.935 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1435,123,0 1/1:0,54:54:99:1712,147,0 1/1:0,55:58:99:1724,144,0 1/1:0,205:205:99:7123,578,0 1/1:0,202:202:99:6905,557,0 1/1:0,197:197:99:6502,509,0 1/1:0,149:149:99:5160,403,0 1/1:0,169:169:99:5809,466,0 1/1:0,71:71:99:2273,190,0 1/1:0,47:47:99:1449,126,0 1/1:0,41:41:99:1337,111,0 1/1:0,31:31:87.26:1048,87,0 1/1:0,53:53:99:1841,150,0 1/1:0,48:48:99:1615,135,0 1/1:1,188:189:99:6114,506,0 1/1:0,49:49:99:1748,147,0 1/1:0,51:51:99:1726,141,0 1/1:0,51:51:99:1687,141,0 1/1:1,99:100:99:3385,248,0 1/1:0,134:135:99:4438,373,0 1/1:0,129:129:99:4327,349,0 1/1:1,86:88:99:2663,226,0 1/1:0,213:213:99:7304,584,0 1/1:1,149:150:99:4881,388,0 1/1:2,176:179:99:6167,484,0 1/1:0,168:168:99:5590,442,0 1/1:0,43:43:99:1355,111,0 1/1:0,57:57:99:1912,159,0 1/1:0,53:53:99:1737,147,0 1/1:0,52:52:99:1719,141,0 1/1:0,40:40:99:1376,114,0 1/1:0,112:112:99:3536,286,0 1/1:0,78:78:99:2456,202,0 1/1:0,53:53:99:1579,132,0 1/1:0,58:58:99:1882,162,0 1/1:0,57:57:99:1842,150,0 1/1:0,105:107:99:3552,286,0 1/1:0,52:52:99:1755,150,0 1/1:0,56:56:99:1744,144,0 1/1:0,47:47:99:1576,132,0 1/1:0,53:53:99:1854,156,0 1/1:0,56:56:99:1764,147,0 16 84485677 . T A 2307.27 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.257;DP=2236;Dels=0.00;FS=2.752;HRun=0;HaplotypeScore=1.5769;InbreedingCoeff=-0.0244;MQ=59.01;MQ0=0;MQRankSum=0.626;QD=15.70;ReadPosRankSum=0.167 GT:AD:DP:GQ:PL 0/0:35,0:35:96.29:0,96,1178 0/0:45,0:45:99:0,132,1599 0/0:38,0:38:99:0,108,1280 0/0:109,1:110:99:0,292,3588 0/0:123,0:123:99:0,334,4055 0/0:74,0:74:99:0,205,2526 0/0:64,0:65:99:0,172,2132 0/0:89,0:89:99:0,226,2839 0/0:41,0:41:99:0,117,1407 0/0:37,0:38:99:0,99,1199 0/0:35,0:35:96.28:0,96,1153 0/0:41,0:41:99:0,108,1332 0/0:32,0:32:81.25:0,81,995 0/0:40,0:41:99:0,105,1286 0/0:123,0:123:99:0,322,3825 0/0:47,0:48:99:0,123,1515 0/0:42,1:43:99:0,105,1305 0/0:37,0:38:93.28:0,93,1142 0/1:23,49:73:99:1326,0,531 0/1:38,36:74:99:1043,0,921 0/0:45,0:46:99:0,129,1537 0/0:42,1:43:79.51:0,80,1305 0/0:127,0:130:99:0,337,4181 0/0:71,0:71:99:0,190,2334 0/0:77,0:77:99:0,208,2529 0/0:66,0:67:99:0,184,2272 0/0:23,0:23:66.16:0,66,760 0/0:30,0:30:75.23:0,75,921 0/0:31,0:31:90.24:0,90,1067 0/0:32,1:33:87.24:0,87,1049 0/0:30,0:30:75.22:0,75,895 0/0:56,0:56:99:0,150,1853 0/0:48,0:48:99:0,132,1534 0/0:41,0:41:96.27:0,96,1148 0/0:27,0:27:69.21:0,69,868 0/0:46,0:46:99:0,117,1425 0/0:53,0:53:99:0,144,1756 0/0:37,0:37:99:0,99,1184 0/0:45,0:45:99:0,129,1505 0/0:31,0:32:84.23:0,84,1004 0/0:31,0:31:87.26:0,87,1050 0/0:33,0:33:93.24:0,93,1111 16 84883102 . C T 53308.13 . AC=68;AF=0.810;AN=84;BaseQRankSum=-19.505;DP=2271;Dels=0.00;FS=13.345;HRun=0;HaplotypeScore=1.2024;InbreedingCoeff=-0.2353;MQ=56.76;MQ0=0;MQRankSum=-4.665;QD=23.47;ReadPosRankSum=-0.467 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1382,114,0 1/1:0,52:52:99:1781,147,0 0/1:18,12:30:99:348,0,550 0/1:73,55:129:99:1339,0,2081 0/1:58,31:89:99:761,0,1759 1/1:1,67:68:99:2221,181,0 0/1:57,21:78:99:505,0,1705 0/1:47,23:70:99:565,0,1452 1/1:0,46:47:99:1461,120,0 0/1:21,20:41:99:587,0,647 1/1:0,43:43:99:1374,114,0 1/1:0,33:33:99:1197,99,0 1/1:0,27:27:75.22:896,75,0 1/1:0,43:43:99:1420,117,0 1/1:0,158:158:99:4974,406,0 1/1:0,39:39:99:1268,105,0 1/1:0,33:33:96.29:1144,96,0 1/1:0,42:42:99:1360,114,0 1/1:0,58:58:99:1913,159,0 0/1:46,28:74:99:788,0,1232 1/1:0,47:47:99:1680,141,0 1/1:0,39:39:99:1181,99,0 0/1:65,68:133:99:1764,0,2032 1/1:0,51:51:99:1662,129,0 1/1:0,75:75:99:2429,193,0 1/1:0,53:53:99:1689,138,0 0/1:12,15:27:99:443,0,320 1/1:0,39:39:99:1298,108,0 0/1:18,14:32:99:383,0,535 1/1:1,29:30:44.80:879,45,0 1/1:0,41:41:99:1252,105,0 0/1:21,40:61:99:1091,0,510 1/1:0,61:61:99:1885,156,0 0/1:21,24:45:99:693,0,585 0/1:24,14:38:99:377,0,718 1/1:1,37:38:72.69:1186,73,0 0/1:31,25:57:99:658,0,915 0/1:16,33:49:99:912,0,428 0/1:20,17:37:99:480,0,566 1/1:0,43:43:99:1389,117,0 1/1:0,31:31:84.23:1013,84,0 1/1:0,48:48:99:1681,138,0 16 84906098 . C G 30800.78 . 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G A 3195.15 . 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C T 77174.20 . 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A G 55798.38 . 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T A 1404.39 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.865;DP=5346;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.9646;InbreedingCoeff=-0.0120;MQ=58.90;MQ0=0;MQRankSum=1.839;QD=12.32;ReadPosRankSum=-1.313 GT:AD:DP:GQ:PL 0/0:110,0:111:99:0,310,3856 0/0:85,0:85:99:0,244,3006 0/0:99,0:100:99:0,280,3456 0/0:247,0:247:99:0,695,8800 0/0:218,0:218:99:0,593,7656 0/0:178,0:178:99:0,482,6293 0/0:164,0:164:99:0,448,5744 0/0:170,0:170:99:0,466,6004 0/0:89,0:90:99:0,244,3045 0/0:73,0:73:99:0,208,2537 0/0:85,0:85:99:0,241,2992 0/0:95,0:95:99:0,250,3141 0/0:80,0:80:99:0,223,2746 0/0:109,0:109:99:0,304,3751 0/0:250,0:250:99:0,662,8284 0/0:94,0:94:99:0,268,3278 0/0:87,0:88:99:0,250,3083 0/0:72,0:73:99:0,193,2390 0/0:154,0:154:99:0,424,5273 0/0:193,0:193:99:0,497,6286 0/0:156,0:156:99:0,415,5239 0/0:148,0:148:99:0,412,5059 0/0:249,0:249:99:0,695,8836 0/0:163,0:163:99:0,436,5717 0/0:180,0:180:99:0,482,6253 0/0:162,0:162:99:0,445,5632 0/0:78,0:78:99:0,220,2756 0/0:92,0:92:99:0,244,3036 0/0:72,0:72:99:0,205,2558 0/0:97,0:97:99:0,274,3385 0/0:86,0:86:99:0,253,3126 0/0:177,0:177:99:0,454,5807 0/0:112,0:112:99:0,310,3817 0/0:88,0:88:99:0,247,2997 0/1:62,52:114:99:1451,0,1759 0/0:99,0:99:99:0,265,3294 0/0:141,0:141:99:0,385,4823 0/0:109,0:109:99:0,289,3634 0/0:77,0:77:99:0,220,2731 0/0:81,0:81:99:0,232,2876 0/0:99,0:99:99:0,277,3407 0/0:107,1:108:99:0,275,3738 16 85015541 . G A 25867.77 . 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C T 20720.31 . AC=25;AF=0.298;AN=84;BaseQRankSum=21.266;DP=2386;DS;Dels=0.00;FS=4.680;HRun=2;HaplotypeScore=2.4840;InbreedingCoeff=-0.0820;MQ=59.13;MQ0=0;MQRankSum=-0.563;QD=15.94;ReadPosRankSum=0.913 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,141,1539 0/0:45,0:45:99:0,120,1355 0/0:65,0:65:99:0,180,1971 0/1:47,34:81:99:928,0,1366 0/1:46,42:88:99:1262,0,1346 0/0:73,0:73:99:0,199,2346 0/1:32,23:55:99:672,0,866 0/0:75,0:75:99:0,217,2562 0/1:27,32:59:99:949,0,686 1/1:0,44:44:99:1515,126,0 0/1:25,17:42:99:421,0,626 0/1:28,21:49:99:541,0,728 0/0:43,0:43:99:0,111,1220 0/1:27,18:45:99:456,0,672 0/1:78,65:143:99:1790,0,1906 0/0:46,0:46:99:0,129,1426 1/1:1,49:50:99:1720,121,0 0/0:51,0:51:99:0,138,1516 0/0:86,0:86:99:0,238,2543 0/1:26,42:68:99:1154,0,596 1/1:0,71:71:99:2520,208,0 0/1:24,24:48:99:685,0,596 0/1:30,34:64:99:999,0,893 0/1:21,19:40:99:556,0,605 0/1:39,24:63:99:683,0,1068 0/0:47,0:47:99:0,132,1600 0/0:35,0:36:99:0,99,1083 0/1:11,25:36:99:697,0,237 0/0:36,0:36:99:0,102,1107 0/0:59,0:59:99:0,153,1708 0/1:23,15:38:99:385,0,633 0/1:46,44:90:99:1259,0,1161 0/0:62,0:63:99:0,171,1856 0/1:21,17:38:99:477,0,517 0/1:23,17:40:99:441,0,575 0/1:26,22:48:99:608,0,663 0/0:63,0:63:99:0,174,1884 0/0:51,0:51:99:0,138,1512 0/0:39,0:39:99:0,105,1165 0/0:57,0:57:99:0,162,1761 0/0:45,0:45:99:0,123,1356 0/0:55,0:55:99:0,153,1699 16 85711887 . C T 1094.56 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.717;DP=2383;DS;Dels=0.00;FS=1.301;HRun=0;HaplotypeScore=1.0562;InbreedingCoeff=-0.0120;MQ=59.01;MQ0=0;MQRankSum=-0.499;QD=15.64;ReadPosRankSum=1.622 GT:AD:DP:GQ:PL 0/0:57,0:58:99:0,162,1836 0/0:41,0:41:99:0,120,1359 0/0:57,0:57:99:0,162,1865 0/0:71,0:71:99:0,196,2350 0/0:74,0:74:99:0,214,2642 0/0:58,0:58:99:0,165,1965 0/0:63,0:63:99:0,171,2118 0/1:32,38:70:99:1141,0,899 0/0:63,0:63:99:0,174,1989 0/0:41,0:41:99:0,117,1290 0/0:48,0:48:99:0,138,1560 0/0:42,0:42:99:0,111,1270 0/0:45,0:45:99:0,123,1397 0/0:41,0:41:99:0,117,1343 0/0:154,0:155:99:0,415,4769 0/0:49,0:49:99:0,141,1589 0/0:51,0:51:99:0,150,1693 0/0:53,0:53:99:0,150,1708 0/0:66,0:66:99:0,187,2135 0/0:77,0:77:99:0,223,2567 0/0:74,0:75:99:0,208,2348 0/0:51,0:51:99:0,138,1568 0/0:76,0:76:99:0,220,2749 0/0:52,0:52:99:0,153,1916 0/0:67,0:67:99:0,190,2395 0/0:56,0:56:99:0,150,1849 0/0:38,0:38:99:0,111,1239 0/0:44,0:44:99:0,129,1466 0/0:36,0:36:99:0,105,1183 0/0:55,0:55:99:0,156,1772 0/0:43,0:43:99:0,126,1435 0/0:78,0:78:99:0,205,2309 0/0:54,0:54:99:0,156,1729 0/0:35,0:35:99:0,105,1148 0/0:37,0:37:99:0,99,1175 0/0:46,0:46:99:0,123,1393 0/0:64,0:65:99:0,186,2103 0/0:53,0:53:99:0,150,1706 0/0:39,0:39:99:0,105,1200 0/0:52,0:52:99:0,150,1648 0/0:53,0:53:99:0,141,1646 0/0:54,0:54:99:0,150,1721 16 85948098 . G A 739.54 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.377;DP=1916;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8189;InbreedingCoeff=-0.0244;MQ=59.38;MQ0=0;MQRankSum=1.224;QD=10.27;ReadPosRankSum=-0.838 GT:AD:DP:GQ:PL 0/0:29,0:29:75.23:0,75,941 0/0:36,0:36:99:0,105,1236 0/0:20,0:20:54.17:0,54,679 0/0:98,0:98:99:0,259,3367 0/0:97,0:97:99:0,250,3314 0/0:64,0:64:99:0,178,2273 0/0:49,0:49:99:0,123,1618 0/0:65,0:65:99:0,172,2231 0/0:20,0:21:57.18:0,57,699 0/0:33,0:33:93.25:0,93,1102 0/0:25,0:25:69.20:0,69,850 0/0:40,0:40:93.28:0,93,1166 0/0:36,0:36:93.27:0,93,1144 0/0:27,0:27:75.23:0,75,912 0/0:127,0:128:99:0,313,3860 0/0:31,0:31:90.24:0,90,1079 0/0:30,0:30:84.24:0,84,1027 0/0:37,0:37:99:0,105,1226 0/0:53,0:53:99:0,141,1740 0/0:54,0:54:99:0,147,1789 0/0:56,0:56:99:0,144,1694 0/0:49,0:49:99:0,126,1556 0/0:88,0:88:99:0,226,3004 0/0:45,0:45:99:0,111,1505 0/0:76,0:76:99:0,172,2309 0/0:66,0:66:99:0,169,2196 0/0:26,0:26:69.20:0,69,832 0/0:29,0:29:72.22:0,72,899 0/0:26,0:26:75.23:0,75,922 0/1:16,13:29:99:309,0,433 0/1:24,19:43:99:493,0,736 0/0:62,0:62:99:0,162,2006 0/0:49,0:49:99:0,123,1515 0/0:25,0:25:66.20:0,66,800 0/0:34,0:34:96.26:0,96,1143 0/0:38,0:38:99:0,102,1242 0/0:55,0:55:99:0,138,1689 0/0:37,1:38:65.33:0,65,1191 0/0:22,0:22:63.19:0,63,758 0/0:20,0:20:57.14:0,57,676 0/0:35,0:35:99:0,102,1232 0/0:32,0:32:81.23:0,81,1000 16 87365020 . G A 204.11 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.849;DP=969;Dels=0.00;FS=1.573;HRun=2;HaplotypeScore=0.2926;InbreedingCoeff=-0.0121;MQ=58.52;MQ0=0;MQRankSum=1.724;QD=12.01;ReadPosRankSum=-0.833 GT:AD:DP:GQ:PL 0/1:8,9:17:99:250,0,235 0/0:11,0:11:33.10:0,33,405 0/0:19,0:19:54.16:0,54,645 0/0:58,0:58:99:0,169,2099 0/0:51,0:51:99:0,153,1926 0/0:28,0:28:84.24:0,84,1066 0/0:34,0:34:99:0,99,1235 0/0:22,0:23:66.21:0,66,845 0/0:22,0:22:63.18:0,63,773 0/0:17,0:17:48.15:0,48,594 0/0:18,0:18:54.17:0,54,671 0/0:22,0:22:66.19:0,66,800 0/0:22,0:22:63.19:0,63,783 0/0:13,0:13:36.11:0,36,441 0/0:49,1:50:99:0,138,1700 0/0:11,0:11:33.10:0,33,402 0/0:20,0:20:57.17:0,57,702 0/0:14,0:14:39.12:0,39,475 0/0:18,1:19:54.16:0,54,655 0/0:32,0:32:81.24:0,81,1010 0/0:16,0:16:42.12:0,42,507 0/0:21,0:22:60.16:0,60,683 0/0:46,0:46:99:0,135,1742 0/0:17,0:17:51.16:0,51,652 0/0:39,0:39:99:0,117,1506 0/0:24,0:24:66.20:0,66,855 0/0:22,0:22:60.17:0,60,729 0/0:16,0:16:48.14:0,48,585 0/0:15,0:15:45.14:0,45,568 0/0:30,0:30:87.26:0,87,1042 0/0:18,0:18:45.13:0,45,546 0/0:27,0:27:78.22:0,78,924 0/0:23,0:23:66.18:0,66,779 0/0:12,0:12:36.11:0,36,451 0/0:18,0:18:51.15:0,51,623 0/0:22,0:22:63.16:0,63,750 0/0:22,0:23:63.18:0,63,751 0/0:17,0:17:51.14:0,51,603 0/0:13,0:13:36.11:0,36,446 0/0:17,0:17:48.15:0,48,582 0/0:11,0:11:33.10:0,33,405 0/0:20,0:20:60.19:0,60,750 16 87454310 . A G 879.09 . AC=3;AF=0.036;AN=84;BaseQRankSum=2.903;DP=1175;Dels=0.00;FS=1.685;HRun=1;HaplotypeScore=0.5566;InbreedingCoeff=0.6543;MQ=59.23;MQ0=0;MQRankSum=-0.249;QD=25.12;ReadPosRankSum=-0.576 GT:AD:DP:GQ:PL 0/0:23,0:23:69.20:0,69,834 0/0:30,0:30:78.24:0,78,965 0/0:29,0:29:63.20:0,63,828 0/0:25,0:25:63.20:0,63,827 0/0:26,0:26:75.24:0,75,964 0/0:21,0:21:57.17:0,57,723 0/0:22,0:22:57.18:0,57,727 0/0:16,0:16:48.15:0,48,602 0/0:26,0:26:69.22:0,69,865 0/0:22,0:22:57.18:0,57,712 0/0:23,0:23:60.18:0,60,729 0/0:23,0:23:60.18:0,60,734 0/0:19,0:19:57.17:0,57,689 0/0:31,0:31:84.26:0,84,1057 0/0:107,0:108:99:0,250,3201 0/0:19,0:19:48.15:0,48,604 0/0:28,0:28:72.21:0,72,897 0/0:23,0:23:66.20:0,66,811 0/0:37,0:37:99:0,99,1222 0/0:38,0:38:99:0,111,1339 0/0:40,0:40:99:0,102,1292 0/0:36,0:36:93.28:0,93,1150 0/0:26,0:26:75.24:0,75,952 0/0:15,0:15:39.12:0,39,516 0/0:23,0:23:54.18:0,54,720 0/0:18,0:18:48.15:0,48,625 0/0:18,0:18:48.14:0,48,585 0/0:26,0:26:75.21:0,75,910 0/0:35,0:35:87.28:0,87,1115 0/1:7,11:18:99:357,0,206 1/1:0,17:17:48.15:604,48,0 0/0:50,0:50:99:0,129,1619 0/0:36,0:36:93.26:0,93,1131 0/0:17,0:17:45.14:0,45,575 0/0:24,0:24:66.20:0,66,823 0/0:21,0:21:60.19:0,60,746 0/0:36,0:37:96.26:0,96,1153 0/0:27,0:27:78.24:0,78,949 0/0:27,0:27:72.21:0,72,871 0/0:25,0:25:72.22:0,72,882 0/0:25,0:25:63.19:0,63,799 0/0:25,0:25:66.19:0,66,808 16 87921846 . T A 9198.61 . AC=12;AF=0.143;AN=84;BaseQRankSum=11.267;DP=2165;Dels=0.00;FS=0.492;HRun=0;HaplotypeScore=0.6514;InbreedingCoeff=0.2222;MQ=48.31;MQ0=51;MQRankSum=0.330;QD=15.18;ReadPosRankSum=-1.173 GT:AD:DP:GQ:PL 0/0:41,0:42:99:0,111,1300 0/0:41,0:41:99:0,102,1186 0/0:39,0:39:99:0,108,1240 0/0:66,0:66:99:0,180,2114 0/1:36,34:70:99:1036,0,970 0/0:43,0:43:99:0,123,1531 0/0:39,1:40:78.22:0,78,1335 0/0:49,0:49:99:0,132,1595 0/0:45,0:45:99:0,126,1452 0/0:38,0:38:93.25:0,93,1077 0/0:38,0:38:99:0,102,1214 0/0:34,0:34:93.26:0,93,1094 0/1:19,12:31:99:310,0,452 0/0:47,0:47:99:0,132,1512 0/0:159,0:159:99:0,382,4611 0/0:46,0:46:99:0,114,1326 0/0:45,0:45:99:0,120,1399 0/1:31,22:53:99:652,0,747 1/1:0,62:62:99:1960,159,0 0/1:49,37:86:99:785,0,1211 0/0:79,0:79:99:0,223,2689 0/0:61,0:61:99:0,156,1856 0/1:44,27:71:99:712,0,1296 0/0:29,0:29:78.23:0,78,928 0/1:24,27:51:99:733,0,645 0/0:52,0:52:99:0,138,1680 0/0:40,0:40:99:0,108,1278 0/0:43,0:43:99:0,120,1391 0/0:46,0:46:99:0,120,1403 0/0:38,0:38:99:0,102,1234 0/0:42,0:42:99:0,111,1288 0/1:40,30:70:99:697,0,1124 0/0:48,0:48:99:0,132,1520 0/0:51,0:51:99:0,138,1627 0/0:33,0:33:87.22:0,87,1009 0/0:34,0:34:90.21:0,90,1029 0/1:29,30:59:99:752,0,684 1/1:1,52:53:99:1561,99,0 0/0:49,0:49:99:0,138,1634 0/0:48,0:48:99:0,135,1614 0/0:56,0:56:99:0,138,1618 0/0:38,0:38:99:0,105,1226 16 88052146 . C T 2885.95 . AC=10;AF=0.119;AN=84;BaseQRankSum=8.214;DP=1147;Dels=0.00;FS=2.188;HRun=0;HaplotypeScore=0.8229;InbreedingCoeff=-0.1351;MQ=55.59;MQ0=8;MQRankSum=3.941;QD=10.97;ReadPosRankSum=3.530 GT:AD:DP:GQ:PL 0/0:21,0:21:54.13:0,54,591 0/0:32,0:32:84.18:0,84,927 0/0:23,0:23:69.14:0,69,720 0/1:25,16:41:99:471,0,645 0/0:46,0:46:99:0,129,1556 0/1:16,18:34:99:475,0,470 0/0:26,0:26:78.18:0,78,894 0/1:20,13:33:99:376,0,532 0/1:10,16:26:99:490,0,243 0/1:11,7:18:99:161,0,264 0/0:26,0:26:72.17:0,72,787 0/0:24,0:24:69.15:0,69,731 0/0:21,0:21:42.07:0,42,451 0/0:23,0:23:66.15:0,66,710 0/0:79,0:79:99:0,204,2237 0/0:29,0:29:78.18:0,78,864 0/0:19,0:19:51.08:0,51,529 0/1:10,4:14:96.52:97,0,249 0/0:23,0:23:63.14:0,63,685 0/0:54,0:54:99:0,141,1626 0/1:18,8:26:99:187,0,422 0/1:14,10:24:99:251,0,394 0/1:19,15:34:99:436,0,554 0/0:17,0:17:51.13:0,51,590 0/0:23,0:23:63.16:0,63,729 0/0:28,0:28:81.24:0,81,958 0/0:16,0:16:48.10:0,48,501 0/0:23,0:23:54.10:0,54,552 0/0:19,0:19:48.09:0,48,508 0/0:24,0:24:57.11:0,57,615 0/0:24,0:24:69.17:0,69,767 0/0:38,0:40:90.24:0,90,1051 0/0:23,0:23:63.14:0,63,694 0/0:23,0:23:63.11:0,63,649 0/0:20,0:20:57.15:0,57,644 0/1:9,4:13:76.12:76,0,234 0/0:37,0:37:90.23:0,90,1019 0/0:25,0:25:63.16:0,63,704 0/0:29,0:29:81.18:0,81,880 0/0:27,0:28:78.15:0,78,829 0/0:23,0:23:60.15:0,60,671 0/0:16,0:16:39.09:0,39,413 16 88052161 . C A 24122.02 . AC=68;AF=0.810;AN=84;BaseQRankSum=-11.598;DP=940;Dels=0.00;FS=4.872;HRun=1;HaplotypeScore=0.5816;InbreedingCoeff=-0.2354;MQ=56.84;MQ0=2;MQRankSum=2.530;QD=25.66;ReadPosRankSum=0.573 GT:AD:DP:GQ:PL 1/1:0,19:19:54.13:638,54,0 0/1:11,13:24:99:379,0,270 0/1:11,11:22:99:259,0,327 1/1:0,32:32:96.25:1090,96,0 0/1:19,16:35:99:443,0,568 1/1:0,21:21:60.19:740,60,0 0/1:11,9:20:99:259,0,372 0/1:17,10:27:99:291,0,527 0/1:10,12:22:99:355,0,273 1/1:0,17:17:48.14:565,48,0 0/1:6,13:19:98.91:388,0,99 1/1:0,22:22:63.19:744,63,0 1/1:1,8:9:24.04:262,24,0 1/1:0,22:22:60.17:699,60,0 1/1:0,66:66:99:2179,184,0 0/1:12,14:26:99:414,0,349 1/1:0,17:17:51.12:594,51,0 1/1:0,14:14:42.12:486,42,0 1/1:0,22:22:60.18:738,60,0 1/1:1,50:51:99:1638,135,0 1/1:0,24:24:57.16:671,57,0 1/1:0,15:15:42.12:504,42,0 1/1:0,24:24:69.20:804,69,0 0/1:7,7:14:99:174,0,233 0/1:9,9:18:99:261,0,274 0/1:8,9:18:99:272,0,261 0/1:6,10:16:99:262,0,178 0/1:14,4:18:95.81:96,0,369 1/1:0,14:14:39.11:460,39,0 1/1:0,23:23:66.18:773,66,0 1/1:0,18:18:48.14:585,48,0 1/1:0,27:27:63.16:754,63,0 0/1:9,9:18:99:262,0,214 1/1:0,20:20:60.17:703,60,0 1/1:0,18:18:48.14:584,48,0 1/1:0,13:13:30.09:346,30,0 1/1:0,29:29:78.24:939,78,0 1/1:0,22:22:63.16:726,63,0 1/1:0,25:25:72.21:845,72,0 0/1:18,7:25:99:153,0,536 1/1:0,22:22:57.16:673,57,0 0/1:8,4:12:99:111,0,268 16 88598489 . C T 2676.63 . AC=6;AF=0.071;AN=84;BaseQRankSum=-3.462;DP=1476;Dels=0.00;FS=2.853;HRun=0;HaplotypeScore=1.2402;InbreedingCoeff=-0.0769;MQ=58.15;MQ0=0;MQRankSum=4.255;QD=12.28;ReadPosRankSum=2.141 GT:AD:DP:GQ:PL 0/0:19,0:19:51.14:0,51,588 0/0:19,0:19:51.13:0,51,593 0/0:21,0:21:54.15:0,54,636 0/0:91,0:91:99:0,223,2720 0/0:78,0:78:99:0,196,2421 0/0:48,0:48:99:0,117,1436 0/0:52,0:52:99:0,126,1523 0/1:35,28:63:99:633,0,828 0/1:15,8:23:99:219,0,403 0/1:5,13:18:99:357,0,110 0/0:22,0:22:60.16:0,60,690 0/0:26,0:26:60.17:0,60,702 0/0:17,0:17:45.14:0,45,558 0/0:22,0:22:60.16:0,60,685 0/0:56,0:56:99:0,150,1760 0/0:27,0:27:69.16:0,69,772 0/0:24,0:24:60.16:0,60,691 0/0:20,0:20:51.14:0,51,597 0/0:37,0:37:87.23:0,87,1004 0/0:54,0:54:99:0,144,1623 0/0:37,0:37:81.19:0,81,920 0/0:25,0:25:63.18:0,63,753 0/0:105,0:105:99:0,253,3081 0/1:20,19:39:99:466,0,554 0/0:55,0:55:99:0,135,1625 0/1:20,27:47:99:733,0,469 0/0:20,0:20:60.13:0,60,677 0/0:17,0:17:42.12:0,42,494 0/1:11,16:28:99:374,0,236 0/0:21,0:21:57.15:0,57,672 0/0:29,0:29:72.20:0,72,851 0/0:58,0:58:99:0,162,1830 0/0:23,0:23:63.19:0,63,780 0/0:23,0:23:54.13:0,54,618 0/0:21,0:21:45.12:0,45,517 0/0:29,0:29:81.19:0,81,911 0/0:41,0:41:99:0,105,1238 0/0:21,0:21:42.11:0,42,476 0/0:30,0:30:81.23:0,81,946 0/0:19,0:19:42.11:0,42,481 0/0:23,1:24:30.92:0,31,686 0/0:26,0:27:66.18:0,66,763 16 88598523 . G C 100.81 . AC=8;AF=0.095;AN=84;BaseQRankSum=-7.519;DP=1315;Dels=0.01;FS=254.459;HRun=2;HaplotypeScore=1.8699;InbreedingCoeff=-0.1316;MQ=58.06;MQ0=0;MQRankSum=3.298;QD=0.44;ReadPosRankSum=-8.908 GT:AD:DP:GQ:PL 0/0:17,8:25:29.47:0,29,566 0/0:12,6:18:30.09:0,30,368 0/1:10,7:17:49.97:50,0,223 0/1:55,38:93:28.03:28,0,1519 0/0:54,23:77:99:0,106,1595 0/0:49,15:64:99:0,129,1628 0/0:25,17:42:51.15:0,51,634 0/0:35,13:48:84.26:0,84,1060 0/0:15,5:20:12.48:0,12,412 0/0:15,6:21:7.46:0,7,377 0/0:7,6:13:15.05:0,15,190 0/0:14,9:23:33.09:0,33,379 0/0:12,8:21:30.09:0,30,358 0/0:15,5:20:29.30:0,29,323 0/0:37,11:48:90.25:0,90,1080 0/0:14,6:20:42.12:0,42,500 0/0:22,9:31:54.16:0,54,646 0/0:15,8:23:42.13:0,42,506 0/0:19,6:25:45.13:0,45,553 0/0:44,12:56:99:0,108,1296 0/0:22,9:31:20.48:0,20,525 0/0:15,12:27:2.84:0,0,318 0/0:42,15:57:82.77:0,83,1321 0/0:32,2:34:81.21:0,81,983 0/0:40,17:57:99:0,99,1236 0/0:21,10:31:57.16:0,57,710 0/1:15,5:20:23.13:23,0,340 0/1:6,3:9:15.39:15,0,158 0/0:6,7:13:18.06:0,18,218 0/0:16,2:18:36.11:0,36,451 0/0:12,6:18:0.39:0,0,263 0/0:41,19:60:59.99:0,60,1133 0/0:13,8:21:36.09:0,36,411 0/0:17,5:22:39.12:0,39,480 0/1:12,6:19:30.63:31,0,306 0/1:18,12:30:7.79:8,0,555 0/0:27,10:37:49.96:0,50,591 0/0:11,9:20:30.08:0,30,354 0/1:12,11:23:25.11:25,0,321 0/0:15,5:20:33.09:0,33,393 0/0:10,3:13:1.65:3,0,279 0/1:11,9:20:34.91:35,0,254 16 88620195 . T G 41975.69 . AC=55;AF=0.655;AN=84;BaseQRankSum=12.449;DP=2118;Dels=0.00;FS=0.868;HRun=0;HaplotypeScore=0.7808;InbreedingCoeff=-0.2113;MQ=58.07;MQ0=0;MQRankSum=-3.083;QD=21.29;ReadPosRankSum=-3.329 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1522,123,0 1/1:0,42:42:99:1327,102,0 1/1:0,42:42:99:1451,114,0 0/1:34,34:68:99:1012,0,1037 0/1:40,36:76:99:1091,0,1135 0/1:37,36:73:99:1202,0,1056 0/1:25,25:50:99:781,0,757 0/1:25,21:46:99:630,0,715 0/1:25,17:42:99:481,0,733 0/1:16,18:34:99:443,0,487 1/1:1,37:38:76.99:1311,77,0 1/1:0,43:43:99:1472,117,0 0/1:20,13:34:99:398,0,557 1/1:0,38:38:99:1330,108,0 0/1:92,80:172:99:2179,0,2367 1/1:0,45:45:99:1464,117,0 0/1:30,30:60:99:886,0,805 1/1:0,40:40:99:1419,114,0 0/1:30,22:53:99:600,0,853 0/1:25,31:56:99:766,0,648 0/1:33,35:68:99:979,0,888 0/0:34,0:34:90.28:0,90,1127 1/1:0,69:69:99:2478,184,0 0/0:46,0:46:99:0,126,1618 0/0:66,0:66:99:0,169,2178 0/1:33,22:55:99:644,0,945 1/1:0,35:35:99:1276,102,0 0/1:22,22:44:99:628,0,627 0/1:19,16:35:99:496,0,592 1/1:0,51:51:99:1717,135,0 1/1:0,55:55:99:1885,150,0 1/1:1,35:37:93.29:1189,93,0 1/1:0,39:39:99:1339,108,0 1/1:0,39:39:99:1386,111,0 0/1:13,25:38:99:773,0,347 0/1:24,30:54:99:801,0,662 0/1:24,22:46:99:646,0,697 0/1:23,21:44:99:611,0,637 0/1:18,21:39:99:624,0,491 1/1:0,45:45:99:1635,132,0 0/1:19,20:39:99:619,0,545 0/1:25,17:42:99:484,0,773 16 88620280 . A C 998.79 . 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T C 5692.90 . AC=16;AF=0.190;AN=84;BaseQRankSum=-10.173;DP=1563;Dels=0.00;FS=62.040;HRun=1;HaplotypeScore=1.1232;InbreedingCoeff=0.0735;MQ=58.64;MQ0=0;MQRankSum=0.060;QD=11.91;ReadPosRankSum=0.099 GT:AD:DP:GQ:PL 0/1:15,7:22:99:180,0,486 1/1:0,16:16:48.11:507,48,0 0/1:9,11:20:99:303,0,254 0/0:75,0:75:99:0,217,2627 0/0:69,0:69:99:0,208,2531 0/0:66,0:66:99:0,193,2405 0/0:49,0:49:99:0,141,1778 0/0:41,0:41:99:0,120,1491 0/0:35,0:35:99:0,99,1194 0/1:7,4:11:93.01:93,0,225 0/0:29,0:29:87.27:0,87,1059 0/0:36,0:36:99:0,105,1267 0/0:22,0:22:63.20:0,63,792 0/0:39,0:39:99:0,111,1352 0/1:42,35:77:99:822,0,1178 0/1:22,15:37:99:388,0,668 0/1:19,9:28:99:212,0,583 0/0:37,0:37:99:0,102,1202 0/0:48,0:48:99:0,117,1424 0/1:30,16:46:99:345,0,920 0/0:52,0:53:99:0,138,1649 0/0:21,0:21:63.16:0,63,742 0/1:41,25:66:99:731,0,1230 0/0:33,0:33:99:0,99,1231 0/0:56,0:56:99:0,163,2018 0/0:35,0:35:99:0,102,1237 0/0:20,1:21:60.19:0,60,747 0/0:23,0:23:60.19:0,60,732 0/0:24,0:24:63.18:0,63,753 0/1:18,10:28:99:208,0,561 1/1:0,29:29:84.20:944,84,0 0/1:21,17:38:99:434,0,637 0/0:40,0:40:99:0,117,1375 0/0:27,0:27:81.25:0,81,1004 0/0:29,1:30:51.62:0,52,913 0/0:34,0:34:99:0,99,1194 0/0:42,0:42:99:0,114,1373 0/0:22,0:22:60.18:0,60,729 0/0:43,0:44:99:0,126,1520 0/1:18,10:28:99:214,0,507 0/1:20,12:32:99:311,0,552 0/0:34,0:34:99:0,102,1239 16 88620338 . G GGGACGCACGCAGTGCAGAGCTGGGAC 13345.72 . 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A C 2267.88 . AC=13;AF=0.155;AN=84;BaseQRankSum=7.954;DP=2274;Dels=0.00;FS=23.128;HRun=1;HaplotypeScore=2.1044;InbreedingCoeff=-0.1831;MQ=58.04;MQ0=0;MQRankSum=-7.508;QD=2.94;ReadPosRankSum=-12.517 GT:AD:DP:GQ:PL 0/1:33,10:43:99:209,0,999 0/1:23,11:35:99:220,0,664 0/1:25,4:29:31.48:31,0,800 0/0:123,0:123:99:0,364,4335 0/0:100,0:101:99:0,289,3467 0/0:73,0:73:99:0,217,2623 0/0:83,0:83:99:0,247,2980 0/0:65,1:66:99:0,193,2322 0/0:37,0:37:99:0,108,1259 0/0:23,1:24:35.24:0,35,780 0/0:42,0:42:99:0,117,1399 0/0:46,0:46:99:0,132,1553 0/0:35,0:35:99:0,102,1206 0/0:36,0:36:99:0,99,1191 0/1:101,22:123:99:305,0,2982 0/1:51,9:60:99:145,0,1454 0/1:25,5:30:84.81:85,0,792 0/0:32,0:32:90.26:0,90,1068 0/0:66,0:66:99:0,174,2054 0/1:61,13:74:99:231,0,1845 0/0:60,0:61:99:0,168,1998 0/0:46,0:46:99:0,132,1575 0/1:97,27:124:99:586,0,2905 0/0:62,0:63:99:0,184,2201 0/0:84,0:84:99:0,235,2869 0/0:60,0:60:99:0,168,2037 0/0:23,0:23:66.20:0,66,792 0/0:26,0:26:75.22:0,75,895 0/0:29,0:29:81.24:0,81,968 0/1:31,9:40:99:159,0,867 0/1:35,12:48:99:224,0,1043 0/1:61,8:69:84.57:85,0,1801 0/0:50,0:50:99:0,147,1711 0/0:32,0:32:96.29:0,96,1142 0/0:34,0:34:99:0,102,1197 0/0:43,0:43:99:0,123,1417 0/0:62,0:62:99:0,177,2059 0/0:44,0:44:99:0,126,1489 0/0:43,0:43:99:0,129,1509 0/1:36,6:42:84.69:85,0,1061 0/1:47,7:54:51.46:51,0,1430 0/0:39,0:39:99:0,114,1350 16 88620387 . G A 2218.02 . 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G A 578.68 . AC=3;AF=0.036;AN=84;BaseQRankSum=4.012;DP=943;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.1316;InbreedingCoeff=-0.0371;MQ=57.93;MQ0=0;MQRankSum=-0.219;QD=10.52;ReadPosRankSum=-0.421 GT:AD:DP:GQ:PL 0/0:16,0:16:42.11:0,42,465 0/0:22,0:23:57.14:0,57,635 0/0:15,0:15:42.11:0,42,467 0/0:38,0:38:96.28:0,96,1158 0/0:39,0:39:99:0,117,1400 0/0:25,0:25:72.22:0,72,887 0/0:12,0:12:30.06:0,30,339 0/0:24,0:24:69.19:0,69,802 0/1:10,5:15:99:141,0,247 0/0:16,0:16:48.11:0,48,516 0/1:10,11:21:99:314,0,246 0/0:12,0:12:33.09:0,33,376 0/0:11,0:11:30.08:0,30,325 0/0:21,0:21:63.13:0,63,671 0/0:66,0:66:99:0,186,2054 0/0:20,0:20:57.16:0,57,648 0/0:15,0:15:45.10:0,45,473 0/0:24,0:24:69.15:0,69,749 0/0:31,0:31:90.22:0,90,996 0/0:39,0:39:99:0,108,1174 0/0:32,0:33:87.20:0,87,976 0/0:29,0:29:87.21:0,87,953 0/0:39,0:39:99:0,114,1364 0/0:15,0:15:36.08:0,36,435 0/0:23,0:23:63.16:0,63,742 0/1:11,8:19:99:199,0,305 0/0:12,0:12:33.09:0,33,374 0/0:11,0:11:33.07:0,33,350 0/0:16,0:16:45.11:0,45,500 0/0:14,0:14:39.09:0,39,429 0/0:18,0:18:48.12:0,48,533 0/0:30,0:30:84.23:0,84,971 0/0:18,0:18:48.13:0,48,548 0/0:16,0:16:45.11:0,45,488 0/0:20,0:20:51.13:0,51,579 0/0:23,0:23:66.17:0,66,733 0/0:31,0:31:90.24:0,90,1007 0/0:16,0:16:48.13:0,48,539 0/0:24,0:24:69.17:0,69,756 0/0:25,0:25:75.18:0,75,822 0/0:12,0:12:36.09:0,36,399 0/0:16,0:16:39.11:0,39,472 16 88689706 . T C 16.58 . 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G A 441.19 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.359;DP=821;Dels=0.00;FS=2.039;HRun=0;HaplotypeScore=0.6041;InbreedingCoeff=-0.0124;MQ=59.03;MQ0=0;MQRankSum=-0.133;QD=12.61;ReadPosRankSum=0.103 GT:AD:DP:GQ:PL 0/0:13,0:13:33.09:0,33,403 0/0:14,0:14:36.10:0,36,426 0/0:12,0:12:27.07:0,27,312 0/0:43,0:43:99:0,114,1397 0/0:29,0:29:72.22:0,72,910 0/0:20,0:20:48.15:0,48,620 0/0:36,1:37:81.21:0,81,995 0/0:24,0:24:63.18:0,63,770 0/0:10,0:10:27.08:0,27,309 0/0:18,0:18:48.10:0,48,529 0/0:13,0:13:33.09:0,33,393 0/0:16,0:16:42.12:0,42,510 0/0:19,0:19:45.11:0,45,510 0/0:16,0:16:42.13:0,42,528 0/0:62,0:62:99:0,162,1963 0/0:16,0:17:42.12:0,42,505 0/0:15,0:15:45.10:0,45,510 0/0:9,0:9:24.06:0,24,270 0/0:23,0:23:63.16:0,63,715 0/1:16,19:35:99:487,0,412 0/0:20,0:20:48.14:0,48,585 0/0:21,0:21:45.14:0,45,581 0/0:40,0:40:93.29:0,93,1193 0/0:15,0:15:39.12:0,39,490 0/0:25,0:25:60.19:0,60,780 0/0:22,0:22:51.16:0,51,669 0/0:18,0:18:48.13:0,48,560 0/0:8,0:8:21.06:0,21,253 0/0:11,0:11:27.07:0,27,320 0/0:24,0:24:66.18:0,66,771 0/0:18,0:18:45.11:0,45,511 0/0:17,0:17:45.12:0,45,519 0/0:16,0:16:39.11:0,39,477 0/0:16,0:16:48.11:0,48,535 0/0:13,0:13:33.09:0,33,390 0/0:18,0:18:48.13:0,48,544 0/0:14,0:14:27.08:0,27,335 0/0:11,0:11:30.07:0,30,345 0/0:16,0:16:39.11:0,39,463 0/0:12,0:12:33.09:0,33,387 0/0:9,0:9:27.08:0,27,316 0/0:12,0:12:33.09:0,33,393 16 88713213 . C G 1563.09 . AC=2;AF=0.024;AN=84;BaseQRankSum=6.332;DP=3063;Dels=0.00;FS=4.856;HRun=0;HaplotypeScore=2.6808;InbreedingCoeff=-0.0244;MQ=59.09;MQ0=0;MQRankSum=0.845;QD=10.56;ReadPosRankSum=0.794 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,129,1637 0/0:49,0:49:99:0,132,1660 0/0:39,0:39:99:0,108,1347 0/0:181,0:181:99:0,482,6413 0/0:149,0:149:99:0,394,5359 0/1:45,30:76:99:924,0,1305 0/1:47,25:72:99:701,0,1387 0/0:82,0:82:99:0,214,2880 0/0:49,0:49:99:0,126,1615 0/0:41,0:41:99:0,111,1400 0/0:45,0:45:99:0,120,1462 0/0:49,0:49:99:0,126,1581 0/0:49,0:49:99:0,123,1523 0/0:51,0:51:99:0,138,1725 0/0:207,0:207:99:0,481,6209 0/0:42,0:42:99:0,120,1510 0/0:53,0:53:99:0,150,1882 0/0:36,0:36:99:0,99,1243 0/0:125,0:125:99:0,322,4013 0/0:126,0:127:99:0,295,3764 0/0:98,0:99:99:0,250,3187 0/0:75,0:76:99:0,187,2336 0/0:166,0:166:99:0,415,5677 0/0:79,0:79:99:0,202,2749 0/0:93,0:93:99:0,247,3323 0/0:75,0:75:99:0,196,2638 0/0:43,0:43:99:0,99,1281 0/0:52,0:52:99:0,132,1688 0/0:54,0:54:99:0,138,1759 0/0:56,0:56:99:0,153,1922 0/0:40,0:40:99:0,108,1341 0/0:97,0:97:99:0,244,3081 0/0:72,0:72:99:0,187,2345 0/0:42,0:43:99:0,102,1316 0/0:42,0:42:99:0,111,1405 0/0:50,0:50:99:0,132,1667 0/0:112,0:112:99:0,286,3612 0/0:53,0:53:99:0,141,1796 0/0:43,0:43:99:0,120,1494 0/0:50,0:50:99:0,138,1729 0/0:38,0:38:99:0,99,1232 0/0:55,0:55:99:0,147,1863 16 88713236 . A G 42356.32 . AC=53;AF=0.631;AN=84;BaseQRankSum=25.400;DP=2207;Dels=0.00;FS=2.329;HRun=0;HaplotypeScore=2.3878;InbreedingCoeff=0.2331;MQ=59.09;MQ0=0;MQRankSum=0.750;QD=25.11;ReadPosRankSum=-1.832 GT:AD:DP:GQ:PL 0/1:21,14:35:99:394,0,509 0/1:22,18:40:99:473,0,597 0/0:31,1:32:84.21:0,84,949 0/0:124,0:125:99:0,346,3955 0/1:49,59:109:99:1882,0,1245 0/0:57,0:57:99:0,156,1848 0/1:17,35:52:99:1136,0,405 0/1:31,33:65:99:973,0,837 1/1:1,42:43:99:1439,114,0 1/1:0,25:25:60.19:780,60,0 0/1:18,15:33:99:385,0,464 1/1:1,32:33:56.59:985,57,0 1/1:0,40:40:99:1366,108,0 0/1:14,18:33:99:478,0,366 1/1:0,132:133:99:4441,355,0 0/1:16,14:30:99:420,0,465 1/1:0,42:42:99:1494,120,0 0/0:32,0:32:84.23:0,84,973 0/1:38,43:82:99:1151,0,1083 1/1:0,91:91:99:3038,247,0 0/1:31,26:58:99:655,0,807 1/1:0,54:54:99:1781,144,0 0/0:109,3:113:99:0,272,3413 1/1:0,60:60:99:2205,169,0 1/1:0,74:74:99:2749,211,0 1/1:0,48:48:99:1806,135,0 1/1:1,34:35:84.26:1062,84,0 1/1:0,46:46:99:1434,114,0 1/1:0,36:36:93.28:1171,93,0 0/1:24,17:41:99:451,0,617 1/1:0,26:26:78.23:952,78,0 0/0:70,0:72:99:0,174,2060 0/0:54,0:55:99:0,147,1699 0/1:16,16:32:99:493,0,393 0/0:34,0:34:84.24:0,84,1013 1/1:0,34:34:87.26:1104,87,0 0/1:41,36:77:99:947,0,1092 1/1:0,32:32:81.22:999,81,0 0/1:23,12:35:99:302,0,659 1/1:0,37:37:99:1309,105,0 0/1:12,13:25:99:396,0,305 1/1:0,51:51:99:1705,138,0 16 88717386 . T C 8654.73 . AC=84;AF=1.000;AN=84;DP=265;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2012;InbreedingCoeff=-0.0345;MQ=58.66;MQ0=0;QD=32.66 GT:AD:DP:GQ:PL 1/1:0,6:6:12.04:160,12,0 1/1:0,4:4:12.04:143,12,0 1/1:0,6:6:15.05:193,15,0 1/1:0,16:16:33.11:450,33,0 1/1:0,10:10:21.07:299,21,0 1/1:0,6:6:15.05:194,15,0 1/1:0,4:4:12.04:162,12,0 1/1:0,3:3:6.02:85,6,0 1/1:0,4:4:12.04:150,12,0 1/1:0,1:1:3.01:33,3,0 1/1:0,6:6:15.05:199,15,0 1/1:0,5:5:12.04:160,12,0 1/1:0,3:3:9.02:100,9,0 1/1:0,7:7:15.05:200,15,0 1/1:0,18:18:51.15:639,51,0 1/1:0,5:5:15.05:190,15,0 1/1:0,3:3:9.03:107,9,0 1/1:0,7:7:18.06:236,18,0 1/1:0,6:6:15.05:194,15,0 1/1:0,12:12:30.10:395,30,0 1/1:0,8:8:24.08:300,24,0 1/1:0,7:7:21.06:259,21,0 1/1:0,15:15:36.12:489,36,0 1/1:0,3:3:6.02:85,6,0 1/1:0,7:7:18.06:240,18,0 1/1:0,7:7:15.05:197,15,0 1/1:0,1:1:3.01:36,3,0 1/1:0,3:3:9.03:116,9,0 1/1:0,3:3:6.02:84,6,0 1/1:0,11:11:27.09:350,27,0 1/1:0,6:6:15.05:197,15,0 1/1:0,8:8:21.06:266,21,0 1/1:0,5:5:12.04:157,12,0 1/1:0,7:7:18.06:238,18,0 1/1:0,2:2:6.02:69,6,0 1/1:0,6:6:18.06:226,18,0 1/1:0,8:8:21.07:271,21,0 1/1:0,7:7:15.02:177,15,0 1/1:0,5:5:12.04:156,12,0 1/1:0,7:7:18.04:216,18,0 1/1:0,4:4:9.03:121,9,0 1/1:0,3:3:9.03:115,9,0 16 88752784 . A G 80.43 . AC=8;AF=0.095;AN=84;BaseQRankSum=-13.140;DP=739;Dels=0.00;FS=730.640;HRun=2;HaplotypeScore=0.5164;InbreedingCoeff=-0.1611;MQ=57.33;MQ0=0;MQRankSum=1.853;QD=0.87;ReadPosRankSum=-11.299 GT:AD:DP:GQ:PL 0/1:10,4:14:26.51:27,0,275 0/0:7,4:11:2.27:2,0,226 0/0:10,2:12:1.55:0,2,340 0/0:29,5:34:55.34:0,55,928 0/0:45,12:57:99:0,102,1621 0/0:18,3:21:50.83:0,51,614 0/0:23,8:31:69.22:0,69,875 0/0:18,4:22:24.68:0,25,664 0/0:11,4:15:32:0,32,362 0/1:8,5:13:38.38:38,0,233 0/0:8,2:10:20.80:0,21,224 0/1:7,4:11:21.31:21,0,231 0/0:16,6:22:20.53:0,21,481 0/0:9,0:9:27.06:0,27,319 0/0:35,6:41:43.28:0,43,1173 0/0:10,3:13:1.65:3,0,290 0/0:10,2:12:1.38:4,0,304 0/0:6,1:7:15.05:0,15,190 0/0:12,3:15:28.77:0,29,330 0/0:21,6:27:59:0,59,722 0/0:13,2:15:33.99:0,34,404 0/0:9,2:11:26.57:0,27,302 0/0:32,9:41:18.34:0,18,1019 0/0:18,7:25:23.83:0,24,496 0/0:19,7:26:56.36:0,56,677 0/0:15,6:21:10.36:0,10,537 0/0:13,5:18:6.90:0,7,312 0/0:13,0:13:39.12:0,39,484 0/1:6,3:9:5.42:5,0,170 0/1:8,2:10:13.72:14,0,230 0/0:9,3:12:2.53:1,0,282 0/1:10,6:16:27.33:27,0,198 0/1:9,4:13:4.26:4,0,299 0/0:10,5:15:26.45:0,26,309 0/0:16,4:20:45.38:0,45,513 0/0:15,2:17:45.13:0,45,548 0/0:15,3:18:45.14:0,45,565 0/0:10,1:11:6.39:0,6,309 0/0:5,1:6:13.28:0,13,151 0/1:3,3:6:46.89:47,0,91 0/0:5,2:7:15.05:0,15,187 0/0:10,2:12:1.97:2,0,293 16 88780090 . G A 17894.47 . AC=18;AF=0.214;AN=84;BaseQRankSum=-14.588;DP=2625;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.2030;InbreedingCoeff=0.0101;MQ=58.71;MQ0=0;MQRankSum=0.864;QD=16.71;ReadPosRankSum=0.957 GT:AD:DP:GQ:PL 0/1:32,38:70:99:1060,0,836 0/1:18,19:37:99:495,0,530 0/0:30,0:30:84.22:0,84,1009 0/0:160,0:160:99:0,457,5741 0/0:127,1:128:99:0,367,4663 0/1:41,50:91:99:1431,0,1220 0/1:50,43:93:99:1178,0,1499 0/1:28,53:81:99:1608,0,746 0/1:21,19:40:99:498,0,590 0/1:26,20:46:99:494,0,758 0/0:44,0:44:99:0,123,1491 0/0:35,0:35:99:0,99,1210 0/0:36,1:37:69.75:0,70,1230 0/0:41,0:41:99:0,108,1339 0/0:128,0:128:99:0,346,4235 0/0:61,0:61:99:0,168,2025 0/0:48,0:48:99:0,126,1454 0/0:40,0:40:99:0,111,1355 0/0:69,0:70:99:0,178,2166 0/1:44,40:85:99:1077,0,1238 0/1:28,49:77:99:1451,0,543 0/0:47,0:48:99:0,138,1638 0/1:79,75:154:99:2143,0,2344 0/0:88,0:88:99:0,238,3074 0/0:89,0:89:99:0,244,3115 0/0:78,0:78:99:0,220,2778 0/0:43,0:43:99:0,117,1398 0/0:33,0:33:96.29:0,96,1161 0/0:37,0:37:99:0,102,1210 0/0:36,0:36:93.28:0,93,1164 0/0:35,0:35:99:0,102,1248 1/1:0,77:77:99:2364,205,0 0/0:59,0:59:99:0,162,1973 0/1:21,24:45:99:630,0,623 1/1:0,43:43:99:1370,123,0 0/0:47,0:47:99:0,132,1624 0/1:22,25:47:99:676,0,602 0/1:21,21:42:99:574,0,564 0/0:50,0:50:99:0,129,1570 0/0:37,0:37:99:0,102,1238 0/1:12,31:43:99:846,0,291 0/0:52,0:52:99:0,135,1604 16 88780175 . G A 19746.11 . AC=12;AF=0.143;AN=84;BaseQRankSum=10.266;DP=4816;DS;Dels=0.00;FS=0.149;HRun=0;HaplotypeScore=5.6416;InbreedingCoeff=0.2222;MQ=59.16;MQ0=0;MQRankSum=-0.540;QD=18.79;ReadPosRankSum=2.254 GT:AD:DP:GQ:PL 0/0:95,0:95:99:0,256,2905 0/0:85,0:85:99:0,235,2691 0/0:72,0:72:99:0,196,2249 0/1:135,105:240:99:2806,0,3847 1/1:0,221:221:99:7177,578,0 0/0:207,0:207:99:0,527,6555 0/0:156,0:157:99:0,406,5033 0/0:168,1:169:99:0,427,5317 0/0:89,0:89:99:0,247,2803 0/0:76,0:76:99:0,198,2288 0/0:85,0:85:99:0,232,2657 0/1:24,47:71:99:1319,0,566 0/1:39,27:66:99:648,0,1031 0/0:78,0:78:99:0,214,2471 0/0:246,0:247:99:0,656,7616 0/0:103,0:103:99:0,280,3155 0/0:93,0:93:99:0,253,2863 0/0:81,0:81:99:0,235,2673 0/0:130,0:130:99:0,364,4105 0/0:143,0:143:99:0,364,4250 0/0:144,0:144:99:0,385,4393 0/1:49,45:94:99:1212,0,1307 0/0:243,0:243:99:0,620,7818 0/0:140,0:140:99:0,367,4552 0/0:166,0:166:99:0,439,5496 0/0:130,1:131:99:0,301,4086 1/1:0,75:75:99:2571,217,0 0/1:37,29:66:99:858,0,949 0/1:36,47:83:99:1349,0,979 0/1:37,31:68:99:892,0,961 0/1:36,31:67:99:914,0,925 0/0:151,0:152:99:0,379,4511 0/0:106,0:106:99:0,280,3184 0/0:88,0:88:99:0,229,2610 0/0:75,0:75:99:0,211,2382 0/0:110,0:110:99:0,292,3402 0/0:105,0:105:99:0,289,3228 0/0:73,0:74:99:0,190,2236 0/0:79,0:79:99:0,226,2522 0/0:90,1:91:99:0,235,2694 0/0:74,0:74:99:0,199,2322 0/0:77,0:77:99:0,214,2442 16 88781314 . C T 362.46 . 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T C 5593.32 . 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A G 5892.30 . 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A C 10.84 . 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A G 6424.67 . 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A C 1305.90 . 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C CGCATCCAGTCCAGGTGGGCCCTACTTTCTGTGTCT 9624.54 . 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G A 201.19 . 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G A 62955.24 . 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T C 3818.35 . AC=15;AF=0.179;AN=84;BaseQRankSum=1.075;DP=684;Dels=0.00;FS=1.624;HRun=0;HaplotypeScore=0.6268;InbreedingCoeff=0.1066;MQ=59.12;MQ0=0;MQRankSum=4.742;QD=19.28;ReadPosRankSum=-0.026 GT:AD:DP:GQ:PL 0/0:16,0:16:45.12:0,45,523 0/0:10,0:10:27.08:0,27,327 0/0:11,0:11:33.09:0,33,388 1/1:0,23:23:63.19:768,63,0 0/1:4,10:14:78.06:298,0,78 0/0:29,0:29:81.24:0,81,1009 0/0:12,0:12:33.10:0,33,418 0/1:4,12:16:79.03:361,0,79 0/0:14,0:14:42.13:0,42,501 0/0:15,0:15:42.12:0,42,496 0/0:11,0:11:33.09:0,33,380 0/1:7,4:11:99:105,0,186 0/0:15,0:15:42.12:0,42,495 0/1:6,6:12:99:169,0,151 0/0:48,0:49:99:0,129,1559 0/0:13,0:14:36.10:0,36,431 0/0:16,0:16:48.15:0,48,578 0/0:11,0:11:27.08:0,27,336 0/0:21,0:22:63.19:0,63,757 0/1:14,9:23:99:242,0,398 0/0:18,0:18:48.13:0,48,559 0/0:14,0:14:42.12:0,42,482 0/1:6,17:23:99:537,0,154 1/1:0,14:14:42.12:489,42,0 0/1:9,11:20:99:291,0,223 0/1:6,8:14:99:231,0,128 0/0:17,0:17:48.14:0,48,563 0/1:4,4:8:99:104,0,114 0/0:15,0:15:39.11:0,39,464 0/0:15,0:15:45.12:0,45,530 0/0:8,0:8:21.07:0,21,258 0/0:30,0:30:75.23:0,75,925 0/0:17,0:17:45.14:0,45,547 0/0:11,0:11:30.09:0,30,362 0/0:13,0:13:39.12:0,39,467 0/0:18,0:18:51.14:0,51,589 0/0:16,0:16:42.12:0,42,491 0/0:15,0:15:42.13:0,42,501 0/1:6,2:8:48.54:49,0,167 0/0:25,0:25:69.20:0,69,809 0/1:5,7:12:99:175,0,140 0/0:9,0:9:24.07:0,24,295 16 89256695 . G A 6392.50 . AC=21;AF=0.250;AN=84;BaseQRankSum=4.790;DP=776;Dels=0.00;FS=5.903;HRun=0;HaplotypeScore=0.5804;InbreedingCoeff=0.0473;MQ=58.58;MQ0=0;MQRankSum=0.280;QD=16.91;ReadPosRankSum=0.186 GT:AD:DP:GQ:PL 0/0:13,0:13:36.10:0,36,414 0/0:16,0:16:42.12:0,42,510 0/0:15,0:15:33.10:0,33,410 0/1:18,16:34:99:479,0,502 0/1:21,20:41:99:600,0,627 0/0:16,0:16:48.14:0,48,600 0/0:22,0:22:60.19:0,60,786 0/1:10,8:18:99:223,0,239 0/1:7,9:16:99:253,0,200 0/0:14,0:14:39.09:0,39,456 1/1:0,15:16:33.10:425,33,0 0/0:13,0:13:36.09:0,36,395 0/0:16,0:16:45.12:0,45,516 0/1:7,6:13:99:153,0,212 0/0:54,0:54:99:0,135,1621 0/0:22,0:22:57.15:0,57,690 0/0:14,0:14:42.11:0,42,463 0/0:16,0:16:45.12:0,45,513 0/0:20,0:20:45.12:0,45,517 0/1:10,16:26:99:441,0,288 0/1:10,14:24:99:418,0,257 0/0:13,0:13:39.11:0,39,459 0/1:18,23:41:99:695,0,476 0/0:23,0:23:60.16:0,60,731 0/0:16,0:16:48.13:0,48,580 0/0:14,0:14:42.12:0,42,491 0/1:9,7:16:99:183,0,277 0/0:9,0:9:27.07:0,27,307 1/1:0,15:15:33.10:428,33,0 0/1:5,8:13:99:242,0,126 0/0:13,0:13:36.09:0,36,409 0/1:17,17:34:99:536,0,356 0/1:8,7:15:99:215,0,183 0/1:8,9:17:99:229,0,214 0/1:7,8:15:99:217,0,188 0/0:11,0:11:33.08:0,33,366 0/0:13,0:13:39.10:0,39,437 0/0:11,0:11:33.09:0,33,373 0/0:14,0:14:39.10:0,39,447 0/1:4,7:11:99:203,0,102 1/1:0,13:13:36.11:454,36,0 0/0:10,0:10:27.07:0,27,319 16 89259993 . A G 6430.44 . AC=33;AF=0.393;AN=84;BaseQRankSum=7.212;DP=574;Dels=0.00;FS=5.621;HRun=2;HaplotypeScore=0.4291;InbreedingCoeff=0.0488;MQ=58.54;MQ0=0;MQRankSum=0.691;QD=21.65;ReadPosRankSum=-1.480 GT:AD:DP:GQ:PL 0/1:8,3:11:87.06:87,0,241 0/0:8,0:8:15.05:0,15,194 0/0:19,0:19:57.18:0,57,718 1/1:0,15:15:42.10:510,42,0 0/1:9,9:18:99:280,0,269 0/0:13,0:13:39.13:0,39,511 0/1:6,6:12:99:212,0,156 0/1:7,8:15:99:246,0,224 0/1:7,2:9:48.53:49,0,218 0/0:11,0:11:33.11:0,33,420 1/1:0,8:8:24.08:309,24,0 0/1:6,3:9:88.48:88,0,154 0/0:9,0:9:27.08:0,27,333 1/1:0,9:9:24.07:301,24,0 0/0:49,0:49:99:0,138,1747 0/0:22,0:22:63.17:0,63,767 0/0:11,0:11:30.10:0,30,380 0/0:11,0:11:30.09:0,30,367 0/0:20,0:20:51.15:0,51,621 0/1:8,17:25:99:471,0,228 0/1:8,11:19:99:323,0,229 0/0:15,0:15:42.11:0,42,517 1/1:0,19:19:57.19:776,57,0 1/1:0,4:4:12.04:164,12,0 0/1:2,6:8:55.23:162,0,55 0/1:2,4:6:61.95:144,0,62 0/1:3,2:5:62.84:63,0,94 0/1:4,8:12:99:264,0,114 1/1:0,6:6:18.06:231,18,0 0/1:6,6:12:99:185,0,153 0/0:11,0:11:30.10:0,30,384 0/1:6,13:19:99:379,0,146 0/1:6,7:13:99:225,0,153 0/1:4,3:7:90.26:90,0,132 0/1:1,6:7:16.73:200,0,17 0/0:17,0:17:36.07:0,36,454 0/0:28,0:28:78.24:0,78,992 0/0:14,0:14:39.12:0,39,482 0/1:2,6:8:42.17:208,0,42 0/1:8,1:9:12.23:12,0,267 1/1:0,12:12:36.11:451,36,0 0/0:19,0:19:45.14:0,45,573 16 89261482 . C A 1493.43 . AC=5;AF=0.060;AN=84;BaseQRankSum=3.667;DP=1213;Dels=0.00;FS=9.643;HRun=1;HaplotypeScore=1.3530;InbreedingCoeff=-0.0634;MQ=58.88;MQ0=0;MQRankSum=-0.492;QD=11.76;ReadPosRankSum=0.786 GT:AD:DP:GQ:PL 0/0:22,0:22:57.15:0,57,648 0/0:27,0:27:78.19:0,78,879 0/0:11,0:11:30.07:0,30,324 0/0:86,0:86:99:0,220,2803 0/0:77,0:78:99:0,202,2552 0/0:68,0:68:99:0,171,2166 0/0:49,0:49:99:0,120,1565 0/0:52,0:52:99:0,120,1567 0/0:21,0:21:57.17:0,57,677 0/0:15,0:15:42.11:0,42,482 0/0:15,0:15:42.10:0,42,475 0/1:6,8:14:99:259,0,141 0/0:8,0:8:24.07:0,24,281 0/1:10,9:19:99:273,0,256 0/0:55,0:55:99:0,147,1744 0/0:20,0:21:57.15:0,57,648 0/0:24,0:24:63.17:0,63,737 0/0:21,0:21:60.15:0,60,676 0/0:38,0:38:99:0,105,1197 0/0:41,0:41:99:0,99,1233 0/0:23,0:23:63.16:0,63,729 0/0:27,0:27:75.20:0,75,875 0/0:66,0:66:99:0,169,2121 0/1:22,11:33:99:301,0,642 0/1:25,16:41:99:486,0,680 0/0:46,0:46:99:0,120,1555 0/0:10,0:10:30.09:0,30,353 0/1:11,9:20:99:271,0,266 0/0:12,0:12:36.09:0,36,409 0/0:20,0:20:51.14:0,51,603 0/0:14,0:14:39.11:0,39,455 0/0:39,0:39:99:0,102,1199 0/0:24,0:24:63.15:0,63,733 0/0:18,0:18:48.14:0,48,561 0/0:11,0:11:33.10:0,33,385 0/0:22,0:22:63.18:0,63,732 0/0:26,1:27:41.49:0,41,691 0/0:19,0:19:54.15:0,54,616 0/0:15,0:15:36.11:0,36,446 0/0:15,0:15:39.10:0,39,432 0/0:10,0:10:30.07:0,30,335 0/0:16,0:16:48.13:0,48,537 16 89655120 . G A 740.72 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.937;DP=1460;Dels=0.00;FS=7.552;HRun=0;HaplotypeScore=1.5405;InbreedingCoeff=-0.0244;MQ=58.97;MQ0=0;MQRankSum=0.728;QD=15.12;ReadPosRankSum=1.489 GT:AD:DP:GQ:PL 0/0:22,0:22:60.16:0,60,683 0/0:33,0:33:87.25:0,87,1033 0/0:17,0:18:48.12:0,48,535 0/0:76,0:76:99:0,223,2718 0/0:57,0:57:99:0,162,1942 0/0:41,0:41:99:0,123,1492 0/0:37,0:37:99:0,102,1251 0/0:30,1:33:87.26:0,87,1072 0/1:11,9:20:99:270,0,289 0/1:10,19:29:99:533,0,243 0/0:23,0:23:66.16:0,66,739 0/0:22,0:22:60.15:0,60,674 0/0:16,0:16:42.09:0,42,450 0/0:24,0:24:69.19:0,69,773 0/0:100,0:100:99:0,271,2957 0/0:24,0:24:63.17:0,63,735 0/0:29,0:29:84.23:0,84,964 0/0:30,0:30:84.23:0,84,944 0/0:56,0:56:99:0,150,1691 0/0:47,0:48:99:0,129,1490 0/0:34,0:34:87.24:0,87,989 0/0:29,0:29:75.20:0,75,881 0/0:76,1:77:99:0,178,2609 0/0:48,0:48:99:0,132,1607 0/0:36,0:37:93.28:0,93,1162 0/0:32,0:32:87.25:0,87,1075 0/0:20,0:20:57.11:0,57,605 0/0:20,1:21:60.16:0,60,670 0/0:16,0:16:45.09:0,45,479 0/0:23,0:23:66.14:0,66,706 0/0:21,0:21:63.15:0,63,714 0/0:57,0:57:99:0,162,1868 0/0:34,0:34:96.25:0,96,1086 0/0:33,0:33:90.26:0,90,1065 0/0:27,0:27:75.13:0,75,806 0/0:25,0:25:72.20:0,72,827 0/0:41,0:41:99:0,108,1215 0/0:35,0:35:99:0,105,1194 0/0:26,0:26:72.20:0,72,807 0/0:31,0:31:87.23:0,87,980 0/0:23,0:23:66.15:0,66,721 0/0:32,0:32:93.22:0,93,1020 16 89661807 . C T 3522.49 . AC=7;AF=0.083;AN=84;BaseQRankSum=0.398;DP=1985;Dels=0.00;FS=2.338;HRun=0;HaplotypeScore=1.8245;InbreedingCoeff=-0.0909;MQ=58.69;MQ0=0;MQRankSum=2.624;QD=10.81;ReadPosRankSum=0.217 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,129,1509 0/0:39,0:39:99:0,105,1206 0/0:26,0:26:75.22:0,75,902 0/1:49,31:81:99:817,0,1338 0/1:29,20:49:99:560,0,822 0/0:51,0:51:99:0,132,1618 0/0:45,0:45:99:0,111,1279 0/0:39,0:40:99:0,102,1252 0/0:51,0:51:99:0,129,1470 0/0:35,0:35:93.25:0,93,1077 0/0:44,0:45:99:0,114,1277 0/1:25,16:41:99:348,0,678 0/0:38,0:38:99:0,102,1149 0/1:18,20:39:99:524,0,534 0/0:123,1:125:99:0,264,3439 0/0:54,0:55:99:0,153,1735 0/0:38,0:38:99:0,102,1156 0/0:32,0:32:90.21:0,90,1009 0/0:72,0:72:99:0,174,2017 0/0:71,0:71:99:0,174,2074 0/0:47,0:47:99:0,126,1447 0/0:48,0:48:99:0,129,1440 0/0:89,0:89:99:0,229,2739 0/1:21,17:38:99:452,0,606 0/1:25,10:35:99:215,0,656 0/0:33,0:33:78.22:0,78,959 0/0:32,0:32:93.26:0,93,1086 0/1:19,24:43:99:607,0,424 0/0:33,0:34:99:0,99,1166 0/0:47,0:47:99:0,129,1443 0/0:43,0:43:99:0,126,1435 0/0:65,0:65:99:0,162,1930 0/0:44,0:44:99:0,111,1290 0/0:40,0:41:99:0,114,1294 0/0:29,0:29:81.18:0,81,904 0/0:48,0:49:99:0,123,1474 0/0:49,0:49:99:0,114,1307 0/0:44,0:44:99:0,120,1310 0/0:38,0:38:99:0,102,1174 0/0:41,0:42:99:0,114,1293 0/0:30,0:30:81.22:0,81,948 0/0:43,0:43:99:0,117,1324 16 89702331 . C T 564.68 . AC=3;AF=0.036;AN=84;BaseQRankSum=-2.648;DP=1002;Dels=0.00;FS=1.745;HRun=1;HaplotypeScore=0.6440;InbreedingCoeff=-0.0373;MQ=58.48;MQ0=0;MQRankSum=-0.552;QD=10.08;ReadPosRankSum=-0.208 GT:AD:DP:GQ:PL 0/0:21,0:21:57.18:0,57,714 0/0:30,0:30:75.24:0,75,982 0/0:17,0:17:42.14:0,42,540 0/0:39,0:39:99:0,108,1407 0/0:32,0:32:90.30:0,90,1231 0/0:22,0:22:54.18:0,54,736 0/0:13,0:13:39.12:0,39,501 0/0:18,0:18:48.15:0,48,631 0/0:14,0:14:39.12:0,39,476 0/0:13,0:13:36.10:0,36,440 0/0:19,0:19:51.14:0,51,643 0/0:13,0:13:39.12:0,39,480 0/1:8,5:13:99:116,0,233 0/0:15,0:15:39.13:0,39,508 0/0:77,0:77:99:0,196,2492 0/0:22,0:22:66.20:0,66,815 0/0:30,0:30:81.24:0,81,1008 0/0:15,0:15:42.13:0,42,532 0/0:20,0:20:57.17:0,57,698 0/0:49,0:49:99:0,129,1648 0/0:33,0:33:87.26:0,87,1105 0/0:25,0:25:60.19:0,60,769 0/0:47,0:47:99:0,129,1738 0/0:17,0:17:51.16:0,51,663 0/0:19,0:19:48.14:0,48,626 0/0:8,0:8:18.05:0,18,234 0/0:17,0:18:48.15:0,48,617 0/0:18,0:18:51.15:0,51,625 0/0:22,0:22:57.18:0,57,726 0/1:15,9:24:99:213,0,427 0/1:9,10:19:99:311,0,268 0/0:37,0:37:99:0,102,1267 0/0:14,0:14:33.09:0,33,413 0/0:29,0:29:75.22:0,75,949 0/0:18,0:18:48.12:0,48,581 0/0:19,1:20:29.57:0,30,646 0/0:32,0:33:87.25:0,87,1076 0/0:24,0:24:66.20:0,66,823 0/0:23,0:23:66.20:0,66,827 0/0:26,0:26:63.20:0,63,795 0/0:15,0:15:39.12:0,39,491 0/0:21,0:21:51.16:0,51,641 16 89735871 . C T 2585.41 . AC=2;AF=0.024;AN=84;BaseQRankSum=-10.166;DP=2276;Dels=0.00;FS=16.815;HRun=0;HaplotypeScore=1.1976;InbreedingCoeff=-0.0244;MQ=58.94;MQ0=0;MQRankSum=0.425;QD=14.52;ReadPosRankSum=-0.044 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,108,1367 0/0:32,0:32:93.29:0,93,1164 0/0:28,0:28:75.21:0,75,929 0/0:121,0:121:99:0,349,4713 0/0:136,0:136:99:0,400,5402 0/1:50,47:97:99:1350,0,1671 0/1:38,43:81:99:1297,0,1175 0/0:90,0:90:99:0,256,3437 0/0:25,0:25:69.22:0,69,882 0/0:19,0:19:57.18:0,57,718 0/0:39,1:40:99:0,114,1411 0/0:37,0:37:99:0,108,1315 0/0:35,0:35:96.28:0,96,1194 0/0:34,0:34:99:0,99,1236 0/0:108,0:108:99:0,292,3568 0/0:38,0:38:99:0,105,1320 0/0:31,0:31:87.27:0,87,1089 0/0:34,0:34:99:0,102,1273 0/0:59,0:59:99:0,165,2028 0/0:78,0:78:99:0,220,2775 0/0:51,0:51:99:0,141,1763 0/0:34,0:34:96.29:0,96,1193 0/0:152,0:152:99:0,451,6145 0/0:78,0:78:99:0,223,3013 0/0:92,0:92:99:0,268,3603 0/0:65,0:66:99:0,184,2492 0/0:20,0:20:57.16:0,57,685 0/0:34,0:34:96.31:0,96,1214 0/0:34,0:34:99:0,99,1240 0/0:31,0:31:93.27:0,93,1162 0/0:39,0:39:99:0,114,1401 0/0:60,1:61:99:0,141,2103 0/0:59,0:59:99:0,156,1972 0/0:37,0:37:99:0,108,1340 0/0:33,0:33:93.27:0,93,1151 0/0:30,0:30:87.26:0,87,1068 0/0:63,0:63:99:0,187,2321 0/0:38,0:39:99:0,108,1346 0/0:27,0:27:81.24:0,81,991 0/0:41,0:41:99:0,120,1504 0/0:50,0:51:99:0,141,1764 0/0:44,0:44:99:0,114,1416 16 89753128 . C G 174.86 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.193;DP=429;Dels=0.00;FS=11.890;HRun=1;HaplotypeScore=0.3419;InbreedingCoeff=-0.0189;MQ=57.35;MQ0=0;MQRankSum=1.384;QD=14.57;ReadPosRankSum=-2.048 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,185 0/0:9,0:9:24.07:0,24,292 0/0:4,0:4:9.03:0,9,108 0/0:21,0:21:60.18:0,60,734 0/0:21,0:22:60.19:0,60,755 0/0:11,0:11:30.08:0,30,362 0/0:16,0:16:42.13:0,42,536 0/0:7,0:7:21.07:0,21,283 0/0:9,0:9:21.06:0,21,247 0/0:6,0:6:12.04:0,12,144 0/0:7,0:7:18.06:0,18,227 0/0:6,0:6:15.05:0,15,190 0/0:6,0:6:15.05:0,15,185 0/0:9,0:9:24.03:0,24,276 0/0:32,0:32:84.23:0,84,1014 0/0:11,0:11:30.09:0,30,361 0/0:6,0:6:15.05:0,15,186 0/0:11,0:11:30.09:0,30,369 0/0:11,0:11:30.08:0,30,351 0/0:12,0:13:33.10:0,33,419 0/0:11,0:11:24.07:0,24,277 0/1:5,7:12:99:221,0,149 0/0:18,0:18:51.15:0,51,624 0/0:9,0:9:18.06:0,18,243 0/0:8,1:9:24.08:0,24,308 0/0:9,0:9:21.06:0,21,271 0/0:6,0:6:18.05:0,18,221 0/0:8,0:8:24.07:0,24,280 0/0:7,0:7:18.06:0,18,227 0/0:15,0:15:42.12:0,42,517 0/0:12,0:12:30.04:0,30,319 0/0:10,0:10:30.09:0,30,373 0/0:12,0:12:24.07:0,24,301 0/0:6,0:6:18.03:0,18,191 0/0:12,0:12:33.10:0,33,415 0/0:9,0:9:27.08:0,27,326 0/0:8,0:8:21.07:0,21,263 0/0:10,0:11:24.07:0,24,290 0/0:5,0:5:15.03:0,15,170 0/0:4,0:4:12.04:0,12,147 0/0:9,0:9:24.07:0,24,285 0/0:5,0:5:15.05:0,15,185 16 89753130 . A T 163.70 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.581;DP=457;Dels=0.00;FS=9.047;HRun=0;HaplotypeScore=0.3581;InbreedingCoeff=-0.0160;MQ=57.46;MQ0=0;MQRankSum=1.014;QD=12.59;ReadPosRankSum=-1.519 GT:AD:DP:GQ:PL 0/0:6,0:6:18.06:0,18,219 0/0:10,0:10:27.08:0,27,331 0/0:5,0:5:15.04:0,15,166 0/0:21,0:21:60.16:0,60,704 0/0:22,0:22:60.19:0,60,747 0/0:11,0:11:30.09:0,30,359 0/0:16,0:16:42.13:0,42,524 0/0:8,0:8:24.07:0,24,285 0/0:9,0:9:27.07:0,27,312 0/0:7,0:7:18.05:0,18,211 0/0:7,0:7:18.06:0,18,225 0/0:7,0:7:18.06:0,18,219 0/0:7,0:7:15.05:0,15,181 0/0:10,0:10:30.09:0,30,359 0/0:35,0:35:93.27:0,93,1115 0/0:11,1:12:27.08:0,27,333 0/0:7,0:7:18.06:0,18,223 0/0:13,0:13:36.09:0,36,410 0/0:12,0:12:33.10:0,33,410 0/0:13,1:14:36.11:0,36,444 0/0:11,0:12:24.07:0,24,272 0/1:6,7:13:99:210,0,170 0/0:19,0:19:54.16:0,54,654 0/0:10,0:10:24.07:0,24,298 0/0:10,0:10:24.07:0,24,281 0/0:11,0:11:30.09:0,30,365 0/0:7,0:7:21.05:0,21,232 0/0:8,0:8:24.07:0,24,293 0/0:7,0:7:21.06:0,21,256 0/0:15,0:15:45.14:0,45,540 0/0:11,0:11:30.09:0,30,356 0/0:10,0:10:30.09:0,30,373 0/0:12,0:12:30.08:0,30,358 0/0:6,0:6:15.05:0,15,184 0/0:12,0:12:36.11:0,36,441 0/0:9,0:9:27.08:0,27,337 0/0:8,0:9:21.05:0,21,255 0/0:11,0:11:33.09:0,33,387 0/0:5,0:5:15.05:0,15,180 0/0:4,0:4:12.04:0,12,150 0/0:9,0:9:27.08:0,27,322 0/0:8,0:8:24.07:0,24,279 16 89793731 . C T 2773.66 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.379;DP=4824;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.3725;InbreedingCoeff=-0.0244;MQ=59.37;MQ0=0;MQRankSum=-1.167;QD=13.87;ReadPosRankSum=0.997 GT:AD:DP:GQ:PL 0/0:81,0:81:99:0,220,2607 0/0:80,0:80:99:0,205,2405 0/0:80,0:80:99:0,214,2522 0/0:214,0:214:99:0,542,6864 0/0:171,0:171:99:0,439,5698 0/0:174,0:174:99:0,436,5568 0/0:118,0:118:99:0,298,3797 0/0:134,0:134:99:0,352,4452 0/0:93,0:93:99:0,238,2845 0/0:65,0:65:99:0,168,1961 0/0:101,0:101:99:0,274,3226 0/0:84,0:84:99:0,232,2681 0/0:85,0:85:99:0,196,2392 0/0:83,0:83:99:0,226,2658 0/0:245,0:245:99:0,626,7512 0/0:75,0:75:99:0,211,2400 0/0:99,0:99:99:0,247,3011 0/0:80,0:80:99:0,214,2493 0/0:164,0:164:99:0,415,4896 0/0:171,0:171:99:0,451,5371 0/0:155,0:156:99:0,400,4796 0/0:90,0:90:99:0,241,2855 0/0:199,1:200:99:0,486,6621 0/0:133,0:133:99:0,334,4294 0/0:178,0:178:99:0,445,5807 0/0:156,0:156:99:0,376,4877 0/0:65,0:65:99:0,168,2004 0/0:94,0:94:99:0,265,3031 0/0:89,0:89:99:0,232,2758 0/0:111,0:111:99:0,298,3552 0/0:73,0:73:99:0,193,2253 0/0:146,0:146:99:0,370,4489 0/0:106,0:106:99:0,268,3170 0/0:77,0:77:99:0,208,2389 0/0:86,0:86:99:0,217,2615 0/0:115,0:115:99:0,298,3521 0/1:64,49:113:99:1416,0,1518 0/1:37,50:87:99:1420,0,933 0/0:98,0:98:99:0,265,3125 0/0:90,0:90:99:0,229,2703 0/0:81,0:81:99:0,217,2540 0/0:83,0:83:99:0,214,2537 16 89805093 . G A 267.21 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.152;DP=1096;Dels=0.00;FS=1.447;HRun=0;HaplotypeScore=0.7481;InbreedingCoeff=-0.0122;MQ=56.78;MQ0=0;MQRankSum=2.106;QD=14.06;ReadPosRankSum=-0.244 GT:AD:DP:GQ:PL 0/0:20,0:20:54.16:0,54,638 0/0:13,0:13:39.12:0,39,474 0/0:19,0:19:48.09:0,48,539 0/0:78,2:80:99:0,193,2753 0/0:66,1:67:99:0,163,2389 0/0:42,0:42:99:0,126,1563 0/0:33,0:33:93.27:0,93,1157 0/0:35,0:35:99:0,105,1306 0/0:14,0:14:36.07:0,36,401 0/0:14,0:14:39.11:0,39,453 0/0:22,0:22:66.19:0,66,773 0/0:9,0:9:27.04:0,27,286 0/0:10,0:10:30.06:0,30,348 0/0:16,0:16:48.14:0,48,575 0/0:29,0:29:66.18:0,66,762 0/1:8,11:19:99:313,0,234 0/0:18,0:18:48.14:0,48,576 0/0:21,0:21:60.15:0,60,700 0/0:24,0:25:69.20:0,69,800 0/0:35,0:35:90.26:0,90,1076 0/0:37,1:38:79.95:0,80,1254 0/0:21,0:21:57.18:0,57,702 0/0:77,0:77:99:0,226,2789 0/0:34,0:34:99:0,102,1256 0/0:49,0:49:99:0,141,1723 0/0:42,0:43:99:0,114,1458 0/0:20,0:20:60.13:0,60,660 0/0:16,0:16:48.14:0,48,564 0/0:18,0:18:54.13:0,54,615 0/0:19,0:19:48.15:0,48,599 0/0:15,0:15:45.13:0,45,533 0/0:34,0:34:96.26:0,96,1112 0/0:17,0:18:45.12:0,45,522 0/0:17,0:17:51.15:0,51,611 0/0:21,0:21:60.17:0,60,716 0/0:17,0:17:48.11:0,48,550 0/0:16,0:16:39.08:0,39,432 0/0:15,0:15:42.12:0,42,502 0/0:20,1:21:22.58:0,23,541 0/0:20,0:20:57.17:0,57,681 0/0:9,0:9:27.06:0,27,304 0/0:17,0:17:51.15:0,51,608 16 89805914 . T C 199.45 . AC=6;AF=0.075;AN=80;BaseQRankSum=-1.828;DP=163;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1695;InbreedingCoeff=-0.1433;MQ=58.74;MQ0=0;MQRankSum=-0.207;QD=7.12;ReadPosRankSum=-0.207 GT:AD:DP:GQ:PL 0/0:6,0:6:18.05:0,18,211 0/0:4,0:4:9.03:0,9,110 ./. 0/0:1,0:2:3.01:0,3,34 0/0:2,0:2:6.02:0,6,73 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:3.01:0,3,34 0/0:1,0:1:3.01:0,3,38 0/0:2,0:2:6.02:0,6,71 0/1:1,2:3:30.11:39,0,30 0/0:2,0:2:6.02:0,6,72 0/0:4,0:4:12.04:0,12,149 0/0:6,0:6:18.04:0,18,202 0/0:6,0:6:18.06:0,18,217 0/1:5,2:7:46.51:47,0,149 0/0:5,0:5:12.04:0,12,155 0/1:3,3:6:83.79:84,0,87 0/1:1,2:3:27.12:54,0,27 0/1:2,2:4:27.10:56,0,27 0/0:3,0:3:6.02:0,6,81 0/0:5,0:5:15.05:0,15,181 0/0:8,0:8:18.06:0,18,232 0/0:3,0:3:9.03:0,9,108 0/0:1,0:1:3.01:0,3,35 0/0:4,0:4:9.03:0,9,106 ./. 0/0:3,0:3:9.03:0,9,110 0/0:4,0:4:12.04:0,12,141 0/0:5,0:5:15.05:0,15,180 0/0:2,0:2:6.02:0,6,75 0/1:4,1:5:20.46:20,0,99 0/0:6,0:6:18.05:0,18,208 0/0:3,0:3:9.03:0,9,105 0/0:5,0:5:15.05:0,15,180 0/0:2,0:2:6.02:0,6,72 0/0:3,0:3:9.03:0,9,108 0/0:8,0:8:21.05:0,21,243 0/0:5,0:5:15.04:0,15,172 0/0:6,0:6:18.06:0,18,219 0/0:8,0:8:24.07:0,24,295 0/0:3,0:3:9.03:0,9,109 0/0:5,0:5:12.04:0,12,149 16 89805915 . G A 75.10 . AC=1;AF=0.013;AN=80;BaseQRankSum=-2.290;DP=165;Dels=0.00;FS=5.266;HRun=0;HaplotypeScore=0.1695;InbreedingCoeff=-0.0678;MQ=58.75;MQ0=0;MQRankSum=1.550;QD=15.02;ReadPosRankSum=-0.402 GT:AD:DP:GQ:PL 0/0:6,0:6:18.05:0,18,211 0/0:4,0:4:9.02:0,9,108 ./. 0/0:2,0:2:3.01:0,3,38 0/0:3,0:3:9.02:0,9,102 0/0:1,0:1:3.01:0,3,41 0/0:2,0:2:6.01:0,6,68 0/0:1,0:1:3.01:0,3,40 0/0:2,0:2:6.02:0,6,75 0/0:3,0:3:6.02:0,6,83 0/0:2,0:2:6.02:0,6,74 0/0:4,0:4:12.04:0,12,146 0/0:6,0:6:18.03:0,18,208 0/0:6,0:6:18.05:0,18,217 0/0:7,0:7:21.06:0,21,252 0/0:6,0:6:15.05:0,15,191 0/0:7,0:7:21.06:0,21,252 0/0:3,0:3:9.02:0,9,98 0/0:4,0:4:9.03:0,9,110 0/0:3,0:3:6.02:0,6,84 0/0:4,0:5:12.04:0,12,153 0/0:7,0:7:15.05:0,15,200 0/0:3,0:3:9.03:0,9,124 0/0:1,0:1:3.01:0,3,30 0/0:3,0:3:9.03:0,9,117 ./. 0/0:3,0:3:9.03:0,9,106 0/0:4,0:4:12.04:0,12,156 0/0:5,0:5:12.04:0,12,150 0/0:2,0:2:6.02:0,6,73 0/0:5,0:5:12.03:0,12,151 0/0:6,0:6:18.06:0,18,225 0/0:3,0:3:9.03:0,9,112 0/0:5,0:5:15.05:0,15,181 0/0:3,0:3:9.03:0,9,107 0/0:3,0:3:9.03:0,9,114 0/0:8,0:8:21.07:0,21,265 0/1:1,4:5:21.94:120,0,22 0/0:6,0:6:18.06:0,18,221 0/0:8,0:8:24.08:0,24,296 0/0:3,0:3:9.03:0,9,111 0/0:5,0:5:15.05:0,15,183 16 89825065 . G A 10727.44 . AC=6;AF=0.071;AN=84;BaseQRankSum=-15.252;DP=4390;DS;Dels=0.00;FS=15.896;HRun=1;HaplotypeScore=2.7133;InbreedingCoeff=-0.0769;MQ=59.36;MQ0=0;MQRankSum=-1.002;QD=14.38;ReadPosRankSum=-4.370 GT:AD:DP:GQ:PL 0/0:86,0:86:99:0,250,3102 0/0:74,0:74:99:0,217,2684 0/0:74,0:74:99:0,214,2698 0/0:177,0:177:99:0,494,6610 0/0:157,0:157:99:0,451,6092 0/0:129,0:130:99:0,367,4971 0/0:118,0:118:99:0,340,4559 0/0:117,0:117:99:0,325,4380 0/0:94,0:94:99:0,265,3360 0/1:46,42:88:99:1230,0,1293 0/0:96,0:96:99:0,268,3349 0/0:80,1:81:99:0,194,2835 0/0:61,0:61:99:0,172,2158 0/0:84,0:84:99:0,241,2997 0/1:108,139:247:99:4109,0,3110 0/0:76,0:76:99:0,214,2723 0/1:52,43:95:99:1323,0,1522 0/1:56,38:94:99:1035,0,1737 0/1:74,67:142:99:1957,0,2026 0/0:144,0:144:99:0,394,5019 0/0:155,0:155:99:0,430,5497 0/0:76,2:78:99:0,149,2638 0/0:163,0:163:99:0,460,6207 0/0:102,0:102:99:0,286,3851 0/0:128,0:129:99:0,364,4923 0/0:109,0:109:99:0,307,4065 0/0:75,0:75:99:0,208,2669 0/0:69,0:69:99:0,193,2444 0/0:67,0:67:99:0,199,2522 0/0:97,0:97:99:0,274,3455 0/1:45,35:80:99:1073,0,1432 0/0:127,0:127:99:0,340,4313 0/0:94,0:94:99:0,265,3369 0/0:88,0:88:99:0,259,3257 0/0:73,0:73:99:0,196,2478 0/0:86,0:86:99:0,235,2998 0/0:143,0:143:99:0,403,5010 0/0:84,1:85:99:0,238,2995 0/0:84,0:84:99:0,238,3037 0/0:95,0:95:99:0,262,3317 0/0:72,0:72:99:0,208,2609 0/0:83,0:83:99:0,238,2977 16 89833576 . G C 1346.42 . 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C T 17466.99 . 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C A 114.66 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.562;DP=248;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2095;InbreedingCoeff=-0.0430;MQ=58.26;MQ0=0;MQRankSum=0.433;QD=14.33;ReadPosRankSum=-0.504 GT:AD:DP:GQ:PL 0/0:7,0:7:21.07:0,21,268 0/0:4,0:4:12.04:0,12,144 0/0:4,0:4:12.04:0,12,150 0/0:9,0:9:27.09:0,27,344 0/0:3,0:3:9.03:0,9,121 0/0:2,0:2:6.02:0,6,80 0/0:5,0:5:15.05:0,15,190 0/0:5,0:5:15.05:0,15,192 0/0:4,0:4:12.03:0,12,141 0/0:9,0:9:24.07:0,24,303 0/0:3,0:3:9.03:0,9,116 0/0:6,0:6:18.06:0,18,221 0/0:7,0:7:15.05:0,15,197 0/0:6,0:6:15.05:0,15,181 0/0:19,0:19:45.13:0,45,549 0/0:3,0:3:9.03:0,9,114 0/0:10,0:10:24.07:0,24,298 0/0:6,0:6:18.06:0,18,230 0/0:9,0:9:24.05:0,24,282 0/0:14,0:14:36.11:0,36,464 0/0:2,0:2:6.02:0,6,72 0/0:5,0:5:15.05:0,15,185 0/0:9,0:9:24.08:0,24,318 0/0:3,0:3:6.02:0,6,81 0/0:6,0:6:12.04:0,12,152 0/0:4,0:4:12.04:0,12,151 0/0:4,0:4:9.03:0,9,110 0/0:4,0:4:12.04:0,12,143 0/0:6,0:6:18.05:0,18,217 0/0:1,0:1:3.01:0,3,39 0/0:4,0:4:9.03:0,9,109 0/0:3,0:3:9.03:0,9,117 0/0:8,0:8:24.07:0,24,290 0/1:3,5:8:88.86:161,0,89 0/0:5,0:5:15.04:0,15,179 0/0:5,0:5:15.04:0,15,183 0/0:10,0:10:27.08:0,27,319 0/0:5,0:5:15.05:0,15,192 0/0:8,0:8:21.07:0,21,268 0/0:3,0:3:9.03:0,9,110 0/0:4,0:4:12.04:0,12,155 0/0:6,0:6:18.06:0,18,222 16 89866043 . T C 32637.88 . 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A T 74.63 . 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A G 5785.41 . 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G A 5373.08 . 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C G 1244.27 . 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G A 2069.46 . 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G A 780.33 . 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C T 1131.18 . 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A G 46.12 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.788;DP=665;Dels=0.00;FS=1.784;HRun=1;HaplotypeScore=0.2865;InbreedingCoeff=-0.0130;MQ=58.88;MQ0=0;MQRankSum=-1.501;QD=3.84;ReadPosRankSum=0.225 GT:AD:DP:GQ:PL 0/1:8,4:12:92.33:92,0,243 0/0:23,0:23:63.20:0,63,777 0/0:9,0:9:27.08:0,27,322 0/0:16,0:16:39.12:0,39,479 0/0:16,0:16:45.14:0,45,543 0/0:16,0:16:45.14:0,45,569 0/0:16,0:16:42.13:0,42,533 0/0:12,0:12:30.07:0,30,366 0/0:13,0:13:30.09:0,30,362 0/0:10,0:10:30.09:0,30,372 0/0:10,0:10:30.09:0,30,361 0/0:8,0:8:24.06:0,24,282 0/0:20,0:20:48.15:0,48,623 0/0:7,0:7:21.07:0,21,257 0/0:63,0:63:99:0,159,1923 0/0:16,0:16:42.13:0,42,520 0/0:11,0:11:30.09:0,30,370 0/0:11,0:11:33.10:0,33,399 0/0:24,0:24:66.17:0,66,800 0/0:23,0:23:63.19:0,63,776 0/0:30,0:30:87.24:0,87,1035 0/0:14,0:14:42.08:0,42,460 0/0:26,0:26:63.19:0,63,782 0/0:11,0:11:27.09:0,27,345 0/0:14,0:14:39.11:0,39,460 0/0:16,0:16:42.13:0,42,531 0/0:8,0:8:21.07:0,21,260 0/0:15,1:16:18.45:0,18,483 0/0:14,1:15:39.10:0,39,452 0/0:8,0:8:21.07:0,21,265 0/0:10,0:10:27.09:0,27,344 0/0:32,0:32:87.27:0,87,1095 0/0:16,0:16:45.13:0,45,536 0/0:17,0:17:48.15:0,48,594 0/0:14,0:14:39.12:0,39,485 0/0:10,0:10:30.09:0,30,369 0/0:22,0:22:60.19:0,60,753 0/0:15,0:15:45.14:0,45,540 0/0:8,1:9:24.06:0,24,279 0/0:8,0:8:21.06:0,21,260 0/0:11,0:11:33.10:0,33,408 0/0:7,0:7:18.05:0,18,224 16 90109711 . A G 37944.96 . AC=53;AF=0.631;AN=84;BaseQRankSum=10.714;DP=1870;Dels=0.00;FS=21.603;HRun=0;HaplotypeScore=1.4859;InbreedingCoeff=0.0286;MQ=59.23;MQ0=0;MQRankSum=1.943;QD=23.26;ReadPosRankSum=-0.905 GT:AD:DP:GQ:PL 1/1:0,34:34:96.26:1139,96,0 1/1:0,28:28:75.23:919,75,0 0/1:14,12:26:99:362,0,421 1/1:0,100:100:99:3336,262,0 1/1:0,69:69:99:2433,190,0 0/1:21,40:61:99:1138,0,557 1/1:0,58:59:99:1730,135,0 0/1:28,23:51:99:555,0,786 0/0:39,0:39:99:0,111,1299 0/1:24,12:36:99:318,0,686 0/1:17,19:36:99:541,0,473 1/1:1,33:34:58.02:1059,58,0 1/1:0,21:21:63.19:758,63,0 1/1:0,25:26:72.22:880,72,0 1/1:0,114:114:99:3511,292,0 1/1:0,38:38:99:1315,111,0 0/1:17,13:30:99:345,0,505 1/1:0,29:29:87.26:1047,87,0 1/1:0,50:51:99:1639,135,0 0/1:26,29:56:99:823,0,691 0/0:72,0:72:99:0,187,2189 0/1:23,15:38:99:412,0,595 1/1:0,95:95:99:3171,244,0 1/1:0,45:45:99:1574,129,0 0/1:33,34:67:99:978,0,828 0/1:29,25:54:99:738,0,733 0/0:24,0:25:63.18:0,63,734 0/1:17,9:26:99:201,0,478 0/1:19,10:29:99:272,0,571 0/1:16,25:41:99:693,0,417 1/1:0,33:33:90.27:1116,90,0 0/1:25,27:52:99:731,0,669 0/0:38,0:38:99:0,102,1207 0/1:16,15:31:99:438,0,441 1/1:0,28:28:72.18:875,72,0 0/1:20,18:38:99:448,0,562 0/1:29,25:54:99:663,0,778 1/1:0,33:33:87.26:1071,87,0 0/0:29,1:30:49.45:0,49,954 0/1:22,14:36:99:373,0,635 0/1:19,12:32:99:342,0,553 0/0:35,0:35:99:0,99,1172 16 90124871 . G T 9264.85 . AC=4;AF=0.048;AN=84;BaseQRankSum=-16.584;DP=5849;DS;Dels=0.00;FS=2.172;HRun=2;HaplotypeScore=2.1313;InbreedingCoeff=-0.0500;MQ=55.03;MQ0=1;MQRankSum=10.856;QD=14.19;ReadPosRankSum=-0.842 GT:AD:DP:GQ:PL 0/0:123,0:123:99:0,343,4276 0/0:115,0:115:99:0,313,3901 0/0:93,0:93:99:0,271,3389 0/0:239,0:239:99:0,665,8854 0/0:201,0:201:99:0,572,7715 0/0:202,0:202:99:0,578,7769 0/0:186,0:186:99:0,512,6884 0/0:169,0:169:99:0,470,6306 0/0:106,1:107:99:0,271,3695 0/0:99,1:100:99:0,247,3496 0/0:82,0:82:99:0,238,2970 0/0:107,0:107:99:0,310,3826 0/0:84,0:84:99:0,238,2945 0/0:103,0:103:99:0,289,3592 0/1:131,118:249:99:3341,0,3790 0/0:92,0:92:99:0,262,3272 0/1:62,51:113:99:1355,0,1824 0/1:51,60:111:99:1752,0,1506 0/1:84,96:180:99:2817,0,2232 0/0:204,0:204:99:0,533,6839 0/0:226,1:227:99:0,611,7738 0/0:128,0:128:99:0,349,4410 0/0:234,0:234:99:0,650,8777 0/0:176,0:176:99:0,485,6509 0/0:193,0:193:99:0,548,7377 0/0:183,0:183:99:0,524,7002 0/0:96,0:96:99:0,271,3349 0/0:105,0:105:99:0,295,3656 0/0:89,0:89:99:0,259,3224 0/0:108,0:108:99:0,298,3780 0/0:100,0:100:99:0,280,3521 0/0:163,0:163:99:0,448,5719 0/0:111,0:111:99:0,289,3713 0/0:119,0:119:99:0,337,4230 0/0:106,0:106:99:0,298,3734 0/0:122,0:122:99:0,340,4304 0/0:174,0:174:99:0,466,5854 0/0:119,0:119:99:0,337,4193 0/0:123,0:123:99:0,349,4359 0/0:106,0:106:99:0,298,3701 0/0:96,2:98:99:0,199,3214 0/0:109,0:109:99:0,301,3821 16 90130136 . C T 13257.49 . AC=15;AF=0.179;AN=84;BaseQRankSum=-17.874;DP=2313;Dels=0.00;FS=5.715;HRun=1;HaplotypeScore=0.7150;InbreedingCoeff=-0.0551;MQ=59.41;MQ0=0;MQRankSum=1.249;QD=16.59;ReadPosRankSum=0.309 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,135,1723 0/1:23,21:44:99:631,0,718 1/1:0,50:50:99:1758,141,0 0/0:68,0:68:99:0,196,2659 0/0:74,0:74:99:0,214,2948 0/0:58,0:58:99:0,175,2357 0/0:56,0:56:99:0,163,2212 0/0:67,0:67:99:0,193,2597 0/0:40,0:40:99:0,117,1495 0/1:14,24:38:99:729,0,359 0/1:28,24:52:99:708,0,892 0/1:24,27:51:99:839,0,722 0/0:38,0:38:99:0,111,1406 0/1:20,18:38:99:551,0,660 0/1:78,63:141:99:1842,0,2459 0/0:34,0:34:99:0,102,1295 0/1:20,17:37:99:527,0,650 0/1:18,26:44:99:826,0,565 0/1:37,42:80:99:1302,0,1122 0/0:83,0:83:99:0,226,2892 0/0:87,0:87:99:0,244,3135 0/1:22,35:57:99:1023,0,675 0/0:70,0:70:99:0,202,2792 0/1:31,35:66:99:1162,0,1024 0/1:32,29:61:99:885,0,1148 0/0:54,0:54:99:0,163,2213 0/0:26,0:26:75.24:0,75,969 0/1:24,16:40:99:475,0,740 0/0:50,0:50:99:0,141,1822 0/0:57,0:57:99:0,166,2095 0/0:49,0:49:99:0,141,1823 0/0:58,0:58:99:0,169,2161 0/0:55,0:55:99:0,160,2016 0/0:53,0:53:99:0,157,2009 0/0:42,0:42:99:0,123,1557 0/0:51,0:51:99:0,150,1925 0/0:67,0:67:99:0,184,2343 0/0:53,0:53:99:0,156,1999 0/0:52,0:52:99:0,153,1974 0/0:47,0:47:99:0,135,1738 0/0:34,0:34:99:0,99,1267 0/0:44,0:44:99:0,129,1663 17 295630 . A T 9.89 . AC=1;AF=0.013;AN=80;BaseQRankSum=-0.685;DP=150;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0861;InbreedingCoeff=-0.0868;MQ=59.00;MQ0=0;MQRankSum=-0.602;QD=1.98;ReadPosRankSum=-1.658 GT:AD:DP:GQ:PL 0/0:3,0:3:9.03:0,9,105 0/0:1,0:1:3.01:0,3,36 0/0:2,0:2:6.02:0,6,73 0/0:4,0:4:12.04:0,12,140 ./. 0/0:4,0:4:12.04:0,12,147 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.01:0,9,97 0/0:4,0:4:6.02:0,6,75 0/0:5,0:5:9.03:0,9,124 0/0:2,0:2:6.02:0,6,69 0/0:4,0:4:9.03:0,9,107 0/0:2,0:2:6.02:0,6,68 0/0:4,0:4:12.03:0,12,140 0/0:12,0:12:30.09:0,30,356 0/0:6,0:6:18.05:0,18,205 0/0:3,0:3:9.03:0,9,105 0/0:1,0:1:3.01:0,3,31 0/0:8,0:8:21.06:0,21,258 0/0:6,0:6:15.02:0,15,175 0/0:4,0:4:12.04:0,12,143 0/0:1,0:1:3.01:0,3,35 0/0:10,0:10:30.09:0,30,353 0/0:4,0:4:12.04:0,12,142 0/0:2,0:2:6.02:0,6,72 0/0:1,0:1:3.01:0,3,35 0/0:2,0:2:6.02:0,6,70 0/0:4,0:4:12.04:0,12,141 0/0:1,0:1:3.01:0,3,35 0/0:3,0:3:9.03:0,9,103 0/0:4,0:4:12.04:0,12,146 0/0:7,0:7:18.06:0,18,221 0/1:3,2:5:54.56:55,0,91 0/0:2,0:2:3.01:0,3,45 0/0:2,0:2:6.01:0,6,63 0/0:4,0:4:9.03:0,9,117 0/0:6,0:6:15.05:0,15,188 0/0:3,0:3:9.03:0,9,104 0/0:4,0:4:12.04:0,12,142 0/0:3,0:3:9.02:0,9,103 ./. 0/0:3,0:3:9.01:0,9,94 17 463696 . C T 1379.91 . 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A C 3637.01 . 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G T 3790.70 . 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C A 5128.38 . 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G C 1234.18 . 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C T 37071.53 . 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C T 2535.31 . 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C G 84.95 . 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G A 750.40 . AC=3;AF=0.036;AN=84;BaseQRankSum=-5.648;DP=935;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7913;InbreedingCoeff=-0.0375;MQ=57.67;MQ0=0;MQRankSum=2.543;QD=12.72;ReadPosRankSum=-0.880 GT:AD:DP:GQ:PL 0/0:7,0:7:18.06:0,18,226 0/0:22,0:22:66.20:0,66,797 0/0:13,0:13:39.12:0,39,473 0/0:43,0:43:99:0,120,1599 0/0:47,0:47:99:0,129,1716 0/0:23,1:24:26.22:0,26,773 0/0:30,0:30:78.23:0,78,1025 0/0:33,0:33:93.27:0,93,1188 0/0:24,0:24:63.19:0,63,777 0/0:9,0:9:18.04:0,18,216 0/0:11,0:11:30.09:0,30,368 0/0:13,0:13:36.11:0,36,450 0/0:23,0:23:69.20:0,69,823 0/0:19,0:19:48.15:0,48,596 0/0:64,0:64:99:0,162,2031 0/0:28,0:28:81.23:0,81,971 0/0:16,0:16:48.15:0,48,596 0/0:13,0:13:39.11:0,39,468 0/0:16,0:16:45.14:0,45,570 0/0:27,0:27:69.21:0,69,837 0/0:32,0:32:75.23:0,75,939 0/0:18,0:18:54.16:0,54,659 0/0:45,0:45:99:0,132,1785 0/1:8,13:21:99:381,0,248 0/0:26,0:26:69.22:0,69,919 0/1:13,12:25:99:308,0,376 0/0:14,0:14:39.12:0,39,494 0/1:8,5:13:99:137,0,258 0/0:13,0:13:36.11:0,36,446 0/0:19,0:19:51.15:0,51,618 0/0:13,0:13:36.11:0,36,454 0/0:34,0:34:93.29:0,93,1192 0/0:28,0:28:72.23:0,72,927 0/0:12,0:12:36.11:0,36,433 0/0:16,0:16:42.13:0,42,517 0/0:15,0:15:42.12:0,42,506 0/0:22,0:22:60.17:0,60,709 0/0:17,0:17:45.13:0,45,550 0/0:18,0:18:45.14:0,45,570 0/0:12,0:12:36.11:0,36,437 0/0:18,0:18:51.15:0,51,634 0/0:22,0:22:63.20:0,63,788 17 1359345 . C T 329.54 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.784;DP=593;Dels=0.00;FS=4.384;HRun=0;HaplotypeScore=0.8515;InbreedingCoeff=-0.0328;MQ=57.59;MQ0=0;MQRankSum=1.690;QD=12.21;ReadPosRankSum=-0.125 GT:AD:DP:GQ:PL 0/0:5,0:5:12.04:0,12,152 0/0:7,0:7:21.07:0,21,259 0/0:3,0:3:6.01:0,6,59 0/0:32,0:32:87.27:0,87,1133 0/0:30,0:30:69.18:0,69,866 0/0:32,0:32:87.26:0,87,1113 0/0:19,0:19:48.15:0,48,641 0/0:23,0:23:60.19:0,60,769 0/0:14,0:14:36.07:0,36,427 0/0:10,0:10:21.07:0,21,258 0/0:5,0:5:12.04:0,12,153 0/0:10,0:10:27.08:0,27,331 0/0:6,0:6:15.02:0,15,166 0/0:5,0:5:15.04:0,15,167 0/0:25,0:25:63.13:0,63,714 0/0:12,0:12:36.11:0,36,452 0/0:11,0:11:33.10:0,33,395 0/0:11,0:11:24.07:0,24,294 0/0:9,0:9:18.05:0,18,218 0/0:22,0:22:57.18:0,57,715 0/0:11,0:11:30.09:0,30,377 0/0:15,0:15:42.13:0,42,521 0/0:35,0:35:93.30:0,93,1204 0/0:19,0:19:48.14:0,48,617 0/0:27,0:27:69.19:0,69,885 0/0:25,0:25:60.19:0,60,767 0/0:5,0:5:12.04:0,12,146 0/0:9,0:9:27.08:0,27,321 0/0:12,0:12:27.06:0,27,333 0/1:6,5:11:99:115,0,125 0/0:11,0:11:27.08:0,27,337 0/0:23,1:24:54.17:0,54,696 0/1:5,11:16:99:277,0,113 0/0:10,0:10:27.08:0,27,322 0/0:14,0:14:27.09:0,27,344 0/0:10,0:10:27.08:0,27,319 0/0:10,0:10:21.06:0,21,256 0/0:7,0:7:18.05:0,18,209 0/0:8,0:8:18.06:0,18,225 0/0:8,0:8:15.04:0,15,180 0/0:3,0:3:9.02:0,9,96 0/0:11,0:11:33.09:0,33,380 17 1359363 . T G 12124.84 . AC=64;AF=0.762;AN=84;BaseQRankSum=5.375;DP=596;Dels=0.00;FS=5.845;HRun=0;HaplotypeScore=0.5753;InbreedingCoeff=0.1373;MQ=57.33;MQ0=0;MQRankSum=-0.726;QD=22.45;ReadPosRankSum=-2.679 GT:AD:DP:GQ:PL 1/1:0,6:6:15.04:180,15,0 0/1:4,4:9:92.03:103,0,92 0/1:2,0:3:1.76:0,3,37 0/1:11,16:28:99:487,0,240 0/1:11,19:33:99:502,0,232 0/0:24,0:25:57.16:0,57,673 0/0:21,0:21:48.10:0,48,550 0/1:17,9:27:99:212,0,429 1/1:0,13:13:33.06:385,33,0 1/1:0,11:11:27.08:322,27,0 1/1:0,7:7:15:144,15,0 1/1:0,12:12:24.07:296,24,0 1/1:0,4:4:12.03:137,12,0 1/1:0,8:8:21.04:253,21,0 1/1:0,27:27:69.18:820,69,0 1/1:0,16:16:36.11:453,36,0 0/1:9,5:14:99:136,0,188 1/1:0,12:12:33.10:411,33,0 1/1:0,12:12:30.03:337,30,0 0/1:12,7:19:99:135,0,327 0/1:5,5:11:55.87:121,0,56 1/1:0,14:14:36.10:438,36,0 1/1:0,31:31:87.23:1081,87,0 1/1:0,12:12:30.09:391,30,0 1/1:0,25:25:63.20:833,63,0 1/1:0,18:19:48.14:573,48,0 1/1:0,5:5:15.05:186,15,0 1/1:0,11:11:27.08:327,27,0 1/1:1,15:16:30.08:335,30,0 1/1:0,15:15:36.10:425,36,0 1/1:0,10:10:21.06:244,21,0 0/1:14,9:23:99:207,0,381 1/1:0,11:11:30.08:348,30,0 0/0:9,0:10:27.08:0,27,317 0/1:7,9:17:99:225,0,141 0/1:4,5:9:23.55:117,0,24 1/1:0,6:6:15.04:175,15,0 1/1:0,9:9:21.06:255,21,0 0/1:6,4:10:19.74:20,0,160 1/1:0,9:9:27.08:330,27,0 0/1:2,4:6:49.83:97,0,50 0/1:6,3:10:88.50:89,0,150 17 1370542 . C A 1177.05 . AC=7;AF=0.083;AN=84;BaseQRankSum=-7.664;DP=625;Dels=0.00;FS=0.603;HRun=1;HaplotypeScore=0.6468;InbreedingCoeff=-0.0916;MQ=58.81;MQ0=0;MQRankSum=1.306;QD=12.93;ReadPosRankSum=-2.322 GT:AD:DP:GQ:PL 0/1:7,6:13:99:147,0,234 0/1:5,5:10:99:154,0,160 0/0:20,0:20:51.14:0,51,648 0/0:32,0:32:81.26:0,81,1087 0/0:22,0:22:60.20:0,60,803 0/0:11,0:11:33.08:0,33,407 0/0:15,0:15:36.12:0,36,486 0/0:16,0:16:42.14:0,42,556 0/0:11,0:11:30.09:0,30,381 0/0:7,0:7:21.07:0,21,266 0/0:14,0:14:42.14:0,42,541 0/0:9,0:9:24.08:0,24,304 0/0:11,0:11:27.09:0,27,348 0/0:10,0:10:27.09:0,27,339 0/0:49,0:49:99:0,132,1648 0/0:11,0:11:33.11:0,33,422 0/0:11,0:11:27.09:0,27,354 0/1:3,5:8:94.66:133,0,95 0/1:7,6:13:99:181,0,208 0/0:21,0:21:60.19:0,60,779 0/0:12,0:12:33.11:0,33,427 0/0:13,0:13:36.12:0,36,468 0/0:26,0:26:69.21:0,69,919 0/0:7,0:7:21.07:0,21,286 0/0:25,0:25:63.18:0,63,815 0/0:11,0:11:30.10:0,30,404 0/0:10,0:10:27.09:0,27,348 0/0:10,0:10:30.10:0,30,381 0/0:12,0:12:36.11:0,36,450 0/0:10,0:10:27.08:0,27,337 0/0:19,0:19:54.16:0,54,682 0/0:20,0:20:54.16:0,54,668 0/0:17,0:17:48.15:0,48,600 0/0:16,0:16:48.15:0,48,597 0/0:11,0:11:33.10:0,33,399 0/0:11,0:11:30.09:0,30,376 0/1:8,7:15:99:145,0,259 0/1:8,12:20:99:327,0,204 0/1:5,7:12:99:205,0,154 0/0:13,0:13:33.10:0,33,412 0/0:14,0:14:39.12:0,39,485 0/0:7,0:7:18.06:0,18,234 17 1384066 . A G 92258.82 . AC=84;AF=1.000;AN=84;BaseQRankSum=2.119;DP=3023;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.5834;InbreedingCoeff=-0.0000;MQ=58.91;MQ0=0;MQRankSum=0.608;QD=30.52;ReadPosRankSum=2.184 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1502,132,0 1/1:0,59:59:99:1894,171,0 1/1:0,48:48:99:1433,126,0 1/1:0,157:157:99:5001,427,0 1/1:0,154:154:99:5183,427,0 1/1:1,87:88:99:2750,210,0 1/1:0,87:87:99:2781,235,0 1/1:0,103:103:99:3282,277,0 1/1:0,47:47:99:1350,123,0 1/1:0,37:37:99:1096,102,0 1/1:0,38:38:99:1108,102,0 1/1:0,54:54:99:1648,144,0 1/1:0,45:45:99:1304,117,0 1/1:0,43:44:99:1289,117,0 1/1:0,180:185:99:5158,457,0 1/1:0,66:67:99:1908,174,0 1/1:0,37:37:99:1150,102,0 1/1:0,61:61:99:1927,168,0 1/1:0,94:96:99:2553,232,0 1/1:0,107:108:99:3337,292,0 1/1:0,94:95:99:2730,244,0 1/1:0,57:57:99:1737,153,0 1/1:0,156:156:99:5335,436,0 1/1:0,85:85:99:2694,232,0 1/1:0,96:97:99:3037,256,0 1/1:0,85:86:99:2883,244,0 1/1:0,43:43:99:1214,111,0 1/1:0,48:48:99:1527,138,0 1/1:0,45:45:99:1346,120,0 1/1:0,49:49:99:1635,147,0 1/1:0,60:61:99:1814,159,0 1/1:0,91:92:99:2570,226,0 1/1:1,78:79:99:2310,207,0 1/1:0,48:48:99:1534,135,0 1/1:0,50:50:99:1494,132,0 1/1:0,46:46:99:1423,123,0 1/1:0,70:70:99:1807,156,0 1/1:0,56:57:99:1628,144,0 1/1:0,47:47:99:1440,129,0 1/1:0,53:53:99:1549,135,0 1/1:0,48:48:99:1503,132,0 1/1:0,47:48:99:1394,126,0 17 1386153 . A C 266.51 . AC=16;AF=0.190;AN=84;BaseQRankSum=-2.540;DP=861;Dels=0.00;FS=8.555;HRun=2;HaplotypeScore=0.7662;InbreedingCoeff=-0.2607;MQ=54.55;MQ0=1;MQRankSum=-6.705;QD=0.93;ReadPosRankSum=-9.797 GT:AD:DP:GQ:PL 0/0:13,2:15:7.57:0,8,416 0/0:11,1:12:5.43:0,5,346 0/1:8,1:9:9.36:9,0,225 0/1:45,7:53:37.73:38,0,1355 0/0:33,4:37:42.23:0,42,1115 0/0:22,1:23:35.77:0,36,767 0/1:21,2:23:9.01:9,0,660 0/0:25,2:27:36.99:0,37,865 0/0:11,0:11:24.05:0,24,279 0/0:7,0:7:21.06:0,21,244 0/1:7,1:8:9.37:9,0,216 0/1:13,2:15:24.77:25,0,372 0/0:13,1:14:33.09:0,33,390 0/1:9,2:11:29.03:29,0,270 0/0:69,6:75:62.01:0,62,2229 0/0:16,1:17:48.13:0,48,565 0/0:14,1:15:42.13:0,42,508 0/0:12,1:13:5.68:0,6,391 0/0:31,1:32:48.67:0,49,967 0/0:25,1:26:69.20:0,69,820 0/0:30,3:33:8.47:0,8,914 0/1:14,3:17:43.39:43,0,443 0/0:42,2:44:65.49:0,65,1418 0/0:9,1:10:27.08:0,27,336 0/0:26,0:26:75.23:0,75,922 0/1:24,4:28:29.11:29,0,789 0/0:10,2:12:24.08:0,24,315 0/1:12,3:15:26.26:26,0,386 0/1:11,2:13:27.75:28,0,358 0/1:18,4:22:43.13:43,0,527 0/1:6,1:7:11.57:12,0,168 0/0:28,5:33:23.94:0,24,821 0/1:14,4:18:14.92:15,0,451 0/0:10,0:10:30.08:0,30,340 0/1:12,4:16:67.18:67,0,394 0/0:10,0:10:27.07:0,27,323 0/0:31,5:36:27.17:0,27,953 0/1:17,3:20:21.73:22,0,441 0/0:15,0:15:42.12:0,42,506 0/0:11,1:12:2.84:0,0,333 0/1:8,2:10:13.72:14,0,239 0/0:9,1:10:2.30:2,0,269 17 1386314 . C T 577.68 . 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T C 268.18 . 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C T 760.07 . 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C T 3545.26 . 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G T 1006.09 . AC=24;AF=0.286;AN=84;BaseQRankSum=-11.796;DP=2129;Dels=0.00;FS=1221.331;HRun=1;HaplotypeScore=1.4462;InbreedingCoeff=-0.4068;MQ=58.34;MQ0=0;MQRankSum=-0.290;QD=0.92;ReadPosRankSum=-15.132 GT:AD:DP:GQ:PL 0/1:29,21:50:43.61:44,0,670 0/0:29,10:39:55.33:0,55,864 0/1:32,19:51:24.10:24,0,852 0/1:52,18:70:42.35:42,0,1369 0/0:51,30:81:4.35:0,4,1437 0/1:38,13:51:22.16:22,0,1070 0/0:36,14:50:64.19:0,64,1190 0/1:42,19:61:20.37:20,0,1213 0/0:36,10:46:67.62:0,68,1178 0/1:24,18:42:43.84:44,0,601 0/0:27,17:44:9.50:0,10,766 0/1:24,5:29:43.67:44,0,564 0/0:29,6:35:78.21:0,78,928 0/1:22,8:30:3.41:3,0,669 0/0:93,50:143:35.41:0,35,2413 0/0:27,10:37:2.77:0,3,608 0/1:27,15:42:43.52:44,0,697 0/1:26,13:39:46.61:47,0,612 0/1:41,14:55:99:107,0,1018 0/0:57,15:73:45.27:0,45,1583 0/1:44,23:67:62.80:63,0,1032 0/0:25,14:39:29.74:0,30,700 0/0:76,39:115:19.75:0,20,2120 0/0:35,6:41:69.18:0,69,847 0/1:38,15:53:9.87:10,0,1074 0/1:18,16:34:46.46:46,0,462 0/1:30,10:40:13.74:14,0,826 0/1:24,13:37:67.87:68,0,651 0/1:24,11:35:26.82:27,0,660 0/1:28,17:45:47.57:48,0,725 0/1:31,19:50:99:136,0,749 0/0:47,24:71:43:0,43,1420 0/0:51,22:74:39.40:0,39,1445 0/1:33,16:49:69.93:70,0,694 0/1:28,17:45:25.94:26,0,713 0/1:26,17:43:99:135,0,574 0/0:30,14:44:39.63:0,40,775 0/0:26,11:37:57.18:0,57,719 0/0:24,8:32:54.16:0,54,658 0/1:30,14:44:78.32:78,0,859 0/0:27,12:39:13.08:0,13,722 0/1:20,7:27:18.37:18,0,464 17 1416795 . C T 2689.13 . 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C T 79.22 . 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T C 1481.83 . 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C T 5541.58 . 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C T 66132.54 . 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A G 39927.63 . 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G A 1809.80 . 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C T 2448.08 . 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C T 3199.22 . 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G A 1999.94 . 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G C 1439.33 . 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C T 74507.18 . 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C G 3063.79 . 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C G 1235.01 . 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G A 692.79 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.637;DP=2461;Dels=0.00;FS=6.106;HRun=1;HaplotypeScore=1.2770;InbreedingCoeff=-0.0120;MQ=58.54;MQ0=0;MQRankSum=0.984;QD=10.82;ReadPosRankSum=-0.123 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,117,1408 0/0:51,0:51:99:0,138,1624 0/0:36,0:36:99:0,102,1195 0/0:91,0:91:99:0,244,3111 0/1:38,26:64:99:739,0,1138 0/0:59,0:59:99:0,153,2041 0/0:66,0:66:99:0,181,2306 0/0:57,0:57:99:0,163,2061 0/0:52,0:52:99:0,144,1737 0/0:46,0:46:99:0,129,1516 0/0:47,0:47:99:0,135,1595 0/0:45,0:45:99:0,123,1449 0/0:46,0:47:99:0,132,1541 0/0:42,0:42:99:0,120,1418 0/0:165,0:166:99:0,472,5487 0/0:40,1:41:93.63:0,94,1294 0/0:49,0:49:99:0,132,1581 0/0:42,0:42:99:0,114,1330 0/0:78,0:78:99:0,217,2502 0/0:103,0:104:99:0,286,3409 0/0:97,0:97:99:0,268,3175 0/0:63,0:63:99:0,172,2058 0/0:85,0:85:99:0,241,3128 0/0:47,0:47:99:0,126,1632 0/0:49,0:49:99:0,138,1759 0/0:51,0:51:99:0,138,1768 0/0:37,0:37:99:0,99,1171 0/0:40,1:41:74.32:0,74,1211 0/0:39,0:39:99:0,114,1333 0/0:50,0:50:99:0,144,1647 0/0:46,0:47:99:0,129,1566 0/0:70,0:70:99:0,196,2293 0/0:59,0:59:99:0,159,1872 0/0:48,0:48:99:0,144,1634 0/0:53,0:53:99:0,150,1801 0/0:57,0:57:99:0,162,1928 0/0:67,0:67:99:0,190,2184 0/0:59,0:59:99:0,162,1896 0/0:58,0:58:99:0,168,1970 0/0:63,0:63:99:0,184,2138 0/0:42,0:42:99:0,111,1354 0/0:54,0:54:99:0,159,1809 17 2233918 . A C 1682.57 . AC=31;AF=0.369;AN=84;BaseQRankSum=-19.478;DP=1719;Dels=0.00;FS=535.096;HRun=2;HaplotypeScore=0.7706;InbreedingCoeff=-0.5842;MQ=58.25;MQ0=0;MQRankSum=-1.074;QD=1.36;ReadPosRankSum=-9.575 GT:AD:DP:GQ:PL 0/1:11,14:25:13.17:13,0,344 0/1:12,18:30:16.11:16,0,395 0/1:8,19:27:99:141,0,195 0/1:18,37:55:26.34:26,0,547 0/1:10,35:45:36.97:37,0,293 0/1:13,24:37:8.27:8,0,389 0/0:20,33:53:23.85:0,24,594 0/1:14,26:40:34.78:35,0,445 0/1:13,24:37:74.72:75,0,361 0/1:16,20:36:36.16:36,0,460 0/1:10,5:15:60.51:61,0,249 0/1:12,20:32:99:108,0,329 0/0:15,20:35:45.14:0,45,538 0/0:18,16:34:54.14:0,54,629 0/1:52,76:128:16.73:17,0,1500 0/1:14,17:31:55.58:56,0,407 0/0:17,14:31:21.47:0,21,527 0/1:12,10:22:24.93:25,0,327 0/1:34,29:63:74.61:75,0,935 0/0:46,35:81:41.07:0,41,1368 0/0:25,33:58:19.17:0,19,752 0/0:25,21:47:46.06:0,46,706 0/1:15,35:50:99:145,0,397 0/0:13,22:35:6.61:0,7,398 0/1:9,21:30:50.68:51,0,293 0/1:14,23:37:57.25:57,0,452 0/0:15,15:30:16.69:0,17,442 0/1:12,25:37:99:119,0,376 0/1:12,17:29:71.29:71,0,391 0/0:15,22:37:36.24:0,36,451 0/1:6,14:20:32.19:32,0,176 0/1:31,36:67:19.01:19,0,826 0/0:19,26:45:23.53:0,24,505 0/1:8,26:34:99:123,0,182 0/1:15,21:36:55.47:55,0,419 0/1:14,22:36:65.42:65,0,387 0/1:23,27:50:28:28,0,604 0/1:11,28:39:63.24:63,0,279 0/1:18,26:44:41.39:41,0,579 0/1:17,31:48:94.69:95,0,484 0/1:9,12:21:19.18:19,0,287 0/1:17,15:32:99:149,0,538 17 2236931 . G A 1023.99 . AC=1;AF=0.012;AN=84;BaseQRankSum=-7.246;DP=4272;DS;Dels=0.00;FS=1.279;HRun=1;HaplotypeScore=1.5494;InbreedingCoeff=-0.0120;MQ=59.56;MQ0=0;MQRankSum=-1.026;QD=14.42;ReadPosRankSum=-1.883 GT:AD:DP:GQ:PL 0/0:87,0:87:99:0,238,3002 0/0:71,0:71:99:0,205,2553 0/0:79,0:79:99:0,208,2642 0/0:186,1:187:99:0,506,6736 0/0:166,0:166:99:0,439,5989 0/0:167,0:167:99:0,469,6292 0/0:132,0:132:99:0,358,4837 0/0:133,0:133:99:0,376,5054 0/0:90,0:90:99:0,244,3113 0/0:66,0:66:99:0,187,2354 0/0:85,0:85:99:0,229,2934 0/0:88,1:89:99:0,256,3231 0/0:70,0:70:99:0,190,2398 0/0:85,0:85:99:0,238,3042 0/0:239,0:239:99:0,644,8220 0/0:67,0:67:99:0,196,2463 0/0:65,0:65:99:0,187,2319 0/0:72,0:72:99:0,205,2555 0/0:131,0:131:99:0,355,4435 0/0:141,0:142:99:0,373,4769 0/0:121,1:122:99:0,300,3978 0/0:59,0:59:99:0,163,2055 0/0:219,0:219:99:0,587,7924 0/0:140,0:140:99:0,379,5132 0/0:136,0:136:99:0,358,4866 0/0:116,0:117:99:0,301,4072 0/0:61,0:61:99:0,178,2243 0/0:66,0:66:99:0,190,2384 0/0:53,0:53:99:0,147,1839 0/0:83,1:84:99:0,205,2831 0/0:77,0:77:99:0,226,2880 0/0:107,0:107:99:0,292,3677 0/0:80,0:80:99:0,217,2767 0/0:79,0:79:99:0,214,2726 0/0:78,0:78:99:0,223,2842 0/0:83,0:83:99:0,238,3019 0/0:105,0:106:99:0,289,3573 0/0:78,0:78:99:0,220,2758 0/1:33,38:71:99:1070,0,1024 0/0:87,0:87:99:0,253,3130 0/0:66,0:66:99:0,187,2380 0/0:78,0:78:99:0,217,2782 17 2266799 . G A 11512.22 . AC=43;AF=0.512;AN=84;BaseQRankSum=-3.768;DP=803;Dels=0.00;FS=0.828;HRun=1;HaplotypeScore=0.5168;InbreedingCoeff=-0.0073;MQ=58.00;MQ0=0;MQRankSum=-0.299;QD=20.30;ReadPosRankSum=3.288 GT:AD:DP:GQ:PL 0/1:6,7:13:99:225,0,159 0/1:6,13:19:99:412,0,160 1/1:0,18:18:45.11:538,45,0 0/0:31,0:31:84.24:0,84,1042 0/0:46,0:46:99:0,126,1556 0/0:20,0:20:54.15:0,54,679 0/1:7,9:16:99:291,0,161 0/0:23,0:23:66.18:0,66,805 0/1:4,8:12:85.63:237,0,86 0/1:5,8:13:99:258,0,149 0/1:10,7:17:99:187,0,267 1/1:0,19:19:45.14:575,45,0 1/1:0,15:15:45.14:544,45,0 0/1:8,6:14:99:135,0,257 0/0:37,0:37:93.28:0,93,1138 0/0:12,0:13:36.11:0,36,434 0/1:8,2:10:43.83:44,0,260 1/1:0,19:19:57.17:683,57,0 0/1:7,11:18:99:314,0,202 0/1:20,15:35:99:446,0,543 0/1:15,11:26:99:298,0,378 0/1:12,11:23:99:273,0,353 0/1:17,24:41:99:706,0,492 1/1:0,14:14:42.12:501,42,0 1/1:0,14:14:33.11:430,33,0 1/1:0,19:19:51.16:655,51,0 0/1:7,7:14:99:199,0,151 0/1:7,12:19:99:369,0,192 0/0:13,0:13:39.11:0,39,477 1/1:0,14:14:39.10:449,39,0 1/1:0,13:13:36.10:422,36,0 0/1:20,12:32:99:350,0,601 1/1:0,14:14:39.12:482,39,0 0/1:7,9:16:99:291,0,178 0/1:8,6:14:99:163,0,213 0/0:18,0:18:51.16:0,51,623 0/0:21,1:23:54.14:0,54,636 0/1:9,8:17:99:237,0,245 0/1:7,5:12:99:122,0,214 0/1:5,8:13:99:238,0,150 1/1:1,13:14:7.78:440,8,0 0/0:12,0:12:33.10:0,33,408 17 2266812 . T C 8756.47 . AC=43;AF=0.512;AN=84;BaseQRankSum=-5.644;DP=696;Dels=0.00;FS=19.200;HRun=0;HaplotypeScore=0.7013;InbreedingCoeff=-0.0113;MQ=58.05;MQ0=0;MQRankSum=0.498;QD=17.98;ReadPosRankSum=-1.658 GT:AD:DP:GQ:PL 0/1:7,7:14:99:186,0,152 0/1:3,11:14:56.06:300,0,56 1/1:0,12:12:30.08:342,30,0 0/0:23,0:24:63.19:0,63,741 0/0:36,0:36:90.24:0,90,1026 0/0:25,1:26:69.18:0,69,804 0/1:10,12:22:99:339,0,222 0/0:21,0:21:54.10:0,54,595 0/1:7,6:13:99:141,0,208 0/1:6,8:14:99:226,0,139 0/1:8,4:12:97.52:98,0,217 1/1:0,9:9:27.07:305,27,0 1/1:0,10:10:30.06:325,30,0 0/1:9,5:14:99:128,0,216 0/0:31,0:32:75.20:0,75,861 0/0:13,0:13:36.11:0,36,437 0/1:6,4:10:99:118,0,156 1/1:0,13:13:39.09:407,39,0 0/1:6,8:14:99:150,0,173 0/1:14,14:28:99:298,0,419 0/1:11,11:22:99:283,0,225 0/1:7,10:17:99:249,0,185 0/1:14,19:33:99:483,0,386 1/1:0,15:15:39.12:462,39,0 1/1:0,14:14:39.09:463,39,0 1/1:0,18:18:45.12:541,45,0 0/1:5,7:12:99:193,0,143 0/1:4,8:12:78.20:204,0,78 0/0:17,0:17:36.10:0,36,417 1/1:0,12:12:33.07:341,33,0 1/1:0,15:15:33.05:340,33,0 0/1:16,11:28:99:236,0,446 1/1:0,14:14:36.07:399,36,0 0/1:5,9:14:90.70:263,0,91 0/1:6,7:13:99:146,0,102 0/0:14,0:14:36.11:0,36,423 0/0:17,0:17:45.13:0,45,532 0/1:5,3:8:67.58:68,0,150 0/1:9,8:17:99:221,0,198 0/1:5,7:12:99:172,0,127 1/1:1,11:12:5.50:330,5,0 0/0:9,0:9:24.07:0,24,283 17 2268311 . G A 18715.27 . AC=43;AF=0.512;AN=84;BaseQRankSum=3.325;DP=1504;Dels=0.00;FS=13.272;HRun=0;HaplotypeScore=0.9410;InbreedingCoeff=-0.0006;MQ=59.03;MQ0=0;MQRankSum=0.503;QD=18.57;ReadPosRankSum=-1.684 GT:AD:DP:GQ:PL 0/1:11,13:24:99:406,0,268 0/1:10,6:16:99:166,0,291 1/1:0,14:14:39.05:427,39,0 0/0:85,2:87:99:0,178,2712 0/0:97,0:97:99:0,256,3243 0/0:44,0:44:99:0,111,1404 0/1:30,19:49:99:537,0,730 0/0:54,0:54:99:0,141,1782 0/1:10,10:20:99:305,0,255 0/1:13,7:20:99:139,0,399 0/1:4,7:11:72.47:220,0,72 1/1:0,28:28:72.22:892,72,0 1/1:0,22:22:51.15:633,51,0 0/1:16,14:30:99:344,0,447 0/0:84,0:84:99:0,220,2645 0/0:25,0:25:60.15:0,60,687 0/1:14,5:19:99:131,0,379 1/1:0,22:22:60.19:739,60,0 0/1:21,21:42:99:594,0,527 0/1:27,30:57:99:840,0,651 0/1:39,26:65:99:695,0,901 0/1:25,13:38:99:346,0,667 0/1:39,58:98:99:1663,0,967 1/1:0,34:34:84.26:1073,84,0 1/1:0,52:52:99:1680,132,0 1/1:0,34:34:81.24:1006,81,0 0/1:9,8:17:99:222,0,222 0/1:14,9:23:99:272,0,371 0/0:17,0:17:48.12:0,48,555 1/1:0,26:26:69.19:843,69,0 1/1:0,14:14:39.12:486,39,0 0/1:38,24:62:99:551,0,1034 1/1:0,37:37:99:1227,99,0 0/1:10,8:18:99:223,0,252 0/1:8,8:16:99:225,0,230 0/0:26,0:26:72.19:0,72,820 0/0:45,0:46:99:0,111,1312 0/1:14,20:34:99:540,0,396 0/1:8,20:28:99:554,0,187 0/1:13,7:20:99:164,0,311 1/1:0,18:18:45.14:572,45,0 0/0:16,0:16:45.10:0,45,519 17 2268553 . C T 571.69 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.017;DP=932;Dels=0.00;FS=1.077;HRun=0;HaplotypeScore=0.5702;InbreedingCoeff=-0.0245;MQ=59.03;MQ0=0;MQRankSum=1.323;QD=15.45;ReadPosRankSum=-0.109 GT:AD:DP:GQ:PL 0/0:19,0:19:51.14:0,51,580 0/0:18,0:18:54.14:0,54,583 0/0:17,0:17:51.13:0,51,566 0/0:37,0:37:99:0,102,1192 0/0:38,0:38:99:0,111,1300 0/1:6,10:16:99:341,0,121 0/0:21,0:21:57.13:0,57,647 0/1:11,10:21:99:293,0,316 0/0:16,0:16:48.11:0,48,513 0/0:15,0:15:45.11:0,45,485 0/0:22,0:22:63.17:0,63,717 0/0:21,0:21:60.16:0,60,680 0/0:15,0:15:42.08:0,42,452 0/0:13,0:13:39.11:0,39,442 0/0:75,0:76:99:0,195,2182 0/0:10,0:10:24.03:0,24,247 0/0:25,0:25:72.19:0,72,802 0/0:18,0:18:54.14:0,54,596 0/0:32,0:32:90.22:0,90,980 0/0:38,0:38:96.23:0,96,1089 0/0:34,0:34:87.23:0,87,986 0/0:22,0:22:63.12:0,63,681 0/0:42,0:42:99:0,120,1408 0/0:10,0:10:27.08:0,27,331 0/0:15,0:15:45.13:0,45,524 0/0:13,0:13:36.11:0,36,435 0/0:22,0:22:57.16:0,57,672 0/0:19,0:19:51.14:0,51,576 0/0:14,0:14:39.08:0,39,420 0/0:20,0:20:57.14:0,57,637 0/0:14,0:14:42.10:0,42,465 0/0:29,0:29:75.20:0,75,869 0/0:19,0:19:54.14:0,54,596 0/0:16,0:16:42.11:0,42,480 0/0:25,0:25:63.17:0,63,728 0/0:23,0:24:63.17:0,63,711 0/0:16,0:16:39.10:0,39,432 0/0:17,0:17:48.13:0,48,552 0/0:25,0:25:75.13:0,75,792 0/0:13,0:13:39.05:0,39,398 0/0:14,0:14:39.09:0,39,429 0/0:21,0:21:60.15:0,60,646 17 2275544 . C T 1835.92 . 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T C 25427.26 . 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C A 23234.80 . AC=30;AF=0.357;AN=84;BaseQRankSum=-0.419;DP=2531;Dels=0.00;FS=13.783;HRun=3;HaplotypeScore=1.8037;InbreedingCoeff=-0.0370;MQ=58.73;MQ0=0;MQRankSum=0.762;QD=17.63;ReadPosRankSum=-0.251 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1227,99,0 0/1:27,19:46:99:551,0,729 0/1:30,21:51:99:555,0,838 0/1:50,51:101:99:1480,0,1397 0/1:38,25:63:99:716,0,1140 0/0:66,0:66:99:0,172,2264 0/1:31,22:53:99:520,0,1010 0/1:21,27:48:99:846,0,627 0/1:16,26:42:99:812,0,408 0/0:39,0:39:99:0,114,1369 1/1:0,38:38:99:1311,105,0 0/0:58,0:58:99:0,156,1966 0/0:36,1:37:99:0,102,1254 0/1:21,21:42:99:614,0,545 0/0:178,1:179:99:0,463,5733 0/1:18,14:32:99:392,0,517 0/1:31,21:52:99:592,0,832 1/1:0,42:42:99:1422,117,0 0/1:53,53:106:99:1524,0,1322 0/0:137,0:137:99:0,361,4511 0/0:94,0:94:99:0,229,2832 0/1:31,47:78:99:1329,0,799 1/1:0,85:85:99:2859,226,0 0/1:13,24:37:99:680,0,380 0/0:68,0:68:99:0,178,2341 0/1:30,16:47:99:417,0,804 0/1:18,17:35:99:496,0,478 0/0:55,0:55:99:0,159,1894 0/1:20,19:39:99:482,0,500 0/1:27,17:44:99:467,0,816 0/0:30,0:30:84.25:0,84,1022 0/0:93,0:93:99:0,250,3077 1/1:0,64:64:99:2198,181,0 0/1:20,13:33:99:388,0,534 0/1:26,22:48:99:656,0,658 0/1:28,26:54:99:701,0,807 0/0:114,1:115:99:0,301,3622 0/0:32,0:32:87.26:0,87,1080 0/0:43,1:44:99:0,114,1401 0/0:51,0:51:99:0,141,1709 0/0:53,0:53:99:0,144,1788 0/0:62,0:62:99:0,166,2084 17 2923771 . C G 12.82 . 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G A 18943.94 . AC=33;AF=0.393;AN=84;BaseQRankSum=6.546;DP=1991;Dels=0.00;FS=14.509;HRun=0;HaplotypeScore=1.0403;InbreedingCoeff=-0.1483;MQ=59.13;MQ0=0;MQRankSum=0.360;QD=16.62;ReadPosRankSum=0.042 GT:AD:DP:GQ:PL 0/0:33,2:35:20.69:0,21,1024 0/0:38,0:38:96.28:0,96,1160 0/1:19,19:38:99:561,0,552 0/1:23,20:43:99:606,0,629 0/0:54,0:54:99:0,144,1914 0/1:16,10:26:99:278,0,469 0/1:17,10:27:99:252,0,502 0/1:15,7:22:99:171,0,412 1/1:0,41:41:99:1382,108,0 1/1:0,37:37:93.30:1198,93,0 0/1:27,18:45:99:458,0,765 0/1:11,15:26:99:463,0,335 0/1:22,21:43:99:591,0,640 0/1:24,13:37:99:346,0,696 0/0:202,0:204:99:0,478,5944 0/1:19,22:41:99:709,0,464 0/0:37,0:37:99:0,99,1207 0/1:23,21:44:99:548,0,642 0/1:47,41:88:99:1155,0,1281 0/1:52,42:94:99:1167,0,1414 0/0:79,0:80:99:0,211,2555 0/0:50,0:50:99:0,135,1634 1/1:0,39:39:99:1312,102,0 0/1:17,20:37:99:654,0,494 0/1:7,15:22:99:397,0,224 0/0:24,0:24:57.16:0,57,771 1/1:0,29:29:78.25:999,78,0 0/1:18,16:34:99:491,0,492 1/1:0,35:35:90.29:1156,90,0 0/1:20,16:36:99:489,0,589 0/1:20,18:38:99:571,0,584 0/1:29,38:67:99:1013,0,807 0/0:52,0:52:99:0,129,1626 0/1:26,20:46:99:619,0,704 0/1:16,11:28:99:338,0,482 0/0:50,0:50:99:0,132,1621 0/0:81,0:81:99:0,217,2584 0/1:20,26:46:99:662,0,510 0/0:46,0:46:99:0,129,1537 0/0:47,0:47:99:0,129,1576 0/0:52,1:53:98.42:0,98,1579 0/1:17,14:31:99:359,0,471 17 3417253 . A G 1890.78 . 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T G 38970.47 . 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C T 1707.38 . 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C T 242.96 . 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A G 116.41 . 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TG T 25606.13 . 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GT G 1616.93 . 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A T 290.85 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.459;DP=2067;Dels=0.00;FS=2.363;HRun=0;HaplotypeScore=2.5026;InbreedingCoeff=-0.0120;MQ=58.53;MQ0=0;MQRankSum=0.807;QD=7.46;ReadPosRankSum=-1.473 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,99,1226 0/0:30,0:30:81.24:0,81,981 0/0:45,0:45:99:0,114,1417 0/0:125,0:125:99:0,331,4015 0/0:106,0:106:99:0,292,3515 0/0:84,0:84:99:0,223,2699 0/0:66,0:66:99:0,184,2249 0/0:68,0:68:99:0,175,2185 0/0:40,0:40:99:0,99,1205 0/0:34,0:34:81.25:0,81,1028 0/0:36,0:36:93.26:0,93,1125 0/0:29,0:29:78.21:0,78,927 0/0:26,0:26:69.21:0,69,849 0/0:36,0:36:99:0,105,1285 0/0:114,0:115:99:0,298,3562 0/0:33,0:33:90.27:0,90,1097 0/0:30,0:30:84.23:0,84,1000 0/1:24,15:39:99:337,0,690 0/0:61,0:61:99:0,162,1952 0/0:70,0:70:99:0,172,2138 0/0:42,0:42:99:0,108,1334 0/0:36,0:36:99:0,102,1194 0/0:111,0:113:99:0,304,3682 0/0:52,0:52:99:0,144,1750 0/0:64,0:64:99:0,171,2129 0/0:51,0:51:99:0,153,1852 0/0:17,0:17:45.14:0,45,553 0/0:34,0:34:84.27:0,84,1071 0/0:25,0:26:69.19:0,69,820 0/0:44,0:44:99:0,111,1386 0/0:36,0:36:90.28:0,90,1121 0/0:74,0:74:99:0,165,2105 0/0:36,0:36:99:0,99,1207 0/0:40,0:40:99:0,108,1246 0/0:35,0:35:90.28:0,90,1102 0/0:33,0:33:93.28:0,93,1130 0/0:50,0:50:99:0,120,1489 0/0:39,0:39:99:0,102,1249 0/0:34,0:34:93.28:0,93,1137 0/0:33,0:33:93.26:0,93,1089 0/0:38,0:38:99:0,105,1255 0/0:30,0:30:78.22:0,78,929 17 3775848 . T C 25655.87 . 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T C 49656.47 . 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C A 2448.27 . 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G T 1474.49 . AC=2;AF=0.024;AN=84;BaseQRankSum=-9.293;DP=1539;Dels=0.00;FS=0.483;HRun=0;HaplotypeScore=2.6762;InbreedingCoeff=-0.0244;MQ=58.71;MQ0=0;MQRankSum=1.300;QD=10.24;ReadPosRankSum=0.254 GT:AD:DP:GQ:PL 0/0:23,0:23:63.20:0,63,793 0/0:30,0:30:84.26:0,84,1056 0/0:35,0:35:93.29:0,93,1186 0/0:69,0:69:99:0,196,2580 0/0:57,0:58:99:0,159,2111 0/0:38,0:38:99:0,99,1327 0/0:34,0:34:96.31:0,96,1278 0/0:23,0:23:66.20:0,66,856 0/0:23,0:23:66.20:0,66,815 0/0:23,0:23:60.18:0,60,757 0/0:31,0:31:93.25:0,93,1131 0/0:22,0:22:66.16:0,66,778 0/0:16,0:16:36.11:0,36,453 0/0:27,0:27:75.24:0,75,958 0/1:65,48:113:99:1138,0,1910 0/1:16,15:31:99:399,0,508 0/0:43,0:43:99:0,114,1450 0/0:31,0:31:78.24:0,78,952 0/0:36,0:36:90.25:0,90,1112 0/0:55,0:55:99:0,129,1619 0/0:42,0:43:99:0,114,1462 0/0:39,0:39:99:0,111,1381 0/0:69,0:70:99:0,196,2634 0/0:32,0:32:78.24:0,78,1049 0/0:48,0:48:99:0,126,1680 0/0:28,0:28:75.25:0,75,1021 0/0:28,0:28:81.22:0,81,983 0/0:37,0:37:99:0,111,1373 0/0:23,0:23:63.19:0,63,776 0/0:23,0:24:66.19:0,66,818 0/0:27,0:27:78.24:0,78,975 0/0:45,0:45:99:0,117,1462 0/0:47,0:47:99:0,123,1549 0/0:31,0:32:87.24:0,87,1068 0/0:31,0:31:87.27:0,87,1103 0/0:25,0:25:66.20:0,66,818 0/0:32,0:32:96.29:0,96,1179 0/0:38,0:38:99:0,108,1305 0/0:33,0:33:90.28:0,90,1129 0/0:33,0:33:99:0,99,1229 0/0:29,0:29:87.24:0,87,1059 0/0:34,0:34:99:0,99,1253 17 3840883 . G A 597.50 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.053;DP=1332;Dels=0.00;FS=2.722;HRun=1;HaplotypeScore=0.6428;InbreedingCoeff=-0.0244;MQ=59.04;MQ0=0;MQRankSum=-0.178;QD=11.95;ReadPosRankSum=0.189 GT:AD:DP:GQ:PL 0/0:23,0:23:63.19:0,63,762 0/0:33,0:33:84.25:0,84,1036 0/0:27,0:27:75.22:0,75,900 0/0:59,0:59:99:0,156,1977 0/0:37,1:38:99:0,99,1252 0/0:35,0:35:93.29:0,93,1191 0/0:25,0:25:69.22:0,69,875 0/0:28,0:28:78.25:0,78,1004 0/0:31,0:31:87.19:0,87,1016 0/0:26,0:26:66.19:0,66,812 0/0:30,0:30:84.24:0,84,1002 0/0:21,0:21:60.17:0,60,702 0/0:28,0:28:81.21:0,81,918 0/0:31,0:31:84.25:0,84,1028 0/0:61,1:63:99:0,165,1925 0/0:27,0:27:78.24:0,78,951 0/0:12,0:12:33.10:0,33,401 0/0:31,0:31:93.27:0,93,1084 0/0:32,0:32:90.22:0,90,1007 0/0:52,0:53:99:0,129,1527 0/0:37,0:37:99:0,105,1246 0/0:42,0:42:99:0,108,1264 0/0:51,0:51:99:0,138,1803 0/0:22,0:22:57.18:0,57,738 0/0:33,0:33:87.25:0,87,1114 0/0:27,0:27:75.20:0,75,929 0/0:31,0:31:81.23:0,81,979 0/0:26,0:26:69.19:0,69,817 0/0:26,0:26:72.19:0,72,848 0/0:25,0:25:69.20:0,69,814 0/0:23,0:23:63.18:0,63,754 0/0:45,0:45:99:0,120,1400 0/0:46,1:47:79.52:0,80,1322 0/1:10,9:19:99:243,0,258 0/0:25,0:25:66.18:0,66,767 0/1:15,16:31:99:417,0,459 0/0:36,1:37:99:0,99,1208 0/0:32,0:32:90.26:0,90,1075 0/0:23,0:23:69.19:0,69,819 0/0:27,0:27:63.16:0,63,750 0/0:27,0:27:72.22:0,72,869 0/0:23,0:23:63.16:0,63,704 17 3840928 . A G 5453.14 . AC=16;AF=0.190;AN=84;BaseQRankSum=-2.508;DP=1010;Dels=0.00;FS=0.337;HRun=1;HaplotypeScore=0.5681;InbreedingCoeff=0.0733;MQ=59.07;MQ0=0;MQRankSum=-0.652;QD=15.99;ReadPosRankSum=-0.411 GT:AD:DP:GQ:PL 0/0:16,0:16:45.14:0,45,565 0/0:17,0:17:51.16:0,51,635 0/0:32,0:32:81.25:0,81,1028 0/0:46,0:46:99:0,135,1718 0/0:29,0:29:81.26:0,81,1048 0/1:11,7:18:99:191,0,348 0/0:15,0:15:39.12:0,39,498 0/1:13,4:17:99:115,0,332 0/0:18,0:18:51.14:0,51,630 0/0:16,0:16:48.15:0,48,590 0/0:21,0:21:63.18:0,63,753 0/1:8,8:16:99:241,0,246 0/1:15,7:22:99:123,0,443 0/1:12,10:22:99:264,0,389 0/0:59,0:59:99:0,144,1826 0/0:16,0:16:48.15:0,48,594 0/0:7,0:7:21.06:0,21,252 1/1:0,24:24:72.21:884,72,0 1/1:0,39:39:99:1237,105,0 0/1:22,22:44:99:562,0,625 0/0:36,0:36:96.31:0,96,1224 0/1:17,12:29:99:299,0,448 0/0:32,0:32:90.29:0,90,1161 0/1:10,6:16:99:190,0,238 0/0:21,0:21:57.17:0,57,709 0/1:11,11:22:99:302,0,326 0/0:14,0:14:36.11:0,36,455 0/0:18,0:18:54.17:0,54,668 0/0:23,0:23:54.17:0,54,698 0/0:22,0:22:54.17:0,54,689 0/0:20,0:21:57.18:0,57,719 0/0:34,0:34:87.28:0,87,1130 0/0:33,0:33:87.26:0,87,1083 0/0:20,0:20:54.17:0,54,671 0/0:21,0:21:57.16:0,57,678 0/0:25,0:25:69.21:0,69,846 0/1:16,18:34:99:524,0,415 0/1:12,10:22:99:269,0,341 0/1:6,10:16:99:253,0,185 0/0:22,0:22:54.17:0,54,688 0/0:19,0:19:54.17:0,54,673 0/0:16,0:16:45.14:0,45,568 17 3854578 . C A 342.90 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.121;DP=1719;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.1516;InbreedingCoeff=-0.0120;MQ=59.37;MQ0=0;MQRankSum=-0.546;QD=10.39;ReadPosRankSum=-0.304 GT:AD:DP:GQ:PL 0/0:34,0:34:90.26:0,90,1121 0/0:29,0:29:81.21:0,81,983 0/0:28,0:28:78.24:0,78,969 0/0:96,0:96:99:0,247,3313 0/0:83,0:83:99:0,208,2821 0/0:62,0:62:99:0,150,2035 0/0:34,0:35:87.29:0,87,1188 0/0:51,0:51:99:0,135,1782 0/0:29,0:29:69.22:0,69,883 0/0:30,0:30:84.24:0,84,1026 0/0:28,0:28:72.22:0,72,904 0/0:24,0:24:60.19:0,60,792 0/0:24,0:24:63.20:0,63,811 0/0:31,0:31:81.23:0,81,1007 0/0:128,2:130:99:0,328,4220 0/0:35,0:35:96.29:0,96,1201 0/0:28,0:28:66.21:0,66,867 0/0:31,0:31:87.26:0,87,1102 0/0:52,0:52:99:0,126,1620 0/0:44,0:44:99:0,105,1361 0/0:44,1:45:99:0,117,1490 0/0:39,0:39:93.27:0,93,1179 0/0:102,0:102:99:0,247,3358 0/0:32,0:32:87.28:0,87,1157 0/0:55,0:55:99:0,138,1887 0/0:51,0:51:99:0,129,1751 0/0:24,0:24:63.18:0,63,802 0/0:39,0:39:99:0,105,1337 0/0:23,0:23:60.19:0,60,760 0/0:35,1:36:96.30:0,96,1196 0/0:30,0:30:84.24:0,84,1073 0/0:51,0:51:99:0,126,1625 0/0:27,0:27:75.24:0,75,949 0/0:35,0:35:93.30:0,93,1195 0/1:18,15:33:99:389,0,492 0/0:23,0:23:60.16:0,60,750 0/0:41,0:41:99:0,102,1302 0/0:28,0:28:72.21:0,72,900 0/0:17,0:17:51.15:0,51,625 0/0:31,0:31:81.25:0,81,1029 0/0:30,0:30:78.25:0,78,1004 0/0:23,0:23:63.20:0,63,801 17 3912964 . G A 467.98 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.550;DP=1732;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.3649;InbreedingCoeff=-0.0120;MQ=59.00;MQ0=0;MQRankSum=0.051;QD=14.18;ReadPosRankSum=-1.569 GT:AD:DP:GQ:PL 0/0:31,0:31:87.24:0,87,1027 0/0:25,0:25:72.21:0,72,855 0/0:30,0:30:78.22:0,78,937 0/0:80,1:81:99:0,201,2852 0/0:70,0:70:99:0,202,2554 0/0:67,0:67:99:0,184,2340 0/0:65,0:65:99:0,181,2273 0/0:52,0:52:99:0,135,1694 0/0:33,0:33:87.24:0,87,1029 0/0:26,0:26:78.19:0,78,878 0/1:17,16:33:99:514,0,422 0/0:23,0:23:60.16:0,60,690 0/0:22,0:22:57.16:0,57,677 0/0:38,0:38:99:0,105,1211 0/0:102,0:102:99:0,265,3108 0/0:39,0:39:99:0,114,1332 0/0:30,0:30:87.23:0,87,1021 0/0:26,0:26:75.19:0,75,853 0/0:51,0:51:99:0,135,1558 0/0:65,0:65:99:0,190,2220 0/0:53,0:53:99:0,156,1806 0/0:43,0:43:99:0,117,1405 0/0:92,0:92:99:0,247,3127 0/0:39,0:39:99:0,105,1339 0/0:65,0:65:99:0,172,2252 0/0:30,0:30:84.24:0,84,1038 0/0:26,0:26:75.20:0,75,865 0/0:31,0:31:78.23:0,78,938 0/0:27,0:27:72.22:0,72,883 0/0:41,0:41:99:0,114,1337 0/0:21,0:21:60.17:0,60,709 0/0:36,0:36:99:0,108,1260 0/0:25,0:25:72.20:0,72,839 0/0:35,0:35:99:0,105,1248 0/0:29,0:29:81.24:0,81,977 0/0:32,0:32:84.24:0,84,993 0/0:59,0:59:99:0,147,1775 0/0:30,0:30:81.22:0,81,928 0/0:29,0:29:75.20:0,75,890 0/0:28,0:28:81.23:0,81,944 0/0:23,0:23:69.18:0,69,781 0/0:29,0:29:84.23:0,84,993 17 4015997 . A G 10482.27 . AC=21;AF=0.250;AN=84;BaseQRankSum=-4.911;DP=1693;Dels=0.00;FS=2.295;HRun=0;HaplotypeScore=0.9548;InbreedingCoeff=0.0476;MQ=59.39;MQ0=0;MQRankSum=-0.868;QD=16.33;ReadPosRankSum=-1.547 GT:AD:DP:GQ:PL 0/0:28,0:28:78.21:0,78,930 0/0:30,1:31:51.75:0,52,944 0/0:35,0:35:99:0,99,1185 0/0:79,0:79:99:0,214,2605 0/0:81,0:81:99:0,235,2842 1/1:0,38:38:99:1375,108,0 0/1:20,11:31:99:329,0,600 0/1:18,18:37:99:541,0,521 0/1:13,15:28:99:460,0,308 1/1:0,36:36:99:1128,99,0 0/0:32,0:32:93.27:0,93,1101 0/0:28,0:28:78.24:0,78,940 0/0:31,0:31:84.23:0,84,1019 0/0:32,0:32:93.28:0,93,1128 0/0:132,0:132:99:0,358,4344 0/0:42,0:42:99:0,105,1306 0/0:32,0:32:93.28:0,93,1125 0/0:38,1:39:99:0,111,1326 0/0:53,0:53:99:0,147,1775 0/1:20,18:38:99:453,0,583 0/1:17,24:41:99:636,0,444 0/0:23,0:23:63.17:0,63,757 0/0:59,0:59:99:0,172,2063 0/0:36,0:36:99:0,102,1240 0/1:22,27:50:99:810,0,584 0/0:50,0:50:99:0,141,1714 0/1:10,15:25:99:433,0,271 0/0:34,0:34:99:0,102,1200 0/1:17,15:32:99:338,0,502 0/0:42,0:42:99:0,117,1390 0/1:12,16:28:99:444,0,327 0/1:28,24:52:99:633,0,690 0/0:28,0:28:78.24:0,78,938 0/1:14,16:30:99:444,0,421 0/1:12,16:28:99:392,0,343 0/0:29,0:29:84.25:0,84,1008 0/1:33,21:54:99:487,0,842 0/0:39,0:39:99:0,117,1381 1/1:0,28:28:81.20:905,81,0 0/1:20,13:33:99:315,0,625 0/1:19,14:33:99:361,0,551 0/0:36,0:36:99:0,105,1263 17 4060233 . G A 1222.23 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.024;DP=1749;Dels=0.00;FS=4.313;HRun=0;HaplotypeScore=1.0296;InbreedingCoeff=-0.0244;MQ=59.00;MQ0=0;MQRankSum=-0.505;QD=14.91;ReadPosRankSum=2.369 GT:AD:DP:GQ:PL 0/1:16,23:39:99:698,0,434 0/1:22,21:43:99:587,0,552 0/0:29,0:29:87.23:0,87,975 0/0:100,0:100:99:0,283,3564 0/0:74,0:74:99:0,205,2580 0/0:56,0:56:99:0,147,1828 0/0:41,0:41:99:0,105,1320 0/0:49,0:49:99:0,138,1739 0/0:38,0:38:99:0,105,1213 0/0:34,0:34:99:0,99,1142 0/0:39,0:39:99:0,111,1265 0/0:32,0:32:93.24:0,93,1065 0/0:33,0:33:96.26:0,96,1097 0/0:31,0:31:90.23:0,90,1001 0/0:105,0:106:99:0,289,3292 0/0:30,0:30:87.19:0,87,956 0/0:30,0:30:90.25:0,90,1017 0/0:32,0:32:87.22:0,87,985 0/0:45,0:45:99:0,126,1469 0/0:58,0:58:99:0,165,1912 0/0:39,0:39:99:0,108,1267 0/0:38,0:38:99:0,105,1189 0/0:95,0:95:99:0,259,3262 0/0:35,2:37:57.54:0,58,1192 0/0:53,0:53:99:0,147,1906 0/0:44,0:44:99:0,123,1534 0/0:28,0:28:81.21:0,81,914 0/0:25,0:25:72.18:0,72,801 0/0:23,0:23:66.18:0,66,771 0/0:29,0:29:81.22:0,81,932 0/0:33,0:33:96.27:0,96,1096 0/0:44,0:44:99:0,114,1331 0/0:48,0:48:99:0,126,1445 0/0:29,0:29:84.22:0,84,932 0/0:38,0:38:99:0,108,1258 0/0:40,0:40:99:0,105,1205 0/0:44,0:44:99:0,120,1321 0/0:29,0:29:84.22:0,84,971 0/0:18,0:18:54.15:0,54,623 0/0:32,0:32:93.24:0,93,1034 0/0:20,0:20:60.16:0,60,679 0/0:22,0:23:63.18:0,63,731 17 4092754 . C T 4.01 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.829;DP=331;Dels=0.00;FS=7.447;HRun=0;HaplotypeScore=0.0911;InbreedingCoeff=-0.0344;MQ=59.22;MQ0=0;MQRankSum=0.463;QD=0.27;ReadPosRankSum=0.227 GT:AD:DP:GQ:PL 0/0:11,0:11:30.09:0,30,378 0/0:8,0:8:18.02:0,18,191 0/0:4,0:4:9.03:0,9,122 0/0:11,0:11:30.10:0,30,406 0/0:7,0:7:21.07:0,21,291 0/0:7,0:7:21.07:0,21,277 0/0:9,0:9:21.06:0,21,276 0/0:6,0:6:18.06:0,18,237 0/0:5,0:5:15.04:0,15,171 0/0:7,0:7:15.05:0,15,198 0/0:11,0:11:30.09:0,30,380 0/0:1,0:1:3.01:0,3,38 0/0:5,0:5:12.04:0,12,158 0/0:4,0:4:9.03:0,9,119 0/0:28,0:28:69.20:0,69,859 0/0:2,0:2:6.02:0,6,71 0/0:7,0:7:21.07:0,21,260 0/0:3,0:3:9.03:0,9,115 0/0:10,0:10:27.09:0,27,343 0/0:12,0:12:33.10:0,33,414 0/0:21,0:21:54.17:0,54,694 0/0:9,0:9:24.08:0,24,314 0/0:14,0:14:39.13:0,39,529 0/0:3,0:3:9.03:0,9,113 0/0:5,0:5:9.03:0,9,132 0/0:7,0:7:18.04:0,18,222 0/0:5,0:5:12.04:0,12,160 0/0:5,0:5:15.02:0,15,173 0/0:9,0:9:24.07:0,24,298 0/0:5,0:5:12.04:0,12,157 0/0:8,0:8:24.07:0,24,297 0/0:6,0:6:12.04:0,12,157 0/0:10,0:10:27.08:0,27,330 0/0:9,0:9:27.09:0,27,349 0/0:2,0:2:6.02:0,6,74 0/0:10,0:10:24.08:0,24,320 0/1:12,3:15:47.78:48,0,318 0/0:7,0:7:21.07:0,21,266 0/0:6,0:6:18.06:0,18,228 0/0:5,0:5:15.05:0,15,190 0/0:6,0:6:18.05:0,18,219 0/0:6,0:6:18.06:0,18,229 17 4356375 . G T 63084.95 . AC=35;AF=0.417;AN=84;BaseQRankSum=-41.838;DP=4986;DS;Dels=0.00;FS=20.686;HRun=1;HaplotypeScore=3.7984;InbreedingCoeff=-0.2245;MQ=59.18;MQ0=0;MQRankSum=0.454;QD=17.10;ReadPosRankSum=0.888 GT:AD:DP:GQ:PL 0/1:48,49:97:99:1273,0,1381 0/0:93,1:94:99:0,247,3091 0/0:76,0:76:99:0,217,2748 0/0:247,1:248:99:0,667,9363 0/1:116,97:213:99:2854,0,3836 0/1:71,78:149:99:2318,0,2395 0/0:142,1:143:99:0,363,5348 0/1:77,74:151:99:2107,0,2504 0/1:52,53:105:99:1462,0,1625 0/1:38,39:77:99:1047,0,1188 0/1:38,48:86:99:1385,0,1139 0/1:46,45:91:99:1287,0,1218 1/1:0,70:70:99:2245,187,0 0/0:92,0:92:99:0,256,3225 1/1:0,250:250:99:8063,671,0 0/1:41,31:72:99:891,0,1247 1/1:1,95:96:99:3119,256,0 0/1:46,22:68:99:573,0,1408 0/1:75,87:162:99:2528,0,2093 1/1:0,185:185:99:6006,493,0 0/1:85,74:160:99:1995,0,2519 0/1:46,50:96:99:1382,0,1324 0/1:122,114:237:99:3293,0,3902 0/1:69,40:110:99:1037,0,2240 0/0:147,0:147:99:0,409,5587 0/1:90,55:145:99:1527,0,2993 0/0:70,0:70:99:0,196,2509 0/1:50,43:93:99:1234,0,1505 0/0:82,0:82:99:0,226,2878 0/0:96,1:97:99:0,213,3139 0/0:78,0:78:99:0,217,2733 1/1:1,162:163:99:5269,390,0 0/1:61,53:114:99:1324,0,1737 0/1:55,42:97:99:1198,0,1669 0/1:44,32:76:99:847,0,1332 0/1:46,40:86:99:1076,0,1392 0/1:88,90:178:99:2540,0,2549 0/1:51,42:93:99:1079,0,1425 0/0:89,0:89:99:0,247,3111 0/1:54,40:94:99:1089,0,1568 0/1:37,36:73:99:1039,0,1081 0/0:81,0:81:99:0,220,2802 17 4435886 . T C 1475.52 . AC=27;AF=0.321;AN=84;BaseQRankSum=-12.630;DP=2126;Dels=0.00;FS=1617.689;HRun=3;HaplotypeScore=1.4475;InbreedingCoeff=-0.4732;MQ=58.59;MQ0=0;MQRankSum=2.589;QD=1.12;ReadPosRankSum=-17.308 GT:AD:DP:GQ:PL 0/0:27,12:39:47.99:0,48,787 0/1:29,29:58:57.12:57,0,794 0/0:29,10:39:0.68:0,1,928 0/1:57,34:91:10.77:11,0,1670 0/1:41,29:70:44.55:45,0,1262 0/1:38,18:57:40.15:40,0,1183 0/0:44,27:71:64.64:0,65,1453 0/0:28,16:44:11.99:0,12,856 0/1:20,14:34:46.88:47,0,569 0/1:18,19:37:99:103,0,456 0/0:27,14:41:11.91:0,12,800 0/0:25,15:41:34.71:0,35,676 0/0:28,6:34:54.61:0,55,898 0/1:20,14:34:49.02:49,0,591 0/0:72,31:103:37.40:0,37,2179 0/1:22,14:36:2.79:3,0,604 0/1:32,18:50:99:115,0,976 0/1:14,13:27:46.66:47,0,343 0/1:50,29:79:64.14:64,0,1446 0/1:56,34:91:73.10:73,0,1622 0/1:46,24:70:99:119,0,1325 0/0:45,21:66:31.41:0,31,1265 0/1:60,40:100:99:118,0,1698 0/1:33,26:59:99:101,0,924 0/0:35,17:52:75.35:0,75,1063 0/1:29,20:49:99:119,0,859 0/1:18,10:28:33.20:33,0,555 0/1:25,14:39:66.63:67,0,676 0/1:17,14:31:99:128,0,461 0/1:24,14:38:85.59:86,0,695 0/1:26,18:44:17.06:17,0,736 0/0:53,32:85:21.21:0,21,1539 0/0:36,19:55:21.41:0,21,1060 0/1:20,7:27:6.69:7,0,612 0/1:19,10:29:27.79:28,0,545 0/1:21,13:34:28.27:28,0,556 0/0:44,22:66:40.02:0,40,1305 0/0:26,14:40:17.17:0,17,797 0/0:19,10:29:24.22:0,24,567 0/1:25,10:36:18.11:18,0,757 0/1:21,12:33:49.71:50,0,625 0/1:29,10:39:78.27:78,0,807 17 4439683 . G C 2361.94 . AC=2;AF=0.024;AN=84;BaseQRankSum=8.912;DP=2435;Dels=0.00;FS=0.433;HRun=1;HaplotypeScore=1.7471;InbreedingCoeff=-0.0244;MQ=58.51;MQ0=0;MQRankSum=1.615;QD=13.27;ReadPosRankSum=1.208 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,150,1785 0/0:55,0:55:99:0,153,1826 0/0:29,0:29:87.22:0,87,990 0/1:41,46:87:99:1452,0,1124 0/1:57,34:91:99:972,0,1650 0/0:66,0:66:99:0,168,2041 0/0:56,0:56:99:0,147,1831 0/0:74,0:74:99:0,186,2285 0/0:32,0:32:87.22:0,87,1022 0/0:50,0:50:99:0,123,1530 0/0:49,1:50:99:0,138,1636 0/0:48,0:48:99:0,123,1498 0/0:39,0:39:99:0,111,1330 0/0:54,0:54:99:0,144,1702 0/0:131,0:132:99:0,349,4189 0/0:53,0:53:99:0,150,1760 0/0:58,0:58:99:0,144,1786 0/0:40,0:40:99:0,105,1241 0/0:79,1:81:99:0,196,2269 0/0:82,0:83:99:0,220,2654 0/0:73,1:75:99:0,177,2092 0/0:54,0:54:99:0,141,1709 0/0:102,0:102:99:0,280,3490 0/0:42,0:42:99:0,105,1345 0/0:49,0:49:99:0,126,1611 0/0:52,0:52:99:0,138,1690 0/0:43,0:43:99:0,117,1422 0/0:42,0:42:99:0,105,1269 0/0:44,0:44:99:0,114,1353 0/0:49,0:49:99:0,126,1499 0/0:49,0:49:99:0,138,1630 0/0:86,0:86:99:0,208,2458 0/0:50,0:50:99:0,141,1666 0/0:52,0:52:99:0,147,1711 0/0:53,0:53:99:0,141,1700 0/0:45,0:46:99:0,120,1449 0/0:77,0:79:99:0,196,2336 0/0:58,0:58:99:0,147,1729 0/0:43,0:43:99:0,111,1303 0/0:52,0:53:99:0,144,1612 0/0:30,0:30:81.22:0,81,935 0/0:49,0:49:99:0,141,1651 17 4439704 . C A 804.82 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.498;DP=1670;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.4898;InbreedingCoeff=-0.0244;MQ=58.66;MQ0=0;MQRankSum=-0.726;QD=11.18;ReadPosRankSum=-0.121 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,111,1181 0/0:29,0:29:72.18:0,72,810 0/0:28,0:28:78.22:0,78,908 0/0:64,0:65:99:0,162,1992 0/0:67,0:67:99:0,184,2270 0/0:50,0:50:99:0,144,1720 0/0:43,0:43:99:0,108,1343 0/0:59,0:59:99:0,141,1706 0/0:21,0:21:63.18:0,63,719 0/0:28,0:28:78.20:0,78,865 0/0:31,0:31:84.20:0,84,937 0/0:26,0:26:72.15:0,72,770 0/0:27,0:27:78.20:0,78,863 0/0:43,0:43:99:0,123,1386 0/0:78,1:79:99:0,189,2289 0/0:35,0:35:99:0,99,1099 0/0:45,0:45:99:0,123,1390 0/1:14,12:26:99:326,0,409 0/1:24,22:46:99:541,0,598 0/0:53,0:53:99:0,150,1701 0/0:52,0:52:99:0,144,1599 0/0:37,0:37:99:0,102,1113 0/0:90,0:90:99:0,232,2907 0/0:28,0:28:72.18:0,72,879 0/0:41,0:41:99:0,102,1255 0/0:31,0:31:78.21:0,78,957 0/0:31,0:32:90.21:0,90,1002 0/0:28,0:28:78.21:0,78,899 0/0:35,0:35:87.22:0,87,980 0/0:31,0:31:87.24:0,87,988 0/0:29,0:29:81.20:0,81,896 0/0:64,0:64:99:0,162,1900 0/0:37,0:37:99:0,105,1175 0/0:32,0:32:96.25:0,96,1072 0/0:38,1:39:99:0,111,1182 0/0:28,0:28:75.19:0,75,841 0/0:50,0:50:99:0,138,1510 0/0:26,0:26:75.19:0,75,835 0/0:32,0:32:87.23:0,87,988 0/0:38,0:38:99:0,105,1173 0/0:22,0:22:60.13:0,60,656 0/0:27,0:27:78.20:0,78,857 17 4445085 . G A 3572.26 . AC=2;AF=0.024;AN=84;BaseQRankSum=-13.815;DP=3118;Dels=0.00;FS=7.549;HRun=1;HaplotypeScore=3.1061;InbreedingCoeff=-0.0244;MQ=59.37;MQ0=0;MQRankSum=0.051;QD=10.09;ReadPosRankSum=3.410 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,132,1597 0/0:53,0:53:99:0,132,1710 0/0:42,0:42:99:0,114,1418 0/1:108,83:192:99:1972,0,3214 0/0:148,0:148:99:0,367,4865 0/0:117,0:117:99:0,304,3968 0/0:114,0:114:99:0,292,3908 0/0:135,0:135:99:0,364,4849 0/0:51,0:51:99:0,144,1782 0/0:46,0:46:99:0,114,1447 0/0:46,0:47:99:0,129,1599 0/0:39,0:39:99:0,102,1263 0/0:40,0:40:99:0,114,1409 0/0:62,0:62:99:0,165,2085 0/0:161,0:161:99:0,424,5320 0/0:64,0:64:99:0,178,2227 0/0:46,0:46:99:0,123,1557 0/0:44,0:44:99:0,120,1503 0/0:76,0:76:99:0,214,2683 0/0:111,0:112:99:0,307,3835 0/0:94,0:95:99:0,232,2930 0/0:68,0:68:99:0,169,2131 0/1:95,66:162:99:1600,0,2740 0/0:93,1:94:99:0,191,3009 0/0:102,0:102:99:0,259,3473 0/0:96,0:97:99:0,256,3416 0/0:42,0:42:99:0,117,1446 0/0:57,0:57:99:0,153,1928 0/0:44,0:44:99:0,123,1494 0/0:59,0:59:99:0,172,2093 0/0:40,0:41:99:0,114,1423 0/0:83,0:83:99:0,223,2773 0/0:67,0:67:99:0,175,2194 0/0:46,0:46:99:0,132,1620 0/0:64,0:64:99:0,171,2119 0/0:52,0:52:99:0,135,1691 0/0:79,0:79:99:0,205,2531 0/0:48,0:48:99:0,132,1647 0/0:40,0:41:99:0,108,1333 0/0:47,0:47:99:0,120,1476 0/0:37,0:37:99:0,108,1340 0/0:53,0:53:99:0,141,1803 17 4448389 . G T 13.73 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.016;DP=446;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3592;InbreedingCoeff=-0.0223;MQ=58.10;MQ0=0;MQRankSum=0.290;QD=1.96;ReadPosRankSum=-0.695 GT:AD:DP:GQ:PL 0/0:3,0:3:9.02:0,9,100 0/0:8,0:8:21.04:0,21,228 0/0:8,0:8:18.05:0,18,205 0/0:16,0:16:48.14:0,48,561 0/0:11,0:11:30.08:0,30,350 0/0:11,0:11:27.08:0,27,310 0/0:14,0:14:42.12:0,42,498 0/0:11,0:11:33.10:0,33,395 0/0:5,0:5:12.03:0,12,133 0/0:11,0:11:33.06:0,33,338 0/0:9,0:9:24.05:0,24,256 0/0:4,0:4:12.03:0,12,124 0/0:9,0:9:27.06:0,27,282 0/0:6,0:6:18.05:0,18,198 0/0:32,0:32:90.21:0,90,984 0/0:9,0:9:27.07:0,27,297 0/1:5,2:7:59.66:60,0,100 0/0:4,0:4:12.03:0,12,128 0/0:24,0:24:66.15:0,66,716 0/0:8,0:8:24.06:0,24,256 0/0:20,0:20:51.12:0,51,551 0/0:17,0:17:48.09:0,48,497 0/0:17,0:17:51.13:0,51,577 0/0:13,0:13:39.10:0,39,449 0/0:17,0:17:51.13:0,51,569 0/0:9,0:9:21.06:0,21,245 0/0:4,0:4:9.02:0,9,96 0/0:4,0:4:12.03:0,12,131 0/0:5,0:5:15.04:0,15,162 0/0:11,0:11:30.08:0,30,339 0/0:4,0:4:12.03:0,12,123 0/0:17,0:17:45.10:0,45,492 0/0:12,0:13:33.08:0,33,351 0/0:8,0:9:24.06:0,24,255 0/0:8,0:8:18.05:0,18,202 0/0:5,0:5:15.04:0,15,168 0/0:23,0:23:51.10:0,51,584 0/0:10,0:10:27.07:0,27,298 0/0:12,0:13:33.09:0,33,374 0/0:10,0:10:30.06:0,30,304 0/0:3,0:3:9.01:0,9,91 0/0:4,0:4:12.03:0,12,124 17 4448397 . T C 43.89 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.642;DP=504;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.4378;InbreedingCoeff=-0.0173;MQ=58.45;MQ0=0;MQRankSum=0.105;QD=5.49;ReadPosRankSum=-0.525 GT:AD:DP:GQ:PL 0/0:4,0:4:12.04:0,12,151 0/0:7,0:7:21.07:0,21,261 0/0:8,0:8:21.07:0,21,271 0/0:21,0:21:63.20:0,63,798 0/0:14,0:14:39.12:0,39,495 0/0:14,0:14:36.09:0,36,436 0/0:18,0:18:54.17:0,54,689 0/0:15,0:15:39.13:0,39,506 0/0:6,0:6:18.06:0,18,226 0/0:11,0:11:33.10:0,33,400 0/0:8,0:8:24.07:0,24,282 0/0:6,0:6:18.06:0,18,226 0/0:11,0:11:30.09:0,30,373 0/0:6,0:6:18.06:0,18,226 0/0:33,0:33:90.27:0,90,1092 0/0:11,0:11:30.09:0,30,374 0/1:5,3:8:90.06:90,0,155 0/0:6,0:6:15.05:0,15,193 0/0:26,0:26:75.23:0,75,935 0/0:9,0:9:27.08:0,27,329 0/0:21,0:21:54.17:0,54,678 0/0:17,0:17:48.15:0,48,597 0/0:19,0:19:54.17:0,54,687 0/0:15,0:15:45.15:0,45,587 0/0:18,0:18:54.17:0,54,682 0/0:9,0:9:27.06:0,27,321 0/0:5,0:5:15.05:0,15,185 0/0:4,0:4:12.04:0,12,150 0/0:5,0:5:15.04:0,15,180 0/0:11,0:11:30.10:0,30,383 0/0:5,0:5:12.04:0,12,148 0/0:26,0:26:66.21:0,66,838 0/0:14,0:14:42.13:0,42,511 0/0:10,0:10:24.08:0,24,313 0/0:9,0:9:21.06:0,21,271 0/0:7,0:7:18.06:0,18,233 0/0:23,0:23:60.18:0,60,728 0/0:11,0:11:33.09:0,33,401 0/0:13,0:13:33.11:0,33,420 0/0:10,0:10:30.09:0,30,366 0/0:5,0:5:15.05:0,15,186 0/0:5,0:5:15.04:0,15,175 17 4455500 . T C 79950.07 . AC=84;AF=1.000;AN=84;DP=2496;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.7317;InbreedingCoeff=-0.0000;MQ=59.22;MQ0=0;QD=32.03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1463,123,0 1/1:0,52:52:99:1577,138,0 1/1:0,33:33:96.26:1096,96,0 1/1:0,128:128:99:4425,352,0 1/1:0,117:117:99:4049,328,0 1/1:0,64:64:99:2303,184,0 1/1:0,63:63:99:2141,172,0 1/1:0,74:74:99:2476,199,0 1/1:0,34:34:90.26:1045,90,0 1/1:0,45:45:99:1376,120,0 1/1:0,30:30:84.23:974,84,0 1/1:0,35:35:99:1175,102,0 1/1:0,40:40:99:1268,111,0 1/1:0,42:42:99:1352,114,0 1/1:1,171:174:99:5251,445,0 1/1:0,54:54:99:1721,144,0 1/1:0,32:32:84.23:996,84,0 1/1:0,51:51:99:1572,135,0 1/1:0,73:73:99:2189,190,0 1/1:0,98:99:99:2902,247,0 1/1:0,73:73:99:2178,186,0 1/1:0,49:49:99:1531,132,0 1/1:0,135:137:99:4790,379,0 1/1:0,60:60:99:2136,174,0 1/1:1,94:95:99:3237,259,0 1/1:0,50:50:99:1743,141,0 1/1:0,31:31:90.25:1045,90,0 1/1:0,39:40:99:1257,111,0 1/1:0,34:34:93.23:1052,93,0 1/1:0,43:43:99:1365,117,0 1/1:0,51:52:99:1562,135,0 1/1:0,82:83:99:2356,205,0 1/1:0,38:38:99:1197,102,0 1/1:0,37:38:96.25:1112,96,0 1/1:0,53:53:99:1729,150,0 1/1:0,47:47:99:1491,129,0 1/1:0,59:60:99:1854,159,0 1/1:0,41:41:99:1257,108,0 1/1:0,38:38:99:1215,105,0 1/1:0,49:49:99:1518,135,0 1/1:0,52:52:99:1570,132,0 1/1:0,46:46:99:1402,120,0 17 4457510 . C G 2402.60 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.075;DP=4401;DS;Dels=0.00;FS=2.157;HRun=0;HaplotypeScore=1.9110;InbreedingCoeff=-0.0244;MQ=59.34;MQ0=0;MQRankSum=-0.152;QD=12.01;ReadPosRankSum=-1.636 GT:AD:DP:GQ:PL 0/0:86,0:86:99:0,235,2983 0/0:73,0:73:99:0,199,2509 0/0:88,0:88:99:0,223,2880 0/0:167,0:167:99:0,442,5977 0/0:172,0:172:99:0,451,6076 0/0:129,0:129:99:0,331,4469 0/0:115,0:115:99:0,304,4160 0/0:120,0:120:99:0,319,4254 0/0:89,0:89:99:0,247,3139 0/0:78,0:78:99:0,196,2529 0/0:65,0:65:99:0,181,2306 0/0:78,0:78:99:0,220,2790 0/1:39,27:66:99:649,0,1128 0/0:66,0:66:99:0,181,2308 0/0:243,0:243:99:0,638,8146 0/0:64,0:64:99:0,169,2146 0/0:87,0:87:99:0,238,3011 0/0:78,0:78:99:0,217,2706 0/0:184,0:184:99:0,469,6000 0/0:216,0:216:99:0,554,7063 0/0:163,0:164:99:0,415,5365 0/0:93,0:93:99:0,250,3210 0/0:178,0:178:99:0,451,6201 0/0:113,0:113:99:0,286,3891 0/0:149,0:149:99:0,382,5237 0/0:119,0:119:99:0,298,4117 0/0:44,0:44:99:0,129,1611 0/0:85,0:85:99:0,229,2880 0/0:73,0:73:99:0,199,2578 0/0:67,0:67:99:0,184,2327 0/0:54,0:54:99:0,153,1935 0/1:63,71:134:99:1816,0,1775 0/0:115,0:115:99:0,301,3834 0/0:92,0:92:99:0,241,3120 0/0:72,0:73:99:0,196,2485 0/0:86,0:86:99:0,229,2928 0/0:131,0:134:99:0,343,4380 0/0:77,0:77:99:0,196,2472 0/0:75,0:75:99:0,199,2510 0/0:70,0:70:99:0,202,2479 0/0:71,0:71:99:0,199,2486 0/0:71,0:71:99:0,202,2527 17 4457571 . C T 4627.76 . AC=6;AF=0.071;AN=84;BaseQRankSum=-16.593;DP=3094;DS;Dels=0.00;FS=4.726;HRun=0;HaplotypeScore=4.8086;InbreedingCoeff=0.2821;MQ=59.22;MQ0=0;MQRankSum=0.341;QD=13.90;ReadPosRankSum=-0.843 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,135,1694 0/1:34,23:57:99:587,0,1001 1/1:0,59:59:99:1847,156,0 0/0:108,0:108:99:0,289,3891 0/0:113,0:113:99:0,313,4277 0/0:94,0:96:99:0,253,3393 0/0:54,0:54:99:0,150,2026 0/0:77,0:77:99:0,199,2681 0/0:63,0:63:99:0,172,2179 0/0:46,0:46:99:0,132,1664 0/0:51,0:51:99:0,147,1855 0/0:50,0:50:99:0,144,1791 0/1:24,12:36:99:270,0,716 0/0:47,0:47:99:0,123,1571 0/0:205,0:205:99:0,527,6746 0/0:44,0:44:99:0,114,1447 0/0:57,0:57:99:0,160,2024 0/0:66,0:67:99:0,184,2285 0/0:131,0:131:99:0,325,4151 0/0:154,0:154:99:0,388,4963 0/0:109,0:109:99:0,298,3761 0/0:78,0:78:99:0,205,2637 0/0:125,0:125:99:0,325,4449 0/0:71,0:71:99:0,193,2623 0/0:85,0:85:99:0,220,3004 0/0:69,0:69:99:0,187,2540 0/0:44,0:44:99:0,108,1394 0/0:44,0:44:99:0,123,1555 0/0:46,0:46:99:0,120,1520 0/0:55,0:55:99:0,150,1893 0/0:34,0:34:99:0,99,1237 0/1:70,51:121:99:1284,0,1887 0/0:86,0:86:99:0,232,2967 0/0:59,0:59:99:0,163,2041 0/0:52,0:52:99:0,144,1829 0/1:36,24:60:99:640,0,1072 0/0:102,0:102:99:0,268,3364 0/0:59,0:59:99:0,147,1837 0/0:50,0:50:99:0,138,1766 0/0:54,0:54:99:0,156,1935 0/0:56,0:56:99:0,144,1849 0/0:72,0:72:99:0,196,2472 17 4497160 . T C 53139.65 . AC=55;AF=0.655;AN=84;BaseQRankSum=-8.639;DP=3147;DS;Dels=0.00;FS=2.191;HRun=0;HaplotypeScore=1.8258;InbreedingCoeff=-0.1060;MQ=58.67;MQ0=0;MQRankSum=1.484;QD=18.75;ReadPosRankSum=-2.811 GT:AD:DP:GQ:PL 0/1:43,29:72:99:628,0,1200 1/1:0,60:60:99:1814,153,0 1/1:0,61:61:99:1658,138,0 0/0:119,0:119:99:0,280,3551 0/1:55,40:95:99:1088,0,1355 1/1:0,78:78:99:2420,193,0 1/1:0,84:84:99:2571,199,0 1/1:0,86:86:99:2701,211,0 0/1:32,40:72:99:1112,0,781 0/0:57,0:57:99:0,153,1841 1/1:0,56:56:99:1721,144,0 1/1:0,58:59:99:1825,156,0 1/1:0,55:55:99:1519,126,0 1/1:0,65:65:99:1917,159,0 0/1:134,116:250:99:2762,0,3352 0/1:22,37:59:99:1028,0,591 1/1:0,68:68:99:2140,180,0 0/0:67,1:68:99:0,134,2026 0/1:58,50:108:99:1123,0,1426 0/1:36,35:71:99:835,0,912 0/1:28,32:62:99:847,0,695 0/1:19,24:43:99:574,0,462 0/1:84,76:160:99:2022,0,2167 0/1:31,25:56:99:667,0,934 0/1:57,30:87:99:763,0,1546 0/1:58,43:101:99:1040,0,1529 0/1:32,20:52:99:509,0,820 1/1:1,61:62:99:1886,132,0 0/1:28,22:50:99:491,0,840 1/1:0,69:70:99:1999,165,0 1/1:0,57:57:99:1715,144,0 0/1:41,42:84:99:1076,0,952 0/1:27,26:53:99:666,0,707 0/1:32,28:60:99:704,0,879 0/1:27,28:55:99:750,0,779 0/1:45,27:72:99:572,0,1213 0/1:43,38:81:99:953,0,1095 0/0:69,0:69:99:0,169,2087 1/1:0,61:61:99:1870,162,0 1/1:0,54:54:99:1776,153,0 1/1:0,58:58:99:1738,147,0 1/1:0,57:57:99:1661,138,0 17 4535303 . G GC 56.80 . AC=3;AF=0.036;AN=84;BaseQRankSum=-0.864;DP=1556;FS=543.541;HRun=1;HaplotypeScore=112.5817;InbreedingCoeff=-0.0615;MQ=58.52;MQ0=0;MQRankSum=2.061;QD=0.53;ReadPosRankSum=-14.817 GT:AD:DP:GQ:PL 0/0:37,0:37:62.79:0,63,989 0/0:23,7:30:2.35:1,0,631 0/0:31,0:30:41.36:0,41,752 0/0:81,0:80:99:0,141,2043 0/0:86,0:86:99:0,120,2325 0/0:59,0:59:35.68:0,36,1379 0/0:45,0:45:88.74:0,89,1150 0/0:48,0:48:67.47:0,67,1289 0/0:26,0:26:13.88:0,14,572 0/0:16,0:16:44.49:0,44,525 0/0:30,0:30:2.42:1,0,577 0/0:28,0:28:12.43:0,12,456 0/1:21,0:21:17.60:18,0,326 0/0:20,0:20:41.69:0,42,485 0/0:62,18:80:27.68:0,28,1648 0/0:30,0:30:18.17:0,18,623 0/0:26,0:26:7.89:0,8,517 0/0:23,0:23:9.90:0,10,462 0/1:42,16:58:91.16:91,0,787 0/0:60,0:60:99:0,129,1746 0/0:31,0:31:4.82:0,5,545 0/0:33,0:33:48.05:0,48,1057 0/0:88,0:88:99:0,130,2442 0/0:34,0:34:67.60:0,68,935 0/0:43,0:42:78.05:0,78,1071 0/0:36,0:34:84.25:0,84,1052 0/0:13,0:13:23.19:0,23,230 0/0:27,0:27:9.89:0,10,571 0/0:21,0:21:14.13:0,14,327 0/0:26,0:26:54.82:0,55,729 0/0:29,2:31:56.91:0,57,836 0/0:35,0:35:26.64:0,27,784 0/0:35,0:35:46.98:0,47,952 0/0:27,0:27:34.96:0,35,677 0/0:29,0:29:43.49:0,43,820 0/0:31,0:31:79.04:0,79,990 0/1:23,6:29:30.13:30,0,351 0/0:26,0:26:50.32:0,50,627 0/0:38,0:38:63.34:0,63,962 0/0:30,0:30:59.87:0,60,818 0/0:21,0:21:31.63:0,32,562 0/0:37,0:37:39.17:0,39,813 17 4535314 . G A 1016.40 . AC=3;AF=0.036;AN=84;BaseQRankSum=0.029;DP=1626;Dels=0.00;FS=2.061;HRun=0;HaplotypeScore=2.0443;InbreedingCoeff=-0.0370;MQ=58.69;MQ0=0;MQRankSum=0.697;QD=13.74;ReadPosRankSum=1.007 GT:AD:DP:GQ:PL 0/0:36,0:36:93.19:0,93,1051 0/0:32,0:32:90.21:0,90,991 0/0:31,0:31:81.24:0,81,958 0/0:78,0:78:99:0,205,2503 0/0:90,0:90:99:0,247,3003 0/0:54,0:54:99:0,138,1747 0/0:46,0:46:99:0,120,1492 0/0:45,0:45:99:0,120,1477 0/0:30,0:30:90.24:0,90,1024 0/0:18,0:19:48.12:0,48,520 0/0:29,0:29:72.22:0,72,885 0/0:29,0:29:75.21:0,75,864 0/0:20,0:20:60.14:0,60,671 0/0:21,0:21:54.11:0,54,595 0/0:95,0:95:99:0,232,2711 0/0:30,0:30:84.21:0,84,964 0/0:29,0:29:84.19:0,84,931 0/0:19,0:19:54.15:0,54,628 0/0:54,0:54:99:0,138,1559 0/0:64,0:64:99:0,171,1991 0/0:39,0:39:99:0,111,1223 0/0:39,0:39:99:0,111,1225 0/0:85,0:85:99:0,193,2476 0/0:39,0:39:99:0,102,1258 0/0:47,0:47:99:0,123,1532 0/0:40,0:40:99:0,102,1282 0/0:12,0:12:33.09:0,33,376 0/0:30,0:30:81.19:0,81,914 0/1:7,11:18:99:311,0,123 0/0:30,0:30:81.21:0,81,916 0/0:34,0:34:93.24:0,93,1055 0/0:40,0:40:99:0,108,1289 0/0:42,0:42:99:0,114,1277 0/1:13,16:29:99:491,0,292 0/0:28,0:28:72.18:0,72,812 0/1:15,12:27:99:290,0,422 0/0:33,0:33:87.23:0,87,993 0/0:31,0:31:87.22:0,87,965 0/0:36,0:36:96.27:0,96,1107 0/0:33,0:33:90.20:0,90,1010 0/0:21,0:21:51.14:0,51,591 0/0:42,0:42:99:0,105,1263 17 4535552 . C G 32.89 . AC=3;AF=0.036;AN=84;BaseQRankSum=-11.842;DP=2120;Dels=0.00;FS=192.974;HRun=1;HaplotypeScore=1.7290;InbreedingCoeff=-0.0667;MQ=58.63;MQ0=0;MQRankSum=-0.615;QD=0.27;ReadPosRankSum=-9.350 GT:AD:DP:GQ:PL 0/0:26,6:32:59.96:0,60,663 0/0:28,6:34:69.13:0,69,783 0/0:32,7:39:41.59:0,42,543 0/0:67,31:98:44.31:0,44,1278 0/0:59,16:75:99:0,99,1102 0/0:50,13:63:72.59:0,73,1091 0/0:51,9:60:96.18:0,96,1095 0/0:50,16:66:73.39:0,73,964 0/0:35,10:45:78.19:0,78,926 0/0:31,0:31:48.13:0,48,570 0/0:35,8:43:34.42:0,34,676 0/0:28,13:41:0.80:0,1,504 0/0:23,4:27:51.13:0,51,596 0/0:29,10:39:66.17:0,66,783 0/0:106,39:146:99:0,183,2497 0/0:21,7:28:42.11:0,42,489 0/1:25,7:32:25.28:25,0,640 0/0:21,6:27:42.10:0,42,480 0/0:59,20:80:2.91:0,0,1186 0/0:79,8:87:99:0,162,1901 0/0:50,20:70:4.79:0,5,1134 0/0:41,9:50:34.01:0,34,987 0/0:59,32:91:38.70:0,39,1121 0/0:36,8:44:37.37:0,37,602 0/0:43,11:54:5.15:0,5,710 0/0:48,14:62:58.44:0,58,871 0/0:24,1:25:57.14:0,57,642 0/0:19,11:31:42.12:0,42,498 0/0:29,5:34:48.14:0,48,574 0/0:36,0:36:72.20:0,72,880 0/0:36,5:41:38.57:0,39,740 0/0:61,11:72:93.83:0,94,1440 0/0:52,13:65:99:0,108,1294 0/1:22,10:32:10.35:10,0,481 0/0:31,1:32:60.15:0,60,725 0/0:33,11:44:63.16:0,63,746 0/1:41,16:57:65.41:65,0,912 0/0:38,6:44:59.97:0,60,619 0/0:31,7:38:72.16:0,72,835 0/0:37,9:47:84.21:0,84,963 0/0:20,8:28:0.49:9,0,420 0/0:22,7:30:54.15:0,54,638 17 4535552 . C CG 13.23 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.935;DP=2172;FS=381.547;HRun=1;HaplotypeScore=181.2161;InbreedingCoeff=-0.0350;MQ=58.56;MQ0=0;MQRankSum=1.892;QD=0.22;ReadPosRankSum=-16.646 GT:AD:DP:GQ:PL 0/0:33,0:33:50.99:0,51,865 0/0:34,0:34:53.36:0,53,849 0/0:41,0:41:18.96:0,19,671 0/0:100,0:100:91.81:0,92,1484 0/0:74,0:74:99:0,108,1447 0/0:64,0:62:81.04:0,81,1273 0/0:57,0:53:92.95:0,93,1370 0/0:65,0:62:72.24:0,72,1189 0/0:45,0:45:73.33:0,73,1064 0/0:32,0:32:70.66:0,71,824 0/0:42,0:42:26.62:0,27,813 0/0:42,0:42:2.66:1,0,709 0/0:27,0:27:51.23:0,51,754 0/0:39,0:39:58.56:0,59,865 0/0:151,0:151:85.17:0,85,2597 0/0:28,0:28:44.11:0,44,594 0/0:34,0:34:6.45:0,6,773 0/0:27,0:27:33.85:0,34,514 0/0:84,0:84:89.27:0,89,1454 0/0:91,0:91:99:0,189,2270 0/0:73,0:73:27.04:0,27,1295 0/0:49,0:49:73.43:0,73,1197 0/0:96,0:95:49.10:0,49,1451 0/0:44,0:43:49.78:0,50,756 0/0:52,0:52:24.27:0,24,836 0/0:61,0:54:74.19:0,74,1081 0/0:21,8:29:25.26:0,25,545 0/0:29,0:29:11.16:0,11,382 0/0:34,0:34:69.16:0,69,884 0/0:31,9:40:10.91:0,11,804 0/0:41,0:41:35:0,35,890 0/0:73,0:73:99:0,131,1806 0/0:66,0:66:99:0,109,1582 0/0:35,0:35:0.30:11,0,515 0/0:30,10:40:69.71:0,70,839 0/0:48,0:47:54.56:0,55,755 0/1:61,0:61:66.83:67,0,1027 0/0:44,0:44:33.67:0,34,700 0/0:38,2:40:36.87:0,37,872 0/0:48,1:49:78.40:0,78,1039 0/0:27,0:27:19.17:0,19,493 0/0:31,0:31:47.83:0,48,655 17 4542725 . C T 255.12 . AC=4;AF=0.048;AN=84;BaseQRankSum=1.333;DP=1977;Dels=0.00;FS=2.324;HRun=0;HaplotypeScore=3.5961;InbreedingCoeff=-0.0502;MQ=57.36;MQ0=15;MQRankSum=-13.968;QD=1.02;ReadPosRankSum=-3.155 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,111,1309 0/0:32,0:32:78.23:0,78,977 0/1:24,10:34:99:147,0,752 0/0:103,9:112:99:0,103,3088 0/0:95,5:100:99:0,195,3299 0/0:62,0:62:99:0,165,2081 0/0:53,0:54:99:0,123,1635 0/0:63,2:65:99:0,126,2036 0/0:31,0:31:87.25:0,87,1087 0/0:20,4:24:26.47:0,26,575 0/0:23,2:25:41.54:0,42,795 0/0:27,1:28:38.77:0,39,813 0/0:25,0:25:63.19:0,63,788 0/0:22,4:26:32.49:0,32,668 0/1:97,22:120:63.99:64,0,2816 0/0:30,3:33:56.57:0,57,967 0/0:31,2:33:21.80:0,22,936 0/1:32,6:38:34.08:34,0,893 0/0:67,4:71:93.23:0,93,1854 0/0:74,0:74:99:0,196,2393 0/0:65,3:68:99:0,108,1929 0/0:33,3:36:43.92:0,44,1030 0/0:117,0:117:99:0,310,3933 0/0:49,2:51:71.44:0,71,1632 0/0:70,0:70:99:0,178,2321 0/1:47,10:57:97.30:97,0,1487 0/0:28,0:28:78.24:0,78,961 0/0:29,0:29:78.22:0,78,942 0/0:27,0:27:75.22:0,75,919 0/0:34,0:35:90.23:0,90,1065 0/0:31,3:34:31.92:0,32,951 0/0:65,8:73:59.46:0,59,1961 0/0:43,4:47:23.63:0,24,1379 0/0:17,0:17:51.15:0,51,621 0/0:21,0:21:57.17:0,57,694 0/0:31,3:35:49.41:0,49,914 0/0:49,0:50:99:0,129,1506 0/0:37,0:37:93.26:0,93,1133 0/0:34,1:35:66.66:0,67,1107 0/0:19,0:19:57.16:0,57,689 0/0:36,0:36:99:0,102,1215 0/0:30,0:30:87.24:0,87,1052 17 4542833 . ACCAGGCGTCGT A 11.36 . AC=4;AF=0.048;AN=84;BaseQRankSum=5.723;DP=1738;FS=11.211;HRun=0;HaplotypeScore=349.3007;InbreedingCoeff=-0.0521;MQ=57.28;MQ0=0;MQRankSum=-5.673;QD=0.10;ReadPosRankSum=3.384 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,117,6438 0/0:24,0:24:69.24:0,69,3572 0/1:28,1:29:21:21,0,3757 0/0:61,1:61:99:0,178,9252 0/0:79,3:81:34.87:0,35,11909 0/0:43,0:42:99:0,129,6728 0/0:31,0:29:90.31:0,90,4860 0/0:50,2:51:34.61:0,35,7148 0/1:30,1:31:15.49:15,0,4514 0/1:20,2:21:43.35:43,0,3127 0/0:32,0:32:93.32:0,93,5117 0/1:26,1:27:24.84:25,0,4380 0/0:22,0:22:63.21:0,63,3304 0/0:25,4:25:75.25:0,75,3818 0/0:128,4:129:99:0,268,19302 0/0:32,0:32:90.31:0,90,4390 0/0:37,0:37:99:0,105,5694 0/0:28,0:28:81.27:0,81,4030 0/0:46,1:46:99:0,135,7324 0/0:65,0:65:99:0,190,9530 0/0:71,0:71:99:0,196,9191 0/0:32,0:32:93.32:0,93,5283 0/0:84,0:84:99:0,226,11433 0/0:41,0:40:99:0,114,5914 0/0:49,0:48:99:0,148,7859 0/0:48,2:49:38.15:0,38,7092 0/0:26,0:26:78.25:0,78,3836 0/0:35,0:35:96.33:0,96,5375 0/0:21,0:21:57.19:0,57,2606 0/0:30,0:30:84.29:0,84,4234 0/0:31,1:31:90.27:0,90,4829 0/0:55,3:56:63.24:0,63,8574 0/0:42,0:42:99:0,123,6514 0/0:26,0:26:78.27:0,78,4046 0/0:29,0:29:84.29:0,84,4245 0/0:38,2:39:6.06:0,6,5815 0/0:51,0:51:99:0,144,7692 0/0:25,0:25:66.23:0,66,3380 0/0:38,0:38:99:0,111,5754 0/0:33,0:33:90.31:0,90,4903 0/0:17,0:17:51.18:0,51,2528 0/0:42,0:42:99:0,120,6475 17 4542894 . A G 51.06 . AC=4;AF=0.048;AN=84;BaseQRankSum=2.164;DP=870;Dels=0.00;FS=15.770;HRun=1;HaplotypeScore=0.7077;InbreedingCoeff=-0.0630;MQ=54.31;MQ0=11;MQRankSum=-9.707;QD=0.56;ReadPosRankSum=4.134 GT:AD:DP:GQ:PL 0/0:17,0:18:51.14:0,51,581 0/0:16,4:20:8.69:0,9,446 0/0:11,3:14:1.65:3,0,282 0/0:39,2:41:79.59:0,80,1173 0/1:22,5:27:25.94:26,0,668 0/0:13,0:13:33.10:0,33,407 0/0:21,0:21:57.15:0,57,662 0/0:28,1:29:44.79:0,45,850 0/0:12,1:13:36.11:0,36,422 0/0:12,0:12:30.09:0,30,362 0/0:20,1:21:57.16:0,57,660 0/0:17,1:18:51.15:0,51,588 0/0:12,0:12:36.09:0,36,404 0/0:18,0:18:51.13:0,51,591 0/0:59,8:67:66.09:0,66,1716 0/0:17,1:18:8.69:0,9,433 0/0:23,0:23:69.20:0,69,797 0/0:20,2:22:26.73:0,27,621 0/0:26,2:28:75.19:0,75,866 0/0:31,0:31:87.25:0,87,1009 0/0:27,2:30:18.18:0,18,814 0/0:16,1:17:42.11:0,42,490 0/0:30,0:30:84.25:0,84,988 0/0:16,1:17:17.70:0,18,512 0/0:16,0:16:42.13:0,42,515 0/0:19,1:20:20.72:0,21,563 0/0:11,0:11:27.08:0,27,332 0/0:20,0:20:54.17:0,54,659 0/0:17,0:17:45.12:0,45,513 0/0:10,0:10:27.08:0,27,329 0/0:20,2:22:57.14:0,57,642 0/1:23,4:27:43.03:43,0,681 0/1:14,2:16:24.43:24,0,417 0/0:12,0:12:30.09:0,30,368 0/0:15,0:15:45.13:0,45,522 0/1:18,4:22:43.14:43,0,512 0/0:26,0:26:75.21:0,75,869 0/0:11,0:11:33.09:0,33,376 0/0:17,1:18:45.13:0,45,522 0/0:21,0:21:57.17:0,57,689 0/0:7,0:7:18.05:0,18,222 0/0:19,0:19:57.14:0,57,650 17 4578471 . G A 120.90 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.167;DP=902;Dels=0.00;FS=1.445;HRun=0;HaplotypeScore=0.8742;InbreedingCoeff=-0.0122;MQ=59.04;MQ0=1;MQRankSum=-0.552;QD=4.48;ReadPosRankSum=1.967 GT:AD:DP:GQ:PL 0/0:15,0:15:36.09:0,36,407 0/0:15,0:15:42.11:0,42,481 0/0:17,0:17:45.13:0,45,540 0/0:38,0:38:99:0,105,1260 0/1:19,8:27:99:167,0,512 0/0:27,0:27:63.19:0,63,790 0/0:30,0:30:81.22:0,81,989 0/0:34,0:34:96.22:0,96,1151 0/0:14,0:14:39.10:0,39,438 0/0:13,0:13:33.09:0,33,383 0/0:17,0:17:42.10:0,42,456 0/0:13,0:13:36.10:0,36,412 0/0:15,0:15:39.11:0,39,468 0/0:24,0:24:63.17:0,63,710 0/0:49,0:49:99:0,126,1465 0/0:9,0:9:27.05:0,27,287 0/0:13,0:13:33.10:0,33,399 0/0:19,0:19:54.14:0,54,621 0/0:29,0:30:78.20:0,78,871 0/0:44,0:44:99:0,108,1266 0/0:34,0:34:93.28:0,93,1126 0/0:21,0:21:54.15:0,54,624 0/0:40,0:40:99:0,105,1328 0/0:21,0:21:54.16:0,54,675 0/0:33,0:33:81.22:0,81,1026 0/0:30,0:32:81.22:0,81,969 0/0:12,0:12:30.09:0,30,370 0/0:24,0:25:63.16:0,63,722 0/0:12,0:12:33.08:0,33,362 0/0:22,0:22:57.16:0,57,683 0/0:12,0:12:33.09:0,33,371 0/0:25,1:26:31.36:0,31,696 0/0:21,0:21:57.14:0,57,645 0/0:12,0:12:33.10:0,33,385 0/0:9,0:9:27.06:0,27,292 0/0:18,0:18:48.12:0,48,531 0/0:21,0:22:54.15:0,54,641 0/0:9,0:9:24.07:0,24,285 0/0:18,0:18:45.11:0,45,506 0/0:14,0:14:39.09:0,39,444 0/0:12,0:12:36.10:0,36,425 0/0:14,0:14:39.08:0,39,413 17 4585821 . G A 3574.19 . AC=4;AF=0.048;AN=84;BaseQRankSum=-5.004;DP=3548;DS;Dels=0.00;FS=3.240;HRun=3;HaplotypeScore=1.8304;InbreedingCoeff=-0.0500;MQ=59.30;MQ0=0;MQRankSum=0.845;QD=11.87;ReadPosRankSum=0.029 GT:AD:DP:GQ:PL 0/0:79,0:79:99:0,217,2734 0/0:63,0:63:99:0,150,1929 0/0:64,0:64:99:0,178,2210 0/0:91,1:92:99:0,232,3048 0/0:84,0:84:99:0,211,2787 0/1:43,41:84:99:1116,0,1349 0/1:42,31:73:99:837,0,1330 0/0:67,0:67:99:0,181,2421 0/0:74,0:74:99:0,196,2458 0/0:65,0:65:99:0,169,2144 0/0:74,0:74:99:0,205,2564 0/0:80,1:82:99:0,220,2703 0/0:75,0:75:99:0,199,2492 0/0:74,0:74:99:0,199,2457 0/0:248,1:250:99:0,641,8076 0/0:65,0:65:99:0,162,2075 0/0:85,1:86:99:0,217,2741 0/0:69,1:70:99:0,144,2226 0/0:131,0:131:99:0,346,4254 0/0:158,0:158:99:0,385,4943 0/0:154,0:154:99:0,382,4812 0/0:71,1:72:99:0,153,2311 0/0:104,0:104:99:0,265,3519 0/0:102,0:102:99:0,262,3538 0/0:70,1:71:99:0,181,2358 0/0:47,0:47:99:0,117,1543 0/0:59,0:59:99:0,159,2043 0/0:59,0:59:99:0,162,2024 0/0:53,1:54:99:0,144,1805 0/0:56,0:56:99:0,150,1916 0/0:64,0:64:99:0,172,2180 0/0:112,0:112:99:0,298,3781 0/0:98,1:99:99:0,259,3259 0/1:28,32:60:99:931,0,803 0/0:67,0:67:99:0,184,2289 0/1:55,29:84:99:690,0,1591 0/0:115,1:116:99:0,295,3859 0/0:75,0:75:99:0,202,2565 0/0:62,0:62:99:0,169,2103 0/0:79,0:79:99:0,208,2583 0/0:78,0:78:99:0,220,2732 0/0:64,0:64:99:0,178,2261 17 4586236 . C G 90.18 . AC=8;AF=0.095;AN=84;BaseQRankSum=-6.874;DP=459;Dels=0.00;FS=349.382;HRun=3;HaplotypeScore=0.4937;InbreedingCoeff=-0.1702;MQ=58.02;MQ0=0;MQRankSum=-0.665;QD=1.43;ReadPosRankSum=-7.259 GT:AD:DP:GQ:PL 0/0:9,1:10:25.88:0,26,264 0/0:7,1:8:2.70:1,0,198 0/1:5,3:8:40.64:41,0,119 0/0:12,3:15:33.10:0,33,387 0/0:11,5:16:4.55:0,5,356 0/0:11,0:11:33.06:0,33,362 0/0:6,0:6:18.05:0,18,209 0/1:5,1:6:21.28:21,0,145 0/0:6,0:6:15.04:0,15,159 0/1:5,2:7:8.65:9,0,135 0/0:8,2:10:2.65:1,0,201 0/1:6,3:9:66.61:67,0,166 0/0:7,0:7:21.04:0,21,217 0/0:5,0:5:15.04:0,15,161 0/0:35,7:42:47.24:0,47,926 0/0:9,1:10:22.30:0,22,254 0/0:7,2:9:1.30:5,0,205 0/0:9,2:11:26.10:0,26,262 0/0:8,0:8:24.06:0,24,261 0/0:9,6:15:1.04:0,1,187 0/1:8,1:9:13.73:14,0,203 0/0:13,5:18:12.38:0,12,327 0/0:20,3:23:52.04:0,52,610 0/0:6,2:8:16.29:0,16,176 0/0:8,0:8:21.06:0,21,243 0/0:4,3:7:12.04:0,12,144 0/0:7,0:7:18.05:0,18,198 0/0:10,1:11:0.57:0,1,277 0/0:9,0:9:24.06:0,24,257 0/0:5,0:5:15.02:0,15,150 0/1:7,4:11:5.58:6,0,195 0/0:11,3:14:7.39:0,7,293 0/0:17,2:19:41.57:0,42,459 0/0:8,1:9:21.06:0,21,239 0/0:8,3:11:1.59:4,0,225 0/0:4,0:4:12.03:0,12,125 0/0:17,1:18:18.43:0,18,425 0/0:11,1:12:30.07:0,30,317 0/0:11,2:13:1.43:0,1,263 0/0:10,1:11:30.07:0,30,312 0/1:3,1:4:22.32:22,0,92 0/1:6,3:9:15.93:16,0,169 17 4586245 . G C 167.34 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.214;DP=353;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.4684;InbreedingCoeff=-0.0393;MQ=57.97;MQ0=0;MQRankSum=1.289;QD=7.61;ReadPosRankSum=-0.388 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,294 0/0:8,0:8:21.05:0,21,252 0/0:7,0:7:21.07:0,21,263 0/0:12,0:12:30.10:0,30,395 0/0:11,0:11:33.09:0,33,418 0/0:10,0:10:27.09:0,27,347 0/0:3,0:3:9.02:0,9,109 0/0:6,0:6:18.05:0,18,223 0/0:3,0:3:9.03:0,9,108 0/0:6,0:6:15.05:0,15,188 0/0:7,0:7:18.06:0,18,228 0/0:6,0:6:12.04:0,12,148 0/0:4,0:4:6.02:0,6,76 0/0:4,0:4:12.04:0,12,149 0/0:32,0:32:90.25:0,90,1086 0/0:8,0:8:24.08:0,24,301 0/0:7,0:7:21.07:0,21,267 0/0:9,0:9:27.08:0,27,331 0/0:9,0:9:27.08:0,27,334 0/0:11,0:11:21.07:0,21,267 0/0:8,0:8:24.08:0,24,302 0/0:12,0:12:36.11:0,36,445 0/0:17,0:17:48.15:0,48,626 0/0:6,0:6:18.06:0,18,235 0/0:6,0:6:18.06:0,18,235 0/0:6,0:6:15.04:0,15,185 0/0:6,0:6:15.05:0,15,189 0/0:7,0:7:21.07:0,21,267 0/0:8,0:8:24.07:0,24,294 0/1:2,5:7:60.51:80,0,61 0/0:9,0:9:24.05:0,24,280 0/0:12,0:12:33.09:0,33,390 0/1:9,6:15:99:150,0,290 0/0:8,0:8:24.07:0,24,300 0/0:7,0:7:21.06:0,21,256 0/0:4,0:4:9.03:0,9,110 0/0:14,0:14:42.11:0,42,508 0/0:8,0:8:24.07:0,24,291 0/0:10,0:10:27.08:0,27,330 0/0:5,0:5:15.05:0,15,188 0/0:2,0:2:6.02:0,6,71 0/0:5,0:5:12.03:0,12,144 17 4607400 . C G 50.70 . AC=4;AF=0.048;AN=84;BaseQRankSum=-4.773;DP=471;Dels=0.00;FS=115.508;HRun=1;HaplotypeScore=0.7104;InbreedingCoeff=-0.0709;MQ=58.01;MQ0=0;MQRankSum=-0.643;QD=1.30;ReadPosRankSum=-1.338 GT:AD:DP:GQ:PL 0/0:7,1:8:21.04:0,21,246 0/0:3,0:3:6.02:0,6,72 0/0:8,1:9:18.05:0,18,219 0/0:20,2:22:54.18:0,54,716 0/0:20,3:23:57.14:0,57,698 0/0:19,0:19:54.15:0,54,713 0/0:17,1:18:26.47:0,26,604 0/0:16,0:16:42.14:0,42,564 0/0:7,0:7:21.06:0,21,250 0/0:5,0:5:12.02:0,12,133 0/0:7,1:8:18.03:0,18,209 0/0:5,0:5:15.05:0,15,190 0/1:3,1:4:17.59:18,0,93 0/0:11,2:13:27.08:0,27,331 0/0:20,2:22:57.17:0,57,686 0/0:9,2:11:24.06:0,24,277 0/0:11,1:12:33.09:0,33,397 0/0:5,2:7:15.05:0,15,185 0/0:9,0:9:27.08:0,27,323 0/1:10,2:12:14.19:14,0,200 0/0:8,1:9:24.07:0,24,287 0/0:12,2:14:30.09:0,30,375 0/0:26,0:26:72.23:0,72,946 0/0:13,1:14:36.09:0,36,452 0/0:20,0:20:51.16:0,51,652 0/0:10,2:12:24.08:0,24,322 0/0:8,0:8:21.04:0,21,237 0/0:6,1:7:17.72:0,18,190 0/0:6,0:6:15.05:0,15,189 0/0:7,1:8:18.04:0,18,219 0/0:11,1:12:30.10:0,30,384 0/0:16,1:17:36.12:0,36,466 0/0:11,0:11:18.03:0,18,205 0/0:5,1:6:15.05:0,15,188 0/0:3,1:5:9.03:0,9,106 0/1:7,4:11:53.74:54,0,217 0/1:7,5:12:46.72:47,0,167 0/0:9,0:9:27.08:0,27,325 0/0:11,0:11:27.07:0,27,334 0/0:5,1:6:9.03:0,9,118 0/0:7,0:7:21.06:0,21,254 0/0:6,1:7:0.56:9,0,179 17 4619729 . C T 1408.80 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.458;DP=4075;DS;Dels=0.00;FS=3.032;HRun=2;HaplotypeScore=3.7877;InbreedingCoeff=-0.0244;MQ=58.83;MQ0=0;MQRankSum=-0.978;QD=10.75;ReadPosRankSum=3.614 GT:AD:DP:GQ:PL 0/0:84,0:84:99:0,196,2506 0/0:64,0:64:99:0,172,2155 0/0:67,0:67:99:0,153,2020 0/0:187,0:187:99:0,470,6288 0/0:167,0:167:99:0,412,5596 0/0:163,0:163:99:0,385,5204 0/0:106,0:106:99:0,253,3423 0/0:139,1:140:99:0,305,4628 0/0:69,0:69:99:0,178,2307 0/0:82,0:82:99:0,199,2606 0/0:69,0:69:99:0,169,2152 0/0:72,0:72:99:0,184,2337 0/0:74,0:74:99:0,190,2423 0/0:61,0:61:99:0,150,1950 0/0:250,0:250:99:0,569,7391 0/0:89,0:89:99:0,238,3018 0/0:69,0:69:99:0,178,2258 0/0:61,0:61:99:0,150,1908 0/0:109,0:109:99:0,253,3233 0/0:145,0:145:99:0,364,4575 0/0:116,0:116:99:0,280,3562 0/0:63,0:64:99:0,175,2173 0/0:233,0:233:99:0,527,7172 0/0:100,0:100:99:0,256,3467 0/0:142,0:142:99:0,322,4433 0/0:108,0:108:99:0,271,3656 0/0:59,0:59:99:0,150,1938 0/0:74,0:74:99:0,202,2584 0/0:65,0:65:99:0,162,2089 0/0:66,0:66:99:0,166,2091 0/0:57,0:57:99:0,153,1982 0/0:129,1:130:99:0,304,3971 0/0:86,0:86:99:0,205,2669 0/1:31,24:55:99:601,0,870 0/0:72,0:72:99:0,190,2400 0/1:44,32:76:99:870,0,1281 0/0:96,0:96:99:0,232,2903 0/0:83,0:83:99:0,196,2504 0/0:61,0:61:99:0,165,2072 0/0:70,0:70:99:0,184,2334 0/0:67,0:67:99:0,175,2243 0/0:65,0:66:99:0,163,2082 17 4641755 . C T 39418.24 . AC=66;AF=0.786;AN=84;BaseQRankSum=-9.572;DP=1643;Dels=0.00;FS=7.065;HRun=0;HaplotypeScore=0.7626;InbreedingCoeff=0.0101;MQ=59.36;MQ0=0;MQRankSum=1.241;QD=25.30;ReadPosRankSum=0.565 GT:AD:DP:GQ:PL 1/1:0,30:30:78.24:974,78,0 0/1:13,14:27:99:413,0,404 0/1:22,13:35:99:322,0,665 0/1:48,28:76:99:691,0,1408 0/1:25,22:47:99:622,0,758 1/1:0,35:35:90.29:1180,90,0 1/1:0,38:38:93.28:1186,93,0 1/1:0,34:34:87.26:1082,87,0 1/1:0,29:29:81.25:1004,81,0 1/1:0,28:28:75.22:905,75,0 1/1:0,31:31:84.24:1047,84,0 1/1:0,28:28:66.21:841,66,0 1/1:0,23:23:63.20:785,63,0 1/1:0,29:29:66.20:833,66,0 1/1:0,111:111:99:3435,274,0 1/1:0,29:29:69.22:887,69,0 1/1:0,26:26:72.21:868,72,0 0/1:12,13:25:99:374,0,341 1/1:0,52:52:99:1615,132,0 1/1:0,52:52:99:1634,132,0 1/1:2,69:71:99:2168,150,0 0/1:20,22:42:99:598,0,530 1/1:0,47:47:99:1533,120,0 0/1:20,18:38:99:447,0,580 0/1:26,29:55:99:736,0,712 1/1:0,34:34:96.30:1207,96,0 0/1:10,16:26:99:405,0,261 1/1:0,26:26:75.23:926,75,0 0/0:16,0:16:42.11:0,42,526 0/1:20,19:39:99:510,0,562 1/1:0,27:27:75.21:909,75,0 1/1:0,60:60:99:1913,153,0 0/1:20,19:39:99:474,0,557 1/1:0,36:36:96.30:1199,96,0 1/1:0,34:34:90.26:1102,90,0 1/1:0,35:35:93.29:1149,93,0 0/0:69,0:69:99:0,171,2120 0/1:24,21:45:99:609,0,521 0/1:12,7:19:99:168,0,361 1/1:0,37:37:96.30:1193,96,0 1/1:0,30:30:87.26:1064,87,0 0/1:17,16:33:99:409,0,499 17 4645669 . C T 2647.14 . AC=2;AF=0.024;AN=84;BaseQRankSum=10.640;DP=3203;DS;Dels=0.00;FS=13.991;HRun=0;HaplotypeScore=2.8025;InbreedingCoeff=-0.0244;MQ=58.82;MQ0=0;MQRankSum=0.397;QD=14.39;ReadPosRankSum=1.003 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,135,1453 0/0:55,0:55:99:0,156,1656 0/0:55,0:55:99:0,147,1613 0/0:149,0:149:99:0,427,4988 0/0:143,0:144:99:0,406,4851 0/1:48,53:102:99:1489,0,1342 0/1:39,43:82:99:1220,0,1094 0/0:124,0:124:99:0,331,3913 0/0:45,0:45:99:0,123,1345 0/0:53,0:53:99:0,144,1541 0/0:43,0:43:99:0,120,1294 0/0:60,0:60:99:0,147,1574 0/0:37,0:37:99:0,105,1127 0/0:47,0:47:99:0,132,1429 0/0:158,0:158:99:0,418,4458 0/0:57,0:57:99:0,153,1657 0/0:51,0:51:99:0,147,1592 0/0:41,0:41:99:0,117,1250 0/0:106,0:106:99:0,289,3096 0/0:120,0:120:99:0,346,3762 0/0:114,0:116:99:0,322,3451 0/0:83,0:84:99:0,222,2311 0/0:158,1:159:99:0,448,5269 0/0:88,0:88:99:0,253,3008 0/0:118,0:118:99:0,319,3742 0/0:75,0:75:99:0,208,2406 0/0:40,0:40:99:0,111,1222 0/0:42,0:42:99:0,114,1172 0/0:38,0:38:99:0,108,1147 0/0:57,0:57:99:0,159,1721 0/0:57,0:57:99:0,159,1719 0/0:128,0:128:99:0,358,3837 0/0:90,0:90:99:0,256,2745 0/0:46,0:47:99:0,129,1389 0/0:55,0:55:99:0,150,1586 0/0:54,0:54:99:0,150,1611 0/0:118,0:119:99:0,319,3400 0/0:56,0:56:99:0,153,1672 0/0:52,0:52:99:0,141,1525 0/0:50,0:50:99:0,114,1198 0/0:50,0:50:99:0,144,1586 0/0:47,0:47:99:0,132,1441 17 4684095 . G A 19291.70 . AC=48;AF=0.571;AN=84;BaseQRankSum=9.507;DP=1148;Dels=0.00;FS=37.805;HRun=0;HaplotypeScore=0.7406;InbreedingCoeff=0.0277;MQ=59.05;MQ0=0;MQRankSum=1.045;QD=20.44;ReadPosRankSum=0.336 GT:AD:DP:GQ:PL 1/1:0,21:21:60.17:711,60,0 1/1:0,18:18:51.16:613,51,0 0/1:6,9:15:99:260,0,148 0/1:36,28:64:99:789,0,1049 0/1:43,38:81:99:1095,0,1227 1/1:0,38:38:99:1281,102,0 0/1:20,22:42:99:581,0,583 0/1:19,12:31:99:353,0,570 1/1:1,18:19:50.82:579,51,0 1/1:0,21:21:54.15:658,54,0 0/1:7,10:17:99:236,0,197 0/1:11,10:21:99:260,0,294 0/1:7,4:11:99:113,0,177 0/1:13,10:23:99:208,0,327 0/1:23,21:44:99:589,0,603 0/0:27,0:27:78.21:0,78,889 1/1:0,19:19:54.15:643,54,0 0/1:12,13:25:99:380,0,308 1/1:0,23:23:57.16:677,57,0 1/1:0,32:32:87.26:1054,87,0 0/0:24,0:24:60.17:0,60,700 0/1:10,17:27:99:383,0,277 1/1:1,69:70:99:2244,184,0 1/1:0,30:30:84.23:1022,84,0 1/1:0,34:34:99:1175,99,0 0/1:23,15:38:99:444,0,657 1/1:0,10:10:30.09:360,30,0 0/1:9,6:15:99:168,0,252 0/1:9,6:15:99:171,0,217 0/0:20,0:20:60.16:0,60,659 0/0:29,0:29:87.24:0,87,995 0/1:8,10:18:99:247,0,205 0/1:16,7:23:99:128,0,457 1/1:0,23:23:66.20:800,66,0 1/1:0,15:15:39.12:471,39,0 0/1:12,10:22:99:271,0,334 0/0:37,0:37:99:0,99,1127 0/0:25,0:25:66.16:0,66,750 0/1:9,7:16:99:134,0,242 0/0:26,0:26:69.19:0,69,790 0/0:16,0:16:45.10:0,45,494 0/1:13,10:23:99:194,0,361 17 4712617 . C T 11220.44 . AC=9;AF=0.107;AN=84;BaseQRankSum=7.328;DP=3754;Dels=0.00;FS=0.385;HRun=0;HaplotypeScore=1.7260;InbreedingCoeff=-0.1200;MQ=59.22;MQ0=0;MQRankSum=0.625;QD=12.20;ReadPosRankSum=-0.465 GT:AD:DP:GQ:PL 0/0:61,0:61:99:0,159,1874 0/0:84,0:84:99:0,217,2605 0/1:39,38:77:99:1046,0,1040 0/1:94,69:163:99:1972,0,2691 0/0:164,0:165:99:0,433,5491 0/0:156,0:156:99:0,397,5116 0/1:79,46:125:99:1323,0,2391 0/0:107,0:107:99:0,280,3581 0/0:59,0:59:99:0,165,1969 0/0:74,0:74:99:0,196,2341 0/0:65,0:65:99:0,178,2104 0/0:48,0:48:99:0,138,1632 0/0:56,0:56:99:0,150,1737 0/1:23,35:58:99:907,0,613 0/0:225,0:228:99:0,587,6963 0/0:61,0:61:99:0,171,2014 0/0:51,0:51:99:0,138,1628 0/0:48,0:48:99:0,129,1564 0/0:121,0:123:99:0,316,3750 0/0:130,0:130:99:0,349,4139 0/1:57,54:112:99:1529,0,1556 0/0:78,0:79:99:0,211,2479 0/1:84,62:146:99:1746,0,2412 0/0:108,0:108:99:0,271,3488 0/0:132,0:132:99:0,343,4417 0/0:128,0:128:99:0,331,4189 0/0:51,0:51:99:0,141,1637 0/0:57,0:57:99:0,147,1761 0/0:52,0:52:99:0,132,1574 0/0:66,0:66:99:0,168,2077 0/0:69,0:69:99:0,184,2260 0/1:70,35:106:99:907,0,1871 0/0:75,0:75:99:0,205,2370 0/0:70,0:70:99:0,190,2274 0/0:66,0:66:99:0,187,2216 0/0:64,0:64:99:0,165,1984 0/0:116,0:118:99:0,307,3689 0/0:63,0:63:99:0,165,1984 0/0:64,0:64:99:0,168,2002 0/1:41,32:73:99:927,0,1099 0/0:56,0:56:99:0,147,1767 0/1:30,30:60:99:865,0,836 17 4712641 . C T 1934.77 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.173;DP=3883;Dels=0.00;FS=3.970;HRun=1;HaplotypeScore=1.5332;InbreedingCoeff=-0.0244;MQ=59.22;MQ0=0;MQRankSum=-0.753;QD=13.63;ReadPosRankSum=0.595 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,168,1971 0/0:80,0:80:99:0,202,2430 0/0:68,0:68:99:0,186,2157 0/0:165,0:165:99:0,418,5304 0/0:177,0:177:99:0,457,5788 0/0:146,0:146:99:0,364,4699 0/0:120,0:120:99:0,319,4097 0/0:116,0:116:99:0,295,3822 0/0:63,0:63:99:0,174,2086 0/0:68,0:68:99:0,181,2144 0/0:72,0:72:99:0,196,2282 0/0:59,0:59:99:0,162,1907 0/0:57,0:57:99:0,168,1917 0/0:68,0:68:99:0,181,2159 0/0:211,1:212:99:0,514,6542 0/0:70,0:70:99:0,193,2273 0/0:62,0:62:99:0,165,1955 0/0:51,0:51:99:0,141,1669 0/0:128,0:131:99:0,331,3917 0/0:132,0:132:99:0,361,4308 0/0:122,1:123:99:0,316,3742 0/0:92,0:92:99:0,250,2947 0/0:157,0:157:99:0,427,5493 0/0:110,0:110:99:0,268,3478 0/0:122,0:122:99:0,316,4054 0/0:123,0:123:99:0,319,4037 0/0:42,0:42:99:0,117,1360 0/0:59,0:59:99:0,159,1911 0/0:51,0:51:99:0,138,1634 0/0:63,0:63:99:0,171,2049 0/0:65,0:65:99:0,178,2105 0/0:122,0:122:99:0,286,3549 0/0:84,0:84:99:0,235,2775 0/0:66,0:66:99:0,168,2020 0/0:79,0:79:99:0,220,2631 0/0:75,0:75:99:0,193,2318 0/0:127,0:127:99:0,328,3896 0/0:74,0:74:99:0,193,2287 0/0:68,0:68:99:0,177,2113 0/1:37,42:80:99:1155,0,1017 0/1:32,30:62:99:842,0,804 0/0:57,0:57:99:0,156,1882 17 4717994 . C T 380.06 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.554;DP=1659;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.8154;InbreedingCoeff=-0.0120;MQ=59.13;MQ0=0;MQRankSum=0.438;QD=12.67;ReadPosRankSum=0.386 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,114,1474 0/0:38,0:38:99:0,105,1320 0/0:34,0:34:90.28:0,90,1158 0/0:48,0:48:99:0,135,1820 0/0:52,0:52:99:0,144,1931 0/0:38,0:38:99:0,105,1457 0/0:30,0:30:75.22:0,75,1019 0/0:37,0:37:99:0,102,1384 0/0:37,0:37:99:0,99,1267 0/0:36,0:36:96.30:0,96,1218 0/0:26,0:26:69.22:0,69,892 0/0:34,0:34:87.27:0,87,1095 0/0:23,0:23:60.19:0,60,765 0/0:27,0:27:72.22:0,72,917 0/0:95,0:95:99:0,241,3085 0/0:41,0:41:99:0,111,1398 0/0:28,0:28:72.23:0,72,933 0/0:22,0:22:60.19:0,60,756 0/0:65,0:65:99:0,175,2192 0/0:58,0:58:99:0,150,1963 0/0:53,0:53:99:0,135,1703 0/0:48,0:48:99:0,126,1580 0/0:58,0:58:99:0,157,2119 0/0:31,0:31:81.27:0,81,1120 0/0:48,0:48:99:0,135,1810 0/0:38,0:38:93.29:0,93,1237 0/0:21,0:21:63.20:0,63,780 0/0:31,0:31:90.29:0,90,1139 0/0:22,0:22:63.19:0,63,788 0/0:25,0:25:66.21:0,66,854 0/0:30,0:30:75.23:0,75,960 0/0:61,0:61:99:0,159,2011 0/0:54,0:54:99:0,138,1757 0/0:22,0:22:60.19:0,60,751 0/1:15,15:30:99:426,0,435 0/0:32,0:32:93.30:0,93,1186 0/0:64,0:64:99:0,169,2147 0/0:48,0:48:99:0,129,1644 0/0:37,0:37:99:0,105,1347 0/0:40,0:40:99:0,108,1366 0/0:26,0:26:72.22:0,72,913 0/0:30,0:30:84.26:0,84,1052 17 4720469 . C T 133567.62 . AC=42;AF=0.500;AN=84;BaseQRankSum=-53.202;DP=9716;DS;Dels=0.00;FS=22.701;HRun=0;HaplotypeScore=6.1651;InbreedingCoeff=-0.1429;MQ=59.36;MQ0=0;MQRankSum=0.523;QD=17.57;ReadPosRankSum=-1.247 GT:AD:DP:GQ:PL 0/1:130,105:235:99:2646,0,3865 0/1:139,100:239:99:2614,0,4007 0/1:108,96:204:99:2566,0,2967 0/0:243,0:243:99:0,677,8814 0/1:132,112:244:99:2887,0,4121 1/1:0,244:244:99:8040,665,0 0/1:123,122:245:99:3188,0,3708 0/1:136,105:241:99:2720,0,4271 0/1:132,118:250:99:3008,0,3877 1/1:0,206:206:99:6514,560,0 0/1:102,97:199:99:2558,0,2918 0/1:123,76:199:99:1938,0,3621 0/0:190,0:191:99:0,509,6365 0/1:127,115:243:99:2994,0,3626 0/1:132,117:250:99:3054,0,3922 0/1:123,118:241:99:3087,0,3565 1/1:2,231:233:99:7418,569,0 0/0:227,1:229:99:0,604,7809 0/0:243,0:245:99:0,683,8372 0/1:139,111:250:99:2856,0,4011 1/1:0,236:236:99:7736,653,0 1/1:1,242:243:99:7604,614,0 0/1:134,111:245:99:2813,0,4312 1/1:1,234:235:99:7255,555,0 1/1:2,236:239:99:7513,560,0 1/1:0,250:250:99:7719,641,0 0/1:115,86:202:99:2242,0,3286 0/0:244,0:244:99:0,665,8302 0/1:129,96:225:99:2570,0,3545 0/0:238,2:240:99:0,614,8124 0/0:232,1:233:99:0,629,7750 1/1:0,238:239:99:7586,647,0 0/1:119,115:234:99:2938,0,3426 0/1:109,101:210:99:2738,0,3205 0/1:116,111:227:99:2946,0,3303 0/1:131,107:238:99:2793,0,3844 0/0:248,0:248:99:0,695,8464 0/0:240,0:240:99:0,656,8184 0/1:100,104:204:99:2900,0,3024 0/1:124,109:233:99:2885,0,3637 0/1:117,98:215:99:2483,0,3317 0/1:102,103:205:99:2761,0,2918 17 4793052 . C T 426.20 . AC=9;AF=0.113;AN=80;BaseQRankSum=5.266;DP=158;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2036;InbreedingCoeff=0.2488;MQ=56.31;MQ0=0;MQRankSum=-0.904;QD=15.22;ReadPosRankSum=-0.415 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,161 0/0:2,0:2:6.01:0,6,60 0/0:2,0:2:3:0,3,28 0/0:2,0:2:6.02:0,6,68 0/0:2,0:2:6.02:0,6,75 0/0:2,0:2:6.02:0,6,73 0/0:1,0:1:3.01:0,3,32 ./. 0/0:3,0:3:9.02:0,9,95 0/0:3,0:3:9.02:0,9,92 0/0:3,0:3:9.01:0,9,88 0/0:3,0:3:8.98:0,9,73 0/0:2,0:2:3.01:0,3,31 0/0:3,0:3:9.02:0,9,90 0/0:7,0:8:15.03:0,15,158 0/0:3,0:3:9.02:0,9,93 ./. 0/0:6,0:6:18.04:0,18,184 0/0:6,0:7:15.03:0,15,150 0/0:7,0:7:21.05:0,21,219 0/1:5,1:6:18.93:19,0,150 0/0:9,0:10:27.04:0,27,273 0/0:7,0:7:21.06:0,21,236 0/1:0,1:1:1.76:39,3,0 0/0:2,0:2:6.02:0,6,66 0/0:1,0:1:3.01:0,3,34 0/0:2,0:2:6.02:0,6,71 0/0:4,0:4:9.02:0,9,96 0/0:2,0:2:6.02:0,6,72 0/0:5,0:5:12.02:0,12,120 0/1:2,2:4:48.08:58,0,48 0/1:1,2:3:24.41:65,0,24 0/0:4,0:4:12.02:0,12,126 0/0:4,0:4:12.02:0,12,119 0/0:7,0:7:21.03:0,21,215 0/0:4,0:4:12.03:0,12,134 1/1:0,4:4:12.04:140,12,0 0/1:2,1:3:28.78:29,0,49 1/1:1,6:7:18.05:208,18,0 0/0:4,0:4:9.02:0,9,93 0/0:4,0:4:12.04:0,12,147 0/0:5,0:5:9.02:0,9,93 17 4797910 . G A 135.60 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.534;DP=730;Dels=0.00;FS=8.413;HRun=1;HaplotypeScore=0.6487;InbreedingCoeff=-0.0128;MQ=58.81;MQ0=0;MQRankSum=0.570;QD=11.30;ReadPosRankSum=-0.988 GT:AD:DP:GQ:PL 0/0:19,0:19:54.16:0,54,656 0/0:18,0:18:45.13:0,45,565 0/0:15,0:15:42.13:0,42,522 0/0:17,0:17:48.15:0,48,625 0/0:16,0:16:39.13:0,39,525 0/0:13,0:13:39.09:0,39,497 0/0:6,0:6:15.05:0,15,203 0/0:7,0:7:21.07:0,21,275 0/0:14,0:14:36.10:0,36,447 0/0:11,0:11:30.09:0,30,370 0/0:21,1:22:29.59:0,30,692 0/0:15,0:15:42.13:0,42,518 0/0:11,0:11:33.11:0,33,418 0/0:9,0:9:27.09:0,27,340 0/0:63,0:63:99:0,153,1923 0/0:24,0:24:72.21:0,72,895 0/0:21,0:21:51.16:0,51,650 0/0:13,0:13:39.10:0,39,467 0/0:26,0:26:72.23:0,72,919 0/0:35,0:35:96.25:0,96,1175 0/0:25,0:25:72.23:0,72,908 0/0:19,0:19:54.17:0,54,688 0/0:29,0:29:69.23:0,69,941 0/0:16,0:16:45.14:0,45,591 0/0:9,0:9:24.07:0,24,307 0/0:13,0:13:27.09:0,27,376 0/0:16,0:16:45.11:0,45,554 0/0:13,0:13:30.09:0,30,388 0/1:6,6:12:99:182,0,165 0/0:15,0:15:39.12:0,39,476 0/0:11,0:11:27.08:0,27,327 0/0:28,0:28:69.21:0,69,888 0/0:19,0:19:51.16:0,51,631 0/0:9,0:9:24.07:0,24,286 0/0:16,0:16:42.13:0,42,531 0/0:13,0:13:36.11:0,36,461 0/0:25,0:25:63.18:0,63,770 0/0:15,0:15:42.10:0,42,504 0/0:13,0:13:36.12:0,36,462 0/0:18,0:18:48.15:0,48,602 0/0:12,0:12:33.10:0,33,421 0/0:9,0:9:21.07:0,21,268 17 4799069 . G A 354.81 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.692;DP=1514;Dels=0.00;FS=3.711;HRun=2;HaplotypeScore=1.2140;InbreedingCoeff=-0.0120;MQ=59.29;MQ0=0;MQRankSum=0.020;QD=12.67;ReadPosRankSum=-0.766 GT:AD:DP:GQ:PL 0/0:31,0:31:84.27:0,84,1079 0/0:32,0:32:90.27:0,90,1116 0/0:35,0:35:90.28:0,90,1159 0/0:48,0:48:99:0,120,1628 0/0:38,0:38:99:0,102,1376 0/0:37,0:37:96.31:0,96,1305 0/0:43,0:43:99:0,105,1442 0/0:29,0:29:75.25:0,75,1021 0/0:32,0:32:84.27:0,84,1092 0/0:25,0:25:69.19:0,69,854 0/0:35,0:35:84.26:0,84,1071 0/0:33,0:33:87.28:0,87,1132 0/0:36,0:37:93.27:0,93,1194 0/0:30,0:30:81.26:0,81,1047 0/0:106,0:107:99:0,265,3401 0/0:15,0:15:45.14:0,45,555 0/0:30,0:30:87.26:0,87,1082 0/0:22,0:22:54.17:0,54,709 0/0:52,0:52:99:0,147,1860 0/0:51,0:51:99:0,132,1688 0/0:50,0:50:99:0,138,1773 0/0:43,0:43:99:0,111,1436 0/0:48,0:48:99:0,126,1736 0/0:29,0:29:78.24:0,78,1059 0/0:32,0:32:75.24:0,75,1024 0/0:25,0:25:66.21:0,66,888 0/0:27,0:27:72.23:0,72,924 0/0:30,0:30:78.24:0,78,996 0/0:31,0:31:84.27:0,84,1077 0/0:31,0:31:72.23:0,72,953 0/0:43,0:43:99:0,120,1485 0/0:60,0:61:99:0,153,1922 0/0:42,0:42:99:0,114,1459 0/0:23,0:23:57.17:0,57,733 0/0:24,0:24:60.19:0,60,774 0/0:35,0:35:90.23:0,90,1131 0/0:39,0:39:99:0,105,1343 0/0:34,0:34:87.28:0,87,1130 0/0:26,0:26:78.24:0,78,971 0/0:27,0:27:75.23:0,75,941 0/0:24,0:24:69.22:0,69,879 0/1:14,14:28:99:401,0,416 17 4804902 . G A 1175.41 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.661;DP=2100;Dels=0.00;FS=2.198;HRun=0;HaplotypeScore=1.8311;InbreedingCoeff=-0.0370;MQ=59.35;MQ0=0;MQRankSum=-0.237;QD=12.78;ReadPosRankSum=0.501 GT:AD:DP:GQ:PL 0/0:43,0:44:99:0,120,1429 0/0:47,0:47:99:0,138,1700 0/0:36,0:36:96.29:0,96,1195 0/0:89,0:89:99:0,223,2883 0/0:87,0:87:99:0,238,3066 0/0:69,0:69:99:0,190,2469 0/0:49,0:49:99:0,132,1693 0/0:86,0:86:99:0,220,2837 0/1:16,15:31:99:471,0,421 0/0:37,0:37:93.27:0,93,1151 0/1:18,12:30:99:322,0,542 0/0:31,0:31:84.25:0,84,1008 0/1:15,16:31:99:458,0,442 0/0:33,0:33:93.27:0,93,1116 0/0:126,0:127:99:0,349,4255 0/0:40,0:41:99:0,114,1396 0/0:45,0:45:99:0,123,1509 0/0:35,0:35:96.28:0,96,1170 0/0:51,0:51:99:0,135,1644 0/0:72,0:72:99:0,196,2390 0/0:58,0:58:99:0,150,1835 0/0:28,0:28:78.22:0,78,939 0/0:78,0:78:99:0,223,2945 0/0:50,0:50:99:0,132,1749 0/0:87,0:87:99:0,223,2958 0/0:68,0:69:99:0,178,2370 0/0:44,0:44:99:0,120,1417 0/0:41,0:41:99:0,105,1272 0/0:40,0:40:99:0,114,1408 0/0:32,0:32:93.28:0,93,1127 0/0:40,0:40:99:0,117,1445 0/0:63,0:63:99:0,165,2046 0/0:46,0:46:99:0,117,1437 0/0:38,0:38:99:0,111,1318 0/0:19,0:19:51.16:0,51,649 0/0:43,0:43:99:0,114,1431 0/0:58,0:59:99:0,168,1988 0/0:41,0:41:99:0,111,1335 0/0:41,0:41:99:0,117,1382 0/0:31,0:31:84.26:0,84,1050 0/0:36,0:36:99:0,102,1226 0/0:45,0:45:99:0,123,1463 17 4856110 . C T 73.79 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.914;DP=755;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5986;InbreedingCoeff=-0.0131;MQ=59.01;MQ0=0;MQRankSum=0.269;QD=6.15;ReadPosRankSum=0.987 GT:AD:DP:GQ:PL 0/0:16,0:16:42.12:0,42,524 0/0:11,0:11:24.06:0,24,272 0/0:11,0:11:30.09:0,30,375 0/0:22,0:22:51.16:0,51,678 0/0:22,0:22:60.19:0,60,795 0/0:15,0:15:39.13:0,39,518 0/0:14,0:14:36.12:0,36,486 0/1:7,5:12:99:120,0,238 0/0:18,0:18:48.15:0,48,622 0/0:18,0:18:51.16:0,51,631 0/0:21,0:21:60.19:0,60,759 0/0:16,0:16:48.15:0,48,599 0/0:17,0:17:48.14:0,48,600 0/0:15,0:15:45.13:0,45,552 0/0:54,0:54:99:0,129,1636 0/0:5,0:5:15.05:0,15,193 0/0:11,0:11:33.10:0,33,410 0/0:13,0:13:36.11:0,36,451 0/0:41,0:41:99:0,99,1222 0/0:31,0:31:72.23:0,72,948 0/0:33,0:33:84.24:0,84,1049 0/0:23,0:23:60.18:0,60,762 0/0:21,1:22:23.20:0,23,720 0/0:7,0:7:15.05:0,15,212 0/0:14,0:14:36.12:0,36,496 0/0:11,0:11:27.09:0,27,360 0/0:11,0:11:33.10:0,33,416 0/0:12,1:14:33.10:0,33,411 0/0:26,0:26:66.19:0,66,846 0/0:16,0:16:39.12:0,39,494 0/0:9,0:9:24.08:0,24,315 0/0:26,0:26:66.21:0,66,855 0/0:17,0:17:45.14:0,45,576 0/0:21,0:21:54.17:0,54,697 0/0:14,0:14:39.11:0,39,488 0/0:14,0:14:39.12:0,39,499 0/0:22,0:22:63.19:0,63,772 0/0:14,0:14:39.13:0,39,502 0/0:18,0:18:45.14:0,45,567 0/0:15,0:15:42.13:0,42,529 0/0:9,0:9:24.07:0,24,290 0/0:16,0:16:48.15:0,48,603 17 4885441 . G C 109.02 . 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C A 2486.62 . 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A C 14665.23 . 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T G 5901.16 . 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C T 5983.91 . 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C T 7564.68 . 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C G 14906.79 . 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C A 34195.42 . 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G A 6574.44 . 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T C 210.77 . 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G A 1301.24 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.734;DP=3186;Dels=0.00;FS=5.892;HRun=0;HaplotypeScore=2.2939;InbreedingCoeff=-0.0244;MQ=58.94;MQ0=0;MQRankSum=-1.507;QD=13.01;ReadPosRankSum=-1.811 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,169,2160 0/0:53,0:53:99:0,153,1892 0/0:57,0:57:99:0,156,1956 0/0:155,0:156:99:0,391,5231 0/0:145,0:145:99:0,370,4968 0/0:92,0:92:99:0,223,3065 0/0:69,0:69:99:0,178,2390 0/0:96,0:96:99:0,253,3395 0/0:52,0:52:99:0,147,1845 0/0:73,0:73:99:0,199,2444 0/0:49,0:49:99:0,132,1614 0/0:59,0:59:99:0,159,1995 0/0:50,1:51:99:0,106,1687 0/0:55,0:55:99:0,144,1827 0/0:203,0:203:99:0,512,6478 0/0:64,0:64:99:0,169,2106 0/0:56,0:56:99:0,153,1925 0/0:50,0:50:99:0,138,1725 0/0:99,0:99:99:0,256,3218 0/0:101,0:101:99:0,247,3183 0/0:93,0:93:99:0,256,3151 0/0:64,0:64:99:0,172,2131 0/0:140,0:140:99:0,361,4909 0/0:85,0:85:99:0,223,3021 0/0:99,0:99:99:0,268,3635 0/0:95,0:95:99:0,241,3246 0/0:54,0:54:99:0,138,1742 0/0:54,0:54:99:0,150,1848 0/1:26,26:52:99:702,0,665 0/0:63,0:63:99:0,175,2194 0/0:64,0:64:99:0,169,2134 0/0:76,0:76:99:0,199,2493 0/0:60,0:60:99:0,166,2079 0/0:67,0:67:99:0,202,2461 0/0:53,0:53:99:0,150,1891 0/0:68,0:68:99:0,187,2336 0/0:81,0:81:99:0,226,2696 0/0:50,0:50:99:0,144,1782 0/1:24,24:48:99:662,0,703 0/0:65,0:65:99:0,181,2231 0/0:55,0:55:99:0,153,1909 0/0:53,0:53:99:0,132,1681 17 6021379 . A G 8271.11 . AC=42;AF=0.500;AN=84;BaseQRankSum=-32.476;DP=2713;Dels=0.00;FS=3200.000;HRun=3;HaplotypeScore=0.9451;InbreedingCoeff=-0.9951;MQ=58.58;MQ0=0;MQRankSum=0.646;QD=3.05;ReadPosRankSum=-28.251 GT:AD:DP:GQ:PL 0/1:31,25:56:99:276,0,857 0/1:22,13:35:99:194,0,668 0/1:26,21:47:99:414,0,777 0/1:105,35:140:99:218,0,3245 0/1:91,32:123:99:166,0,2950 0/1:62,17:79:94.56:95,0,2029 0/1:56,15:71:9.40:9,0,1786 0/1:62,16:78:91.59:92,0,1969 0/1:32,14:46:99:219,0,984 0/1:36,20:56:99:384,0,1155 0/1:26,13:39:99:126,0,715 0/1:33,19:52:99:224,0,1004 0/1:32,16:48:99:159,0,1002 0/1:32,25:57:99:315,0,847 0/1:117,52:169:99:205,0,3352 0/1:40,17:57:99:174,0,1185 0/1:21,22:43:99:375,0,543 0/1:25,14:39:99:175,0,782 0/1:49,28:77:99:359,0,1505 0/1:54,23:77:96.82:97,0,1528 0/1:65,25:90:99:130,0,2084 0/1:41,19:60:99:150,0,1244 0/1:81,27:108:99:245,0,2640 0/1:51,20:71:99:166,0,1658 0/1:69,22:91:99:147,0,2249 0/1:54,18:72:99:122,0,1665 0/1:20,18:38:99:327,0,585 0/1:29,16:45:99:199,0,893 0/1:39,15:54:32.57:33,0,1139 0/1:41,19:60:99:198,0,1228 0/1:34,19:53:99:241,0,1028 0/1:44,23:67:99:111,0,1188 0/1:35,23:58:99:211,0,1026 0/1:32,16:48:99:222,0,1017 0/1:39,18:57:99:108,0,1104 0/1:34,17:51:99:189,0,1081 0/1:45,17:62:83.58:84,0,1361 0/1:38,10:48:31.84:32,0,1221 0/1:37,17:54:99:163,0,1163 0/1:36,21:57:99:367,0,1018 0/1:18,19:37:99:372,0,503 0/1:24,19:43:99:180,0,719 17 6350823 . T G 252.61 . AC=8;AF=0.095;AN=84;BaseQRankSum=-30.925;DP=5141;DS;Dels=0.00;FS=3200.000;HRun=2;HaplotypeScore=1.9526;InbreedingCoeff=-0.1290;MQ=55.59;MQ0=66;MQRankSum=5.731;QD=0.31;ReadPosRankSum=-35.414 GT:AD:DP:GQ:PL 0/1:68,19:87:60.14:60,0,2044 0/1:84,23:107:13.68:14,0,2481 0/1:66,19:85:28.20:28,0,1839 0/0:159,31:190:99:0,252,5348 0/0:153,33:186:99:0,271,5163 0/0:147,26:174:99:0,261,5004 0/0:137,34:171:99:0,120,4244 0/0:138,41:179:58.90:0,59,4384 0/0:75,13:88:77.69:0,78,2324 0/0:61,11:72:99:0,148,1993 0/0:73,16:89:49.93:0,50,2345 0/0:80,20:101:99:0,131,2583 0/1:58,18:76:51.96:52,0,1531 0/0:80,21:102:99:0,124,2465 0/0:163,23:187:99:0,232,5312 0/0:72,14:86:71.23:0,71,2192 0/0:78,25:103:4.04:0,4,2411 0/0:69,13:82:99:0,122,2401 0/0:156,34:190:99:0,205,4759 0/0:146,33:179:99:0,225,4390 0/0:141,40:181:99:0,127,4304 0/1:80,23:103:69.73:70,0,2443 0/0:161,24:185:99:0,266,5521 0/0:129,28:157:99:0,207,4309 0/0:138,39:177:92.54:0,93,4355 0/0:135,49:185:35.92:0,36,3962 0/0:70,20:90:11.12:0,11,2114 0/0:83,16:99:40.65:0,41,2652 0/0:72,18:90:23:0,23,2192 0/0:65,11:76:99:0,105,2120 0/0:74,12:86:92.34:0,92,2396 0/0:123,40:164:4.66:0,5,3682 0/1:84,24:108:52.90:53,0,2401 0/0:81,17:98:5.15:0,5,2511 0/0:77,11:88:99:0,115,2655 0/0:74,14:88:64.60:0,65,2358 0/1:133,34:167:46.20:46,0,3882 0/0:80,15:95:99:0,154,2539 0/1:68,17:85:46.65:47,0,2092 0/0:80,23:103:1.03:6,0,2417 0/0:61,12:73:99:0,113,1967 0/0:94,15:109:99:0,116,3082 17 6350923 . A G 1456.95 . AC=4;AF=0.048;AN=84;BaseQRankSum=4.819;DP=1124;Dels=0.00;FS=9.972;HRun=2;HaplotypeScore=0.8453;InbreedingCoeff=0.1273;MQ=51.03;MQ0=40;MQRankSum=2.547;QD=13.25;ReadPosRankSum=0.775 GT:AD:DP:GQ:PL 0/1:4,13:17:2.15:330,0,2 0/1:5,15:20:95.32:448,0,95 0/0:19,1:20:54.13:0,54,631 0/0:47,1:48:99:0,126,1480 0/0:46,0:46:99:0,120,1451 0/0:47,0:47:99:0,132,1519 0/0:33,0:33:75.23:0,75,915 0/1:22,15:37:99:357,0,667 0/0:19,0:19:51.15:0,51,592 0/0:19,0:19:51.15:0,51,601 0/0:21,0:21:54.16:0,54,636 0/0:18,0:18:48.14:0,48,580 0/0:13,0:13:36.10:0,36,420 0/0:22,1:23:54.15:0,54,628 0/0:43,1:45:99:0,99,1135 0/0:28,1:29:78.19:0,78,903 0/0:17,0:17:45.14:0,45,542 0/0:19,0:19:45.13:0,45,529 0/0:38,1:41:90.25:0,90,1061 0/0:33,1:34:96.18:0,96,1057 0/0:30,1:32:72.19:0,72,855 0/0:29,0:29:87.24:0,87,1003 0/0:54,0:54:99:0,150,1766 0/0:28,0:29:84.21:0,84,971 0/0:36,0:36:93.24:0,93,1100 0/0:23,1:24:63.19:0,63,752 0/0:19,1:20:48.14:0,48,562 0/0:15,0:15:36.11:0,36,429 0/0:19,0:19:51.15:0,51,609 0/0:20,0:20:48.15:0,48,585 0/0:15,1:16:39.08:0,39,433 0/0:39,0:39:99:0,111,1280 0/1:22,14:36:99:408,0,648 0/0:24,0:24:66.19:0,66,785 0/0:21,0:21:57.14:0,57,648 0/0:18,1:19:48.13:0,48,568 0/0:32,0:32:87.25:0,87,1044 0/0:12,1:13:27.06:0,27,303 0/0:31,0:31:78.20:0,78,884 0/0:15,0:15:42.13:0,42,508 0/0:16,0:16:36.10:0,36,421 0/0:17,1:18:45.10:0,45,518 17 6350970 . A C 66.81 . AC=7;AF=0.083;AN=84;BaseQRankSum=-6.915;DP=853;Dels=0.00;FS=191.806;HRun=2;HaplotypeScore=0.5151;InbreedingCoeff=-0.1273;MQ=53.56;MQ0=26;MQRankSum=1.924;QD=0.55;ReadPosRankSum=-7.080 GT:AD:DP:GQ:PL 0/0:3,3:6:9.03:0,9,108 0/0:11,3:14:24.55:0,25,295 0/0:7,3:10:1.06:6,0,218 0/0:28,8:36:47.93:0,48,844 0/0:23,16:39:69.20:0,69,820 0/0:26,7:33:72.20:0,72,855 0/0:17,3:20:45.13:0,45,539 0/0:24,4:28:66.18:0,66,771 0/0:10,9:19:27.08:0,27,325 0/0:10,3:13:1.60:4,0,263 0/0:11,3:14:24.05:0,24,258 0/1:5,2:7:15.55:16,0,124 0/1:6,6:12:11.45:11,0,178 0/0:14,5:19:31.30:0,31,396 0/0:36,10:46:97.98:0,98,1103 0/0:17,4:22:16.72:0,17,503 0/0:7,2:9:18.05:0,18,210 0/0:14,3:17:36.10:0,36,423 0/1:17,9:26:34.74:35,0,452 0/0:22,6:28:63.15:0,63,718 0/0:15,10:25:1.31:0,1,380 0/1:11,14:25:63.13:63,0,281 0/0:24,4:28:63.18:0,63,739 0/0:16,6:22:45.13:0,45,524 0/0:14,3:17:7.76:0,8,411 0/0:14,7:21:16.48:0,16,470 0/0:5,3:8:15.03:0,15,170 0/0:12,3:15:10.39:0,10,327 0/0:15,8:23:40.36:0,40,469 0/0:12,2:14:3.59:0,4,349 0/1:8,5:13:15.38:15,0,165 0/0:19,13:34:10.77:0,11,467 0/0:19,5:24:28.45:0,28,561 0/0:12,2:14:33.10:0,33,392 0/0:8,3:11:21.06:0,21,251 0/1:14,9:23:20.93:21,0,399 0/0:18,2:20:51.16:0,51,620 0/0:16,4:20:42.12:0,42,492 0/0:17,8:25:18.50:0,18,497 0/1:11,3:15:8.43:8,0,234 0/0:16,5:21:29.56:0,30,352 0/0:12,5:17:30.09:0,30,355 17 6607318 . C T 386.80 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.211;DP=1155;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.0361;InbreedingCoeff=-0.0244;MQ=58.63;MQ0=0;MQRankSum=-0.194;QD=8.41;ReadPosRankSum=-0.003 GT:AD:DP:GQ:PL 0/0:24,0:24:69.13:0,69,732 0/0:21,0:21:60.15:0,60,658 0/0:21,0:21:57.14:0,57,636 0/0:55,0:55:99:0,144,1694 0/0:45,0:47:99:0,132,1539 0/0:23,0:23:63.17:0,63,715 0/0:10,0:10:30.07:0,30,333 0/0:23,0:23:69.13:0,69,766 0/0:32,0:32:87.24:0,87,1003 0/0:21,0:21:54.13:0,54,603 0/0:23,0:23:66.15:0,66,726 0/0:28,0:28:69.15:0,69,745 0/0:21,0:21:60.16:0,60,688 0/0:29,0:30:84.19:0,84,944 0/0:63,0:64:99:0,168,1845 0/0:26,0:26:75.20:0,75,827 0/0:29,0:29:84.20:0,84,926 0/0:24,0:24:69.19:0,69,786 0/0:24,0:24:60.16:0,60,680 0/0:46,0:46:99:0,126,1401 0/0:40,0:41:99:0,105,1146 0/0:24,0:24:63.16:0,63,706 0/0:52,0:52:99:0,147,1715 0/0:23,0:24:63.16:0,63,739 0/0:30,0:30:87.24:0,87,1003 0/0:21,0:21:57.14:0,57,669 0/0:21,0:21:57.16:0,57,652 0/0:21,0:21:63.16:0,63,695 0/0:25,0:25:66.19:0,66,782 0/0:17,0:17:51.12:0,51,547 0/0:24,0:24:72.18:0,72,808 0/0:37,0:37:99:0,105,1165 0/0:20,0:20:57.14:0,57,630 0/0:13,0:13:39.09:0,39,411 0/0:26,0:26:78.16:0,78,819 0/0:28,0:28:75.19:0,75,849 0/1:17,11:28:99:220,0,366 0/1:9,9:18:99:229,0,243 0/0:18,0:18:54.13:0,54,602 0/0:14,0:14:39.11:0,39,460 0/0:26,0:26:69.18:0,69,781 0/0:35,0:35:96.18:0,96,1026 17 6899559 . C G 1968.10 . AC=58;AF=1.000;AN=58;DP=66;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0316;InbreedingCoeff=-0.1347;MQ=57.77;MQ0=0;QD=29.82 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:34,3,0 ./. 1/1:0,2:2:3.01:45,3,0 ./. ./. ./. 1/1:0,2:2:6.02:81,6,0 ./. 1/1:0,3:3:3.01:35,3,0 1/1:0,2:2:6.02:78,6,0 1/1:0,1:1:3.01:32,3,0 1/1:0,1:1:3.01:37,3,0 1/1:0,1:1:3.01:38,3,0 1/1:0,8:8:15.04:186,15,0 1/1:0,3:3:9.03:114,9,0 1/1:0,1:1:3.01:39,3,0 1/1:0,2:2:6.01:67,6,0 1/1:0,1:1:3:29,3,0 1/1:0,5:5:15.05:184,15,0 1/1:0,1:1:3.01:35,3,0 1/1:0,2:2:6.02:73,6,0 ./. ./. 1/1:0,1:1:3.01:41,3,0 ./. ./. 1/1:0,1:1:3.01:38,3,0 1/1:0,1:1:3.01:35,3,0 1/1:0,1:1:3.01:38,3,0 1/1:0,2:2:6.02:77,6,0 1/1:0,3:3:6.02:77,6,0 1/1:0,1:1:3.01:36,3,0 ./. ./. 1/1:0,3:3:6.01:65,6,0 1/1:0,4:4:9.03:112,9,0 1/1:0,2:2:6.01:59,6,0 ./. 1/1:0,5:5:12.02:137,12,0 1/1:0,4:4:9.03:121,9,0 1/1:0,2:2:6.02:70,6,0 17 6908625 . G A 2530.64 . 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C T 20675.28 . 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C T 2131.38 . 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G T 2820.38 . 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A G 15.15 . 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G A 20306.18 . 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C A 966.98 . 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A G 73523.75 . AC=57;AF=0.679;AN=84;BaseQRankSum=28.458;DP=3331;DS;Dels=0.00;FS=1.773;HRun=0;HaplotypeScore=2.1641;InbreedingCoeff=0.0721;MQ=58.86;MQ0=0;MQRankSum=1.477;QD=24.48;ReadPosRankSum=1.177 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1664,138,0 1/1:0,50:50:99:1712,138,0 1/1:0,71:72:99:2231,184,0 1/1:0,129:129:99:4590,349,0 1/1:0,106:107:99:3836,292,0 0/1:44,44:88:99:1335,0,1112 0/1:48,35:83:99:1088,0,1353 0/1:41,58:99:99:1753,0,1074 0/0:66,0:66:99:0,177,2072 0/1:23,20:44:99:561,0,666 0/1:30,31:61:99:820,0,805 0/0:69,0:69:99:0,196,2255 0/1:30,38:68:99:1016,0,839 0/0:65,0:65:99:0,178,2085 1/1:0,161:161:99:5155,412,0 0/1:29,24:53:99:629,0,758 1/1:0,79:79:99:2569,208,0 1/1:1,81:82:99:2616,184,0 1/1:1,139:142:99:4218,321,0 0/1:65,71:137:99:1869,0,1723 1/1:0,99:101:99:2949,232,0 0/1:48,38:86:99:1086,0,1229 1/1:1,125:126:99:4404,307,0 1/1:1,61:62:99:2173,144,0 0/1:32,39:71:99:1084,0,862 0/1:45,30:75:99:939,0,1186 1/1:0,36:36:99:1257,102,0 1/1:1,58:59:99:2053,168,0 1/1:0,54:54:99:1783,141,0 0/1:28,39:67:99:1156,0,737 1/1:0,58:58:99:2027,160,0 1/1:0,125:125:99:4060,325,0 0/1:40,41:82:99:1061,0,1105 0/0:80,1:81:99:0,220,2579 0/1:23,26:49:99:661,0,639 0/1:31,32:63:99:909,0,817 0/1:76,59:135:99:1449,0,1958 1/1:0,70:70:99:2269,187,0 0/0:47,0:47:99:0,129,1504 1/1:0,60:62:99:1968,162,0 1/1:1,51:52:99:1666,107,0 0/1:35,31:66:99:907,0,936 17 7163818 . CTG C 4249.81 . 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T C 1030.93 . AC=27;AF=0.321;AN=84;BaseQRankSum=-13.211;DP=851;Dels=0.02;FS=254.079;HRun=3;HaplotypeScore=1.1562;InbreedingCoeff=-0.4668;MQ=58.49;MQ0=0;MQRankSum=2.988;QD=1.86;ReadPosRankSum=-9.644 GT:AD:DP:GQ:PL 0/1:14,3:17:6.18:6,0,453 0/1:8,2:10:5.42:5,0,254 0/1:10,6:16:93.28:93,0,309 0/0:23,9:33:7.64:0,8,740 0/1:19,7:27:59.86:60,0,536 0/0:15,2:17:15.51:0,16,493 0/1:8,6:14:64.06:64,0,268 0/0:7,3:10:1.37:0,1,228 0/1:10,6:16:64.36:64,0,312 0/0:11,2:13:2.85:0,0,333 0/0:17,2:19:48.14:0,48,567 0/1:14,10:24:99:141,0,405 0/1:5,3:8:12.63:13,0,127 0/0:8,0:8:21.06:0,21,255 0/1:31,12:44:29.53:30,0,947 0/1:16,7:23:61.01:61,0,525 0/0:16,2:18:48.13:0,48,561 0/0:13,8:21:8.69:0,9,441 0/0:22,4:27:54.17:0,54,672 0/1:21,12:34:66.34:66,0,587 0/1:14,7:21:47.63:48,0,396 0/0:22,8:30:36.58:0,37,738 0/1:16,5:21:34.59:35,0,488 0/0:10,7:17:11.40:0,11,339 0/1:7,3:10:57.60:58,0,205 0/0:8,3:11:4.38:0,4,263 0/1:12,5:17:98.43:98,0,350 0/1:10,8:18:23.08:23,0,324 0/0:12,3:15:14.42:0,14,384 0/0:13,3:17:13.47:0,13,431 0/1:17,5:23:4.11:4,0,537 0/0:15,10:26:16.40:0,16,423 0/1:15,8:23:4.19:4,0,483 0/1:14,6:20:41.65:42,0,434 0/1:15,7:22:1.25:1,0,446 0/1:17,6:23:25.66:26,0,563 0/1:14,10:25:22.28:22,0,432 0/1:10,7:17:95.22:95,0,221 0/1:18,4:22:0.66:1,0,537 0/1:9,10:19:37.41:37,0,289 0/1:13,4:17:18.04:18,0,408 0/1:17,6:23:77.31:77,0,551 17 7163820 . G C 5179.50 . AC=39;AF=0.464;AN=84;BaseQRankSum=-10.454;DP=922;Dels=0.02;FS=654.638;HRun=3;HaplotypeScore=1.1085;InbreedingCoeff=-0.8680;MQ=58.50;MQ0=0;MQRankSum=1.414;QD=6.02;ReadPosRankSum=-13.279 GT:AD:DP:GQ:PL 0/1:13,3:16:49.48:49,0,406 0/1:7,4:11:49.29:49,0,234 0/1:9,9:18:99:133,0,245 0/1:21,13:35:99:104,0,673 0/1:16,12:28:99:227,0,511 0/1:12,5:17:25.44:25,0,443 0/1:8,10:18:99:141,0,242 0/1:5,6:11:86.79:87,0,180 0/1:10,6:16:99:132,0,294 0/1:10,3:13:30.76:31,0,338 0/0:14,8:22:12.50:0,13,450 0/1:11,15:26:99:185,0,359 0/1:5,3:8:16.51:17,0,132 0/0:8,0:8:24.07:0,24,292 0/1:27,24:51:99:384,0,874 0/1:18,10:28:99:140,0,562 0/0:14,2:16:42.13:0,42,511 0/1:10,13:23:99:225,0,300 0/1:19,11:30:87.51:88,0,615 0/1:19,18:37:99:318,0,522 0/1:14,9:23:99:112,0,437 0/1:20,13:33:99:125,0,664 0/1:12,8:20:99:168,0,410 0/1:9,8:17:99:152,0,298 0/1:7,8:15:99:105,0,223 0/1:6,8:14:46.44:46,0,174 0/1:10,7:17:94.46:94,0,324 0/1:9,7:16:99:161,0,288 0/1:11,4:15:52.63:53,0,334 0/1:14,8:22:40.67:41,0,432 0/1:16,8:24:99:119,0,527 0/1:13,17:30:99:193,0,347 0/1:15,10:25:99:164,0,469 0/1:11,8:19:99:118,0,335 0/1:13,9:22:99:217,0,366 0/1:17,9:26:99:113,0,528 0/1:13,14:28:99:176,0,426 0/1:8,11:19:99:177,0,244 0/1:21,5:26:42.47:42,0,607 0/1:9,15:24:99:272,0,275 0/1:12,7:19:79.27:79,0,413 0/1:14,7:21:99:118,0,463 17 7164138 . A C 84.57 . AC=3;AF=0.036;AN=84;BaseQRankSum=-24.591;DP=2773;Dels=0.00;FS=978.156;HRun=2;HaplotypeScore=2.6653;InbreedingCoeff=-0.0635;MQ=58.90;MQ0=0;MQRankSum=-0.623;QD=0.60;ReadPosRankSum=-16.112 GT:AD:DP:GQ:PL 0/0:24,13:37:22.82:0,23,696 0/0:31,11:42:73.05:0,73,1018 0/0:29,16:45:53.32:0,53,953 0/0:77,53:130:1.58:0,2,2293 0/0:60,53:113:62.13:0,62,1784 0/0:57,28:86:99:0,156,1968 0/0:46,24:70:91.51:0,92,1469 0/0:69,25:94:99:0,165,2278 0/0:36,9:45:53.93:0,54,1120 0/0:31,12:43:20.30:0,20,989 0/0:28,13:41:84.23:0,84,995 0/0:32,9:42:54.99:0,55,995 0/0:40,14:55:60.19:0,60,1313 0/0:30,15:45:55.82:0,56,983 0/0:112,42:155:60.52:0,61,3518 0/0:38,14:52:2.09:0,2,1136 0/0:28,11:39:54.75:0,55,981 0/0:31,15:47:90.24:0,90,1068 0/0:62,25:87:63.24:0,63,1916 0/0:98,40:138:99:0,219,3187 0/0:65,29:94:42.81:0,43,1990 0/0:44,12:56:83.78:0,84,1323 0/0:88,49:138:99:0,100,2615 0/0:40,19:59:99:0,117,1409 0/0:52,28:80:99:0,118,1698 0/0:52,30:82:84.24:0,84,1657 0/0:30,9:39:81.25:0,81,995 0/1:27,20:47:78.62:79,0,764 0/0:23,11:35:60.18:0,60,745 0/1:31,18:49:29.47:29,0,949 0/0:39,7:46:63.07:0,63,1306 0/0:90,29:120:99:0,214,2960 0/0:55,14:70:99:0,147,1767 0/0:34,11:45:1.59:4,0,1074 0/0:28,13:42:1.67:0,2,887 0/0:34,19:53:27.36:0,27,1148 0/0:67,28:95:72.59:0,73,2090 0/0:29,12:41:9.33:0,9,950 0/0:37,11:48:99:0,108,1273 0/1:29,16:45:50.56:51,0,839 0/0:36,13:49:20.90:0,21,1182 0/0:27,6:33:81.24:0,81,969 17 7197633 . A G 185.46 . AC=13;AF=0.433;AN=30;BaseQRankSum=1.102;DP=19;Dels=0.00;FS=6.767;HRun=3;HaplotypeScore=0.1852;InbreedingCoeff=0.3664;MQ=54.80;MQ0=0;MQRankSum=0.286;QD=20.61;ReadPosRankSum=2.245 GT:AD:DP:GQ:PL ./. ./. 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,37 1/1:0,1:1:3.01:39,3,0 ./. ./. 1/1:0,1:1:3.01:41,3,0 ./. 0/0:1,0:1:3.01:0,3,39 ./. ./. ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,38 ./. 0/1:0,1:1:1.76:28,3,0 ./. 0/0:1,0:1:3.01:0,3,42 ./. 0/0:2,0:2:6.02:0,6,71 ./. ./. ./. ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,37 1/1:0,1:1:3.01:33,3,0 1/1:0,1:1:3.01:33,3,0 ./. ./. 1/1:0,2:2:3.01:45,3,0 0/0:2,0:2:6.02:0,6,71 ./. ./. ./. 1/1:0,2:2:3.01:45,3,0 ./. 17 7197794 . C A 594.89 . AC=26;AF=0.867;AN=30;BaseQRankSum=-1.213;DP=30;Dels=0.00;FS=3.278;HRun=0;HaplotypeScore=0.0596;InbreedingCoeff=-0.0501;MQ=42.80;MQ0=1;MQRankSum=-1.882;QD=23.80;ReadPosRankSum=0.878 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:33,3,0 1/1:0,3:3:9.02:103,9,0 ./. ./. ./. ./. ./. ./. ./. ./. 1/1:0,1:1:3.01:32,3,0 ./. ./. ./. 1/1:0,4:4:12.03:130,12,0 ./. 1/1:0,1:1:3.01:37,3,0 1/1:0,1:1:3.01:33,3,0 ./. 0/1:1,1:2:15.67:16,0,32 1/1:0,2:2:3.01:38,3,0 0/1:1,2:3:26.48:26,0,31 ./. ./. ./. ./. ./. ./. ./. 1/1:0,1:1:3.01:38,3,0 ./. 1/1:0,2:2:6.01:67,6,0 1/1:0,2:2:3.01:36,3,0 ./. ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,39 1/1:0,1:1:3.01:33,3,0 ./. 1/1:0,1:1:3.01:38,3,0 17 7218276 . A C 75.50 . AC=8;AF=0.095;AN=84;BaseQRankSum=-6.107;DP=296;Dels=0.00;FS=96.178;HRun=3;HaplotypeScore=0.2207;InbreedingCoeff=-0.1481;MQ=58.39;MQ0=0;MQRankSum=2.116;QD=1.40;ReadPosRankSum=-3.852 GT:AD:DP:GQ:PL 0/0:11,1:12:30.09:0,30,354 0/1:4,1:5:12.62:13,0,134 0/0:3,1:4:6.01:0,6,64 0/0:11,1:12:27.08:0,27,318 0/0:6,1:7:18.05:0,18,203 0/0:2,1:3:6.02:0,6,75 0/0:2,0:2:6.02:0,6,73 0/0:2,0:2:6.02:0,6,66 0/1:5,1:6:21.95:22,0,160 0/0:3,0:3:6.01:0,6,67 0/0:3,1:4:9.03:0,9,105 0/0:11,2:13:30.09:0,30,355 0/0:2,2:4:3.01:0,3,37 0/1:4,2:6:18.39:18,0,129 0/0:19,7:26:50.20:0,50,564 0/0:6,2:8:18.05:0,18,207 0/0:7,0:7:21.06:0,21,252 0/0:4,0:4:9.03:0,9,105 0/0:5,1:6:12.04:0,12,143 0/0:5,1:6:15.03:0,15,165 0/0:8,2:10:21.03:0,21,219 0/0:3,4:7:8.70:0,9,86 0/0:6,2:8:18.05:0,18,209 0/0:2,0:2:6.02:0,6,66 0/0:6,1:7:15.04:0,15,170 0/0:8,1:9:20.72:0,21,212 0/0:3,4:7:6.90:0,7,70 0/0:5,1:6:15.05:0,15,180 0/1:1,5:6:23.61:24,0,31 0/1:4,4:8:8.67:9,0,113 0/1:4,6:10:71.57:72,0,108 0/0:6,1:7:18.05:0,18,216 0/0:9,2:11:26.79:0,27,275 0/0:5,2:7:12.03:0,12,135 0/0:7,3:10:18.02:0,18,196 0/0:8,1:9:24.06:0,24,270 0/1:5,3:8:13.50:13,0,161 0/0:2,0:2:5.99:0,6,57 0/1:4,1:5:17.46:17,0,124 0/0:1,0:1:3.01:0,3,35 0/0:2,2:4:6.02:0,6,72 0/0:9,3:12:24.06:0,24,272 17 7221197 . C T 965.10 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.143;DP=2870;Dels=0.00;FS=3.887;HRun=0;HaplotypeScore=2.0821;InbreedingCoeff=-0.0120;MQ=59.37;MQ0=0;MQRankSum=1.216;QD=15.82;ReadPosRankSum=-0.467 GT:AD:DP:GQ:PL 0/0:62,0:62:99:0,174,2071 0/0:66,0:66:99:0,181,2153 0/0:48,0:48:99:0,141,1624 0/0:97,0:97:99:0,271,3398 0/0:112,0:112:99:0,304,3941 0/0:100,0:100:99:0,283,3604 0/0:72,0:72:99:0,187,2451 0/0:74,1:75:99:0,171,2521 0/0:62,0:63:99:0,171,2019 0/1:26,35:61:99:1011,0,696 0/0:57,1:58:99:0,132,1798 0/0:57,0:57:99:0,162,1936 0/0:47,0:47:99:0,135,1592 0/0:55,0:55:99:0,156,1779 0/0:164,0:167:99:0,436,5236 0/0:69,0:69:99:0,196,2289 0/0:49,0:49:99:0,129,1583 0/0:52,0:52:99:0,147,1744 0/0:88,0:88:99:0,226,2699 0/0:91,0:91:99:0,256,3066 0/0:84,0:84:99:0,223,2612 0/0:41,0:41:99:0,111,1330 0/0:113,0:113:99:0,316,4046 0/0:62,0:62:99:0,169,2208 0/0:66,0:66:99:0,175,2278 0/0:72,0:72:99:0,193,2470 0/0:34,0:34:99:0,99,1154 0/0:67,0:67:99:0,196,2328 0/0:48,0:48:99:0,135,1569 0/0:74,0:74:99:0,202,2388 0/0:50,0:50:99:0,138,1695 0/0:90,0:90:99:0,238,2869 0/0:63,0:63:99:0,184,2138 0/0:49,0:49:99:0,141,1651 0/0:49,2:51:96.64:0,97,1627 0/0:57,1:58:99:0,125,1892 0/0:64,0:65:99:0,184,2175 0/0:60,0:60:99:0,159,1868 0/0:65,0:65:99:0,181,2148 0/0:66,0:66:99:0,184,2170 0/0:59,0:59:99:0,171,2000 0/0:44,0:44:99:0,129,1535 17 7227558 . T C 101.82 . AC=2;AF=0.024;AN=84;BaseQRankSum=-19.570;DP=2948;DS;Dels=0.01;FS=829.340;HRun=3;HaplotypeScore=4.8642;InbreedingCoeff=-0.0255;MQ=58.38;MQ0=0;MQRankSum=1.208;QD=0.61;ReadPosRankSum=-16.480 GT:AD:DP:GQ:PL 0/0:33,12:45:26.28:0,26,1076 0/0:40,12:52:99:0,113,1398 0/0:30,15:45:25.07:0,25,905 0/0:105,52:158:89.46:0,89,3300 0/1:77,47:124:96.65:97,0,2375 0/0:69,23:92:99:0,144,2431 0/0:61,29:90:99:0,175,2095 0/0:70,30:102:99:0,142,2337 0/0:29,13:43:65.55:0,66,974 0/1:25,19:44:67.54:68,0,793 0/0:43,8:51:99:0,104,1480 0/0:37,12:49:82.79:0,83,1310 0/0:31,13:44:92.49:0,92,1097 0/0:39,10:49:99:0,114,1409 0/0:145,29:175:99:0,288,4912 0/0:48,12:61:99:0,138,1678 0/0:40,8:48:99:0,117,1421 0/0:36,17:53:83.62:0,84,1204 0/0:65,20:85:56.53:0,57,1943 0/0:67,25:94:99:0,160,2285 0/0:83,5:89:99:0,211,2958 0/0:52,22:74:99:0,113,1644 0/0:104,44:148:82.22:0,82,3185 0/0:53,16:69:56.07:0,56,1810 0/0:61,18:79:99:0,151,2126 0/0:56,14:70:99:0,119,1939 0/0:31,11:42:56.46:0,56,978 0/0:48,23:71:10.24:0,10,1510 0/0:20,14:35:59.92:0,60,693 0/0:33,15:48:93.25:0,93,1095 0/0:44,4:48:99:0,126,1553 0/0:68,32:100:99:0,199,2430 0/0:48,15:63:99:0,106,1605 0/0:31,9:40:34.96:0,35,991 0/0:45,15:60:85.17:0,85,1486 0/0:36,16:52:77.73:0,78,1235 0/0:65,18:83:99:0,186,2231 0/0:38,21:59:60.10:0,60,1275 0/0:41,18:59:99:0,117,1396 0/0:26,9:35:78.21:0,78,921 0/0:39,16:55:64.11:0,64,1319 0/0:30,17:47:62.61:0,63,1035 17 7240074 . C T 903.46 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.417;DP=3110;Dels=0.00;FS=2.092;HRun=3;HaplotypeScore=1.9262;InbreedingCoeff=-0.0244;MQ=59.31;MQ0=0;MQRankSum=-0.171;QD=11.73;ReadPosRankSum=-0.146 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,105,1250 0/0:43,0:43:99:0,105,1301 0/0:52,0:53:99:0,132,1646 0/0:145,0:145:99:0,364,4477 0/0:128,0:128:99:0,334,4150 0/0:98,0:98:99:0,244,3043 0/0:84,0:84:99:0,199,2461 0/0:76,0:76:99:0,202,2494 0/0:53,0:53:99:0,141,1665 0/0:32,0:34:90.21:0,90,1016 0/0:38,0:38:99:0,105,1196 0/0:55,0:55:99:0,138,1646 0/0:36,0:36:96.25:0,96,1112 0/0:50,0:50:99:0,129,1562 0/0:176,0:178:99:0,409,5057 0/0:45,0:45:99:0,123,1438 0/0:42,0:42:99:0,102,1256 0/0:51,0:51:99:0,129,1547 0/0:113,0:113:99:0,292,3463 0/0:123,0:123:99:0,331,3958 0/0:99,0:100:99:0,238,2818 0/0:83,0:83:99:0,214,2564 0/0:188,0:188:99:0,481,6059 0/0:110,0:110:99:0,271,3384 0/0:123,0:123:99:0,301,3795 0/0:90,0:90:99:0,229,2901 0/1:11,16:27:99:453,0,297 0/0:43,0:43:99:0,123,1458 0/1:29,21:50:99:513,0,810 0/0:45,0:45:99:0,108,1304 0/0:52,0:52:99:0,141,1666 0/0:141,0:142:99:0,334,4097 0/0:85,0:85:99:0,226,2628 0/0:52,0:52:99:0,141,1664 0/0:43,0:43:99:0,114,1369 0/0:46,0:46:99:0,126,1495 0/0:118,0:118:99:0,301,3591 0/0:54,0:54:99:0,135,1655 0/0:47,0:47:99:0,120,1425 0/0:47,0:47:99:0,114,1375 0/0:39,0:39:99:0,108,1273 0/0:41,0:41:96.24:0,96,1153 17 7259948 . G T 1713.33 . AC=24;AF=0.286;AN=84;BaseQRankSum=-18.167;DP=3228;DS;Dels=0.00;FS=2595.720;HRun=2;HaplotypeScore=3.3090;InbreedingCoeff=-0.3954;MQ=58.88;MQ0=0;MQRankSum=-2.256;QD=0.92;ReadPosRankSum=-22.200 GT:AD:DP:GQ:PL 0/0:52,19:71:31.68:0,32,1484 0/1:44,19:63:99:101,0,1229 0/0:60,19:79:88.49:0,88,1614 0/1:77,36:113:35.99:36,0,2364 0/1:75,36:111:80.74:81,0,2215 0/0:55,16:71:19.07:0,19,1815 0/0:49,10:59:50.36:0,50,1587 0/0:60,19:79:70.31:0,70,1913 0/0:36,15:51:49.21:0,49,1053 0/0:34,16:50:12.58:0,13,984 0/1:35,17:52:99:130,0,941 0/0:50,14:64:85.08:0,85,1501 0/1:35,20:55:12.71:13,0,774 0/1:39,21:60:99:123,0,1201 0/1:110,53:163:99:389,0,3055 0/0:44,10:54:48.61:0,49,1193 0/1:42,23:65:49.01:49,0,1128 0/1:41,24:65:70.44:70,0,1006 0/1:91,37:128:99:113,0,2450 0/0:112,39:151:63.30:0,63,3216 0/1:72,25:97:42.06:42,0,2084 0/1:59,31:90:7.63:8,0,1647 0/0:66,27:93:36.59:0,37,2095 0/0:51,15:67:34.62:0,35,1671 0/1:51,22:73:7.29:7,0,1607 0/0:47,21:68:77.29:0,77,1623 0/1:43,22:65:83.87:84,0,1216 0/0:43,18:62:80.10:0,80,1281 0/1:42,12:54:20.29:20,0,1246 0/1:41,16:57:62.79:63,0,1191 0/0:47,13:60:9.50:0,10,1288 0/0:95,39:134:99:0,102,2827 0/1:62,26:89:94.38:94,0,1694 0/1:40,16:56:31.93:32,0,1152 0/1:42,18:60:30.91:31,0,1196 0/0:64,19:84:35.61:0,36,1707 0/1:68,36:104:99:146,0,1642 0/1:43,28:71:27.32:27,0,1161 0/0:46,16:62:25.51:0,26,1364 0/1:36,17:53:37.23:37,0,1042 0/1:41,25:66:42.52:43,0,1205 0/1:41,18:59:99:151,0,1186 17 7287832 . C A 166.76 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.740;DP=442;Dels=0.00;FS=5.663;HRun=0;HaplotypeScore=0.2914;InbreedingCoeff=-0.0368;MQ=58.57;MQ0=0;MQRankSum=1.670;QD=8.34;ReadPosRankSum=-0.035 GT:AD:DP:GQ:PL 0/0:7,0:7:15.04:0,15,174 0/0:12,0:12:36.10:0,36,438 0/0:6,0:6:15.05:0,15,179 0/0:17,0:17:48.12:0,48,578 0/0:16,0:16:42.12:0,42,521 0/1:5,3:8:78.87:79,0,103 0/1:7,5:12:99:150,0,141 0/0:8,0:8:24.08:0,24,311 0/0:11,0:11:30.09:0,30,387 0/0:2,0:2:3.01:0,3,38 0/0:7,0:7:18.06:0,18,238 0/0:7,0:7:21.05:0,21,257 0/0:8,0:8:21.06:0,21,254 0/0:11,0:11:30.09:0,30,381 0/0:38,0:38:93.28:0,93,1167 0/0:16,0:16:42.13:0,42,533 0/0:11,0:11:27.09:0,27,347 0/0:6,0:6:18.06:0,18,222 0/0:11,0:12:27.08:0,27,330 0/0:13,0:13:33.08:0,33,383 0/0:11,0:11:30.07:0,30,337 0/0:10,0:10:27.08:0,27,329 0/0:19,0:20:51.16:0,51,673 0/0:10,0:10:24.08:0,24,330 0/0:13,0:13:36.09:0,36,443 0/0:12,0:12:21.06:0,21,275 0/0:10,0:10:30.08:0,30,348 0/0:12,0:12:33.10:0,33,409 0/0:4,0:4:12.03:0,12,135 0/0:6,0:6:18.05:0,18,204 0/0:4,0:4:12.04:0,12,152 0/0:23,0:23:66.19:0,66,813 0/0:10,0:10:27.06:0,27,324 0/0:8,0:8:21.07:0,21,267 0/0:7,0:7:21.07:0,21,270 0/0:10,0:10:27.08:0,27,341 0/0:9,0:9:21.05:0,21,240 0/0:9,0:9:27.08:0,27,330 0/0:2,0:2:3.01:0,3,38 0/0:11,0:11:30.09:0,30,375 0/0:6,1:7:18.05:0,18,202 0/0:6,0:6:18.04:0,18,209 17 7292107 . G A 22986.41 . 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T C 11844.24 . 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T C 122635.92 . 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G A 9324.32 . 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C T 48553.78 . 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T C 11655.60 . 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C T 1647.32 . 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G A 1508.46 . 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C T 2654.21 . 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C T 15724.81 . 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C T 5410.88 . AC=5;AF=0.060;AN=84;BaseQRankSum=-14.419;DP=3152;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.3857;InbreedingCoeff=-0.0633;MQ=59.08;MQ0=0;MQRankSum=0.766;QD=12.44;ReadPosRankSum=1.851 GT:AD:DP:GQ:PL 0/0:68,0:68:99:0,184,2343 0/0:69,0:69:99:0,184,2339 0/1:35,17:52:99:336,0,1086 0/1:58,53:111:99:1501,0,1835 0/0:93,0:94:99:0,265,3513 0/0:79,0:79:99:0,217,2866 0/0:77,0:77:99:0,220,2917 0/0:95,0:95:99:0,262,3433 0/0:64,0:64:99:0,169,2127 0/0:49,0:49:99:0,135,1694 0/0:62,0:62:99:0,172,2149 0/0:61,0:61:99:0,169,2140 0/0:50,0:50:99:0,150,1825 0/0:70,0:70:99:0,196,2452 0/0:217,1:218:99:0,590,7408 0/0:63,0:63:99:0,181,2223 0/0:61,0:61:99:0,178,2219 0/0:64,0:64:99:0,172,2159 0/0:98,0:98:99:0,271,3400 0/0:92,0:92:99:0,253,3169 0/0:77,0:77:99:0,214,2632 0/0:57,0:57:99:0,150,1904 0/1:65,54:119:99:1424,0,2244 0/1:33,25:58:99:643,0,986 0/1:40,55:95:99:1507,0,1228 0/0:78,0:78:99:0,214,2875 0/0:58,0:58:99:0,159,1955 0/0:69,0:69:99:0,205,2527 0/0:60,0:60:99:0,178,2178 0/0:66,0:66:99:0,187,2356 0/0:70,0:70:99:0,193,2426 0/0:101,0:101:99:0,259,3296 0/0:79,0:79:99:0,214,2672 0/0:55,0:55:99:0,153,1923 0/0:55,0:55:99:0,144,1842 0/0:60,0:60:99:0,172,2147 0/0:82,0:83:99:0,208,2597 0/0:69,0:69:99:0,202,2518 0/0:73,0:73:99:0,205,2576 0/0:60,0:60:99:0,175,2150 0/0:59,0:59:99:0,162,2040 0/0:54,0:54:99:0,150,1903 17 7734114 . A C 2160.08 . AC=2;AF=0.024;AN=84;BaseQRankSum=11.561;DP=2902;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.3020;InbreedingCoeff=-0.0244;MQ=59.20;MQ0=0;MQRankSum=0.238;QD=12.63;ReadPosRankSum=-0.484 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,162,1883 0/0:55,0:55:99:0,147,1779 0/0:45,0:45:99:0,123,1457 0/0:138,0:138:99:0,352,4319 0/0:114,0:114:99:0,313,3864 0/1:49,42:91:99:1191,0,1430 0/1:45,35:80:99:1031,0,1271 0/0:96,0:96:99:0,265,3226 0/0:61,0:61:99:0,162,1965 0/0:56,0:56:99:0,153,1841 0/0:39,0:39:99:0,111,1280 0/0:56,0:56:99:0,144,1750 0/0:31,0:31:87.24:0,87,1020 0/0:63,0:63:99:0,168,2048 0/0:178,1:179:99:0,475,5648 0/0:51,0:51:99:0,150,1759 0/0:51,0:51:99:0,135,1679 0/0:44,0:44:99:0,120,1448 0/0:72,2:74:99:0,196,2305 0/0:102,0:102:99:0,259,3188 0/0:84,0:84:99:0,223,2691 0/0:52,0:52:99:0,141,1711 0/0:140,0:140:99:0,373,4525 0/0:90,0:90:99:0,226,2802 0/0:84,0:85:99:0,232,2844 0/0:84,0:84:99:0,223,2739 0/0:42,0:42:99:0,117,1408 0/0:53,0:53:99:0,156,1856 0/0:45,0:45:99:0,123,1460 0/0:50,0:50:99:0,141,1675 0/0:49,0:49:99:0,135,1656 0/0:80,0:80:99:0,223,2687 0/0:64,0:64:99:0,171,2052 0/0:58,0:58:99:0,165,1990 0/0:59,0:59:99:0,172,2029 0/0:58,0:58:99:0,150,1862 0/0:82,0:82:99:0,229,2720 0/0:59,1:60:99:0,168,1984 0/0:37,0:37:99:0,99,1216 0/0:59,0:59:99:0,172,2034 0/0:44,0:44:99:0,123,1470 0/0:44,0:44:99:0,129,1545 17 7735934 . G A 10846.82 . AC=6;AF=0.071;AN=84;BaseQRankSum=1.319;DP=4904;DS;Dels=0.00;FS=22.936;HRun=0;HaplotypeScore=5.1524;InbreedingCoeff=-0.0769;MQ=59.09;MQ0=2;MQRankSum=0.628;QD=11.59;ReadPosRankSum=2.279 GT:AD:DP:GQ:PL 0/0:90,0:91:99:0,241,2817 0/0:73,0:75:99:0,187,2221 0/0:106,0:107:99:0,289,3445 0/0:217,0:219:99:0,572,6950 0/0:196,0:197:99:0,511,6324 0/0:139,0:141:99:0,373,4560 0/0:131,0:131:99:0,331,4047 0/0:162,0:164:99:0,430,5248 0/0:94,0:94:99:0,244,2913 0/0:89,0:89:99:0,232,2659 0/0:70,0:70:99:0,186,2175 0/0:82,0:84:99:0,211,2478 0/0:77,0:77:99:0,223,2608 0/0:80,0:81:99:0,214,2465 0/0:216,2:220:99:0,509,6281 0/0:92,0:94:99:0,244,2763 0/0:96,0:96:99:0,256,3007 0/0:79,0:80:99:0,217,2556 0/1:92,68:163:99:1617,0,2569 0/1:98,67:167:99:1691,0,2679 0/0:137,1:139:99:0,353,4629 0/0:103,2:107:99:0,236,3376 0/1:103,96:199:99:2636,0,2706 0/1:76,51:129:99:1479,0,2135 0/0:149,0:152:99:0,406,5012 0/1:75,54:133:99:1446,0,2270 0/0:81,0:82:99:0,217,2554 0/0:93,0:94:99:0,250,2978 0/0:79,0:80:99:0,217,2527 0/0:73,0:75:99:0,192,2240 0/0:81,0:83:99:0,220,2641 0/0:157,0:160:99:0,421,5014 0/1:74,71:145:99:1978,0,1837 0/0:101,0:102:99:0,280,3242 0/0:81,0:82:99:0,217,2508 0/0:62,0:62:99:0,174,2063 0/0:132,0:132:99:0,361,4208 0/0:100,0:100:99:0,253,2953 0/0:112,0:112:99:0,280,3286 0/0:113,0:113:99:0,292,3432 0/0:76,0:77:99:0,202,2384 0/0:105,1:106:99:0,244,3142 17 7736242 . C G 6185.28 . 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TACCACC T 286.87 . AC=5;AF=0.064;AN=78;BaseQRankSum=2.845;DP=658;FS=3.187;HRun=0;HaplotypeScore=92.2258;InbreedingCoeff=0.0681;MQ=52.25;MQ0=7;MQRankSum=0.660;QD=2.96;ReadPosRankSum=0.126 GT:AD:DP:GQ:PL 0/0:11,0:10:1.83:0,0,0 0/0:6,0:6:2.97:0,3,20 0/0:12,0:12:4.42:0,4,41 0/0:36,0:36:9.50:0,10,192 0/0:26,0:27:18.53:0,19,366 0/0:17,0:15:4.39:0,4,23 0/0:17,0:16:1.69:0,0,0 0/0:21,0:19:0.47:0,0,1 0/0:14,0:14:9.41:0,9,128 0/0:15,0:15:0:0,0,0 0/0:9,0:9:3.01:0,3,79 ./.:.:6:.:0,0,0 0/0:10,0:9:3.01:0,3,86 0/0:10,0:13:9.49:0,9,150 0/0:32,0:33:7.22:0,7,94 0/1:14,0:16:32.52:33,0,87 0/0:10,0:11:9.03:0,9,214 0/0:11,0:10:9.03:0,9,194 0/1:12,3:14:14.06:124,0,14 0/1:22,4:26:17.91:162,0,18 0/0:15,0:15:11.25:0,11,226 0/0:21,0:20:18.04:0,18,313 0/0:37,0:40:14.54:0,15,299 0/0:14,0:14:2.84:0,3,45 0/0:15,0:12:3.90:0,4,51 0/1:9,1:9:42.12:55,0,42 0/0:14,0:14:6.02:0,6,78 ./.:.:7:.:0,0,0 ./.:.:3:.:0,0,0 0/0:19,0:18:3.01:0,3,86 0/0:13,0:12:9.03:0,9,175 0/0:18,0:19:9.03:0,9,255 0/0:20,0:19:3.54:0,4,99 0/0:10,0:9:6.02:0,6,131 0/0:12,0:12:5.95:0,6,104 0/0:12,0:12:6.95:0,7,102 0/0:19,0:18:4.37:0,4,47 0/0:15,0:15:8.82:0,9,148 0/0:7,0:7:1.41:0,1,3 0/1:14,0:14:1.86:1,0,0 0/0:10,0:9:3.01:0,3,92 0/0:17,0:17:6.21:0,6,124 17 7750200 . C T 7.02 . 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T C 5810.54 . AC=21;AF=0.250;AN=84;BaseQRankSum=4.410;DP=838;Dels=0.00;FS=34.134;HRun=1;HaplotypeScore=0.6829;InbreedingCoeff=0.1742;MQ=58.08;MQ0=0;MQRankSum=1.407;QD=18.10;ReadPosRankSum=-1.668 GT:AD:DP:GQ:PL 1/1:0,13:13:36.10:432,36,0 0/1:10,12:22:99:389,0,253 0/0:9,0:9:21.06:0,21,256 0/0:33,0:33:96.28:0,96,1159 0/0:31,0:31:93.28:0,93,1144 1/1:0,18:18:54.16:695,54,0 0/1:4,6:10:99:196,0,119 0/1:11,7:18:99:211,0,324 0/0:18,0:18:54.14:0,54,645 0/0:18,0:18:54.16:0,54,651 0/0:18,0:18:54.16:0,54,652 0/0:12,0:12:33.09:0,33,396 0/1:9,3:12:83.37:83,0,251 0/1:6,7:13:99:109,0,190 0/1:24,24:48:99:743,0,652 0/0:22,0:22:66.21:0,66,812 0/1:13,8:21:99:177,0,384 0/0:17,0:17:48.15:0,48,598 0/1:11,6:17:99:175,0,288 0/1:14,14:28:99:410,0,425 0/0:37,0:37:99:0,108,1302 0/0:20,0:21:60.19:0,60,738 0/0:40,1:41:90.65:0,91,1384 0/1:5,7:12:99:200,0,126 0/0:26,0:26:78.24:0,78,966 0/1:10,10:20:99:301,0,252 0/0:13,0:13:39.12:0,39,484 0/0:15,0:15:45.13:0,45,537 0/0:14,0:14:42.13:0,42,512 0/0:17,0:17:48.15:0,48,598 0/0:18,0:18:54.17:0,54,663 0/0:21,0:21:54.16:0,54,662 0/1:12,8:20:99:244,0,351 0/0:19,0:19:51.14:0,51,604 0/0:13,0:13:36.08:0,36,419 0/0:19,0:19:54.17:0,54,664 0/0:28,0:28:81.24:0,81,966 0/0:16,0:16:42.13:0,42,515 0/0:21,0:21:63.16:0,63,751 1/1:0,15:15:45.14:555,45,0 0/1:7,5:12:99:133,0,230 1/1:0,21:22:63.18:759,63,0 17 7761512 . C A 11825.33 . 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C T 5481.45 . 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A C 7584.29 . AC=3;AF=0.036;AN=84;BaseQRankSum=-5.028;DP=5958;DS;Dels=0.00;FS=2.816;HRun=0;HaplotypeScore=2.5205;InbreedingCoeff=-0.0370;MQ=59.41;MQ0=0;MQRankSum=-0.263;QD=15.05;ReadPosRankSum=1.352 GT:AD:DP:GQ:PL 0/0:116,0:116:99:0,331,3979 0/0:113,0:113:99:0,322,3840 0/0:69,0:69:99:0,199,2356 0/0:237,0:237:99:0,626,7642 0/0:209,0:209:99:0,557,6813 0/0:219,0:219:99:0,575,7229 0/0:166,0:166:99:0,439,5472 0/1:82,66:148:99:2025,0,2262 0/0:127,0:127:99:0,349,4237 0/0:106,0:107:99:0,292,3506 0/0:108,0:108:99:0,304,3631 0/0:92,0:92:99:0,265,3157 0/0:97,0:98:99:0,268,3276 0/0:119,0:119:99:0,346,4160 0/0:250,0:250:99:0,671,8175 0/1:55,55:110:99:1546,0,1527 0/0:126,0:126:99:0,343,4176 0/0:106,0:106:99:0,298,3608 0/0:157,1:158:99:0,433,5261 0/1:101,145:246:99:4013,0,2652 0/0:195,0:196:99:0,521,6446 0/0:132,0:132:99:0,364,4422 0/0:250,0:250:99:0,686,8404 0/0:156,1:157:99:0,415,5108 0/0:178,0:178:99:0,451,5687 0/0:143,0:143:99:0,379,4670 0/0:87,0:87:99:0,238,2862 0/0:105,0:105:99:0,301,3681 0/0:102,0:103:99:0,286,3442 0/0:107,0:107:99:0,301,3609 0/0:92,0:92:99:0,262,3156 0/0:248,0:248:99:0,644,7965 0/0:163,0:163:99:0,448,5500 0/0:125,1:126:99:0,352,4303 0/0:96,0:96:99:0,271,3255 0/0:101,0:101:99:0,268,3265 0/0:206,0:206:99:0,569,6933 0/0:112,0:112:99:0,310,3737 0/0:114,0:114:99:0,316,3830 0/0:121,0:121:99:0,352,4286 0/0:84,0:84:99:0,238,2850 0/0:113,0:113:99:0,322,3958 17 7849087 . C G 42076.43 . 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G C 235.65 . AC=2;AF=0.026;AN=78;BaseQRankSum=-0.224;DP=219;Dels=0.00;FS=4.512;HRun=1;HaplotypeScore=0.2584;InbreedingCoeff=-0.0695;MQ=58.26;MQ0=0;MQRankSum=1.012;QD=11.22;ReadPosRankSum=-0.681 GT:AD:DP:GQ:PL 0/0:6,0:6:18.04:0,18,192 0/0:1,0:1:3.01:0,3,33 0/0:1,0:1:3:0,3,28 0/0:6,0:6:18.05:0,18,205 0/0:7,0:7:21.06:0,21,247 0/0:3,0:3:9.01:0,9,88 0/0:5,0:5:9.02:0,9,116 0/0:3,0:3:9.03:0,9,107 0/0:3,0:3:9.03:0,9,105 0/0:4,0:4:12.04:0,12,147 0/0:6,0:6:18.03:0,18,193 0/0:3,0:3:9.02:0,9,95 0/0:6,0:6:15.04:0,15,179 0/0:6,0:6:15.04:0,15,178 0/0:10,0:10:24.07:0,24,287 0/0:2,0:2:3.01:0,3,39 ./. 0/0:5,0:5:15.03:0,15,158 0/1:7,7:14:99:171,0,160 0/1:2,5:7:57.50:125,0,58 0/0:11,0:11:30.08:0,30,338 0/0:2,0:2:3.01:0,3,35 0/0:8,0:8:21.06:0,21,252 ./. 0/0:4,0:4:12.04:0,12,144 0/0:7,0:7:21.06:0,21,251 0/0:6,0:6:15.03:0,15,160 0/0:8,0:8:24.07:0,24,281 0/0:6,0:6:18.05:0,18,211 0/0:9,0:9:18.04:0,18,212 0/0:6,0:6:15.05:0,15,185 0/0:11,0:11:27.08:0,27,333 0/0:4,0:4:12.04:0,12,143 ./. 0/0:5,0:5:12.04:0,12,154 0/0:4,0:4:12.04:0,12,147 0/0:11,0:11:27.06:0,27,304 0/0:6,0:6:18.05:0,18,209 0/0:4,0:4:12.03:0,12,140 0/0:5,0:5:12.04:0,12,148 0/0:2,0:2:6.02:0,6,75 0/0:2,0:2:3.01:0,3,39 17 7919833 . G A 55.26 . AC=2;AF=0.026;AN=78;BaseQRankSum=-0.785;DP=160;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3165;InbreedingCoeff=-0.0903;MQ=58.66;MQ0=0;MQRankSum=0.246;QD=7.89;ReadPosRankSum=0.186 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,173 0/0:5,0:5:12.04:0,12,142 ./. 0/0:8,0:8:24.06:0,24,294 0/0:8,0:8:21.07:0,21,280 0/1:2,2:4:62.67:63,0,63 0/1:1,2:3:30.99:53,0,31 0/0:4,0:4:9.03:0,9,111 0/0:4,0:4:12.02:0,12,131 0/0:1,0:1:3:0,3,26 0/0:5,0:5:15.04:0,15,173 0/0:2,0:2:6.01:0,6,67 0/0:3,0:3:9.03:0,9,113 0/0:3,0:3:6.02:0,6,72 0/0:6,0:6:9.03:0,9,113 0/0:2,0:2:3.01:0,3,35 0/0:2,0:2:6.02:0,6,76 ./. 0/0:7,0:7:18.06:0,18,220 0/0:6,0:6:18.04:0,18,194 0/0:8,0:8:24.07:0,24,290 0/0:4,0:4:9.03:0,9,112 0/0:6,0:6:18.05:0,18,227 0/0:1,0:1:3.01:0,3,32 0/0:4,0:4:12.04:0,12,155 0/0:4,0:4:12.04:0,12,157 0/0:5,0:5:12:0,12,123 0/0:4,0:4:12.04:0,12,152 0/0:3,0:3:6.01:0,6,66 0/0:5,0:5:12.04:0,12,152 0/0:3,0:3:6.01:0,6,67 0/0:2,0:2:6.02:0,6,73 0/0:2,0:2:6:0,6,56 0/0:2,0:4:3.01:0,3,39 0/0:2,0:2:6.02:0,6,76 0/0:5,0:5:12.03:0,12,144 0/0:6,0:6:15.04:0,15,178 0/0:4,0:4:12.04:0,12,150 0/0:2,0:2:6.02:0,6,66 0/0:2,0:2:6.01:0,6,66 0/0:4,0:4:12.03:0,12,138 ./. 17 7980445 . G A 499.32 . 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C T 224.01 . AC=5;AF=0.060;AN=84;BaseQRankSum=-3.056;DP=291;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.2813;InbreedingCoeff=0.0772;MQ=58.15;MQ0=0;MQRankSum=1.217;QD=10.18;ReadPosRankSum=1.178 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,76 0/0:4,0:4:9.03:0,9,114 0/0:5,0:5:15.04:0,15,174 0/0:21,0:21:54.14:0,54,666 0/0:18,0:18:51.16:0,51,667 0/0:15,0:15:33.11:0,33,445 0/0:6,0:6:18.05:0,18,227 0/1:3,3:6:91.12:91,0,105 0/0:8,0:8:24.07:0,24,283 0/0:7,0:7:21.04:0,21,248 0/0:5,0:5:15.05:0,15,184 0/0:3,0:3:9.03:0,9,111 0/0:3,0:3:6.02:0,6,67 0/0:9,0:9:21.03:0,21,240 0/0:11,0:11:33.09:0,33,394 0/0:6,0:6:18.05:0,18,210 0/0:4,0:4:12.04:0,12,152 0/0:5,0:5:12.02:0,12,140 0/0:7,0:7:15.04:0,15,177 0/0:14,0:14:36.11:0,36,439 0/0:10,0:10:24.08:0,24,302 0/0:8,0:8:21.07:0,21,259 0/0:16,0:16:48.13:0,48,596 0/0:13,0:13:39.12:0,39,488 0/0:7,0:7:21.07:0,21,277 0/0:5,0:5:12.03:0,12,152 0/0:4,0:4:12.03:0,12,140 0/0:5,0:5:12.04:0,12,156 0/0:3,0:3:9.03:0,9,111 0/0:6,0:6:12.04:0,12,150 0/0:6,0:6:9.03:0,9,115 0/0:14,0:14:36.11:0,36,466 0/0:3,0:3:9.02:0,9,104 0/1:1,1:2:24.57:25,0,31 0/0:2,0:2:6.02:0,6,72 0/0:7,0:7:15.05:0,15,189 0/1:1,2:3:1.76:36,3,0 0/0:5,0:5:15.05:0,15,181 0/1:3,4:7:86.94:120,0,87 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,39 0/1:2,2:4:29.56:50,0,30 17 8053344 . G A 2359.91 . 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C T 61634.91 . 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G A 1968.92 . 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T A 51651.17 . 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G C 921.72 . 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G A 606.08 . 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G A 1584.94 . AC=3;AF=0.036;AN=84;BaseQRankSum=-8.133;DP=2288;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.1289;InbreedingCoeff=-0.0370;MQ=58.25;MQ0=0;MQRankSum=0.577;QD=12.58;ReadPosRankSum=-0.146 GT:AD:DP:GQ:PL 0/1:21,28:49:99:854,0,549 0/1:22,15:37:99:405,0,655 0/0:46,0:46:99:0,135,1641 0/0:84,0:84:99:0,244,3223 0/0:59,0:59:99:0,172,2238 0/0:64,0:64:99:0,187,2500 0/0:61,0:61:99:0,175,2384 0/0:49,0:49:99:0,123,1659 0/0:67,0:67:99:0,196,2448 0/0:47,0:47:99:0,138,1756 0/0:40,0:40:99:0,117,1439 0/0:44,0:44:99:0,129,1596 0/0:41,0:41:99:0,120,1511 0/0:34,0:34:99:0,102,1247 0/0:186,0:186:99:0,530,6641 0/0:42,0:42:99:0,123,1558 0/0:49,0:49:99:0,144,1801 0/0:54,0:54:99:0,159,2013 0/0:64,0:64:99:0,187,2276 0/0:68,0:68:99:0,190,2383 0/0:60,0:61:99:0,166,2082 0/0:50,0:50:99:0,144,1801 0/0:96,0:96:99:0,280,3771 0/0:49,0:49:99:0,132,1762 0/0:46,0:46:99:0,126,1699 0/0:40,0:40:99:0,114,1513 0/0:40,0:40:99:0,120,1494 0/0:57,0:57:99:0,156,1984 0/0:63,0:63:99:0,184,2301 0/0:43,0:43:99:0,126,1602 0/0:43,0:43:99:0,129,1612 0/0:54,0:54:99:0,150,1933 0/0:32,0:32:96.29:0,96,1176 0/0:54,0:54:99:0,156,1936 0/0:54,0:54:99:0,159,2007 0/0:54,0:54:99:0,150,1913 0/0:45,0:45:99:0,123,1516 0/1:25,15:40:99:402,0,771 0/0:51,0:51:99:0,150,1854 0/0:40,0:40:99:0,111,1369 0/0:43,0:43:99:0,120,1511 0/0:48,0:48:99:0,138,1714 17 8076903 . C T 805.24 . 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T C 108426.20 . 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C T 1778.46 . 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C G 1698.24 . 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G A 2612.20 . 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T C 8941.31 . 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A C 463.55 . 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A G 1992.85 . AC=3;AF=0.036;AN=84;BaseQRankSum=6.275;DP=2102;Dels=0.00;FS=0.443;HRun=1;HaplotypeScore=1.3909;InbreedingCoeff=-0.0370;MQ=58.72;MQ0=0;MQRankSum=-0.715;QD=11.79;ReadPosRankSum=-0.349 GT:AD:DP:GQ:PL 0/0:35,0:35:90.28:0,90,1132 0/0:39,0:39:99:0,117,1443 0/0:31,0:31:87.27:0,87,1089 0/0:85,1:86:99:0,229,2924 0/0:82,0:82:99:0,220,2854 0/0:73,0:73:99:0,196,2577 0/0:52,0:52:99:0,150,1923 0/0:65,0:65:99:0,166,2131 0/0:37,0:37:99:0,105,1312 0/0:25,0:25:75.24:0,75,929 0/0:26,0:26:78.24:0,78,957 0/0:45,0:45:99:0,123,1534 0/0:35,0:35:96.30:0,96,1210 0/0:32,0:32:93.28:0,93,1149 0/0:131,0:131:99:0,346,4368 0/0:38,0:38:99:0,114,1385 0/0:32,0:32:93.29:0,93,1162 0/0:38,0:38:99:0,111,1363 0/0:81,0:81:99:0,220,2745 0/0:79,0:79:99:0,217,2698 0/1:47,29:76:99:838,0,1356 0/1:22,17:39:99:474,0,691 0/0:85,0:85:99:0,223,2879 0/0:50,0:50:99:0,141,1781 0/1:28,26:54:99:757,0,840 0/0:58,0:59:99:0,153,1967 0/0:34,0:34:96.29:0,96,1174 0/0:55,0:55:99:0,153,1893 0/0:32,1:34:93.28:0,93,1127 0/0:40,0:40:99:0,108,1345 0/0:33,0:33:99:0,99,1225 0/0:71,0:71:99:0,196,2424 0/0:48,0:49:99:0,123,1553 0/0:34,0:34:99:0,99,1206 0/0:32,0:32:93.29:0,93,1141 0/0:39,0:39:99:0,114,1416 0/0:73,0:73:99:0,205,2548 0/0:44,0:44:99:0,126,1576 0/0:39,0:39:99:0,105,1304 0/0:39,0:39:99:0,108,1366 0/0:31,0:31:81.25:0,81,1006 0/0:30,0:30:84.25:0,84,1040 17 8416901 . C T 89645.15 . AC=40;AF=0.476;AN=84;BaseQRankSum=-31.640;DP=5478;DS;Dels=0.00;FS=1.385;HRun=2;HaplotypeScore=2.0090;InbreedingCoeff=-0.1455;MQ=59.38;MQ0=0;MQRankSum=-1.675;QD=21.18;ReadPosRankSum=-0.155 GT:AD:DP:GQ:PL 0/1:45,51:96:99:1512,0,1330 0/1:49,50:99:99:1447,0,1434 0/0:91,0:91:99:0,268,3358 0/0:228,0:228:99:0,656,8713 0/1:100,111:211:99:3381,0,3341 0/1:107,110:217:99:3428,0,3607 0/1:93,99:192:99:3059,0,3074 0/1:106,81:187:99:2428,0,3434 0/1:41,48:89:99:1450,0,1218 0/1:40,44:84:99:1285,0,1211 0/0:90,1:92:99:0,234,3280 0/1:46,53:99:99:1608,0,1390 0/1:36,37:73:99:1063,0,1074 0/0:85,0:85:99:0,250,3068 1/1:0,250:250:99:8531,716,0 1/1:0,83:84:99:2943,247,0 0/1:45,53:98:99:1532,0,1312 1/1:0,96:96:99:3364,277,0 1/1:0,171:171:99:5879,478,0 1/1:0,190:190:99:6604,542,0 0/0:154,0:154:99:0,442,5553 0/0:107,0:107:99:0,313,3889 0/1:125,125:250:99:3812,0,4216 1/1:1,193:194:99:7002,527,0 0/1:104,112:216:99:3319,0,3434 1/1:1,183:184:99:6506,493,0 0/1:37,36:73:99:1063,0,1143 0/1:45,39:84:99:1153,0,1363 0/1:38,47:85:99:1439,0,1114 0/0:94,0:94:99:0,262,3223 0/1:48,30:78:99:840,0,1571 0/0:188,0:188:99:0,548,6806 0/1:47,45:92:99:1324,0,1414 0/1:45,40:85:99:1118,0,1382 0/1:39,43:83:99:1241,0,1103 0/0:102,0:102:99:0,295,3668 0/1:82,92:175:99:2700,0,2501 0/1:39,63:102:99:1888,0,1110 1/1:0,108:108:99:3823,316,0 0/1:48,55:103:99:1659,0,1408 0/1:43,42:85:99:1241,0,1286 0/0:104,0:104:99:0,307,3760 17 8725214 . A AG 14990.71 . 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G GC 24.42 . 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G A 112568.25 . 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G A 72509.42 . 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A G 4019.38 . 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C T 8409.75 . 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T C 1594.87 . 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G A 36889.35 . 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T C 3017.37 . 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C T 1407.79 . 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C T 6312.06 . 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T C 5453.43 . 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G A 2958.92 . 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G A 6220.01 . 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T G 92778.25 . 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T C 4575.63 . 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T C 92387.44 . 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G T 98458.18 . 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G A 4826.86 . AC=2;AF=0.024;AN=84;BaseQRankSum=-18.612;DP=4446;DS;Dels=0.00;FS=24.839;HRun=0;HaplotypeScore=2.6454;InbreedingCoeff=-0.0244;MQ=59.36;MQ0=0;MQRankSum=1.851;QD=13.48;ReadPosRankSum=1.654 GT:AD:DP:GQ:PL 0/0:92,0:93:99:0,256,3223 0/0:112,0:112:99:0,316,3941 0/0:103,0:103:99:0,289,3598 0/0:175,1:178:99:0,473,6656 0/0:180,0:180:99:0,521,6939 0/1:97,105:204:99:2484,0,2943 0/1:61,92:154:99:2343,0,1836 0/0:164,0:164:99:0,460,5976 0/0:61,0:61:99:0,172,2125 0/0:65,0:65:99:0,190,2370 0/0:72,0:72:99:0,208,2589 0/0:89,0:89:99:0,244,3073 0/0:76,0:76:99:0,223,2768 0/0:71,0:71:99:0,211,2593 0/0:245,0:247:99:0,677,8486 0/0:76,0:76:99:0,214,2649 0/0:69,0:69:99:0,193,2418 0/0:68,0:68:99:0,199,2474 0/0:108,0:108:99:0,286,3541 0/0:95,0:95:99:0,256,3217 0/0:97,0:97:99:0,262,3304 0/0:80,0:80:99:0,232,2883 0/0:172,0:173:99:0,503,6676 0/0:143,0:144:99:0,391,5067 0/0:160,0:161:99:0,457,6047 0/0:138,0:138:99:0,397,5206 0/0:84,0:85:99:0,244,3039 0/0:84,0:84:99:0,235,2873 0/0:75,0:75:99:0,220,2721 0/0:80,0:80:99:0,229,2883 0/0:68,0:68:99:0,193,2447 0/0:115,0:115:99:0,313,3938 0/0:68,0:68:99:0,181,2273 0/0:87,0:87:99:0,241,3044 0/0:75,1:76:99:0,217,2693 0/0:75,0:76:99:0,217,2673 0/0:98,0:98:99:0,286,3531 0/0:75,1:76:99:0,192,2595 0/0:89,0:89:99:0,256,3211 0/0:95,0:95:99:0,274,3420 0/0:85,0:85:99:0,226,2888 0/0:111,0:111:99:0,316,3984 17 10599089 . T C 149.09 . AC=3;AF=0.036;AN=84;BaseQRankSum=-21.027;DP=3183;Dels=0.00;FS=1839.934;HRun=2;HaplotypeScore=1.5699;InbreedingCoeff=-0.0472;MQ=59.15;MQ0=0;MQRankSum=0.194;QD=0.70;ReadPosRankSum=-18.828 GT:AD:DP:GQ:PL 0/0:39,30:69:13.57:0,14,1205 0/0:36,15:51:99:0,105,1198 0/0:33,16:49:6.98:0,7,914 0/0:80,56:136:44.81:0,45,2631 0/0:55,49:104:91.74:0,92,1755 0/0:64,30:94:99:0,114,2032 0/0:65,31:96:87.94:0,88,2125 0/0:64,30:94:75.09:0,75,2007 0/0:37,18:55:41.56:0,42,1168 0/1:33,18:51:49.61:50,0,1043 0/0:46,26:72:22.89:0,23,1457 0/0:42,24:67:74.28:0,74,1302 0/0:46,28:74:61.11:0,61,1309 0/0:38,17:55:2.55:1,0,1190 0/0:132,80:212:99:0,134,4112 0/0:25,12:37:49.57:0,50,858 0/0:51,24:75:99:0,147,1740 0/0:42,22:64:50.45:0,50,1407 0/1:52,29:81:83.26:83,0,1382 0/0:80,33:113:99:0,151,2471 0/1:53,28:82:91.27:91,0,1613 0/0:31,13:44:30.28:0,30,986 0/0:62,44:106:99:0,100,2054 0/0:49,27:76:99:0,99,1461 0/0:62,45:107:99:0,148,2118 0/0:54,25:79:99:0,117,1681 0/0:36,18:54:19.70:0,20,1109 0/0:53,16:69:88.39:0,88,1633 0/0:45,15:60:70.32:0,70,1467 0/0:42,22:64:99:0,117,1402 0/0:36,18:54:47.74:0,48,1191 0/0:70,29:99:70.52:0,71,2149 0/0:42,32:74:35.68:0,36,1367 0/0:38,18:56:99:0,107,1223 0/0:42,21:63:91.48:0,91,1332 0/0:50,30:80:89.01:0,89,1611 0/0:49,16:65:53.46:0,53,1599 0/0:42,22:64:92.27:0,92,1358 0/0:45,14:59:80.09:0,80,1498 0/0:33,12:46:92.31:0,92,1100 0/0:50,20:70:99:0,116,1653 0/0:44,19:63:68.87:0,69,1336 17 11511457 . C T 93410.11 . AC=33;AF=0.393;AN=84;BaseQRankSum=6.625;DP=8641;DS;Dels=0.00;FS=56.039;HRun=0;HaplotypeScore=5.5877;InbreedingCoeff=0.2513;MQ=59.39;MQ0=0;MQRankSum=-2.671;QD=19.60;ReadPosRankSum=2.053 GT:AD:DP:GQ:PL 0/0:223,0:223:99:0,596,7038 0/1:110,85:196:99:2401,0,2967 1/1:1,136:137:99:4396,352,0 0/1:132,118:250:99:3486,0,3881 0/1:116,132:248:99:3736,0,3397 0/1:133,117:250:99:3406,0,3895 1/1:1,247:248:99:8635,668,0 0/0:248,0:248:99:0,665,8444 0/0:202,0:202:99:0,539,6477 0/1:91,67:159:99:1833,0,2540 0/0:177,0:177:99:0,463,5669 0/1:96,72:169:99:2016,0,2501 0/1:99,74:174:99:2047,0,2674 0/0:204,1:205:99:0,511,6563 0/1:147,102:250:99:2402,0,3896 1/1:0,121:121:99:4197,343,0 0/0:193,0:193:99:0,535,6346 0/0:190,1:191:99:0,477,6145 0/0:249,0:250:99:0,659,7911 0/0:250,0:250:99:0,671,8058 1/1:0,250:250:99:8138,650,0 1/1:0,195:196:99:6358,515,0 0/1:132,117:249:99:3413,0,3846 0/0:249,0:250:99:0,656,8320 0/0:247,0:247:99:0,638,8150 0/0:243,6:250:99:0,459,7889 1/1:0,130:131:99:4322,349,0 1/1:0,187:187:99:6003,478,0 0/1:100,65:165:99:1677,0,2660 0/0:171,0:172:99:0,460,5582 0/0:167,0:167:99:0,457,5561 0/1:159,89:250:99:2432,0,4488 0/0:227,0:227:99:0,614,7282 0/0:181,0:181:99:0,502,5983 0/0:206,1:207:99:0,525,6543 0/0:236,0:236:99:0,635,7668 1/1:0,245:246:99:8425,686,0 0/1:110,89:199:99:2422,0,3000 0/1:95,69:166:99:1931,0,2602 0/1:112,92:205:99:2623,0,3025 0/1:85,76:161:99:2079,0,2208 1/1:0,157:157:99:5031,400,0 17 11511480 . G A 9098.61 . AC=3;AF=0.036;AN=84;BaseQRankSum=-0.313;DP=8462;DS;Dels=0.00;FS=0.411;HRun=0;HaplotypeScore=4.1231;InbreedingCoeff=-0.0370;MQ=59.42;MQ0=0;MQRankSum=0.255;QD=15.69;ReadPosRankSum=1.601 GT:AD:DP:GQ:PL 0/1:94,105:199:99:2944,0,2330 0/1:78,109:187:99:3062,0,2019 0/0:145,0:145:99:0,409,4666 0/0:228,1:229:99:0,650,8064 0/0:207,0:207:99:0,575,7228 0/0:229,0:229:99:0,635,7974 0/0:250,0:250:99:0,674,8445 0/0:242,0:244:99:0,647,8184 0/0:208,0:209:99:0,560,6572 0/0:152,0:153:99:0,424,4834 0/0:181,0:181:99:0,499,5818 0/0:186,0:188:99:0,517,6035 0/0:166,0:166:99:0,478,5540 0/0:196,0:196:99:0,548,6374 0/0:249,0:250:99:0,710,8312 0/0:135,0:135:99:0,379,4396 0/0:212,0:212:99:0,578,6738 0/0:192,0:192:99:0,541,6267 0/0:224,0:224:99:0,605,6987 0/0:249,0:249:99:0,689,7909 0/0:239,0:241:99:0,629,7218 0/0:224,0:224:99:0,602,6977 0/0:245,2:248:99:0,635,8395 0/0:223,0:223:99:0,635,7948 0/0:222,1:223:99:0,590,7706 0/0:226,0:227:99:0,611,7728 0/0:125,0:126:99:0,352,3976 0/0:194,0:194:99:0,523,6122 0/0:156,0:156:99:0,436,5068 0/0:181,0:181:99:0,493,5656 0/0:172,0:172:99:0,478,5518 0/0:224,0:224:99:0,617,7186 0/0:223,0:223:99:0,605,7024 0/0:176,0:177:99:0,478,5542 0/0:197,0:197:99:0,548,6379 0/0:228,0:229:99:0,623,7177 0/0:232,0:233:99:0,656,7357 0/1:80,112:194:99:3093,0,2009 0/0:181,0:182:99:0,484,5656 0/0:226,0:228:99:0,608,7024 0/0:166,0:166:99:0,457,5260 0/0:148,1:149:99:0,412,4767 17 11513806 . T C 35.91 . AC=2;AF=0.024;AN=84;BaseQRankSum=-11.333;DP=1933;Dels=0.00;FS=157.238;HRun=1;HaplotypeScore=1.9795;InbreedingCoeff=-0.0246;MQ=58.51;MQ0=0;MQRankSum=1.839;QD=0.45;ReadPosRankSum=-10.894 GT:AD:DP:GQ:PL 0/0:36,4:40:78.24:0,78,966 0/0:38,5:43:86.94:0,87,1042 0/0:32,5:37:78.24:0,78,964 0/0:58,18:76:95.85:0,96,1809 0/0:69,7:76:99:0,135,1737 0/0:54,3:57:99:0,114,1473 0/0:49,2:51:72.59:0,73,1148 0/0:55,0:55:99:0,117,1465 0/0:26,4:30:30.49:0,30,634 0/0:25,4:29:18.86:0,19,776 0/0:29,2:31:63.19:0,63,756 0/0:42,6:48:72.39:0,72,1100 0/1:23,5:28:32.55:33,0,568 0/0:31,7:38:30.50:0,30,731 0/0:102,11:114:99:0,193,2994 0/0:28,2:30:63.19:0,63,769 0/0:28,5:33:66.21:0,66,814 0/0:32,1:33:74.26:0,74,899 0/1:39,13:52:65.64:66,0,1163 0/0:69,1:70:99:0,147,1868 0/0:59,7:66:99:0,111,1732 0/0:42,2:44:90.26:0,90,1072 0/0:69,11:80:99:0,115,1716 0/0:32,3:36:28.97:0,29,903 0/0:58,1:59:99:0,126,1610 0/0:42,1:43:96.30:0,96,1206 0/0:34,3:37:72.22:0,72,886 0/0:34,3:37:62.70:0,63,1094 0/0:27,7:34:52.60:0,53,937 0/0:27,4:31:62.23:0,62,752 0/0:38,5:43:93.29:0,93,1156 0/0:50,2:52:99:0,123,1518 0/0:31,5:36:75.23:0,75,914 0/0:29,6:35:63.19:0,63,770 0/0:30,2:32:57.18:0,57,713 0/0:32,3:35:87.27:0,87,1083 0/0:45,12:57:31.39:0,31,1231 0/0:35,7:42:74.82:0,75,898 0/0:34,7:41:92.26:0,92,1065 0/0:46,1:47:99:0,108,1337 0/0:29,4:33:29.74:0,30,689 0/0:33,9:42:84.26:0,84,1048 17 11513807 . T C 5540.76 . AC=38;AF=0.452;AN=84;BaseQRankSum=-16.605;DP=2442;Dels=0.00;FS=1669.233;HRun=3;HaplotypeScore=2.0433;InbreedingCoeff=-0.8292;MQ=58.76;MQ0=0;MQRankSum=1.285;QD=2.50;ReadPosRankSum=-20.342 GT:AD:DP:GQ:PL 0/1:26,21:47:99:137,0,687 0/1:29,26:55:99:154,0,760 0/1:25,22:47:99:146,0,753 0/1:46,46:92:99:452,0,1426 0/1:47,56:103:99:259,0,1379 0/1:33,51:84:23.42:23,0,1015 0/1:27,41:68:75.06:75,0,830 0/0:39,42:81:21.18:0,21,1135 0/1:15,22:37:99:155,0,469 0/1:23,15:38:23.04:23,0,588 0/1:20,15:35:46.99:47,0,511 0/1:31,32:63:99:207,0,769 0/1:14,18:32:99:114,0,407 0/1:19,23:42:99:204,0,432 0/1:80,68:148:99:348,0,2325 0/1:19,21:40:99:102,0,567 0/1:20,22:42:99:121,0,606 0/0:27,12:39:46.24:0,46,811 0/1:34,30:64:99:246,0,894 0/1:48,47:96:19.21:19,0,1361 0/1:46,25:71:99:146,0,1304 0/1:25,39:64:99:129,0,718 0/1:45,63:108:99:191,0,1339 0/1:22,25:48:99:150,0,728 0/1:42,31:73:24.40:24,0,1252 0/0:28,31:59:18.39:0,18,817 0/1:22,21:43:99:176,0,659 0/0:31,17:48:7.80:0,8,911 0/1:23,17:40:99:121,0,754 0/1:21,19:40:64.34:64,0,550 0/1:26,23:49:99:157,0,722 0/1:37,30:67:24.83:25,0,1051 0/1:22,26:48:12.22:12,0,650 0/1:17,21:38:99:216,0,508 0/1:19,18:37:81.24:81,0,591 0/1:28,20:48:80.88:81,0,874 0/1:33,31:64:99:362,0,892 0/1:22,31:53:99:190,0,595 0/1:26,22:48:99:153,0,768 0/1:32,18:50:32.88:33,0,940 0/1:20,23:43:99:190,0,467 0/1:28,21:49:99:206,0,724 17 11532835 . A G 31737.01 . AC=23;AF=0.274;AN=84;BaseQRankSum=16.648;DP=3781;DS;Dels=0.00;FS=6.084;HRun=1;HaplotypeScore=1.1803;InbreedingCoeff=-0.1376;MQ=58.59;MQ0=0;MQRankSum=2.702;QD=16.59;ReadPosRankSum=-0.941 GT:AD:DP:GQ:PL 0/0:80,0:80:99:0,223,2800 0/1:35,32:67:99:967,0,1101 0/1:29,26:55:99:768,0,895 0/0:194,0:194:99:0,533,6863 0/0:126,0:126:99:0,358,4599 0/1:80,51:131:99:1639,0,2537 0/1:42,44:86:99:1331,0,1264 0/0:97,0:97:99:0,268,3457 0/0:89,0:89:99:0,244,3064 0/0:67,1:68:99:0,143,2224 0/0:51,0:51:99:0,147,1858 0/0:64,0:64:99:0,181,2243 0/0:56,0:56:99:0,163,2017 0/1:36,29:65:99:871,0,1026 0/1:110,85:195:99:2424,0,3238 0/0:71,0:71:99:0,202,2529 0/1:46,38:84:99:1087,0,1398 0/0:77,0:77:99:0,217,2666 0/1:45,53:98:99:1503,0,1271 0/1:57,63:120:99:1843,0,1551 0/0:111,0:111:99:0,298,3792 0/0:76,0:76:99:0,205,2544 0/1:74,85:159:99:2730,0,2244 0/1:45,52:97:99:1697,0,1436 1/1:0,112:112:99:4243,316,0 0/0:109,1:110:99:0,262,3835 0/1:24,25:49:99:794,0,706 0/1:46,39:85:99:1041,0,1307 0/1:21,36:57:99:1040,0,633 0/1:43,36:79:99:1010,0,1304 0/1:41,40:81:99:1049,0,1325 0/0:119,1:121:99:0,310,3971 1/1:0,68:68:99:2399,190,0 0/0:66,0:66:99:0,184,2299 0/0:63,0:63:99:0,172,2170 0/1:35,53:88:99:1620,0,987 0/0:115,0:115:99:0,325,4071 0/0:84,0:84:99:0,238,2961 0/0:84,0:84:99:0,238,2964 0/1:48,34:82:99:1032,0,1444 0/1:32,22:54:99:649,0,929 0/0:65,0:65:99:0,184,2267 17 11550421 . G A 6041.05 . AC=5;AF=0.060;AN=84;BaseQRankSum=13.300;DP=3903;DS;Dels=0.00;FS=9.085;HRun=0;HaplotypeScore=3.1250;InbreedingCoeff=-0.0633;MQ=59.42;MQ0=0;MQRankSum=0.405;QD=16.02;ReadPosRankSum=-1.019 GT:AD:DP:GQ:PL 0/0:80,0:80:99:0,226,2513 0/0:73,0:73:99:0,217,2350 0/0:70,0:71:99:0,211,2279 0/0:132,1:133:99:0,348,4587 0/0:123,0:123:99:0,355,4358 0/0:128,0:128:99:0,370,4553 0/0:90,0:90:99:0,247,3022 0/0:89,0:89:99:0,256,3093 0/0:65,0:65:99:0,189,2108 0/0:73,1:74:99:0,175,2255 0/0:87,0:87:99:0,241,2700 0/0:84,0:84:99:0,241,2660 0/0:47,0:47:99:0,138,1517 0/0:73,0:73:99:0,214,2311 0/0:250,0:250:99:0,671,7523 0/0:59,1:60:99:0,140,1851 0/0:74,0:74:99:0,214,2373 0/0:71,0:71:99:0,202,2226 0/0:129,0:130:99:0,373,4048 0/0:146,0:146:99:0,418,4686 0/0:122,0:122:99:0,352,3906 0/0:91,0:91:99:0,268,2937 0/0:160,0:160:99:0,454,5480 0/0:115,0:115:99:0,319,3885 0/0:115,0:115:99:0,322,3920 0/0:96,0:96:99:0,277,3368 0/0:48,0:48:99:0,141,1543 0/0:101,0:101:99:0,292,3193 0/1:26,25:51:99:726,0,630 0/0:68,0:68:99:0,202,2210 0/0:75,0:75:99:0,211,2354 0/0:124,0:124:99:0,340,3829 0/0:74,0:75:99:0,220,2418 0/0:70,0:70:99:0,208,2275 0/0:73,0:73:99:0,202,2310 0/0:86,0:86:99:0,253,2776 0/1:47,57:104:99:1679,0,1211 0/1:36,34:70:99:1009,0,992 0/0:69,0:69:99:0,205,2230 0/1:39,50:89:99:1594,0,950 0/1:28,34:63:99:1033,0,680 0/0:90,0:90:99:0,262,2882 17 11550431 . A G 2337.22 . AC=2;AF=0.024;AN=84;BaseQRankSum=-13.223;DP=4480;DS;Dels=0.00;FS=6.130;HRun=1;HaplotypeScore=3.9701;InbreedingCoeff=-0.0244;MQ=59.43;MQ0=0;MQRankSum=0.847;QD=11.40;ReadPosRankSum=-0.961 GT:AD:DP:GQ:PL 0/0:87,0:87:99:0,244,3000 0/0:91,0:91:99:0,259,3202 0/0:79,0:80:99:0,238,2874 0/0:157,0:157:99:0,451,5600 0/0:136,0:136:99:0,400,5032 0/0:145,0:145:99:0,418,5317 0/0:109,1:110:99:0,286,3953 0/0:101,0:101:99:0,292,3635 0/0:76,0:76:99:0,229,2722 0/0:84,0:84:99:0,241,2941 0/0:102,0:102:99:0,292,3540 0/0:91,0:92:99:0,265,3245 0/0:54,0:54:99:0,153,1890 0/0:84,0:84:99:0,247,2998 0/0:250,0:250:99:0,689,8439 0/0:70,0:70:99:0,208,2502 0/0:84,0:84:99:0,238,2923 0/0:81,0:81:99:0,232,2820 0/0:148,0:148:99:0,409,4963 0/0:175,2:177:99:0,454,5935 0/0:145,0:145:99:0,409,5040 0/0:104,0:104:99:0,295,3632 0/0:179,1:180:99:0,503,6225 0/0:125,0:125:99:0,346,4392 0/0:117,0:117:99:0,337,4238 0/0:107,0:107:99:0,307,3807 0/0:62,0:62:99:0,184,2224 0/0:112,2:114:99:0,272,3943 0/0:61,0:61:99:0,169,2107 0/0:84,0:84:99:0,241,2929 0/0:79,0:79:99:0,223,2738 0/0:146,0:147:99:0,406,5099 0/0:93,0:93:99:0,271,3270 0/0:89,0:89:99:0,256,3139 0/0:82,0:82:99:0,223,2791 0/0:98,0:99:99:0,277,3450 0/1:68,56:124:99:1394,0,2033 0/0:97,0:97:99:0,265,3245 0/1:41,40:81:99:1006,0,1102 0/0:108,0:108:99:0,301,3734 0/0:69,0:70:99:0,193,2351 0/0:101,0:101:99:0,277,3430 17 11603194 . C T 1137.67 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.321;DP=2534;Dels=0.00;FS=2.126;HRun=0;HaplotypeScore=1.2700;InbreedingCoeff=-0.0244;MQ=59.41;MQ0=0;MQRankSum=0.635;QD=11.38;ReadPosRankSum=0.781 GT:AD:DP:GQ:PL 0/0:47,0:48:99:0,132,1462 0/0:54,0:54:99:0,144,1626 0/0:43,0:43:99:0,117,1329 0/0:98,0:98:99:0,268,3289 0/0:82,0:82:99:0,223,2781 0/0:79,0:79:99:0,214,2675 0/0:60,1:61:99:0,122,1935 0/0:73,0:73:99:0,202,2483 0/0:56,0:56:99:0,159,1791 0/0:41,0:41:99:0,108,1254 0/0:46,0:46:99:0,132,1426 0/0:38,0:38:99:0,105,1204 0/0:31,0:31:87.22:0,87,976 0/0:50,0:50:99:0,138,1557 0/0:205,0:206:99:0,544,6203 0/0:40,0:40:99:0,114,1268 0/0:42,0:42:99:0,117,1306 0/0:40,0:40:99:0,102,1138 0/0:82,0:82:99:0,214,2391 0/0:72,0:72:99:0,202,2265 0/0:97,0:97:99:0,253,2965 0/0:40,0:40:99:0,108,1212 0/0:105,0:105:99:0,277,3519 0/0:52,0:52:99:0,147,1848 0/0:63,0:63:99:0,165,2051 0/0:55,0:55:99:0,141,1769 0/0:44,0:44:99:0,123,1361 0/0:46,0:46:99:0,135,1465 0/0:50,0:50:99:0,141,1560 0/1:25,23:48:99:597,0,632 0/0:42,0:42:99:0,114,1282 0/0:68,0:69:99:0,180,2023 0/1:29,23:52:99:603,0,757 0/0:50,0:50:99:0,147,1606 0/0:53,0:53:99:0,144,1645 0/0:44,0:44:99:0,123,1403 0/0:81,0:81:99:0,190,2229 0/0:61,0:61:99:0,162,1852 0/0:49,0:49:99:0,138,1546 0/0:50,0:50:99:0,132,1501 0/0:41,0:42:99:0,111,1290 0/0:59,0:59:99:0,162,1854 17 11687721 . G A 4313.50 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.612;DP=6763;DS;Dels=0.00;FS=0.292;HRun=0;HaplotypeScore=3.7793;InbreedingCoeff=-0.0244;MQ=59.45;MQ0=0;MQRankSum=0.013;QD=14.77;ReadPosRankSum=0.146 GT:AD:DP:GQ:PL 0/1:78,72:150:99:1923,0,2068 0/1:58,84:142:99:2391,0,1531 0/0:98,0:98:99:0,274,3105 0/0:218,0:218:99:0,629,7811 0/0:221,0:221:99:0,638,7953 0/0:221,0:221:99:0,608,7616 0/0:215,0:215:99:0,608,7675 0/0:203,0:203:99:0,557,6964 0/0:121,0:121:99:0,343,3959 0/0:114,0:115:99:0,322,3729 0/0:135,0:135:99:0,382,4355 0/0:121,0:121:99:0,334,3862 0/0:93,0:93:99:0,265,3027 0/0:136,0:136:99:0,382,4413 0/0:249,0:250:99:0,704,8028 0/0:112,1:113:99:0,293,3693 0/0:157,0:157:99:0,418,4902 0/0:128,0:128:99:0,352,4100 0/0:218,0:218:99:0,596,6863 0/0:242,0:243:99:0,647,7513 0/0:242,0:242:99:0,665,7627 0/0:137,0:137:99:0,382,4412 0/0:204,2:206:99:0,533,7411 0/0:179,0:179:99:0,496,6315 0/0:216,0:216:99:0,578,7392 0/0:177,0:177:99:0,488,6186 0/0:97,0:98:99:0,268,3087 0/0:153,0:153:99:0,427,4927 0/0:107,0:107:99:0,310,3604 0/0:156,0:156:99:0,433,5035 0/0:143,0:143:99:0,415,4747 0/0:222,0:224:99:0,596,6849 0/0:184,0:184:99:0,499,5815 0/0:147,0:147:99:0,424,4855 0/0:107,0:107:99:0,310,3543 0/0:158,0:158:99:0,427,4971 0/0:207,0:208:99:0,565,6427 0/0:121,1:122:99:0,318,3956 0/0:126,0:126:99:0,370,4188 0/0:118,0:118:99:0,340,3873 0/0:124,0:124:99:0,355,4073 0/0:133,0:133:99:0,385,4445 17 11713652 . G T 624.80 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.503;DP=3692;DS;Dels=0.00;FS=5.379;HRun=2;HaplotypeScore=2.2578;InbreedingCoeff=-0.0120;MQ=59.49;MQ0=0;MQRankSum=-0.745;QD=13.58;ReadPosRankSum=-1.856 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,144,1820 0/0:71,0:71:99:0,205,2484 0/0:57,0:57:99:0,166,2027 0/0:181,0:181:99:0,490,6393 0/0:151,0:151:99:0,424,5602 0/0:130,0:130:99:0,352,4655 0/0:127,0:127:99:0,328,4383 0/0:113,0:113:99:0,295,3923 0/0:57,0:57:99:0,159,1943 0/0:49,0:49:99:0,135,1708 0/0:46,0:46:99:0,129,1626 0/0:59,0:59:99:0,163,2023 0/0:57,0:57:99:0,162,1987 0/0:65,0:65:99:0,181,2223 0/0:217,0:217:99:0,584,7167 0/0:49,0:49:99:0,138,1680 0/0:66,0:66:99:0,184,2256 0/1:22,24:46:99:671,0,602 0/0:124,1:125:99:0,337,4002 0/0:126,1:127:99:0,333,4153 0/0:116,1:117:99:0,307,3728 0/0:80,0:80:99:0,226,2803 0/0:182,0:182:99:0,491,6493 0/0:109,0:109:99:0,298,3992 0/0:130,0:130:99:0,343,4547 0/0:110,0:110:99:0,298,3907 0/0:47,0:47:99:0,126,1551 0/0:50,0:50:99:0,141,1724 0/0:50,0:50:99:0,132,1643 0/0:79,0:79:99:0,214,2556 0/0:61,0:61:99:0,169,2081 0/0:125,0:125:99:0,340,4287 0/0:78,0:78:99:0,211,2586 0/0:60,0:60:99:0,169,2091 0/0:62,0:62:99:0,172,2083 0/0:80,0:80:99:0,220,2739 0/0:96,0:96:99:0,235,2890 0/0:110,0:110:99:0,304,3670 0/0:49,0:49:99:0,135,1633 0/0:55,0:55:99:0,156,1932 0/0:48,0:48:99:0,132,1639 0/0:65,0:65:99:0,175,2163 17 11725337 . C T 3942.26 . AC=5;AF=0.060;AN=84;BaseQRankSum=-10.277;DP=2396;Dels=0.00;FS=1.072;HRun=1;HaplotypeScore=1.0012;InbreedingCoeff=-0.0633;MQ=59.32;MQ0=0;MQRankSum=0.038;QD=15.90;ReadPosRankSum=-1.471 GT:AD:DP:GQ:PL 0/1:19,28:47:99:861,0,561 0/1:24,27:51:99:729,0,639 0/0:44,0:44:99:0,117,1507 0/0:97,0:97:99:0,259,3527 0/0:76,0:76:99:0,226,3053 0/0:62,0:62:99:0,181,2446 0/0:57,0:57:99:0,166,2219 0/0:64,0:64:99:0,175,2386 0/0:44,0:44:99:0,123,1539 0/0:43,0:43:99:0,114,1477 0/0:39,0:39:99:0,111,1414 0/0:52,0:52:99:0,147,1860 0/0:23,0:23:69.21:0,69,855 0/0:35,0:35:99:0,102,1284 0/0:173,0:173:99:0,433,5557 0/0:38,0:38:99:0,108,1347 0/0:67,0:67:99:0,187,2384 0/1:23,26:49:99:774,0,702 0/1:30,29:59:99:831,0,948 0/0:90,0:90:99:0,247,3142 0/0:70,0:70:99:0,190,2386 0/1:17,25:42:99:747,0,430 0/0:90,0:90:99:0,244,3365 0/0:52,0:52:99:0,153,2075 0/0:63,0:63:99:0,175,2381 0/0:66,0:66:99:0,184,2470 0/0:45,0:45:99:0,126,1576 0/0:44,0:44:99:0,126,1587 0/0:53,0:53:99:0,147,1886 0/0:55,0:55:99:0,156,1971 0/0:44,0:44:99:0,120,1550 0/0:58,0:58:99:0,160,2042 0/0:48,0:48:99:0,138,1743 0/0:51,0:51:99:0,144,1836 0/0:44,0:44:99:0,120,1538 0/0:46,0:46:99:0,132,1673 0/0:71,0:71:99:0,193,2409 0/0:55,0:55:99:0,144,1845 0/0:38,0:38:99:0,102,1298 0/0:61,0:61:99:0,178,2202 0/0:40,0:40:99:0,114,1455 0/0:50,0:50:99:0,138,1751 17 11833287 . A G 8288.89 . AC=21;AF=0.250;AN=84;BaseQRankSum=-8.582;DP=1224;Dels=0.00;FS=1.113;HRun=1;HaplotypeScore=0.6382;InbreedingCoeff=0.1746;MQ=59.43;MQ0=0;MQRankSum=0.708;QD=19.05;ReadPosRankSum=1.115 GT:AD:DP:GQ:PL 0/0:15,0:15:39.11:0,39,478 0/0:23,0:23:69.21:0,69,847 0/0:23,0:23:66.20:0,66,801 1/1:0,51:51:99:1769,150,0 0/1:25,25:50:99:736,0,767 0/0:36,0:36:99:0,102,1283 0/1:13,11:24:99:333,0,414 0/0:31,0:31:87.28:0,87,1099 0/1:8,10:18:99:240,0,241 0/0:25,0:25:69.21:0,69,851 1/1:0,19:19:54.15:620,54,0 0/0:43,0:43:99:0,111,1388 0/0:30,0:30:75.22:0,75,911 0/1:10,9:19:99:250,0,291 0/0:84,0:84:99:0,205,2570 0/1:12,9:21:99:235,0,351 0/1:12,6:18:99:114,0,327 0/0:17,0:17:51.16:0,51,631 0/0:36,0:36:96.30:0,96,1202 0/0:35,0:35:99:0,99,1210 0/0:46,0:46:99:0,117,1393 0/0:26,0:26:78.23:0,78,944 1/1:0,34:34:99:1203,99,0 0/0:26,0:26:69.20:0,69,864 0/0:25,0:25:66.21:0,66,848 0/0:33,0:33:99:0,99,1224 0/0:15,0:15:45.14:0,45,561 0/1:7,15:22:99:429,0,179 0/0:24,0:24:69.22:0,69,864 0/0:24,0:24:66.21:0,66,814 0/1:5,12:17:99:300,0,131 0/0:51,0:51:99:0,126,1589 0/0:29,0:29:84.24:0,84,1014 0/1:11,11:22:99:302,0,320 0/0:37,0:37:99:0,108,1301 0/1:12,13:25:99:377,0,361 0/1:15,18:33:99:449,0,410 0/0:29,0:29:84.26:0,84,1026 0/1:14,7:21:99:176,0,411 0/1:13,11:24:99:242,0,358 1/1:0,17:17:45.12:516,45,0 0/0:26,0:26:69.22:0,69,867 17 11833365 . G A 12540.90 . AC=21;AF=0.250;AN=84;BaseQRankSum=8.050;DP=1778;Dels=0.00;FS=2.150;HRun=0;HaplotypeScore=0.7566;InbreedingCoeff=0.1746;MQ=59.14;MQ0=0;MQRankSum=2.404;QD=17.99;ReadPosRankSum=1.923 GT:AD:DP:GQ:PL 0/0:34,0:34:87.23:0,87,1012 0/0:42,0:42:99:0,108,1308 0/0:32,0:32:87.25:0,87,1048 1/1:0,65:65:99:2103,163,0 0/1:29,21:50:99:545,0,865 0/0:49,1:50:94.77:0,95,1675 0/1:18,12:30:99:331,0,486 0/0:48,0:48:99:0,126,1626 0/1:22,22:44:99:630,0,604 0/0:28,0:28:72.20:0,72,859 1/1:0,25:25:75.22:906,75,0 0/0:35,0:35:87.22:0,87,1015 0/0:40,0:40:99:0,105,1243 0/1:21,14:35:99:373,0,618 0/0:106,0:106:99:0,259,3040 0/1:16,17:33:99:442,0,465 0/1:16,13:29:99:363,0,406 0/0:33,0:33:93.25:0,93,1074 0/0:48,0:48:99:0,114,1377 0/0:57,0:57:99:0,135,1674 0/0:61,0:61:99:0,144,1782 0/0:33,0:33:87.25:0,87,1033 1/1:0,49:49:99:1548,117,0 0/0:30,0:30:75.23:0,75,966 0/0:43,0:43:96.31:0,96,1298 0/0:43,0:43:99:0,114,1443 0/0:20,0:20:57.16:0,57,667 0/1:18,16:34:99:467,0,466 0/0:43,0:43:99:0,108,1269 0/0:47,0:47:99:0,120,1477 0/1:10,20:30:99:634,0,200 0/0:55,0:55:99:0,129,1561 0/0:43,0:43:99:0,108,1294 0/1:25,21:46:99:538,0,541 0/0:50,0:50:99:0,120,1465 0/1:24,18:42:99:520,0,629 0/1:28,28:56:99:836,0,674 0/0:37,0:37:90.22:0,90,1041 0/1:28,17:45:99:406,0,729 0/1:20,23:43:99:635,0,525 1/1:2,39:41:45.72:1262,46,0 0/0:22,0:22:63.17:0,63,715 17 12647691 . CCAG C 88.54 . 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C T 1243.66 . 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T C 13414.98 . AC=30;AF=0.357;AN=84;BaseQRankSum=-8.401;DP=1288;Dels=0.00;FS=9.085;HRun=0;HaplotypeScore=0.7834;InbreedingCoeff=0.0667;MQ=59.05;MQ0=0;MQRankSum=1.672;QD=17.74;ReadPosRankSum=-0.605 GT:AD:DP:GQ:PL 0/0:17,0:17:51.13:0,51,602 0/0:36,0:36:99:0,99,1180 0/1:11,11:22:99:307,0,330 0/1:24,27:51:99:839,0,668 0/1:19,20:39:99:599,0,543 0/0:34,0:34:90.29:0,90,1152 0/0:24,0:24:60.16:0,60,722 0/1:21,25:46:99:773,0,526 0/0:21,0:21:51.15:0,51,627 0/0:19,0:19:54.14:0,54,619 0/1:13,14:27:99:369,0,380 0/1:16,20:36:99:546,0,428 0/0:16,0:16:45.14:0,45,540 1/1:0,32:32:87.23:986,87,0 0/0:78,0:78:99:0,208,2485 0/0:27,0:27:72.22:0,72,890 0/0:39,0:39:99:0,102,1255 1/1:0,23:23:60.16:689,60,0 0/1:25,19:44:99:477,0,705 0/0:42,0:42:99:0,114,1368 0/1:22,14:36:99:314,0,623 1/1:0,26:26:78.19:868,78,0 0/1:23,25:48:99:792,0,692 0/0:25,0:25:69.20:0,69,819 0/1:18,23:41:99:678,0,482 0/0:25,0:25:72.21:0,72,867 0/1:16,10:26:99:227,0,470 1/1:0,23:23:69.18:758,69,0 0/0:20,0:20:57.17:0,57,686 1/1:0,19:19:57.16:644,57,0 0/1:13,10:23:99:243,0,356 0/1:14,19:33:99:485,0,348 0/1:13,13:26:99:346,0,317 0/1:16,9:25:99:236,0,461 1/1:0,27:27:75.19:839,75,0 0/0:24,0:24:66.19:0,66,780 0/0:36,0:36:99:0,105,1235 0/0:21,0:21:60.18:0,60,708 0/0:28,0:28:72.22:0,72,884 0/1:13,23:36:99:646,0,358 0/1:11,8:19:99:199,0,342 0/1:7,21:28:99:554,0,166 17 12905834 . C G 45.20 . 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G A 50606.28 . AC=30;AF=0.357;AN=84;BaseQRankSum=-7.373;DP=5111;DS;Dels=0.00;FS=5.567;HRun=1;HaplotypeScore=2.8533;InbreedingCoeff=0.0667;MQ=59.36;MQ0=0;MQRankSum=3.004;QD=17.79;ReadPosRankSum=0.169 GT:AD:DP:GQ:PL 0/0:96,0:96:99:0,271,3130 0/0:91,0:91:99:0,235,2792 0/1:42,34:76:99:937,0,1137 0/1:111,115:226:99:3097,0,3055 0/1:89,94:184:99:2518,0,2564 0/0:190,0:192:99:0,500,6458 0/0:190,0:190:99:0,472,6150 0/1:76,97:173:99:2630,0,2180 0/0:86,0:86:99:0,232,2760 0/0:78,1:79:99:0,185,2430 0/1:39,42:81:99:1125,0,986 0/1:47,61:108:99:1700,0,1219 0/0:79,0:79:99:0,217,2519 1/1:0,76:76:99:2520,208,0 0/0:177,0:179:99:0,469,5570 0/0:86,1:87:99:0,201,2728 0/0:92,0:92:99:0,256,2934 1/1:0,108:108:99:3590,301,0 0/1:71,64:136:99:1790,0,1989 0/0:168,0:168:99:0,424,5152 0/1:70,88:158:99:2562,0,1805 1/1:0,84:84:99:2689,226,0 0/1:108,113:221:99:3112,0,2925 0/0:190,1:191:99:0,465,6408 0/1:85,98:183:99:2596,0,2483 0/0:189,0:189:99:0,463,5976 0/1:28,35:63:99:1035,0,720 1/1:0,101:101:99:3132,256,0 0/0:99,0:99:99:0,262,3130 1/1:0,99:100:99:3199,268,0 0/1:35,33:69:99:970,0,937 0/1:69,75:144:99:2064,0,1700 0/1:40,53:93:99:1393,0,1058 0/1:41,28:69:99:733,0,1234 1/1:1,105:107:99:3398,247,0 0/0:94,0:94:99:0,259,2963 0/0:160,0:160:99:0,409,4989 0/0:100,0:100:99:0,271,3182 0/0:94,0:94:99:0,268,3136 0/1:39,54:93:99:1503,0,989 0/1:56,40:97:99:1029,0,1545 0/1:48,47:95:99:1285,0,1287 17 14005439 . G A 81315.14 . AC=56;AF=0.667;AN=84;BaseQRankSum=-34.582;DP=4443;DS;Dels=0.00;FS=12.729;HRun=0;HaplotypeScore=2.3251;InbreedingCoeff=0.1429;MQ=59.43;MQ0=0;MQRankSum=-0.385;QD=22.66;ReadPosRankSum=-0.080 GT:AD:DP:GQ:PL 1/1:1,65:66:99:2105,140,0 0/1:56,32:88:99:824,0,1718 0/1:44,33:77:99:913,0,1217 0/1:118,104:223:99:2623,0,3481 1/1:0,180:180:99:5811,481,0 0/0:174,0:174:99:0,460,6148 0/0:145,0:145:99:0,382,5163 0/1:87,81:169:99:2023,0,2728 0/1:42,38:80:99:969,0,1278 0/1:39,26:65:99:654,0,1212 0/1:25,44:69:99:1278,0,657 0/1:32,36:68:99:1015,0,927 1/1:0,74:74:99:2442,205,0 0/0:65,0:65:99:0,184,2307 0/1:128,121:249:99:3110,0,3714 1/1:1,75:76:99:2461,174,0 0/0:83,0:83:99:0,226,2872 1/1:0,75:78:99:2359,202,0 1/1:1,87:90:99:2698,223,0 0/1:50,54:104:99:1415,0,1509 1/1:0,99:99:99:2993,247,0 0/1:38,41:79:99:1114,0,1155 0/0:225,0:225:99:0,581,7852 0/1:77,78:156:99:1987,0,2464 0/0:162,0:162:99:0,427,5766 1/1:0,143:143:99:4739,394,0 1/1:0,66:66:99:2116,177,0 1/1:0,89:89:99:2981,247,0 0/1:33,44:77:99:1227,0,897 1/1:0,88:88:99:2869,241,0 1/1:0,93:93:99:2972,253,0 1/1:0,115:115:99:3484,286,0 1/1:0,61:61:99:1843,159,0 1/1:0,81:81:99:2609,223,0 1/1:0,79:80:99:2529,217,0 1/1:0,74:75:99:2401,205,0 1/1:0,115:115:99:3672,304,0 0/1:37,44:81:99:1205,0,1029 0/1:41,43:84:99:1190,0,1168 1/1:0,78:78:99:2562,217,0 0/1:41,44:85:99:1152,0,1263 1/1:0,88:88:99:2970,247,0 17 14139191 . C G 710.13 . 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A C 418.76 . AC=8;AF=0.095;AN=84;BaseQRankSum=-37.944;DP=4974;DS;Dels=0.00;FS=3200.000;HRun=2;HaplotypeScore=3.2276;InbreedingCoeff=-0.1162;MQ=52.39;MQ0=45;MQRankSum=8.235;QD=0.44;ReadPosRankSum=-33.527 GT:AD:DP:GQ:PL 0/0:83,28:111:99:0,144,2692 0/1:79,34:113:99:111,0,2277 0/0:52,26:78:1.32:4,0,1670 0/0:110,57:168:82.13:0,82,3577 0/0:104,54:159:99:0,158,3499 0/0:96,44:140:99:0,167,3323 0/0:108,49:157:99:0,111,3583 0/0:88,51:139:86.27:0,86,2810 0/0:60,21:81:43.65:0,44,1848 0/0:66,27:93:41.02:0,41,1973 0/0:66,19:85:64.70:0,65,2133 0/0:64,22:86:17.28:0,17,1963 0/0:54,25:79:59.56:0,60,1757 0/0:63,21:84:44.78:0,45,1955 0/0:162,88:250:31:0,31,4906 0/0:52,17:69:81.70:0,82,1660 0/1:78,29:107:99:141,0,2532 0/0:94,29:123:99:0,110,3075 0/1:127,51:178:92.51:93,0,3737 0/0:92,43:135:40.76:0,41,2861 0/1:121,60:181:72.82:73,0,3442 0/0:81,35:116:99:0,180,2547 0/0:122,63:185:99:0,140,3972 0/0:92,44:136:28.57:0,29,2995 0/0:95,42:137:85.51:0,86,2986 0/0:83,57:140:47.18:0,47,2653 0/0:54,18:72:99:0,137,1875 0/0:67,31:98:54.07:0,54,2152 0/1:64,30:94:8.35:8,0,1814 0/0:69,31:100:73.29:0,73,2100 0/0:74,21:95:60.79:0,61,2395 0/0:109,38:147:99:0,154,3598 0/0:70,37:107:34.13:0,34,2107 0/1:59,23:82:36.04:36,0,1824 0/1:76,35:111:25.94:26,0,2239 0/0:82,23:105:90.18:0,90,2580 0/0:119,37:156:99:0,132,3647 0/0:75,35:110:48.82:0,49,2257 0/0:75,28:103:8.77:0,9,2245 0/0:70,26:96:35.55:0,36,2048 0/1:58,29:87:47.74:48,0,1779 0/0:63,18:81:51.08:0,51,1888 17 15640806 . A C 53.32 . 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A G 936.42 . 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C T 25440.70 . 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G A 19588.18 . 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A G 1810.53 . 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C G 74.63 . 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C T 864.09 . 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T G 1850.96 . 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C A 3212.06 . 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T C 39452.97 . AC=63;AF=0.750;AN=84;BaseQRankSum=-0.562;DP=1834;Dels=0.00;FS=10.489;HRun=0;HaplotypeScore=13.6433;InbreedingCoeff=-0.2064;MQ=59.12;MQ0=0;MQRankSum=0.250;QD=21.89;ReadPosRankSum=-0.342 GT:AD:DP:GQ:PL 1/1:0,29:29:75.24:956,75,0 0/1:27,17:44:99:388,0,787 0/0:32,0:32:93.29:0,93,1135 0/1:44,31:75:99:953,0,1268 0/1:31,20:51:99:539,0,849 0/1:36,24:60:99:737,0,1034 0/1:35,27:62:99:751,0,971 0/1:36,11:47:99:317,0,992 0/1:28,14:42:99:394,0,767 0/1:16,16:32:99:447,0,460 1/1:0,32:32:87.26:1047,87,0 1/1:0,26:26:78.22:887,78,0 1/1:0,35:35:93.27:1102,93,0 0/1:21,20:41:99:542,0,614 1/1:0,121:121:99:3801,304,0 0/1:25,16:41:99:390,0,804 1/1:0,34:34:87.23:1047,87,0 1/1:0,45:45:99:1440,114,0 0/1:27,15:42:99:392,0,775 0/1:26,27:53:99:642,0,666 1/1:0,46:46:99:1432,123,0 0/1:15,20:35:99:528,0,395 1/1:0,70:70:99:2394,178,0 0/1:31,32:63:99:907,0,845 0/1:31,30:61:99:850,0,890 0/1:26,19:45:99:599,0,772 0/1:10,14:24:99:428,0,245 0/1:28,21:49:99:598,0,702 0/1:21,25:46:99:704,0,546 1/1:0,32:32:87.22:1014,87,0 1/1:0,35:35:93.26:1100,93,0 1/1:0,54:54:99:1712,141,0 1/1:0,32:32:90.28:1141,90,0 1/1:0,28:28:72.21:899,72,0 1/1:0,26:26:69.19:826,69,0 1/1:0,38:38:99:1218,105,0 1/1:0,37:38:90.24:1066,90,0 1/1:1,35:36:63.17:1164,63,0 1/1:0,43:43:99:1383,123,0 1/1:0,27:27:75.21:863,75,0 1/1:2,31:33:30.40:916,30,0 1/1:0,29:29:78.23:941,78,0 17 16344601 . G C 20389.43 . AC=35;AF=0.417;AN=84;BaseQRankSum=-18.023;DP=1833;Dels=0.00;FS=9.529;HRun=0;HaplotypeScore=13.6201;InbreedingCoeff=-0.1265;MQ=59.11;MQ0=0;MQRankSum=-0.958;QD=16.12;ReadPosRankSum=0.032 GT:AD:DP:GQ:PL 0/1:13,17:30:99:492,0,258 0/0:43,0:44:99:0,117,1472 0/0:33,0:33:87.28:0,87,1127 0/1:45,31:76:99:880,0,1378 0/0:51,0:51:99:0,129,1741 0/1:34,24:58:99:616,0,1053 0/0:58,0:58:99:0,153,2031 0/1:36,11:47:99:295,0,1109 0/1:28,14:42:99:346,0,803 0/1:16,16:32:99:402,0,496 0/1:13,21:34:99:567,0,282 0/0:26,0:26:75.22:0,75,911 0/1:22,11:33:99:226,0,668 0/0:42,0:42:99:0,120,1510 1/1:0,119:119:99:3483,298,0 0/1:25,16:41:99:352,0,827 0/1:16,19:35:99:487,0,420 1/1:0,45:45:99:1361,120,0 0/1:27,16:43:99:387,0,787 0/0:51,0:52:99:0,123,1588 0/1:22,24:47:99:612,0,588 0/0:35,0:35:93.25:0,93,1151 1/1:0,71:71:99:2284,181,0 0/0:62,0:62:99:0,160,2140 0/0:63,0:63:99:0,163,2167 0/1:26,18:44:99:505,0,843 0/1:10,14:24:99:399,0,259 0/1:29,21:50:99:553,0,808 0/1:21,26:47:99:658,0,592 0/1:22,11:33:99:235,0,602 0/1:19,15:34:99:400,0,551 0/1:34,19:53:99:443,0,1002 1/1:0,32:32:90.25:1025,90,0 1/1:0,28:28:72.18:820,72,0 0/1:14,12:26:99:295,0,412 0/1:20,18:38:99:446,0,558 0/1:18,19:38:99:442,0,519 1/1:1,35:36:61.48:1070,61,0 0/0:43,0:43:99:0,120,1437 0/0:27,0:27:75.20:0,75,883 0/0:32,0:32:96.26:0,96,1129 0/1:16,13:29:99:308,0,470 17 16665747 . ACTTCGC A 305.25 . AC=5;AF=0.066;AN=76;BaseQRankSum=4.857;DP=547;FS=18.819;HRun=0;HaplotypeScore=20.5682;InbreedingCoeff=-0.0051;MQ=13.89;MQ0=277;MQRankSum=4.716;QD=2.88;ReadPosRankSum=-3.519 GT:AD:DP:GQ:PL 0/0:8,0:2:6.02:0,6,186 0/0:14,0:4:12.04:0,12,441 0/0:15,0:3:9.03:0,9,347 0/0:17,0:5:12.04:0,12,431 0/0:13,0:3:9.03:0,9,279 0/0:14,0:6:18.06:0,18,637 0/0:13,0:3:9.03:0,9,268 0/0:17,0:3:12.03:0,12,281 0/0:9,0:3:9.03:0,9,317 0/1:18,3:5:66.17:66,0,190 ./.:.:1:.:0,0,0 0/0:9,0:2:3.01:0,3,114 0/0:8,0:2:6.02:0,6,220 0/0:5,0:3:9.01:0,9,244 0/0:33,0:13:39.13:0,39,1350 0/0:9,0:3:9.03:0,9,247 0/0:9,0:2:6.02:0,6,208 ./.:.:1:.:0,0,0 0/1:15,3:6:99:113,0,226 0/1:11,3:5:40.23:40,0,127 0/0:14,0:3:6.02:0,6,230 0/0:9,0:3:9.03:0,9,327 0/1:12,0:5:1.76:54,3,0 0/0:16,0:5:15.05:0,15,527 0/0:12,0:6:18.06:0,18,641 0/0:10,0:3:9.03:0,9,325 ./. 0/0:8,0:1:3.01:0,3,110 0/0:12,0:2:6.02:0,6,173 0/0:10,0:1:3.01:0,3,110 0/1:11,8:11:99:134,0,234 0/0:30,0:8:24.08:0,24,794 0/0:12,0:2:6.02:0,6,216 0/0:7,0:3:9.03:0,9,330 0/0:12,0:2:3.01:0,3,110 0/0:6,0:2:6.02:0,6,186 0/0:20,0:4:12.04:0,12,437 0/0:13,0:3:9.03:0,9,325 0/0:21,0:2:6.02:0,6,141 ./. 0/0:10,0:3:9.03:0,9,268 0/0:12,0:3:9.03:0,9,297 17 16665753 . C A 190.99 . AC=15;AF=0.188;AN=80;BaseQRankSum=-7.190;DP=670;Dels=0.03;FS=76.806;HRun=2;HaplotypeScore=4.1036;InbreedingCoeff=-0.2077;MQ=15.45;MQ0=288;MQRankSum=0.905;QD=0.67;ReadPosRankSum=-4.005 GT:AD:DP:GQ:PL 0/0:8,3:11:5.99:0,6,49 0/1:14,5:19:49.09:49,0,99 0/0:14,2:16:8.98:0,9,73 0/0:13,3:16:5.99:0,6,49 0/1:8,8:16:18.68:19,0,35 0/0:10,5:15:11.98:0,12,99 0/1:9,8:17:16.69:17,0,19 0/1:11,5:16:15.68:16,0,21 0/1:7,4:11:15.68:16,0,53 0/0:17,3:20:11.98:0,12,99 1/1:10,5:15:3:25,3,0 0/0:10,7:17:8.99:0,9,74 0/0:7,2:9:5.99:0,6,49 0/0:4,0:4:8.99:0,9,74 0/1:35,15:50:2.27:2,0,368 0/0:5,5:10:3:0,3,25 0/0:4,4:8:3:0,3,25 ./. 0/0:14,3:17:9:0,9,88 0/0:10,1:11:3:0,3,27 0/1:15,6:21:32.37:32,0,94 0/1:9,4:13:12.70:13,0,62 0/0:8,2:10:3:0,3,25 0/0:15,3:18:17.99:0,18,164 0/0:11,6:17:17.98:0,18,153 0/0:10,3:13:8.99:0,9,74 0/0:5,4:9:3:0,3,25 0/1:9,8:17:17.68:18,0,40 ./. 0/0:9,1:10:3:0,3,25 0/0:6,1:7:3:0,3,25 0/1:21,7:28:12.69:13,0,73 0/0:10,8:18:5.99:0,6,49 0/0:6,4:10:8.99:0,9,74 0/0:8,6:14:5.99:0,6,49 0/0:6,1:7:5.99:0,6,49 0/1:20,7:27:57.75:58,0,99 0/1:12,4:16:37.39:38,0,37 0/0:19,5:24:8.99:0,9,74 0/1:11,6:17:11.70:12,0,62 0/0:8,6:14:8.99:0,9,74 0/0:11,6:17:11.98:0,12,99 17 16852282 . C T 1527.18 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.054;DP=3497;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8933;InbreedingCoeff=-0.0120;MQ=59.23;MQ0=0;MQRankSum=0.792;QD=12.32;ReadPosRankSum=-0.803 GT:AD:DP:GQ:PL 0/0:68,0:68:99:0,189,2150 0/0:72,0:72:99:0,202,2311 0/0:41,0:41:99:0,111,1288 0/0:145,0:145:99:0,376,4709 0/0:138,0:138:99:0,394,4879 0/0:129,0:129:99:0,352,4358 0/0:120,0:120:99:0,322,4069 0/0:97,0:97:99:0,274,3333 0/0:71,0:71:99:0,199,2290 0/0:52,0:52:99:0,138,1545 0/0:51,0:51:99:0,141,1588 0/0:51,0:51:99:0,141,1567 0/0:48,0:48:99:0,129,1523 0/0:68,0:68:99:0,192,2178 0/0:228,0:229:99:0,611,7095 0/0:85,0:85:99:0,244,2723 0/0:71,0:71:99:0,202,2317 0/0:59,0:59:99:0,168,1921 0/0:104,0:104:99:0,289,3232 0/1:66,57:124:99:1573,0,1699 0/0:98,0:98:99:0,280,3124 0/0:60,0:60:99:0,168,1895 0/0:143,0:143:99:0,385,4854 0/0:85,0:86:99:0,241,3002 0/0:102,0:103:99:0,280,3521 0/0:93,0:93:99:0,259,3191 0/0:34,0:34:99:0,99,1100 0/0:80,0:80:99:0,220,2499 0/0:50,0:50:99:0,144,1621 0/0:69,0:69:99:0,196,2222 0/0:62,0:62:99:0,187,2130 0/0:107,0:107:99:0,292,3413 0/0:66,0:66:99:0,186,2126 0/0:66,0:66:99:0,189,2064 0/0:71,0:71:99:0,192,2200 0/0:64,0:64:99:0,174,2043 0/0:103,0:104:99:0,277,3212 0/0:71,0:71:99:0,205,2300 0/0:63,0:63:99:0,183,2074 0/0:77,0:77:99:0,214,2432 0/0:43,0:43:99:0,126,1375 0/0:63,0:63:99:0,180,2033 17 16946210 . C T 282.93 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.440;DP=828;Dels=0.00;FS=1.693;HRun=2;HaplotypeScore=0.5280;InbreedingCoeff=-0.0249;MQ=49.69;MQ0=16;MQRankSum=0.571;QD=9.43;ReadPosRankSum=-1.174 GT:AD:DP:GQ:PL 0/0:20,0:20:45.14:0,45,562 0/0:17,0:17:45.13:0,45,545 0/0:21,0:21:57.17:0,57,689 0/0:39,0:40:99:0,114,1450 0/0:38,0:38:99:0,108,1395 0/0:29,0:29:78.23:0,78,983 0/0:21,0:21:63.20:0,63,802 0/0:23,0:23:66.21:0,66,848 0/0:14,0:14:36.10:0,36,440 0/0:19,0:19:48.13:0,48,586 0/0:18,0:18:45.12:0,45,533 0/0:17,0:17:39.11:0,39,473 0/0:12,0:12:30.08:0,30,350 0/0:16,0:16:42.13:0,42,543 0/0:61,0:61:99:0,138,1731 0/0:25,0:25:63.17:0,63,747 0/0:12,0:13:30.09:0,30,367 0/1:7,3:10:80.59:81,0,153 0/0:19,0:19:48.15:0,48,596 0/0:16,0:16:45.14:0,45,568 0/0:17,0:17:48.14:0,48,579 0/0:19,0:19:45.14:0,45,567 0/0:59,0:59:99:0,166,2096 0/0:19,0:19:51.16:0,51,670 0/0:24,0:24:69.20:0,69,843 0/0:25,0:25:69.22:0,69,895 0/0:11,0:11:27.09:0,27,347 0/0:10,0:10:24.07:0,24,288 0/0:7,0:7:21.07:0,21,261 0/0:18,0:18:45.10:0,45,510 0/0:12,0:12:30.08:0,30,347 0/0:19,0:20:48.13:0,48,580 0/0:13,0:13:36.11:0,36,443 0/0:7,0:7:18.05:0,18,223 0/1:9,11:20:99:265,0,274 0/0:10,0:10:27.09:0,27,349 0/0:13,0:13:36.11:0,36,457 0/0:14,0:14:30.10:0,30,388 0/0:16,0:16:45.13:0,45,542 0/0:15,0:15:42.12:0,42,518 0/0:13,0:13:30.09:0,30,380 0/0:17,0:17:39.11:0,39,466 17 17034947 . A G 1143.58 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.798;DP=2571;Dels=0.00;FS=0.563;HRun=0;HaplotypeScore=1.4309;InbreedingCoeff=-0.0244;MQ=59.01;MQ0=3;MQRankSum=1.286;QD=10.40;ReadPosRankSum=-0.647 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,129,1569 0/0:67,0:67:99:0,172,2094 0/0:63,0:63:99:0,162,2001 0/0:71,0:71:99:0,196,2399 0/0:68,0:68:99:0,172,2190 0/0:54,0:55:99:0,144,1806 0/0:46,0:46:99:0,111,1437 0/0:61,0:61:99:0,165,2028 0/0:56,0:56:99:0,165,1949 0/0:42,0:42:99:0,105,1287 0/0:56,0:56:99:0,159,1880 0/0:56,0:56:99:0,147,1813 0/0:41,0:41:99:0,108,1345 0/0:79,0:79:99:0,205,2497 0/0:180,0:180:99:0,436,5336 0/0:51,0:51:99:0,135,1604 0/0:59,0:59:99:0,159,1941 0/0:57,0:57:99:0,150,1856 0/0:79,0:79:99:0,202,2449 0/0:78,0:79:99:0,205,2517 0/0:76,0:76:99:0,208,2497 0/0:57,0:57:99:0,141,1739 0/0:78,0:78:99:0,211,2595 0/0:39,0:39:99:0,102,1294 0/0:45,0:47:99:0,114,1404 0/0:32,0:32:87.24:0,87,1064 0/0:42,0:42:99:0,117,1417 0/0:49,0:49:99:0,120,1491 0/0:55,0:56:99:0,147,1735 0/0:69,0:69:99:0,178,2185 0/0:46,0:46:99:0,123,1524 0/0:91,0:92:99:0,220,2787 0/0:56,0:57:99:0,144,1802 0/1:32,20:52:99:502,0,939 0/1:29,29:58:99:704,0,767 0/0:64,0:64:99:0,178,2187 0/0:95,0:95:99:0,229,2806 0/0:54,0:54:99:0,138,1703 0/0:55,0:55:99:0,147,1774 0/0:42,0:42:99:0,111,1359 0/0:47,0:47:99:0,129,1558 0/0:51,0:51:99:0,138,1697 17 17039561 . CCAG C 1287.43 . 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C T 1890.89 . AC=4;AF=0.048;AN=84;BaseQRankSum=1.937;DP=2269;Dels=0.00;FS=0.524;HRun=0;HaplotypeScore=1.9775;InbreedingCoeff=-0.0500;MQ=59.25;MQ0=0;MQRankSum=2.771;QD=15.76;ReadPosRankSum=-0.115 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,108,1244 0/0:24,0:24:66.17:0,66,774 0/0:24,0:24:69.16:0,69,784 0/0:150,0:151:99:0,421,5260 0/0:126,0:126:99:0,340,4231 0/0:92,0:92:99:0,247,3030 0/0:96,0:96:99:0,256,3197 0/0:86,0:87:99:0,223,2749 0/0:23,0:23:66.16:0,66,759 0/0:23,0:23:66.16:0,66,752 0/0:21,0:21:63.16:0,63,723 0/0:41,0:41:99:0,114,1337 0/0:16,0:16:48.13:0,48,555 0/0:34,0:34:99:0,102,1217 0/0:96,0:97:99:0,247,2882 0/0:33,0:33:87.21:0,87,991 0/0:35,0:36:99:0,102,1184 0/1:15,14:29:99:432,0,347 0/0:64,0:64:99:0,177,2052 0/0:73,0:74:99:0,205,2382 0/0:66,0:66:99:0,180,2094 0/0:43,0:43:99:0,114,1332 0/0:149,0:150:99:0,397,4857 0/0:80,0:81:99:0,199,2470 0/0:112,0:112:99:0,289,3547 0/0:103,0:103:99:0,274,3345 0/0:23,0:23:60.18:0,60,728 0/0:37,0:37:96.26:0,96,1111 0/0:21,0:21:63.12:0,63,696 0/0:31,0:32:90.25:0,90,1040 0/0:20,0:20:51.10:0,51,570 0/0:94,0:96:99:0,253,2963 0/0:48,0:48:99:0,126,1520 0/1:18,16:34:99:454,0,450 0/1:13,14:27:99:434,0,310 0/1:10,20:30:99:657,0,256 0/0:62,0:62:99:0,165,1900 0/0:38,0:38:99:0,102,1218 0/0:29,0:29:84.22:0,84,994 0/0:31,0:31:81.22:0,81,943 0/0:30,0:30:84.21:0,84,955 0/0:27,0:27:72.17:0,72,804 17 17250159 . C T 1217.39 . AC=4;AF=0.048;AN=84;BaseQRankSum=-1.691;DP=956;Dels=0.00;FS=24.554;HRun=0;HaplotypeScore=1.5455;InbreedingCoeff=-0.0501;MQ=57.50;MQ0=0;MQRankSum=0.006;QD=13.38;ReadPosRankSum=1.402 GT:AD:DP:GQ:PL 0/0:13,0:13:36.10:0,36,439 0/0:16,0:16:42.13:0,42,513 0/0:12,0:12:36.11:0,36,444 0/0:66,0:66:99:0,193,2385 0/0:56,0:56:99:0,144,1788 0/0:40,0:40:99:0,108,1386 0/0:27,0:27:75.21:0,75,925 0/0:31,0:32:90.29:0,90,1189 0/0:24,0:24:63.18:0,63,761 0/0:11,0:12:33.08:0,33,386 0/0:12,0:12:36.10:0,36,425 0/0:17,0:17:51.15:0,51,614 0/0:13,0:13:39.11:0,39,465 0/0:12,0:12:33.07:0,33,362 0/0:48,0:49:99:0,129,1574 0/0:18,0:18:39.11:0,39,465 0/0:24,0:24:66.20:0,66,801 0/0:19,0:19:54.15:0,54,635 0/0:27,0:28:72.21:0,72,857 0/0:32,0:32:93.26:0,93,1115 0/1:17,15:32:99:462,0,443 0/1:10,9:19:99:194,0,274 0/0:52,0:52:99:0,141,1771 0/0:24,0:24:69.22:0,69,894 0/0:38,0:38:96.27:0,96,1200 0/0:20,0:20:60.17:0,60,744 0/0:13,0:13:39.12:0,39,482 0/0:15,0:15:42.13:0,42,524 0/0:11,0:11:33.10:0,33,395 0/1:6,6:12:99:187,0,158 0/0:9,0:9:27.08:0,27,324 0/0:28,0:28:84.23:0,84,1021 0/1:12,16:28:99:462,0,334 0/0:17,0:17:51.13:0,51,571 0/0:12,0:12:36.08:0,36,397 0/0:10,0:10:27.08:0,27,337 0/0:27,0:27:75.22:0,75,910 0/0:13,0:13:36.11:0,36,449 0/0:9,0:9:27.08:0,27,328 0/0:12,0:12:30.09:0,30,364 0/0:14,0:14:39.11:0,39,482 0/0:19,0:19:54.15:0,54,634 17 17250160 . G C 408.68 . AC=10;AF=0.119;AN=84;BaseQRankSum=-7.115;DP=982;Dels=0.00;FS=593.681;HRun=2;HaplotypeScore=1.4926;InbreedingCoeff=-0.1633;MQ=57.64;MQ0=0;MQRankSum=1.832;QD=1.45;ReadPosRankSum=-8.658 GT:AD:DP:GQ:PL 0/1:9,4:13:76.22:76,0,221 0/0:14,2:16:39.10:0,39,424 0/1:11,1:12:6.92:7,0,287 0/1:52,14:66:99:123,0,1572 0/0:48,9:57:85.05:0,85,1484 0/0:36,7:43:50.15:0,50,1137 0/0:26,2:28:75.15:0,75,839 0/0:29,5:34:25.71:0,26,879 0/0:21,4:25:29.74:0,30,637 0/0:10,0:10:30.07:0,30,315 0/0:11,2:13:33.08:0,33,357 0/0:16,1:17:42.06:0,42,424 0/0:12,1:13:36.08:0,36,379 0/0:9,2:11:2.33:1,0,260 0/1:38,9:47:31.52:32,0,997 0/0:14,4:18:33.61:0,34,374 0/1:20,4:24:9.83:10,0,540 0/1:14,5:19:7.23:7,0,392 0/0:23,6:30:2.23:2,0,643 0/0:28,4:32:45.18:0,45,828 0/0:28,4:33:78.20:0,78,896 0/0:17,3:20:48.12:0,48,544 0/0:47,8:55:58.50:0,58,1417 0/0:20,4:24:31.53:0,32,646 0/1:32,9:41:19.62:20,0,933 0/0:19,3:22:5.86:0,6,587 0/0:12,2:14:9.41:0,9,335 0/1:12,3:15:23.15:23,0,344 0/0:12,0:12:36.09:0,36,402 0/0:11,1:12:8.43:0,8,353 0/0:8,2:10:2.29:2,0,227 0/0:27,3:30:42.90:0,43,762 0/0:28,1:29:78.22:0,78,911 0/1:8,9:17:99:174,0,206 0/0:11,1:12:33.06:0,33,337 0/0:9,1:10:27.06:0,27,290 0/1:22,5:27:59.58:60,0,564 0/0:12,2:14:36.09:0,36,389 0/0:10,0:10:27.07:0,27,302 0/0:11,0:11:27.06:0,27,280 0/0:14,1:15:39.10:0,39,415 0/0:17,3:20:20.54:0,21,507 17 17394611 . G A 23878.86 . AC=27;AF=0.321;AN=84;BaseQRankSum=14.073;DP=2780;Dels=0.00;FS=1.044;HRun=0;HaplotypeScore=1.7886;InbreedingCoeff=-0.0370;MQ=58.93;MQ0=0;MQRankSum=0.538;QD=17.46;ReadPosRankSum=0.627 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,156,1790 0/0:53,0:53:99:0,144,1681 0/0:45,0:46:99:0,120,1389 0/0:119,0:119:99:0,304,3763 0/0:92,0:92:99:0,241,3008 0/0:81,0:81:99:0,217,2662 0/0:80,0:80:99:0,202,2491 0/1:37,32:69:99:903,0,976 0/1:28,29:57:99:815,0,721 0/1:20,27:47:99:824,0,478 0/0:54,0:54:99:0,144,1638 1/1:1,48:49:94.15:1569,94,0 1/1:0,42:42:99:1323,108,0 0/1:25,23:48:99:622,0,713 0/1:91,97:190:99:2445,0,2458 0/0:59,1:60:99:0,138,1880 0/1:23,16:39:99:443,0,624 0/1:32,31:63:99:931,0,833 0/1:34,54:88:99:1573,0,783 0/0:92,0:92:99:0,238,2735 0/0:92,0:92:99:0,232,2683 0/0:64,0:64:99:0,168,1957 0/0:140,0:140:99:0,346,4352 0/1:26,19:45:99:568,0,729 0/0:80,0:80:99:0,211,2548 1/1:0,60:60:99:1920,147,0 0/1:19,22:41:99:629,0,486 1/1:1,62:63:99:2035,135,0 0/1:24,20:44:99:579,0,632 0/0:59,0:59:99:0,156,1816 0/0:37,0:37:99:0,105,1176 0/0:93,0:93:99:0,241,2795 0/0:57,0:57:99:0,153,1756 0/1:29,37:66:99:1102,0,687 0/1:21,29:50:99:880,0,557 0/1:20,25:45:99:762,0,531 0/1:29,39:69:99:1152,0,648 0/1:26,30:56:99:858,0,655 0/1:29,27:56:99:772,0,707 0/0:56,0:56:99:0,153,1743 0/1:17,15:32:99:404,0,446 0/1:23,26:49:99:770,0,624 17 17480273 . G A 224.86 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.780;DP=1682;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.3402;InbreedingCoeff=-0.0121;MQ=58.94;MQ0=0;MQRankSum=-0.185;QD=11.24;ReadPosRankSum=1.820 GT:AD:DP:GQ:PL 0/0:35,0:35:84.19:0,84,897 0/0:37,0:40:84.21:0,84,914 0/0:21,0:21:48.08:0,48,492 0/0:91,1:94:99:0,201,2616 0/0:67,0:73:99:0,174,2025 0/0:68,0:68:99:0,186,2123 0/0:57,0:57:99:0,147,1686 0/0:75,0:76:99:0,190,2180 0/0:32,0:33:72.19:0,72,813 0/0:31,0:31:72.18:0,72,782 0/0:24,0:25:60.13:0,60,650 0/0:28,0:29:66.16:0,66,720 0/0:14,0:17:42.08:0,42,433 0/0:26,0:29:66.13:0,66,686 0/0:84,0:90:99:0,195,2077 0/0:24,0:25:63.15:0,63,691 0/0:21,0:21:45.11:0,45,482 0/0:25,0:29:54.12:0,54,569 0/0:36,1:39:51.65:0,52,907 0/0:61,0:61:99:0,132,1458 0/0:30,0:34:81.20:0,81,886 0/1:8,10:20:99:271,0,218 0/0:97,0:100:99:0,244,2774 0/0:59,0:59:99:0,153,1796 0/0:55,0:55:99:0,147,1703 0/0:39,0:39:99:0,108,1265 0/0:20,0:21:48.10:0,48,515 0/0:34,0:36:69.14:0,69,721 0/0:20,0:22:51.13:0,51,569 0/0:32,0:33:72.18:0,72,797 0/0:23,1:26:38.45:0,38,587 0/0:42,0:43:96.24:0,96,1070 0/0:38,0:39:90.21:0,90,961 0/0:21,0:22:54.12:0,54,567 0/0:28,0:28:63.11:0,63,666 0/0:29,0:30:72.15:0,72,771 0/0:40,0:41:96.24:0,96,1059 0/0:26,0:28:60.14:0,60,644 0/0:23,0:23:60.15:0,60,652 0/0:35,0:36:78.21:0,78,881 0/0:22,0:24:51.13:0,51,562 0/0:30,0:30:60.14:0,60,636 17 17480274 . G C 467.73 . AC=18;AF=0.214;AN=84;BaseQRankSum=-15.310;DP=2126;Dels=0.00;FS=1200.707;HRun=1;HaplotypeScore=2.4081;InbreedingCoeff=-0.2771;MQ=59.09;MQ0=0;MQRankSum=-0.812;QD=0.53;ReadPosRankSum=-14.517 GT:AD:DP:GQ:PL 0/0:32,8:40:23.76:0,24,862 0/1:27,16:44:99:105,0,741 0/0:17,13:30:9.55:0,10,501 0/0:81,46:127:97.91:0,98,2648 0/1:57,43:100:26.99:27,0,1870 0/0:66,23:89:99:0,113,2256 0/0:50,31:81:99:0,114,1806 0/0:67,29:97:99:0,155,2272 0/0:22,15:37:25.29:0,25,551 0/0:24,17:41:69.20:0,69,841 0/1:19,19:38:49.85:50,0,464 0/1:21,15:36:30.40:30,0,540 0/0:12,6:18:4.35:0,4,346 0/1:23,14:37:29.49:29,0,599 0/1:70,48:118:25.46:25,0,1856 0/0:24,9:33:23.56:0,24,576 0/0:18,17:35:12.64:0,13,500 0/1:20,12:32:33.61:34,0,492 0/0:35,17:52:23.17:0,23,933 0/0:54,25:79:91.72:0,92,1425 0/1:27,14:41:11.01:11,0,784 0/1:18,8:26:12.45:12,0,529 0/1:84,46:130:40.94:41,0,2495 0/0:52,21:73:56.05:0,56,1724 0/0:48,14:62:93.08:0,93,1473 0/0:39,14:53:99:0,105,1393 0/1:16,9:25:22:22,0,442 0/1:25,17:42:56.53:57,0,691 0/0:18,9:27:25.02:0,25,504 0/0:24,13:37:34.32:0,34,707 0/1:23,10:33:27.32:27,0,668 0/0:36,21:58:56.66:0,57,1002 0/0:33,11:44:27.15:0,27,1079 0/0:19,8:27:22.49:0,22,544 0/1:24,8:32:57.79:58,0,638 0/1:21,12:33:11.83:12,0,622 0/1:33,15:48:16.37:16,0,913 0/0:24,13:37:56.55:0,57,647 0/0:21,8:29:24.66:0,25,616 0/1:28,16:44:50.60:51,0,755 0/1:17,12:29:25.34:25,0,439 0/0:22,10:32:23.57:0,24,617 17 17719989 . C T 133.56 . AC=2;AF=0.025;AN=80;BaseQRankSum=1.251;DP=214;Dels=0.00;FS=4.162;HRun=0;HaplotypeScore=0.4639;InbreedingCoeff=-0.0726;MQ=57.26;MQ0=0;MQRankSum=1.028;QD=12.14;ReadPosRankSum=-0.820 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,71 0/0:4,0:4:9.03:0,9,110 0/0:5,0:5:15.04:0,15,173 0/0:10,0:10:30.08:0,30,357 0/0:10,0:10:27.08:0,27,335 0/1:1,4:5:24.09:101,0,24 0/1:3,3:6:93.07:93,0,93 0/0:5,0:5:12.04:0,12,153 0/0:4,0:4:9.02:0,9,97 0/0:3,0:3:9.01:0,9,101 0/0:6,0:6:15.05:0,15,184 0/0:2,0:2:6.02:0,6,69 0/0:7,0:7:21.06:0,21,242 0/0:10,0:10:21.06:0,21,256 0/0:16,0:16:45.13:0,45,542 0/0:6,0:6:15.04:0,15,172 0/0:4,0:4:9.02:0,9,99 0/0:4,0:4:9.03:0,9,106 0/0:2,0:2:5.99:0,6,60 0/0:11,0:11:30.08:0,30,347 0/0:10,0:10:27.08:0,27,339 0/0:3,0:3:9.03:0,9,112 0/0:4,0:4:12.04:0,12,160 0/0:3,0:3:6.02:0,6,82 0/0:2,0:2:3.01:0,3,37 0/0:6,0:6:15.02:0,15,173 0/0:1,0:1:3.01:0,3,38 ./. 0/0:4,0:4:12.03:0,12,138 0/0:10,0:10:30.07:0,30,325 0/0:4,0:4:9.03:0,9,110 0/0:7,0:7:15.04:0,15,180 0/0:5,0:5:12.03:0,12,133 0/0:4,0:4:12.03:0,12,128 0/0:4,0:4:9.03:0,9,105 ./. 0/0:7,0:7:21.06:0,21,245 0/0:2,0:2:6.01:0,6,57 0/0:5,0:5:12.03:0,12,132 0/0:3,0:3:6.02:0,6,76 0/0:2,0:2:6.02:0,6,69 0/0:5,0:5:15.04:0,15,180 17 17719995 . G C 265.36 . 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A G 1394.23 . 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T TG 32.72 . 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G A 5346.27 . 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A G 56361.27 . 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G A 31975.27 . 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G T 215.71 . 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T G 2438.04 . 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G T 3.92 . 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C T 899.79 . 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G A 900.06 . AC=9;AF=0.107;AN=84;BaseQRankSum=8.830;DP=3194;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3686;InbreedingCoeff=-0.1269;MQ=12.31;MQ0=2634;MQRankSum=-0.932;QD=1.05;ReadPosRankSum=0.310 GT:AD:DP:GQ:PL 0/0:55,0:55:6.02:0,6,65 0/0:76,0:76:21.05:0,21,221 0/1:55,11:66:50.30:50,0,371 0/1:104,36:140:99:196,0,414 0/1:86,25:111:99:261,0,121 0/1:110,25:136:64.56:65,0,554 0/1:80,20:100:99:213,0,271 0/0:54,0:54:27.07:0,27,297 0/1:75,16:91:28.37:28,0,343 0/1:51,15:66:61.23:61,0,267 0/0:77,0:77:45.11:0,45,482 0/0:83,0:83:42.10:0,42,445 0/0:65,0:65:27.07:0,27,293 0/1:61,15:76:91.22:91,0,511 0/0:194,0:196:51.12:0,51,536 0/1:57,17:74:61.22:61,0,268 0/0:56,0:57:21.04:0,21,215 0/0:64,0:64:33.07:0,33,343 0/0:70,0:70:36.09:0,36,385 0/0:156,0:156:96.24:0,96,1033 0/0:89,0:90:42.11:0,42,452 0/0:63,0:63:39.09:0,39,407 0/0:145,0:145:45.13:0,45,504 0/0:62,0:62:33.08:0,33,356 0/0:59,0:59:15.04:0,15,163 0/0:69,0:69:21.06:0,21,234 0/0:56,0:56:9.02:0,9,93 0/0:33,0:33:21.03:0,21,213 0/0:72,0:72:42.10:0,42,442 0/0:58,0:58:27.06:0,27,283 0/0:45,0:45:12.03:0,12,125 0/0:75,0:75:51.11:0,51,531 0/0:81,0:81:27.06:0,27,277 0/0:57,0:57:51.08:0,51,517 0/0:47,1:48:27.06:0,27,286 0/0:76,0:76:42.10:0,42,442 0/0:45,0:45:36.08:0,36,376 0/0:37,0:37:18.05:0,18,193 0/0:42,0:42:30.06:0,30,312 0/0:57,0:58:33.08:0,33,348 0/0:80,0:80:42.10:0,42,444 0/0:30,0:30:30.08:0,30,321 17 18397546 . G C 328.87 . AC=5;AF=0.071;AN=70;BaseQRankSum=0.782;DP=7557;DS;Dels=0.00;FS=32.339;HRun=0;HaplotypeScore=0.2629;InbreedingCoeff=0.0720;MQ=4.31;MQ0=7077;MQRankSum=3.010;QD=0.34;ReadPosRankSum=-1.461 GT:AD:DP:GQ:PL 0/0:143,0:143:9:0,9,80 0/0:174,0:174:8.99:0,9,77 0/0:197,0:197:6.01:0,6,56 ./. ./. 0/0:241,0:241:9:0,9,80 0/1:160,65:225:17.41:170,0,17 0/0:123,0:123:3.01:0,3,33 0/0:216,0:216:3:0,3,27 0/0:220,0:221:8.99:0,9,77 0/0:202,0:202:27.02:0,27,250 0/0:207,0:207:23.99:0,24,217 0/1:89,48:137:0.98:47,6,0 0/0:214,0:214:15:0,15,133 0/1:167,83:250:11.67:100,0,12 0/1:145,53:198:50.08:50,0,85 0/1:108,52:160:56.06:56,0,59 0/0:142,0:142:8.99:0,9,77 0/0:244,0:247:9:0,9,80 0/0:249,0:250:21:0,21,188 0/0:247,0:250:24.01:0,24,229 0/0:172,0:173:9.01:0,9,87 0/0:242,1:244:11.99:0,12,104 ./. ./. 0/0:165,0:165:9:0,9,90 0/0:124,0:124:15:0,15,133 ./. 0/0:193,0:193:27:0,27,237 0/0:165,0:165:18:0,18,157 ./. 0/0:201,0:201:17.98:0,18,156 0/0:232,1:233:9:0,9,80 0/0:172,0:172:27.01:0,27,240 0/0:147,0:147:18.01:0,18,171 0/0:229,0:229:26.98:0,27,232 0/0:162,0:162:3.01:0,3,30 ./. 0/0:104,1:105:2.99:0,3,24 0/0:124,0:124:3:0,3,27 0/0:191,1:192:21:0,21,184 0/0:88,0:89:6:0,6,54 17 18397599 . A G 14.56 . AC=1;AF=0.014;AN=72;BaseQRankSum=3.386;DP=6266;DS;Dels=0.00;FS=5.773;HRun=0;HaplotypeScore=0.5360;InbreedingCoeff=-0.0822;MQ=5.25;MQ0=5645;MQRankSum=1.585;QD=0.11;ReadPosRankSum=0.302 GT:AD:DP:GQ:PL 0/0:137,0:137:5.99:0,6,50 0/0:133,0:136:2.99:0,3,24 0/0:157,1:160:6:0,6,51 ./. 0/0:147,0:148:2.99:0,3,24 0/0:201,0:205:11.98:0,12,100 0/0:180,0:182:20.97:0,21,176 ./. 0/0:175,0:176:6:0,6,58 0/0:170,0:172:2.99:0,3,24 0/0:166,0:166:24:0,24,214 0/0:185,2:187:11.99:0,12,104 0/0:105,0:106:11.99:0,12,102 0/0:178,0:180:8.99:0,9,77 0/0:245,0:250:33.02:0,33,304 0/0:172,0:172:27.02:0,27,251 0/0:132,0:134:5.99:0,6,50 0/0:126,2:129:8.99:0,9,75 0/0:194,0:197:18.01:0,18,160 0/0:245,1:250:15.01:0,15,138 0/0:174,0:179:18.03:0,18,177 0/0:154,0:155:9.01:0,9,86 0/0:207,0:207:5.99:0,6,50 ./. 0/0:109,0:109:6.02:0,6,70 0/0:110,1:111:2.99:0,3,24 0/0:104,0:106:5.99:0,6,49 ./. 0/0:147,0:149:9:0,9,80 0/0:125,0:127:3:0,3,27 ./. 0/0:161,1:164:14.98:0,15,126 0/0:226,0:227:21:0,21,189 0/0:122,0:122:12.01:0,12,108 0/1:97,37:134:43.13:59,0,43 0/0:170,1:172:3:0,3,27 0/0:133,0:134:8.98:0,9,73 ./. 0/0:92,0:92:2.99:0,3,24 0/0:119,0:121:15.01:0,15,145 0/0:159,0:159:14.99:0,15,127 0/0:84,0:84:9:0,9,80 17 18542519 . T G 28296.70 . AC=32;AF=0.381;AN=84;BaseQRankSum=-16.889;DP=5933;DS;Dels=0.00;FS=55.977;HRun=0;HaplotypeScore=3.5077;InbreedingCoeff=-0.5144;MQ=31.57;MQ0=305;MQRankSum=-0.711;QD=6.74;ReadPosRankSum=-0.881 GT:AD:DP:GQ:PL 0/1:100,40:140:99:578,0,2171 0/1:124,49:173:99:861,0,2698 0/1:127,43:170:99:650,0,2806 0/0:136,1:138:99:0,284,3626 0/0:178,0:178:99:0,433,4573 0/1:133,33:167:99:470,0,2946 0/1:101,28:129:99:436,0,2364 0/0:145,0:146:99:0,346,3840 0/1:83,31:115:99:572,0,1812 0/1:75,45:120:99:758,0,1724 0/1:33,90:124:99:1868,0,493 0/1:74,50:124:99:951,0,1496 0/1:105,28:133:99:362,0,2225 0/1:91,36:127:99:620,0,1883 0/1:150,86:236:99:1440,0,2966 0/1:139,33:172:99:416,0,2919 0/1:92,53:145:99:914,0,2045 0/1:69,40:109:99:787,0,1541 0/1:62,50:112:99:910,0,1149 0/1:73,149:222:99:3254,0,1218 0/1:123,58:181:99:866,0,2735 0/1:94,33:127:99:579,0,2103 0/1:142,59:203:99:886,0,3154 0/0:89,1:90:99:0,210,2264 0/1:53,32:85:99:579,0,1101 0/1:64,27:91:99:431,0,1303 0/1:77,19:96:99:276,0,1598 0/0:116,0:116:99:0,291,3063 1/1:4,66:70:99:1708,171,0 0/1:114,37:151:99:522,0,2550 0/0:161,1:162:99:0,430,4414 0/0:237,1:239:99:0,547,5964 0/1:46,65:111:99:1417,0,851 0/1:78,35:113:99:637,0,1665 0/1:82,36:118:99:559,0,1909 0/1:47,96:143:99:1941,0,786 0/0:230,0:230:99:0,547,5685 0/0:186,3:189:99:0,438,4784 0/0:149,0:149:99:0,382,3843 0/1:57,36:93:99:620,0,1192 0/1:27,69:96:99:1428,0,418 0/0:98,1:99:99:0,225,2466 17 18544392 . T C 136.23 . AC=7;AF=0.125;AN=56;BaseQRankSum=4.102;DP=2643;Dels=0.00;FS=2.409;HRun=2;HaplotypeScore=0.0692;InbreedingCoeff=-0.0155;MQ=3.92;MQ0=2587;MQRankSum=2.118;QD=0.49;ReadPosRankSum=0.563 GT:AD:DP:GQ:PL ./. ./. 1/1:29,10:39:3.01:39,3,0 ./. 0/0:73,0:73:3.01:0,3,33 ./. ./. ./. 0/0:47,12:59:3:0,3,27 ./. 1/1:44,13:57:3.01:38,3,0 ./. 0/0:44,0:44:3.01:0,3,33 0/0:56,0:56:3.01:0,3,33 ./. 0/0:56,0:56:3.01:0,3,33 0/0:37,17:54:3:0,3,27 0/0:33,8:41:3.01:0,3,33 0/0:82,0:82:3.01:0,3,30 0/0:101,0:101:9.02:0,9,100 0/1:60,14:74:23.61:32,0,24 0/0:39,14:53:3:0,3,27 0/0:88,0:88:3.01:0,3,35 ./. 0/0:63,1:64:6.01:0,6,64 ./. ./. 0/0:73,0:73:3.01:0,3,33 0/1:43,8:51:24.41:67,0,24 ./. 0/0:41,0:41:3:0,3,29 ./. 0/0:50,0:50:9.02:0,9,99 0/0:42,0:42:6.02:0,6,67 0/0:62,1:63:6.02:0,6,67 0/0:51,0:51:6.01:0,6,58 0/0:75,0:75:6:0,6,53 0/0:39,1:40:6.01:0,6,60 0/0:39,0:39:6.01:0,6,64 0/1:41,17:59:24.42:44,0,24 0/0:49,8:57:3.01:0,3,32 0/0:62,2:64:3.01:0,3,33 17 18634541 . C T 11354 . AC=12;AF=0.143;AN=84;BaseQRankSum=-25.720;DP=5611;DS;Dels=0.00;FS=15.238;HRun=0;HaplotypeScore=2.1383;InbreedingCoeff=0.0278;MQ=34.30;MQ0=499;MQRankSum=0.927;QD=11.19;ReadPosRankSum=-1.570 GT:AD:DP:GQ:PL 0/0:88,0:88:99:0,219,2354 0/0:104,0:104:99:0,237,2596 0/1:63,44:107:99:876,0,1090 0/0:221,0:221:99:0,481,5398 0/0:226,0:226:99:0,541,6326 0/0:223,0:223:99:0,520,5906 0/0:211,0:211:99:0,511,5709 0/0:192,0:192:99:0,460,5325 1/1:3,83:86:99:2130,198,0 0/1:51,38:89:99:852,0,1022 0/1:56,52:108:99:1161,0,1089 0/1:52,44:96:99:895,0,1050 0/1:53,45:98:99:996,0,985 0/0:95,0:95:99:0,213,2339 0/0:241,0:241:99:0,541,6017 0/0:94,0:94:99:0,213,2243 0/0:106,0:106:99:0,243,2654 0/1:59,42:101:99:846,0,1195 0/0:171,0:171:99:0,391,4265 0/0:170,0:170:99:0,397,4405 0/0:156,0:157:99:0,364,4074 0/1:47,37:84:99:794,0,978 0/0:236,1:238:99:0,526,6005 0/0:231,0:232:99:0,463,5351 0/0:222,0:222:99:0,502,5686 0/0:218,1:219:99:0,446,5367 0/0:68,0:68:99:0,153,1650 0/0:94,0:94:99:0,216,2373 0/1:29,34:63:99:770,0,670 0/0:100,0:101:99:0,246,2662 0/0:89,0:89:99:0,213,2350 0/0:144,0:144:99:0,325,3685 0/0:110,0:110:99:0,283,3019 0/1:39,49:88:99:1073,0,611 0/1:48,45:94:99:961,0,1043 0/0:129,0:129:99:0,319,3444 0/0:155,0:155:99:0,352,3923 0/0:108,0:108:99:0,246,2699 0/0:95,0:95:99:0,234,2546 0/0:103,0:103:99:0,259,2837 0/0:82,1:83:99:0,156,2022 0/0:107,0:107:99:0,264,2861 17 18654358 . A G 6346.39 . AC=2;AF=0.024;AN=84;BaseQRankSum=14.525;DP=7936;DS;Dels=0.00;FS=2.641;HRun=1;HaplotypeScore=9.0829;InbreedingCoeff=-0.0244;MQ=45.06;MQ0=36;MQRankSum=2.458;QD=13.11;ReadPosRankSum=-1.428 GT:AD:DP:GQ:PL 0/0:187,0:188:99:0,484,5632 0/0:172,0:172:99:0,460,5293 0/0:124,0:125:99:0,337,3832 0/0:249,1:250:99:0,689,8169 0/0:238,0:238:99:0,641,7764 0/1:127,112:240:99:2967,0,3232 0/1:123,121:244:99:3379,0,3040 0/0:229,0:229:99:0,583,6995 0/0:178,0:178:99:0,469,5299 0/0:141,1:142:99:0,370,4255 0/0:172,1:177:99:0,445,5077 0/0:143,0:143:99:0,379,4337 0/0:160,0:160:99:0,412,4753 0/0:167,0:167:99:0,448,4951 0/0:250,0:250:99:0,665,7758 0/0:133,0:135:99:0,346,3993 0/0:167,2:169:99:0,355,4740 0/0:138,1:139:99:0,364,4169 0/0:227,1:228:99:0,574,6723 0/0:245,1:246:99:0,617,7293 0/0:221,1:222:99:0,574,6657 0/0:217,0:217:99:0,550,6452 0/0:245,0:245:99:0,662,7922 0/0:234,0:235:99:0,581,7032 0/0:229,0:229:99:0,605,7170 0/0:243,0:243:99:0,617,7467 0/0:127,0:127:99:0,340,4000 0/0:161,0:161:99:0,424,4748 0/0:142,0:143:99:0,376,4357 0/0:156,0:156:99:0,409,4784 0/0:131,0:131:99:0,343,4005 0/0:241,2:243:99:0,617,7379 0/0:228,0:228:99:0,601,6944 0/0:156,0:156:99:0,418,4809 0/0:156,0:156:99:0,418,4823 0/0:202,0:202:99:0,550,6231 0/0:227,1:228:99:0,580,6740 0/0:176,0:176:99:0,451,5205 0/0:144,1:145:99:0,385,4424 0/0:171,1:172:99:0,469,5354 0/0:136,0:137:99:0,358,4124 0/0:163,0:163:99:0,427,4834 17 18661795 . C T 160.91 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.254;DP=3230;DS;Dels=0.00;FS=1.228;HRun=0;HaplotypeScore=0.6023;InbreedingCoeff=-0.0121;MQ=19.94;MQ0=1450;MQRankSum=0.617;QD=2.44;ReadPosRankSum=-1.075 GT:AD:DP:GQ:PL 0/1:47,19:66:99:207,0,391 0/0:81,0:81:84.14:0,84,878 0/0:64,0:64:69.08:0,69,676 0/0:102,0:103:99:0,129,1309 0/0:95,0:95:99:0,135,1404 0/0:111,0:111:99:0,114,1172 0/0:93,0:93:99:0,135,1343 0/0:71,0:72:69.09:0,69,694 0/0:51,0:51:51.06:0,51,493 0/0:40,0:40:45.05:0,45,436 0/0:59,1:60:32.42:0,32,539 0/0:63,0:63:54.07:0,54,529 0/0:55,0:55:81.15:0,81,872 0/0:57,0:57:51.10:0,51,538 0/0:220,0:220:99:0,291,3005 0/0:46,0:46:54.06:0,54,513 0/0:64,0:64:78.10:0,78,766 0/0:49,0:49:24.05:0,24,261 0/0:112,0:112:99:0,132,1372 0/0:128,0:129:99:0,171,1724 0/0:140,0:140:99:0,177,1806 0/0:86,0:86:99:0,111,1073 0/0:90,0:91:99:0,99,981 0/0:61,0:61:60.08:0,60,591 0/0:73,0:73:69.10:0,69,703 0/0:54,0:55:69.10:0,69,693 0/0:58,0:58:57.07:0,57,549 0/0:58,0:58:63.08:0,63,621 0/0:49,0:49:39.05:0,39,376 0/0:65,0:65:72.10:0,72,719 0/0:51,0:51:45.08:0,45,467 0/0:104,0:104:99:0,102,1050 0/0:76,0:76:81.10:0,81,814 0/0:67,0:67:72.09:0,72,702 0/0:55,0:55:54.08:0,54,542 0/0:78,0:78:99:0,105,1041 0/0:116,0:116:99:0,147,1546 0/0:93,0:93:99:0,114,1096 0/0:62,0:63:78.09:0,78,767 0/0:57,0:57:51.06:0,51,490 0/0:40,0:40:39.06:0,39,392 0/0:63,0:63:66.11:0,66,696 17 18775900 . A G 122094.18 . AC=44;AF=0.524;AN=84;BaseQRankSum=-35.708;DP=7946;DS;Dels=0.00;FS=46.298;HRun=0;HaplotypeScore=3.1845;InbreedingCoeff=-0.0500;MQ=59.63;MQ0=0;MQRankSum=1.363;QD=19.57;ReadPosRankSum=1.112 GT:AD:DP:GQ:PL 0/1:81,78:159:99:1939,0,2281 1/1:0,168:169:99:5160,457,0 0/1:88,68:156:99:1641,0,2442 0/1:132,118:250:99:3350,0,3983 0/0:250,0:250:99:0,701,8816 1/1:0,250:250:99:8736,722,0 0/1:125,125:250:99:3628,0,3845 1/1:1,249:250:99:8501,672,0 0/0:172,0:172:99:0,469,5812 0/1:81,76:157:99:1889,0,2329 0/1:71,65:137:99:1624,0,2076 0/0:163,0:163:99:0,442,5497 0/0:161,0:161:99:0,433,5384 0/1:80,62:142:99:1541,0,2361 0/0:250,0:250:99:0,710,8566 0/0:113,0:113:99:0,316,3878 0/0:181,3:184:99:0,422,6151 0/1:77,83:160:99:2078,0,2341 0/1:127,123:250:99:3048,0,3378 0/0:248,1:250:99:0,652,8370 0/1:134,115:250:99:2902,0,3841 0/1:78,74:152:99:1897,0,2254 1/1:0,250:250:99:8807,728,0 1/1:0,250:250:99:8653,716,0 0/1:124,126:250:99:3663,0,3658 1/1:2,247:250:99:8579,678,0 1/1:0,122:122:99:3872,352,0 0/1:76,90:166:99:2295,0,2123 0/1:72,76:148:99:1978,0,2056 0/0:163,0:163:99:0,457,5612 0/1:82,76:158:99:1935,0,2363 0/1:129,121:250:99:3088,0,3674 0/1:93,80:173:99:1965,0,2664 0/1:88,65:153:99:1625,0,2646 0/1:75,74:149:99:1887,0,2043 1/1:0,155:155:99:4836,436,0 0/1:130,120:250:99:2985,0,3514 0/1:91,69:160:99:1668,0,2649 1/1:1,152:153:99:4584,380,0 1/1:0,168:168:99:5200,469,0 1/1:2,157:159:99:4815,374,0 0/1:76,68:144:99:1723,0,2331 17 18814544 . A C 249.37 . AC=4;AF=0.048;AN=84;BaseQRankSum=-14.325;DP=2784;Dels=0.00;FS=312.733;HRun=4;HaplotypeScore=4.7597;InbreedingCoeff=-0.0699;MQ=58.85;MQ0=0;MQRankSum=2.567;QD=1.02;ReadPosRankSum=-12.728 GT:AD:DP:GQ:PL 0/1:30,12:42:52.25:52,0,753 0/0:34,5:39:90.20:0,90,981 0/0:32,11:43:1.04:6,0,695 0/0:118,55:174:69.81:0,70,2829 0/0:81,57:139:91.10:0,91,2118 0/0:83,32:115:99:0,137,1971 0/0:59,23:82:95.89:0,96,1477 0/0:65,22:89:99:0,120,1607 0/0:47,12:59:99:0,120,1341 0/0:34,12:47:65.46:0,65,899 0/0:32,8:40:18.93:0,19,731 0/0:25,10:36:36.47:0,36,643 0/0:29,9:38:2.66:1,0,763 0/0:31,5:36:72.13:0,72,780 0/0:138,45:186:99:0,142,3288 0/0:24,8:32:23.99:0,24,574 0/0:36,12:48:98.69:0,99,1098 0/0:29,7:36:16.45:0,16,707 0/1:51,23:74:99:155,0,1136 0/0:65,12:77:98.01:0,98,1598 0/0:43,16:59:12.82:0,13,1030 0/0:46,18:64:65.58:0,66,1210 0/0:97,51:149:99:0,152,2266 0/0:61,16:78:84.20:0,84,1468 0/0:78,17:95:99:0,189,2030 0/0:57,11:69:99:0,141,1482 0/0:41,8:49:80.56:0,81,1108 0/0:36,8:45:33.47:0,33,1007 0/0:34,10:44:93.19:0,93,1012 0/1:40,13:53:32.54:33,0,934 0/0:34,11:46:60.96:0,61,888 0/0:79,19:99:99:0,168,2150 0/0:48,11:59:99:0,126,1311 0/0:37,8:45:50.59:0,51,847 0/0:33,11:44:48.53:0,49,782 0/0:47,12:59:52.23:0,52,1136 0/1:55,20:75:94.89:95,0,1437 0/0:44,10:54:99:0,102,1126 0/0:36,2:39:84.15:0,84,900 0/0:26,12:38:11.27:0,11,658 0/0:36,9:45:70.55:0,71,1044 0/0:37,6:43:96.23:0,96,1050 17 18965266 . G A 26.41 . AC=1;AF=0.029;AN=34;BaseQRankSum=0.959;DP=2985;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0863;InbreedingCoeff=0.1613;MQ=3.61;MQ0=2861;MQRankSum=1.811;QD=0.20;ReadPosRankSum=0.046 GT:AD:DP:GQ:PL ./. ./. 0/0:55,0:55:6.02:0,6,67 0/0:73,0:73:6.02:0,6,67 ./. 0/0:96,0:96:15.04:0,15,167 0/0:53,0:53:6.02:0,6,67 0/0:86,0:86:6.02:0,6,67 ./. 0/0:66,0:66:6.02:0,6,67 ./. 0/0:45,0:45:3.01:0,3,33 ./. ./. ./. ./. 0/0:11,0:11:3:0,3,28 ./. 0/0:112,0:113:3:0,3,28 0/0:149,0:150:21.06:0,21,230 ./. ./. 0/0:86,0:87:3.01:0,3,33 ./. 0/1:110,25:135:0.97:73,6,0 ./. ./. ./. 0/0:36,0:36:3.01:0,3,33 ./. ./. 0/0:126,0:126:3.01:0,3,33 ./. ./. ./. ./. 0/0:211,0:211:12.04:0,12,143 ./. 0/0:81,0:81:3.01:0,3,39 ./. ./. 0/0:64,0:64:6.01:0,6,61 17 18965302 . C A 1084.58 . AC=23;AF=0.411;AN=56;BaseQRankSum=-5.965;DP=3971;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0643;InbreedingCoeff=0.4256;MQ=4.95;MQ0=3763;MQRankSum=-6.552;QD=0.86;ReadPosRankSum=3.111 GT:AD:DP:GQ:PL ./. 1/1:71,22:94:6.02:67,6,0 0/1:60,18:79:24.41:58,0,24 0/0:66,15:81:18.05:0,18,200 ./. 1/1:78,38:116:18.05:201,18,0 1/1:39,39:78:6.02:67,6,0 0/0:83,12:95:6.02:0,6,65 ./. 0/0:73,8:81:15.04:0,15,167 ./. 1/1:22,24:46:6.02:67,6,0 ./. ./. ./. 1/1:34,39:73:6.02:67,6,0 0/0:2,0:3:3:0,3,28 ./. 0/0:165,11:176:3:0,3,28 0/1:186,49:235:94.63:255,0,95 0/0:115,11:126:9.03:0,9,102 ./. 0/0:94,35:129:6.02:0,6,67 0/0:238,8:246:3.01:0,3,33 0/0:203,10:213:12.03:0,12,138 ./. ./. ./. 0/0:36,19:55:9.02:0,9,100 1/1:27,27:55:6.02:67,6,0 0/1:20,12:32:1.76:33,3,0 0/1:176,19:195:18.39:18,0,125 1/1:0,23:23:9.02:100,9,0 1/1:59,22:81:6.02:67,6,0 ./. 1/1:18,32:50:9.02:96,9,0 0/0:230,17:247:27.08:0,27,312 0/0:158,18:176:9.02:0,9,100 0/1:66,38:104:73.23:73,0,174 0/0:117,4:121:9.02:0,9,100 ./. 0/0:59,17:76:6.01:0,6,61 17 18965339 . G A 324.60 . AC=1;AF=0.015;AN=68;BaseQRankSum=-3.026;DP=6408;DS;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.9025;InbreedingCoeff=-0.0614;MQ=5.30;MQ0=6171;MQRankSum=0.933;QD=1.30;ReadPosRankSum=-1.223 GT:AD:DP:GQ:PL ./. 0/0:136,0:136:15.04:0,15,167 0/0:124,0:124:24.07:0,24,267 0/0:210,0:210:24.07:0,24,267 ./. 0/0:236,0:236:30.09:0,30,346 0/0:182,0:184:30.07:0,30,325 0/0:159,0:159:6.02:0,6,73 0/0:68,0:68:3.01:0,3,33 0/0:101,0:101:24.07:0,24,267 ./. 0/0:94,0:94:9.02:0,9,100 ./. 0/0:95,1:97:3.01:0,3,33 ./. 0/0:133,0:133:6.02:0,6,67 ./. ./. 0/0:244,0:244:21.06:0,21,245 0/1:209,41:250:99:369,0,356 0/0:209,0:209:18.05:0,18,205 ./. 0/0:250,0:250:15.04:0,15,167 0/0:247,0:247:15.04:0,15,167 0/0:250,0:250:6.02:0,6,67 0/0:244,0:244:12.03:0,12,128 0/0:90,0:90:9.02:0,9,96 0/0:118,0:118:3.01:0,3,33 0/0:101,0:101:15.04:0,15,172 0/0:150,0:150:18.05:0,18,201 0/0:116,0:116:6.02:0,6,67 0/0:250,0:250:24.06:0,24,263 0/0:100,0:100:15.04:0,15,169 0/0:125,0:125:15.04:0,15,167 0/0:94,0:94:3.01:0,3,33 0/0:107,0:107:24.06:0,24,264 0/0:235,0:235:30.09:0,30,347 0/0:198,0:198:15.04:0,15,167 0/0:162,0:162:45.12:0,45,501 0/0:155,0:155:12.03:0,12,134 0/0:97,0:97:9.03:0,9,105 0/0:122,0:122:9.02:0,9,100 17 18965341 . C T 109.33 . AC=2;AF=0.029;AN=68;BaseQRankSum=-0.454;DP=6465;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9255;InbreedingCoeff=0.2010;MQ=5.37;MQ0=6224;MQRankSum=-0.860;QD=0.65;ReadPosRankSum=1.296 GT:AD:DP:GQ:PL ./. 0/0:135,0:138:15.04:0,15,164 0/0:123,0:123:21.06:0,21,234 0/0:206,0:207:21.06:0,21,234 ./. 0/0:244,0:244:33.09:0,33,379 0/0:192,0:192:36.07:0,36,378 0/0:159,0:160:6.02:0,6,73 0/1:49,20:69:1.76:33,3,0 0/1:83,16:100:76.24:138,0,76 ./. 0/0:97,0:97:9.02:0,9,100 ./. 0/0:100,0:100:3.01:0,3,33 ./. 0/0:133,0:134:6.01:0,6,64 ./. ./. 0/0:243,0:249:21.03:0,21,229 0/0:249,0:250:75.21:0,75,842 0/0:209,0:210:18.05:0,18,203 ./. 0/0:248,0:250:15.04:0,15,167 0/0:249,0:250:18.05:0,18,201 0/0:247,0:248:9.02:0,9,100 0/0:243,0:243:12.03:0,12,134 0/0:92,0:92:9.02:0,9,100 0/0:125,0:125:3.01:0,3,33 0/0:103,0:103:18.05:0,18,205 0/0:150,0:151:18.05:0,18,201 0/0:119,0:119:6.02:0,6,67 0/0:248,1:249:27.07:0,27,289 0/0:98,0:98:12.03:0,12,136 0/0:127,0:127:15.04:0,15,164 0/0:101,0:101:3.01:0,3,33 0/0:109,0:110:24.06:0,24,264 0/0:226,2:229:30.08:0,30,338 0/0:197,0:197:21.06:0,21,234 0/0:162,0:162:51.14:0,51,571 0/0:153,0:155:12.02:0,12,121 0/0:100,0:100:15.04:0,15,168 0/0:119,0:119:9.02:0,9,100 17 18965348 . C T 1827.41 . AC=11;AF=0.162;AN=68;BaseQRankSum=-6.920;DP=6733;DS;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.8524;InbreedingCoeff=0.3993;MQ=5.61;MQ0=6481;MQRankSum=1.158;QD=1.42;ReadPosRankSum=-0.186 GT:AD:DP:GQ:PL ./. 0/0:149,0:150:21.06:0,21,234 0/0:122,0:122:24.06:0,24,264 0/0:223,0:224:24.07:0,24,267 ./. 0/1:127,118:245:55.18:361,0,55 0/1:115,95:210:99:259,0,140 0/0:170,1:172:6.02:0,6,72 0/1:58,18:76:1.76:33,3,0 0/1:84,12:96:55.75:143,0,56 ./. 0/0:111,0:111:9.02:0,9,100 ./. 0/0:107,1:108:3.01:0,3,33 ./. 0/0:146,0:146:9.02:0,9,100 ./. ./. 0/0:247,1:248:21.06:0,21,245 0/1:151,97:248:99:640,0,147 0/0:210,0:212:15.04:0,15,172 ./. 0/0:250,0:250:15.04:0,15,167 0/0:245,0:245:15.03:0,15,160 0/0:246,0:246:6.01:0,6,62 0/0:248,0:248:15.04:0,15,167 0/0:104,1:105:9.02:0,9,100 0/0:140,0:140:3.01:0,3,33 0/0:107,4:111:27.08:0,27,305 1/1:78,89:167:27.06:292,27,0 1/1:117,15:132:9.02:100,9,0 0/0:249,1:250:24.07:0,24,267 1/1:14,96:110:12.03:137,12,0 0/0:132,0:132:30.08:0,30,334 0/0:97,0:97:3.01:0,3,33 0/0:119,0:119:24.07:0,24,271 0/0:239,1:241:36.09:0,36,404 0/0:198,0:198:27.07:0,27,300 0/0:169,0:170:42.12:0,42,473 0/0:156,1:157:21.06:0,21,234 0/0:100,0:100:12.03:0,12,139 0/0:131,0:131:15.04:0,15,167 17 18965349 . T G 84.71 . AC=2;AF=0.029;AN=68;BaseQRankSum=1.043;DP=6795;DS;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.8861;InbreedingCoeff=-0.0703;MQ=5.60;MQ0=6543;MQRankSum=0.800;QD=0.18;ReadPosRankSum=-0.678 GT:AD:DP:GQ:PL ./. 0/0:153,0:153:21.06:0,21,234 0/0:123,0:123:24.06:0,24,264 0/0:226,0:226:27.07:0,27,301 ./. 0/1:217,30:247:85.60:86,0,364 0/1:188,25:213:58.74:59,0,344 0/0:171,0:171:6.02:0,6,71 0/0:76,0:76:3.01:0,3,33 0/0:97,0:97:21.06:0,21,233 ./. 0/0:111,0:112:9.02:0,9,100 ./. 0/0:108,0:108:3.01:0,3,33 ./. 0/0:147,1:148:9.02:0,9,100 ./. ./. 0/0:245,0:245:21.06:0,21,243 0/0:249,1:250:78.20:0,78,860 0/0:211,1:212:15.04:0,15,172 ./. 0/0:249,1:250:15.04:0,15,167 0/0:247,0:247:15.04:0,15,166 0/0:244,0:244:6.02:0,6,67 0/0:247,0:248:15.04:0,15,167 0/0:106,0:106:9.02:0,9,100 0/0:140,0:140:3.01:0,3,33 0/0:113,0:113:30.08:0,30,336 0/0:168,1:170:24.07:0,24,267 0/0:133,0:134:9.02:0,9,95 0/0:250,0:250:30.08:0,30,335 0/0:114,0:114:12.03:0,12,137 0/0:132,0:132:30.08:0,30,334 0/0:98,0:98:3.01:0,3,33 0/0:119,0:119:27.08:0,27,305 0/0:241,0:242:39.10:0,39,437 0/0:202,0:202:27.07:0,27,301 0/0:171,0:171:42.12:0,42,472 0/0:157,1:161:21.06:0,21,231 0/0:96,0:105:12.03:0,12,138 0/0:131,0:132:15.04:0,15,167 17 18965360 . G C 1765.06 . AC=11;AF=0.162;AN=68;BaseQRankSum=-2.699;DP=7146;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5050;InbreedingCoeff=0.6606;MQ=5.85;MQ0=6861;MQRankSum=1.533;QD=1.48;ReadPosRankSum=0.779 GT:AD:DP:GQ:PL ./. 0/0:155,0:155:18.05:0,18,201 0/0:119,0:120:27.07:0,27,297 0/0:249,0:250:33.09:0,33,368 ./. 0/1:213,36:249:99:122,0,301 0/0:205,38:243:8.67:0,9,398 0/0:187,0:187:12.03:0,12,140 0/1:62,29:95:0.51:100,9,0 1/1:90,13:110:15:148,15,0 ./. 0/0:142,0:142:18.04:0,18,194 ./. 0/0:119,0:119:9.03:0,9,103 ./. 0/0:149,1:151:9.02:0,9,100 ./. ./. 0/0:239,0:239:24.07:0,24,279 0/1:130,120:250:99:782,0,102 0/0:215,0:220:18.05:0,18,206 ./. 0/0:247,0:247:21.03:0,21,222 0/0:236,0:236:15.04:0,15,167 0/0:238,0:239:12.03:0,12,134 0/0:249,0:250:15.04:0,15,167 0/0:116,0:116:12.03:0,12,134 0/0:149,0:149:3.01:0,3,33 0/0:114,0:114:36.10:0,36,404 1/1:84,104:188:39.09:422,39,0 1/1:141,21:162:15.03:170,15,0 0/0:249,0:249:30.08:0,30,334 1/1:19,116:135:15.04:173,15,0 0/0:130,0:130:27.07:0,27,300 0/0:107,0:107:3.01:0,3,33 0/0:138,0:139:33.07:0,33,357 0/0:245,0:248:48.14:0,48,544 0/0:208,0:208:27.07:0,27,301 0/0:179,0:179:36.10:0,36,406 0/0:161,0:161:21.06:0,21,230 0/0:107,0:107:12.03:0,12,139 0/0:141,0:141:15.04:0,15,167 17 18965363 . T C 154.47 . AC=2;AF=0.029;AN=68;BaseQRankSum=-0.883;DP=7173;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.4489;InbreedingCoeff=0.6891;MQ=5.81;MQ0=6890;MQRankSum=-1.356;QD=0.74;ReadPosRankSum=0.787 GT:AD:DP:GQ:PL ./. 0/0:152,0:153:18.05:0,18,201 0/0:114,1:115:21.05:0,21,222 0/0:249,1:250:24.06:0,24,265 ./. 0/0:250,0:250:54.15:0,54,607 0/0:246,0:246:45.11:0,45,506 0/0:187,0:187:15.04:0,15,170 0/1:66,29:95:0.51:100,9,0 0/1:98,14:113:0.26:134,12,0 ./. 0/0:146,0:146:21.06:0,21,234 ./. 0/0:122,0:122:9.03:0,9,104 ./. 0/0:147,0:147:9.02:0,9,100 ./. ./. 0/0:239,0:241:21.06:0,21,243 0/0:248,0:249:90.22:0,90,996 0/0:214,0:215:18.05:0,18,206 ./. 0/0:250,0:250:21.06:0,21,234 0/0:239,0:240:18.05:0,18,197 0/0:248,0:248:12.03:0,12,134 0/0:249,1:250:18.05:0,18,201 0/0:116,0:116:12.03:0,12,134 0/0:146,0:146:3.01:0,3,33 0/0:113,0:113:33.09:0,33,376 0/0:192,0:192:39.11:0,39,433 0/0:159,0:160:15.04:0,15,177 0/0:250,0:250:36.07:0,36,384 0/0:140,0:140:15.04:0,15,172 0/0:132,0:132:30.08:0,30,334 0/0:108,0:108:3.01:0,3,33 0/0:141,0:141:27.08:0,27,306 0/0:246,0:249:45.13:0,45,511 0/0:203,0:203:27.07:0,27,301 0/0:180,0:180:30.08:0,30,339 0/0:160,1:161:18.05:0,18,197 0/0:107,1:108:12.03:0,12,131 0/0:139,1:140:15.04:0,15,162 17 18965409 . G T 83.15 . AC=1;AF=0.015;AN=68;BaseQRankSum=-3.843;DP=8467;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1313;InbreedingCoeff=-0.0473;MQ=5.94;MQ0=8110;MQRankSum=-0.021;QD=0.33;ReadPosRankSum=1.945 GT:AD:DP:GQ:PL ./. 0/0:198,0:199:18.05:0,18,199 0/0:181,1:182:39.10:0,39,425 0/0:237,0:237:27.07:0,27,297 ./. 0/1:227,22:250:99:127,0,426 0/0:233,13:246:0.33:11,0,468 0/0:246,1:247:24.07:0,24,273 0/0:146,0:146:33.07:0,33,356 0/0:172,0:172:45.12:0,45,494 ./. 0/0:174,0:175:21.06:0,21,234 ./. 0/0:154,0:155:12.03:0,12,133 ./. 0/0:166,0:166:18.05:0,18,201 ./. ./. 0/0:246,0:246:12.03:0,12,134 0/0:249,0:249:75.21:0,75,837 0/0:247,0:248:6.02:0,6,67 ./. 0/0:249,0:249:12.03:0,12,134 0/0:250,0:250:6.02:0,6,67 0/0:249,0:250:27.07:0,27,301 0/0:243,3:246:30.06:0,30,322 0/0:146,0:146:15.04:0,15,167 0/0:186,0:186:12.03:0,12,134 0/0:151,0:152:33.09:0,33,369 0/0:241,1:242:72.19:0,72,795 0/0:204,0:204:12.03:0,12,135 0/0:249,1:250:30.08:0,30,328 0/0:183,0:183:42.11:0,42,465 0/0:185,0:186:30.08:0,30,332 0/0:133,0:133:3.01:0,3,32 0/0:193,0:194:72.20:0,72,804 0/0:248,2:250:39.10:0,39,422 0/0:249,0:249:33.09:0,33,363 0/0:214,0:214:33.09:0,33,368 0/0:223,0:223:24.04:0,24,246 0/0:162,0:162:18.05:0,18,199 0/0:189,0:190:15.04:0,15,166 17 18965422 . G C 280.74 . AC=2;AF=0.030;AN=66;BaseQRankSum=2.961;DP=8282;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2823;InbreedingCoeff=-0.0414;MQ=5.94;MQ0=7925;MQRankSum=0.925;QD=0.59;ReadPosRankSum=0.147 GT:AD:DP:GQ:PL ./. 0/0:193,0:194:24.07:0,24,267 0/0:172,0:173:27.07:0,27,301 0/0:242,0:242:21.06:0,21,234 ./. 0/1:229,20:249:99:140,0,545 0/1:206,22:228:99:201,0,220 0/0:232,1:234:30.08:0,30,340 0/0:137,0:137:36.10:0,36,401 0/0:182,0:182:54.14:0,54,591 ./. 0/0:172,0:173:15.04:0,15,167 ./. 0/0:156,0:156:18.05:0,18,197 ./. 0/0:159,0:159:18.05:0,18,215 ./. ./. 0/0:242,0:242:15.04:0,15,164 0/0:247,0:248:75.18:0,75,816 0/0:245,0:245:12.03:0,12,133 ./. 0/0:250,0:250:15.04:0,15,167 0/0:241,0:242:9.02:0,9,100 0/0:249,0:249:33.08:0,33,359 0/0:249,0:249:30.08:0,30,331 0/0:140,0:140:18.05:0,18,201 0/0:166,0:166:18.05:0,18,201 0/0:139,0:139:21.06:0,21,238 0/0:241,0:241:66.18:0,66,731 0/0:209,0:209:6.02:0,6,67 0/0:247,0:250:24.07:0,24,267 0/0:168,0:168:39.11:0,39,435 0/0:190,0:190:33.09:0,33,368 ./. 0/0:201,0:201:63.17:0,63,702 0/0:249,0:250:33.09:0,33,365 0/0:236,0:239:36.07:0,36,389 0/0:210,0:211:27.07:0,27,293 0/0:211,0:211:27.07:0,27,301 0/0:154,0:155:21.06:0,21,234 0/0:181,0:181:12.03:0,12,134 17 19015814 . C G 420.07 . AC=8;AF=0.098;AN=82;BaseQRankSum=-1.902;DP=6980;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4197;InbreedingCoeff=0.2067;MQ=5.66;MQ0=6576;MQRankSum=-1.733;QD=0.37;ReadPosRankSum=1.074 GT:AD:DP:GQ:PL 0/0:164,0:164:15.02:0,15,146 0/0:143,0:143:18.03:0,18,184 0/0:134,0:134:12.02:0,12,131 0/0:195,0:195:9.02:0,9,105 0/0:206,1:207:30.07:0,30,329 0/1:203,21:225:1.76:27,3,0 0/0:183,30:213:3.01:0,3,39 0/0:192,0:193:6:0,6,53 0/1:71,10:94:20.67:21,0,27 0/1:70,20:96:41.35:41,0,41 0/0:141,0:141:24.06:0,24,275 0/0:136,0:136:15.03:0,15,162 0/0:121,0:121:12.02:0,12,122 0/0:136,0:136:15.03:0,15,155 0/0:240,0:242:30.05:0,30,315 0/0:149,0:149:18.01:0,18,180 ./. 0/0:104,1:105:6.02:0,6,67 0/0:249,0:250:21.03:0,21,222 0/1:128,99:228:62.75:63,0,135 0/0:213,0:213:24.04:0,24,254 0/0:130,0:130:6.02:0,6,73 0/0:209,0:209:15.03:0,15,166 0/0:239,0:239:15.04:0,15,178 0/0:225,0:225:9.02:0,9,98 0/0:215,0:215:15.04:0,15,166 0/0:112,0:113:9.02:0,9,100 0/0:162,0:162:9.02:0,9,104 0/0:118,0:118:9.02:0,9,99 0/1:82,101:184:83.43:83,0,144 0/1:153,13:167:8.63:9,0,163 0/0:239,0:239:18.02:0,18,174 1/1:26,119:145:27.06:300,27,0 0/0:162,0:163:33.07:0,33,354 0/0:110,2:112:15.01:0,15,140 0/0:128,0:130:12.02:0,12,125 0/0:250,0:250:18.04:0,18,193 0/0:185,0:185:24.04:0,24,246 0/0:182,0:182:33.08:0,33,370 0/0:122,0:123:9.03:0,9,105 0/0:113,0:114:9.02:0,9,103 0/0:135,0:135:24.06:0,24,269 17 19015826 . G A 281.19 . AC=6;AF=0.075;AN=80;BaseQRankSum=-7.307;DP=6428;DS;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.2648;InbreedingCoeff=0.2389;MQ=5.43;MQ0=6083;MQRankSum=-3.461;QD=0.34;ReadPosRankSum=1.841 GT:AD:DP:GQ:PL 0/0:145,0:145:15.03:0,15,154 0/0:131,0:131:9:0,9,80 0/0:121,0:121:9.01:0,9,93 0/0:166,0:167:9.02:0,9,105 0/0:189,1:190:18.04:0,18,200 0/1:132,69:201:1.76:27,3,0 0/0:119,72:191:3.01:0,3,39 0/0:179,0:179:8.99:0,9,77 ./. 0/0:65,19:84:6:0,6,53 0/0:123,0:123:21.05:0,21,241 0/0:112,0:112:18.03:0,18,197 0/0:109,0:109:9.02:0,9,100 0/0:121,0:121:9.02:0,9,99 0/0:234,0:234:27.05:0,27,290 0/0:144,0:144:18.01:0,18,180 ./. 0/0:89,9:98:3.01:0,3,33 0/0:245,0:247:24.03:0,24,258 0/1:115,78:193:14.66:15,0,87 0/0:202,0:202:30.05:0,30,311 0/0:115,0:115:6.02:0,6,71 0/0:190,0:190:9.03:0,9,106 0/0:239,0:239:27.05:0,27,292 0/0:230,0:230:12.03:0,12,138 0/0:211,0:211:12.03:0,12,140 0/0:102,1:103:3.01:0,3,32 0/0:146,0:147:6.02:0,6,68 0/0:98,4:102:3.01:0,3,39 0/1:71,88:159:86.43:86,0,119 0/1:135,12:147:11.64:12,0,130 0/0:233,0:234:18.02:0,18,179 1/1:26,100:126:24.04:248,24,0 0/0:153,0:153:27.06:0,27,298 0/0:106,1:107:15.01:0,15,140 0/0:126,0:126:9.01:0,9,87 0/0:233,1:236:12.03:0,12,127 0/0:181,0:182:18.04:0,18,191 0/0:165,0:165:33.08:0,33,371 0/0:112,0:112:9.03:0,9,105 0/0:109,0:109:9.02:0,9,105 0/0:133,0:133:18.05:0,18,216 17 19015872 . G T 1074.35 . AC=42;AF=0.724;AN=58;BaseQRankSum=-3.382;DP=1404;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0924;InbreedingCoeff=0.2456;MQ=5.81;MQ0=1303;MQRankSum=-0.356;QD=1.24;ReadPosRankSum=-0.068 GT:AD:DP:GQ:PL 1/1:23,10:33:3.01:33,3,0 1/1:30,9:39:3.01:33,3,0 0/0:22,10:32:3:0,3,27 1/1:14,5:19:2.99:24,3,0 1/1:15,11:26:6.02:67,6,0 ./. ./. 1/1:29,9:38:2.99:24,3,0 ./. ./. 1/1:7,11:18:9.02:100,9,0 1/1:3,13:16:3.01:33,3,0 ./. ./. 1/1:33,21:54:18:171,18,0 0/1:12,18:30:15.69:18,0,16 ./. ./. 0/0:69,2:72:9.01:0,9,97 0/1:52,14:66:27.42:27,0,27 0/0:39,7:46:6:0,6,51 ./. 1/1:35,28:63:14.98:128,15,0 0/0:66,5:71:3:0,3,27 0/1:70,8:78:57.73:67,0,58 1/1:55,9:64:3.01:33,3,0 1/1:14,3:17:3.01:33,3,0 ./. 1/1:13,6:19:3.01:33,3,0 1/1:6,15:22:3.01:33,3,0 0/1:10,7:17:1.76:24,3,0 ./. 1/1:0,12:12:3.01:33,3,0 1/1:12,9:21:3.01:33,3,0 0/0:21,1:22:9.01:0,9,87 ./. 1/1:77,9:86:9.01:91,9,0 1/1:47,7:54:3.01:33,3,0 1/1:17,18:35:6:57,6,0 0/0:27,2:30:3:0,3,27 ./. 1/1:29,8:37:6.02:67,6,0 17 19015897 . A G 809.40 . AC=32;AF=1.000;AN=32;DP=50;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;InbreedingCoeff=-0.1354;MQ=19.66;MQ0=19;QD=17.60 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:0,1:1:2.99:24,3,0 1/1:0,3:3:9.02:100,9,0 ./. ./. 1/1:0,1:1:2.99:24,3,0 ./. ./. 1/1:1,1:3:3.01:33,3,0 ./. ./. ./. 1/1:0,3:3:8.98:71,9,0 1/1:0,1:1:3.01:33,3,0 ./. ./. 1/1:1,1:6:3.01:33,3,0 1/1:0,3:3:3.01:33,3,0 ./. ./. 1/1:0,4:4:11.97:95,12,0 1/1:0,2:2:3.01:33,3,0 1/1:0,4:4:12.02:124,12,0 ./. ./. ./. ./. ./. ./. ./. 1/1:0,2:2:6.02:67,6,0 ./. 1/1:0,1:1:3.01:33,3,0 ./. 1/1:2,5:9:6:57,6,0 ./. 1/1:0,1:1:2.99:24,3,0 ./. ./. 1/1:0,2:2:6.02:67,6,0 17 19015946 . C T 186.98 . AC=14;AF=1.000;AN=14;DP=405;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3457;MQ=5.06;MQ0=382;QD=1.75 GT:AD:DP:GQ:PL ./. ./. ./. ./. 1/1:0,16:16:3.01:33,3,0 ./. ./. ./. ./. ./. ./. ./. ./. ./. 1/1:0,19:19:3:29,3,0 1/1:0,11:11:3.01:33,3,0 ./. 1/1:0,16:16:3.01:30,3,0 1/1:0,15:15:3.01:33,3,0 ./. ./. ./. ./. ./. ./. ./. ./. 1/1:0,12:13:3.01:33,3,0 ./. ./. ./. ./.:.:12:.:0,0,0 ./. ./. ./. ./. ./. ./. ./. ./. ./. 1/1:0,5:5:3.01:33,3,0 17 19287911 . C G 512.74 . AC=18;AF=0.214;AN=84;BaseQRankSum=-13.138;DP=1667;Dels=0.00;FS=253.901;HRun=1;HaplotypeScore=1.0461;InbreedingCoeff=-0.2965;MQ=57.92;MQ0=0;MQRankSum=0.322;QD=0.75;ReadPosRankSum=-8.330 GT:AD:DP:GQ:PL 0/1:17,13:30:14.07:14,0,405 0/1:14,11:25:50.12:50,0,397 0/1:24,16:40:4.82:5,0,605 0/1:33,31:64:51.91:52,0,732 0/1:27,27:54:49.26:49,0,660 0/0:33,25:58:8.89:0,9,683 0/0:28,14:42:21.67:0,22,646 0/0:28,20:48:0.82:0,1,525 0/0:21,10:31:21.45:0,21,500 0/0:22,10:32:48.15:0,48,598 0/0:25,10:35:51.15:0,51,604 0/1:19,11:30:12.22:12,0,403 0/0:11,8:20:27.09:0,27,340 0/0:12,11:23:8.40:0,8,304 0/0:62,29:93:9.08:0,9,1755 0/0:14,11:25:30.09:0,30,364 0/1:11,15:26:69.98:70,0,198 0/0:17,13:30:12.49:0,12,449 0/0:24,9:33:11.04:0,11,752 0/0:54,36:90:67.04:0,67,1191 0/1:24,16:41:56.10:56,0,599 0/0:29,25:54:8.27:0,8,738 0/1:42,38:80:99:106,0,1151 0/1:15,19:34:22.06:22,0,386 0/0:27,23:51:20.64:0,21,646 0/1:17,12:29:47.45:47,0,373 0/0:20,10:30:38.39:0,38,450 0/1:21,10:31:19.26:19,0,489 0/1:17,12:29:52.76:53,0,271 0/1:11,17:28:26.25:26,0,246 0/0:19,11:30:14.54:0,15,496 0/0:38,14:53:35.92:0,36,871 0/1:25,25:50:4.66:5,0,544 0/0:13,9:22:24.08:0,24,298 0/0:30,18:48:18.99:0,19,835 0/0:16,15:31:33.10:0,33,403 0/0:26,16:44:14.24:0,14,771 0/0:16,14:30:1.22:0,1,313 0/1:12,19:31:34.02:34,0,229 0/1:18,13:31:12.07:12,0,429 0/0:24,9:33:4.06:0,4,694 0/1:18,10:28:36.65:37,0,495 17 19459175 . T C 1289.78 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.163;DP=1915;Dels=0.00;FS=0.531;HRun=0;HaplotypeScore=1.2209;InbreedingCoeff=-0.0120;MQ=59.14;MQ0=0;MQRankSum=-0.286;QD=17.43;ReadPosRankSum=1.229 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,144,1756 0/0:38,0:38:99:0,111,1324 0/0:37,0:37:99:0,105,1256 0/0:76,0:76:99:0,211,2525 0/0:68,0:68:99:0,193,2369 0/0:42,0:42:99:0,123,1513 0/0:45,0:45:99:0,117,1481 0/0:43,0:43:99:0,114,1414 0/0:38,0:38:99:0,102,1248 0/0:41,0:41:99:0,117,1399 0/0:30,0:30:87.27:0,87,1054 0/0:28,0:28:81.24:0,81,953 0/0:29,0:29:78.22:0,78,950 0/0:44,0:44:99:0,123,1467 0/0:122,0:122:99:0,313,3823 0/0:38,0:38:99:0,105,1260 0/0:29,0:29:78.24:0,78,955 0/0:37,0:37:99:0,108,1284 0/0:58,0:59:99:0,156,1888 0/0:70,0:70:99:0,181,2224 0/0:73,0:73:99:0,202,2437 0/0:51,0:51:99:0,141,1670 0/0:60,0:60:99:0,156,1959 0/0:35,0:35:93.28:0,93,1146 0/0:36,0:36:93.29:0,93,1191 0/0:44,0:44:99:0,117,1456 0/0:28,0:28:81.24:0,81,980 0/0:22,0:22:57.18:0,57,714 0/0:46,0:46:99:0,132,1582 0/0:41,0:41:99:0,117,1380 0/0:36,0:36:96.29:0,96,1179 0/1:22,51:74:99:1336,0,590 0/0:53,0:53:99:0,141,1720 0/0:33,0:33:90.28:0,90,1095 0/0:37,0:37:99:0,99,1215 0/0:45,0:45:99:0,129,1560 0/0:60,0:60:99:0,165,1989 0/0:33,0:33:87.27:0,87,1063 0/0:38,0:38:99:0,108,1295 0/0:28,0:28:81.25:0,81,972 0/0:33,0:33:93.27:0,93,1100 0/0:40,0:40:99:0,114,1374 17 19460972 . G A 5730.84 . 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G T 13963.76 . 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G C 5873.93 . 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C T 752.96 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.888;DP=2125;Dels=0.00;FS=13.499;HRun=0;HaplotypeScore=1.5285;InbreedingCoeff=-0.0244;MQ=59.13;MQ0=0;MQRankSum=0.118;QD=14.76;ReadPosRankSum=-0.480 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,99,1192 0/0:37,0:37:99:0,108,1339 0/0:33,0:33:96.28:0,96,1183 0/0:107,0:108:99:0,292,3737 0/0:86,0:86:99:0,238,3068 0/0:69,0:69:99:0,199,2495 0/0:52,0:52:99:0,147,1937 0/0:70,0:70:99:0,202,2613 0/0:34,0:34:96.23:0,96,1134 0/0:48,0:48:99:0,132,1588 0/0:26,0:26:69.21:0,69,871 0/0:35,0:35:90.25:0,90,1113 0/0:27,0:27:78.23:0,78,955 0/0:27,0:27:81.25:0,81,991 0/0:101,0:103:99:0,289,3523 0/0:54,0:55:99:0,144,1792 0/0:40,0:40:99:0,114,1357 0/0:36,0:36:99:0,102,1252 0/0:63,0:64:99:0,184,2203 0/0:59,0:61:99:0,165,2016 0/0:70,0:70:99:0,193,2333 0/0:51,0:51:99:0,141,1705 0/0:110,0:110:99:0,310,3981 0/0:54,0:54:99:0,163,2131 0/0:91,0:91:99:0,256,3234 0/0:75,0:75:99:0,208,2708 0/1:12,14:26:99:418,0,342 0/0:34,0:34:96.28:0,96,1182 0/1:12,13:25:99:397,0,346 0/0:39,0:40:99:0,105,1292 0/0:29,0:29:78.23:0,78,973 0/0:64,0:64:99:0,171,2125 0/0:43,0:43:99:0,117,1459 0/0:40,0:40:99:0,105,1303 0/0:31,0:31:81.23:0,81,1007 0/0:39,0:39:99:0,111,1369 0/0:62,0:62:99:0,168,2064 0/0:37,0:37:99:0,102,1226 0/0:51,0:52:99:0,138,1690 0/0:29,0:30:81.24:0,81,979 0/0:49,0:49:99:0,138,1697 0/0:27,0:27:75.23:0,75,919 17 19651632 . G A 22.71 . 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G A 3464.72 . 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C T 256946.15 . 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T C 106630.24 . AC=81;AF=0.964;AN=84;BaseQRankSum=-1.993;DP=3645;DS;Dels=0.00;FS=7.819;HRun=0;HaplotypeScore=1.0696;InbreedingCoeff=-0.0370;MQ=59.59;MQ0=0;MQRankSum=-0.959;QD=29.25;ReadPosRankSum=-0.163 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1945,159,0 1/1:0,74:74:99:2266,187,0 1/1:0,61:62:99:1923,165,0 1/1:0,153:153:99:4780,376,0 1/1:0,122:122:99:3943,307,0 1/1:0,128:128:99:4027,310,0 1/1:0,115:115:99:3533,277,0 1/1:0,145:145:99:4647,364,0 1/1:0,82:83:99:2544,217,0 1/1:0,65:66:99:2009,168,0 1/1:0,63:63:99:1844,150,0 1/1:0,65:65:99:1942,159,0 1/1:0,71:71:99:2164,178,0 1/1:1,52:53:99:1579,102,0 1/1:0,238:240:99:6871,578,0 1/1:0,51:51:99:1463,117,0 0/1:35,29:64:99:742,0,930 1/1:0,68:69:99:2140,186,0 1/1:0,83:83:99:2305,199,0 1/1:1,103:104:99:2938,215,0 1/1:0,98:98:99:2679,229,0 1/1:0,58:58:99:1704,144,0 1/1:0,145:145:99:4622,358,0 1/1:0,122:122:99:3683,283,0 1/1:0,151:151:99:4557,349,0 1/1:1,118:120:99:3676,262,0 1/1:0,56:56:99:1733,147,0 1/1:0,67:67:99:2098,178,0 1/1:0,52:52:99:1661,141,0 0/1:28,38:67:99:903,0,779 1/1:0,45:45:99:1396,117,0 1/1:0,112:112:99:3126,253,0 0/1:25,35:60:99:863,0,569 1/1:0,63:64:99:1875,159,0 1/1:0,58:58:99:1819,150,0 1/1:0,93:93:99:2715,226,0 1/1:0,86:87:99:2533,220,0 1/1:0,62:62:99:1813,147,0 1/1:0,50:50:99:1688,147,0 1/1:0,81:81:99:2329,193,0 1/1:0,65:65:99:1940,165,0 1/1:0,50:50:99:1610,135,0 17 20013802 . G A 3223.52 . AC=6;AF=0.071;AN=84;BaseQRankSum=-5.415;DP=1576;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.3538;InbreedingCoeff=-0.0769;MQ=58.47;MQ0=0;MQRankSum=0.515;QD=11.43;ReadPosRankSum=0.110 GT:AD:DP:GQ:PL 0/0:35,0:35:96.29:0,96,1175 0/0:27,0:27:75.23:0,75,909 0/0:19,0:19:54.17:0,54,676 0/0:65,0:67:99:0,171,2140 0/1:41,21:62:99:597,0,1058 0/0:56,0:56:99:0,153,1950 0/1:21,24:45:99:735,0,611 0/0:63,0:64:99:0,175,2228 0/0:23,0:23:60.18:0,60,728 0/0:18,0:18:54.15:0,54,639 0/0:22,0:22:60.18:0,60,734 0/0:30,0:30:78.20:0,78,938 0/1:14,15:29:99:334,0,357 0/0:23,0:23:54.17:0,54,674 0/1:58,40:98:99:1046,0,1714 0/1:11,13:24:99:395,0,262 0/1:14,10:24:99:222,0,425 0/0:25,0:25:72.22:0,72,894 0/0:54,0:55:99:0,153,1835 0/0:56,0:56:99:0,147,1788 0/0:60,0:61:99:0,168,2069 0/0:40,0:40:99:0,114,1387 0/0:79,0:79:99:0,205,2614 0/0:47,0:47:99:0,111,1392 0/0:55,0:55:99:0,150,1915 0/0:44,0:44:99:0,108,1385 0/0:23,0:23:60.17:0,60,726 0/0:20,0:20:54.16:0,54,647 0/0:27,0:27:78.23:0,78,951 0/0:21,0:21:57.17:0,57,690 0/0:18,0:18:54.13:0,54,628 0/0:48,0:48:99:0,129,1560 0/0:35,0:35:99:0,99,1233 0/0:35,0:35:99:0,99,1174 0/0:25,0:25:72.21:0,72,869 0/0:20,0:20:54.17:0,54,670 0/0:32,0:36:81.19:0,81,970 0/0:29,0:29:78.22:0,78,935 0/0:25,0:26:69.20:0,69,823 0/0:26,0:26:69.21:0,69,839 0/0:31,1:32:56.30:0,56,1062 0/0:27,0:27:78.24:0,78,960 17 20013818 . A C 30.51 . AC=3;AF=0.036;AN=84;BaseQRankSum=-8.897;DP=1529;Dels=0.00;FS=74.247;HRun=2;HaplotypeScore=1.0036;InbreedingCoeff=-0.0819;MQ=57.73;MQ0=0;MQRankSum=0.012;QD=0.52;ReadPosRankSum=-2.823 GT:AD:DP:GQ:PL 0/0:17,16:33:14.69:0,15,476 0/0:16,13:29:10.55:0,11,410 0/0:13,11:24:9.41:0,9,344 0/0:30,45:76:59.83:0,60,1013 0/0:28,38:66:78.20:0,78,891 0/0:27,29:56:75.21:0,75,886 0/0:17,26:43:23.44:0,23,471 0/0:24,21:45:58.98:0,59,662 0/0:15,17:33:33.97:0,34,380 0/0:8,13:21:0.70:8,0,183 0/1:8,8:16:27.33:27,0,168 0/0:15,10:25:0.94:6,0,451 0/0:15,14:30:39.10:0,39,437 0/1:8,9:17:11.18:11,0,224 0/0:50,33:84:99:0,117,1673 0/0:12,18:30:32.68:0,33,349 0/1:10,16:26:59.65:60,0,239 0/0:10,9:19:30.08:0,30,343 0/0:16,18:34:13.43:0,13,393 0/0:34,32:66:84.18:0,84,944 0/0:29,14:43:43.66:0,44,800 0/0:22,13:35:63.14:0,63,691 0/0:40,46:86:99:0,117,1334 0/0:15,22:39:26.40:0,26,495 0/0:24,22:46:57.14:0,57,656 0/0:22,26:48:63.18:0,63,749 0/0:12,12:24:27.06:0,27,293 0/0:7,14:21:12.03:0,12,131 0/0:11,9:20:4.54:0,5,337 0/0:11,12:23:30.09:0,30,355 0/0:13,14:27:3.44:0,3,300 0/0:33,28:62:40.28:0,40,710 0/0:14,21:35:39.10:0,39,450 0/0:14,12:26:42.09:0,42,471 0/0:13,15:28:8.68:0,9,422 0/0:10,11:21:24.06:0,24,272 0/0:14,18:32:39.10:0,39,438 0/0:22,15:37:40.43:0,40,643 0/0:6,18:26:1.28:5,0,148 0/0:17,13:31:41.08:0,41,408 0/0:12,9:21:30.06:0,30,329 0/0:11,14:25:30.07:0,30,332 17 20135672 . G A 844 . AC=3;AF=0.036;AN=84;BaseQRankSum=-5.673;DP=1001;Dels=0.00;FS=0.926;HRun=1;HaplotypeScore=0.8841;InbreedingCoeff=-0.0371;MQ=59.09;MQ0=0;MQRankSum=0.857;QD=15.07;ReadPosRankSum=-0.109 GT:AD:DP:GQ:PL 0/0:12,0:12:36.11:0,36,449 0/0:9,0:9:27.09:0,27,336 0/0:12,0:12:33.11:0,33,423 0/0:54,0:54:99:0,150,1966 0/0:42,0:42:99:0,117,1543 0/0:39,0:39:99:0,102,1365 0/0:25,0:25:75.23:0,75,980 0/0:30,0:30:87.27:0,87,1132 0/0:17,0:17:51.15:0,51,633 0/0:17,0:17:51.16:0,51,627 0/0:16,0:17:42.12:0,42,528 0/0:14,0:14:39.12:0,39,481 0/0:9,0:9:27.08:0,27,336 0/0:13,0:13:36.11:0,36,451 0/0:55,0:55:99:0,147,1831 0/0:24,0:24:72.22:0,72,881 0/0:17,0:17:48.14:0,48,592 0/0:13,0:13:39.09:0,39,466 0/0:34,0:34:90.27:0,90,1125 0/0:49,0:49:99:0,138,1735 0/0:33,0:33:90.22:0,90,1089 0/0:30,0:30:84.26:0,84,1061 0/0:63,0:63:99:0,169,2238 0/0:23,0:23:66.19:0,66,850 0/0:28,0:28:84.25:0,84,1097 0/1:10,12:22:99:334,0,325 0/0:13,0:13:36.11:0,36,448 0/0:16,0:16:42.13:0,42,540 0/0:22,0:22:66.20:0,66,796 0/0:16,1:17:48.15:0,48,601 0/0:17,0:17:51.16:0,51,637 0/0:31,0:32:84.25:0,84,1034 0/0:27,0:27:81.23:0,81,1014 0/0:17,0:17:48.15:0,48,600 0/0:19,0:19:57.14:0,57,680 0/1:6,11:17:99:277,0,144 0/0:31,0:31:90.28:0,90,1128 0/0:16,0:16:45.14:0,45,562 0/1:7,10:17:99:308,0,190 0/0:16,0:16:45.14:0,45,574 0/0:10,0:10:27.09:0,27,340 0/0:13,0:13:39.12:0,39,477 17 20135710 . C T 306.67 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.087;DP=494;Dels=0.00;FS=2.107;HRun=0;HaplotypeScore=0.4695;InbreedingCoeff=-0.0217;MQ=57.63;MQ0=0;MQRankSum=-0.657;QD=10.95;ReadPosRankSum=2.325 GT:AD:DP:GQ:PL 0/0:9,0:9:27.06:0,27,284 0/0:6,0:6:12.03:0,12,129 0/0:3,0:3:9.02:0,9,95 0/0:26,0:26:72.19:0,72,804 0/0:24,0:24:63.16:0,63,705 0/0:19,0:19:57.13:0,57,647 0/0:10,0:10:18.03:0,18,196 0/0:12,0:12:33.10:0,33,388 0/0:10,0:10:27.07:0,27,297 0/0:9,0:9:21.05:0,21,222 0/0:10,0:10:30.07:0,30,333 0/0:10,0:10:30.08:0,30,335 0/0:1,0:1:3:0,3,29 0/0:11,0:11:30.07:0,30,321 0/0:18,0:18:48.11:0,48,504 0/0:11,0:11:33.07:0,33,343 0/0:5,0:5:15.04:0,15,169 0/0:6,0:6:9.02:0,9,94 0/0:13,0:13:33.08:0,33,358 0/0:20,0:20:51.13:0,51,556 0/0:19,0:19:45.12:0,45,493 0/0:8,0:8:18.03:0,18,183 0/1:16,12:28:99:353,0,437 0/0:13,0:13:36.07:0,36,392 0/0:9,0:9:24.07:0,24,286 0/0:13,0:13:36.09:0,36,406 0/0:9,0:9:21.05:0,21,222 0/0:6,0:6:18.03:0,18,180 0/0:12,0:12:36.08:0,36,385 0/0:5,0:5:12.03:0,12,133 0/0:9,0:9:27.07:0,27,300 0/0:19,0:19:51.13:0,51,565 0/0:18,0:18:51.11:0,51,534 0/0:9,0:9:27.07:0,27,303 0/0:9,0:9:27.07:0,27,296 0/0:11,0:11:30.07:0,30,326 0/0:15,0:15:27.04:0,27,287 0/0:10,0:10:24.06:0,24,260 0/0:18,0:18:48.10:0,48,502 0/0:8,0:8:24.06:0,24,265 0/0:4,0:4:12.03:0,12,124 0/0:9,0:9:24.05:0,24,250 17 20150533 . T G 335.58 . AC=11;AF=0.131;AN=84;BaseQRankSum=-19.975;DP=1215;Dels=0.00;FS=150.753;HRun=2;HaplotypeScore=0.4781;InbreedingCoeff=-0.1861;MQ=58.42;MQ0=1;MQRankSum=-0.241;QD=0.98;ReadPosRankSum=-5.039 GT:AD:DP:GQ:PL 0/0:10,12:22:27.07:0,27,311 0/0:19,14:34:28.43:0,28,551 0/1:9,11:20:50.88:51,0,266 0/1:18,23:41:27.63:28,0,500 0/0:27,22:49:48.52:0,49,814 0/0:14,12:26:42.06:0,42,455 0/0:27,15:43:70.97:0,71,794 0/0:17,5:22:4.76:0,5,386 0/0:16,16:32:23.47:0,23,521 0/1:12,4:16:19.17:19,0,299 0/0:15,7:22:23.42:0,23,436 0/0:15,9:24:39.07:0,39,446 0/0:12,6:18:33.06:0,33,345 0/1:18,15:33:50.25:50,0,482 0/1:38,26:64:99:119,0,1012 0/0:12,9:21:36.09:0,36,408 0/0:14,6:20:36.09:0,36,409 0/0:11,7:19:33.07:0,33,349 0/1:13,18:31:11.90:12,0,340 0/0:30,24:55:81.19:0,81,911 0/0:22,12:34:53.63:0,54,606 0/0:29,12:41:59.50:0,60,880 0/0:22,21:43:32.48:0,32,653 0/0:13,12:25:7.55:0,8,380 0/0:14,15:29:13.39:0,13,374 0/0:15,15:31:5.14:0,5,418 0/0:13,12:25:4.74:0,5,368 0/0:17,10:27:22.41:0,22,452 0/0:9,7:16:3.93:0,4,226 0/0:11,8:20:27.07:0,27,308 0/1:14,16:30:21.89:22,0,403 0/0:19,17:36:26.45:0,26,546 0/0:11,14:25:5.37:0,5,276 0/0:12,10:22:8.36:0,8,260 0/0:11,12:23:4.06:0,4,262 0/0:12,9:21:11.19:0,11,269 0/1:17,12:29:59.55:60,0,447 0/0:14,17:31:30.06:0,30,325 0/1:12,17:29:40.19:40,0,259 0/1:15,10:25:34.66:35,0,353 0/1:12,13:25:35.89:36,0,289 0/0:11,5:16:3.39:0,3,276 17 20361517 . C T 381.48 . AC=2;AF=0.029;AN=68;BaseQRankSum=-3.877;DP=3438;DS;Dels=0.00;FS=10.534;HRun=0;HaplotypeScore=0.8318;InbreedingCoeff=0.1982;MQ=12.41;MQ0=1960;MQRankSum=3.492;QD=3.00;ReadPosRankSum=-0.900 GT:AD:DP:GQ:PL ./. 0/0:63,0:63:6:0,6,53 0/0:79,0:79:24:0,24,211 0/0:169,0:170:99:0,153,1478 0/0:123,0:123:99:0,105,996 0/0:112,0:112:57.04:0,57,538 0/0:121,0:121:81.08:0,81,779 0/0:60,0:60:42.07:0,42,442 0/0:71,0:71:6:0,6,53 0/0:80,0:80:20.99:0,21,182 ./. 0/1:51,25:76:1.66:213,3,0 0/1:34,16:51:17.34:231,0,17 0/0:65,0:65:15:0,15,133 0/0:249,0:250:72.09:0,72,711 0/0:62,0:62:18:0,18,157 0/0:69,0:69:3.01:0,3,30 ./. 0/0:120,0:120:18.01:0,18,161 0/0:135,0:135:48.07:0,48,484 0/0:126,0:127:36.08:0,36,400 0/0:59,0:59:12.01:0,12,108 0/0:121,0:121:45.07:0,45,462 0/0:39,0:39:15.01:0,15,135 0/0:62,0:62:30.03:0,30,287 0/0:80,0:80:39.09:0,39,444 0/0:50,0:50:3:0,3,27 0/0:63,0:63:9:0,9,80 ./. 0/0:65,0:65:3:0,3,27 0/0:48,0:48:9:0,9,80 0/0:73,0:74:21.03:0,21,211 0/0:99,0:99:27.03:0,27,256 ./. ./. 0/0:83,0:83:9:0,9,80 0/0:90,0:92:54.05:0,54,513 0/0:54,0:54:3:0,3,27 0/0:42,0:43:9:0,9,80 ./. 0/0:72,1:73:3:0,3,27 ./. 17 20370767 . G C 1539.03 . AC=48;AF=0.923;AN=52;BaseQRankSum=-0.831;DP=592;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2314;InbreedingCoeff=0.0058;MQ=8.80;MQ0=513;MQRankSum=1.773;QD=3.65;ReadPosRankSum=2.346 GT:AD:DP:GQ:PL ./. ./. ./. ./. 1/1:12,11:23:9.02:102,9,0 1/1:10,2:12:3.01:39,3,0 ./. 1/1:9,14:23:3.01:33,3,0 ./. 1/1:7,9:16:9.01:89,9,0 1/1:5,2:7:3:28,3,0 1/1:9,9:18:3:28,3,0 ./. 1/1:7,7:14:3:28,3,0 1/1:20,14:34:21.02:207,21,0 0/0:11,4:15:5.99:0,6,50 1/1:9,2:11:3:25,3,0 1/1:8,8:16:6.02:72,6,0 1/1:10,6:16:6:53,6,0 ./. 1/1:19,9:28:3.01:39,3,0 1/1:11,7:18:9.02:93,9,0 ./. ./. 0/1:8,18:26:8.67:113,0,9 0/1:17,5:22:49.08:49,0,49 ./. ./. ./. ./. 1/1:2,2:4:3:28,3,0 1/1:11,24:35:15.02:147,15,0 1/1:6,8:14:6.01:61,6,0 ./. 1/1:8,7:15:6.01:60,6,0 ./. 1/1:12,8:20:6.02:73,6,0 1/1:6,5:12:3:28,3,0 1/1:6,4:10:6.01:63,6,0 1/1:7,3:10:3:28,3,0 1/1:1,4:5:3:28,3,0 1/1:6,7:13:9.02:104,9,0 17 21147520 . C T 299.04 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.254;DP=1395;Dels=0.00;FS=10.987;HRun=0;HaplotypeScore=1.0626;InbreedingCoeff=-0.0121;MQ=59.15;MQ0=0;MQRankSum=1.471;QD=11.96;ReadPosRankSum=0.506 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,99,1108 0/0:28,0:28:78.16:0,78,855 0/0:20,0:20:51.15:0,51,624 0/0:55,0:55:99:0,138,1784 0/0:47,0:47:99:0,129,1630 0/0:44,0:44:99:0,114,1453 0/0:30,0:30:78.23:0,78,970 0/0:33,0:33:81.25:0,81,1054 0/0:24,0:24:69.18:0,69,780 0/0:28,0:28:69.19:0,69,814 0/0:32,0:32:87.22:0,87,974 0/0:19,0:19:57.14:0,57,640 0/0:17,0:17:45.12:0,45,526 0/0:23,0:23:69.18:0,69,784 0/0:115,0:115:99:0,304,3501 0/0:38,0:38:99:0,111,1250 0/1:13,12:25:99:345,0,356 0/0:18,0:18:45.13:0,45,542 0/0:31,0:32:84.18:0,84,941 0/0:47,0:47:99:0,132,1470 0/0:33,0:33:93.25:0,93,1066 0/0:21,0:21:57.11:0,57,608 0/0:57,0:57:99:0,150,1913 0/0:26,0:26:75.20:0,75,925 0/0:31,0:31:87.27:0,87,1090 0/0:31,0:31:75.23:0,75,958 0/0:27,0:27:75.19:0,75,852 0/0:35,0:35:99:0,99,1104 0/0:28,0:28:78.21:0,78,890 0/0:33,0:33:96.26:0,96,1074 0/0:24,0:24:69.19:0,69,785 0/0:38,0:38:99:0,99,1130 0/0:24,0:24:60.17:0,60,708 0/0:29,0:29:81.18:0,81,888 0/0:30,0:30:81.23:0,81,964 0/0:31,0:31:84.20:0,84,950 0/0:45,0:45:99:0,108,1289 0/0:44,0:44:99:0,114,1307 0/0:33,0:33:96.24:0,96,1084 0/0:28,0:28:78.20:0,78,888 0/0:16,0:16:39.10:0,39,446 0/0:21,0:21:60.15:0,60,672 17 21156530 . G GC 467.74 . AC=22;AF=1.000;AN=22;DP=14;FS=0.000;HRun=2;HaplotypeScore=2.3636;InbreedingCoeff=-0.1912;MQ=57.43;MQ0=0;QD=33.41 GT:AD:DP:GQ:PL ./. ./. ./. ./.:.:1:.:0,0,0 ./. ./. ./. ./. ./. ./. ./. 1/1:0,1:1:3.01:43,3,0 1/1:0,1:1:3.01:43,3,0 ./.:.:1:.:0,0,0 1/1:0,1:1:3.01:43,3,0 1/1:0,1:1:3.01:43,3,0 ./. ./. ./. 1/1:0,1:1:3.01:43,3,0 1/1:0,1:1:3.01:43,3,0 1/1:0,1:1:3.01:43,3,0 ./. ./. ./. 1/1:0,1:1:3.01:42,3,0 1/1:0,2:2:6.02:86,6,0 ./. ./. ./. ./. ./. 1/1:0,1:1:3.01:43,3,0 ./. ./. ./. ./. ./. ./. ./. ./. 1/1:0,1:1:3.01:43,3,0 17 21201667 . T C 1673.02 . AC=3;AF=0.036;AN=84;BaseQRankSum=-2.223;DP=7246;DS;Dels=0.00;FS=13.482;HRun=0;HaplotypeScore=4.2913;InbreedingCoeff=-0.0370;MQ=59.05;MQ0=0;MQRankSum=1.074;QD=4.44;ReadPosRankSum=-2.519 GT:AD:DP:GQ:PL 0/0:144,2:148:99:0,394,4574 0/0:127,2:131:99:0,370,4272 0/0:126,0:128:99:0,334,3908 0/0:239,1:250:99:0,683,8049 0/0:245,0:250:99:0,698,8286 0/0:241,2:250:99:0,668,8074 0/0:220,0:225:99:0,608,7322 0/0:240,0:250:99:0,656,7827 0/0:119,1:121:99:0,337,3905 0/0:118,0:118:99:0,328,3797 0/0:138,3:144:99:0,354,4413 0/0:137,0:138:99:0,367,4334 0/0:126,0:128:99:0,361,4130 0/0:133,1:137:99:0,385,4503 0/0:246,1:250:99:0,704,8107 0/0:132,1:136:99:0,373,4324 0/0:120,0:121:99:0,349,4094 0/0:110,0:112:99:0,298,3456 0/0:231,1:239:99:0,641,7488 0/0:238,0:250:99:0,647,7472 0/0:245,0:250:99:0,668,7870 0/0:177,0:182:99:0,484,5488 0/0:241,0:249:99:0,695,8213 0/0:226,0:236:99:0,626,7493 0/0:245,0:250:99:0,656,7897 0/0:217,0:222:99:0,575,6956 0/0:105,0:110:99:0,295,3434 0/0:126,0:129:99:0,349,4098 0/0:119,1:122:99:0,331,3884 0/1:93,34:127:99:769,0,2613 0/1:85,31:117:99:668,0,2437 0/0:239,0:250:99:0,659,7673 0/0:185,1:188:99:0,499,5899 0/0:114,1:116:99:0,319,3637 0/0:136,0:138:99:0,391,4479 0/0:152,0:156:99:0,418,4810 0/0:237,2:246:99:0,665,7801 0/1:108,24:133:99:311,0,3229 0/0:118,1:121:99:0,337,3888 0/0:138,0:140:99:0,397,4640 0/0:114,0:116:99:0,316,3622 0/0:122,0:122:99:0,352,4130 17 21203893 . T C 10917.06 . AC=42;AF=0.500;AN=84;BaseQRankSum=6.264;DP=944;Dels=0.00;FS=1.956;HRun=1;HaplotypeScore=0.8998;InbreedingCoeff=-1.0000;MQ=58.10;MQ0=0;MQRankSum=-0.926;QD=11.56;ReadPosRankSum=-0.949 GT:AD:DP:GQ:PL 0/1:9,7:16:99:220,0,258 0/1:9,11:20:99:296,0,284 0/1:10,5:15:99:145,0,253 0/1:24,14:38:99:299,0,753 0/1:16,6:22:99:183,0,478 0/1:13,13:26:99:406,0,435 0/1:12,11:23:99:317,0,361 0/1:15,8:23:99:171,0,435 0/1:9,6:15:99:164,0,227 0/1:9,7:16:99:218,0,284 0/1:6,9:15:99:292,0,150 0/1:13,8:21:99:242,0,394 0/1:6,2:8:53.64:54,0,172 0/1:21,9:30:99:242,0,565 0/1:44,31:75:99:830,0,1138 0/1:19,11:30:99:281,0,540 0/1:6,9:15:99:271,0,172 0/1:12,8:20:99:232,0,374 0/1:16,20:36:99:582,0,374 0/1:19,10:29:99:254,0,561 0/1:27,12:40:99:299,0,643 0/1:10,10:20:99:289,0,276 0/1:16,10:26:99:317,0,471 0/1:8,4:12:99:127,0,205 0/1:21,5:26:87.58:88,0,575 0/1:10,3:13:60.32:60,0,262 0/1:10,9:19:99:264,0,275 0/1:10,7:17:99:227,0,228 0/1:7,7:14:99:217,0,199 0/1:10,18:28:99:470,0,248 0/1:8,7:15:99:151,0,225 0/1:8,19:27:99:550,0,196 0/1:14,13:27:99:370,0,377 0/1:9,9:18:99:249,0,281 0/1:14,8:22:99:214,0,404 0/1:14,9:23:99:268,0,376 0/1:12,7:19:99:146,0,325 0/1:14,8:22:99:203,0,376 0/1:9,9:18:99:239,0,261 0/1:9,9:18:99:282,0,244 0/1:8,5:13:99:118,0,226 0/1:10,3:13:70.69:71,0,332 17 21203907 . T C 2025.95 . AC=15;AF=0.179;AN=84;BaseQRankSum=-1.590;DP=942;Dels=0.00;FS=3.457;HRun=0;HaplotypeScore=0.6309;InbreedingCoeff=-0.2299;MQ=57.99;MQ0=0;MQRankSum=0.978;QD=6.05;ReadPosRankSum=-2.235 GT:AD:DP:GQ:PL 0/0:17,0:17:48.14:0,48,567 0/0:24,0:24:66.20:0,66,794 0/0:12,1:13:1.08:5,0,305 0/0:39,0:39:99:0,99,1245 0/0:24,0:24:57.18:0,57,728 0/0:25,0:25:66.20:0,66,830 0/0:26,0:26:69.22:0,69,864 0/0:21,0:21:54.13:0,54,644 0/1:14,3:17:41.56:42,0,371 0/0:18,0:18:51.15:0,51,614 0/1:9,4:13:99:99,0,257 0/0:22,0:22:60.17:0,60,709 0/0:12,1:13:33.10:0,33,402 0/0:27,1:28:72.20:0,72,860 0/0:68,0:69:99:0,159,1966 0/0:26,0:26:69.19:0,69,809 0/0:11,0:11:27.08:0,27,333 0/1:14,8:22:99:133,0,441 0/1:18,14:32:99:372,0,471 0/1:16,12:28:99:309,0,457 0/1:31,6:38:99:103,0,858 0/1:11,10:21:99:285,0,296 0/0:29,0:29:72.22:0,72,909 0/1:12,2:14:6.88:7,0,326 0/1:27,4:31:36.40:36,0,758 0/1:12,2:14:37.31:37,0,323 0/0:18,0:18:48.14:0,48,584 0/0:17,0:17:45.14:0,45,551 0/0:9,0:9:24.07:0,24,285 0/1:11,14:25:99:356,0,276 0/1:12,8:20:99:176,0,347 0/0:30,0:30:66.20:0,66,826 0/1:21,6:27:99:110,0,565 0/0:21,0:21:60.18:0,60,727 0/0:21,0:21:51.13:0,51,608 0/1:17,4:21:75.91:76,0,504 0/0:19,0:19:45.13:0,45,551 0/0:23,0:23:57.17:0,57,706 0/0:18,0:18:48.15:0,48,591 0/0:13,2:15:10.41:0,10,382 0/0:11,0:11:30.09:0,30,364 0/1:10,2:12:35:35,0,304 17 21203934 . G A 8754.17 . AC=42;AF=0.500;AN=84;BaseQRankSum=-17.490;DP=835;Dels=0.00;FS=8.632;HRun=0;HaplotypeScore=2.2171;InbreedingCoeff=-0.9997;MQ=57.32;MQ0=0;MQRankSum=2.406;QD=10.48;ReadPosRankSum=-0.623 GT:AD:DP:GQ:PL 0/1:14,4:18:85.35:85,0,410 0/1:10,13:23:99:352,0,224 0/1:10,3:13:55.68:56,0,263 0/1:21,14:36:99:360,0,651 0/1:17,10:27:99:259,0,518 0/1:14,17:31:99:510,0,396 0/1:14,7:21:99:190,0,437 0/1:12,2:14:34.37:34,0,376 0/1:7,7:14:99:186,0,226 0/1:7,8:15:99:194,0,198 0/1:6,8:14:99:235,0,183 0/1:14,10:24:99:238,0,403 0/1:9,4:13:99:107,0,245 0/1:7,7:14:99:205,0,225 0/1:34,21:55:99:538,0,907 0/1:17,8:25:99:211,0,531 0/1:8,6:14:99:164,0,227 0/1:13,4:17:91.32:91,0,376 0/1:19,5:24:99:100,0,566 0/1:12,9:21:99:249,0,363 0/1:26,9:35:99:192,0,858 0/1:11,5:16:78.09:78,0,373 0/1:14,11:25:99:279,0,361 0/1:10,3:13:72.09:72,0,331 0/1:16,5:21:99:117,0,503 0/1:9,6:15:99:147,0,294 0/1:5,10:15:99:271,0,146 0/1:10,7:17:99:190,0,252 0/1:3,1:4:22.32:22,0,99 0/1:9,8:17:99:225,0,289 0/1:11,9:20:99:213,0,356 0/1:6,18:24:99:434,0,171 0/1:15,14:29:99:380,0,422 0/1:13,12:25:99:326,0,392 0/1:5,8:13:99:234,0,142 0/1:7,9:16:99:262,0,220 0/1:11,8:19:99:224,0,295 0/1:10,3:13:67.14:67,0,275 0/1:11,8:19:99:213,0,319 0/1:8,8:16:99:205,0,228 0/1:12,2:14:33.49:33,0,345 0/1:9,7:16:99:201,0,260 17 21203941 . G A 1366.78 . AC=19;AF=0.226;AN=84;BaseQRankSum=-2.444;DP=801;Dels=0.00;FS=2.849;HRun=0;HaplotypeScore=2.4935;InbreedingCoeff=-0.2980;MQ=56.99;MQ0=0;MQRankSum=-6.706;QD=4.01;ReadPosRankSum=-1.789 GT:AD:DP:GQ:PL 0/1:14,3:17:53.52:54,0,438 0/0:21,0:21:48.15:0,48,603 0/1:8,1:10:9.37:9,0,220 0/0:32,0:32:84.21:0,84,1062 0/0:24,0:24:63.20:0,63,843 0/0:26,0:26:75.23:0,75,944 0/0:21,0:21:57.18:0,57,750 0/0:12,0:12:33.09:0,33,429 0/1:11,2:13:16.05:16,0,312 0/0:13,0:13:30.09:0,30,363 0/1:9,4:13:95.54:96,0,299 0/0:23,0:23:57.16:0,57,694 0/0:13,0:13:33.08:0,33,389 0/0:15,0:15:42.12:0,42,495 0/0:57,0:57:99:0,144,1774 0/0:25,0:25:72.20:0,72,827 0/0:16,0:16:42.09:0,42,471 0/1:12,4:16:99:100,0,290 0/1:21,4:25:55.99:56,0,565 0/1:11,7:20:99:184,0,313 0/1:28,5:33:63.97:64,0,854 0/1:9,4:13:84.87:85,0,279 0/0:22,0:22:60.17:0,60,793 0/0:12,1:13:2.67:0,3,383 0/1:18,2:20:12.70:13,0,561 0/1:12,3:15:58.96:59,0,360 0/0:14,0:14:36.11:0,36,437 0/0:17,0:17:48.14:0,48,572 0/0:3,0:3:9.03:0,9,111 0/1:10,8:18:99:215,0,303 0/1:15,9:24:99:212,0,375 0/0:22,0:22:57.16:0,57,698 0/1:21,4:25:61.70:62,0,609 0/0:21,1:22:26.74:0,27,636 0/0:14,0:14:42.10:0,42,465 0/1:13,5:18:99:105,0,369 0/1:15,4:19:43.97:44,0,410 0/1:9,2:11:29.06:29,0,243 0/0:18,0:18:48.14:0,48,581 0/1:10,4:14:85.01:85,0,291 0/0:17,0:17:48.12:0,48,555 0/1:14,3:17:49.16:49,0,424 17 21203949 . C T 8098.81 . AC=42;AF=0.500;AN=84;BaseQRankSum=6.255;DP=797;Dels=0.00;FS=4.651;HRun=0;HaplotypeScore=1.9959;InbreedingCoeff=-1.0000;MQ=57.12;MQ0=0;MQRankSum=-3.128;QD=10.16;ReadPosRankSum=-0.300 GT:AD:DP:GQ:PL 0/1:11,5:16:99:126,0,310 0/1:9,11:20:99:295,0,205 0/1:7,4:11:99:107,0,198 0/1:21,11:33:99:260,0,617 0/1:16,9:25:99:216,0,472 0/1:12,11:23:99:351,0,313 0/1:14,9:23:99:275,0,356 0/1:7,3:10:78.53:79,0,195 0/1:6,5:12:99:103,0,169 0/1:6,6:12:99:133,0,141 0/1:7,6:13:99:175,0,178 0/1:14,12:26:99:296,0,331 0/1:8,3:11:81.23:81,0,191 0/1:8,9:17:99:258,0,213 0/1:35,20:56:99:570,0,854 0/1:17,5:22:99:109,0,462 0/1:10,7:17:99:208,0,235 0/1:12,3:15:66.25:66,0,329 0/1:18,8:26:99:196,0,490 0/1:11,9:20:99:246,0,276 0/1:24,6:30:99:111,0,648 0/1:11,4:15:90.82:91,0,283 0/1:17,8:25:99:235,0,445 0/1:10,4:14:99:112,0,297 0/1:16,3:20:51.84:52,0,469 0/1:7,6:13:99:151,0,210 0/1:6,10:16:99:262,0,125 0/1:8,7:15:99:203,0,203 0/1:4,4:8:96.28:117,0,96 0/1:10,8:18:99:201,0,281 0/1:15,5:20:99:121,0,414 0/1:10,16:26:99:393,0,254 0/1:12,11:23:99:295,0,333 0/1:13,12:25:99:327,0,360 0/1:7,6:13:99:156,0,204 0/1:9,7:16:99:194,0,247 0/1:10,9:19:99:239,0,247 0/1:10,5:15:99:129,0,284 0/1:8,5:13:99:148,0,204 0/1:7,6:14:99:171,0,199 0/1:13,3:16:62.62:63,0,330 0/1:8,6:15:99:180,0,189 17 21203964 . C G 350.61 . AC=4;AF=0.048;AN=84;BaseQRankSum=2.685;DP=780;Dels=0.00;FS=8.322;HRun=1;HaplotypeScore=0.6194;InbreedingCoeff=-0.0651;MQ=57.32;MQ0=0;MQRankSum=-2.875;QD=4.74;ReadPosRankSum=-0.061 GT:AD:DP:GQ:PL 0/0:15,1:17:7.30:0,7,422 0/0:17,0:17:48.13:0,48,556 0/0:9,0:9:24.07:0,24,275 0/0:31,0:31:93.26:0,93,1081 0/0:24,0:24:66.20:0,66,812 0/0:25,0:25:66.19:0,66,793 0/0:22,0:22:57.16:0,57,685 0/0:9,0:9:24.07:0,24,288 0/0:13,0:13:33.09:0,33,387 0/0:12,0:12:33.09:0,33,379 0/0:10,0:10:30.08:0,30,329 0/0:21,0:21:54.15:0,54,635 0/0:9,0:9:24.07:0,24,282 0/0:19,0:19:54.13:0,54,625 0/0:51,0:51:99:0,141,1583 0/0:22,0:22:63.18:0,63,730 0/0:17,0:17:42.11:0,42,470 0/0:16,1:17:12.56:0,13,505 0/1:20,10:30:99:242,0,550 0/0:20,2:22:0.44:10,0,536 0/0:24,0:24:66.16:0,66,758 0/0:16,0:16:39.11:0,39,466 0/0:29,0:29:81.22:0,81,979 0/1:11,2:13:36.55:37,0,366 0/0:19,0:19:51.15:0,51,605 0/0:9,0:9:24.06:0,24,271 0/0:13,0:13:33.09:0,33,368 0/0:16,0:16:39.10:0,39,433 0/0:9,0:9:24.05:0,24,250 0/0:18,0:18:51.14:0,51,581 0/0:19,0:19:48.14:0,48,576 0/0:31,0:31:81.22:0,81,941 0/0:20,0:20:54.15:0,54,639 0/0:20,0:20:54.14:0,54,599 0/0:16,0:16:48.14:0,48,568 0/0:16,0:16:42.09:0,42,461 0/1:11,5:16:99:102,0,296 0/1:12,3:15:53.68:54,0,352 0/0:14,0:14:36.09:0,36,405 0/0:13,0:13:36.07:0,36,378 0/0:19,0:19:51.14:0,51,587 0/0:18,0:18:48.13:0,48,544 17 21207781 . G GT 543.95 . AC=12;AF=0.143;AN=84;BaseQRankSum=25.393;DP=3994;FS=585.494;HRun=1;HaplotypeScore=440.0614;InbreedingCoeff=-0.1666;MQ=57.31;MQ0=0;MQRankSum=-23.400;QD=0.58;ReadPosRankSum=-0.613 GT:AD:DP:GQ:PL 0/0:86,0:86:99:0,170,3289 0/0:74,0:74:43.35:0,43,2545 0/1:64,1:65:44.19:44,0,2058 0/0:167,2:169:99:0,129,6140 0/0:149,0:149:99:0,204,5626 0/0:107,0:104:34:0,34,3642 0/0:93,0:91:44.91:0,45,3317 0/1:111,0:111:99:127,0,3736 0/1:71,1:72:39.87:40,0,2285 0/0:62,0:62:99:0,131,2342 0/1:77,0:77:26.41:26,0,2612 0/1:80,2:82:30.99:31,0,2639 0/0:69,0:69:99:0,158,2678 0/0:83,0:83:61.11:0,61,2873 0/0:241,1:242:99:0,269,8845 0/0:86,0:86:99:0,106,3007 0/1:74,0:74:56.07:56,0,2438 0/0:63,0:63:30.88:0,31,2181 0/0:116,1:117:99:0,218,4379 0/0:143,0:143:99:0,131,5098 0/0:140,0:140:99:0,161,5078 0/1:88,0:87:79.15:79,0,2847 0/0:168,1:169:99:0,279,6366 0/0:96,0:95:84.71:0,85,3463 0/0:97,0:97:47.83:0,48,3319 0/1:93,0:91:26.57:27,0,3199 0/0:54,0:54:99:0,107,2116 0/0:70,0:70:99:0,102,2587 0/0:55,0:55:60.06:0,60,1974 0/0:64,0:64:72.75:0,73,2186 0/1:66,0:66:99:191,0,2037 0/0:161,1:162:75.80:0,76,5729 0/0:103,0:103:27.76:0,28,3551 0/1:72,0:72:32.48:32,0,2429 0/0:85,0:85:79.94:0,80,3066 0/0:72,0:72:83:0,83,2434 0/0:124,0:124:99:0,110,4509 0/0:78,0:78:18.06:0,18,2788 0/0:65,0:65:93.41:0,93,2355 0/1:79,0:79:18.75:19,0,2587 0/1:66,0:66:25.14:25,0,2220 0/0:72,0:72:48.46:0,48,2559 17 21207813 . T G 13.49 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.264;DP=2752;Dels=0.00;FS=71.216;HRun=2;HaplotypeScore=3.4133;InbreedingCoeff=-0.0435;MQ=58.09;MQ0=0;MQRankSum=-10.536;QD=0.13;ReadPosRankSum=-6.733 GT:AD:DP:GQ:PL 0/0:62,5:67:99:0,112,1963 0/0:51,4:55:34.64:0,35,1538 0/1:32,6:39:55.41:55,0,863 0/0:113,5:118:99:0,267,3531 0/0:97,4:101:99:0,211,2970 0/0:58,2:60:95.59:0,96,1851 0/0:44,2:46:99:0,123,1475 0/0:70,2:72:99:0,184,2169 0/0:54,7:61:27.47:0,27,1586 0/0:40,4:44:1.84:3,0,1116 0/0:53,2:55:93.80:0,94,1496 0/0:53,7:60:0.74:7,0,1355 0/0:49,2:51:71.52:0,72,1482 0/0:58,3:62:58.95:0,59,1646 0/0:152,6:158:99:0,274,4472 0/0:52,2:55:99:0,138,1622 0/0:54,3:57:93.16:0,93,1679 0/0:42,2:44:50.48:0,50,1260 0/0:70,5:75:99:0,126,2056 0/0:104,6:110:99:0,110,3099 0/0:78,6:84:32.27:0,32,2257 0/0:62,2:64:99:0,111,1947 0/0:106,3:109:99:0,202,3244 0/0:57,4:61:72.82:0,73,1847 0/0:65,6:71:63.10:0,63,1975 0/0:57,3:60:74.55:0,75,1570 0/0:35,2:37:31.12:0,31,941 0/0:40,2:42:34.38:0,34,1126 0/0:44,3:47:18.78:0,19,1288 0/0:40,4:44:50.36:0,50,1234 0/0:47,2:49:74.26:0,74,1431 0/0:100,8:108:99:0,112,2827 0/0:68,6:74:36.44:0,36,2006 0/0:41,2:43:75.76:0,76,1311 0/0:58,4:62:99:0,101,1792 0/1:56,6:62:16.03:16,0,1646 0/0:82,8:90:32.75:0,33,2394 0/0:58,1:59:99:0,153,1825 0/0:44,2:46:77.88:0,78,1251 0/0:45,4:49:25.25:0,25,1205 0/0:45,4:49:23.06:0,23,1275 0/0:52,0:52:99:0,144,1736 17 21207834 . C T 8377.82 . AC=20;AF=0.238;AN=84;BaseQRankSum=14.589;DP=2558;Dels=0.00;FS=13.355;HRun=0;HaplotypeScore=15.4048;InbreedingCoeff=-0.3125;MQ=57.25;MQ0=0;MQRankSum=2.963;QD=7.19;ReadPosRankSum=2.455 GT:AD:DP:GQ:PL 0/1:44,17:61:99:433,0,1189 0/0:57,0:57:99:0,168,1781 0/1:40,10:50:99:188,0,1158 0/0:103,0:103:99:0,289,3357 0/0:86,0:87:99:0,256,3048 0/0:66,0:67:99:0,190,2234 0/0:44,0:44:99:0,120,1426 0/0:56,0:56:99:0,162,1900 0/1:54,14:68:99:309,0,1538 0/0:50,0:50:99:0,138,1519 0/1:33,10:43:99:231,0,873 0/0:49,0:49:99:0,141,1531 0/0:47,0:47:99:0,135,1461 0/0:53,0:53:99:0,159,1730 0/0:139,0:139:99:0,403,4374 0/0:51,0:51:99:0,147,1568 0/0:47,0:47:99:0,135,1439 0/1:19,23:42:99:697,0,474 0/1:38,30:68:99:881,0,994 0/1:55,35:90:99:973,0,1425 0/1:68,22:90:99:505,0,1823 0/1:36,19:55:99:450,0,956 0/0:97,0:97:99:0,277,3265 0/1:42,7:49:99:110,0,1272 0/1:43,10:54:99:178,0,1294 0/1:40,8:48:99:150,0,1222 0/0:40,0:40:99:0,117,1262 0/0:44,0:44:99:0,126,1327 0/0:46,0:46:99:0,138,1472 0/1:22,28:50:99:831,0,562 0/1:30,17:47:99:491,0,802 0/0:111,0:111:99:0,289,3153 0/1:49,12:62:99:186,0,1295 0/0:45,0:45:99:0,135,1496 0/0:62,0:62:99:0,177,1910 0/1:48,12:60:99:255,0,1402 0/1:58,24:82:99:546,0,1607 0/1:36,12:48:99:295,0,967 0/0:50,0:50:99:0,141,1519 0/1:39,12:51:99:227,0,1042 0/0:47,1:48:98.35:0,98,1390 0/1:31,16:47:99:441,0,846 17 21207835 . G A 1782.54 . AC=26;AF=0.310;AN=84;BaseQRankSum=-13.177;DP=2532;Dels=0.00;FS=199.167;HRun=1;HaplotypeScore=15.2834;InbreedingCoeff=-0.4398;MQ=57.16;MQ0=0;MQRankSum=-16.504;QD=1.14;ReadPosRankSum=-3.550 GT:AD:DP:GQ:PL 0/0:56,5:61:27.41:0,27,1892 0/1:53,6:59:16.25:16,0,1716 0/1:41,9:50:99:134,0,1279 0/1:89,13:102:99:108,0,3074 0/0:80,7:87:20.73:0,21,2831 0/0:59,5:64:14.59:0,15,2102 0/1:39,4:43:17.28:17,0,1242 0/1:48,7:55:45.78:46,0,1652 0/1:59,9:68:99:99,0,1838 0/1:43,7:50:75.09:75,0,1420 0/0:42,2:44:58.97:0,59,1446 0/1:44,6:50:46.76:47,0,1367 0/0:43,2:45:62.51:0,63,1419 0/1:46,8:54:87.39:87,0,1569 0/0:128,10:138:52.03:0,52,4265 0/0:52,0:52:99:0,153,1849 0/1:41,7:48:80.64:81,0,1361 0/0:39,1:40:80.87:0,81,1315 0/1:60,8:68:45.61:46,0,2025 0/1:75,13:88:99:205,0,2400 0/1:77,11:88:99:99,0,2458 0/0:50,4:54:53.15:0,53,1675 0/0:87,8:95:46.81:0,47,3103 0/0:45,5:50:14.05:0,14,1616 0/1:48,7:55:16.44:16,0,1703 0/1:45,4:49:1:1,0,1481 0/1:35,5:40:18.99:19,0,1164 0/0:43,2:45:59.78:0,60,1394 0/1:39,7:46:96.74:97,0,1239 0/1:44,5:49:25.67:26,0,1492 0/0:43,4:47:19.45:0,19,1486 0/1:95,15:110:99:168,0,2884 0/1:53,7:60:38.14:38,0,1624 0/1:37,5:42:55.21:55,0,1218 0/1:56,6:62:6.43:6,0,1832 0/1:49,11:60:99:174,0,1615 0/1:70,11:81:99:139,0,2242 0/1:39,6:45:67.82:68,0,1296 0/0:47,2:49:71.55:0,72,1570 0/0:45,4:49:4.27:0,4,1458 0/1:37,7:44:90.94:91,0,1205 0/0:44,2:46:73.52:0,74,1566 17 21207844 . C T 20011 . AC=36;AF=0.429;AN=84;BaseQRankSum=23.979;DP=2551;Dels=0.00;FS=19.276;HRun=0;HaplotypeScore=14.3127;InbreedingCoeff=-0.7500;MQ=56.77;MQ0=0;MQRankSum=14.217;QD=9.08;ReadPosRankSum=2.521 GT:AD:DP:GQ:PL 0/1:43,15:58:99:377,0,1137 0/1:31,24:55:99:629,0,759 0/1:42,9:51:99:183,0,1069 0/1:56,41:97:99:1162,0,1535 0/1:47,31:78:99:898,0,1386 0/1:37,33:70:99:890,0,1106 0/1:27,16:44:99:329,0,770 0/1:23,29:52:99:875,0,647 0/1:59,11:70:99:205,0,1657 0/1:31,13:44:99:335,0,805 0/1:29,11:40:99:283,0,787 0/1:34,25:59:99:707,0,766 0/1:19,25:44:99:739,0,459 0/1:33,24:58:99:708,0,839 0/1:87,48:136:99:1209,0,2264 0/1:29,30:59:99:842,0,704 0/1:25,23:49:99:658,0,635 0/0:42,0:42:99:0,120,1296 0/0:72,1:73:99:0,170,2129 0/0:84,0:84:99:0,232,2570 0/1:80,14:95:99:214,0,2162 0/0:51,0:51:99:0,153,1642 0/1:56,40:96:99:1196,0,1501 0/1:36,11:47:99:238,0,972 0/1:42,13:56:99:293,0,1197 0/1:44,8:52:80.50:80,0,1343 0/1:22,17:39:99:509,0,538 0/1:23,25:48:99:734,0,569 0/1:31,18:49:99:520,0,765 0/0:50,0:50:99:0,141,1545 0/0:48,0:48:99:0,141,1520 0/1:64,41:105:99:1079,0,1602 0/1:40,15:55:99:322,0,1059 0/1:27,21:48:99:614,0,755 0/1:39,19:58:99:485,0,1117 0/1:44,19:63:99:516,0,1143 0/1:78,14:93:99:222,0,1920 0/1:36,9:45:99:185,0,957 0/1:24,23:47:99:705,0,547 0/1:36,10:46:99:233,0,915 0/1:23,26:49:99:763,0,553 0/1:41,7:48:74.46:74,0,1156 17 21216846 . G C 17587 . AC=42;AF=0.500;AN=84;BaseQRankSum=-1.453;DP=1640;Dels=0.00;FS=4.559;HRun=0;HaplotypeScore=0.6670;InbreedingCoeff=-1.0000;MQ=56.88;MQ0=0;MQRankSum=-7.186;QD=10.72;ReadPosRankSum=1.446 GT:AD:DP:GQ:PL 0/1:17,13:30:99:365,0,484 0/1:20,9:29:99:232,0,547 0/1:17,8:25:99:227,0,490 0/1:35,26:61:99:629,0,1006 0/1:39,17:57:99:443,0,1182 0/1:26,8:34:99:211,0,858 0/1:32,12:44:99:233,0,1098 0/1:29,23:52:99:651,0,768 0/1:20,13:33:99:364,0,655 0/1:17,12:29:99:305,0,564 0/1:17,10:27:99:276,0,535 0/1:16,19:35:99:521,0,513 0/1:17,19:36:99:516,0,505 0/1:16,9:25:99:259,0,540 0/1:72,62:135:99:1665,0,1840 0/1:29,18:47:99:492,0,843 0/1:12,24:36:99:592,0,341 0/1:10,11:21:99:292,0,320 0/1:31,14:45:99:336,0,863 0/1:33,26:59:99:751,0,923 0/1:26,16:42:99:385,0,692 0/1:20,12:32:99:267,0,627 0/1:42,27:69:99:638,0,1290 0/1:21,15:36:99:350,0,601 0/1:20,16:36:99:421,0,615 0/1:30,12:42:99:263,0,782 0/1:19,12:31:99:308,0,578 0/1:16,6:22:99:108,0,530 0/1:12,12:24:99:333,0,384 0/1:18,16:34:99:414,0,583 0/1:16,8:24:99:198,0,517 0/1:22,14:36:99:410,0,603 0/1:20,13:33:99:359,0,550 0/1:17,12:29:99:351,0,504 0/1:14,15:29:99:420,0,457 0/1:16,12:28:99:357,0,413 0/1:36,20:56:99:427,0,975 0/1:25,14:39:99:375,0,784 0/1:19,24:43:99:631,0,538 0/1:18,16:34:99:450,0,496 0/1:16,13:29:99:364,0,464 0/1:19,13:32:99:397,0,541 17 21217513 . G A 110494.49 . AC=42;AF=0.500;AN=84;BaseQRankSum=-15.587;DP=9399;DS;Dels=0.00;FS=12.494;HRun=0;HaplotypeScore=5.2126;InbreedingCoeff=-1.0000;MQ=56.87;MQ0=1;MQRankSum=-13.786;QD=11.76;ReadPosRankSum=3.768 GT:AD:DP:GQ:PL 0/1:118,98:216:99:2711,0,3343 0/1:127,79:206:99:2109,0,3605 0/1:115,89:204:99:2474,0,3310 0/1:146,94:240:99:2484,0,4785 0/1:145,103:249:99:2829,0,4682 0/1:141,107:248:99:3041,0,4639 0/1:150,88:238:99:2403,0,4839 0/1:134,112:246:99:3026,0,4252 0/1:140,101:241:99:2688,0,3883 0/1:124,91:215:99:2459,0,3486 0/1:130,101:231:99:2710,0,3716 0/1:111,77:188:99:2153,0,3119 0/1:102,81:184:99:2183,0,2883 0/1:126,104:231:99:2961,0,3524 0/1:150,100:250:99:2631,0,4240 0/1:101,79:181:99:2181,0,2924 0/1:125,85:210:99:2334,0,3499 0/1:121,87:208:99:2362,0,3382 0/1:132,115:247:99:3015,0,3586 0/1:128,112:240:99:3102,0,3719 0/1:136,112:248:99:2970,0,3782 0/1:128,115:243:99:3112,0,3621 0/1:148,99:247:99:2602,0,4900 0/1:148,100:248:99:2787,0,4794 0/1:142,106:248:99:2833,0,4488 0/1:120,106:226:99:2936,0,3731 0/1:90,71:161:99:1934,0,2636 0/1:142,94:237:99:2527,0,4137 0/1:129,90:219:99:2338,0,3702 0/1:127,100:228:99:2684,0,3598 0/1:111,93:204:99:2534,0,3092 0/1:141,108:249:99:2933,0,4030 0/1:132,114:246:99:3109,0,3690 0/1:107,108:215:99:3008,0,2985 0/1:115,97:212:99:2542,0,3290 0/1:135,114:249:99:3179,0,3972 0/1:147,97:245:99:2461,0,4186 0/1:114,105:219:99:2895,0,3129 0/1:116,68:185:99:1791,0,3398 0/1:124,93:217:99:2527,0,3544 0/1:85,81:166:99:2314,0,2286 0/1:120,94:214:99:2625,0,3455 17 25783673 . G C 32.03 . AC=6;AF=0.150;AN=40;BaseQRankSum=0.311;DP=43;Dels=0.00;FS=2.695;HRun=0;HaplotypeScore=0.0966;InbreedingCoeff=0.1835;MQ=53.61;MQ0=0;MQRankSum=-3.457;QD=2.67;ReadPosRankSum=-2.369 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,74 ./. 0/0:2,0:2:6.02:0,6,73 0/0:2,0:2:6.02:0,6,83 ./. ./. 0/1:0,1:1:1.76:33,3,0 ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,39 ./. ./. 0/1:6,1:7:3.63:4,0,167 ./. ./. 0/1:1,1:2:15.67:16,0,33 ./. 0/0:5,0:5:15.05:0,15,191 0/0:4,0:4:12.04:0,12,154 0/0:4,0:4:9.03:0,9,112 ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0:2,0:2:3.01:0,3,45 ./. 0/1:0,1:1:1.76:22,3,0 0/0:1,0:1:3.01:0,3,30 1/1:0,1:1:3.01:33,3,0 0/0:2,0:2:6.02:0,6,69 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3:0,3,26 0/0:2,0:2:6:0,6,58 0/0:1,0:1:3.01:0,3,32 0/0:1,0:1:3.01:0,3,37 17 25783681 . A G 928.62 . AC=27;AF=0.675;AN=40;BaseQRankSum=-1.538;DP=50;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0986;InbreedingCoeff=0.2353;MQ=51.03;MQ0=0;MQRankSum=3.924;QD=21.11;ReadPosRankSum=2.285 GT:AD:DP:GQ:PL 1/1:0,2:2:3.01:39,3,0 ./. 1/1:0,2:2:3.01:33,3,0 1/1:0,2:2:6.02:72,6,0 ./. ./. 0/0:1,0:1:3.01:0,3,33 ./. ./. ./. ./. 0/1:1,1:2:15.67:27,0,16 ./. ./. 0/1:2,3:5:9.66:79,0,10 ./. 0/0:1,0:1:3.01:0,3,30 0/1:1,1:2:15.67:31,0,16 ./. 1/1:0,7:7:18.03:183,18,0 1/1:0,5:5:12.02:132,12,0 1/1:0,6:7:18.05:211,18,0 ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,39 ./. 0/1:1,0:1:1.76:0,3,22 1/1:0,1:1:3:27,3,0 0/0:1,0:1:3.01:0,3,33 1/1:0,2:2:5.99:54,6,0 1/1:1,1:2:3.01:39,3,0 ./. 1/1:0,2:2:6.01:65,6,0 1/1:0,1:1:3.01:36,3,0 0/1:1,0:1:1.76:0,3,22 17 25783691 . G T 77.49 . AC=11;AF=0.250;AN=44;BaseQRankSum=1.392;DP=53;Dels=0.00;FS=2.944;HRun=0;HaplotypeScore=0.3980;InbreedingCoeff=0.1989;MQ=48.50;MQ0=3;MQRankSum=-4.610;QD=4.56;ReadPosRankSum=0.365 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,39 ./. 0/0:1,0:1:3.01:0,3,34 0/0:2,0:2:6.02:0,6,73 ./. ./. ./. ./. ./. ./. ./. 0/1:1,1:2:15.67:16,0,27 ./. ./. 0/1:4,1:5:9.66:10,0,98 0/0:1,1:2:3.01:0,3,39 1/1:1,1:2:3.01:33,3,0 0/1:1,1:2:1.76:22,3,0 ./. 0/0:7,0:7:15.04:0,15,175 0/0:5,0:5:15.04:0,15,170 0/0:7,0:7:18.05:0,18,212 ./. ./. ./. ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,32 ./. 0/0:1,0:1:3.01:0,3,36 0/1:1,1:2:15.67:16,0,25 1/1:1,1:2:2.98:22,3,0 ./. 1/1:0,1:1:3.01:33,3,0 0/0:3,0:3:9.02:0,9,96 0/0:1,1:2:3.01:0,3,38 0/0:1,0:1:3.01:0,3,38 0/0:2,0:2:6.02:0,6,67 0/0:1,0:1:3.01:0,3,35 0/1:0,1:1:1.76:22,3,0 17 25783696 . G C 75.68 . AC=11;AF=0.229;AN=48;BaseQRankSum=2.119;DP=63;Dels=0.00;FS=2.980;HRun=1;HaplotypeScore=0.3648;InbreedingCoeff=0.2117;MQ=48.88;MQ0=3;MQRankSum=-4.484;QD=4.45;ReadPosRankSum=1.450 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,37 ./. 0/0:2,0:2:6.01:0,6,58 0/0:3,0:3:6.02:0,6,86 ./. ./. ./. ./. ./. ./. ./. 0/1:1,1:2:15.67:16,0,27 ./. ./. 0/1:4,1:5:12.66:13,0,68 0/0:2,1:3:6.02:0,6,70 1/1:1,1:2:3.01:33,3,0 0/1:0,1:2:1.76:22,3,0 ./. 0/0:5,0:5:12.03:0,12,142 0/0:9,0:9:27.08:0,27,317 0/0:7,0:7:18.05:0,18,214 ./. ./. ./. ./. ./. ./. ./. 0/0:2,0:2:6.02:0,6,69 0/0:2,0:2:6.01:0,6,58 0/0:1,0:1:3.01:0,3,38 0/1:1,1:2:15.67:16,0,27 1/1:0,1:2:2.98:22,3,0 0/0:2,0:2:3:0,3,28 1/1:0,1:1:3.01:33,3,0 0/0:3,0:3:6.02:0,6,73 0/0:1,1:2:3.01:0,3,36 0/0:1,0:1:3.01:0,3,31 0/0:2,0:2:6.02:0,6,71 0/0:1,0:1:3:0,3,26 0/1:0,1:1:1.76:22,3,0 17 25783697 . G C 52.12 . AC=8;AF=0.174;AN=46;BaseQRankSum=0.755;DP=63;Dels=0.00;FS=2.980;HRun=1;HaplotypeScore=0.3806;InbreedingCoeff=0.3331;MQ=49.23;MQ0=3;MQRankSum=-3.510;QD=4.01;ReadPosRankSum=1.338 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,39 ./. 0/0:2,0:2:6.02:0,6,72 0/0:3,0:3:6.02:0,6,85 ./. ./. ./. ./. ./. ./. ./. 0/0:2,0:2:5.99:0,6,61 ./. ./. 0/1:4,1:5:12.66:13,0,73 0/0:2,1:3:6.02:0,6,77 1/1:1,1:2:3.01:33,3,0 0/1:1,1:2:1.76:22,3,0 ./. 0/0:5,0:5:12.04:0,12,158 0/0:9,0:9:27.08:0,27,328 0/0:8,0:8:18.06:0,18,240 ./. ./. ./. ./. ./. ./. ./. 0/0:2,0:2:6.02:0,6,76 0/0:2,0:2:6.02:0,6,66 0/0:1,0:1:3.01:0,3,38 0/0:2,0:2:5.99:0,6,59 0/1:1,1:2:1.76:22,3,0 0/0:2,0:2:3.01:0,3,39 1/1:0,1:1:3.01:33,3,0 0/0:2,0:2:6.02:0,6,76 0/0:2,0:2:3.01:0,3,37 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:6.02:0,6,73 ./. 0/1:0,1:1:1.76:22,3,0 17 25783710 . A G 37.85 . AC=8;AF=0.138;AN=58;BaseQRankSum=2.534;DP=117;Dels=0.00;FS=2.627;HRun=1;HaplotypeScore=0.8354;InbreedingCoeff=-0.0964;MQ=41.97;MQ0=10;MQRankSum=-2.572;QD=1.31;ReadPosRankSum=1.666 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,67 0/0:1,0:1:2.98:0,3,22 0/1:3,1:4:24.41:24,0,55 0/0:3,0:3:6.02:0,6,75 0/0:1,0:1:3.01:0,3,35 ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,30 ./. 0/0:6,0:6:9:0,9,96 ./. ./. 0/0:6,0:6:12.03:0,12,139 0/1:4,2:6:12.66:13,0,67 0/1:3,1:4:23.61:27,0,24 0/1:2,1:3:15.70:16,0,16 0/0:2,0:2:3.01:0,3,32 0/0:9,0:9:24.07:0,24,285 0/0:11,0:11:21.06:0,21,252 0/0:11,0:11:27.08:0,27,333 0/0:1,0:1:2.98:0,3,22 ./. ./. ./. 0/0:2,0:2:3.01:0,3,33 ./. ./. 0/0:3,0:3:9.03:0,9,113 0/0:2,0:2:6.02:0,6,70 0/0:4,0:4:12.04:0,12,145 0/1:4,1:5:18.45:18,0,103 1/1:1,2:3:2.98:22,3,0 0/0:3,0:3:6.02:0,6,76 0/0:5,0:5:12.01:0,12,126 0/0:6,0:6:14.98:0,15,141 0/0:4,0:4:5.99:0,6,59 0/0:2,0:2:5.99:0,6,59 0/0:1,0:1:3.01:0,3,38 0/1:3,1:4:12.66:13,0,67 ./. 17 25783718 . G A 48.20 . AC=9;AF=0.141;AN=64;BaseQRankSum=-2.326;DP=136;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9672;InbreedingCoeff=-0.1262;MQ=43.45;MQ0=10;MQRankSum=-3.821;QD=1.61;ReadPosRankSum=1.445 GT:AD:DP:GQ:PL 0/0:3,0:3:9.03:0,9,108 0/1:1,1:2:15.67:16,0,33 0/0:3,1:4:9.03:0,9,102 0/0:3,0:3:6.02:0,6,80 0/0:1,0:1:3.01:0,3,40 0/0:1,0:1:3.01:0,3,38 ./. 0/0:2,0:2:6.02:0,6,72 ./. 0/1:0,1:1:1.76:30,3,0 ./. 0/0:5,0:5:2.98:0,3,22 0/0:1,0:1:3.01:0,3,39 ./. 0/0:7,0:7:15.03:0,15,167 0/0:7,0:7:12.01:0,12,137 0/0:4,0:4:6.01:0,6,62 0/1:1,1:2:15.70:16,0,16 0/0:3,0:3:6.02:0,6,68 0/0:10,0:10:30.07:0,30,355 0/0:11,0:11:24.07:0,24,288 0/0:15,0:15:36.11:0,36,452 0/1:1,1:2:15.67:16,0,34 ./. ./. ./. 0/0:2,0:2:3.01:0,3,33 ./. ./. 0/0:3,0:3:9.03:0,9,116 0/0:2,0:2:6.02:0,6,75 0/0:6,0:6:18.06:0,18,234 0/1:5,1:6:3.66:4,0,156 0/0:3,0:3:2.98:0,3,22 0/0:3,0:3:6.02:0,6,71 0/1:4,1:5:9.65:10,0,95 0/1:3,2:6:31.34:31,0,60 0/1:3,1:4:15.67:16,0,33 0/1:1,1:2:15.67:16,0,26 0/0:2,0:2:5.99:0,6,61 0/0:4,1:5:6.02:0,6,77 ./. 17 25783721 . G A 56.94 . AC=8;AF=0.118;AN=68;BaseQRankSum=3.280;DP=146;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8021;InbreedingCoeff=-0.0902;MQ=44.32;MQ0=10;MQRankSum=-3.198;QD=2.37;ReadPosRankSum=0.569 GT:AD:DP:GQ:PL 0/0:2,0:2:3.01:0,3,32 0/0:3,0:3:8.99:0,9,84 0/0:5,0:5:12.03:0,12,133 0/0:3,0:3:6.02:0,6,80 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,36 0/0:1,0:1:3:0,3,26 0/0:3,0:3:9.02:0,9,99 ./. 1/1:0,1:1:3.01:30,3,0 ./. 0/0:6,1:7:8.98:0,9,75 0/0:1,0:1:3.01:0,3,32 ./. 0/0:7,0:7:12.03:0,12,135 0/0:7,0:7:12.01:0,12,128 0/1:3,1:4:23.61:24,0,24 0/1:1,1:2:15.70:16,0,16 0/0:3,0:3:6.01:0,6,63 0/0:11,0:11:27.07:0,27,292 0/0:10,0:10:18.04:0,18,195 0/0:15,0:15:39.10:0,39,445 0/1:1,1:2:15.67:16,0,30 ./. ./. 0/0:1,0:1:3:0,3,29 0/0:2,0:2:3.01:0,3,32 ./. ./. 0/0:3,0:3:9.03:0,9,105 0/0:2,0:2:6.02:0,6,67 0/0:9,0:9:27.07:0,27,296 0/0:6,1:7:2.69:1,0,160 0/0:3,0:3:2.98:0,3,22 0/0:4,0:4:6.02:0,6,76 0/1:2,3:5:47.45:47,0,51 0/1:5,1:6:6.68:7,0,105 0/1:3,1:4:15.67:16,0,27 0/0:2,0:2:5.99:0,6,57 0/0:2,0:2:5.99:0,6,62 0/0:4,1:5:9:0,9,92 ./. 17 25783756 . C T 161.68 . AC=19;AF=0.226;AN=84;BaseQRankSum=-4.546;DP=434;Dels=0.00;FS=1.799;HRun=0;HaplotypeScore=1.4815;InbreedingCoeff=-0.3217;MQ=44.41;MQ0=13;MQRankSum=-9.704;QD=0.97;ReadPosRankSum=-0.625 GT:AD:DP:GQ:PL 0/1:6,1:7:15.11:15,0,171 0/0:6,1:7:2.68:1,0,159 0/1:8,2:10:11.57:12,0,151 0/0:13,2:15:6.45:0,6,357 0/1:11,2:13:16.33:16,0,221 0/0:5,0:6:12.04:0,12,158 0/0:9,0:9:21.03:0,21,220 0/0:6,0:6:9.03:0,9,112 0/1:4,3:7:12.67:13,0,57 0/1:8,1:9:9.67:10,0,128 0/1:3,2:5:41.26:41,0,94 0/1:7,3:10:3.67:4,0,147 0/1:5,1:6:6.66:7,0,121 0/1:6,2:9:31.08:31,0,187 0/0:22,2:26:59.97:0,60,593 0/1:17,3:20:6.45:6,0,207 0/1:7,3:10:5.63:6,0,189 0/0:8,1:9:2.68:1,0,155 0/1:4,1:5:15.67:16,0,28 0/0:13,0:13:27.03:0,27,298 0/0:15,2:17:27.03:0,27,281 0/0:15,3:18:4.73:0,5,357 0/0:19,0:20:42.08:0,42,498 0/0:5,1:6:12:0,12,128 0/0:5,1:6:12.03:0,12,138 0/0:5,0:5:12.03:0,12,143 0/1:7,1:8:6.60:7,0,206 0/1:8,3:11:38.06:38,0,144 0/1:5,3:8:14.59:15,0,120 0/1:7,1:8:12.38:12,0,185 0/0:6,1:8:14.99:0,15,156 0/0:12,1:14:29.98:0,30,295 0/0:13,2:15:2.32:0,2,198 0/1:5,2:7:9.71:10,0,110 0/0:9,1:10:27:0,27,270 0/0:9,2:11:21.06:0,21,251 0/0:10,1:12:26.96:0,27,251 0/0:9,2:13:24.05:0,24,282 0/1:6,2:8:30.25:30,0,168 0/0:11,1:13:21.01:0,21,218 0/1:5,1:6:20.60:21,0,52 0/0:7,1:8:1.55:4,0,150 17 25783764 . C T 266.73 . AC=18;AF=0.214;AN=84;BaseQRankSum=-4.587;DP=517;Dels=0.00;FS=28.410;HRun=0;HaplotypeScore=1.4030;InbreedingCoeff=-0.3150;MQ=44.30;MQ0=33;MQRankSum=-8.539;QD=1.13;ReadPosRankSum=4.163 GT:AD:DP:GQ:PL 0/0:11,2:13:3.44:0,3,302 0/0:11,1:12:2.35:0,2,216 0/0:12,0:12:27.04:0,27,292 0/0:17,1:18:20.43:0,20,443 0/0:11,2:13:5.33:0,5,231 0/0:8,0:9:24.07:0,24,296 0/1:8,4:12:58.47:58,0,232 0/0:6,0:8:18.06:0,18,228 0/0:10,0:10:15.01:0,15,154 0/1:7,2:9:19.32:19,0,171 0/0:6,0:6:15.04:0,15,170 0/0:13,1:14:5.35:0,5,237 0/0:7,0:8:18:0,18,182 0/0:8,1:9:2.32:0,2,195 0/1:23,4:29:4.97:5,0,489 0/0:15,6:22:1.37:4,0,319 0/1:10,2:12:31.06:31,0,172 0/1:7,2:9:6.69:7,0,105 0/0:5,0:5:2.98:0,3,22 0/1:10,2:13:29.19:29,0,245 0/1:14,2:18:27.25:27,0,184 0/0:20,0:20:33.08:0,33,387 0/0:18,1:19:29.39:0,29,501 0/0:6,1:7:12.03:0,12,136 0/0:8,0:9:12.03:0,12,136 0/1:5,1:6:11.59:12,0,145 0/1:8,1:9:11.19:11,0,216 0/1:14,4:18:24.96:25,0,361 0/0:9,0:9:18.04:0,18,192 0/0:7,0:7:21.06:0,21,259 0/1:10,3:13:38.02:38,0,184 0/1:18,2:21:7.33:7,0,296 0/0:17,3:20:1.66:0,2,381 0/1:6,2:8:25.33:25,0,126 0/1:8,1:9:4.68:5,0,169 0/1:11,2:13:6.40:6,0,231 0/1:10,2:13:16.34:16,0,196 0/0:13,0:13:27.03:0,27,289 0/0:11,0:11:27.05:0,27,303 0/1:10,3:14:57.72:58,0,180 0/0:6,0:7:9.02:0,9,101 0/1:8,2:10:32.21:32,0,143 17 25783776 . G A 93.16 . AC=10;AF=0.119;AN=84;BaseQRankSum=6.388;DP=688;Dels=0.00;FS=51.812;HRun=0;HaplotypeScore=2.6286;InbreedingCoeff=-0.1763;MQ=45.03;MQ0=53;MQRankSum=-8.427;QD=0.58;ReadPosRankSum=2.739 GT:AD:DP:GQ:PL 0/0:18,2:20:15.47:0,15,409 0/0:12,1:13:11.36:0,11,288 0/0:12,1:14:2.65:0,3,307 0/0:29,0:29:75.14:0,75,799 0/0:15,2:17:23.37:0,23,418 0/0:14,0:14:33.07:0,33,367 0/0:11,2:14:0.90:6,0,248 0/0:13,0:13:33.06:0,33,353 0/0:13,0:14:24.03:0,24,238 0/1:12,2:14:10.31:10,0,244 0/0:10,0:10:24.05:0,24,257 0/0:14,1:16:8.34:0,8,263 0/0:9,0:9:21.03:0,21,214 0/0:13,1:14:14.37:0,14,314 0/0:32,6:39:16.08:0,16,673 0/0:23,4:27:7.73:0,8,432 0/1:12,2:14:6.40:6,0,211 0/1:9,2:12:22.35:22,0,134 0/0:10,0:10:24.03:0,24,250 0/1:21,3:24:8.13:8,0,441 0/1:21,2:24:12.22:12,0,323 0/0:18,0:18:39.05:0,39,410 0/0:20,1:23:38.41:0,38,574 0/0:10,0:10:24.04:0,24,259 0/0:14,0:14:27.06:0,27,299 0/0:11,0:12:30.08:0,30,330 0/0:14,1:15:5.12:0,5,370 0/0:19,3:22:13.66:0,14,452 0/0:11,1:12:18.04:0,18,198 0/0:11,0:11:30.07:0,30,329 0/0:15,3:18:20.38:0,20,377 0/0:21,1:22:29.36:0,29,448 0/1:21,4:25:32.42:32,0,487 0/1:8,2:10:19.33:19,0,160 0/1:9,2:11:8.61:9,0,154 0/0:17,2:19:2.84:0,0,279 0/0:17,3:21:1.37:4,0,294 0/0:17,0:17:39.09:0,39,412 0/0:11,0:11:27.05:0,27,277 0/1:10,3:14:54.72:55,0,192 0/0:10,0:10:21.05:0,21,223 0/1:9,3:12:35.02:35,0,126 17 25974061 . G T 1417.52 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.365;DP=4385;DS;Dels=0.00;FS=2.010;HRun=1;HaplotypeScore=4.6455;InbreedingCoeff=-0.0120;MQ=58.24;MQ0=0;MQRankSum=2.990;QD=16.11;ReadPosRankSum=1.287 GT:AD:DP:GQ:PL 0/0:93,0:93:99:0,259,3237 0/0:80,0:80:99:0,223,2787 0/0:65,0:65:99:0,175,2210 0/0:179,0:179:99:0,472,6289 0/0:134,0:134:99:0,367,4975 0/0:122,0:122:99:0,340,4494 0/1:38,50:88:99:1464,0,1197 0/0:123,0:123:99:0,331,4399 0/0:74,0:74:99:0,214,2660 0/0:78,0:78:99:0,211,2651 0/0:83,0:83:99:0,229,2868 0/0:76,0:76:99:0,214,2653 0/0:78,0:78:99:0,193,2427 0/0:89,0:89:99:0,250,3139 0/0:249,0:250:99:0,656,8356 0/0:88,0:90:99:0,256,3154 0/0:98,0:98:99:0,283,3547 0/0:95,0:95:99:0,268,3350 0/0:98,0:98:99:0,262,3293 0/0:157,0:157:99:0,409,5270 0/0:108,0:108:99:0,289,3653 0/0:109,0:109:99:0,283,3610 0/0:158,0:158:99:0,430,5839 0/0:106,0:106:99:0,277,3709 0/0:125,1:126:99:0,304,4469 0/0:109,0:109:99:0,280,3764 0/0:61,0:61:99:0,172,2140 0/0:98,0:98:99:0,265,3345 0/0:98,0:98:99:0,274,3403 0/0:97,0:97:99:0,265,3277 0/0:77,0:77:99:0,211,2627 0/0:137,0:137:99:0,343,4384 0/0:93,0:93:99:0,256,3193 0/0:69,0:69:99:0,184,2280 0/0:100,0:100:99:0,271,3376 0/0:96,0:97:99:0,265,3310 0/0:127,0:127:99:0,337,4234 0/0:96,1:97:99:0,221,3133 0/0:92,1:93:99:0,247,3108 0/0:92,1:93:99:0,229,3114 0/0:99,1:100:99:0,252,3479 0/0:82,0:82:99:0,223,2798 17 26087758 . G A 16.83 . AC=3;AF=0.042;AN=72;BaseQRankSum=-3.302;DP=144;Dels=0.00;FS=21.486;HRun=2;HaplotypeScore=0.3124;InbreedingCoeff=0.0332;MQ=55.04;MQ0=3;MQRankSum=0.254;QD=0.84;ReadPosRankSum=-2.254 GT:AD:DP:GQ:PL 0/1:1,1:2:21.65:26,0,22 0/0:5,1:6:12.03:0,12,142 0/0:4,1:5:9.01:0,9,98 0/0:2,1:3:5.97:0,6,45 ./. 0/0:1,1:2:3:0,3,25 0/0:1,0:1:3.01:0,3,41 ./. 0/0:2,2:4:6.02:0,6,79 0/0:4,2:6:9.02:0,9,97 ./. 0/0:2,0:2:3.01:0,3,32 0/0:1,0:1:3.01:0,3,31 0/0:2,1:3:6.02:0,6,78 0/1:14,3:17:27.77:28,0,352 0/0:1,0:1:3.01:0,3,39 0/1:0,1:1:1.76:34,3,0 0/0:3,0:3:6:0,6,62 0/0:6,3:9:12.03:0,12,140 0/0:4,0:4:9.03:0,9,106 0/0:5,0:5:12.02:0,12,141 0/0:4,1:5:12.03:0,12,133 0/0:2,0:2:6.01:0,6,69 ./. ./. ./. 0/0:2,0:2:3.01:0,3,37 0/0:3,0:3:6.02:0,6,76 0/0:4,0:4:12.04:0,12,149 0/0:2,0:2:6.02:0,6,71 0/0:1,1:2:3.01:0,3,32 0/0:4,1:5:3.01:0,3,36 0/0:3,2:5:3.01:0,3,39 0/0:4,0:4:6.02:0,6,77 0/0:6,0:6:12.04:0,12,146 0/0:1,1:2:3.01:0,3,34 0/0:8,0:8:18.04:0,18,205 0/0:3,0:3:9.03:0,9,111 0/0:2,0:2:6.01:0,6,68 0/0:2,1:3:0.47:0,0,1 0/0:3,0:3:6.02:0,6,70 0/0:3,2:5:9:0,9,92 17 26088237 . G A 272.49 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.561;DP=613;Dels=0.00;FS=2.703;HRun=0;HaplotypeScore=0.7068;InbreedingCoeff=-0.0295;MQ=49.51;MQ0=30;MQRankSum=-1.326;QD=7.36;ReadPosRankSum=-0.479 GT:AD:DP:GQ:PL 0/0:11,0:11:27.07:0,27,312 0/0:10,0:10:24.04:0,24,268 0/0:7,0:7:6.01:0,6,72 0/0:27,0:28:63.17:0,63,792 0/0:33,0:33:81.25:0,81,1062 0/1:12,8:20:99:197,0,350 0/0:15,0:15:39.09:0,39,482 0/1:12,5:17:99:138,0,335 0/0:9,0:9:27.07:0,27,323 0/0:6,0:6:15.03:0,15,178 0/0:13,0:13:30.08:0,30,370 0/0:12,0:12:30.10:0,30,387 0/0:12,0:12:33.06:0,33,376 0/0:13,0:13:24.04:0,24,272 0/0:46,0:46:99:0,102,1275 0/0:14,0:14:36.07:0,36,411 0/0:14,0:14:33.09:0,33,406 0/0:8,0:8:18.06:0,18,229 0/0:12,0:12:30.09:0,30,352 0/0:26,0:26:63.17:0,63,766 0/0:28,0:28:69.18:0,69,825 0/0:12,0:12:33.10:0,33,403 0/0:19,0:19:42.12:0,42,529 0/0:14,0:14:33.11:0,33,445 0/0:14,0:14:30.08:0,30,369 0/0:16,0:16:36.11:0,36,480 0/0:6,0:7:15.05:0,15,182 0/0:14,0:14:33.07:0,33,399 0/0:7,0:7:12.04:0,12,153 0/0:7,0:7:21.06:0,21,249 0/0:9,0:9:27.04:0,27,303 0/0:14,0:14:30.05:0,30,351 0/0:18,0:18:48.14:0,48,585 0/0:12,0:12:27.03:0,27,306 0/0:11,0:11:27.07:0,27,339 0/0:9,0:10:18.05:0,18,214 0/0:18,0:18:42.09:0,42,506 0/0:12,0:12:33.10:0,33,403 0/0:10,0:10:24.08:0,24,302 0/0:8,0:8:18.06:0,18,237 0/0:13,0:13:27.07:0,27,334 0/0:14,0:14:36.05:0,36,416 17 26091020 . T C 10.37 . AC=2;AF=0.024;AN=84;BaseQRankSum=-12.167;DP=964;Dels=0.00;FS=283.137;HRun=2;HaplotypeScore=0.3537;InbreedingCoeff=-0.0601;MQ=43.59;MQ0=92;MQRankSum=-3.918;QD=0.13;ReadPosRankSum=-10.730 GT:AD:DP:GQ:PL 0/0:12,3:15:1.33:4,0,272 0/0:9,1:10:21.07:0,21,257 0/0:12,1:14:27.09:0,27,343 0/0:25,16:41:36.58:0,37,762 0/0:29,10:39:11.85:0,12,709 0/0:16,7:23:39.12:0,39,498 0/0:20,3:23:45.11:0,45,574 0/0:15,5:20:36.11:0,36,460 0/0:20,4:24:57.15:0,57,695 0/0:9,1:10:18.05:0,18,217 0/0:16,2:18:45.13:0,45,543 0/0:15,4:19:4.56:0,5,381 0/0:22,3:25:22.23:0,22,492 0/0:20,3:23:48.12:0,48,575 0/0:43,7:51:82.93:0,83,1293 0/0:15,3:18:0.49:9,0,439 0/0:12,4:16:32.84:0,33,385 0/0:18,1:19:48.15:0,48,586 0/0:31,0:31:72.22:0,72,892 0/0:35,9:44:62.07:0,62,777 0/1:25,14:39:46.83:47,0,711 0/0:12,3:15:18.05:0,18,204 0/0:31,12:43:33.56:0,34,698 0/0:28,3:31:61.42:0,61,767 0/0:29,9:38:38.45:0,38,693 0/0:22,9:31:42.13:0,42,517 0/0:16,1:17:36.10:0,36,432 0/0:7,0:7:12.03:0,12,149 0/0:7,3:10:18.05:0,18,219 0/0:12,3:15:24.08:0,24,305 0/0:12,1:13:27.08:0,27,323 0/0:27,9:37:55.64:0,56,658 0/0:22,6:28:27.55:0,28,628 0/0:17,3:20:36.07:0,36,403 0/0:3,3:6:6.01:0,6,64 0/0:10,5:15:27.09:0,27,340 0/1:31,9:40:22.17:22,0,820 0/0:17,2:19:39.12:0,39,492 0/0:17,0:17:51.13:0,51,605 0/0:11,2:13:24.08:0,24,302 0/0:16,0:16:36.10:0,36,434 0/0:9,2:11:0.38:0,0,240 17 26666692 . C T 1466.82 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.367;DP=2525;Dels=0.00;FS=6.215;HRun=0;HaplotypeScore=2.8050;InbreedingCoeff=-0.0120;MQ=58.14;MQ0=0;MQRankSum=3.310;QD=12.22;ReadPosRankSum=2.890 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,102,1300 0/0:41,0:41:99:0,102,1273 0/0:38,0:38:99:0,105,1307 0/0:118,0:118:99:0,292,3905 0/1:60,60:120:99:1513,0,1802 0/0:97,0:97:99:0,235,3110 0/0:63,0:63:99:0,169,2216 0/0:89,0:89:99:0,220,2951 0/0:55,0:55:99:0,147,1822 0/0:38,0:39:99:0,105,1313 0/0:44,0:44:99:0,117,1468 0/0:49,0:49:99:0,120,1510 0/0:41,0:41:99:0,105,1344 0/0:36,0:36:90.27:0,90,1138 0/0:152,1:153:99:0,346,4675 0/0:47,0:47:99:0,129,1575 0/0:42,0:42:99:0,114,1416 0/0:32,0:32:90.28:0,90,1129 0/0:70,0:70:99:0,184,2255 0/0:75,0:75:99:0,196,2470 0/0:86,0:86:99:0,226,2714 0/0:57,0:57:99:0,138,1768 0/0:135,0:135:99:0,337,4458 0/0:79,0:79:99:0,187,2549 0/0:75,0:75:99:0,196,2612 0/0:74,0:75:99:0,199,2634 0/0:29,0:29:87.27:0,87,1084 0/0:42,0:42:99:0,111,1371 0/0:19,0:19:48.15:0,48,601 0/0:39,0:39:99:0,108,1357 0/0:38,0:38:99:0,102,1287 0/0:78,0:78:99:0,172,2250 0/0:70,1:71:99:0,169,2390 0/0:53,0:53:99:0,153,1894 0/0:39,0:39:99:0,111,1375 0/0:44,0:44:99:0,117,1456 0/0:65,1:67:99:0,168,2080 0/0:39,0:39:99:0,99,1254 0/0:38,0:38:99:0,105,1293 0/0:53,0:53:99:0,135,1698 0/0:42,1:43:75.78:0,76,1358 0/0:35,0:35:99:0,105,1304 17 26671484 . C A 170.83 . AC=8;AF=0.095;AN=84;BaseQRankSum=-12.123;DP=1394;Dels=0.00;FS=415.068;HRun=2;HaplotypeScore=0.9559;InbreedingCoeff=-0.1179;MQ=58.38;MQ0=0;MQRankSum=2.134;QD=0.88;ReadPosRankSum=-9.551 GT:AD:DP:GQ:PL 0/0:26,7:33:38.79:0,39,809 0/0:19,5:24:54.15:0,54,648 0/0:19,5:24:38.48:0,38,648 0/0:59,24:83:99:0,108,2007 0/0:43,16:59:99:0,105,1635 0/0:39,12:51:50.49:0,50,1372 0/0:27,11:38:75.22:0,75,942 0/0:24,7:31:63.16:0,63,789 0/1:22,10:32:18.68:19,0,658 0/0:10,5:15:1.38:4,0,282 0/1:10,11:21:51.80:52,0,275 0/0:16,7:23:19.43:0,19,448 0/1:13,6:19:51.05:51,0,422 0/0:20,6:26:54.19:0,54,614 0/0:43,23:66:87.86:0,88,1393 0/0:20,12:32:37.48:0,37,665 0/0:20,11:31:25.55:0,26,616 0/1:15,5:20:5.97:6,0,508 0/0:30,6:36:51.07:0,51,938 0/0:41,8:49:64.04:0,64,1119 0/0:26,11:37:7.65:0,8,758 0/0:27,2:29:72.21:0,72,867 0/0:52,18:70:99:0,116,1866 0/1:15,12:27:72.77:73,0,455 0/0:34,8:42:78.62:0,79,1243 0/0:23,14:37:20.39:0,20,701 0/0:14,4:18:22.43:0,22,472 0/0:14,7:21:12.62:0,13,455 0/1:24,9:33:44.88:45,0,719 0/0:28,9:37:17.34:0,17,842 0/0:22,8:30:10.26:0,10,708 0/0:46,14:60:69:0,69,1361 0/0:16,8:24:14.71:0,15,517 0/0:24,5:29:69.20:0,69,829 0/0:15,7:22:35.15:0,35,405 0/0:21,4:25:28.63:0,29,658 0/0:22,4:26:66.19:0,66,778 0/0:13,10:23:33.09:0,33,387 0/1:14,8:22:19.61:20,0,457 0/0:18,8:26:45.13:0,45,531 0/1:14,6:21:20.55:21,0,446 0/0:18,4:22:51.16:0,51,621 17 26684770 . T TA 96.59 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.070;DP=2640;FS=878.499;HRun=1;HaplotypeScore=176.9657;InbreedingCoeff=-0.0529;MQ=58.79;MQ0=0;MQRankSum=2.516;QD=1.10;ReadPosRankSum=-12.909 GT:AD:DP:GQ:PL 0/0:41,1:42:51.82:0,52,1089 0/0:34,0:34:25.05:0,25,835 0/0:27,0:27:31.31:0,31,738 0/0:196,0:196:50.30:0,50,4812 0/0:171,12:183:99:0,340,5031 0/0:123,0:120:99:0,105,3152 0/0:86,0:85:99:0,118,2106 0/0:90,0:87:99:0,172,2364 0/0:37,0:37:47.63:0,48,956 0/0:25,0:25:66.12:0,66,804 0/0:38,3:41:29.43:0,29,1147 0/0:33,0:33:27.47:0,27,855 0/0:34,0:34:43.83:0,44,823 0/0:45,0:45:71.16:0,71,1197 0/0:106,17:123:54:0,54,2778 0/0:35,0:35:0.56:9,0,729 0/0:45,0:45:9.72:0,10,1041 0/0:27,0:27:35.22:0,35,807 0/0:52,0:52:93.97:0,94,1283 0/0:64,0:64:99:0,131,1936 0/0:87,1:88:66.19:0,66,2207 0/0:57,0:57:63.77:0,64,1507 0/0:197,0:197:99:0,159,5107 0/0:86,0:82:99:0,144,2221 0/0:138,0:137:99:0,223,3637 0/0:99,0:98:88.69:0,89,2570 0/0:31,0:31:18.57:0,19,708 0/0:49,0:49:73.14:0,73,1395 0/0:28,0:28:31.63:0,32,698 0/0:39,0:39:24.92:0,25,1014 0/0:42,6:48:3.56:0,4,1144 0/0:80,0:80:99:0,102,2190 0/0:48,0:48:2.86:0,0,1129 0/0:29,0:29:60.05:0,60,936 0/0:33,0:33:28.16:0,28,734 0/0:33,0:33:64.19:0,64,963 0/1:45,13:58:99:141,0,1006 0/0:24,7:31:1.75:0,2,700 0/1:30,0:30:24.88:25,0,650 0/0:39,0:39:56.30:0,56,997 0/0:24,0:24:62.04:0,62,712 0/0:33,0:33:85.80:0,86,1044 17 26727707 . T G 32.54 . AC=5;AF=0.060;AN=84;BaseQRankSum=-4.590;DP=735;Dels=0.00;FS=487.252;HRun=3;HaplotypeScore=0.4230;InbreedingCoeff=-0.1096;MQ=59.64;MQ0=0;MQRankSum=-1.075;QD=0.64;ReadPosRankSum=-8.656 GT:AD:DP:GQ:PL 0/0:12,3:15:2.98:0,3,381 0/0:10,1:11:1.97:2,0,288 0/0:6,1:7:12.59:0,13,174 0/0:48,2:50:99:0,114,1598 0/0:33,2:35:91.50:0,91,1063 0/0:31,1:32:71.59:0,72,1099 0/0:20,4:24:23.74:0,24,616 0/0:20,0:20:60.18:0,60,707 0/0:8,3:11:24.06:0,24,265 0/0:9,0:9:27.07:0,27,307 0/0:9,1:10:27.08:0,27,320 0/0:10,0:10:30.05:0,30,321 0/0:5,2:7:5.51:0,6,132 0/0:6,2:8:18.05:0,18,208 0/0:34,10:44:35.32:0,35,1046 0/1:6,2:8:12.39:12,0,179 0/0:15,2:17:8.13:0,8,437 0/0:5,0:5:15.04:0,15,175 0/0:13,0:13:36.11:0,36,432 0/0:23,4:27:65.21:0,65,735 0/1:16,5:21:40.91:41,0,469 0/0:20,6:26:1.81:3,0,605 0/0:45,1:46:99:0,132,1519 0/0:30,0:30:87.26:0,87,1031 0/0:36,0:36:99:0,108,1252 0/0:28,1:29:81.23:0,81,936 0/0:7,1:8:1.07:6,0,218 0/0:12,1:13:36.11:0,36,421 0/0:5,1:6:12.51:0,13,140 0/0:9,1:10:27.08:0,27,317 0/0:10,0:10:27.05:0,27,300 0/0:14,1:15:42.12:0,42,490 0/0:22,5:27:31.43:0,31,694 0/0:7,0:7:21.06:0,21,246 0/0:9,3:12:2.43:0,2,259 0/1:8,3:11:29.10:29,0,246 0/0:15,5:20:11.50:0,12,462 0/1:3,1:4:21.57:22,0,63 0/0:12,0:12:36.09:0,36,405 0/1:5,2:7:18.07:18,0,162 0/0:11,1:12:33.10:0,33,389 0/0:9,1:10:27.08:0,27,316 17 26727721 . GA G 21790.20 . AC=84;AF=1.000;AN=84;DP=581;FS=0.000;HRun=2;HaplotypeScore=35.8427;InbreedingCoeff=-0.0056;MQ=60.06;MQ0=0;QD=37.50 GT:AD:DP:GQ:PL 1/1:0,11:11:33.11:429,33,0 1/1:1,6:7:18.06:234,18,0 1/1:0,7:7:21.07:271,21,0 1/1:0,40:40:99:1545,120,0 1/1:0,31:31:93.30:1200,93,0 1/1:2,26:28:78.24:996,78,0 1/1:1,18:19:54.17:694,54,0 1/1:0,16:16:48.14:609,48,0 1/1:1,5:6:15.05:195,15,0 1/1:0,6:6:18.06:234,18,0 1/1:1,6:7:18.05:221,18,0 1/1:0,10:10:30.10:390,30,0 1/1:0,5:5:15.05:195,15,0 1/1:1,6:7:18.06:234,18,0 1/1:0,29:29:87.28:1130,87,0 1/1:0,7:7:21.07:273,21,0 1/1:0,15:15:45.15:584,45,0 1/1:0,3:3:9.03:117,9,0 1/1:0,12:12:33.11:428,33,0 1/1:0,24:24:72.23:935,72,0 1/1:0,12:12:33.10:415,33,0 1/1:1,19:20:57.19:741,57,0 1/1:2,38:40:99:1472,114,0 1/1:1,22:23:66.21:851,66,0 1/1:2,29:31:90.28:1154,90,0 1/1:0,18:18:54.18:700,54,0 1/1:0,7:7:21.07:270,21,0 1/1:0,9:9:27.09:351,27,0 1/1:0,3:3:9.03:117,9,0 1/1:0,6:6:18.06:233,18,0 1/1:0,9:9:27.09:351,27,0 1/1:0,12:12:36.12:468,36,0 1/1:0,16:16:48.15:612,48,0 1/1:0,7:7:21.07:272,21,0 1/1:0,10:10:30.10:390,30,0 1/1:0,10:10:30.09:372,30,0 1/1:0,17:17:51.17:662,51,0 1/1:0,5:5:15.05:195,15,0 1/1:1,9:10:24.08:312,24,0 1/1:0,7:7:18.06:234,18,0 1/1:0,13:13:39.11:481,39,0 1/1:0,6:6:18.05:225,18,0 17 26733080 . G C 9.12 . AC=3;AF=0.036;AN=84;BaseQRankSum=-4.864;DP=305;Dels=0.00;FS=2.284;HRun=1;HaplotypeScore=0.2215;InbreedingCoeff=0.0754;MQ=57.29;MQ0=0;MQRankSum=1.071;QD=0.46;ReadPosRankSum=-1.977 GT:AD:DP:GQ:PL 0/0:3,0:3:9.01:0,9,88 0/0:7,0:7:9.02:0,9,93 0/0:3,0:3:9.03:0,9,113 0/0:10,1:11:15.02:0,15,161 0/0:13,1:14:27.04:0,27,297 0/0:11,1:12:20.95:0,21,226 0/0:11,1:12:27.05:0,27,308 0/0:8,1:9:15.04:0,15,180 0/0:4,0:4:6.02:0,6,83 0/0:5,0:5:12.03:0,12,141 0/1:3,1:4:20.67:21,0,27 0/0:4,0:4:3.01:0,3,32 0/0:1,0:1:3.01:0,3,35 0/0:4,0:4:12.03:0,12,140 0/0:15,5:20:6.59:0,7,374 0/0:4,0:4:3.01:0,3,36 0/0:3,0:3:9.01:0,9,91 0/0:3,0:3:5.99:0,6,59 0/0:9,2:11:17.50:0,17,164 0/0:14,0:14:27.04:0,27,306 0/1:4,6:10:0.97:50,6,0 0/0:14,1:15:21.05:0,21,239 0/0:19,0:19:39.10:0,39,468 0/0:6,1:8:15.04:0,15,181 0/0:3,3:7:3.01:0,3,38 0/0:6,0:6:15.03:0,15,162 0/0:3,0:3:3.01:0,3,36 0/0:1,0:1:3:0,3,29 0/0:4,0:4:9.02:0,9,104 0/0:1,2:3:3:0,3,29 0/0:4,2:6:9.03:0,9,108 0/0:7,1:8:15.05:0,15,194 0/0:7,1:9:18.03:0,18,199 0/0:2,2:4:6:0,6,61 0/0:5,0:5:12.03:0,12,136 0/0:7,4:11:12.03:0,12,139 0/0:10,2:12:1.59:4,0,231 0/1:5,1:6:11.65:12,0,120 0/0:2,0:2:6.02:0,6,70 0/0:6,1:7:12.03:0,12,149 0/0:3,4:7:9.02:0,9,90 0/0:4,0:4:9.02:0,9,91 17 26822695 . T TG 5974.84 . AC=42;AF=0.500;AN=84;BaseQRankSum=-10.019;DP=3346;FS=2029.506;HRun=3;HaplotypeScore=206.6420;InbreedingCoeff=-0.9768;MQ=57.52;MQ0=0;MQRankSum=1.989;QD=1.79;ReadPosRankSum=-17.934 GT:AD:DP:GQ:PL 0/1:46,0:46:99:113,0,727 0/1:64,0:63:99:155,0,687 0/1:45,0:45:41.53:42,0,707 0/1:164,0:164:99:369,0,2005 0/1:132,1:133:99:285,0,1691 0/1:101,1:97:25.20:25,0,1319 0/1:51,37:88:99:261,0,949 0/1:86,1:87:70.83:71,0,1454 0/1:77,0:77:99:201,0,952 0/1:47,0:47:99:108,0,529 0/1:43,26:68:59.16:59,0,671 0/1:51,0:51:99:115,0,647 0/1:60,0:60:99:155,0,803 0/1:55,0:56:56.92:57,0,680 0/1:116,76:192:99:303,0,2132 0/1:62,2:63:99:116,0,756 0/1:43,27:70:99:299,0,685 0/1:42,0:42:21.12:21,0,668 0/1:105,0:106:99:228,0,1644 0/1:116,0:116:99:162,0,1290 0/1:112,2:114:99:316,0,1452 0/1:81,0:80:21.87:22,0,1260 0/1:101,49:150:99:253,0,2142 0/1:78,0:76:49.69:50,0,1183 0/1:103,0:102:48.82:49,0,1708 0/1:76,0:76:5.75:6,0,1185 0/1:25,17:42:99:166,0,443 0/1:65,1:66:92.94:93,0,1052 0/1:37,19:56:83.38:83,0,700 0/1:67,0:67:80.46:80,0,773 0/1:74,0:74:99:335,0,792 0/1:102,0:102:99:285,0,1285 0/1:68,38:106:99:208,0,1115 0/1:54,0:54:4.45:4,0,794 0/1:41,20:62:99:116,0,744 0/1:53,1:54:99:129,0,696 0/1:113,0:113:99:292,0,1143 0/1:33,19:52:80.98:81,0,609 0/1:40,16:57:28.08:28,0,768 0/1:48,0:48:34.01:34,0,610 0/1:61,0:61:99:116,0,665 0/1:50,1:51:82.50:82,0,546 17 26822699 . A G 4342.52 . AC=29;AF=0.345;AN=84;BaseQRankSum=-15.494;DP=2788;Dels=0.00;FS=1134.913;HRun=3;HaplotypeScore=6.4639;InbreedingCoeff=-0.5385;MQ=58.23;MQ0=0;MQRankSum=-4.174;QD=2.13;ReadPosRankSum=-17.416 GT:AD:DP:GQ:PL 0/1:27,16:43:99:135,0,770 0/1:25,30:55:99:169,0,708 0/1:29,14:43:11.24:11,0,898 0/1:81,70:151:99:330,0,2406 0/1:59,60:119:99:381,0,1713 0/1:47,43:90:17.14:17,0,1506 0/0:48,12:60:85.02:0,85,1484 0/1:50,30:80:82.91:83,0,1449 0/1:33,41:74:99:192,0,989 0/1:22,23:45:99:126,0,649 0/0:32,7:39:61.56:0,62,976 0/1:22,18:40:57.95:58,0,691 0/1:33,23:56:99:141,0,1002 0/1:27,22:49:60.13:60,0,719 0/0:96,21:117:99:0,185,2772 0/1:29,24:54:56.79:57,0,696 0/0:34,16:50:75.23:0,75,897 0/1:24,17:41:76.01:76,0,689 0/1:65,33:98:99:229,0,1872 0/1:52,52:104:99:167,0,1492 0/1:56,39:95:99:356,0,1618 0/1:45,29:74:20.18:20,0,1341 0/0:91,16:107:99:0,244,2834 0/1:43,30:73:43.89:44,0,1295 0/1:54,40:94:60.14:60,0,1594 0/0:41,29:70:22.23:0,22,1333 0/0:26,6:33:51.15:0,51,603 0/1:40,22:62:99:103,0,1180 0/0:33,7:40:84.25:0,84,995 0/1:32,25:57:54.43:54,0,989 0/1:27,35:62:99:352,0,807 0/1:45,52:98:99:419,0,1280 0/0:61,17:78:99:0,123,1815 0/0:28,17:45:0.09:0,0,905 0/0:39,3:42:90.27:0,90,1069 0/1:25,24:49:99:124,0,767 0/1:49,46:95:99:308,0,1369 0/0:35,1:36:90.26:0,90,1047 0/0:31,5:36:81.21:0,81,941 0/1:26,18:44:43.82:44,0,746 0/1:23,24:47:99:156,0,695 0/1:19,24:43:68.16:68,0,557 17 26857788 . T C 7105.68 . AC=5;AF=0.060;AN=84;BaseQRankSum=16.191;DP=3881;Dels=0.00;FS=3.506;HRun=0;HaplotypeScore=1.5629;InbreedingCoeff=-0.0633;MQ=59.43;MQ0=0;MQRankSum=2.491;QD=15.12;ReadPosRankSum=-1.675 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,162,1977 0/0:85,0:85:99:0,214,2643 0/0:51,0:51:99:0,144,1763 0/0:174,0:174:99:0,430,5401 0/0:130,0:130:99:0,319,4068 0/0:146,0:146:99:0,361,4697 0/0:102,0:102:99:0,265,3349 0/0:128,0:128:99:0,307,3881 0/0:68,0:68:99:0,180,2167 0/0:58,0:58:99:0,153,1849 0/0:83,0:83:99:0,214,2647 0/1:23,29:52:99:838,0,635 0/1:29,25:54:99:760,0,846 0/0:75,0:75:99:0,205,2507 0/1:112,128:240:99:3610,0,2734 0/1:29,28:57:99:812,0,767 0/0:87,0:87:99:0,211,2662 0/0:51,0:51:99:0,147,1773 0/0:132,0:132:99:0,346,4294 0/0:133,0:133:99:0,331,4157 0/0:119,0:119:99:0,310,3833 0/0:76,0:76:99:0,196,2394 0/0:170,0:170:99:0,415,5253 0/0:112,0:112:99:0,292,3675 0/0:116,0:116:99:0,295,3749 0/0:106,0:106:99:0,265,3356 0/0:34,0:34:99:0,99,1185 0/0:72,0:72:99:0,193,2347 0/0:65,0:65:99:0,159,1986 0/0:74,0:74:99:0,184,2277 0/0:73,0:73:99:0,199,2425 0/0:117,0:118:99:0,298,3711 0/0:76,0:76:99:0,184,2294 0/0:74,0:74:99:0,187,2340 0/0:69,0:69:99:0,184,2267 0/0:83,0:83:99:0,229,2793 0/0:136,0:136:99:0,352,4350 0/0:72,0:72:99:0,184,2261 0/0:50,0:50:99:0,144,1745 0/0:76,0:76:99:0,211,2582 0/1:32,35:67:99:1086,0,846 0/0:76,0:76:99:0,217,2602 17 26881982 . G C 60.65 . AC=3;AF=0.036;AN=84;BaseQRankSum=-8.241;DP=1451;Dels=0.00;FS=71.888;HRun=1;HaplotypeScore=0.8657;InbreedingCoeff=-0.0809;MQ=58.70;MQ0=0;MQRankSum=-0.877;QD=0.74;ReadPosRankSum=-6.507 GT:AD:DP:GQ:PL 0/0:15,7:22:27.09:0,27,346 0/0:14,6:20:26.97:0,27,276 0/0:15,7:22:4.40:0,4,313 0/0:71,25:96:68.27:0,68,1543 0/0:35,18:53:41.48:0,41,763 0/0:41,8:49:56.52:0,57,946 0/0:36,10:46:45.11:0,45,525 0/0:41,6:47:55.65:0,56,949 0/0:21,8:29:48.12:0,48,572 0/0:14,3:17:2.85:0,0,330 0/0:23,6:30:42.13:0,42,533 0/0:23,5:28:51.13:0,51,604 0/0:24,4:28:6.49:0,6,385 0/0:26,6:32:19.39:0,19,444 0/0:29,23:52:10.87:0,11,621 0/0:19,7:26:45.12:0,45,534 0/0:19,6:25:39.06:0,39,435 0/0:17,6:23:2.95:0,3,378 0/0:23,11:35:0.41:10,0,481 0/0:38,13:51:35.78:0,36,783 0/1:23,11:35:93.90:94,0,572 0/0:28,8:36:63.15:0,63,724 0/0:73,20:93:99:0,107,1592 0/0:33,4:37:54.10:0,54,605 0/0:51,10:61:83.46:0,83,1032 0/0:36,6:42:28.56:0,29,630 0/0:13,3:16:18.03:0,18,205 0/0:22,6:28:9.43:0,9,385 0/0:14,6:20:36.11:0,36,434 0/0:21,5:26:42.09:0,42,489 0/1:19,7:26:22.82:23,0,391 0/0:44,5:49:35.86:0,36,898 0/0:26,5:31:17.80:0,18,572 0/0:19,3:22:19.01:0,19,439 0/0:16,6:23:33.07:0,33,386 0/0:20,5:25:45.10:0,45,544 0/0:16,8:25:36.07:0,36,420 0/0:10,3:13:0.86:7,0,206 0/1:17,4:21:10.30:10,0,211 0/0:25,12:37:45.12:0,45,528 0/0:20,8:28:9.49:0,9,413 0/0:22,4:26:45.14:0,45,547 17 26955330 . A C 1961.56 . AC=3;AF=0.036;AN=84;BaseQRankSum=-0.465;DP=3032;Dels=0.00;FS=4.835;HRun=1;HaplotypeScore=1.4100;InbreedingCoeff=-0.0370;MQ=59.44;MQ0=0;MQRankSum=-0.738;QD=10.90;ReadPosRankSum=-2.003 GT:AD:DP:GQ:PL 0/0:69,2:71:99:0,166,2391 0/0:53,0:53:99:0,156,1860 0/0:49,0:49:99:0,135,1665 0/0:114,0:114:99:0,304,3859 0/0:120,0:120:99:0,328,4177 0/0:71,0:71:99:0,202,2600 0/0:68,0:68:99:0,181,2344 0/0:52,0:52:99:0,144,1814 0/0:61,1:62:99:0,178,2121 0/0:53,0:53:99:0,150,1828 0/1:29,17:46:99:473,0,897 0/0:59,0:60:99:0,162,1961 0/0:52,0:52:99:0,153,1837 0/0:60,1:61:99:0,142,2109 0/0:237,0:237:99:0,611,7571 0/0:68,0:68:99:0,190,2317 0/0:69,0:69:99:0,187,2273 0/0:55,0:55:99:0,156,1898 0/0:100,0:100:99:0,277,3361 0/0:99,0:99:99:0,268,3323 0/1:45,41:86:99:1099,0,1297 0/1:32,16:48:99:465,0,842 0/0:131,1:132:99:0,352,4482 0/0:71,0:72:99:0,199,2523 0/0:73,0:73:99:0,202,2573 0/0:65,0:65:99:0,187,2314 0/0:44,0:44:99:0,117,1462 0/0:56,0:56:99:0,156,1843 0/0:48,1:50:99:0,138,1634 0/0:67,0:67:99:0,190,2305 0/0:54,0:54:99:0,153,1843 0/0:94,0:94:99:0,253,3097 0/0:46,0:46:99:0,129,1592 0/0:64,0:64:99:0,184,2231 0/0:51,0:51:99:0,147,1799 0/0:73,0:73:99:0,205,2493 0/0:89,1:90:99:0,247,3018 0/0:54,0:54:99:0,150,1807 0/0:73,0:73:99:0,214,2541 0/0:61,0:61:99:0,166,2060 0/0:58,0:58:99:0,162,1986 0/0:59,0:59:99:0,175,2118 17 26955355 . T C 3455.48 . AC=3;AF=0.036;AN=84;BaseQRankSum=9.020;DP=3212;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.2951;InbreedingCoeff=-0.0370;MQ=59.42;MQ0=0;MQRankSum=0.611;QD=12.89;ReadPosRankSum=-0.382 GT:AD:DP:GQ:PL 0/0:71,0:71:99:0,205,2443 0/0:61,0:61:99:0,175,2085 0/0:56,0:56:99:0,165,1950 0/0:132,0:132:99:0,373,4492 0/0:128,0:128:99:0,370,4539 0/0:90,0:90:99:0,265,3234 0/0:69,1:70:99:0,196,2433 0/0:73,0:73:99:0,211,2562 0/0:67,0:67:99:0,190,2246 0/0:61,0:61:99:0,165,2014 0/0:48,0:48:99:0,144,1703 0/0:66,0:66:99:0,181,2213 0/0:54,0:54:99:0,156,1853 0/0:59,0:59:99:0,178,2101 0/0:216,0:218:99:0,560,6804 0/0:82,0:82:99:0,229,2730 0/0:61,0:61:99:0,172,2069 0/0:46,0:46:99:0,138,1636 0/0:100,0:101:99:0,283,3410 0/1:62,54:116:99:1458,0,1712 0/0:92,0:93:99:0,247,3026 0/0:68,0:68:99:0,193,2274 0/0:141,0:141:99:0,388,4776 0/0:83,0:83:99:0,235,2889 0/0:89,0:89:99:0,256,3128 0/0:84,0:85:99:0,220,2695 0/0:63,0:63:99:0,174,2055 0/0:55,0:55:99:0,159,1884 0/0:52,0:52:99:0,150,1781 0/0:67,0:67:99:0,181,2197 0/0:47,0:47:99:0,135,1644 0/0:90,0:90:99:0,241,2948 0/0:59,0:59:99:0,156,1892 0/0:58,0:58:99:0,172,2022 0/0:48,0:48:99:0,138,1656 0/0:73,0:73:99:0,214,2563 0/1:57,30:87:99:862,0,1516 0/1:30,35:65:99:1136,0,801 0/0:60,0:60:99:0,175,2065 0/0:59,0:59:99:0,175,2090 0/0:54,0:54:99:0,150,1804 0/0:56,0:56:99:0,162,1940 17 27027480 . T C 554.60 . 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A C 9071.70 . AC=5;AF=0.060;AN=84;BaseQRankSum=18.361;DP=6139;DS;Dels=0.00;FS=2.951;HRun=4;HaplotypeScore=11.9227;InbreedingCoeff=-0.0633;MQ=59.02;MQ0=1;MQRankSum=0.568;QD=14.24;ReadPosRankSum=-0.989 GT:AD:DP:GQ:PL 0/0:118,0:118:99:0,319,3868 0/0:121,0:121:99:0,307,3770 0/0:109,0:110:99:0,301,3593 0/0:241,0:242:99:0,701,8331 0/0:237,0:237:99:0,686,8404 0/0:190,0:190:99:0,542,6785 0/0:169,2:171:99:0,475,5915 0/0:193,0:193:99:0,521,6399 0/0:110,2:112:99:0,313,3712 0/0:111,1:112:99:0,286,3455 0/0:112,0:112:99:0,310,3676 0/0:110,1:111:99:0,313,3759 0/0:100,1:101:99:0,227,2984 0/0:121,1:122:99:0,340,4073 0/0:247,3:250:99:0,665,7932 0/0:135,0:135:99:0,379,4548 0/0:104,1:105:99:0,295,3516 0/0:87,1:88:99:0,241,2894 0/0:216,1:217:99:0,555,7030 0/0:245,3:248:99:0,677,8192 0/0:224,6:230:99:0,592,7150 0/0:141,3:144:99:0,375,4445 0/0:250,0:250:99:0,731,8783 0/1:62,69:131:99:2203,0,1749 0/1:92,90:182:99:2928,0,2542 0/0:165,0:165:99:0,454,5594 0/0:87,0:87:99:0,247,2937 0/0:117,0:117:99:0,328,3929 0/0:97,0:97:99:0,256,3119 0/0:118,0:118:99:0,304,3702 0/0:96,0:96:99:0,268,3253 0/0:208,1:210:99:0,542,6615 0/0:127,0:127:99:0,364,4305 0/0:114,1:115:99:0,322,3880 0/0:113,0:113:99:0,322,3836 0/0:104,0:104:99:0,286,3430 0/0:213,3:216:99:0,560,6829 0/0:124,0:124:99:0,337,4024 0/1:74,57:131:99:1652,0,2060 0/1:51,42:93:99:1198,0,1475 0/1:60,39:100:99:1090,0,1648 0/0:94,0:94:99:0,256,3090 17 27052356 . CGCGTCTGT C 642.60 . AC=15;AF=0.179;AN=84;BaseQRankSum=0.677;DP=2099;FS=301.706;HRun=0;HaplotypeScore=327.0057;InbreedingCoeff=-0.2427;MQ=57.80;MQ0=0;MQRankSum=-1.897;QD=0.85;ReadPosRankSum=-9.888 GT:AD:DP:GQ:PL 0/0:41,0:41:31.61:0,32,1594 0/0:45,0:45:1.26:0,1,1804 0/1:43,0:43:13.93:14,0,2027 0/0:87,0:87:27.14:0,27,2997 0/0:55,0:55:3.96:0,4,1824 0/0:50,0:49:38.80:0,39,1820 0/0:50,0:48:55.29:0,55,1917 0/0:52,0:50:31.53:0,32,1645 0/0:41,0:41:25.27:0,25,2496 0/1:34,0:34:66.03:66,0,990 0/0:48,0:48:40.46:0,40,1862 0/1:33,0:33:14.08:14,0,792 0/0:41,0:41:58.40:0,58,1800 0/1:44,0:44:12.38:12,0,1685 0/1:142,0:142:99:112,0,4855 0/1:42,0:42:9.16:9,0,2197 0/0:36,0:36:22.68:0,23,1287 0/1:27,0:27:56.91:57,0,1414 0/1:58,0:58:99:170,0,1992 0/0:66,0:66:24.39:0,24,3505 0/1:35,15:50:63.54:64,0,1779 0/0:57,0:57:77.84:0,78,2535 0/0:82,0:82:4.85:0,5,1957 0/0:44,0:43:27.67:0,28,2009 0/1:51,0:51:18.63:19,0,2222 0/0:43,0:41:39.67:0,40,1951 0/1:33,0:33:31.15:31,0,1032 0/1:53,0:53:7.94:8,0,1947 0/0:44,0:44:2.20:2,0,1964 0/0:50,0:50:34.84:0,35,2317 0/1:41,0:41:41.30:41,0,973 0/0:77,0:77:60.75:0,61,3567 0/0:38,0:38:31.59:0,32,1175 0/0:50,0:50:38.47:0,38,2444 0/0:36,0:36:39.84:0,40,1729 0/0:47,0:47:33.47:0,33,2390 0/1:62,0:62:99:103,0,2763 0/0:53,0:53:23.93:0,24,2710 0/1:41,0:41:80.40:80,0,783 0/0:51,0:51:6.04:0,6,1971 0/0:25,0:25:22.85:0,23,750 0/0:36,0:36:24.24:0,24,1071 17 27052357 . G C 656.83 . AC=16;AF=0.190;AN=84;BaseQRankSum=-10.308;DP=2099;Dels=0.01;FS=171.437;HRun=1;HaplotypeScore=3.9998;InbreedingCoeff=-0.2569;MQ=57.80;MQ0=0;MQRankSum=-1.985;QD=0.84;ReadPosRankSum=-8.631 GT:AD:DP:GQ:PL 0/0:32,8:41:20.47:0,20,473 0/0:27,18:45:23.44:0,23,501 0/1:27,16:43:25.63:26,0,516 0/0:60,27:87:61.45:0,61,904 0/1:40,15:55:39.69:40,0,482 0/0:36,13:50:0.71:0,1,429 0/0:37,13:50:48.11:0,48,529 0/0:39,13:52:29.38:0,29,529 0/0:30,11:41:4.09:0,4,539 0/1:20,14:34:27.95:28,0,287 0/0:34,13:48:28.44:0,28,540 0/1:21,12:33:27.84:28,0,307 0/0:29,12:41:51.12:0,51,585 0/1:32,12:44:6.70:7,0,444 0/1:82,58:142:99:109,0,1417 0/1:30,12:42:4.28:4,0,593 0/1:28,8:36:15.03:15,0,387 0/1:15,12:27:50.65:51,0,277 0/1:32,24:58:99:224,0,551 0/0:53,13:66:5.66:0,6,801 0/0:32,3:35:57.12:0,57,622 0/0:48,9:57:78.14:0,78,830 0/0:52,29:82:29.41:0,29,556 0/0:38,6:44:23.41:0,23,504 0/0:29,22:51:7.38:0,7,469 0/0:35,8:43:28.39:0,28,488 0/1:20,13:33:36.02:36,0,287 0/0:41,12:53:2.93:0,0,463 0/1:25,18:44:8.25:8,0,377 0/0:37,13:50:25.77:0,26,683 0/1:26,15:41:17.18:17,0,275 0/0:63,13:77:40.16:0,40,956 0/0:28,10:38:13.38:0,13,344 0/0:39,11:50:31.78:0,32,649 0/0:24,12:36:42.08:0,42,449 0/0:34,13:47:42.48:0,42,725 0/1:37,25:62:95.29:95,0,680 0/0:39,13:53:41.42:0,41,637 0/1:19,21:41:99:107,0,207 0/1:34,16:51:11.14:11,0,411 0/0:20,5:25:6.36:0,6,272 0/0:23,12:36:36.06:0,36,404 17 27052358 . C T 656.64 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.978;DP=1540;Dels=0.01;FS=19.377;HRun=0;HaplotypeScore=4.1642;InbreedingCoeff=-0.0370;MQ=57.66;MQ0=0;MQRankSum=0.302;QD=5.66;ReadPosRankSum=2.866 GT:AD:DP:GQ:PL 0/0:26,0:26:60.16:0,60,675 0/0:36,0:37:78.22:0,78,898 0/0:31,0:31:78.22:0,78,895 0/0:62,0:62:99:0,144,1763 0/0:43,0:43:96.27:0,96,1178 0/0:39,0:39:84.25:0,84,1004 0/0:35,0:35:81.23:0,81,976 0/0:37,0:37:75.21:0,75,905 0/0:32,0:32:78.17:0,78,856 0/0:27,0:27:60.16:0,60,685 0/1:22,9:31:99:174,0,426 0/0:19,0:20:42.12:0,42,492 0/0:29,0:29:66.18:0,66,740 0/0:35,0:35:81.20:0,81,914 0/0:101,0:101:99:0,244,2877 0/0:33,0:33:78.20:0,78,880 0/0:28,0:28:63.18:0,63,733 0/0:18,0:18:51.15:0,51,594 0/0:44,0:45:99:0,105,1228 0/0:51,0:51:99:0,114,1320 0/1:18,11:29:99:109,0,496 0/1:23,18:41:99:449,0,425 0/0:49,0:49:99:0,114,1383 0/0:35,0:35:75.21:0,75,903 0/0:31,0:32:75.18:0,75,889 0/0:35,0:35:66.18:0,66,786 0/0:25,0:25:54.16:0,54,632 0/0:41,0:43:75.20:0,75,853 0/0:30,0:30:69.19:0,69,795 0/0:36,0:37:90.25:0,90,1049 0/0:31,0:32:66.20:0,66,786 0/0:56,0:56:99:0,126,1459 0/0:25,0:25:57.17:0,57,673 0/0:35,0:35:93.23:0,93,1054 0/0:29,0:30:72.21:0,72,840 0/0:37,0:37:87.24:0,87,977 0/0:51,0:52:99:0,114,1315 0/0:39,0:39:99:0,105,1248 0/0:28,0:28:57.16:0,57,672 0/0:32,0:34:66.18:0,66,768 0/0:19,0:19:36.10:0,36,410 0/0:22,0:22:48.13:0,48,550 17 27052363 . G T 3.32 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.630;DP=1178;Dels=0.01;FS=16.812;HRun=1;HaplotypeScore=4.6511;InbreedingCoeff=-0.0135;MQ=57.11;MQ0=0;MQRankSum=2.991;QD=0.10;ReadPosRankSum=-2.629 GT:AD:DP:GQ:PL 0/0:19,0:19:45.13:0,45,542 0/0:29,5:34:48.11:0,48,562 0/0:20,0:20:45.13:0,45,541 0/0:39,0:39:87.28:0,87,1110 0/0:31,1:32:48.10:0,48,577 0/0:35,0:35:69.19:0,69,866 0/0:31,0:31:57.16:0,57,722 0/0:28,0:28:48.14:0,48,594 0/0:27,0:27:60.17:0,60,716 0/0:15,0:15:33.10:0,33,408 0/1:28,4:32:46.79:47,0,510 0/0:14,0:14:24.08:0,24,300 0/0:20,0:20:39.12:0,39,480 0/0:21,0:22:39.07:0,39,435 0/0:68,0:68:99:0,126,1544 0/0:24,1:25:57.17:0,57,689 0/0:19,0:20:33.10:0,33,398 0/0:13,0:13:36.11:0,36,445 0/0:27,0:27:57.18:0,57,710 0/0:42,1:43:90.26:0,90,1064 0/0:31,0:31:69.22:0,69,872 0/0:35,0:35:78.21:0,78,922 0/0:29,1:30:57.16:0,57,741 0/0:32,0:32:54.16:0,54,672 0/0:32,0:32:66.18:0,66,824 0/0:29,2:31:60.14:0,60,710 0/0:17,0:18:39.12:0,39,473 0/0:33,2:35:51.15:0,51,612 0/0:23,0:23:42.12:0,42,504 0/0:27,0:27:54.17:0,54,660 0/0:19,0:19:30.09:0,30,363 0/0:44,0:44:84.23:0,84,1017 0/0:20,0:20:39.10:0,39,458 0/0:25,0:25:66.20:0,66,813 0/0:25,0:25:48.13:0,48,573 0/0:33,0:33:75.19:0,75,885 0/0:44,1:45:78.23:0,78,936 0/0:28,0:28:66.19:0,66,793 0/0:21,0:21:39.11:0,39,473 0/0:23,0:23:42.13:0,42,516 0/0:7,0:7:9.03:0,9,111 0/0:14,0:15:27.08:0,27,326 17 27052367 . G T 47.78 . AC=7;AF=0.083;AN=84;BaseQRankSum=3.583;DP=1410;Dels=0.01;FS=224.860;HRun=0;HaplotypeScore=2.6854;InbreedingCoeff=-0.1267;MQ=57.51;MQ0=0;MQRankSum=0.747;QD=0.22;ReadPosRankSum=-8.324 GT:AD:DP:GQ:PL 0/0:18,4:22:9.85:0,10,417 0/0:27,11:40:0.89:6,0,561 0/0:21,6:27:45.10:0,45,503 0/0:35,11:47:11.98:0,12,832 0/0:29,11:40:8.81:0,9,468 0/0:35,9:44:72.20:0,72,838 0/0:27,8:35:54.15:0,54,621 0/0:26,9:37:11.16:0,11,485 0/1:24,6:30:10.33:10,0,528 0/0:13,4:18:2.84:0,0,289 0/0:27,0:28:54.11:0,54,570 0/0:15,8:25:1.49:4,0,296 0/1:22,6:29:47.72:48,0,460 0/0:23,5:28:42.08:0,42,443 0/0:60,16:80:56.21:0,56,1271 0/0:25,5:31:54.13:0,54,589 0/0:19,8:27:14.69:0,15,452 0/0:15,4:19:39.09:0,39,412 0/0:28,2:30:69.18:0,69,761 0/0:44,5:51:78.16:0,78,806 0/0:36,3:41:50.76:0,51,844 0/0:33,2:35:75.17:0,75,800 0/0:33,11:44:30.04:0,30,675 0/0:24,10:35:42.12:0,42,500 0/0:32,5:37:63.15:0,63,704 0/0:28,2:32:57.15:0,57,666 0/0:19,6:25:48.10:0,48,508 0/1:34,9:43:20.38:20,0,618 0/0:20,6:27:42.06:0,42,423 0/0:24,5:30:26.71:0,27,593 0/0:17,5:23:27.06:0,27,277 0/0:36,10:46:50.23:0,50,851 0/0:21,4:25:39.08:0,39,399 0/0:27,5:33:30.85:0,31,635 0/1:21,7:29:15.02:15,0,476 0/0:28,6:34:6.46:0,6,676 0/0:40,4:45:16:0,16,811 0/1:26,6:33:25.33:25,0,551 0/1:16,7:25:23.43:23,0,359 0/0:23,7:30:13.32:0,13,487 0/0:8,8:16:12.03:0,12,140 0/1:16,8:24:7.28:7,0,239 17 27052368 . C T 5568.67 . AC=39;AF=0.464;AN=84;BaseQRankSum=-12.048;DP=1803;Dels=0.01;FS=1379.177;HRun=1;HaplotypeScore=2.2654;InbreedingCoeff=-0.8379;MQ=57.86;MQ0=0;MQRankSum=-0.664;QD=3.31;ReadPosRankSum=-18.202 GT:AD:DP:GQ:PL 0/1:17,10:27:50.03:50,0,466 0/1:24,25:49:99:231,0,603 0/1:18,9:27:99:151,0,431 0/1:33,36:69:99:341,0,949 0/1:24,38:62:99:307,0,593 0/1:31,28:59:99:153,0,851 0/1:23,32:55:99:132,0,645 0/1:25,31:56:99:182,0,574 0/1:25,12:37:82.35:82,0,659 0/1:14,7:21:32.28:32,0,366 0/0:25,2:27:54.16:0,54,647 0/1:16,18:34:99:155,0,360 0/1:20,17:37:99:99,0,571 0/1:19,18:37:82.18:82,0,467 0/1:59,42:101:99:497,0,1455 0/1:22,16:38:99:106,0,585 0/1:16,18:35:99:151,0,444 0/1:16,10:26:78.69:79,0,500 0/1:29,6:36:2.43:0,1,768 0/1:39,25:64:74.41:74,0,848 0/0:32,13:47:28.14:0,28,961 0/0:32,6:38:41.25:0,41,872 0/1:34,40:74:99:287,0,864 0/1:21,23:44:99:160,0,452 0/1:29,25:54:64.27:64,0,816 0/1:27,18:45:8.13:8,0,668 0/1:17,9:26:99:105,0,536 0/1:28,17:45:99:219,0,737 0/1:17,17:35:99:211,0,440 0/1:23,9:32:99:108,0,631 0/1:13,17:30:99:178,0,253 0/1:31,23:54:62.34:62,0,965 0/1:16,14:30:99:196,0,416 0/1:23,16:39:88.64:89,0,708 0/1:22,11:33:99:108,0,605 0/1:27,15:42:75.12:75,0,777 0/1:38,8:47:49.69:50,0,911 0/1:28,16:44:84.71:85,0,734 0/1:17,17:34:99:105,0,416 0/1:23,20:43:99:149,0,579 0/1:7,17:24:99:248,0,145 0/1:14,21:36:99:159,0,289 17 27065211 . T C 882.22 . AC=3;AF=0.036;AN=84;BaseQRankSum=-2.187;DP=1918;Dels=0.00;FS=3.065;HRun=0;HaplotypeScore=1.3037;InbreedingCoeff=-0.0370;MQ=59.12;MQ0=0;MQRankSum=0.015;QD=8.57;ReadPosRankSum=0.161 GT:AD:DP:GQ:PL 0/0:40,0:41:99:0,102,1213 0/0:31,1:33:81.21:0,81,953 0/0:30,0:31:78.18:0,78,884 0/0:99,0:102:99:0,259,3024 0/0:90,0:91:99:0,250,2921 0/0:69,1:71:99:0,183,2158 0/0:47,0:47:99:0,114,1368 0/0:53,0:53:99:0,150,1705 0/0:27,0:28:72.19:0,72,813 0/0:27,0:28:69.17:0,69,798 0/1:16,13:29:99:283,0,419 0/0:35,0:35:93.26:0,93,1100 0/0:31,0:31:90.25:0,90,1055 0/0:33,0:35:96.27:0,96,1129 0/0:113,0:116:99:0,304,3489 0/0:34,0:35:90.27:0,90,1075 0/0:38,1:39:99:0,105,1214 0/0:38,0:40:99:0,105,1260 0/0:56,1:58:99:0,147,1745 0/0:62,2:66:99:0,159,1876 0/1:31,16:49:99:382,0,795 0/1:11,13:25:99:294,0,313 0/0:95,1:97:99:0,262,3097 0/0:50,0:50:99:0,129,1543 0/0:44,0:45:99:0,120,1422 0/0:34,0:34:93.23:0,93,1080 0/0:27,0:27:72.22:0,72,867 0/0:30,0:30:78.22:0,78,911 0/0:29,1:31:84.24:0,84,978 0/0:31,2:33:45.63:0,46,962 0/0:34,0:34:96.25:0,96,1100 0/0:79,0:80:99:0,199,2384 0/0:38,0:40:96.25:0,96,1127 0/0:40,0:40:99:0,108,1286 0/0:30,0:30:87.25:0,87,1013 0/0:36,0:36:99:0,102,1207 0/0:48,2:50:99:0,123,1450 0/0:35,0:36:99:0,102,1172 0/0:33,0:33:93.25:0,93,1088 0/0:29,1:30:72.22:0,72,881 0/0:40,2:43:99:0,102,1212 0/0:36,0:36:96.28:0,96,1147 17 27075423 . C T 5112 . AC=10;AF=0.119;AN=84;BaseQRankSum=1.801;DP=1590;Dels=0.00;FS=1.974;HRun=2;HaplotypeScore=1.0539;InbreedingCoeff=-0.1351;MQ=58.13;MQ0=1;MQRankSum=5.501;QD=12.41;ReadPosRankSum=0.284 GT:AD:DP:GQ:PL 0/0:29,0:29:84.21:0,84,986 0/0:30,0:30:81.22:0,81,967 0/0:40,0:40:99:0,114,1318 0/0:47,0:47:99:0,126,1556 0/0:48,0:48:99:0,129,1623 0/0:23,0:23:57.16:0,57,726 0/0:20,0:20:54.17:0,54,688 0/1:14,14:28:99:436,0,382 0/1:21,11:33:99:312,0,565 0/1:20,11:31:99:302,0,581 0/1:12,19:31:99:561,0,287 0/0:37,0:37:99:0,102,1206 0/1:8,7:15:99:212,0,206 0/0:39,0:39:99:0,114,1350 0/1:66,46:112:99:1212,0,1549 0/0:51,0:51:99:0,132,1543 0/1:19,22:41:99:634,0,503 0/0:31,0:31:87.23:0,87,1042 0/0:57,0:57:99:0,156,1799 0/0:61,0:61:99:0,159,1889 0/1:26,20:46:99:466,0,721 0/1:25,23:48:99:582,0,692 0/0:39,0:39:99:0,105,1325 0/0:12,0:12:33.09:0,33,402 0/1:14,13:27:99:396,0,410 0/0:25,1:26:33.65:0,34,846 0/0:35,0:35:96.27:0,96,1133 0/0:44,0:44:99:0,117,1362 0/0:25,0:25:69.20:0,69,815 0/0:28,0:28:78.23:0,78,938 0/0:33,0:33:93.26:0,93,1080 0/0:50,0:50:99:0,129,1585 0/0:44,0:44:99:0,111,1329 0/0:26,0:27:78.21:0,78,902 0/0:41,0:41:99:0,111,1332 0/0:25,0:25:69.16:0,69,803 0/0:48,0:49:99:0,132,1542 0/0:39,0:39:99:0,105,1235 0/0:27,0:28:78.16:0,78,869 0/0:39,0:39:99:0,102,1224 0/0:35,0:35:99:0,99,1151 0/0:44,1:45:83.99:0,84,1338 17 27185827 . C T 240807.88 . AC=76;AF=0.905;AN=84;BaseQRankSum=15.541;DP=8123;DS;Dels=0.00;FS=2.384;HRun=0;HaplotypeScore=3.7868;InbreedingCoeff=-0.1053;MQ=59.32;MQ0=0;MQRankSum=1.420;QD=29.65;ReadPosRankSum=-1.005 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5235,427,0 1/1:0,165:165:99:5420,442,0 1/1:0,156:156:99:5280,433,0 1/1:0,243:243:99:8241,668,0 1/1:1,244:245:99:8405,649,0 1/1:0,232:232:99:7925,620,0 1/1:0,209:209:99:6945,560,0 0/1:135,99:234:99:2736,0,3884 0/1:86,100:187:99:2801,0,2135 0/1:102,81:183:99:2095,0,2678 0/1:79,80:159:99:2343,0,2107 1/1:0,138:138:99:4589,379,0 0/1:73,59:133:99:1674,0,1845 1/1:0,168:168:99:5668,463,0 0/1:122,128:250:99:3719,0,3187 1/1:0,151:151:99:4975,412,0 0/1:108,92:200:99:2649,0,2751 1/1:0,157:157:99:5400,445,0 1/1:0,249:249:99:8382,686,0 1/1:0,242:243:99:8166,677,0 1/1:1,249:250:99:8605,707,0 1/1:0,239:239:99:7712,635,0 1/1:1,248:250:99:8556,664,0 1/1:0,229:230:99:7499,596,0 0/1:123,124:247:99:3453,0,3463 1/1:0,201:202:99:6487,515,0 1/1:0,123:123:99:4219,346,0 1/1:0,180:180:99:6166,509,0 1/1:0,174:174:99:5656,457,0 1/1:0,180:180:99:6033,491,0 1/1:0,152:152:99:5159,424,0 1/1:0,249:249:99:8210,668,0 1/1:0,217:217:99:7352,611,0 1/1:0,161:162:99:5567,454,0 1/1:1,170:171:99:5679,463,0 1/1:0,193:193:99:6476,530,0 1/1:0,243:243:99:7968,662,0 1/1:0,160:160:99:5321,442,0 1/1:0,159:159:99:5488,451,0 1/1:0,171:171:99:5902,487,0 1/1:0,147:147:99:5092,424,0 1/1:0,160:160:99:5560,463,0 17 27284174 . T G 29.65 . AC=2;AF=0.024;AN=84;BaseQRankSum=-16.822;DP=1500;Dels=0.00;FS=39.047;HRun=2;HaplotypeScore=1.1010;InbreedingCoeff=-0.0387;MQ=58.60;MQ0=0;MQRankSum=0.071;QD=0.42;ReadPosRankSum=-4.754 GT:AD:DP:GQ:PL 0/0:20,5:26:35.46:0,35,587 0/0:27,7:34:51.44:0,51,726 0/0:23,5:28:69.13:0,69,740 0/0:55,24:80:99:0,116,1507 0/0:29,16:46:59.42:0,59,776 0/0:35,10:45:32.14:0,32,892 0/0:24,6:30:63.08:0,63,670 0/0:34,6:41:81.13:0,81,867 0/0:19,3:23:48.03:0,48,504 0/0:19,11:30:0.22:13,0,447 0/0:26,7:33:75.14:0,75,806 0/0:18,7:25:45.11:0,45,499 0/0:18,1:20:51.10:0,51,541 0/0:28,7:35:66.18:0,66,759 0/0:63,24:87:99:0,124,1760 0/0:20,7:27:31.47:0,31,591 0/0:20,5:25:32.44:0,32,541 0/1:13,8:21:61.46:61,0,322 0/1:26,24:50:27.37:27,0,659 0/0:54,7:61:99:0,135,1542 0/0:38,15:54:24.38:0,24,1064 0/0:31,6:37:75.16:0,75,812 0/0:61,12:73:99:0,159,1718 0/0:22,7:29:32.39:0,32,533 0/0:31,11:43:86.52:0,87,883 0/0:21,12:33:57.11:0,57,608 0/0:16,6:22:35.11:0,35,413 0/0:25,6:32:66.17:0,66,741 0/0:16,5:22:45.12:0,45,511 0/0:21,5:26:53.62:0,54,588 0/0:24,9:33:63.11:0,63,673 0/0:39,11:50:29.12:0,29,898 0/0:29,5:34:50.78:0,51,867 0/0:22,4:26:54.13:0,54,603 0/0:12,9:21:11.37:0,11,319 0/0:19,5:24:9.86:0,10,423 0/0:32,12:44:54.50:0,55,822 0/0:17,6:23:20.49:0,20,471 0/0:22,9:31:25.39:0,25,496 0/0:18,4:22:34.40:0,34,552 0/0:13,7:20:36.08:0,36,392 0/0:27,7:34:81.20:0,81,893 17 27284194 . T C 1267.28 . 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C T 2260.19 . 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C T 198.01 . 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G A 164.92 . 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A G 6072.68 . AC=2;AF=0.024;AN=84;BaseQRankSum=7.378;DP=7744;DS;Dels=0.00;FS=6.088;HRun=0;HaplotypeScore=2.8099;InbreedingCoeff=-0.0244;MQ=59.42;MQ0=0;MQRankSum=2.786;QD=13.49;ReadPosRankSum=-1.137 GT:AD:DP:GQ:PL 0/0:166,0:166:99:0,454,5492 0/0:157,0:157:99:0,427,5153 0/0:163,1:164:99:0,420,5455 0/0:200,0:200:99:0,539,6654 0/0:212,0:212:99:0,608,7555 0/0:198,0:198:99:0,557,7039 0/0:205,0:205:99:0,554,6975 0/0:199,0:199:99:0,551,6873 0/0:170,0:170:99:0,475,5754 0/0:169,0:169:99:0,457,5530 0/0:153,0:153:99:0,430,5181 0/0:160,0:161:99:0,469,5588 0/0:157,0:158:99:0,445,5374 0/0:150,0:150:99:0,412,5022 0/1:127,123:250:99:3638,0,3504 0/0:124,0:124:99:0,352,4219 0/1:113,87:200:99:2434,0,3302 0/0:146,0:146:99:0,406,4938 0/0:232,0:232:99:0,650,7867 0/0:227,0:228:99:0,641,7759 0/0:224,0:226:99:0,614,7419 0/0:217,0:217:99:0,593,7173 0/0:230,0:230:99:0,635,7818 0/0:190,0:190:99:0,518,6464 0/0:194,0:194:99:0,545,6752 0/0:212,0:212:99:0,548,6860 0/0:138,0:138:99:0,376,4548 0/0:181,0:181:99:0,512,6180 0/0:136,0:136:99:0,370,4532 0/0:167,0:167:99:0,472,5716 0/0:159,0:159:99:0,448,5410 0/0:214,0:214:99:0,602,7301 0/0:199,0:199:99:0,560,6659 0/0:177,0:177:99:0,506,6115 0/0:173,0:173:99:0,472,5791 0/0:198,0:198:99:0,563,6811 0/0:229,0:231:99:0,647,7778 0/0:166,0:167:99:0,460,5542 0/0:165,0:165:99:0,466,5647 0/0:176,0:176:99:0,506,6080 0/0:164,0:164:99:0,469,5668 0/0:187,0:187:99:0,533,6451 17 27904711 . G A 47140.71 . AC=34;AF=0.405;AN=84;BaseQRankSum=11.502;DP=3309;DS;Dels=0.00;FS=11.182;HRun=0;HaplotypeScore=2.6693;InbreedingCoeff=-0.0871;MQ=58.98;MQ0=0;MQRankSum=1.068;QD=19.78;ReadPosRankSum=3.864 GT:AD:DP:GQ:PL 0/0:69,0:69:99:0,192,2214 0/1:24,30:54:99:847,0,604 0/1:33,30:63:99:836,0,942 1/1:0,147:147:99:5001,403,0 1/1:0,143:143:99:4985,394,0 0/1:52,39:91:99:1251,0,1486 0/0:80,1:81:99:0,194,2708 0/1:53,56:109:99:1493,0,1471 0/1:31,21:52:99:577,0,869 0/1:34,26:60:99:724,0,903 0/1:33,29:62:99:840,0,950 0/1:31,29:60:99:812,0,821 0/1:30,24:54:99:688,0,723 0/0:48,0:48:99:0,132,1538 1/1:1,162:164:99:5495,457,0 0/1:26,33:60:99:930,0,670 0/1:37,27:64:99:710,0,1033 0/0:51,0:51:99:0,147,1667 0/1:67,57:124:99:1534,0,1801 0/1:80,52:133:99:1357,0,2140 0/0:118,0:119:99:0,328,3842 0/1:38,35:74:99:1044,0,965 1/1:0,157:158:99:5341,424,0 0/1:32,41:73:99:1204,0,937 0/1:59,41:100:99:1117,0,1630 0/1:26,36:62:99:1094,0,766 0/0:43,0:43:99:0,117,1398 0/0:48,0:48:99:0,132,1476 0/0:56,0:56:99:0,156,1800 0/1:38,29:68:99:688,0,1062 0/0:50,0:50:99:0,138,1600 0/0:133,0:133:99:0,349,4103 1/1:1,66:67:99:2258,187,0 0/0:63,0:64:99:0,180,2091 0/0:58,1:59:99:0,119,1764 0/0:54,1:55:99:0,125,1728 0/1:44,54:98:99:1510,0,1051 0/1:41,36:77:99:915,0,1061 1/1:0,57:57:99:2017,166,0 0/1:22,35:57:99:1020,0,599 0/0:50,0:50:99:0,144,1717 0/1:23,28:51:99:851,0,586 17 27942828 . G C 22.97 . AC=5;AF=0.063;AN=80;BaseQRankSum=-4.217;DP=220;Dels=0.00;FS=16.633;HRun=1;HaplotypeScore=0.2039;InbreedingCoeff=0.0835;MQ=58.41;MQ0=0;MQRankSum=0.490;QD=1.64;ReadPosRankSum=-2.262 GT:AD:DP:GQ:PL 0/0:2,2:4:6.01:0,6,65 0/0:5,1:6:12.03:0,12,135 0/0:1,0:1:3.01:0,3,32 0/0:4,2:6:9:0,9,95 0/0:6,5:11:9.02:0,9,101 0/0:3,3:6:2.98:0,3,22 0/0:7,3:10:6.02:0,6,72 0/0:7,3:10:18.02:0,18,197 0/0:4,2:6:9.02:0,9,99 0/0:4,2:7:9.02:0,9,103 0/0:2,0:2:3.01:0,3,32 0/0:1,2:3:3.01:0,3,39 0/0:5,0:5:12.03:0,12,141 0/0:2,1:3:6.01:0,6,65 0/0:12,5:17:21.05:0,21,242 0/0:3,2:6:6.02:0,6,70 0/0:4,1:5:9.01:0,9,93 0/0:4,2:6:11.98:0,12,114 0/1:2,1:3:22.53:23,0,58 0/0:7,1:8:6.02:0,6,76 0/0:4,1:5:5.81:0,6,45 0/0:3,1:4:3.01:0,3,36 0/0:6,2:8:12.03:0,12,145 0/0:4,0:4:3.01:0,3,32 0/0:4,2:6:5.99:0,6,55 0/1:2,2:4:26.48:26,0,26 0/0:1,1:2:3.01:0,3,35 0/0:7,1:8:15.02:0,15,169 0/0:4,3:7:6:0,6,56 ./. 0/0:1,0:1:3:0,3,29 0/0:2,2:4:6.02:0,6,74 0/0:8,1:9:12.02:0,12,130 1/1:1,1:2:3.01:33,3,0 ./. 0/0:3,2:5:6.01:0,6,66 0/1:2,3:5:1.76:27,3,0 0/0:5,0:6:9.01:0,9,91 0/0:3,1:4:2.98:0,3,22 0/0:1,1:2:3.01:0,3,38 0/0:2,0:2:6.02:0,6,68 0/0:3,0:3:6.02:0,6,73 17 27949768 . C A 177.45 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.291;DP=221;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2678;InbreedingCoeff=-0.0700;MQ=58.67;MQ0=0;MQRankSum=0.684;QD=11.83;ReadPosRankSum=1.976 GT:AD:DP:GQ:PL 0/0:3,0:3:6.02:0,6,81 0/0:3,0:3:9.02:0,9,101 0/0:1,0:1:3.01:0,3,32 0/0:12,0:12:30.09:0,30,375 0/0:10,0:10:21.07:0,21,273 0/1:5,6:12:99:170,0,152 0/1:1,2:3:20.60:69,0,21 0/0:4,0:4:12.03:0,12,143 0/0:1,0:1:3.01:0,3,32 0/0:5,0:5:12.03:0,12,138 0/0:1,0:1:3.01:0,3,37 0/0:4,0:4:12.03:0,12,133 0/0:1,0:1:3.01:0,3,30 0/0:3,0:3:9.02:0,9,98 0/0:16,0:16:39.10:0,39,443 0/0:8,0:8:18.05:0,18,218 0/0:5,0:5:15.04:0,15,177 0/0:4,0:4:12.03:0,12,134 0/0:10,0:10:21.06:0,21,257 0/0:11,0:11:27.07:0,27,323 0/0:6,0:6:18.05:0,18,213 0/0:2,0:2:6.01:0,6,61 0/0:1,0:1:3.01:0,3,37 0/0:6,0:6:15.05:0,15,183 0/0:6,0:6:18.05:0,18,205 0/0:4,0:4:12.03:0,12,143 0/0:4,0:5:9.03:0,9,119 0/0:4,0:4:12.03:0,12,128 0/0:5,0:5:15.04:0,15,181 0/0:5,0:5:15.04:0,15,163 0/0:2,0:2:6.02:0,6,64 0/0:7,0:7:15.05:0,15,195 0/0:9,0:9:24.06:0,24,256 0/0:4,0:4:9.03:0,9,106 0/0:5,0:5:12.04:0,12,147 0/0:5,0:5:15.04:0,15,166 0/0:6,0:6:18.05:0,18,206 0/0:6,0:6:18.04:0,18,192 0/0:2,0:2:6.01:0,6,61 0/0:5,0:5:15.04:0,15,170 0/0:6,0:6:18.05:0,18,204 0/0:3,0:3:9.02:0,9,97 17 28417576 . G C 3622.53 . 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T C 11825.88 . 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T G 26.03 . AC=1;AF=0.012;AN=84;BaseQRankSum=-44.809;DP=6849;DS;Dels=0.00;FS=596.912;HRun=1;HaplotypeScore=2.9196;InbreedingCoeff=-0.0120;MQ=59.48;MQ0=0;MQRankSum=1.935;QD=0.15;ReadPosRankSum=-9.095 GT:AD:DP:GQ:PL 0/0:84,35:119:99:0,146,2645 0/0:95,34:129:99:0,151,2910 0/0:104,30:135:99:0,262,3091 0/0:170,77:248:99:0,310,5199 0/0:168,81:249:99:0,392,5195 0/0:179,63:242:99:0,398,5229 0/0:170,72:244:99:0,356,5021 0/0:169,70:239:99:0,436,5155 0/0:87,31:118:99:0,161,2685 0/0:93,30:123:99:0,198,2817 0/0:93,45:138:99:0,185,2814 0/0:85,33:118:99:0,169,2693 0/0:96,38:134:99:0,197,2921 0/0:96,36:133:99:0,128,2853 0/0:188,56:245:99:0,280,5904 0/0:55,22:77:99:0,112,1646 0/0:107,28:136:99:0,267,3253 0/0:118,46:165:99:0,274,3686 0/1:118,52:171:72.23:72,0,3395 0/0:170,33:203:99:0,387,4868 0/0:139,50:190:99:0,193,4096 0/0:67,20:87:99:0,189,2208 0/0:154,87:243:99:0,348,4766 0/0:174,68:244:99:0,338,5091 0/0:181,69:250:99:0,373,5281 0/0:169,64:234:99:0,413,5205 0/0:73,25:99:99:0,130,2127 0/0:115,38:153:99:0,292,3445 0/0:92,38:130:99:0,222,2780 0/0:98,40:138:99:0,211,2880 0/0:95,25:121:99:0,158,2694 0/0:176,32:208:99:0,442,5219 0/0:108,21:129:99:0,291,3334 0/0:98,34:133:99:0,184,3056 0/0:88,33:121:99:0,177,2786 0/0:100,40:140:99:0,103,2778 0/0:132,45:177:99:0,108,3914 0/0:120,37:157:99:0,292,3619 0/0:102,20:122:99:0,217,2981 0/0:109,36:145:99:0,220,3043 0/0:83,33:116:99:0,125,2562 0/0:104,40:145:99:0,195,3264 17 29496957 . T A 729.20 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.693;DP=2493;Dels=0.00;FS=2.338;HRun=1;HaplotypeScore=0.5396;InbreedingCoeff=-0.0120;MQ=59.42;MQ0=0;MQRankSum=-0.462;QD=11.95;ReadPosRankSum=-2.822 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,138,1718 0/0:56,0:56:99:0,138,1709 0/0:48,0:48:99:0,123,1516 0/0:109,0:109:99:0,262,3283 0/0:102,0:102:99:0,259,3225 0/0:120,0:120:99:0,286,3739 0/0:77,0:77:99:0,196,2459 0/0:96,0:96:99:0,238,2991 0/0:43,0:43:99:0,102,1250 0/1:31,30:61:99:775,0,818 0/0:49,0:49:99:0,126,1532 0/0:54,0:54:99:0,135,1674 0/0:45,0:46:99:0,117,1416 0/0:36,0:36:96.27:0,96,1152 0/0:179,0:179:99:0,418,5274 0/0:24,0:24:69.21:0,69,824 0/0:36,0:36:99:0,99,1197 0/0:33,0:33:87.27:0,87,1072 0/0:49,0:49:99:0,114,1456 0/0:50,0:50:99:0,129,1608 0/0:47,0:47:99:0,117,1443 0/0:32,0:32:81.25:0,81,997 0/0:114,0:114:99:0,292,3635 0/0:97,0:97:99:0,247,3119 0/0:89,0:89:99:0,226,2843 0/0:93,0:93:99:0,238,2961 0/0:23,0:23:63.19:0,63,768 0/0:39,0:39:99:0,99,1211 0/0:32,0:32:84.25:0,84,1020 0/0:60,0:61:99:0,138,1749 0/0:38,0:38:99:0,105,1271 0/0:54,0:54:99:0,132,1665 0/0:24,0:24:66.20:0,66,788 0/0:54,0:54:99:0,138,1714 0/0:42,0:42:99:0,108,1331 0/0:59,0:60:99:0,153,1874 0/0:39,0:39:93.28:0,93,1157 0/0:47,0:47:99:0,120,1463 0/0:42,0:42:99:0,108,1321 0/0:62,0:62:99:0,153,1924 0/0:45,0:45:99:0,111,1378 0/0:34,0:34:99:0,102,1205 17 29585433 . T C 1818.82 . AC=18;AF=0.214;AN=84;BaseQRankSum=-24.222;DP=4190;DS;Dels=0.00;FS=1396.152;HRun=2;HaplotypeScore=2.2471;InbreedingCoeff=-0.2831;MQ=57.79;MQ0=0;MQRankSum=9.393;QD=0.93;ReadPosRankSum=-16.169 GT:AD:DP:GQ:PL 0/1:37,36:74:27.68:28,0,968 0/0:35,23:58:49.07:0,49,900 0/1:36,25:61:47.46:47,0,937 0/1:81,143:224:99:354,0,1956 0/1:76,121:197:99:227,0,1858 0/0:106,90:196:71.55:0,72,2511 0/0:67,90:157:49.24:0,49,1671 0/0:68,72:140:92.06:0,92,1865 0/1:46,39:85:29.58:30,0,1266 0/0:39,37:76:43.83:0,44,1175 0/1:32,34:66:33.80:34,0,790 0/0:39,37:77:45.54:0,46,1110 0/1:32,26:58:30.76:31,0,863 0/0:32,33:65:9.12:0,9,858 0/1:123,110:233:99:149,0,3351 0/1:31,31:62:40.38:40,0,809 0/0:52,29:81:75.59:0,76,1486 0/0:45,31:77:35.68:0,36,1263 0/1:48,49:97:99:170,0,1444 0/0:70,36:106:72:0,72,1759 0/0:53,32:85:33.93:0,34,1512 0/0:44,28:72:16.27:0,16,1202 0/1:92,136:228:99:289,0,2433 0/0:80,79:159:79.27:0,79,2056 0/1:82,88:170:72.92:73,0,1931 0/0:72,73:146:42.68:0,43,1853 0/1:30,29:59:6.52:7,0,763 0/0:50,31:82:4.26:0,4,1401 0/1:27,31:58:99:137,0,707 0/0:41,27:68:77.77:0,78,1074 0/0:44,28:72:42.40:0,42,1256 0/0:48,35:83:30.93:0,31,1272 0/0:36,24:60:57.99:0,58,1006 0/1:36,41:78:99:143,0,967 0/1:39,32:71:6.78:7,0,1084 0/0:48,31:79:66.23:0,66,1308 0/0:61,27:88:59.03:0,59,1816 0/1:36,33:69:99:166,0,964 0/1:43,30:74:51.44:51,0,1247 0/0:46,27:73:39.97:0,40,1406 0/0:27,36:63:0.26:0,0,616 0/0:36,26:63:61.72:0,62,1017 17 29679401 . A G 1778.33 . AC=2;AF=0.024;AN=84;BaseQRankSum=10.313;DP=1896;Dels=0.00;FS=0.935;HRun=0;HaplotypeScore=0.9116;InbreedingCoeff=-0.0244;MQ=59.40;MQ0=0;MQRankSum=-0.423;QD=14.94;ReadPosRankSum=0.674 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,120,1389 0/0:41,0:41:99:0,111,1311 0/0:25,0:25:66.18:0,66,787 0/0:82,0:82:99:0,223,2661 0/0:80,0:81:99:0,214,2591 0/0:73,0:73:99:0,211,2536 0/0:66,0:66:99:0,193,2308 0/0:82,0:82:99:0,229,2734 0/0:38,0:38:99:0,114,1274 0/0:40,0:41:99:0,108,1242 0/0:36,0:36:99:0,102,1173 0/0:36,0:36:99:0,102,1195 0/0:17,0:17:45.13:0,45,531 0/0:34,0:34:99:0,99,1131 0/0:111,0:112:99:0,307,3573 0/0:17,0:17:51.14:0,51,583 0/0:25,0:25:72.20:0,72,836 0/0:32,0:32:93.26:0,93,1085 0/0:43,0:44:99:0,123,1455 0/0:42,0:42:99:0,120,1419 0/0:49,0:49:99:0,129,1550 0/0:44,0:44:99:0,123,1448 0/0:93,0:93:99:0,256,3062 0/1:27,29:56:99:957,0,766 0/0:54,0:55:99:0,150,1797 0/1:34,29:63:99:884,0,885 0/0:33,0:33:87.26:0,87,1050 0/0:40,0:40:99:0,111,1317 0/0:30,0:30:84.23:0,84,974 0/0:39,0:39:99:0,108,1282 0/0:24,0:24:72.20:0,72,823 0/0:47,0:47:99:0,132,1581 0/0:31,0:31:87.26:0,87,1037 0/0:30,0:30:81.24:0,81,978 0/0:26,0:26:72.21:0,72,856 0/0:51,0:51:99:0,144,1711 0/0:37,0:37:93.25:0,93,1092 0/0:30,0:30:84.24:0,84,970 0/0:45,0:45:99:0,126,1466 0/0:43,1:44:99:0,123,1446 0/0:27,1:28:78.21:0,78,904 0/0:35,1:36:99:0,105,1218 17 29686005 . TGTGGCGG T 15044.71 . 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G T 37.08 . 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A G 37916.18 . 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C T 12525.93 . 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C T 7833.96 . 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C T 2267.13 . 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C T 2092.53 . 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C T 35095.79 . 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C T 3902.35 . 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T G 37.69 . 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C T 2831.32 . 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C T 6358.68 . 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T C 16747.43 . 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C T 2821.62 . 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A G 342.29 . 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C T 112927.57 . 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TA T 163.69 . 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T TGGGGG 4139.35 . 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C A 27.01 . AC=4;AF=0.111;AN=36;BaseQRankSum=-3.028;DP=9423;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.1534;InbreedingCoeff=0.1364;MQ=1.79;MQ0=9356;MQRankSum=-0.856;QD=0.04;ReadPosRankSum=-0.428 GT:AD:DP:GQ:PL ./. ./. ./. ./. 0/0:116,134:250:3.01:0,3,33 0/0:199,51:250:9.02:0,9,100 ./. ./. ./. ./. 0/0:148,59:207:6.02:0,6,67 ./. ./. 0/1:148,75:223:1.76:33,3,0 ./. ./. 0/0:153,73:226:3.01:0,3,33 ./. 0/0:164,77:241:3.01:0,3,33 0/0:164,85:249:9.02:0,9,101 ./. ./. ./. ./. ./. 0/0:181,66:247:3.01:0,3,33 ./. 0/0:108,49:157:12.04:0,12,143 0/0:151,79:230:6.02:0,6,67 0/0:134,50:184:3.01:0,3,39 1/1:139,88:227:3.01:33,3,0 ./. ./. 0/1:169,77:246:24.43:24,0,48 ./. 0/0:122,88:210:3.01:0,3,33 ./. ./. 0/0:170,45:215:5.99:0,6,55 0/0:130,102:232:3.01:0,3,33 0/0:104,71:175:6.02:0,6,67 0/0:140,105:245:3.01:0,3,33 17 36478450 . G T 2357.85 . 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C T 161.55 . AC=3;AF=0.036;AN=84;BaseQRankSum=0.846;DP=218;Dels=0.00;FS=5.732;HRun=0;HaplotypeScore=0.1504;InbreedingCoeff=-0.0879;MQ=58.56;MQ0=0;MQRankSum=-0.810;QD=12.43;ReadPosRankSum=-0.345 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,66 0/0:3,0:3:6.02:0,6,79 0/0:3,0:3:9.02:0,9,96 0/1:2,4:6:56.95:116,0,57 0/0:5,0:5:15.04:0,15,176 0/0:4,0:5:9.03:0,9,114 0/0:1,0:1:3.01:0,3,31 0/0:2,0:2:6.01:0,6,60 0/0:4,0:4:12.03:0,12,131 0/0:4,0:4:9.02:0,9,109 0/0:8,0:8:24.07:0,24,282 0/0:4,0:4:9.03:0,9,115 0/0:7,0:7:21.03:0,21,212 0/0:4,0:4:12.03:0,12,137 0/0:19,0:19:51.15:0,51,604 0/0:5,0:5:15.04:0,15,164 0/0:10,0:10:27.08:0,27,311 0/0:5,0:5:15.03:0,15,172 0/0:6,0:6:18.04:0,18,199 0/0:9,0:9:27.07:0,27,301 0/0:7,0:7:21.05:0,21,234 0/0:7,0:7:21.06:0,21,243 0/1:1,2:3:27.95:63,0,28 0/0:3,0:3:6.02:0,6,70 0/1:2,2:4:53.72:56,0,54 0/0:2,0:2:3.01:0,3,35 0/0:6,0:6:9.02:0,9,107 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,30 0/0:8,0:8:21.05:0,21,218 0/0:3,0:3:9.02:0,9,98 0/0:7,0:7:18.05:0,18,199 0/0:9,0:9:21.06:0,21,242 0/0:7,0:7:15.04:0,15,171 0/0:2,0:2:6.02:0,6,65 0/0:3,0:3:6.01:0,6,64 0/0:6,0:6:15.04:0,15,164 0/0:6,0:6:12.03:0,12,138 0/0:5,0:5:12.03:0,12,123 0/0:6,0:6:18.04:0,18,188 0/0:5,0:5:9.03:0,9,112 0/0:5,0:5:12.04:0,12,141 17 36552190 . A G 5021.09 . AC=7;AF=0.083;AN=84;BaseQRankSum=14.068;DP=1977;Dels=0.00;FS=4.788;HRun=0;HaplotypeScore=0.7119;InbreedingCoeff=0.2208;MQ=59.06;MQ0=0;MQRankSum=-0.038;QD=17.50;ReadPosRankSum=1.582 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,141,1762 0/0:42,0:42:99:0,105,1323 0/0:39,0:39:99:0,99,1252 0/1:30,32:62:99:1050,0,867 1/1:0,48:48:99:1829,135,0 0/0:51,0:51:99:0,129,1686 0/0:51,0:51:99:0,144,1851 0/0:42,0:42:99:0,123,1538 0/1:20,21:41:99:616,0,606 0/1:24,24:48:99:642,0,715 0/0:45,0:45:99:0,132,1601 0/0:38,0:38:99:0,102,1262 0/1:25,15:40:99:430,0,737 0/0:39,0:39:99:0,114,1395 0/0:127,0:127:99:0,337,4122 0/0:32,0:32:93.28:0,93,1126 0/0:34,1:35:57.72:0,58,1117 0/1:32,16:48:99:454,0,899 0/0:67,0:67:99:0,187,2327 0/0:65,0:65:99:0,169,2133 0/0:59,0:60:99:0,150,1886 0/0:30,0:30:81.24:0,81,996 0/0:74,0:74:99:0,196,2501 0/0:43,0:43:99:0,126,1591 0/0:50,0:50:99:0,144,1793 0/0:43,0:43:99:0,114,1466 0/0:32,0:32:87.26:0,87,1071 0/0:34,0:34:96.30:0,96,1194 0/0:36,0:36:93.29:0,93,1167 0/0:39,0:39:99:0,111,1354 0/0:27,0:27:78.24:0,78,953 0/0:65,0:65:99:0,175,2196 0/0:42,0:42:99:0,111,1386 0/0:37,0:37:99:0,99,1251 0/0:45,0:45:99:0,126,1553 0/0:49,0:49:99:0,132,1649 0/0:46,0:46:99:0,114,1445 0/0:46,0:46:99:0,123,1508 0/0:47,0:47:99:0,129,1602 0/0:38,0:38:99:0,108,1307 0/0:29,0:29:81.24:0,81,989 0/0:54,0:54:99:0,156,1916 17 36552212 . C T 1029.66 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.795;DP=1708;Dels=0.00;FS=2.334;HRun=1;HaplotypeScore=1.1545;InbreedingCoeff=-0.0244;MQ=59.10;MQ0=0;MQRankSum=0.494;QD=12.56;ReadPosRankSum=0.825 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,114,1472 0/0:42,0:42:99:0,105,1339 0/0:33,0:33:84.27:0,84,1109 0/0:59,0:60:99:0,153,2062 0/0:44,0:44:99:0,117,1581 0/0:38,0:38:93.30:0,93,1253 0/0:39,0:39:99:0,117,1511 0/0:37,0:37:99:0,108,1468 0/0:34,0:34:96.31:0,96,1234 0/0:39,0:39:99:0,108,1385 0/0:47,0:47:99:0,135,1691 0/0:31,0:31:81.20:0,81,1009 0/0:37,0:37:99:0,102,1310 0/0:36,0:36:99:0,102,1284 0/0:113,0:114:99:0,289,3721 0/0:26,0:26:78.25:0,78,987 0/0:32,0:32:90.29:0,90,1150 0/0:43,0:43:99:0,114,1459 0/0:58,0:58:99:0,160,2051 0/0:52,0:52:99:0,138,1804 0/0:50,0:50:99:0,123,1615 0/0:31,0:31:84.25:0,84,1049 0/0:61,0:61:99:0,166,2239 0/0:24,0:24:69.22:0,69,926 0/0:43,0:43:99:0,117,1587 0/0:38,0:38:99:0,105,1434 0/0:26,0:26:69.22:0,69,891 0/0:36,0:36:99:0,102,1285 0/0:28,0:28:72.23:0,72,940 0/0:30,0:30:90.29:0,90,1133 0/0:23,0:23:69.22:0,69,881 0/0:48,0:48:99:0,126,1658 0/0:36,0:36:93.30:0,93,1201 0/0:35,0:35:96.30:0,96,1218 0/0:36,0:36:96.30:0,96,1229 0/0:39,0:39:99:0,108,1389 0/1:18,21:39:99:609,0,503 0/1:26,17:43:99:483,0,815 0/0:43,0:43:99:0,123,1554 0/0:37,0:37:99:0,99,1274 0/0:31,0:31:90.28:0,90,1134 0/0:49,0:49:99:0,138,1780 17 36715877 . G C 222.35 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.945;DP=814;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8864;InbreedingCoeff=-0.0248;MQ=59.05;MQ0=1;MQRankSum=0.367;QD=10.59;ReadPosRankSum=-0.451 GT:AD:DP:GQ:PL 0/0:18,0:18:51.16:0,51,654 0/0:20,0:20:45.14:0,45,595 0/0:18,0:18:42.13:0,42,538 0/0:45,0:45:99:0,126,1639 0/0:43,0:43:99:0,114,1498 0/0:23,0:23:63.20:0,63,827 0/0:22,0:23:57.18:0,57,756 0/0:27,0:27:75.23:0,75,964 0/0:10,0:10:24.07:0,24,299 0/0:20,0:20:57.17:0,57,696 0/0:18,0:18:48.12:0,48,551 0/0:14,0:15:36.11:0,36,445 0/0:12,0:12:33.10:0,33,413 0/0:12,0:12:30.09:0,30,374 0/0:38,0:38:99:0,108,1354 0/0:22,0:22:54.16:0,54,650 0/0:8,0:8:24.07:0,24,285 0/0:13,0:13:33.10:0,33,415 0/0:19,0:19:42.12:0,42,517 0/0:26,0:26:66.20:0,66,826 0/0:21,0:21:57.18:0,57,722 0/0:26,0:26:72.20:0,72,871 0/0:41,0:41:99:0,114,1487 0/0:16,0:16:39.13:0,39,536 0/0:28,0:28:72.22:0,72,940 0/0:23,0:23:57.19:0,57,761 0/0:9,0:9:24.08:0,24,307 0/0:15,0:15:36.12:0,36,462 0/0:14,0:14:39.11:0,39,476 0/0:16,0:16:48.15:0,48,592 0/0:11,0:11:33.10:0,33,404 0/0:18,0:18:45.14:0,45,585 0/0:34,0:34:93.28:0,93,1148 0/1:6,2:8:47.93:48,0,206 0/1:5,8:13:99:237,0,157 0/0:11,0:11:27.08:0,27,331 0/0:20,0:21:45.14:0,45,562 0/0:7,0:7:21.06:0,21,253 0/0:10,0:10:30.09:0,30,367 0/0:22,0:22:63.18:0,63,780 0/0:11,0:11:27.08:0,27,315 0/0:9,0:9:27.08:0,27,324 17 36715878 . G T 202.07 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.195;DP=813;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.0726;InbreedingCoeff=-0.0248;MQ=59.03;MQ0=1;MQRankSum=0.078;QD=9.62;ReadPosRankSum=-0.250 GT:AD:DP:GQ:PL 0/0:19,0:19:51.13:0,51,615 0/0:20,0:20:45.14:0,45,592 0/0:18,0:18:42.13:0,42,539 0/0:45,0:46:99:0,123,1571 0/0:43,0:43:99:0,114,1487 0/0:23,0:23:63.17:0,63,801 0/0:23,0:23:54.17:0,54,689 0/0:26,0:26:69.21:0,69,863 0/0:11,0:11:27.07:0,27,325 0/0:19,0:19:54.14:0,54,635 0/0:19,0:19:45.12:0,45,522 0/0:13,0:14:30.09:0,30,371 0/0:11,0:11:30.08:0,30,355 0/0:12,0:12:30.09:0,30,370 0/0:38,0:38:99:0,102,1272 0/0:20,0:20:54.14:0,54,637 0/0:8,0:8:24.07:0,24,295 0/0:12,1:13:30.06:0,30,342 0/0:18,0:18:42.12:0,42,517 0/0:27,0:27:66.18:0,66,818 0/0:20,0:21:48.13:0,48,579 0/0:25,0:25:69.21:0,69,853 0/0:40,0:40:99:0,99,1303 0/0:17,0:17:39.13:0,39,520 0/0:27,0:27:63.19:0,63,821 0/0:22,1:23:54.17:0,54,711 0/0:9,0:9:21.07:0,21,271 0/0:14,0:14:36.10:0,36,441 0/0:15,0:15:39.11:0,39,488 0/0:16,0:16:48.14:0,48,575 0/0:11,0:11:33.05:0,33,377 0/0:19,0:19:45.13:0,45,553 0/0:34,0:34:87.25:0,87,1069 0/1:6,2:8:45.49:45,0,200 0/1:5,8:13:99:219,0,152 0/0:11,0:11:27.06:0,27,322 0/0:19,0:19:45.12:0,45,533 0/0:8,0:8:21.04:0,21,235 0/0:11,0:11:27.08:0,27,332 0/0:24,0:24:66.16:0,66,789 0/0:11,0:11:30.09:0,30,358 0/0:9,0:9:27.06:0,27,308 17 36715926 . A C 336.86 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.452;DP=430;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.6744;InbreedingCoeff=-0.0400;MQ=58.39;MQ0=0;MQRankSum=2.124;QD=13.47;ReadPosRankSum=0.310 GT:AD:DP:GQ:PL 0/0:9,0:10:27.08:0,27,308 0/0:10,0:10:30.07:0,30,329 0/0:6,0:6:18.05:0,18,210 0/0:11,1:12:30.06:0,30,309 0/0:16,0:17:48.13:0,48,534 0/0:10,1:11:2.34:1,0,289 0/0:12,0:12:36.10:0,36,406 0/0:13,0:13:39.10:0,39,430 0/0:6,0:7:18.05:0,18,209 0/0:6,1:7:18.05:0,18,208 0/0:4,0:4:12.04:0,12,141 0/0:5,0:6:15.04:0,15,162 0/0:5,1:6:15.04:0,15,170 0/0:8,0:8:21.06:0,21,239 0/0:26,0:27:75.21:0,75,862 0/0:10,0:10:30.09:0,30,348 0/0:4,0:4:9.03:0,9,103 0/0:4,0:4:12.04:0,12,139 0/1:4,7:11:98.79:210,0,99 0/1:7,7:14:99:189,0,209 0/0:9,1:11:24.05:0,24,261 0/0:11,0:11:33.07:0,33,357 0/0:20,0:20:57.16:0,57,655 0/0:13,1:14:33.08:0,33,372 0/0:8,0:8:24.07:0,24,271 0/0:13,0:13:36.08:0,36,391 0/0:7,0:7:21.06:0,21,235 0/0:5,0:7:15.04:0,15,172 0/0:11,0:11:30.08:0,30,338 0/0:10,0:10:27.07:0,27,307 0/0:13,0:15:39.10:0,39,444 0/0:11,0:12:27.07:0,27,308 0/0:17,0:18:45.12:0,45,507 0/0:6,0:6:18.05:0,18,203 0/0:4,0:4:12.04:0,12,141 0/0:7,0:7:21.01:0,21,207 0/0:20,0:20:57.15:0,57,639 0/0:7,0:7:18.05:0,18,205 0/0:12,1:13:36.09:0,36,416 0/0:8,0:9:21.06:0,21,244 0/0:5,0:5:15.04:0,15,162 0/0:3,0:3:9.03:0,9,107 17 36892402 . CGT C 155.98 . AC=13;AF=0.155;AN=84;BaseQRankSum=0.965;DP=337;FS=215.897;HRun=0;HaplotypeScore=24.6651;InbreedingCoeff=-0.2306;MQ=58.79;MQ0=0;MQRankSum=0.973;QD=1.16;ReadPosRankSum=-6.348 GT:AD:DP:GQ:PL 0/0:10,0:10:1.85:3,0,416 0/0:5,0:5:12.92:0,13,207 0/0:9,0:9:21.07:0,21,409 0/1:9,0:9:67.43:67,0,279 0/1:11,0:11:7.05:7,0,405 0/0:3,0:2:9.03:0,9,183 0/0:5,0:5:15.05:0,15,305 0/1:9,0:9:5.76:6,0,401 0/0:6,0:6:15.05:0,15,290 0/0:9,0:9:3.35:0,3,291 0/1:8,0:8:6.42:6,0,285 0/0:4,0:4:9.03:0,9,183 0/0:2,0:2:6.02:0,6,122 0/1:7,0:7:22.72:23,0,113 0/1:23,0:23:12.32:12,0,857 0/0:8,0:8:21.07:0,21,413 0/0:5,0:5:12.04:0,12,242 0/0:6,0:6:15.04:0,15,269 0/1:6,0:6:22.72:23,0,113 0/1:6,0:6:18.56:19,0,229 0/0:13,0:13:33.11:0,33,642 0/0:10,0:10:18.06:0,18,366 0/1:11,0:11:24.56:25,0,398 0/0:4,0:4:9.03:0,9,187 0/0:4,0:4:9.03:0,9,173 0/0:3,0:3:6.02:0,6,122 0/0:8,0:8:0.71:0,1,346 0/0:6,0:6:12.73:0,13,300 0/0:4,0:4:12.04:0,12,244 0/1:6,5:11:28.34:28,0,274 0/0:5,0:5:15.05:0,15,302 0/0:14,0:14:30.10:0,30,609 0/0:10,0:10:18.06:0,18,366 0/0:5,0:5:12.01:0,12,205 0/0:6,0:6:9.10:0,9,240 0/0:6,0:6:15.05:0,15,305 0/1:18,0:18:12.48:12,0,804 0/1:6,0:6:15.75:16,0,229 0/0:11,0:11:2.21:2,0,461 0/1:9,0:9:53.62:54,0,342 0/0:12,0:12:30.10:0,30,604 0/0:10,0:10:24.08:0,24,478 17 36892403 . G C 121.92 . AC=13;AF=0.155;AN=84;BaseQRankSum=-3.242;DP=337;Dels=0.01;FS=226.257;HRun=1;HaplotypeScore=0.5344;InbreedingCoeff=-0.2212;MQ=58.79;MQ0=0;MQRankSum=0.404;QD=1.04;ReadPosRankSum=-6.657 GT:AD:DP:GQ:PL 0/1:9,1:10:13.29:13,0,186 0/0:4,1:5:12.03:0,12,139 0/0:7,1:9:21.06:0,21,249 0/1:6,3:9:21.46:21,0,141 0/1:7,3:11:12.90:13,0,241 0/0:3,0:3:9.03:0,9,119 0/0:5,0:5:15.05:0,15,192 0/0:7,2:9:20.55:0,21,246 0/0:5,1:6:12.03:0,12,137 0/0:5,4:9:14.53:0,15,155 0/0:5,3:8:9.91:0,10,106 0/0:4,0:4:9.02:0,9,103 0/0:2,0:2:6.01:0,6,65 0/1:3,4:7:24.41:24,0,63 0/1:17,6:23:24.09:24,0,460 0/0:7,1:8:21.06:0,21,236 0/0:4,1:5:12.04:0,12,140 0/0:5,1:6:15.04:0,15,171 0/1:2,4:6:27.10:27,0,62 0/0:5,1:6:9.03:0,9,109 0/0:12,1:13:33.10:0,33,395 0/0:6,3:10:15.05:0,15,181 0/1:7,4:11:17.15:17,0,254 0/0:3,1:4:9.03:0,9,119 0/0:3,1:4:9.02:0,9,107 0/0:2,1:3:6.02:0,6,82 0/1:6,2:8:14.19:14,0,202 0/1:5,1:6:6.66:7,0,151 0/0:4,0:4:12.03:0,12,141 0/0:6,0:6:15.04:0,15,174 0/0:5,0:5:15.05:0,15,187 0/0:11,3:14:30.08:0,30,346 0/0:6,4:10:18.06:0,18,223 0/1:3,2:5:15.64:16,0,92 0/1:4,2:6:22.75:23,0,126 0/0:5,1:6:15.04:0,15,173 0/0:15,3:18:5.10:0,5,383 0/1:4,2:6:20.21:20,0,130 0/0:8,3:11:0.90:6,0,256 0/1:6,2:9:39.91:40,0,185 0/0:10,2:12:30.09:0,30,356 0/0:7,3:10:21.07:0,21,259 17 36892404 . T C 5.24 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.995;DP=290;Dels=0.02;FS=61.555;HRun=2;HaplotypeScore=0.5333;InbreedingCoeff=-0.0754;MQ=58.79;MQ0=0;MQRankSum=0.766;QD=0.66;ReadPosRankSum=-4.990 GT:AD:DP:GQ:PL 0/0:8,2:10:18.04:0,18,203 0/0:3,1:4:9.03:0,9,106 0/0:7,0:7:21.05:0,21,245 0/0:5,3:8:0.41:10,0,128 0/0:7,2:10:21.05:0,21,244 0/0:3,0:3:9.01:0,9,93 0/0:5,0:5:12.04:0,12,146 0/0:7,1:8:20.93:0,21,233 0/0:5,0:5:12.03:0,12,139 0/0:5,2:7:14.72:0,15,156 0/0:5,0:6:15.05:0,15,179 0/0:4,0:4:9.03:0,9,104 0/0:2,0:2:3.01:0,3,35 0/0:4,1:5:6.02:0,6,73 0/0:16,1:18:42.12:0,42,486 0/0:7,0:7:21.06:0,21,238 0/0:4,1:5:9.03:0,9,109 0/0:4,0:4:9.03:0,9,111 0/0:2,1:4:6.02:0,6,74 0/0:4,1:6:12.04:0,12,148 0/0:11,0:11:30.07:0,30,345 0/0:6,1:7:18.05:0,18,208 0/0:7,1:8:0.26:12,0,232 0/0:3,0:3:9.03:0,9,104 0/0:3,0:3:9.03:0,9,105 0/0:3,0:3:9.03:0,9,105 0/0:7,1:8:1.89:3,0,198 0/0:5,1:6:12.04:0,12,147 0/0:4,0:4:12.04:0,12,140 0/0:5,0:6:15.05:0,15,181 0/0:5,0:5:15.05:0,15,183 0/0:11,0:11:24.07:0,24,285 0/0:6,1:8:18.06:0,18,222 0/0:4,0:4:9.02:0,9,106 0/0:4,0:5:12.04:0,12,145 0/0:6,0:6:15.04:0,15,167 0/0:16,2:18:42.11:0,42,479 0/0:4,1:5:12.04:0,12,146 0/0:9,0:9:24.07:0,24,294 0/1:6,2:8:46.42:46,0,181 0/0:10,1:11:30.09:0,30,351 0/0:8,0:8:21.07:0,21,271 17 36925983 . G C 2873.03 . 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C T 1071.84 . AC=30;AF=0.429;AN=70;BaseQRankSum=4.017;DP=123;Dels=0.00;FS=3.675;HRun=0;HaplotypeScore=0.0523;InbreedingCoeff=0.1119;MQ=58.20;MQ0=0;MQRankSum=-1.146;QD=17.01;ReadPosRankSum=-0.128 GT:AD:DP:GQ:PL 0/1:3,2:5:57.21:57,0,92 0/0:3,0:3:9.02:0,9,97 ./. 0/0:1,0:1:3.01:0,3,32 ./. 0/0:1,0:1:3.01:0,3,39 ./. 1/1:0,2:2:6.02:73,6,0 1/1:0,2:2:6.02:74,6,0 0/1:0,1:1:1.76:34,3,0 1/1:0,1:1:3.01:36,3,0 1/1:0,4:4:9.02:110,9,0 1/1:0,2:2:6.02:70,6,0 0/1:1,1:2:24.58:30,0,25 0/0:18,0:18:42.11:0,42,482 0/1:3,1:4:23.22:23,0,96 0/0:2,0:2:6.02:0,6,73 0/1:2,1:3:31.78:33,0,32 0/0:2,0:2:6.02:0,6,69 0/1:1,2:3:23.47:62,0,23 0/0:8,0:8:24.06:0,24,261 1/1:0,2:2:6.02:71,6,0 ./. 1/1:0,2:2:6.02:75,6,0 ./. 0/0:1,0:1:3.01:0,3,36 0/1:1,1:2:30.96:31,0,31 ./. 0/0:5,0:5:12.03:0,12,129 0/1:3,2:5:55.44:55,0,89 0/0:1,0:1:3.01:0,3,33 0/0:6,0:6:15.04:0,15,179 1/1:0,1:1:3.01:34,3,0 0/1:1,1:2:26.48:32,0,26 0/0:4,0:4:12.01:0,12,123 ./. 0/0:5,0:5:15.02:0,15,157 0/1:4,2:6:54.21:54,0,113 0/0:2,0:2:6.02:0,6,74 0/1:2,2:4:53.90:63,0,54 0/1:1,2:3:27.42:39,0,27 1/1:0,7:7:15.05:185,15,0 17 37093490 . C T 1110.50 . 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T C 684.21 . 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G A 1611.08 . 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T A 773.74 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.555;DP=2973;DS;Dels=0.00;FS=1.141;HRun=0;HaplotypeScore=1.1145;InbreedingCoeff=-0.0120;MQ=59.62;MQ0=0;MQRankSum=0.278;QD=15.47;ReadPosRankSum=-0.136 GT:AD:DP:GQ:PL 0/0:44,1:45:99:0,123,1506 0/0:54,0:54:99:0,156,1915 0/0:37,0:37:99:0,111,1341 0/0:142,0:142:99:0,406,5011 0/0:155,0:155:99:0,439,5505 0/0:141,0:141:99:0,403,5117 0/0:131,0:131:99:0,376,4695 0/0:160,0:160:99:0,454,5662 0/0:58,0:58:99:0,163,2001 0/0:40,0:40:99:0,114,1401 0/0:39,0:39:99:0,117,1438 0/0:47,0:47:99:0,138,1709 0/0:44,0:45:99:0,123,1518 0/0:55,0:55:99:0,153,1904 0/0:146,0:148:99:0,412,5008 0/0:38,0:38:99:0,102,1281 0/0:63,0:63:99:0,184,2241 0/0:50,0:50:99:0,150,1808 0/0:63,0:63:99:0,175,2181 0/0:69,0:69:99:0,193,2362 0/0:36,0:36:99:0,102,1281 0/0:34,0:34:93.28:0,93,1129 0/0:144,0:145:99:0,409,5109 0/0:132,0:132:99:0,361,4580 0/0:158,0:158:99:0,448,5624 0/0:108,0:108:99:0,304,3824 0/0:42,0:42:99:0,123,1517 0/0:49,0:49:99:0,138,1687 0/1:22,28:50:99:820,0,662 0/0:58,0:58:99:0,169,2084 0/0:27,0:27:78.24:0,78,955 0/0:59,0:59:99:0,175,2135 0/0:48,0:48:99:0,132,1622 0/0:53,0:53:99:0,156,1936 0/0:42,0:42:99:0,120,1496 0/0:59,0:59:99:0,166,2049 0/0:47,0:47:99:0,135,1642 0/0:48,0:48:99:0,144,1767 0/0:44,0:44:99:0,129,1594 0/0:59,0:59:99:0,166,2035 0/0:44,0:44:99:0,126,1553 0/0:51,0:51:99:0,144,1772 17 37673738 . C A 2487.04 . 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G A 94901.04 . AC=53;AF=0.631;AN=84;BaseQRankSum=8.273;DP=4453;DS;Dels=0.00;FS=2.307;HRun=0;HaplotypeScore=2.8753;InbreedingCoeff=-0.0736;MQ=59.08;MQ0=0;MQRankSum=1.046;QD=23.64;ReadPosRankSum=6.758 GT:AD:DP:GQ:PL 0/1:41,42:83:99:1198,0,1138 0/1:34,34:68:99:944,0,935 0/1:48,37:85:99:994,0,1288 1/1:0,214:214:99:6990,545,0 1/1:0,158:158:99:5335,415,0 0/1:77,69:146:99:1878,0,2191 0/1:55,49:104:99:1286,0,1506 0/0:124,0:124:99:0,307,3923 0/1:35,44:79:99:1292,0,848 1/1:1,84:85:99:2728,190,0 0/1:29,34:63:99:1013,0,761 0/1:31,29:61:99:836,0,749 0/1:37,41:78:99:1156,0,957 1/1:0,71:71:99:2464,199,0 1/1:0,236:236:99:7187,569,0 0/1:49,42:91:99:1162,0,1306 0/1:29,43:72:99:1222,0,696 1/1:0,59:59:99:1865,147,0 1/1:1,185:187:99:6009,475,0 1/1:2,197:200:99:6307,503,0 0/1:64,72:139:99:1858,0,1653 0/1:42,41:84:99:1138,0,1130 1/1:0,217:217:99:7075,551,0 1/1:0,105:105:99:3263,256,0 0/1:67,68:135:99:1947,0,1892 1/1:0,97:97:99:3305,262,0 0/1:33,28:62:99:840,0,906 0/0:75,0:75:99:0,187,2237 0/1:36,35:71:99:958,0,961 1/1:0,71:71:99:2300,181,0 0/1:45,28:73:99:762,0,1261 0/1:68,76:146:99:1939,0,1751 1/1:0,128:129:99:4074,328,0 0/0:83,0:83:99:0,211,2552 0/1:41,43:84:99:1270,0,1045 0/0:89,0:89:99:0,247,2950 1/1:1,181:182:99:5790,457,0 1/1:1,67:68:99:2204,178,0 1/1:1,66:68:99:2189,151,0 0/0:68,0:68:99:0,193,2245 0/1:30,31:61:99:891,0,834 0/1:39,42:81:99:1229,0,970 17 37815749 . G A 2767.32 . AC=4;AF=0.048;AN=84;BaseQRankSum=7.250;DP=2264;Dels=0.00;FS=2.129;HRun=0;HaplotypeScore=1.3999;InbreedingCoeff=-0.0500;MQ=59.26;MQ0=0;MQRankSum=-0.113;QD=12.58;ReadPosRankSum=2.750 GT:AD:DP:GQ:PL 0/1:18,11:29:99:327,0,438 0/0:30,0:30:84.22:0,84,948 0/0:22,0:22:60.17:0,60,700 0/0:159,0:159:99:0,364,4790 0/0:124,0:124:99:0,304,3910 0/1:48,45:93:99:1234,0,1131 0/0:84,0:84:99:0,211,2652 0/1:38,38:76:99:982,0,978 0/0:35,0:35:90.25:0,90,1057 0/0:35,0:35:90.25:0,90,1069 0/0:30,0:30:72.22:0,72,892 0/0:26,0:26:72.17:0,72,823 0/0:33,0:33:87.24:0,87,1021 0/0:33,0:33:87.23:0,87,1014 0/0:123,0:124:99:0,310,3686 0/1:11,11:22:99:311,0,270 0/0:33,0:33:87.25:0,87,1022 0/0:39,0:39:99:0,102,1188 0/0:65,0:65:99:0,165,1894 0/0:92,0:92:99:0,226,2701 0/0:48,0:48:99:0,126,1507 0/0:43,0:43:96.26:0,96,1198 0/0:164,0:164:99:0,403,5217 0/0:89,0:90:99:0,214,2750 0/0:91,0:91:99:0,226,2880 0/0:105,0:105:99:0,247,3191 0/0:22,0:22:63.17:0,63,715 0/0:29,0:29:75.21:0,75,892 0/0:43,0:45:99:0,111,1330 0/0:28,0:28:66.20:0,66,822 0/0:25,0:25:63.18:0,63,744 0/0:48,0:48:99:0,126,1509 0/0:38,0:38:96.27:0,96,1135 0/0:31,0:31:84.21:0,84,962 0/0:33,0:33:87.23:0,87,1024 0/0:44,0:44:99:0,108,1314 0/0:60,0:60:99:0,135,1608 0/0:34,0:34:93.25:0,93,1061 0/0:24,0:24:69.19:0,69,798 0/0:26,0:26:69.18:0,69,790 0/0:31,0:31:87.19:0,87,962 0/0:21,0:21:63.17:0,63,709 17 37819069 . CGGTA C 924.58 . AC=1;AF=0.012;AN=84;BaseQRankSum=6.233;DP=2789;FS=5.404;HRun=0;HaplotypeScore=280.9141;InbreedingCoeff=-0.0120;MQ=59.09;MQ0=0;MQRankSum=-1.064;QD=18.49;ReadPosRankSum=0.819 GT:AD:DP:GQ:PL 0/0:25,0:25:75.26:0,75,2104 0/0:46,0:46:99:0,132,3635 0/0:38,0:38:99:0,111,3130 0/0:168,0:168:99:0,500,13958 0/0:160,0:160:99:0,479,13417 0/0:100,0:100:99:0,301,8519 0/0:80,0:80:99:0,241,6723 0/0:96,0:96:99:0,286,8006 0/0:51,0:51:99:0,154,4190 0/0:43,0:43:99:0,126,3476 0/1:32,18:50:99:980,0,2527 0/0:33,0:33:99:0,99,2790 0/0:29,0:29:87.28:0,87,2402 0/0:38,0:38:99:0,114,3065 0/0:143,0:143:99:0,415,11364 0/0:48,0:48:99:0,144,4009 0/0:53,0:52:99:0,154,4270 0/0:31,0:31:93.32:0,93,2531 0/0:86,0:86:99:0,259,7043 0/0:86,0:86:99:0,256,7062 0/0:69,0:69:99:0,194,5284 0/0:53,0:53:99:0,160,4389 0/0:183,0:182:99:0,551,15380 0/0:97,0:97:99:0,280,7741 0/0:100,0:100:99:0,301,8400 0/0:99,0:99:99:0,298,8273 0/0:28,0:28:84.29:0,84,2365 0/0:51,0:51:99:0,154,4357 0/0:38,0:38:99:0,114,3172 0/0:44,0:44:99:0,132,3662 0/0:41,0:41:99:0,123,3399 0/0:103,0:103:99:0,304,8501 0/0:57,0:57:99:0,172,4778 0/0:41,0:41:99:0,117,3326 0/0:39,0:39:99:0,117,3273 0/0:54,0:54:99:0,163,4499 0/0:64,0:64:99:0,190,5292 0/0:45,0:45:99:0,126,3536 0/0:53,0:53:99:0,157,4392 0/0:34,0:34:99:0,102,2864 0/0:40,0:40:99:0,120,3232 0/0:52,0:52:99:0,154,4230 17 37844241 . G A 12.20 . AC=1;AF=0.013;AN=80;BaseQRankSum=-1.547;DP=114;Dels=0.00;FS=2.602;HRun=1;HaplotypeScore=0.2124;InbreedingCoeff=-0.1085;MQ=57.12;MQ0=0;MQRankSum=-1.005;QD=3.05;ReadPosRankSum=0.237 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,77 0/0:3,0:3:6.02:0,6,74 0/0:1,0:1:3.01:0,3,39 0/0:5,0:5:15.05:0,15,191 0/0:4,0:4:12.04:0,12,149 0/0:3,0:3:9.03:0,9,117 0/0:4,0:4:12.04:0,12,158 0/1:1,3:4:24.41:57,0,24 0/0:1,0:1:3.01:0,3,35 0/0:6,0:6:15.05:0,15,188 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.03:0,9,105 0/0:7,0:7:21.06:0,21,254 0/0:1,0:1:3.01:0,3,34 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:2.98:0,3,22 0/0:6,0:6:15.05:0,15,194 0/0:4,0:4:12.04:0,12,156 0/0:5,0:5:15.04:0,15,178 0/0:1,0:1:3.01:0,3,34 0/0:5,0:5:15.04:0,15,187 0/0:2,0:2:6.02:0,6,79 0/0:2,0:2:6.02:0,6,76 0/0:5,0:5:15.05:0,15,189 0/0:1,0:1:3.01:0,3,31 0/0:4,0:4:12.03:0,12,140 0/0:3,0:3:9.03:0,9,113 0/0:2,0:2:6.02:0,6,72 0/0:1,0:1:3.01:0,3,37 0/0:5,0:5:15.05:0,15,185 0/0:2,0:2:6.02:0,6,76 ./. 0/0:2,0:2:6.02:0,6,73 ./. 0/0:2,0:2:6.02:0,6,71 0/0:1,0:1:3.01:0,3,32 0/0:4,0:4:9.01:0,9,100 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.02:0,9,104 0/0:4,0:4:12.04:0,12,152 17 37879588 . A G 16336.86 . AC=16;AF=0.190;AN=84;BaseQRankSum=-12.633;DP=4729;DS;Dels=0.00;FS=4.530;HRun=0;HaplotypeScore=2.7704;InbreedingCoeff=0.2279;MQ=59.37;MQ0=0;MQRankSum=1.163;QD=14.60;ReadPosRankSum=-2.531 GT:AD:DP:GQ:PL 0/1:43,34:77:99:794,0,1198 0/0:83,0:83:99:0,232,2802 0/0:69,1:70:99:0,166,2054 0/0:245,0:245:99:0,629,7666 0/0:185,0:185:99:0,490,5964 0/0:182,0:182:99:0,433,5512 0/0:113,0:113:99:0,280,3552 0/0:152,0:152:99:0,373,4669 0/0:87,0:87:99:0,217,2626 0/0:88,0:88:99:0,232,2782 0/0:87,2:90:99:0,201,2711 0/1:40,30:71:99:754,0,1099 0/1:39,35:74:99:880,0,1039 0/1:48,35:83:99:840,0,1405 0/0:247,0:247:99:0,623,7551 0/0:91,0:91:99:0,247,2993 0/0:95,1:96:99:0,246,3185 0/0:63,0:63:99:0,171,2046 0/0:171,0:173:99:0,412,5150 0/1:109,83:193:99:2053,0,2803 0/0:154,0:154:99:0,403,4844 0/0:98,0:99:99:0,238,2894 0/0:238,0:238:99:0,605,7461 0/0:110,0:110:99:0,274,3419 0/0:170,0:170:99:0,415,5174 0/1:62,52:114:99:1327,0,1708 0/0:59,1:61:99:0,127,1894 0/0:80,0:80:99:0,223,2685 0/0:72,0:72:99:0,184,2194 1/1:0,69:69:99:2135,183,0 1/1:0,63:63:99:1845,159,0 0/0:157,0:157:99:0,397,4893 0/1:44,49:94:99:1270,0,1126 0/0:73,0:73:99:0,193,2378 0/1:30,28:58:99:704,0,802 0/1:45,35:80:99:833,0,1331 0/0:175,0:175:99:0,430,5263 0/0:91,0:92:99:0,235,2874 0/0:78,0:78:99:0,220,2604 0/1:42,30:73:99:776,0,1110 1/1:1,69:70:99:2126,154,0 0/0:86,0:86:99:0,232,2829 17 37882058 . C G 8.62 . AC=1;AF=0.012;AN=84;BaseQRankSum=-15.857;DP=1830;Dels=0.00;FS=398.356;HRun=1;HaplotypeScore=1.5538;InbreedingCoeff=-0.0437;MQ=58.74;MQ0=0;MQRankSum=0.030;QD=0.22;ReadPosRankSum=-10.145 GT:AD:DP:GQ:PL 0/0:28,6:34:69.18:0,69,826 0/0:27,9:36:33.92:0,34,731 0/0:34,6:41:75.19:0,75,911 0/0:83,30:113:99:0,135,2118 0/0:51,20:72:1.15:5,0,1156 0/0:45,15:60:10.82:0,11,1204 0/0:49,7:56:88.62:0,89,1381 0/0:55,13:68:99:0,120,1465 0/0:25,7:32:68.52:0,69,782 0/1:29,10:39:51.71:52,0,825 0/0:20,6:26:0.19:13,0,536 0/0:24,5:29:33.48:0,33,665 0/0:17,3:20:36.09:0,36,437 0/0:27,7:34:35.08:0,35,654 0/0:78,19:97:99:0,124,2286 0/0:31,3:34:24.06:0,24,884 0/0:25,5:30:27.59:0,28,605 0/0:26,6:32:57.15:0,57,704 0/0:39,6:45:99:0,108,1287 0/0:48,5:53:85.67:0,86,1326 0/0:47,6:53:50.29:0,50,1262 0/0:39,6:45:69.76:0,70,1161 0/0:95,20:117:99:0,139,2673 0/0:39,10:49:20.32:0,20,1080 0/0:61,9:70:99:0,128,1633 0/0:44,7:51:80.59:0,81,1210 0/0:12,2:14:3.61:0,4,375 0/0:19,6:25:20.51:0,21,513 0/0:24,4:28:66.18:0,66,797 0/0:23,6:29:35.38:0,35,737 0/0:27,5:32:78.23:0,78,959 0/0:43,9:52:49.08:0,49,1215 0/0:23,4:28:2.86:0,3,571 0/0:26,4:30:37.63:0,38,775 0/0:21,12:33:18.77:0,19,650 0/0:28,6:34:44.51:0,45,797 0/0:37,8:46:14.89:0,15,1079 0/0:29,2:31:38.56:0,39,790 0/0:24,5:29:56.61:0,57,627 0/0:26,4:30:66.17:0,66,793 0/0:20,5:26:24.06:0,24,676 0/0:25,2:27:59.89:0,60,679 17 37944519 . C G 329.21 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.725;DP=1326;Dels=0.00;FS=6.559;HRun=0;HaplotypeScore=0.5380;InbreedingCoeff=-0.0244;MQ=59.30;MQ0=0;MQRankSum=0.457;QD=8.90;ReadPosRankSum=-0.674 GT:AD:DP:GQ:PL 0/0:32,0:32:87.27:0,87,1090 0/0:28,0:28:78.24:0,78,990 0/0:30,0:30:84.26:0,84,1058 0/0:57,0:57:99:0,153,2045 0/0:46,0:46:99:0,126,1716 0/0:33,0:33:87.28:0,87,1156 0/0:34,0:34:87.28:0,87,1182 0/0:29,0:30:75.25:0,75,1024 0/0:23,0:23:66.21:0,66,839 0/0:24,0:24:69.22:0,69,880 0/0:23,0:23:66.21:0,66,831 0/0:19,0:19:54.17:0,54,681 0/0:28,0:28:78.25:0,78,989 0/0:25,0:25:75.21:0,75,936 0/0:80,0:80:99:0,208,2611 0/0:29,0:29:81.25:0,81,1029 0/0:20,0:20:57.18:0,57,726 0/0:28,0:28:78.25:0,78,1008 0/0:46,0:46:99:0,132,1684 0/0:52,0:52:99:0,138,1762 0/0:35,0:35:90.29:0,90,1159 0/0:35,0:36:96.31:0,96,1238 0/0:53,0:53:99:0,144,1943 0/0:23,0:23:66.21:0,66,876 0/0:38,0:38:96.32:0,96,1313 0/0:37,0:37:96.31:0,96,1316 0/0:25,0:25:72.23:0,72,919 0/0:18,0:18:51.15:0,51,632 0/0:26,0:26:78.24:0,78,976 0/1:14,7:21:99:163,0,402 0/1:7,9:16:99:229,0,214 0/0:43,0:43:99:0,117,1500 0/0:23,0:23:60.19:0,60,786 0/0:27,0:27:69.22:0,69,892 0/0:39,0:39:93.29:0,93,1210 0/0:29,0:29:81.24:0,81,1031 0/0:35,0:35:99:0,99,1254 0/0:21,0:21:54.17:0,54,688 0/0:25,0:25:72.19:0,72,864 0/0:23,0:23:60.19:0,60,767 0/0:22,0:22:63.19:0,63,780 0/0:23,0:23:63.19:0,63,791 17 37985638 . A C 7.31 . 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T G 419.64 . 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G A 57363.67 . 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C T 52617.98 . 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T C 2983.28 . 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G A 9240.18 . 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C T 89.98 . 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G A 8400.70 . AC=11;AF=0.131;AN=84;BaseQRankSum=-17.315;DP=1892;Dels=0.00;FS=0.504;HRun=0;HaplotypeScore=1.1843;InbreedingCoeff=-0.1507;MQ=58.81;MQ0=0;MQRankSum=0.753;QD=15.30;ReadPosRankSum=0.827 GT:AD:DP:GQ:PL 0/0:33,0:34:90.28:0,90,1131 0/0:31,0:31:93.27:0,93,1125 0/0:26,1:27:44.81:0,45,915 0/0:97,0:97:99:0,286,3723 0/0:80,0:80:99:0,217,2854 0/0:67,0:67:99:0,178,2355 0/0:57,0:57:99:0,163,2188 0/1:27,31:58:99:817,0,845 0/0:34,0:34:99:0,102,1274 0/0:23,0:24:66.21:0,66,841 0/0:36,0:36:99:0,99,1246 0/1:14,10:24:99:290,0,423 0/0:14,0:14:39.11:0,39,472 0/1:9,14:23:99:425,0,252 0/1:40,67:107:99:1941,0,1122 0/1:18,15:33:99:431,0,534 0/0:32,0:32:96.30:0,96,1195 0/0:25,0:25:72.22:0,72,892 0/0:69,0:69:99:0,193,2412 0/1:34,48:82:99:1357,0,970 0/0:61,0:61:99:0,175,2191 0/0:49,1:50:99:0,112,1772 0/0:89,0:89:99:0,259,3423 0/0:34,0:34:87.28:0,87,1186 0/0:67,0:67:99:0,190,2527 0/0:41,1:42:89.96:0,90,1571 0/0:32,0:32:84.26:0,84,1063 0/1:15,14:29:99:369,0,484 0/1:23,19:42:99:417,0,680 0/0:31,0:31:87.28:0,87,1111 0/0:28,0:28:84.26:0,84,1059 0/1:34,49:83:99:1442,0,985 0/0:48,0:48:99:0,132,1627 0/1:7,13:20:99:372,0,199 0/0:31,0:31:90.27:0,90,1123 0/1:28,20:48:99:539,0,914 0/0:46,0:46:99:0,123,1534 0/0:25,0:25:72.23:0,72,907 0/0:28,0:28:78.21:0,78,963 0/0:28,0:28:81.24:0,81,996 0/0:50,0:50:99:0,132,1639 0/0:26,0:26:72.23:0,72,914 17 38175897 . A C 154.72 . 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A G 20400.50 . 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C T 1883.69 . AC=2;AF=0.024;AN=84;BaseQRankSum=-10.580;DP=3752;Dels=0.00;FS=1.594;HRun=0;HaplotypeScore=2.1069;InbreedingCoeff=-0.0244;MQ=58.83;MQ0=0;MQRankSum=0.794;QD=12.64;ReadPosRankSum=3.017 GT:AD:DP:GQ:PL 0/0:84,0:84:99:0,223,2803 0/0:56,0:56:99:0,156,1904 0/0:63,0:63:99:0,174,2134 0/0:198,0:198:99:0,551,7180 0/0:164,1:165:99:0,431,6083 0/0:121,0:121:99:0,346,4538 0/0:135,0:135:99:0,388,5090 0/0:122,0:122:99:0,343,4486 0/0:51,0:51:99:0,141,1775 0/0:61,0:62:99:0,166,2084 0/0:58,0:59:99:0,166,2049 0/0:46,0:47:99:0,135,1689 0/0:36,0:36:99:0,105,1328 0/0:88,0:88:99:0,250,3068 0/0:223,0:223:99:0,611,7516 0/0:59,0:59:99:0,172,2134 0/0:74,0:74:99:0,214,2650 0/0:63,0:63:99:0,175,2185 0/0:119,0:120:99:0,334,4030 0/0:125,0:125:99:0,349,4356 0/0:114,0:114:99:0,316,3864 0/0:77,0:78:99:0,220,2772 0/0:173,0:173:99:0,491,6547 0/0:89,0:89:99:0,250,3277 0/0:137,0:137:99:0,385,5073 0/0:114,0:114:99:0,313,4177 0/0:57,0:57:99:0,156,1947 0/0:66,0:66:99:0,178,2204 0/0:60,0:60:99:0,165,2019 0/1:32,33:65:99:786,0,935 0/0:47,0:48:99:0,135,1741 0/0:129,1:130:99:0,355,4480 0/1:42,42:84:99:1160,0,1293 0/0:68,0:68:99:0,199,2438 0/0:62,0:62:99:0,178,2198 0/0:70,0:70:99:0,202,2467 0/0:102,0:102:99:0,289,3516 0/0:67,0:67:99:0,187,2332 0/0:51,0:51:99:0,144,1790 0/0:65,0:65:99:0,193,2361 0/0:49,0:49:99:0,132,1637 0/0:51,1:52:99:0,114,1784 17 38185122 . C G 309.21 . 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G C 53.51 . AC=3;AF=0.036;AN=84;BaseQRankSum=-10.711;DP=1388;Dels=0.00;FS=79.434;HRun=1;HaplotypeScore=0.9436;InbreedingCoeff=-0.0824;MQ=57.41;MQ0=0;MQRankSum=0.359;QD=0.75;ReadPosRankSum=-3.590 GT:AD:DP:GQ:PL 0/0:19,4:23:9.60:0,10,428 0/0:20,2:22:27.08:0,27,324 0/0:23,3:26:22.45:0,22,511 0/0:51,11:62:99:0,99,1152 0/0:37,12:49:2.22:2,0,752 0/0:48,6:54:55:0,55,1074 0/0:35,8:43:51.12:0,51,591 0/0:40,8:48:54.16:0,54,668 0/0:20,8:29:6.47:0,6,356 0/0:31,2:33:33.43:0,33,620 0/0:17,4:21:42.10:0,42,477 0/0:25,6:31:18.52:0,19,515 0/0:12,2:14:18.04:0,18,212 0/1:12,5:17:42.04:42,0,167 0/0:48,24:72:75.60:0,76,1131 0/1:22,6:28:58.36:58,0,478 0/0:19,4:23:2.85:0,0,340 0/0:18,3:21:0.36:0,0,222 0/0:21,10:31:20.71:0,21,562 0/0:47,6:54:52.39:0,52,961 0/0:27,16:43:18.52:0,19,515 0/0:29,8:37:36.54:0,37,707 0/0:63,15:78:84.61:0,85,1268 0/0:26,3:29:33.09:0,33,405 0/0:41,5:46:72.22:0,72,905 0/0:27,8:35:51.13:0,51,585 0/0:18,6:24:7.45:0,7,357 0/0:15,4:19:33.09:0,33,387 0/0:17,5:22:10.36:0,10,326 0/0:17,5:23:27.05:0,27,301 0/0:20,6:26:0.63:8,0,437 0/0:44,3:47:59.48:0,59,881 0/0:37,4:41:41.76:0,42,821 0/0:23,2:25:51.11:0,51,568 0/0:16,7:23:39.07:0,39,451 0/1:21,5:26:25.08:25,0,312 0/0:22,5:28:39.09:0,39,432 0/0:31,1:32:60.17:0,60,700 0/0:14,1:16:21.06:0,21,254 0/0:11,5:16:10.37:0,10,322 0/0:20,5:25:36.06:0,36,413 0/0:18,8:26:4.56:0,5,382 17 38340524 . C T 245.21 . AC=3;AF=0.036;AN=84;BaseQRankSum=-21.918;DP=5512;DS;Dels=0.00;FS=263.886;HRun=1;HaplotypeScore=3.3683;InbreedingCoeff=-0.0428;MQ=56.63;MQ0=0;MQRankSum=-0.219;QD=0.71;ReadPosRankSum=-13.668 GT:AD:DP:GQ:PL 0/0:74,17:92:97.07:0,97,1438 0/0:65,25:91:65.76:0,66,1405 0/0:65,12:77:82.69:0,83,1492 0/0:185,65:250:99:0,106,2898 0/0:188,61:250:99:0,150,3354 0/0:204,46:250:99:0,302,3894 0/0:182,36:220:99:0,249,3936 0/0:206,40:248:99:0,329,4757 0/0:65,14:79:36.57:0,37,1499 0/0:67,24:91:25.70:0,26,1167 0/0:76,16:92:69.72:0,70,1780 0/0:62,12:76:96.63:0,97,1363 0/0:52,12:64:76.59:0,77,1124 0/0:64,19:84:87.49:0,87,1397 0/0:170,68:238:99:0,100,3681 0/0:58,19:77:76.73:0,77,1174 0/0:71,16:87:67.64:0,68,1578 0/1:48,23:72:60.15:60,0,1039 0/1:95,31:127:61.25:61,0,1855 0/0:174,15:189:99:0,304,3423 0/1:98,48:148:99:199,0,1902 0/0:118,16:134:99:0,217,2959 0/0:169,81:250:11.61:0,12,2985 0/0:180,34:214:99:0,110,3212 0/0:215,35:250:99:0,258,4009 0/0:202,32:235:99:0,291,3813 0/0:64,16:81:99:0,103,1394 0/0:63,20:83:2.39:0,2,1332 0/0:81,14:95:99:0,107,1557 0/0:72,22:94:21.05:0,21,1525 0/0:70,27:97:63.62:0,64,1502 0/0:144,14:158:99:0,259,3539 0/0:119,14:133:99:0,228,2757 0/0:74,16:90:99:0,135,1522 0/0:58,25:83:60.87:0,61,1476 0/0:59,15:74:83.39:0,83,1133 0/0:105,32:140:85.22:0,85,2512 0/0:65,16:81:74.93:0,75,1324 0/0:59,17:76:90.82:0,91,1259 0/0:74,11:86:99:0,115,1498 0/0:57,18:75:21.37:0,21,1065 0/0:59,21:81:65.04:0,65,1281 17 38346708 . T C 717.59 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.182;DP=3059;Dels=0.00;FS=0.760;HRun=1;HaplotypeScore=1.7010;InbreedingCoeff=-0.0120;MQ=59.11;MQ0=0;MQRankSum=-1.775;QD=12.59;ReadPosRankSum=-1.129 GT:AD:DP:GQ:PL 0/0:68,0:68:99:0,196,2430 0/0:54,0:54:99:0,150,1884 0/0:52,0:52:99:0,132,1671 0/0:160,0:160:99:0,421,5379 0/0:99,0:100:99:0,262,3355 0/0:107,0:107:99:0,277,3609 0/0:97,0:98:99:0,262,3391 0/0:89,0:90:99:0,211,2745 0/0:50,0:50:99:0,147,1819 0/0:50,0:50:99:0,141,1759 0/0:45,0:45:99:0,126,1582 0/0:71,0:71:99:0,193,2422 0/0:49,0:49:99:0,129,1656 0/1:28,29:57:99:764,0,814 0/0:227,0:227:99:0,566,7181 0/0:50,1:51:99:0,144,1758 0/0:60,0:60:99:0,166,2055 0/0:48,0:48:99:0,126,1591 0/0:63,0:63:99:0,178,2219 0/0:90,0:91:99:0,244,3029 0/0:69,0:70:99:0,187,2333 0/0:46,0:46:99:0,126,1557 0/0:141,0:142:99:0,355,4642 0/0:75,0:75:99:0,199,2592 0/0:107,0:107:99:0,283,3639 0/0:94,0:94:99:0,238,3084 0/0:50,0:50:99:0,135,1668 0/0:47,0:47:99:0,123,1547 0/0:47,0:47:99:0,132,1646 0/0:62,0:62:99:0,177,2152 0/0:51,0:51:99:0,138,1715 0/0:86,0:86:99:0,220,2765 0/0:61,0:61:99:0,153,1938 0/0:54,0:54:99:0,153,1916 0/0:58,0:58:99:0,156,1944 0/0:72,0:72:99:0,199,2487 0/0:70,0:70:99:0,190,2365 0/0:55,0:55:99:0,159,1947 0/0:43,0:43:99:0,123,1523 0/0:56,0:56:99:0,156,1948 0/0:65,0:65:99:0,184,2251 0/0:57,0:57:99:0,166,2053 17 38497663 . C A 36.41 . AC=8;AF=0.103;AN=78;BaseQRankSum=-5.109;DP=222;Dels=0.00;FS=52.236;HRun=2;HaplotypeScore=0.2751;InbreedingCoeff=0.0939;MQ=58.12;MQ0=0;MQRankSum=0.597;QD=1.10;ReadPosRankSum=-5.473 GT:AD:DP:GQ:PL 0/0:2,2:4:6.02:0,6,72 0/0:1,4:5:3.01:0,3,34 0/0:5,2:7:15.02:0,15,170 0/0:3,0:3:6.02:0,6,80 0/1:0,1:1:1.76:26,3,0 0/0:1,0:1:3:0,3,25 0/0:3,0:3:6.02:0,6,77 ./. 0/0:2,2:4:3.01:0,3,37 0/0:1,1:2:3.01:0,3,38 0/0:4,1:5:6.02:0,6,71 0/0:3,2:5:9.03:0,9,113 ./. 0/1:2,2:4:21.57:22,0,62 0/0:11,3:15:24.05:0,24,264 0/1:8,2:10:9.53:10,0,197 0/0:3,3:6:6.01:0,6,66 0/0:2,3:5:6.02:0,6,68 0/0:7,1:8:12.03:0,12,135 0/0:12,2:14:24.01:0,24,237 0/0:8,2:10:18.06:0,18,224 0/0:4,0:5:9:0,9,89 0/1:4,2:6:16.50:17,0,140 0/0:1,0:1:3.01:0,3,40 0/0:3,0:3:6.02:0,6,81 ./. 0/1:3,4:7:17.59:18,0,100 0/0:2,1:3:3.01:0,3,37 0/0:1,2:3:2.37:0,2,8 0/0:8,2:10:17.71:0,18,184 0/0:2,2:4:3.01:0,3,32 0/0:10,6:17:24.07:0,24,280 0/0:5,0:5:12.04:0,12,149 0/1:1,3:4:1.80:21,0,2 0/0:2,1:3:6.02:0,6,74 0/0:7,3:10:15.04:0,15,174 0/0:3,2:5:9.03:0,9,110 0/0:5,0:5:15.04:0,15,176 0/0:1,2:3:3.01:0,3,39 1/1:0,1:1:3.01:31,3,0 0/0:3,0:3:9:0,9,94 0/0:6,3:9:12.03:0,12,139 17 38610226 . T TG 554.39 . 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C G 974.68 . 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T C 9805.28 . 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G GGGTTT 37.05 . 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T G 48.21 . AC=1;AF=0.012;AN=84;BaseQRankSum=-25.229;DP=6805;DS;Dels=0.00;FS=286.759;HRun=2;HaplotypeScore=21.6163;InbreedingCoeff=-0.0120;MQ=59.88;MQ0=0;MQRankSum=-2.174;QD=0.39;ReadPosRankSum=-5.252 GT:AD:DP:GQ:PL 0/0:96,50:146:99:0,125,2864 0/0:100,14:114:99:0,271,3103 0/0:83,41:124:99:0,174,2697 0/0:150,37:250:99:0,354,4378 0/0:148,33:250:99:0,367,4258 0/0:161,41:249:99:0,380,4560 0/0:175,41:249:99:0,439,4820 0/0:168,13:182:99:0,439,4923 0/0:86,42:129:90.24:0,90,2479 0/0:83,43:126:99:0,134,2619 0/0:97,6:104:99:0,246,2987 0/0:79,40:119:68.05:0,68,2383 0/0:69,37:106:99:0,156,2224 0/0:97,43:140:99:0,228,3051 0/0:175,57:243:99:0,317,5359 0/0:76,8:84:99:0,208,2388 0/0:118,16:135:99:0,322,3612 0/0:82,38:123:99:0,131,2388 0/0:151,12:170:99:0,418,4896 0/0:180,63:250:99:0,468,5475 0/0:142,35:212:99:0,302,4119 0/0:107,38:146:99:0,130,3046 0/0:153,37:250:99:0,406,4609 0/0:178,26:211:99:0,426,5001 0/0:168,51:250:99:0,418,4725 0/0:168,47:248:99:0,381,4459 0/0:84,34:118:99:0,138,2540 0/0:115,13:128:99:0,288,3602 0/0:98,25:124:99:0,226,3110 0/0:81,43:124:99:0,124,2537 0/1:79,46:125:94.42:94,0,2276 0/0:210,15:227:99:0,574,6604 0/0:109,43:152:99:0,238,3346 0/0:96,47:143:99:0,136,2963 0/0:90,13:104:99:0,231,2841 0/0:92,49:142:99:0,189,2721 0/0:117,19:144:99:0,319,3659 0/0:95,37:132:99:0,188,3048 0/0:104,39:143:50.69:0,51,3160 0/0:92,40:133:99:0,132,2811 0/0:81,43:124:99:0,148,2347 0/0:90,39:129:99:0,212,2879 17 38858134 . CA C 40368.25 . 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C T 700.23 . 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C T 14497.82 . AC=38;AF=0.452;AN=84;BaseQRankSum=-14.751;DP=1280;Dels=0.00;FS=13.271;HRun=0;HaplotypeScore=0.5324;InbreedingCoeff=0.1253;MQ=59.07;MQ0=0;MQRankSum=0.880;QD=18.03;ReadPosRankSum=2.446 GT:AD:DP:GQ:PL 0/0:34,0:34:90.28:0,90,1156 0/0:21,0:21:51.17:0,51,677 0/1:16,7:23:99:179,0,483 0/0:61,0:61:99:0,160,2189 0/0:50,0:50:99:0,132,1814 0/1:23,21:44:99:588,0,648 0/0:44,0:44:99:0,108,1489 1/1:0,23:23:63.19:798,63,0 0/0:22,0:22:57.18:0,57,743 0/0:31,0:31:81.26:0,81,1060 0/0:19,0:19:57.18:0,57,726 1/1:0,27:27:72.22:898,72,0 0/1:12,12:24:99:373,0,354 1/1:0,14:14:36.12:464,36,0 0/1:49,45:94:99:1147,0,1411 0/1:15,8:23:99:221,0,448 0/1:12,14:26:99:372,0,381 0/1:18,13:31:99:374,0,530 0/1:18,14:32:99:425,0,498 0/1:19,18:37:99:541,0,449 0/1:18,16:35:99:422,0,564 0/1:11,17:28:99:475,0,285 0/0:45,0:45:99:0,123,1692 1/1:0,24:24:54.17:705,54,0 1/1:0,22:22:57.18:729,57,0 0/1:16,15:31:99:454,0,519 0/1:7,6:13:99:156,0,185 0/0:30,0:30:90.28:0,90,1114 0/1:13,11:24:99:322,0,367 0/1:18,8:26:99:169,0,514 1/1:0,13:13:39.12:474,39,0 0/1:20,12:32:99:339,0,556 0/0:28,0:28:69.22:0,69,893 1/1:0,23:23:66.20:811,66,0 1/1:0,20:20:51.16:643,51,0 1/1:0,35:35:96.30:1192,96,0 0/0:37,0:38:99:0,102,1299 0/1:23,12:35:99:344,0,692 0/0:27,0:27:78.24:0,78,984 0/1:12,12:24:99:324,0,343 1/1:2,18:20:6.39:560,6,0 0/0:26,0:26:75.23:0,75,948 17 38950239 . C T 5456.70 . 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A G 6322.34 . 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T C 75124.69 . 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C T 740.87 . 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A G 43606.01 . 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G A 1199.02 . 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T C 101127.98 . 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A C 16.07 . 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C A 3339.85 . 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A G 3219.64 . 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G A 17685.75 . 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G A 4.95 . 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C A 147.01 . 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C A 821.95 . 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G A 466.85 . 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T C 66341.32 . 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C T 6544.52 . 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C T 28927.57 . 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C T 24071.12 . 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G A 4452.01 . 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G A 727.81 . 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T G 20433.16 . 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G A 289563 . 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T C 14917.90 . 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G A 3566.86 . 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A C 214.03 . AC=5;AF=0.060;AN=84;BaseQRankSum=-27.975;DP=3933;DS;Dels=0.00;FS=1444.114;HRun=2;HaplotypeScore=2.9763;InbreedingCoeff=-0.1013;MQ=58.97;MQ0=0;MQRankSum=-0.596;QD=0.33;ReadPosRankSum=-14.540 GT:AD:DP:GQ:PL 0/0:50,23:73:88.88:0,89,1716 0/0:58,15:73:63.14:0,63,1851 0/1:37,14:51:84.27:84,0,1211 0/0:114,59:173:63.63:0,64,3648 0/0:111,34:145:99:0,141,3706 0/1:74,45:119:33.94:34,0,2280 0/0:62,39:101:71.79:0,72,1899 0/0:81,46:127:76.79:0,77,2677 0/0:55,18:73:1.08:0,1,1738 0/0:45,20:65:28.99:0,29,1459 0/0:53,17:70:67.69:0,68,1689 0/0:47,24:71:62.62:0,63,1530 0/0:36,16:52:1.20:5,0,1093 0/0:43,16:59:75.11:0,75,1475 0/1:162,82:244:99:145,0,4875 0/0:60,19:79:2.65:1,0,1898 0/0:66,22:88:99:0,139,2284 0/0:73,22:95:72.87:0,73,2327 0/0:91,22:113:99:0,197,2992 0/0:90,38:129:99:0,121,2950 0/0:98,19:117:99:0,158,3205 0/0:49,26:75:63.60:0,64,1586 0/1:105,54:159:12.47:12,0,3381 0/0:86,30:116:99:0,147,2848 0/0:78,43:121:99:0,127,2575 0/0:45,40:85:28.72:0,29,1393 0/0:52,18:70:65.14:0,65,1626 0/0:53,19:72:61.44:0,61,1705 0/0:41,21:62:23.86:0,24,1333 0/0:55,20:75:62.84:0,63,1802 0/0:49,11:60:99:0,144,1732 0/0:94,50:144:97.82:0,98,3028 0/0:58,30:88:76.87:0,77,1923 0/1:56,27:83:28.25:28,0,1756 0/0:41,18:59:18.94:0,19,1336 0/0:62,21:83:0.80:7,0,1922 0/0:64,22:86:54.65:0,55,2100 0/0:59,24:83:17.93:0,18,1856 0/0:61,23:84:9.66:0,10,1935 0/0:54,16:71:10.57:0,11,1641 0/0:52,15:67:90.06:0,90,1699 0/0:51,12:63:85.45:0,85,1642 17 39775870 . C T 3107.62 . 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G A 295642.54 . AC=76;AF=0.905;AN=84;BaseQRankSum=-41.601;DP=10315;DS;Dels=0.00;FS=21.391;HRun=0;HaplotypeScore=4.5916;InbreedingCoeff=0.1711;MQ=58.96;MQ0=0;MQRankSum=1.810;QD=29.37;ReadPosRankSum=5.270 GT:AD:DP:GQ:PL 1/1:0,245:246:99:7847,662,0 1/1:0,241:241:99:7764,647,0 1/1:0,245:247:99:7576,632,0 1/1:0,250:250:99:8203,701,0 1/1:0,247:247:99:8317,704,0 1/1:1,246:247:99:8599,672,0 1/1:0,250:250:99:8441,707,0 0/1:139,111:250:99:2954,0,4294 1/1:0,244:244:99:7813,662,0 1/1:0,245:245:99:7583,641,0 1/1:1,241:243:99:7778,629,0 0/1:121,123:244:99:3163,0,3541 1/1:0,223:223:99:7199,602,0 0/1:115,131:247:99:3403,0,3318 1/1:0,250:250:99:8150,710,0 1/1:0,245:246:99:7982,677,0 1/1:0,246:246:99:7850,659,0 1/1:0,237:237:99:7561,635,0 1/1:0,249:249:99:7938,674,0 1/1:0,250:250:99:8231,698,0 1/1:0,249:250:99:7998,680,0 0/1:134,104:238:99:2652,0,4064 1/1:1,249:250:99:8275,662,0 0/1:141,109:250:99:2909,0,4565 1/1:0,250:250:99:7999,668,0 0/0:250,0:250:99:0,698,9260 1/1:1,247:248:99:7813,624,0 1/1:0,249:249:99:7869,662,0 1/1:0,234:235:99:7461,632,0 1/1:1,240:241:99:7807,656,0 1/1:1,249:250:99:8170,657,0 1/1:0,245:245:99:7856,665,0 1/1:0,239:239:99:7697,647,0 1/1:0,248:249:99:8041,674,0 1/1:2,244:246:99:7750,577,0 1/1:0,250:250:99:8178,689,0 1/1:0,250:250:99:7653,644,0 0/1:112,131:243:99:3549,0,3268 1/1:0,244:244:99:7897,665,0 1/1:1,241:242:99:7821,656,0 1/1:0,243:243:99:7836,662,0 1/1:1,248:249:99:8056,642,0 17 39883350 . G A 3672.27 . 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T TG 239.85 . 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A G 749.05 . 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A AG 4897.96 . 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T G 4271.34 . 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C G 24.09 . 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C T 365.26 . 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C T 1562.83 . 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T C 1483.05 . 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G A 834.68 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.841;DP=1524;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8427;InbreedingCoeff=-0.0244;MQ=59.13;MQ0=1;MQRankSum=2.067;QD=14.91;ReadPosRankSum=0.036 GT:AD:DP:GQ:PL 0/0:20,0:20:60.19:0,60,754 0/0:20,0:20:60.19:0,60,748 0/0:30,0:30:87.27:0,87,1097 0/0:67,0:67:99:0,178,2377 0/0:52,1:53:99:0,107,1889 0/0:41,0:41:99:0,105,1423 0/0:35,0:35:84.28:0,84,1179 0/0:48,0:48:99:0,123,1650 0/0:35,0:35:96.29:0,96,1224 0/0:36,0:36:99:0,99,1266 0/0:31,0:31:84.27:0,84,1090 0/0:28,0:28:75.24:0,75,966 0/0:22,0:22:60.19:0,60,756 0/0:27,0:27:72.22:0,72,914 0/0:89,0:90:99:0,226,2905 0/0:35,0:35:93.27:0,93,1167 0/0:31,0:31:84.27:0,84,1075 0/1:13,17:30:99:453,0,401 0/0:50,0:50:99:0,135,1694 0/0:50,0:50:99:0,141,1786 0/0:60,0:61:99:0,153,1967 0/0:26,0:26:72.21:0,72,909 0/0:63,0:63:99:0,172,2338 0/0:25,0:25:60.19:0,60,826 0/0:36,0:36:96.32:0,96,1324 0/0:32,0:32:75.24:0,75,1017 0/0:30,0:30:81.26:0,81,1035 0/0:30,0:30:78.24:0,78,1001 0/1:10,16:26:99:445,0,307 0/0:19,0:19:51.16:0,51,664 0/0:27,0:27:78.25:0,78,1007 0/0:43,0:43:99:0,105,1379 0/0:35,0:35:90.28:0,90,1151 0/0:29,0:29:84.27:0,84,1065 0/0:17,0:17:48.15:0,48,612 0/0:29,0:30:87.28:0,87,1104 0/0:56,0:57:99:0,150,1919 0/0:40,0:40:99:0,102,1274 0/0:25,0:25:69.22:0,69,889 0/0:43,0:43:99:0,114,1452 0/0:23,0:23:69.20:0,69,859 0/0:28,0:28:78.22:0,78,965 17 40266392 . A G 7209.75 . AC=2;AF=0.024;AN=84;BaseQRankSum=16.331;DP=9156;DS;Dels=0.00;FS=4.897;HRun=0;HaplotypeScore=10.6500;InbreedingCoeff=-0.0244;MQ=59.39;MQ0=1;MQRankSum=-0.232;QD=14.80;ReadPosRankSum=-2.007 GT:AD:DP:GQ:PL 0/0:226,0:227:99:0,644,7812 0/0:217,0:217:99:0,602,7310 0/0:174,0:174:99:0,496,6011 0/0:247,2:250:99:0,677,8309 0/0:250,0:250:99:0,701,8671 0/1:122,122:245:99:3684,0,3726 0/0:247,0:247:99:0,701,8731 0/1:125,116:242:99:3525,0,3762 0/0:212,0:213:99:0,599,7304 0/0:214,0:214:99:0,608,7376 0/0:199,0:201:99:0,563,6840 0/0:171,0:172:99:0,475,5795 0/0:133,0:133:99:0,379,4598 0/0:208,1:209:99:0,562,7151 0/0:249,0:250:99:0,704,8402 0/0:207,0:207:99:0,584,7042 0/0:223,0:223:99:0,626,7621 0/0:199,0:199:99:0,563,6874 0/0:243,0:246:99:0,677,8219 0/0:248,0:250:99:0,710,8481 0/0:240,0:240:99:0,662,8038 0/0:249,0:249:99:0,716,8653 0/0:249,1:250:99:0,704,8661 0/0:246,0:246:99:0,683,8661 0/0:245,0:245:99:0,677,8467 0/0:246,1:248:99:0,683,8522 0/0:137,1:139:99:0,403,4892 0/0:208,0:208:99:0,572,6979 0/0:222,0:222:99:0,626,7572 0/0:191,0:191:99:0,554,6682 0/0:188,1:189:99:0,545,6590 0/0:250,0:250:99:0,689,8346 0/0:248,0:250:99:0,698,8442 0/0:195,1:196:99:0,557,6775 0/0:190,0:191:99:0,524,6398 0/0:187,1:188:99:0,524,6394 0/0:244,0:245:99:0,674,8194 0/0:207,1:208:99:0,593,7117 0/0:215,1:217:99:0,623,7533 0/0:223,1:225:99:0,626,7599 0/0:183,1:184:99:0,490,6183 0/0:204,0:206:99:0,581,7119 17 40282512 . A C 10.31 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.548;DP=1149;Dels=0.00;FS=61.424;HRun=3;HaplotypeScore=1.0542;InbreedingCoeff=-0.0411;MQ=57.99;MQ0=0;MQRankSum=-0.405;QD=0.20;ReadPosRankSum=-4.738 GT:AD:DP:GQ:PL 0/0:16,6:22:45.03:0,45,462 0/0:12,4:16:33.08:0,33,375 0/0:16,6:22:39.10:0,39,443 0/0:40,21:62:93.22:0,93,1054 0/0:23,16:39:63.17:0,63,734 0/0:27,11:38:54.09:0,54,579 0/0:13,13:26:33.09:0,33,385 0/0:25,12:39:14.12:0,14,549 0/0:18,5:24:42.09:0,42,473 0/0:8,5:13:24.07:0,24,281 0/0:18,8:27:42.09:0,42,481 0/0:15,11:26:16.44:0,16,431 0/0:12,9:22:0.20:13,0,334 0/0:14,11:25:13.37:0,13,367 0/0:42,26:69:76.76:0,77,1132 0/0:13,9:22:33.07:0,33,352 0/0:12,9:21:27.04:0,27,281 0/0:14,6:20:27.04:0,27,279 0/1:12,11:23:16.21:16,0,287 0/0:29,6:36:69.12:0,69,756 0/0:18,12:30:12.42:0,12,400 0/0:20,9:29:45.06:0,45,469 0/0:41,21:62:73.39:0,73,1145 0/0:21,8:29:45.11:0,45,508 0/0:16,14:30:45.10:0,45,498 0/0:22,6:28:60.12:0,60,654 0/0:6,6:12:15.02:0,15,160 0/0:8,9:17:18.05:0,18,203 0/0:5,6:12:15:0,15,150 0/0:11,8:19:8.37:0,8,276 0/0:18,7:25:42.05:0,42,437 0/0:26,2:28:66.11:0,66,714 0/0:19,4:24:54.11:0,54,582 0/0:16,6:22:36.11:0,36,423 0/0:19,9:29:31.42:0,31,568 0/0:10,8:20:21.05:0,21,234 0/1:16,12:28:50.51:51,0,437 0/0:17,10:27:42.06:0,42,456 0/0:13,4:17:39.08:0,39,424 0/0:19,9:28:45.10:0,45,495 0/0:11,1:12:30.08:0,30,338 0/0:19,9:29:31.42:0,31,571 17 40341909 . G A 410.61 . AC=6;AF=0.071;AN=84;BaseQRankSum=0.730;DP=259;Dels=0.00;FS=0.956;HRun=0;HaplotypeScore=0.0870;InbreedingCoeff=-0.1116;MQ=58.71;MQ0=0;MQRankSum=-0.289;QD=12.44;ReadPosRankSum=0.927 GT:AD:DP:GQ:PL 0/0:5,0:5:12.03:0,12,132 0/1:1,1:2:30.96:31,0,33 0/1:5,5:10:99:108,0,145 0/0:10,0:10:24.07:0,24,316 0/0:9,0:9:24.08:0,24,313 0/0:3,0:3:9.03:0,9,117 0/0:3,0:3:6.02:0,6,83 0/0:7,0:7:21.06:0,21,254 0/0:4,0:4:6.02:0,6,74 0/0:5,0:5:12.04:0,12,152 0/0:9,0:9:24.05:0,24,283 0/1:4,6:10:99:190,0,100 0/0:4,0:4:12.03:0,12,141 0/1:2,1:3:27.96:28,0,58 0/0:22,0:22:51.14:0,51,620 0/0:7,0:7:18.05:0,18,217 0/0:9,0:9:27.07:0,27,309 0/0:9,0:9:27.07:0,27,302 0/0:5,0:5:9.03:0,9,128 0/0:12,0:12:33.09:0,33,402 0/0:6,0:6:15.04:0,15,183 0/1:2,2:4:53.90:62,0,54 0/0:7,0:7:15.05:0,15,199 0/0:2,0:2:6.01:0,6,64 0/0:7,0:7:18.06:0,18,243 0/0:4,0:4:12.04:0,12,156 0/0:3,0:3:9.01:0,9,97 0/0:3,0:3:9.02:0,9,101 0/0:4,0:4:12.04:0,12,145 0/0:7,0:7:18.05:0,18,215 0/0:10,0:10:27.07:0,27,306 0/0:7,0:7:21.06:0,21,237 0/0:7,0:7:18.04:0,18,192 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,39 0/0:6,0:6:15.03:0,15,164 0/0:7,0:7:18.05:0,18,212 0/1:1,3:4:25.76:96,0,26 0/0:3,0:3:6.02:0,6,77 0/0:6,0:6:18.04:0,18,200 0/0:8,0:8:21.06:0,21,261 0/0:4,0:4:12.03:0,12,133 17 40459737 . C T 8596.39 . AC=14;AF=0.167;AN=84;BaseQRankSum=-11.753;DP=2150;Dels=0.00;FS=6.677;HRun=1;HaplotypeScore=1.3323;InbreedingCoeff=-0.2000;MQ=58.38;MQ0=0;MQRankSum=1.289;QD=12.26;ReadPosRankSum=-1.235 GT:AD:DP:GQ:PL 0/1:17,18:35:99:488,0,499 0/0:43,0:43:99:0,114,1415 0/0:46,0:46:99:0,129,1600 0/0:92,0:92:99:0,223,3007 0/0:65,0:65:99:0,172,2264 0/0:58,0:58:99:0,135,1831 0/0:60,0:60:99:0,147,1968 0/0:50,0:50:99:0,132,1762 0/0:45,0:45:99:0,117,1489 0/0:29,0:29:78.24:0,78,978 0/0:44,0:44:99:0,111,1364 0/0:38,0:38:99:0,102,1306 0/0:36,0:36:90.28:0,90,1162 0/0:45,0:45:99:0,129,1611 0/0:149,0:149:99:0,388,4905 0/1:24,19:43:99:492,0,659 0/0:30,0:30:81.25:0,81,1010 0/1:21,19:40:99:555,0,541 0/0:64,0:64:99:0,166,2094 0/0:83,0:83:99:0,205,2586 0/1:37,31:68:99:813,0,1033 0/0:45,0:45:99:0,126,1561 0/1:42,42:84:99:1019,0,1219 0/0:45,0:45:99:0,126,1678 0/1:44,28:72:99:750,0,1334 0/0:54,0:54:99:0,138,1827 0/0:27,0:27:75.24:0,75,943 0/0:38,0:38:99:0,105,1315 0/0:36,0:36:99:0,99,1247 0/0:46,1:48:75.21:0,75,1337 0/1:23,27:50:99:734,0,657 0/1:42,36:78:99:844,0,1135 0/0:42,0:42:99:0,117,1442 0/1:19,12:31:99:297,0,605 0/1:28,23:51:99:627,0,848 0/1:20,19:39:99:482,0,585 0/0:60,0:60:99:0,169,2102 0/0:46,0:46:99:0,132,1634 0/1:21,17:38:99:436,0,686 0/1:20,19:39:99:553,0,545 0/0:31,0:31:84.26:0,84,1049 0/1:16,17:33:99:508,0,437 17 40486066 . T C 43.95 . AC=5;AF=0.060;AN=84;BaseQRankSum=-14.134;DP=1862;Dels=0.00;FS=292.701;HRun=2;HaplotypeScore=0.9049;InbreedingCoeff=-0.0986;MQ=58.97;MQ0=0;MQRankSum=0.211;QD=0.24;ReadPosRankSum=-8.195 GT:AD:DP:GQ:PL 0/0:18,11:29:25.42:0,25,521 0/0:17,15:32:18.52:0,19,506 0/0:20,15:35:2.16:2,0,581 0/0:49,54:103:10.30:0,10,1266 0/1:32,39:71:13.33:13,0,884 0/0:38,23:61:93.29:0,93,1129 0/0:29,35:64:8.58:0,9,933 0/0:39,18:57:81.23:0,81,975 0/0:17,16:33:0.53:9,0,509 0/0:12,10:22:33.10:0,33,387 0/0:23,17:40:54.13:0,54,617 0/0:21,9:30:57.17:0,57,684 0/0:16,11:27:45.13:0,45,520 0/0:24,11:35:63.15:0,63,721 0/0:60,42:102:99:0,119,1715 0/1:17,10:27:10.04:10,0,476 0/0:31,10:41:58.91:0,59,1015 0/0:20,14:34:13.79:0,14,505 0/0:39,19:58:15.44:0,15,1111 0/0:28,21:49:14.94:0,15,689 0/0:27,18:46:44.79:0,45,849 0/0:22,14:36:29.44:0,29,576 0/0:51,42:93:90.60:0,91,1285 0/0:34,29:63:68.44:0,68,998 0/0:39,24:63:30.21:0,30,1073 0/0:44,27:72:82.61:0,83,1217 0/0:11,6:17:30.09:0,30,356 0/0:21,17:38:41.49:0,41,680 0/0:23,9:32:58.39:0,58,658 0/0:19,13:32:25.61:0,26,593 0/0:15,2:17:10.77:0,11,440 0/0:42,13:55:20.39:0,20,783 0/0:24,13:37:51.15:0,51,597 0/0:15,14:29:6.46:0,6,344 0/1:14,11:25:28.25:28,0,289 0/0:20,13:33:48.14:0,48,568 0/0:24,14:38:72.21:0,72,848 0/0:19,16:35:2.54:1,0,573 0/1:21,18:39:26.65:27,0,528 0/1:15,10:25:53.31:53,0,380 0/0:16,19:35:15.51:0,16,466 0/0:28,23:51:39.58:0,40,750 17 40498635 . C T 3816.71 . 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T G 158.12 . 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C T 5484.88 . 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T C 119962.54 . 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G A 1633.22 . 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A G 17355.39 . 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G A 305.32 . 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G A 40560.25 . 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A G 52891.61 . 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C T 5523.88 . 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T TCGTCCC 906.48 . 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A C 23480.37 . 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C A 7204.50 . 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C T 1080.91 . AC=30;AF=0.536;AN=56;BaseQRankSum=-1.772;DP=74;Dels=0.00;FS=1.070;HRun=1;HaplotypeScore=0.0707;InbreedingCoeff=0.1549;MQ=57.30;MQ0=0;MQRankSum=-0.657;QD=18.64;ReadPosRankSum=1.794 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,72 0/1:1,1:2:30.96:31,0,32 0/1:1,0:1:1.76:0,3,31 1/1:0,1:1:3.01:36,3,0 1/1:0,1:1:3.01:38,3,0 ./. ./. ./. ./. 1/1:0,3:3:9.03:107,9,0 0/0:1,0:1:3.01:0,3,39 0/1:1,1:2:30.11:30,0,33 ./. 0/0:3,0:3:9.03:0,9,112 0/1:4,1:5:21.08:21,0,130 1/1:0,5:5:15.05:180,15,0 1/1:0,1:1:3.01:36,3,0 0/0:1,0:1:3.01:0,3,38 0/0:2,0:2:6.02:0,6,69 0/1:5,2:7:45.80:46,0,164 1/1:0,2:2:3.01:36,3,0 1/1:0,1:1:3.01:32,3,0 ./. ./. ./. ./. 0/1:1,1:2:30.96:31,0,34 ./. 1/1:0,4:4:9.03:115,9,0 ./. 0/1:3,3:6:88.49:88,0,97 0/0:1,0:1:3.01:0,3,37 1/1:0,5:5:15.05:179,15,0 ./. ./. 1/1:0,1:1:3.01:37,3,0 0/0:1,0:1:3.01:0,3,38 0/0:3,0:3:9.02:0,9,95 ./. 0/1:3,1:4:21.40:21,0,96 0/0:2,0:2:6.01:0,6,68 1/1:0,5:5:12.04:152,12,0 17 40958703 . T TG 157.57 . 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T G 132.94 . 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T C 1167.72 . 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C T 166.11 . 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C T 1420.25 . 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G A 529.11 . 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C G 3133.86 . 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A G 8544.90 . 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G C 65.23 . AC=8;AF=0.190;AN=42;BaseQRankSum=-2.590;DP=73;Dels=0.00;FS=12.128;HRun=1;HaplotypeScore=0.0870;InbreedingCoeff=0.1834;MQ=57.69;MQ0=0;MQRankSum=-1.592;QD=9.32;ReadPosRankSum=-1.092 GT:AD:DP:GQ:PL ./. 0/0:1,1:2:3.01:0,3,38 ./. 0/0:1,2:3:3.01:0,3,39 ./. ./. ./. ./. ./. ./. 0/0:2,2:4:6.02:0,6,76 0/1:0,1:1:1.76:29,3,0 0/1:1,2:3:24.57:25,0,33 0/0:1,0:1:3.01:0,3,39 0/0:3,4:7:9.03:0,9,112 0/0:2,2:4:3.01:0,3,39 0/0:2,3:5:6.01:0,6,66 0/0:1,1:2:3.01:0,3,39 0/0:2,0:2:3.01:0,3,39 0/0:1,1:2:3.01:0,3,36 0/0:1,1:2:3.01:0,3,39 ./. ./. ./. 0/0:2,0:2:3.01:0,3,37 0/0:1,0:1:3.01:0,3,32 1/1:0,1:1:3:29,3,0 ./. 0/0:1,0:1:2.99:0,3,23 ./. ./. 0/0:3,2:5:3.01:0,3,35 ./. ./. ./. ./. ./. ./. 1/1:0,1:1:3.01:31,3,0 ./. 0/0:1,0:1:3.01:0,3,38 1/1:0,1:1:3.01:32,3,0 17 41879074 . T C 6395.69 . 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C T 1116.82 . AC=6;AF=0.071;AN=84;BaseQRankSum=-4.309;DP=901;Dels=0.00;FS=4.195;HRun=0;HaplotypeScore=0.7926;InbreedingCoeff=-0.0770;MQ=58.52;MQ0=0;MQRankSum=0.971;QD=11.76;ReadPosRankSum=-0.707 GT:AD:DP:GQ:PL 0/0:20,0:20:54.16:0,54,642 0/1:12,9:21:99:240,0,313 0/1:14,8:22:99:218,0,338 0/0:39,0:39:99:0,114,1412 0/0:46,0:46:99:0,123,1561 0/0:27,0:27:69.21:0,69,871 0/0:18,0:18:48.12:0,48,576 0/0:27,0:27:69.21:0,69,883 0/0:14,0:14:42.13:0,42,506 0/0:13,0:13:39.10:0,39,461 0/0:15,0:15:45.11:0,45,533 0/0:17,0:17:45.11:0,45,509 0/0:17,0:17:48.14:0,48,585 0/0:24,0:24:69.20:0,69,835 0/0:42,0:43:99:0,108,1261 0/0:19,0:19:54.17:0,54,663 0/0:20,0:20:54.14:0,54,644 0/0:15,0:15:45.10:0,45,514 0/0:25,0:25:72.20:0,72,838 0/0:45,0:45:99:0,123,1479 0/0:27,0:27:66.17:0,66,782 0/0:17,0:17:36.09:0,36,410 0/0:37,0:37:90.28:0,90,1168 0/0:23,0:23:69.18:0,69,844 0/0:32,0:32:75.24:0,75,962 0/0:21,0:21:54.14:0,54,672 0/1:6,8:14:99:199,0,142 0/0:14,0:14:39.12:0,39,469 0/1:6,6:12:99:174,0,139 0/0:8,0:8:24.07:0,24,298 0/0:12,0:12:36.10:0,36,444 0/0:32,0:33:90.24:0,90,1068 0/0:17,0:19:48.15:0,48,594 0/1:6,8:14:99:223,0,118 0/0:13,0:13:39.11:0,39,464 0/1:6,6:12:99:168,0,182 0/0:23,0:26:60.17:0,60,708 0/0:15,0:15:45.13:0,45,534 0/0:14,0:15:36.10:0,36,429 0/0:16,0:16:45.13:0,45,530 0/0:16,0:16:42.09:0,42,487 0/0:18,0:18:51.13:0,51,598 17 42155743 . G A 193.66 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.450;DP=925;Dels=0.00;FS=4.905;HRun=0;HaplotypeScore=0.7966;InbreedingCoeff=-0.0121;MQ=58.39;MQ0=0;MQRankSum=0.964;QD=10.19;ReadPosRankSum=1.227 GT:AD:DP:GQ:PL 0/0:21,0:21:57.14:0,57,623 0/0:20,0:20:57.16:0,57,663 0/0:22,0:22:63.18:0,63,734 0/0:40,0:40:99:0,111,1299 0/0:49,0:49:99:0,135,1648 0/0:29,0:29:78.22:0,78,934 0/0:18,0:18:48.12:0,48,563 0/0:29,0:29:72.20:0,72,883 0/0:15,0:15:45.11:0,45,490 0/0:13,0:13:36.08:0,36,384 0/0:15,0:15:45.10:0,45,496 0/0:18,0:18:51.12:0,51,545 0/0:17,0:17:51.13:0,51,555 0/0:25,0:25:75.19:0,75,819 0/0:47,0:47:99:0,126,1362 0/0:20,0:20:60.16:0,60,656 0/0:19,0:19:48.12:0,48,532 0/0:15,0:15:45.11:0,45,483 0/0:26,0:26:75.18:0,75,813 0/0:47,0:47:99:0,135,1487 0/0:27,0:27:72.17:0,72,772 0/0:16,0:16:45.11:0,45,484 0/0:36,0:36:99:0,99,1184 0/0:25,0:25:72.20:0,72,852 0/0:30,0:30:78.23:0,78,963 0/0:21,0:21:57.17:0,57,689 0/0:14,0:14:39.10:0,39,442 0/0:14,0:14:42.11:0,42,452 0/0:12,0:12:33.09:0,33,391 0/0:8,0:8:24.06:0,24,255 0/0:14,0:14:42.12:0,42,475 0/0:32,0:32:87.21:0,87,958 0/1:11,8:19:99:240,0,230 0/0:15,0:15:42.12:0,42,502 0/0:15,0:15:42.10:0,42,445 0/0:12,0:12:36.10:0,36,421 0/0:27,0:27:81.20:0,81,874 0/0:15,0:15:45.12:0,45,490 0/0:16,0:16:48.12:0,48,516 0/0:16,0:16:42.10:0,42,453 0/0:17,0:17:48.11:0,48,523 0/0:19,0:19:57.15:0,57,622 17 42164093 . C G 22.52 . AC=3;AF=0.037;AN=82;BaseQRankSum=-3.210;DP=357;Dels=0.00;FS=48.921;HRun=3;HaplotypeScore=0.3228;InbreedingCoeff=-0.0664;MQ=58.53;MQ0=0;MQRankSum=-0.591;QD=1.25;ReadPosRankSum=-2.131 GT:AD:DP:GQ:PL 0/0:6,1:7:18.04:0,18,212 0/0:3,0:3:9.02:0,9,99 ./. 0/0:20,2:22:20.74:0,21,660 0/0:22,0:22:63.19:0,63,828 0/0:8,1:9:18.06:0,18,243 0/0:10,2:12:24.08:0,24,323 0/0:9,3:12:27.09:0,27,364 0/0:7,2:9:18.04:0,18,213 0/0:5,1:6:12.03:0,12,142 0/0:4,1:5:12.03:0,12,136 0/0:2,1:3:6.02:0,6,72 0/0:2,0:2:3.01:0,3,39 0/0:9,2:11:27.08:0,27,328 0/0:15,1:17:39.12:0,39,484 0/0:5,1:6:15.05:0,15,192 0/0:6,1:7:18.05:0,18,209 0/0:3,0:4:6.02:0,6,77 0/0:14,3:17:10.45:0,10,389 0/0:13,3:16:30.09:0,30,369 0/0:10,1:11:24.08:0,24,303 0/0:4,1:5:12.04:0,12,148 0/0:14,3:17:39.12:0,39,522 0/0:3,1:4:6:0,6,66 0/0:7,1:8:18.06:0,18,244 0/0:6,1:7:12.04:0,12,167 0/0:4,0:4:12.03:0,12,141 0/0:9,1:10:18.06:0,18,226 0/0:8,1:9:21.07:0,21,264 0/0:2,2:4:6.02:0,6,67 0/0:4,0:4:12.04:0,12,144 0/0:12,2:14:24.08:0,24,305 0/0:12,4:16:30.05:0,30,344 0/1:1,2:3:27.42:27,0,33 0/1:2,2:4:28.78:52,0,29 0/0:7,0:7:18.05:0,18,223 0/1:7,4:11:15.06:15,0,214 0/0:3,0:3:9.03:0,9,116 0/0:11,0:11:30.09:0,30,377 0/0:6,0:6:18.05:0,18,212 0/0:2,0:2:6.02:0,6,68 0/0:6,0:6:18.03:0,18,207 17 42168795 . A C 33.04 . AC=5;AF=0.060;AN=84;BaseQRankSum=-11.245;DP=967;Dels=0.00;FS=291.137;HRun=3;HaplotypeScore=0.5985;InbreedingCoeff=-0.0873;MQ=58.47;MQ0=0;MQRankSum=0.521;QD=0.40;ReadPosRankSum=-7.810 GT:AD:DP:GQ:PL 0/0:11,0:11:33.09:0,33,384 0/0:10,4:15:23.11:0,23,290 0/1:7,4:11:35.05:35,0,215 0/0:55,7:63:99:0,165,1928 0/0:33,7:40:66.19:0,66,1194 0/0:45,8:53:99:0,108,1477 0/0:30,2:32:87.26:0,87,1058 0/0:25,4:29:72.22:0,72,893 0/0:17,1:18:48.14:0,48,556 0/0:9,0:9:27.08:0,27,318 0/1:16,6:22:19.38:19,0,437 0/0:16,3:19:26.40:0,26,493 0/0:10,3:13:0.90:0,1,250 0/0:11,0:11:33.10:0,33,395 0/0:33,9:42:73.65:0,74,1133 0/0:16,1:17:48.14:0,48,575 0/0:12,2:14:36.11:0,36,425 0/0:17,3:20:48.13:0,48,553 0/0:28,2:30:75.23:0,75,903 0/0:24,8:32:42.70:0,43,801 0/0:12,7:19:16.41:0,16,397 0/0:15,2:18:43.66:0,44,467 0/0:60,14:74:99:0,137,1905 0/1:19,9:28:25.60:26,0,590 0/0:36,3:39:99:0,108,1320 0/0:37,11:48:99:0,104,1246 0/1:7,5:12:33.04:33,0,215 0/0:9,5:14:3.40:0,3,284 0/0:12,2:14:36.10:0,36,428 0/0:12,2:14:33.07:0,33,373 0/0:9,2:11:24.08:0,24,298 0/0:22,6:29:22.56:0,23,563 0/0:17,3:20:47.79:0,48,516 0/1:6,3:9:12.54:13,0,168 0/0:13,3:17:36.09:0,36,409 0/0:9,6:15:27.08:0,27,328 0/0:24,2:26:50.53:0,51,805 0/0:11,1:12:30.97:0,31,349 0/0:10,7:17:0.58:0,1,302 0/0:8,0:8:21.05:0,21,233 0/0:9,2:11:27.08:0,27,316 0/0:9,2:11:2.76:1,0,286 17 42171195 . C T 9.16 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.950;DP=353;Dels=0.00;FS=26.733;HRun=2;HaplotypeScore=0.5667;InbreedingCoeff=-0.0497;MQ=58.38;MQ0=0;MQRankSum=-1.503;QD=1.83;ReadPosRankSum=-2.413 GT:AD:DP:GQ:PL 0/0:4,0:4:9.01:0,9,99 0/0:6,0:6:15.02:0,15,170 0/0:6,0:6:15.02:0,15,157 0/0:14,1:15:42.13:0,42,532 0/0:9,0:9:27.08:0,27,345 0/0:2,0:2:6.02:0,6,81 0/0:5,0:5:15.05:0,15,193 0/0:8,0:8:21.06:0,21,265 0/0:3,1:4:6.02:0,6,70 0/0:5,0:5:15.04:0,15,177 0/0:12,1:13:33.08:0,33,392 0/0:8,1:9:18.03:0,18,208 0/0:5,0:5:12.04:0,12,148 0/0:5,0:5:15.04:0,15,170 0/0:33,0:33:81.24:0,81,1005 0/0:9,1:10:24.06:0,24,276 0/0:5,0:5:15.04:0,15,179 0/0:7,0:7:18.06:0,18,227 0/0:10,0:10:27.08:0,27,326 0/0:12,0:12:36.08:0,36,429 0/0:11,2:13:0.57:0,1,303 0/0:10,1:11:0.71:7,0,232 0/0:6,0:6:15.05:0,15,203 0/0:9,0:10:24.08:0,24,310 0/0:13,0:13:30.08:0,30,388 0/0:6,0:6:15.05:0,15,197 0/0:1,2:3:3.01:0,3,38 0/0:6,0:6:15.04:0,15,175 0/0:5,1:6:15.04:0,15,176 0/0:10,0:10:27.09:0,27,342 0/0:4,0:4:9.02:0,9,95 0/0:16,1:17:39.10:0,39,463 0/0:10,1:11:27.05:0,27,314 0/0:4,0:4:12.04:0,12,143 0/0:7,0:7:21.06:0,21,260 0/1:2,3:5:53.90:54,0,67 0/0:8,1:10:18.05:0,18,213 0/0:11,0:11:24.06:0,24,275 0/0:5,1:6:12.04:0,12,140 0/0:11,0:11:27.09:0,27,348 0/0:4,0:4:9.02:0,9,105 0/0:6,0:6:15.05:0,15,195 17 42336674 . C T 225.16 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.904;DP=950;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5332;InbreedingCoeff=-0.0121;MQ=58.53;MQ0=0;MQRankSum=0.762;QD=14.07;ReadPosRankSum=-0.538 GT:AD:DP:GQ:PL 0/0:18,0:18:54.10:0,54,566 0/0:20,0:20:57.14:0,57,629 0/0:25,0:25:75.17:0,75,802 0/0:35,0:35:93.28:0,93,1140 0/0:32,0:32:93.28:0,93,1111 0/0:23,0:23:63.19:0,63,775 0/0:21,0:21:57.17:0,57,696 0/0:27,0:27:75.22:0,75,895 0/0:22,0:22:63.17:0,63,701 0/0:18,0:18:51.13:0,51,575 0/0:20,0:20:54.15:0,54,608 0/0:21,0:21:57.14:0,57,624 0/0:19,0:19:54.11:0,54,563 0/0:21,0:21:63.17:0,63,709 0/0:52,0:52:99:0,147,1614 0/0:29,0:29:84.21:0,84,941 0/0:19,0:19:51.14:0,51,585 0/0:18,0:18:48.11:0,48,512 0/0:27,0:27:69.18:0,69,757 0/0:24,0:24:63.16:0,63,703 0/0:32,0:32:84.19:0,84,934 0/0:17,0:17:45.07:0,45,478 0/0:55,0:55:99:0,159,1928 0/0:20,0:20:57.17:0,57,691 0/0:26,0:26:75.23:0,75,916 0/0:16,0:16:48.12:0,48,560 0/0:12,0:12:33.08:0,33,349 0/0:17,0:17:48.13:0,48,534 0/0:23,0:23:66.17:0,66,735 0/0:16,0:16:45.11:0,45,496 0/0:15,0:15:42.10:0,42,455 0/0:30,0:30:84.22:0,84,928 0/0:15,0:15:42.10:0,42,456 0/0:17,0:17:45.12:0,45,500 0/0:26,0:26:69.16:0,69,767 0/0:16,0:16:48.12:0,48,516 0/0:23,0:23:57.14:0,57,633 0/1:7,9:16:99:271,0,188 0/0:18,0:18:51.14:0,51,570 0/0:11,0:11:30.06:0,30,333 0/0:19,0:19:54.14:0,54,609 0/0:19,0:19:57.15:0,57,624 17 42336944 . A G 245.06 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.742;DP=1763;Dels=0.00;FS=10.142;HRun=0;HaplotypeScore=1.1865;InbreedingCoeff=-0.0120;MQ=59.07;MQ0=0;MQRankSum=0.222;QD=7.66;ReadPosRankSum=0.181 GT:AD:DP:GQ:PL 0/0:32,2:34:96.27:0,96,1120 0/0:34,0:34:93.27:0,93,1094 0/0:22,0:22:66.20:0,66,781 0/0:78,1:79:99:0,211,2516 0/0:48,0:48:99:0,132,1597 0/0:49,0:49:99:0,135,1637 0/0:59,0:59:99:0,171,2045 0/0:41,0:41:99:0,114,1376 0/0:26,0:26:75.22:0,75,887 0/0:39,0:39:99:0,117,1345 0/0:38,0:38:99:0,102,1204 0/0:21,0:21:54.17:0,54,663 0/0:27,0:27:75.22:0,75,894 0/0:40,0:40:99:0,114,1337 0/0:102,0:102:99:0,280,3260 0/0:34,0:34:99:0,102,1176 0/0:34,0:34:90.27:0,90,1103 0/0:27,0:27:72.16:0,72,825 0/0:59,0:59:99:0,162,1955 0/0:61,0:61:99:0,162,1936 0/0:60,0:60:99:0,165,1976 0/0:45,0:45:99:0,123,1451 0/0:84,0:84:99:0,241,2850 0/0:38,0:38:99:0,105,1269 0/0:56,0:56:99:0,159,1887 0/0:44,0:44:99:0,114,1383 0/0:22,0:22:63.19:0,63,755 0/0:34,0:34:96.28:0,96,1135 0/0:24,0:24:69.20:0,69,805 0/0:35,0:35:96.29:0,96,1153 0/0:33,0:33:93.28:0,93,1107 0/0:51,0:51:99:0,144,1706 0/0:48,0:48:99:0,126,1519 0/0:34,0:34:99:0,102,1184 0/0:42,0:42:99:0,120,1434 0/0:32,0:32:96.28:0,96,1125 0/0:40,0:40:99:0,105,1281 0/1:20,12:32:99:291,0,547 0/0:35,0:35:99:0,102,1189 0/0:43,0:43:99:0,126,1510 0/0:26,0:26:78.23:0,78,914 0/0:31,0:31:90.27:0,90,1085 17 42392622 . T C 1113.53 . AC=26;AF=0.342;AN=76;BaseQRankSum=-5.833;DP=154;Dels=0.00;FS=5.506;HRun=0;HaplotypeScore=0.1657;InbreedingCoeff=0.1203;MQ=58.07;MQ0=0;MQRankSum=-0.392;QD=13.75;ReadPosRankSum=-1.296 GT:AD:DP:GQ:PL 0/0:4,0:4:12.03:0,12,141 0/0:2,0:2:6.01:0,6,63 0/0:1,0:1:3.01:0,3,36 1/1:0,1:1:3.01:35,3,0 1/1:0,1:1:3.01:36,3,0 ./. 0/1:0,1:1:1.76:33,3,0 ./. 0/0:2,0:2:6.02:0,6,70 0/1:0,1:1:1.76:32,3,0 0/0:3,0:3:6.02:0,6,84 0/0:6,0:6:12.03:0,12,146 0/0:5,0:5:12.04:0,12,153 0/0:6,0:6:15.05:0,15,192 0/0:16,0:16:39.11:0,39,479 0/1:2,5:7:52.90:140,0,53 1/1:0,2:2:6.02:65,6,0 0/1:2,1:3:23.47:23,0,64 0/0:2,0:2:6.02:0,6,74 0/0:4,0:4:9.03:0,9,117 0/1:4,3:7:78.86:79,0,128 0/1:5,1:6:17.46:17,0,133 ./. 1/1:0,1:1:3.01:35,3,0 ./. 0/0:2,0:2:6.02:0,6,73 1/1:0,4:4:12.03:129,12,0 0/1:1,3:4:22.52:62,0,23 1/1:0,3:3:9.02:101,9,0 0/0:2,0:2:6.02:0,6,72 0/0:5,0:5:15.05:0,15,188 0/1:4,5:9:99:134,0,123 0/1:3,4:7:84.94:85,0,86 0/1:0,2:2:1.76:32,3,0 0/1:6,2:8:50.48:50,0,134 0/1:1,5:6:15.55:122,0,16 0/0:7,0:7:18.06:0,18,228 0/0:2,0:2:6.02:0,6,70 0/0:2,0:2:6.02:0,6,69 0/1:3,2:5:55.37:55,0,96 0/1:2,1:3:19.62:20,0,65 0/0:2,0:2:6.02:0,6,74 17 42397995 . CTGAGATGCCA C 89.43 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.834;DP=3231;DS;FS=855.855;HRun=0;HaplotypeScore=615.5836;InbreedingCoeff=-0.0120;MQ=59.34;MQ0=0;MQRankSum=4.783;QD=0.36;ReadPosRankSum=-11.474 GT:AD:DP:GQ:PL 0/0:83,0:83:99:0,193,12069 0/0:79,0:79:99:0,232,11862 0/0:56,0:56:99:0,169,8744 0/0:122,0:122:99:0,367,19525 0/0:98,0:97:99:0,292,15191 0/0:71,0:71:99:0,208,10767 0/0:50,0:50:99:0,151,8023 0/0:82,0:82:99:0,244,12711 0/0:66,0:66:99:0,176,10196 0/0:69,0:69:99:0,208,10643 0/0:55,0:55:99:0,141,8216 0/0:50,0:50:99:0,148,7774 0/0:44,0:44:99:0,132,6721 0/0:85,0:85:99:0,230,13307 0/1:195,55:250:99:145,0,29322 0/0:58,0:58:99:0,175,9120 0/0:71,0:71:99:0,214,10955 0/0:59,0:59:99:0,153,9099 0/0:111,0:111:99:0,325,16768 0/0:135,0:135:99:0,368,20037 0/0:102,0:102:99:0,301,15509 0/0:75,0:75:99:0,216,11312 0/0:113,0:113:99:0,334,17697 0/0:68,0:68:99:0,205,10604 0/0:78,0:77:99:0,229,11979 0/0:66,0:66:99:0,199,10091 0/0:41,0:41:99:0,114,5883 0/0:49,0:49:99:0,147,7801 0/0:43,0:43:92.48:0,92,6111 0/0:65,0:65:99:0,193,9810 0/0:67,0:66:99:0,169,10206 0/0:107,0:107:99:0,297,16092 0/0:84,0:84:99:0,224,12826 0/0:49,0:48:99:0,126,7510 0/0:51,0:51:99:0,154,7972 0/0:70,0:69:99:0,208,10896 0/0:110,0:110:99:0,303,16581 0/0:65,0:65:99:0,193,9858 0/0:65,0:65:99:0,188,9956 0/0:58,0:58:99:0,175,9174 0/0:47,0:47:99:0,141,7411 0/0:64,0:64:99:0,190,9765 17 42398005 . A C 515.94 . AC=13;AF=0.155;AN=84;BaseQRankSum=-32.109;DP=4177;DS;Dels=0.01;FS=3200.000;HRun=2;HaplotypeScore=14.2845;InbreedingCoeff=-0.2202;MQ=59.16;MQ0=0;MQRankSum=-1.250;QD=0.48;ReadPosRankSum=-32.326 GT:AD:DP:GQ:PL 0/1:78,37:115:6.89:7,0,2236 0/0:80,26:106:8.28:0,8,2452 0/1:61,22:83:52.15:52,0,1914 0/0:130,25:155:99:0,232,4331 0/0:101,25:126:65.70:0,66,3443 0/0:66,21:87:19.67:0,20,2179 0/0:52,9:61:44.20:0,44,1824 0/0:82,14:96:99:0,144,2877 0/0:65,18:84:56.54:0,57,1904 0/0:69,19:88:75.09:0,75,2203 0/0:57,18:75:10.49:0,10,1761 0/1:55,18:73:39.41:39,0,1699 0/1:44,17:61:7.20:7,0,1438 0/0:84,25:109:99:0,108,2751 0/0:183,15:199:99:0,497,6341 0/1:62,22:84:83.31:83,0,1967 0/0:67,18:85:76.04:0,76,2163 0/0:56,18:74:69.36:0,69,1767 0/0:112,28:140:99:0,179,3485 0/0:127,43:170:50.77:0,51,3951 0/0:103,41:144:99:0,124,3236 0/0:77,21:98:99:0,152,2361 0/0:116,27:143:99:0,138,3691 0/0:72,10:82:99:0,127,2468 0/1:80,24:104:41.15:41,0,2543 0/1:69,19:88:14.30:14,0,2050 0/0:42,20:62:44.65:0,45,1313 0/1:53,17:70:99:108,0,1706 0/0:38,13:51:1.82:3,0,1206 0/0:68,20:88:99:0,117,2149 0/0:65,17:82:47.82:0,48,2051 0/0:101,41:142:69.61:0,70,3063 0/0:83,33:116:1.77:0,2,2507 0/1:49,17:66:42.31:42,0,1589 0/1:54,18:72:73.88:74,0,1586 0/0:73,19:92:49.55:0,50,2292 0/0:108,35:143:1.34:4,0,3157 0/1:68,28:96:16.50:17,0,1973 0/0:68,20:88:2.73:1,0,2189 0/1:60,20:81:53.31:53,0,1929 0/0:47,11:58:50.02:0,50,1494 0/1:61,27:88:99:115,0,1834 17 42398052 . A G 32779.56 . AC=28;AF=0.333;AN=84;BaseQRankSum=27.980;DP=4502;DS;Dels=0.00;FS=0.509;HRun=0;HaplotypeScore=2.5191;InbreedingCoeff=-0.1786;MQ=59.19;MQ0=0;MQRankSum=0.756;QD=13.63;ReadPosRankSum=-1.311 GT:AD:DP:GQ:PL 0/0:119,0:119:99:0,325,3898 0/0:104,0:104:99:0,286,3454 0/1:52,30:82:99:845,0,1481 0/1:102,83:185:99:2282,0,2713 0/1:77,55:132:99:1798,0,2212 0/1:49,58:107:99:1706,0,1259 0/1:47,29:76:99:739,0,1328 0/1:74,47:121:99:1287,0,1839 0/1:45,36:81:99:954,0,1261 0/1:52,32:84:99:814,0,1538 0/1:40,35:76:99:933,0,1109 0/0:93,0:93:99:0,226,2804 0/0:79,0:80:99:0,205,2468 0/0:100,0:101:99:0,262,3196 0/0:244,0:249:99:0,641,7690 0/1:40,33:73:99:920,0,1213 0/1:45,49:94:99:1455,0,1184 0/1:37,37:75:99:1054,0,1031 0/0:169,1:171:99:0,382,5088 0/0:167,0:168:99:0,448,5401 0/1:75,65:142:99:1511,0,1995 0/1:50,46:96:99:1225,0,1354 0/0:169,0:169:99:0,421,5320 0/1:62,39:101:99:1161,0,1612 0/1:77,43:120:99:1131,0,1964 0/0:93,1:94:99:0,232,2904 1/1:0,67:67:99:2261,175,0 0/1:42,27:69:99:660,0,1179 1/1:0,55:55:99:1982,153,0 0/0:95,3:98:99:0,259,3089 0/0:92,0:92:99:0,238,2918 0/1:84,59:143:99:1532,0,2223 0/0:119,1:120:99:0,310,3805 1/1:0,73:73:99:2506,199,0 0/1:51,27:79:99:746,0,1482 0/1:50,57:107:99:1672,0,1258 0/0:154,0:154:99:0,406,4924 0/0:109,2:111:99:0,206,3283 0/0:95,1:96:99:0,220,3063 0/1:59,42:101:99:1108,0,1667 0/1:46,19:66:99:499,0,1297 0/0:76,2:78:99:0,189,2551 17 42398463 . G C 3.70 . 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T C 16594.32 . AC=8;AF=0.095;AN=84;BaseQRankSum=22.976;DP=6848;DS;Dels=0.00;FS=0.818;HRun=0;HaplotypeScore=4.3294;InbreedingCoeff=-0.1053;MQ=58.95;MQ0=0;MQRankSum=-1.630;QD=13.25;ReadPosRankSum=-2.705 GT:AD:DP:GQ:PL 0/0:123,0:123:99:0,346,4097 0/0:148,0:148:99:0,376,4558 0/0:133,0:134:99:0,355,4196 0/0:249,0:250:99:0,674,8097 0/0:250,0:250:99:0,662,8007 0/0:213,0:215:99:0,566,7068 0/0:210,0:210:99:0,545,6685 0/0:208,0:209:99:0,542,6561 0/1:70,89:159:99:2402,0,1726 0/1:49,60:109:99:1575,0,1322 0/1:78,59:137:99:1580,0,2144 0/0:134,0:134:99:0,349,4199 0/0:135,0:136:99:0,367,4404 0/0:144,0:144:99:0,394,4686 0/1:120,122:243:99:3529,0,3175 0/0:124,0:124:99:0,349,4085 0/1:82,74:156:99:1949,0,2333 0/0:124,0:124:99:0,322,3910 0/0:207,0:207:99:0,542,6548 0/0:217,0:217:99:0,548,6689 0/1:99,85:186:99:2232,0,2541 0/1:82,62:145:99:1718,0,2215 0/0:246,0:246:99:0,653,7916 0/0:176,0:176:99:0,427,5277 0/0:207,0:207:99:0,542,6601 0/0:168,0:168:99:0,421,5192 0/0:106,0:106:99:0,286,3430 0/0:122,0:122:99:0,325,3880 0/0:121,0:121:99:0,328,3918 0/0:150,0:150:99:0,397,4739 0/0:128,0:128:99:0,340,4079 0/0:202,0:202:99:0,515,6256 0/0:143,0:143:99:0,361,4372 0/0:125,0:125:99:0,340,4056 0/0:139,0:139:99:0,361,4363 0/0:174,0:174:99:0,469,5622 0/0:191,0:191:99:0,484,5923 0/0:156,0:156:99:0,418,4945 0/0:119,0:119:99:0,325,3846 0/0:170,0:170:99:0,445,5352 0/0:128,0:128:99:0,331,3945 0/1:56,55:111:99:1608,0,1540 17 42449789 . G A 16364.84 . AC=35;AF=0.417;AN=84;BaseQRankSum=-10.400;DP=1481;Dels=0.00;FS=2.477;HRun=1;HaplotypeScore=0.9921;InbreedingCoeff=-0.2245;MQ=59.08;MQ0=0;MQRankSum=0.846;QD=15.95;ReadPosRankSum=1.154 GT:AD:DP:GQ:PL 0/1:13,15:28:99:464,0,356 0/1:18,13:31:99:319,0,487 0/1:9,12:21:99:312,0,258 0/1:37,24:61:99:647,0,1146 0/0:66,0:66:99:0,175,2307 0/0:48,0:48:99:0,132,1739 0/0:32,0:32:90.29:0,90,1175 0/0:33,0:33:87.27:0,87,1135 1/1:0,34:35:96.28:1140,96,0 1/1:0,32:32:87.22:1008,87,0 0/1:10,18:28:99:522,0,264 0/0:24,0:24:57.16:0,57,703 0/0:34,0:34:99:0,99,1209 0/0:35,0:35:99:0,99,1225 0/1:40,63:103:99:1741,0,1056 0/0:27,0:27:78.24:0,78,968 0/1:11,7:18:99:204,0,345 1/1:0,28:28:75.23:925,75,0 0/1:21,21:42:99:567,0,535 0/0:46,0:46:99:0,126,1536 0/1:26,22:49:99:590,0,775 0/1:20,18:38:99:475,0,583 0/1:48,36:84:99:955,0,1492 0/1:13,12:25:99:271,0,449 0/1:26,17:43:99:498,0,825 0/1:27,12:39:99:326,0,791 0/1:7,7:14:99:198,0,209 0/1:10,20:30:99:585,0,240 0/1:15,14:29:99:390,0,394 0/1:13,12:25:99:354,0,387 1/1:0,19:19:57.16:667,57,0 0/0:48,0:48:99:0,120,1524 0/0:40,0:40:99:0,111,1394 1/1:0,21:21:60.18:732,60,0 0/1:16,4:20:88.46:88,0,458 0/1:17,13:30:99:380,0,457 0/1:24,23:47:99:660,0,629 0/0:22,0:22:60.18:0,60,728 0/1:4,12:16:97.76:347,0,98 0/1:11,15:26:99:409,0,265 0/1:12,11:23:99:329,0,351 0/1:12,9:21:99:258,0,369 17 42453065 . A C 4574.62 . AC=36;AF=0.429;AN=84;BaseQRankSum=9.046;DP=365;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4554;InbreedingCoeff=-0.1457;MQ=59.30;MQ0=0;MQRankSum=-2.188;QD=17.66;ReadPosRankSum=0.637 GT:AD:DP:GQ:PL 0/1:2,2:4:51.06:62,0,51 0/1:3,4:7:82.82:131,0,83 0/1:4,4:8:99:123,0,109 0/1:7,9:16:99:263,0,196 0/0:16,0:16:48.13:0,48,545 0/0:11,0:11:30.09:0,30,355 0/0:12,0:12:33.10:0,33,398 0/0:3,0:3:9.03:0,9,111 1/1:0,4:4:12.03:129,12,0 1/1:0,6:6:18.05:214,18,0 0/1:2,4:6:51.55:128,0,52 0/0:11,0:11:27.08:0,27,311 0/0:5,0:6:15.04:0,15,172 0/0:9,0:9:24.06:0,24,263 0/1:17,13:30:99:284,0,432 0/0:9,0:9:27.07:0,27,303 0/1:8,5:13:99:126,0,136 1/1:0,5:5:15.04:183,15,0 0/1:6,2:8:48.18:48,0,175 0/0:9,0:9:21.06:0,21,256 0/1:6,6:13:99:160,0,115 0/1:8,7:16:99:168,0,228 0/1:7,7:14:99:217,0,162 0/1:2,5:7:51.16:189,0,51 0/1:3,1:4:28.61:29,0,94 0/1:5,2:7:67.83:68,0,101 0/1:0,1:1:1.76:39,3,0 0/1:4,3:7:80.09:80,0,122 0/1:2,6:8:43.92:169,0,44 0/1:2,2:4:55.65:59,0,56 1/1:0,9:10:27.09:340,27,0 0/0:7,0:7:18.05:0,18,205 0/0:8,0:8:21.06:0,21,236 1/1:0,11:11:33.10:407,33,0 0/1:2,8:10:47.31:202,0,47 0/1:2,3:5:51.76:102,0,52 0/1:7,4:11:99:116,0,225 0/0:5,0:5:15.03:0,15,161 0/1:3,4:7:86.42:130,0,86 0/1:2,4:6:54.10:124,0,54 1/1:0,5:5:15.05:186,15,0 0/1:3,3:6:88.56:96,0,89 17 42851729 . C T 4451.62 . AC=54;AF=0.643;AN=84;BaseQRankSum=0.020;DP=222;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2341;InbreedingCoeff=0.1445;MQ=56.57;MQ0=0;MQRankSum=1.357;QD=23.55;ReadPosRankSum=-0.007 GT:AD:DP:GQ:PL 1/1:0,9:9:27.05:310,27,0 1/1:0,5:5:12.03:146,12,0 1/1:0,2:2:3.01:45,3,0 1/1:0,7:7:18.06:217,18,0 1/1:0,4:4:12.03:135,12,0 0/1:2,3:5:53.49:82,0,53 1/1:0,1:1:3.01:40,3,0 0/1:3,2:5:53.64:54,0,100 1/1:0,9:9:24.05:277,24,0 1/1:0,8:8:24.07:277,24,0 1/1:0,2:2:6.02:71,6,0 0/0:4,0:4:12.03:0,12,138 0/0:3,0:3:9.03:0,9,110 0/0:4,0:4:12.04:0,12,147 1/1:0,9:9:21.07:261,21,0 1/1:0,5:5:15.05:181,15,0 0/1:2,2:4:56.65:57,0,60 0/0:5,0:5:12.03:0,12,142 0/1:3,6:9:71.05:187,0,71 1/1:0,8:8:21.06:260,21,0 1/1:0,4:4:12.04:144,12,0 1/1:0,3:3:9.03:103,9,0 0/1:8,4:12:99:105,0,242 1/1:0,1:1:3.01:36,3,0 0/1:4,3:7:75.42:75,0,128 0/0:1,0:1:3.01:0,3,36 1/1:0,4:4:12.04:140,12,0 1/1:0,5:5:15.04:171,15,0 0/1:3,4:7:82.72:114,0,83 1/1:0,5:5:15.05:178,15,0 0/1:4,3:7:87.33:87,0,108 0/1:2,8:10:38.86:216,0,39 1/1:0,3:3:9.01:95,9,0 0/0:3,0:3:9.02:0,9,97 0/0:4,0:4:9.02:0,9,101 0/1:2,2:4:48.79:49,0,64 0/0:9,0:9:27.06:0,27,291 0/1:2,3:5:50.80:93,0,51 0/1:6,2:8:49.43:49,0,146 0/1:2,1:3:27.95:28,0,57 1/1:0,4:4:9.02:111,9,0 0/1:3,2:5:57.21:57,0,76 17 42855554 . T C 17814.65 . AC=54;AF=0.643;AN=84;BaseQRankSum=-8.188;DP=933;Dels=0.00;FS=3.286;HRun=0;HaplotypeScore=0.6694;InbreedingCoeff=0.1097;MQ=59.02;MQ0=0;MQRankSum=-1.752;QD=21.65;ReadPosRankSum=-1.124 GT:AD:DP:GQ:PL 1/1:0,15:15:45.12:519,45,0 1/1:0,26:26:72.19:836,72,0 1/1:0,24:24:63.13:679,63,0 1/1:0,28:28:69.18:840,69,0 1/1:0,28:28:81.24:994,81,0 0/1:18,8:26:99:122,0,530 0/1:9,6:15:99:177,0,259 0/1:11,12:23:99:352,0,278 1/1:0,20:20:51.15:602,51,0 1/1:0,20:20:54.15:616,54,0 1/1:0,26:26:75.17:840,75,0 0/0:18,0:18:51.16:0,51,626 0/0:10,0:10:27.08:0,27,334 0/1:16,9:25:99:217,0,484 1/1:0,56:56:99:1645,141,0 1/1:0,23:23:54.13:599,54,0 0/1:17,9:26:99:227,0,533 0/0:17,0:17:42.12:0,42,502 0/1:13,14:27:99:387,0,331 1/1:0,24:24:69.17:757,69,0 1/1:0,25:25:66.17:745,66,0 1/1:1,17:18:13.35:519,13,0 0/1:7,16:23:99:473,0,145 0/1:18,6:24:99:126,0,520 0/1:14,13:27:99:372,0,344 0/0:16,0:16:45.14:0,45,554 1/1:0,15:15:39.10:430,39,0 1/1:0,20:20:54.11:610,54,0 0/1:7,5:12:99:135,0,219 1/1:0,25:25:63.17:721,63,0 0/1:12,9:21:99:212,0,298 0/1:11,17:28:99:466,0,240 1/1:0,23:23:63.17:713,63,0 0/0:19,0:19:54.16:0,54,648 0/1:15,1:16:1.59:0,4,453 0/1:5,7:12:99:207,0,145 0/0:30,0:30:78.19:0,78,928 0/1:18,12:30:99:260,0,521 0/1:6,16:22:99:460,0,116 0/1:11,7:18:99:188,0,317 1/1:0,14:14:42.12:492,42,0 0/1:6,12:18:99:275,0,138 17 42926724 . C G 16.49 . AC=2;AF=0.024;AN=84;BaseQRankSum=-13.482;DP=2109;Dels=0.00;FS=1093.683;HRun=1;HaplotypeScore=0.8493;InbreedingCoeff=-0.0263;MQ=58.46;MQ0=0;MQRankSum=0.300;QD=0.11;ReadPosRankSum=-14.364 GT:AD:DP:GQ:PL 0/0:24,6:32:35.20:0,35,697 0/0:26,5:31:78.17:0,78,822 0/0:29,5:34:78.68:0,79,852 0/1:79,31:110:45.31:45,0,2229 0/0:72,21:93:99:0,99,2224 0/0:54,14:68:41.11:0,41,1603 0/0:45,7:52:99:0,129,1501 0/0:38,7:45:45.39:0,45,1125 0/0:35,7:42:62.91:0,63,966 0/0:25,6:31:22.86:0,23,705 0/0:39,10:49:12.64:0,13,1055 0/0:28,5:33:26.86:0,27,731 0/0:20,3:23:54.12:0,54,571 0/0:40,6:46:77.69:0,78,1118 0/0:114,18:133:99:0,203,3216 0/0:42,9:51:99:0,120,1271 0/0:30,6:37:29.12:0,29,875 0/0:27,7:34:22.08:0,22,789 0/0:49,7:56:88.44:0,88,1391 0/0:63,16:79:99:0,103,1759 0/0:48,3:51:99:0,126,1312 0/0:30,12:42:27.56:0,28,827 0/0:58,15:73:86.85:0,87,1922 0/0:46,10:56:91.47:0,91,1339 0/0:52,22:74:77.40:0,77,1587 0/0:37,19:56:23.42:0,23,1135 0/0:24,6:30:63.14:0,63,667 0/0:35,6:41:65.65:0,66,996 0/0:32,4:36:92.44:0,92,962 0/0:22,7:29:10.82:0,11,592 0/0:30,6:36:28.94:0,29,812 0/0:51,5:56:99:0,116,1417 0/0:40,7:47:80.33:0,80,1129 0/0:32,3:35:65.66:0,66,981 0/0:29,4:33:84.21:0,84,909 0/0:46,11:57:26.27:0,26,1245 0/0:61,11:72:68.59:0,69,1714 0/0:30,7:37:84.21:0,84,903 0/0:42,8:50:99:0,113,1195 0/1:28,14:43:33.35:33,0,737 0/0:36,6:42:99:0,102,1066 0/0:29,5:34:55.88:0,56,906 17 42953409 . A G 24061.73 . AC=17;AF=0.202;AN=84;BaseQRankSum=-13.006;DP=4712;DS;Dels=0.00;FS=1.582;HRun=1;HaplotypeScore=3.9825;InbreedingCoeff=0.0413;MQ=59.15;MQ0=1;MQRankSum=0.010;QD=15.40;ReadPosRankSum=0.257 GT:AD:DP:GQ:PL 0/0:90,1:92:99:0,253,3022 0/0:83,0:83:99:0,220,2568 0/0:74,2:76:99:0,183,2457 0/0:187,1:189:99:0,532,6385 0/0:191,0:191:99:0,530,6432 0/0:173,0:173:99:0,490,6063 0/0:145,0:145:99:0,406,4932 0/0:140,0:141:99:0,397,4847 0/1:41,42:83:99:1174,0,1087 0/0:89,2:91:99:0,226,2705 1/1:1,75:76:99:2323,205,0 0/0:76,0:76:99:0,208,2486 0/1:32,38:70:99:1035,0,888 0/0:73,1:74:99:0,199,2381 0/0:238,1:241:99:0,614,7299 0/0:70,1:71:99:0,196,2331 0/0:79,0:79:99:0,202,2445 0/1:32,36:68:99:960,0,932 0/1:92,71:163:99:1758,0,2429 1/1:0,162:163:99:5168,451,0 0/0:166,5:172:99:0,424,5104 0/1:66,62:128:99:1616,0,1759 0/0:185,0:186:99:0,514,6144 0/0:143,0:143:99:0,403,4885 0/1:86,80:166:99:2270,0,2442 0/1:54,49:103:99:1271,0,1569 0/0:69,1:70:99:0,186,2187 0/1:29,39:68:99:1088,0,733 0/0:73,0:73:99:0,193,2286 0/0:99,0:99:99:0,271,3196 0/1:33,23:56:99:535,0,989 0/0:207,1:209:99:0,578,7002 0/0:115,0:115:99:0,328,3890 0/1:43,33:76:99:886,0,1255 0/0:69,0:69:99:0,181,2181 0/1:40,40:81:99:1045,0,1127 0/1:90,78:170:99:1948,0,2318 0/0:85,2:87:99:0,238,2836 0/1:45,45:90:99:986,0,1310 0/0:84,0:84:99:0,229,2727 0/0:68,0:68:99:0,175,2089 0/0:53,0:53:99:0,141,1696 17 42953444 . T C 193.87 . AC=1;AF=0.012;AN=84;BaseQRankSum=-23.280;DP=5231;DS;Dels=0.00;FS=220.081;HRun=1;HaplotypeScore=2.9977;InbreedingCoeff=-0.0123;MQ=59.26;MQ0=1;MQRankSum=1.017;QD=1.18;ReadPosRankSum=-11.790 GT:AD:DP:GQ:PL 0/0:65,20:85:99:0,139,1923 0/0:75,15:90:99:0,124,1648 0/0:57,16:75:99:0,117,1373 0/0:178,52:231:99:0,403,4602 0/0:177,54:231:99:0,348,4148 0/0:155,39:195:99:0,288,3566 0/0:118,19:139:99:0,205,2768 0/0:138,30:168:99:0,261,3000 0/0:68,16:85:99:0,159,1805 0/0:66,24:90:99:0,99,1704 0/0:49,21:70:76.01:0,76,1357 0/0:70,14:84:99:0,144,1784 0/0:54,12:66:97.66:0,98,1377 0/0:71,13:85:99:0,165,1842 0/0:167,83:250:68.74:0,69,3773 0/0:62,18:81:99:0,135,1497 0/0:57,8:65:99:0,129,1434 0/0:63,20:83:99:0,147,1636 0/0:131,59:190:40.81:0,41,3420 0/0:208,27:236:99:0,481,5467 0/0:126,46:173:99:0,136,3068 0/0:115,23:139:99:0,210,2538 0/0:202,46:249:99:0,387,4507 0/0:137,30:167:99:0,240,3119 0/0:133,31:165:99:0,276,3218 0/0:107,20:128:99:0,237,2613 0/0:56,21:77:99:0,103,1429 0/0:57,14:71:99:0,105,1398 0/0:58,12:70:83.33:0,83,1287 0/0:79,22:102:99:0,158,2062 0/0:59,18:77:99:0,113,1489 0/0:210,26:237:99:0,474,5621 0/0:97,27:125:99:0,115,2297 0/0:63,21:84:99:0,138,1619 0/0:60,19:79:74.39:0,74,1172 0/0:70,19:89:99:0,180,2057 0/1:110,54:164:99:240,0,2524 0/0:64,19:83:16.87:0,17,1246 0/0:81,24:106:99:0,144,2124 0/0:66,19:86:65.33:0,65,1565 0/0:58,16:74:99:0,120,1338 0/0:69,17:86:99:0,131,1728 17 42987512 . G A 2625.07 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.040;DP=2943;Dels=0.00;FS=1.269;HRun=1;HaplotypeScore=2.1810;InbreedingCoeff=-0.0370;MQ=58.74;MQ0=2;MQRankSum=2.401;QD=11.93;ReadPosRankSum=0.850 GT:AD:DP:GQ:PL 0/0:52,0:53:99:0,138,1545 0/0:50,0:50:99:0,132,1467 0/0:47,0:47:99:0,117,1257 0/0:140,0:140:99:0,343,4127 0/0:126,0:126:99:0,313,3797 0/0:98,0:98:99:0,229,2734 0/0:105,0:105:99:0,268,3165 0/0:88,0:88:99:0,226,2661 0/0:63,0:63:99:0,174,1916 0/0:41,0:41:99:0,105,1194 0/0:56,0:56:99:0,138,1544 0/0:51,0:52:99:0,138,1483 0/0:41,0:42:99:0,111,1222 0/0:53,0:53:99:0,144,1606 0/0:162,0:163:99:0,415,4613 0/0:50,0:50:99:0,132,1495 0/0:58,0:58:99:0,159,1734 0/0:39,0:39:99:0,114,1258 0/0:82,0:82:99:0,207,2285 0/0:112,1:113:99:0,264,3145 0/1:39,39:78:99:922,0,941 0/0:68,0:68:99:0,177,1960 0/0:125,0:127:99:0,325,3949 0/0:79,0:79:99:0,189,2239 0/0:87,0:88:99:0,220,2549 0/0:81,0:82:99:0,210,2442 0/0:39,0:39:93.24:0,93,1054 0/0:54,0:54:99:0,150,1695 0/0:50,0:50:99:0,129,1491 0/0:54,0:54:99:0,138,1561 0/0:45,0:45:99:0,117,1301 0/1:52,41:93:99:1039,0,1233 0/0:89,0:89:99:0,237,2589 0/0:39,0:39:99:0,108,1202 0/0:59,1:60:99:0,126,1672 0/0:50,0:50:99:0,141,1567 0/0:64,0:64:99:0,153,1696 0/0:52,0:52:99:0,135,1423 0/0:58,0:58:99:0,147,1632 0/0:47,0:47:99:0,123,1345 0/0:58,0:59:99:0,144,1597 0/1:20,29:49:99:740,0,464 17 42987523 . G A 8225.95 . AC=7;AF=0.083;AN=84;BaseQRankSum=6.016;DP=3355;Dels=0.00;FS=2.193;HRun=0;HaplotypeScore=8.9645;InbreedingCoeff=-0.0909;MQ=59.08;MQ0=2;MQRankSum=0.994;QD=12.91;ReadPosRankSum=2.630 GT:AD:DP:GQ:PL 0/0:62,0:62:99:0,174,1926 0/0:66,0:66:99:0,189,2084 0/0:59,0:59:99:0,168,1809 0/1:76,68:145:99:1873,0,2253 0/0:133,0:133:99:0,376,4538 0/0:104,0:104:99:0,292,3510 0/0:117,0:117:99:0,322,3860 0/0:107,0:107:99:0,310,3729 0/0:64,0:64:99:0,183,2023 0/0:52,0:52:99:0,147,1628 0/0:65,0:65:99:0,186,2004 0/0:59,0:59:99:0,168,1814 0/0:45,0:45:99:0,120,1368 0/0:56,0:56:99:0,162,1770 0/0:186,0:186:99:0,517,5715 0/0:62,0:62:99:0,177,1960 0/0:70,0:70:99:0,198,2127 0/1:23,27:50:99:783,0,579 0/1:56,43:102:99:1159,0,1475 0/0:134,0:134:99:0,370,4065 0/0:109,0:110:99:0,298,3319 0/0:71,1:72:99:0,164,2152 0/1:74,60:134:99:1598,0,2109 0/0:85,1:86:99:0,213,2808 0/0:102,0:102:99:0,286,3410 0/0:94,0:94:99:0,265,3136 0/0:44,0:44:99:0,126,1376 0/0:68,0:68:99:0,202,2237 0/0:56,1:57:99:0,129,1793 0/1:30,33:63:99:969,0,684 0/1:29,25:54:99:648,0,758 0/0:104,0:104:99:0,304,3329 0/1:44,45:89:99:1197,0,1142 0/0:37,0:37:99:0,108,1192 0/0:65,0:65:99:0,189,2079 0/0:61,0:61:99:0,177,1965 0/0:78,0:78:99:0,217,2326 0/0:62,0:62:99:0,177,1897 0/0:69,0:69:99:0,186,2037 0/0:57,0:57:99:0,159,1747 0/0:62,0:62:99:0,165,1765 0/0:48,1:49:99:0,101,1450 17 42987524 . T C 18243.62 . AC=16;AF=0.190;AN=84;BaseQRankSum=15.906;DP=3459;Dels=0.00;FS=6.050;HRun=0;HaplotypeScore=9.0593;InbreedingCoeff=-0.2353;MQ=59.16;MQ0=2;MQRankSum=0.602;QD=14.40;ReadPosRankSum=0.774 GT:AD:DP:GQ:PL 0/0:63,0:65:99:0,180,2102 0/0:66,0:68:99:0,190,2223 0/0:61,0:62:99:0,171,1908 0/1:77,70:150:99:2134,0,2253 0/0:131,0:135:99:0,376,4521 0/0:108,0:112:99:0,307,3721 0/0:113,0:119:99:0,325,3901 0/0:111,0:112:99:0,322,3812 0/0:67,0:67:99:0,193,2226 0/0:51,1:53:99:0,150,1731 0/0:64,0:65:99:0,187,2157 0/1:22,35:59:99:1096,0,488 0/0:48,0:50:99:0,138,1587 0/1:27,33:61:99:945,0,760 0/0:193,0:195:99:0,547,6322 0/0:63,0:63:99:0,180,2082 0/0:69,0:69:99:0,205,2343 0/1:25,28:53:99:853,0,699 0/1:57,44:103:99:1179,0,1639 0/0:134,0:139:99:0,385,4444 0/0:107,0:110:99:0,292,3452 0/0:73,0:73:99:0,204,2324 0/1:75,63:139:99:1935,0,2143 0/1:53,35:88:99:1002,0,1516 0/1:47,58:106:99:1681,0,1300 0/0:96,0:99:99:0,277,3251 0/0:43,0:44:99:0,123,1426 0/0:68,0:69:99:0,205,2367 0/1:31,26:57:99:757,0,860 0/1:31,34:65:99:1022,0,777 0/1:30,26:57:99:733,0,889 0/0:103,0:105:99:0,301,3475 0/1:44,45:90:99:1290,0,1193 0/0:40,0:40:99:0,114,1325 0/1:33,32:66:99:970,0,959 0/0:60,0:60:99:0,177,2027 0/0:80,0:83:99:0,232,2655 0/1:28,34:62:99:899,0,749 0/0:67,0:69:99:0,196,2263 0/1:25,32:58:99:987,0,646 0/0:64,0:66:99:0,177,2032 0/1:25,26:53:99:761,0,711 17 43012651 . G A 355.73 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.021;DP=884;Dels=0.00;FS=6.234;HRun=2;HaplotypeScore=0.9229;InbreedingCoeff=-0.0246;MQ=59.08;MQ0=0;MQRankSum=0.905;QD=12.70;ReadPosRankSum=-0.034 GT:AD:DP:GQ:PL 0/0:15,0:15:45.12:0,45,503 0/0:13,0:13:33.08:0,33,366 0/0:7,0:7:21.04:0,21,222 0/0:36,0:36:96.26:0,96,1151 0/0:36,0:36:99:0,108,1260 0/0:23,0:23:60.16:0,60,711 0/0:17,0:17:45.12:0,45,533 0/0:27,0:27:66.17:0,66,784 0/1:5,7:12:93.14:187,0,93 0/0:24,0:24:66.13:0,66,705 0/1:8,8:16:99:232,0,220 0/0:24,0:24:66.15:0,66,736 0/0:10,0:10:24.06:0,24,276 0/0:14,0:14:42.11:0,42,459 0/0:44,0:45:99:0,120,1318 0/0:20,0:20:57.15:0,57,647 0/0:10,0:10:30.08:0,30,330 0/0:20,0:20:45.12:0,45,525 0/0:18,0:18:51.12:0,51,564 0/0:29,1:30:78.16:0,78,838 0/0:28,0:28:72.19:0,72,800 0/0:18,0:18:48.10:0,48,532 0/0:46,0:46:99:0,126,1499 0/0:22,0:22:60.17:0,60,730 0/0:24,0:24:72.20:0,72,846 0/0:20,0:20:54.15:0,54,656 0/0:13,0:13:30.07:0,30,349 0/0:14,0:14:36.07:0,36,386 0/0:16,0:16:42.12:0,42,489 0/0:23,0:23:63.16:0,63,714 0/0:21,0:21:63.15:0,63,691 0/0:34,0:34:90.21:0,90,994 0/0:22,0:22:66.17:0,66,742 0/0:21,0:21:63.15:0,63,707 0/0:12,0:12:33.09:0,33,367 0/0:18,0:18:54.10:0,54,594 0/0:32,0:32:90.22:0,90,986 0/0:17,0:17:45.12:0,45,503 0/0:15,0:15:45.10:0,45,482 0/0:23,0:23:69.15:0,69,751 0/0:17,0:17:51.13:0,51,552 0/0:11,0:11:30.08:0,30,344 17 43159021 . T C 258.53 . AC=11;AF=0.131;AN=84;BaseQRankSum=-13.548;DP=1865;Dels=0.00;FS=168.721;HRun=2;HaplotypeScore=1.7756;InbreedingCoeff=-0.1790;MQ=58.98;MQ0=0;MQRankSum=1.719;QD=0.45;ReadPosRankSum=-5.890 GT:AD:DP:GQ:PL 0/0:21,15:36:11.49:0,11,400 0/0:23,16:39:22.56:0,23,521 0/1:13,13:26:32.93:33,0,224 0/1:16,30:46:87.45:87,0,358 0/1:22,40:63:16.62:17,0,545 0/0:35,23:58:11.53:0,12,719 0/0:43,18:62:96.11:0,96,988 0/0:34,21:55:11.21:0,11,656 0/0:16,13:29:13.43:0,13,391 0/1:13,10:23:43.92:44,0,275 0/0:25,15:40:20.72:0,21,557 0/0:29,13:42:14.61:0,15,428 0/0:21,16:37:45.16:0,45,475 0/0:25,11:36:5.86:0,6,580 0/1:63,51:114:36.66:37,0,1349 0/0:26,8:34:39.06:0,39,401 0/0:18,9:27:10.55:0,11,399 0/0:21,11:32:36.09:0,36,404 0/0:24,23:47:2.93:0,3,586 0/0:44,23:67:77.40:0,77,985 0/0:19,14:33:14.15:0,14,464 0/1:23,13:36:9.90:10,0,468 0/1:30,34:64:31.54:32,0,604 0/0:32,18:50:72.14:0,72,790 0/1:37,28:65:20.11:20,0,658 0/0:33,18:51:40.74:0,41,739 0/0:14,8:23:36.06:0,36,384 0/0:23,15:38:45.08:0,45,476 0/1:18,19:37:20.77:21,0,412 0/0:21,18:39:30.47:0,30,586 0/0:21,14:37:48.07:0,48,499 0/1:36,19:56:39:39,0,700 0/0:30,14:44:44.45:0,44,657 0/0:32,16:48:43.49:0,43,726 0/0:16,12:28:5.49:0,5,335 0/1:20,21:41:54.07:54,0,374 0/0:39,25:64:11.91:0,12,1015 0/0:23,14:37:25.58:0,26,554 0/0:13,14:28:2.76:1,0,265 0/0:27,17:44:34.86:0,35,623 0/0:24,16:40:8.93:0,9,608 0/0:24,25:49:35.56:0,36,652 17 43190542 . A G 343.14 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.604;DP=757;Dels=0.00;FS=2.405;HRun=0;HaplotypeScore=0.8202;InbreedingCoeff=-0.0248;MQ=58.47;MQ0=0;MQRankSum=0.590;QD=9.80;ReadPosRankSum=1.283 GT:AD:DP:GQ:PL 0/0:13,0:13:39.10:0,39,449 0/0:20,0:20:51.16:0,51,627 0/0:12,0:12:33.10:0,33,398 0/0:33,0:33:96.29:0,96,1164 0/0:18,0:18:54.14:0,54,642 0/1:11,8:19:99:184,0,266 0/1:9,7:16:99:221,0,286 0/0:15,0:16:45.13:0,45,531 0/0:14,0:14:39.12:0,39,476 0/0:14,0:14:39.11:0,39,462 0/0:11,0:11:33.10:0,33,389 0/0:14,0:15:33.10:0,33,413 0/0:10,0:10:27.08:0,27,324 0/0:17,0:17:45.14:0,45,569 0/0:51,0:51:99:0,135,1596 0/0:15,0:15:36.12:0,36,469 0/0:16,0:16:45.13:0,45,539 0/0:19,0:19:57.16:0,57,671 0/0:17,0:17:51.16:0,51,617 0/0:47,0:47:99:0,123,1479 0/0:25,0:25:63.20:0,63,783 0/0:24,0:24:57.18:0,57,712 0/0:27,0:27:81.24:0,81,969 0/0:7,0:7:21.06:0,21,241 0/0:20,0:20:60.17:0,60,707 0/0:14,0:14:42.13:0,42,501 0/0:7,0:7:21.06:0,21,249 0/0:14,0:14:39.12:0,39,464 0/0:21,0:21:51.16:0,51,645 0/0:19,0:19:51.15:0,51,608 0/0:16,0:16:48.15:0,48,581 0/0:29,0:29:69.16:0,69,827 0/0:18,0:18:51.15:0,51,595 0/0:9,0:9:27.08:0,27,316 0/0:16,0:16:48.14:0,48,570 0/0:16,0:16:45.12:0,45,538 0/0:21,0:21:63.19:0,63,748 0/0:8,0:8:24.07:0,24,281 0/0:9,0:9:27.07:0,27,306 0/0:21,0:21:57.16:0,57,692 0/0:10,0:10:27.07:0,27,315 0/0:13,0:13:36.11:0,36,449 17 43190846 . G A 147.75 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.784;DP=490;Dels=0.00;FS=1.524;HRun=0;HaplotypeScore=0.3720;InbreedingCoeff=-0.0292;MQ=58.71;MQ0=0;MQRankSum=-0.327;QD=14.77;ReadPosRankSum=-0.422 GT:AD:DP:GQ:PL 0/0:11,0:11:30.09:0,30,353 0/0:8,0:8:21.06:0,21,261 0/0:8,0:8:21.07:0,21,268 0/0:15,0:15:33.11:0,33,452 0/0:18,0:18:45.14:0,45,582 0/0:11,0:11:24.08:0,24,333 0/0:7,0:7:18.06:0,18,239 0/0:5,0:5:15.04:0,15,180 0/0:11,0:11:33.09:0,33,375 0/0:6,0:6:18.05:0,18,213 0/0:4,0:4:12.03:0,12,136 0/0:11,0:11:30.08:0,30,351 0/1:4,6:10:82.33:192,0,82 0/0:5,0:5:15.04:0,15,175 0/0:39,0:39:99:0,102,1192 0/0:3,0:3:9.03:0,9,108 0/0:10,0:10:30.08:0,30,349 0/0:12,0:12:27.08:0,27,323 0/0:26,0:26:66.17:0,66,789 0/0:21,0:21:57.16:0,57,677 0/0:17,0:17:45.11:0,45,505 0/0:16,0:16:45.12:0,45,517 0/0:17,0:17:45.14:0,45,587 0/0:8,0:8:18.06:0,18,246 0/0:12,0:12:33.10:0,33,415 0/0:4,0:4:12.04:0,12,152 0/0:6,0:6:18.05:0,18,210 0/0:8,0:8:24.07:0,24,275 0/0:10,0:10:27.08:0,27,326 0/0:10,0:10:30.09:0,30,363 0/0:12,0:12:33.09:0,33,395 0/0:21,0:21:54.14:0,54,662 0/0:12,0:12:33.09:0,33,390 0/0:6,0:6:15.04:0,15,189 0/0:10,0:11:27.08:0,27,340 0/0:11,0:11:33.09:0,33,390 0/0:18,0:18:42.11:0,42,521 0/0:13,0:13:39.11:0,39,461 0/0:10,0:10:30.06:0,30,313 0/0:10,0:10:27.07:0,27,314 0/0:7,1:8:0.18:14,0,229 0/0:9,0:9:27.07:0,27,315 17 43190894 . G T 8.16 . AC=6;AF=0.071;AN=84;BaseQRankSum=-2.882;DP=284;Dels=0.00;FS=2.297;HRun=1;HaplotypeScore=0.2029;InbreedingCoeff=-0.1237;MQ=59.03;MQ0=0;MQRankSum=0.958;QD=0.25;ReadPosRankSum=0.707 GT:AD:DP:GQ:PL 0/0:5,0:5:15.02:0,15,158 0/0:7,1:8:15.03:0,15,164 0/0:3,0:3:9.02:0,9,98 0/1:3,1:4:23.47:23,0,68 0/0:6,2:8:12:0,12,118 0/0:5,0:5:9:0,9,97 0/0:4,0:4:12.04:0,12,152 0/0:5,0:5:12.03:0,12,135 0/0:7,0:7:21.06:0,21,241 0/0:7,0:7:15.04:0,15,168 0/0:4,0:4:9.03:0,9,101 0/0:10,0:10:18.02:0,18,198 0/0:5,0:5:9.02:0,9,99 0/0:4,0:4:9.03:0,9,102 0/0:12,2:14:21.03:0,21,225 0/0:1,0:1:3.01:0,3,35 0/1:4,1:5:14.67:15,0,62 0/1:9,1:10:9.43:9,0,180 0/0:18,2:20:42.07:0,42,449 0/0:14,1:15:36.07:0,36,406 0/1:8,1:9:14.44:14,0,166 0/0:9,1:10:24.04:0,24,258 0/0:7,0:7:18.05:0,18,209 0/0:1,0:1:3.01:0,3,37 0/0:5,0:5:12.04:0,12,149 0/0:3,0:3:9.02:0,9,95 0/0:3,0:3:3:0,3,28 0/1:2,1:3:17.66:18,0,55 0/0:4,0:4:8.99:0,9,82 0/0:5,1:6:15.02:0,15,161 0/0:8,0:8:12.03:0,12,130 0/0:22,0:22:60.10:0,60,644 0/0:8,1:9:24.04:0,24,246 0/1:1,1:2:22.63:23,0,28 0/0:5,0:5:12:0,12,112 0/0:6,0:6:9.03:0,9,102 0/0:4,0:4:12.03:0,12,138 0/0:6,1:7:0.55:9,0,123 0/0:10,0:10:24.06:0,24,267 0/0:4,0:4:12.03:0,12,135 0/0:5,0:5:15.02:0,15,153 0/0:7,0:7:15.04:0,15,174 17 43216472 . A G 7386.72 . AC=7;AF=0.083;AN=84;BaseQRankSum=-1.521;DP=2370;Dels=0.00;FS=5.586;HRun=2;HaplotypeScore=2.0048;InbreedingCoeff=-0.0909;MQ=58.92;MQ0=0;MQRankSum=0.864;QD=13.12;ReadPosRankSum=-0.980 GT:AD:DP:GQ:PL 0/0:45,0:46:99:0,114,1427 0/1:26,18:44:99:476,0,750 0/1:23,18:41:99:470,0,633 0/1:81,63:144:99:1640,0,2324 0/0:126,0:126:99:0,355,4488 0/1:42,50:93:99:1439,0,1227 0/1:39,35:74:99:1000,0,1180 0/0:69,0:69:99:0,193,2446 0/0:42,0:42:99:0,105,1297 0/0:27,0:27:72.22:0,72,888 0/0:33,0:33:87.26:0,87,1077 0/0:29,0:29:81.24:0,81,998 0/1:11,13:24:99:324,0,329 0/0:38,0:38:99:0,105,1296 0/0:131,0:131:99:0,349,4379 0/0:34,0:34:99:0,99,1209 0/0:40,0:40:99:0,114,1422 0/0:27,0:27:72.21:0,72,876 0/0:58,0:59:99:0,166,2040 0/0:67,0:67:99:0,184,2264 0/0:66,0:66:99:0,172,2175 0/0:49,0:49:99:0,132,1645 0/1:72,71:143:99:2038,0,2110 0/0:82,0:83:99:0,217,2762 0/0:89,0:89:99:0,244,3134 0/0:77,0:77:99:0,205,2631 0/0:32,1:34:87.27:0,87,1087 0/0:35,0:35:93.28:0,93,1149 0/0:22,0:22:60.18:0,60,745 0/0:44,0:44:99:0,117,1460 0/0:34,0:34:99:0,99,1225 0/0:69,0:69:99:0,181,2252 0/0:56,0:56:99:0,147,1823 0/0:37,0:38:99:0,108,1335 0/0:42,0:42:99:0,105,1341 0/0:45,0:45:99:0,129,1585 0/0:71,1:72:99:0,193,2417 0/0:55,1:56:99:0,141,1764 0/0:32,0:32:87.28:0,87,1098 0/0:37,0:37:99:0,99,1221 0/0:28,0:28:78.25:0,78,982 0/0:31,0:31:90.27:0,90,1127 17 43318778 . G C 7177.16 . AC=84;AF=1.000;AN=84;DP=218;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.1005;InbreedingCoeff=-0.0449;MQ=58.05;MQ0=0;QD=32.92 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:38,3,0 1/1:0,1:1:3.01:33,3,0 1/1:0,3:3:9.01:94,9,0 1/1:0,6:6:18.06:223,18,0 1/1:0,6:6:18.06:229,18,0 1/1:0,1:1:3.01:41,3,0 1/1:0,2:2:6.02:79,6,0 1/1:0,5:5:15.05:186,15,0 1/1:0,5:5:15.04:175,15,0 1/1:0,5:5:15.04:174,15,0 1/1:0,2:2:6.02:71,6,0 1/1:0,7:7:21.05:227,21,0 1/1:0,6:6:18.05:197,18,0 1/1:0,10:10:30.08:346,30,0 1/1:0,13:13:36.11:441,36,0 1/1:0,6:6:18.05:201,18,0 1/1:0,5:5:15.04:162,15,0 1/1:0,4:4:12.03:133,12,0 1/1:0,8:8:24.02:247,24,0 1/1:0,10:10:30.08:339,30,0 1/1:0,7:7:21.06:236,21,0 1/1:0,6:6:12.03:133,12,0 1/1:0,9:9:27.06:316,27,0 1/1:0,5:5:12.03:142,12,0 1/1:0,11:11:30.10:393,30,0 1/1:0,4:4:12.02:136,12,0 1/1:0,5:5:12.03:136,12,0 1/1:0,2:2:6.02:71,6,0 1/1:0,2:2:5.99:53,6,0 1/1:0,6:6:15.04:181,15,0 1/1:0,8:8:24.07:272,24,0 1/1:0,4:4:9.03:111,9,0 1/1:0,2:2:3.01:30,3,0 1/1:0,2:2:6.02:66,6,0 1/1:0,2:2:6.02:69,6,0 1/1:0,8:8:24.07:280,24,0 1/1:0,1:1:2.98:22,3,0 1/1:0,4:4:12.03:133,12,0 1/1:0,6:6:18.01:175,18,0 1/1:1,8:9:24.07:276,24,0 1/1:0,3:3:9.02:104,9,0 1/1:0,6:6:18.05:206,18,0 17 43318779 . C G 6916.31 . AC=84;AF=1.000;AN=84;DP=212;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=0.1005;InbreedingCoeff=-0.0467;MQ=57.99;MQ0=0;QD=32.62 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:32,3,0 1/1:0,2:2:6.02:65,6,0 1/1:0,3:3:9.02:102,9,0 1/1:0,5:5:15.05:185,15,0 1/1:0,6:6:18.05:212,18,0 1/1:0,1:1:3.01:35,3,0 1/1:0,2:2:3.01:37,3,0 1/1:0,5:5:15.05:184,15,0 1/1:0,4:4:12.03:130,12,0 1/1:0,5:5:15.04:180,15,0 1/1:0,2:2:6:60,6,0 1/1:0,7:7:21.06:240,21,0 1/1:0,6:6:18.06:226,18,0 1/1:0,10:10:30.09:354,30,0 1/1:0,13:13:36.09:411,36,0 1/1:0,6:6:18.05:202,18,0 1/1:0,4:4:12.04:149,12,0 1/1:0,3:3:9.03:108,9,0 1/1:1,8:9:21.03:231,21,0 1/1:0,9:9:27.06:319,27,0 1/1:0,7:7:21.05:250,21,0 1/1:0,5:5:9.03:107,9,0 1/1:0,9:9:24.05:276,24,0 1/1:0,5:5:9.03:112,9,0 1/1:0,11:11:30.09:370,30,0 1/1:0,4:4:12.04:147,12,0 1/1:0,5:5:15.04:170,15,0 1/1:0,2:2:6.02:66,6,0 1/1:0,2:2:6.02:68,6,0 1/1:0,4:4:12.03:138,12,0 1/1:0,8:8:24.06:279,24,0 1/1:0,4:4:12.03:138,12,0 1/1:0,2:2:6.02:68,6,0 1/1:0,2:2:6.02:72,6,0 1/1:0,2:2:6.02:64,6,0 1/1:0,8:8:24.06:268,24,0 1/1:0,2:2:5.97:44,6,0 1/1:0,4:4:12.03:131,12,0 1/1:0,6:6:15.01:152,15,0 1/1:1,7:8:21.05:227,21,0 1/1:0,3:3:9.02:96,9,0 1/1:0,6:6:18.05:211,18,0 17 43324334 . G T 50.35 . AC=8;AF=0.105;AN=76;BaseQRankSum=-2.852;DP=274;Dels=0.00;FS=20.680;HRun=1;HaplotypeScore=0.5988;InbreedingCoeff=-0.0778;MQ=57.79;MQ0=0;MQRankSum=-0.191;QD=0.73;ReadPosRankSum=-1.546 GT:AD:DP:GQ:PL 0/1:6,1:7:9.68:10,0,114 ./. 0/1:8,1:9:14.20:14,0,187 0/1:9,2:11:8.65:9,0,141 0/1:7,2:9:14.67:15,0,72 0/0:5,2:7:1.05:6,0,160 0/0:4,0:4:9.03:0,9,118 0/0:2,1:3:6.02:0,6,74 0/0:5,0:5:9.01:0,9,99 0/1:7,2:9:8.43:8,0,236 0/0:5,0:5:12.04:0,12,147 0/0:2,1:3:3.01:0,3,38 0/0:2,2:4:3.01:0,3,32 0/0:5,2:7:12.01:0,12,127 0/0:14,3:17:30.05:0,30,347 0/0:8,1:9:15.04:0,15,177 0/0:6,0:6:18.06:0,18,224 0/1:5,2:7:51.58:52,0,109 ./. 0/1:11,2:13:14.19:14,0,189 0/1:2,2:4:1.76:31,3,0 0/0:13,0:13:18.02:0,18,187 0/0:10,1:11:21.06:0,21,261 0/0:3,0:3:6.01:0,6,68 0/0:4,0:4:9.02:0,9,105 0/0:9,2:11:21.05:0,21,245 0/0:3,0:3:9.03:0,9,112 0/0:2,0:2:3.01:0,3,35 0/0:4,2:6:12.04:0,12,141 0/0:3,0:3:9.03:0,9,116 0/0:4,1:5:12.03:0,12,142 0/0:5,1:6:15.05:0,15,187 0/0:5,1:6:0.69:8,0,108 ./. 0/0:8,0:8:12.04:0,12,152 0/0:3,0:3:3.01:0,3,40 0/0:7,0:7:15.05:0,15,190 0/0:4,1:5:9:0,9,99 0/0:8,1:9:18.05:0,18,215 0/0:10,2:12:25.61:0,26,295 ./. 0/0:5,0:5:9.02:0,9,106 17 43482021 . C T 84.60 . AC=9;AF=0.107;AN=84;BaseQRankSum=-10.431;DP=1213;Dels=0.00;FS=491.544;HRun=2;HaplotypeScore=1.3664;InbreedingCoeff=-0.1606;MQ=58.86;MQ0=0;MQRankSum=0.799;QD=0.39;ReadPosRankSum=-11.126 GT:AD:DP:GQ:PL 0/0:15,3:18:1.97:2,0,267 0/1:23,7:30:8.58:9,0,545 0/0:17,4:21:14.14:0,14,507 0/0:53,12:65:66.39:0,66,1421 0/0:32,9:41:2.12:2,0,897 0/0:24,8:32:63.19:0,63,799 0/0:23,3:26:24.48:0,24,574 0/0:27,7:35:50.54:0,51,890 0/0:13,6:19:15.42:0,15,438 0/0:15,1:16:36.09:0,36,434 0/1:21,5:26:28.45:28,0,562 0/1:12,7:19:20.97:21,0,390 0/0:23,5:28:53.04:0,53,586 0/0:28,4:32:2.81:0,0,804 0/0:66,15:81:96.04:0,96,1809 0/0:20,2:22:60.15:0,60,713 0/0:21,1:22:18.63:0,19,549 0/0:28,7:35:31.92:0,32,886 0/0:24,2:26:60.14:0,60,665 0/0:32,2:34:75.24:0,75,962 0/1:21,6:27:7.34:7,0,549 0/0:15,0:15:36.11:0,36,451 0/0:47,8:55:85.80:0,86,1404 0/0:24,2:26:33.46:0,33,666 0/0:30,5:35:45.50:0,46,838 0/0:29,3:32:49.62:0,50,942 0/1:17,5:22:18.98:19,0,403 0/0:15,2:17:12.38:0,12,373 0/1:15,3:18:14.23:14,0,338 0/1:16,2:19:18.09:18,0,415 0/0:22,2:24:54.16:0,54,670 0/0:41,3:44:67.93:0,68,1213 0/0:23,7:30:38.28:0,38,630 0/0:17,3:20:1.22:5,0,498 0/0:22,3:25:36.46:0,36,634 0/1:22,7:30:50.23:50,0,571 0/0:17,4:21:4.32:0,4,433 0/1:19,5:24:32.63:33,0,503 0/0:22,3:25:61.06:0,61,754 0/0:20,5:25:20.06:0,20,563 0/0:22,5:27:31.97:0,32,630 0/0:18,6:24:15.59:0,16,476 17 44067382 . T C 65613.55 . AC=21;AF=0.250;AN=84;BaseQRankSum=54.107;DP=7183;DS;Dels=0.00;FS=18.923;HRun=0;HaplotypeScore=2.8611;InbreedingCoeff=0.1746;MQ=59.53;MQ0=0;MQRankSum=1.796;QD=21.34;ReadPosRankSum=0.206 GT:AD:DP:GQ:PL 0/0:143,0:143:99:0,409,4754 0/0:136,0:136:99:0,370,4355 0/1:64,82:146:99:2549,0,1723 0/0:217,0:217:99:0,623,7168 0/0:238,1:239:99:0,644,7904 0/0:239,1:240:99:0,692,8216 0/0:190,1:191:99:0,526,6209 0/0:195,1:196:99:0,508,6297 0/1:84,87:171:99:2674,0,2162 1/1:0,146:146:99:5258,418,0 0/0:140,0:140:99:0,406,4668 0/0:128,0:129:99:0,358,4202 0/0:135,0:135:99:0,376,4406 0/1:69,76:145:99:2378,0,1868 0/0:249,0:250:99:0,692,7862 0/0:133,0:133:99:0,370,4239 0/0:149,0:149:99:0,415,4813 0/1:74,78:152:99:2355,0,2060 0/1:132,105:237:99:3082,0,3719 0/0:213,0:215:99:0,602,7076 0/1:93,141:234:99:4254,0,2453 0/0:205,0:206:99:0,560,6490 0/0:224,0:224:99:0,650,7504 1/1:0,219:219:99:8422,614,0 0/1:89,109:198:99:3530,0,2434 1/1:1,217:218:99:8198,575,0 0/0:114,0:114:99:0,325,3754 0/1:60,76:136:99:2305,0,1662 0/0:108,0:108:99:0,301,3491 0/0:123,0:123:99:0,331,3891 0/0:153,0:153:99:0,430,4988 1/1:0,197:197:99:7141,551,0 0/1:88,81:169:99:2509,0,2333 0/0:137,0:137:99:0,403,4730 0/0:116,1:117:99:0,295,3826 0/0:144,0:144:99:0,412,4798 0/1:113,118:232:99:3638,0,2985 0/0:146,1:147:99:0,375,4702 0/1:62,65:128:99:1988,0,1592 0/1:85,97:182:99:3027,0,2329 0/0:120,3:123:99:0,239,3847 0/1:90,74:164:99:2305,0,2531 17 44067400 . T C 44252.50 . AC=24;AF=0.286;AN=84;BaseQRankSum=28.066;DP=6207;DS;Dels=0.00;FS=1.806;HRun=3;HaplotypeScore=2.6319;InbreedingCoeff=-0.0500;MQ=59.50;MQ0=0;MQRankSum=3.167;QD=16.10;ReadPosRankSum=-4.428 GT:AD:DP:GQ:PL 0/1:61,54:115:99:1661,0,1756 0/1:65,56:121:99:1677,0,1936 0/1:70,55:126:99:1697,0,2018 0/0:213,0:214:99:0,614,7431 0/0:195,0:195:99:0,563,6886 0/0:195,0:195:99:0,566,7038 0/0:153,1:154:99:0,391,5263 0/0:148,0:149:99:0,430,5256 0/0:133,0:133:99:0,382,4580 0/0:121,0:121:99:0,343,4109 0/0:113,0:113:99:0,334,3979 0/1:67,44:111:99:1314,0,1953 0/0:105,2:107:99:0,230,3522 0/1:81,49:131:99:1368,0,2510 0/1:121,111:233:99:2967,0,3457 0/1:43,54:97:99:1633,0,1245 1/1:1,123:124:99:4346,320,0 0/0:126,0:127:99:0,364,4365 0/0:228,0:228:99:0,620,7516 0/0:215,0:215:99:0,605,7328 0/1:123,102:225:99:2800,0,3596 0/1:74,77:151:99:2246,0,2102 0/1:100,110:210:99:3525,0,3031 0/0:189,0:189:99:0,548,6645 0/0:181,0:182:99:0,524,6398 0/0:173,0:173:99:0,506,6154 1/1:2,95:97:99:3345,232,0 0/1:66,47:113:99:1342,0,1953 1/1:2,101:103:99:3585,224,0 0/1:54,52:106:99:1524,0,1523 0/1:59,57:116:99:1725,0,1739 0/0:207,0:207:99:0,578,7057 0/0:134,0:134:99:0,379,4586 0/1:70,45:115:99:1303,0,2018 0/1:56,49:105:99:1309,0,1699 0/1:69,49:118:99:1481,0,2029 0/0:231,0:231:99:0,650,7850 0/0:126,2:128:99:0,320,4245 0/0:114,0:114:99:0,331,3953 0/0:148,0:149:99:0,415,5023 0/1:57,45:102:99:1322,0,1656 0/1:64,66:130:99:2084,0,1836 17 44068924 . G A 32418.97 . AC=24;AF=0.286;AN=84;BaseQRankSum=-21.623;DP=4889;DS;Dels=0.00;FS=37.064;HRun=0;HaplotypeScore=3.3308;InbreedingCoeff=-0.0500;MQ=59.21;MQ0=0;MQRankSum=1.207;QD=14.96;ReadPosRankSum=-2.929 GT:AD:DP:GQ:PL 0/1:35,34:69:99:840,0,980 0/1:53,52:105:99:1375,0,1479 0/1:29,33:62:99:814,0,827 0/0:211,0:212:99:0,539,7030 0/0:181,0:182:99:0,494,6470 0/0:168,1:169:99:0,430,5588 0/0:136,0:136:99:0,379,4797 0/0:154,0:156:99:0,415,5365 0/0:89,0:89:99:0,250,2996 0/0:79,0:79:99:0,220,2657 0/0:72,1:73:99:0,173,2400 0/1:37,55:93:99:1479,0,934 0/0:51,0:51:99:0,144,1720 0/1:37,53:91:99:1460,0,1063 0/1:123,109:237:99:2699,0,3195 0/1:50,43:93:99:1122,0,1406 1/1:0,80:85:99:2554,225,0 0/0:95,0:95:99:0,259,3106 0/0:174,0:174:99:0,436,5276 0/0:170,1:173:99:0,435,5555 0/1:83,81:169:99:2073,0,2112 0/1:52,51:104:99:1436,0,1466 0/1:94,116:210:99:3049,0,2778 0/0:129,0:129:99:0,349,4509 0/0:153,0:153:99:0,400,5187 0/0:140,1:141:99:0,320,4564 1/1:1,71:73:99:2158,166,0 0/1:32,42:76:99:1132,0,789 1/1:2,70:73:99:2165,192,0 0/1:41,48:89:99:1210,0,1043 0/1:48,44:93:99:1092,0,1333 0/0:150,0:151:99:0,403,4797 0/0:115,0:115:99:0,292,3545 0/1:51,53:105:99:1317,0,1503 0/1:36,37:73:99:956,0,1035 0/1:45,46:94:99:1174,0,1256 0/0:174,0:176:99:0,442,5344 0/0:71,0:71:99:0,187,2228 0/0:86,0:86:99:0,238,2778 0/0:108,2:111:99:0,257,3601 0/1:50,34:84:99:901,0,1419 0/1:39,50:89:99:1412,0,1071 17 44144993 . C G 126310.64 . AC=84;AF=1.000;AN=84;DP=3569;DS;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=1.4347;InbreedingCoeff=-0.0000;MQ=59.38;MQ0=0;QD=35.39 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2653,208,0 1/1:0,86:86:99:2974,232,0 1/1:0,77:77:99:2792,220,0 1/1:0,137:137:99:4961,367,0 1/1:0,126:126:99:4623,343,0 1/1:0,103:103:99:3878,295,0 1/1:0,103:103:99:4000,295,0 1/1:0,108:108:99:3752,277,0 1/1:0,73:73:99:2525,196,0 1/1:0,63:63:99:2157,169,0 1/1:0,72:72:99:2589,202,0 1/1:0,69:69:99:2418,190,0 1/1:0,67:67:99:2281,181,0 1/1:0,70:70:99:2356,181,0 1/1:0,208:208:99:7163,557,0 1/1:0,56:56:99:2068,162,0 1/1:0,83:83:99:2927,235,0 1/1:0,85:86:99:2994,235,0 1/1:0,65:65:99:2333,184,0 1/1:0,63:63:99:2160,172,0 1/1:0,99:99:99:3434,271,0 1/1:0,63:63:99:2252,178,0 1/1:0,147:148:99:5239,385,0 1/1:0,101:101:99:3745,277,0 1/1:0,119:119:99:4251,316,0 1/1:0,88:88:99:3266,241,0 1/1:0,48:48:99:1658,129,0 1/1:0,81:81:99:2905,229,0 1/1:0,57:57:99:2112,166,0 1/1:0,67:67:99:2523,199,0 1/1:0,60:60:99:2200,172,0 1/1:0,101:101:99:3371,265,0 1/1:0,55:55:99:1928,150,0 1/1:0,68:68:99:2311,184,0 1/1:0,86:86:99:2855,223,0 1/1:0,83:83:99:2888,226,0 1/1:0,89:89:99:2988,235,0 1/1:0,95:95:99:3271,253,0 1/1:0,65:65:99:2344,184,0 1/1:0,74:74:99:2583,202,0 1/1:0,72:72:99:2382,187,0 1/1:0,59:59:99:2202,175,0 17 44623629 . C T 51.68 . AC=8;AF=0.200;AN=40;BaseQRankSum=-3.916;DP=8430;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.1433;InbreedingCoeff=0.0738;MQ=2.41;MQ0=8178;MQRankSum=1.398;QD=0.05;ReadPosRankSum=-0.760 GT:AD:DP:GQ:PL ./. 0/0:220,23:243:3:0,3,25 ./. 0/0:201,41:243:2.99:0,3,24 1/1:198,45:243:2.99:24,3,0 ./. ./. ./. ./. ./. ./. 1/1:155,23:178:2.99:24,3,0 0/0:97,9:106:2.99:0,3,24 ./. ./. 0/0:170,20:190:2.99:0,3,24 ./. 0/0:100,8:109:2.99:0,3,24 ./. 0/1:187,62:250:38.37:38,0,38 0/0:224,15:240:2.99:0,3,24 ./. 0/0:201,47:248:5.98:0,6,47 ./. 0/0:108,15:123:2.99:0,3,24 0/0:136,28:164:2.99:0,3,24 ./. 0/0:143,19:162:2.98:0,3,22 0/0:192,25:217:2.99:0,3,24 ./. 0/0:196,28:224:2.99:0,3,24 ./. ./. ./. 1/1:158,26:184:2.99:24,3,0 ./. 0/0:187,9:199:2.99:0,3,24 ./. 0/1:173,22:196:17.70:18,0,18 0/0:227,23:250:2.99:0,3,24 ./. 0/0:206,26:232:5.97:0,6,45 17 44632540 . T C 9779.70 . AC=78;AF=0.951;AN=82;BaseQRankSum=7.025;DP=4619;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5151;InbreedingCoeff=-0.0704;MQ=7.89;MQ0=3805;MQRankSum=0.090;QD=2.20;ReadPosRankSum=-1.031 GT:AD:DP:GQ:PL 1/1:68,70:138:26.99:235,27,0 1/1:49,45:94:12:107,12,0 1/1:19,88:107:3.34:216,3,0 0/1:151,99:250:97.04:334,0,97 0/1:153,96:249:99:260,0,149 1/1:0,63:63:21.01:187,21,0 1/1:0,103:103:33:290,33,0 1/1:0,69:69:24:211,24,0 1/1:52,34:86:21.01:187,21,0 1/1:0,71:71:18.01:160,18,0 1/1:56,50:106:27.01:240,27,0 1/1:0,89:89:30.01:270,30,0 1/1:0,51:51:15:133,15,0 1/1:35,59:94:18.01:160,18,0 1/1:0,248:249:90.03:800,90,0 1/1:0,88:88:36.01:320,36,0 1/1:0,128:128:48.02:430,48,0 1/1:0,41:41:15:133,15,0 1/1:58,40:99:9:80,9,0 ./. 1/1:0,123:123:51.02:453,51,0 1/1:0,96:96:32.99:288,33,0 1/1:0,235:235:96.04:857,96,0 1/1:61,37:98:6:53,6,0 1/1:0,70:70:15:133,15,0 1/1:61,30:91:12:107,12,0 1/1:2,97:99:21.01:187,21,0 1/1:0,90:90:24.01:213,24,0 1/1:0,117:117:33.01:293,33,0 1/1:0,89:89:36.01:320,36,0 1/1:0,97:97:33.01:293,33,0 1/1:0,123:123:42:369,42,0 1/1:45,15:60:3:27,3,0 1/1:36,56:92:15:133,15,0 1/1:40,52:92:21.01:187,21,0 1/1:28,74:102:24.01:213,24,0 1/1:46,38:84:18.01:163,18,0 1/1:31,50:81:12:107,12,0 0/1:60,22:82:50.02:50,0,157 0/1:98,24:122:41.35:41,0,41 1/1:57,60:117:30.01:267,30,0 1/1:15,101:116:11.32:269,11,0 17 44632550 . G A 36.70 . AC=1;AF=0.012;AN=82;BaseQRankSum=-3.805;DP=4950;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4265;InbreedingCoeff=-0.0204;MQ=8.16;MQ0=4030;MQRankSum=1.067;QD=0.52;ReadPosRankSum=0.728 GT:AD:DP:GQ:PL 0/0:143,0:143:26.99:0,27,238 0/0:110,0:110:15:0,15,133 0/0:112,0:112:36.02:0,36,323 0/0:249,0:249:66.02:0,66,587 0/0:250,0:250:66.01:0,66,583 0/0:58,1:59:23.99:0,24,208 0/0:122,0:122:42.01:0,42,371 0/0:78,0:79:33.01:0,33,291 0/0:90,0:90:24.01:0,24,213 0/0:83,0:83:24.01:0,24,213 0/0:103,0:103:24.01:0,24,213 0/0:97,0:97:39.02:0,39,350 0/0:57,0:57:27.01:0,27,240 0/0:106,0:107:18.01:0,18,160 0/0:246,0:246:96.03:0,96,854 0/0:102,0:102:51.02:0,51,453 0/0:134,0:134:54.01:0,54,479 0/0:44,0:44:18.01:0,18,160 0/0:109,0:109:15:0,15,133 ./. 0/0:137,0:137:66.03:0,66,590 0/0:103,0:103:35.99:0,36,315 0/0:249,0:250:99:0,99,880 0/0:106,0:106:6:0,6,53 0/1:41,30:71:82.69:83,0,83 0/0:96,0:96:21.01:0,21,187 0/0:101,0:103:33.01:0,33,293 0/0:96,0:96:21.01:0,21,187 0/0:125,0:125:51.02:0,51,453 0/0:105,0:105:39.01:0,39,347 0/0:112,0:113:45.01:0,45,400 0/0:141,0:141:39.01:0,39,347 0/0:64,0:64:3:0,3,27 0/0:105,0:105:21.01:0,21,187 0/0:105,0:105:33.01:0,33,293 0/0:107,0:107:33.01:0,33,293 0/0:101,0:101:18.01:0,18,163 0/0:83,0:83:12:0,12,107 0/0:90,0:90:27.01:0,27,240 0/0:133,0:133:18.01:0,18,160 0/0:126,0:126:33.01:0,33,293 0/0:122,0:122:30:0,30,265 17 44791322 . T C 603.06 . 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G T 5758.81 . 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A G 22587.61 . 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G A 125.58 . 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G T 83.31 . 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G C 14563.08 . 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C T 90.74 . 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A T 62.73 . AC=2;AF=0.024;AN=84;BaseQRankSum=-13.591;DP=4050;DS;Dels=0.00;FS=7.167;HRun=0;HaplotypeScore=2.8509;InbreedingCoeff=-0.0258;MQ=43.15;MQ0=139;MQRankSum=-7.031;QD=0.39;ReadPosRankSum=-0.078 GT:AD:DP:GQ:PL 0/1:72,10:82:41.06:41,0,1658 0/0:84,2:86:99:0,147,1836 0/0:70,3:73:99:0,122,1887 0/0:162,4:166:99:0,315,4767 0/0:144,1:145:99:0,367,4436 0/0:155,5:160:99:0,234,4383 0/0:115,5:120:99:0,184,3278 0/0:128,4:132:99:0,236,3601 0/0:60,1:61:99:0,117,1535 0/0:95,6:101:99:0,131,2059 0/0:59,4:63:25.39:0,25,1371 0/0:51,3:54:60.84:0,61,1088 0/0:65,3:68:96.03:0,96,1609 0/0:76,1:77:99:0,159,1783 0/0:221,9:230:99:0,276,5410 0/0:53,3:56:76.89:0,77,1274 0/0:97,7:104:99:0,113,2225 0/0:92,5:97:75.38:0,75,2248 0/0:104,4:108:99:0,180,2413 0/1:70,9:79:84.02:84,0,1703 0/0:92,6:98:99:0,103,2165 0/0:52,2:54:89.86:0,90,1340 0/0:141,6:147:99:0,194,3762 0/0:126,5:131:99:0,214,3436 0/0:136,4:140:99:0,233,3729 0/0:161,5:166:99:0,249,4371 0/0:41,4:45:49.85:0,50,1014 0/0:71,3:74:56.92:0,57,1549 0/0:70,6:76:17.60:0,18,1508 0/0:69,8:77:10.04:0,10,1429 0/0:80,1:81:99:0,153,2077 0/0:96,5:101:99:0,137,2445 0/0:64,1:65:99:0,123,1630 0/0:76,5:81:52.55:0,53,1690 0/0:69,6:75:38.36:0,38,1728 0/0:86,4:90:99:0,108,2004 0/0:93,4:97:97.80:0,98,1943 0/0:70,3:73:75.64:0,76,1624 0/0:70,4:74:99:0,142,1890 0/0:86,6:92:57.50:0,58,1909 0/0:72,0:72:99:0,180,2003 0/0:74,5:79:99:0,102,1849 17 45234386 . G T 6.80 . 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CA C 35563.56 . 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G T 7.79 . 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A G 16740.03 . 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T G 18934.20 . 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G A 10430.61 . AC=42;AF=0.500;AN=84;BaseQRankSum=-25.970;DP=2736;Dels=0.00;FS=162.345;HRun=1;HaplotypeScore=1.4413;InbreedingCoeff=-1.0000;MQ=43.50;MQ0=267;MQRankSum=-37.437;QD=3.81;ReadPosRankSum=0.526 GT:AD:DP:GQ:PL 0/1:24,22:46:99:189,0,693 0/1:38,33:71:99:174,0,1058 0/1:34,22:56:95.75:96,0,922 0/1:52,36:88:99:516,0,1554 0/1:57,31:88:99:442,0,1881 0/1:66,40:106:99:421,0,2016 0/1:59,20:79:99:116,0,1800 0/1:76,34:110:99:207,0,2237 0/1:29,18:47:99:175,0,802 0/1:19,31:50:99:304,0,503 0/1:28,17:45:99:116,0,855 0/1:15,19:34:81.81:82,0,466 0/1:27,22:49:99:184,0,808 0/1:32,25:57:84.71:85,0,982 0/1:86,74:160:99:812,0,2295 0/1:22,24:46:99:113,0,661 0/1:31,32:63:99:293,0,833 0/1:24,27:51:99:177,0,661 0/1:36,33:69:99:344,0,925 0/1:30,30:60:99:257,0,830 0/1:53,46:99:99:563,0,1384 0/1:12,24:36:99:234,0,329 0/1:63,46:109:99:567,0,1934 0/1:49,42:91:99:416,0,1413 0/1:57,30:87:99:155,0,1813 0/1:57,33:90:99:198,0,1842 0/1:19,17:36:83.54:84,0,485 0/1:22,29:51:99:256,0,633 0/1:13,28:41:99:244,0,400 0/1:19,28:47:99:200,0,558 0/1:35,26:61:99:233,0,989 0/1:41,29:70:99:304,0,986 0/1:23,30:53:99:157,0,572 0/1:26,25:51:99:139,0,689 0/1:26,22:48:99:129,0,734 0/1:31,30:62:99:241,0,856 0/1:41,30:71:99:253,0,977 0/1:23,28:51:99:148,0,627 0/1:23,22:45:99:190,0,738 0/1:18,32:50:99:349,0,472 0/1:35,21:56:99:146,0,1022 0/1:33,23:56:99:123,0,907 17 45234484 . T C 16.73 . AC=1;AF=0.012;AN=84;BaseQRankSum=9.393;DP=1778;Dels=0.00;FS=4.962;HRun=0;HaplotypeScore=0.5890;InbreedingCoeff=-0.0406;MQ=46.71;MQ0=58;MQRankSum=-9.593;QD=0.64;ReadPosRankSum=-5.825 GT:AD:DP:GQ:PL 0/0:21,4:25:20.68:0,21,565 0/0:45,2:47:81.17:0,81,938 0/0:32,2:34:60.18:0,60,740 0/0:60,1:61:99:0,120,1823 0/0:53,3:57:99:0,138,1766 0/0:71,3:74:99:0,120,1915 0/0:54,0:54:99:0,126,1597 0/0:54,2:56:95.68:0,96,1446 0/0:33,2:35:48.52:0,49,834 0/0:31,1:32:21.58:0,22,643 0/0:26,2:28:63.19:0,63,768 0/0:15,2:17:33.10:0,33,394 0/0:24,4:28:1.76:0,2,703 0/0:44,2:46:44.79:0,45,892 0/0:92,10:102:33.79:0,34,2290 0/1:22,4:26:60.97:61,0,344 0/0:40,5:45:13.45:0,13,900 0/0:32,4:36:50.46:0,50,792 0/0:40,2:42:81.25:0,81,1002 0/0:33,2:35:81.25:0,81,998 0/0:63,1:64:99:0,102,1553 0/0:19,1:20:36.08:0,36,414 0/0:61,4:65:99:0,141,1772 0/0:50,1:51:99:0,114,1426 0/0:57,1:58:99:0,117,1481 0/0:62,4:66:99:0,144,1809 0/0:24,0:24:54.05:0,54,593 0/0:39,2:41:50.80:0,51,955 0/0:22,0:22:33.07:0,33,381 0/0:32,2:34:66.18:0,66,788 0/0:35,1:36:84.22:0,84,998 0/0:45,1:46:47.81:0,48,940 0/0:28,3:31:17.68:0,18,535 0/0:32,3:35:0.47:9,0,613 0/0:30,1:31:75.22:0,75,896 0/0:40,1:41:57.59:0,58,977 0/0:44,1:45:78.22:0,78,948 0/0:25,3:28:42.10:0,42,493 0/0:36,1:37:53.88:0,54,987 0/0:39,1:40:66.08:0,66,732 0/0:44,4:48:63.72:0,64,1186 0/0:30,5:35:0.45:10,0,623 17 45360730 . T C 3013.89 . AC=8;AF=0.095;AN=84;BaseQRankSum=0.842;DP=1724;Dels=0.00;FS=0.898;HRun=1;HaplotypeScore=1.1942;InbreedingCoeff=-0.1053;MQ=59.16;MQ0=0;MQRankSum=1.284;QD=11.59;ReadPosRankSum=0.213 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,117,1476 0/0:33,0:33:87.27:0,87,1091 0/0:25,1:26:69.22:0,69,875 0/0:69,0:69:99:0,193,2455 0/0:41,0:41:99:0,114,1461 0/0:46,0:46:99:0,120,1577 0/0:48,1:49:99:0,123,1620 0/1:27,17:44:99:505,0,794 0/0:30,0:30:87.27:0,87,1086 0/0:30,0:30:87.28:0,87,1092 0/0:41,1:42:93.66:0,94,1406 0/1:16,13:29:99:369,0,477 0/0:28,0:28:81.24:0,81,982 0/1:12,20:32:99:479,0,376 0/0:108,0:108:99:0,304,3792 0/0:31,0:31:90.28:0,90,1125 0/1:13,7:20:99:168,0,393 0/0:38,0:38:96.30:0,96,1211 0/0:70,0:70:99:0,177,2204 0/0:49,0:49:99:0,138,1711 0/0:65,0:65:99:0,181,2259 0/0:45,0:45:99:0,126,1520 0/0:68,0:68:99:0,187,2387 0/0:36,0:36:99:0,105,1315 0/0:44,0:44:99:0,120,1551 0/0:30,0:30:87.28:0,87,1102 0/1:14,8:23:99:205,0,450 0/1:18,16:34:99:408,0,513 0/0:30,0:30:81.24:0,81,1020 0/0:37,1:38:99:0,105,1318 0/0:38,0:38:99:0,102,1300 0/1:25,24:50:99:726,0,695 0/0:50,0:50:99:0,132,1655 0/0:31,0:31:90.28:0,90,1118 0/0:32,0:32:87.27:0,87,1090 0/0:38,0:38:99:0,102,1289 0/0:61,0:61:99:0,156,1958 0/0:30,0:30:84.27:0,84,1060 0/1:18,10:28:99:275,0,489 0/0:37,0:37:99:0,108,1336 0/0:28,0:28:72.22:0,72,903 0/0:30,0:30:87.28:0,87,1095 17 45490251 . C T 12653.24 . AC=12;AF=0.143;AN=84;BaseQRankSum=-27.265;DP=3408;Dels=0.00;FS=2.902;HRun=2;HaplotypeScore=1.0947;InbreedingCoeff=0.2199;MQ=59.54;MQ0=0;MQRankSum=-0.332;QD=15.15;ReadPosRankSum=-1.705 GT:AD:DP:GQ:PL 0/0:69,0:69:99:0,181,2342 0/1:34,34:68:99:882,0,1010 1/1:1,60:61:99:1967,132,0 0/0:136,0:136:99:0,343,4726 0/0:143,0:143:99:0,361,5044 0/0:145,0:145:99:0,385,5258 0/0:119,0:119:99:0,295,4056 0/0:115,0:115:99:0,304,4195 0/0:57,0:57:99:0,166,2120 0/1:35,26:61:99:625,0,1077 0/0:61,0:61:99:0,175,2232 0/0:62,0:62:99:0,169,2148 0/0:52,0:52:99:0,141,1811 0/0:44,1:45:90.27:0,90,1550 0/0:235,0:235:99:0,599,7811 0/0:38,0:38:96.31:0,96,1260 0/0:63,0:63:99:0,181,2293 0/1:19,37:56:99:1087,0,546 0/0:78,0:78:99:0,205,2656 0/0:69,0:69:99:0,178,2303 0/0:91,0:91:99:0,241,3132 0/0:55,0:55:99:0,144,1857 0/1:95,69:164:99:1791,0,2748 0/1:70,66:136:99:1774,0,2135 0/0:127,0:127:99:0,328,4539 0/1:48,59:107:99:1565,0,1507 0/0:42,0:42:99:0,120,1531 0/0:54,0:54:99:0,153,1949 0/0:63,0:63:99:0,172,2195 0/0:73,0:73:99:0,205,2597 0/0:50,0:50:99:0,144,1844 0/0:76,0:76:99:0,193,2542 0/0:42,0:42:99:0,105,1379 0/1:32,30:62:99:817,0,980 1/1:4,49:53:18.03:1485,18,0 0/0:61,1:63:99:0,138,2167 0/0:87,0:87:99:0,226,2873 0/1:41,26:67:99:660,0,1215 0/0:54,0:54:99:0,153,1931 0/0:70,0:70:99:0,196,2492 0/0:64,2:66:99:0,127,2160 0/0:73,0:73:99:0,199,2556 17 45608816 . C T 49.37 . AC=1;AF=0.016;AN=62;BaseQRankSum=0.396;DP=333;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=3.6290;InbreedingCoeff=0.1643;MQ=15.63;MQ0=180;MQRankSum=1.918;QD=4.11;ReadPosRankSum=1.739 GT:AD:DP:GQ:PL ./. ./. 0/0:4,0:4:8.98:0,9,72 0/0:16,0:16:18:0,18,170 0/0:16,0:16:8.99:0,9,76 0/0:6,0:6:9.01:0,9,93 0/0:10,0:10:11.98:0,12,99 0/0:11,0:11:3:0,3,25 0/0:1,0:1:3:0,3,25 ./. 0/0:5,0:5:6:0,6,51 0/0:6,0:6:3.01:0,3,39 ./. ./. 0/0:22,0:22:11.97:0,12,97 ./. 0/0:9,0:9:3:0,3,25 0/0:8,0:8:9.01:0,9,91 ./. 0/0:15,0:15:15:0,15,147 0/0:7,0:7:6.02:0,6,73 0/0:14,0:14:18.02:0,18,187 0/0:19,0:19:26.97:0,27,235 0/0:6,0:6:3:0,3,25 0/0:8,0:8:5.99:0,6,49 0/0:6,0:6:6.01:0,6,64 0/0:5,0:5:3.01:0,3,30 ./. 0/0:5,0:5:3.01:0,3,36 0/0:3,0:3:3.01:0,3,30 ./. 0/1:9,3:12:0.51:102,9,0 0/0:18,0:18:24.02:0,24,250 0/0:7,0:7:8.98:0,9,73 0/0:6,0:6:9.02:0,9,96 0/0:10,0:10:11.98:0,12,98 0/0:15,0:15:15.01:0,15,154 ./. ./. 0/0:2,0:2:3:0,3,25 0/0:3,0:3:5.99:0,6,49 0/0:7,0:7:9:0,9,88 17 45608816 . CTTCGAGCGGCTG C 332.88 . AC=5;AF=0.078;AN=64;BaseQRankSum=4.831;DP=333;FS=93.676;HRun=0;HaplotypeScore=30.2307;InbreedingCoeff=0.0120;MQ=15.82;MQ0=178;MQRankSum=2.269;QD=9.51;ReadPosRankSum=-2.779 GT:AD:DP:GQ:PL ./. ./. 0/0:4,0:3:9.03:0,9,545 0/0:16,0:6:18.06:0,18,1135 0/0:16,0:3:9.03:0,9,540 0/0:6,0:3:9.03:0,9,516 0/0:10,0:4:12.04:0,12,759 0/0:11,0:1:3.01:0,3,190 0/0:1,0:1:3.01:0,3,190 ./. 0/0:5,0:2:6.02:0,6,356 0/0:6,0:1:3.01:0,3,190 ./. ./. 0/0:23,0:5:15.05:0,15,834 ./. 0/0:9,0:1:3.01:0,3,190 0/1:6,2:3:99:116,0,180 0/0:9,0:1:3.01:0,3,199 0/0:16,0:6:18.06:0,18,1145 1/1:4,2:2:6.02:117,6,0 0/0:14,0:6:18.06:0,18,1112 0/0:19,0:9:27.09:0,27,1677 0/0:6,0:1:3.01:0,3,190 0/0:8,0:2:6.02:0,6,345 0/0:6,0:2:6.02:0,6,380 0/0:5,0:1:3.01:0,3,189 ./. 0/0:5,0:1:3.01:0,3,190 0/0:3,0:1:3.01:0,3,189 ./. 0/0:12,0:3:9.03:0,9,518 0/0:18,0:8:24.08:0,24,1496 0/0:7,0:3:9.03:0,9,543 0/1:4,2:3:61.94:75,0,62 0/0:10,0:4:12.04:0,12,710 0/1:10,5:7:99:116,0,338 ./. ./. 0/0:2,0:1:3.01:0,3,190 0/0:3,0:2:6.02:0,6,379 0/0:7,0:3:9.03:0,9,569 17 45608827 . T C 19.85 . AC=6;AF=0.077;AN=78;BaseQRankSum=-3.357;DP=362;Dels=0.03;FS=74.351;HRun=1;HaplotypeScore=1.4559;InbreedingCoeff=-0.0079;MQ=18.73;MQ0=131;MQRankSum=2.266;QD=0.57;ReadPosRankSum=-2.996 GT:AD:DP:GQ:PL 0/0:3,1:4:3.01:0,3,38 ./. 0/1:3,1:4:17.64:18,0,60 0/0:21,0:21:35.97:0,36,323 0/0:18,0:18:23.97:0,24,199 0/0:8,0:8:14.99:0,15,139 0/0:12,0:12:17.97:0,18,148 0/0:10,0:10:11.98:0,12,99 0/0:4,0:4:11.97:0,12,96 0/1:5,1:6:1.76:23,3,0 0/0:3,0:3:6:0,6,51 0/0:3,1:4:3.01:0,3,38 ./. 0/1:3,1:4:18.68:24,0,19 0/0:20,4:25:4.28:0,4,185 0/1:5,1:6:20.63:21,0,40 0/0:7,0:7:5.99:0,6,49 0/0:6,0:6:8.99:0,9,74 0/0:8,1:9:3:0,3,25 0/0:16,0:16:23.99:0,24,224 0/0:4,0:4:6:0,6,61 0/0:12,0:12:24.01:0,24,236 0/0:22,0:22:35.96:0,36,310 0/0:8,0:8:9:0,9,89 0/0:7,0:8:8.99:0,9,74 0/0:7,0:7:9:0,9,89 0/1:9,1:10:14.61:15,0,109 0/0:4,1:5:3:0,3,25 0/0:5,2:7:6.01:0,6,63 0/0:3,0:3:3.01:0,3,38 ./. 0/0:12,0:12:15.01:0,15,152 0/0:17,0:17:30.01:0,30,295 0/0:6,0:6:8.98:0,9,73 0/0:5,0:5:9:0,9,83 0/0:10,0:10:14.97:0,15,122 0/0:10,1:11:12.02:0,12,127 0/0:6,0:6:8.99:0,9,74 0/1:4,1:5:18.69:21,0,19 0/0:4,0:4:11.98:0,12,99 0/0:4,0:4:12:0,12,113 0/0:6,0:6:9:0,9,85 17 45608828 . G C 174.07 . AC=12;AF=0.150;AN=80;BaseQRankSum=-5.251;DP=376;Dels=0.03;FS=188.904;HRun=2;HaplotypeScore=1.4195;InbreedingCoeff=-0.0970;MQ=19.31;MQ0=123;MQRankSum=2.256;QD=2.18;ReadPosRankSum=-3.957 GT:AD:DP:GQ:PL 0/1:3,1:4:17.68:18,0,31 ./. 0/1:3,1:4:17.64:18,0,60 0/0:19,0:19:35.97:0,36,315 0/0:18,1:19:23.97:0,24,199 0/0:8,0:8:14.99:0,15,140 0/0:12,0:12:17.97:0,18,148 0/0:11,1:12:17.97:0,18,148 0/0:4,0:4:11.98:0,12,99 0/1:5,1:6:18.68:24,0,19 0/0:3,0:3:6:0,6,51 0/1:3,1:4:18.68:19,0,33 1/1:5,1:6:3.01:30,3,0 0/1:2,2:4:15.69:45,0,16 0/1:20,5:26:46.02:46,0,176 0/1:5,1:6:20.63:21,0,40 0/0:8,1:9:8.99:0,9,74 0/0:6,0:6:8.99:0,9,74 0/0:9,2:11:5.99:0,6,49 0/0:17,2:19:5.31:0,5,234 0/0:4,0:4:6.01:0,6,62 0/0:11,2:13:24.01:0,24,238 0/0:23,0:23:38.95:0,39,337 0/0:8,0:8:9:0,9,91 0/0:9,0:9:11.98:0,12,99 0/0:7,0:7:9:0,9,91 0/1:7,2:9:14.61:15,0,110 0/0:4,1:5:3:0,3,25 0/1:4,2:6:50.10:50,0,50 0/0:2,0:2:3.01:0,3,39 ./. 0/0:11,2:13:15.01:0,15,153 0/0:18,1:19:30.01:0,30,302 0/0:6,1:7:8.98:0,9,73 0/0:5,0:5:9:0,9,83 0/0:9,0:9:14.97:0,15,122 0/0:8,0:9:12.01:0,12,128 0/0:7,2:9:11.98:0,12,99 0/1:4,1:5:18.68:24,0,19 0/0:4,1:5:11.98:0,12,99 0/0:4,0:4:12:0,12,113 0/0:6,0:6:9:0,9,89 17 45608885 . C T 98.63 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.040;DP=781;Dels=0.00;FS=7.991;HRun=2;HaplotypeScore=0.5309;InbreedingCoeff=-0.0265;MQ=19.18;MQ0=244;MQRankSum=-0.616;QD=2.90;ReadPosRankSum=0.209 GT:AD:DP:GQ:PL 0/0:12,0:12:18:0,18,187 0/0:14,0:14:23.99:0,24,235 0/0:14,0:14:23.99:0,24,235 0/0:60,0:61:81.10:0,81,922 0/0:36,0:36:45.06:0,45,513 0/0:19,0:19:32.97:0,33,305 0/0:20,0:20:30.01:0,30,308 0/0:34,0:34:51.03:0,51,545 0/0:19,0:19:24.03:0,24,290 0/0:16,0:16:30:0,30,303 0/0:8,0:8:14.98:0,15,123 0/0:6,0:6:12:0,12,113 0/0:7,0:7:5.99:0,6,49 0/0:14,0:14:21:0,21,210 0/0:38,0:38:65.98:0,66,636 0/0:14,0:14:26.97:0,27,241 0/0:10,0:10:12:0,12,118 0/0:12,0:12:17.99:0,18,168 0/0:19,0:19:17.99:0,18,167 0/0:30,0:30:51:0,51,511 0/0:24,0:24:39.01:0,39,402 0/0:26,0:26:47.98:0,48,440 0/0:40,0:40:77.97:0,78,727 0/0:22,0:22:21.01:0,21,231 0/0:25,0:25:33.03:0,33,369 0/0:18,0:18:18.04:0,18,228 0/0:14,0:14:21.03:0,21,244 0/0:11,0:11:14.99:0,15,142 0/0:11,0:11:18.02:0,18,195 0/1:5,1:6:18.68:32,0,19 0/0:10,0:10:11.98:0,12,99 0/0:31,0:31:51.04:0,51,549 0/1:19,9:28:99:129,0,320 0/0:10,0:10:14.99:0,15,142 0/0:12,0:12:18.01:0,18,186 0/0:21,0:21:41.95:0,42,364 0/0:22,0:22:36.05:0,36,398 0/0:14,0:14:26.96:0,27,222 0/0:10,0:10:20.98:0,21,192 0/0:8,0:8:5.99:0,6,49 0/0:6,0:6:12:0,12,113 0/0:9,0:9:14.99:0,15,138 17 45668137 . C G 156.28 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.550;DP=5904;DS;Dels=0.00;FS=34.601;HRun=0;HaplotypeScore=0.6824;InbreedingCoeff=-0.0239;MQ=15.71;MQ0=2814;MQRankSum=2.594;QD=1.53;ReadPosRankSum=-0.287 GT:AD:DP:GQ:PL 0/0:112,0:112:48.09:0,48,512 0/0:96,0:96:48.07:0,48,505 0/0:85,0:85:51.07:0,51,514 0/0:192,0:192:96.15:0,96,1001 0/0:176,0:177:96.22:0,96,1086 0/0:162,0:162:87.18:0,87,961 0/0:159,0:159:66.14:0,66,767 0/0:181,0:182:99:0,111,1139 0/0:129,0:129:60.07:0,60,598 0/0:115,0:115:66.08:0,66,650 0/0:110,0:110:39.03:0,39,368 0/1:84,18:102:99:200,0,544 0/0:58,20:78:0.16:14,0,305 0/0:94,0:94:51.06:0,51,511 0/0:249,0:250:99:0,156,1727 0/0:112,0:112:42.07:0,42,435 0/0:134,0:134:60.12:0,60,666 0/0:106,0:106:69.13:0,69,732 0/0:198,0:200:99:0,120,1341 0/0:210,0:210:99:0,117,1311 0/0:237,0:240:99:0,156,1753 0/0:128,0:128:99:0,99,1072 0/0:214,0:214:99:0,120,1279 0/0:154,0:154:81.17:0,81,907 0/0:143,0:143:69.16:0,69,816 0/0:115,0:116:78.14:0,78,845 0/0:94,0:94:54.08:0,54,561 0/0:100,0:100:51.09:0,51,541 0/0:140,0:140:78.12:0,78,802 0/0:94,0:94:54.08:0,54,574 0/0:129,0:130:72.14:0,72,789 0/0:242,0:242:99:0,138,1488 0/0:118,0:118:60.12:0,60,648 0/0:115,0:115:78.12:0,78,813 0/0:113,0:113:39.06:0,39,390 0/0:123,0:123:60.11:0,60,644 0/0:248,0:250:99:0,123,1282 0/0:123,0:123:78.15:0,78,829 0/0:128,0:128:72.14:0,72,765 0/0:130,0:130:87.15:0,87,912 0/0:96,0:96:63.10:0,63,657 0/0:108,0:108:39.09:0,39,438 17 45669359 . T G 5395.16 . AC=27;AF=0.321;AN=84;BaseQRankSum=2.579;DP=3983;DS;Dels=0.00;FS=6.664;HRun=0;HaplotypeScore=1.0225;InbreedingCoeff=-0.4686;MQ=28.90;MQ0=730;MQRankSum=-6.804;QD=2.01;ReadPosRankSum=0.077 GT:AD:DP:GQ:PL 0/1:62,29:91:99:237,0,1433 0/1:59,10:69:35.22:35,0,1379 0/1:57,14:71:62:62,0,1188 0/0:113,11:124:20.87:0,21,2399 0/0:119,0:119:99:0,189,2275 0/0:91,12:103:27.20:0,27,2142 0/1:82,15:97:99:149,0,1769 0/1:58,31:89:99:337,0,1320 0/1:65,11:76:6.31:6,0,1080 0/1:35,22:57:99:167,0,591 0/1:57,8:65:17.87:18,0,1266 0/0:65,0:65:99:0,123,1346 0/0:43,0:43:99:0,105,1214 0/1:57,9:66:77.29:77,0,983 0/1:207,43:250:99:390,0,4565 0/1:59,16:75:54.09:54,0,1243 0/0:107,0:107:99:0,213,2344 0/1:71,11:82:9.80:10,0,1370 0/0:120,0:120:99:0,241,2724 0/1:104,27:131:99:298,0,2248 0/1:136,64:200:99:661,0,2748 0/1:80,19:99:99:127,0,1692 0/1:114,34:148:99:293,0,2702 0/1:69,11:80:65.61:66,0,1382 0/0:97,0:97:99:0,186,2207 0/1:73,19:92:83.82:84,0,1231 0/0:62,0:62:99:0,123,1417 0/0:84,0:84:99:0,189,2040 0/1:59,21:80:99:157,0,1043 0/0:54,11:65:40.50:0,41,1256 0/1:41,20:61:99:233,0,916 0/1:129,62:191:99:680,0,2703 0/1:60,19:79:99:158,0,1328 0/0:76,8:84:18.57:0,19,1563 0/1:44,17:61:99:139,0,864 0/0:82,0:82:99:0,156,1725 0/1:117,58:175:99:518,0,2480 0/0:74,10:84:43.38:0,43,1602 0/0:57,8:65:10.56:0,11,1310 0/1:59,21:80:99:183,0,1236 0/1:35,10:45:99:112,0,767 0/1:57,12:69:99:144,0,1281 17 45669878 . T C 475.65 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.772;DP=708;Dels=0.00;FS=4.878;HRun=0;HaplotypeScore=0.1795;InbreedingCoeff=-0.0266;MQ=41.39;MQ0=98;MQRankSum=0.473;QD=11.60;ReadPosRankSum=-0.263 GT:AD:DP:GQ:PL 0/0:16,0:16:33.10:0,33,393 0/0:19,0:19:42.12:0,42,514 0/0:16,0:16:30.08:0,30,355 0/0:18,0:18:39.12:0,39,490 0/0:16,0:16:36.09:0,36,421 0/0:22,0:22:48.15:0,48,613 0/0:10,0:10:24.07:0,24,305 0/0:12,0:12:27.08:0,27,335 0/0:11,0:11:27.08:0,27,317 0/0:14,0:14:27.07:0,27,306 0/0:17,0:17:36.10:0,36,435 0/0:23,0:23:48.12:0,48,561 0/0:12,0:12:27.08:0,27,339 0/0:12,0:12:30.09:0,30,366 0/0:49,0:49:99:0,105,1233 0/0:4,0:4:12.04:0,12,144 0/0:7,0:7:12.03:0,12,132 0/0:19,0:19:51.13:0,51,574 0/0:20,0:20:48.14:0,48,581 0/0:22,0:22:51.14:0,51,626 0/0:25,0:25:60.17:0,60,716 0/0:17,0:17:45.14:0,45,541 0/0:15,0:15:30.09:0,30,377 0/0:18,0:18:42.11:0,42,493 0/0:7,0:7:18.05:0,18,220 0/0:12,0:12:21.06:0,21,266 0/0:14,0:14:39.11:0,39,459 0/0:12,0:12:24.07:0,24,285 0/0:19,0:19:33.08:0,33,367 0/1:10,11:21:99:294,0,149 0/0:10,0:10:24.04:0,24,254 0/0:29,0:29:57.16:0,57,701 0/1:11,9:20:99:244,0,271 0/0:22,0:22:48.11:0,48,534 0/0:23,0:23:51.13:0,51,582 0/0:15,0:15:33.10:0,33,399 0/0:20,0:20:42.13:0,42,519 0/0:11,0:11:24.07:0,24,297 0/0:15,0:15:33.10:0,33,400 0/0:17,0:17:33.08:0,33,389 0/0:19,0:19:48.13:0,48,562 0/0:8,0:8:21.06:0,21,249 17 45735975 . G A 2470.95 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.006;DP=3450;Dels=0.00;FS=4.111;HRun=2;HaplotypeScore=1.3455;InbreedingCoeff=-0.0244;MQ=59.55;MQ0=0;MQRankSum=0.450;QD=12.17;ReadPosRankSum=-0.080 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,168,1996 0/0:67,0:67:99:0,181,2191 0/0:64,0:64:99:0,178,2113 0/0:158,0:159:99:0,421,5385 0/0:148,0:148:99:0,418,5400 0/0:144,2:146:99:0,363,5071 0/0:130,0:130:99:0,349,4505 0/0:123,0:124:99:0,313,4076 0/0:74,0:74:99:0,199,2369 0/0:51,0:51:99:0,138,1650 0/0:52,0:52:99:0,138,1667 0/0:58,0:58:99:0,156,1875 0/0:54,0:54:99:0,150,1792 0/0:76,0:76:99:0,214,2530 0/0:241,0:241:99:0,596,7320 0/0:41,0:41:99:0,111,1360 0/0:69,0:69:99:0,193,2266 0/0:59,0:59:99:0,162,1950 0/0:85,0:86:99:0,223,2687 0/0:87,0:87:99:0,238,2856 0/0:78,0:79:99:0,205,2522 0/0:51,0:51:99:0,144,1692 0/1:80,64:145:99:1879,0,2409 0/0:103,0:103:99:0,280,3650 0/0:130,0:130:99:0,358,4624 0/0:120,0:120:99:0,319,4168 0/0:43,0:43:99:0,126,1501 0/0:62,0:62:99:0,165,1973 0/0:52,0:52:99:0,150,1785 0/0:67,0:67:99:0,190,2218 0/0:48,0:48:99:0,138,1554 0/0:77,0:77:99:0,211,2533 0/0:57,0:57:99:0,153,1823 0/0:67,0:67:99:0,187,2267 0/1:34,24:58:99:654,0,911 0/0:66,0:66:99:0,178,2160 0/0:75,0:75:99:0,208,2431 0/0:77,0:78:99:0,199,2448 0/0:54,0:54:99:0,153,1808 0/0:61,0:61:99:0,171,2008 0/0:61,0:61:99:0,175,2077 0/0:52,0:52:99:0,144,1742 17 45740466 . T TG 678.50 . 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GCTTTACAGAATCT G 202.14 . AC=5;AF=0.060;AN=84;BaseQRankSum=-4.190;DP=4341;DS;FS=848.265;HRun=0;HaplotypeScore=988.7071;InbreedingCoeff=-0.0837;MQ=58.99;MQ0=0;MQRankSum=0.184;QD=0.59;ReadPosRankSum=-16.901 GT:AD:DP:GQ:PL 0/0:66,0:66:57.94:0,58,6609 0/1:64,0:64:54.66:55,0,6176 0/0:72,0:72:36.67:0,37,7493 0/0:219,0:218:99:0,176,16957 0/0:192,0:191:99:0,233,17183 0/0:218,0:217:99:0,172,19134 0/0:161,0:160:99:0,232,15048 0/0:180,0:179:99:0,169,16106 0/0:73,0:73:23.63:0,24,7245 0/0:95,0:95:99:0,170,10630 0/0:93,0:93:99:0,153,9832 0/0:61,0:61:37.79:0,38,5968 0/1:33,16:49:18.77:19,0,5043 0/0:55,0:55:98.20:0,98,5487 0/0:228,0:228:26.44:0,26,24934 0/0:47,0:47:47.13:0,47,4819 0/1:56,0:56:84.65:85,0,5753 0/0:87,0:87:0.97:0,1,9453 0/0:80,0:80:0.61:8,0,7667 0/0:107,0:107:99:0,148,11597 0/1:75,0:75:92.59:93,0,10097 0/0:71,0:71:70.20:0,70,5560 0/0:235,0:235:22.91:0,23,17367 0/0:186,0:185:71.56:0,72,17809 0/0:189,0:188:99:0,249,18540 0/0:180,0:178:99:0,283,16259 0/0:44,0:44:57.18:0,57,4930 0/0:84,0:84:99:0,116,9185 0/0:65,0:65:7.59:0,8,6296 0/0:66,0:66:76.52:0,77,7069 0/0:74,0:74:18.30:0,18,6435 0/0:119,0:119:99:0,194,14464 0/0:70,0:69:99:0,121,6760 0/0:78,0:77:49.67:0,50,7735 0/0:75,0:75:29.70:0,30,7342 0/0:77,0:77:99:0,129,8681 0/1:100,0:100:53.64:54,0,11484 0/0:84,0:84:22.61:0,23,8088 0/0:61,0:61:88.39:0,88,7044 0/0:66,0:65:59.78:0,60,7922 0/0:74,0:74:20.02:0,20,6840 0/0:65,0:65:74.25:0,74,6758 17 45740468 . C G 828.30 . AC=16;AF=0.190;AN=84;BaseQRankSum=-27.717;DP=4341;DS;Dels=0.00;FS=1637.308;HRun=1;HaplotypeScore=6.6510;InbreedingCoeff=-0.2597;MQ=58.99;MQ0=0;MQRankSum=0.977;QD=0.48;ReadPosRankSum=-18.407 GT:AD:DP:GQ:PL 0/0:37,29:66:14.53:0,15,1104 0/1:34,30:64:4.64:5,0,948 0/1:43,29:72:54.51:55,0,1234 0/0:106,113:219:34.46:0,34,2977 0/1:94,98:192:80.35:80,0,2938 0/1:118,100:218:99:100,0,3141 0/0:90,71:161:99:0,106,2599 0/0:106,74:180:2.61:0,3,2690 0/1:41,32:73:68.70:69,0,1061 0/0:59,36:95:19.42:0,19,1701 0/0:59,34:93:56.86:0,57,1622 0/1:31,30:61:58.58:59,0,957 0/0:28,5:33:65.94:0,66,818 0/1:35,20:55:18.62:19,0,851 0/0:141,87:228:2.58:1,0,4066 0/0:28,19:47:2.63:1,0,770 0/0:35,19:56:34.94:0,35,1007 0/1:56,31:87:23.75:24,0,1540 0/0:46,34:80:23.54:0,24,1254 0/0:75,32:107:96.90:0,97,1762 0/0:56,18:75:99:0,153,1940 0/0:37,34:71:30.05:0,30,935 0/1:106,129:235:99:197,0,2858 0/1:116,70:186:47.64:48,0,3028 0/0:112,77:189:88.94:0,89,3135 0/0:106,74:180:99:0,102,2932 0/0:28,16:44:19.91:0,20,813 0/0:53,31:84:76.99:0,77,1473 0/1:37,28:65:38.91:39,0,986 0/0:41,25:66:51.02:0,51,1210 0/1:31,43:74:99:113,0,996 0/0:87,32:119:88.16:0,88,2145 0/0:37,33:70:30.25:0,30,1114 0/1:44,34:78:5.75:6,0,1239 0/0:49,26:75:0.45:0,0,1110 0/0:48,29:77:99:0,100,1590 0/1:62,38:100:91.01:91,0,1786 0/1:49,35:84:6.29:6,0,1315 0/0:39,22:61:43.36:0,43,1243 0/0:43,23:66:81.45:0,81,1353 0/1:38,36:74:67.98:68,0,1026 0/0:38,27:65:23.43:0,23,1149 17 45750468 . T C 3151.59 . AC=2;AF=0.024;AN=84;BaseQRankSum=13.395;DP=3459;DS;Dels=0.00;FS=0.358;HRun=2;HaplotypeScore=1.1776;InbreedingCoeff=-0.0244;MQ=59.61;MQ0=0;MQRankSum=0.308;QD=13.82;ReadPosRankSum=2.037 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,153,1828 0/0:76,0:76:99:0,214,2559 0/0:62,0:62:99:0,175,2119 0/0:138,0:138:99:0,397,4824 0/0:130,0:130:99:0,376,4592 0/0:146,0:146:99:0,409,5144 0/0:113,0:113:99:0,319,4009 0/0:117,0:117:99:0,349,4297 0/0:65,0:65:99:0,181,2176 0/0:68,0:68:99:0,202,2393 0/0:70,0:70:99:0,184,2248 0/0:56,0:56:99:0,165,1976 0/0:59,0:59:99:0,162,1950 0/0:40,0:40:99:0,114,1390 0/0:209,0:209:99:0,566,6803 0/0:53,0:53:99:0,156,1852 0/0:67,0:67:99:0,190,2254 0/0:61,2:63:99:0,108,2058 0/0:103,1:104:99:0,283,3448 0/0:83,0:83:99:0,235,2854 0/0:72,0:72:99:0,205,2479 0/0:74,0:74:99:0,196,2403 0/1:97,75:172:99:2426,0,2765 0/0:100,0:101:99:0,289,3564 0/0:118,0:118:99:0,334,4170 0/0:108,0:108:99:0,310,3782 0/0:50,0:50:99:0,144,1740 0/0:58,0:58:99:0,168,1991 0/0:55,0:55:99:0,156,1909 0/0:74,1:75:99:0,171,2478 0/0:71,0:71:99:0,196,2380 0/0:78,0:78:99:0,226,2708 0/0:57,0:57:99:0,165,1964 0/0:70,0:70:99:0,193,2373 0/1:29,27:56:99:788,0,884 0/0:73,0:73:99:0,205,2497 0/0:90,0:90:99:0,250,3009 0/0:67,0:67:99:0,187,2257 0/0:56,0:56:99:0,159,1926 0/0:64,0:64:99:0,181,2185 0/0:56,0:56:99:0,162,1953 0/0:65,0:65:99:0,184,2241 17 45820022 . A C 2883.79 . AC=43;AF=0.512;AN=84;BaseQRankSum=-5.193;DP=422;Dels=0.00;FS=574.171;HRun=3;HaplotypeScore=0.3722;InbreedingCoeff=-0.9503;MQ=57.80;MQ0=0;MQRankSum=0.734;QD=6.83;ReadPosRankSum=-9.509 GT:AD:DP:GQ:PL 0/1:2,2:4:22.52:23,0,65 0/1:6,2:8:8.16:8,0,161 0/1:5,3:8:85.37:85,0,112 0/1:17,15:32:99:185,0,451 0/1:5,5:10:98.07:98,0,156 0/1:9,5:14:80.21:80,0,282 0/1:6,9:15:78.21:114,0,78 0/1:6,3:9:37.97:38,0,173 0/1:6,3:9:16.74:17,0,183 0/1:4,3:7:25.53:26,0,64 0/1:5,1:6:21.27:21,0,151 0/1:3,1:4:27.10:27,0,66 0/1:3,2:5:42.20:42,0,98 0/1:3,1:4:14.65:15,0,99 0/1:22,12:34:80.63:81,0,425 0/1:7,5:12:92.98:93,0,196 0/1:2,3:5:57.57:58,0,58 0/1:5,4:9:64.56:65,0,119 0/1:5,3:8:22.44:22,0,107 0/1:9,6:16:43.21:43,0,221 0/1:10,7:17:99:152,0,280 0/1:5,6:11:99:172,0,114 0/1:8,10:18:99:163,0,218 0/1:2,3:5:19.63:20,0,51 0/1:4,7:11:86.29:129,0,86 0/1:4,7:11:74.30:74,0,116 1/1:0,3:3:5.99:57,6,0 0/1:3,5:8:88.16:114,0,88 0/1:6,5:11:75.77:76,0,183 0/1:5,1:6:20.55:21,0,149 0/1:4,4:9:95.23:95,0,120 0/1:5,6:11:99:132,0,114 0/1:4,1:5:23.53:24,0,127 0/1:5,2:7:21.95:22,0,160 0/1:6,5:11:99:146,0,133 0/1:5,6:11:86.87:143,0,87 0/1:5,3:8:75.81:76,0,154 0/1:2,5:7:19.18:53,0,19 0/1:3,4:7:48.08:48,0,56 0/1:7,3:10:45.86:46,0,159 0/1:2,5:7:56.65:61,0,57 0/1:5,4:9:86.14:86,0,120 17 45886729 . A G 239.85 . AC=9;AF=0.107;AN=84;BaseQRankSum=-20.341;DP=1787;Dels=0.00;FS=840.374;HRun=2;HaplotypeScore=0.8374;InbreedingCoeff=-0.1441;MQ=58.79;MQ0=0;MQRankSum=-1.178;QD=0.65;ReadPosRankSum=-16.396 GT:AD:DP:GQ:PL 0/0:17,6:23:45.13:0,45,540 0/0:32,10:42:43:0,43,1087 0/0:24,6:30:42.39:0,42,750 0/0:67,27:95:41.25:0,41,2254 0/0:59,21:80:60.83:0,61,2066 0/0:46,16:62:99:0,135,1711 0/0:36,11:47:93.05:0,93,1122 0/0:49,17:66:45.35:0,45,1420 0/0:22,11:34:15.85:0,16,710 0/0:22,9:31:54.17:0,54,672 0/0:28,12:40:52.51:0,53,879 0/0:24,14:38:60.18:0,60,718 0/1:12,7:19:20.07:20,0,357 0/0:24,7:31:21.86:0,22,790 0/1:70,34:104:69.55:70,0,2094 0/0:25,9:34:15.06:0,15,785 0/0:27,13:40:38.22:0,38,834 0/0:15,8:23:20.44:0,20,477 0/0:30,22:52:36:0,36,880 0/0:44,14:58:55.20:0,55,1227 0/1:23,15:38:49.69:50,0,745 0/0:16,5:21:45.13:0,45,539 0/0:86,34:120:99:0,162,2915 0/0:28,11:39:53.10:0,53,898 0/0:41,19:60:99:0,109,1299 0/0:26,6:32:26.06:0,26,902 0/0:18,7:25:1.43:4,0,541 0/0:20,9:29:1.85:3,0,636 0/0:19,10:29:18.91:0,19,588 0/1:16,10:26:31.54:32,0,523 0/0:24,11:35:39.58:0,40,785 0/0:38,15:53:8.14:0,8,995 0/1:23,14:37:7.75:8,0,595 0/0:19,5:24:39.08:0,39,459 0/1:22,10:32:35.58:36,0,699 0/0:29,10:39:52.70:0,53,950 0/1:26,14:40:35.38:35,0,753 0/1:31,14:45:84.41:84,0,898 0/0:18,8:26:54.17:0,54,671 0/1:18,10:28:27.22:27,0,492 0/0:21,11:32:30.55:0,31,660 0/0:18,10:28:7.78:0,8,561 17 45915259 . C G 6.43 . AC=1;AF=0.012;AN=84;BaseQRankSum=-7.626;DP=1002;Dels=0.00;FS=19.067;HRun=1;HaplotypeScore=1.0441;InbreedingCoeff=-0.0196;MQ=58.83;MQ0=1;MQRankSum=-0.164;QD=0.25;ReadPosRankSum=-4.739 GT:AD:DP:GQ:PL 0/0:16,0:16:48.11:0,48,566 0/0:16,1:17:45.12:0,45,528 0/0:11,0:11:30.08:0,30,356 0/0:63,4:67:99:0,117,1666 0/0:47,1:48:99:0,126,1588 0/0:38,0:38:87.24:0,87,1063 0/0:22,1:23:48.12:0,48,565 0/0:33,0:35:72.15:0,72,852 0/0:17,3:20:33.08:0,33,405 0/0:12,1:13:36.09:0,36,421 0/0:11,0:11:21.06:0,21,260 0/0:18,1:19:39.11:0,39,484 0/0:11,0:11:33.08:0,33,393 0/0:15,0:15:39.11:0,39,478 0/0:36,8:44:90.19:0,90,1029 0/0:22,1:23:57.14:0,57,676 0/0:18,1:19:26.44:0,26,521 0/0:12,0:12:36.10:0,36,425 0/1:20,6:26:51.42:51,0,373 0/0:39,1:40:99:0,105,1303 0/0:26,9:35:16.80:0,17,678 0/0:18,0:18:48.12:0,48,561 0/0:52,2:54:99:0,135,1618 0/0:27,2:29:63.16:0,63,766 0/0:35,1:36:78.14:0,78,917 0/0:29,0:29:78.18:0,78,914 0/0:8,1:9:21.04:0,21,236 0/0:11,2:13:1.44:0,1,300 0/0:9,2:11:8.38:0,8,270 0/0:23,1:24:51.13:0,51,599 0/0:14,0:14:33.04:0,33,364 0/0:44,1:45:99:0,119,1392 0/0:20,1:21:48.12:0,48,555 0/0:15,0:16:33.09:0,33,394 0/0:18,1:19:42.11:0,42,495 0/0:12,0:12:33.07:0,33,364 0/0:19,3:22:15.28:0,15,389 0/0:17,2:19:39.07:0,39,436 0/0:14,1:15:42.08:0,42,484 0/0:20,1:21:51.13:0,51,588 0/0:11,0:11:27.07:0,27,311 0/0:20,1:21:48.10:0,48,550 17 45915657 . C T 498.68 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.812;DP=2869;Dels=0.00;FS=0.979;HRun=0;HaplotypeScore=1.9096;InbreedingCoeff=-0.0120;MQ=59.33;MQ0=0;MQRankSum=0.016;QD=9.97;ReadPosRankSum=-1.903 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,187,2339 0/0:53,0:53:99:0,144,1848 0/0:52,0:52:99:0,144,1798 0/0:133,0:133:99:0,364,4861 0/0:133,0:134:99:0,385,5161 0/0:88,0:88:99:0,238,3183 0/0:63,0:63:99:0,166,2226 0/0:79,0:80:99:0,217,2857 0/0:54,0:54:99:0,144,1813 0/0:50,0:50:99:0,144,1808 0/0:58,0:58:99:0,159,1962 0/0:61,0:62:99:0,169,2145 0/0:38,0:38:99:0,102,1305 0/0:54,1:55:99:0,120,1921 0/0:175,0:175:99:0,472,5997 0/0:62,0:62:99:0,172,2164 0/0:60,0:60:99:0,172,2147 0/0:44,0:44:99:0,123,1542 0/0:86,0:86:99:0,241,3011 0/0:96,0:97:99:0,256,3241 0/0:82,0:82:99:0,235,2970 0/0:46,0:46:99:0,120,1469 0/0:131,0:131:99:0,364,4910 0/0:57,0:57:99:0,157,2099 0/0:84,0:84:99:0,229,3027 0/0:62,0:62:99:0,165,2202 0/0:42,0:42:99:0,114,1438 0/0:62,0:62:99:0,166,2090 0/0:48,0:48:99:0,132,1642 0/0:57,0:57:99:0,156,1992 0/0:46,0:46:99:0,126,1638 0/0:81,0:81:99:0,211,2713 0/0:76,0:76:99:0,211,2654 0/0:51,0:51:99:0,147,1859 0/1:30,20:50:99:545,0,956 0/0:50,0:51:99:0,141,1752 0/0:82,0:82:99:0,229,2811 0/0:50,0:50:99:0,144,1815 0/0:39,1:40:99:0,108,1373 0/0:50,0:50:99:0,132,1663 0/0:48,0:48:99:0,138,1715 0/0:62,0:62:99:0,169,2140 17 45915788 . T C 133644.42 . AC=84;AF=1.000;AN=84;BaseQRankSum=1.703;DP=3998;DS;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=2.6524;InbreedingCoeff=-0.0000;MQ=59.27;MQ0=0;MQRankSum=-0.367;QD=33.43;ReadPosRankSum=0.646 GT:AD:DP:GQ:PL 1/1:0,66:67:99:2158,178,0 1/1:0,56:56:99:1937,159,0 1/1:0,54:54:99:1819,150,0 1/1:0,245:245:99:8003,608,0 1/1:0,221:221:99:7870,593,0 1/1:0,182:183:99:6229,478,0 1/1:0,142:142:99:4806,364,0 1/1:0,161:161:99:5458,424,0 1/1:0,62:62:99:1995,171,0 1/1:0,62:63:99:2134,175,0 1/1:0,43:43:99:1366,114,0 1/1:0,64:64:99:2077,171,0 1/1:0,44:44:99:1548,126,0 1/1:1,57:58:99:1957,159,0 1/1:0,188:188:99:5969,490,0 1/1:0,61:61:99:2092,177,0 1/1:0,75:75:99:2577,214,0 1/1:0,59:59:99:1950,162,0 1/1:0,122:122:99:4001,334,0 1/1:0,148:148:99:4912,403,0 1/1:0,118:119:99:3590,304,0 1/1:0,73:73:99:2313,187,0 1/1:0,235:235:99:8196,626,0 1/1:0,133:134:99:4424,337,0 1/1:0,139:139:99:4815,373,0 1/1:0,115:115:99:4022,307,0 1/1:0,47:47:99:1524,129,0 1/1:0,64:64:99:2124,175,0 1/1:0,50:50:99:1638,138,0 1/1:0,53:53:99:1687,138,0 1/1:0,57:57:99:1990,162,0 1/1:0,100:100:99:3377,280,0 1/1:0,87:87:99:2913,241,0 1/1:0,61:61:99:2026,168,0 1/1:0,70:70:99:2344,196,0 1/1:0,65:65:99:2169,178,0 1/1:0,98:101:99:3206,262,0 1/1:0,61:61:99:2055,165,0 1/1:0,66:66:99:2213,184,0 1/1:0,51:51:99:1758,147,0 1/1:0,56:56:99:1824,153,0 1/1:0,77:77:99:2575,214,0 17 45916018 . C G 845.50 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.448;DP=2089;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.5816;InbreedingCoeff=-0.0244;MQ=58.95;MQ0=0;MQRankSum=-0.260;QD=13.21;ReadPosRankSum=-2.480 GT:AD:DP:GQ:PL 0/0:34,0:34:96.30:0,96,1221 0/0:44,0:44:99:0,129,1640 0/0:28,0:28:81.24:0,81,1010 0/0:93,0:93:99:0,274,3522 0/0:83,0:83:99:0,235,3119 0/0:68,0:68:99:0,187,2407 0/0:37,0:37:99:0,108,1455 0/0:59,0:59:99:0,172,2267 0/0:44,0:44:99:0,126,1591 0/0:39,0:39:99:0,117,1424 0/0:34,0:34:99:0,99,1234 0/0:37,0:37:99:0,111,1378 0/0:22,0:22:63.20:0,63,790 0/0:31,0:31:84.26:0,84,1053 0/0:104,0:104:99:0,286,3548 0/0:51,0:51:99:0,141,1769 0/0:53,0:53:99:0,150,1845 0/0:41,0:41:99:0,117,1458 0/0:78,0:78:99:0,220,2688 0/0:93,0:94:99:0,241,3085 0/0:72,0:72:99:0,202,2501 0/0:46,0:46:99:0,126,1563 0/0:93,0:93:99:0,274,3645 0/0:41,1:42:89.70:0,90,1484 0/0:67,0:67:99:0,193,2502 0/0:59,0:59:99:0,172,2236 0/0:32,0:32:87.27:0,87,1084 0/0:52,0:52:99:0,144,1788 0/0:25,0:25:72.22:0,72,897 0/0:36,0:36:99:0,105,1324 0/0:34,0:34:90.27:0,90,1144 0/0:83,0:83:99:0,238,2973 0/0:46,0:46:99:0,138,1731 0/0:25,0:25:72.18:0,72,881 0/0:33,1:34:62.33:0,62,1167 0/0:35,0:35:99:0,99,1254 0/0:62,0:62:99:0,175,2163 0/0:38,0:38:99:0,108,1334 0/0:42,0:42:99:0,117,1465 0/1:19,14:33:99:405,0,621 0/1:15,16:31:99:503,0,433 0/0:27,0:27:81.24:0,81,1008 17 45916876 . C G 4793.20 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.107;DP=4454;DS;Dels=0.00;FS=8.987;HRun=1;HaplotypeScore=2.8674;InbreedingCoeff=-0.0244;MQ=59.44;MQ0=1;MQRankSum=-0.161;QD=14.31;ReadPosRankSum=0.696 GT:AD:DP:GQ:PL 0/0:87,0:87:99:0,241,2988 0/0:61,0:61:99:0,166,2087 0/0:77,0:77:99:0,223,2784 0/0:240,0:241:99:0,689,9014 0/0:186,0:187:99:0,509,6787 0/0:117,1:118:99:0,316,4202 0/0:103,0:103:99:0,277,3700 0/0:124,0:124:99:0,355,4659 0/0:65,0:65:99:0,187,2358 0/0:73,0:74:99:0,205,2574 0/0:55,0:56:99:0,144,1855 0/0:71,0:71:99:0,196,2457 0/0:63,0:65:99:0,175,2250 0/0:73,0:73:99:0,211,2597 0/1:121,129:250:99:3464,0,3420 0/0:75,0:75:99:0,202,2540 0/1:41,44:85:99:1329,0,1248 0/0:67,0:67:99:0,181,2258 0/0:166,0:167:99:0,445,5564 0/0:197,0:197:99:0,539,6816 0/0:184,0:185:99:0,493,6198 0/0:91,0:91:99:0,259,3233 0/0:231,0:231:99:0,650,8715 0/0:102,0:102:99:0,280,3648 0/0:132,0:132:99:0,376,4889 0/0:111,0:111:99:0,301,4015 0/0:55,0:55:99:0,153,1932 0/0:75,0:75:99:0,205,2527 0/0:70,0:70:99:0,199,2463 0/0:76,0:76:99:0,208,2555 0/0:72,0:72:99:0,211,2618 0/0:162,0:163:99:0,451,5682 0/0:91,0:91:99:0,262,3192 0/0:54,0:54:99:0,156,1969 0/0:59,0:59:99:0,166,2067 0/0:81,0:81:99:0,238,2915 0/0:168,0:170:99:0,451,5489 0/0:65,0:65:99:0,181,2211 0/0:85,0:85:99:0,247,3081 0/0:91,0:91:99:0,247,3063 0/0:66,0:66:99:0,190,2365 0/0:86,0:86:99:0,253,3138 17 45916999 . C T 4262.14 . AC=2;AF=0.024;AN=84;BaseQRankSum=-11.212;DP=4868;DS;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=2.6901;InbreedingCoeff=-0.0244;MQ=59.37;MQ0=0;MQRankSum=-2.128;QD=11.91;ReadPosRankSum=0.326 GT:AD:DP:GQ:PL 0/0:82,0:82:99:0,226,2843 0/0:77,0:77:99:0,202,2577 0/0:80,0:80:99:0,220,2769 0/0:202,0:202:99:0,557,7400 0/0:196,0:196:99:0,518,6967 0/0:134,0:134:99:0,358,4748 0/0:136,0:136:99:0,343,4644 0/0:133,0:133:99:0,355,4726 0/0:91,0:91:99:0,250,3157 0/0:68,0:68:99:0,178,2236 0/0:62,0:63:99:0,169,2152 0/0:86,0:86:99:0,229,2865 0/0:61,0:61:99:0,162,2040 0/0:87,0:87:99:0,241,3020 0/0:228,0:228:99:0,587,7281 0/0:85,0:85:99:0,223,2804 0/0:86,0:86:99:0,241,2993 0/0:84,0:84:99:0,229,2912 0/0:192,0:192:99:0,509,6282 0/0:204,1:205:99:0,480,6545 0/1:100,74:174:99:2006,0,2664 0/0:115,0:116:99:0,307,3884 0/0:208,0:208:99:0,548,7400 0/0:130,0:131:99:0,322,4397 0/0:147,0:148:99:0,403,5352 0/0:115,1:116:99:0,275,4049 0/0:63,0:63:99:0,162,2041 0/0:89,0:89:99:0,229,2935 0/0:83,0:83:99:0,214,2685 0/0:87,0:87:99:0,238,2981 0/0:88,0:88:99:0,244,3085 0/1:101,83:184:99:2257,0,2682 0/0:145,0:145:99:0,382,4845 0/0:79,0:79:99:0,214,2676 0/0:72,0:72:99:0,199,2515 0/0:101,0:101:99:0,268,3420 0/0:173,0:174:99:0,433,5385 0/0:89,0:89:99:0,238,2984 0/0:88,0:88:99:0,241,3087 0/0:93,0:93:99:0,253,3137 0/0:61,0:61:99:0,166,2064 0/0:103,0:103:99:0,280,3561 17 46050894 . T G 1796.07 . AC=28;AF=0.333;AN=84;BaseQRankSum=-26.314;DP=1817;Dels=0.00;FS=992.043;HRun=2;HaplotypeScore=1.1934;InbreedingCoeff=-0.5051;MQ=58.84;MQ0=0;MQRankSum=-0.611;QD=1.49;ReadPosRankSum=-19.416 GT:AD:DP:GQ:PL 0/1:15,18:33:75.18:75,0,452 0/1:17,13:30:30.42:30,0,519 0/0:18,15:33:35.45:0,35,606 0/1:44,33:78:78.93:79,0,1288 0/1:28,31:59:51.37:51,0,813 0/1:38,27:65:21.77:22,0,1103 0/1:29,15:44:3.69:4,0,739 0/0:31,18:49:28.31:0,28,927 0/1:29,18:47:78.66:79,0,812 0/1:18,15:33:43.99:44,0,450 0/1:16,11:27:30.79:31,0,456 0/1:15,13:28:18.84:19,0,456 0/1:19,20:39:73.48:73,0,545 0/1:15,22:37:72.18:72,0,433 0/1:52,57:109:99:268,0,1402 0/1:14,22:36:11.04:11,0,356 0/0:21,18:39:42.38:0,42,692 0/1:31,20:51:48.64:49,0,898 0/1:29,22:51:99:104,0,815 0/0:35,24:59:47.19:0,47,1126 0/1:22,29:51:99:158,0,673 0/0:21,15:37:26.70:0,27,635 0/0:41,31:72:61.48:0,61,1315 0/0:35,23:58:7.10:0,7,1052 0/1:37,35:72:9.57:10,0,1123 0/0:29,16:45:39.84:0,40,939 0/1:13,18:31:74:74,0,300 0/1:21,26:47:53.87:54,0,577 0/1:8,10:18:34.88:35,0,245 0/0:20,9:29:50.94:0,51,588 0/1:18,8:26:14.53:15,0,505 0/0:33,19:52:90.27:0,90,1079 0/0:18,9:27:9.40:0,9,390 0/1:15,11:26:66.22:66,0,436 0/1:19,13:32:31.56:32,0,501 0/0:26,19:45:22.96:0,23,843 0/1:20,23:43:99:186,0,568 0/1:12,13:25:20.95:21,0,370 0/1:13,15:28:85.05:85,0,369 0/0:20,16:36:0.87:0,1,539 0/0:20,11:31:28.51:0,29,607 0/1:13,26:39:99:226,0,368 17 46054090 . G A 991.19 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.647;DP=2285;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.7792;InbreedingCoeff=-0.0244;MQ=58.84;MQ0=2;MQRankSum=0.856;QD=13.39;ReadPosRankSum=-1.434 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,102,1173 0/0:32,0:32:81.20:0,81,921 0/0:35,0:35:96.22:0,96,1081 0/0:143,0:143:99:0,361,4509 0/0:102,0:102:99:0,277,3372 0/0:89,0:89:99:0,238,2954 0/0:75,1:76:99:0,160,2374 0/0:82,0:82:99:0,223,2721 0/0:36,0:36:99:0,99,1106 0/0:32,0:32:78.23:0,78,939 0/0:38,0:38:99:0,108,1231 0/0:40,0:40:99:0,108,1258 0/0:34,0:34:93.26:0,93,1063 0/0:43,0:43:99:0,114,1328 0/0:129,0:129:99:0,313,3712 0/0:30,0:30:87.24:0,87,991 0/0:40,0:40:99:0,111,1284 0/0:48,0:48:99:0,126,1496 0/0:58,0:58:99:0,153,1743 0/0:78,0:78:99:0,193,2294 0/0:51,0:51:99:0,141,1554 0/0:42,0:42:99:0,114,1308 0/0:133,0:133:99:0,355,4420 0/0:71,0:71:99:0,178,2189 0/0:87,0:87:99:0,229,2821 0/0:76,0:76:99:0,199,2424 0/0:22,0:22:60.17:0,60,698 0/0:34,0:34:99:0,102,1148 0/0:24,0:24:69.19:0,69,774 0/0:35,0:35:96.25:0,96,1081 0/0:24,0:24:69.20:0,69,802 0/0:75,0:76:99:0,187,2258 0/0:49,0:49:99:0,123,1490 0/0:40,0:40:99:0,114,1310 0/0:37,0:37:99:0,105,1218 0/0:52,0:52:99:0,135,1547 0/0:51,0:51:99:0,138,1576 0/0:29,0:29:87.21:0,87,967 0/0:33,0:33:90.23:0,90,1030 0/1:18,23:41:99:644,0,477 0/1:19,14:33:99:410,0,490 0/0:43,0:43:99:0,117,1380 17 46054107 . A C 970.23 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.387;DP=2373;Dels=0.00;FS=3.782;HRun=1;HaplotypeScore=1.2755;InbreedingCoeff=-0.0244;MQ=58.92;MQ0=3;MQRankSum=2.813;QD=10.90;ReadPosRankSum=-0.663 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,108,1373 0/0:39,0:39:93.28:0,93,1130 0/0:37,0:37:90.28:0,90,1152 0/0:157,0:157:99:0,391,5056 0/0:101,0:101:99:0,253,3225 0/0:100,0:100:99:0,253,3301 0/0:80,0:80:99:0,211,2693 0/0:96,0:96:99:0,250,3118 0/0:43,0:43:99:0,114,1408 0/0:34,0:34:93.29:0,93,1169 0/0:43,0:43:99:0,117,1458 0/0:35,0:35:99:0,99,1238 0/0:28,0:28:81.22:0,81,964 0/0:43,0:43:99:0,117,1448 0/0:132,0:132:99:0,340,4265 0/0:32,0:32:93.28:0,93,1150 0/0:45,0:45:99:0,117,1465 0/0:42,0:42:99:0,105,1343 0/0:56,0:56:99:0,153,1855 0/0:77,0:77:99:0,187,2379 0/0:54,0:54:99:0,135,1659 0/0:45,0:45:99:0,123,1522 0/0:140,0:140:99:0,355,4542 0/0:74,0:74:99:0,187,2396 0/0:85,0:85:99:0,226,2854 0/0:79,0:79:99:0,196,2517 0/0:23,0:23:66.20:0,66,812 0/0:31,0:31:84.26:0,84,1052 0/0:27,0:27:75.24:0,75,945 0/0:31,0:31:84.26:0,84,1042 0/0:32,0:32:72.23:0,72,932 0/0:76,0:76:99:0,190,2412 0/0:48,0:48:99:0,129,1618 0/0:39,0:39:99:0,108,1331 0/0:41,0:42:99:0,105,1328 0/0:51,0:51:99:0,144,1780 0/1:30,25:55:99:618,0,767 0/1:18,16:34:99:414,0,524 0/0:38,0:38:99:0,102,1272 0/0:36,0:36:99:0,99,1225 0/0:33,0:33:93.29:0,93,1142 0/0:38,0:38:99:0,105,1302 17 46058612 . A G 297.36 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.828;DP=2259;Dels=0.00;FS=6.412;HRun=1;HaplotypeScore=1.3307;InbreedingCoeff=-0.0120;MQ=52.33;MQ0=23;MQRankSum=3.924;QD=14.87;ReadPosRankSum=-0.693 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,141,1672 0/0:40,0:40:99:0,99,1185 0/0:46,0:46:99:0,126,1542 0/0:97,0:97:99:0,277,3343 0/0:112,1:113:99:0,301,3787 0/0:83,0:83:99:0,214,2653 0/0:50,0:50:99:0,141,1736 0/0:71,0:71:99:0,184,2270 0/0:35,0:35:93.28:0,93,1152 0/0:38,0:38:90.26:0,90,1092 0/0:37,0:37:96.26:0,96,1122 0/0:38,0:38:99:0,105,1270 0/0:38,0:38:99:0,108,1301 0/0:43,0:43:99:0,123,1496 0/0:111,0:111:99:0,295,3567 0/1:8,12:20:99:344,0,228 0/0:36,0:36:96.27:0,96,1138 0/0:33,0:33:93.28:0,93,1137 0/0:76,0:76:99:0,181,2198 0/0:102,0:102:99:0,262,3180 0/0:83,0:83:99:0,208,2549 0/0:55,0:55:99:0,165,1962 0/0:109,1:110:99:0,295,3556 0/0:66,0:66:99:0,175,2158 0/0:48,0:48:99:0,129,1572 0/0:53,0:53:99:0,144,1815 0/0:30,0:30:81.24:0,81,995 0/0:53,0:53:99:0,141,1719 0/0:33,0:33:90.25:0,90,1081 0/0:27,0:27:69.19:0,69,811 0/0:34,0:34:84.25:0,84,1030 0/0:74,0:74:99:0,205,2504 0/0:64,0:64:99:0,169,2058 0/0:40,0:40:99:0,111,1321 0/0:42,0:42:99:0,117,1394 0/0:36,0:36:99:0,102,1225 0/0:80,0:80:99:0,211,2532 0/0:33,0:33:96.28:0,96,1146 0/0:36,0:36:99:0,99,1178 0/0:36,0:36:84.25:0,84,1039 0/0:38,0:38:99:0,108,1306 0/0:24,0:24:69.20:0,69,835 17 46926615 . G A 20687.31 . AC=10;AF=0.119;AN=84;BaseQRankSum=-26.873;DP=6529;DS;Dels=0.00;FS=3.281;HRun=1;HaplotypeScore=2.8079;InbreedingCoeff=-0.1351;MQ=59.51;MQ0=0;MQRankSum=0.395;QD=13.99;ReadPosRankSum=0.121 GT:AD:DP:GQ:PL 0/0:126,0:126:99:0,328,4231 0/0:144,0:144:99:0,397,5075 0/0:106,0:106:99:0,295,3744 0/1:119,131:250:99:3622,0,3622 0/1:83,98:181:99:2675,0,2683 0/0:198,0:198:99:0,509,6908 0/0:148,0:148:99:0,388,5253 0/0:190,0:190:99:0,476,6510 0/0:111,0:111:99:0,301,3838 0/0:108,0:108:99:0,301,3812 0/0:118,0:118:99:0,313,4009 0/0:128,0:128:99:0,340,4361 0/1:52,45:97:99:1314,0,1569 0/0:131,0:132:99:0,376,4761 0/0:250,0:250:99:0,692,8663 0/0:98,0:98:99:0,274,3461 0/0:150,0:150:99:0,427,5372 0/0:118,0:118:99:0,340,4291 0/0:250,0:250:99:0,653,8228 0/0:249,0:249:99:0,665,8570 0/0:245,0:245:99:0,653,8226 0/0:155,0:155:99:0,433,5514 0/0:234,0:236:99:0,620,8370 0/1:66,62:128:99:1748,0,1872 0/0:173,0:174:99:0,463,6302 0/1:77,77:154:99:2199,0,2312 0/0:92,0:92:99:0,265,3358 0/0:137,1:138:99:0,342,4725 0/0:116,1:117:99:0,337,4262 0/0:114,0:114:99:0,319,3981 0/1:82,66:148:99:1850,0,2429 0/0:220,0:220:99:0,596,7712 0/1:69,64:133:99:1762,0,2072 0/0:124,0:124:99:0,361,4523 0/1:63,64:127:99:1880,0,1900 0/0:144,0:144:99:0,382,4901 0/0:244,0:244:99:0,665,8271 0/0:156,0:156:99:0,421,5420 0/1:74,54:128:99:1560,0,2256 0/0:142,0:142:99:0,394,5021 0/0:120,3:123:99:0,261,4195 0/1:62,71:133:99:2078,0,1826 17 46972640 . T TG 339.45 . AC=10;AF=0.119;AN=84;BaseQRankSum=-6.165;DP=2619;FS=1498.977;HRun=2;HaplotypeScore=165.0197;InbreedingCoeff=-0.1545;MQ=53.63;MQ0=26;MQRankSum=1.027;QD=0.39;ReadPosRankSum=-16.357 GT:AD:DP:GQ:PL 0/1:50,0:49:18.89:19,0,993 0/0:47,0:46:37.44:0,37,1137 0/0:41,0:41:33.94:0,34,832 0/1:124,0:124:76.07:76,0,2222 0/1:104,0:104:99:143,0,2024 0/0:80,0:77:30.27:0,30,1322 0/0:63,0:61:0.66:0,1,1045 0/0:72,0:70:55.94:0,56,1435 0/0:46,0:46:18.46:0,18,1029 0/0:42,0:42:49.94:0,50,894 0/0:44,0:43:62.40:0,62,1028 0/1:47,0:47:42.39:42,0,908 0/0:43,0:43:47.40:0,47,888 0/1:53,0:51:17.36:17,0,925 0/1:156,0:153:28.51:29,0,2904 0/1:61,0:58:24.52:25,0,1317 0/0:52,0:50:66.45:0,66,1205 0/1:52,0:52:5.95:6,0,1152 0/0:64,0:63:99:0,114,1632 0/0:74,0:73:99:0,139,1670 0/0:75,0:72:55.74:0,56,1584 0/0:44,0:42:59.62:0,60,1079 0/1:138,1:138:90.38:90,0,2693 0/0:63,0:62:40.63:0,41,1283 0/1:80,0:78:27.72:28,0,1537 0/0:81,0:80:79.14:0,79,1711 0/0:31,0:30:24.37:0,24,624 0/0:52,0:50:41.61:0,42,1119 0/0:45,0:45:62.46:0,62,1085 0/0:39,0:37:18.14:0,18,832 0/0:49,0:46:5.72:0,6,941 0/0:66,0:66:99:0,105,1527 0/0:57,0:56:68.41:0,68,1355 0/0:43,0:41:22.31:0,22,752 0/0:45,9:54:56.30:0,56,1166 0/0:50,0:50:51.39:0,51,1101 0/0:70,0:68:71.63:0,72,1629 0/0:54,0:53:53.48:0,53,1187 0/0:56,0:54:43.02:0,43,1287 0/0:68,0:67:45.95:0,46,1483 0/0:35,0:35:78.03:0,78,942 0/0:43,9:50:1.15:5,0,1143 17 46972642 . GTTCA G 180.91 . AC=7;AF=0.083;AN=84;BaseQRankSum=-6.859;DP=2429;FS=1203.361;HRun=0;HaplotypeScore=241.5142;InbreedingCoeff=-0.1114;MQ=54.28;MQ0=25;MQRankSum=4.877;QD=0.28;ReadPosRankSum=-16.293 GT:AD:DP:GQ:PL 0/1:47,0:46:15.83:16,0,2472 0/0:45,0:45:60.05:0,60,2793 0/0:39,0:38:69.05:0,69,2298 0/1:103,9:112:33.23:33,0,5897 0/1:97,0:97:98.38:98,0,5407 0/0:73,0:70:42.37:0,42,3566 0/0:56,0:55:9.72:0,10,2739 0/0:65,0:63:78.38:0,78,3764 0/0:40,0:40:49.54:0,50,2619 0/0:36,0:36:67.34:0,67,2375 0/0:41,0:40:96.32:0,96,2672 0/1:44,0:44:26.99:27,0,2512 0/0:40,0:40:65.49:0,65,2564 0/0:46,0:44:1.17:5,0,2602 0/1:141,0:139:48.67:49,0,7560 0/0:60,0:57:25.61:0,26,3403 0/0:51,0:49:47.87:0,48,2935 0/0:49,0:49:0.14:0,0,2983 0/0:63,0:62:99:0,127,4007 0/0:70,0:69:99:0,154,4143 0/0:69,0:66:83.72:0,84,4008 0/0:41,0:39:62.66:0,63,2594 0/1:136,0:136:61.31:61,0,7011 0/0:56,0:54:68.49:0,68,3256 0/1:75,0:73:15.10:15,0,4112 0/0:77,0:76:91.28:0,91,4340 0/0:31,0:30:42.36:0,42,1820 0/0:49,0:47:47.66:0,48,2792 0/0:42,0:42:68.50:0,69,2683 0/0:37,0:36:25.15:0,25,2141 0/0:40,0:37:8.79:0,9,2368 0/0:64,0:64:99:0,115,3812 0/0:56,0:55:82.47:0,82,3373 0/0:43,0:41:37.41:0,37,2232 0/0:44,0:44:68.51:0,69,3040 0/0:45,0:45:66.49:0,66,2952 0/0:63,0:61:99:0,102,4062 0/0:48,0:47:53.51:0,54,2753 0/0:54,0:52:31.37:0,31,3318 0/0:67,0:66:64.07:0,64,4027 0/0:32,0:32:81.27:0,81,2267 0/0:45,0:43:39.43:0,39,2888 17 46972643 . T G 210.54 . AC=6;AF=0.071;AN=84;BaseQRankSum=-13.929;DP=2429;Dels=0.00;FS=1366.418;HRun=2;HaplotypeScore=2.6775;InbreedingCoeff=-0.0905;MQ=54.28;MQ0=25;MQRankSum=-2.794;QD=0.49;ReadPosRankSum=-15.931 GT:AD:DP:GQ:PL 0/1:31,16:47:42.41:42,0,909 0/0:34,11:45:48.25:0,48,1090 0/0:28,11:39:34.83:0,35,851 0/0:74,29:103:99:0,216,2650 0/1:68,29:97:61.03:61,0,2146 0/0:44,29:73:57.89:0,58,1509 0/0:35,21:56:43.92:0,44,1140 0/0:47,18:65:93.44:0,93,1547 0/0:31,9:40:34.49:0,34,1047 0/0:28,8:36:28.12:0,28,948 0/0:32,9:41:66.80:0,67,1132 0/1:29,15:44:52.52:53,0,922 0/0:31,9:40:57.99:0,58,1014 0/1:32,14:46:48.04:48,0,985 0/0:99,42:141:0.58:8,0,2978 0/1:41,19:60:91.30:91,0,1270 0/0:36,15:51:73.97:0,74,1220 0/0:37,12:49:12.36:0,12,1205 0/0:50,13:63:99:0,142,1677 0/0:47,23:70:99:0,121,1675 0/0:55,14:69:99:0,113,1617 0/0:31,10:41:52.47:0,52,1001 0/1:86,50:136:17.23:17,0,2745 0/0:41,15:56:61.10:0,61,1390 0/0:51,24:75:15.94:0,16,1661 0/0:53,24:77:81.42:0,81,1849 0/0:22,9:31:28.84:0,29,689 0/0:36,13:49:63.17:0,63,1076 0/0:32,10:42:61.03:0,61,1072 0/0:28,9:37:15.86:0,16,876 0/0:32,8:40:23.79:0,24,941 0/0:46,18:64:99:0,107,1499 0/0:39,17:56:93.11:0,93,1333 0/0:29,14:43:25.12:0,25,870 0/0:39,5:44:99:0,105,1236 0/0:35,10:45:51.13:0,51,1213 0/0:53,10:63:47.16:0,47,1692 0/0:35,13:48:65.07:0,65,1074 0/0:42,12:54:67.02:0,67,1357 0/0:47,20:67:99:0,102,1545 0/0:26,6:32:52.58:0,53,902 0/0:40,5:45:99:0,111,1343 17 47000251 . C T 20340.46 . AC=39;AF=0.464;AN=84;BaseQRankSum=5.398;DP=1661;Dels=0.00;FS=7.193;HRun=0;HaplotypeScore=1.0482;InbreedingCoeff=-0.0051;MQ=58.95;MQ0=0;MQRankSum=-0.329;QD=17.02;ReadPosRankSum=-0.452 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,117,1368 0/0:34,0:34:90.26:0,90,1066 0/0:34,0:35:96.27:0,96,1118 0/1:25,24:49:99:634,0,765 0/1:33,25:58:99:663,0,797 0/1:17,16:33:99:427,0,513 0/0:41,0:41:99:0,102,1308 0/1:24,22:46:99:581,0,664 0/0:34,0:34:84.25:0,84,1023 0/0:29,0:29:75.19:0,75,885 0/0:27,0:27:69.21:0,69,851 0/1:13,18:31:99:474,0,322 0/1:11,19:30:99:493,0,266 0/1:18,9:27:99:224,0,504 0/1:71,43:114:99:1039,0,1857 0/1:15,10:25:99:291,0,393 1/1:0,30:30:84.25:1011,84,0 0/1:15,14:30:99:397,0,404 0/1:31,36:68:99:1003,0,716 0/0:52,0:52:99:0,138,1639 1/1:0,69:69:99:2076,166,0 1/1:2,41:43:69.58:1306,70,0 0/1:33,25:58:99:643,0,957 0/1:23,16:39:99:449,0,543 0/0:44,0:44:99:0,114,1467 0/1:22,14:36:99:316,0,607 0/1:16,14:30:99:394,0,422 1/1:0,26:26:69.21:843,69,0 0/1:14,6:20:99:152,0,435 1/1:0,23:23:63.19:759,63,0 1/1:0,35:35:90.23:1077,90,0 0/1:40,30:70:99:712,0,969 1/1:0,29:29:78.24:953,78,0 0/0:38,0:38:99:0,105,1207 0/1:18,12:30:99:319,0,493 0/0:34,0:34:99:0,99,1131 0/0:56,0:56:99:0,141,1662 0/1:16,12:28:99:295,0,421 0/1:14,18:32:99:482,0,354 1/1:0,26:26:78.23:929,78,0 0/1:17,10:27:99:287,0,448 1/1:0,33:33:90.28:1112,90,0 17 47041735 . A G 1671.29 . 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A G 1544.23 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.507;DP=2415;Dels=0.00;FS=2.395;HRun=1;HaplotypeScore=0.9285;InbreedingCoeff=-0.0244;MQ=58.19;MQ0=0;MQRankSum=1.607;QD=12.26;ReadPosRankSum=0.162 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,123,1572 0/0:55,0:55:99:0,147,1826 0/0:39,0:39:99:0,105,1338 0/0:109,0:109:99:0,289,3701 0/0:89,0:89:99:0,238,3091 0/1:37,26:63:99:751,0,1017 0/0:65,0:65:99:0,181,2328 0/1:32,31:63:99:855,0,829 0/0:54,0:54:99:0,144,1816 0/0:36,0:36:90.25:0,90,1130 0/0:40,0:40:99:0,105,1320 0/0:50,0:50:99:0,132,1644 0/0:45,0:45:99:0,129,1586 0/0:51,0:51:99:0,135,1715 0/0:147,0:147:99:0,373,4690 0/0:47,0:47:99:0,135,1682 0/0:60,0:60:99:0,159,1988 0/0:40,0:40:99:0,105,1332 0/0:67,0:67:99:0,184,2311 0/0:53,0:53:99:0,135,1725 0/0:73,0:73:99:0,196,2446 0/0:39,0:39:99:0,105,1303 0/0:113,0:113:99:0,283,3680 0/0:68,0:68:99:0,178,2276 0/0:85,0:85:99:0,211,2732 0/0:60,0:60:99:0,163,2094 0/0:33,0:33:84.27:0,84,1085 0/0:48,0:48:99:0,138,1712 0/0:46,0:46:99:0,114,1431 0/0:61,0:61:99:0,172,2109 0/0:37,0:37:99:0,99,1208 0/0:62,0:62:99:0,147,1881 0/0:51,0:51:99:0,129,1649 0/0:45,0:45:99:0,129,1605 0/0:45,0:45:99:0,123,1565 0/0:52,0:52:99:0,135,1702 0/0:58,0:58:99:0,163,2006 0/0:46,0:46:99:0,123,1552 0/0:37,0:37:99:0,105,1307 0/0:47,0:47:99:0,126,1554 0/0:41,0:41:99:0,105,1323 0/0:46,0:46:99:0,132,1672 17 47246163 . T C 3434.64 . 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T C 2045.76 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.960;DP=6135;DS;Dels=0.00;FS=1.920;HRun=1;HaplotypeScore=2.7703;InbreedingCoeff=-0.0244;MQ=59.31;MQ0=0;MQRankSum=-1.110;QD=12.03;ReadPosRankSum=-2.905 GT:AD:DP:GQ:PL 0/0:108,0:108:99:0,292,3629 0/0:104,0:104:99:0,286,3531 0/0:98,0:98:99:0,274,3394 0/0:250,0:250:99:0,716,8912 0/0:250,0:250:99:0,695,8750 0/0:250,0:250:99:0,689,8816 0/0:199,0:199:99:0,572,7175 0/0:187,0:187:99:0,536,6675 0/0:121,0:121:99:0,334,4131 0/0:99,0:100:99:0,265,3266 0/0:92,0:92:99:0,250,3095 0/0:80,0:80:99:0,229,2816 0/0:98,0:98:99:0,256,3212 0/1:41,39:80:99:1063,0,1211 0/0:250,0:250:99:0,707,8659 0/0:105,0:105:99:0,286,3542 0/0:124,0:125:99:0,349,4318 0/0:87,0:87:99:0,241,2938 0/0:212,0:213:99:0,569,7053 0/0:208,0:208:99:0,566,7003 0/0:195,0:196:99:0,533,6535 0/0:147,1:148:99:0,373,4943 0/0:249,1:250:99:0,728,9089 0/0:205,0:205:99:0,587,7346 0/0:243,0:243:99:0,674,8496 0/0:200,0:200:99:0,566,7073 0/0:75,0:75:99:0,214,2632 0/1:52,38:90:99:1046,0,1518 0/0:92,0:92:99:0,253,3119 0/0:89,0:90:99:0,250,3057 0/0:99,0:100:99:0,277,3432 0/0:216,0:216:99:0,578,7252 0/0:150,0:150:99:0,406,5052 0/0:112,0:112:99:0,313,3884 0/0:115,0:115:99:0,319,3970 0/0:125,0:125:99:0,346,4331 0/0:218,0:219:99:0,587,7296 0/0:129,0:129:99:0,346,4302 0/0:96,0:97:99:0,265,3273 0/0:101,0:101:99:0,292,3605 0/0:77,0:77:99:0,205,2538 0/0:99,0:99:99:0,271,3370 17 47284752 . C A 2821.46 . AC=1;AF=0.012;AN=84;BaseQRankSum=-7.236;DP=6042;DS;Dels=0.00;FS=31.157;HRun=2;HaplotypeScore=2.5189;InbreedingCoeff=-0.0120;MQ=59.40;MQ0=0;MQRankSum=1.836;QD=12.71;ReadPosRankSum=4.220 GT:AD:DP:GQ:PL 0/0:92,0:92:99:0,253,3183 0/0:103,0:104:99:0,271,3438 0/0:91,0:91:99:0,259,3278 0/0:249,1:250:99:0,692,9686 0/0:250,0:250:99:0,707,9749 0/0:250,0:250:99:0,707,9664 0/1:123,99:222:99:2868,0,4157 0/0:222,0:222:99:0,620,8387 0/0:117,0:117:99:0,322,4143 0/0:87,1:88:99:0,206,3004 0/0:86,0:86:99:0,229,2907 0/0:73,0:73:99:0,202,2589 0/0:92,0:92:99:0,244,3135 0/0:89,0:89:99:0,250,3179 0/0:250,0:250:99:0,677,8698 0/0:110,0:110:99:0,292,3714 0/0:120,0:120:99:0,319,4119 0/0:82,0:82:99:0,226,2853 0/0:208,0:208:99:0,566,7157 0/0:195,0:195:99:0,494,6367 0/0:187,1:188:99:0,515,6509 0/0:136,0:136:99:0,370,4740 0/0:250,0:250:99:0,719,9892 0/0:248,0:248:99:0,695,9466 0/0:250,0:250:99:0,692,9571 0/0:220,1:221:99:0,569,8173 0/0:71,0:71:99:0,196,2527 0/0:94,0:94:99:0,250,3157 0/0:91,0:91:99:0,250,3183 0/0:81,0:81:99:0,223,2855 0/0:87,0:87:99:0,247,3150 0/0:201,0:201:99:0,548,7034 0/0:139,0:139:99:0,376,4805 0/0:101,0:101:99:0,283,3567 0/0:115,0:115:99:0,313,4004 0/0:105,0:105:99:0,292,3762 0/0:204,0:204:99:0,566,7196 0/0:116,0:116:99:0,310,3969 0/0:92,0:92:99:0,244,3131 0/0:97,0:97:99:0,271,3463 0/0:83,0:83:99:0,220,2825 0/0:81,0:81:99:0,223,2861 17 47304042 . A C 400.17 . AC=9;AF=0.107;AN=84;BaseQRankSum=-34.410;DP=3930;DS;Dels=0.00;FS=631.649;HRun=1;HaplotypeScore=7.5709;InbreedingCoeff=-0.1400;MQ=59.18;MQ0=0;MQRankSum=0.479;QD=0.42;ReadPosRankSum=-12.678 GT:AD:DP:GQ:PL 0/1:50,33:83:31.82:32,0,1460 0/0:55,33:88:34.62:0,35,1653 0/0:45,5:50:99:0,100,1313 0/1:89,100:189:11.19:11,0,2308 0/1:61,82:143:63.23:63,0,1653 0/0:86,70:157:78.10:0,78,2323 0/0:62,58:120:25.94:0,26,1695 0/0:66,39:105:24.56:0,25,1674 0/0:43,28:71:81.96:0,82,1407 0/0:36,21:57:36.40:0,36,1081 0/0:40,28:68:99:0,108,1272 0/0:54,39:93:34.60:0,35,1556 0/0:44,27:71:66.98:0,67,1310 0/1:40,35:75:9.90:10,0,1138 0/0:150,99:250:55.68:0,56,4088 0/0:48,24:72:32.02:0,32,1405 0/0:39,20:59:65.64:0,66,1278 0/0:45,20:65:25.39:0,25,1338 0/0:54,8:62:99:0,125,1496 0/0:128,15:143:99:0,299,3718 0/1:44,45:89:99:195,0,1178 0/0:62,38:100:36.72:0,37,1806 0/0:128,37:165:99:0,236,3634 0/1:55,34:89:99:134,0,1424 0/1:84,61:145:14.75:15,0,2052 0/0:84,49:134:99:0,117,2115 0/0:28,18:46:3.32:0,3,844 0/0:56,24:80:71.25:0,71,1677 0/0:41,24:65:57.07:0,57,1217 0/0:42,33:75:50.48:0,50,1250 0/0:49,29:78:76.78:0,77,1508 0/0:84,42:126:0.59:8,0,2222 0/0:53,37:90:85.11:0,85,1528 0/0:59,6:65:99:0,129,1751 0/0:47,9:56:89.57:0,90,1223 0/0:45,30:75:5.35:0,5,1419 0/0:51,21:72:99:0,144,1733 0/0:47,34:81:28.25:0,28,1447 0/1:42,30:72:21.42:21,0,1192 0/1:45,32:77:38.77:39,0,1251 0/0:42,16:58:98.20:0,98,1325 0/0:34,24:58:9.96:0,10,983 17 47304042 . A AC 1866.85 . AC=20;AF=0.238;AN=84;BaseQRankSum=0.601;DP=4084;DS;FS=1595.279;HRun=1;HaplotypeScore=344.6602;InbreedingCoeff=-0.3328;MQ=59.26;MQ0=0;MQRankSum=2.633;QD=0.82;ReadPosRankSum=-33.636 GT:AD:DP:GQ:PL 0/1:83,0:83:41.68:42,0,1507 0/0:92,0:92:50.51:0,51,1928 0/0:43,15:58:21.37:0,21,1262 0/1:184,0:184:99:225,0,2593 0/1:144,0:144:99:212,0,1683 0/1:155,0:150:8.64:9,0,2592 0/1:120,0:117:37.96:38,0,1831 0/1:104,0:104:6.58:7,0,1669 0/0:75,0:75:60.76:0,61,1503 0/0:57,0:57:35.36:0,35,1212 0/0:69,1:70:86.30:0,86,1461 0/1:93,0:93:50.92:51,0,1829 0/0:73,0:73:33.04:0,33,1274 0/0:76,0:76:1.11:0,1,1316 0/1:249,1:250:99:166,0,4299 0/0:74,0:74:2.67:0,3,1551 0/0:58,0:58:2.29:2,0,1159 0/1:67,0:67:46.10:46,0,1418 0/1:56,25:81:99:175,0,1264 0/0:119,36:155:10.74:0,11,3469 0/1:95,0:95:99:261,0,1229 0/1:101,0:101:8.64:9,0,2141 0/1:111,90:200:99:431,0,2486 0/1:89,0:86:95.86:96,0,1600 0/1:148,1:145:7.02:7,0,2570 0/0:131,0:127:41.20:0,41,2399 0/0:47,1:48:14.91:0,15,927 0/0:83,0:83:63.87:0,64,1888 0/0:62,1:64:80.76:0,81,1359 0/0:79,4:83:19.47:0,19,1236 0/0:81,0:81:12.55:0,13,1549 0/0:125,0:125:5.04:0,5,2730 0/0:90,0:90:18.81:0,19,1812 0/1:54,26:80:27.65:28,0,1432 0/1:45,19:63:64.23:64,0,1070 0/0:77,0:77:4.60:0,5,1540 0/1:99,0:99:99:160,0,1652 0/0:85,0:85:56.07:0,56,1723 0/1:75,0:75:2.92:3,0,1434 0/0:80,0:80:6.97:0,7,1360 0/0:59,0:59:16.24:0,16,1279 0/1:56,0:56:2.55:3,0,1023 17 47783663 . C T 4718.44 . 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G C 1941.67 . 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C G 699.71 . 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G A 1894.69 . 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G A 2697.94 . 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C T 20925.13 . 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C T 550.43 . 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C T 3609.56 . AC=5;AF=0.060;AN=84;BaseQRankSum=-1.336;DP=1525;Dels=0.00;FS=10.018;HRun=2;HaplotypeScore=1.0307;InbreedingCoeff=-0.0633;MQ=59.18;MQ0=0;MQRankSum=0.373;QD=13.99;ReadPosRankSum=-0.900 GT:AD:DP:GQ:PL 0/0:27,0:27:78.22:0,78,930 0/0:19,0:19:54.15:0,54,642 0/0:25,0:25:72.19:0,72,835 0/1:43,28:71:99:752,0,1245 0/0:76,0:76:99:0,220,2818 0/1:28,34:62:99:986,0,747 0/0:44,0:44:99:0,123,1566 0/1:24,17:41:99:448,0,764 0/0:24,0:24:63.19:0,63,768 0/0:28,0:28:75.21:0,75,894 0/0:23,0:23:63.18:0,63,752 0/0:20,0:20:60.17:0,60,719 0/1:10,9:19:99:270,0,270 0/0:26,0:26:72.21:0,72,879 0/0:96,1:97:99:0,236,3127 0/0:26,0:26:78.22:0,78,914 0/0:28,0:28:81.23:0,81,977 0/0:24,0:24:72.22:0,72,869 0/0:40,0:41:99:0,108,1275 0/0:55,0:55:99:0,147,1770 0/0:57,1:58:99:0,153,1845 0/0:25,0:25:72.19:0,72,844 0/1:25,40:65:99:1154,0,675 0/0:52,0:52:99:0,147,1865 0/0:50,0:50:99:0,138,1786 0/0:45,0:45:99:0,120,1508 0/0:23,0:23:57.16:0,57,695 0/0:26,0:26:78.23:0,78,920 0/0:23,1:24:41.61:0,42,784 0/0:22,0:22:66.15:0,66,768 0/0:25,0:25:72.22:0,72,878 0/0:40,0:40:99:0,102,1243 0/0:36,0:36:99:0,105,1245 0/0:28,0:28:75.21:0,75,884 0/0:24,0:24:69.21:0,69,833 0/0:28,0:28:81.23:0,81,972 0/0:50,0:50:99:0,135,1640 0/0:26,0:26:75.20:0,75,873 0/0:28,0:28:81.21:0,81,959 0/0:19,0:19:51.15:0,51,610 0/0:29,0:29:78.22:0,78,933 0/0:26,0:26:72.21:0,72,845 17 48156873 . A C 19.27 . AC=1;AF=0.012;AN=84;BaseQRankSum=-16.810;DP=1313;Dels=0.00;FS=26.984;HRun=6;HaplotypeScore=2.1214;InbreedingCoeff=-0.0726;MQ=58.22;MQ0=0;MQRankSum=-0.947;QD=1.07;ReadPosRankSum=-2.437 GT:AD:DP:GQ:PL 0/0:20,4:24:57.13:0,57,641 0/0:12,6:19:8.34:0,8,267 0/0:14,5:20:36.07:0,36,371 0/0:50,29:81:81.11:0,81,1322 0/0:44,22:66:72.91:0,73,1231 0/0:41,10:51:57.98:0,58,1131 0/0:28,9:37:72.14:0,72,776 0/0:28,15:43:16.79:0,17,593 0/0:19,7:27:54.06:0,54,554 0/0:13,7:20:7.74:0,8,381 0/0:18,9:27:8.71:0,9,496 0/0:10,2:12:27.07:0,27,293 0/0:6,5:11:1.28:5,0,181 0/0:8,3:11:21.06:0,21,236 0/0:50,19:69:85.01:0,85,1415 0/0:17,6:23:48.11:0,48,525 0/0:14,3:17:42.06:0,42,447 0/0:12,6:18:36.03:0,36,365 0/0:27,14:41:40.39:0,40,791 0/0:43,10:54:37.57:0,38,1198 0/0:21,11:32:0.83:7,0,606 0/0:19,3:23:57.09:0,57,590 0/0:61,23:85:99:0,116,1754 0/0:30,15:45:29.83:0,30,777 0/0:37,7:45:93.19:0,93,999 0/0:35,16:51:90.16:0,90,969 0/0:9,6:15:0.43:0,0,261 0/0:9,3:12:2.71:1,0,224 0/0:18,6:24:54.12:0,54,602 0/0:14,4:18:42.05:0,42,441 0/0:10,9:19:0.20:13,0,287 0/0:39,15:55:99:0,108,1214 0/0:17,6:24:48.11:0,48,523 0/0:14,6:20:1.69:3,0,405 0/0:13,4:17:36.08:0,36,393 0/0:15,7:23:23.41:0,23,457 0/0:23,9:32:18.76:0,19,637 0/1:6,12:18:61.73:62,0,155 0/0:16,5:21:48.09:0,48,506 0/0:11,5:16:27.06:0,27,305 0/0:15,8:23:15.39:0,15,386 0/0:19,4:23:54.09:0,54,570 17 48158680 . A G 259.46 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.712;DP=534;Dels=0.00;FS=10.163;HRun=1;HaplotypeScore=0.3718;InbreedingCoeff=-0.0137;MQ=59.00;MQ0=0;MQRankSum=-0.243;QD=15.26;ReadPosRankSum=-0.101 GT:AD:DP:GQ:PL 0/0:13,0:13:36.11:0,36,451 0/0:19,0:19:48.15:0,48,614 0/0:10,0:10:30.09:0,30,373 0/0:16,0:16:42.13:0,42,532 0/0:10,0:10:24.08:0,24,315 0/0:10,0:10:24.08:0,24,317 0/0:10,0:10:18.06:0,18,250 0/0:15,0:15:36.11:0,36,456 0/0:11,0:11:30.08:0,30,361 0/0:10,0:10:24.08:0,24,308 0/0:22,0:22:60.18:0,60,740 0/0:11,0:11:30.10:0,30,380 0/0:10,0:10:24.08:0,24,313 0/0:9,0:9:27.08:0,27,330 0/0:35,0:35:93.29:0,93,1156 0/0:6,0:6:18.06:0,18,221 0/0:9,0:9:27.08:0,27,335 0/0:20,0:20:51.16:0,51,649 0/0:19,0:19:48.15:0,48,606 0/1:7,10:17:99:306,0,184 0/0:16,0:16:42.13:0,42,532 0/0:13,0:13:39.12:0,39,485 0/0:15,0:15:36.11:0,36,455 0/0:9,0:9:27.08:0,27,335 0/0:11,0:11:27.09:0,27,355 0/0:4,0:4:12.04:0,12,156 0/0:13,0:13:39.12:0,39,476 0/0:14,1:15:36.11:0,36,457 0/0:8,0:8:24.08:0,24,298 0/0:8,0:9:24.07:0,24,292 0/0:10,0:10:30.09:0,30,370 0/0:11,0:11:30.10:0,30,386 0/0:12,0:12:33.10:0,33,412 0/0:9,0:9:27.09:0,27,337 0/0:10,0:10:27.07:0,27,322 0/0:14,0:14:39.12:0,39,490 0/0:13,0:13:39.12:0,39,471 0/0:10,0:10:27.08:0,27,337 0/0:10,0:10:27.09:0,27,344 0/0:10,0:10:30.09:0,30,363 0/0:15,0:15:42.13:0,42,525 0/0:15,0:15:45.14:0,45,563 17 48158685 . C T 95.32 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.156;DP=528;Dels=0.00;FS=1.728;HRun=3;HaplotypeScore=0.3908;InbreedingCoeff=-0.0132;MQ=58.95;MQ0=0;MQRankSum=0.890;QD=10.59;ReadPosRankSum=-0.077 GT:AD:DP:GQ:PL 0/0:14,0:14:36.11:0,36,462 0/0:19,0:19:48.15:0,48,606 0/0:10,0:10:30.09:0,30,363 0/0:16,0:16:42.13:0,42,560 0/0:10,0:10:27.08:0,27,336 0/0:9,0:9:24.08:0,24,335 0/1:3,6:9:80.86:142,0,81 0/0:15,0:15:33.10:0,33,445 0/0:9,0:9:24.08:0,24,311 0/0:9,0:9:24.08:0,24,307 0/0:21,0:21:60.19:0,60,747 0/0:9,0:9:27.08:0,27,335 0/0:9,0:9:24.08:0,24,305 0/0:11,0:11:30.09:0,30,374 0/0:35,0:35:90.28:0,90,1137 0/0:7,0:7:21.07:0,21,259 0/0:9,0:9:27.08:0,27,331 0/0:19,0:19:51.16:0,51,657 0/0:20,0:20:51.13:0,51,618 0/0:18,0:18:48.15:0,48,618 0/0:15,0:15:36.11:0,36,455 0/0:13,0:13:39.12:0,39,486 0/0:16,0:17:42.14:0,42,562 0/0:8,0:8:24.08:0,24,328 0/0:11,0:11:27.09:0,27,371 0/0:5,0:5:15.05:0,15,204 0/0:10,0:10:30.09:0,30,368 0/0:14,0:14:39.12:0,39,498 0/0:7,0:7:21.07:0,21,262 0/0:10,0:10:24.08:0,24,307 0/0:10,0:10:30.10:0,30,379 0/0:11,0:11:30.09:0,30,374 0/0:11,0:11:30.09:0,30,379 0/0:11,0:11:33.10:0,33,407 0/0:9,0:10:21.07:0,21,268 0/0:14,0:14:39.12:0,39,494 0/0:14,0:14:42.12:0,42,509 0/0:11,0:11:30.10:0,30,381 0/0:10,0:10:27.09:0,27,345 0/0:11,0:11:33.09:0,33,395 0/0:14,0:14:39.12:0,39,484 0/0:13,0:13:39.12:0,39,496 17 48263177 . T TGGT 407.60 . AC=14;AF=0.167;AN=84;BaseQRankSum=4.830;DP=1789;FS=860.009;HRun=0;HaplotypeScore=201.5366;InbreedingCoeff=-0.2289;MQ=58.16;MQ0=0;MQRankSum=-0.058;QD=0.69;ReadPosRankSum=-15.913 GT:AD:DP:GQ:PL 0/1:41,0:42:6.47:6,0,709 0/0:43,0:43:29.39:0,29,985 0/0:30,0:30:60.14:0,60,906 0/0:85,0:93:76.05:0,76,2563 0/0:59,0:62:79.31:0,79,1803 0/0:57,0:55:68.40:0,68,1504 0/0:40,0:40:3.19:0,3,928 0/0:44,0:44:8.41:0,8,1182 0/0:37,0:37:2.70:1,0,925 0/1:36,0:36:20.73:21,0,605 0/0:27,0:27:63.22:0,63,1028 0/1:35,0:35:24.72:25,0,832 0/0:22,0:22:21.25:0,21,570 0/0:33,0:33:51.98:0,52,876 0/1:92,0:98:59.87:60,0,1945 0/0:47,0:47:23.16:0,23,1000 0/1:31,0:30:35.87:36,0,489 0/0:24,0:24:15.09:0,15,350 0/1:65,0:73:54.08:54,0,1636 0/0:60,0:64:47.47:0,47,1602 0/1:40,2:45:92.96:93,0,1145 0/0:36,0:36:40.09:0,40,815 0/0:71,0:74:42.28:0,42,1825 0/0:44,0:40:55.38:0,55,1286 0/0:50,1:49:53.42:0,53,1367 0/1:40,0:41:2.44:2,0,1089 0/1:28,0:28:47.63:48,0,634 0/0:31,0:31:22.33:0,22,832 0/1:27,0:27:28.97:29,0,429 0/0:34,0:34:16.22:0,16,751 0/1:41,0:41:14.51:15,0,850 0/0:54,0:54:53.42:0,53,1285 0/0:33,0:33:3.89:0,4,723 0/0:31,0:31:38.17:0,38,788 0/1:34,0:34:52.76:53,0,555 0/0:44,0:45:41.28:0,41,1377 0/0:37,0:43:2.30:2,0,1037 0/0:40,0:40:4.70:0,5,825 0/0:33,0:33:13.24:0,13,783 0/1:22,0:22:26.66:27,0,511 0/0:28,0:28:21.16:0,21,713 0/1:35,0:35:90.57:91,0,641 17 48263179 . T G 69.84 . AC=6;AF=0.071;AN=84;BaseQRankSum=-18.323;DP=1658;Dels=0.00;FS=266.702;HRun=1;HaplotypeScore=1.2594;InbreedingCoeff=-0.0852;MQ=58.36;MQ0=0;MQRankSum=-0.731;QD=0.42;ReadPosRankSum=-10.174 GT:AD:DP:GQ:PL 0/0:25,15:40:57.16:0,57,660 0/0:26,15:41:43.62:0,44,787 0/0:22,8:30:63.17:0,63,740 0/0:60,21:81:99:0,129,2018 0/0:40,17:57:99:0,102,1452 0/0:37,16:53:99:0,99,1196 0/0:23,16:39:39.57:0,40,789 0/0:27,17:44:43:0,43,794 0/1:22,11:33:17.62:18,0,666 0/0:20,12:33:1.90:0,2,570 0/0:23,4:27:63.19:0,63,756 0/0:22,11:33:8.96:0,9,675 0/0:17,4:21:45.14:0,45,543 0/0:22,10:32:57.17:0,57,693 0/0:52,32:84:33.30:0,33,1625 0/0:28,18:46:44.11:0,44,795 0/1:13,14:27:39.85:40,0,371 0/0:12,10:23:27.07:0,27,307 0/0:43,16:59:99:0,106,1493 0/0:45,14:59:80.29:0,80,1209 0/0:28,7:35:49.30:0,49,864 0/0:18,14:32:54.16:0,54,642 0/0:47,22:70:89.01:0,89,1573 0/0:30,14:44:50.83:0,51,983 0/0:36,13:49:93.24:0,93,1127 0/0:25,14:40:42.71:0,43,838 0/1:16,10:26:23.35:23,0,513 0/0:21,8:29:57.14:0,57,653 0/1:16,8:24:12.14:12,0,416 0/0:19,13:32:15.65:0,16,515 0/0:25,14:39:14.36:0,14,830 0/0:35,16:53:47.63:0,48,867 0/0:22,10:32:12.85:0,13,666 0/0:18,8:27:29.44:0,29,555 0/0:17,14:31:13.08:0,13,366 0/0:32,13:45:64.61:0,65,1042 0/0:27,5:33:69.20:0,69,813 0/0:23,17:40:19.88:0,20,713 0/0:19,14:33:29.46:0,29,540 0/1:13,10:23:19.98:20,0,368 0/0:18,7:25:26.49:0,26,583 0/1:19,15:34:59.26:59,0,417 17 48263356 . T G 144.23 . AC=8;AF=0.095;AN=84;BaseQRankSum=-9.165;DP=1136;Dels=0.00;FS=271.291;HRun=3;HaplotypeScore=0.5985;InbreedingCoeff=-0.1416;MQ=57.91;MQ0=1;MQRankSum=-0.216;QD=0.70;ReadPosRankSum=-4.983 GT:AD:DP:GQ:PL 0/1:11,6:17:18.25:18,0,294 0/0:16,6:22:15.62:0,16,478 0/1:12,7:19:6.90:7,0,283 0/0:42,24:67:20.46:0,20,1070 0/1:29,22:51:27.86:28,0,796 0/0:13,16:29:8.43:0,8,359 0/0:16,16:33:1.68:3,0,445 0/1:17,19:37:28.74:29,0,482 0/0:18,4:23:45.10:0,45,509 0/0:13,6:20:7.44:0,7,346 0/0:15,5:20:39.11:0,39,453 0/0:13,3:16:33.07:0,33,362 0/0:6,3:9:12:0,12,123 0/0:19,7:26:42.10:0,42,461 0/0:50,18:68:73.90:0,74,1456 0/0:18,7:26:0.81:0,1,488 0/0:12,6:18:4.73:0,5,377 0/1:13,11:24:58.80:59,0,313 0/0:28,5:34:78.20:0,78,917 0/0:28,14:42:27:0,27,619 0/0:18,4:22:48.15:0,48,578 0/0:12,8:20:33.08:0,33,377 0/0:29,22:52:21.89:0,22,745 0/0:20,8:29:7.34:0,7,456 0/0:24,8:32:54.14:0,54,629 0/0:19,11:32:16.46:0,16,452 0/0:13,2:16:9.49:0,9,401 0/0:13,2:15:39.11:0,39,458 0/0:12,3:15:27.08:0,27,312 0/0:16,5:21:45.13:0,45,530 0/0:15,4:19:30.08:0,30,347 0/0:38,9:47:74.48:0,74,1028 0/0:26,9:35:51.09:0,51,555 0/0:17,6:23:36.11:0,36,427 0/1:14,9:23:86.87:87,0,314 0/0:14,5:19:30.07:0,30,337 0/0:23,7:30:66.18:0,66,772 0/1:17,6:24:7.09:7,0,475 0/0:13,7:20:14.41:0,14,353 0/0:10,4:14:24.07:0,24,281 0/1:6,4:10:18.95:19,0,137 0/0:12,5:17:1.59:4,0,235 17 48263367 . G C 30.12 . AC=4;AF=0.048;AN=84;BaseQRankSum=-6.472;DP=1206;Dels=0.00;FS=42.089;HRun=2;HaplotypeScore=0.7423;InbreedingCoeff=-0.0917;MQ=57.33;MQ0=1;MQRankSum=0.513;QD=0.35;ReadPosRankSum=-6.223 GT:AD:DP:GQ:PL 0/1:7,9:16:13.61:14,0,130 0/0:13,7:20:2.34:1,0,297 0/0:16,4:20:1.75:0,2,349 0/0:48,18:66:69.13:0,69,1178 0/0:31,27:58:42.12:0,42,516 0/0:25,14:40:13.41:0,13,389 0/0:24,9:33:30.07:0,30,368 0/0:17,9:27:7.36:0,7,295 0/0:19,5:24:14.53:0,15,456 0/0:20,5:25:36.11:0,36,430 0/0:15,2:17:33.03:0,33,340 0/0:15,7:22:24.07:0,24,279 0/0:10,6:16:15.04:0,15,174 0/0:27,10:37:41.48:0,41,728 0/0:41,11:53:81.22:0,81,961 0/1:23,11:34:52.26:52,0,385 0/0:17,10:27:24.05:0,24,271 0/0:16,6:22:21.06:0,21,248 0/0:24,9:33:17.85:0,18,618 0/0:35,7:43:51.14:0,51,596 0/0:19,8:28:36.10:0,36,439 0/0:16,4:20:14.41:0,14,390 0/0:31,18:49:1.88:0,2,584 0/0:19,11:31:33.04:0,33,381 0/0:23,8:31:13.40:0,13,388 0/0:27,6:33:48.11:0,48,578 0/0:12,3:15:21.06:0,21,250 0/0:14,3:17:30.09:0,30,369 0/1:9,6:15:27.27:27,0,201 0/0:12,3:15:27.04:0,27,290 0/0:19,4:23:30.07:0,30,348 0/0:38,13:51:50.73:0,51,861 0/0:28,12:41:26.42:0,26,483 0/0:16,8:24:21.06:0,21,249 0/0:17,4:22:0.45:0,0,266 0/0:13,6:19:24.05:0,24,268 0/0:26,6:33:45.51:0,46,780 0/0:14,5:19:27.08:0,27,320 0/0:14,9:24:15.04:0,15,166 0/0:16,4:20:21.04:0,21,240 0/1:11,8:20:17.45:17,0,129 0/0:17,6:23:0.86:7,0,191 17 48265475 . A G 204.89 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.651;DP=322;Dels=0.00;FS=2.174;HRun=0;HaplotypeScore=0.2167;InbreedingCoeff=-0.0401;MQ=57.57;MQ0=0;MQRankSum=-0.396;QD=12.81;ReadPosRankSum=0.048 GT:AD:DP:GQ:PL 0/0:11,0:11:33.10:0,33,387 0/0:6,0:7:15.05:0,15,183 0/0:8,0:8:24.07:0,24,272 0/0:3,0:3:9.03:0,9,108 0/0:11,0:11:33.10:0,33,403 0/0:8,0:8:21.06:0,21,255 0/0:7,0:7:21.06:0,21,246 0/0:8,0:8:24.07:0,24,283 0/0:8,0:8:24.07:0,24,280 0/0:4,0:4:9.03:0,9,107 0/0:6,0:6:18.06:0,18,216 0/0:6,0:6:15.04:0,15,174 0/0:5,0:5:15.05:0,15,178 0/0:8,0:8:24.07:0,24,283 0/0:23,0:23:69.19:0,69,803 0/0:10,0:10:30.07:0,30,337 0/0:8,0:8:24.07:0,24,282 0/0:9,0:9:27.08:0,27,321 0/0:11,0:11:33.10:0,33,390 0/0:7,0:7:21.06:0,21,254 0/0:9,0:9:24.07:0,24,289 0/0:3,0:3:9.02:0,9,97 0/0:13,0:13:39.12:0,39,471 0/0:5,0:5:15.05:0,15,181 0/0:8,0:8:24.07:0,24,289 0/0:8,0:8:21.06:0,21,247 0/0:4,0:4:12.03:0,12,136 0/0:5,0:5:15.04:0,15,171 0/0:8,0:8:24.07:0,24,279 0/0:2,0:2:6.02:0,6,72 0/0:5,0:5:15.05:0,15,182 0/0:16,0:16:48.15:0,48,582 0/0:10,0:10:30.08:0,30,344 0/1:4,8:12:99:213,0,114 0/0:3,0:3:9.02:0,9,103 0/1:2,2:4:53.90:54,0,55 0/0:12,0:12:30.09:0,30,370 0/0:7,0:7:21.06:0,21,245 0/0:6,0:6:12.03:0,12,135 0/0:5,0:5:15.04:0,15,172 0/0:3,0:3:9.02:0,9,101 0/0:6,0:6:12.04:0,12,155 17 48265495 . T C 9033.59 . AC=82;AF=0.976;AN=84;BaseQRankSum=-2.249;DP=290;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2141;InbreedingCoeff=-0.0453;MQ=57.43;MQ0=0;MQRankSum=-1.338;QD=31.15;ReadPosRankSum=-1.237 GT:AD:DP:GQ:PL 1/1:0,11:11:33.08:351,33,0 1/1:0,6:6:18.05:196,18,0 0/1:5,3:8:81.36:81,0,156 1/1:0,3:3:9.03:110,9,0 1/1:0,10:10:30.08:350,30,0 1/1:0,4:4:9.03:117,9,0 1/1:0,7:7:21.03:232,21,0 1/1:0,8:8:21.07:267,21,0 1/1:0,8:8:24.06:258,24,0 1/1:0,4:4:12.03:130,12,0 1/1:0,3:3:9.01:94,9,0 1/1:0,10:10:30.07:321,30,0 1/1:0,4:4:12.03:137,12,0 1/1:0,4:4:12.03:131,12,0 1/1:0,18:18:54.12:582,54,0 1/1:0,10:10:30.07:314,30,0 1/1:0,6:6:18.05:206,18,0 1/1:0,4:4:12.03:130,12,0 1/1:0,6:6:12.03:139,12,0 1/1:0,6:6:18.05:208,18,0 1/1:0,3:3:9.02:98,9,0 1/1:0,6:6:15.04:172,15,0 1/1:0,12:12:36.10:429,36,0 1/1:0,6:6:15.01:160,15,0 1/1:0,10:10:27.08:327,27,0 1/1:0,8:8:24.06:265,24,0 0/1:1,3:4:24.95:85,0,25 1/1:0,4:4:12.03:129,12,0 1/1:0,6:6:18.05:197,18,0 1/1:0,3:3:9.02:103,9,0 1/1:0,6:6:18.05:205,18,0 1/1:0,13:13:36.10:418,36,0 1/1:0,9:9:27.07:293,27,0 1/1:0,9:9:27.07:296,27,0 1/1:0,4:4:12.03:123,12,0 1/1:0,10:10:30.07:322,30,0 1/1:0,15:15:39.10:429,39,0 1/1:0,5:5:15.04:160,15,0 1/1:0,4:4:12.03:134,12,0 1/1:0,2:2:6.01:61,6,0 1/1:0,3:3:6.01:63,6,0 1/1:0,8:8:18.05:210,18,0 17 48266534 . G A 1131.04 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.970;DP=1028;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.6913;InbreedingCoeff=-0.0245;MQ=59.21;MQ0=0;MQRankSum=0.707;QD=19.50;ReadPosRankSum=-1.040 GT:AD:DP:GQ:PL 0/0:16,0:16:45.14:0,45,560 0/0:10,0:10:24.07:0,24,280 0/0:18,0:18:48.15:0,48,606 0/0:58,0:58:99:0,166,2126 0/0:31,0:31:84.23:0,84,1061 0/0:54,0:54:99:0,150,1920 0/0:32,0:32:90.27:0,90,1162 0/0:33,0:33:87.28:0,87,1176 0/0:12,0:12:36.11:0,36,436 0/0:19,0:19:54.16:0,54,680 0/0:14,0:14:36.10:0,36,427 0/0:14,0:14:39.09:0,39,461 0/0:13,0:13:33.10:0,33,415 0/0:12,0:12:33.11:0,33,424 0/0:43,0:43:99:0,117,1396 0/0:15,0:15:36.11:0,36,443 0/0:13,0:13:39.10:0,39,471 0/1:6,6:12:99:172,0,178 0/1:14,32:46:99:1021,0,358 0/0:33,0:33:93.26:0,93,1169 0/0:25,0:25:63.19:0,63,773 0/0:33,0:33:90.26:0,90,1098 0/0:68,0:68:99:0,190,2466 0/0:18,0:18:54.17:0,54,706 0/0:39,0:39:99:0,114,1462 0/0:20,0:20:60.15:0,60,747 0/0:20,0:20:57.17:0,57,714 0/0:18,0:18:48.14:0,48,587 0/0:13,0:13:36.11:0,36,446 0/0:20,0:20:54.15:0,54,657 0/0:21,0:21:60.19:0,60,750 0/0:44,0:45:99:0,111,1396 0/0:20,0:20:57.16:0,57,679 0/0:20,0:20:57.17:0,57,694 0/0:12,0:12:36.11:0,36,441 0/0:16,0:16:45.11:0,45,529 0/0:31,0:31:87.26:0,87,1058 0/0:29,0:29:81.24:0,81,1025 0/0:19,0:19:48.15:0,48,585 0/0:13,0:13:36.10:0,36,436 0/0:17,0:17:51.16:0,51,630 0/0:13,0:13:36.12:0,36,466 17 48266623 . G T 456.87 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.664;DP=1486;Dels=0.00;FS=4.716;HRun=1;HaplotypeScore=0.9933;InbreedingCoeff=-0.0121;MQ=59.04;MQ0=0;MQRankSum=-0.406;QD=19.04;ReadPosRankSum=1.156 GT:AD:DP:GQ:PL 0/0:19,0:19:54.17:0,54,676 0/0:20,0:20:57.18:0,57,706 0/0:22,0:22:63.20:0,63,796 0/0:63,0:63:99:0,181,2359 0/0:66,0:66:99:0,190,2508 0/0:48,0:48:99:0,138,1806 0/0:33,0:33:93.27:0,93,1210 0/0:39,0:39:99:0,105,1395 0/0:24,0:24:66.21:0,66,842 0/0:20,0:21:57.16:0,57,681 0/0:22,0:22:63.19:0,63,777 0/0:18,0:18:54.17:0,54,672 0/0:18,0:18:48.14:0,48,591 0/0:25,1:26:39.11:0,39,863 0/0:96,0:96:99:0,262,3273 0/0:29,0:29:84.27:0,84,1069 0/0:27,0:27:78.24:0,78,974 0/0:28,0:29:84.26:0,84,1043 0/0:49,0:50:99:0,138,1678 0/0:60,0:60:99:0,156,1971 0/0:44,0:44:99:0,111,1365 0/0:50,0:50:99:0,144,1780 0/0:78,0:78:99:0,220,2919 0/0:31,0:31:90.29:0,90,1206 0/0:35,0:35:99:0,99,1265 0/0:38,0:38:99:0,108,1406 0/0:25,0:25:72.22:0,72,887 0/0:29,0:29:84.26:0,84,1033 0/1:7,17:24:99:503,0,164 0/0:19,0:19:57.17:0,57,697 0/0:33,0:33:96.29:0,96,1185 0/0:55,0:55:99:0,150,1907 0/0:29,0:29:78.19:0,78,951 0/0:33,0:33:87.26:0,87,1095 0/0:24,0:24:72.22:0,72,886 0/0:18,0:18:51.14:0,51,612 0/0:63,0:63:99:0,171,2112 0/0:21,0:21:60.18:0,60,724 0/0:29,0:29:78.25:0,78,989 0/0:30,0:30:72.23:0,72,921 0/0:20,0:20:60.19:0,60,734 0/0:28,0:28:78.24:0,78,982 17 48267238 . G A 82.69 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.608;DP=597;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5486;InbreedingCoeff=-0.0202;MQ=58.44;MQ0=0;MQRankSum=1.297;QD=6.89;ReadPosRankSum=-2.404 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,284 0/0:17,0:17:51.15:0,51,618 0/0:10,0:10:27.08:0,27,323 0/0:23,0:23:66.19:0,66,794 0/0:24,0:24:69.18:0,69,822 0/0:18,0:18:48.14:0,48,585 0/0:9,0:9:24.07:0,24,289 0/0:16,0:16:45.14:0,45,561 0/0:9,0:10:24.06:0,24,274 0/0:9,0:9:27.08:0,27,317 0/0:11,0:11:33.09:0,33,378 0/0:15,0:15:42.12:0,42,491 0/0:5,0:5:15.04:0,15,168 0/0:9,1:10:2.29:2,0,240 0/0:32,0:32:93.25:0,93,1078 0/0:18,0:18:54.15:0,54,621 0/0:13,0:13:39.08:0,39,426 0/0:9,0:9:27.08:0,27,320 0/0:14,0:15:39.11:0,39,442 0/0:16,0:16:39.11:0,39,447 0/0:21,0:21:60.17:0,60,696 0/0:16,0:16:42.11:0,42,475 0/0:22,0:22:63.19:0,63,783 0/0:16,0:16:45.14:0,45,556 0/0:12,0:12:36.09:0,36,425 0/0:15,0:15:42.13:0,42,535 0/0:7,0:7:21.05:0,21,237 0/0:16,0:16:45.12:0,45,530 0/0:15,0:15:45.14:0,45,541 0/0:13,0:13:39.12:0,39,474 0/0:11,0:11:33.09:0,33,376 0/0:24,0:24:60.16:0,60,702 0/0:12,0:12:36.09:0,36,397 0/0:13,0:13:36.08:0,36,396 0/0:7,0:7:21.05:0,21,230 0/0:7,0:7:21.05:0,21,231 0/0:20,0:20:57.14:0,57,644 0/1:7,5:12:99:129,0,220 0/0:10,0:10:30.06:0,30,319 0/0:11,0:11:30.09:0,30,354 0/0:12,0:12:33.10:0,33,389 0/0:17,0:17:45.11:0,45,518 17 48268223 . A G 53903.02 . AC=84;AF=1.000;AN=84;BaseQRankSum=-0.036;DP=1764;Dels=0.00;FS=8.183;HRun=1;HaplotypeScore=1.3264;InbreedingCoeff=-0.0000;MQ=59.30;MQ0=0;MQRankSum=-0.385;QD=30.56;ReadPosRankSum=0.600 GT:AD:DP:GQ:PL 1/1:0,36:36:96.21:1070,96,0 1/1:0,25:25:66.19:779,66,0 1/1:0,19:19:54.14:592,54,0 1/1:0,128:128:99:3861,307,0 1/1:0,103:103:99:3144,256,0 1/1:1,91:92:99:2632,174,0 1/1:0,42:43:99:1386,108,0 1/1:1,52:53:99:1654,138,0 1/1:0,26:26:66.17:760,66,0 1/1:0,22:22:66.17:734,66,0 1/1:0,25:25:69.18:777,69,0 1/1:0,32:32:81.21:932,81,0 1/1:0,22:22:60.16:681,60,0 1/1:0,23:23:60.12:671,60,0 1/1:1,95:97:99:2786,219,0 1/1:0,25:25:72.20:842,72,0 1/1:0,29:29:78.20:883,78,0 1/1:0,23:23:66.18:764,66,0 1/1:0,39:39:99:1227,102,0 1/1:0,47:47:99:1345,117,0 1/1:1,47:49:99:1473,129,0 1/1:0,25:25:72.19:822,72,0 1/1:0,101:101:99:3262,259,0 1/1:0,61:62:99:1877,150,0 1/1:0,77:77:99:2351,187,0 1/1:0,52:52:99:1604,132,0 1/1:0,23:23:66.17:749,66,0 1/1:0,19:19:54.13:597,54,0 1/1:0,27:27:78.20:871,78,0 1/1:0,30:30:75.19:864,75,0 1/1:0,21:21:51.13:591,51,0 1/1:0,49:49:99:1441,123,0 1/1:0,24:24:60.16:698,60,0 1/1:0,35:35:99:1139,102,0 1/1:0,28:28:75.20:854,75,0 1/1:0,32:33:87.24:1012,87,0 1/1:0,53:53:99:1630,147,0 1/1:0,32:32:87.24:1016,87,0 1/1:0,25:25:69.15:744,69,0 1/1:0,33:33:96.18:1038,96,0 1/1:0,26:26:69.18:792,69,0 1/1:0,31:31:84.22:957,84,0 17 48433958 . T C 29464 . AC=35;AF=0.417;AN=84;BaseQRankSum=-10.887;DP=2932;DS;Dels=0.00;FS=3.473;HRun=0;HaplotypeScore=4.1963;InbreedingCoeff=-0.0286;MQ=58.44;MQ0=0;MQRankSum=1.899;QD=15.32;ReadPosRankSum=-0.145 GT:AD:DP:GQ:PL 0/1:29,31:60:99:802,0,843 0/0:48,0:48:99:0,138,1647 0/1:28,20:48:99:532,0,700 0/1:74,92:166:99:2553,0,2011 0/1:71,51:122:99:1473,0,1963 0/0:90,0:90:99:0,265,3204 0/0:80,1:81:99:0,195,2739 0/0:86,0:86:99:0,232,2815 0/1:21,30:51:99:777,0,530 0/0:53,0:53:99:0,147,1780 1/1:0,42:42:99:1301,114,0 1/1:1,37:38:71.29:1121,71,0 1/1:0,39:39:99:1247,114,0 0/1:29,25:54:99:606,0,877 0/0:162,0:162:99:0,445,5268 0/0:57,0:57:99:0,156,1862 0/0:65,0:65:99:0,190,2268 1/1:0,54:54:99:1701,153,0 0/1:55,47:102:99:1181,0,1563 0/0:99,0:99:99:0,274,3217 0/1:45,38:84:99:992,0,1260 0/1:39,30:69:99:709,0,1013 0/1:90,60:150:99:1674,0,2578 1/1:0,57:57:99:1817,144,0 0/1:41,33:75:99:964,0,1133 0/1:41,40:81:99:1090,0,1110 0/0:40,0:40:99:0,114,1359 0/0:46,0:46:99:0,132,1552 0/0:54,0:54:99:0,153,1851 0/1:27,21:48:99:521,0,763 1/1:0,52:52:99:1674,147,0 0/1:49,41:90:99:1116,0,1318 0/0:69,0:69:99:0,199,2364 0/1:29,24:53:99:603,0,833 1/1:0,39:39:99:1264,114,0 0/0:59,0:59:99:0,168,2045 0/1:51,33:84:99:768,0,1441 0/1:32,25:57:99:595,0,876 0/1:24,28:52:99:708,0,684 0/1:31,30:61:99:718,0,946 0/1:25,16:41:99:372,0,752 0/1:30,24:54:99:586,0,890 17 48434517 . G C 692.60 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.565;DP=1275;Dels=0.00;FS=18.187;HRun=0;HaplotypeScore=1.3143;InbreedingCoeff=-0.0244;MQ=58.87;MQ0=0;MQRankSum=1.762;QD=11.94;ReadPosRankSum=1.169 GT:AD:DP:GQ:PL 0/0:19,0:19:51.16:0,51,645 0/0:24,0:24:72.22:0,72,887 0/0:21,0:21:63.17:0,63,767 0/0:76,0:76:99:0,211,2752 0/0:55,0:55:99:0,144,1885 0/1:19,12:31:99:310,0,569 0/1:12,15:27:99:445,0,362 0/0:27,0:27:78.25:0,78,1036 0/0:22,0:22:51.16:0,51,675 0/0:19,0:19:54.17:0,54,683 0/0:17,0:17:48.15:0,48,615 0/0:14,0:14:39.13:0,39,500 0/0:15,0:15:36.12:0,36,474 0/0:25,0:25:63.20:0,63,813 0/0:87,1:88:99:0,247,3047 0/0:30,0:30:87.27:0,87,1071 0/0:19,0:19:57.18:0,57,719 0/0:36,0:36:99:0,102,1283 0/0:34,0:34:93.29:0,93,1153 0/0:54,0:54:99:0,141,1805 0/0:22,0:22:60.18:0,60,744 0/0:25,0:25:72.22:0,72,899 0/0:52,0:52:99:0,147,1925 0/0:35,0:35:87.28:0,87,1164 0/0:45,0:45:99:0,123,1624 0/0:47,0:47:99:0,123,1586 0/0:21,0:21:60.19:0,60,773 0/0:24,0:24:66.21:0,66,839 0/0:22,0:22:63.19:0,63,784 0/0:22,0:22:57.16:0,57,675 0/0:20,0:20:54.15:0,54,666 0/0:45,0:46:99:0,129,1589 0/0:35,0:35:93.29:0,93,1190 0/0:18,0:18:51.14:0,51,642 0/0:15,0:15:42.11:0,42,509 0/0:18,0:18:48.15:0,48,614 0/0:43,0:43:99:0,108,1363 0/0:33,0:33:90.27:0,90,1129 0/0:16,0:16:48.14:0,48,591 0/0:27,0:27:75.23:0,75,943 0/0:21,0:21:57.17:0,57,720 0/0:14,0:14:39.12:0,39,498 17 48503627 . C T 11.98 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.369;DP=266;Dels=0.00;FS=12.302;HRun=1;HaplotypeScore=0.1952;InbreedingCoeff=-0.0615;MQ=58.84;MQ0=0;MQRankSum=1.558;QD=1.71;ReadPosRankSum=0.983 GT:AD:DP:GQ:PL 0/0:7,0:7:18.06:0,18,234 0/0:2,0:2:6.02:0,6,72 0/0:5,0:5:9.02:0,9,118 0/0:24,0:24:63.20:0,63,837 0/0:19,0:19:42.14:0,42,573 0/0:12,0:12:30.10:0,30,403 0/0:4,0:4:9.03:0,9,129 0/0:12,0:12:30.10:0,30,411 0/0:7,0:7:18.06:0,18,228 0/0:4,0:4:9.03:0,9,120 0/0:3,0:3:6.02:0,6,83 0/0:3,0:3:6.02:0,6,83 0/0:3,0:3:6.02:0,6,72 0/0:4,0:4:9.03:0,9,121 0/0:17,0:17:39.12:0,39,508 0/0:4,0:4:9.03:0,9,121 0/0:2,0:2:6.01:0,6,63 0/0:3,0:3:9.03:0,9,112 0/0:12,0:12:24.08:0,24,315 0/0:5,0:5:12.04:0,12,157 0/0:6,0:6:12.04:0,12,151 0/0:7,0:7:15.05:0,15,194 0/0:17,0:17:42.14:0,42,570 0/0:6,0:6:18.06:0,18,245 0/0:9,0:9:21.07:0,21,289 0/0:4,0:4:12.03:0,12,135 0/0:3,0:3:6.02:0,6,83 0/0:7,0:7:15.05:0,15,189 0/0:4,0:4:6.02:0,6,90 0/0:6,0:6:15.05:0,15,193 0/0:2,0:2:3.01:0,3,39 0/1:5,2:7:57.39:57,0,134 0/0:3,0:3:9.03:0,9,112 0/0:2,0:2:6.02:0,6,72 0/0:3,0:3:9.03:0,9,105 0/0:2,0:3:6.02:0,6,73 0/0:3,0:3:9.03:0,9,110 0/0:6,0:6:15.05:0,15,192 0/0:4,0:4:12.04:0,12,151 0/0:3,0:3:9.01:0,9,101 0/0:2,0:2:6.02:0,6,75 0/0:7,0:7:21.06:0,21,263 17 48503676 . G T 86.08 . AC=1;AF=0.012;AN=82;BaseQRankSum=1.345;DP=161;Dels=0.00;FS=2.212;HRun=0;HaplotypeScore=0.4458;InbreedingCoeff=-0.0950;MQ=58.69;MQ0=0;MQRankSum=-1.456;QD=14.35;ReadPosRankSum=-1.400 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,187 0/0:1,0:1:3.01:0,3,35 0/0:4,0:4:9.03:0,9,117 0/0:14,0:14:42.12:0,42,521 0/0:16,0:16:42.13:0,42,541 0/1:2,4:6:56.65:131,0,57 0/0:2,0:2:6.02:0,6,78 0/0:8,0:8:18.06:0,18,232 0/0:5,0:5:9.03:0,9,128 0/0:2,0:2:6.02:0,6,71 0/0:3,0:3:9.02:0,9,101 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:6.02:0,6,68 0/0:9,0:9:24.07:0,24,284 0/0:4,0:4:12.02:0,12,126 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,32 0/0:5,0:6:12.03:0,12,135 0/0:5,0:5:15.04:0,15,160 0/0:1,0:1:3:0,3,27 0/0:4,0:4:9.02:0,9,100 0/0:6,0:6:15.05:0,15,187 0/0:5,0:5:15.05:0,15,183 0/0:7,0:7:21.05:0,21,256 0/0:4,0:4:9.02:0,9,103 0/0:1,0:1:3.01:0,3,32 0/0:4,0:4:12.04:0,12,150 0/0:2,0:2:6.02:0,6,78 0/0:3,0:3:9.03:0,9,111 ./. 0/0:5,0:5:9.03:0,9,117 0/0:4,0:4:9.03:0,9,102 0/0:1,0:1:3.01:0,3,30 0/0:1,0:1:3.01:0,3,34 0/0:2,0:2:6:0,6,57 0/0:2,0:2:6.02:0,6,70 0/0:4,0:4:12.04:0,12,144 0/0:2,0:2:6.02:0,6,67 0/0:2,0:2:6.02:0,6,74 0/0:2,0:2:6:0,6,56 0/0:3,0:3:9.03:0,9,105 17 48503677 . G T 77.22 . AC=1;AF=0.013;AN=80;BaseQRankSum=-0.897;DP=163;Dels=0.00;FS=2.128;HRun=0;HaplotypeScore=0.4808;InbreedingCoeff=-0.0913;MQ=58.71;MQ0=0;MQRankSum=1.186;QD=12.87;ReadPosRankSum=-1.509 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,189 0/0:1,0:1:3.01:0,3,36 0/0:4,0:4:9.03:0,9,113 0/0:13,0:13:33.08:0,33,402 0/0:18,0:18:51.09:0,51,622 0/1:2,4:6:60.97:122,0,61 0/0:2,0:2:6.02:0,6,80 0/0:8,0:8:21.06:0,21,267 0/0:5,0:5:9.03:0,9,129 0/0:2,0:2:6.02:0,6,78 0/0:3,0:3:9.02:0,9,98 0/0:1,0:1:3.01:0,3,39 ./. 0/0:2,0:2:6.02:0,6,75 0/0:9,0:9:27.07:0,27,312 0/0:4,0:4:6.02:0,6,73 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,32 0/0:6,0:6:15.04:0,15,174 0/0:5,0:5:15.04:0,15,185 0/0:1,0:1:3:0,3,27 0/0:4,0:4:12.03:0,12,132 0/0:6,0:6:15.03:0,15,170 0/0:5,0:5:15.04:0,15,189 0/0:8,0:8:21.06:0,21,263 0/0:4,0:4:12.03:0,12,126 0/0:1,0:1:3.01:0,3,35 0/0:4,0:4:12.04:0,12,153 0/0:2,0:2:6.02:0,6,78 0/0:3,0:3:9.03:0,9,114 ./. 0/0:6,0:6:12.04:0,12,151 0/0:4,0:4:12.04:0,12,143 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,36 0/0:2,0:2:6.01:0,6,65 0/0:2,0:2:6.02:0,6,76 0/0:4,0:4:12.04:0,12,153 0/0:2,0:2:6.02:0,6,72 0/0:2,0:2:6.02:0,6,77 0/0:2,0:2:6.02:0,6,72 0/0:3,0:3:9.03:0,9,116 17 48600307 . T G 7.72 . AC=1;AF=0.012;AN=84;BaseQRankSum=-27.672;DP=3149;Dels=0.00;FS=170.631;HRun=2;HaplotypeScore=1.4418;InbreedingCoeff=-0.0294;MQ=58.76;MQ0=0;MQRankSum=5.010;QD=0.10;ReadPosRankSum=-9.450 GT:AD:DP:GQ:PL 0/0:49,18:69:99:0,104,1441 0/0:40,23:63:99:0,101,1093 0/0:42,13:55:84.57:0,85,1192 0/0:64,44:108:89.55:0,90,1827 0/0:70,45:115:99:0,167,2132 0/0:61,38:99:99:0,138,1902 0/0:71,30:101:99:0,128,1984 0/0:62,27:89:99:0,149,1909 0/0:38,18:56:72.55:0,73,1063 0/0:34,26:61:35.53:0,36,922 0/0:30,20:51:75.21:0,75,882 0/0:45,14:59:61.19:0,61,1249 0/0:41,18:60:74.56:0,75,1089 0/0:40,19:61:48.12:0,48,1119 0/0:131,88:220:1.42:0,1,3714 0/0:36,19:55:60.72:0,61,992 0/0:44,23:67:95.63:0,96,1337 0/0:34,26:61:12.40:0,12,910 0/1:50,29:80:51.91:52,0,1320 0/0:65,13:78:99:0,151,1885 0/0:45,29:74:54.49:0,54,1325 0/0:51,13:64:99:0,150,1667 0/0:76,56:132:99:0,154,2223 0/0:58,27:86:80.78:0,81,1567 0/0:73,31:106:99:0,156,2100 0/0:65,17:83:99:0,130,1784 0/0:24,11:37:32.45:0,32,635 0/0:33,21:55:29.90:0,30,871 0/0:35,21:56:58.46:0,58,909 0/0:44,12:56:69.60:0,70,1081 0/0:35,29:64:41.85:0,42,959 0/0:78,23:101:99:0,168,2265 0/0:52,15:67:99:0,138,1478 0/0:39,27:66:54.91:0,55,1070 0/0:39,13:52:99:0,102,1153 0/0:42,34:77:0.34:11,0,1158 0/0:40,33:73:29.66:0,30,1050 0/0:45,22:68:99:0,108,1422 0/0:42,13:55:63.33:0,63,1257 0/0:33,28:61:47.58:0,48,945 0/0:33,18:51:66.51:0,67,956 0/0:37,18:56:99:0,99,1074 17 48616271 . C T 35.80 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.640;DP=711;Dels=0.00;FS=2.555;HRun=0;HaplotypeScore=0.7944;InbreedingCoeff=-0.0148;MQ=58.62;MQ0=0;MQRankSum=0.141;QD=5.11;ReadPosRankSum=-0.734 GT:AD:DP:GQ:PL 0/0:15,0:15:42.11:0,42,476 0/0:5,0:5:12.03:0,12,134 0/0:5,0:5:12.04:0,12,148 0/0:38,0:38:99:0,105,1264 0/0:37,0:38:93.29:0,93,1237 0/0:36,0:36:81.24:0,81,1055 0/0:18,0:19:42.12:0,42,541 0/0:31,0:31:84.24:0,84,1034 0/0:9,0:9:27.05:0,27,291 0/1:4,3:7:81.98:82,0,112 0/0:4,0:4:12.03:0,12,134 0/0:19,0:19:48.14:0,48,577 0/0:10,0:10:24.07:0,24,281 0/0:12,0:12:36.10:0,36,414 0/0:33,0:33:90.24:0,90,1041 0/0:12,0:12:33.07:0,33,367 0/0:13,0:13:39.10:0,39,453 0/0:11,0:11:33.09:0,33,379 0/0:19,0:19:54.11:0,54,605 0/0:24,0:24:60.18:0,60,724 0/0:12,0:12:30.09:0,30,356 0/0:13,0:13:27.08:0,27,349 0/0:46,0:47:99:0,120,1553 0/0:19,0:19:51.16:0,51,647 0/0:20,0:20:51.15:0,51,645 0/0:20,0:20:45.11:0,45,580 0/0:13,0:13:33.09:0,33,392 0/0:9,0:9:27.06:0,27,292 0/0:12,0:12:33.08:0,33,385 0/0:9,0:9:21.05:0,21,242 0/0:9,0:9:27.08:0,27,332 0/0:32,0:32:81.23:0,81,989 0/0:24,0:24:60.17:0,60,725 0/0:13,0:13:39.10:0,39,432 0/0:14,0:14:42.10:0,42,473 0/0:10,0:10:30.07:0,30,328 0/0:19,0:19:57.15:0,57,652 0/0:16,0:16:48.12:0,48,539 0/0:12,0:12:24.07:0,24,298 0/0:11,0:11:30.07:0,30,331 0/0:9,0:9:21.05:0,21,239 0/0:8,0:8:21.05:0,21,234 17 48624638 . G A 39.44 . AC=2;AF=0.043;AN=46;BaseQRankSum=2.662;DP=45;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.2126;InbreedingCoeff=-0.0151;MQ=56.73;MQ0=0;MQRankSum=0.132;QD=7.89;ReadPosRankSum=-0.079 GT:AD:DP:GQ:PL 0/0:2,0:2:3.01:0,3,31 0/0:2,0:2:6.02:0,6,65 0/0:1,0:1:3.01:0,3,33 ./. ./. ./. ./. 0/0:1,0:1:3.01:0,3,34 0/0:1,0:1:3:0,3,27 0/0:3,0:3:9.02:0,9,92 0/0:1,0:1:3.01:0,3,33 0/0:1,0:1:3.01:0,3,32 ./. 0/0:1,0:1:3.01:0,3,34 0/1:2,2:4:52.95:60,0,53 0/1:0,1:1:1.76:35,3,0 0/0:1,0:1:3.01:0,3,32 ./. ./. 0/0:2,0:2:3.01:0,3,32 0/0:5,0:5:12.03:0,12,129 0/0:2,0:2:5.99:0,6,55 ./. ./. ./. ./. ./. 0/0:2,0:2:6.01:0,6,62 ./. ./. 0/0:1,0:1:3.01:0,3,35 0/0:4,0:4:9.02:0,9,100 0/0:2,0:2:6.02:0,6,68 ./. ./. 0/0:2,0:2:6:0,6,55 ./. ./. 0/0:1,0:1:3.01:0,3,34 ./. 0/0:2,0:2:6.02:0,6,65 0/0:1,0:1:2.99:0,3,24 17 48625928 . C G 9764.52 . AC=29;AF=0.345;AN=84;BaseQRankSum=3.981;DP=1100;Dels=0.00;FS=9.107;HRun=0;HaplotypeScore=0.6763;InbreedingCoeff=-0.0017;MQ=59.19;MQ0=1;MQRankSum=0.246;QD=17.31;ReadPosRankSum=-0.983 GT:AD:DP:GQ:PL 1/1:0,26:26:78.25:988,78,0 1/1:0,21:21:63.19:774,63,0 1/1:0,16:16:45.14:568,45,0 0/0:47,0:47:99:0,135,1752 0/1:22,17:39:99:545,0,712 0/0:19,0:19:57.18:0,57,752 0/1:12,3:15:80.86:81,0,400 0/0:27,0:27:75.24:0,75,990 0/1:11,9:20:99:280,0,352 0/1:6,9:15:99:293,0,181 0/0:22,0:22:60.18:0,60,734 0/0:21,0:21:63.17:0,63,757 0/0:19,0:19:51.14:0,51,606 0/1:16,10:26:99:297,0,496 0/0:86,0:87:99:0,247,3017 0/0:23,0:23:69.21:0,69,845 0/0:25,0:25:72.19:0,72,875 0/1:13,6:19:99:177,0,338 0/0:38,0:38:99:0,114,1339 0/1:22,23:45:99:674,0,588 0/1:18,14:32:99:424,0,455 0/1:12,12:24:99:381,0,356 0/0:47,0:47:99:0,141,1850 0/0:18,0:18:51.17:0,51,694 0/0:23,0:23:57.19:0,57,779 0/1:15,4:19:99:105,0,465 1/1:1,17:18:18.04:607,18,0 0/1:20,13:33:99:379,0,620 0/1:7,8:15:99:229,0,192 0/0:20,0:20:54.16:0,54,647 0/1:9,6:15:99:166,0,286 1/1:0,36:36:90.29:1166,90,0 0/0:34,0:34:90.28:0,90,1120 0/1:13,10:23:99:281,0,354 0/1:10,8:18:99:251,0,279 0/1:13,5:18:99:139,0,428 0/1:14,16:30:99:485,0,375 0/1:15,10:25:99:301,0,398 0/0:23,0:23:63.19:0,63,764 0/0:17,0:17:48.15:0,48,588 0/1:10,6:16:99:174,0,298 0/0:26,0:26:72.22:0,72,901 17 48628092 . A G 25855.28 . AC=22;AF=0.262;AN=84;BaseQRankSum=9.701;DP=3677;Dels=0.00;FS=2.029;HRun=1;HaplotypeScore=2.8252;InbreedingCoeff=-0.1085;MQ=58.53;MQ0=0;MQRankSum=1.116;QD=16.55;ReadPosRankSum=-0.370 GT:AD:DP:GQ:PL 0/1:21,27:48:99:786,0,608 0/1:27,37:64:99:1137,0,788 0/0:56,0:56:99:0,166,2053 0/0:179,0:179:99:0,494,6231 0/1:78,74:152:99:2393,0,2284 0/0:125,0:125:99:0,352,4572 0/1:64,61:125:99:1815,0,1913 0/0:130,0:130:99:0,355,4511 0/1:37,32:70:99:957,0,1063 0/1:25,21:46:99:643,0,753 0/0:84,1:85:99:0,202,2870 0/0:63,0:63:99:0,181,2240 0/0:46,0:46:99:0,129,1596 0/0:67,0:67:99:0,196,2410 0/0:158,0:159:99:0,406,5056 0/0:86,0:86:99:0,247,3027 0/0:61,0:61:99:0,178,2180 0/0:66,0:66:99:0,184,2233 0/0:128,0:128:99:0,358,4371 0/1:65,61:127:99:1866,0,1857 0/1:60,57:117:99:1514,0,1685 0/0:85,0:85:99:0,241,2940 0/0:192,1:193:99:0,533,7014 0/0:118,0:118:99:0,298,3818 0/0:127,1:128:99:0,308,4395 0/1:59,40:99:99:1219,0,1745 1/1:0,57:57:99:1983,159,0 0/1:33,27:60:99:799,0,1031 0/1:25,26:51:99:785,0,715 0/0:51,0:51:99:0,138,1710 0/1:22,30:52:99:867,0,660 1/1:0,122:122:99:4231,337,0 0/0:83,0:83:99:0,229,2813 0/1:25,25:50:99:749,0,746 0/1:33,29:62:99:867,0,989 0/1:39,25:64:99:738,0,1190 0/1:55,39:94:99:1079,0,1591 0/1:21,23:44:99:696,0,628 0/0:77,0:77:99:0,229,2736 0/0:63,0:63:99:0,181,2222 0/1:34,24:58:99:732,0,1004 0/0:66,0:66:99:0,190,2296 17 48628154 . C T 1517.44 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.018;DP=4374;DS;Dels=0.00;FS=2.443;HRun=0;HaplotypeScore=4.1954;InbreedingCoeff=-0.0244;MQ=58.83;MQ0=0;MQRankSum=0.222;QD=12.54;ReadPosRankSum=-1.193 GT:AD:DP:GQ:PL 0/0:71,1:72:99:0,176,2308 0/1:23,28:52:99:775,0,574 0/1:41,28:69:99:805,0,1064 0/0:233,0:233:99:0,692,8641 0/0:201,0:201:99:0,569,7200 0/0:177,0:177:99:0,509,6399 0/0:149,0:149:99:0,421,5282 0/0:156,0:156:99:0,436,5436 0/0:60,0:60:99:0,165,1914 0/0:47,0:47:99:0,126,1420 0/0:73,0:73:99:0,211,2449 0/0:75,0:75:99:0,217,2559 0/0:67,0:67:99:0,190,2238 0/0:77,0:78:99:0,208,2413 0/0:196,0:197:99:0,544,6271 0/0:91,0:91:99:0,247,2830 0/0:74,0:74:99:0,217,2480 0/0:53,0:53:99:0,147,1688 0/0:123,0:124:99:0,334,3855 0/0:156,0:156:99:0,433,5094 0/0:147,1:149:99:0,367,4564 0/0:100,0:100:99:0,271,3186 0/0:247,0:248:99:0,716,9083 0/0:143,0:143:99:0,412,5248 0/0:154,0:154:99:0,442,5621 0/0:142,0:142:99:0,397,4919 0/0:59,0:59:99:0,168,1956 0/0:64,0:64:99:0,177,2037 0/0:73,0:73:99:0,211,2464 0/0:64,0:64:99:0,184,2146 0/0:60,0:60:99:0,165,1942 0/0:115,0:115:99:0,298,3464 0/0:117,0:117:99:0,316,3707 0/0:59,0:59:99:0,174,2001 0/0:65,0:65:99:0,187,2154 0/0:99,0:99:99:0,283,3301 0/0:94,0:94:99:0,256,2977 0/0:67,0:67:99:0,183,2107 0/0:81,0:81:99:0,223,2543 0/0:74,0:74:99:0,208,2428 0/0:69,0:69:99:0,190,2169 0/0:73,1:74:99:0,211,2428 17 48628160 . A G 3881.30 . AC=3;AF=0.036;AN=84;BaseQRankSum=10.670;DP=4215;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7228;InbreedingCoeff=-0.0370;MQ=58.88;MQ0=0;MQRankSum=1.298;QD=13.20;ReadPosRankSum=2.303 GT:AD:DP:GQ:PL 0/0:70,0:70:99:0,205,2471 0/0:48,0:48:99:0,138,1635 0/0:68,0:68:99:0,190,2308 0/0:223,0:223:99:0,656,8066 0/0:200,0:200:99:0,575,7281 0/0:172,0:172:99:0,478,6155 0/0:143,0:143:99:0,406,5139 0/0:146,0:146:99:0,406,5026 0/0:59,0:59:99:0,172,2072 0/0:47,0:47:99:0,138,1630 0/0:69,0:69:99:0,202,2446 0/1:43,30:73:99:916,0,1277 0/0:69,0:69:99:0,196,2386 0/1:45,25:71:99:680,0,1366 0/0:188,0:188:99:0,527,6359 0/0:88,0:90:99:0,256,3039 0/0:72,0:72:99:0,208,2517 0/0:52,0:52:99:0,153,1856 0/0:115,0:116:99:0,316,3883 0/0:146,0:146:99:0,412,5056 0/0:140,0:141:99:0,382,4655 0/0:97,0:97:99:0,271,3282 0/0:241,0:241:99:0,701,8741 0/0:138,0:138:99:0,400,5042 0/1:81,69:150:99:2285,0,2514 0/0:138,0:138:99:0,385,4805 0/0:59,0:60:99:0,172,2099 0/0:59,0:60:99:0,159,1900 0/0:68,0:69:99:0,193,2356 0/0:60,0:60:99:0,172,2094 0/0:59,0:59:99:0,166,2029 0/0:110,0:110:99:0,307,3789 0/0:115,0:115:99:0,319,3878 0/0:64,0:64:99:0,190,2280 0/0:60,0:60:99:0,175,2133 0/0:91,0:91:99:0,259,3125 0/0:89,0:89:99:0,244,3005 0/0:68,0:68:99:0,190,2270 0/0:82,0:82:99:0,232,2800 0/0:68,0:68:99:0,196,2384 0/0:62,0:62:99:0,181,2196 0/0:71,0:71:99:0,208,2548 17 48628203 . C G 7.23 . AC=2;AF=0.024;AN=84;BaseQRankSum=-13.858;DP=3496;DS;Dels=0.00;FS=438.104;HRun=1;HaplotypeScore=4.6674;InbreedingCoeff=-0.0468;MQ=58.73;MQ0=1;MQRankSum=1.009;QD=0.03;ReadPosRankSum=-12.910 GT:AD:DP:GQ:PL 0/0:32,16:49:45.87:0,46,800 0/0:23,12:35:33.07:0,33,361 0/0:39,9:48:56.49:0,56,835 0/1:149,76:225:21.85:22,0,2881 0/0:119,44:163:99:0,130,2774 0/0:113,43:156:99:0,195,2681 0/0:81,34:116:78.61:0,79,1533 0/0:89,28:117:99:0,168,1990 0/0:50,20:70:60.32:0,60,1240 0/0:37,11:48:62.55:0,63,962 0/0:35,14:49:12.61:0,13,661 0/0:37,21:59:32.01:0,32,1008 0/0:43,15:58:80.62:0,81,872 0/0:37,12:49:0.23:13,0,833 0/0:122,8:131:99:0,226,2839 0/0:57,18:75:80.88:0,81,1250 0/0:42,16:58:48.96:0,49,907 0/0:31,13:44:57.14:0,57,663 0/0:67,25:94:76.38:0,76,1732 0/0:107,29:136:77.88:0,78,2127 0/0:64,24:89:25.46:0,25,1582 0/0:69,25:95:99:0,104,1399 0/0:137,70:207:74.96:0,75,2981 0/0:90,35:125:99:0,122,2008 0/0:83,33:119:99:0,105,1739 0/0:88,27:115:99:0,135,1958 0/1:35,15:50:42.49:42,0,825 0/0:36,12:49:47.53:0,48,760 0/0:41,15:56:87.21:0,87,991 0/0:44,14:59:74.03:0,74,1041 0/0:37,14:51:74.68:0,75,840 0/0:96,14:110:99:0,161,2084 0/0:82,26:108:79.50:0,79,1578 0/0:32,6:38:72.16:0,72,815 0/0:28,12:40:1.21:5,0,563 0/0:34,16:50:69.16:0,69,776 0/0:61,26:87:70.05:0,70,1640 0/0:36,8:44:69.16:0,69,782 0/0:46,16:64:99:0,103,1325 0/0:41,14:57:51.83:0,52,1011 0/0:44,12:56:96.23:0,96,1074 0/0:32,15:47:69.15:0,69,778 17 48628203 . C CG 31.97 . AC=1;AF=0.012;AN=84;BaseQRankSum=5.479;DP=3664;DS;FS=749.028;HRun=1;HaplotypeScore=382.3320;InbreedingCoeff=-0.0409;MQ=58.33;MQ0=1;MQRankSum=-1.543;QD=0.31;ReadPosRankSum=-20.974 GT:AD:DP:GQ:PL 0/0:51,0:51:49.49:0,49,1006 0/0:37,0:37:42.26:0,42,471 0/0:48,0:48:78.15:0,78,947 0/0:231,0:231:36.40:0,36,3279 0/0:170,0:170:99:0,124,2933 0/0:153,0:153:99:0,166,2619 0/0:115,0:113:64.91:0,65,1589 0/0:120,0:118:99:0,147,1998 0/0:73,0:72:99:0,111,1619 0/0:46,0:47:39.41:0,39,1063 0/0:53,0:53:15.90:0,16,813 0/0:62,0:62:0.43:10,0,1116 0/0:56,0:56:10.70:0,11,965 0/0:56,0:56:17.14:0,17,977 0/0:129,46:175:69.07:0,69,2556 0/0:74,0:74:62.27:0,62,1445 0/0:58,1:59:42.15:0,42,940 0/0:49,0:49:73.41:0,73,902 0/0:96,1:97:27.60:0,28,1825 0/0:146,0:145:99:0,144,2903 0/1:103,0:103:85.85:86,0,1475 0/0:97,0:97:79.36:0,79,1727 0/0:219,0:219:41.86:0,42,3143 0/0:129,0:126:99:0,110,2027 0/0:127,1:125:99:0,103,1834 0/0:121,0:115:99:0,110,2055 0/0:51,0:51:2.09:2,0,956 0/0:52,0:51:44.29:0,44,949 0/0:59,0:59:24.70:0,25,1019 0/0:63,0:63:33.43:0,33,1252 0/0:54,0:54:63.73:0,64,992 0/0:110,0:109:99:0,124,2602 0/0:108,0:108:99:0,134,2072 0/0:41,0:41:72.23:0,72,925 0/0:41,0:41:58.82:0,59,804 0/0:52,0:52:79.21:0,79,941 0/0:90,0:90:1.87:3,0,1597 0/0:48,0:48:84.31:0,84,1096 0/0:63,0:63:60.50:0,60,1395 0/0:57,0:57:80.24:0,80,1141 0/0:57,0:57:99:0,108,1292 0/0:49,0:49:69.04:0,69,821 17 48628242 . C T 1744.48 . AC=1;AF=0.012;AN=84;BaseQRankSum=7.002;DP=3632;Dels=0.00;FS=10.466;HRun=0;HaplotypeScore=2.4486;InbreedingCoeff=-0.0120;MQ=59.21;MQ0=1;MQRankSum=1.335;QD=14.18;ReadPosRankSum=0.333 GT:AD:DP:GQ:PL 0/0:62,0:62:99:0,180,1949 0/0:52,0:52:99:0,147,1569 0/0:45,0:45:99:0,129,1377 0/0:204,0:204:99:0,584,6904 0/0:152,0:152:99:0,424,5071 0/0:135,2:137:99:0,346,4598 0/0:113,0:113:99:0,316,3773 0/1:62,61:123:99:1791,0,1676 0/0:55,0:56:99:0,153,1679 0/0:45,0:45:99:0,132,1444 0/0:51,0:52:99:0,147,1626 0/0:68,0:68:99:0,183,2051 0/0:53,0:53:99:0,150,1643 0/0:54,0:55:99:0,153,1696 0/0:199,0:200:99:0,511,5916 0/0:77,0:77:99:0,217,2391 0/0:60,0:60:99:0,168,1829 0/0:61,0:61:99:0,168,1882 0/0:123,0:123:99:0,334,3640 0/0:141,0:141:99:0,382,4325 0/0:107,0:107:99:0,277,3145 0/0:87,0:87:99:0,250,2673 0/0:201,0:201:99:0,563,6792 0/0:100,0:100:99:0,289,3450 0/0:122,0:122:99:0,337,4088 0/0:106,0:106:99:0,292,3434 0/0:52,0:52:99:0,150,1674 0/0:54,0:54:99:0,153,1687 0/0:68,0:68:99:0,183,2036 0/0:66,0:66:99:0,177,2018 0/0:50,0:50:99:0,147,1625 0/0:101,0:102:99:0,247,2842 0/0:92,0:92:99:0,238,2678 0/0:58,0:58:99:0,159,1762 0/0:52,0:52:99:0,147,1636 0/0:60,0:60:99:0,171,1875 0/0:95,1:97:99:0,210,2717 0/0:59,0:59:99:0,156,1734 0/0:56,0:56:99:0,156,1736 0/0:49,0:50:99:0,138,1489 0/0:62,0:62:99:0,171,1946 0/0:51,0:51:99:0,141,1576 17 48629458 . A G 20569.60 . AC=60;AF=0.714;AN=84;BaseQRankSum=3.744;DP=953;Dels=0.00;FS=2.510;HRun=1;HaplotypeScore=0.6930;InbreedingCoeff=0.1830;MQ=58.68;MQ0=0;MQRankSum=1.748;QD=24.55;ReadPosRankSum=-1.932 GT:AD:DP:GQ:PL 1/1:0,16:16:42.10:489,42,0 1/1:0,14:14:36.12:458,36,0 1/1:0,13:13:36.09:423,36,0 1/1:0,52:52:99:1725,135,0 1/1:0,35:35:93.26:1182,93,0 1/1:0,19:19:54.17:678,54,0 1/1:0,20:21:57.18:741,57,0 1/1:0,15:15:45.13:585,45,0 1/1:0,22:22:66.18:772,66,0 0/1:12,4:16:97.14:97,0,375 1/1:0,18:18:51.15:623,51,0 1/1:1,8:9:24.07:295,24,0 1/1:0,13:13:39.11:473,39,0 1/1:0,18:18:48.14:585,48,0 0/1:32,28:60:99:761,0,967 1/1:0,16:16:48.15:605,48,0 0/1:17,6:23:99:121,0,529 0/1:6,6:12:99:188,0,155 0/0:33,0:33:96.27:0,96,1170 0/1:21,21:42:99:641,0,600 0/1:16,16:32:99:485,0,408 0/1:15,16:31:99:428,0,463 1/1:0,46:46:99:1559,120,0 0/0:23,0:23:63.19:0,63,801 0/1:12,9:21:99:284,0,348 0/1:13,13:26:99:398,0,392 1/1:0,10:10:24.06:282,24,0 1/1:0,14:14:39.12:478,39,0 1/1:0,15:15:39.11:468,39,0 0/0:17,0:17:48.14:0,48,583 0/1:12,7:19:99:196,0,392 1/1:0,33:33:84.23:1048,84,0 0/1:12,10:22:99:234,0,377 1/1:0,14:15:39.11:462,39,0 1/1:0,23:23:69.18:824,69,0 1/1:0,19:19:54.14:647,54,0 0/1:17,10:27:99:293,0,453 1/1:0,22:22:60.17:719,60,0 0/1:12,7:19:99:203,0,348 0/0:21,0:21:57.17:0,57,703 0/1:6,4:10:99:123,0,197 0/0:21,0:21:57.15:0,57,678 17 48701800 . C T 847.65 . AC=7;AF=0.083;AN=84;BaseQRankSum=-5.428;DP=419;Dels=0.00;FS=0.652;HRun=1;HaplotypeScore=0.2447;InbreedingCoeff=-0.1116;MQ=58.52;MQ0=0;MQRankSum=1.564;QD=14.37;ReadPosRankSum=0.089 GT:AD:DP:GQ:PL 0/0:7,0:7:18.06:0,18,227 0/1:3,11:14:82.48:293,0,82 0/1:3,2:5:57.21:57,0,96 0/1:6,6:12:99:160,0,169 0/0:17,0:17:48.14:0,48,615 0/0:3,0:3:9.03:0,9,113 0/0:2,0:2:6.02:0,6,75 0/0:10,0:10:24.08:0,24,330 0/0:5,0:5:15.05:0,15,192 0/0:13,0:13:36.07:0,36,439 0/0:5,0:5:15.02:0,15,165 0/0:7,0:7:21.05:0,21,242 0/0:9,0:9:27.08:0,27,336 0/1:3,3:6:92.79:93,0,97 0/0:40,0:40:87.27:0,87,1138 0/0:3,0:3:9.03:0,9,117 0/0:5,0:5:15.05:0,15,188 0/0:11,0:11:27.09:0,27,347 0/0:20,0:20:60.19:0,60,757 0/0:30,0:30:75.23:0,75,975 0/0:20,0:20:48.16:0,48,630 0/0:8,0:8:21.06:0,21,259 0/1:6,8:14:99:197,0,203 0/0:2,0:2:3.01:0,3,38 0/1:1,2:3:32.73:67,0,33 0/0:6,0:6:15.05:0,15,211 0/0:7,0:7:21.07:0,21,260 0/0:7,0:7:18.06:0,18,237 0/0:2,0:2:6.02:0,6,77 0/0:4,0:4:9.03:0,9,117 0/0:7,0:7:21.07:0,21,270 0/0:22,0:22:57.17:0,57,725 0/0:15,0:15:39.12:0,39,490 0/0:11,0:11:30.09:0,30,382 0/0:5,0:5:15.05:0,15,194 0/0:4,0:4:12.04:0,12,145 0/0:17,0:17:39.13:0,39,513 0/0:16,0:16:36.12:0,36,477 0/0:4,0:4:12.04:0,12,144 0/0:8,0:8:21.06:0,21,245 0/1:2,3:5:57.19:93,0,57 0/0:8,0:8:15.05:0,15,200 17 49353346 . A G 796.40 . 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T C 11.14 . AC=1;AF=0.012;AN=84;BaseQRankSum=-22.611;DP=4225;DS;Dels=0.00;FS=242.848;HRun=2;HaplotypeScore=2.6047;InbreedingCoeff=-0.0269;MQ=59.17;MQ0=1;MQRankSum=-2.384;QD=0.10;ReadPosRankSum=-10.684 GT:AD:DP:GQ:PL 0/0:66,9:75:99:0,165,1931 0/0:62,13:75:99:0,144,1721 0/0:57,11:68:67.32:0,67,1467 0/0:137,41:178:99:0,255,3903 0/0:153,35:189:99:0,286,3807 0/0:113,23:137:99:0,231,3306 0/0:122,19:143:99:0,222,3011 0/0:113,15:129:99:0,233,3047 0/0:65,12:77:99:0,126,1853 0/0:60,8:68:99:0,111,1522 0/0:56,17:73:0.19:14,0,1265 0/0:47,15:63:19.79:0,20,1353 0/0:55,13:68:99:0,138,1607 0/0:46,14:60:40.45:0,40,1290 0/0:182,48:232:99:0,232,4870 0/0:45,10:57:99:0,120,1358 0/0:64,15:79:99:0,152,2046 0/0:54,11:65:47.91:0,48,1467 0/0:96,39:137:51.48:0,51,2209 0/0:119,10:131:99:0,304,3447 0/1:70,41:111:55.06:55,0,1868 0/0:78,11:90:99:0,136,1945 0/0:202,41:244:99:0,469,5537 0/0:119,13:135:99:0,259,3345 0/0:119,19:138:99:0,283,3380 0/0:109,13:122:99:0,280,3258 0/0:48,15:63:98.70:0,99,1433 0/0:65,7:72:99:0,165,1936 0/0:47,11:59:78.91:0,79,1339 0/0:60,10:70:99:0,126,1706 0/0:52,15:67:52.25:0,52,1354 0/0:129,9:138:99:0,313,3677 0/0:89,15:104:99:0,220,2552 0/0:72,15:87:99:0,129,2001 0/0:71,14:86:99:0,113,1878 0/0:67,10:78:99:0,103,1922 0/0:78,28:106:5.21:0,5,2013 0/0:59,7:66:99:0,150,1777 0/0:61,14:75:99:0,119,1570 0/0:54,14:68:61.10:0,61,1303 0/0:61,9:70:93.33:0,93,1701 0/0:62,10:72:99:0,159,1784 17 53027444 . G A 1198.79 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.489;DP=3276;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.8464;InbreedingCoeff=-0.0120;MQ=59.52;MQ0=0;MQRankSum=2.171;QD=10.16;ReadPosRankSum=-0.226 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,150,1838 0/0:56,0:56:99:0,147,1779 0/0:45,0:45:99:0,123,1497 0/0:189,0:189:99:0,442,5864 0/0:164,0:164:99:0,406,5383 0/0:161,0:161:99:0,391,5164 0/0:144,0:144:99:0,370,4824 0/1:72,46:118:99:1245,0,2072 0/0:50,0:50:99:0,126,1548 0/0:49,0:49:99:0,126,1542 0/0:57,0:57:99:0,144,1779 0/0:65,0:65:99:0,156,1985 0/0:57,0:57:99:0,144,1754 0/0:54,0:54:99:0,138,1733 0/0:208,0:208:99:0,496,6168 0/0:45,0:45:99:0,114,1388 0/0:53,0:53:99:0,132,1636 0/0:47,0:47:99:0,126,1538 0/0:47,0:47:99:0,123,1471 0/0:50,0:50:99:0,126,1582 0/0:64,0:64:99:0,159,1958 0/0:36,0:36:93.28:0,93,1145 0/0:199,0:199:99:0,470,6320 0/0:154,0:154:99:0,373,4975 0/0:174,0:174:99:0,412,5500 0/0:139,0:139:99:0,334,4448 0/0:28,0:28:78.23:0,78,949 0/0:72,0:72:99:0,178,2194 0/0:49,0:49:99:0,135,1609 0/0:55,0:55:99:0,132,1662 0/0:45,0:45:99:0,117,1429 0/0:38,0:38:96.28:0,96,1192 0/0:32,0:32:81.23:0,81,998 0/0:48,0:48:99:0,135,1581 0/0:45,0:45:99:0,120,1477 0/0:55,0:55:99:0,135,1664 0/0:53,0:54:99:0,135,1645 0/0:55,0:55:99:0,147,1747 0/0:50,0:50:99:0,135,1630 0/0:59,0:59:99:0,165,1983 0/0:62,0:62:99:0,165,1995 0/0:50,0:50:99:0,129,1582 17 53042208 . A G 753.79 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.152;DP=3125;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.1906;InbreedingCoeff=-0.0120;MQ=59.34;MQ0=0;MQRankSum=0.689;QD=12.56;ReadPosRankSum=0.334 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,156,1978 0/0:55,1:56:99:0,150,1909 0/0:53,0:53:99:0,150,1877 0/0:168,0:168:99:0,436,5684 0/0:136,0:136:99:0,358,4714 0/0:136,0:136:99:0,346,4610 0/0:112,0:112:99:0,304,4001 0/0:100,0:100:99:0,268,3515 0/0:58,0:58:99:0,156,1959 0/0:45,0:45:99:0,126,1599 0/0:67,0:67:99:0,184,2331 0/0:60,0:60:99:0,166,2117 0/0:41,0:41:99:0,114,1450 0/0:59,0:59:99:0,159,2022 0/0:176,0:176:99:0,451,5747 0/0:46,0:46:99:0,129,1625 0/0:72,0:72:99:0,196,2471 0/0:58,0:58:99:0,156,1981 0/0:73,0:73:99:0,178,2296 0/0:66,0:66:99:0,175,2200 0/0:83,0:83:99:0,214,2724 0/0:41,0:41:99:0,111,1417 0/0:148,0:148:99:0,385,5095 0/0:113,0:113:99:0,289,3844 0/0:111,0:111:99:0,274,3631 0/0:109,0:109:99:0,289,3790 0/0:44,0:44:99:0,117,1500 0/0:59,0:59:99:0,156,1991 0/0:40,0:40:99:0,108,1362 0/0:70,0:70:99:0,184,2350 0/0:50,0:50:99:0,138,1754 0/0:63,0:63:99:0,169,2144 0/0:50,0:50:99:0,132,1684 0/0:46,0:46:99:0,129,1632 0/0:52,0:52:99:0,147,1855 0/0:72,0:72:99:0,196,2492 0/0:70,0:70:99:0,190,2388 0/0:71,0:71:99:0,187,2381 0/0:35,0:35:96.31:0,96,1226 0/0:54,0:54:99:0,147,1870 0/0:45,0:45:99:0,123,1557 0/1:33,27:60:99:800,0,960 17 53828493 . A C 26.02 . AC=1;AF=0.017;AN=60;BaseQRankSum=-2.395;DP=66;Dels=0.00;FS=2.372;HRun=0;HaplotypeScore=0.0277;InbreedingCoeff=-0.1448;MQ=59.37;MQ0=0;MQRankSum=0.131;QD=6.51;ReadPosRankSum=-0.755 GT:AD:DP:GQ:PL 0/0:1,1:2:3.01:0,3,34 0/0:1,1:2:3.01:0,3,38 ./. 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,33 ./. 0/0:1,0:1:3.01:0,3,39 ./. ./. 0/0:2,0:2:3.01:0,3,39 0/0:1,0:1:3.01:0,3,32 ./. 0/0:2,0:2:6.02:0,6,74 0/0:4,0:4:12.04:0,12,141 0/0:3,0:3:6.02:0,6,73 ./. 0/0:2,0:2:6.02:0,6,76 0/0:3,0:3:9.03:0,9,111 0/0:2,0:2:6.02:0,6,67 0/0:4,0:4:12.04:0,12,149 0/0:2,0:2:6.02:0,6,69 0/0:2,0:2:6.02:0,6,72 ./. ./. ./. 0/0:2,0:2:6.02:0,6,67 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,37 ./. 0/0:2,0:2:3.01:0,3,37 0/0:2,0:2:6.02:0,6,76 0/0:5,0:5:15.05:0,15,182 ./. 0/0:3,0:3:9.03:0,9,108 ./. 0/0:2,0:2:6.02:0,6,70 0/0:2,0:2:6.02:0,6,67 0/0:2,0:2:6.02:0,6,77 0/0:1,0:1:3.01:0,3,38 0/1:1,3:4:28.77:69,0,29 0/0:4,0:4:12.04:0,12,149 17 54450038 . C A 133335.82 . AC=60;AF=0.714;AN=84;BaseQRankSum=-47.944;DP=6130;DS;Dels=0.00;FS=2.397;HRun=2;HaplotypeScore=2.2670;InbreedingCoeff=-0.1667;MQ=59.50;MQ0=0;MQRankSum=-0.581;QD=22.71;ReadPosRankSum=0.063 GT:AD:DP:GQ:PL 0/1:62,70:132:99:2029,0,1839 1/1:0,133:133:99:4405,364,0 1/1:0,110:110:99:3752,316,0 1/1:0,166:166:99:5322,439,0 1/1:0,170:170:99:5570,457,0 0/1:88,65:153:99:1779,0,2954 0/1:89,68:157:99:1864,0,2750 0/1:93,65:158:99:1791,0,2747 0/1:90,50:140:99:1261,0,2789 0/1:56,64:120:99:1784,0,1708 0/1:59,64:123:99:1704,0,1721 1/1:0,95:95:99:3100,259,0 1/1:0,91:91:99:3038,253,0 1/1:0,122:122:99:4012,331,0 0/1:124,126:250:99:3439,0,3606 0/1:73,51:124:99:1401,0,2294 1/1:1,137:138:99:4475,341,0 1/1:0,120:120:99:4025,334,0 1/1:0,224:224:99:7503,626,0 1/1:0,233:233:99:7698,635,0 1/1:0,223:223:99:7293,608,0 0/1:73,62:135:99:1753,0,2121 1/1:0,200:200:99:6561,542,0 0/1:67,50:117:99:1395,0,2051 0/1:93,67:160:99:1835,0,3034 0/1:83,59:142:99:1583,0,2655 0/1:45,56:101:99:1567,0,1279 0/0:127,0:127:99:0,358,4524 1/1:0,130:130:99:4149,349,0 1/1:1,112:113:99:3632,271,0 0/1:56,49:105:99:1352,0,1642 0/1:109,122:231:99:3354,0,3183 1/1:2,154:156:99:4860,340,0 0/1:62,66:128:99:1813,0,1911 0/1:78,57:135:99:1582,0,2414 1/1:0,134:134:99:4564,385,0 0/1:115,91:206:99:2333,0,3508 0/0:132,0:132:99:0,370,4690 0/1:65,61:126:99:1700,0,1893 1/1:0,117:117:99:4019,340,0 1/1:6,115:121:99:3634,167,0 1/1:0,131:131:99:4406,367,0 17 54450134 . G A 181196.39 . 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A G 1660.06 . 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C T 18865.47 . 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C G 21932.42 . 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TTGC T 473.95 . 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C T 9974.95 . 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C T 28.70 . 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A C 1570.13 . 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A AC 57.76 . 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G A 46.67 . AC=1;AF=0.016;AN=64;BaseQRankSum=-1.654;DP=83;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0812;InbreedingCoeff=0.1220;MQ=58.02;MQ0=0;MQRankSum=0.269;QD=15.56;ReadPosRankSum=-0.398 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,29 0/0:2,0:2:6.02:0,6,76 0/0:2,0:2:6.02:0,6,75 0/0:2,0:2:6.02:0,6,75 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,36 ./. ./. 0/0:2,0:2:6.02:0,6,65 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,72 0/0:3,0:3:9.03:0,9,111 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:6:0,6,62 0/0:9,0:9:18.06:0,18,228 0/0:7,0:7:15.05:0,15,197 0/0:5,0:5:15.05:0,15,186 0/0:3,0:3:9.03:0,9,117 ./. 0/0:3,0:3:9.03:0,9,104 0/0:3,0:3:9.03:0,9,111 0/1:0,3:3:0.51:99,9,0 ./. 0/0:1,0:1:3.01:0,3,34 ./. ./. ./. ./. 0/0:3,0:3:6.02:0,6,68 ./. 0/0:3,0:3:9.03:0,9,109 0/0:4,0:4:12.04:0,12,149 0/0:2,0:2:6.02:0,6,77 ./. 0/0:3,0:3:9.02:0,9,99 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.03:0,9,116 0/0:1,0:1:3.01:0,3,35 0/0:2,0:2:6.02:0,6,71 0/0:2,0:2:6.02:0,6,71 0/0:3,0:3:9.02:0,9,103 0/0:2,0:2:6.02:0,6,67 17 56326521 . G C 3415.11 . 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C T 1564.40 . 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G A 18510.98 . 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G C 565.11 . 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T C 857.27 . 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G A 1439.20 . 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C T 2481.69 . 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A G 3519.12 . 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T C 1595.61 . 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G A 4018.57 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.272;DP=2684;DS;Dels=0.00;FS=41.155;HRun=0;HaplotypeScore=3.0595;InbreedingCoeff=-0.0370;MQ=58.79;MQ0=0;MQRankSum=0.851;QD=15.34;ReadPosRankSum=-1.011 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,153,1870 0/0:45,0:45:99:0,114,1366 0/0:48,0:49:99:0,132,1623 0/0:131,0:131:99:0,349,4566 0/0:105,0:105:99:0,283,3742 0/0:79,0:79:99:0,217,2758 0/0:68,0:68:99:0,175,2254 0/0:91,0:92:99:0,244,3124 0/0:59,0:59:99:0,144,1760 0/0:40,0:40:99:0,105,1244 0/0:50,1:51:99:0,108,1643 0/0:42,0:42:99:0,120,1419 0/0:42,0:43:99:0,111,1387 0/0:56,0:56:99:0,159,1926 0/0:151,0:152:99:0,403,4884 0/0:48,0:48:99:0,120,1488 0/0:53,0:53:99:0,141,1728 0/0:47,0:48:99:0,126,1511 0/0:74,0:75:99:0,196,2372 0/0:81,0:81:99:0,211,2551 0/0:85,0:85:99:0,232,2886 0/0:50,0:50:99:0,117,1468 0/1:54,61:116:99:1773,0,1602 0/0:55,0:55:99:0,135,1778 0/0:89,0:90:99:0,217,2820 0/0:67,0:67:99:0,175,2250 0/0:38,1:39:65.34:0,65,1196 0/0:50,0:50:99:0,120,1464 0/0:45,0:45:99:0,114,1395 0/0:45,0:45:99:0,126,1586 0/0:43,0:44:99:0,117,1450 0/0:80,0:81:99:0,208,2569 0/0:50,0:51:99:0,132,1612 0/0:45,0:45:99:0,114,1394 0/0:56,0:56:99:0,138,1679 0/0:53,0:53:99:0,132,1639 0/1:39,43:83:99:1207,0,1032 0/0:49,0:49:99:0,129,1573 0/1:28,34:63:99:1039,0,857 0/0:53,0:54:99:0,144,1709 0/0:43,0:43:99:0,111,1366 0/0:43,0:43:99:0,120,1473 17 56395757 . C T 1312.03 . 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T C 666.55 . 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T C 321.14 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.063;DP=390;Dels=0.00;FS=6.231;HRun=1;HaplotypeScore=0.3594;InbreedingCoeff=-0.0465;MQ=58.68;MQ0=0;MQRankSum=-0.686;QD=11.89;ReadPosRankSum=0.086 GT:AD:DP:GQ:PL 0/0:8,0:8:21.06:0,21,256 0/0:7,0:7:18.06:0,18,230 0/0:8,0:8:24.07:0,24,292 0/0:18,0:18:48.15:0,48,606 0/0:8,0:8:21.07:0,21,268 0/0:11,0:11:30.10:0,30,390 0/0:8,0:8:21.04:0,21,263 0/0:20,0:20:42.13:0,42,561 0/0:9,0:9:27.08:0,27,334 0/0:7,0:7:15.05:0,15,202 0/0:6,0:6:15.05:0,15,192 0/0:10,0:10:27.09:0,27,346 0/0:6,0:6:18.06:0,18,223 0/0:5,0:5:15.04:0,15,176 0/0:26,0:27:72.22:0,72,890 0/0:13,0:13:39.09:0,39,462 0/0:11,0:11:33.10:0,33,399 0/0:10,0:10:30.09:0,30,366 0/0:7,0:7:21.06:0,21,253 0/0:17,0:17:42.12:0,42,500 0/0:14,0:14:36.11:0,36,439 0/0:11,0:11:27.08:0,27,339 0/1:6,9:15:99:274,0,123 0/0:4,0:4:12.04:0,12,149 0/0:4,0:4:12.03:0,12,142 0/0:15,0:15:33.10:0,33,435 0/0:6,0:6:15.04:0,15,189 0/0:9,0:9:24.07:0,24,294 0/0:4,0:4:12.04:0,12,149 0/0:8,0:8:24.07:0,24,294 0/0:12,0:12:33.10:0,33,413 0/0:8,0:8:18.06:0,18,236 0/0:7,0:7:18.06:0,18,226 0/0:9,0:9:21.07:0,21,275 0/0:4,0:4:12.04:0,12,150 0/0:3,0:3:6.02:0,6,83 0/1:4,4:8:91.85:92,0,93 0/0:8,0:8:18.06:0,18,239 0/1:3,1:4:30.29:30,0,64 0/0:7,0:7:21.06:0,21,256 0/0:5,0:5:15.05:0,15,185 0/0:9,0:9:27.08:0,27,325 17 56440642 . C T 1373 . 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T C 31225.87 . 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G C 24084.75 . 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C T 558.54 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.791;DP=2786;Dels=0.00;FS=0.892;HRun=1;HaplotypeScore=0.8600;InbreedingCoeff=-0.0120;MQ=59.35;MQ0=0;MQRankSum=0.699;QD=9.97;ReadPosRankSum=-1.069 GT:AD:DP:GQ:PL 0/0:34,0:34:96.29:0,96,1212 0/0:46,0:46:99:0,129,1662 0/0:49,0:49:99:0,135,1757 0/0:139,0:139:99:0,358,4862 0/0:107,0:107:99:0,289,3895 0/0:117,0:117:99:0,310,4275 0/0:88,0:88:99:0,235,3211 0/0:91,0:91:99:0,241,3303 0/0:62,0:62:99:0,163,2097 0/0:44,0:44:99:0,126,1595 0/0:52,0:52:99:0,153,1960 0/0:58,0:58:99:0,156,1980 0/0:25,0:25:69.22:0,69,889 0/0:45,0:45:99:0,108,1424 0/0:199,0:200:99:0,470,6191 0/0:43,0:43:99:0,117,1518 0/0:41,0:41:99:0,111,1437 0/0:45,0:45:99:0,120,1508 0/0:78,0:79:99:0,205,2586 0/0:69,0:70:99:0,193,2479 0/0:76,0:77:99:0,202,2572 0/0:48,0:48:99:0,135,1719 0/0:138,0:138:99:0,343,4762 0/0:107,0:107:99:0,286,3902 0/0:112,0:112:99:0,286,3959 0/0:89,0:90:99:0,232,3162 0/0:27,0:27:81.26:0,81,1037 0/0:55,0:55:99:0,156,1987 0/0:26,0:26:75.24:0,75,963 0/0:49,0:49:99:0,138,1776 0/0:37,1:38:81.66:0,82,1336 0/1:34,22:56:99:605,0,961 0/0:65,0:65:99:0,184,2339 0/0:44,0:44:99:0,120,1553 0/0:53,0:53:99:0,138,1787 0/0:46,0:46:99:0,129,1646 0/0:75,0:75:99:0,202,2543 0/0:45,0:45:99:0,123,1576 0/0:31,0:31:84.27:0,84,1065 0/0:56,0:56:99:0,147,1918 0/0:55,0:55:99:0,159,1988 0/0:58,0:58:99:0,160,2066 17 56682426 . C T 582.81 . 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T G 825.42 . AC=17;AF=0.202;AN=84;BaseQRankSum=-41.413;DP=6191;DS;Dels=0.00;FS=1549.339;HRun=2;HaplotypeScore=3.7971;InbreedingCoeff=-0.2710;MQ=59.18;MQ0=0;MQRankSum=2.466;QD=0.34;ReadPosRankSum=-5.917 GT:AD:DP:GQ:PL 0/1:46,77:123:4.74:5,0,1370 0/0:58,63:121:24.64:0,25,1511 0/0:45,58:104:10.97:0,11,1255 0/1:101,147:248:20.72:21,0,2779 0/1:98,141:239:40.51:41,0,2652 0/0:107,136:243:71.59:0,72,3193 0/0:91,156:247:93.14:0,93,2668 0/0:108,133:241:70.60:0,71,2953 0/1:50,70:120:26.31:26,0,1312 0/1:41,71:113:72.41:72,0,1109 0/1:47,69:116:20.74:21,0,1245 0/0:54,68:122:21.30:0,21,1537 0/1:56,59:115:20.19:20,0,1573 0/0:59,83:143:16.22:0,16,1651 0/1:93,142:236:99:198,0,2643 0/0:26,51:77:15.05:0,15,740 0/0:59,60:119:19.83:0,20,1821 0/1:49,60:109:65.31:65,0,1213 0/1:59,68:127:9.18:9,0,1624 0/0:81,73:154:99:0,131,2350 0/1:56,85:142:46.17:46,0,1705 0/0:45,54:99:25.11:0,25,1331 0/1:92,145:237:99:119,0,2537 0/0:96,142:238:13.90:0,14,2813 0/0:106,136:244:70.52:0,71,2974 0/0:104,135:240:99:0,148,3104 0/1:37,56:94:53.94:54,0,963 0/0:53,75:128:27.29:0,27,1598 0/0:38,54:92:57.49:0,57,1154 0/0:48,60:108:11.26:0,11,1321 0/1:33,66:99:70.15:70,0,950 0/0:77,70:147:99:0,152,2079 0/0:57,59:116:11.04:0,11,1551 0/0:61,71:132:41.03:0,41,1796 0/1:48,61:109:68.13:68,0,1396 0/0:58,79:137:3.83:0,4,1688 0/1:40,55:95:64.91:65,0,1014 0/0:51,73:124:1.74:3,0,1430 0/1:49,69:118:81.14:81,0,1331 0/0:52,67:119:49.37:0,49,1384 0/0:55,63:118:77.06:0,77,1706 0/0:60,78:138:41.26:0,41,1710 17 57128625 . A G 173.45 . 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T G 41.04 . AC=7;AF=0.083;AN=84;BaseQRankSum=-1.477;DP=313;Dels=0.01;FS=5.578;HRun=2;HaplotypeScore=2.3848;InbreedingCoeff=-0.1317;MQ=49.95;MQ0=4;MQRankSum=3.326;QD=0.84;ReadPosRankSum=-3.075 GT:AD:DP:GQ:PL 0/0:3,0:3:6.02:0,6,65 0/0:3,0:3:6.01:0,6,58 0/0:6,0:6:9.02:0,9,99 0/0:4,2:6:3.01:0,3,45 0/0:11,1:12:27.06:0,27,292 0/0:8,0:10:15.02:0,15,160 0/0:6,0:6:15.04:0,15,174 0/0:6,0:6:12.02:0,12,127 0/0:5,1:7:9.02:0,9,100 0/0:6,1:7:15.03:0,15,155 0/1:5,1:6:27.11:27,0,55 0/0:6,1:7:11.49:0,11,126 0/0:6,0:6:12.03:0,12,129 0/0:6,0:6:12.03:0,12,136 0/0:22,3:26:20.50:0,20,466 0/0:3,1:4:6.02:0,6,69 0/0:8,0:8:21.06:0,21,241 0/0:7,0:8:18.05:0,18,198 0/0:8,0:8:18.05:0,18,200 0/1:4,1:5:26.23:26,0,55 0/0:8,0:8:15.03:0,15,166 0/0:4,0:4:6.02:0,6,66 0/0:5,1:7:6:0,6,52 0/0:9,1:10:18.03:0,18,193 0/0:7,1:8:12.02:0,12,126 0/0:5,1:6:9.02:0,9,100 0/0:4,0:6:9.01:0,9,91 0/1:6,1:7:21.10:21,0,119 0/0:7,0:8:18.05:0,18,207 0/0:11,1:12:24.07:0,24,279 0/0:5,0:5:12.02:0,12,124 0/0:7,1:9:18.05:0,18,211 0/0:3,0:3:6.01:0,6,61 0/1:5,1:7:23.22:23,0,82 0/1:10,1:11:9.55:10,0,170 0/0:8,0:8:18.03:0,18,190 0/0:8,1:9:24.06:0,24,266 0/1:6,1:7:25.76:26,0,93 0/0:4,1:5:9.02:0,9,99 0/0:6,0:6:15.03:0,15,153 0/0:4,2:7:6.02:0,6,69 0/1:4,2:6:15.65:16,0,79 17 57663596 . TA T 301.29 . AC=36;AF=0.439;AN=82;BaseQRankSum=3.245;DP=296;FS=4.685;HRun=18;HaplotypeScore=16.1319;InbreedingCoeff=-0.0382;MQ=50.07;MQ0=4;MQRankSum=-0.061;QD=1.48;ReadPosRankSum=1.244 GT:AD:DP:GQ:PL ./.:.:1:.:0,0,0 1/1:1,1:2:2.84:14,3,0 0/0:6,0:5:8.81:0,9,59 0/0:6,0:5:8.92:0,9,64 0/1:9,2:11:12.02:25,0,12 0/0:6,1:9:1.94:0,2,70 0/0:4,0:4:0:0,0,0 0/1:4,1:5:9.52:10,0,17 0/0:6,1:7:2.36:0,2,70 0/1:6,1:7:10:10,0,90 0/1:5,0:5:9.55:10,0,17 1/1:6,0:6:5.65:31,6,0 0/0:5,0:4:2.99:0,3,23 0/0:5,1:6:2.99:0,3,23 0/1:19,2:18:22.72:39,0,23 0/0:5,0:4:0:0,0,0 0/0:7,0:7:2.98:0,3,22 0/1:6,1:7:0.68:1,0,17 1/1:6,2:7:5.65:31,6,0 0/1:4,0:4:9.52:10,0,17 0/1:6,1:7:6.58:7,0,36 0/1:2,1:3:9.56:10,0,16 0/1:3,2:4:18.85:19,0,33 0/1:7,1:10:6.48:6,0,29 1/1:5,2:7:6.88:27,7,0 0/0:4,1:5:0:0,0,0 0/0:5,0:5:5.97:0,6,44 0/1:5,2:7:11.13:35,0,11 0/0:8,0:8:8.96:0,9,68 1/1:9,1:10:4.59:20,5,0 1/1:3,2:5:5.72:31,6,0 0/0:9,0:9:11.80:0,12,81 1/1:0,1:1:2.88:15,3,0 0/1:6,1:7:13.11:13,0,69 0/1:8,3:11:29.53:31,0,30 0/1:6,1:8:0.67:1,0,18 0/1:8,1:9:3.59:4,0,56 1/1:4,2:6:5.55:31,6,0 1/1:3,1:4:4.90:21,5,0 0/0:6,0:6:8.81:0,9,60 0/1:4,2:5:9.52:10,0,16 0/1:5,0:5:9.53:10,0,17 17 57951973 . G A 26167.42 . AC=10;AF=0.119;AN=84;BaseQRankSum=-38.361;DP=8248;DS;Dels=0.00;FS=4.869;HRun=0;HaplotypeScore=2.6047;InbreedingCoeff=0.0919;MQ=59.65;MQ0=0;MQRankSum=-0.632;QD=15.55;ReadPosRankSum=0.966 GT:AD:DP:GQ:PL 0/0:189,1:190:99:0,494,6654 0/0:187,0:187:99:0,503,6367 0/0:148,2:150:99:0,333,4958 0/0:246,0:246:99:0,701,9325 0/0:249,0:250:99:0,698,9463 0/0:247,2:250:99:0,642,9543 0/0:250,0:250:99:0,728,9840 0/0:247,0:247:99:0,707,9525 0/0:168,1:169:99:0,449,5888 0/0:163,0:163:99:0,424,5362 0/0:187,1:188:99:0,515,6459 0/0:165,0:165:99:0,466,5835 0/0:156,0:156:99:0,412,5205 0/0:161,0:161:99:0,433,5534 0/0:247,0:250:99:0,707,8725 0/0:146,0:146:99:0,400,4992 0/0:175,1:176:99:0,460,6143 0/0:164,0:165:99:0,463,5807 0/1:122,128:250:99:3546,0,3469 0/1:141,109:250:99:2953,0,4174 0/0:249,0:249:99:0,677,8629 0/0:190,0:190:99:0,524,6591 0/0:250,0:250:99:0,716,9674 0/0:250,0:250:99:0,713,9658 0/0:246,0:246:99:0,719,9746 0/0:240,0:240:99:0,695,9271 0/1:51,79:130:99:2190,0,1441 1/1:0,169:169:99:5620,472,0 0/0:149,0:149:99:0,400,5078 0/1:88,86:174:99:2283,0,2642 0/1:68,63:131:99:1693,0,2111 0/1:125,124:250:99:3352,0,3523 0/0:199,0:200:99:0,530,6663 0/0:159,0:159:99:0,454,5668 0/0:166,1:167:99:0,436,5909 0/0:182,0:182:99:0,521,6534 0/0:247,0:247:99:0,656,8304 0/0:172,0:172:99:0,475,5940 0/0:171,0:172:99:0,482,6074 0/1:92,96:188:99:2700,0,2727 0/1:75,66:141:99:1830,0,2298 0/0:182,0:182:99:0,518,6554 17 58137288 . G A 6207.12 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.666;DP=10070;DS;Dels=0.00;FS=9.154;HRun=0;HaplotypeScore=4.5500;InbreedingCoeff=-0.0244;MQ=59.68;MQ0=0;MQRankSum=-0.018;QD=13.86;ReadPosRankSum=-0.679 GT:AD:DP:GQ:PL 0/0:242,0:243:99:0,635,7527 0/0:248,0:248:99:0,662,7883 0/0:246,0:247:99:0,617,7420 0/0:249,0:249:99:0,689,8910 0/0:250,0:250:99:0,719,9304 0/0:227,0:227:99:0,644,8234 0/0:233,0:233:99:0,638,8195 0/0:240,1:241:99:0,623,8131 0/0:232,0:232:99:0,620,7382 0/0:231,0:233:99:0,617,7361 0/0:246,0:246:99:0,656,7768 0/0:235,0:235:99:0,641,7607 0/0:246,0:246:99:0,644,7679 0/0:231,0:231:99:0,638,7572 0/0:247,0:250:99:0,686,7993 0/0:202,0:202:99:0,517,6172 0/0:232,0:232:99:0,611,7190 0/0:242,0:242:99:0,659,7820 0/0:250,0:250:99:0,671,7775 0/0:250,0:250:99:0,701,8251 0/0:250,0:250:99:0,698,8308 0/0:237,0:237:99:0,644,7593 0/0:250,0:250:99:0,704,9094 0/0:224,0:224:99:0,611,7977 0/0:249,1:250:99:0,641,8667 0/0:238,0:238:99:0,632,8039 0/1:104,104:211:99:2871,0,2734 0/1:117,120:237:99:3336,0,3090 0/0:236,1:237:99:0,599,7499 0/0:229,0:229:99:0,635,7427 0/0:243,0:243:99:0,671,7901 0/0:249,0:250:99:0,677,8190 0/0:232,0:232:99:0,617,7385 0/0:247,0:247:99:0,671,7885 0/0:248,0:248:99:0,653,7844 0/0:239,0:239:99:0,638,7505 0/0:250,0:250:99:0,677,7981 0/0:233,2:235:99:0,572,7186 0/0:250,0:250:99:0,671,7873 0/0:245,0:245:99:0,671,7876 0/0:231,0:231:99:0,617,7298 0/0:248,0:249:99:0,674,7925 17 58143660 . G T 135.13 . AC=9;AF=0.107;AN=84;BaseQRankSum=-13.251;DP=2218;DS;Dels=0.00;FS=319.093;HRun=1;HaplotypeScore=1.1686;InbreedingCoeff=-0.1444;MQ=58.36;MQ0=0;MQRankSum=2.566;QD=0.31;ReadPosRankSum=-3.751 GT:AD:DP:GQ:PL 0/1:24,8:32:23.41:23,0,642 0/0:30,9:39:41.53:0,42,784 0/1:35,12:47:11.22:11,0,918 0/1:59,20:79:26.59:27,0,1614 0/1:48,28:76:33.16:33,0,1006 0/0:61,20:81:99:0,105,1467 0/0:55,15:70:51.39:0,51,1364 0/0:56,17:73:81.83:0,82,1405 0/0:30,11:41:30.68:0,31,711 0/0:21,7:28:15.89:0,16,541 0/0:23,15:38:25.82:0,26,659 0/1:36,11:47:15.98:16,0,896 0/0:28,11:39:9.25:0,9,706 0/0:36,9:46:16.84:0,17,915 0/0:94,39:134:99:0,105,2244 0/0:16,4:20:27.08:0,27,329 0/0:30,13:43:42.93:0,43,852 0/0:28,12:40:43.57:0,44,828 0/0:52,12:64:51.61:0,52,1425 0/0:51,22:73:0.20:0,0,1161 0/0:49,12:61:38.08:0,38,1464 0/0:25,13:38:10.77:0,11,607 0/0:77,28:105:17.98:0,18,1877 0/0:54,18:72:21.25:0,21,1340 0/0:51,16:67:99:0,108,1377 0/0:52,17:69:79.07:0,79,1533 0/1:20,6:26:11.07:11,0,477 0/0:31,8:39:75.20:0,75,886 0/1:29,13:42:50.42:50,0,785 0/0:33,8:41:49.88:0,50,942 0/0:29,8:37:69.16:0,69,814 0/0:57,9:66:91.78:0,92,1539 0/0:43,8:51:99:0,107,1234 0/0:28,17:45:25.84:0,26,808 0/1:33,13:46:32.32:32,0,886 0/0:27,8:35:29.71:0,30,677 0/0:43,15:58:33.59:0,34,1086 0/1:27,15:42:52.70:53,0,689 0/0:37,13:50:23.21:0,23,927 0/0:34,10:44:2.86:0,0,877 0/0:35,7:42:55.55:0,56,955 0/0:24,7:31:2.99:0,0,559 17 58153580 . C A 604.56 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.180;DP=1682;Dels=0.00;FS=0.839;HRun=2;HaplotypeScore=0.7093;InbreedingCoeff=-0.0120;MQ=59.39;MQ0=1;MQRankSum=1.583;QD=12.34;ReadPosRankSum=-0.220 GT:AD:DP:GQ:PL 0/0:31,0:31:84.24:0,84,1041 0/0:28,0:28:75.20:0,75,913 0/0:29,0:29:75.24:0,75,973 0/0:47,0:47:99:0,120,1645 0/0:56,0:56:99:0,153,2002 0/0:46,0:46:99:0,132,1757 0/0:43,0:43:99:0,114,1507 0/0:51,0:51:99:0,144,1884 0/0:47,0:47:99:0,129,1614 0/0:45,0:45:99:0,129,1615 0/0:40,0:40:99:0,108,1357 0/0:44,0:44:99:0,129,1605 0/0:34,1:35:63.66:0,64,1097 0/0:34,0:34:93.27:0,93,1161 0/0:108,0:108:99:0,289,3600 0/0:27,0:27:72.22:0,72,908 0/0:29,0:29:87.27:0,87,1065 0/0:33,0:33:90.28:0,90,1134 0/0:46,0:46:99:0,120,1498 0/0:38,2:40:99:0,102,1277 0/0:44,1:45:99:0,117,1502 0/0:28,0:28:78.23:0,78,957 0/1:24,24:48:99:651,0,733 0/0:36,0:36:99:0,102,1366 0/0:36,0:36:99:0,102,1406 0/0:40,0:40:99:0,105,1408 0/0:24,0:24:69.21:0,69,845 0/0:33,0:33:81.24:0,81,1016 0/0:31,0:31:84.26:0,84,1056 0/0:47,0:47:99:0,138,1739 0/0:31,0:31:84.24:0,84,1028 0/0:52,0:52:99:0,129,1639 0/0:28,0:28:75.24:0,75,957 0/0:31,0:31:87.27:0,87,1091 0/0:42,0:42:99:0,114,1398 0/0:49,0:49:99:0,138,1747 0/0:48,0:48:99:0,129,1623 0/0:52,0:52:99:0,138,1733 0/0:33,0:33:96.30:0,96,1193 0/0:28,0:28:75.23:0,75,937 0/0:29,0:29:75.23:0,75,948 0/0:31,0:31:90.29:0,90,1137 17 58342829 . G A 724.13 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.441;DP=2420;Dels=0.00;FS=3.396;HRun=0;HaplotypeScore=0.5532;InbreedingCoeff=-0.0244;MQ=59.41;MQ0=0;MQRankSum=0.493;QD=9.28;ReadPosRankSum=-2.613 GT:AD:DP:GQ:PL 0/1:15,16:31:99:423,0,476 0/1:30,17:47:99:363,0,825 0/0:45,0:45:99:0,123,1554 0/0:80,0:80:99:0,208,2773 0/0:62,0:62:99:0,166,2255 0/0:69,0:69:99:0,160,2206 0/0:58,0:58:99:0,154,2090 0/0:51,0:51:99:0,135,1852 0/0:53,0:53:99:0,138,1765 0/0:62,0:62:99:0,156,1981 0/0:60,0:60:99:0,150,1929 0/0:63,0:63:99:0,169,2120 0/0:58,0:58:99:0,150,1926 0/0:39,0:39:99:0,114,1396 0/0:178,0:179:99:0,436,5679 0/0:40,0:40:99:0,105,1318 0/0:42,0:42:99:0,108,1389 0/0:54,0:54:99:0,153,1895 0/0:71,1:72:99:0,147,2208 0/0:76,0:77:99:0,196,2486 0/0:77,0:77:99:0,184,2351 0/0:49,0:49:99:0,132,1665 0/0:85,0:85:99:0,220,3003 0/0:66,0:66:99:0,172,2349 0/0:74,0:74:99:0,199,2720 0/0:49,0:49:99:0,126,1705 0/0:26,0:26:69.22:0,69,881 0/0:50,0:50:99:0,135,1717 0/0:60,0:60:99:0,166,2073 0/0:38,0:38:99:0,105,1311 0/0:39,0:39:99:0,114,1405 0/0:60,0:60:99:0,144,1904 0/0:45,0:45:99:0,117,1493 0/0:50,0:50:99:0,135,1684 0/0:48,0:48:99:0,141,1711 0/0:72,0:72:99:0,193,2439 0/0:54,0:54:99:0,138,1780 0/0:44,0:44:99:0,120,1506 0/0:45,0:45:99:0,129,1611 0/0:57,0:57:99:0,159,1973 0/0:39,0:39:99:0,111,1369 0/0:51,0:51:99:0,141,1784 17 58508582 . G A 286.59 . 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T C 4608.67 . AC=10;AF=0.119;AN=84;BaseQRankSum=-7.360;DP=1436;Dels=0.00;FS=1.312;HRun=1;HaplotypeScore=0.6610;InbreedingCoeff=-0.1351;MQ=59.17;MQ0=0;MQRankSum=-0.118;QD=13.24;ReadPosRankSum=0.856 GT:AD:DP:GQ:PL 0/0:35,0:35:93.29:0,93,1178 0/0:29,0:30:84.27:0,84,1063 0/0:26,0:26:69.21:0,69,859 0/0:26,0:26:66.21:0,66,851 0/0:12,0:12:36.12:0,36,459 0/1:7,10:17:99:263,0,210 0/1:7,7:14:99:182,0,193 0/1:7,10:17:99:246,0,217 0/0:35,0:35:87.26:0,87,1071 0/0:29,0:29:84.26:0,84,1032 0/0:39,0:39:99:0,105,1306 0/0:40,0:40:99:0,99,1273 0/0:24,0:24:69.21:0,69,851 0/0:32,0:32:84.27:0,84,1071 0/0:138,0:139:99:0,349,4379 0/0:21,0:21:51.16:0,51,659 0/0:30,0:30:78.25:0,78,988 0/0:39,0:39:99:0,105,1303 0/1:29,31:60:99:731,0,797 0/1:27,38:65:99:994,0,705 0/0:56,0:56:99:0,135,1718 0/0:29,0:29:78.22:0,78,967 0/0:21,0:21:57.18:0,57,717 0/0:16,0:16:42.14:0,42,547 0/0:12,0:12:36.11:0,36,453 0/0:14,0:14:36.12:0,36,467 0/1:20,13:33:99:270,0,540 0/1:20,14:34:99:357,0,646 0/0:29,0:29:87.27:0,87,1066 0/1:11,14:25:99:391,0,317 0/1:14,14:28:99:385,0,411 0/1:21,34:55:99:790,0,555 0/0:30,0:30:84.25:0,84,1037 0/0:26,0:26:72.21:0,72,889 0/0:31,0:31:81.25:0,81,1025 0/0:46,0:46:99:0,126,1600 0/0:47,0:47:99:0,126,1571 0/0:42,0:42:99:0,108,1370 0/0:25,0:25:66.21:0,66,836 0/0:36,0:36:93.29:0,93,1173 0/0:26,1:27:39.73:0,40,845 0/0:44,0:44:99:0,123,1540 17 58525018 . C T 3381.85 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.549;DP=7788;DS;Dels=0.00;FS=3.946;HRun=1;HaplotypeScore=4.2152;InbreedingCoeff=-0.0120;MQ=59.59;MQ0=0;MQRankSum=0.710;QD=13.53;ReadPosRankSum=2.219 GT:AD:DP:GQ:PL 0/0:137,0:137:99:0,367,4646 0/0:157,0:157:99:0,403,5046 0/0:138,0:138:99:0,376,4708 0/0:247,0:247:99:0,680,9046 0/0:250,0:250:99:0,680,9074 0/0:249,0:250:99:0,686,8904 0/0:250,0:250:99:0,650,8601 0/1:130,120:250:99:3382,0,4082 0/0:176,0:178:99:0,463,5889 0/0:130,0:130:99:0,325,4128 0/0:142,0:142:99:0,370,4692 0/0:174,0:174:99:0,469,5867 0/0:110,0:110:99:0,280,3504 0/0:132,0:132:99:0,361,4569 0/0:249,0:250:99:0,665,8208 0/0:118,0:118:99:0,331,4160 0/0:144,0:144:99:0,388,4859 0/0:147,0:147:99:0,403,5049 0/0:244,1:247:99:0,605,7562 0/0:243,0:244:99:0,644,8060 0/0:248,0:250:99:0,626,7843 0/0:213,0:214:99:0,554,6940 0/0:250,0:250:99:0,692,9211 0/0:250,0:250:99:0,626,8247 0/0:247,0:247:99:0,653,8631 0/0:248,1:250:99:0,602,8415 0/0:137,0:137:99:0,367,4627 0/0:158,0:158:99:0,403,5076 0/0:116,0:118:99:0,301,3840 0/0:128,0:128:99:0,343,4307 0/0:132,0:132:99:0,361,4616 0/0:249,0:250:99:0,620,7948 0/0:244,0:244:99:0,629,7923 0/0:156,0:157:99:0,421,5304 0/0:137,0:137:99:0,358,4501 0/0:153,0:153:99:0,373,4747 0/0:245,0:248:99:0,623,7745 0/0:155,0:155:99:0,415,5209 0/0:153,0:153:99:0,430,5364 0/0:185,0:185:99:0,502,6224 0/0:117,0:117:99:0,310,3885 0/0:160,0:160:99:0,436,5454 17 58529401 . A G 702.50 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.907;DP=2722;Dels=0.00;FS=1.615;HRun=1;HaplotypeScore=0.6263;InbreedingCoeff=-0.0120;MQ=59.40;MQ0=0;MQRankSum=0.978;QD=9.62;ReadPosRankSum=1.380 GT:AD:DP:GQ:PL 0/0:69,0:69:99:0,184,2331 0/0:46,0:46:99:0,132,1644 0/0:44,0:44:99:0,117,1502 0/0:96,0:96:99:0,253,3292 0/0:90,0:90:99:0,238,3145 0/0:90,0:90:99:0,250,3294 0/0:89,0:89:99:0,235,3099 0/1:44,29:73:99:749,0,1291 0/0:51,0:51:99:0,141,1779 0/0:45,0:45:99:0,120,1528 0/0:49,0:49:99:0,132,1677 0/0:65,0:65:99:0,181,2282 0/0:48,0:48:99:0,129,1647 0/0:47,0:47:99:0,126,1608 0/0:166,0:166:99:0,421,5394 0/0:46,0:46:99:0,126,1589 0/0:45,0:45:99:0,123,1563 0/0:53,0:53:99:0,144,1830 0/0:68,0:68:99:0,187,2366 0/0:84,0:84:99:0,208,2716 0/0:71,0:71:99:0,190,2417 0/0:61,0:61:99:0,172,2144 0/0:113,0:113:99:0,280,3741 0/0:86,0:86:99:0,208,2778 0/0:80,0:80:99:0,223,2910 0/0:85,0:85:99:0,220,2909 0/0:29,0:29:84.27:0,84,1070 0/0:65,0:65:99:0,190,2369 0/0:45,0:45:99:0,129,1639 0/0:54,0:54:99:0,138,1767 0/0:51,0:51:99:0,144,1829 0/0:75,1:76:99:0,208,2615 0/0:56,0:56:99:0,153,1931 0/0:47,0:47:99:0,132,1658 0/0:42,0:43:99:0,120,1509 0/0:53,0:53:99:0,141,1796 0/0:75,0:75:99:0,199,2529 0/0:54,0:54:99:0,144,1839 0/0:48,0:48:99:0,138,1727 0/0:57,0:57:99:0,169,2091 0/0:47,0:47:99:0,132,1664 0/0:62,0:62:99:0,172,2130 17 58786625 . A G 102941.51 . AC=82;AF=0.976;AN=84;BaseQRankSum=-0.333;DP=3190;Dels=0.00;FS=0.670;HRun=0;HaplotypeScore=1.4142;InbreedingCoeff=-0.0244;MQ=59.30;MQ0=0;MQRankSum=-1.567;QD=32.27;ReadPosRankSum=-1.687 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2117,171,0 1/1:0,73:73:99:2399,187,0 1/1:0,59:59:99:1926,150,0 1/1:0,162:162:99:5319,388,0 1/1:0,127:127:99:4547,331,0 0/1:73,48:121:99:1450,0,2102 0/1:69,51:120:99:1459,0,1902 1/1:0,113:113:99:4035,301,0 1/1:0,53:53:99:1861,144,0 1/1:0,58:58:99:1974,156,0 1/1:0,57:57:99:1930,156,0 1/1:0,48:48:99:1666,132,0 1/1:0,46:46:99:1488,117,0 1/1:0,46:46:99:1561,123,0 1/1:0,196:196:99:6467,509,0 1/1:0,35:35:96.30:1219,96,0 1/1:0,61:61:99:2027,156,0 1/1:0,62:62:99:2099,166,0 1/1:0,78:78:99:2635,208,0 1/1:0,79:79:99:2617,205,0 1/1:0,84:84:99:2568,205,0 1/1:0,56:56:99:1821,141,0 1/1:0,162:162:99:5820,424,0 1/1:0,113:113:99:3878,283,0 1/1:0,111:111:99:3962,289,0 1/1:0,106:106:99:3463,256,0 1/1:0,44:44:99:1498,117,0 1/1:0,56:56:99:1948,156,0 1/1:0,54:54:99:1716,132,0 1/1:0,62:62:99:1969,156,0 1/1:0,40:41:99:1441,114,0 1/1:0,66:66:99:2258,181,0 1/1:0,44:44:99:1619,129,0 1/1:0,55:55:99:1913,150,0 1/1:0,65:65:99:2249,178,0 1/1:0,63:64:99:2123,166,0 1/1:0,74:74:99:2485,199,0 1/1:0,61:61:99:1993,156,0 1/1:0,49:49:99:1746,138,0 1/1:0,58:58:99:1925,153,0 1/1:0,46:47:99:1553,123,0 1/1:0,61:61:99:2194,172,0 17 58786681 . A G 3135.80 . AC=2;AF=0.024;AN=84;BaseQRankSum=10.963;DP=2509;Dels=0.00;FS=2.364;HRun=0;HaplotypeScore=0.9347;InbreedingCoeff=-0.0244;MQ=59.37;MQ0=0;MQRankSum=0.536;QD=15.84;ReadPosRankSum=0.150 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,132,1590 0/0:49,0:49:99:0,132,1573 0/0:45,0:45:99:0,129,1521 0/0:119,0:119:99:0,346,4094 0/0:96,0:96:99:0,259,3153 0/1:47,54:101:99:1660,0,1230 0/1:47,50:97:99:1538,0,1283 0/0:99,0:100:99:0,256,3163 0/0:48,0:48:99:0,123,1496 0/0:48,0:48:99:0,132,1546 0/0:35,0:35:99:0,102,1181 0/0:42,0:42:99:0,123,1444 0/0:33,0:34:96.29:0,96,1148 0/0:28,0:29:84.25:0,84,990 0/0:158,0:158:99:0,421,5001 0/0:28,0:29:81.23:0,81,941 0/0:36,0:36:99:0,105,1221 0/0:36,0:36:99:0,105,1234 0/0:68,0:68:99:0,190,2254 0/0:57,0:57:99:0,159,1930 0/0:64,0:64:99:0,181,2180 0/0:38,0:38:99:0,105,1238 0/0:139,0:139:99:0,379,4572 0/0:93,0:94:99:0,253,3067 0/0:94,0:94:99:0,268,3258 0/0:87,0:87:99:0,226,2761 0/0:41,0:41:99:0,117,1382 0/0:40,0:40:99:0,108,1297 0/0:38,0:38:99:0,111,1309 0/0:37,0:37:99:0,105,1245 0/0:31,0:31:87.26:0,87,1047 0/0:62,0:64:99:0,162,1970 0/0:49,0:49:99:0,126,1551 0/0:41,0:41:99:0,120,1433 0/0:41,0:41:99:0,114,1359 0/0:46,0:47:99:0,126,1507 0/0:64,0:64:99:0,172,2062 0/0:45,0:46:99:0,123,1458 0/0:46,0:46:99:0,135,1601 0/0:43,0:43:99:0,120,1428 0/0:41,1:42:94.63:0,95,1337 0/0:47,0:47:99:0,141,1670 17 58945949 . G A 1320.05 . AC=1;AF=0.012;AN=84;BaseQRankSum=6.976;DP=2399;Dels=0.00;FS=3.509;HRun=0;HaplotypeScore=0.6948;InbreedingCoeff=-0.0120;MQ=59.48;MQ0=0;MQRankSum=0.600;QD=14.04;ReadPosRankSum=0.806 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,102,1123 0/0:46,0:46:99:0,120,1350 0/0:49,0:49:99:0,132,1494 0/0:123,0:123:99:0,316,3875 0/0:113,0:113:99:0,304,3771 0/0:87,0:87:99:0,238,2830 0/0:95,0:95:99:0,244,3049 0/1:47,47:94:99:1366,0,1230 0/0:39,0:39:99:0,105,1200 0/0:34,0:34:96.21:0,96,1046 0/0:47,0:47:99:0,117,1365 0/0:45,0:45:99:0,129,1424 0/0:42,0:42:99:0,114,1283 0/0:36,0:36:99:0,102,1123 0/0:164,0:164:99:0,397,4673 0/0:29,0:29:75.20:0,75,854 0/0:33,0:33:96.26:0,96,1083 0/0:41,0:41:99:0,111,1260 0/0:53,0:53:99:0,135,1544 0/0:49,0:50:99:0,129,1461 0/0:47,0:47:99:0,120,1342 0/0:33,0:33:96.25:0,96,1047 0/0:127,0:127:99:0,322,4084 0/0:102,1:103:99:0,245,3331 0/0:79,0:79:99:0,208,2547 0/0:88,0:88:99:0,241,2924 0/0:38,0:38:99:0,99,1151 0/0:35,0:35:93.24:0,93,1049 0/0:27,0:27:81.22:0,81,890 0/0:48,0:48:99:0,129,1453 0/0:37,0:37:99:0,99,1131 0/0:48,0:48:99:0,129,1463 0/0:34,0:34:87.24:0,87,1002 0/0:49,0:49:99:0,141,1555 0/0:40,0:40:99:0,114,1261 0/0:49,0:49:99:0,129,1434 0/0:43,0:43:99:0,120,1326 0/0:51,0:51:99:0,126,1473 0/0:46,0:46:99:0,132,1487 0/0:48,0:48:99:0,138,1533 0/0:32,0:32:90.22:0,90,980 0/0:40,0:40:99:0,108,1202 17 59534987 . T G 23787.19 . AC=19;AF=0.226;AN=84;BaseQRankSum=11.088;DP=2789;DS;Dels=0.00;FS=15.512;HRun=2;HaplotypeScore=1.8071;InbreedingCoeff=-0.1563;MQ=59.30;MQ0=0;MQRankSum=1.545;QD=17.04;ReadPosRankSum=1.521 GT:AD:DP:GQ:PL 0/0:68,0:68:99:0,196,2379 0/0:50,0:50:99:0,126,1536 0/0:48,0:48:99:0,129,1597 0/1:39,34:73:99:1104,0,1186 0/0:69,0:69:99:0,205,2526 0/0:62,0:62:99:0,178,2233 0/0:55,0:55:99:0,156,1950 0/0:59,0:60:99:0,169,2072 0/0:52,0:52:99:0,147,1775 0/0:54,0:54:99:0,147,1779 0/0:52,0:52:99:0,144,1760 0/0:47,2:49:95.92:0,96,1489 0/0:42,0:42:99:0,120,1465 0/1:26,18:44:99:516,0,778 0/1:90,121:211:99:3341,0,2409 0/1:26,34:60:99:990,0,720 0/1:25,38:63:99:1136,0,731 0/1:23,20:43:99:579,0,672 0/1:71,57:128:99:1582,0,1995 0/0:121,2:123:99:0,331,4068 1/1:1,122:123:99:3988,325,0 0/1:27,44:71:99:1300,0,694 0/1:48,45:93:99:1466,0,1364 0/1:17,20:37:99:610,0,501 0/0:49,0:49:99:0,135,1689 0/1:33,24:58:99:687,0,921 0/0:39,0:39:99:0,108,1329 0/0:40,0:40:99:0,114,1361 0/0:50,0:50:99:0,141,1734 0/0:49,0:49:99:0,138,1652 0/0:32,0:32:90.28:0,90,1118 0/1:52,83:135:99:2412,0,1441 0/0:73,0:73:99:0,208,2489 0/1:15,31:46:99:882,0,420 0/1:21,21:42:99:636,0,625 0/0:44,0:44:99:0,129,1588 0/0:125,0:126:99:0,346,4234 0/0:56,1:57:99:0,150,1867 0/1:24,36:60:99:1050,0,611 0/1:23,25:48:99:710,0,700 0/0:50,0:50:99:0,144,1766 0/1:31,29:61:99:800,0,913 17 59955426 . T G 94935.91 . AC=84;AF=1.000;AN=84;BaseQRankSum=2.730;DP=2698;Dels=0.00;FS=5.986;HRun=0;HaplotypeScore=0.7900;InbreedingCoeff=-0.0000;MQ=59.33;MQ0=0;MQRankSum=-0.493;QD=35.19;ReadPosRankSum=-0.275 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1548,123,0 1/1:0,48:48:99:1631,129,0 1/1:0,44:44:99:1504,117,0 1/1:0,120:120:99:4429,328,0 1/1:0,110:110:99:3966,289,0 1/1:0,84:84:99:2962,217,0 1/1:1,64:65:99:2430,178,0 1/1:0,77:77:99:2893,214,0 1/1:0,46:46:99:1676,132,0 1/1:0,48:48:99:1696,132,0 1/1:0,44:44:99:1569,126,0 1/1:0,43:43:99:1547,120,0 1/1:0,47:47:99:1639,126,0 1/1:0,39:39:99:1415,111,0 1/1:1,168:169:99:5419,412,0 1/1:0,37:37:99:1358,108,0 1/1:1,59:60:99:2046,129,0 1/1:0,57:57:99:2061,163,0 1/1:0,90:90:99:3150,247,0 1/1:0,96:96:99:3183,247,0 1/1:0,88:88:99:2915,226,0 1/1:0,55:55:99:1976,156,0 1/1:0,112:112:99:4113,301,0 1/1:0,85:85:99:3091,229,0 1/1:0,59:59:99:2080,153,0 1/1:0,72:72:99:2480,184,0 1/1:0,40:40:99:1513,120,0 1/1:0,52:52:99:1748,138,0 1/1:0,35:35:90.29:1175,90,0 1/1:0,46:46:99:1712,135,0 1/1:0,46:46:99:1644,129,0 1/1:1,100:101:99:3417,268,0 1/1:0,66:66:99:2297,181,0 1/1:0,54:54:99:1960,153,0 1/1:0,40:40:99:1431,111,0 1/1:0,61:61:99:2245,175,0 1/1:1,59:60:99:1902,147,0 1/1:0,45:45:99:1551,123,0 1/1:0,59:59:99:2119,166,0 1/1:0,59:59:99:2067,165,0 1/1:1,48:49:99:1691,132,0 1/1:0,47:47:99:1686,132,0 17 60758273 . G C 32418.35 . AC=82;AF=0.976;AN=84;BaseQRankSum=-2.645;DP=1023;Dels=0.00;FS=4.708;HRun=1;HaplotypeScore=0.6252;InbreedingCoeff=-0.0244;MQ=58.54;MQ0=0;MQRankSum=0.008;QD=31.69;ReadPosRankSum=-0.351 GT:AD:DP:GQ:PL 1/1:0,16:16:45.12:537,45,0 1/1:0,27:27:75.21:892,75,0 1/1:0,23:23:57.14:659,57,0 1/1:0,50:50:99:1736,138,0 1/1:0,50:50:99:1833,144,0 0/1:14,11:25:99:325,0,393 0/1:15,7:22:99:197,0,435 1/1:0,28:28:81.24:995,81,0 1/1:0,18:20:51.14:593,51,0 1/1:0,17:17:48.13:563,48,0 1/1:0,20:20:57.15:659,57,0 1/1:0,20:20:57.10:622,57,0 1/1:0,14:14:42.12:490,42,0 1/1:0,19:19:57.17:685,57,0 1/1:0,64:64:99:1873,159,0 1/1:0,22:22:57.14:635,57,0 1/1:0,12:12:33.10:402,33,0 1/1:0,20:20:54.14:636,54,0 1/1:0,29:29:78.23:931,78,0 1/1:0,47:47:99:1485,126,0 1/1:1,25:26:72.22:884,72,0 1/1:0,23:23:60.16:694,60,0 1/1:1,60:61:99:2011,162,0 1/1:0,17:17:51.16:634,51,0 1/1:0,19:19:51.14:624,51,0 1/1:0,27:27:75.23:966,75,0 1/1:0,12:12:36.10:419,36,0 1/1:0,18:18:48.15:584,48,0 1/1:0,16:16:39.12:484,39,0 1/1:0,19:19:48.14:589,48,0 1/1:0,13:13:39.11:454,39,0 1/1:0,41:41:99:1297,111,0 1/1:0,25:25:66.19:782,66,0 1/1:0,20:21:48.14:597,48,0 1/1:0,15:15:42.10:494,42,0 1/1:0,23:23:69.18:796,69,0 1/1:0,22:22:66.17:746,66,0 1/1:0,16:16:45.12:514,45,0 1/1:0,13:13:30.09:365,30,0 1/1:0,18:18:51.16:631,51,0 1/1:0,17:17:45.12:531,45,0 1/1:0,16:16:48.14:571,48,0 17 60758296 . A C 505.33 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.795;DP=1140;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.0787;InbreedingCoeff=-0.0244;MQ=58.61;MQ0=0;MQRankSum=0.943;QD=12.33;ReadPosRankSum=-1.467 GT:AD:DP:GQ:PL 0/0:16,1:17:45.13:0,45,535 0/0:26,0:26:72.22:0,72,862 0/0:20,1:21:60.18:0,60,709 0/0:53,0:55:99:0,141,1631 0/0:56,1:57:99:0,147,1788 0/0:35,0:35:87.22:0,87,1058 0/0:27,0:27:69.20:0,69,819 0/0:22,0:22:66.19:0,66,774 0/0:20,0:20:54.16:0,54,639 0/0:22,0:22:54.15:0,54,639 0/0:17,0:17:45.14:0,45,539 0/0:27,0:27:78.22:0,78,915 0/0:16,0:16:48.14:0,48,570 0/0:25,0:25:66.15:0,66,761 0/0:64,1:65:99:0,165,1945 0/0:20,0:20:60.15:0,60,679 0/0:18,0:18:45.12:0,45,525 0/0:20,0:20:54.15:0,54,642 0/0:30,1:31:78.18:0,78,889 0/0:40,1:41:99:0,105,1238 0/0:34,1:35:78.22:0,78,948 0/0:24,0:24:63.17:0,63,737 0/0:68,0:68:99:0,187,2200 0/1:9,11:20:99:273,0,245 0/1:12,9:21:99:294,0,323 0/0:33,1:35:81.24:0,81,992 0/0:10,0:10:27.07:0,27,306 0/0:21,0:21:54.12:0,54,616 0/0:24,0:24:66.18:0,66,763 0/0:25,0:25:60.15:0,60,699 0/0:17,0:17:48.12:0,48,537 0/0:41,0:41:99:0,111,1330 0/0:23,0:23:57.15:0,57,674 0/0:24,0:24:69.18:0,69,797 0/0:21,0:21:57.14:0,57,658 0/0:30,1:31:72.21:0,72,861 0/0:27,0:27:69.20:0,69,814 0/0:18,0:18:48.13:0,48,564 0/0:14,1:15:39.11:0,39,466 0/0:21,1:22:54.16:0,54,655 0/0:18,0:19:54.14:0,54,603 0/0:17,0:17:48.14:0,48,574 17 60769617 . G A 172.16 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.550;DP=566;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7107;InbreedingCoeff=-0.0158;MQ=58.85;MQ0=0;MQRankSum=0.651;QD=12.30;ReadPosRankSum=0.144 GT:AD:DP:GQ:PL 0/0:9,0:9:24.07:0,24,305 0/0:19,0:19:51.16:0,51,638 0/0:6,0:7:18.05:0,18,218 0/0:31,0:31:87.27:0,87,1139 0/0:23,0:23:63.20:0,63,835 0/0:22,0:22:63.21:0,63,863 0/0:17,0:17:48.15:0,48,629 0/0:23,0:23:60.19:0,60,798 0/0:9,0:9:21.07:0,21,266 0/0:4,0:4:12.04:0,12,153 0/0:14,0:14:39.12:0,39,486 0/0:4,0:4:12.04:0,12,154 0/0:10,0:10:24.08:0,24,307 0/0:11,0:11:27.08:0,27,331 0/0:40,0:40:99:0,108,1383 0/0:11,0:11:33.10:0,33,396 0/0:10,0:10:24.08:0,24,307 0/0:17,0:17:48.15:0,48,621 0/0:19,0:19:57.18:0,57,709 0/0:17,0:17:42.13:0,42,536 0/0:13,0:13:33.11:0,33,437 0/0:14,0:14:39.10:0,39,478 0/0:23,0:23:60.20:0,60,813 0/0:12,0:12:33.08:0,33,413 0/0:16,0:16:45.12:0,45,568 0/0:16,0:16:45.15:0,45,605 0/0:11,0:11:33.10:0,33,409 0/0:10,0:10:30.10:0,30,378 0/0:5,0:5:15.04:0,15,184 0/0:9,0:9:27.08:0,27,334 0/0:13,0:13:36.11:0,36,450 0/0:20,0:20:54.17:0,54,690 0/1:7,7:14:99:218,0,181 0/0:8,0:8:24.08:0,24,306 0/0:8,0:8:21.07:0,21,274 0/0:6,0:6:15.04:0,15,181 0/0:7,0:7:21.06:0,21,256 0/0:9,0:9:24.07:0,24,301 0/0:8,0:8:24.07:0,24,290 0/0:4,0:4:12.04:0,12,152 0/0:11,0:11:33.07:0,33,391 0/0:12,0:12:33.10:0,33,410 17 60769803 . A G 2965.60 . AC=34;AF=0.405;AN=84;BaseQRankSum=7.156;DP=280;Dels=0.00;FS=4.390;HRun=0;HaplotypeScore=0.1951;InbreedingCoeff=0.2915;MQ=57.93;MQ0=0;MQRankSum=0.975;QD=19.01;ReadPosRankSum=-1.565 GT:AD:DP:GQ:PL 0/1:4,2:6:62.06:62,0,102 0/0:6,0:6:18.06:0,18,221 0/0:5,0:5:15.05:0,15,180 0/1:1,3:4:24.09:109,0,24 0/0:6,0:6:18.06:0,18,217 0/0:4,0:4:12.04:0,12,149 1/1:0,3:3:6.02:79,6,0 0/0:2,0:2:6.02:0,6,74 0/1:3,3:6:64.96:104,0,65 0/1:9,2:11:12.90:13,0,248 0/0:7,0:7:18.05:0,18,218 0/0:4,0:4:12.04:0,12,148 0/1:6,2:8:49.76:50,0,192 0/1:2,4:6:55.46:107,0,55 0/1:6,12:18:99:321,0,145 1/1:0,8:8:21.04:250,21,0 0/1:3,4:7:74.49:74,0,91 0/0:6,0:6:18.06:0,18,220 0/0:13,0:13:36.09:0,36,428 0/0:14,0:14:39.12:0,39,484 1/1:0,9:9:21.06:267,21,0 0/1:1,5:6:22.32:105,0,22 1/1:0,3:3:9.03:122,9,0 0/1:1,3:4:25.77:93,0,26 1/1:0,4:4:12.04:156,12,0 1/1:0,5:5:15.05:190,15,0 0/1:8,3:11:56.15:56,0,236 1/1:0,7:7:18.06:234,18,0 0/0:4,0:4:12.03:0,12,136 0/0:5,0:5:15.05:0,15,180 0/0:3,0:3:9.03:0,9,104 0/0:7,0:8:15.05:0,15,193 0/0:10,0:10:24.07:0,24,294 1/1:0,10:10:27.08:340,27,0 1/1:0,4:4:12.04:153,12,0 0/1:0,2:2:0.97:77,6,0 0/0:13,0:13:33.10:0,33,398 0/0:10,0:10:27.08:0,27,329 0/1:4,2:6:49.22:49,0,101 0/1:2,3:5:52.95:67,0,53 0/0:4,0:4:12.04:0,12,144 1/1:0,3:3:9.03:115,9,0 17 61278191 . T C 4426.61 . 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T TGCCTCC 11731.72 . 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CA C 6895.28 . 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A C 48852.26 . 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G C 6.61 . 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G A 1841.57 . 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CG C 40942.97 . 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T C 144.02 . AC=10;AF=0.119;AN=84;BaseQRankSum=-17.899;DP=1197;Dels=0.00;FS=406.211;HRun=3;HaplotypeScore=0.8695;InbreedingCoeff=-0.1660;MQ=58.80;MQ0=0;MQRankSum=-1.019;QD=0.48;ReadPosRankSum=-11.308 GT:AD:DP:GQ:PL 0/1:20,9:29:22.76:23,0,566 0/1:18,6:24:10.32:10,0,443 0/0:26,5:31:68.78:0,69,814 0/0:26,12:38:7.80:0,8,810 0/0:18,4:22:19.44:0,19,469 0/0:18,5:23:26.47:0,26,603 0/0:16,5:21:0.95:6,0,499 0/0:16,6:22:42.04:0,42,498 0/0:17,12:29:9.40:0,9,479 0/0:22,8:31:57.17:0,57,686 0/0:16,11:27:2.48:1,0,490 0/0:28,7:35:18.90:0,19,773 0/0:15,11:26:15.91:0,16,456 0/1:15,11:26:65.21:65,0,373 0/0:64,30:94:99:0,112,1832 0/0:21,3:24:10.80:0,11,611 0/0:24,5:29:38.50:0,38,723 0/0:14,7:21:16.79:0,17,393 0/1:19,7:28:24.25:24,0,520 0/1:20,10:30:27.03:27,0,510 0/1:27,10:38:10.41:10,0,743 0/0:21,10:31:59.67:0,60,705 0/0:32,12:44:14.24:0,14,987 0/0:16,4:20:8.51:0,9,409 0/0:19,8:27:21.43:0,21,496 0/0:14,5:19:36.11:0,36,447 0/0:19,5:24:48.14:0,48,578 0/0:13,5:18:11.45:0,11,422 0/0:18,8:26:26.46:0,26,580 0/0:21,4:25:51.15:0,51,626 0/1:15,10:25:32.78:33,0,447 0/0:24,8:32:41.41:0,41,676 0/0:18,7:25:11.45:0,11,422 0/0:14,4:18:6.62:0,7,427 0/0:27,7:34:44.04:0,44,746 0/1:30,10:41:11.34:11,0,908 0/1:20,10:30:49.83:50,0,650 0/0:15,0:15:42.10:0,42,499 0/0:17,3:20:50.95:0,51,605 0/0:19,7:26:54.13:0,54,634 0/0:12,8:20:33.10:0,33,401 0/1:21,8:29:13.89:14,0,602 17 61776222 . A C 432.94 . AC=11;AF=0.131;AN=84;BaseQRankSum=-26.820;DP=3045;Dels=0.00;FS=2373.815;HRun=2;HaplotypeScore=3.1513;InbreedingCoeff=-0.1664;MQ=58.71;MQ0=1;MQRankSum=0.662;QD=0.49;ReadPosRankSum=-23.351 GT:AD:DP:GQ:PL 0/0:39,13:52:20.16:0,20,1179 0/0:35,14:49:62.98:0,63,1107 0/0:46,12:58:99:0,112,1468 0/0:163,80:244:57.78:0,58,4894 0/0:114,50:164:71.28:0,71,3604 0/0:70,20:90:67.33:0,67,2322 0/0:59,20:79:38.74:0,39,1803 0/0:74,28:102:99:0,164,2433 0/0:39,19:58:24.65:0,25,1220 0/0:38,17:55:51.81:0,52,1135 0/1:22,9:31:14.22:14,0,639 0/0:32,4:36:39.01:0,39,990 0/0:31,13:44:32.88:0,33,925 0/0:45,9:55:36.62:0,37,1355 0/1:118,52:173:19.23:19,0,3497 0/0:37,11:49:32.71:0,33,1186 0/0:29,5:34:32.94:0,33,921 0/1:19,14:33:99:119,0,582 0/1:50,28:78:52.21:52,0,1326 0/0:87,29:117:99:0,120,2620 0/0:64,30:94:34.38:0,34,1929 0/0:46,23:69:88.14:0,88,1410 0/1:133,70:203:37.63:38,0,3919 0/0:68,19:87:99:0,152,2221 0/0:76,19:96:99:0,116,2394 0/1:72,30:103:37.17:37,0,2189 0/0:26,11:37:34.73:0,35,774 0/0:37,18:55:45.19:0,45,1147 0/0:21,10:31:0.14:0,0,663 0/0:34,19:53:36.63:0,37,938 0/1:30,9:39:76.89:77,0,891 0/1:54,40:95:77.65:78,0,1554 0/0:44,21:65:49.96:0,50,1275 0/1:22,12:35:31.34:31,0,619 0/0:28,13:41:48.12:0,48,923 0/0:41,12:53:63.11:0,63,1318 0/0:38,15:54:1.45:4,0,1072 0/1:36,21:57:6.26:6,0,1120 0/1:28,15:43:93.98:94,0,826 0/0:28,17:45:38.52:0,39,793 0/0:38,8:46:61.93:0,62,1225 0/0:32,10:42:56.74:0,57,1039 17 61838691 . C T 3835.80 . AC=30;AF=0.357;AN=84;BaseQRankSum=-51.067;DP=7465;DS;Dels=0.00;FS=3200.000;HRun=3;HaplotypeScore=4.2073;InbreedingCoeff=-0.5469;MQ=58.79;MQ0=0;MQRankSum=-1.782;QD=0.72;ReadPosRankSum=-37.676 GT:AD:DP:GQ:PL 0/1:99,31:130:90.15:90,0,2978 0/1:119,36:157:15.94:16,0,3530 0/1:88,39:127:99:107,0,2516 0/1:179,71:250:99:186,0,5845 0/1:169,79:248:99:274,0,5420 0/0:178,53:231:93.59:0,94,5996 0/1:182,65:248:99:168,0,5789 0/1:183,56:240:99:102,0,5794 0/0:131,36:168:14.22:0,14,3825 0/1:102,39:141:99:207,0,2994 0/0:101,26:127:19.03:0,19,3303 0/1:87,33:121:99:150,0,2533 0/0:81,21:102:52.54:0,53,2495 0/1:129,42:171:16.48:16,0,3739 0/1:192,52:245:99:187,0,5907 0/1:95,37:133:99:206,0,2776 0/1:115,39:154:99:119,0,3366 0/1:119,35:154:31.27:31,0,3570 0/0:184,42:226:83.11:0,83,5749 0/0:196,37:233:99:0,325,6172 0/1:173,53:226:64.65:65,0,5007 0/1:105,40:145:99:181,0,3305 0/1:184,65:249:99:185,0,6220 0/1:185,61:246:99:153,0,5976 0/1:184,66:250:99:188,0,6183 0/0:189,48:239:20.21:0,20,6052 0/0:96,25:121:79.16:0,79,2993 0/1:108,38:146:99:267,0,3249 0/1:98,39:137:99:179,0,2937 0/1:123,40:163:77.87:78,0,3579 0/1:111,27:138:0.96:1,0,3472 0/0:167,42:209:99:0,113,5024 0/0:108,27:135:99:0,119,3362 0/1:116,34:150:69.47:69,0,3567 0/1:103,33:136:99:129,0,3209 0/0:131,38:169:5.83:0,6,3757 0/1:155,45:201:99:145,0,4803 0/1:139,39:179:99:144,0,4301 0/0:135,40:175:98.28:0,98,4249 0/1:143,42:185:78.66:79,0,4398 0/1:86,33:119:99:103,0,2575 0/1:112,28:140:11.02:11,0,3626 17 61888461 . G A 2524.08 . 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G C 164271.56 . AC=64;AF=0.762;AN=84;BaseQRankSum=-9.874;DP=6576;DS;Dels=0.00;FS=6.750;HRun=1;HaplotypeScore=2.4184;InbreedingCoeff=0.0812;MQ=59.53;MQ0=0;MQRankSum=1.959;QD=26.84;ReadPosRankSum=0.041 GT:AD:DP:GQ:PL 1/1:0,120:120:99:4132,319,0 1/1:0,148:148:99:4997,391,0 0/1:69,61:130:99:1868,0,1977 1/1:0,225:226:99:7809,575,0 0/1:108,115:223:99:3512,0,3448 0/1:95,91:186:99:2765,0,2881 1/1:1,142:143:99:4988,330,0 0/0:168,0:169:99:0,451,6120 1/1:0,146:146:99:5204,412,0 1/1:0,105:105:99:3591,280,0 1/1:0,110:110:99:3905,310,0 1/1:2,109:111:99:3546,225,0 1/1:0,110:110:99:3712,289,0 1/1:0,111:111:99:3804,298,0 1/1:0,248:250:99:8487,674,0 1/1:0,109:109:99:4004,319,0 0/1:101,62:163:99:1598,0,3044 1/1:2,129:131:99:4591,322,0 1/1:0,229:230:99:7856,623,0 1/1:0,238:238:99:8369,650,0 1/1:0,211:212:99:7103,560,0 1/1:0,140:140:99:4926,388,0 0/1:109,116:225:99:3520,0,3360 0/1:73,59:132:99:1679,0,2156 1/1:0,165:165:99:5744,424,0 0/1:84,84:168:99:2460,0,2628 1/1:0,93:93:99:3280,256,0 1/1:0,158:158:99:5545,436,0 0/1:64,61:125:99:1702,0,1905 0/1:86,63:149:99:1705,0,2522 0/1:59,69:128:99:2105,0,1746 1/1:0,224:224:99:7663,596,0 0/0:152,0:152:99:0,406,5229 1/1:0,133:133:99:4837,382,0 0/1:65,70:135:99:2022,0,1950 1/1:0,141:141:99:4808,373,0 0/1:126,115:241:99:3189,0,3577 0/1:84,66:150:99:1941,0,2532 1/1:0,150:150:99:5072,400,0 0/1:73,60:133:99:1749,0,2112 0/0:135,0:135:99:0,361,4566 1/1:0,128:128:99:4485,355,0 17 61987570 . G T 21046.85 . 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G A 21653.76 . 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A C 198.84 . 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T C 50390.67 . AC=32;AF=0.381;AN=84;BaseQRankSum=-8.744;DP=5095;DS;Dels=0.00;FS=3.614;HRun=0;HaplotypeScore=2.3888;InbreedingCoeff=0.0913;MQ=59.22;MQ0=0;MQRankSum=-0.491;QD=18.20;ReadPosRankSum=-0.729 GT:AD:DP:GQ:PL 0/0:96,0:96:99:0,277,3315 0/0:84,1:85:99:0,235,2851 0/1:44,54:98:99:1487,0,1188 0/1:95,77:172:99:2074,0,2467 1/1:1,149:150:99:5034,363,0 0/0:158,0:158:99:0,421,5372 0/1:55,54:109:99:1570,0,1646 0/0:137,0:137:99:0,358,4518 0/1:42,48:90:99:1292,0,1206 0/0:99,1:100:99:0,251,3348 0/1:49,40:89:99:1052,0,1371 0/1:46,39:87:99:1066,0,1317 0/1:39,38:77:99:956,0,1116 0/1:51,54:105:99:1439,0,1530 0/0:250,0:250:99:0,683,8319 0/0:104,0:104:99:0,292,3546 0/1:49,51:100:99:1441,0,1423 0/0:91,0:91:99:0,259,3104 0/0:191,0:193:99:0,539,6668 0/0:210,0:211:99:0,560,6960 0/0:173,0:173:99:0,475,5830 0/0:105,1:106:99:0,251,3418 0/1:122,94:217:99:2714,0,3360 0/0:128,0:128:99:0,334,4197 0/0:140,0:140:99:0,373,4699 0/1:66,48:114:99:1278,0,1946 0/0:92,0:92:99:0,262,3170 0/0:99,0:99:99:0,280,3394 0/1:49,50:99:99:1369,0,1361 1/1:0,105:105:99:3314,286,0 1/1:0,102:102:99:3393,295,0 0/0:164,0:164:99:0,439,5460 1/1:0,115:115:99:3662,316,0 0/1:57,36:93:99:962,0,1639 1/1:1,96:97:99:3016,225,0 0/1:48,47:95:99:1269,0,1297 0/1:96,79:175:99:2012,0,2656 0/1:41,46:87:99:1348,0,1136 1/1:1,92:93:99:2996,228,0 1/1:0,101:101:99:3291,283,0 0/1:50,40:90:99:1059,0,1415 0/1:58,49:107:99:1299,0,1747 17 62022382 . G A 1117.20 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.333;DP=1326;Dels=0.00;FS=1.998;HRun=0;HaplotypeScore=1.1152;InbreedingCoeff=-0.0244;MQ=58.87;MQ0=0;MQRankSum=-0.600;QD=15.52;ReadPosRankSum=1.280 GT:AD:DP:GQ:PL 0/0:23,0:23:60.16:0,60,703 0/0:31,0:31:81.21:0,81,917 0/0:16,0:16:45.12:0,45,512 0/0:60,0:60:99:0,144,1803 0/0:38,0:38:93.28:0,93,1187 0/0:21,0:21:57.16:0,57,691 0/0:25,0:25:63.19:0,63,797 0/0:22,0:22:51.15:0,51,632 0/0:23,0:23:63.17:0,63,726 0/0:31,0:31:78.21:0,78,900 0/0:27,0:27:75.21:0,75,895 0/0:23,0:23:60.17:0,60,707 0/0:11,0:11:33.09:0,33,366 0/0:24,0:24:69.18:0,69,779 0/0:72,0:72:99:0,184,2190 0/0:33,0:33:90.25:0,90,1048 0/0:35,0:35:93.22:0,93,1061 0/0:17,0:17:48.14:0,48,569 0/0:48,0:48:99:0,138,1595 0/0:59,0:59:99:0,156,1836 0/0:62,0:62:99:0,144,1737 0/0:44,0:44:99:0,114,1344 0/0:42,0:42:99:0,102,1321 0/0:28,0:28:72.22:0,72,894 0/0:26,0:26:69.19:0,69,840 0/0:23,0:23:48.14:0,48,624 0/0:24,0:24:66.18:0,66,784 0/0:18,0:18:54.12:0,54,608 0/0:25,0:25:63.19:0,63,769 0/0:29,0:29:66.16:0,66,778 0/0:27,0:27:78.21:0,78,884 0/0:56,0:56:99:0,138,1719 0/0:47,0:47:99:0,126,1466 0/0:24,0:24:57.16:0,57,689 0/0:31,0:31:84.24:0,84,1000 0/0:24,0:25:60.16:0,60,725 0/1:21,28:50:99:800,0,550 0/0:26,0:26:66.19:0,66,776 0/1:10,12:22:99:379,0,228 0/0:25,0:25:66.18:0,66,737 0/0:19,0:19:54.14:0,54,605 0/0:14,0:14:39.11:0,39,462 17 62049738 . G A 6699.51 . 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C T 1238.79 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.926;DP=1489;Dels=0.00;FS=3.340;HRun=0;HaplotypeScore=0.8865;InbreedingCoeff=-0.0244;MQ=59.17;MQ0=0;MQRankSum=1.048;QD=11.47;ReadPosRankSum=1.206 GT:AD:DP:GQ:PL 0/0:28,0:28:81.21:0,81,927 0/0:43,0:43:99:0,114,1337 0/0:27,0:27:75.22:0,75,901 0/0:71,0:71:99:0,181,2369 0/0:64,0:64:99:0,166,2174 0/0:37,0:37:93.30:0,93,1247 0/0:41,0:41:96.30:0,96,1241 0/0:35,0:35:84.27:0,84,1118 0/0:28,0:28:78.21:0,78,903 0/0:24,0:24:66.18:0,66,760 0/0:18,0:18:51.12:0,51,574 0/0:25,0:25:63.18:0,63,755 0/0:18,0:18:45.12:0,45,533 0/0:30,0:30:78.21:0,78,922 0/1:45,44:89:99:1099,0,1144 0/0:34,0:34:93.21:0,93,1055 0/1:11,8:19:99:202,0,328 0/0:26,0:26:75.17:0,75,830 0/0:48,0:48:99:0,132,1561 0/0:54,0:56:99:0,153,1747 0/0:73,0:74:99:0,193,2314 0/0:36,0:36:99:0,99,1168 0/0:64,0:64:99:0,160,2139 0/0:32,0:32:84.26:0,84,1076 0/0:48,0:48:99:0,126,1643 0/0:38,0:38:99:0,102,1307 0/0:27,0:27:69.19:0,69,795 0/0:23,0:23:69.18:0,69,781 0/0:19,0:19:51.13:0,51,569 0/0:21,0:21:57.17:0,57,682 0/0:30,0:30:72.20:0,72,856 0/0:49,0:50:99:0,138,1620 0/0:30,0:30:84.24:0,84,987 0/0:27,0:28:75.21:0,75,874 0/0:28,0:28:72.21:0,72,873 0/0:31,0:31:84.23:0,84,1004 0/0:43,0:43:99:0,105,1256 0/0:21,0:21:60.17:0,60,708 0/0:25,0:25:69.18:0,69,808 0/0:24,0:24:66.19:0,66,764 0/0:12,0:12:33.10:0,33,400 0/0:24,0:24:69.17:0,69,786 17 62080248 . C T 835.74 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.994;DP=1488;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7887;InbreedingCoeff=-0.0244;MQ=59.12;MQ0=0;MQRankSum=0.885;QD=13.70;ReadPosRankSum=-1.531 GT:AD:DP:GQ:PL 0/0:22,0:22:54.15:0,54,636 0/0:30,0:30:75.20:0,75,896 0/0:31,0:31:78.21:0,78,921 0/0:81,0:81:99:0,211,2635 0/0:72,0:72:99:0,187,2390 0/0:36,0:36:90.28:0,90,1148 0/0:32,0:32:87.26:0,87,1103 0/0:46,0:46:99:0,117,1468 0/1:13,19:32:99:509,0,320 0/0:15,0:15:45.11:0,45,496 0/1:14,15:29:99:389,0,368 0/0:31,0:31:87.22:0,87,961 0/0:27,0:27:72.19:0,72,842 0/0:24,0:24:66.18:0,66,765 0/0:88,0:89:99:0,199,2446 0/0:34,0:34:81.21:0,81,921 0/0:31,0:31:81.23:0,81,976 0/0:25,0:25:69.16:0,69,782 0/0:46,0:46:99:0,114,1337 0/0:51,0:51:99:0,123,1555 0/0:37,0:37:99:0,99,1162 0/0:27,0:27:78.21:0,78,891 0/0:81,0:81:99:0,208,2667 0/0:34,0:34:90.26:0,90,1159 0/0:45,0:45:99:0,117,1498 0/0:33,0:33:90.27:0,90,1128 0/0:22,0:22:60.16:0,60,695 0/0:27,0:27:72.20:0,72,828 0/0:28,0:28:78.22:0,78,918 0/0:36,0:36:99:0,99,1171 0/0:24,0:24:66.17:0,66,754 0/0:38,0:38:99:0,99,1192 0/0:27,0:27:66.19:0,66,793 0/0:30,0:30:87.21:0,87,969 0/0:24,0:24:57.14:0,57,654 0/0:32,0:32:84.26:0,84,1047 0/0:36,0:36:96.25:0,96,1073 0/0:16,0:16:48.11:0,48,533 0/0:37,0:37:99:0,105,1170 0/0:24,0:24:69.18:0,69,782 0/0:22,0:22:54.14:0,54,619 0/0:24,0:24:66.19:0,66,785 17 62121480 . T C 51467.27 . AC=58;AF=0.690;AN=84;BaseQRankSum=-14.660;DP=2385;Dels=0.00;FS=8.305;HRun=0;HaplotypeScore=1.6572;InbreedingCoeff=0.1088;MQ=58.95;MQ0=0;MQRankSum=1.148;QD=24.06;ReadPosRankSum=-2.804 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1458,132,0 0/1:20,10:30:99:224,0,629 0/1:25,19:44:99:500,0,692 1/1:0,149:149:99:5129,433,0 0/1:61,55:116:99:1567,0,1835 0/0:83,1:85:99:0,206,2923 0/1:36,30:66:99:730,0,1082 0/1:47,37:84:99:1053,0,1391 0/0:37,0:37:99:0,108,1289 0/1:24,17:41:99:406,0,679 0/1:17,27:44:99:737,0,471 0/1:26,22:49:99:515,0,729 1/1:0,29:30:87.21:934,87,0 0/1:19,17:36:99:453,0,565 1/1:0,109:109:99:3430,310,0 1/1:0,48:48:99:1513,138,0 1/1:0,49:49:99:1472,138,0 1/1:0,37:37:99:1160,108,0 1/1:0,46:46:99:1499,138,0 1/1:0,94:94:99:2877,259,0 0/1:36,32:68:99:851,0,1004 0/1:23,38:61:99:1029,0,494 1/1:0,129:129:99:4444,367,0 1/1:0,67:67:99:2313,193,0 1/1:0,69:69:99:2354,196,0 1/1:0,74:74:99:2462,202,0 1/1:0,28:28:75.20:842,75,0 1/1:0,48:48:99:1581,144,0 1/1:0,33:33:96.25:1054,96,0 0/0:36,0:37:99:0,108,1286 0/0:39,0:39:99:0,108,1321 0/1:35,28:63:99:699,0,1007 0/1:25,26:51:99:665,0,725 1/1:0,35:35:99:1107,105,0 1/1:0,35:35:96.23:1050,96,0 1/1:0,47:47:99:1438,129,0 0/1:37,36:73:99:900,0,1104 0/0:48,0:48:99:0,132,1585 1/1:0,31:31:84.21:919,84,0 0/1:17,15:32:99:354,0,494 1/1:0,38:39:99:1194,111,0 0/1:15,21:37:99:557,0,456 17 62125272 . A G 83609.34 . 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A G 30232.39 . AC=82;AF=0.976;AN=84;BaseQRankSum=0.087;DP=907;Dels=0.00;FS=5.525;HRun=0;HaplotypeScore=0.5112;InbreedingCoeff=-0.0296;MQ=58.78;MQ0=0;MQRankSum=-0.084;QD=33.33;ReadPosRankSum=-0.334 GT:AD:DP:GQ:PL 1/1:0,17:17:51.14:619,51,0 1/1:0,40:40:99:1361,114,0 1/1:0,24:24:54.17:702,54,0 1/1:0,25:25:69.22:907,69,0 1/1:0,19:19:57.18:746,57,0 0/1:15,12:28:99:343,0,456 0/1:8,7:15:99:243,0,218 1/1:0,18:18:51.15:656,51,0 1/1:0,16:16:36.12:480,36,0 1/1:0,18:18:51.16:638,51,0 1/1:0,20:20:54.15:662,54,0 1/1:0,15:15:45.13:537,45,0 1/1:0,18:18:54.16:652,54,0 1/1:0,21:21:63.17:738,63,0 1/1:0,52:52:99:1698,138,0 1/1:0,21:21:60.17:721,60,0 1/1:0,18:18:54.15:649,54,0 1/1:0,22:22:63.18:770,63,0 1/1:0,33:33:87.26:1093,87,0 1/1:0,36:37:96.27:1187,96,0 1/1:0,25:25:75.22:914,75,0 1/1:0,19:19:54.17:680,54,0 1/1:0,26:26:78.25:1021,78,0 1/1:0,16:16:45.15:600,45,0 1/1:0,19:19:51.15:647,51,0 1/1:1,11:12:1.55:369,2,0 1/1:0,9:9:24.08:306,24,0 1/1:0,17:17:48.15:603,48,0 1/1:0,16:16:45.11:537,45,0 1/1:0,13:13:39.11:466,39,0 1/1:0,23:23:63.19:760,63,0 1/1:0,36:36:96.29:1209,96,0 1/1:0,20:20:60.17:737,60,0 1/1:0,16:16:48.14:572,48,0 1/1:0,16:16:48.15:598,48,0 1/1:0,27:27:69.21:851,69,0 1/1:0,27:27:75.21:912,75,0 1/1:0,15:15:39.11:479,39,0 1/1:0,20:20:57.17:689,57,0 1/1:0,19:20:54.15:657,54,0 1/1:0,14:14:36.10:422,36,0 1/1:0,23:23:63.20:800,63,0 17 62248511 . C T 911.31 . 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G A 1355.03 . AC=3;AF=0.036;AN=84;BaseQRankSum=-7.183;DP=2262;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.6400;InbreedingCoeff=-0.0370;MQ=59.26;MQ0=0;MQRankSum=1.099;QD=11.11;ReadPosRankSum=-0.397 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,117,1494 0/0:45,0:45:99:0,126,1633 0/0:41,0:41:93.30:0,93,1260 0/0:110,0:110:99:0,295,4030 0/0:93,0:93:99:0,229,3225 0/0:90,0:90:99:0,247,3391 0/0:91,0:91:99:0,223,3116 0/0:82,0:82:99:0,217,2970 0/0:39,0:39:93.30:0,93,1241 0/0:31,0:31:84.27:0,84,1083 0/0:44,0:44:99:0,114,1493 0/0:43,0:43:99:0,120,1542 0/0:38,0:38:99:0,99,1300 0/0:42,0:42:99:0,114,1490 0/0:146,0:146:99:0,361,4783 0/0:27,0:27:75.24:0,75,966 0/0:34,0:34:96.30:0,96,1236 0/0:24,0:24:66.21:0,66,863 0/0:67,0:67:99:0,166,2169 0/0:58,0:58:99:0,150,1979 0/0:69,0:69:99:0,175,2261 0/0:55,0:55:99:0,132,1760 0/0:85,0:85:99:0,220,3073 0/0:87,0:87:99:0,229,3143 0/0:66,0:66:99:0,187,2599 0/0:71,0:71:99:0,181,2520 0/0:21,0:21:63.20:0,63,793 0/0:41,0:41:99:0,105,1378 0/0:37,0:37:99:0,105,1359 0/0:32,0:32:87.28:0,87,1150 0/0:39,0:39:99:0,105,1361 0/0:51,0:51:99:0,135,1766 0/0:27,0:27:66.19:0,66,865 0/0:37,0:37:99:0,105,1355 0/1:32,12:44:99:336,0,900 0/0:47,0:47:99:0,117,1549 0/0:54,0:54:99:0,141,1833 0/0:49,0:49:99:0,135,1758 0/0:46,1:47:99:0,120,1596 0/1:26,20:46:99:544,0,810 0/1:15,17:32:99:551,0,396 0/0:39,0:39:99:0,102,1328 17 62496670 . A C 2796.33 . AC=8;AF=0.095;AN=84;BaseQRankSum=9.877;DP=1120;Dels=0.00;FS=10.688;HRun=0;HaplotypeScore=0.4622;InbreedingCoeff=-0.1053;MQ=59.40;MQ0=0;MQRankSum=1.359;QD=15.12;ReadPosRankSum=0.778 GT:AD:DP:GQ:PL 0/1:12,12:24:99:384,0,371 0/1:12,7:19:99:211,0,358 0/1:5,10:15:99:310,0,138 0/1:16,8:24:99:250,0,516 0/1:9,16:25:99:537,0,262 0/0:37,0:37:93.30:0,93,1214 0/0:22,0:22:57.18:0,57,729 0/1:13,15:28:99:507,0,377 0/0:31,0:31:81.24:0,81,997 0/0:24,0:24:72.22:0,72,856 0/0:31,0:31:93.28:0,93,1119 0/0:23,0:23:60.19:0,60,751 0/0:22,0:22:63.19:0,63,763 0/0:26,0:26:69.22:0,69,876 0/0:82,0:82:99:0,229,2766 0/0:27,0:27:78.24:0,78,946 0/0:16,0:16:48.15:0,48,598 0/0:22,0:22:63.19:0,63,772 0/0:30,0:30:87.27:0,87,1080 0/0:33,0:33:90.26:0,90,1104 0/0:23,0:23:66.19:0,66,798 0/0:24,0:24:69.21:0,69,842 0/0:38,0:38:99:0,105,1309 0/0:33,0:33:96.28:0,96,1163 0/1:12,16:28:99:523,0,364 0/0:31,0:31:93.29:0,93,1156 0/0:15,0:15:42.13:0,42,516 0/0:13,0:13:39.12:0,39,478 0/0:26,0:26:78.24:0,78,945 0/0:32,0:32:96.30:0,96,1167 0/0:24,1:25:72.22:0,72,881 0/0:24,0:24:72.22:0,72,878 0/0:28,0:28:81.25:0,81,987 0/0:26,0:26:75.23:0,75,925 0/0:25,0:25:72.22:0,72,888 0/0:30,0:30:78.24:0,78,966 0/0:20,0:20:57.18:0,57,706 0/0:29,0:29:81.25:0,81,995 0/0:19,0:19:51.16:0,51,630 0/0:16,0:16:48.13:0,48,574 0/1:15,7:22:99:195,0,445 0/0:32,0:32:90.27:0,90,1098 17 62518969 . T C 250.18 . AC=11;AF=0.131;AN=84;BaseQRankSum=-11.061;DP=1153;Dels=0.00;FS=70.316;HRun=4;HaplotypeScore=0.4716;InbreedingCoeff=-0.1868;MQ=58.73;MQ0=0;MQRankSum=0.233;QD=0.87;ReadPosRankSum=-6.165 GT:AD:DP:GQ:PL 0/0:16,4:20:41.33:0,41,458 0/0:14,4:18:4.43:0,4,314 0/0:13,4:17:7.38:0,7,297 0/1:21,26:47:11.20:11,0,407 0/1:15,15:30:16.39:16,0,283 0/0:18,7:25:18.01:0,18,187 0/1:8,12:20:3.25:3,0,199 0/0:12,10:22:21.06:0,21,242 0/0:25,9:34:60.17:0,60,704 0/0:11,6:17:18.04:0,18,198 0/0:16,6:22:2.18:2,0,396 0/0:19,9:29:12.40:0,12,365 0/0:15,12:27:44.80:0,45,506 0/0:11,3:15:18.05:0,18,217 0/0:57,22:79:99:0,135,1567 0/1:12,10:22:50.74:51,0,296 0/0:18,14:32:42.09:0,42,480 0/1:9,12:21:9.25:9,0,260 0/1:13,13:26:39.80:40,0,364 0/0:34,6:40:66.12:0,66,735 0/1:24,19:43:99:102,0,502 0/0:25,12:37:36.45:0,36,644 0/0:20,12:32:39.09:0,39,455 0/0:12,9:21:21.06:0,21,254 0/0:17,10:27:36.05:0,36,387 0/0:19,8:27:33.06:0,33,347 0/1:12,8:20:33.96:34,0,253 0/0:17,5:22:8.44:0,8,366 0/1:11,6:17:28.23:28,0,172 0/0:15,10:25:39.12:0,39,468 0/0:12,6:18:2.34:1,0,282 0/0:27,8:35:51.13:0,51,589 0/0:19,22:41:3.72:0,4,430 0/1:13,7:20:22.16:22,0,335 0/0:8,7:15:18.04:0,18,209 0/0:15,7:23:1.54:0,2,311 0/0:22,12:35:25.44:0,25,512 0/0:20,9:29:7.45:0,7,360 0/1:12,10:22:59.66:60,0,287 0/0:13,9:22:21.07:0,21,260 0/0:20,8:28:25.44:0,25,516 0/0:24,7:31:25.46:0,25,551 17 62587242 . G A 5624.41 . AC=2;AF=0.024;AN=84;BaseQRankSum=6.453;DP=4639;DS;Dels=0.00;FS=7.227;HRun=1;HaplotypeScore=1.1989;InbreedingCoeff=-0.0244;MQ=59.39;MQ0=0;MQRankSum=0.429;QD=13.99;ReadPosRankSum=1.622 GT:AD:DP:GQ:PL 0/0:62,0:63:99:0,168,2033 0/0:92,0:92:99:0,232,2841 0/0:85,0:85:99:0,220,2686 0/0:244,0:244:99:0,632,8311 0/0:222,0:222:99:0,563,7572 0/1:104,111:215:99:3098,0,2909 0/1:98,89:187:99:2526,0,2822 0/0:208,0:208:99:0,545,7097 0/0:80,0:80:99:0,211,2527 0/0:82,0:82:99:0,205,2568 0/0:77,0:77:99:0,211,2527 0/0:86,0:86:99:0,229,2799 0/0:75,0:75:99:0,202,2400 0/0:77,0:77:99:0,190,2389 0/0:250,0:250:99:0,620,7566 0/0:37,0:37:87.27:0,87,1103 0/0:76,0:76:99:0,202,2469 0/0:89,0:89:99:0,241,2939 0/0:108,0:108:99:0,277,3309 0/0:96,0:96:99:0,232,2888 0/0:89,0:89:99:0,220,2722 0/0:48,0:48:99:0,120,1466 0/0:248,0:248:99:0,635,8424 0/0:200,0:200:99:0,497,6569 0/0:219,0:219:99:0,539,7246 0/0:199,0:199:99:0,478,6333 0/0:55,0:55:99:0,156,1894 0/0:80,0:80:99:0,220,2625 0/0:68,0:68:99:0,187,2249 0/0:76,0:76:99:0,190,2301 0/0:79,0:79:99:0,214,2595 0/0:110,0:110:99:0,274,3386 0/0:56,0:56:99:0,147,1817 0/0:66,0:66:99:0,171,2069 0/0:75,0:75:99:0,208,2548 0/0:72,0:72:99:0,190,2268 0/0:96,0:96:99:0,238,2896 0/0:71,0:71:99:0,193,2326 0/0:77,0:77:99:0,217,2612 0/0:86,0:86:99:0,217,2629 0/0:56,0:56:99:0,144,1769 0/0:64,0:64:99:0,178,2181 17 62589578 . T C 906.40 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.372;DP=4476;DS;Dels=0.00;FS=3.331;HRun=0;HaplotypeScore=3.0498;InbreedingCoeff=-0.0120;MQ=59.30;MQ0=0;MQRankSum=1.550;QD=14.16;ReadPosRankSum=-0.868 GT:AD:DP:GQ:PL 0/0:90,0:92:99:0,229,2682 0/0:87,1:91:99:0,226,2651 0/0:79,0:79:99:0,193,2278 0/0:179,0:180:99:0,433,5301 0/0:157,0:157:99:0,403,4929 0/0:148,0:151:99:0,355,4304 0/0:135,0:135:99:0,340,4129 0/0:151,0:152:99:0,364,4465 0/0:100,0:103:99:0,244,2883 0/0:88,0:91:99:0,220,2536 0/0:77,0:79:99:0,199,2322 0/0:85,0:90:99:0,204,2409 0/0:86,0:89:99:0,220,2583 0/0:72,0:73:99:0,174,2074 0/0:215,1:233:99:0,544,6395 0/0:56,0:57:99:0,141,1606 0/0:83,1:89:99:0,211,2510 0/0:88,0:88:99:0,220,2620 0/0:116,0:135:99:0,274,3403 0/0:118,0:120:99:0,295,3608 0/0:106,0:122:99:0,247,2982 0/0:73,0:74:99:0,189,2194 0/0:157,0:160:99:0,388,4734 0/0:121,1:126:99:0,298,3634 0/0:150,0:152:99:0,370,4582 0/0:170,0:173:99:0,415,5168 0/0:72,0:73:99:0,180,2053 0/0:65,0:67:99:0,177,2085 0/0:90,0:92:99:0,217,2559 0/0:76,0:77:99:0,192,2211 0/1:30,32:64:99:953,0,761 0/0:124,0:126:99:0,328,3997 0/0:91,0:94:99:0,235,2768 0/0:88,1:94:99:0,226,2694 0/0:68,0:72:99:0,177,2051 0/0:76,0:81:99:0,196,2310 0/0:99,0:119:99:0,244,2949 0/0:97,0:98:99:0,253,3014 0/0:74,0:76:99:0,192,2209 0/0:96,0:97:99:0,238,2803 0/0:57,0:60:99:0,150,1751 0/0:92,0:95:99:0,232,2758 17 64023624 . T C 5798.93 . 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A G 3115.12 . 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C T 7186.35 . 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A G 5896.55 . 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G A 116087.19 . 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G A 11220.78 . 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C CT 64.65 . 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G A 1033.87 . AC=3;AF=0.036;AN=84;BaseQRankSum=0.091;DP=2073;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.6945;InbreedingCoeff=-0.0370;MQ=58.73;MQ0=0;MQRankSum=0.499;QD=13.09;ReadPosRankSum=1.133 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,120,1361 0/0:40,0:40:99:0,111,1287 0/0:31,0:31:81.23:0,81,980 0/0:103,0:103:99:0,298,3745 0/0:90,0:90:99:0,259,3267 0/0:57,0:57:99:0,159,1973 0/0:51,0:51:99:0,144,1854 0/0:64,0:64:99:0,177,2176 0/0:43,0:43:99:0,120,1472 0/1:13,16:29:99:463,0,309 0/0:35,0:35:99:0,102,1232 0/0:47,0:47:99:0,138,1620 0/0:24,1:25:34.40:0,34,762 0/0:37,0:37:99:0,102,1212 0/0:110,0:110:99:0,313,3690 0/0:37,0:37:99:0,102,1218 0/0:46,0:46:99:0,126,1439 0/0:37,0:37:99:0,102,1231 0/0:61,1:62:99:0,134,1905 0/0:78,1:80:99:0,189,2512 0/0:60,0:60:99:0,162,1840 0/0:46,0:46:99:0,120,1440 0/0:116,0:116:99:0,316,3927 0/0:48,0:48:99:0,129,1636 0/0:75,0:75:99:0,217,2691 0/0:57,0:57:99:0,166,2107 0/1:15,12:27:99:374,0,326 0/1:14,9:23:99:273,0,359 0/0:23,0:23:66.19:0,66,794 0/0:34,0:34:96.29:0,96,1156 0/0:37,0:37:99:0,111,1307 0/0:66,0:66:99:0,168,1967 0/0:42,0:43:99:0,108,1258 0/0:38,0:38:99:0,108,1280 0/0:36,0:36:99:0,102,1172 0/0:32,0:32:93.27:0,93,1107 0/0:52,0:52:99:0,135,1551 0/0:35,0:35:99:0,102,1151 0/0:38,0:38:99:0,111,1326 0/0:43,0:43:99:0,123,1460 0/0:39,0:39:99:0,108,1292 0/0:39,0:39:99:0,114,1363 17 64873552 . G A 7874.67 . 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C T 691.86 . 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G T 166.77 . 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A G 22175.74 . AC=59;AF=0.702;AN=84;BaseQRankSum=-4.467;DP=1131;Dels=0.00;FS=4.008;HRun=0;HaplotypeScore=0.8725;InbreedingCoeff=-0.3098;MQ=59.32;MQ0=0;MQRankSum=0.865;QD=19.94;ReadPosRankSum=-4.946 GT:AD:DP:GQ:PL 0/1:22,14:36:99:344,0,655 1/1:0,21:21:51.14:588,51,0 0/1:15,9:24:99:186,0,392 0/1:28,17:45:99:456,0,822 1/1:0,44:44:99:1557,123,0 1/1:0,12:12:36.11:455,36,0 1/1:0,21:21:60.17:725,60,0 1/1:0,23:24:54.14:658,54,0 0/1:12,10:22:99:233,0,355 0/1:9,10:20:99:267,0,240 0/1:12,12:24:99:312,0,359 0/1:14,6:20:99:150,0,391 0/0:19,0:19:51.15:0,51,619 1/1:0,18:18:45.11:525,45,0 1/1:0,75:76:99:2221,192,0 1/1:0,26:26:69.19:802,69,0 0/1:12,11:23:99:274,0,349 0/1:15,9:25:99:218,0,405 1/1:0,28:28:78.19:895,78,0 1/1:0,33:33:87.24:1018,87,0 0/1:26,11:38:99:218,0,778 1/1:0,17:17:48.13:570,48,0 0/1:25,31:56:99:839,0,712 1/1:0,12:12:36.09:433,36,0 0/1:14,14:28:99:383,0,439 0/1:13,6:19:99:168,0,364 0/1:8,9:17:99:235,0,235 0/1:11,6:17:99:166,0,321 1/1:0,19:19:54.12:588,54,0 0/1:15,10:25:99:214,0,468 0/1:11,11:22:99:278,0,336 0/1:16,18:34:99:407,0,455 1/1:0,33:33:96.24:1071,96,0 1/1:0,27:27:69.20:819,69,0 0/1:12,12:24:99:316,0,355 1/1:0,33:33:81.21:924,81,0 1/1:0,34:34:93.24:1044,93,0 0/1:12,7:19:99:177,0,373 1/1:0,24:24:69.18:805,69,0 0/1:18,15:33:99:377,0,522 0/1:15,5:20:47.60:48,0,442 0/1:11,8:19:99:215,0,316 17 66872663 . C T 3207.28 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.955;DP=4760;DS;Dels=0.00;FS=27.369;HRun=0;HaplotypeScore=3.5648;InbreedingCoeff=-0.0244;MQ=55.76;MQ0=31;MQRankSum=3.716;QD=12.68;ReadPosRankSum=0.849 GT:AD:DP:GQ:PL 0/0:106,0:106:99:0,298,3410 0/0:95,0:95:99:0,262,3020 0/0:79,0:79:99:0,211,2356 0/0:181,0:181:99:0,469,5821 0/0:190,0:191:99:0,512,6349 0/0:123,0:123:99:0,337,4239 0/0:113,0:113:99:0,292,3631 0/0:106,0:106:99:0,283,3428 0/0:111,0:111:99:0,304,3476 0/0:70,0:70:99:0,193,2227 0/0:98,0:98:99:0,259,3062 0/0:89,0:90:99:0,247,2805 0/0:85,0:85:99:0,232,2600 0/0:98,0:99:99:0,280,3202 0/0:247,0:247:99:0,680,7848 0/0:86,0:87:99:0,235,2693 0/0:80,0:80:99:0,220,2517 0/0:95,0:95:99:0,244,2801 0/0:156,0:157:99:0,427,4891 0/0:164,0:164:99:0,415,4975 0/0:160,0:160:99:0,418,4922 0/0:98,0:98:99:0,271,3120 0/0:194,0:194:99:0,503,6280 0/0:106,0:106:99:0,292,3586 0/0:117,0:117:99:0,310,3881 0/0:121,0:121:99:0,313,3928 0/0:72,0:72:99:0,199,2250 0/0:78,0:78:99:0,223,2521 0/0:73,0:73:99:0,205,2345 0/0:75,0:75:99:0,211,2422 0/0:84,0:84:99:0,238,2685 0/0:167,0:167:99:0,448,5274 0/0:95,0:95:99:0,265,2980 0/0:95,0:95:99:0,259,3005 0/0:95,0:95:99:0,280,3215 0/0:114,0:115:99:0,304,3494 0/1:79,86:165:99:2337,0,1890 0/0:109,0:109:99:0,292,3399 0/1:51,37:88:99:933,0,1415 0/0:94,0:94:99:0,247,2900 0/0:84,0:84:99:0,223,2596 0/0:98,0:98:99:0,268,3066 17 66881376 . T G 3015.34 . 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T C 937.75 . AC=18;AF=0.214;AN=84;BaseQRankSum=-27.563;DP=3199;Dels=0.00;FS=1206.278;HRun=2;HaplotypeScore=2.5941;InbreedingCoeff=-0.2842;MQ=59.04;MQ0=0;MQRankSum=-2.910;QD=0.80;ReadPosRankSum=-19.562 GT:AD:DP:GQ:PL 0/1:50,27:77:43.55:44,0,1298 0/0:38,22:60:78.68:0,79,1201 0/1:34,18:53:28.72:29,0,1075 0/0:66,58:124:72.34:0,72,1980 0/0:49,36:85:40.84:0,41,1493 0/0:59,43:102:28.46:0,28,1642 0/0:50,36:86:99:0,123,1423 0/0:58,32:90:99:0,109,1584 0/0:32,9:41:66.25:0,66,978 0/0:40,27:68:30.58:0,31,1170 0/0:49,28:77:11.41:0,11,1188 0/1:38,33:72:52.16:52,0,1077 0/0:31,15:46:20.16:0,20,830 0/1:45,28:73:27.17:27,0,1137 0/0:130,72:202:18.85:0,19,3557 0/1:18,19:37:49.42:49,0,502 0/1:47,20:67:49.13:49,0,1211 0/0:53,28:82:45.50:0,45,1497 0/1:55,29:84:11.09:11,0,1627 0/0:70,25:95:99:0,112,1732 0/0:49,29:78:0.17:0,0,1264 0/0:35,21:56:97.45:0,97,1087 0/0:70,53:124:27.21:0,27,2061 0/0:63,29:92:99:0,152,1951 0/0:55,32:87:89.69:0,90,1537 0/0:48,37:85:66.43:0,66,1427 0/1:27,29:56:63.24:63,0,724 0/1:49,24:73:56.74:57,0,1227 0/1:37,20:57:81.59:82,0,1030 0/1:33,34:67:99:180,0,830 0/0:36,19:55:32.48:0,32,1108 0/0:70,31:102:69.98:0,70,1849 0/1:28,30:58:59.48:59,0,766 0/1:44,32:76:50.24:50,0,1086 0/1:42,33:75:67.46:67,0,1106 0/0:40,12:52:48.11:0,48,1138 0/1:42,20:62:80.68:81,0,1054 0/0:45,22:67:10.67:0,11,1242 0/1:36,24:60:96.33:96,0,949 0/1:41,26:67:42.24:42,0,1191 0/0:46,18:65:43.89:0,44,1325 0/1:33,30:64:63.49:63,0,800 17 66929335 . C G 30.12 . 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T C 2253.92 . AC=2;AF=0.024;AN=84;BaseQRankSum=6.859;DP=2408;Dels=0.00;FS=2.442;HRun=0;HaplotypeScore=0.4217;InbreedingCoeff=-0.0244;MQ=59.45;MQ0=0;MQRankSum=1.167;QD=11.80;ReadPosRankSum=0.703 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,105,1251 0/0:39,0:39:99:0,108,1341 0/0:44,0:44:99:0,126,1517 0/0:119,0:119:99:0,355,4292 0/0:111,0:111:99:0,298,3742 0/1:47,44:91:99:1326,0,1531 0/1:64,36:100:99:990,0,1934 0/0:92,0:92:99:0,256,3147 0/0:35,0:35:93.27:0,93,1161 0/0:50,0:50:99:0,144,1737 0/0:38,0:38:99:0,108,1314 0/0:48,0:48:99:0,132,1631 0/0:39,0:39:99:0,108,1325 0/0:34,0:34:90.27:0,90,1098 0/0:136,0:136:99:0,373,4519 0/0:33,0:33:87.27:0,87,1078 0/0:37,0:37:99:0,108,1303 0/0:38,0:38:99:0,111,1345 0/0:55,0:55:99:0,156,1917 0/0:55,0:55:99:0,159,1951 0/0:53,0:54:99:0,138,1702 0/0:29,0:29:84.25:0,84,996 0/0:121,0:121:99:0,343,4227 0/0:116,0:116:99:0,334,4135 0/0:97,0:97:99:0,277,3399 0/0:100,0:100:99:0,280,3476 0/0:30,0:30:81.25:0,81,986 0/0:33,0:33:93.29:0,93,1131 0/0:29,0:29:81.24:0,81,985 0/0:41,0:41:99:0,120,1446 0/0:39,0:39:99:0,111,1366 0/0:56,0:56:99:0,156,1908 0/0:28,0:28:72.22:0,72,891 0/0:37,0:37:99:0,105,1305 0/0:46,0:46:99:0,129,1583 0/0:54,0:54:99:0,150,1851 0/0:56,0:56:99:0,156,1897 0/0:47,0:47:99:0,132,1598 0/0:40,0:40:99:0,120,1417 0/0:43,0:43:99:0,126,1542 0/0:36,0:36:99:0,105,1263 0/0:46,0:46:99:0,129,1585 17 67149972 . C T 17146.91 . AC=7;AF=0.083;AN=84;BaseQRankSum=11.821;DP=7859;DS;Dels=0.00;FS=4.330;HRun=0;HaplotypeScore=12.4876;InbreedingCoeff=-0.0909;MQ=59.56;MQ0=1;MQRankSum=1.390;QD=12.20;ReadPosRankSum=0.152 GT:AD:DP:GQ:PL 0/0:161,1:163:99:0,386,5063 0/0:152,0:152:99:0,376,4662 0/0:140,0:140:99:0,373,4594 0/1:139,110:249:99:3175,0,4051 0/1:154,94:248:99:2702,0,5182 0/0:249,1:250:99:0,627,8481 0/0:247,0:247:99:0,677,8734 0/0:250,0:250:99:0,656,8721 0/0:159,0:159:99:0,427,5273 0/0:134,0:134:99:0,355,4393 0/0:158,0:158:99:0,421,5119 0/0:151,0:151:99:0,400,4810 0/0:138,0:138:99:0,358,4317 0/0:168,0:169:99:0,445,5482 0/0:247,0:250:99:0,650,7865 0/0:139,0:139:99:0,352,4438 0/0:171,0:171:99:0,430,5342 0/0:155,1:156:99:0,379,4957 0/0:243,0:244:99:0,629,7736 0/0:249,0:250:99:0,623,7771 0/0:249,1:250:99:0,609,7615 0/0:167,0:167:99:0,418,5234 0/0:246,0:247:99:0,671,8670 0/1:136,111:247:99:3068,0,4002 0/0:249,0:250:99:0,668,8639 0/1:143,106:249:99:3088,0,4227 0/1:58,61:119:99:1606,0,1558 0/1:89,67:156:99:1834,0,2431 0/1:77,61:138:99:1673,0,2275 0/0:166,0:167:99:0,439,5352 0/0:151,0:151:99:0,391,4870 0/0:247,0:248:99:0,605,7598 0/0:162,1:164:99:0,412,5249 0/0:161,0:161:99:0,427,5255 0/0:152,0:152:99:0,394,4864 0/0:182,0:182:99:0,460,5772 0/0:234,0:235:99:0,608,7415 0/0:154,0:154:99:0,397,4871 0/0:142,0:142:99:0,373,4585 0/0:171,0:171:99:0,475,5656 0/0:144,0:144:99:0,379,4622 0/0:147,0:147:99:0,415,5069 17 67149973 . G A 11699.89 . AC=4;AF=0.048;AN=84;BaseQRankSum=13.993;DP=7848;DS;Dels=0.00;FS=0.389;HRun=0;HaplotypeScore=12.6319;InbreedingCoeff=-0.0500;MQ=59.56;MQ0=1;MQRankSum=1.583;QD=15.50;ReadPosRankSum=3.462 GT:AD:DP:GQ:PL 0/0:164,0:164:99:0,415,4878 0/0:154,0:154:99:0,394,4625 0/0:140,2:142:99:0,309,4274 0/0:248,0:248:99:0,647,8464 0/1:95,154:249:99:4731,0,2886 0/0:250,0:250:99:0,665,8372 0/0:244,0:244:99:0,656,8275 0/1:136,114:250:99:3276,0,3769 0/0:160,0:160:99:0,430,4975 0/0:136,0:136:99:0,367,4174 0/0:159,0:159:99:0,427,4951 0/0:151,1:152:99:0,379,4662 0/0:136,0:136:99:0,355,4174 0/0:169,0:169:99:0,448,5195 0/0:249,0:249:99:0,659,7559 0/0:139,0:139:99:0,355,4128 0/0:170,0:170:99:0,433,5036 0/0:153,0:153:99:0,412,4723 0/0:239,0:239:99:0,620,7166 0/0:249,0:250:99:0,620,7344 0/0:250,0:250:99:0,614,7235 0/0:168,0:168:99:0,424,4970 0/0:239,0:239:99:0,659,8272 0/0:242,0:242:99:0,623,8273 0/0:240,0:240:99:0,650,8128 0/0:247,1:248:99:0,615,8567 0/1:62,58:120:99:1508,0,1649 0/0:158,0:158:99:0,409,4947 0/1:59,77:136:99:2184,0,1630 0/0:174,0:174:99:0,457,5268 0/0:149,0:149:99:0,394,4592 0/0:247,2:249:99:0,557,7116 0/0:161,0:161:99:0,430,4986 0/0:163,0:163:99:0,424,4908 0/0:152,0:152:99:0,397,4564 0/0:181,0:181:99:0,463,5430 0/0:238,1:239:99:0,585,7054 0/0:151,0:151:99:0,394,4534 0/0:142,0:142:99:0,379,4384 0/0:177,1:178:99:0,490,5570 0/0:144,0:144:99:0,385,4468 0/0:149,1:150:99:0,386,4726 17 67150118 . C T 5052.34 . AC=4;AF=0.048;AN=84;BaseQRankSum=-11.715;DP=4209;DS;Dels=0.00;FS=2.384;HRun=0;HaplotypeScore=1.9751;InbreedingCoeff=-0.0500;MQ=59.45;MQ0=0;MQRankSum=1.032;QD=13.37;ReadPosRankSum=1.866 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,181,2252 0/0:86,0:86:99:0,229,2892 0/0:75,0:75:99:0,217,2681 0/0:196,0:196:99:0,515,6909 0/1:79,82:161:99:2407,0,2403 0/0:183,0:183:99:0,466,6215 0/0:130,0:131:99:0,364,4783 0/1:69,46:115:99:1241,0,2125 0/0:78,0:78:99:0,211,2660 0/0:84,0:84:99:0,208,2652 0/0:69,0:70:99:0,196,2477 0/0:68,0:68:99:0,199,2454 0/0:55,0:55:99:0,156,1931 0/0:89,0:89:99:0,253,3149 0/0:230,0:230:99:0,605,7572 0/0:75,0:75:99:0,211,2663 0/0:86,1:87:99:0,198,2876 0/0:87,0:87:99:0,241,3026 0/0:125,0:125:99:0,328,4051 0/0:120,0:120:99:0,316,4063 0/0:106,0:106:99:0,283,3474 0/0:98,1:99:99:0,230,3278 0/0:157,0:157:99:0,415,5587 0/0:123,0:126:99:0,328,4308 0/0:137,0:137:99:0,376,5035 0/0:127,0:127:99:0,328,4362 0/1:21,22:43:99:642,0,656 0/0:85,0:86:99:0,232,2922 0/1:30,29:59:99:762,0,849 0/0:70,0:71:99:0,199,2456 0/0:88,0:88:99:0,250,3128 0/0:122,0:122:99:0,316,4056 0/0:88,0:88:99:0,241,3018 0/0:81,0:81:99:0,223,2831 0/0:78,0:79:99:0,214,2702 0/0:92,0:92:99:0,250,3101 0/0:88,0:89:99:0,238,2877 0/0:77,0:77:99:0,211,2625 0/0:80,0:81:99:0,217,2734 0/0:75,1:76:99:0,179,2657 0/0:59,0:59:99:0,172,2131 0/0:84,0:84:99:0,229,2878 17 67151207 . C A 548.97 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.840;DP=1349;Dels=0.00;FS=3.056;HRun=0;HaplotypeScore=0.3205;InbreedingCoeff=-0.0244;MQ=59.51;MQ0=0;MQRankSum=-0.063;QD=9.30;ReadPosRankSum=-0.526 GT:AD:DP:GQ:PL 0/0:26,0:26:72.23:0,72,933 0/0:27,0:27:78.24:0,78,965 0/0:22,0:22:66.21:0,66,849 0/0:42,0:42:99:0,126,1717 0/0:45,0:45:99:0,129,1772 0/0:57,0:57:99:0,163,2192 0/0:58,0:58:99:0,163,2227 0/0:56,0:56:99:0,157,2105 0/0:19,0:19:57.18:0,57,730 0/0:20,0:20:54.16:0,54,685 0/0:28,0:28:78.24:0,78,980 0/0:22,0:22:66.21:0,66,847 0/0:22,0:22:66.21:0,66,851 0/0:18,0:18:54.17:0,54,691 0/0:79,0:79:99:0,208,2659 0/0:14,0:14:39.13:0,39,503 0/0:35,0:35:99:0,102,1325 0/1:16,14:30:99:402,0,490 0/1:21,8:29:99:209,0,605 0/0:27,0:27:72.23:0,72,933 0/0:40,1:41:99:0,105,1314 0/0:17,0:17:48.15:0,48,611 0/0:70,0:70:99:0,196,2673 0/0:48,0:48:99:0,141,1891 0/0:49,0:49:99:0,135,1830 0/0:39,0:39:99:0,108,1461 0/0:14,0:14:42.13:0,42,530 0/0:20,0:20:60.19:0,60,761 0/0:23,0:23:66.20:0,66,819 0/0:34,0:34:99:0,99,1272 0/0:16,0:16:42.13:0,42,543 0/0:43,0:43:99:0,105,1384 0/0:20,0:20:60.19:0,60,760 0/0:28,0:28:84.27:0,84,1070 0/0:29,0:29:81.26:0,81,1055 0/0:26,0:26:72.23:0,72,936 0/0:32,0:32:84.27:0,84,1079 0/0:28,0:28:81.24:0,81,1011 0/0:20,0:20:57.18:0,57,732 0/0:23,0:23:63.20:0,63,803 0/0:25,0:25:75.22:0,75,921 0/0:28,0:28:78.25:0,78,1016 17 67267317 . T C 31082.34 . AC=40;AF=0.476;AN=84;BaseQRankSum=20.460;DP=2373;Dels=0.00;FS=0.320;HRun=1;HaplotypeScore=0.9519;InbreedingCoeff=0.0455;MQ=59.39;MQ0=0;MQRankSum=-0.553;QD=19.54;ReadPosRankSum=0.720 GT:AD:DP:GQ:PL 0/1:25,17:42:99:490,0,724 0/0:45,0:45:99:0,123,1476 0/1:12,21:33:99:683,0,282 0/0:89,0:89:99:0,223,2726 0/1:47,63:110:99:1966,0,1180 0/1:45,49:94:99:1317,0,1215 0/1:36,30:66:99:892,0,1039 0/1:39,52:91:99:1529,0,1101 0/1:21,32:53:99:900,0,547 0/1:15,19:34:99:489,0,410 1/1:1,46:47:88.11:1458,88,0 0/0:38,0:38:99:0,108,1310 0/1:24,20:44:99:505,0,699 0/0:41,0:41:99:0,120,1439 0/0:196,0:196:99:0,527,6283 0/1:15,6:21:99:163,0,480 0/0:47,0:47:99:0,120,1472 0/1:24,16:40:99:452,0,659 0/0:60,0:60:99:0,165,1999 0/0:50,0:50:99:0,135,1660 0/1:34,30:65:99:710,0,958 0/0:29,0:29:78.24:0,78,947 0/0:108,0:108:99:0,280,3452 0/1:39,32:71:99:994,0,1034 0/1:42,41:83:99:1229,0,1134 0/1:54,55:109:99:1522,0,1441 1/1:0,23:23:66.21:824,66,0 1/1:0,44:44:99:1488,120,0 1/1:0,52:52:99:1806,147,0 0/1:19,28:47:99:859,0,486 1/1:0,36:36:99:1326,105,0 0/1:23,37:60:99:1046,0,616 0/1:22,20:42:99:588,0,611 1/1:0,40:40:99:1402,114,0 1/1:1,30:31:46:959,46,0 0/1:19,22:41:99:558,0,534 1/1:0,44:44:99:1432,117,0 1/1:0,42:42:99:1380,111,0 1/1:1,43:44:99:1425,117,0 0/0:37,0:37:99:0,105,1279 0/0:42,0:42:99:0,114,1361 0/1:17,25:42:99:689,0,457 17 70943990 . T C 136281.42 . AC=83;AF=0.988;AN=84;BaseQRankSum=6.611;DP=4065;DS;Dels=0.00;FS=5.259;HRun=1;HaplotypeScore=2.1076;InbreedingCoeff=-0.0120;MQ=59.12;MQ0=0;MQRankSum=-1.040;QD=33.53;ReadPosRankSum=-0.685 GT:AD:DP:GQ:PL 1/1:0,93:93:99:3221,262,0 1/1:0,94:94:99:3092,247,0 1/1:0,77:77:99:2586,211,0 1/1:0,155:155:99:5353,403,0 1/1:0,114:114:99:4101,307,0 1/1:0,105:105:99:3671,280,0 1/1:0,96:96:99:3252,250,0 0/1:62,52:114:99:1504,0,1693 1/1:0,75:75:99:2735,217,0 1/1:0,75:75:99:2357,193,0 1/1:0,81:81:99:2790,229,0 1/1:0,71:71:99:2439,196,0 1/1:0,45:45:99:1514,120,0 1/1:0,95:95:99:3210,256,0 1/1:0,226:226:99:7514,608,0 1/1:0,74:74:99:2607,208,0 1/1:0,71:71:99:2499,202,0 1/1:0,77:77:99:2754,220,0 1/1:0,127:129:99:4102,337,0 1/1:0,180:180:99:6126,484,0 1/1:0,129:129:99:4251,349,0 1/1:0,90:90:99:2900,229,0 1/1:0,150:150:99:5158,385,0 1/1:0,101:101:99:3503,265,0 1/1:0,86:86:99:3159,238,0 1/1:0,62:62:99:2345,178,0 1/1:0,65:65:99:2317,187,0 1/1:1,81:82:99:2853,229,0 1/1:0,81:81:99:2624,211,0 1/1:0,83:83:99:2710,214,0 1/1:0,83:83:99:2781,220,0 1/1:0,143:144:99:4735,376,0 1/1:0,82:82:99:2943,232,0 1/1:0,96:96:99:3331,268,0 1/1:0,81:81:99:2762,223,0 1/1:0,63:63:99:2183,178,0 1/1:0,151:152:99:4876,394,0 1/1:0,80:80:99:2542,199,0 1/1:0,81:81:99:2843,229,0 1/1:0,80:80:99:2773,226,0 1/1:0,76:76:99:2723,217,0 1/1:0,70:70:99:2543,202,0 17 70944008 . C T 849.75 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.214;DP=3747;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.7294;InbreedingCoeff=-0.0120;MQ=59.09;MQ0=0;MQRankSum=0.810;QD=12.32;ReadPosRankSum=0.747 GT:AD:DP:GQ:PL 0/0:73,0:73:99:0,202,2525 0/0:90,0:90:99:0,235,2998 0/0:78,0:78:99:0,205,2619 0/0:147,0:147:99:0,370,5009 0/0:104,0:104:99:0,289,3901 0/0:98,0:98:99:0,256,3442 0/0:78,0:78:99:0,214,2879 0/0:99,0:99:99:0,256,3483 0/0:65,0:65:99:0,181,2320 0/0:73,0:73:99:0,205,2597 0/0:85,0:85:99:0,250,3102 0/0:81,0:81:99:0,220,2745 0/0:44,0:44:99:0,126,1595 0/0:86,0:86:99:0,238,2975 0/0:216,0:216:99:0,584,7383 0/0:74,0:74:99:0,217,2726 0/0:66,0:66:99:0,184,2344 0/0:69,0:69:99:0,199,2517 0/0:110,0:111:99:0,301,3748 0/0:174,0:175:99:0,457,5837 0/0:114,0:114:99:0,319,4018 0/0:78,0:78:99:0,208,2612 0/0:135,0:135:99:0,355,4841 0/0:84,0:84:99:0,229,3036 0/0:69,0:69:99:0,178,2428 0/0:56,0:56:99:0,156,2069 0/0:59,0:59:99:0,166,2103 0/0:79,0:79:99:0,208,2637 0/0:72,0:72:99:0,196,2481 0/0:78,0:78:99:0,214,2646 0/0:71,0:71:99:0,196,2513 0/0:129,0:129:99:0,349,4443 0/0:84,0:84:99:0,235,2953 0/0:82,0:82:99:0,226,2840 0/0:71,0:71:99:0,199,2467 0/1:35,34:69:99:896,0,1028 0/0:156,0:157:99:0,397,5062 0/0:77,0:77:99:0,208,2586 0/0:76,0:76:99:0,211,2681 0/0:66,0:66:99:0,184,2346 0/0:66,0:66:99:0,181,2274 0/0:63,0:63:99:0,175,2230 17 71084844 . C T 162.83 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.970;DP=973;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.6340;InbreedingCoeff=-0.0121;MQ=59.14;MQ0=0;MQRankSum=-0.105;QD=8.14;ReadPosRankSum=-0.017 GT:AD:DP:GQ:PL 0/1:12,8:20:99:209,0,349 0/0:14,0:14:42.13:0,42,529 0/0:17,0:17:48.15:0,48,614 0/0:31,0:31:81.27:0,81,1095 0/0:27,0:27:69.23:0,69,942 0/0:14,0:14:33.11:0,33,466 0/0:16,0:16:33.11:0,33,466 0/0:19,0:19:51.16:0,51,679 0/0:15,0:15:42.13:0,42,509 0/0:21,0:21:51.16:0,51,665 0/0:24,0:24:63.19:0,63,797 0/0:17,0:17:45.14:0,45,568 0/0:14,0:14:36.12:0,36,474 0/0:24,0:24:57.18:0,57,724 0/0:88,0:88:99:0,214,2733 0/0:18,0:18:54.17:0,54,674 0/0:29,0:29:81.26:0,81,1044 0/0:23,0:23:66.20:0,66,813 0/0:34,0:34:99:0,102,1246 0/0:38,0:38:96.30:0,96,1239 0/0:31,0:31:84.27:0,84,1067 0/0:27,0:27:75.23:0,75,936 0/0:35,0:35:87.28:0,87,1185 0/0:17,0:17:45.15:0,45,619 0/0:14,0:14:36.09:0,36,457 0/0:18,0:18:39.12:0,39,512 0/0:13,0:13:39.13:0,39,502 0/0:26,0:26:69.22:0,69,886 0/0:24,0:24:63.19:0,63,804 0/0:25,0:25:63.18:0,63,800 0/0:14,0:14:42.13:0,42,529 0/0:33,0:33:93.28:0,93,1177 0/0:28,0:28:72.23:0,72,942 0/0:17,0:17:48.14:0,48,597 0/0:14,0:14:39.12:0,39,493 0/0:25,0:25:75.21:0,75,930 0/0:22,0:22:60.19:0,60,752 0/0:15,0:15:45.13:0,45,536 0/0:12,0:12:33.10:0,33,420 0/0:20,0:21:54.17:0,54,682 0/0:18,0:18:54.17:0,54,680 0/0:21,0:21:54.17:0,54,696 17 71193206 . A C 468.86 . AC=11;AF=0.131;AN=84;BaseQRankSum=-18.516;DP=2063;Dels=0.00;FS=792.530;HRun=2;HaplotypeScore=1.2121;InbreedingCoeff=-0.1664;MQ=58.72;MQ0=0;MQRankSum=-0.616;QD=0.78;ReadPosRankSum=-12.527 GT:AD:DP:GQ:PL 0/1:33,21:54:78.85:79,0,982 0/0:21,11:32:32.58:0,33,668 0/0:20,7:27:60.17:0,60,711 0/0:54,35:89:71.70:0,72,1866 0/1:51,44:95:98.97:99,0,1623 0/0:35,24:59:42.63:0,43,1258 0/1:37,20:57:75.36:75,0,1169 0/0:38,16:54:99:0,108,1377 0/0:37,20:57:75.03:0,75,1314 0/0:16,14:30:47:0,47,536 0/0:17,13:30:7.34:0,7,473 0/0:28,12:40:3.31:0,3,854 0/1:22,18:40:43.13:43,0,703 0/0:29,17:46:53.44:0,53,914 0/1:78,34:112:86.14:86,0,2423 0/0:27,16:43:15.46:0,15,881 0/0:21,12:33:32.64:0,33,717 0/0:22,17:39:10.68:0,11,680 0/1:27,22:49:12.45:12,0,804 0/0:40,24:64:70.99:0,71,1348 0/1:29,17:46:21.21:21,0,910 0/0:17,11:28:25.48:0,25,570 0/0:65,36:101:52.96:0,53,2069 0/0:37,15:52:99:0,108,1388 0/0:50,30:80:93.39:0,93,1844 0/0:39,22:61:68.04:0,68,1353 0/1:22,10:32:18.62:19,0,710 0/0:32,16:48:35.71:0,36,1101 0/1:17,7:24:12.44:12,0,566 0/0:18,13:31:0.76:0,1,548 0/0:21,9:30:31.85:0,32,736 0/0:32,16:48:63.57:0,64,1021 0/0:25,23:48:51.02:0,51,825 0/0:34,15:49:68.52:0,69,1118 0/0:26,15:41:20.23:0,20,908 0/0:27,13:40:52.47:0,52,920 0/1:34,12:46:62.22:62,0,988 0/0:25,11:36:50.55:0,51,856 0/0:31,13:44:39.35:0,39,1026 0/0:27,15:42:16.69:0,17,886 0/0:22,18:40:13.88:0,14,710 0/1:27,19:46:95.43:95,0,841 17 71346513 . C T 1572.95 . 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C T 526.99 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.330;DP=1566;Dels=0.00;FS=5.113;HRun=0;HaplotypeScore=0.8786;InbreedingCoeff=-0.0120;MQ=59.18;MQ0=0;MQRankSum=-0.394;QD=10.54;ReadPosRankSum=1.409 GT:AD:DP:GQ:PL 0/0:32,0:32:81.22:0,81,946 0/0:29,0:29:69.20:0,69,836 0/0:23,0:23:63.16:0,63,705 0/0:64,0:64:99:0,162,2006 0/0:73,0:73:99:0,184,2307 0/0:64,0:65:99:0,156,1991 0/0:33,0:33:78.23:0,78,996 0/1:30,19:50:99:573,0,808 0/0:34,0:34:90.24:0,90,1029 0/0:36,0:36:93.25:0,93,1060 0/0:28,0:28:75.19:0,75,851 0/0:21,0:21:54.14:0,54,619 0/0:28,0:28:72.20:0,72,836 0/0:17,0:17:48.12:0,48,532 0/0:77,0:77:99:0,205,2322 0/0:26,0:26:72.17:0,72,777 0/0:23,0:23:66.17:0,66,744 0/0:34,0:34:99:0,99,1090 0/0:48,0:48:99:0,132,1491 0/0:63,0:63:99:0,156,1850 0/0:64,0:64:99:0,162,1904 0/0:37,0:37:90.23:0,90,1054 0/0:79,1:80:99:0,184,2329 0/0:49,0:49:99:0,117,1481 0/0:51,0:51:99:0,123,1538 0/0:41,0:41:96.30:0,96,1230 0/0:25,0:25:69.17:0,69,763 0/0:26,0:26:66.17:0,66,750 0/0:16,0:16:42.11:0,42,482 0/0:22,0:22:60.17:0,60,703 0/0:32,0:32:87.21:0,87,990 0/0:51,0:51:99:0,132,1555 0/0:38,0:38:99:0,102,1163 0/0:17,0:17:51.11:0,51,555 0/0:18,0:18:45.11:0,45,508 0/0:24,0:24:66.18:0,66,749 0/0:45,0:45:99:0,111,1259 0/0:36,0:36:78.21:0,78,953 0/0:24,0:24:66.16:0,66,741 0/0:21,0:21:63.17:0,63,707 0/0:22,0:22:63.17:0,63,730 0/0:23,0:23:60.16:0,60,682 17 71377075 . G A 43.06 . 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C A 5908.81 . 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G A 190.09 . 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G A 16665.96 . AC=24;AF=0.286;AN=84;BaseQRankSum=5.969;DP=2127;Dels=0.00;FS=3.721;HRun=0;HaplotypeScore=1.3552;InbreedingCoeff=-0.1667;MQ=59.19;MQ0=0;MQRankSum=0.215;QD=16.07;ReadPosRankSum=0.556 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,120,1357 0/0:52,0:52:99:0,153,1711 0/0:34,0:34:96.22:0,96,1088 0/1:45,53:98:99:1568,0,1311 0/0:96,0:96:99:0,283,3477 0/1:33,43:76:99:1331,0,952 0/0:64,0:64:99:0,184,2204 0/1:33,39:72:99:1172,0,905 1/1:0,34:34:99:1214,102,0 0/1:14,14:28:99:419,0,352 0/1:30,23:53:99:631,0,830 0/1:26,14:40:99:358,0,739 0/1:18,11:29:99:299,0,512 0/0:41,0:41:99:0,123,1397 0/0:110,0:110:99:0,313,3507 0/1:13,18:31:99:496,0,347 0/0:44,0:44:99:0,111,1243 0/0:35,0:35:99:0,102,1148 0/0:65,0:65:99:0,193,2211 0/0:73,0:73:99:0,202,2351 0/0:62,0:65:99:0,180,1998 0/0:43,0:43:99:0,117,1315 0/1:48,56:104:99:1569,0,1463 0/0:50,0:50:99:0,141,1745 0/1:29,32:61:99:878,0,876 0/0:47,0:47:99:0,132,1673 0/1:15,10:25:99:257,0,364 0/1:17,15:32:99:398,0,400 0/0:35,0:35:96.25:0,96,1133 0/1:11,21:32:99:633,0,274 0/1:13,10:23:99:268,0,353 0/0:52,0:52:99:0,147,1664 0/0:65,0:65:99:0,177,1981 0/1:22,24:46:99:680,0,580 0/0:49,0:49:99:0,141,1627 0/1:18,14:33:99:400,0,494 1/1:1,65:67:99:2119,175,0 0/1:14,22:36:99:652,0,324 0/1:21,19:40:99:525,0,582 0/1:22,17:39:99:505,0,530 0/0:27,0:27:78.20:0,78,872 0/1:26,12:38:99:294,0,766 17 72249229 . C A 32324.30 . 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G A 1245.19 . 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C A 756.09 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.950;DP=1234;Dels=0.00;FS=1.689;HRun=0;HaplotypeScore=0.6592;InbreedingCoeff=-0.0246;MQ=58.83;MQ0=0;MQRankSum=-0.755;QD=14.83;ReadPosRankSum=-1.231 GT:AD:DP:GQ:PL 0/1:14,12:26:99:321,0,359 0/1:9,16:25:99:497,0,229 0/0:23,0:23:69.17:0,69,762 0/0:56,0:56:99:0,153,1862 0/0:65,1:66:99:0,138,1996 0/0:30,0:30:78.21:0,78,954 0/0:34,0:34:96.26:0,96,1140 0/0:30,0:30:84.24:0,84,1021 0/0:19,0:19:54.13:0,54,592 0/0:21,0:21:57.16:0,57,669 0/0:20,0:20:51.13:0,51,594 0/0:11,0:11:33.07:0,33,351 0/0:19,0:19:54.16:0,54,646 0/0:16,0:16:42.12:0,42,495 0/0:84,0:84:99:0,220,2463 0/0:18,1:19:19.36:0,19,579 0/0:23,0:23:66.16:0,66,720 0/0:14,0:14:42.10:0,42,461 0/0:28,0:28:78.19:0,78,846 0/0:59,0:59:99:0,159,1802 0/0:45,0:45:99:0,120,1323 0/0:30,0:30:84.21:0,84,939 0/0:57,0:57:99:0,153,1898 0/0:27,0:27:75.19:0,75,874 0/0:40,0:41:99:0,114,1402 0/0:30,0:30:75.22:0,75,933 0/0:14,0:14:36.08:0,36,408 0/0:23,0:23:66.17:0,66,759 0/0:13,0:13:36.09:0,36,395 0/0:22,0:22:54.13:0,54,625 0/0:22,0:22:66.17:0,66,737 0/0:51,0:51:99:0,138,1588 0/0:19,0:19:57.14:0,57,637 0/0:22,0:22:57.15:0,57,641 0/0:22,0:22:66.16:0,66,720 0/0:11,0:11:30.09:0,30,364 0/0:51,0:51:99:0,135,1574 0/0:31,0:31:90.23:0,90,1001 0/0:19,0:19:54.11:0,54,587 0/0:17,0:17:51.13:0,51,559 0/0:15,0:15:45.13:0,45,512 0/0:29,0:29:81.20:0,81,897 17 72308319 . G A 29976.11 . AC=74;AF=0.881;AN=84;BaseQRankSum=-5.402;DP=1028;Dels=0.00;FS=0.463;HRun=0;HaplotypeScore=0.4706;InbreedingCoeff=-0.1352;MQ=59.01;MQ0=0;MQRankSum=-0.022;QD=29.16;ReadPosRankSum=0.495 GT:AD:DP:GQ:PL 0/1:8,9:17:99:238,0,235 0/1:12,9:21:99:232,0,355 1/1:0,17:17:48.13:563,48,0 1/1:0,42:42:99:1389,114,0 1/1:0,44:44:99:1413,117,0 0/1:10,9:19:99:237,0,275 0/1:14,13:27:99:300,0,479 1/1:0,20:20:60.15:693,60,0 1/1:0,17:17:48.15:578,48,0 1/1:0,18:18:48.14:569,48,0 1/1:0,11:11:33.10:386,33,0 0/1:7,7:14:99:207,0,219 1/1:0,18:18:48.13:560,48,0 0/1:7,8:15:99:214,0,183 1/1:1,73:74:99:2426,205,0 0/1:13,10:23:99:261,0,303 1/1:0,17:17:48.15:572,48,0 0/1:9,7:16:99:201,0,272 0/1:10,17:27:99:526,0,291 1/1:0,51:51:99:1659,138,0 1/1:0,30:30:87.26:1051,87,0 1/1:0,24:24:69.20:814,69,0 1/1:0,45:45:99:1424,120,0 1/1:0,21:21:51.16:646,51,0 1/1:0,27:27:72.21:874,72,0 1/1:0,21:21:54.17:675,54,0 1/1:0,14:14:42.12:495,42,0 1/1:0,22:22:63.19:752,63,0 1/1:0,13:13:33.09:381,33,0 1/1:0,16:16:42.13:509,42,0 1/1:0,20:20:60.18:723,60,0 1/1:0,52:52:99:1618,132,0 1/1:0,14:14:42.12:494,42,0 1/1:0,18:18:54.16:642,54,0 1/1:0,19:19:51.14:599,51,0 0/1:4,3:7:88.88:89,0,125 1/1:0,48:48:99:1486,123,0 1/1:0,32:32:84.25:997,84,0 1/1:0,15:15:42.12:503,42,0 1/1:0,17:17:48.12:543,48,0 1/1:0,17:17:42.13:517,42,0 1/1:0,28:28:78.21:923,78,0 17 72345465 . G A 4.16 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.045;DP=611;Dels=0.00;FS=11.399;HRun=0;HaplotypeScore=0.8170;InbreedingCoeff=-0.0184;MQ=58.87;MQ0=1;MQRankSum=0.770;QD=0.52;ReadPosRankSum=1.401 GT:AD:DP:GQ:PL 0/0:9,0:9:24.06:0,24,277 0/0:10,0:10:27.07:0,27,320 0/0:15,0:15:42.11:0,42,497 0/0:40,0:40:99:0,111,1319 0/0:24,0:24:57.12:0,57,649 0/0:25,0:25:63.17:0,63,747 0/0:14,0:14:42.12:0,42,489 0/0:22,0:22:54.14:0,54,650 0/0:11,0:11:33.10:0,33,400 0/0:9,0:9:24.06:0,24,274 0/0:8,0:8:24.06:0,24,269 0/1:6,2:8:48.19:48,0,183 0/0:1,0:1:3.01:0,3,39 0/0:10,0:10:30.03:0,30,301 0/0:35,0:35:78.19:0,78,877 0/0:8,0:8:24.05:0,24,263 0/0:6,0:6:18.05:0,18,215 0/0:10,0:10:30.08:0,30,354 0/0:14,0:15:33.09:0,33,386 0/0:21,0:21:60.09:0,60,654 0/0:12,0:13:33.09:0,33,384 0/0:12,0:12:27.07:0,27,313 0/0:29,0:29:84.21:0,84,992 0/0:17,0:17:33.09:0,33,399 0/0:24,0:24:66.19:0,66,811 0/0:16,0:16:42.13:0,42,525 0/0:10,0:10:27.08:0,27,332 0/0:15,0:15:42.11:0,42,469 0/0:14,0:14:36.10:0,36,419 0/0:7,0:7:15.05:0,15,184 0/0:15,0:15:39.10:0,39,447 0/0:26,0:26:78.23:0,78,940 0/0:14,0:14:33.09:0,33,380 0/0:17,0:17:45.13:0,45,532 0/0:10,0:10:30.09:0,30,364 0/0:9,0:9:27.09:0,27,339 0/0:11,0:12:27.07:0,27,313 0/0:9,0:9:27.08:0,27,316 0/0:3,0:3:9.02:0,9,106 0/0:15,0:15:42.12:0,42,488 0/0:13,0:13:33.10:0,33,390 0/0:10,0:10:30.08:0,30,344 17 72366695 . C A 43677.59 . AC=84;AF=1.000;AN=84;BaseQRankSum=2.419;DP=1296;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.8017;InbreedingCoeff=-0.0000;MQ=58.98;MQ0=0;MQRankSum=1.028;QD=33.70;ReadPosRankSum=1.718 GT:AD:DP:GQ:PL 1/1:0,25:25:66.20:794,66,0 1/1:0,25:25:72.19:840,72,0 1/1:0,24:24:63.20:776,63,0 1/1:0,63:63:99:2148,178,0 1/1:0,42:42:99:1417,117,0 1/1:0,48:48:99:1594,126,0 1/1:0,29:29:84.26:1037,84,0 1/1:0,41:41:99:1471,120,0 1/1:0,18:18:51.16:618,51,0 1/1:0,22:22:60.18:727,60,0 1/1:0,23:23:69.20:807,69,0 1/1:0,10:10:30.08:344,30,0 1/1:0,21:21:63.19:759,63,0 1/1:0,28:28:81.23:957,81,0 1/1:1,73:74:99:2262,187,0 1/1:0,25:25:72.22:873,72,0 1/1:0,30:30:87.27:1060,87,0 1/1:0,22:22:63.18:747,63,0 1/1:0,54:54:99:1661,141,0 1/1:2,47:49:99:1645,138,0 1/1:0,41:41:99:1334,111,0 1/1:0,29:29:81.24:988,81,0 1/1:0,68:68:99:2292,190,0 1/1:1,27:28:72.20:864,72,0 1/1:0,41:41:99:1373,111,0 1/1:0,33:33:99:1201,99,0 1/1:0,21:21:51.16:639,51,0 1/1:0,14:14:42.12:497,42,0 1/1:0,11:11:33.10:410,33,0 1/1:0,23:23:63.19:772,63,0 1/1:0,16:16:48.14:572,48,0 1/1:0,45:45:99:1441,117,0 1/1:0,36:36:99:1225,102,0 1/1:0,21:21:63.20:767,63,0 1/1:0,21:21:60.14:695,60,0 1/1:0,28:28:84.25:1008,84,0 1/1:0,34:34:96.29:1157,96,0 1/1:0,30:30:87.23:1018,87,0 1/1:0,18:18:51.15:610,51,0 1/1:0,14:14:42.12:487,42,0 1/1:0,25:25:72.22:883,72,0 1/1:0,26:26:75.23:905,75,0 17 72366769 . C G 22.67 . AC=6;AF=0.071;AN=84;BaseQRankSum=-12.435;DP=1958;Dels=0.00;FS=478.923;HRun=2;HaplotypeScore=1.3710;InbreedingCoeff=-0.0826;MQ=58.66;MQ0=0;MQRankSum=-0.839;QD=0.10;ReadPosRankSum=-13.504 GT:AD:DP:GQ:PL 0/0:26,6:32:23.79:0,24,661 0/0:22,11:33:12.46:0,12,592 0/0:28,7:35:39.86:0,40,711 0/0:62,42:104:64.01:0,64,1532 0/0:77,29:107:55.26:0,55,1495 0/0:55,18:73:60.40:0,60,1133 0/0:39,12:51:17.47:0,17,901 0/0:32,13:45:63.18:0,63,744 0/0:25,5:30:54.13:0,54,596 0/0:15,6:21:13.41:0,13,370 0/0:31,7:39:21.65:0,22,717 0/0:23,7:30:18.62:0,19,482 0/0:19,6:25:41.48:0,41,445 0/1:23,11:34:24.82:25,0,484 0/0:76,29:105:77.09:0,77,1866 0/1:21,7:28:27.66:28,0,490 0/0:29,7:36:72.14:0,72,759 0/0:24,6:30:26.68:0,27,557 0/0:48,17:65:33.36:0,33,1187 0/0:67,18:85:99:0,106,1495 0/0:35,11:46:5.33:0,5,904 0/0:43,8:51:98.21:0,98,1020 0/0:83,36:119:90.34:0,90,1857 0/1:34,17:51:27.53:28,0,545 0/0:46,19:66:89.46:0,89,1170 0/0:46,21:67:24.57:0,25,927 0/0:18,4:23:45.10:0,45,480 0/0:23,10:33:55.41:0,55,582 0/1:18,6:24:14.25:14,0,309 0/0:23,12:35:24.41:0,24,459 0/0:19,7:26:18.93:0,19,389 0/0:51,6:57:99:0,107,1176 0/0:34,7:41:65.55:0,66,947 0/0:27,8:35:25.77:0,26,652 0/0:21,9:30:48.09:0,48,508 0/1:27,16:43:15.78:16,0,530 0/0:46,14:60:89.47:0,89,1149 0/0:25,4:29:8.64:0,9,401 0/0:17,5:22:30.55:0,31,325 0/0:20,7:27:48.57:0,49,513 0/0:19,10:29:48.12:0,48,513 0/1:28,8:36:14.68:15,0,604 17 72539068 . C T 4239.50 . AC=4;AF=0.048;AN=84;BaseQRankSum=-0.323;DP=2056;Dels=0.00;FS=5.794;HRun=2;HaplotypeScore=1.4954;InbreedingCoeff=-0.0500;MQ=59.20;MQ0=0;MQRankSum=1.469;QD=13.04;ReadPosRankSum=0.199 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,102,1222 0/0:35,0:35:99:0,105,1253 0/0:21,0:21:63.16:0,63,699 0/0:145,0:145:99:0,385,5017 0/0:115,0:115:99:0,322,4134 0/1:47,40:87:99:1234,0,1290 0/1:36,33:69:99:991,0,1049 0/0:71,0:71:99:0,196,2488 0/0:22,0:22:63.17:0,63,764 0/0:28,0:28:78.22:0,78,912 0/0:28,0:29:81.24:0,81,976 0/0:26,0:26:78.22:0,78,939 0/0:22,0:22:66.19:0,66,770 0/0:30,0:30:84.24:0,84,1004 0/0:85,0:85:99:0,235,2865 0/0:36,0:36:99:0,105,1254 0/0:30,0:31:87.26:0,87,1045 0/0:30,0:30:84.24:0,84,1010 0/0:66,0:67:99:0,174,2076 0/0:59,0:59:99:0,159,1891 0/0:62,0:62:99:0,165,1929 0/0:46,0:46:99:0,120,1384 0/0:142,0:142:99:0,388,5061 0/1:36,32:68:99:956,0,1081 0/1:61,40:101:99:1058,0,1919 0/0:65,0:65:99:0,187,2360 0/0:32,0:32:84.24:0,84,1009 0/0:27,0:27:75.21:0,75,917 0/0:33,0:33:90.27:0,90,1111 0/0:30,0:30:84.24:0,84,1011 0/0:35,0:35:99:0,102,1195 0/0:44,0:44:99:0,114,1398 0/0:46,0:46:99:0,132,1579 0/0:40,0:40:99:0,117,1430 0/0:28,0:28:81.24:0,81,982 0/0:22,0:22:66.17:0,66,772 0/0:57,0:57:99:0,147,1787 0/0:30,0:30:87.25:0,87,1023 0/0:23,0:24:63.17:0,63,757 0/0:30,0:30:87.25:0,87,1051 0/0:20,0:20:54.15:0,54,637 0/0:29,0:29:81.21:0,81,972 17 72578386 . G T 848.50 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.319;DP=2360;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.6741;InbreedingCoeff=-0.0120;MQ=59.29;MQ0=0;MQRankSum=0.607;QD=15.15;ReadPosRankSum=1.107 GT:AD:DP:GQ:PL 0/0:30,0:30:87.27:0,87,1075 0/0:38,1:39:81.72:0,82,1348 0/0:41,0:41:99:0,108,1349 0/0:163,0:163:99:0,421,5665 0/0:107,0:107:99:0,280,3848 0/0:105,0:105:99:0,262,3532 0/0:77,0:77:99:0,205,2764 0/0:84,0:84:99:0,217,3006 0/0:34,0:34:90.29:0,90,1169 0/0:35,0:35:96.29:0,96,1213 0/0:28,0:28:78.25:0,78,1005 0/0:38,0:38:99:0,105,1315 0/0:21,0:21:57.17:0,57,720 0/0:38,0:38:99:0,102,1307 0/0:149,0:149:99:0,418,5292 0/0:30,0:30:84.27:0,84,1072 0/0:31,0:31:90.28:0,90,1131 0/0:35,0:35:96.31:0,96,1243 0/0:70,0:70:99:0,190,2400 0/0:85,0:85:99:0,214,2771 0/0:75,0:75:99:0,196,2499 0/0:46,0:46:99:0,126,1588 0/0:153,0:154:99:0,391,5328 0/0:72,0:72:99:0,190,2611 0/0:81,0:81:99:0,220,2979 0/1:23,33:56:99:895,0,651 0/0:33,0:33:87.28:0,87,1116 0/0:40,0:40:99:0,114,1428 0/0:24,0:24:63.20:0,63,794 0/0:36,0:36:93.27:0,93,1161 0/0:30,0:30:81.25:0,81,1034 0/0:66,0:66:99:0,169,2187 0/0:66,0:66:99:0,172,2184 0/0:28,0:28:78.24:0,78,988 0/0:37,0:37:96.31:0,96,1253 0/0:49,0:49:99:0,129,1625 0/0:59,0:59:99:0,165,2052 0/0:38,0:39:99:0,105,1345 0/0:25,0:25:63.20:0,63,822 0/0:33,0:33:93.27:0,93,1134 0/0:30,0:30:90.27:0,90,1118 0/0:41,0:41:99:0,111,1443 17 72767925 . G A 30.27 . 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G C 420.66 . 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GTGAAATTACAGAGACC G 770.81 . 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G A 28526.19 . 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C T 2174.98 . 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C T 1197.79 . AC=3;AF=0.036;AN=84;BaseQRankSum=3.423;DP=1570;Dels=0.00;FS=7.144;HRun=0;HaplotypeScore=0.7085;InbreedingCoeff=-0.0370;MQ=59.08;MQ0=0;MQRankSum=-1.139;QD=14.09;ReadPosRankSum=0.760 GT:AD:DP:GQ:PL 0/0:26,0:26:72.20:0,72,837 0/0:21,0:21:57.14:0,57,629 0/1:14,11:25:99:271,0,389 0/0:69,0:69:99:0,208,2473 0/0:54,0:54:99:0,162,1969 0/0:56,0:56:99:0,165,1987 0/1:21,21:42:99:641,0,633 0/0:39,0:39:99:0,114,1342 0/0:31,0:31:93.22:0,93,1016 0/1:6,12:18:99:361,0,148 0/0:28,0:28:84.22:0,84,940 0/0:21,0:21:63.16:0,63,688 0/0:23,0:23:63.17:0,63,708 0/0:35,0:35:99:0,99,1101 0/0:110,0:111:99:0,325,3574 0/0:27,0:27:78.19:0,78,843 0/0:30,0:30:87.24:0,87,985 0/0:26,0:26:78.19:0,78,866 0/0:43,0:43:99:0,123,1365 0/0:56,0:56:99:0,165,1854 0/0:51,0:51:99:0,138,1519 0/0:32,0:32:96.25:0,96,1075 0/0:82,0:82:99:0,232,2801 0/0:50,0:50:99:0,147,1759 0/0:58,0:58:99:0,165,1983 0/0:48,0:48:99:0,144,1725 0/0:27,0:27:81.20:0,81,890 0/0:34,0:34:99:0,99,1117 0/0:22,0:23:66.19:0,66,766 0/0:34,0:34:99:0,102,1161 0/0:20,0:20:60.15:0,60,649 0/0:37,0:37:99:0,111,1258 0/0:33,0:33:93.26:0,93,1076 0/0:24,0:24:72.21:0,72,835 0/0:22,0:22:66.19:0,66,757 0/0:27,0:27:78.17:0,78,854 0/0:38,0:38:99:0,108,1197 0/0:26,0:26:75.21:0,75,854 0/0:25,0:25:75.20:0,75,827 0/0:36,0:36:99:0,102,1126 0/0:26,0:26:78.20:0,78,871 0/0:36,0:36:99:0,108,1209 17 73127348 . G A 232.26 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.542;DP=1400;Dels=0.00;FS=1.333;HRun=0;HaplotypeScore=1.5096;InbreedingCoeff=-0.0121;MQ=59.01;MQ0=0;MQRankSum=-0.202;QD=10.10;ReadPosRankSum=-0.158 GT:AD:DP:GQ:PL 0/0:24,0:24:57.17:0,57,708 0/0:21,0:21:54.16:0,54,661 0/0:17,0:17:45.14:0,45,568 0/0:104,0:104:99:0,268,3498 0/0:75,0:75:99:0,202,2652 0/0:59,0:59:99:0,141,1892 0/0:37,0:37:96.29:0,96,1245 0/0:52,0:52:99:0,135,1781 0/0:18,0:18:51.14:0,51,593 0/0:19,0:19:45.14:0,45,560 0/0:30,0:30:81.21:0,81,955 0/0:23,0:23:54.16:0,54,667 0/0:18,0:18:48.13:0,48,586 0/0:23,0:23:60.18:0,60,727 0/0:81,0:81:99:0,193,2387 0/1:12,11:23:99:278,0,317 0/0:20,0:20:57.14:0,57,660 0/0:18,0:18:51.15:0,51,606 0/0:26,0:26:66.18:0,66,766 0/0:47,0:47:99:0,123,1507 0/0:44,0:45:99:0,108,1334 0/0:37,0:37:99:0,99,1193 0/0:79,0:79:99:0,196,2566 0/0:46,0:46:99:0,108,1452 0/0:55,0:55:99:0,135,1814 0/0:39,0:39:99:0,105,1386 0/0:14,0:14:36.09:0,36,432 0/0:20,0:20:45.13:0,45,551 0/0:26,0:26:63.19:0,63,780 0/0:15,0:15:45.13:0,45,526 0/0:27,0:27:78.23:0,78,963 0/0:44,0:44:99:0,117,1436 0/0:27,0:27:75.22:0,75,895 0/0:14,0:14:36.11:0,36,448 0/0:12,0:12:33.10:0,33,412 0/0:27,0:27:63.20:0,63,803 0/0:35,0:35:81.21:0,81,939 0/0:21,0:21:54.15:0,54,639 0/0:29,0:29:78.22:0,78,941 0/0:18,0:18:51.12:0,51,595 0/0:18,0:18:54.15:0,54,631 0/0:17,0:17:42.12:0,42,506 17 73127683 . T C 1898.37 . AC=47;AF=0.734;AN=64;BaseQRankSum=2.213;DP=90;Dels=0.00;FS=2.069;HRun=0;HaplotypeScore=0.0613;InbreedingCoeff=0.0514;MQ=59.07;MQ0=0;MQRankSum=-0.720;QD=23.73;ReadPosRankSum=0.199 GT:AD:DP:GQ:PL 1/1:0,4:4:9.03:120,9,0 0/0:2,0:2:6.02:0,6,69 0/1:1,2:3:26.23:61,0,26 ./. ./. ./. ./. 0/1:1,1:2:30.96:36,0,31 0/0:1,0:1:3.01:0,3,35 0/1:4,2:6:54.12:54,0,102 1/1:0,1:1:3.01:38,3,0 ./. 1/1:0,1:1:3.01:39,3,0 1/1:0,3:3:9.03:103,9,0 1/1:0,2:2:6.01:61,6,0 1/1:0,3:3:9.03:112,9,0 1/1:0,1:1:3.01:38,3,0 1/1:0,2:2:3.01:39,3,0 ./. 1/1:0,3:3:9.03:116,9,0 0/1:4,1:5:18.39:18,0,136 0/0:4,0:4:9.02:0,9,98 0/0:3,0:3:9.03:0,9,108 1/1:0,2:2:6.02:80,6,0 1/1:0,3:3:6.02:86,6,0 1/1:0,2:2:3.01:41,3,0 0/1:0,1:1:1.76:35,3,0 0/1:2,1:3:29.55:30,0,66 1/1:0,2:2:6.02:72,6,0 0/1:1,4:5:20.21:136,0,20 0/1:3,2:5:35.73:36,0,71 1/1:0,4:4:12.04:143,12,0 1/1:0,3:3:9.03:109,9,0 ./. 1/1:0,2:2:6.02:73,6,0 1/1:0,4:4:12.04:147,12,0 1/1:0,1:1:3.01:37,3,0 ./. ./. 0/1:2,1:3:29.55:30,0,61 ./. 1/1:0,4:4:12.04:150,12,0 17 73144635 . G A 1332.60 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.364;DP=2273;Dels=0.00;FS=10.532;HRun=0;HaplotypeScore=1.2258;InbreedingCoeff=-0.0244;MQ=59.10;MQ0=0;MQRankSum=-0.343;QD=14.03;ReadPosRankSum=0.472 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,138,1732 0/1:27,25:52:99:710,0,811 0/1:19,24:43:99:685,0,578 0/0:65,1:66:99:0,136,2186 0/0:75,0:75:99:0,202,2750 0/0:61,0:61:99:0,169,2276 0/0:49,0:49:99:0,129,1749 0/0:61,0:61:99:0,169,2275 0/0:45,0:45:99:0,132,1663 0/0:51,0:51:99:0,141,1782 0/0:47,0:47:99:0,123,1581 0/0:47,0:47:99:0,123,1574 0/0:39,0:39:99:0,105,1340 0/0:47,0:47:99:0,126,1580 0/0:161,2:163:99:0,383,5399 0/0:45,0:45:99:0,126,1571 0/0:42,0:42:99:0,120,1513 0/0:42,0:42:99:0,111,1367 0/0:58,0:58:99:0,156,1965 0/0:63,0:63:99:0,169,2160 0/0:93,0:93:99:0,244,3066 0/0:35,0:35:99:0,102,1267 0/0:52,0:53:99:0,147,1998 0/0:48,0:48:99:0,129,1742 0/0:59,0:59:99:0,153,2051 0/0:51,0:51:99:0,138,1817 0/0:37,0:37:99:0,108,1379 0/0:58,0:58:99:0,159,1978 0/0:46,0:46:99:0,126,1607 0/0:42,0:42:99:0,114,1443 0/0:37,0:37:99:0,102,1305 0/0:79,0:79:99:0,205,2605 0/0:40,0:40:99:0,117,1476 0/0:58,0:58:99:0,153,1954 0/0:50,0:50:99:0,141,1787 0/0:47,0:47:99:0,135,1706 0/0:64,0:64:99:0,169,2141 0/0:42,0:43:99:0,111,1413 0/0:44,0:44:99:0,129,1625 0/0:48,0:48:99:0,141,1747 0/0:39,0:39:99:0,108,1351 0/0:57,0:57:99:0,144,1840 17 73235124 . G A 18.73 . 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C T 19018.25 . AC=76;AF=0.905;AN=84;BaseQRankSum=-6.245;DP=709;Dels=0.00;FS=10.157;HRun=1;HaplotypeScore=1.0101;InbreedingCoeff=-0.1061;MQ=58.14;MQ0=0;MQRankSum=0.434;QD=26.82;ReadPosRankSum=1.640 GT:AD:DP:GQ:PL 1/1:0,15:15:39.08:449,39,0 0/1:6,3:9:77.58:78,0,109 0/1:7,5:13:99:136,0,223 1/1:1,50:51:99:1429,129,0 1/1:0,37:37:99:1132,102,0 0/1:14,7:21:99:177,0,418 1/1:0,23:23:57.11:638,57,0 0/1:8,14:22:99:361,0,186 1/1:0,15:15:45.12:502,45,0 1/1:0,14:14:36.09:397,36,0 1/1:0,12:13:33.09:386,33,0 1/1:0,15:15:45.12:515,45,0 1/1:0,9:9:24.07:291,24,0 1/1:0,11:11:30.09:354,30,0 1/1:0,22:23:57.16:667,57,0 1/1:0,22:22:60.13:668,60,0 1/1:0,12:13:30.08:337,30,0 1/1:0,8:8:21.06:236,21,0 1/1:0,15:16:36.10:428,36,0 1/1:0,15:15:42.10:475,42,0 1/1:1,19:20:45.13:546,45,0 1/1:0,21:21:63.16:699,63,0 1/1:0,44:45:99:1440,126,0 1/1:0,19:19:48.14:549,48,0 1/1:0,30:33:81.21:930,81,0 0/1:10,6:16:99:156,0,311 1/1:0,8:8:21.04:225,21,0 0/1:5,7:12:99:167,0,159 1/1:0,9:9:24.06:277,24,0 1/1:0,9:10:24.07:277,24,0 1/1:0,8:8:24.06:272,24,0 1/1:0,18:18:48.11:555,48,0 1/1:0,18:18:45.10:504,45,0 1/1:0,9:9:24.02:246,24,0 1/1:0,12:12:33.07:380,33,0 1/1:0,8:9:18.05:210,18,0 1/1:0,18:19:51.14:591,51,0 1/1:0,12:12:30.07:336,30,0 1/1:0,11:11:30.09:363,30,0 0/1:7,10:17:99:218,0,214 0/1:2,7:9:51.09:151,0,51 1/1:0,9:9:24.06:271,24,0 17 73258028 . C T 967.06 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.676;DP=1122;Dels=0.00;FS=10.646;HRun=0;HaplotypeScore=0.8833;InbreedingCoeff=-0.0244;MQ=59.31;MQ0=0;MQRankSum=0.379;QD=7.27;ReadPosRankSum=1.772 GT:AD:DP:GQ:PL 0/0:19,0:19:42.12:0,42,497 0/0:24,0:24:57.13:0,57,672 0/0:16,0:16:42.13:0,42,525 0/1:53,24:78:99:574,0,1485 0/1:36,19:55:99:456,0,1021 0/0:40,0:40:99:0,105,1275 0/0:44,0:44:99:0,111,1386 0/0:38,0:38:99:0,102,1273 0/0:20,0:20:48.13:0,48,585 0/0:20,0:20:45.13:0,45,545 0/0:20,0:20:48.13:0,48,558 0/0:19,0:19:54.14:0,54,617 0/0:17,0:17:45.10:0,45,491 0/0:20,0:20:57.16:0,57,678 0/0:52,0:52:99:0,126,1495 0/0:26,0:26:63.18:0,63,745 0/0:15,0:15:39.11:0,39,461 0/0:14,0:14:42.11:0,42,487 0/0:28,0:28:66.14:0,66,740 0/0:30,0:30:81.22:0,81,937 0/0:23,0:23:63.17:0,63,727 0/0:26,0:26:69.17:0,69,764 0/0:61,0:61:99:0,169,2080 0/0:36,0:36:93.28:0,93,1186 0/0:49,0:49:99:0,120,1551 0/0:30,1:32:78.24:0,78,987 0/0:17,0:17:36.10:0,36,425 0/0:12,0:12:30.06:0,30,342 0/0:13,0:13:36.10:0,36,413 0/0:16,0:16:42.12:0,42,494 0/0:12,0:12:33.09:0,33,381 0/0:27,0:27:72.19:0,72,855 0/0:30,0:30:78.18:0,78,887 0/0:24,0:24:66.16:0,66,745 0/0:14,0:14:42.08:0,42,446 0/0:15,0:15:42.12:0,42,503 0/0:29,0:29:84.19:0,84,926 0/0:17,0:17:48.14:0,48,563 0/0:18,0:18:48.12:0,48,551 0/0:20,0:20:48.13:0,48,561 0/0:20,0:20:54.11:0,54,582 0/0:16,0:16:45.09:0,45,498 17 73279624 . A G 33839.71 . 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C T 3640.08 . AC=3;AF=0.036;AN=84;BaseQRankSum=-13.529;DP=4712;DS;Dels=0.00;FS=10.552;HRun=0;HaplotypeScore=5.7700;InbreedingCoeff=-0.0370;MQ=58.73;MQ0=0;MQRankSum=0.680;QD=13.89;ReadPosRankSum=0.153 GT:AD:DP:GQ:PL 0/0:87,0:88:99:0,232,2884 0/1:39,39:78:99:1060,0,1173 0/1:31,43:74:99:1206,0,827 0/0:228,1:229:99:0,555,7784 0/0:172,1:173:99:0,424,6024 0/0:152,0:153:99:0,397,5293 0/0:129,0:129:99:0,340,4540 0/0:159,0:159:99:0,409,5506 0/0:82,0:82:99:0,217,2713 0/0:71,0:71:99:0,193,2414 0/0:70,0:70:99:0,193,2368 0/0:72,0:72:99:0,196,2460 0/0:55,0:55:99:0,153,1931 0/0:89,0:89:99:0,250,3148 0/0:250,0:250:99:0,632,8032 0/0:80,0:80:99:0,223,2749 0/0:84,0:84:99:0,223,2796 0/0:75,0:75:99:0,205,2530 0/0:162,0:163:99:0,433,5402 0/0:204,0:204:99:0,536,6873 0/0:159,0:159:99:0,439,5524 0/0:107,0:107:99:0,286,3662 0/0:208,0:208:99:0,551,7380 0/0:123,0:123:99:0,325,4359 0/0:148,0:148:99:0,376,5043 0/0:97,0:97:99:0,247,3273 0/0:51,0:51:99:0,153,1895 0/0:96,0:96:99:0,256,3178 0/0:69,0:69:99:0,196,2478 0/0:85,0:85:99:0,238,2979 0/0:70,0:70:99:0,196,2473 0/0:153,0:153:99:0,385,4977 0/1:56,54:110:99:1374,0,1665 0/0:87,0:87:99:0,235,2922 0/0:110,0:110:99:0,289,3679 0/0:97,0:97:99:0,265,3303 0/0:154,0:155:99:0,433,5370 0/0:82,0:82:99:0,226,2794 0/0:93,0:94:99:0,259,3240 0/0:80,0:80:99:0,214,2637 0/0:79,0:79:99:0,211,2650 0/0:74,0:74:99:0,211,2670 17 73489974 . G A 1982.59 . 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G C 18154.67 . AC=24;AF=0.286;AN=84;BaseQRankSum=-11.654;DP=1856;Dels=0.00;FS=2.501;HRun=0;HaplotypeScore=0.9903;InbreedingCoeff=0.3000;MQ=59.18;MQ0=0;MQRankSum=-0.766;QD=22.72;ReadPosRankSum=-1.423 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,120,1529 0/0:49,0:49:99:0,135,1735 0/0:30,0:30:84.26:0,84,1070 0/0:63,0:63:99:0,157,2178 0/0:50,0:50:99:0,138,1873 0/1:28,20:48:99:541,0,929 0/1:13,15:28:99:415,0,450 0/1:19,14:34:99:367,0,697 1/1:0,50:50:99:1629,129,0 1/1:0,23:23:69.21:834,69,0 0/1:12,16:28:99:462,0,349 0/0:41,0:42:99:0,108,1388 0/1:15,15:30:99:388,0,423 0/0:33,0:33:90.27:0,90,1136 1/1:0,141:141:99:4472,352,0 1/1:0,29:29:84.23:1031,84,0 1/1:0,39:40:99:1437,117,0 0/0:39,0:39:99:0,108,1337 0/0:71,0:71:99:0,199,2495 0/1:34,45:79:99:1234,0,1016 0/0:57,0:57:99:0,156,2003 0/1:19,21:40:99:605,0,568 0/0:84,0:84:99:0,223,3082 0/0:21,0:21:60.20:0,60,847 0/1:10,28:38:99:854,0,312 0/0:35,0:35:93.31:0,93,1286 0/0:28,0:28:81.25:0,81,1019 0/0:56,0:56:99:0,160,2038 0/1:21,13:34:99:361,0,652 0/0:30,0:30:84.27:0,84,1078 0/0:39,0:39:99:0,111,1394 0/0:53,0:54:99:0,141,1826 0/0:37,0:37:99:0,105,1349 0/0:41,0:41:99:0,114,1441 0/1:9,19:28:99:582,0,219 0/0:36,0:36:99:0,99,1285 1/1:0,55:55:99:1751,144,0 0/1:17,25:42:99:705,0,428 0/1:15,17:32:99:486,0,395 0/0:40,0:40:99:0,117,1488 0/0:36,0:36:99:0,102,1313 0/0:43,0:43:99:0,120,1531 17 73500931 . C T 649.03 . AC=3;AF=0.036;AN=84;BaseQRankSum=-5.420;DP=995;Dels=0.00;FS=2.545;HRun=1;HaplotypeScore=0.9672;InbreedingCoeff=-0.0375;MQ=58.83;MQ0=0;MQRankSum=-0.002;QD=12.25;ReadPosRankSum=1.220 GT:AD:DP:GQ:PL 0/0:18,0:18:48.15:0,48,613 0/1:11,6:17:99:170,0,302 0/1:7,7:14:99:186,0,166 0/0:60,0:60:99:0,160,2107 0/0:45,0:47:99:0,126,1697 0/0:32,0:32:87.28:0,87,1158 0/0:20,0:20:54.16:0,54,723 0/0:34,0:34:96.31:0,96,1259 0/0:14,0:14:39.12:0,39,498 0/0:11,0:11:30.09:0,30,371 0/0:11,0:11:33.10:0,33,409 0/0:17,0:17:45.14:0,45,574 0/0:10,0:10:27.09:0,27,349 0/0:21,0:21:60.19:0,60,752 0/0:61,0:61:99:0,165,2058 0/0:18,1:19:48.15:0,48,617 0/0:5,0:5:15.05:0,15,186 0/0:14,0:14:36.11:0,36,445 0/0:35,0:35:87.23:0,87,1061 0/0:48,0:48:99:0,129,1656 0/0:36,0:36:93.29:0,93,1182 0/0:26,0:26:66.20:0,66,830 0/0:61,0:61:99:0,160,2143 0/0:31,0:31:69.22:0,69,942 0/0:18,0:18:51.16:0,51,661 0/0:22,0:22:60.20:0,60,804 0/0:12,0:12:33.10:0,33,416 0/0:18,0:18:51.16:0,51,627 0/0:13,0:13:36.12:0,36,466 0/0:16,0:16:39.12:0,39,502 0/0:17,0:17:39.13:0,39,524 0/0:27,0:27:69.22:0,69,897 0/1:9,13:22:99:369,0,275 0/0:25,0:25:69.22:0,69,882 0/0:12,0:12:27.09:0,27,355 0/0:13,0:13:36.11:0,36,456 0/0:31,0:31:78.23:0,78,994 0/0:15,0:15:33.11:0,33,434 0/0:18,0:18:48.14:0,48,591 0/0:18,0:18:54.15:0,54,657 0/0:21,0:21:57.18:0,57,717 0/0:15,0:15:45.14:0,45,569 17 73501134 . G A 281.41 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.792;DP=1705;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.6442;InbreedingCoeff=-0.0121;MQ=58.70;MQ0=0;MQRankSum=-0.187;QD=12.79;ReadPosRankSum=0.563 GT:AD:DP:GQ:PL 0/0:28,0:28:69.18:0,69,814 0/0:17,0:17:42.09:0,42,473 0/1:11,11:22:99:328,0,281 0/0:122,0:122:99:0,289,3554 0/0:98,0:98:99:0,241,3060 0/0:77,0:78:99:0,187,2247 0/0:56,0:56:99:0,138,1695 0/0:61,0:61:99:0,135,1672 0/0:19,0:19:42.07:0,42,450 0/0:31,0:31:75.22:0,75,921 0/0:30,0:30:75.20:0,75,858 0/0:22,0:22:54.14:0,54,626 0/0:13,0:13:33.08:0,33,370 0/0:21,0:21:57.16:0,57,655 0/0:85,0:85:99:0,217,2494 0/0:33,0:33:84.22:0,84,965 0/0:27,0:27:69.19:0,69,816 0/0:28,0:28:60.19:0,60,754 0/0:34,0:36:78.21:0,78,880 0/0:55,0:55:99:0,132,1552 0/0:46,0:46:99:0,117,1362 0/0:31,0:31:78.19:0,78,872 0/0:134,0:134:99:0,343,4237 0/0:44,0:44:99:0,111,1352 0/0:86,0:86:99:0,217,2660 0/0:62,0:64:99:0,141,1738 0/0:21,0:21:54.14:0,54,607 0/0:32,0:32:87.24:0,87,990 0/0:21,0:21:51.14:0,51,611 0/0:32,0:32:81.22:0,81,934 0/0:23,0:23:57.16:0,57,672 0/0:56,0:56:99:0,147,1675 0/0:28,0:28:69.20:0,69,811 0/0:21,0:21:54.13:0,54,619 0/0:20,0:20:54.15:0,54,634 0/0:19,0:19:45.12:0,45,516 0/0:29,0:29:78.22:0,78,911 0/0:26,0:26:75.21:0,75,865 0/0:26,0:26:75.18:0,75,838 0/0:21,0:21:57.16:0,57,657 0/0:16,0:16:42.12:0,42,498 0/0:27,0:27:72.14:0,72,785 17 73512653 . G T 18.16 . AC=2;AF=0.50;AN=4;BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=53.44;MQ0=0;MQRankSum=0.736;QD=6.05;ReadPosRankSum=0.736 GT:AD:DP:GQ:PL ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/1:0,1:1:1.76:23,3,0 ./. ./. ./. ./. ./. 0/1:1,1:2:30.11:30,0,35 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 17 73519413 . C T 93296.23 . AC=52;AF=0.619;AN=84;BaseQRankSum=-32.719;DP=4872;DS;Dels=0.00;FS=24.505;HRun=0;HaplotypeScore=2.1472;InbreedingCoeff=-0.0096;MQ=59.39;MQ0=0;MQRankSum=1.607;QD=21.84;ReadPosRankSum=-0.705 GT:AD:DP:GQ:PL 0/1:64,36:100:99:899,0,1882 0/0:86,1:88:99:0,211,3027 0/0:84,0:84:99:0,229,2885 0/1:110,93:203:99:2556,0,3339 0/1:80,104:184:99:2934,0,2514 1/1:0,149:150:99:5344,433,0 1/1:0,133:134:99:4434,361,0 0/1:86,65:151:99:1723,0,2598 1/1:0,102:104:99:3384,280,0 1/1:0,87:87:99:2987,253,0 1/1:0,93:94:99:3019,253,0 0/1:51,27:78:99:696,0,1564 0/1:33,46:79:99:1224,0,936 0/1:41,45:86:99:1268,0,1230 1/1:0,247:249:99:8284,701,0 1/1:0,87:87:99:2887,244,0 1/1:0,77:79:99:2641,220,0 0/1:47,44:91:99:1252,0,1355 0/1:54,62:119:99:1802,0,1557 0/1:78,63:141:99:1713,0,2338 0/1:93,62:155:99:1581,0,2631 1/1:0,82:82:99:2674,223,0 0/1:108,91:199:99:2530,0,3388 1/1:0,137:137:99:4642,379,0 1/1:0,172:172:99:5811,478,0 0/1:77,61:138:99:1697,0,2455 0/0:80,0:80:99:0,223,2780 0/1:56,43:99:99:1213,0,1593 0/1:50,40:90:99:1096,0,1463 1/1:0,90:91:99:2952,247,0 1/1:0,91:92:99:2931,250,0 0/0:141,1:142:99:0,350,4891 0/1:53,55:108:99:1479,0,1499 0/0:101,0:101:99:0,277,3527 0/1:45,53:98:99:1583,0,1223 0/1:50,40:90:99:1115,0,1520 1/1:0,150:150:99:4783,400,0 1/1:1,92:93:99:2917,215,0 1/1:0,80:80:99:2725,235,0 0/0:106,0:106:99:0,301,3802 0/1:42,34:76:99:981,0,1187 0/1:52,53:105:99:1539,0,1481 17 73559233 . G A 1370.11 . AC=3;AF=0.036;AN=84;BaseQRankSum=0.281;DP=1154;Dels=0.00;FS=6.416;HRun=0;HaplotypeScore=1.2100;InbreedingCoeff=-0.0373;MQ=58.87;MQ0=0;MQRankSum=-0.182;QD=15.75;ReadPosRankSum=0.628 GT:AD:DP:GQ:PL 0/1:3,11:14:66.55:321,0,67 0/1:12,8:20:99:218,0,273 0/0:26,0:26:72.17:0,72,795 0/0:55,0:56:99:0,156,1865 0/0:51,0:51:99:0,147,1803 0/0:26,0:26:72.22:0,72,902 0/0:29,0:29:75.23:0,75,976 0/0:37,0:37:96.27:0,96,1166 0/0:24,0:24:66.19:0,66,781 0/0:19,0:19:54.15:0,54,629 0/0:20,0:20:57.15:0,57,649 0/0:15,0:15:45.09:0,45,478 0/0:16,0:16:42.12:0,42,485 0/0:22,0:22:54.08:0,54,600 0/0:61,0:61:99:0,171,1964 0/0:30,0:30:87.21:0,87,966 0/0:22,0:22:60.14:0,60,686 0/0:20,0:20:48.13:0,48,548 0/0:34,0:34:78.20:0,78,895 0/0:35,0:35:99:0,99,1156 0/0:43,0:43:99:0,105,1174 0/0:33,0:33:90.19:0,90,1015 0/1:21,32:53:99:907,0,610 0/0:23,0:23:60.18:0,60,771 0/0:39,0:39:99:0,105,1319 0/0:26,0:27:69.20:0,69,845 0/0:25,0:25:72.17:0,72,802 0/0:12,0:12:33.09:0,33,373 0/0:15,0:15:45.09:0,45,500 0/0:18,1:19:16.33:0,16,536 0/0:24,0:25:66.15:0,66,766 0/0:45,0:45:99:0,117,1370 0/0:20,0:21:54.15:0,54,630 0/0:23,0:23:60.17:0,60,691 0/0:16,0:16:45.11:0,45,508 0/0:21,0:21:63.17:0,63,722 0/0:38,0:39:99:0,108,1236 0/0:17,0:17:51.13:0,51,560 0/0:16,0:16:48.13:0,48,546 0/0:27,0:27:81.23:0,81,926 0/0:18,0:18:48.14:0,48,565 0/0:20,0:20:54.16:0,54,628 17 73565164 . C T 1092.46 . AC=5;AF=0.060;AN=84;BaseQRankSum=0.428;DP=906;Dels=0.00;FS=27.599;HRun=0;HaplotypeScore=1.9857;InbreedingCoeff=-0.0635;MQ=58.53;MQ0=0;MQRankSum=1.350;QD=12.41;ReadPosRankSum=-0.223 GT:AD:DP:GQ:PL 0/0:19,0:19:48.13:0,48,562 0/1:8,12:20:99:333,0,211 0/1:7,6:14:99:166,0,185 0/0:41,0:41:99:0,114,1458 0/0:27,0:27:78.25:0,78,995 0/1:9,11:20:99:289,0,261 0/1:4,5:9:93.27:161,0,93 0/0:20,0:20:57.16:0,57,725 0/0:18,0:18:54.14:0,54,622 0/0:12,0:12:36.09:0,36,394 0/0:21,0:21:63.17:0,63,714 0/0:17,0:17:48.13:0,48,556 0/0:16,0:16:42.13:0,42,510 0/0:16,0:16:45.12:0,45,509 0/0:63,0:63:99:0,171,1911 0/0:23,0:23:69.19:0,69,788 0/0:20,0:20:51.12:0,51,597 0/0:9,0:9:27.07:0,27,303 0/0:25,0:25:75.20:0,75,843 0/0:29,0:29:81.22:0,81,946 0/0:35,1:36:78.65:0,79,1145 0/0:28,0:28:75.21:0,75,878 0/0:38,0:38:99:0,111,1412 0/0:6,0:6:18.05:0,18,211 0/0:21,0:21:57.16:0,57,722 0/0:12,0:12:36.12:0,36,466 0/0:12,0:12:36.10:0,36,418 0/0:13,0:13:39.12:0,39,462 0/0:14,0:14:42.11:0,42,464 0/0:20,0:20:54.16:0,54,642 0/0:11,0:12:33.09:0,33,364 0/0:36,0:36:93.26:0,93,1092 0/1:15,10:25:99:240,0,413 0/0:15,0:15:45.09:0,45,490 0/0:19,0:19:54.13:0,54,616 0/0:24,0:24:60.16:0,60,688 0/0:27,0:27:78.15:0,78,849 0/0:22,0:22:60.17:0,60,705 0/0:30,0:30:87.23:0,87,984 0/0:13,0:13:39.09:0,39,438 0/0:18,0:18:51.14:0,51,568 0/0:25,0:25:69.15:0,69,772 17 73565171 . T C 12104.61 . AC=33;AF=0.393;AN=84;BaseQRankSum=4.601;DP=940;Dels=0.00;FS=0.500;HRun=1;HaplotypeScore=1.7309;InbreedingCoeff=0.2483;MQ=58.51;MQ0=0;MQRankSum=2.059;QD=22.21;ReadPosRankSum=-1.697 GT:AD:DP:GQ:PL 0/1:11,12:23:99:314,0,323 0/1:11,11:22:99:323,0,343 0/1:7,7:14:99:224,0,191 0/0:42,0:42:99:0,111,1428 0/0:34,0:34:96.30:0,96,1227 1/1:0,21:21:60.19:782,60,0 1/1:0,8:8:24.07:300,24,0 0/1:11,11:22:99:345,0,339 1/1:0,19:19:57.17:713,57,0 1/1:0,14:14:42.13:532,42,0 0/1:9,8:17:99:257,0,286 0/0:18,0:18:48.15:0,48,610 0/0:18,0:18:45.14:0,45,580 0/0:16,0:16:48.12:0,48,588 1/1:0,61:62:99:2024,159,0 1/1:0,25:25:72.23:905,72,0 0/1:10,11:21:99:324,0,260 0/0:7,0:7:21.07:0,21,263 0/0:24,0:24:69.21:0,69,855 0/1:16,14:30:99:448,0,457 0/0:35,0:35:99:0,99,1236 0/0:30,0:30:84.25:0,84,1031 0/0:37,0:37:99:0,108,1378 0/0:4,0:4:12.04:0,12,156 0/1:15,10:25:99:311,0,388 0/1:9,2:11:50.36:50,0,318 0/0:13,0:13:39.10:0,39,470 0/0:16,0:16:48.15:0,48,602 0/0:16,0:16:48.15:0,48,582 0/0:22,0:22:60.16:0,60,740 0/0:13,0:13:39.12:0,39,475 0/0:30,0:30:78.22:0,78,967 0/1:12,10:22:99:312,0,344 1/1:0,16:16:48.14:583,48,0 1/1:0,20:20:57.17:711,57,0 0/1:13,14:27:99:422,0,340 1/1:0,32:32:93.28:1139,93,0 0/1:17,8:25:99:232,0,530 0/1:17,11:28:99:336,0,545 0/1:8,6:14:99:178,0,243 0/0:20,0:20:57.17:0,57,700 0/1:16,11:27:99:340,0,400 17 73566561 . G A 1951.66 . AC=23;AF=0.280;AN=82;BaseQRankSum=0.812;DP=219;Dels=0.00;FS=2.830;HRun=0;HaplotypeScore=0.2035;InbreedingCoeff=0.2508;MQ=58.33;MQ0=0;MQRankSum=-0.848;QD=20.99;ReadPosRankSum=1.450 GT:AD:DP:GQ:PL 0/1:2,1:3:28.77:29,0,65 0/0:3,0:3:9.02:0,9,102 0/0:3,0:3:6.02:0,6,71 0/0:13,0:13:36.09:0,36,414 0/0:10,0:10:24.07:0,24,288 0/1:1,3:4:18.56:92,0,19 0/1:1,1:2:32.56:33,0,35 0/1:2,6:8:48.82:174,0,49 1/1:0,7:7:18.06:229,18,0 1/1:0,5:5:12.04:147,12,0 0/1:1,3:4:22.32:97,0,22 0/0:5,0:5:12.03:0,12,146 0/1:1,0:1:1.76:0,3,32 0/0:2,0:2:6.02:0,6,70 1/1:0,13:13:33.10:420,33,0 1/1:0,5:5:15.05:186,15,0 0/1:2,2:4:25.33:25,0,55 0/0:2,0:2:6.02:0,6,69 0/0:4,0:4:9.03:0,9,105 0/1:5,2:7:56.72:57,0,139 0/0:6,0:6:18.05:0,18,203 0/0:6,0:6:18.04:0,18,200 0/0:11,0:11:27.09:0,27,368 0/0:3,0:3:9.02:0,9,106 0/1:3,4:7:97.47:121,0,97 0/0:1,0:1:3.01:0,3,34 0/0:1,0:1:3.01:0,3,39 0/0:5,0:5:12.04:0,12,145 0/0:6,0:6:12.04:0,12,157 0/0:5,0:5:12.04:0,12,153 0/0:5,0:5:12.03:0,12,132 0/0:5,0:5:15.04:0,15,176 0/0:10,0:10:27.08:0,27,322 0/0:3,0:3:9.03:0,9,110 0/1:3,3:6:56.29:56,0,89 0/0:4,0:4:12.04:0,12,152 1/1:0,10:10:30.07:352,30,0 1/1:0,2:2:6.02:71,6,0 0/1:3,2:5:57.19:57,0,80 0/0:5,0:5:15.04:0,15,180 0/0:8,0:8:24.07:0,24,287 ./. 17 73567801 . G A 778.39 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.645;DP=1350;Dels=0.00;FS=2.277;HRun=0;HaplotypeScore=1.0796;InbreedingCoeff=-0.0244;MQ=58.98;MQ0=0;MQRankSum=1.023;QD=12.16;ReadPosRankSum=-0.899 GT:AD:DP:GQ:PL 0/0:23,0:23:63.18:0,63,779 0/0:26,0:26:75.23:0,75,935 0/0:26,0:26:72.23:0,72,900 0/0:77,0:78:99:0,226,2903 0/0:61,0:62:99:0,175,2274 0/0:42,0:42:99:0,108,1422 0/1:19,24:43:99:604,0,597 0/0:33,0:33:90.28:0,90,1183 0/0:29,0:29:75.23:0,75,927 0/1:12,9:21:99:237,0,353 0/0:20,0:20:60.18:0,60,722 0/0:23,0:23:66.17:0,66,805 0/0:22,0:22:63.19:0,63,780 0/0:25,0:25:72.20:0,72,890 0/0:59,0:61:99:0,171,2068 0/0:38,0:38:99:0,108,1322 0/0:22,0:22:60.18:0,60,741 0/0:21,0:21:60.17:0,60,720 0/0:36,0:37:99:0,102,1272 0/0:53,0:53:99:0,144,1755 0/0:40,0:40:99:0,114,1423 0/0:30,0:30:81.22:0,81,957 0/0:57,0:57:99:0,168,2202 0/0:40,0:40:99:0,117,1524 0/0:46,1:47:99:0,112,1751 0/0:39,0:39:99:0,111,1467 0/0:22,0:22:60.18:0,60,730 0/0:26,0:26:78.21:0,78,933 0/0:18,0:18:48.15:0,48,609 0/0:33,0:33:96.27:0,96,1162 0/0:19,0:20:54.15:0,54,654 0/0:29,0:29:81.26:0,81,1035 0/0:35,0:35:99:0,99,1188 0/0:28,0:28:66.19:0,66,813 0/0:11,0:11:33.10:0,33,400 0/0:19,0:19:51.16:0,51,632 0/0:31,0:32:84.19:0,84,1006 0/0:22,0:22:63.19:0,63,797 0/0:28,0:28:75.21:0,75,907 0/0:20,0:20:60.19:0,60,741 0/0:28,0:28:72.20:0,72,866 0/0:21,0:21:60.18:0,60,743 17 73567846 . C T 12600.73 . AC=25;AF=0.298;AN=84;BaseQRankSum=-14.454;DP=1602;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.1845;InbreedingCoeff=0.2590;MQ=58.49;MQ0=0;MQRankSum=5.315;QD=17.72;ReadPosRankSum=-1.883 GT:AD:DP:GQ:PL 0/1:18,9:27:99:216,0,514 0/0:26,0:26:75.23:0,75,942 0/0:24,0:24:66.19:0,66,803 0/0:111,0:111:99:0,277,3602 0/0:76,0:76:99:0,184,2409 0/1:25,22:47:99:594,0,674 0/1:22,32:54:99:832,0,514 0/1:24,21:45:99:546,0,715 1/1:1,22:23:60.18:737,60,0 1/1:0,26:26:72.22:880,72,0 0/1:6,13:19:99:343,0,152 0/0:15,0:15:39.12:0,39,500 0/0:18,0:18:51.12:0,51,597 0/0:30,0:30:87.27:0,87,1083 1/1:1,77:79:99:2290,161,0 1/1:0,30:30:87.24:1018,87,0 0/1:17,13:30:99:330,0,513 0/0:25,0:25:72.22:0,72,902 0/0:40,0:40:99:0,102,1274 0/1:44,20:64:99:482,0,1152 0/0:49,0:49:99:0,120,1461 0/0:31,0:31:84.24:0,84,1037 0/0:82,1:83:99:0,181,2790 0/0:40,0:40:93.26:0,93,1217 0/1:39,37:76:99:947,0,1017 0/0:64,0:64:99:0,147,1966 0/0:21,0:22:63.19:0,63,775 0/0:28,0:28:72.23:0,72,925 0/0:25,0:25:72.20:0,72,896 0/0:34,0:34:90.28:0,90,1142 0/0:13,0:13:33.07:0,33,396 0/0:44,0:45:99:0,111,1365 0/0:37,0:37:99:0,102,1281 0/1:15,10:25:99:295,0,378 1/1:2,21:23:21.59:638,22,0 0/0:32,0:32:87.25:0,87,1087 1/1:0,37:38:93.25:1111,93,0 0/1:15,11:26:99:260,0,418 0/1:14,16:30:99:468,0,388 0/1:13,13:26:99:364,0,373 0/0:22,1:23:26.16:0,26,679 0/1:11,12:23:99:250,0,344 17 73623774 . T C 70.20 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.194;DP=522;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.3355;InbreedingCoeff=-0.0283;MQ=56.94;MQ0=0;MQRankSum=1.311;QD=3.90;ReadPosRankSum=1.434 GT:AD:DP:GQ:PL 0/0:13,0:13:33.10:0,33,410 0/0:7,0:7:21.06:0,21,256 0/0:9,0:9:24.08:0,24,301 0/0:12,0:12:30.10:0,30,387 0/0:8,0:8:21.07:0,21,272 0/0:10,0:10:30.10:0,30,387 0/0:13,0:13:33.10:0,33,417 0/0:13,0:13:33.11:0,33,426 0/0:15,0:15:36.11:0,36,447 0/0:11,0:11:33.10:0,33,407 0/0:13,0:13:36.11:0,36,444 0/0:4,0:4:12.04:0,12,149 0/0:8,0:8:24.07:0,24,292 0/0:13,0:13:33.10:0,33,412 0/0:37,0:37:96.26:0,96,1156 0/0:17,0:17:48.13:0,48,571 0/0:8,0:8:18.05:0,18,211 0/0:11,0:11:27.09:0,27,344 0/0:22,1:23:60.17:0,60,715 0/0:23,0:23:57.18:0,57,725 0/0:19,0:19:45.14:0,45,576 0/0:12,0:12:33.09:0,33,394 0/0:10,0:10:24.08:0,24,314 0/0:8,0:8:24.07:0,24,290 0/0:5,0:5:15.05:0,15,183 0/0:10,0:10:27.09:0,27,344 0/0:3,0:3:9.03:0,9,112 0/0:16,0:16:42.12:0,42,506 0/0:8,0:8:24.07:0,24,293 0/0:17,0:17:48.14:0,48,581 0/0:8,0:8:24.07:0,24,288 0/0:31,0:31:69.22:0,69,902 0/0:16,0:16:42.13:0,42,536 0/0:8,0:8:24.06:0,24,281 0/0:8,0:8:21.04:0,21,255 0/0:16,0:16:42.13:0,42,517 0/1:9,4:13:99:100,0,288 0/1:3,2:5:32.72:33,0,93 0/0:11,0:11:33.10:0,33,402 0/0:14,0:14:39.12:0,39,490 0/0:6,0:6:15.05:0,15,194 0/0:10,0:10:27.09:0,27,338 17 73624353 . T G 1481.44 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.452;DP=2822;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.1418;InbreedingCoeff=-0.0244;MQ=58.94;MQ0=0;MQRankSum=0.452;QD=10.58;ReadPosRankSum=-1.668 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,111,1349 0/0:52,0:52:99:0,138,1677 0/0:49,0:49:99:0,138,1638 0/0:147,0:147:99:0,403,4976 0/0:125,0:125:99:0,352,4367 0/0:84,0:84:99:0,220,2821 0/0:85,1:86:99:0,226,2841 0/0:79,0:79:99:0,214,2659 0/0:46,1:47:99:0,120,1483 0/0:45,0:45:99:0,120,1452 0/0:38,0:38:99:0,111,1329 0/0:47,0:47:99:0,129,1573 0/0:33,0:33:96.28:0,96,1132 0/0:40,0:40:99:0,114,1392 0/0:137,0:137:99:0,379,4585 0/0:54,0:54:99:0,147,1770 0/0:47,0:47:99:0,135,1635 0/1:27,9:36:99:252,0,753 0/1:58,46:104:99:1292,0,1689 0/0:112,1:113:99:0,280,3504 0/0:102,1:103:99:0,277,3367 0/0:69,0:70:99:0,199,2346 0/0:140,0:140:99:0,373,4667 0/0:64,1:65:99:0,181,2281 0/0:89,0:89:99:0,244,3034 0/0:66,0:66:99:0,190,2352 0/0:37,0:37:99:0,102,1220 0/0:53,0:53:99:0,150,1795 0/0:46,0:46:99:0,132,1594 0/0:52,0:52:99:0,141,1713 0/0:51,0:51:99:0,144,1715 0/0:107,0:107:99:0,286,3510 0/0:78,0:78:99:0,211,2552 0/0:46,0:46:99:0,132,1610 0/0:37,0:37:99:0,105,1253 0/0:56,0:56:99:0,153,1888 0/0:90,0:90:99:0,244,2971 0/0:49,0:49:99:0,141,1630 0/0:54,0:54:99:0,153,1842 0/0:43,0:43:99:0,111,1376 0/0:46,0:46:99:0,129,1552 0/0:42,0:42:99:0,123,1492 17 73625852 . C T 1187.09 . 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T C 15839.36 . 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A G 90245.56 . 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G A 4505.17 . 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A G 22021.63 . 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C T 1495.45 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.096;DP=3622;DS;Dels=0.00;FS=5.189;HRun=0;HaplotypeScore=4.6427;InbreedingCoeff=-0.0244;MQ=59.12;MQ0=1;MQRankSum=0.795;QD=12.89;ReadPosRankSum=-1.179 GT:AD:DP:GQ:PL 0/1:30,27:57:99:682,0,707 0/1:26,33:59:99:876,0,604 0/0:54,0:54:99:0,144,1641 0/0:163,0:164:99:0,427,5066 0/0:149,0:149:99:0,409,4809 0/0:130,0:130:99:0,337,4136 0/0:110,0:110:99:0,286,3435 0/0:125,1:126:99:0,310,4007 0/0:67,0:67:99:0,183,2015 0/0:66,0:66:99:0,183,2045 0/0:57,0:57:99:0,159,1757 0/0:56,0:56:99:0,159,1785 0/0:48,0:48:99:0,126,1426 0/0:67,0:67:99:0,177,2052 0/0:172,0:172:99:0,460,5135 0/0:66,0:66:99:0,183,2057 0/0:72,0:72:99:0,195,2196 0/0:49,0:49:99:0,117,1304 0/0:130,0:130:99:0,343,3893 0/0:146,0:146:99:0,379,4262 0/0:137,0:137:99:0,352,4029 0/0:94,0:95:99:0,262,2903 0/0:129,0:129:99:0,358,4237 0/0:105,0:105:99:0,271,3282 0/0:109,0:109:99:0,292,3491 0/0:97,0:97:99:0,244,2935 0/0:52,0:52:99:0,144,1624 0/0:57,0:57:99:0,147,1608 0/0:63,1:64:99:0,174,1976 0/0:56,0:56:99:0,156,1699 0/0:66,0:66:99:0,177,1983 0/0:153,0:153:99:0,400,4687 0/0:92,0:93:99:0,253,2857 0/0:72,0:72:99:0,198,2193 0/0:38,0:38:99:0,108,1175 0/0:60,0:60:99:0,165,1845 0/0:120,1:121:99:0,322,3653 0/0:62,0:62:99:0,156,1769 0/0:44,0:44:99:0,120,1351 0/0:49,0:49:99:0,132,1459 0/0:45,0:46:99:0,123,1345 0/0:72,0:72:99:0,199,2256 17 73824963 . 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T C 11466.61 . AC=20;AF=0.238;AN=84;BaseQRankSum=0.816;DP=1859;Dels=0.00;FS=14.085;HRun=0;HaplotypeScore=1.5759;InbreedingCoeff=-0.1813;MQ=59.28;MQ0=0;MQRankSum=0.286;QD=14.21;ReadPosRankSum=-1.058 GT:AD:DP:GQ:PL 0/1:17,10:28:99:274,0,495 0/1:14,10:24:99:196,0,447 0/0:28,0:28:78.23:0,78,931 0/0:133,0:133:99:0,328,4131 0/0:86,0:86:99:0,217,2685 0/1:29,27:57:99:690,0,762 1/1:0,50:51:99:1572,120,0 0/0:54,0:54:99:0,132,1642 0/0:24,0:24:69.20:0,69,815 0/0:29,1:30:46.45:0,46,929 0/0:32,0:32:90.26:0,90,1073 0/1:21,14:35:99:362,0,519 0/0:32,0:32:78.22:0,78,945 0/1:10,11:21:99:285,0,306 0/1:58,58:116:99:1462,0,1457 0/1:14,17:31:99:444,0,375 0/1:14,11:26:99:304,0,434 0/0:29,0:29:72.22:0,72,907 0/1:35,41:76:99:983,0,862 0/1:20,38:59:99:989,0,456 0/0:54,0:54:99:0,135,1629 0/0:26,0:26:69.20:0,69,841 0/0:124,0:124:99:0,313,3877 0/1:26,32:58:99:774,0,665 0/0:55,0:55:99:0,135,1681 0/1:26,23:49:99:619,0,676 0/0:24,0:24:69.21:0,69,833 0/1:5,18:23:99:538,0,113 0/0:32,0:32:78.24:0,78,989 0/0:25,0:25:66.20:0,66,804 0/0:24,0:24:69.20:0,69,831 0/0:62,1:63:99:0,127,1945 0/1:26,19:45:99:417,0,760 0/1:4,12:16:82.38:375,0,82 0/0:29,0:29:75.21:0,75,905 0/1:19,18:37:99:454,0,587 0/0:52,0:53:99:0,126,1570 0/1:16,11:27:99:284,0,381 0/0:34,0:34:87.26:0,87,1071 0/0:31,0:32:87.26:0,87,1041 0/1:11,17:28:99:443,0,295 0/0:29,0:29:78.24:0,78,958 17 73830182 . C T 963.36 . 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G A 1298.87 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.466;DP=2053;Dels=0.00;FS=1.758;HRun=0;HaplotypeScore=1.7648;InbreedingCoeff=-0.0244;MQ=59.13;MQ0=0;MQRankSum=1.713;QD=15.65;ReadPosRankSum=2.140 GT:AD:DP:GQ:PL 0/0:44,1:45:92.38:0,92,1406 0/0:38,0:38:99:0,105,1173 0/0:36,0:36:99:0,105,1190 0/0:83,0:83:99:0,244,2968 0/0:83,0:83:99:0,232,2884 0/0:63,1:64:99:0,142,2142 0/0:56,0:56:99:0,153,1915 0/0:58,0:58:99:0,159,1972 0/0:35,0:35:99:0,102,1162 0/0:45,0:45:99:0,117,1300 0/0:41,0:41:99:0,114,1297 0/0:43,0:44:99:0,120,1377 0/0:24,0:25:72.18:0,72,795 0/0:41,1:42:99:0,120,1338 0/0:122,0:122:99:0,349,3969 0/0:55,0:55:99:0,162,1855 0/0:34,0:34:90.25:0,90,1037 0/0:32,0:32:90.20:0,90,969 0/0:68,0:68:99:0,192,2147 0/0:70,0:70:99:0,196,2250 0/0:69,0:69:99:0,186,2100 0/0:48,1:49:89.34:0,89,1369 0/0:88,1:89:99:0,220,3076 0/1:18,15:33:99:414,0,551 0/1:18,32:50:99:947,0,494 0/0:33,0:33:90.27:0,90,1112 0/0:18,0:18:51.13:0,51,567 0/0:38,0:38:99:0,111,1220 0/0:29,0:29:81.22:0,81,918 0/0:49,0:49:99:0,138,1596 0/0:43,0:43:99:0,117,1342 0/0:84,0:84:99:0,241,2741 0/0:49,0:50:99:0,138,1515 0/0:31,0:31:93.24:0,93,1023 0/0:48,0:48:99:0,132,1528 0/0:29,0:29:81.21:0,81,924 0/0:53,0:53:99:0,147,1675 0/0:30,0:30:87.22:0,87,962 0/0:40,0:40:99:0,114,1280 0/0:43,0:45:99:0,126,1415 0/0:27,0:27:75.20:0,75,849 0/0:40,0:40:99:0,117,1352 17 73836162 . C G 7271.51 . AC=21;AF=0.250;AN=84;BaseQRankSum=13.517;DP=910;Dels=0.00;FS=9.494;HRun=2;HaplotypeScore=0.7776;InbreedingCoeff=-0.0796;MQ=58.41;MQ0=0;MQRankSum=1.572;QD=18.55;ReadPosRankSum=1.759 GT:AD:DP:GQ:PL 0/1:5,7:12:99:217,0,112 0/1:5,6:11:99:136,0,104 0/0:10,0:10:27.03:0,27,274 0/0:55,0:55:99:0,138,1660 0/0:39,0:39:99:0,102,1220 0/1:17,14:31:99:378,0,466 1/1:0,26:26:66.22:896,66,0 0/0:32,0:32:81.21:0,81,946 0/0:23,0:23:57.10:0,57,624 0/0:11,0:11:27.08:0,27,323 0/0:14,0:14:33.09:0,33,372 0/0:13,0:13:33.08:0,33,352 0/0:17,0:17:42.09:0,42,458 0/0:17,0:17:42.10:0,42,476 0/1:17,27:44:99:718,0,368 0/1:7,4:11:86.95:87,0,173 0/1:7,9:16:99:260,0,166 0/0:16,0:16:45.06:0,45,464 0/1:10,10:20:99:324,0,196 0/1:5,20:25:82.72:587,0,83 0/0:27,0:27:66.16:0,66,740 0/0:18,0:18:51.08:0,51,536 0/0:54,0:54:99:0,144,1730 0/1:16,19:35:99:564,0,373 0/0:37,0:37:87.25:0,87,1051 0/1:9,24:33:99:723,0,187 0/0:14,0:14:33.08:0,33,362 0/1:6,8:14:99:243,0,145 0/0:20,0:20:60.12:0,60,644 0/0:9,0:9:24.06:0,24,270 0/0:19,0:19:51.12:0,51,584 0/0:29,0:29:72.20:0,72,839 0/1:7,9:16:99:263,0,207 0/1:6,8:14:99:256,0,164 0/0:10,0:10:30.08:0,30,346 0/1:5,10:15:99:301,0,110 0/1:13,14:27:99:317,0,323 1/1:0,18:18:48.15:590,48,0 0/0:13,0:13:30.07:0,30,325 0/0:20,0:20:51.13:0,51,558 0/1:2,10:12:31.07:254,0,31 0/1:7,5:12:99:158,0,159 17 73839304 . C T 274.74 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.429;DP=2122;Dels=0.00;FS=2.129;HRun=0;HaplotypeScore=1.9784;InbreedingCoeff=-0.0121;MQ=58.74;MQ0=0;MQRankSum=-0.094;QD=5.85;ReadPosRankSum=-0.676 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,102,1179 0/0:34,0:34:90.22:0,90,1044 0/0:31,0:31:81.19:0,81,893 0/0:117,0:119:99:0,277,3370 0/0:93,0:93:99:0,238,2901 0/0:79,0:79:99:0,174,2122 0/0:52,0:52:99:0,126,1544 0/0:61,0:61:99:0,147,1824 0/0:31,2:33:30.44:0,30,784 0/0:36,0:36:90.20:0,90,1013 0/0:40,0:40:81.21:0,81,1003 0/0:30,0:30:78.22:0,78,918 0/0:39,0:39:99:0,105,1179 0/0:34,0:34:84.23:0,84,990 0/0:142,0:142:99:0,337,4035 0/0:44,0:44:99:0,120,1370 0/0:25,0:25:66.13:0,66,742 0/0:20,0:21:57.14:0,57,640 0/0:58,0:58:99:0,147,1712 0/0:82,0:82:99:0,196,2334 0/0:66,0:66:99:0,162,1861 0/0:45,0:45:99:0,123,1443 0/0:116,0:117:99:0,286,3547 0/0:36,0:36:99:0,99,1173 0/0:67,0:67:99:0,156,1915 0/0:67,0:67:99:0,156,1956 0/0:32,0:32:81.19:0,81,948 0/0:39,0:39:99:0,99,1098 0/0:32,0:32:81.19:0,81,946 0/0:37,0:37:93.23:0,93,1080 0/0:38,0:38:99:0,99,1148 0/0:59,0:59:99:0,144,1693 0/1:33,14:47:99:321,0,786 0/0:45,0:45:99:0,114,1384 0/0:40,0:40:99:0,102,1197 0/0:34,0:34:78.21:0,78,914 0/0:59,0:59:99:0,144,1709 0/0:35,0:35:99:0,99,1130 0/0:31,0:31:84.20:0,84,945 0/0:40,0:40:99:0,105,1181 0/0:26,0:26:57.17:0,57,696 0/0:39,0:39:99:0,102,1226 17 73839326 . C T 150.96 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.106;DP=1592;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.1751;InbreedingCoeff=-0.0120;MQ=58.77;MQ0=0;MQRankSum=-0.335;QD=4.57;ReadPosRankSum=-0.037 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,117,1282 0/0:28,0:28:75.20:0,75,850 0/0:23,0:23:60.10:0,60,638 0/0:80,0:80:99:0,211,2527 0/0:65,0:65:99:0,169,2086 0/0:57,0:57:99:0,153,1855 0/0:42,0:42:99:0,114,1404 0/0:46,0:46:99:0,120,1468 0/0:21,0:21:54.12:0,54,583 0/0:27,0:27:72.19:0,72,800 0/0:31,0:31:78.22:0,78,915 0/0:26,0:26:66.17:0,66,761 0/0:30,0:30:78.22:0,78,894 0/0:30,0:30:78.22:0,78,926 0/0:101,0:101:99:0,244,2860 0/0:26,0:26:75.15:0,75,823 0/0:22,0:22:63.15:0,63,682 0/0:19,0:19:54.11:0,54,593 0/0:45,0:45:99:0,114,1263 0/0:61,0:61:99:0,156,1769 0/0:49,0:49:99:0,144,1603 0/0:40,0:40:99:0,108,1206 0/0:88,0:88:99:0,244,2914 0/0:21,0:21:57.16:0,57,669 0/0:41,0:41:99:0,117,1376 0/0:44,0:44:99:0,123,1457 0/0:28,0:28:69.19:0,69,829 0/0:31,0:31:78.19:0,78,903 0/0:23,0:23:63.17:0,63,704 0/0:26,1:27:41.22:0,41,797 0/0:29,0:29:87.22:0,87,961 0/0:42,0:43:99:0,108,1237 0/1:25,8:33:99:197,0,622 0/0:32,0:32:84.22:0,84,963 0/0:32,0:32:81.20:0,81,944 0/0:26,0:26:69.19:0,69,798 0/0:46,0:47:99:0,123,1366 0/0:30,0:30:84.21:0,84,920 0/0:22,0:22:66.15:0,66,705 0/0:30,0:30:84.21:0,84,956 0/0:23,0:23:57.15:0,57,633 0/0:29,0:29:84.22:0,84,935 17 73888117 . G T 76.92 . AC=8;AF=0.111;AN=72;BaseQRankSum=-3.135;DP=145;Dels=0.00;FS=69.134;HRun=2;HaplotypeScore=0.0241;InbreedingCoeff=-0.1855;MQ=57.76;MQ0=0;MQRankSum=-0.589;QD=3.08;ReadPosRankSum=-3.927 GT:AD:DP:GQ:PL 0/1:1,1:2:26.48:26,0,30 0/0:3,1:4:9.03:0,9,116 0/0:2,0:2:6.02:0,6,76 0/0:2,1:3:6.02:0,6,78 0/0:8,0:8:24.08:0,24,326 0/0:3,1:4:6.02:0,6,71 ./. ./. 0/1:2,1:3:25.33:25,0,66 0/0:2,0:2:6.02:0,6,72 0/0:5,0:5:15.05:0,15,184 0/0:4,0:4:9.03:0,9,113 0/0:1,0:1:3.01:0,3,39 ./. 0/0:8,0:8:24.07:0,24,297 0/0:3,0:3:9.03:0,9,106 0/1:4,2:6:18.39:18,0,133 0/0:3,2:5:6.02:0,6,80 0/1:1,0:1:1.76:0,3,29 0/0:6,0:6:18.06:0,18,230 0/0:7,2:9:21.06:0,21,254 0/0:3,0:3:9.03:0,9,113 0/0:7,1:8:21.07:0,21,275 0/0:1,1:2:3.01:0,3,33 0/0:1,0:1:3.01:0,3,39 ./. 0/1:1,1:2:27.42:33,0,27 0/0:4,0:4:6.02:0,6,77 0/1:2,1:3:25.53:26,0,32 0/1:4,1:5:27.10:27,0,68 0/1:1,2:3:23.61:24,0,33 0/0:7,1:8:21.07:0,21,260 0/0:6,0:6:15.05:0,15,189 0/0:3,1:4:9.03:0,9,114 0/0:1,2:3:3.01:0,3,39 0/0:4,0:4:12.04:0,12,152 0/0:1,0:1:3.01:0,3,39 ./. 0/0:3,0:3:9.03:0,9,116 ./. 0/0:2,1:3:6.02:0,6,79 0/0:3,1:4:9.03:0,9,113 17 73888262 . G A 118.25 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.853;DP=275;Dels=0.00;FS=1.551;HRun=1;HaplotypeScore=0.1776;InbreedingCoeff=-0.0502;MQ=57.12;MQ0=0;MQRankSum=1.378;QD=9.10;ReadPosRankSum=0.118 GT:AD:DP:GQ:PL 0/0:3,0:3:9.03:0,9,108 0/0:8,0:8:21.06:0,21,254 0/0:2,0:2:6.02:0,6,66 0/0:8,0:9:21.06:0,21,263 0/0:2,0:2:6.02:0,6,71 0/0:11,0:11:33.10:0,33,416 0/0:3,0:3:9.03:0,9,109 0/0:10,0:10:27.07:0,27,314 0/0:6,0:6:18.05:0,18,204 0/0:5,0:5:15.03:0,15,161 0/0:4,0:4:6.02:0,6,75 0/0:5,0:5:15.04:0,15,168 0/0:8,0:8:21.06:0,21,256 0/0:7,0:7:18.05:0,18,220 0/0:22,0:22:60.16:0,60,688 0/0:7,0:7:21.06:0,21,248 0/0:4,0:4:12.04:0,12,143 0/0:4,0:4:12.03:0,12,136 0/0:7,0:7:21.06:0,21,234 0/0:14,0:14:39.11:0,39,456 0/1:4,4:8:99:121,0,115 0/0:3,0:3:6.02:0,6,71 0/0:10,0:10:21.07:0,21,277 0/0:6,0:6:18.05:0,18,231 0/0:8,0:8:24.07:0,24,298 0/0:3,0:3:6.02:0,6,79 0/0:4,0:4:12.02:0,12,125 0/0:8,0:8:24.05:0,24,262 0/0:7,0:7:21.06:0,21,246 0/0:7,0:7:21.06:0,21,237 0/0:4,0:4:12.03:0,12,139 0/1:3,2:5:58.91:59,0,93 0/0:6,0:6:18.05:0,18,200 0/0:10,0:10:27.03:0,27,291 0/0:8,0:8:21.05:0,21,230 0/0:6,0:6:15.04:0,15,180 0/0:4,0:4:12.04:0,12,147 0/0:3,0:3:9.02:0,9,95 0/0:10,0:10:30.06:0,30,343 0/0:5,0:5:15.04:0,15,165 0/0:4,0:4:12.02:0,12,120 0/0:5,0:5:12.04:0,12,142 17 73910027 . C T 121.98 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.065;DP=217;Dels=0.00;FS=4.460;HRun=1;HaplotypeScore=0.2313;InbreedingCoeff=-0.0932;MQ=58.04;MQ0=0;MQRankSum=1.605;QD=6.42;ReadPosRankSum=0.925 GT:AD:DP:GQ:PL 0/0:7,0:7:21.07:0,21,265 0/0:5,0:5:15.05:0,15,183 0/0:3,0:3:9.01:0,9,94 0/0:9,0:9:24.08:0,24,319 0/0:7,0:7:21.07:0,21,284 0/0:3,0:3:9.02:0,9,111 0/0:3,0:3:9.03:0,9,120 0/0:6,0:6:18.05:0,18,222 0/1:3,2:5:54.52:55,0,92 0/0:5,0:5:12.03:0,12,151 0/1:5,2:7:47.63:48,0,153 0/0:2,0:2:6.02:0,6,75 0/0:7,0:7:18.05:0,18,216 0/0:3,0:3:9.03:0,9,103 0/0:19,0:19:54.16:0,54,659 0/0:10,0:10:30.09:0,30,367 0/0:3,0:3:6.02:0,6,76 0/0:6,0:6:18.06:0,18,229 0/0:9,0:9:24.08:0,24,308 0/0:7,0:7:18.03:0,18,212 0/0:1,0:1:3:0,3,26 0/0:1,1:2:3.01:0,3,39 0/0:6,0:6:18.06:0,18,234 0/0:2,0:2:6.02:0,6,70 0/0:4,0:4:12.04:0,12,150 0/0:2,0:2:6.01:0,6,70 0/0:3,0:3:6:0,6,61 0/0:2,0:2:6.02:0,6,75 0/0:2,0:2:3.01:0,3,40 0/0:1,0:1:3.01:0,3,39 0/0:4,0:4:12.03:0,12,137 0/0:15,0:15:39.11:0,39,489 0/1:4,3:7:93.45:93,0,93 0/0:5,0:5:15.05:0,15,186 0/0:1,0:1:3.01:0,3,39 0/0:4,0:4:6.02:0,6,80 0/0:5,0:5:15.05:0,15,185 0/0:4,0:4:12.02:0,12,133 0/0:7,0:7:18.06:0,18,220 0/0:6,0:6:18.06:0,18,219 0/0:2,0:2:6.02:0,6,71 0/0:6,0:6:15.05:0,15,196 17 73910884 . CGG C 269 . AC=17;AF=0.207;AN=82;BaseQRankSum=1.969;DP=319;FS=115.933;HRun=2;HaplotypeScore=25.8464;InbreedingCoeff=-0.3061;MQ=58.24;MQ0=0;MQRankSum=1.489;QD=1.83;ReadPosRankSum=-4.306 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,61 0/0:8,0:8:18.02:0,18,324 0/1:4,0:4:1.72:2,0,170 0/0:18,0:18:3.26:0,3,575 0/0:5,0:5:6.02:0,6,126 0/1:13,0:13:1.80:2,0,448 0/0:3,0:3:6.02:0,6,121 0/0:4,0:4:5.98:0,6,81 0/1:7,0:7:32.16:32,0,200 0/0:4,0:4:3.01:0,3,61 0/1:5,3:8:59.32:59,0,199 0/0:5,0:5:12.01:0,12,197 0/1:8,0:8:6.84:7,0,341 0/0:5,0:5:12.04:0,12,215 0/1:15,0:15:38.08:38,0,458 0/0:8,0:8:4.73:0,5,333 0/1:9,0:9:5.59:6,0,294 0/1:5,4:9:58.68:59,0,168 0/0:11,0:11:2.97:0,0,408 0/1:14,0:14:10.53:11,0,404 0/0:10,0:10:16.59:0,17,380 0/1:7,0:7:13.98:14,0,241 0/0:12,0:12:24.05:0,24,394 0/0:6,0:6:12.04:0,12,229 0/0:8,0:8:9.03:0,9,173 0/0:9,0:8:15.03:0,15,266 0/0:2,0:2:6.02:0,6,122 0/0:10,0:10:6.63:0,7,376 0/1:4,3:7:60.55:61,0,101 0/1:7,0:7:17.06:17,0,229 0/1:10,0:10:26.69:27,0,328 0/0:8,0:8:18.06:0,18,361 0/0:14,0:14:7.36:0,7,686 ./.:.:3:.:0,0,0 0/0:4,0:4:9.03:0,9,183 0/0:2,0:2:3.01:0,3,61 0/0:6,0:6:9.03:0,9,183 0/1:4,0:4:14.17:14,0,169 0/1:2,4:6:41.51:42,0,52 0/1:13,0:13:5.33:5,0,517 0/0:9,0:9:21.04:0,21,386 0/1:3,0:3:21.49:21,0,55 17 73910885 . G C 230.34 . AC=18;AF=0.220;AN=82;BaseQRankSum=-2.416;DP=319;Dels=0.04;FS=121.142;HRun=1;HaplotypeScore=1.0192;InbreedingCoeff=-0.3227;MQ=58.24;MQ0=0;MQRankSum=0.642;QD=1.40;ReadPosRankSum=-4.796 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,30 0/1:5,3:8:15.55:16,0,131 0/1:3,1:4:30.96:32,0,31 0/1:12,6:18:1.25:1,0,341 0/0:3,2:5:6.02:0,6,68 0/1:8,5:13:9.37:9,0,235 0/0:2,1:3:6.02:0,6,71 0/1:1,3:4:23.61:30,0,24 0/1:4,3:7:17.61:18,0,82 0/0:1,3:4:3.01:0,3,32 0/0:5,0:5:12.03:0,12,133 0/0:5,0:5:9.02:0,9,99 0/1:6,2:8:11.44:11,0,201 0/0:4,1:5:12:0,12,121 0/0:9,6:15:23.63:0,24,238 0/1:6,2:8:15.38:15,0,155 0/1:4,5:9:67.60:68,0,104 0/0:5,0:5:9.01:0,9,88 0/1:8,3:11:35.61:36,0,209 0/1:10,4:14:14.52:15,0,214 0/1:8,2:10:13.73:14,0,220 0/1:4,3:7:44.76:45,0,129 0/0:8,4:12:17.53:0,18,185 0/0:4,2:6:12.04:0,12,143 0/0:5,2:8:9.02:0,9,91 0/0:5,4:9:15.03:0,15,159 0/0:2,0:2:6.02:0,6,76 0/1:7,3:10:6.53:7,0,214 0/0:4,0:4:6.02:0,6,77 0/1:4,3:7:20.21:20,0,134 0/0:9,1:10:14.62:0,15,144 0/0:6,2:8:18.05:0,18,209 0/0:12,2:14:31.32:0,31,333 ./. 0/0:3,1:4:9.03:0,9,115 0/0:1,1:2:3.01:0,3,39 0/0:4,2:6:9.03:0,9,115 0/1:3,1:4:25.33:25,0,67 0/0:2,0:2:3.01:0,3,39 0/1:10,2:13:9.25:9,0,273 0/1:6,3:9:5.62:6,0,209 0/0:2,1:3:3.01:0,3,34 17 73915803 . G A 1216.51 . AC=2;AF=0.024;AN=84;BaseQRankSum=7.955;DP=1062;Dels=0.00;FS=17.702;HRun=0;HaplotypeScore=0.8978;InbreedingCoeff=-0.0264;MQ=58.78;MQ0=0;MQRankSum=1.010;QD=11.81;ReadPosRankSum=0.168 GT:AD:DP:GQ:PL 0/0:19,0:19:51.11:0,51,545 0/0:13,0:13:36.08:0,36,377 0/0:14,0:14:42.11:0,42,464 0/0:34,0:34:96.28:0,96,1141 0/0:23,0:23:69.19:0,69,800 0/0:19,0:19:51.14:0,51,592 0/0:22,0:22:66.17:0,66,750 0/0:17,0:17:48.11:0,48,542 0/0:30,0:30:90.22:0,90,973 0/0:21,1:22:30.91:0,31,638 0/0:34,0:34:99:0,99,1050 0/0:20,0:20:60.13:0,60,627 0/0:15,0:15:39.10:0,39,415 0/0:29,1:30:40.83:0,41,743 0/1:40,37:77:99:1017,0,924 0/1:15,11:26:99:262,0,399 0/0:20,0:20:57.13:0,57,603 0/0:12,0:12:36.09:0,36,385 0/0:33,0:33:90.23:0,90,983 0/0:37,1:38:99:0,105,1156 0/0:41,1:42:79.48:0,79,1186 0/0:37,0:37:99:0,102,1098 0/0:30,0:30:87.23:0,87,1002 0/0:21,0:21:63.18:0,63,736 0/0:16,0:17:39.12:0,39,473 0/0:9,0:9:27.07:0,27,315 0/0:18,0:18:48.12:0,48,512 0/0:26,0:26:75.19:0,75,804 0/0:19,0:19:57.14:0,57,626 0/0:18,0:18:51.12:0,51,548 0/0:22,0:22:66.15:0,66,692 0/0:37,0:37:99:0,108,1148 0/0:34,0:34:90.22:0,90,991 0/0:18,0:19:51.09:0,51,546 0/0:30,0:30:87.21:0,87,931 0/0:23,0:23:63.16:0,63,684 0/0:28,1:29:41.22:0,41,772 0/0:17,0:18:51.13:0,51,548 0/0:29,0:29:75.18:0,75,817 0/0:25,0:25:69.17:0,69,745 0/0:15,1:16:7.32:0,7,429 0/0:25,0:25:69.18:0,69,752 17 73915853 . C T 839.55 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.030;DP=2345;Dels=0.00;FS=4.675;HRun=1;HaplotypeScore=1.9534;InbreedingCoeff=-0.0120;MQ=59.15;MQ0=0;MQRankSum=-0.157;QD=15.26;ReadPosRankSum=-1.124 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,144,1781 0/0:52,0:52:99:0,141,1790 0/0:42,0:42:99:0,120,1496 0/0:77,0:77:99:0,220,2830 0/0:55,0:55:99:0,159,2069 0/0:41,0:41:99:0,111,1476 0/0:57,0:57:99:0,156,2034 0/0:51,0:51:99:0,141,1885 0/0:54,0:54:99:0,153,1909 0/0:45,0:45:99:0,126,1572 0/0:58,0:58:99:0,165,2083 0/0:48,0:48:99:0,135,1701 0/0:27,0:27:78.24:0,78,956 0/1:25,30:55:99:886,0,720 0/0:148,0:149:99:0,409,5177 0/0:54,0:54:99:0,150,1880 0/0:33,0:33:84.21:0,84,1024 0/0:49,0:49:99:0,129,1618 0/0:72,0:72:99:0,205,2558 0/0:80,1:82:99:0,229,2828 0/0:91,0:92:99:0,259,3184 0/0:57,0:57:99:0,159,1993 0/0:64,0:64:99:0,187,2475 0/0:56,0:56:99:0,163,2177 0/0:53,0:53:99:0,150,1995 0/0:39,0:39:99:0,108,1420 0/0:45,0:45:99:0,129,1616 0/0:51,0:51:99:0,147,1823 0/0:34,0:34:99:0,102,1285 0/0:45,0:45:99:0,129,1586 0/0:38,0:38:99:0,108,1358 0/0:106,0:106:99:0,295,3705 0/0:63,0:63:99:0,181,2253 0/0:39,0:39:99:0,111,1380 0/0:45,0:45:99:0,126,1553 0/0:54,0:54:99:0,153,1931 0/0:75,0:78:99:0,196,2429 0/0:49,0:50:99:0,141,1755 0/0:49,0:50:99:0,144,1770 0/0:50,0:50:99:0,138,1738 0/0:36,0:36:99:0,102,1294 0/0:49,0:49:99:0,138,1713 17 73969835 . C T 2367.94 . AC=3;AF=0.036;AN=84;BaseQRankSum=-6.132;DP=2948;Dels=0.00;FS=2.395;HRun=0;HaplotypeScore=1.5542;InbreedingCoeff=-0.0370;MQ=59.41;MQ0=0;MQRankSum=1.695;QD=11.17;ReadPosRankSum=0.747 GT:AD:DP:GQ:PL 0/0:65,0:65:99:0,178,2244 0/0:58,0:59:99:0,153,1948 0/0:54,0:54:99:0,153,1936 0/0:92,0:92:99:0,232,3124 0/0:103,0:103:99:0,277,3714 0/0:100,0:100:99:0,256,3479 0/0:70,1:71:99:0,179,2656 0/0:84,0:84:99:0,217,2936 0/1:19,28:47:99:720,0,571 0/0:52,0:52:99:0,147,1838 0/1:31,20:51:99:553,0,937 0/0:54,0:54:99:0,135,1717 0/0:45,0:45:99:0,129,1623 0/0:58,0:59:99:0,159,2012 0/0:180,0:180:99:0,442,5671 0/0:39,0:39:99:0,111,1391 0/0:69,0:69:99:0,184,2298 0/0:59,0:59:99:0,169,2112 0/0:104,0:104:99:0,268,3397 0/0:97,0:97:99:0,262,3312 0/0:87,0:88:99:0,226,2746 0/0:73,0:73:99:0,193,2396 0/1:70,44:114:99:1171,0,2260 0/0:68,0:68:99:0,169,2262 0/0:85,0:85:99:0,220,2953 0/0:69,0:69:99:0,187,2493 0/0:41,0:41:99:0,111,1427 0/0:71,0:71:99:0,184,2377 0/0:59,0:59:99:0,150,1917 0/0:60,0:60:99:0,153,1952 0/0:57,0:57:99:0,157,2018 0/0:90,0:90:99:0,223,2872 0/0:52,0:52:99:0,141,1821 0/0:63,0:63:99:0,181,2243 0/0:47,0:47:99:0,129,1630 0/0:78,0:78:99:0,214,2733 0/0:80,0:80:99:0,217,2651 0/0:59,0:59:99:0,159,2015 0/0:54,0:54:99:0,153,1940 0/0:48,0:48:99:0,138,1714 0/0:59,0:59:99:0,153,1897 0/0:49,0:49:99:0,138,1733 17 74010591 . G A 1186.58 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.493;DP=1326;Dels=0.00;FS=1.258;HRun=1;HaplotypeScore=0.8994;InbreedingCoeff=-0.0244;MQ=59.04;MQ0=0;MQRankSum=0.224;QD=13.48;ReadPosRankSum=-0.949 GT:AD:DP:GQ:PL 0/0:15,1:16:45.12:0,45,559 0/0:19,0:19:51.13:0,51,606 0/0:22,0:22:60.19:0,60,759 0/0:70,0:70:99:0,202,2657 0/0:91,0:91:99:0,262,3479 0/1:23,25:48:99:736,0,697 0/1:23,17:40:99:513,0,725 0/0:28,0:28:84.26:0,84,1082 0/0:14,0:14:39.12:0,39,496 0/0:19,0:19:54.17:0,54,671 0/0:19,0:19:54.16:0,54,667 0/0:18,0:18:54.17:0,54,670 0/0:15,0:15:42.13:0,42,529 0/0:21,0:21:60.18:0,60,745 0/0:75,0:75:99:0,205,2578 0/0:25,0:25:75.23:0,75,921 0/0:13,0:13:36.11:0,36,442 0/0:27,0:27:75.23:0,75,938 0/0:27,0:27:75.20:0,75,890 0/0:60,0:60:99:0,159,2031 0/0:33,0:34:87.28:0,87,1103 0/0:30,0:30:87.28:0,87,1097 0/0:71,0:71:99:0,193,2560 0/0:34,0:34:99:0,99,1288 0/0:51,0:51:99:0,141,1872 0/0:42,0:42:99:0,120,1553 0/0:22,0:22:60.19:0,60,753 0/0:22,0:22:66.20:0,66,819 0/0:28,0:28:78.25:0,78,985 0/0:25,0:25:72.23:0,72,917 0/0:26,0:26:78.24:0,78,967 0/0:25,0:25:69.21:0,69,866 0/0:31,0:31:87.25:0,87,1083 0/0:21,0:21:60.18:0,60,726 0/0:26,0:26:75.24:0,75,957 0/0:27,0:27:75.23:0,75,939 0/0:25,0:25:69.21:0,69,861 0/0:29,0:29:84.26:0,84,1043 0/0:29,0:29:78.22:0,78,947 0/0:17,0:17:48.15:0,48,611 0/0:15,0:16:45.13:0,45,555 0/0:28,0:28:81.24:0,81,1017 17 74014619 . G A 654.52 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.067;DP=894;Dels=0.00;FS=3.927;HRun=1;HaplotypeScore=1.2747;InbreedingCoeff=-0.0123;MQ=58.90;MQ0=0;MQRankSum=-0.820;QD=10.91;ReadPosRankSum=0.862 GT:AD:DP:GQ:PL 0/0:14,0:15:36.09:0,36,416 0/0:20,0:20:60.12:0,60,649 0/0:16,0:16:45.11:0,45,508 0/0:62,0:63:99:0,171,2065 0/0:42,0:42:99:0,117,1451 0/0:28,1:29:52.55:0,53,879 0/0:19,0:19:48.15:0,48,594 0/0:23,0:23:66.18:0,66,785 0/0:12,0:12:36.07:0,36,390 0/0:17,0:17:51.14:0,51,567 0/0:9,0:9:24.07:0,24,278 0/0:20,0:20:54.14:0,54,633 0/0:8,0:8:21.05:0,21,232 0/0:13,1:14:36.10:0,36,406 0/0:42,0:42:99:0,114,1293 0/0:28,0:28:78.18:0,78,890 0/0:7,0:7:21.05:0,21,227 0/0:13,0:13:36.11:0,36,436 0/0:20,0:20:57.16:0,57,662 0/0:29,0:29:78.18:0,78,897 0/0:26,0:26:69.19:0,69,803 0/0:24,0:24:72.15:0,72,800 0/1:35,25:60:99:701,0,970 0/0:28,0:28:81.23:0,81,976 0/0:27,0:27:81.19:0,81,925 0/0:18,0:18:45.11:0,45,514 0/0:12,0:12:33.08:0,33,361 0/0:12,0:12:33.09:0,33,378 0/0:16,0:16:45.12:0,45,500 0/0:14,0:14:36.10:0,36,430 0/0:15,0:15:42.12:0,42,476 0/0:22,0:22:60.15:0,60,671 0/0:17,0:17:48.13:0,48,546 0/0:18,0:18:51.13:0,51,572 0/0:9,0:9:27.08:0,27,310 0/0:16,0:16:45.12:0,45,518 0/0:18,0:18:48.13:0,48,548 0/0:25,0:25:66.17:0,66,741 0/0:17,0:17:45.11:0,45,505 0/0:13,0:13:39.12:0,39,476 0/0:18,0:18:51.13:0,51,577 0/0:23,0:23:63.16:0,63,718 17 74014628 . G A 9619.14 . AC=33;AF=0.393;AN=84;BaseQRankSum=6.747;DP=983;Dels=0.00;FS=3.693;HRun=0;HaplotypeScore=2.6928;InbreedingCoeff=-0.0483;MQ=58.85;MQ0=0;MQRankSum=0.171;QD=16.22;ReadPosRankSum=-0.791 GT:AD:DP:GQ:PL 0/1:8,11:19:99:313,0,147 0/0:24,0:24:60.14:0,60,667 0/0:17,0:17:48.13:0,48,548 0/0:64,0:64:99:0,172,2094 0/1:28,19:47:99:535,0,843 0/1:12,21:33:99:639,0,298 0/1:12,7:19:99:160,0,358 0/1:16,10:26:99:300,0,417 0/1:5,9:14:99:269,0,118 1/1:0,20:20:57.17:680,57,0 0/0:9,0:9:27.07:0,27,302 0/0:20,0:20:57.15:0,57,660 0/1:10,4:14:91.20:91,0,297 0/1:10,5:15:99:131,0,278 0/1:27,17:44:99:487,0,698 0/1:14,16:30:99:461,0,299 0/1:6,2:8:47.27:47,0,174 1/1:0,12:12:36.08:408,36,0 0/1:12,8:20:99:226,0,306 0/1:24,12:37:99:323,0,610 0/1:13,13:26:99:373,0,316 0/1:15,10:25:99:271,0,433 0/0:69,0:69:99:0,187,2270 0/0:33,0:33:93.27:0,93,1116 0/0:25,0:25:72.19:0,72,849 0/0:19,0:19:54.14:0,54,620 0/0:14,0:14:39.09:0,39,434 0/0:14,0:14:36.09:0,36,415 0/0:19,0:19:54.14:0,54,604 0/1:9,8:17:99:249,0,180 0/1:9,3:12:74.82:75,0,248 0/1:8,16:24:99:447,0,152 0/0:21,0:22:57.16:0,57,672 1/1:0,19:19:57.18:689,57,0 1/1:0,11:11:33.10:405,33,0 1/1:0,15:15:45.14:538,45,0 0/1:17,8:25:99:229,0,302 0/0:25,0:25:66.18:0,66,742 1/1:0,17:17:48.14:578,48,0 0/0:16,0:16:45.11:0,45,519 0/1:9,8:17:99:238,0,231 0/1:11,16:27:99:454,0,197 17 74014634 . G T 1721.44 . 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T C 19056.98 . AC=50;AF=0.595;AN=84;BaseQRankSum=-5.341;DP=1119;Dels=0.00;FS=3.088;HRun=3;HaplotypeScore=0.6683;InbreedingCoeff=-0.0872;MQ=58.93;MQ0=0;MQRankSum=-0.349;QD=19.11;ReadPosRankSum=-0.799 GT:AD:DP:GQ:PL 0/1:8,19:27:99:510,0,196 0/1:13,12:25:99:352,0,335 0/1:10,3:14:41.98:42,0,329 0/1:33,39:72:99:992,0,898 0/1:32,33:65:99:845,0,956 1/1:0,37:38:93.28:1168,93,0 0/1:13,8:21:99:239,0,401 1/1:0,37:37:99:1204,99,0 1/1:0,13:13:33.10:409,33,0 1/1:1,20:21:54.16:653,54,0 1/1:0,15:15:39.08:441,39,0 0/0:23,0:24:66.20:0,66,804 0/1:10,9:19:99:247,0,315 0/1:12,10:22:99:243,0,374 1/1:0,47:47:99:1387,120,0 1/1:0,26:26:72.19:809,72,0 0/1:7,5:12:99:137,0,182 1/1:0,12:12:36.09:399,36,0 0/1:13,14:27:99:365,0,337 0/1:13,22:35:99:584,0,355 0/1:11,14:25:99:351,0,278 0/1:15,8:23:99:210,0,368 0/1:41,35:76:99:939,0,1008 0/1:13,18:31:99:443,0,392 0/0:21,0:22:48.15:0,48,621 0/1:21,17:38:99:457,0,527 0/0:19,0:19:54.15:0,54,648 0/1:9,7:16:99:183,0,278 0/0:17,0:17:45.12:0,45,548 0/1:7,15:22:99:426,0,172 1/1:0,13:13:30.05:344,30,0 1/1:0,31:31:78.22:948,78,0 0/0:24,1:25:43.52:0,44,790 1/1:0,20:20:57.15:641,57,0 1/1:0,13:13:33.10:421,33,0 1/1:0,17:17:45.12:509,45,0 0/1:17,14:31:99:376,0,474 0/1:10,14:24:99:429,0,245 1/1:0,25:25:63.18:749,63,0 0/0:15,0:15:42.12:0,42,502 0/1:10,8:18:99:222,0,308 0/1:10,15:26:99:382,0,251 17 74068504 . G C 6.96 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.144;DP=346;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.5969;InbreedingCoeff=-0.0460;MQ=32.08;MQ0=0;MQRankSum=0.116;QD=0.87;ReadPosRankSum=1.986 GT:AD:DP:GQ:PL 0/0:4,0:4:12.02:0,12,124 0/0:8,0:8:24.06:0,24,261 0/0:2,0:2:3.01:0,3,33 0/0:7,0:7:6.02:0,6,67 0/0:7,0:7:15.04:0,15,167 0/0:14,0:15:30.08:0,30,336 0/0:18,0:18:48.07:0,48,493 0/0:13,0:13:27.08:0,27,304 0/0:2,0:2:6.01:0,6,62 0/0:5,0:5:9.02:0,9,100 0/0:6,0:6:12.01:0,12,123 0/0:7,0:7:15.04:0,15,162 0/0:8,0:8:24.04:0,24,249 0/0:6,0:6:18.05:0,18,201 0/1:5,3:8:51.83:52,0,80 0/0:7,0:7:12.03:0,12,131 0/0:4,0:4:9.02:0,9,98 0/0:3,0:3:6.01:0,6,62 0/0:3,0:3:9.02:0,9,99 0/0:24,0:24:57.13:0,57,622 0/0:10,0:10:27.08:0,27,304 0/0:11,0:11:24.04:0,24,246 0/0:14,0:14:27.06:0,27,292 0/0:9,0:9:9.02:0,9,96 0/0:14,0:14:33.07:0,33,356 0/0:9,0:9:12.03:0,12,134 0/0:2,0:3:3.01:0,3,32 0/0:11,0:11:24.05:0,24,249 0/0:5,0:5:9.02:0,9,100 0/0:8,0:8:24.04:0,24,253 0/0:4,0:4:9.02:0,9,100 0/0:24,0:24:51.11:0,51,545 0/0:10,0:10:18.03:0,18,186 0/0:4,0:4:12.03:0,12,127 0/0:5,1:6:15.03:0,15,160 0/0:7,0:7:18.05:0,18,199 0/0:5,0:5:15.04:0,15,167 0/0:8,0:8:21.05:0,21,221 0/0:11,0:11:30.08:0,30,334 0/0:7,0:7:15.04:0,15,165 0/0:4,0:4:6.02:0,6,67 0/0:5,0:5:12.03:0,12,134 17 74068508 . C T 9.82 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.384;DP=281;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.7175;InbreedingCoeff=-0.0729;MQ=33.14;MQ0=0;MQRankSum=-0.220;QD=1.64;ReadPosRankSum=0.409 GT:AD:DP:GQ:PL 0/0:4,0:4:12.03:0,12,134 0/0:3,0:3:9.02:0,9,100 0/0:1,0:1:3.01:0,3,33 0/0:8,0:8:6.02:0,6,67 0/0:7,0:7:9.02:0,9,100 0/0:13,0:13:27.07:0,27,305 0/0:15,0:15:42.08:0,42,451 0/0:10,0:10:24.07:0,24,279 0/0:2,0:2:3.01:0,3,36 0/0:4,0:4:3.01:0,3,33 0/0:6,0:6:15.04:0,15,167 0/0:7,0:7:18.05:0,18,200 0/0:5,0:5:15.04:0,15,165 0/0:5,0:5:15.04:0,15,167 0/1:4,2:6:54.83:55,0,58 0/0:6,0:6:15.04:0,15,167 0/0:3,0:3:6.02:0,6,69 0/0:3,0:3:3.01:0,3,33 0/0:3,0:3:6.02:0,6,70 0/0:23,0:23:48.10:0,48,517 0/0:7,0:7:18.05:0,18,205 0/0:9,1:10:15.04:0,15,165 0/0:10,0:10:18.05:0,18,207 0/0:10,0:10:9.02:0,9,100 0/0:9,0:9:18.05:0,18,206 0/0:6,0:6:9.02:0,9,97 0/0:5,0:5:12.03:0,12,129 0/0:10,0:10:21.05:0,21,230 0/0:5,0:5:9.02:0,9,96 0/0:5,0:5:15.03:0,15,157 0/0:4,0:4:9.02:0,9,95 0/0:21,0:21:51.13:0,51,556 0/0:6,0:6:3.01:0,3,37 0/0:3,0:3:9.02:0,9,100 0/0:2,0:2:3.01:0,3,32 0/0:5,0:5:12.03:0,12,134 0/0:1,0:1:3.01:0,3,33 0/0:9,0:9:24.07:0,24,267 0/0:6,0:6:9.02:0,9,96 0/0:6,0:6:12.03:0,12,130 0/0:4,0:4:9.02:0,9,100 0/0:3,0:3:3.01:0,3,33 17 74068543 . G A 4.55 . AC=2;AF=0.026;AN=78;BaseQRankSum=0.238;DP=206;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.6027;InbreedingCoeff=0.2926;MQ=52.42;MQ0=0;MQRankSum=0.199;QD=1.14;ReadPosRankSum=-0.276 GT:AD:DP:GQ:PL 0/0:3,0:3:9.02:0,9,98 0/0:4,0:4:12.03:0,12,132 0/0:1,0:1:3:0,3,28 0/0:13,0:13:39.10:0,39,440 0/0:6,0:6:18.05:0,18,207 0/0:12,0:12:33.04:0,33,366 0/0:2,0:2:6:0,6,65 0/0:12,0:12:33.08:0,33,365 0/0:8,0:8:15.04:0,15,172 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:5.99:0,6,54 0/0:3,0:3:9:0,9,85 ./. 0/0:2,0:2:6.02:0,6,65 0/0:6,0:6:18.04:0,18,189 0/0:2,0:2:6.01:0,6,61 0/1:1,1:2:1.76:35,3,0 0/0:3,0:3:9:0,9,87 0/0:5,0:5:12.03:0,12,132 0/0:14,0:14:30.07:0,30,335 0/0:15,0:15:36.10:0,36,406 0/0:16,0:17:36.09:0,36,403 0/0:10,0:10:27.07:0,27,306 0/0:3,0:3:9.03:0,9,114 0/0:6,0:6:15.05:0,15,181 0/0:2,0:2:6.01:0,6,61 0/1:1,1:2:1.76:33,3,0 0/0:3,0:3:9.02:0,9,96 0/0:2,0:2:6.02:0,6,67 0/0:5,0:6:15.04:0,15,163 0/0:3,0:3:9.03:0,9,103 0/0:7,0:7:18.05:0,18,204 0/0:9,0:9:18.02:0,18,178 ./. 0/0:4,0:4:9.02:0,9,98 0/0:5,0:5:15.04:0,15,172 0/0:2,0:2:3.01:0,3,33 0/0:4,0:4:12.03:0,12,135 0/0:2,0:2:6.01:0,6,60 ./. 0/0:2,0:2:6.01:0,6,63 0/0:1,0:1:3.01:0,3,32 17 74151691 . A C 865.45 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.163;DP=1732;Dels=0.00;FS=1.925;HRun=0;HaplotypeScore=1.2578;InbreedingCoeff=-0.0244;MQ=59.30;MQ0=0;MQRankSum=1.745;QD=10.96;ReadPosRankSum=-0.616 GT:AD:DP:GQ:PL 0/0:22,0:22:60.18:0,60,744 0/0:31,0:31:90.25:0,90,1074 0/0:22,0:22:60.14:0,60,716 0/0:104,0:104:99:0,283,3544 0/0:110,0:110:99:0,310,3821 0/0:71,0:71:99:0,199,2528 0/0:73,0:73:99:0,202,2538 0/0:67,0:67:99:0,181,2188 0/0:33,0:33:90.26:0,90,1091 0/0:32,0:32:93.26:0,93,1097 0/0:26,0:26:75.23:0,75,918 0/0:30,0:30:78.24:0,78,969 0/0:20,0:20:57.16:0,57,691 0/0:29,0:29:84.25:0,84,1031 0/0:78,1:80:99:0,194,2598 0/0:23,0:24:60.19:0,60,750 0/0:24,0:24:69.21:0,69,836 0/0:23,0:23:63.18:0,63,747 0/0:35,0:35:96.27:0,96,1168 0/0:45,0:46:99:0,126,1568 0/1:22,32:54:99:803,0,636 0/1:18,7:25:99:125,0,595 0/0:131,0:131:99:0,364,4550 0/0:61,0:61:99:0,175,2184 0/0:67,0:67:99:0,193,2398 0/0:70,0:70:99:0,193,2440 0/0:26,1:27:72.22:0,72,893 0/0:25,0:25:72.22:0,72,886 0/0:18,0:18:51.15:0,51,609 0/0:27,0:27:81.25:0,81,989 0/0:20,1:21:60.19:0,60,748 0/0:43,0:43:99:0,114,1408 0/0:27,0:27:75.22:0,75,905 0/0:22,0:22:66.20:0,66,804 0/0:24,0:24:72.19:0,72,840 0/0:32,0:32:93.26:0,93,1135 0/0:48,0:48:99:0,138,1676 0/0:21,0:21:60.18:0,60,724 0/0:16,0:16:45.14:0,45,552 0/0:22,0:22:66.20:0,66,807 0/0:17,0:17:48.15:0,48,602 0/0:32,0:32:87.28:0,87,1102 17 74152366 . A G 45643.89 . AC=40;AF=0.476;AN=84;BaseQRankSum=13.330;DP=3200;DS;Dels=0.00;FS=9.304;HRun=2;HaplotypeScore=1.5597;InbreedingCoeff=-0.3364;MQ=59.41;MQ0=0;MQRankSum=-0.580;QD=18.45;ReadPosRankSum=-2.872 GT:AD:DP:GQ:PL 0/0:85,0:85:99:0,235,2945 0/0:68,0:68:99:0,190,2365 0/0:55,0:55:99:0,156,1950 0/1:45,38:83:99:1099,0,1327 0/1:33,47:80:99:1479,0,1008 0/1:37,38:75:99:1074,0,1143 0/0:58,0:58:99:0,169,2216 1/1:0,75:75:99:2643,202,0 0/1:36,33:69:99:909,0,984 0/1:31,27:58:99:784,0,901 0/1:51,37:88:99:1053,0,1410 1/1:0,68:68:99:2429,193,0 0/1:27,26:53:99:740,0,837 0/1:31,41:72:99:1189,0,867 0/0:213,0:213:99:0,566,7223 0/1:30,31:61:99:965,0,831 0/1:41,40:81:99:1160,0,1272 0/0:66,1:67:99:0,147,2263 0/1:43,51:94:99:1296,0,1208 0/1:49,42:91:99:1214,0,1494 0/1:53,48:101:99:1397,0,1586 0/1:33,30:63:99:944,0,909 1/1:0,98:98:99:3734,277,0 0/1:32,27:59:99:837,0,950 0/1:38,44:82:99:1396,0,1073 0/1:31,35:66:99:1096,0,860 0/1:30,32:62:99:970,0,918 0/0:71,0:71:99:0,196,2461 0/1:38,20:58:99:602,0,1155 0/1:34,40:74:99:1194,0,963 1/1:0,54:54:99:1990,159,0 1/1:0,90:90:99:3052,238,0 0/1:31,45:76:99:1311,0,889 0/1:26,43:69:99:1263,0,769 0/1:35,49:84:99:1454,0,1045 0/1:37,40:77:99:1200,0,1079 0/0:109,0:109:99:0,289,3634 0/1:40,35:75:99:987,0,1133 0/1:39,25:64:99:757,0,1257 0/1:39,23:62:99:631,0,1191 1/1:0,50:50:99:1801,144,0 0/1:28,34:62:99:994,0,821 17 74388106 . T G 3.95 . AC=1;AF=0.012;AN=84;BaseQRankSum=-8.027;DP=897;Dels=0.00;FS=64.320;HRun=3;HaplotypeScore=0.5421;InbreedingCoeff=-0.0246;MQ=58.92;MQ0=0;MQRankSum=1.624;QD=0.26;ReadPosRankSum=-2.407 GT:AD:DP:GQ:PL 0/0:16,2:18:11.70:0,12,462 0/0:8,5:13:0.61:8,0,236 0/0:19,4:23:54.14:0,54,615 0/0:21,7:28:42.46:0,42,680 0/0:19,3:22:54.11:0,54,594 0/0:18,2:20:54.16:0,54,641 0/0:12,3:15:36.11:0,36,423 0/0:22,7:29:63.16:0,63,707 0/0:13,2:15:38.13:0,38,404 0/0:21,2:23:57.15:0,57,638 0/0:8,3:11:24.07:0,24,277 0/1:9,6:15:47.26:47,0,277 0/0:9,4:13:27.05:0,27,291 0/0:15,4:19:42.09:0,42,470 0/0:56,13:69:99:0,133,1715 0/0:19,6:25:57.15:0,57,630 0/0:19,4:23:54.14:0,54,603 0/0:14,2:16:36.08:0,36,392 0/0:22,6:28:31.63:0,32,672 0/0:30,7:38:84.18:0,84,913 0/0:25,4:29:75.21:0,75,867 0/0:13,4:17:36.11:0,36,429 0/0:27,13:40:78.22:0,78,888 0/0:12,3:15:30.09:0,30,357 0/0:14,2:16:42.10:0,42,466 0/0:12,2:14:33.07:0,33,372 0/0:15,3:18:41.47:0,41,442 0/0:13,1:14:33.08:0,33,369 0/0:8,1:9:24.07:0,24,285 0/0:16,1:17:45.13:0,45,519 0/0:14,3:17:42.13:0,42,506 0/0:29,4:33:81.21:0,81,926 0/0:15,10:25:22.44:0,22,490 0/0:4,4:9:12.03:0,12,129 0/0:16,6:22:45.12:0,45,507 0/0:13,5:18:36.11:0,36,417 0/0:16,7:23:42.12:0,42,492 0/0:9,5:14:24.07:0,24,289 0/0:19,3:23:48.13:0,48,555 0/0:19,6:25:25.61:0,26,595 0/0:19,2:21:54.16:0,54,639 0/0:12,3:15:36.10:0,36,425 17 74469185 . C T 461.78 . 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G A 3092.63 . 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C T 1057.08 . 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G A 3726.91 . 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G A 326.12 . 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G C 9406.53 . 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C T 7079.13 . AC=8;AF=0.095;AN=84;BaseQRankSum=4.482;DP=3280;Dels=0.00;FS=10.553;HRun=0;HaplotypeScore=2.0381;InbreedingCoeff=-0.1053;MQ=59.14;MQ0=0;MQRankSum=1.696;QD=12.08;ReadPosRankSum=2.125 GT:AD:DP:GQ:PL 0/0:63,0:63:99:0,150,1770 0/1:19,31:51:99:871,0,473 0/1:23,18:41:99:462,0,617 0/0:159,0:159:99:0,448,5489 0/0:144,0:144:99:0,388,4782 0/0:115,0:115:99:0,319,3891 0/0:71,0:71:99:0,196,2483 0/0:108,0:108:99:0,289,3501 0/0:55,0:55:99:0,144,1689 0/0:53,0:53:99:0,138,1640 0/0:41,0:41:96.25:0,96,1126 0/1:20,12:32:99:312,0,522 0/0:40,0:40:99:0,105,1178 0/1:34,32:66:99:831,0,866 0/0:169,0:169:99:0,406,4824 0/0:53,0:53:99:0,123,1421 0/0:58,0:58:99:0,153,1740 0/0:51,0:51:99:0,144,1600 0/0:134,0:134:99:0,322,3737 0/0:147,0:147:99:0,343,4119 0/0:120,0:121:99:0,322,3684 0/0:97,0:97:99:0,253,2922 0/1:91,68:159:99:1829,0,2613 0/0:88,0:88:99:0,232,2849 0/0:94,0:94:99:0,256,3168 0/0:77,0:78:99:0,202,2480 0/0:42,0:42:99:0,111,1290 0/0:49,0:49:99:0,141,1587 0/1:21,20:41:99:559,0,510 0/0:62,0:62:99:0,165,1887 0/0:46,0:46:99:0,114,1339 0/1:71,66:138:99:1799,0,1725 0/0:85,1:86:99:0,196,2556 0/0:48,0:48:99:0,132,1493 0/0:49,0:49:99:0,129,1506 0/0:54,0:54:99:0,144,1637 0/0:136,1:137:99:0,311,3932 0/1:39,19:58:99:417,0,1031 0/0:44,0:44:99:0,117,1345 0/0:48,1:49:95.34:0,95,1449 0/0:46,0:46:99:0,129,1444 0/0:41,0:42:99:0,105,1187 17 74928758 . C T 16551.67 . 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G A 24577.41 . 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T G 26.68 . AC=1;AF=0.012;AN=84;BaseQRankSum=-33.181;DP=5909;DS;Dels=0.00;FS=3200.000;HRun=2;HaplotypeScore=4.5343;InbreedingCoeff=-0.0121;MQ=59.42;MQ0=0;MQRankSum=0.353;QD=0.24;ReadPosRankSum=-31.716 GT:AD:DP:GQ:PL 0/0:86,28:115:99:0,106,2859 0/0:105,21:126:99:0,186,3405 0/0:74,31:106:46.69:0,47,2210 0/0:170,37:207:99:0,377,5939 0/0:138,37:175:99:0,251,4787 0/0:138,36:174:99:0,282,4704 0/0:134,34:168:99:0,291,4596 0/0:144,42:186:99:0,313,4923 0/0:86,28:114:99:0,116,2797 0/0:107,36:143:70.03:0,70,3466 0/0:80,28:108:99:0,157,2732 0/0:77,26:103:99:0,143,2484 0/0:65,15:80:74.92:0,75,2106 0/0:80,25:106:99:0,107,2697 0/0:181,60:242:99:0,143,5728 0/1:51,25:113:72.88:73,0,1581 0/0:101,34:135:72.32:0,72,3110 0/0:81,29:110:99:0,127,2713 0/0:156,40:196:99:0,253,5065 0/0:161,46:208:99:0,385,5444 0/0:123,36:159:52.76:0,53,3910 0/0:115,31:146:99:0,247,3716 0/0:187,35:222:99:0,463,6688 0/0:121,26:147:99:0,325,4052 0/0:144,29:173:99:0,335,4951 0/0:124,32:157:99:0,262,4293 0/0:73,15:88:78.12:0,78,2368 0/0:90,38:128:99:0,154,3031 0/0:63,17:80:99:0,125,2166 0/0:95,26:121:99:0,165,3173 0/0:76,19:96:99:0,99,2529 0/0:144,41:186:99:0,332,4792 0/0:122,41:163:99:0,227,4044 0/0:77,23:100:99:0,141,2689 0/0:94,31:125:63.99:0,64,2991 0/0:105,35:140:33.31:0,33,3431 0/0:141,37:178:99:0,148,4371 0/0:107,30:138:99:0,150,3424 0/0:88,21:110:84.17:0,84,2846 0/0:88,23:111:50.37:0,50,2841 0/0:80,18:98:99:0,155,2621 0/0:102,25:127:99:0,233,3492 17 75494705 . A G 17867.70 . 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G A 209.27 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.255;DP=656;Dels=0.00;FS=1.536;HRun=0;HaplotypeScore=0.3952;InbreedingCoeff=-0.0206;MQ=58.21;MQ0=0;MQRankSum=-0.074;QD=11.63;ReadPosRankSum=-0.624 GT:AD:DP:GQ:PL 0/0:7,0:7:21.06:0,21,250 0/0:11,0:11:24.08:0,24,320 0/0:8,0:8:24.07:0,24,294 0/0:38,0:38:93.26:0,93,1204 0/0:20,0:20:57.19:0,57,765 0/0:16,0:16:42.14:0,42,564 0/0:19,0:19:51.15:0,51,656 0/0:15,0:15:39.12:0,39,510 0/0:16,0:16:42.13:0,42,537 0/0:5,0:5:15.05:0,15,188 0/0:12,0:12:30.10:0,30,399 0/0:10,0:10:30.09:0,30,360 0/0:11,0:11:24.07:0,24,310 0/0:8,0:8:24.08:0,24,304 0/0:30,0:30:81.23:0,81,1003 0/0:15,0:15:39.12:0,39,499 0/0:10,0:10:27.09:0,27,345 0/0:12,0:12:27.09:0,27,366 0/0:22,0:22:54.17:0,54,678 0/0:36,0:36:81.24:0,81,1052 0/0:24,0:24:60.18:0,60,745 0/1:8,10:18:99:255,0,253 0/0:53,0:53:99:0,126,1656 0/0:16,0:16:39.13:0,39,523 0/0:16,0:16:42.12:0,42,539 0/0:25,0:25:60.19:0,60,802 0/0:2,0:2:6.02:0,6,68 0/0:4,0:4:12.04:0,12,148 0/0:6,0:6:15.05:0,15,200 0/0:14,0:14:36.11:0,36,456 0/0:13,0:13:33.09:0,33,411 0/0:31,0:31:81.25:0,81,1031 0/0:13,0:13:30.09:0,30,393 0/0:8,0:8:24.07:0,24,288 0/0:9,0:9:27.08:0,27,336 0/0:13,0:13:33.10:0,33,419 0/0:38,0:38:81.25:0,81,1028 0/0:8,0:8:24.07:0,24,289 0/0:8,0:8:24.06:0,24,266 0/0:1,0:1:3.01:0,3,32 0/0:10,0:10:27.07:0,27,323 0/0:5,0:5:15.05:0,15,191 17 75834770 . A G 4120.12 . AC=36;AF=0.439;AN=82;BaseQRankSum=0.623;DP=317;Dels=0.00;FS=14.959;HRun=1;HaplotypeScore=0.4736;InbreedingCoeff=0.1289;MQ=58.82;MQ0=0;MQRankSum=-1.634;QD=20.91;ReadPosRankSum=0.688 GT:AD:DP:GQ:PL 0/1:3,6:9:86.27:192,0,86 0/1:1,6:7:10.49:199,0,10 0/1:5,4:9:99:128,0,117 0/1:3,1:4:29.19:29,0,104 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.02:0,6,82 ./. 0/0:2,0:2:6.01:0,6,66 0/1:6,5:11:99:140,0,186 0/0:6,0:6:18.05:0,18,217 0/1:2,3:5:58.88:92,0,59 0/0:6,0:6:18.06:0,18,228 0/0:2,0:2:6.02:0,6,76 0/0:8,0:8:18.04:0,18,200 0/0:23,0:23:60.19:0,60,757 0/1:9,2:11:43.35:43,0,273 0/0:8,0:8:24.08:0,24,296 1/1:0,1:1:3.01:34,3,0 0/1:7,5:12:99:112,0,229 0/0:20,0:20:51.16:0,51,652 1/1:0,8:8:24.08:305,24,0 1/1:0,9:9:24.07:299,24,0 1/1:0,3:3:9.03:122,9,0 1/1:0,3:3:9.02:94,9,0 0/1:1,1:2:30.11:30,0,34 0/0:4,0:4:9.03:0,9,119 1/1:0,9:9:27.08:332,27,0 1/1:0,10:10:24.08:307,24,0 0/1:3,4:7:58.32:122,0,58 1/1:0,5:5:15.05:189,15,0 0/1:2,3:5:56.96:95,0,57 0/1:12,5:17:95.88:96,0,316 1/1:0,12:12:33.10:419,33,0 0/1:6,2:8:54.99:55,0,138 1/1:0,9:9:24.08:301,24,0 0/1:2,4:6:61.32:101,0,61 0/0:6,0:6:15.05:0,15,192 0/1:2,4:6:56.72:132,0,57 0/0:11,0:11:33.09:0,33,392 0/0:13,0:13:39.11:0,39,471 0/0:8,0:8:21.06:0,21,263 0/1:4,5:9:99:151,0,125 17 76094497 . A G 2331.56 . AC=3;AF=0.036;AN=84;BaseQRankSum=5.119;DP=1901;Dels=0.00;FS=3.714;HRun=0;HaplotypeScore=0.6695;InbreedingCoeff=0.6543;MQ=59.05;MQ0=0;MQRankSum=-0.546;QD=25.91;ReadPosRankSum=-0.204 GT:AD:DP:GQ:PL 0/0:34,0:34:93.29:0,93,1146 0/0:33,0:33:93.28:0,93,1130 0/0:27,0:27:81.25:0,81,1000 0/0:86,0:86:99:0,247,3124 0/0:70,0:70:99:0,211,2685 0/0:51,0:51:99:0,150,1963 0/0:32,0:32:96.30:0,96,1219 0/0:49,0:49:99:0,141,1817 0/0:30,0:30:90.26:0,90,1069 0/0:18,0:18:54.16:0,54,640 0/0:30,0:30:87.27:0,87,1057 0/0:19,0:19:51.16:0,51,639 0/0:35,0:35:93.28:0,93,1132 0/0:36,0:36:99:0,105,1293 0/0:107,0:108:99:0,274,3458 0/0:47,0:48:99:0,126,1526 0/0:28,0:28:78.22:0,78,944 0/0:41,0:41:99:0,111,1386 0/0:75,0:75:99:0,214,2622 0/0:87,0:87:99:0,238,2935 0/0:74,0:74:99:0,208,2543 0/0:47,0:47:99:0,129,1577 0/0:67,0:67:99:0,199,2529 0/0:37,0:37:99:0,108,1387 0/0:46,0:46:99:0,135,1720 0/0:33,0:33:93.30:0,93,1210 0/0:31,0:32:81.25:0,81,1009 0/0:36,0:36:99:0,105,1288 0/0:33,0:33:90.28:0,90,1120 0/1:17,17:34:99:517,0,517 0/0:36,0:36:99:0,105,1278 0/0:84,2:86:99:0,191,2842 1/1:1,55:56:99:1896,118,0 0/0:33,0:33:99:0,99,1175 0/0:27,0:27:81.25:0,81,980 0/0:34,0:34:93.29:0,93,1171 0/0:54,0:54:99:0,138,1715 0/0:38,0:38:99:0,105,1272 0/0:34,0:35:99:0,99,1210 0/0:40,0:40:99:0,117,1413 0/0:42,0:42:99:0,120,1476 0/0:43,1:44:99:0,120,1452 17 76121031 . C T 711.32 . 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G A 4045.78 . 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G A 2630.98 . 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T C 3233.06 . AC=31;AF=0.369;AN=84;BaseQRankSum=-8.081;DP=385;Dels=0.00;FS=13.416;HRun=0;HaplotypeScore=0.7325;InbreedingCoeff=0.1050;MQ=58.06;MQ0=0;MQRankSum=-1.475;QD=14.76;ReadPosRankSum=-0.891 GT:AD:DP:GQ:PL 1/1:0,6:6:15.04:171,15,0 0/0:5,1:6:15.04:0,15,172 0/1:2,3:5:58.07:78,0,58 0/1:10,5:15:99:121,0,326 0/1:7,4:11:99:114,0,228 1/1:0,6:6:18.05:210,18,0 0/1:5,3:8:80.60:81,0,149 1/1:0,8:8:21.06:250,21,0 0/1:4,5:9:99:123,0,119 0/1:4,2:6:14.65:15,0,102 0/1:3,2:5:44.15:44,0,74 0/1:7,3:10:63.74:64,0,164 1/1:0,4:4:12.03:133,12,0 0/1:1,5:6:18.08:146,0,18 0/1:10,13:24:99:347,0,270 1/1:0,8:8:21.06:232,21,0 0/0:6,0:6:15.05:0,15,188 0/0:11,0:11:33.08:0,33,380 0/0:12,0:12:30.09:0,30,369 0/0:14,0:14:42.09:0,42,474 0/0:16,0:16:39.10:0,39,463 0/1:3,6:9:85.49:107,0,85 0/0:15,0:15:45.14:0,45,547 0/0:6,0:6:15.04:0,15,176 0/0:9,0:9:27.07:0,27,318 0/0:7,0:7:21.06:0,21,255 1/1:0,10:10:27.07:297,27,0 0/1:6,6:12:99:135,0,178 1/1:0,9:9:18.04:191,18,0 0/0:10,0:10:30.09:0,30,360 0/0:7,0:7:18.05:0,18,204 0/1:8,8:16:99:191,0,240 0/1:8,5:13:99:101,0,215 0/0:2,0:2:3.01:0,3,32 0/0:7,0:7:21.05:0,21,238 0/1:4,6:10:96.90:163,0,97 0/0:13,0:14:33.09:0,33,382 0/1:1,3:4:24.95:86,0,25 0/0:5,1:6:15.05:0,15,187 0/0:11,0:11:27.07:0,27,331 0/1:3,2:5:51.40:51,0,91 0/0:7,0:7:21.05:0,21,242 17 76178751 . C T 395.08 . 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A G 3018.30 . AC=5;AF=0.060;AN=84;BaseQRankSum=-4.938;DP=2713;Dels=0.00;FS=6.777;HRun=0;HaplotypeScore=2.4132;InbreedingCoeff=-0.0633;MQ=58.98;MQ0=0;MQRankSum=5.713;QD=13.07;ReadPosRankSum=-1.050 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,105,1276 0/0:35,0:35:81.25:0,81,1037 0/0:36,0:37:99:0,99,1197 0/0:200,0:201:99:0,466,5952 0/0:160,0:161:99:0,427,5324 0/0:111,0:112:99:0,244,3212 0/0:109,0:109:99:0,277,3487 0/1:44,38:82:99:970,0,995 0/0:30,0:30:72.21:0,72,878 0/0:46,0:46:99:0,117,1448 0/1:16,26:42:99:655,0,393 0/0:41,0:41:99:0,111,1270 0/0:28,0:28:75.21:0,75,913 0/0:43,0:43:99:0,117,1425 0/0:157,0:159:99:0,382,4682 0/0:38,0:38:99:0,102,1235 0/0:26,0:26:69.22:0,69,863 0/0:34,0:34:93.27:0,93,1119 0/0:50,0:50:99:0,114,1418 0/0:76,0:76:99:0,199,2412 0/0:67,0:67:99:0,168,2071 0/0:37,0:37:93.26:0,93,1138 0/0:226,0:226:99:0,527,6716 0/0:91,0:91:99:0,208,2616 0/0:99,0:99:99:0,241,3030 0/0:89,0:89:99:0,226,2828 0/0:20,0:21:54.16:0,54,661 0/0:33,0:33:84.26:0,84,1037 0/1:15,18:33:99:417,0,402 0/0:36,0:36:87.27:0,87,1086 0/0:22,0:22:66.20:0,66,800 0/0:107,0:108:99:0,259,3263 0/0:49,0:50:99:0,129,1596 0/1:21,19:40:99:462,0,541 0/0:29,0:29:81.22:0,81,984 0/1:13,21:34:99:612,0,350 0/0:85,0:85:99:0,217,2604 0/0:56,0:56:99:0,135,1684 0/0:47,0:47:99:0,117,1451 0/0:33,0:33:84.25:0,84,1016 0/0:38,0:38:99:0,108,1288 0/0:45,0:45:99:0,120,1438 17 76456017 . C G 9123.31 . 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G A 12531.82 . AC=14;AF=0.167;AN=84;BaseQRankSum=-16.369;DP=3645;Dels=0.00;FS=4.723;HRun=0;HaplotypeScore=2.0165;InbreedingCoeff=0.3143;MQ=59.21;MQ0=0;MQRankSum=-1.221;QD=17.85;ReadPosRankSum=-1.800 GT:AD:DP:GQ:PL 0/0:75,0:75:99:0,199,2463 0/1:26,25:51:99:614,0,746 0/1:36,30:66:99:761,0,1070 0/0:162,0:162:99:0,421,5579 0/0:121,0:121:99:0,316,4226 0/0:96,0:96:99:0,238,3087 0/0:101,0:101:99:0,265,3496 0/0:102,0:102:99:0,259,3432 0/0:62,0:62:99:0,153,1951 0/0:63,0:63:99:0,175,2191 0/0:54,0:55:99:0,147,1838 1/1:0,49:49:99:1631,135,0 1/1:0,53:53:99:1667,135,0 0/1:44,27:71:99:766,0,1146 0/0:214,0:215:99:0,499,6335 0/0:65,0:65:99:0,175,2143 0/0:51,0:51:99:0,132,1662 0/0:68,0:68:99:0,168,2111 0/0:142,0:142:99:0,364,4431 0/0:144,0:144:99:0,349,4453 0/0:153,0:153:99:0,382,4662 0/0:88,0:88:99:0,226,2858 0/0:170,0:170:99:0,442,5900 0/0:90,0:90:99:0,214,2889 0/0:108,0:108:99:0,262,3489 0/0:94,1:95:99:0,235,3155 0/0:56,0:56:99:0,153,1886 0/0:59,0:59:99:0,159,1984 0/0:52,0:52:99:0,132,1648 0/0:72,0:72:99:0,190,2380 0/0:66,0:66:99:0,172,2172 0/0:132,0:132:99:0,334,4238 0/0:84,1:85:99:0,190,2783 0/1:35,31:66:99:788,0,1017 0/0:68,0:68:99:0,169,2163 0/1:28,31:59:99:800,0,754 0/1:47,52:99:99:1351,0,1177 1/1:0,80:81:99:2585,211,0 0/0:65,0:65:99:0,187,2304 0/1:26,34:60:99:921,0,709 0/1:23,24:47:99:648,0,676 0/0:62,0:62:99:0,156,1932 17 76481693 . C G 20920.73 . 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A G 74919.60 . 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C T 3410.22 . 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G A 385.72 . 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A G 15165.67 . 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C A 65382.09 . 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C T 628.21 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.687;DP=2081;Dels=0.00;FS=5.888;HRun=0;HaplotypeScore=0.8231;InbreedingCoeff=-0.0120;MQ=59.22;MQ0=0;MQRankSum=0.838;QD=14.61;ReadPosRankSum=1.157 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,108,1264 0/0:28,0:28:81.24:0,81,957 0/0:36,0:36:99:0,99,1201 0/0:79,0:80:99:0,223,2809 0/0:80,0:80:99:0,220,2840 0/0:64,0:64:99:0,175,2263 0/0:56,0:56:99:0,153,1956 0/0:66,0:66:99:0,187,2378 0/0:42,0:42:99:0,114,1349 0/0:28,0:28:75.21:0,75,862 0/0:40,0:40:99:0,117,1335 0/0:29,0:29:84.24:0,84,984 0/0:16,0:16:45.13:0,45,535 0/1:18,25:43:99:674,0,483 0/0:127,0:127:99:0,361,4259 0/0:44,0:44:99:0,114,1361 0/0:41,0:41:99:0,111,1327 0/0:32,0:32:87.25:0,87,1021 0/0:67,0:67:99:0,181,2145 0/0:86,0:86:99:0,235,2816 0/0:62,0:63:99:0,175,2048 0/0:30,0:30:81.23:0,81,960 0/0:102,0:102:99:0,271,3442 0/0:44,0:45:99:0,120,1553 0/0:48,0:48:99:0,129,1664 0/0:45,0:45:99:0,129,1676 0/0:22,0:22:63.18:0,63,755 0/0:46,0:46:99:0,123,1488 0/0:33,0:33:90.26:0,90,1078 0/0:37,0:37:99:0,102,1222 0/0:30,0:30:90.23:0,90,1052 0/0:90,0:90:99:0,241,2945 0/0:49,0:49:99:0,141,1674 0/0:43,0:43:99:0,123,1436 0/0:39,0:39:99:0,114,1315 0/0:35,0:35:93.26:0,93,1100 0/0:84,0:85:99:0,235,2788 0/0:45,0:45:99:0,126,1490 0/0:44,0:44:99:0,105,1283 0/0:34,0:34:87.25:0,87,1022 0/0:39,0:39:99:0,114,1361 0/0:34,0:34:99:0,99,1180 17 76528591 . C T 11909.08 . AC=45;AF=0.536;AN=84;BaseQRankSum=-0.461;DP=898;Dels=0.00;FS=2.791;HRun=0;HaplotypeScore=0.5217;InbreedingCoeff=0.0100;MQ=59.07;MQ0=0;MQRankSum=-0.540;QD=18.13;ReadPosRankSum=-0.435 GT:AD:DP:GQ:PL 0/1:5,9:14:99:211,0,130 1/1:0,18:18:51.13:596,51,0 0/1:5,9:14:93.57:272,0,94 0/1:22,12:34:99:300,0,622 0/0:39,0:39:99:0,99,1268 0/0:20,0:20:60.18:0,60,712 0/0:24,0:24:60.18:0,60,770 0/0:16,0:16:36.10:0,36,443 0/1:13,13:26:99:335,0,292 1/1:0,20:20:57.10:627,57,0 0/1:8,8:16:99:199,0,200 1/1:0,18:19:54.15:616,54,0 0/1:5,5:10:99:106,0,112 1/1:0,12:13:33.07:373,33,0 0/0:59,0:59:99:0,144,1692 0/1:8,8:16:99:221,0,187 0/1:7,5:12:99:118,0,165 0/1:5,12:17:99:332,0,119 0/1:11,23:34:99:617,0,290 0/1:20,21:42:99:506,0,564 1/1:0,28:31:78.24:947,78,0 1/1:0,22:22:60.17:712,60,0 0/1:23,16:39:99:420,0,661 0/1:19,2:21:15.09:15,0,521 0/0:21,0:21:60.18:0,60,741 1/1:0,15:15:36.08:427,36,0 0/1:5,11:16:99:315,0,107 0/1:8,8:16:99:189,0,220 0/1:8,5:13:99:140,0,166 1/1:0,12:12:30.08:371,30,0 1/1:0,9:9:27.06:310,27,0 0/1:26,15:42:99:394,0,554 0/1:17,11:28:99:245,0,443 0/1:10,5:15:99:134,0,259 0/0:18,1:19:16.79:0,17,541 1/1:0,16:16:48.13:543,48,0 0/0:27,0:27:78.18:0,78,880 0/0:16,0:16:48.13:0,48,538 0/1:10,1:11:3.89:4,0,303 1/1:0,14:14:42.07:453,42,0 0/1:4,10:14:94.98:308,0,95 1/1:0,18:18:48.11:555,48,0 17 76528790 . A G 8363.68 . AC=42;AF=0.500;AN=84;BaseQRankSum=13.402;DP=578;Dels=0.00;FS=2.568;HRun=0;HaplotypeScore=0.2712;InbreedingCoeff=-0.0549;MQ=58.87;MQ0=0;MQRankSum=0.664;QD=19.36;ReadPosRankSum=-2.412 GT:AD:DP:GQ:PL 0/1:8,8:16:99:229,0,215 1/1:0,6:6:18.05:221,18,0 0/1:7,5:12:99:150,0,203 0/1:7,2:9:57:57,0,195 0/0:12,0:12:36.11:0,36,431 0/0:13,0:13:39.11:0,39,473 0/0:8,0:8:21.06:0,21,250 0/0:3,0:3:9.03:0,9,112 0/1:9,6:15:99:159,0,213 1/1:0,9:9:27.08:331,27,0 0/1:13,11:24:99:341,0,350 1/1:0,11:11:33.10:410,33,0 0/0:5,0:5:15.04:0,15,176 1/1:0,11:11:33.10:409,33,0 0/0:41,0:41:99:0,99,1230 0/1:5,3:8:92.29:92,0,131 0/1:9,2:11:40.57:41,0,284 0/1:7,1:8:15.91:16,0,203 0/1:15,6:21:99:157,0,455 0/1:15,16:31:99:450,0,445 1/1:0,25:25:66.20:819,66,0 1/1:0,12:12:33.10:414,33,0 0/1:3,8:11:70.68:295,0,71 0/1:1,2:3:27.10:72,0,27 0/0:17,0:17:48.15:0,48,591 1/1:0,8:8:24.08:318,24,0 0/1:3,6:9:61.24:199,0,61 0/1:5,7:12:99:196,0,145 0/1:3,8:11:53.78:242,0,54 0/1:5,6:11:99:192,0,118 0/1:6,2:8:49.89:50,0,185 0/1:21,15:36:99:384,0,595 0/1:8,13:21:99:334,0,226 0/1:2,6:8:26.70:178,0,27 0/0:14,0:14:36.11:0,36,441 1/1:0,20:20:57.18:723,57,0 0/0:23,0:23:60.18:0,60,730 0/0:10,0:10:30.09:0,30,355 0/1:8,5:13:99:124,0,239 1/1:0,11:11:30.10:382,30,0 0/1:9,4:13:99:104,0,274 1/1:0,8:8:21.07:275,21,0 17 76533456 . G A 241.52 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.834;DP=708;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.4839;InbreedingCoeff=-0.0250;MQ=58.78;MQ0=0;MQRankSum=0.439;QD=10.50;ReadPosRankSum=0.852 GT:AD:DP:GQ:PL 0/0:17,0:17:45.11:0,45,492 0/0:14,0:14:42.08:0,42,430 0/0:21,0:21:63.14:0,63,672 0/0:22,0:23:63.18:0,63,729 0/0:25,0:26:75.20:0,75,858 0/0:9,0:9:24.06:0,24,288 0/0:7,0:7:21.06:0,21,248 0/0:23,1:24:37.85:0,38,773 0/0:17,0:17:48.13:0,48,547 0/0:11,0:11:30.07:0,30,336 0/0:16,0:16:48.10:0,48,518 0/0:13,0:13:39.09:0,39,408 0/0:11,0:11:33.08:0,33,366 0/0:7,0:7:21.06:0,21,236 0/0:38,0:38:99:0,111,1179 0/0:7,0:7:18.05:0,18,205 0/0:7,0:7:21.05:0,21,231 0/0:17,0:17:51.13:0,51,558 0/0:20,0:20:57.11:0,57,597 0/0:37,0:37:96.25:0,96,1093 0/0:26,0:26:78.17:0,78,827 0/0:16,0:16:45.09:0,45,489 0/0:23,0:23:63.16:0,63,717 0/1:7,5:12:99:150,0,205 0/0:11,0:11:33.10:0,33,389 0/1:5,6:11:99:154,0,149 0/0:20,0:20:57.15:0,57,627 0/0:15,0:15:45.12:0,45,499 0/0:11,0:11:27.07:0,27,310 0/0:11,0:11:33.08:0,33,359 0/0:15,0:15:45.09:0,45,481 0/0:32,0:32:90.18:0,90,942 0/0:16,0:16:36.10:0,36,406 0/0:19,0:19:48.13:0,48,558 0/0:13,0:13:36.08:0,36,383 0/0:20,0:20:54.13:0,54,591 0/0:28,0:28:72.18:0,72,788 0/0:10,0:10:27.07:0,27,295 0/0:17,0:17:48.12:0,48,533 0/0:10,0:10:27.05:0,27,293 0/0:16,0:16:42.11:0,42,473 0/0:13,0:13:39.10:0,39,423 17 76533555 . G T 269.79 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.047;DP=1035;Dels=0.00;FS=4.352;HRun=0;HaplotypeScore=0.5379;InbreedingCoeff=-0.0121;MQ=58.98;MQ0=0;MQRankSum=0.652;QD=12.85;ReadPosRankSum=-0.000 GT:AD:DP:GQ:PL 0/0:23,0:23:57.16:0,57,701 0/0:29,0:29:81.23:0,81,969 0/0:18,0:18:54.16:0,54,648 0/0:33,0:33:87.28:0,87,1141 0/0:40,0:40:99:0,111,1458 0/0:18,0:18:48.15:0,48,615 0/0:12,0:12:33.11:0,33,431 0/0:32,0:32:75.23:0,75,994 0/0:23,0:23:66.19:0,66,788 0/0:20,0:20:60.16:0,60,694 0/0:19,0:19:48.15:0,48,607 0/0:20,0:20:57.16:0,57,687 0/0:13,0:13:36.11:0,36,444 0/0:25,0:25:60.16:0,60,723 0/0:75,1:76:99:0,196,2361 0/0:15,0:15:42.11:0,42,503 0/0:24,0:24:66.18:0,66,774 0/0:26,0:26:72.20:0,72,873 0/0:39,0:39:99:0,99,1150 0/0:30,1:31:55.68:0,56,953 0/0:42,0:42:99:0,111,1324 0/0:19,0:19:54.15:0,54,655 0/0:34,0:34:90.27:0,90,1168 0/0:20,0:20:51.14:0,51,656 0/0:16,0:16:42.13:0,42,557 0/0:15,0:15:39.10:0,39,488 0/0:22,0:22:60.18:0,60,731 0/0:25,0:25:63.18:0,63,765 0/0:20,0:20:48.15:0,48,605 0/0:16,0:16:48.14:0,48,572 0/0:20,0:20:54.16:0,54,654 0/0:39,0:40:90.23:0,90,1099 0/0:26,0:26:63.19:0,63,786 0/0:16,0:16:48.14:0,48,563 0/0:17,0:17:51.15:0,51,605 0/1:10,11:21:99:316,0,284 0/0:35,2:37:96.26:0,96,1172 0/0:12,0:12:36.10:0,36,426 0/0:20,0:20:54.14:0,54,625 0/0:14,0:14:36.11:0,36,443 0/0:24,0:24:69.19:0,69,809 0/0:23,0:23:63.18:0,63,747 17 76535948 . T C 39325.43 . AC=66;AF=0.786;AN=84;BaseQRankSum=22.004;DP=1634;Dels=0.00;FS=2.423;HRun=0;HaplotypeScore=0.5931;InbreedingCoeff=0.0101;MQ=59.23;MQ0=0;MQRankSum=0.476;QD=26.48;ReadPosRankSum=0.157 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1330,102,0 1/1:0,31:31:84.27:1073,84,0 0/1:13,15:28:99:453,0,309 1/1:0,62:62:99:2107,154,0 0/1:35,23:58:99:721,0,941 1/1:0,42:42:99:1396,99,0 0/1:18,18:36:99:511,0,493 0/1:12,9:21:99:273,0,308 1/1:0,33:33:90.27:1125,90,0 1/1:0,41:41:96.30:1258,96,0 1/1:0,35:35:99:1279,102,0 1/1:0,39:39:99:1343,105,0 0/1:5,15:20:99:430,0,120 1/1:0,29:29:81.26:1035,81,0 0/0:97,0:97:99:0,253,3007 0/1:9,12:21:99:356,0,252 0/1:16,24:40:99:672,0,443 1/1:0,25:25:69.22:884,69,0 1/1:0,57:57:99:1935,150,0 1/1:0,57:57:99:1764,135,0 0/1:46,29:75:99:830,0,1207 0/1:29,16:45:99:421,0,769 1/1:0,57:57:99:2006,147,0 0/1:23,8:31:99:238,0,684 0/0:52,0:52:99:0,126,1577 1/1:0,37:37:96.32:1319,96,0 1/1:0,22:22:63.19:779,63,0 1/1:0,26:26:69.21:869,69,0 1/1:0,25:25:72.23:929,72,0 1/1:0,38:38:96.30:1224,96,0 1/1:0,28:28:75.22:919,75,0 1/1:0,47:47:99:1469,114,0 1/1:0,37:37:99:1257,102,0 1/1:0,32:32:81.25:1037,81,0 1/1:0,27:27:69.21:871,69,0 0/1:20,17:37:99:482,0,530 0/1:27,25:52:99:668,0,740 0/1:17,13:30:99:340,0,495 0/1:13,22:35:99:657,0,342 1/1:0,26:26:72.22:902,72,0 1/1:0,32:32:87.27:1102,87,0 1/1:0,30:30:84.27:1063,84,0 17 76798548 . TTTTTTC T 19177.93 . AC=44;AF=0.524;AN=84;BaseQRankSum=22.317;DP=1083;FS=1.772;HRun=0;HaplotypeScore=152.0931;InbreedingCoeff=0.0536;MQ=53.08;MQ0=0;MQRankSum=-9.484;QD=23.85;ReadPosRankSum=-1.632 GT:AD:DP:GQ:PL 1/1:7,10:17:30.08:537,30,0 0/1:14,6:20:99:237,0,854 0/1:18,4:22:99:155,0,1338 1/1:11,13:24:39.13:763,39,0 1/1:11,17:28:51.17:1024,51,0 1/1:9,7:16:21.07:447,21,0 0/1:16,10:26:99:521,0,779 0/1:19,3:21:99:119,0,1021 0/0:25,0:25:54.17:0,54,1725 0/1:16,7:23:99:363,0,657 0/0:33,0:33:78.26:0,78,2303 0/1:17,7:24:99:391,0,934 0/1:21,9:30:99:460,0,968 0/1:19,6:25:99:282,0,852 1/1:21,59:80:99:3126,166,0 1/1:7,13:20:39.13:755,39,0 1/1:14,14:28:42.14:788,42,0 0/1:26,1:27:6.78:7,0,1481 0/0:31,0:31:84.29:0,84,2741 0/0:33,0:33:87.29:0,87,2670 0/1:21,12:33:99:571,0,1505 0/0:23,0:23:63.21:0,63,1905 0/1:25,11:36:99:468,0,1708 0/0:23,0:23:63.21:0,63,2017 0/0:41,0:41:99:0,111,3391 0/0:28,0:26:72.24:0,72,2179 0/1:10,7:17:99:347,0,490 0/1:13,6:19:99:275,0,725 0/1:9,5:14:99:290,0,362 0/1:14,7:21:99:312,0,755 1/1:9,13:22:39.13:756,39,0 0/1:20,14:34:99:765,0,1054 0/0:20,0:20:51.16:0,51,1515 0/1:11,9:20:99:437,0,461 0/0:22,0:22:57.20:0,57,1818 1/1:11,16:27:48.16:882,48,0 1/1:10,23:33:69.19:1246,69,0 0/1:13,6:19:99:284,0,837 0/1:17,12:29:99:603,0,739 1/1:6,11:17:33.11:643,33,0 1/1:3,15:18:45.15:862,45,0 0/1:4,9:13:98.09:462,0,98 17 76969183 . G A 514.29 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.723;DP=1005;Dels=0.00;FS=1.882;HRun=0;HaplotypeScore=0.8489;InbreedingCoeff=-0.0371;MQ=58.95;MQ0=0;MQRankSum=0.538;QD=11.43;ReadPosRankSum=-0.801 GT:AD:DP:GQ:PL 0/0:25,0:25:69.21:0,69,856 0/0:11,0:11:33.10:0,33,403 0/0:21,0:21:60.18:0,60,743 0/0:40,0:41:99:0,105,1397 0/0:37,0:37:99:0,99,1239 0/0:26,0:26:66.21:0,66,859 0/0:24,0:24:60.18:0,60,794 0/0:20,0:20:48.15:0,48,635 0/0:14,0:14:42.10:0,42,503 0/0:20,0:20:51.14:0,51,635 0/0:19,0:19:57.16:0,57,686 0/0:20,0:20:48.14:0,48,585 0/0:21,0:21:54.17:0,54,684 0/0:17,0:17:39.12:0,39,498 0/0:56,0:56:99:0,147,1799 0/0:23,0:23:66.17:0,66,804 0/0:19,0:19:57.17:0,57,698 0/0:13,0:13:39.12:0,39,488 0/0:41,0:41:99:0,102,1253 0/0:47,0:47:99:0,129,1594 0/0:23,0:23:69.20:0,69,823 0/0:14,0:14:36.11:0,36,456 0/0:52,0:52:99:0,138,1818 0/0:20,0:20:54.15:0,54,714 0/0:22,0:22:63.20:0,63,822 0/0:21,0:21:57.18:0,57,738 0/0:27,0:27:72.20:0,72,886 0/0:16,0:16:39.12:0,39,511 0/0:19,0:19:57.18:0,57,731 0/1:7,9:16:99:255,0,216 0/1:12,5:17:99:135,0,335 0/0:44,0:45:99:0,114,1447 0/0:26,0:26:75.23:0,75,935 0/0:14,0:14:42.12:0,42,516 0/0:26,0:26:69.20:0,69,850 0/1:5,7:12:99:201,0,151 0/0:34,0:34:81.22:0,81,1009 0/0:23,0:23:66.19:0,66,803 0/0:12,0:12:36.11:0,36,436 0/0:17,0:17:42.14:0,42,555 0/0:19,0:19:51.14:0,51,638 0/0:15,0:15:45.12:0,45,537 17 76988785 . G A 1528.12 . AC=5;AF=0.060;AN=84;BaseQRankSum=6.087;DP=1033;Dels=0.00;FS=2.113;HRun=0;HaplotypeScore=0.5643;InbreedingCoeff=-0.0634;MQ=58.99;MQ0=0;MQRankSum=0.775;QD=11.85;ReadPosRankSum=1.279 GT:AD:DP:GQ:PL 0/0:22,0:22:66.17:0,66,732 0/0:14,0:14:42.12:0,42,480 0/0:15,0:15:45.13:0,45,531 0/0:32,0:32:90.26:0,90,1073 0/0:23,0:23:66.19:0,66,781 0/0:33,0:33:78.18:0,78,931 0/1:14,10:24:99:266,0,417 0/0:20,0:20:60.17:0,60,704 0/0:16,0:16:42.11:0,42,476 0/0:14,0:14:42.11:0,42,473 0/0:19,0:19:51.12:0,51,580 0/0:8,0:8:24.06:0,24,251 0/0:16,0:16:45.11:0,45,480 0/0:21,0:21:57.14:0,57,641 0/0:68,0:70:99:0,186,2091 0/0:13,0:13:36.09:0,36,394 0/0:21,0:21:57.15:0,57,636 0/0:24,0:24:69.17:0,69,762 0/0:34,0:34:99:0,99,1100 0/0:59,0:59:99:0,153,1711 0/1:18,24:42:99:716,0,408 0/1:20,11:31:99:322,0,453 0/0:35,0:35:93.29:0,93,1155 0/0:27,0:27:72.22:0,72,880 0/0:29,0:29:72.21:0,72,878 0/0:22,0:22:66.19:0,66,773 0/0:18,0:18:51.13:0,51,564 0/0:17,0:17:51.13:0,51,559 0/0:17,0:17:45.12:0,45,503 0/0:22,0:22:63.17:0,63,722 0/1:10,9:19:99:209,0,261 0/0:52,0:52:99:0,138,1557 0/0:21,0:21:60.16:0,60,687 0/0:14,0:14:39.10:0,39,433 0/0:29,0:29:81.19:0,81,871 0/0:12,0:13:33.09:0,33,359 0/0:35,0:35:99:0,99,1082 0/0:20,0:20:57.13:0,57,607 0/0:19,0:19:57.15:0,57,618 0/0:19,0:19:57.13:0,57,604 0/0:20,1:21:28.79:0,29,635 0/1:8,4:13:99:112,0,190 17 76988803 . C T 100.42 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.612;DP=882;Dels=0.00;FS=10.355;HRun=2;HaplotypeScore=0.8719;InbreedingCoeff=-0.0135;MQ=58.96;MQ0=0;MQRankSum=0.552;QD=6.69;ReadPosRankSum=-3.132 GT:AD:DP:GQ:PL 0/0:16,0:16:48.15:0,48,610 0/0:12,0:12:33.08:0,33,386 0/1:8,7:15:99:147,0,196 0/0:25,0:25:63.21:0,63,862 0/0:24,0:24:57.16:0,57,744 0/0:30,0:30:75.23:0,75,959 0/0:22,0:22:57.18:0,57,755 0/0:20,0:20:45.13:0,45,580 0/0:12,1:13:33.10:0,33,417 0/0:16,0:16:42.13:0,42,537 0/0:16,0:16:42.12:0,42,507 0/0:10,0:10:21.06:0,21,263 0/0:11,1:12:9.39:0,9,341 0/0:15,0:15:42.09:0,42,476 0/0:56,0:56:99:0,156,1930 0/0:15,0:15:39.12:0,39,483 0/0:15,0:15:33.11:0,33,423 0/0:21,0:21:57.17:0,57,711 0/0:34,0:34:93.29:0,93,1160 0/0:53,0:53:99:0,135,1651 0/0:33,0:33:81.24:0,81,1000 0/0:26,0:26:69.21:0,69,859 0/0:29,0:29:75.25:0,75,1010 0/0:17,0:17:51.15:0,51,656 0/0:28,0:28:69.19:0,69,874 0/0:15,0:15:42.14:0,42,558 0/0:17,0:17:39.12:0,39,493 0/0:15,0:15:42.13:0,42,517 0/0:14,0:14:33.10:0,33,402 0/0:17,0:17:42.13:0,42,534 0/0:19,0:19:51.13:0,51,614 0/0:42,1:43:99:0,117,1469 0/0:16,0:16:42.13:0,42,516 0/0:10,0:10:27.07:0,27,314 0/0:26,0:26:66.16:0,66,792 0/0:11,0:11:30.10:0,30,380 0/0:31,0:31:78.20:0,78,931 0/0:16,0:16:42.13:0,42,527 0/0:19,1:20:42.13:0,42,518 0/0:16,0:16:45.13:0,45,547 0/0:14,0:14:36.12:0,36,459 0/0:9,0:9:24.07:0,24,296 17 76988807 . A C 35.95 . AC=7;AF=0.083;AN=84;BaseQRankSum=-16.095;DP=1052;Dels=0.00;FS=276.291;HRun=2;HaplotypeScore=0.7863;InbreedingCoeff=-0.1303;MQ=59.05;MQ0=0;MQRankSum=-0.078;QD=0.21;ReadPosRankSum=-10.251 GT:AD:DP:GQ:PL 0/0:16,4:20:18.44:0,18,518 0/0:9,3:12:24.07:0,24,291 0/0:10,5:15:27.07:0,27,308 0/1:20,15:35:14.37:14,0,587 0/0:21,8:29:54.17:0,54,664 0/0:21,11:32:24.92:0,25,669 0/0:14,10:24:42.11:0,42,504 0/0:14,12:26:42.13:0,42,521 0/0:11,4:15:0.58:8,0,287 0/1:13,6:19:30.34:30,0,395 0/0:13,6:19:39.10:0,39,441 0/0:6,7:13:15.05:0,15,182 0/0:12,4:16:33.08:0,33,391 0/1:9,6:15:25.10:25,0,284 0/0:49,22:71:66.33:0,66,1552 0/0:14,3:17:42.13:0,42,503 0/1:12,6:18:17.08:17,0,371 0/0:18,3:21:54.15:0,54,633 0/0:28,4:32:78.24:0,78,944 0/0:42,27:69:99:0,99,1348 0/0:31,8:39:35.02:0,35,995 0/0:21,12:33:57.18:0,57,699 0/0:24,12:36:3.08:0,3,756 0/0:10,8:18:2.07:2,0,345 0/0:22,11:33:6.85:0,7,611 0/0:12,9:21:33.10:0,33,413 0/0:11,9:20:5.16:0,5,299 0/0:11,3:14:33.10:0,33,407 0/0:10,8:18:27.08:0,27,322 0/0:11,8:19:9.43:0,9,376 0/0:14,8:22:38.47:0,38,434 0/0:40,13:53:99:0,105,1246 0/1:14,12:26:13.18:13,0,380 0/0:7,5:12:21.05:0,21,236 0/0:21,6:27:2.30:0,2,659 0/0:9,5:14:24.08:0,24,299 0/1:23,12:35:27.35:27,0,758 0/0:15,6:21:11.53:0,12,439 0/1:15,9:24:12.14:12,0,421 0/0:13,5:18:38.14:0,38,428 0/0:13,5:19:36.11:0,36,434 0/0:8,4:12:24.07:0,24,280 17 77073776 . A T 15440.92 . AC=8;AF=0.095;AN=84;BaseQRankSum=4.510;DP=5554;DS;Dels=0.00;FS=0.661;HRun=0;HaplotypeScore=2.3453;InbreedingCoeff=-0.1053;MQ=59.53;MQ0=0;MQRankSum=-0.267;QD=12.41;ReadPosRankSum=1.765 GT:AD:DP:GQ:PL 0/0:80,0:80:99:0,223,2755 0/0:108,0:108:99:0,268,3377 0/0:81,0:82:99:0,208,2609 0/0:250,0:250:99:0,656,8286 0/0:237,0:237:99:0,611,7872 0/1:105,90:195:99:2452,0,2851 0/1:103,84:187:99:2223,0,2808 0/0:226,0:226:99:0,569,7276 0/0:106,0:106:99:0,286,3543 0/0:85,0:85:99:0,226,2809 0/0:73,0:73:99:0,187,2336 0/0:113,0:114:99:0,289,3651 0/1:48,34:82:99:879,0,1349 0/0:94,0:94:99:0,259,3185 0/0:243,0:243:99:0,635,7861 0/0:100,0:100:99:0,268,3323 0/0:102,0:102:99:0,271,3354 0/0:79,0:81:99:0,226,2766 0/0:200,0:200:99:0,503,6351 0/0:178,0:178:99:0,451,5709 0/0:201,0:201:99:0,503,6380 0/0:114,0:114:99:0,286,3554 0/1:124,126:250:99:3528,0,3385 0/0:167,0:167:99:0,436,5588 0/1:103,87:191:99:2264,0,2846 0/0:183,0:183:99:0,469,6006 0/1:34,31:65:99:879,0,946 0/1:51,41:92:99:1123,0,1445 0/0:78,0:78:99:0,199,2519 0/0:87,0:87:99:0,238,2936 0/0:93,0:93:99:0,256,3183 0/1:103,78:181:99:2093,0,2640 0/0:112,0:113:99:0,277,3489 0/0:87,0:87:99:0,229,2821 0/0:107,0:107:99:0,277,3478 0/0:89,0:89:99:0,241,2992 0/0:189,0:189:99:0,485,6106 0/0:68,0:68:99:0,181,2209 0/0:102,0:102:99:0,289,3516 0/0:96,0:96:99:0,250,3142 0/0:84,1:85:99:0,198,2788 0/0:92,0:92:99:0,244,3027 17 77073901 . G A 1474.01 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.668;DP=1632;Dels=0.00;FS=0.699;HRun=0;HaplotypeScore=1.0301;InbreedingCoeff=-0.0244;MQ=59.24;MQ0=0;MQRankSum=-1.275;QD=13.40;ReadPosRankSum=2.613 GT:AD:DP:GQ:PL 0/0:28,0:28:78.22:0,78,950 0/0:26,0:26:72.17:0,72,858 0/0:25,0:25:75.21:0,75,890 0/0:86,0:86:99:0,244,3075 0/0:76,0:76:99:0,220,2760 0/0:38,0:38:99:0,102,1314 0/0:34,0:34:96.28:0,96,1248 0/0:45,1:46:81.80:0,82,1495 0/0:25,0:25:72.19:0,72,867 0/0:31,0:31:78.22:0,78,955 0/0:27,0:27:78.21:0,78,916 0/0:44,0:44:99:0,120,1468 0/0:24,0:24:60.16:0,60,722 0/0:27,0:27:69.22:0,69,854 0/1:36,46:83:99:1285,0,988 0/1:18,9:27:99:252,0,530 0/0:35,0:35:99:0,99,1171 0/0:29,0:29:78.22:0,78,948 0/0:51,0:52:99:0,141,1697 0/0:66,0:68:99:0,181,2198 0/0:61,0:61:99:0,178,2143 0/0:42,0:42:99:0,117,1389 0/0:86,0:86:99:0,244,3115 0/0:35,0:35:87.28:0,87,1142 0/0:42,0:42:99:0,123,1597 0/0:36,0:37:99:0,105,1328 0/0:29,0:29:78.24:0,78,984 0/0:28,0:28:81.24:0,81,982 0/0:19,0:19:51.15:0,51,626 0/0:21,0:21:57.16:0,57,669 0/0:26,0:26:72.21:0,72,848 0/0:46,1:47:98.78:0,99,1517 0/0:30,1:31:87.26:0,87,1061 0/0:28,0:29:81.25:0,81,1010 0/0:28,0:28:81.24:0,81,986 0/0:33,0:33:93.27:0,93,1121 0/0:61,0:61:99:0,162,1899 0/0:15,0:15:39.09:0,39,460 0/0:35,0:35:99:0,99,1211 0/0:24,0:24:69.19:0,69,799 0/0:41,0:41:99:0,117,1408 0/0:31,0:31:90.23:0,90,1065 17 77073941 . T C 2320.08 . AC=8;AF=0.095;AN=84;BaseQRankSum=-8.356;DP=1095;Dels=0.00;FS=2.804;HRun=0;HaplotypeScore=0.8229;InbreedingCoeff=-0.1054;MQ=59.30;MQ0=0;MQRankSum=1.650;QD=11.43;ReadPosRankSum=-1.433 GT:AD:DP:GQ:PL 0/0:21,0:21:54.17:0,54,685 0/0:19,0:19:54.15:0,54,647 0/0:20,0:20:60.17:0,60,700 0/0:47,0:47:99:0,135,1676 0/0:42,0:42:99:0,126,1557 0/1:19,6:25:98.79:99,0,617 0/1:13,13:26:99:349,0,414 0/0:28,0:28:81.25:0,81,1003 0/0:18,0:18:51.13:0,51,601 0/0:27,0:27:69.21:0,69,858 0/0:22,0:22:54.15:0,54,680 0/0:28,0:28:75.23:0,75,927 0/1:10,8:18:99:152,0,311 0/0:15,0:15:45.13:0,45,540 0/0:67,0:67:99:0,178,2162 0/0:30,0:30:84.25:0,84,995 0/0:25,0:25:66.19:0,66,816 0/0:20,0:20:57.15:0,57,673 0/0:35,0:35:99:0,99,1204 0/0:56,0:56:99:0,144,1808 0/0:44,0:44:99:0,123,1505 0/0:21,0:21:63.19:0,63,759 0/1:19,22:41:99:587,0,579 0/0:21,0:21:60.18:0,60,752 0/1:13,16:29:99:451,0,369 0/0:21,0:21:63.19:0,63,762 0/1:6,9:15:99:220,0,184 0/1:16,11:27:99:237,0,474 0/0:9,0:9:24.07:0,24,298 0/0:15,0:15:45.14:0,45,546 0/0:17,0:17:51.16:0,51,617 0/1:9,13:22:99:347,0,269 0/0:31,0:31:81.25:0,81,999 0/0:17,0:17:48.15:0,48,598 0/0:21,0:21:60.17:0,60,714 0/0:22,0:22:63.19:0,63,768 0/0:42,0:42:99:0,108,1355 0/0:8,0:8:24.07:0,24,285 0/0:28,0:28:78.25:0,78,968 0/0:19,0:19:54.17:0,54,667 0/0:20,0:20:54.16:0,54,660 0/0:16,0:16:48.15:0,48,588 17 77076302 . G A 4018.98 . AC=7;AF=0.083;AN=84;BaseQRankSum=7.191;DP=2162;Dels=0.00;FS=3.198;HRun=0;HaplotypeScore=1.0195;InbreedingCoeff=-0.0909;MQ=59.32;MQ0=0;MQRankSum=0.409;QD=12.72;ReadPosRankSum=1.169 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,171,1962 0/0:39,0:39:99:0,105,1212 0/0:34,0:34:93.25:0,93,1082 0/0:81,0:81:99:0,217,2703 0/0:60,0:60:99:0,165,2050 0/1:23,15:38:99:376,0,662 0/1:28,20:48:99:540,0,805 0/0:56,0:56:99:0,150,1866 0/0:42,0:42:99:0,114,1325 0/0:42,0:42:99:0,114,1334 0/0:47,0:47:99:0,129,1482 0/0:46,0:46:99:0,132,1532 0/1:16,19:35:99:567,0,434 0/0:46,0:46:99:0,132,1467 0/0:134,0:134:99:0,355,4190 0/0:51,0:51:99:0,144,1627 0/0:42,0:42:99:0,120,1377 0/0:37,0:37:99:0,108,1218 0/0:64,0:64:99:0,181,2121 0/0:89,0:90:99:0,247,2824 0/0:52,0:52:99:0,138,1627 0/0:52,0:52:99:0,141,1656 0/1:36,31:67:99:850,0,1069 0/0:34,0:34:90.26:0,90,1131 0/1:28,27:55:99:801,0,760 0/0:60,0:60:99:0,150,1945 0/1:19,15:34:99:430,0,547 0/1:22,17:39:99:455,0,643 0/0:30,0:30:87.25:0,87,1030 0/0:39,0:39:99:0,111,1280 0/0:43,0:43:99:0,120,1399 0/0:83,0:84:99:0,223,2546 0/0:60,0:60:99:0,150,1773 0/0:37,0:37:99:0,108,1239 0/0:48,0:48:99:0,138,1562 0/0:61,0:61:99:0,174,2019 0/0:53,0:54:99:0,144,1695 0/0:37,0:37:99:0,111,1246 0/0:48,0:48:99:0,135,1539 0/0:39,0:39:99:0,111,1271 0/0:44,2:46:52.37:0,52,1331 0/0:50,0:50:99:0,132,1520 17 77076382 . T TG 69.06 . AC=5;AF=0.060;AN=84;BaseQRankSum=-1.755;DP=2380;FS=1128.188;HRun=2;HaplotypeScore=153.3620;InbreedingCoeff=-0.0998;MQ=57.22;MQ0=0;MQRankSum=-0.477;QD=0.21;ReadPosRankSum=-13.768 GT:AD:DP:GQ:PL 0/0:54,0:54:35.24:0,35,1215 0/0:41,0:41:13.90:0,14,939 0/0:53,8:61:18.91:0,19,1393 0/1:84,0:84:73.96:74,0,1795 0/0:80,1:81:92.03:0,92,1896 0/0:63,0:62:76.06:0,76,1571 0/0:54,0:53:43.02:0,43,1113 0/0:60,0:60:13.44:0,13,1340 0/1:38,9:47:11.20:11,0,1089 0/0:35,0:35:53.33:0,53,928 0/0:46,0:46:9.47:0,9,843 0/0:44,1:45:10.35:0,10,853 0/0:42,1:43:34.22:0,34,948 0/0:45,0:45:64.33:0,64,1045 0/0:152,0:152:99:0,114,3015 0/0:52,0:52:70.96:0,71,1217 0/0:44,0:44:0.70:8,0,787 0/0:39,0:39:72.21:0,72,883 0/0:70,0:70:99:0,121,1704 0/0:85,0:85:68.99:0,69,1648 0/0:59,0:59:0.83:0,1,1072 0/0:53,0:53:38.01:0,38,1058 0/1:85,0:85:30.23:30,0,1762 0/0:47,0:47:22.41:0,22,1032 0/0:53,0:52:79.60:0,80,1328 0/0:51,0:46:60.52:0,61,1065 0/0:29,0:29:2.48:0,2,627 0/1:58,0:58:8.03:8,0,1001 0/0:40,10:50:3.23:0,3,882 0/0:60,0:60:56.32:0,56,1402 0/0:40,0:40:12.49:0,12,943 0/0:79,0:79:99:0,110,1675 0/0:67,0:67:38.17:0,38,1216 0/0:56,0:56:53.65:0,54,1291 0/0:40,0:40:0.74:0,1,903 0/0:64,0:64:37.77:0,38,1520 0/0:62,0:62:31.68:0,32,1253 0/0:39,0:39:21.76:0,22,790 0/1:50,0:50:41.12:41,0,943 0/0:44,0:44:14.58:0,15,1020 0/0:41,0:41:31.46:0,31,949 0/0:52,0:52:41.79:0,42,1164 17 77076385 . T G 90.52 . AC=5;AF=0.060;AN=84;BaseQRankSum=-12.954;DP=2168;Dels=0.00;FS=985.032;HRun=2;HaplotypeScore=1.9702;InbreedingCoeff=-0.0863;MQ=58.77;MQ0=0;MQRankSum=-1.675;QD=0.33;ReadPosRankSum=-13.177 GT:AD:DP:GQ:PL 0/0:39,12:51:52.49:0,52,1279 0/0:27,11:38:23.83:0,24,891 0/0:41,7:48:99:0,120,1427 0/1:60,25:85:70.10:70,0,1921 0/0:56,17:73:81.94:0,82,1951 0/0:46,14:60:61.74:0,62,1528 0/0:38,11:49:6.83:0,7,1108 0/0:46,13:59:61.76:0,62,1457 0/0:34,7:41:24.51:0,25,1136 0/0:28,6:34:54.76:0,55,975 0/0:27,14:41:25.93:0,26,895 0/0:27,10:37:0.49:9,0,856 0/0:31,12:43:2.23:0,2,945 0/0:31,7:38:89.64:0,90,1055 0/0:102,33:135:99:0,186,3257 0/0:36,9:45:52.32:0,52,1239 0/1:29,12:41:38.38:38,0,881 0/0:25,7:32:75.19:0,75,884 0/0:48,12:60:99:0,141,1647 0/0:58,21:79:97.54:0,98,1882 0/0:35,13:48:8.78:0,9,1035 0/0:33,17:50:65.81:0,66,1072 0/1:57,20:77:42.28:42,0,1834 0/0:31,10:41:60.25:0,60,1061 0/0:37,14:51:87.67:0,88,1337 0/0:29,13:42:53.29:0,53,1030 0/1:18,6:24:9.42:9,0,594 0/0:35,16:51:15.23:0,15,1084 0/0:30,8:38:60.56:0,61,1007 0/0:47,12:59:99:0,113,1545 0/0:28,9:37:53.16:0,53,913 0/0:51,25:76:99:0,144,1763 0/0:38,25:63:42.07:0,42,1191 0/0:41,12:53:77.89:0,78,1314 0/0:33,7:40:60.65:0,61,1052 0/0:48,16:64:55.58:0,56,1564 0/0:43,13:56:25.11:0,25,1373 0/0:25,9:34:17.19:0,17,839 0/1:32,14:46:19.90:20,0,1004 0/0:33,11:44:6.89:0,7,1051 0/0:31,7:38:86.89:0,87,954 0/0:36,11:47:71.43:0,71,1189 17 77076440 . G T 14333.29 . AC=24;AF=0.286;AN=84;BaseQRankSum=-3.677;DP=1849;Dels=0.00;FS=7.257;HRun=0;HaplotypeScore=1.0988;InbreedingCoeff=0.0667;MQ=57.82;MQ0=0;MQRankSum=-0.416;QD=18.33;ReadPosRankSum=-0.890 GT:AD:DP:GQ:PL 0/1:17,29:46:99:909,0,372 1/1:0,37:37:96.30:1191,96,0 0/1:16,19:35:99:548,0,426 0/0:70,0:70:99:0,175,2249 0/0:40,1:41:75.20:0,75,1313 0/0:42,0:42:99:0,108,1373 0/0:36,0:36:99:0,102,1281 0/0:46,0:46:99:0,114,1430 0/1:22,17:39:99:516,0,610 0/1:20,18:38:99:456,0,617 0/1:22,14:36:99:401,0,657 0/0:33,0:33:87.22:0,87,1016 0/0:40,0:40:96.24:0,96,1173 0/0:48,0:48:99:0,123,1441 0/0:122,1:123:99:0,331,4044 0/0:44,0:44:99:0,117,1367 0/0:39,0:39:99:0,99,1185 1/1:0,31:31:87.27:1076,87,0 1/1:0,42:42:99:1345,114,0 0/1:40,40:80:99:1142,0,1081 0/0:54,1:55:99:0,147,1706 0/0:37,0:37:99:0,99,1180 0/0:57,0:58:99:0,153,1943 0/1:20,14:34:99:370,0,580 0/1:15,21:36:99:656,0,423 0/0:36,0:36:93.26:0,93,1159 0/1:5,14:19:99:450,0,100 0/1:18,15:33:99:386,0,551 0/1:20,19:39:99:532,0,516 0/0:48,0:48:99:0,129,1532 0/1:17,16:33:99:449,0,459 0/0:57,0:57:99:0,156,1900 0/0:56,0:56:99:0,153,1839 0/1:12,17:29:99:523,0,323 0/1:15,22:37:99:639,0,383 0/1:18,31:49:99:932,0,451 0/1:31,27:58:99:806,0,820 1/1:0,30:30:84.24:1006,84,0 0/0:36,0:36:99:0,99,1156 0/0:41,0:41:99:0,117,1379 0/0:38,0:39:99:0,108,1305 0/0:41,1:42:86.33:0,86,1366 17 77079576 . A G 1343.10 . 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G A 10282.26 . AC=31;AF=0.369;AN=84;BaseQRankSum=-11.973;DP=1138;Dels=0.00;FS=3.776;HRun=0;HaplotypeScore=0.9776;InbreedingCoeff=-0.0738;MQ=59.03;MQ0=0;MQRankSum=0.428;QD=17.64;ReadPosRankSum=-1.134 GT:AD:DP:GQ:PL 0/1:9,5:14:99:137,0,285 0/1:10,6:16:99:136,0,285 0/0:14,0:14:39.12:0,39,483 0/0:77,0:78:99:0,208,2670 0/0:77,0:77:99:0,208,2713 0/0:45,0:45:99:0,117,1524 0/0:35,0:35:96.30:0,96,1264 0/1:19,19:38:99:548,0,583 0/1:13,5:18:99:122,0,405 0/0:16,0:16:48.14:0,48,571 0/1:10,8:18:99:224,0,304 0/1:11,7:18:99:192,0,326 0/1:6,5:11:99:146,0,144 0/1:17,3:20:35.02:35,0,508 0/1:33,26:60:99:758,0,881 0/1:7,12:19:99:368,0,192 0/1:8,12:20:99:347,0,230 0/1:6,6:12:99:146,0,182 0/0:33,0:34:96.27:0,96,1131 0/1:16,25:41:99:747,0,428 0/0:33,0:33:90.25:0,90,1080 0/0:20,0:20:57.17:0,57,688 0/0:79,0:79:99:0,223,2853 1/1:0,19:20:54.16:644,54,0 1/1:0,39:39:99:1291,111,0 0/1:18,20:38:99:536,0,597 0/1:3,8:11:80.78:245,0,81 0/1:6,11:17:99:308,0,156 0/1:5,12:17:99:368,0,126 1/1:0,21:21:63.18:739,63,0 1/1:0,11:11:30.09:361,30,0 0/0:33,0:33:84.25:0,84,1021 0/1:12,11:23:99:321,0,359 1/1:0,17:17:51.12:591,51,0 0/1:14,13:27:99:366,0,407 0/1:5,14:19:99:411,0,129 0/0:31,0:31:84.18:0,84,965 0/1:9,9:18:99:199,0,274 0/0:12,0:12:30.09:0,30,365 0/0:19,0:19:51.16:0,51,636 0/0:12,0:12:33.10:0,33,415 0/0:17,0:17:51.13:0,51,602 17 77987239 . C T 207.34 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.839;DP=300;Dels=0.00;FS=1.319;HRun=1;HaplotypeScore=0.1068;InbreedingCoeff=-0.0518;MQ=58.85;MQ0=0;MQRankSum=0.669;QD=14.81;ReadPosRankSum=-1.672 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,297 0/0:6,0:6:15.05:0,15,201 0/0:4,0:4:12.04:0,12,154 0/0:12,0:12:30.09:0,30,388 0/0:10,0:10:30.10:0,30,389 0/0:8,0:8:24.07:0,24,307 0/0:12,0:12:30.05:0,30,363 0/0:10,0:10:30.09:0,30,384 0/0:4,0:4:12.04:0,12,154 0/0:6,0:6:15.05:0,15,193 0/0:3,0:3:9.03:0,9,113 0/0:5,0:5:15.05:0,15,187 0/0:2,0:2:6.02:0,6,76 0/1:2,5:7:55.32:155,0,55 0/0:16,0:16:42.13:0,42,522 0/0:2,0:2:6.02:0,6,69 0/0:5,0:5:15.04:0,15,181 0/0:7,0:7:21.06:0,21,254 0/0:9,0:9:24.07:0,24,293 0/0:18,0:18:54.17:0,54,676 0/0:9,0:9:24.07:0,24,296 0/0:6,0:6:15.04:0,15,181 0/0:17,0:17:42.13:0,42,551 0/0:10,0:10:27.06:0,27,343 0/0:9,0:9:27.09:0,27,369 0/0:8,0:8:24.08:0,24,325 0/0:3,0:3:9.03:0,9,108 0/0:3,0:3:9.03:0,9,112 0/0:10,0:10:27.08:0,27,336 0/0:4,0:4:12.04:0,12,148 0/0:1,0:1:3.01:0,3,37 0/0:10,0:10:24.08:0,24,312 0/0:13,0:13:39.12:0,39,487 0/0:3,0:3:9.03:0,9,105 0/0:5,0:5:15.05:0,15,192 0/0:3,0:3:9.02:0,9,104 0/0:7,0:7:15.05:0,15,186 0/0:1,0:1:3.01:0,3,39 0/1:3,4:7:94.67:114,0,95 0/0:4,0:4:12.04:0,12,153 0/0:5,0:5:15.05:0,15,188 0/0:8,0:8:24.08:0,24,306 17 78055455 . C G 965.61 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.615;DP=1643;Dels=0.00;FS=5.287;HRun=0;HaplotypeScore=1.3421;InbreedingCoeff=-0.0244;MQ=59.00;MQ0=0;MQRankSum=1.537;QD=11.92;ReadPosRankSum=-1.950 GT:AD:DP:GQ:PL 0/0:24,0:24:66.20:0,66,795 0/0:36,0:36:99:0,105,1240 0/0:33,0:33:84.20:0,84,995 0/0:49,0:49:99:0,120,1536 0/0:45,0:45:99:0,129,1660 0/0:40,0:40:99:0,114,1469 0/0:42,0:43:99:0,108,1427 0/0:33,0:33:90.27:0,90,1122 0/0:30,0:30:81.22:0,81,973 0/0:27,0:27:69.19:0,69,831 0/0:29,0:29:78.21:0,78,950 0/0:27,0:27:63.20:0,63,786 0/0:25,0:25:66.18:0,66,767 0/0:25,0:27:66.19:0,66,792 0/0:103,0:104:99:0,268,3225 0/0:33,0:33:84.25:0,84,1011 0/0:31,0:31:75.23:0,75,930 0/0:36,0:36:99:0,99,1208 0/0:59,0:61:99:0,147,1733 0/0:68,0:68:99:0,190,2273 0/0:55,0:56:99:0,126,1545 0/0:47,0:47:99:0,129,1531 0/0:59,0:59:99:0,156,2036 0/0:24,0:24:63.20:0,63,810 0/0:36,0:36:99:0,102,1306 0/0:35,0:35:81.25:0,81,1059 0/0:29,0:29:78.20:0,78,931 0/0:39,0:39:99:0,102,1254 0/0:34,0:34:87.26:0,87,1069 0/0:35,0:35:96.28:0,96,1173 0/0:23,0:23:60.19:0,60,735 0/0:53,1:54:99:0,109,1710 0/0:48,0:48:99:0,123,1481 0/0:35,0:35:99:0,99,1204 0/0:33,0:33:84.24:0,84,1008 0/0:45,0:45:99:0,117,1427 0/1:32,27:59:99:746,0,852 0/0:29,0:29:78.19:0,78,913 0/1:11,11:22:99:282,0,292 0/0:33,0:33:84.24:0,84,1006 0/0:38,0:39:99:0,102,1219 0/0:28,0:28:81.24:0,81,984 17 78059821 . T C 2175.12 . AC=4;AF=0.048;AN=84;BaseQRankSum=-3.388;DP=3069;Dels=0.00;FS=5.332;HRun=4;HaplotypeScore=2.5061;InbreedingCoeff=-0.0500;MQ=58.38;MQ0=0;MQRankSum=-0.044;QD=12.15;ReadPosRankSum=-3.040 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,147,1847 0/0:56,0:56:99:0,147,1820 0/0:41,0:42:99:0,120,1465 0/0:130,0:130:99:0,328,4207 0/0:130,0:130:99:0,346,4451 0/0:86,1:87:99:0,220,2909 0/0:62,0:62:99:0,169,2194 0/0:101,0:104:99:0,256,3339 0/1:33,18:51:99:401,0,967 0/0:46,0:46:99:0,129,1622 0/1:24,25:50:99:699,0,665 0/0:50,0:50:99:0,135,1689 0/0:42,0:42:99:0,114,1434 0/0:49,0:49:99:0,138,1689 0/0:173,0:174:99:0,457,5702 0/0:50,0:50:99:0,144,1760 0/0:69,0:70:99:0,175,2214 0/0:51,0:52:99:0,144,1782 0/0:109,0:111:99:0,283,3532 0/0:118,0:118:99:0,286,3577 0/0:85,0:89:99:0,223,2818 0/0:75,0:75:99:0,190,2324 0/0:126,0:126:99:0,325,4183 0/0:70,0:70:99:0,193,2447 0/0:87,0:87:99:0,214,2789 0/0:91,0:91:99:0,235,2930 0/1:16,18:34:99:536,0,444 0/1:21,23:44:99:626,0,608 0/0:35,0:35:93.28:0,93,1157 0/0:44,0:45:99:0,108,1357 0/0:56,1:57:99:0,114,1868 0/0:136,0:138:99:0,337,4266 0/0:82,0:83:99:0,226,2826 0/0:49,0:49:99:0,138,1682 0/0:56,0:56:99:0,150,1868 0/0:68,0:68:99:0,172,2175 0/0:112,0:112:99:0,286,3589 0/0:45,0:46:99:0,126,1570 0/0:59,0:59:99:0,166,2054 0/0:52,0:52:99:0,144,1781 0/0:57,0:58:99:0,159,1936 0/0:62,0:62:99:0,163,2045 17 78059889 . G A 7807.57 . AC=9;AF=0.107;AN=84;BaseQRankSum=-5.998;DP=1783;Dels=0.00;FS=8.799;HRun=0;HaplotypeScore=2.0026;InbreedingCoeff=0.1289;MQ=58.69;MQ0=0;MQRankSum=1.535;QD=18.41;ReadPosRankSum=2.199 GT:AD:DP:GQ:PL 0/0:31,0:31:87.19:0,87,965 0/0:20,0:20:51.15:0,51,597 0/0:31,0:31:81.24:0,81,993 1/1:0,72:72:99:2298,199,0 0/1:40,54:94:99:1567,0,1193 0/0:45,0:45:99:0,129,1615 0/0:42,0:42:99:0,120,1518 0/0:63,0:63:99:0,172,2147 0/0:35,0:35:99:0,99,1128 0/0:37,0:37:99:0,99,1156 0/0:24,0:25:66.12:0,66,713 0/0:23,0:23:66.15:0,66,734 0/0:30,0:30:78.22:0,78,915 0/1:9,30:39:99:888,0,191 0/0:95,0:95:99:0,247,2865 0/0:35,0:35:96.28:0,96,1146 0/0:30,0:30:84.24:0,84,999 0/1:19,12:31:99:336,0,562 0/1:20,23:43:99:635,0,460 0/0:63,0:63:99:0,165,1981 0/0:43,0:43:99:0,117,1400 0/0:48,0:48:99:0,120,1425 0/1:42,43:85:99:1179,0,1190 0/0:56,0:56:99:0,147,1860 0/0:48,0:48:99:0,138,1720 0/0:43,0:43:99:0,111,1407 0/0:27,0:27:72.21:0,72,867 0/0:35,0:35:87.24:0,87,1039 0/0:28,0:28:72.22:0,72,891 0/0:33,0:33:90.23:0,90,1055 0/0:39,0:39:99:0,102,1194 0/0:63,0:63:99:0,165,2005 0/0:57,0:58:99:0,159,1892 0/0:27,0:27:81.23:0,81,942 0/0:34,0:35:84.23:0,84,1011 0/0:42,0:43:99:0,120,1427 0/0:49,0:49:99:0,138,1641 0/0:25,0:25:60.15:0,60,690 0/0:33,0:33:96.28:0,96,1135 0/1:16,18:34:99:528,0,388 0/1:12,14:26:99:377,0,274 0/0:21,0:21:57.16:0,57,672 17 78071052 . T C 89719.50 . AC=66;AF=0.786;AN=84;BaseQRankSum=-4.960;DP=3789;DS;Dels=0.00;FS=0.427;HRun=0;HaplotypeScore=2.5349;InbreedingCoeff=0.1515;MQ=59.29;MQ0=1;MQRankSum=-0.012;QD=25.52;ReadPosRankSum=0.644 GT:AD:DP:GQ:PL 0/1:45,40:85:99:1022,0,1280 0/1:26,40:66:99:998,0,727 1/1:0,72:72:99:2218,184,0 1/1:0,137:137:99:4300,334,0 1/1:0,131:131:99:4356,346,0 0/1:50,47:97:99:1388,0,1279 1/1:0,99:99:99:3129,244,0 0/0:121,0:121:99:0,307,3840 1/1:0,70:70:99:2248,184,0 1/1:0,64:64:99:1989,168,0 1/1:0,72:72:99:2322,196,0 0/0:77,0:77:99:0,214,2584 0/1:33,28:62:99:745,0,959 0/1:32,31:63:99:809,0,890 0/1:134,116:250:99:2940,0,3387 0/1:47,33:80:99:811,0,1370 1/1:0,65:65:99:2051,174,0 1/1:0,57:57:99:1675,144,0 1/1:0,104:104:99:3225,268,0 0/1:72,67:139:99:1646,0,1978 1/1:0,119:119:99:3651,307,0 1/1:1,72:73:99:2295,165,0 1/1:0,151:151:99:5169,403,0 0/1:33,36:69:99:1064,0,863 1/1:0,107:107:99:3431,271,0 0/1:49,44:93:99:1231,0,1273 1/1:0,55:55:99:1734,144,0 1/1:0,79:79:99:2472,205,0 1/1:0,64:64:99:2072,177,0 1/1:0,78:78:99:2515,211,0 1/1:0,69:69:99:2169,178,0 1/1:0,109:109:99:3514,295,0 1/1:0,90:90:99:2753,235,0 0/1:29,44:73:99:1114,0,756 0/0:75,0:75:99:0,199,2428 1/1:0,86:86:99:2737,232,0 1/1:0,125:125:99:3861,325,0 0/1:49,24:73:99:587,0,1399 1/1:0,78:78:99:2602,220,0 1/1:0,79:79:99:2535,217,0 1/1:0,59:60:99:1953,168,0 1/1:0,73:73:99:2388,205,0 17 78071068 . G A 2224.78 . 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G A 462.22 . 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A T 1592.18 . AC=9;AF=0.107;AN=84;BaseQRankSum=4.654;DP=548;Dels=0.00;FS=4.298;HRun=0;HaplotypeScore=1.1379;InbreedingCoeff=-0.1252;MQ=56.40;MQ0=0;MQRankSum=2.579;QD=11.37;ReadPosRankSum=1.291 GT:AD:DP:GQ:PL 0/0:12,0:12:33.09:0,33,371 0/0:8,0:8:18.05:0,18,206 0/0:7,0:7:18.06:0,18,224 0/1:19,13:32:99:390,0,455 0/0:26,0:26:66.16:0,66,756 0/0:16,0:16:48.14:0,48,570 0/1:8,7:15:99:183,0,224 0/0:8,0:8:24.07:0,24,283 0/0:8,0:8:24.05:0,24,258 0/0:9,0:9:24.07:0,24,279 0/0:13,0:15:39.09:0,39,428 0/0:6,0:6:18.03:0,18,191 0/0:8,0:8:21.06:0,21,247 0/1:5,3:8:91.19:91,0,102 0/0:23,0:23:57.13:0,57,647 0/0:11,0:11:27.04:0,27,300 0/0:8,0:8:24.07:0,24,281 0/1:6,7:13:99:176,0,137 0/1:6,5:11:56.96:100,0,57 0/0:20,0:20:51.14:0,51,598 0/0:12,0:12:30.03:0,30,326 0/0:24,0:24:48.14:0,48,593 0/1:14,14:28:99:367,0,372 0/0:11,0:11:30.09:0,30,362 0/0:22,0:22:60.18:0,60,711 0/1:9,6:15:99:178,0,240 0/0:8,0:8:21.06:0,21,239 0/0:17,0:17:42.12:0,42,489 0/0:5,0:5:9.03:0,9,103 0/0:11,0:11:27.07:0,27,304 0/0:11,0:11:30.08:0,30,338 0/0:16,0:17:39.11:0,39,467 0/0:11,0:11:30.07:0,30,340 0/0:4,0:5:9.03:0,9,106 0/0:13,0:13:33.10:0,33,397 0/0:14,0:14:33.10:0,33,383 0/0:10,0:10:27.07:0,27,303 0/0:15,0:15:33.10:0,33,397 0/0:7,0:7:15.04:0,15,168 0/1:3,6:9:78.84:154,0,79 0/1:6,3:9:79.87:80,0,156 0/0:10,0:10:27.07:0,27,304 17 78084769 . G A 18815.32 . AC=27;AF=0.321;AN=84;BaseQRankSum=-11.192;DP=2327;Dels=0.00;FS=15.663;HRun=0;HaplotypeScore=1.4857;InbreedingCoeff=-0.0370;MQ=59.22;MQ0=0;MQRankSum=-1.078;QD=16.15;ReadPosRankSum=-3.108 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,132,1596 0/1:9,16:25:99:506,0,245 1/1:0,36:36:99:1182,99,0 0/0:95,0:95:99:0,244,3217 0/1:37,44:81:99:1184,0,1081 0/0:54,0:54:99:0,141,1864 0/0:41,0:41:99:0,102,1364 0/0:67,0:67:99:0,178,2320 0/1:18,22:40:99:611,0,522 0/1:12,11:23:99:309,0,319 0/1:29,26:56:99:701,0,806 0/0:42,0:42:99:0,102,1313 0/1:11,14:25:99:345,0,332 0/0:48,1:49:94.83:0,95,1528 0/0:168,0:168:99:0,424,5391 0/1:22,12:34:99:288,0,634 0/1:32,25:57:99:647,0,914 0/1:23,32:55:99:920,0,594 0/0:79,0:80:99:0,211,2603 0/0:76,0:76:99:0,202,2544 0/1:47,31:80:99:823,0,1257 1/1:2,62:64:99:1923,129,0 0/1:49,44:93:99:1204,0,1459 0/0:45,0:45:99:0,108,1431 0/1:31,26:57:99:650,0,884 0/0:49,0:49:99:0,129,1680 0/1:22,19:41:99:449,0,647 0/0:44,0:44:99:0,111,1360 0/1:16,17:33:99:472,0,499 0/0:47,0:47:99:0,123,1560 0/0:38,0:38:99:0,108,1371 0/1:50,39:89:99:1018,0,1333 0/0:66,0:66:99:0,172,2145 0/1:21,18:39:99:499,0,630 0/0:51,1:52:93.24:0,93,1520 0/1:26,16:42:99:448,0,728 1/1:0,74:74:99:2481,205,0 0/1:19,24:43:99:616,0,520 1/1:0,27:27:72.23:897,72,0 0/0:46,0:46:99:0,129,1607 0/1:27,24:51:99:642,0,786 0/0:57,0:57:99:0,147,1853 17 78092063 . G A 50805.72 . AC=55;AF=0.655;AN=84;BaseQRankSum=-10.205;DP=2498;Dels=0.00;FS=5.319;HRun=0;HaplotypeScore=1.7359;InbreedingCoeff=0.2100;MQ=58.95;MQ0=0;MQRankSum=-0.615;QD=24.56;ReadPosRankSum=-2.498 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,105,1259 0/1:16,15:31:99:451,0,408 1/1:0,39:39:99:1282,105,0 1/1:0,163:163:99:5217,436,0 1/1:0,159:159:99:5035,409,0 0/1:55,45:100:99:1153,0,1531 1/1:0,73:73:99:2342,187,0 0/0:112,0:112:99:0,292,3749 1/1:0,31:31:81.24:997,81,0 0/1:22,26:48:99:740,0,538 1/1:0,35:35:96.28:1151,96,0 0/0:31,1:32:50.28:0,50,985 0/1:12,10:22:99:308,0,375 0/1:18,23:42:99:678,0,504 0/1:69,76:145:99:2059,0,1802 0/1:24,21:45:99:643,0,576 1/1:0,31:31:84.24:1015,84,0 1/1:0,23:23:66.20:806,66,0 0/1:32,37:69:99:1007,0,746 0/0:76,0:76:99:0,202,2471 1/1:1,66:67:99:2027,168,0 1/1:0,45:46:99:1502,126,0 1/1:0,181:181:99:5844,484,0 0/0:92,0:92:99:0,244,3043 0/1:50,41:91:99:1095,0,1523 0/1:42,38:80:99:1008,0,1133 1/1:0,31:31:90.27:1094,90,0 1/1:1,44:45:99:1429,117,0 1/1:0,17:17:48.15:597,48,0 0/0:38,0:39:99:0,99,1199 0/1:13,20:33:99:576,0,378 1/1:0,84:84:99:2673,217,0 0/1:28,25:53:99:722,0,843 0/1:16,11:27:99:255,0,426 0/0:38,0:38:90.27:0,90,1121 1/1:0,25:25:66.18:797,66,0 1/1:0,59:59:99:1749,141,0 0/1:14,17:31:99:423,0,406 1/1:0,32:32:90.26:1077,90,0 1/1:0,33:33:99:1201,99,0 1/1:0,29:29:81.25:998,81,0 0/1:20,29:49:99:857,0,560 17 78113832 . G A 17515.31 . AC=19;AF=0.226;AN=84;BaseQRankSum=6.230;DP=2947;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.5209;InbreedingCoeff=-0.0202;MQ=59.34;MQ0=0;MQRankSum=0.686;QD=15.16;ReadPosRankSum=0.123 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,141,1612 0/1:43,26:69:99:736,0,1165 1/1:0,55:55:99:1700,138,0 0/0:109,1:110:99:0,261,3621 0/1:54,41:95:99:1237,0,1502 0/0:72,0:72:99:0,187,2368 0/0:67,0:67:99:0,177,2189 0/0:57,0:57:99:0,150,1893 0/1:39,37:76:99:1028,0,1059 0/1:32,26:58:99:709,0,924 0/1:28,35:64:99:981,0,777 0/0:55,0:55:99:0,150,1762 0/1:41,18:59:99:493,0,1085 0/0:52,0:52:99:0,141,1649 0/0:204,0:206:99:0,526,6224 0/0:66,0:66:99:0,187,2174 0/0:61,0:61:99:0,168,1969 0/0:64,0:64:99:0,177,2051 0/0:105,0:105:99:0,277,3191 0/0:99,0:99:99:0,274,3177 0/1:44,44:89:99:1185,0,1172 1/1:0,50:50:99:1746,144,0 0/1:60,46:106:99:1304,0,1788 0/0:48,0:48:99:0,129,1619 0/1:28,42:70:99:1221,0,735 0/0:58,0:58:99:0,156,1970 0/1:26,28:54:99:752,0,658 0/0:74,0:74:99:0,196,2298 0/1:39,40:80:99:1157,0,994 0/0:46,0:46:99:0,129,1445 0/0:46,0:46:99:0,129,1471 0/0:84,0:84:99:0,232,2646 0/0:75,0:75:99:0,190,2229 0/1:23,24:47:99:731,0,648 0/0:57,0:57:99:0,156,1815 0/1:35,35:70:99:1027,0,971 0/0:70,0:70:99:0,181,2132 0/0:52,0:52:99:0,147,1668 0/1:30,18:48:99:505,0,849 0/0:49,0:49:99:0,135,1535 0/1:31,34:65:99:1003,0,837 0/0:70,0:70:99:0,195,2234 17 78155314 . A C 18.41 . AC=6;AF=0.071;AN=84;BaseQRankSum=-2.031;DP=270;Dels=0.00;FS=55.403;HRun=2;HaplotypeScore=0.2545;InbreedingCoeff=-0.1275;MQ=58.35;MQ0=0;MQRankSum=0.651;QD=0.47;ReadPosRankSum=-4.078 GT:AD:DP:GQ:PL 0/0:8,4:12:24.07:0,24,281 0/0:4,3:7:12.03:0,12,141 0/0:3,1:4:9.03:0,9,109 0/0:6,3:9:9.03:0,9,112 0/0:5,5:10:12.03:0,12,138 0/0:4,2:6:9.01:0,9,99 0/0:2,2:5:6.02:0,6,73 0/0:3,1:4:9.01:0,9,92 0/0:1,3:4:3.01:0,3,37 0/0:4,2:7:11.41:0,11,118 0/0:4,2:6:9.03:0,9,106 0/0:2,1:3:6.01:0,6,65 0/0:5,0:5:12.01:0,12,130 0/1:5,2:7:19.31:19,0,125 0/0:18,4:22:54.14:0,54,613 0/0:6,3:9:18.05:0,18,205 0/0:6,3:9:18.05:0,18,214 0/1:4,1:5:21.10:21,0,117 0/0:6,0:6:18.05:0,18,211 0/1:3,1:4:22.32:22,0,90 0/1:6,3:9:15.08:15,0,177 0/0:1,0:1:3.01:0,3,37 0/0:7,2:9:15.05:0,15,187 0/0:7,3:10:21.06:0,21,249 0/0:7,2:9:21.06:0,21,234 0/0:6,0:6:18.03:0,18,200 0/0:3,0:3:6.02:0,6,75 0/1:3,2:5:19.55:20,0,76 0/0:2,0:2:6.02:0,6,72 0/0:2,0:2:6.02:0,6,70 0/0:4,2:6:9.02:0,9,104 0/0:5,1:6:15.05:0,15,183 0/0:3,2:5:9.02:0,9,102 0/0:1,1:2:3.01:0,3,33 0/0:4,2:6:12.04:0,12,143 0/0:9,0:9:24.07:0,24,292 0/1:6,3:9:21.40:21,0,87 0/0:6,1:7:14.53:0,15,141 0/0:2,1:3:6.02:0,6,68 0/0:5,0:5:15.05:0,15,184 0/0:7,0:7:15.04:0,15,171 0/0:4,1:5:12.04:0,12,145 17 78166326 . G A 7412 . AC=8;AF=0.095;AN=84;BaseQRankSum=-11.316;DP=2808;Dels=0.00;FS=8.807;HRun=1;HaplotypeScore=1.6602;InbreedingCoeff=-0.1053;MQ=59.15;MQ0=0;MQRankSum=0.912;QD=13.38;ReadPosRankSum=-2.091 GT:AD:DP:GQ:PL 0/1:23,29:52:99:839,0,663 0/0:48,0:48:99:0,141,1725 0/1:14,23:37:99:646,0,370 0/0:142,0:142:99:0,385,4920 0/1:59,47:106:99:1260,0,1860 0/0:100,0:100:99:0,277,3589 0/0:76,0:76:99:0,220,2879 0/0:88,0:88:99:0,253,3226 0/0:56,0:56:99:0,163,2031 0/0:40,0:41:99:0,111,1384 0/0:47,0:47:99:0,129,1559 0/0:50,0:50:99:0,147,1779 0/0:36,0:36:99:0,102,1294 0/0:45,0:45:99:0,129,1601 0/0:139,0:139:99:0,388,4771 0/0:49,0:49:99:0,141,1699 0/0:35,0:35:90.28:0,90,1128 0/0:43,0:43:99:0,114,1400 0/0:108,1:110:99:0,298,3543 0/0:124,1:125:99:0,322,3953 0/0:98,0:98:99:0,262,3196 0/0:75,0:75:99:0,208,2569 0/1:75,70:145:99:2023,0,2324 0/0:72,0:72:99:0,199,2590 0/0:86,0:86:99:0,244,3130 0/0:74,0:74:99:0,205,2666 0/0:34,0:34:90.26:0,90,1114 0/0:40,0:40:99:0,117,1436 0/0:34,0:34:93.29:0,93,1164 0/1:26,30:57:99:875,0,754 0/0:49,0:49:99:0,135,1662 0/0:99,0:99:99:0,268,3317 0/1:30,29:59:99:764,0,890 0/1:31,18:49:99:480,0,964 0/0:44,0:45:99:0,132,1626 0/1:27,21:49:99:525,0,833 0/0:78,0:78:99:0,208,2459 0/0:49,0:49:99:0,141,1735 0/0:45,0:45:99:0,126,1532 0/0:40,0:40:99:0,114,1377 0/0:44,1:45:99:0,111,1603 0/0:60,0:60:99:0,162,1940 17 78166357 . T G 70.53 . 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C T 3115.93 . 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T G 11.81 . 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C T 4197.38 . 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G A 4580.28 . 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G C 69.88 . 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T C 7299.46 . 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G A 6749.18 . 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C G 1074.45 . 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C T 6664.32 . 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C G 4631.36 . 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G A 2997.33 . 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G A 2182.45 . 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G A 9716.16 . AC=13;AF=0.155;AN=84;BaseQRankSum=0.851;DP=2614;DS;Dels=0.00;FS=5.624;HRun=0;HaplotypeScore=1.5306;InbreedingCoeff=-0.1831;MQ=59.19;MQ0=0;MQRankSum=1.031;QD=12.82;ReadPosRankSum=-0.991 GT:AD:DP:GQ:PL 0/0:66,0:66:99:0,171,1994 0/0:60,0:60:99:0,168,1929 0/0:53,0:53:99:0,141,1615 0/1:58,44:102:99:1158,0,1847 0/1:45,43:88:99:1156,0,1348 0/0:85,0:85:99:0,229,2881 0/0:53,0:53:99:0,147,1835 0/1:31,27:58:99:735,0,930 0/1:27,22:49:99:615,0,670 0/0:43,0:45:99:0,123,1412 0/1:22,17:39:99:446,0,540 0/1:30,22:52:99:601,0,816 0/0:38,0:38:93.23:0,93,1110 0/1:22,38:60:99:1130,0,495 0/0:180,0:181:99:0,478,5498 0/0:40,0:41:99:0,114,1293 0/0:52,0:53:99:0,150,1722 0/0:52,0:52:99:0,141,1627 0/0:75,0:77:99:0,193,2223 0/0:88,0:88:99:0,223,2702 0/0:58,0:59:99:0,159,1834 0/0:55,0:55:99:0,138,1598 0/0:110,0:110:99:0,307,3893 0/0:50,0:50:99:0,141,1792 0/0:77,0:77:99:0,205,2664 0/0:55,0:55:99:0,156,1967 0/1:21,19:40:99:536,0,580 0/1:26,33:59:99:999,0,643 0/0:37,0:38:99:0,99,1175 0/1:35,21:56:99:562,0,930 0/1:20,21:41:99:595,0,532 0/0:62,0:62:99:0,168,1997 0/1:43,20:63:99:492,0,1217 0/0:57,0:57:99:0,162,1820 0/0:57,0:58:99:0,156,1794 0/0:64,0:64:99:0,168,2026 0/0:70,0:70:99:0,198,2234 0/0:65,0:66:99:0,183,2087 0/1:26,25:51:99:692,0,626 0/0:58,0:59:99:0,153,1755 0/0:46,0:46:99:0,117,1318 0/0:37,0:37:99:0,111,1264 17 78444658 . T G 51949.72 . AC=62;AF=0.738;AN=84;BaseQRankSum=-16.742;DP=2388;Dels=0.00;FS=17.740;HRun=0;HaplotypeScore=2.2739;InbreedingCoeff=0.1378;MQ=58.61;MQ0=0;MQRankSum=0.760;QD=23.74;ReadPosRankSum=-7.045 GT:AD:DP:GQ:PL 0/1:35,28:63:99:748,0,852 1/1:0,44:44:99:1359,120,0 1/1:0,30:30:78.21:898,78,0 1/1:0,107:107:99:3586,298,0 1/1:0,100:100:99:3343,277,0 1/1:0,60:60:99:1958,168,0 1/1:0,57:57:99:1768,147,0 1/1:0,68:68:99:2261,184,0 1/1:0,39:39:99:1223,108,0 1/1:0,34:34:99:1115,99,0 1/1:0,49:49:99:1431,126,0 0/1:27,17:44:99:425,0,752 0/1:25,16:41:99:312,0,753 0/0:38,0:38:96.30:0,96,1191 1/1:0,123:124:99:3569,316,0 1/1:0,37:37:99:1142,105,0 1/1:0,50:50:99:1439,135,0 0/1:18,15:33:99:400,0,516 1/1:0,100:101:99:2827,247,0 0/1:46,49:95:99:1213,0,1311 0/1:46,31:77:99:686,0,1278 0/1:29,18:47:99:437,0,802 0/1:72,40:112:99:1039,0,2023 1/1:0,58:58:99:1792,144,0 1/1:0,72:72:99:2357,193,0 1/1:0,42:42:99:1356,111,0 0/0:31,0:31:78.25:0,78,988 0/1:18,20:38:99:550,0,455 0/0:42,0:42:99:0,111,1382 1/1:0,35:35:99:1075,102,0 1/1:0,43:43:99:1349,123,0 0/0:89,0:89:99:0,244,3026 0/1:37,37:74:99:902,0,1040 0/1:28,19:48:99:442,0,780 1/1:0,46:46:99:1401,123,0 0/1:29,18:48:99:430,0,807 1/1:0,82:83:99:2508,232,0 0/1:16,29:45:99:753,0,456 1/1:0,41:41:99:1202,105,0 1/1:0,43:43:99:1384,126,0 1/1:0,23:23:69.16:753,69,0 0/1:17,20:37:99:513,0,505 17 78444679 . T C 26731.97 . AC=23;AF=0.274;AN=84;BaseQRankSum=20.912;DP=3039;Dels=0.00;FS=4.539;HRun=0;HaplotypeScore=2.0045;InbreedingCoeff=0.2217;MQ=58.95;MQ0=0;MQRankSum=3.489;QD=19.56;ReadPosRankSum=1.941 GT:AD:DP:GQ:PL 0/0:66,0:66:99:0,169,2072 0/1:20,28:49:99:749,0,567 0/1:21,16:37:99:413,0,642 1/1:0,126:127:99:4531,343,0 1/1:0,120:120:99:4347,331,0 0/1:59,30:89:99:822,0,1730 0/1:35,30:65:99:959,0,1004 0/0:90,0:90:99:0,244,2963 0/0:55,0:55:99:0,150,1799 0/0:48,0:48:99:0,132,1570 0/0:64,0:64:99:0,172,2087 0/1:38,19:57:99:525,0,1020 0/1:30,20:50:99:493,0,861 0/0:52,0:52:99:0,135,1673 1/1:0,174:174:99:5547,442,0 1/1:0,44:46:99:1551,126,0 0/1:36,24:60:99:627,0,1034 0/0:47,0:48:99:0,132,1594 0/0:114,0:115:99:0,298,3636 0/0:121,0:121:99:0,307,3751 0/1:63,37:100:99:938,0,1754 0/1:36,28:64:99:764,0,974 0/1:82,55:137:99:1577,0,2214 0/0:65,0:65:99:0,171,2115 0/0:92,0:92:99:0,244,2966 0/0:55,0:55:99:0,159,1932 0/0:45,0:45:99:0,111,1340 0/0:55,0:55:99:0,144,1749 0/0:51,0:51:99:0,138,1675 0/0:45,0:45:99:0,117,1398 0/1:22,25:47:99:744,0,583 0/0:119,0:119:99:0,313,3832 0/0:101,0:101:99:0,268,3247 0/0:66,0:66:99:0,187,2248 0/0:45,1:46:98.42:0,98,1556 0/1:31,23:54:99:598,0,858 0/0:103,0:104:99:0,277,3340 0/0:77,0:77:99:0,208,2459 0/0:44,0:44:99:0,126,1498 0/1:33,25:58:99:608,0,991 1/1:1,30:32:46.43:938,46,0 0/0:48,0:48:99:0,126,1537 17 78445702 . A G 21389.88 . 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A C 351.14 . 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C G 27690.93 . 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C T 53575.26 . 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G A 11596.58 . 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A G 12543.49 . 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C T 14230.07 . 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C T 1819.62 . AC=26;AF=0.317;AN=82;BaseQRankSum=-3.047;DP=203;Dels=0.00;FS=2.088;HRun=0;HaplotypeScore=0.0899;InbreedingCoeff=0.2383;MQ=58.76;MQ0=0;MQRankSum=0.543;QD=16.85;ReadPosRankSum=0.196 GT:AD:DP:GQ:PL 0/1:5,3:8:86.40:86,0,134 0/0:1,0:1:3.01:0,3,38 0/0:5,0:5:9.03:0,9,115 0/0:10,0:10:27.09:0,27,351 ./. 0/1:0,1:1:1.76:39,3,0 0/0:5,0:5:15.05:0,15,189 1/1:0,3:3:9.03:110,9,0 0/1:5,1:6:21.11:21,0,118 1/1:0,4:4:12.04:142,12,0 0/1:3,2:5:56.35:56,0,83 0/0:4,0:4:9.03:0,9,121 0/0:7,0:7:18.05:0,18,224 0/0:4,0:4:9.03:0,9,114 0/1:10,8:18:99:205,0,303 0/1:7,5:12:99:140,0,186 0/0:8,0:8:21.03:0,21,228 0/1:2,3:5:59.66:84,0,60 0/1:3,3:6:84.86:85,0,86 0/0:3,0:3:9.03:0,9,102 0/0:4,0:4:9.03:0,9,122 0/0:3,0:3:9.03:0,9,113 0/0:2,0:2:6.02:0,6,83 0/0:2,0:2:6.02:0,6,78 0/0:4,0:4:9.03:0,9,110 0/0:4,0:4:12.04:0,12,166 0/1:2,2:4:58.26:63,0,58 0/0:3,0:3:9.03:0,9,115 1/1:0,7:7:21.06:245,21,0 1/1:0,6:6:18.05:210,18,0 1/1:0,2:2:6.02:72,6,0 0/1:3,2:5:53.58:54,0,96 1/1:0,2:2:6.02:72,6,0 0/0:6,0:6:12.04:0,12,163 0/0:3,0:3:9.03:0,9,108 0/1:1,4:5:26.54:106,0,27 1/1:0,6:6:18.05:203,18,0 0/0:4,0:4:12.03:0,12,134 0/1:2,1:3:27.10:27,0,68 0/0:5,0:5:15.03:0,15,168 0/0:3,0:3:9.03:0,9,114 0/0:5,0:5:12.04:0,12,148 17 79106479 . T C 24.53 . AC=5;AF=0.061;AN=82;BaseQRankSum=-2.465;DP=218;Dels=0.00;FS=116.703;HRun=2;HaplotypeScore=0.2676;InbreedingCoeff=-0.0067;MQ=58.48;MQ0=0;MQRankSum=-0.506;QD=0.91;ReadPosRankSum=-4.104 GT:AD:DP:GQ:PL 0/0:4,2:6:9.03:0,9,107 0/0:3,0:3:9.03:0,9,104 0/0:2,0:3:6.02:0,6,71 0/0:6,2:8:18.05:0,18,208 0/0:2,5:7:6.02:0,6,70 0/0:3,0:3:6.02:0,6,66 0/0:2,2:4:5.23:0,5,40 0/0:3,3:6:9.02:0,9,100 0/1:2,1:3:21.57:22,0,61 0/0:3,0:3:9.03:0,9,105 0/0:5,1:6:9.03:0,9,102 0/0:3,1:4:9.03:0,9,106 0/0:5,1:6:15.03:0,15,163 0/0:2,1:3:6.01:0,6,64 0/0:10,5:15:1.65:3,0,267 0/0:1,1:2:3:0,3,27 0/0:1,0:1:3.01:0,3,36 0/0:3,0:3:9.02:0,9,98 0/1:3,4:8:18.58:19,0,75 0/0:8,3:11:21.05:0,21,235 0/0:5,2:7:12.03:0,12,132 0/0:4,1:5:12.03:0,12,138 0/0:5,3:8:15.04:0,15,163 0/1:0,1:1:1.76:34,3,0 0/0:4,1:5:12.03:0,12,140 0/0:4,0:4:6.02:0,6,74 ./. 0/0:5,1:6:15.03:0,15,160 0/0:2,0:2:6.02:0,6,68 0/0:5,2:7:15.04:0,15,174 0/0:3,2:5:9.01:0,9,91 0/0:10,6:16:30.07:0,30,337 0/0:5,1:6:12.03:0,12,135 0/0:3,1:4:9.03:0,9,104 0/1:2,3:5:25.96:29,0,26 0/0:1,0:1:3.01:0,3,33 0/1:8,1:10:12.91:13,0,222 0/0:2,0:2:6.02:0,6,70 0/0:4,1:5:12.02:0,12,130 0/0:2,2:4:6.02:0,6,70 0/0:4,0:4:9.02:0,9,97 0/0:5,1:6:12.03:0,12,136 17 79106479 . T TC 65.97 . AC=8;AF=0.098;AN=82;BaseQRankSum=4.267;DP=233;FS=145.060;HRun=2;HaplotypeScore=22.4535;InbreedingCoeff=-0.0599;MQ=58.27;MQ0=0;MQRankSum=0.444;QD=1.57;ReadPosRankSum=-4.845 GT:AD:DP:GQ:PL 0/0:5,0:5:12.04:0,12,144 0/0:3,0:3:9.03:0,9,112 0/0:3,0:3:9.03:0,9,110 0/0:9,0:9:18.05:0,18,223 0/0:8,0:8:6.02:0,6,74 0/0:2,2:4:6.02:0,6,74 0/1:4,0:4:17.90:18,0,65 0/0:6,0:6:9.03:0,9,112 0/1:3,0:3:16.21:16,0,65 0/0:3,0:3:9.03:0,9,112 0/0:7,0:7:12.04:0,12,149 0/0:4,0:4:6.02:0,6,74 0/0:6,0:6:15.05:0,15,186 0/0:4,0:4:6.02:0,6,74 0/0:17,0:17:3.41:0,3,295 0/1:3,0:3:31.16:35,0,31 0/0:2,0:2:3.01:0,3,37 0/0:3,0:3:9.03:0,9,112 0/1:8,0:8:10.90:11,0,133 0/0:12,0:12:21.06:0,21,251 0/0:8,0:8:4.66:0,5,173 0/0:6,0:6:12.03:0,12,142 0/0:8,0:8:18.05:0,18,217 0/1:1,0:1:1.76:30,3,0 0/0:5,0:5:12.04:0,12,149 0/0:3,0:3:9.03:0,9,112 ./. 0/0:6,0:6:15.05:0,15,186 0/0:2,0:2:6.02:0,6,74 0/0:7,0:7:15.05:0,15,186 0/0:5,0:5:9.03:0,9,112 0/0:17,0:17:30.09:0,30,372 0/1:4,3:7:28.14:28,0,134 0/0:4,0:4:9.03:0,9,112 0/1:5,0:5:41.75:42,0,62 0/0:2,0:2:3.01:0,3,37 0/1:11,0:11:8.64:9,0,236 0/0:2,0:2:6.02:0,6,74 0/0:5,0:5:9.03:0,9,112 0/0:4,0:4:3.01:0,3,37 0/0:5,0:5:9.03:0,9,112 0/0:6,0:6:11.97:0,12,149 17 79166136 . G A 542.15 . AC=5;AF=0.060;AN=84;BaseQRankSum=4.176;DP=213;Dels=0.00;FS=6.426;HRun=0;HaplotypeScore=0.2272;InbreedingCoeff=-0.1049;MQ=57.66;MQ0=0;MQRankSum=0.375;QD=12.32;ReadPosRankSum=1.374 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,163 0/0:5,0:5:9.02:0,9,97 0/0:4,0:4:12.03:0,12,130 0/0:11,0:11:33.09:0,33,381 0/0:10,0:10:30.08:0,30,346 0/0:4,0:4:12.03:0,12,139 0/0:2,0:2:3.01:0,3,38 0/0:3,0:3:9.03:0,9,106 0/0:3,0:3:6.01:0,6,62 0/0:3,0:3:9.02:0,9,97 0/0:7,0:7:21.05:0,21,226 0/0:3,0:3:6.01:0,6,62 0/0:3,0:3:9.02:0,9,94 0/0:6,0:6:18.05:0,18,197 0/1:15,11:26:99:304,0,334 0/0:6,0:6:15.04:0,15,168 0/1:1,1:2:26.48:29,0,26 0/0:3,0:3:9.02:0,9,102 0/0:10,0:10:27.07:0,27,292 0/0:3,0:3:9.02:0,9,95 0/0:4,0:4:12.03:0,12,125 0/0:4,0:4:9:0,9,89 0/0:7,0:7:21.05:0,21,228 0/0:4,0:4:9.03:0,9,108 0/1:1,4:5:18.39:134,0,18 0/0:3,0:3:9.03:0,9,106 0/0:3,0:3:9.03:0,9,108 0/0:3,0:3:9.02:0,9,96 0/0:3,0:3:9.02:0,9,95 0/0:1,0:1:3.01:0,3,32 0/0:5,0:5:15.03:0,15,156 0/0:5,0:5:12.03:0,12,144 0/0:6,0:6:15.04:0,15,176 0/0:5,0:5:15.02:0,15,149 0/0:5,0:5:12.01:0,12,116 0/0:5,0:5:12.03:0,12,134 0/1:3,3:6:51.83:52,0,82 0/0:1,0:1:3.01:0,3,30 0/1:1,4:5:20.23:118,0,20 0/0:6,0:6:18.04:0,18,186 0/0:5,0:5:15.03:0,15,155 0/0:3,0:3:9.02:0,9,99 17 79171918 . G T 3.73 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.836;DP=283;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3171;InbreedingCoeff=-0.0416;MQ=58.78;MQ0=0;MQRankSum=-0.296;QD=0.29;ReadPosRankSum=-0.850 GT:AD:DP:GQ:PL 0/0:3,0:3:9.03:0,9,102 0/0:6,0:6:12.04:0,12,150 0/0:4,0:4:12.02:0,12,122 0/0:15,0:15:39.11:0,39,462 0/0:8,0:8:24.03:0,24,270 0/0:2,0:2:6.02:0,6,75 0/0:2,0:2:6.02:0,6,79 0/0:8,0:8:24.07:0,24,291 0/0:4,0:4:9.03:0,9,116 0/0:4,0:4:6.02:0,6,78 0/0:3,0:3:9.02:0,9,98 0/0:6,0:6:18.03:0,18,188 0/0:4,0:4:12.03:0,12,133 0/0:11,0:11:30.08:0,30,347 0/0:21,0:21:51.14:0,51,597 0/0:7,0:7:21.05:0,21,223 0/0:8,0:8:21.06:0,21,240 0/0:6,0:6:15.04:0,15,182 0/0:8,0:8:18.04:0,18,199 0/0:9,0:9:24.06:0,24,269 0/0:11,0:11:30.08:0,30,342 0/0:9,0:9:27.07:0,27,302 0/0:14,0:14:39.12:0,39,489 0/0:6,0:6:18.06:0,18,228 0/0:9,0:9:24.04:0,24,271 0/0:5,0:5:12.03:0,12,153 0/0:3,0:3:9.03:0,9,105 0/0:6,0:6:18.05:0,18,199 0/0:3,0:3:9.01:0,9,91 0/0:4,0:4:12.04:0,12,146 0/0:12,0:12:33.09:0,33,387 0/1:10,3:13:47.26:47,0,298 0/0:3,0:3:9.02:0,9,100 0/0:4,0:4:9.02:0,9,105 0/0:5,0:5:15.04:0,15,168 0/0:5,0:5:9.03:0,9,114 0/0:11,0:11:27.08:0,27,337 0/0:7,0:7:21.05:0,21,229 0/0:5,0:5:15.04:0,15,176 0/0:3,0:3:9:0,9,92 0/0:2,0:2:6.02:0,6,71 0/0:4,0:4:12.03:0,12,138 17 79171967 . A G 7738.76 . AC=84;AF=1.000;AN=84;DP=250;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2296;InbreedingCoeff=-0.0353;MQ=58.82;MQ0=0;QD=30.96 GT:AD:DP:GQ:PL 1/1:0,6:6:18.04:190,18,0 1/1:0,1:1:3.01:32,3,0 1/1:0,5:5:15.03:161,15,0 1/1:0,11:11:30.07:343,30,0 1/1:0,12:12:36.11:427,36,0 1/1:0,4:4:9.02:96,9,0 1/1:0,4:4:12.03:136,12,0 1/1:0,7:7:21.06:247,21,0 1/1:0,8:8:24.05:258,24,0 1/1:0,2:2:6.02:67,6,0 1/1:0,5:5:15.03:154,15,0 1/1:0,4:4:12.03:130,12,0 1/1:0,6:6:12.03:128,12,0 1/1:0,8:8:24.06:260,24,0 1/1:0,21:21:57.14:658,57,0 1/1:0,5:5:15.03:157,15,0 1/1:0,4:4:12.03:129,12,0 1/1:0,4:4:9.03:113,9,0 1/1:0,7:7:18.05:211,18,0 1/1:0,7:7:21.04:227,21,0 1/1:0,10:10:24.07:271,24,0 1/1:0,2:2:3.01:33,3,0 1/1:0,11:11:30.08:356,30,0 1/1:0,7:7:15.01:160,15,0 1/1:0,9:9:24.07:286,24,0 1/1:0,4:4:12.02:133,12,0 1/1:0,3:3:6.02:75,6,0 1/1:0,3:3:9.03:106,9,0 1/1:0,1:2:3.01:30,3,0 1/1:0,5:5:15.03:154,15,0 1/1:0,7:7:21.05:237,21,0 1/1:0,12:12:33.10:396,33,0 1/1:0,3:3:9.03:105,9,0 1/1:0,5:5:12.03:140,12,0 1/1:0,6:6:18.04:185,18,0 1/1:0,3:3:9.03:109,9,0 1/1:0,4:4:12.03:132,12,0 1/1:0,6:6:15.04:165,15,0 1/1:0,7:7:18.04:198,18,0 1/1:0,3:3:9.03:104,9,0 1/1:0,3:3:9.02:99,9,0 1/1:0,4:4:12.03:139,12,0 17 79182769 . G A 235.92 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.726;DP=1069;Dels=0.00;FS=5.685;HRun=0;HaplotypeScore=1.4758;InbreedingCoeff=-0.0252;MQ=58.98;MQ0=0;MQRankSum=-0.388;QD=7.37;ReadPosRankSum=-1.076 GT:AD:DP:GQ:PL 0/0:17,0:17:45.14:0,45,565 0/0:10,0:10:30.09:0,30,366 0/0:15,0:15:33.11:0,33,431 0/0:69,0:69:99:0,190,2432 0/0:66,0:66:99:0,172,2303 0/0:47,0:47:99:0,126,1664 0/0:36,0:36:90.26:0,90,1200 0/0:38,0:38:99:0,108,1415 0/1:14,5:19:97.02:97,0,362 0/1:6,7:13:99:201,0,183 0/0:6,0:6:15.05:0,15,186 0/0:19,0:19:54.16:0,54,649 0/0:5,0:5:15.04:0,15,178 0/0:20,0:20:51.14:0,51,621 0/0:49,0:49:99:0,135,1680 0/0:16,0:16:42.13:0,42,534 0/0:23,0:23:60.19:0,60,745 0/0:19,0:19:42.12:0,42,519 0/0:29,0:29:72.22:0,72,898 0/0:35,0:35:93.28:0,93,1161 0/0:21,0:21:48.07:0,48,557 0/0:20,0:20:54.17:0,54,673 0/0:57,0:57:99:0,150,1990 0/0:36,0:36:99:0,99,1287 0/0:43,0:43:99:0,102,1391 0/0:40,2:42:57.56:0,58,1275 0/0:14,0:14:39.11:0,39,473 0/0:25,0:25:60.18:0,60,755 0/0:12,0:12:36.11:0,36,443 0/0:9,0:9:27.08:0,27,321 0/0:15,0:15:42.13:0,42,529 0/0:25,0:25:60.19:0,60,788 0/0:27,0:27:69.22:0,69,886 0/0:12,0:12:36.11:0,36,447 0/0:19,0:19:54.16:0,54,658 0/0:18,0:18:51.14:0,51,611 0/0:33,0:33:90.22:0,90,1076 0/0:28,0:28:72.22:0,72,887 0/0:20,0:20:51.15:0,51,620 0/0:17,0:17:51.16:0,51,629 0/0:13,0:13:36.11:0,36,454 0/0:12,0:12:33.10:0,33,419 17 79182770 . T C 575.80 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.134;DP=1074;Dels=0.00;FS=4.638;HRun=0;HaplotypeScore=1.4748;InbreedingCoeff=-0.0252;MQ=59.01;MQ0=0;MQRankSum=1.243;QD=14.04;ReadPosRankSum=0.265 GT:AD:DP:GQ:PL 0/0:16,0:16:42.13:0,42,522 0/0:10,0:10:30.08:0,30,352 0/0:15,0:15:33.10:0,33,420 0/0:67,0:68:99:0,186,2222 0/0:67,0:67:99:0,175,2172 0/0:48,0:48:99:0,126,1621 0/0:37,0:37:93.28:0,93,1185 0/0:37,0:37:99:0,102,1290 0/0:19,0:19:45.14:0,45,571 0/0:13,0:13:39.12:0,39,466 0/0:7,0:7:15.04:0,15,173 0/0:19,0:19:54.15:0,54,627 0/0:5,0:5:15.03:0,15,166 0/0:20,0:20:57.15:0,57,665 0/0:51,0:51:99:0,141,1717 0/0:16,0:16:42.13:0,42,528 0/0:23,0:23:60.18:0,60,727 0/0:19,0:19:45.13:0,45,558 0/0:29,0:29:72.21:0,72,883 0/0:36,0:36:93.27:0,93,1127 0/1:11,10:21:99:282,0,216 0/1:9,11:20:99:357,0,172 0/0:57,0:57:99:0,156,1986 0/0:35,0:36:99:0,99,1228 0/0:43,0:43:99:0,105,1331 0/0:42,0:42:99:0,105,1299 0/0:14,0:14:39.12:0,39,470 0/0:26,0:27:60.15:0,60,729 0/0:12,0:12:36.11:0,36,424 0/0:9,0:9:27.06:0,27,305 0/0:15,0:15:42.12:0,42,502 0/0:25,0:25:60.17:0,60,746 0/0:26,0:26:69.21:0,69,855 0/0:12,0:12:36.11:0,36,434 0/0:19,0:19:54.15:0,54,646 0/0:17,0:18:48.14:0,48,578 0/0:33,0:33:90.25:0,90,1098 0/0:27,0:27:75.22:0,75,905 0/0:20,0:20:54.14:0,54,638 0/0:17,0:17:51.15:0,51,601 0/0:13,0:13:36.11:0,36,455 0/0:13,0:13:36.07:0,36,417 17 79182778 . T C 17538.19 . AC=44;AF=0.524;AN=84;BaseQRankSum=10.553;DP=1110;Dels=0.00;FS=0.463;HRun=1;HaplotypeScore=1.4388;InbreedingCoeff=-0.1453;MQ=59.08;MQ0=0;MQRankSum=-0.633;QD=19.25;ReadPosRankSum=-1.188 GT:AD:DP:GQ:PL 0/1:10,3:13:75.44:75,0,296 1/1:0,11:11:33.08:389,33,0 0/1:8,9:17:99:194,0,181 1/1:0,77:77:99:2451,190,0 1/1:0,67:67:99:2241,172,0 0/1:23,26:49:99:790,0,615 0/1:26,17:43:99:500,0,702 0/1:21,18:39:99:488,0,638 0/0:19,0:19:48.12:0,48,582 0/1:6,6:12:99:168,0,173 0/1:4,2:6:23.53:24,0,126 0/0:21,0:22:63.19:0,63,740 0/1:3,3:6:88.49:88,0,89 0/1:9,10:20:99:324,0,240 0/1:32,22:54:99:644,0,839 0/0:16,0:16:42.13:0,42,521 1/1:0,24:24:57.18:730,57,0 1/1:0,20:20:51.15:634,51,0 0/1:11,13:24:99:325,0,306 0/0:37,0:37:93.29:0,93,1181 0/1:12,9:21:99:279,0,198 1/1:0,17:17:48.14:597,48,0 0/1:33,31:64:99:906,0,942 0/0:40,0:40:99:0,102,1269 0/1:28,15:43:99:464,0,702 0/1:33,13:46:99:354,0,854 1/1:0,16:16:45.13:550,45,0 0/1:11,15:27:99:403,0,294 0/1:4,7:11:99:216,0,107 0/1:6,3:9:84.42:84,0,148 1/1:0,14:14:39.11:479,39,0 0/0:26,0:26:69.21:0,69,857 0/1:14,11:25:99:315,0,407 0/1:6,7:13:99:181,0,179 1/1:0,18:18:48.15:619,48,0 0/0:18,0:18:51.15:0,51,619 1/1:0,33:33:93.25:1123,93,0 0/1:11,12:23:99:392,0,328 0/1:12,9:21:99:231,0,330 0/0:21,0:21:60.17:0,60,723 0/1:8,5:13:99:159,0,228 0/1:10,5:15:99:121,0,299 17 79207787 . G A 1454.86 . AC=5;AF=0.060;AN=84;BaseQRankSum=3.977;DP=761;Dels=0.00;FS=1.240;HRun=0;HaplotypeScore=0.6435;InbreedingCoeff=-0.0645;MQ=58.43;MQ0=0;MQRankSum=2.116;QD=16.35;ReadPosRankSum=0.503 GT:AD:DP:GQ:PL 0/0:7,0:7:18.05:0,18,211 0/0:19,0:19:51.15:0,51,613 0/0:9,0:9:24.04:0,24,268 0/0:30,0:30:72.22:0,72,915 0/0:33,0:33:78.24:0,78,978 0/0:18,0:18:48.13:0,48,580 0/0:13,0:13:39.11:0,39,456 0/0:14,0:14:42.12:0,42,511 0/0:15,0:15:42.10:0,42,457 0/0:10,0:10:30.08:0,30,343 0/0:19,0:19:51.11:0,51,577 0/1:6,11:17:99:354,0,141 0/0:15,0:15:42.11:0,42,465 0/1:11,8:19:99:245,0,308 0/0:34,0:34:90.22:0,90,1020 0/0:20,0:20:51.13:0,51,608 0/0:20,0:20:54.12:0,54,605 0/0:16,0:16:45.12:0,45,515 0/0:24,0:25:69.16:0,69,750 0/0:25,0:25:57.14:0,57,687 0/0:24,0:24:57.13:0,57,630 0/0:20,0:20:54.14:0,54,624 0/0:26,0:26:72.20:0,72,864 0/0:8,0:8:21.04:0,21,244 0/0:26,0:26:63.19:0,63,803 0/0:24,0:24:66.18:0,66,794 0/0:5,0:5:12.04:0,12,154 0/0:17,0:17:51.11:0,51,551 0/0:15,0:15:45.13:0,45,516 0/1:7,9:16:99:231,0,165 0/0:18,0:18:51.11:0,51,565 0/1:3,14:17:41.23:385,0,41 0/1:9,11:20:99:337,0,189 0/0:15,0:15:39.10:0,39,447 0/0:16,0:16:45.12:0,45,517 0/0:17,0:17:42.11:0,42,485 0/0:16,0:16:39.08:0,39,416 0/0:24,0:24:51.13:0,51,585 0/0:16,0:16:48.12:0,48,550 0/0:17,0:17:42.11:0,42,481 0/0:11,0:11:33.09:0,33,383 0/0:15,0:15:39.09:0,39,440 17 79234180 . G A 143.89 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.617;DP=584;Dels=0.00;FS=5.378;HRun=1;HaplotypeScore=0.4689;InbreedingCoeff=-0.0283;MQ=59.20;MQ0=0;MQRankSum=-1.710;QD=7.57;ReadPosRankSum=-0.055 GT:AD:DP:GQ:PL 0/0:7,0:7:18.04:0,18,197 0/1:4,5:9:99:126,0,103 0/1:7,3:10:80:80,0,203 0/0:29,0:29:66.20:0,66,851 0/0:19,0:19:54.16:0,54,676 0/0:18,0:18:48.14:0,48,588 0/0:19,0:19:51.15:0,51,626 0/0:18,0:18:39.12:0,39,520 0/0:13,0:13:39.09:0,39,443 0/0:9,0:9:24.07:0,24,288 0/0:10,0:10:27.06:0,27,300 0/0:8,0:8:24.07:0,24,281 0/0:12,0:12:30.09:0,30,361 0/0:5,0:5:15.04:0,15,176 0/0:43,0:44:99:0,111,1340 0/0:10,0:10:30.08:0,30,342 0/0:13,0:13:33.10:0,33,396 0/0:15,0:15:42.08:0,42,449 0/0:12,0:12:30.08:0,30,346 0/0:24,0:25:66.16:0,66,765 0/0:16,0:16:45.12:0,45,521 0/0:13,0:13:33.10:0,33,408 0/0:22,0:22:57.18:0,57,733 0/0:21,0:21:48.15:0,48,630 0/0:20,0:20:48.14:0,48,615 0/0:12,0:12:27.09:0,27,359 0/0:15,0:15:30.07:0,30,358 0/0:14,0:14:39.10:0,39,447 0/0:5,0:5:12.03:0,12,147 0/0:14,0:14:33.08:0,33,402 0/0:12,0:12:33.10:0,33,395 0/0:18,0:18:45.12:0,45,526 0/0:12,0:12:30.06:0,30,339 0/0:15,0:15:36.11:0,36,449 0/0:6,0:6:15.04:0,15,174 0/0:10,0:10:27.06:0,27,303 0/0:3,0:3:9.02:0,9,99 0/0:6,0:7:15.05:0,15,186 0/0:10,0:10:21.06:0,21,249 0/0:17,0:17:42.11:0,42,483 0/0:10,0:10:27.07:0,27,310 0/0:7,0:7:21.06:0,21,249 17 79254419 . C G 2148.13 . AC=34;AF=0.405;AN=84;BaseQRankSum=-4.204;DP=1594;Dels=0.00;FS=2264.129;HRun=2;HaplotypeScore=0.5307;InbreedingCoeff=-0.6675;MQ=58.27;MQ0=0;MQRankSum=-0.927;QD=1.63;ReadPosRankSum=-23.080 GT:AD:DP:GQ:PL 0/1:17,10:27:58.25:58,0,377 0/1:22,10:33:73.06:73,0,538 0/1:17,5:22:41.89:42,0,410 0/1:41,27:69:99:250,0,1141 0/1:34,31:65:99:277,0,919 0/1:31,17:48:2.59:0,1,933 0/1:22,14:36:34.48:34,0,605 0/1:22,15:37:99:116,0,539 0/1:15,7:22:65.66:66,0,423 0/1:19,8:27:29.42:29,0,540 0/0:26,6:32:14.62:0,15,688 0/1:23,4:27:19.62:20,0,644 0/1:28,10:38:41.56:42,0,627 0/1:28,9:37:99:129,0,681 0/1:85,31:116:25.95:26,0,2230 0/1:24,9:33:74.68:75,0,632 0/1:31,13:44:58.65:59,0,827 0/0:23,6:29:8:0,8,595 0/1:28,9:38:24.21:24,0,697 0/1:23,12:35:35.69:36,0,608 0/0:38,13:52:11.88:0,12,1003 0/1:16,9:25:14.25:14,0,428 0/1:49,24:73:78.21:78,0,1404 0/1:21,15:36:30.83:31,0,455 0/1:32,18:50:94.62:95,0,859 0/1:28,21:49:34.50:34,0,739 0/1:21,6:27:3.42:3,0,548 0/1:16,12:28:99:102,0,390 0/0:24,9:33:44.97:0,45,687 0/1:12,8:20:44.44:44,0,311 0/0:16,4:20:8.80:0,9,445 0/0:27,6:33:17.92:0,18,755 0/1:22,5:27:22.85:23,0,605 0/1:21,10:31:99:123,0,590 0/1:23,7:30:73.48:73,0,546 0/1:31,8:39:44.40:44,0,802 0/0:34,7:41:40.74:0,41,921 0/0:26,9:35:6.41:0,6,629 0/1:19,11:30:67.37:67,0,472 0/1:23,7:30:93.82:94,0,585 0/1:19,15:34:99:102,0,441 0/1:28,8:36:35.48:35,0,794 17 79254421 . A G 21.50 . AC=4;AF=0.048;AN=84;BaseQRankSum=-9.002;DP=1366;Dels=0.00;FS=548.546;HRun=1;HaplotypeScore=0.5889;InbreedingCoeff=-0.0512;MQ=58.48;MQ0=0;MQRankSum=-0.523;QD=0.14;ReadPosRankSum=-12.458 GT:AD:DP:GQ:PL 0/0:16,7:23:20.90:0,21,525 0/0:26,4:31:72.68:0,73,854 0/0:17,1:18:23.57:0,24,572 0/1:45,14:59:36.64:37,0,1391 0/1:34,14:48:23.23:23,0,1054 0/0:31,3:34:59.20:0,59,1113 0/0:25,3:28:69.21:0,69,845 0/0:21,10:31:62:0,62,729 0/0:14,3:17:23.45:0,23,482 0/0:19,4:23:38.48:0,38,642 0/0:24,2:26:72.22:0,72,871 0/0:25,3:28:48.13:0,48,834 0/0:28,3:31:52.70:0,53,936 0/0:26,6:33:13.49:0,13,838 0/0:86,16:103:99:0,219,2910 0/0:20,5:25:60.18:0,60,720 0/0:31,7:38:62.86:0,63,1101 0/0:21,4:25:12.94:0,13,660 0/0:28,6:34:59.27:0,59,980 0/0:24,5:29:35.97:0,36,801 0/0:41,8:49:92.88:0,93,1396 0/0:16,6:22:48.14:0,48,566 0/0:52,12:64:99:0,118,1790 0/0:23,8:31:27.94:0,28,701 0/0:32,9:41:92.96:0,93,1128 0/0:30,10:40:90.24:0,90,1072 0/0:25,3:28:44.29:0,44,785 0/0:16,6:22:48.15:0,48,579 0/0:25,3:28:41.25:0,41,847 0/1:10,6:16:18.64:19,0,256 0/0:16,2:18:48.15:0,48,580 0/0:27,2:29:78.23:0,78,939 0/0:21,1:22:63.18:0,63,747 0/0:21,7:28:35.59:0,36,710 0/0:22,6:29:63.17:0,63,732 0/1:30,6:36:28.55:29,0,971 0/0:33,3:36:67.75:0,68,1128 0/0:26,6:32:78.22:0,78,915 0/0:20,5:25:25.37:0,25,664 0/0:22,3:25:34.64:0,35,713 0/0:20,9:29:56.23:0,56,657 0/0:28,4:32:51.99:0,52,947 17 79254530 . C T 630.64 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.518;DP=1204;Dels=0.00;FS=5.532;HRun=0;HaplotypeScore=0.7216;InbreedingCoeff=-0.0245;MQ=58.06;MQ0=0;MQRankSum=0.950;QD=11.90;ReadPosRankSum=1.807 GT:AD:DP:GQ:PL 0/0:15,0:15:42.11:0,42,461 0/0:14,0:14:39.08:0,39,414 0/0:18,0:18:51.11:0,51,560 0/0:82,0:83:99:0,202,2460 0/0:54,0:54:99:0,150,1790 0/0:32,0:32:87.24:0,87,1050 0/0:40,1:41:62.32:0,62,1177 0/0:37,1:38:87.25:0,87,1077 0/0:19,0:19:54.15:0,54,621 0/0:22,0:22:60.15:0,60,680 0/0:9,0:9:27.07:0,27,292 0/0:20,0:21:51.13:0,51,590 0/0:11,0:11:30.06:0,30,323 0/0:25,0:25:60.15:0,60,691 0/0:78,0:78:99:0,189,2179 0/0:15,0:15:42.10:0,42,458 0/0:18,0:18:51.10:0,51,542 0/0:18,0:18:48.12:0,48,523 0/0:44,0:45:99:0,114,1294 0/0:49,0:50:99:0,117,1420 0/0:28,0:28:75.20:0,75,833 0/0:15,0:15:42.11:0,42,471 0/0:55,0:55:99:0,147,1785 0/0:34,0:34:87.24:0,87,1035 0/0:60,0:60:99:0,159,1958 0/0:34,0:34:96.26:0,96,1121 0/0:11,0:11:30.07:0,30,318 0/0:19,0:19:57.13:0,57,611 0/0:27,0:27:66.16:0,66,740 0/0:23,0:23:66.17:0,66,741 0/0:16,0:16:42.11:0,42,491 0/0:25,0:25:66.15:0,66,763 0/0:31,0:31:81.21:0,81,921 0/0:21,0:21:60.15:0,60,659 0/0:17,0:17:45.08:0,45,492 0/0:29,0:29:78.20:0,78,879 0/1:14,16:30:99:467,0,339 0/0:28,0:28:72.17:0,72,788 0/1:15,8:23:99:226,0,378 0/0:17,0:17:48.13:0,48,539 0/0:22,0:22:63.14:0,63,691 0/0:13,0:13:33.07:0,33,371 17 79389411 . C T 2813.56 . AC=9;AF=0.107;AN=84;BaseQRankSum=3.882;DP=1442;Dels=0.00;FS=1.207;HRun=1;HaplotypeScore=0.9385;InbreedingCoeff=0.1289;MQ=59.04;MQ0=0;MQRankSum=1.088;QD=13.09;ReadPosRankSum=1.513 GT:AD:DP:GQ:PL 0/0:28,0:28:75.20:0,75,862 0/0:39,0:39:99:0,105,1254 0/0:20,0:20:60.17:0,60,695 0/0:63,0:64:99:0,153,1983 0/0:61,0:61:99:0,153,1981 0/1:19,12:31:99:331,0,496 0/0:38,0:38:87.26:0,87,1140 0/1:17,13:30:99:312,0,494 0/0:23,0:24:63.15:0,63,727 0/0:21,0:21:57.16:0,57,683 0/0:17,0:17:42.12:0,42,506 0/1:10,11:21:99:308,0,275 0/0:19,0:19:51.13:0,51,588 0/1:13,9:22:99:243,0,392 0/0:85,0:85:99:0,208,2465 0/0:36,0:36:99:0,99,1141 0/0:33,0:33:90.25:0,90,1068 0/0:14,0:14:36.10:0,36,431 0/0:55,0:55:99:0,129,1590 0/1:22,25:47:99:683,0,602 0/0:52,0:52:99:0,147,1702 0/0:46,0:46:99:0,111,1310 0/0:65,0:65:99:0,165,2174 0/0:27,0:27:75.24:0,75,950 0/0:35,0:35:84.26:0,84,1066 0/0:41,0:41:96.30:0,96,1278 0/0:26,0:26:60.17:0,60,714 0/0:19,0:19:48.13:0,48,565 0/1:12,9:21:99:249,0,300 0/1:16,7:23:99:151,0,487 1/1:0,20:20:54.15:671,54,0 0/0:48,0:48:99:0,120,1442 0/0:31,0:31:75.18:0,75,887 0/0:26,0:26:75.21:0,75,875 0/0:36,0:36:99:0,99,1207 0/0:35,0:35:87.26:0,87,1069 0/0:58,0:58:99:0,162,1868 0/0:29,0:29:81.22:0,81,931 0/0:28,0:28:81.23:0,81,946 0/0:25,0:25:69.16:0,69,782 0/0:20,0:20:48.13:0,48,572 0/0:26,0:26:78.20:0,78,859 17 79426126 . C T 393.45 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.735;DP=448;Dels=0.00;FS=1.050;HRun=0;HaplotypeScore=0.2752;InbreedingCoeff=-0.0292;MQ=58.52;MQ0=1;MQRankSum=0.337;QD=15.13;ReadPosRankSum=0.645 GT:AD:DP:GQ:PL 0/0:9,0:9:27.07:0,27,300 0/0:6,0:6:18.04:0,18,203 0/0:11,0:11:30.06:0,30,335 0/0:23,0:23:57.18:0,57,710 0/0:10,0:10:30.07:0,30,356 0/0:5,0:5:12.04:0,12,153 0/0:5,0:5:15.04:0,15,182 0/0:11,0:11:30.08:0,30,365 0/0:6,0:6:18.05:0,18,210 0/0:8,0:8:24.06:0,24,270 0/0:11,0:11:30.07:0,30,342 0/0:10,0:10:30.08:0,30,339 0/0:8,0:8:21.05:0,21,237 0/0:5,0:5:15.04:0,15,176 0/0:23,0:24:63.16:0,63,753 0/0:10,0:10:27.05:0,27,306 0/0:6,0:6:15.04:0,15,186 0/0:14,0:14:39.11:0,39,455 0/0:16,0:16:48.12:0,48,530 0/0:27,0:27:69.20:0,69,837 0/0:12,0:13:30.07:0,30,337 0/0:11,0:11:27.07:0,27,317 0/0:16,0:16:42.13:0,42,536 0/0:6,0:6:15.03:0,15,165 0/0:9,0:9:27.08:0,27,325 0/0:5,0:5:15.05:0,15,189 0/0:7,0:7:15.04:0,15,183 0/0:8,0:8:21.03:0,21,244 0/0:9,0:9:24.06:0,24,281 0/0:11,0:11:30.09:0,30,356 0/0:7,0:7:18.05:0,18,225 0/0:18,0:18:39.11:0,39,478 0/0:9,0:9:21.06:0,21,245 0/1:4,8:12:99:266,0,106 0/0:9,0:9:27.07:0,27,294 0/1:8,6:14:99:190,0,199 0/0:15,0:15:45.10:0,45,503 0/0:7,0:7:18.05:0,18,212 0/0:16,0:16:42.12:0,42,509 0/0:6,0:6:18.04:0,18,193 0/0:6,0:6:18.05:0,18,206 0/0:9,0:9:24.07:0,24,281 17 79478007 . G A 41099.82 . 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G A 90621.06 . AC=62;AF=0.738;AN=84;BaseQRankSum=-14.605;DP=4056;DS;Dels=0.00;FS=7.584;HRun=0;HaplotypeScore=3.0202;InbreedingCoeff=-0.1085;MQ=58.22;MQ0=1;MQRankSum=0.441;QD=23.45;ReadPosRankSum=0.052 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2455,208,0 1/1:1,78:79:99:2520,191,0 0/1:45,33:78:99:919,0,1282 1/1:0,142:142:99:4644,385,0 1/1:1,124:125:99:4087,310,0 1/1:0,109:109:99:3826,307,0 0/1:49,39:88:99:1140,0,1539 1/1:0,86:87:99:2819,232,0 1/1:0,89:89:99:2982,253,0 1/1:0,81:81:99:2628,220,0 1/1:1,91:92:99:3022,227,0 0/1:42,37:79:99:1050,0,1241 0/1:34,39:73:99:1121,0,948 0/1:52,54:107:99:1476,0,1415 0/1:130,116:246:99:2951,0,3431 0/1:68,50:118:99:1378,0,1878 1/1:0,92:92:99:3071,256,0 1/1:0,89:89:99:2893,238,0 1/1:1,101:103:99:3290,280,0 0/1:72,55:127:99:1394,0,2097 0/1:72,77:150:99:2068,0,1943 0/1:50,50:100:99:1404,0,1378 1/1:1,145:146:99:4837,377,0 0/1:31,32:63:99:917,0,955 0/1:48,55:104:99:1454,0,1446 1/1:0,67:67:99:2383,199,0 0/1:36,36:72:99:1005,0,1046 0/0:88,0:89:99:0,238,2944 1/1:0,64:64:99:2169,181,0 0/1:51,40:91:99:1116,0,1460 1/1:0,72:73:99:2532,211,0 1/1:0,89:89:99:2857,238,0 0/0:101,1:102:99:0,244,3365 0/1:36,42:78:99:1201,0,1054 0/1:50,40:90:99:1048,0,1341 0/1:47,56:103:99:1431,0,1359 1/1:0,119:119:99:3835,322,0 0/1:54,30:84:99:785,0,1601 1/1:0,66:66:99:2311,196,0 1/1:0,78:78:99:2636,220,0 1/1:0,65:65:99:2256,193,0 1/1:0,84:84:99:2710,223,0 17 79479115 . C T 852.75 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.887;DP=4295;DS;Dels=0.00;FS=3.109;HRun=1;HaplotypeScore=2.7399;InbreedingCoeff=-0.0120;MQ=58.73;MQ0=0;MQRankSum=1.778;QD=10.53;ReadPosRankSum=-0.431 GT:AD:DP:GQ:PL 0/0:91,0:91:99:0,247,3102 0/0:93,0:93:99:0,259,3273 0/0:82,0:82:99:0,229,2926 0/0:136,0:136:99:0,370,4951 0/0:142,0:142:99:0,400,5357 0/0:108,0:108:99:0,286,3823 0/0:97,0:97:99:0,274,3647 0/0:112,0:112:99:0,313,4196 0/0:94,0:94:99:0,253,3234 0/0:76,0:76:99:0,220,2775 0/0:78,0:78:99:0,223,2832 0/0:94,0:94:99:0,256,3248 0/0:61,0:61:99:0,178,2212 0/0:86,0:86:99:0,238,3008 0/0:232,0:232:99:0,638,8133 0/0:113,0:113:99:0,322,4102 0/0:124,0:124:99:0,334,4237 0/0:72,0:72:99:0,205,2601 0/0:131,0:131:99:0,352,4466 0/0:173,0:173:99:0,475,6058 0/0:146,0:148:99:0,397,5045 0/0:77,0:78:99:0,217,2716 0/0:152,0:152:99:0,388,5303 0/0:78,0:78:99:0,223,2965 0/0:100,0:100:99:0,277,3706 0/0:85,0:85:99:0,235,3158 0/0:60,0:60:99:0,169,2146 0/0:88,0:88:99:0,250,3166 0/0:69,0:69:99:0,199,2511 0/0:77,1:78:99:0,184,2711 0/0:79,0:79:99:0,223,2787 0/0:157,0:157:99:0,424,5418 0/1:46,35:81:99:899,0,1421 0/0:99,0:99:99:0,274,3456 0/0:114,0:114:99:0,313,3989 0/0:106,0:106:99:0,289,3691 0/0:112,0:112:99:0,310,3939 0/0:82,0:82:99:0,229,2881 0/0:95,0:95:99:0,271,3433 0/0:82,0:82:99:0,223,2782 0/0:81,0:81:99:0,229,2893 0/0:76,0:76:99:0,214,2696 17 79497627 . C T 48.31 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.659;DP=932;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.6789;InbreedingCoeff=-0.0124;MQ=58.21;MQ0=0;MQRankSum=-0.012;QD=2.42;ReadPosRankSum=0.156 GT:AD:DP:GQ:PL 0/0:15,0:15:45.15:0,45,578 0/0:14,0:14:39.13:0,39,505 0/0:20,0:20:51.16:0,51,652 0/0:63,0:63:99:0,153,2086 0/0:53,0:53:99:0,138,1860 0/0:24,0:24:66.21:0,66,875 0/0:23,0:23:57.19:0,57,770 0/0:20,0:20:60.20:0,60,804 0/0:14,0:14:42.12:0,42,524 0/0:15,0:15:39.12:0,39,496 0/0:13,0:13:36.10:0,36,443 0/0:13,0:13:33.10:0,33,427 0/0:13,0:14:36.11:0,36,445 0/0:13,0:13:36.12:0,36,468 0/0:67,0:67:99:0,168,2139 0/0:17,0:17:51.16:0,51,635 0/0:27,0:27:60.17:0,60,778 0/0:6,0:6:18.05:0,18,223 0/0:33,0:33:84.27:0,84,1094 0/0:43,0:43:99:0,114,1448 0/0:33,0:33:84.27:0,84,1073 0/0:15,0:15:45.14:0,45,562 0/0:51,0:51:99:0,132,1810 0/0:32,0:32:81.26:0,81,1102 0/0:21,0:21:51.17:0,51,686 0/0:18,0:18:51.16:0,51,666 0/0:11,0:11:30.10:0,30,378 0/0:10,0:10:27.09:0,27,355 0/0:15,0:15:36.12:0,36,483 0/0:16,0:16:42.13:0,42,541 0/0:13,0:13:33.11:0,33,429 0/1:15,5:20:94.52:95,0,480 0/0:18,0:19:48.15:0,48,603 0/0:18,0:18:51.13:0,51,623 0/0:17,0:17:42.13:0,42,541 0/0:13,0:13:36.11:0,36,455 0/0:38,0:39:90.28:0,90,1157 0/0:11,0:11:33.10:0,33,415 0/0:17,0:17:48.15:0,48,606 0/0:8,0:8:24.07:0,24,300 0/0:14,0:14:36.11:0,36,449 0/0:14,0:14:36.12:0,36,470 17 79497691 . C T 224.33 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.560;DP=773;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8038;InbreedingCoeff=-0.0158;MQ=58.22;MQ0=0;MQRankSum=-0.836;QD=11.81;ReadPosRankSum=-0.276 GT:AD:DP:GQ:PL 0/0:9,0:9:24.05:0,24,278 0/0:18,0:18:54.14:0,54,583 0/0:11,0:11:33.09:0,33,369 0/0:43,0:43:99:0,126,1483 0/0:37,0:38:99:0,108,1311 0/0:28,0:28:75.22:0,75,898 0/0:18,0:18:51.16:0,51,621 0/0:16,0:16:45.11:0,45,517 0/0:8,0:8:24.06:0,24,261 0/0:11,0:11:33.08:0,33,360 0/0:10,0:10:24.07:0,24,277 0/0:14,0:14:36.11:0,36,432 0/0:12,0:12:30.03:0,30,312 0/0:15,0:15:39.11:0,39,454 0/0:50,0:50:99:0,132,1528 0/0:17,0:17:51.14:0,51,566 0/0:15,0:15:39.11:0,39,439 0/0:7,0:7:21.05:0,21,232 0/0:29,0:30:78.21:0,78,891 0/0:34,0:34:99:0,102,1146 0/0:28,0:28:78.20:0,78,873 0/0:12,0:12:33.08:0,33,368 0/0:39,2:41:69.55:0,70,1265 0/0:28,0:28:78.23:0,78,955 0/0:27,0:27:75.21:0,75,889 0/0:17,0:17:48.13:0,48,563 0/0:7,0:7:18.04:0,18,200 0/0:6,0:6:15.04:0,15,168 0/0:13,0:13:36.10:0,36,413 0/0:3,0:3:6.02:0,6,77 0/0:13,0:13:33.09:0,33,371 0/0:33,0:33:87.26:0,87,1062 0/1:8,11:19:99:270,0,211 0/0:17,0:17:45.12:0,45,519 0/0:15,0:15:39.10:0,39,444 0/0:10,0:10:27.07:0,27,311 0/0:29,0:29:78.20:0,78,878 0/0:12,0:12:36.09:0,36,388 0/0:14,0:14:39.10:0,39,439 0/0:6,0:6:18.05:0,18,199 0/0:13,0:13:33.07:0,33,371 0/0:6,0:6:18.04:0,18,198 17 79504073 . C T 177.31 . AC=7;AF=0.130;AN=54;BaseQRankSum=0.314;DP=57;Dels=0.00;FS=3.899;HRun=0;HaplotypeScore=0.2692;InbreedingCoeff=0.0310;MQ=58.52;MQ0=0;MQRankSum=0.314;QD=16.12;ReadPosRankSum=0.798 GT:AD:DP:GQ:PL ./. 0/0:1,0:1:3.01:0,3,32 ./. 0/0:2,0:2:6.02:0,6,76 0/0:1,0:1:3.01:0,3,36 0/0:1,0:1:3.01:0,3,41 0/0:1,0:1:3.01:0,3,36 ./. ./. 0/0:1,1:2:3.01:0,3,36 ./. 1/1:0,1:1:3.01:34,3,0 0/0:1,0:1:3.01:0,3,32 ./. 0/0:3,0:3:9.03:0,9,108 ./. ./. ./. 0/0:2,0:4:2.98:0,3,22 0/0:4,0:4:9.03:0,9,105 0/0:7,0:7:15.02:0,15,163 1/1:0,3:3:9.03:112,9,0 0/0:4,0:4:9.03:0,9,116 0/0:1,0:1:2.99:0,3,23 0/0:1,0:1:3.01:0,3,32 ./. ./. 0/0:1,0:1:3.01:0,3,34 ./. 0/0:1,0:1:3.01:0,3,34 0/0:1,0:1:3.01:0,3,34 0/0:3,0:3:6.02:0,6,73 0/0:4,0:4:12.03:0,12,136 ./. 0/1:1,2:3:24.41:61,0,24 0/0:1,0:1:3.01:0,3,34 0/0:1,0:1:3.01:0,3,31 ./. 0/0:1,0:1:3.01:0,3,35 0/1:1,1:2:25.53:26,0,29 0/1:1,1:2:30.96:31,0,31 ./. 17 79507867 . T G 120.74 . AC=12;AF=0.176;AN=68;BaseQRankSum=-3.965;DP=130;Dels=0.00;FS=4.772;HRun=4;HaplotypeScore=0.1734;InbreedingCoeff=-0.0847;MQ=57.26;MQ0=0;MQRankSum=0.811;QD=2.87;ReadPosRankSum=-2.241 GT:AD:DP:GQ:PL 0/1:2,3:5:26.24:26,0,45 ./. 0/0:2,0:2:6.01:0,6,62 ./. 0/0:3,3:7:5.98:0,6,47 0/0:1,1:2:2.98:0,3,22 0/0:3,2:6:6.01:0,6,55 ./. ./. 0/1:2,2:4:22.53:23,0,56 0/0:1,2:3:3:0,3,27 0/1:1,1:2:15.67:16,0,30 1/1:0,2:2:3.01:31,3,0 0/1:2,1:3:24.43:24,0,48 0/1:7,4:11:3.64:4,0,155 0/0:4,0:4:12.03:0,12,137 0/0:2,2:4:6.01:0,6,59 0/0:1,1:3:3.01:0,3,30 0/0:1,1:2:3.01:0,3,33 0/0:5,0:5:15.03:0,15,159 ./. 0/0:3,1:4:9.02:0,9,97 0/1:2,2:4:16.67:17,0,53 0/0:1,0:1:3.01:0,3,33 0/0:1,0:1:2.99:0,3,23 0/0:1,0:1:3.01:0,3,34 ./. 0/0:2,0:3:6.02:0,6,70 0/0:2,0:3:2.98:0,3,22 0/0:3,3:6:9.02:0,9,92 ./. 0/0:6,0:6:15.01:0,15,147 0/1:1,2:3:16.68:17,0,31 ./. 0/0:5,1:7:15.03:0,15,153 1/1:1,2:4:6:54,6,0 0/0:1,0:1:3.01:0,3,32 0/1:1,3:4:24.58:25,0,26 0/0:1,1:2:3.01:0,3,33 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:6.02:0,6,71 0/0:2,0:2:6.01:0,6,56 17 79508400 . T C 29656.39 . AC=76;AF=0.905;AN=84;BaseQRankSum=-0.793;DP=1079;Dels=0.00;FS=5.695;HRun=0;HaplotypeScore=0.8159;InbreedingCoeff=-0.1053;MQ=58.84;MQ0=0;MQRankSum=0.812;QD=27.49;ReadPosRankSum=0.219 GT:AD:DP:GQ:PL 1/1:0,20:20:57.15:660,57,0 1/1:0,17:18:48.12:543,48,0 1/1:0,14:14:36.09:429,36,0 1/1:0,70:70:99:2255,187,0 1/1:0,50:51:99:1608,129,0 1/1:0,25:25:63.18:776,63,0 1/1:0,32:32:81.22:995,81,0 0/1:5,17:22:99:402,0,130 1/1:0,14:14:42.09:459,42,0 0/1:5,11:16:99:299,0,123 1/1:0,17:17:48.13:569,48,0 1/1:0,17:17:45.13:529,45,0 1/1:0,11:11:30.07:333,30,0 1/1:0,18:18:42.11:487,42,0 1/1:0,59:59:99:1630,135,0 1/1:0,32:32:90.23:1061,90,0 1/1:0,20:20:51.14:596,51,0 1/1:0,12:12:33.05:369,33,0 1/1:0,23:23:66.18:761,66,0 1/1:0,35:35:99:1107,99,0 1/1:0,23:23:63.17:734,63,0 0/1:7,13:20:99:322,0,174 1/1:0,60:60:99:1716,135,0 1/1:0,36:36:87.22:1037,87,0 0/1:20,31:51:99:857,0,518 1/1:0,32:32:72.22:896,72,0 0/1:11,12:23:99:300,0,291 1/1:0,18:18:45.10:508,45,0 0/1:13,5:18:99:127,0,357 1/1:0,15:15:42.12:485,42,0 1/1:0,22:22:60.16:718,60,0 1/1:0,32:32:84.22:951,84,0 1/1:0,22:22:63.17:728,63,0 1/1:0,14:14:42.11:492,42,0 1/1:0,19:19:48.13:561,48,0 1/1:0,11:11:27.08:311,27,0 0/1:21,15:36:99:369,0,528 0/1:11,10:21:99:235,0,262 1/1:0,15:15:45.12:520,45,0 1/1:0,20:20:54.10:604,54,0 1/1:0,18:18:45.10:534,45,0 1/1:0,27:27:69.19:785,69,0 17 79526402 . G C 2678.85 . 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G C 293.02 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.931;DP=505;Dels=0.00;FS=8.065;HRun=0;HaplotypeScore=0.4429;InbreedingCoeff=-0.0451;MQ=58.80;MQ0=0;MQRankSum=-1.126;QD=7.51;ReadPosRankSum=-1.088 GT:AD:DP:GQ:PL 0/0:7,0:7:21.06:0,21,258 0/0:5,0:5:12.04:0,12,147 0/0:12,0:12:27.09:0,27,354 0/0:24,0:24:57.19:0,57,761 0/0:13,0:13:36.12:0,36,481 0/0:16,0:16:45.13:0,45,589 0/0:8,0:8:24.08:0,24,314 0/0:15,0:15:42.14:0,42,578 0/0:8,0:8:21.06:0,21,256 0/0:3,0:3:9.03:0,9,111 0/1:4,3:7:58.31:58,0,137 0/0:14,0:14:33.09:0,33,416 0/0:4,0:4:9.03:0,9,116 0/0:14,0:14:39.11:0,39,483 0/0:31,0:31:84.25:0,84,1038 0/0:7,0:7:18.05:0,18,221 0/0:12,0:12:33.09:0,33,401 0/0:7,0:7:18.06:0,18,237 0/0:20,0:20:48.15:0,48,607 0/0:25,0:25:60.19:0,60,787 0/1:13,7:20:99:164,0,356 0/0:15,0:15:45.14:0,45,554 0/0:33,0:33:84.27:0,84,1103 0/0:11,0:11:30.10:0,30,389 0/0:10,0:10:27.08:0,27,346 0/0:15,0:15:36.12:0,36,494 0/0:3,0:3:9.03:0,9,113 0/0:9,0:9:24.07:0,24,285 0/0:10,0:10:24.07:0,24,304 0/0:14,0:14:36.11:0,36,462 0/0:8,0:8:24.08:0,24,306 0/1:7,5:12:99:146,0,199 0/0:10,0:10:27.08:0,27,326 0/0:8,0:8:24.08:0,24,304 0/0:3,0:3:9.03:0,9,117 0/0:6,0:6:18.06:0,18,224 0/0:19,0:19:45.13:0,45,549 0/0:7,0:7:21.06:0,21,243 0/0:7,0:7:18.06:0,18,231 0/0:10,0:10:27.09:0,27,345 0/0:9,0:9:24.08:0,24,308 0/0:14,0:14:36.12:0,36,465 17 79526432 . G A 168.15 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.589;DP=510;Dels=0.00;FS=3.221;HRun=0;HaplotypeScore=0.4121;InbreedingCoeff=-0.0334;MQ=58.80;MQ0=0;MQRankSum=0.474;QD=7.31;ReadPosRankSum=1.171 GT:AD:DP:GQ:PL 0/0:7,0:7:18.05:0,18,213 0/0:6,0:6:12.03:0,12,142 0/0:13,0:13:30.09:0,30,373 0/0:25,0:25:60.19:0,60,788 0/0:13,0:13:33.09:0,33,404 0/0:16,0:16:42.13:0,42,534 0/0:8,0:8:24.07:0,24,309 0/0:14,0:14:39.12:0,39,498 0/0:7,0:7:21.06:0,21,255 0/0:3,0:3:9.02:0,9,99 0/0:9,0:9:27.08:0,27,314 0/0:13,0:13:30.08:0,30,361 0/0:5,0:5:15.03:0,15,164 0/0:16,0:16:45.13:0,45,549 0/0:33,0:33:87.20:0,87,989 0/0:5,0:5:15.02:0,15,162 0/0:11,0:11:30.09:0,30,356 0/0:8,0:8:21.06:0,21,257 0/0:18,0:18:48.13:0,48,571 0/0:26,0:26:57.17:0,57,722 0/0:21,0:21:57.16:0,57,672 0/0:14,0:14:42.11:0,42,492 0/0:28,0:28:69.22:0,69,896 0/0:8,0:8:24.06:0,24,277 0/0:8,0:8:21.07:0,21,282 0/0:17,0:17:39.13:0,39,538 0/0:2,0:2:6.01:0,6,64 0/0:9,0:9:24.04:0,24,265 0/0:10,0:10:27.07:0,27,317 0/0:13,0:13:33.10:0,33,398 0/0:12,0:12:30.08:0,30,355 0/0:14,0:14:36.08:0,36,412 0/0:10,0:10:24.07:0,24,299 0/0:8,0:8:21.06:0,21,234 0/0:2,0:2:6.02:0,6,72 0/0:8,0:8:21.06:0,21,248 0/1:13,3:16:68.29:68,0,320 0/0:9,0:9:24.06:0,24,272 0/1:2,5:7:41.08:162,0,41 0/0:11,0:11:30.09:0,30,361 0/0:10,0:10:30.09:0,30,350 0/0:17,0:17:42.11:0,42,501 17 79564304 . G T 5750.14 . AC=9;AF=0.107;AN=84;BaseQRankSum=-13.427;DP=2655;Dels=0.00;FS=25.201;HRun=0;HaplotypeScore=3.1648;InbreedingCoeff=-0.1200;MQ=58.89;MQ0=0;MQRankSum=0.910;QD=12.26;ReadPosRankSum=-1.420 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,126,1573 0/0:55,0:55:99:0,156,1932 0/0:39,0:39:99:0,102,1278 0/0:108,0:108:99:0,283,3727 0/0:96,0:96:99:0,253,3361 0/0:80,0:80:99:0,217,2836 0/0:48,0:48:99:0,132,1730 0/0:85,0:85:99:0,217,2815 0/0:54,0:54:99:0,138,1732 0/0:40,0:40:99:0,117,1446 0/0:55,0:55:99:0,147,1853 0/1:26,26:52:99:719,0,741 0/1:31,24:55:99:581,0,928 0/0:40,0:40:99:0,111,1387 0/0:170,0:170:99:0,457,5742 0/0:35,0:35:90.25:0,90,1101 0/1:28,21:50:99:571,0,771 0/0:49,0:49:99:0,132,1650 0/0:77,0:77:99:0,214,2640 0/0:85,0:85:99:0,229,2849 0/0:62,1:63:99:0,169,2083 0/0:62,0:62:99:0,163,2041 0/0:107,0:107:99:0,298,3947 0/0:66,0:66:99:0,184,2440 0/0:71,0:71:99:0,187,2405 0/0:65,0:65:99:0,184,2380 0/1:25,22:47:99:521,0,710 0/1:23,31:54:99:878,0,666 0/0:37,0:37:99:0,102,1283 0/0:47,0:47:99:0,129,1612 0/0:46,0:46:99:0,126,1545 0/0:111,0:111:99:0,292,3711 0/0:64,0:64:99:0,178,2213 0/0:40,0:40:99:0,111,1356 0/1:27,21:48:99:512,0,748 0/0:53,0:53:99:0,135,1697 0/0:75,0:75:99:0,208,2549 0/0:72,0:72:99:0,196,2441 0/0:47,0:47:99:0,135,1651 0/1:23,20:43:99:547,0,679 0/1:42,26:68:99:694,0,1203 0/1:25,27:52:99:726,0,669 17 79638805 . C T 5881.03 . AC=17;AF=0.202;AN=84;BaseQRankSum=3.339;DP=1346;Dels=0.00;FS=4.296;HRun=0;HaplotypeScore=0.7721;InbreedingCoeff=-0.1062;MQ=59.21;MQ0=0;MQRankSum=1.184;QD=13.16;ReadPosRankSum=-0.322 GT:AD:DP:GQ:PL 0/0:24,0:24:60.16:0,60,687 0/0:35,1:36:58.01:0,58,1039 0/0:18,0:18:45.11:0,45,508 0/0:30,0:30:78.25:0,78,1009 0/0:49,0:49:99:0,132,1685 0/0:26,0:26:69.20:0,69,867 0/0:13,0:13:33.11:0,33,446 0/0:31,0:31:84.26:0,84,1060 0/0:21,0:21:63.16:0,63,708 0/1:5,12:17:99:347,0,104 0/0:22,0:22:63.17:0,63,718 0/1:15,10:25:99:274,0,359 0/1:15,16:31:99:439,0,391 0/0:19,0:19:57.15:0,57,631 0/0:105,0:105:99:0,259,3181 0/0:23,0:23:60.17:0,60,705 0/1:15,11:26:99:273,0,424 0/0:38,0:38:99:0,99,1172 0/0:43,0:44:99:0,105,1225 0/0:46,0:46:99:0,114,1351 0/1:27,27:54:99:713,0,705 0/1:22,15:37:99:439,0,596 0/0:61,0:61:99:0,141,1884 0/1:12,9:21:99:191,0,416 0/0:42,0:42:96.30:0,96,1278 0/1:11,8:19:99:180,0,320 1/1:0,17:17:48.15:582,48,0 0/1:11,10:21:99:293,0,282 0/1:16,8:24:99:214,0,459 0/0:29,0:29:78.19:0,78,895 0/0:28,0:28:81.20:0,81,895 0/1:26,15:41:99:375,0,614 0/0:33,0:33:84.25:0,84,1020 0/0:31,0:31:81.24:0,81,974 0/1:18,17:35:99:430,0,469 0/0:40,0:40:99:0,102,1185 0/0:32,0:32:84.23:0,84,979 0/0:34,0:34:87.25:0,87,1021 0/0:24,0:24:66.19:0,66,772 0/1:9,17:26:99:456,0,242 0/1:13,12:25:99:291,0,373 0/1:13,15:28:99:384,0,328 17 79650828 . T G 1372.65 . AC=19;AF=0.226;AN=84;BaseQRankSum=-7.422;DP=547;Dels=0.00;FS=3.153;HRun=0;HaplotypeScore=0.6186;InbreedingCoeff=-0.1669;MQ=59.27;MQ0=0;MQRankSum=0.134;QD=7.89;ReadPosRankSum=0.859 GT:AD:DP:GQ:PL 0/0:6,0:6:18.05:0,18,206 0/0:9,0:9:18.03:0,18,206 0/0:7,0:8:21.06:0,21,241 0/0:34,0:34:87.26:0,87,1055 0/0:25,0:25:66.18:0,66,779 0/0:26,0:26:78.16:0,78,884 0/0:13,0:13:36.11:0,36,445 0/0:16,0:16:45.13:0,45,545 0/0:10,0:10:30.07:0,30,344 0/1:4,2:6:52.41:52,0,75 0/0:7,0:7:15.04:0,15,178 0/1:5,1:6:11.57:12,0,162 0/1:4,4:8:65.79:66,0,96 0/0:17,0:17:51.14:0,51,604 0/0:29,0:29:81.22:0,81,950 0/0:13,0:13:39.03:0,39,405 0/1:3,4:7:78.44:78,0,93 0/0:7,0:7:21.06:0,21,253 0/0:18,1:20:15.55:0,16,558 0/0:21,0:21:54.15:0,54,626 0/1:6,7:13:99:120,0,190 0/1:10,3:13:65.48:65,0,241 0/0:39,0:39:96.29:0,96,1175 0/1:9,3:12:41.94:42,0,288 0/0:19,0:19:51.14:0,51,600 0/1:7,6:13:99:121,0,214 1/1:0,4:4:12.03:131,12,0 0/1:4,4:8:99:102,0,112 0/1:5,3:8:45.81:46,0,158 0/1:5,3:8:46.36:46,0,163 0/0:10,0:10:27.08:0,27,324 0/1:9,11:20:99:159,0,249 0/1:9,11:20:99:288,0,218 0/0:14,0:14:36.08:0,36,432 0/1:4,3:7:38.23:38,0,128 0/0:4,0:4:12.04:0,12,148 0/0:11,0:11:27.07:0,27,327 0/0:5,0:5:12.03:0,12,131 0/0:10,0:10:30.09:0,30,365 0/1:3,2:5:48.05:48,0,89 0/1:6,3:9:66.61:67,0,160 0/1:3,4:7:65.83:66,0,94 17 79655805 . C T 917.89 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.914;DP=1496;Dels=0.00;FS=0.631;HRun=0;HaplotypeScore=0.7434;InbreedingCoeff=-0.0244;MQ=59.14;MQ0=0;MQRankSum=-1.048;QD=13.70;ReadPosRankSum=0.800 GT:AD:DP:GQ:PL 0/0:33,0:33:87.26:0,87,1046 0/0:37,0:37:99:0,111,1254 0/0:36,0:36:99:0,105,1204 0/0:46,0:46:99:0,132,1692 0/0:52,0:52:99:0,141,1831 0/0:41,0:41:99:0,114,1479 0/0:31,0:31:90.25:0,90,1142 0/0:38,2:40:60.59:0,61,1276 0/0:37,0:37:99:0,99,1194 0/0:21,0:21:60.18:0,60,715 0/0:30,0:30:78.22:0,78,896 0/0:43,0:43:99:0,114,1376 0/0:23,0:23:57.17:0,57,701 0/0:26,0:26:72.21:0,72,847 0/0:102,0:102:99:0,265,3113 0/0:27,0:27:72.21:0,72,849 0/0:39,0:39:99:0,114,1309 0/0:34,0:34:87.24:0,87,1037 0/0:48,0:48:99:0,132,1565 0/0:67,0:67:99:0,187,2186 0/1:20,19:39:99:550,0,483 0/1:13,15:28:99:430,0,345 0/0:39,0:39:99:0,117,1504 0/0:16,0:16:48.15:0,48,616 0/0:36,0:36:99:0,105,1402 0/0:21,0:21:57.18:0,57,735 0/0:24,0:24:72.20:0,72,833 0/0:32,0:32:96.23:0,96,1070 0/0:25,0:25:66.19:0,66,787 0/0:25,0:25:72.20:0,72,828 0/0:30,0:30:78.22:0,78,902 0/0:45,0:45:99:0,114,1328 0/0:33,0:33:90.24:0,90,1034 0/0:30,0:30:72.19:0,72,852 0/0:41,0:41:99:0,111,1274 0/0:27,0:27:78.22:0,78,903 0/0:49,0:49:99:0,114,1363 0/0:23,0:23:63.14:0,63,687 0/0:30,0:30:84.21:0,84,958 0/0:34,0:34:96.27:0,96,1094 0/0:27,0:27:78.22:0,78,906 0/0:29,0:29:81.23:0,81,952 17 79662067 . A G 849.32 . 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A G 364.85 . AC=11;AF=0.131;AN=84;BaseQRankSum=-10.677;DP=1097;Dels=0.00;FS=355.625;HRun=2;HaplotypeScore=0.9851;InbreedingCoeff=-0.1842;MQ=57.14;MQ0=0;MQRankSum=1.891;QD=1.08;ReadPosRankSum=-7.780 GT:AD:DP:GQ:PL 0/0:15,2:17:11.69:0,12,462 0/0:17,3:20:24.53:0,25,571 0/0:8,1:9:24.05:0,24,264 0/1:37,14:51:83.49:83,0,1107 0/1:39,23:62:99:140,0,1162 0/0:28,8:36:23.83:0,24,952 0/0:26,5:31:69.21:0,69,842 0/0:26,11:37:6.14:0,6,773 0/0:13,3:16:5.51:0,6,357 0/0:13,2:15:7.78:0,8,442 0/0:17,7:24:20.55:0,21,540 0/0:12,3:15:12.43:0,12,402 0/1:8,2:10:6.52:7,0,233 0/1:15,6:21:16.41:16,0,506 0/0:61,11:72:99:0,112,1906 0/0:21,6:27:2.55:1,0,551 0/0:13,5:18:2.08:0,2,349 0/0:6,2:8:18.05:0,18,214 0/0:29,8:37:32.23:0,32,776 0/0:37,17:54:52.09:0,52,850 0/0:28,8:36:42.08:0,42,839 0/1:20,5:25:5.90:6,0,538 0/1:40,15:55:81.99:82,0,1140 0/1:17,15:32:81.41:81,0,419 0/1:25,16:41:21.13:21,0,791 0/0:23,7:30:38.61:0,39,776 0/0:13,3:16:36.08:0,36,406 0/0:13,3:16:15.44:0,15,429 0/1:12,2:14:29.14:29,0,366 0/0:14,2:16:42.12:0,42,493 0/0:12,4:16:2.77:0,0,304 0/0:37,6:43:93.05:0,93,1123 0/0:16,4:20:48.13:0,48,558 0/1:6,2:8:10.65:11,0,137 0/0:10,1:11:27.07:0,27,315 0/0:14,3:17:4.74:0,5,387 0/0:34,6:40:77.78:0,78,883 0/1:14,5:20:16.06:16,0,392 0/0:14,6:20:16.40:0,16,413 0/0:10,4:14:27.08:0,27,323 0/0:11,3:14:9.43:0,9,371 0/0:10,3:13:27.08:0,27,328 17 79668135 . G T 1149.58 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.060;DP=2309;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8314;InbreedingCoeff=-0.0244;MQ=59.22;MQ0=0;MQRankSum=0.852;QD=12.92;ReadPosRankSum=-1.676 GT:AD:DP:GQ:PL 0/0:32,0:32:90.24:0,90,1087 0/0:37,0:37:96.28:0,96,1169 0/0:34,0:34:93.28:0,93,1144 0/0:100,0:100:99:0,262,3292 0/0:91,0:92:99:0,241,3030 0/0:100,0:101:99:0,268,3371 0/0:68,0:68:99:0,159,1979 0/0:63,0:63:99:0,156,1983 0/0:40,0:40:99:0,114,1368 0/0:35,0:35:93.27:0,93,1144 0/0:37,0:37:99:0,99,1177 0/0:39,0:39:99:0,114,1337 0/0:31,0:31:84.24:0,84,980 0/0:43,0:43:99:0,123,1464 0/0:116,1:118:99:0,313,3593 0/0:31,0:31:90.25:0,90,1062 0/0:44,0:44:99:0,120,1423 0/0:41,0:41:99:0,111,1338 0/0:56,2:58:99:0,144,1603 0/0:68,0:68:99:0,184,2212 0/0:72,1:73:99:0,199,2302 0/0:57,0:57:99:0,156,1899 0/0:129,0:129:99:0,355,4512 0/0:68,0:68:99:0,165,2068 0/0:86,1:87:99:0,232,2882 0/0:58,0:58:99:0,144,1826 0/0:34,0:34:90.23:0,90,1099 0/0:34,0:34:99:0,99,1174 0/0:40,0:40:99:0,102,1213 0/1:20,15:35:99:323,0,496 0/0:47,0:47:99:0,135,1629 0/0:64,0:64:99:0,171,1988 0/1:22,32:54:99:889,0,575 0/0:39,0:39:99:0,108,1313 0/0:42,0:43:99:0,111,1337 0/0:30,0:30:90.25:0,90,1075 0/0:75,0:77:99:0,214,2453 0/0:49,0:49:99:0,129,1531 0/0:45,0:45:99:0,120,1416 0/0:52,0:52:99:0,156,1820 0/0:41,0:41:99:0,108,1309 0/0:40,1:41:99:0,114,1381 17 79804343 . T C 377.46 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.529;DP=4221;DS;Dels=0.00;FS=5.009;HRun=0;HaplotypeScore=3.9629;InbreedingCoeff=-0.0120;MQ=59.37;MQ0=0;MQRankSum=1.455;QD=8.03;ReadPosRankSum=-0.064 GT:AD:DP:GQ:PL 0/0:63,0:63:99:0,177,2076 0/0:73,0:73:99:0,184,2212 0/0:50,0:51:99:0,129,1556 0/0:214,1:215:99:0,575,6903 0/0:200,1:201:99:0,548,6598 0/0:149,1:150:99:0,376,4716 0/0:140,0:141:99:0,358,4476 0/0:148,0:149:99:0,364,4494 0/0:80,0:81:99:0,205,2440 0/0:78,0:79:99:0,220,2510 0/0:72,0:72:99:0,184,2206 0/0:64,0:65:99:0,174,2037 0/1:29,17:47:99:424,0,811 0/0:65,0:65:99:0,174,2059 0/0:237,0:240:99:0,623,7355 0/0:62,0:62:99:0,178,2086 0/0:62,0:62:99:0,153,1844 0/0:59,0:59:99:0,162,1879 0/0:115,0:115:99:0,295,3495 0/0:159,0:161:99:0,421,5026 0/0:134,0:135:99:0,340,4072 0/0:99,0:99:99:0,256,3011 0/0:216,0:217:99:0,548,6694 0/0:124,0:124:99:0,316,3904 0/0:138,0:139:99:0,364,4493 0/0:138,0:138:99:0,355,4252 0/0:57,0:58:99:0,159,1868 0/0:60,0:60:99:0,168,1977 0/0:50,0:51:99:0,138,1620 0/0:80,0:80:99:0,211,2458 0/0:84,0:84:99:0,214,2569 0/0:174,0:174:99:0,412,5098 0/0:102,0:102:99:0,274,3264 0/0:51,1:53:99:0,141,1616 0/0:73,0:73:99:0,196,2333 0/0:52,0:53:99:0,150,1725 0/0:113,1:116:99:0,292,3457 0/0:74,1:75:99:0,205,2396 0/0:61,0:61:99:0,168,1974 0/0:58,0:58:99:0,162,1891 0/0:47,0:47:99:0,123,1471 0/0:73,0:73:99:0,205,2437 17 79805134 . G A 14103.66 . 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A G 51518.24 . 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A AG 1604.59 . 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GTCC G 1823.53 . AC=30;AF=0.357;AN=84;BaseQRankSum=-2.252;DP=1267;FS=639.135;HRun=0;HaplotypeScore=113.1585;InbreedingCoeff=-0.5573;MQ=57.41;MQ0=0;MQRankSum=1.617;QD=2.01;ReadPosRankSum=-11.325 GT:AD:DP:GQ:PL 0/1:35,0:35:10.37:10,0,1367 0/0:27,0:27:42.15:0,42,1162 0/1:13,0:13:58.91:59,0,377 0/0:49,0:49:7.57:0,8,1767 0/1:49,0:49:99:144,0,1746 0/0:38,0:38:8.77:0,9,1253 0/0:36,0:36:16.63:0,17,1096 0/0:23,0:23:6.42:0,6,842 0/1:23,0:23:99:137,0,714 0/0:21,0:21:9.13:0,9,733 0/1:14,0:14:40.14:40,0,514 0/1:16,0:16:25.79:26,0,441 0/1:17,0:17:43.87:44,0,576 0/1:37,0:37:39.96:40,0,1280 0/1:71,0:71:99:144,0,2757 0/1:17,12:29:99:135,0,1080 0/1:35,0:35:91.46:91,0,1399 0/1:14,8:22:60.50:61,0,742 0/1:35,0:35:40.06:40,0,1480 0/0:42,0:42:15.06:0,15,1349 0/1:35,14:49:66.09:66,0,1966 0/0:30,0:30:60.18:0,60,1394 0/1:31,25:56:99:157,0,1606 0/1:27,0:27:66.79:67,0,894 0/1:32,0:32:28.25:28,0,770 0/1:24,0:23:1.74:2,0,547 0/0:19,0:19:11.23:0,11,749 0/1:17,0:17:21.22:21,0,702 0/0:20,0:20:22.02:0,22,658 0/1:30,0:30:82.13:82,0,898 0/1:29,0:29:99:111,0,1160 0/1:55,0:55:26.36:26,0,1587 0/1:25,0:25:17.41:17,0,872 0/1:24,0:24:63.50:64,0,906 0/1:28,0:28:41.09:41,0,826 0/1:21,0:21:83.23:83,0,591 0/1:17,13:30:99:152,0,1042 0/0:29,0:29:29.32:0,29,1302 0/1:20,0:20:8.76:9,0,758 0/0:28,0:28:23.35:0,23,1176 0/1:23,0:23:45.34:45,0,770 0/1:19,0:19:63.85:64,0,342 17 79952700 . G A 980.85 . AC=3;AF=0.036;AN=84;BaseQRankSum=-5.342;DP=2411;Dels=0.00;FS=5.179;HRun=1;HaplotypeScore=1.6595;InbreedingCoeff=-0.0370;MQ=59.30;MQ0=0;MQRankSum=1.857;QD=13.62;ReadPosRankSum=0.469 GT:AD:DP:GQ:PL 0/0:30,0:30:75.22:0,75,929 0/0:29,0:30:72.21:0,72,889 0/1:11,10:21:99:294,0,300 0/0:184,0:184:99:0,472,6230 0/0:161,0:161:99:0,403,5402 0/0:122,0:123:99:0,307,4000 0/0:101,0:101:99:0,250,3308 0/0:119,0:119:99:0,277,3694 0/0:44,0:44:99:0,117,1498 0/0:30,0:30:84.26:0,84,1053 0/0:25,1:26:63.20:0,63,813 0/0:33,0:33:81.25:0,81,1031 0/0:19,0:19:45.14:0,45,580 0/0:37,0:37:93.30:0,93,1212 0/0:116,0:116:99:0,286,3536 0/0:32,0:32:87.26:0,87,1061 0/0:34,0:34:99:0,99,1207 0/0:21,0:21:51.15:0,51,638 0/0:50,0:50:99:0,132,1639 0/0:51,1:52:99:0,126,1584 0/0:69,0:69:99:0,172,2197 0/0:35,0:35:84.25:0,84,1055 0/0:173,0:173:99:0,427,5716 0/0:143,1:144:99:0,352,4696 0/0:126,0:126:99:0,331,4343 0/0:84,1:85:99:0,188,2802 0/0:29,0:29:78.23:0,78,957 0/0:33,0:34:75.24:0,75,961 0/0:24,0:24:63.20:0,63,803 0/0:29,0:29:84.25:0,84,1038 0/1:13,9:23:99:221,0,361 0/0:59,0:59:99:0,144,1814 0/0:38,0:38:93.30:0,93,1210 0/0:32,0:32:84.26:0,84,1061 0/1:10,18:28:99:541,0,289 0/0:27,0:28:69.16:0,69,843 0/0:50,0:51:99:0,132,1652 0/0:28,0:28:78.24:0,78,967 0/0:31,0:31:90.26:0,90,1086 0/0:25,0:25:72.22:0,72,897 0/0:28,0:28:72.22:0,72,893 0/0:29,0:29:75.19:0,75,911 17 79974731 . T C 17850.29 . AC=43;AF=0.512;AN=84;BaseQRankSum=-1.274;DP=1360;Dels=0.00;FS=4.128;HRun=0;HaplotypeScore=0.9792;InbreedingCoeff=-0.1912;MQ=58.58;MQ0=0;MQRankSum=-0.768;QD=15.69;ReadPosRankSum=-0.915 GT:AD:DP:GQ:PL 0/0:31,0:31:78.23:0,78,945 0/1:12,11:23:99:320,0,338 1/1:0,13:13:33.10:390,33,0 0/1:47,37:85:99:974,0,1125 0/1:48,45:93:99:1297,0,1249 0/0:44,0:44:99:0,120,1465 0/1:27,20:47:99:515,0,792 0/1:24,27:51:99:824,0,604 0/1:11,8:19:99:139,0,300 0/1:13,6:19:99:164,0,305 1/1:0,32:32:90.22:1019,90,0 0/0:17,0:17:51.15:0,51,598 0/1:13,8:21:99:196,0,371 0/1:15,15:30:99:415,0,370 0/1:42,37:79:99:787,0,1124 0/1:10,14:24:99:398,0,281 0/1:17,7:24:99:183,0,447 1/1:0,13:13:39.11:441,39,0 0/1:17,19:37:99:437,0,487 0/1:28,28:56:99:659,0,708 1/1:0,41:43:99:1188,102,0 1/1:0,26:26:57.17:714,57,0 0/1:43,34:77:99:912,0,1136 1/1:0,24:24:63.18:776,63,0 0/1:31,16:47:99:447,0,874 1/1:0,29:29:78.20:960,78,0 0/1:7,10:17:99:251,0,200 0/1:14,9:23:99:238,0,432 0/0:17,0:17:45.13:0,45,538 0/0:23,0:23:66.19:0,66,776 0/1:9,9:18:99:224,0,260 1/1:0,33:33:81.24:977,81,0 0/0:36,0:36:99:0,105,1205 0/0:24,0:24:69.19:0,69,797 0/1:11,7:18:99:168,0,322 0/1:11,10:21:99:299,0,285 0/1:14,15:30:99:386,0,359 0/1:6,12:19:99:355,0,143 1/1:0,14:14:39.11:448,39,0 0/0:30,0:30:84.24:0,84,994 0/1:7,7:14:99:190,0,182 0/1:12,7:19:99:158,0,343 17 79981533 . G A 152.14 . AC=2;AF=0.028;AN=72;BaseQRankSum=3.017;DP=125;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1666;InbreedingCoeff=0.1481;MQ=58.84;MQ0=0;MQRankSum=0.626;QD=15.21;ReadPosRankSum=1.822 GT:AD:DP:GQ:PL 0/0:4,0:4:12.03:0,12,131 0/0:3,0:3:9.02:0,9,96 ./. 0/0:6,0:6:18.04:0,18,201 0/0:4,0:4:12.03:0,12,129 0/0:2,0:2:6.01:0,6,66 0/0:4,0:4:9.03:0,9,106 0/0:2,0:2:6.02:0,6,67 0/0:2,0:2:6.02:0,6,68 0/0:4,0:4:12.03:0,12,128 ./. 0/0:2,0:2:3.01:0,3,34 ./. 0/0:2,0:2:6.02:0,6,71 0/0:8,0:8:21.05:0,21,222 0/0:2,0:2:6.02:0,6,66 0/0:5,0:5:12.03:0,12,125 0/0:3,0:3:6.02:0,6,69 0/0:4,0:4:12.03:0,12,126 0/0:8,0:8:24.06:0,24,256 0/1:2,1:3:30.96:31,0,31 0/0:1,0:1:3.01:0,3,32 0/0:8,0:8:24.07:0,24,283 ./. 0/0:5,0:5:15.04:0,15,166 0/0:3,0:3:9.02:0,9,100 0/0:3,0:3:9.03:0,9,104 0/0:2,0:2:6.02:0,6,65 0/0:4,0:4:9.02:0,9,98 0/0:2,0:2:6.01:0,6,63 ./. 0/1:0,6:7:0.13:193,15,0 0/0:1,0:1:3:0,3,29 0/0:3,0:3:9.03:0,9,102 0/0:2,0:2:6.02:0,6,64 0/0:2,0:2:6.02:0,6,65 0/0:5,0:5:15.03:0,15,156 ./. 0/0:3,0:3:9.02:0,9,95 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:6.02:0,6,64 0/0:1,0:1:3.01:0,3,39 17 80006957 . A C 46731.71 . AC=58;AF=0.690;AN=84;BaseQRankSum=26.187;DP=1905;Dels=0.00;FS=6.048;HRun=0;HaplotypeScore=0.9353;InbreedingCoeff=0.1088;MQ=58.60;MQ0=0;MQRankSum=1.564;QD=27.17;ReadPosRankSum=0.647 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,141,1689 0/1:21,16:37:99:461,0,615 1/1:1,31:32:60.66:1073,61,0 1/1:0,84:84:99:3073,229,0 1/1:0,71:71:99:2691,202,0 0/1:34,24:58:99:727,0,969 1/1:0,47:47:99:1745,129,0 0/1:27,29:56:99:923,0,767 0/1:26,20:46:99:510,0,644 0/0:36,0:36:99:0,99,1181 1/1:0,33:34:93.29:1180,93,0 0/1:16,23:39:99:722,0,425 1/1:0,25:25:63.19:788,63,0 0/1:15,15:30:99:458,0,356 1/1:0,91:91:99:2915,223,0 1/1:1,33:34:63.18:1179,63,0 1/1:0,40:40:99:1443,114,0 1/1:0,21:21:63.19:775,63,0 1/1:0,61:61:99:2022,156,0 1/1:0,74:74:99:2298,181,0 1/1:0,51:51:99:1816,144,0 0/1:22,19:41:99:567,0,580 1/1:0,97:97:99:3815,280,0 1/1:0,48:48:99:1809,132,0 1/1:0,42:42:99:1656,123,0 1/1:0,47:47:99:1732,126,0 0/1:20,20:40:99:575,0,588 0/1:18,20:38:99:581,0,516 0/1:20,16:36:99:469,0,554 1/1:0,35:35:99:1305,102,0 1/1:0,33:33:93.28:1176,93,0 1/1:0,41:41:99:1391,111,0 0/1:21,27:48:99:740,0,574 0/1:19,21:40:99:621,0,560 0/1:7,21:28:99:648,0,176 0/1:24,19:43:99:543,0,630 0/1:36,31:67:99:890,0,949 0/1:21,14:35:99:368,0,625 1/1:0,30:30:84.26:1048,84,0 0/0:33,0:33:93.26:0,93,1076 0/0:29,0:29:84.24:0,84,972 0/0:34,0:34:96.29:0,96,1161 17 80009411 . G C 22.09 . AC=4;AF=0.087;AN=46;BaseQRankSum=-3.006;DP=44;Dels=0.00;FS=39.130;HRun=1;HaplotypeScore=0.0851;InbreedingCoeff=0.0558;MQ=57.87;MQ0=0;MQRankSum=1.186;QD=4.42;ReadPosRankSum=-2.951 GT:AD:DP:GQ:PL ./. 0/0:1,0:1:3.01:0,3,39 ./. 0/0:1,1:2:3.01:0,3,42 0/0:2,0:2:6.02:0,6,83 0/1:2,1:3:26.22:26,0,73 0/0:2,0:2:3.01:0,3,43 0/0:2,1:3:6.02:0,6,75 ./. ./. ./. 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,39 ./. 0/0:2,1:3:6.02:0,6,73 ./. 0/0:1,0:1:3.01:0,3,33 ./. ./. 0/0:3,0:3:9.03:0,9,116 0/0:2,0:2:3.01:0,3,40 0/1:0,1:1:1.76:31,3,0 0/0:3,0:3:6.02:0,6,82 0/0:1,0:1:3.01:0,3,33 0/0:3,2:5:5.69:0,6,50 ./. ./. 0/0:1,0:1:3.01:0,3,39 ./. 0/0:1,0:1:3.01:0,3,39 ./. 0/0:1,0:1:3.01:0,3,36 ./. ./. ./. 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,39 ./. ./. 1/1:0,1:1:3.01:32,3,0 ./. 0/0:1,0:1:3.01:0,3,38 17 80018580 . G A 134.95 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.113;DP=796;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7678;InbreedingCoeff=-0.0136;MQ=58.57;MQ0=0;MQRankSum=1.768;QD=16.87;ReadPosRankSum=-1.493 GT:AD:DP:GQ:PL 0/1:2,6:8:38.02:181,0,38 0/0:12,0:12:30.08:0,30,336 0/0:11,0:11:30.08:0,30,348 0/0:35,0:35:84.21:0,84,1043 0/0:36,0:37:81.21:0,81,981 0/0:29,0:29:60.12:0,60,729 0/0:35,0:35:72.22:0,72,939 0/0:17,0:17:45.12:0,45,550 0/0:16,0:16:39.08:0,39,454 0/0:10,0:10:27.08:0,27,329 0/0:9,0:9:27.05:0,27,288 0/0:9,0:10:27.07:0,27,296 0/0:10,0:10:30.06:0,30,331 0/0:13,0:13:27.08:0,27,331 0/0:50,0:50:99:0,120,1364 0/0:26,0:27:63.14:0,63,715 0/0:15,0:15:42.10:0,42,477 0/0:7,0:7:21.05:0,21,231 0/0:24,0:24:60.15:0,60,697 0/0:37,0:37:99:0,99,1164 0/0:28,0:28:69.19:0,69,820 0/0:24,0:24:54.12:0,54,620 0/0:43,0:43:99:0,102,1213 0/0:20,0:20:54.11:0,54,617 0/0:24,0:24:57.16:0,57,722 0/0:26,0:26:69.13:0,69,767 0/0:5,0:5:12.03:0,12,133 0/0:11,0:12:24.07:0,24,304 0/0:10,0:10:30.06:0,30,331 0/0:18,0:18:54.11:0,54,590 0/0:10,0:10:30.08:0,30,352 0/0:34,0:34:81.20:0,81,960 0/0:16,0:16:36.09:0,36,415 0/0:14,0:14:33.08:0,33,399 0/0:12,0:12:27.06:0,27,311 0/0:15,0:15:39.07:0,39,437 0/0:23,0:24:51.14:0,51,615 0/0:10,0:10:27.07:0,27,316 0/0:5,0:5:12.02:0,12,123 0/0:10,0:10:27.06:0,27,314 0/0:14,0:14:39.10:0,39,448 0/0:10,0:10:30.07:0,30,345 17 80039158 . G A 45.55 . AC=2;AF=0.025;AN=80;BaseQRankSum=-0.833;DP=256;Dels=0.00;FS=8.258;HRun=0;HaplotypeScore=0.3373;InbreedingCoeff=-0.0454;MQ=58.91;MQ0=0;MQRankSum=0.596;QD=4.55;ReadPosRankSum=-1.091 GT:AD:DP:GQ:PL 0/0:3,0:3:6.02:0,6,74 0/0:7,0:7:15.05:0,15,197 0/0:5,0:5:15.04:0,15,160 0/0:4,0:4:12.03:0,12,138 0/0:4,0:4:12.03:0,12,149 0/0:1,0:1:3.01:0,3,34 0/0:8,0:8:24.07:0,24,288 0/0:3,0:3:9.03:0,9,122 0/1:5,1:6:17.45:17,0,137 ./. 0/0:8,0:8:24.07:0,24,294 0/0:4,0:4:9.03:0,9,107 0/0:2,0:2:6.02:0,6,68 0/0:9,0:9:27.07:0,27,297 0/0:19,0:19:45.11:0,45,534 0/0:12,0:12:36.10:0,36,416 0/0:11,0:11:30.09:0,30,352 0/0:5,0:5:15.04:0,15,169 0/0:5,0:5:15.04:0,15,170 0/0:9,0:9:24.06:0,24,270 0/0:7,0:7:18.02:0,18,181 0/1:1,3:4:17.59:87,0,18 0/0:8,0:8:21.06:0,21,260 0/0:4,0:4:9.03:0,9,123 0/0:3,0:3:9.03:0,9,105 ./. 0/0:5,0:5:15.05:0,15,183 0/0:5,0:5:15.04:0,15,174 0/0:3,0:3:9.02:0,9,100 0/0:8,0:8:21.05:0,21,246 0/0:10,0:10:30.09:0,30,361 0/0:12,0:12:30.07:0,30,346 0/0:6,0:6:18.04:0,18,193 0/0:6,0:6:18.05:0,18,211 0/0:4,0:4:12.03:0,12,139 0/0:7,0:7:21.04:0,21,231 0/0:4,0:4:9.03:0,9,106 0/0:3,0:3:6:0,6,62 0/0:9,0:9:27.08:0,27,313 0/0:6,0:6:15.04:0,15,170 0/0:6,0:6:15.05:0,15,185 0/0:9,0:9:21.02:0,21,231 17 80039481 . G A 26801.23 . AC=41;AF=0.488;AN=84;BaseQRankSum=-16.216;DP=1649;Dels=0.00;FS=5.867;HRun=1;HaplotypeScore=1.5120;InbreedingCoeff=-0.0006;MQ=58.95;MQ0=0;MQRankSum=1.407;QD=19.94;ReadPosRankSum=-0.555 GT:AD:DP:GQ:PL 1/1:0,27:27:66.19:796,66,0 1/1:0,29:29:81.21:937,81,0 0/1:14,8:22:99:221,0,416 0/1:45,58:103:99:1551,0,1297 0/1:56,41:97:99:1097,0,1762 1/1:0,59:59:99:1993,156,0 0/1:40,20:61:99:495,0,1185 1/1:0,52:52:99:1641,135,0 0/0:26,0:26:72.23:0,72,927 0/0:19,0:19:57.18:0,57,709 0/1:12,9:21:99:234,0,335 0/0:26,0:26:75.23:0,75,934 0/1:8,5:13:99:113,0,239 0/0:23,0:23:60.19:0,60,747 1/1:0,62:62:99:2026,169,0 0/1:11,13:24:99:359,0,334 1/1:2,30:32:39.49:931,39,0 1/1:0,16:16:48.12:557,48,0 0/1:17,18:35:99:565,0,392 0/1:32,31:63:99:751,0,979 0/1:24,26:50:99:701,0,662 0/0:29,0:29:84.26:0,84,1062 1/1:0,104:106:99:3520,289,0 1/1:0,39:39:99:1331,111,0 0/1:40,32:72:99:811,0,1252 0/1:22,29:51:99:806,0,606 0/0:24,0:24:72.23:0,72,910 0/1:9,10:19:99:271,0,256 0/1:14,17:31:99:485,0,431 0/0:28,0:28:81.25:0,81,995 0/1:14,18:32:99:520,0,399 1/1:0,60:60:99:1794,150,0 0/0:46,0:46:99:0,123,1550 0/1:13,12:25:99:337,0,301 0/1:12,6:18:99:130,0,334 0/1:13,14:27:99:401,0,369 0/1:23,25:48:99:704,0,642 0/1:16,13:29:99:343,0,445 0/1:8,13:21:99:382,0,237 0/0:34,1:35:65.84:0,66,1170 0/0:24,0:24:69.22:0,69,863 0/0:25,0:25:72.23:0,72,914 17 80040522 . G A 1111.75 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.979;DP=1148;Dels=0.00;FS=2.033;HRun=0;HaplotypeScore=0.9585;InbreedingCoeff=-0.0246;MQ=58.47;MQ0=0;MQRankSum=-1.208;QD=15.44;ReadPosRankSum=-1.598 GT:AD:DP:GQ:PL 0/0:13,0:13:30.07:0,30,333 0/0:18,0:18:54.12:0,54,602 0/0:12,0:12:27.05:0,27,306 0/0:85,0:85:99:0,205,2538 0/0:57,0:57:99:0,150,1826 0/0:47,0:47:99:0,114,1426 0/0:31,0:31:84.23:0,84,1030 0/0:44,0:45:99:0,105,1335 0/0:19,0:19:51.14:0,51,590 0/0:17,0:17:42.11:0,42,483 0/0:18,0:18:45.13:0,45,561 0/0:14,0:14:30.08:0,30,342 0/0:7,0:7:21.05:0,21,229 0/0:10,0:10:27.07:0,27,298 0/0:58,0:59:99:0,150,1734 0/0:21,0:21:60.17:0,60,697 0/0:17,0:17:42.12:0,42,503 0/0:18,0:18:42.10:0,42,493 0/0:29,0:29:69.18:0,69,769 0/0:46,0:46:99:0,108,1292 0/1:14,20:34:99:517,0,324 0/0:38,0:38:99:0,99,1136 0/0:86,0:86:99:0,202,2541 0/0:35,0:35:84.24:0,84,1037 0/0:36,0:36:84.25:0,84,1061 0/0:39,0:39:96.28:0,96,1188 0/0:14,0:14:36.06:0,36,390 0/0:11,0:11:27.08:0,27,332 0/0:16,0:16:42.08:0,42,460 0/0:16,0:16:42.12:0,42,499 0/0:12,0:12:30.08:0,30,338 0/1:13,25:38:99:657,0,256 0/0:24,0:24:69.19:0,69,805 0/0:17,0:17:45.13:0,45,531 0/0:16,0:16:45.13:0,45,525 0/0:20,0:20:48.13:0,48,581 0/0:30,0:30:72.19:0,72,850 0/0:15,0:15:33.07:0,33,373 0/0:16,0:16:36.09:0,36,421 0/0:19,0:19:42.10:0,42,470 0/0:13,0:13:33.05:0,33,359 0/0:20,0:20:48.11:0,48,559 17 80045881 . C T 184.58 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.485;DP=1807;Dels=0.00;FS=2.997;HRun=1;HaplotypeScore=1.5532;InbreedingCoeff=-0.0121;MQ=58.56;MQ0=0;MQRankSum=-0.065;QD=5.27;ReadPosRankSum=-0.569 GT:AD:DP:GQ:PL 0/0:29,0:29:75.20:0,75,890 0/0:19,0:19:45.14:0,45,570 0/0:13,0:13:36.09:0,36,438 0/0:133,0:134:99:0,325,4171 0/0:91,0:91:99:0,223,2859 0/0:48,0:48:99:0,135,1701 0/0:51,0:51:99:0,132,1681 0/0:72,0:72:99:0,190,2457 0/0:25,0:25:63.19:0,63,776 0/0:35,0:35:87.27:0,87,1080 0/0:26,0:26:60.17:0,60,715 0/0:24,0:24:57.17:0,57,716 0/0:21,0:21:51.15:0,51,615 0/0:20,0:20:54.16:0,54,662 0/0:113,0:114:99:0,280,3453 0/1:24,11:35:99:231,0,739 0/0:18,0:18:51.16:0,51,625 0/0:22,0:22:60.18:0,60,744 0/0:48,0:48:99:0,129,1544 0/0:74,0:74:99:0,184,2274 0/0:59,0:59:99:0,156,1862 0/0:55,0:55:99:0,147,1758 0/0:115,0:115:99:0,295,3823 0/0:49,0:49:99:0,120,1541 0/0:50,0:50:99:0,135,1712 0/0:37,0:37:87.23:0,87,1062 0/0:29,0:29:69.21:0,69,832 0/0:31,0:31:78.24:0,78,973 0/0:26,0:26:57.17:0,57,696 0/0:21,0:21:54.16:0,54,652 0/0:25,0:25:63.18:0,63,764 0/0:72,0:72:99:0,181,2269 0/0:52,0:52:99:0,144,1713 0/0:25,0:27:63.19:0,63,773 0/0:26,0:26:60.17:0,60,720 0/0:17,0:17:51.16:0,51,641 0/0:63,0:64:99:0,153,1896 0/0:18,0:18:45.14:0,45,562 0/0:32,0:32:78.23:0,78,947 0/0:31,0:31:75.23:0,75,933 0/0:26,0:26:72.21:0,72,860 0/0:26,0:26:66.20:0,66,829 17 80047551 . GCGGGCACCACGCCC G 2178.70 . AC=38;AF=0.452;AN=84;BaseQRankSum=-5.860;DP=377;FS=716.126;HRun=0;HaplotypeScore=91.7170;InbreedingCoeff=-0.8259;MQ=57.02;MQ0=1;MQRankSum=1.370;QD=6.02;ReadPosRankSum=-11.981 GT:AD:DP:GQ:PL 0/1:6,0:6:33.61:34,0,786 0/1:14,0:14:99:111,0,961 0/1:4,0:4:18.96:19,0,494 0/1:18,0:18:52.36:52,0,1879 0/1:19,0:19:99:212,0,1217 0/1:10,0:10:45.39:45,0,1104 0/1:15,0:15:99:145,0,1237 0/1:12,0:12:99:164,0,819 0/1:6,0:6:16.93:17,0,810 0/1:4,0:4:43.97:44,0,208 0/0:2,0:2:6.02:0,6,276 0/1:3,0:3:16.86:17,0,397 0/1:5,0:5:10.89:11,0,626 0/1:10,0:10:49.73:50,0,1165 0/1:19,0:19:99:121,0,1847 0/1:4,4:8:90.73:91,0,673 0/1:4,0:4:4.94:5,0,459 0/1:8,0:8:51.59:52,0,1022 0/1:11,0:11:66.90:67,0,1194 0/1:9,0:9:18.68:19,0,639 0/1:13,0:13:99:122,0,1073 0/1:9,0:9:61.70:62,0,1002 0/1:25,0:25:99:249,0,2261 0/1:7,0:7:60.68:61,0,620 0/1:16,0:16:46.71:47,0,2256 0/1:11,0:10:40.76:41,0,1104 0/1:7,0:7:43.94:44,0,795 0/0:7,0:7:15.02:0,15,658 0/1:6,0:6:38.41:38,0,728 0/1:6,0:6:15.97:16,0,627 0/1:9,0:9:59.51:60,0,946 0/1:10,0:10:84.82:85,0,947 0/1:11,0:11:10.72:11,0,1674 0/1:3,1:4:52.64:53,0,374 0/1:9,0:9:24.84:25,0,1384 0/0:4,0:4:8.76:0,9,339 0/1:9,5:14:46.03:46,0,1544 0/1:7,0:7:19.87:20,0,785 0/1:5,0:5:25.96:26,0,473 0/0:2,0:2:6.02:0,6,425 0/1:4,0:4:12.98:13,0,300 0/1:4,0:4:62.97:63,0,185 17 80047552 . C G 1773.08 . 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C A 13.18 . AC=6;AF=0.073;AN=82;BaseQRankSum=-4.341;DP=265;Dels=0.00;FS=25.603;HRun=2;HaplotypeScore=0.2134;InbreedingCoeff=-0.0139;MQ=55.38;MQ0=0;MQRankSum=-1.115;QD=0.36;ReadPosRankSum=-3.600 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,38 0/0:7,3:10:18.05:0,18,216 0/0:4,1:5:9.03:0,9,109 0/1:6,5:11:21.93:22,0,133 0/0:5,6:11:6.02:0,6,79 0/0:1,1:2:3:0,3,27 0/0:8,0:8:15.02:0,15,180 ./. 0/0:5,1:6:15.04:0,15,179 0/1:3,3:6:12.66:13,0,91 0/0:6,0:6:15.05:0,15,180 0/0:2,0:2:6.02:0,6,66 0/0:6,1:7:18.06:0,18,220 0/0:6,0:6:18.03:0,18,198 0/0:15,2:17:42.12:0,42,496 0/0:4,2:6:12.04:0,12,143 0/0:3,1:4:3.01:0,3,37 0/0:2,2:4:6.02:0,6,72 0/0:4,3:7:12.04:0,12,146 0/0:6,1:7:15.05:0,15,188 0/1:3,2:5:20.66:21,0,33 0/0:4,0:4:9.03:0,9,108 0/0:11,13:24:2.71:1,0,230 0/1:2,2:5:1.76:22,3,0 0/1:5,2:7:10.66:11,0,90 0/0:4,2:6:3.01:0,3,38 0/0:4,0:4:9.03:0,9,107 0/0:5,1:6:12.04:0,12,150 0/0:7,0:7:18.05:0,18,215 0/0:4,2:6:9.03:0,9,102 0/0:1,2:3:3.01:0,3,31 0/0:11,0:11:24.07:0,24,282 0/0:9,3:12:21.07:0,21,258 0/0:3,1:4:9.03:0,9,105 0/0:5,0:5:15.04:0,15,179 0/0:3,0:3:9.02:0,9,104 0/0:3,1:4:9.03:0,9,114 0/0:5,0:5:15.04:0,15,174 0/0:5,0:5:6.02:0,6,76 0/0:3,0:3:9.03:0,9,112 0/1:2,1:3:24.41:24,0,56 0/0:3,1:4:9.03:0,9,114 17 80051183 . A G 5208.69 . 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T C 60958.10 . AC=34;AF=0.405;AN=84;BaseQRankSum=15.772;DP=4824;DS;Dels=0.00;FS=7.074;HRun=2;HaplotypeScore=5.3348;InbreedingCoeff=0.2094;MQ=59.26;MQ0=0;MQRankSum=1.184;QD=19.93;ReadPosRankSum=2.443 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2476,196,0 1/1:0,84:84:99:2720,223,0 0/1:49,39:88:99:1061,0,1283 0/0:211,0:211:99:0,563,6857 0/1:112,103:215:99:2974,0,3249 1/1:1,202:203:99:6981,511,0 0/1:81,87:168:99:2306,0,2277 1/1:0,168:168:99:5773,442,0 0/0:88,0:88:99:0,226,2810 0/0:75,0:75:99:0,199,2394 0/1:38,34:73:99:931,0,983 0/0:99,0:99:99:0,247,3071 0/0:68,0:68:99:0,172,2113 0/0:90,0:90:99:0,235,2901 1/1:0,218:219:99:6921,560,0 1/1:0,78:78:99:2531,205,0 1/1:0,79:79:99:2617,211,0 0/1:30,32:62:99:961,0,779 0/1:92,56:148:99:1472,0,2363 1/1:0,181:181:99:5461,427,0 0/0:168,0:168:99:0,436,5430 0/0:106,0:106:99:0,274,3321 0/1:117,100:218:99:2732,0,3345 0/1:100,78:179:99:2068,0,2566 0/1:97,70:168:99:1737,0,2692 0/0:154,3:157:99:0,285,4907 0/1:32,20:52:99:535,0,883 1/1:0,67:67:99:2194,178,0 0/1:40,35:75:99:917,0,1158 0/0:77,0:77:99:0,211,2639 0/0:65,0:65:99:0,181,2188 0/1:81,80:162:99:2148,0,2079 0/0:108,0:109:99:0,286,3512 0/1:46,35:81:99:986,0,1394 0/1:38,34:72:99:862,0,1119 0/1:44,33:77:99:870,0,1188 0/0:148,0:149:99:0,370,4533 0/1:38,26:64:99:723,0,1054 0/0:67,0:67:99:0,190,2294 0/0:77,0:78:99:0,223,2728 0/0:65,1:66:99:0,124,1904 0/0:92,0:92:99:0,259,3203 17 80059690 . G A 4126.08 . AC=9;AF=0.107;AN=84;BaseQRankSum=-12.304;DP=1976;Dels=0.00;FS=2.713;HRun=0;HaplotypeScore=2.0240;InbreedingCoeff=0.1288;MQ=59.21;MQ0=0;MQRankSum=0.546;QD=9.46;ReadPosRankSum=-1.077 GT:AD:DP:GQ:PL 0/0:35,0:35:81.21:0,81,984 0/0:35,0:35:87.22:0,87,1038 0/0:32,0:32:90.24:0,90,1067 0/0:118,0:118:99:0,313,3980 0/0:85,0:86:99:0,226,2891 0/0:70,0:70:99:0,193,2410 0/0:61,0:61:99:0,169,2138 0/1:29,23:53:99:531,0,880 0/0:32,0:33:84.25:0,84,1015 0/0:27,0:27:69.19:0,69,839 0/1:20,7:29:99:132,0,588 0/0:30,0:30:75.20:0,75,863 0/0:25,0:25:69.21:0,69,861 0/0:44,0:45:99:0,123,1479 0/1:57,28:90:99:640,0,1513 0/0:29,0:29:66.18:0,66,774 1/1:1,27:33:35.18:761,35,0 0/0:28,0:28:75.17:0,75,862 0/0:62,0:63:99:0,153,1822 0/0:65,0:66:99:0,174,2141 0/0:76,0:80:99:0,180,2155 0/0:48,0:48:99:0,126,1534 0/1:53,43:102:99:1060,0,1528 0/1:26,22:49:99:471,0,823 0/1:30,18:49:99:423,0,943 0/0:41,0:42:99:0,114,1446 0/0:34,0:36:90.26:0,90,1088 0/0:28,1:29:34.62:0,35,715 0/1:22,8:31:99:108,0,641 0/0:36,0:36:96.23:0,96,1112 0/0:28,0:28:69.21:0,69,842 0/0:71,0:72:99:0,181,2217 0/0:65,0:66:99:0,168,2003 0/0:24,0:25:72.21:0,72,872 0/0:33,0:33:90.20:0,90,1052 0/0:25,0:26:60.14:0,60,712 0/0:60,0:64:99:0,156,1855 0/0:39,0:40:99:0,102,1242 0/0:30,0:31:90.23:0,90,1038 0/0:36,0:37:99:0,99,1162 0/0:28,0:28:81.23:0,81,974 0/0:36,0:36:93.25:0,93,1084 17 80085633 . A G 18751.63 . AC=39;AF=0.464;AN=84;BaseQRankSum=-18.787;DP=1310;Dels=0.00;FS=6.122;HRun=0;HaplotypeScore=0.5788;InbreedingCoeff=-0.0052;MQ=59.08;MQ0=0;MQRankSum=1.309;QD=19.02;ReadPosRankSum=-0.341 GT:AD:DP:GQ:PL 1/1:0,26:26:78.19:837,78,0 1/1:1,30:31:51.97:874,52,0 0/1:15,9:24:99:204,0,447 0/0:81,0:81:99:0,238,2902 0/1:39,31:70:99:894,0,1207 1/1:0,34:34:99:1165,99,0 0/1:16,17:33:99:484,0,486 1/1:0,31:31:87.26:1038,87,0 0/0:18,0:18:54.17:0,54,650 0/1:6,13:19:99:351,0,165 0/1:15,12:27:99:307,0,451 0/0:24,1:25:40.64:0,41,786 0/0:14,0:14:36.11:0,36,457 0/0:22,1:23:35.77:0,36,764 1/1:0,73:73:99:2295,208,0 1/1:0,18:18:54.14:590,54,0 1/1:0,16:16:48.13:527,48,0 0/1:9,12:21:99:331,0,267 0/1:18,22:40:99:537,0,519 1/1:0,48:48:99:1529,138,0 0/1:21,30:51:99:721,0,564 0/1:12,23:35:99:570,0,312 0/1:24,35:60:99:1059,0,694 0/1:20,12:32:99:317,0,641 0/1:28,11:39:99:290,0,847 0/0:23,0:23:69.21:0,69,834 0/1:9,5:14:99:125,0,243 1/1:0,21:21:63.14:675,63,0 0/1:15,10:25:99:231,0,464 0/0:25,0:25:75.22:0,75,889 0/0:21,0:21:63.19:0,63,758 0/1:22,19:41:99:456,0,664 0/0:25,0:25:75.23:0,75,901 0/1:10,5:15:99:118,0,321 0/1:10,8:18:99:205,0,315 0/1:7,14:21:99:334,0,193 0/1:20,31:51:99:835,0,499 0/1:10,13:23:99:362,0,264 0/1:11,18:29:99:491,0,318 0/0:25,0:25:69.21:0,69,839 0/0:19,0:19:54.17:0,54,664 0/0:25,0:25:75.22:0,75,890 17 80085648 . C G 802.69 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.592;DP=1522;Dels=0.00;FS=2.581;HRun=1;HaplotypeScore=0.8928;InbreedingCoeff=-0.0244;MQ=59.18;MQ0=0;MQRankSum=-0.479;QD=17.84;ReadPosRankSum=0.153 GT:AD:DP:GQ:PL 0/0:22,0:22:63.19:0,63,778 0/0:32,0:33:96.27:0,96,1170 0/0:24,0:24:69.21:0,69,860 0/0:97,0:97:99:0,265,3411 0/0:76,0:76:99:0,223,2939 0/0:44,0:44:99:0,129,1665 0/0:30,0:30:84.27:0,84,1082 0/0:36,0:36:96.30:0,96,1233 0/0:23,0:23:66.17:0,66,799 0/0:25,0:25:72.22:0,72,884 0/0:25,0:25:72.21:0,72,885 0/0:19,0:19:54.16:0,54,661 0/0:22,0:22:57.18:0,57,724 0/0:22,0:22:60.18:0,60,735 0/0:80,1:81:99:0,223,2713 0/0:17,0:18:51.16:0,51,635 0/0:31,0:31:84.27:0,84,1072 0/0:26,0:26:78.22:0,78,944 0/0:52,0:52:99:0,141,1677 0/0:53,0:54:99:0,153,1845 0/0:57,0:57:99:0,159,1922 0/0:41,0:41:99:0,111,1391 0/0:83,0:83:99:0,238,3096 0/0:38,0:38:99:0,108,1402 0/0:46,0:46:99:0,129,1672 0/0:35,0:35:96.30:0,96,1232 0/1:6,8:14:99:260,0,184 0/0:22,0:22:66.18:0,66,775 0/1:12,19:31:99:605,0,310 0/0:30,0:30:87.27:0,87,1072 0/0:19,0:19:48.15:0,48,604 0/0:51,0:51:99:0,144,1773 0/0:34,0:34:99:0,99,1213 0/0:18,0:18:45.12:0,45,550 0/0:16,0:16:48.15:0,48,607 0/0:24,0:24:66.17:0,66,786 0/0:64,1:65:99:0,162,1880 0/0:32,0:32:87.27:0,87,1079 0/0:36,0:36:99:0,99,1193 0/0:25,0:25:72.22:0,72,895 0/0:20,0:20:51.11:0,51,595 0/0:25,0:25:69.20:0,69,840 17 80085703 . G T 38630.24 . AC=39;AF=0.464;AN=84;BaseQRankSum=-26.239;DP=2737;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.9301;InbreedingCoeff=-0.0051;MQ=59.27;MQ0=0;MQRankSum=0.969;QD=18.65;ReadPosRankSum=-0.272 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1316,111,0 1/1:0,49:49:99:1663,135,0 0/1:24,17:41:99:417,0,760 0/0:187,0:187:99:0,500,6600 0/1:79,66:145:99:1759,0,2358 1/1:0,95:95:99:3221,262,0 0/1:50,29:79:99:793,0,1415 1/1:0,71:71:99:2160,169,0 0/0:45,1:46:91.74:0,92,1495 0/1:21,19:40:99:552,0,573 0/1:21,11:32:99:306,0,634 0/0:41,1:42:89.78:0,90,1434 0/0:34,0:34:99:0,99,1228 0/0:38,1:39:77.37:0,77,1359 1/1:0,148:148:99:4590,373,0 1/1:0,32:32:90.27:1079,90,0 1/1:1,44:45:78.79:1408,79,0 0/1:17,25:43:99:768,0,469 0/1:43,45:88:99:1333,0,1223 1/1:0,93:93:99:3019,244,0 0/1:38,44:82:99:1278,0,1096 0/1:28,39:67:99:1014,0,823 0/1:103,87:190:99:2289,0,2992 0/1:36,31:67:99:885,0,985 0/1:64,30:94:99:717,0,1940 0/0:87,0:87:99:0,220,2879 0/1:15,14:29:99:405,0,455 1/1:0,45:45:99:1477,120,0 0/1:30,26:56:99:615,0,901 0/0:45,0:45:99:0,114,1447 0/0:31,0:31:81.26:0,81,1032 0/1:49,55:104:99:1447,0,1391 0/0:67,0:67:99:0,178,2263 0/1:23,16:39:99:408,0,612 0/1:17,18:35:99:519,0,481 0/1:18,21:39:99:651,0,514 0/1:47,46:93:99:1252,0,1113 0/1:19,30:49:99:783,0,551 0/1:24,19:43:99:507,0,723 0/0:30,0:30:87.27:0,87,1077 0/0:29,0:29:78.25:0,78,990 0/0:29,0:29:81.25:0,81,1014 17 80151859 . G A 1077.86 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.689;DP=911;Dels=0.00;FS=9.533;HRun=0;HaplotypeScore=0.4728;InbreedingCoeff=-0.0244;MQ=59.00;MQ0=0;MQRankSum=-0.249;QD=13.82;ReadPosRankSum=-0.436 GT:AD:DP:GQ:PL 0/0:10,0:10:30.06:0,30,324 0/0:23,0:23:69.17:0,69,747 0/0:12,0:12:36.08:0,36,378 0/1:13,17:30:99:522,0,329 0/0:23,0:23:69.20:0,69,832 0/0:19,0:19:54.13:0,54,611 0/0:14,0:14:36.10:0,36,416 0/0:27,0:27:81.20:0,81,925 0/0:23,0:23:63.13:0,63,652 0/0:14,0:14:42.08:0,42,443 0/0:14,0:14:39.08:0,39,410 0/0:19,0:19:54.13:0,54,588 0/0:11,0:11:27.05:0,27,286 0/0:18,0:18:54.07:0,54,551 0/0:37,0:38:99:0,105,1127 0/0:18,0:18:51.13:0,51,557 0/0:20,0:20:60.15:0,60,673 0/0:21,0:21:60.14:0,60,636 0/0:29,0:29:81.18:0,81,870 0/0:32,0:32:90.19:0,90,956 0/0:29,0:30:84.19:0,84,907 0/0:25,0:25:63.13:0,63,669 0/1:26,22:48:99:619,0,678 0/0:27,0:28:78.21:0,78,897 0/0:35,0:35:99:0,102,1210 0/0:20,0:20:57.16:0,57,657 0/0:17,0:17:45.10:0,45,475 0/0:14,0:14:42.09:0,42,455 0/0:12,0:12:36.09:0,36,386 0/0:20,0:20:57.14:0,57,620 0/0:13,0:13:36.09:0,36,399 0/0:20,0:20:57.12:0,57,610 0/0:30,0:30:90.21:0,90,981 0/0:13,0:13:36.09:0,36,386 0/0:15,0:15:45.12:0,45,493 0/0:17,0:17:42.10:0,42,457 0/0:37,0:38:99:0,99,1077 0/0:25,0:25:72.15:0,72,760 0/0:23,0:23:63.16:0,63,691 0/0:18,0:18:42.11:0,42,468 0/0:19,0:19:54.12:0,54,571 0/0:16,0:16:45.12:0,45,492 17 80151881 . G A 18270.73 . AC=45;AF=0.536;AN=84;BaseQRankSum=-12.664;DP=1207;Dels=0.00;FS=3.545;HRun=0;HaplotypeScore=1.0331;InbreedingCoeff=-0.0051;MQ=58.95;MQ0=0;MQRankSum=0.533;QD=19.52;ReadPosRankSum=-0.163 GT:AD:DP:GQ:PL 0/0:14,0:14:42.13:0,42,514 0/0:28,0:28:78.23:0,78,949 0/1:7,7:14:99:206,0,217 1/1:0,47:47:99:1529,132,0 0/1:21,26:47:99:738,0,643 0/0:22,0:22:63.21:0,63,846 0/1:12,15:27:99:456,0,353 0/0:37,0:37:99:0,108,1377 1/1:0,26:26:72.19:826,72,0 0/1:11,7:18:99:165,0,316 0/1:13,13:26:99:369,0,354 1/1:0,20:20:57.17:681,57,0 1/1:0,14:14:42.11:481,42,0 1/1:0,21:21:60.16:692,60,0 0/0:58,0:59:99:0,156,1908 0/0:21,0:21:60.15:0,60,705 0/0:28,0:28:72.19:0,72,860 0/1:18,14:32:99:359,0,512 0/1:20,23:43:99:586,0,507 0/0:44,0:44:99:0,129,1582 0/1:20,15:35:99:431,0,468 0/1:19,11:31:99:277,0,607 0/1:31,25:56:99:722,0,938 0/1:17,22:39:99:626,0,524 0/1:27,16:43:99:442,0,960 1/1:0,34:34:96.27:1123,96,0 0/1:8,9:17:99:231,0,248 0/0:18,0:18:51.16:0,51,635 0/1:7,10:17:99:287,0,196 1/1:0,27:27:81.22:930,81,0 1/1:0,18:18:51.15:613,51,0 0/1:19,11:30:99:303,0,579 1/1:0,32:32:93.24:1062,93,0 0/1:9,8:17:99:210,0,271 0/1:10,11:21:99:297,0,319 0/1:14,11:25:99:293,0,398 0/1:18,17:35:99:419,0,509 0/1:14,10:24:99:290,0,360 0/1:18,12:30:99:268,0,584 1/1:0,18:18:51.13:604,51,0 1/1:0,28:28:81.19:924,81,0 1/1:0,24:24:69.21:831,69,0 17 80285076 . T C 304.60 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.123;DP=644;Dels=0.00;FS=3.761;HRun=2;HaplotypeScore=0.3791;InbreedingCoeff=-0.0291;MQ=58.89;MQ0=0;MQRankSum=0.295;QD=9.23;ReadPosRankSum=0.367 GT:AD:DP:GQ:PL 0/0:16,0:16:39.13:0,39,505 0/0:6,0:6:15.05:0,15,192 0/0:12,0:12:30.10:0,30,379 0/0:32,0:32:66.21:0,66,883 0/0:26,0:26:57.19:0,57,769 0/0:29,0:29:69.20:0,69,897 0/0:18,0:18:39.13:0,39,528 0/0:24,0:24:66.20:0,66,831 0/0:6,0:6:12.03:0,12,148 0/0:7,0:7:18.06:0,18,234 0/0:14,0:14:36.11:0,36,458 0/0:4,0:4:12.03:0,12,135 0/0:7,0:7:21.07:0,21,258 0/0:9,0:9:24.08:0,24,306 0/0:42,0:42:99:0,108,1348 0/0:14,0:14:36.11:0,36,461 0/0:4,0:4:12.04:0,12,155 0/0:9,0:9:24.08:0,24,306 0/0:19,0:19:48.15:0,48,606 0/0:25,0:25:63.19:0,63,793 0/0:17,0:19:42.13:0,42,542 0/0:13,0:13:33.10:0,33,417 0/0:40,0:40:96.30:0,96,1245 0/0:17,0:17:36.12:0,36,488 0/1:15,11:26:99:302,0,443 0/0:31,0:31:72.22:0,72,937 0/0:5,0:5:15.04:0,15,176 0/0:13,0:13:36.11:0,36,446 0/0:7,0:7:21.06:0,21,252 0/0:4,0:4:12.04:0,12,150 0/0:6,0:7:18.04:0,18,206 0/0:22,0:22:54.17:0,54,691 0/0:9,0:9:24.07:0,24,294 0/0:12,0:12:36.11:0,36,452 0/0:9,0:9:27.06:0,27,319 0/0:15,0:15:45.14:0,45,557 0/0:13,0:13:33.10:0,33,413 0/1:4,3:7:64.50:65,0,131 0/0:19,0:19:48.15:0,48,619 0/0:14,0:14:36.11:0,36,451 0/0:11,0:11:24.08:0,24,317 0/0:7,0:7:21.06:0,21,254 17 80285085 . T G 342.40 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.852;DP=613;Dels=0.00;FS=1.078;HRun=2;HaplotypeScore=0.3230;InbreedingCoeff=-0.0302;MQ=58.75;MQ0=0;MQRankSum=0.930;QD=9.25;ReadPosRankSum=-0.402 GT:AD:DP:GQ:PL 0/0:11,0:11:30.09:0,30,367 0/0:6,0:6:15.05:0,15,190 0/0:11,0:11:30.09:0,30,359 0/0:34,0:34:75.23:0,75,977 0/0:22,0:22:54.17:0,54,692 0/0:32,0:32:84.26:0,84,1052 0/0:18,1:19:39.13:0,39,531 0/0:23,0:23:57.18:0,57,721 0/0:6,0:6:18.05:0,18,212 0/0:8,0:8:21.07:0,21,263 0/0:11,0:11:27.09:0,27,347 0/0:5,0:5:15.05:0,15,183 0/0:6,0:6:18.05:0,18,210 0/0:8,0:8:21.06:0,21,259 0/0:42,0:42:99:0,108,1318 0/0:14,0:14:39.11:0,39,469 0/0:3,0:3:9.03:0,9,111 0/0:10,0:10:27.09:0,27,344 0/0:19,0:19:45.14:0,45,550 0/0:25,0:25:63.19:0,63,773 0/0:19,0:19:45.14:0,45,567 0/0:11,0:11:27.08:0,27,342 0/0:37,0:37:84.26:0,84,1083 0/0:16,0:16:36.11:0,36,470 0/1:16,11:27:99:327,0,437 0/0:31,0:31:72.23:0,72,925 0/0:6,0:6:15.05:0,15,193 0/0:12,0:12:33.10:0,33,399 0/0:9,0:9:27.08:0,27,317 0/0:3,0:3:9.03:0,9,109 0/0:4,0:4:12.03:0,12,137 0/0:20,0:20:48.14:0,48,610 0/0:9,0:9:21.06:0,21,253 0/0:12,0:12:33.10:0,33,406 0/0:11,0:11:27.08:0,27,331 0/0:11,0:11:33.10:0,33,393 0/0:6,0:6:18.06:0,18,217 0/1:7,3:10:77.76:78,0,213 0/0:14,0:14:42.13:0,42,505 0/0:12,0:12:33.10:0,33,412 0/0:9,0:9:24.07:0,24,294 0/0:9,0:9:24.08:0,24,301 17 80352300 . C T 2034.23 . AC=1;AF=0.012;AN=84;BaseQRankSum=6.650;DP=7084;DS;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=5.6281;InbreedingCoeff=-0.0120;MQ=59.11;MQ0=0;MQRankSum=-0.376;QD=14.53;ReadPosRankSum=-0.739 GT:AD:DP:GQ:PL 0/0:157,0:157:99:0,439,4823 0/0:150,0:150:99:0,421,4670 0/0:156,0:156:99:0,427,4754 0/0:187,0:187:99:0,535,6302 0/0:224,0:224:99:0,650,7774 0/0:205,0:205:99:0,563,6812 0/0:157,0:157:99:0,445,5377 0/0:173,0:173:99:0,478,5786 0/0:163,1:164:99:0,418,4987 0/0:139,0:140:99:0,400,4394 0/0:145,0:145:99:0,415,4581 0/0:148,0:148:99:0,409,4493 0/0:143,0:143:99:0,385,4319 0/0:145,0:145:99:0,412,4537 0/0:243,0:244:99:0,658,7183 0/0:145,0:145:99:0,397,4367 0/0:149,0:149:99:0,418,4662 0/1:70,69:140:99:2080,0,1683 0/0:243,1:245:99:0,647,7145 0/0:250,0:250:99:0,698,7798 0/0:245,1:246:99:0,631,7370 0/0:143,0:143:99:0,412,4586 0/0:229,0:229:99:0,659,8078 0/0:159,0:159:99:0,436,5247 0/0:181,0:181:99:0,523,6330 0/0:150,0:150:99:0,421,5009 0/0:138,0:138:99:0,403,4387 0/0:127,0:127:99:0,361,3963 0/0:129,0:129:99:0,367,4066 0/0:143,0:143:99:0,409,4553 0/0:125,0:125:99:0,355,3879 0/0:250,0:250:99:0,701,7813 0/0:163,0:163:99:0,466,5178 0/0:158,0:158:99:0,457,5059 0/0:138,0:138:99:0,385,4279 0/0:163,0:163:99:0,448,5102 0/0:230,0:231:99:0,638,7195 0/0:145,0:145:99:0,409,4497 0/0:142,0:142:99:0,400,4380 0/0:157,0:157:99:0,457,5032 0/0:135,0:135:99:0,367,4119 0/0:164,0:164:99:0,469,5177 17 80352303 . G A 76593.37 . AC=31;AF=0.369;AN=84;BaseQRankSum=-40.339;DP=7021;DS;Dels=0.00;FS=9.583;HRun=0;HaplotypeScore=5.2853;InbreedingCoeff=0.1309;MQ=59.15;MQ0=0;MQRankSum=1.954;QD=19.99;ReadPosRankSum=1.122 GT:AD:DP:GQ:PL 0/1:67,91:158:99:2566,0,1975 0/1:90,65:155:99:1720,0,2608 0/0:155,0:155:99:0,439,5418 0/1:105,87:192:99:2305,0,3488 0/0:214,1:216:99:0,596,8330 1/1:0,206:206:99:7239,590,0 0/1:72,84:156:99:2398,0,2278 1/1:0,172:173:99:5870,490,0 0/1:93,74:167:99:1936,0,2805 0/1:68,71:140:99:2009,0,1972 0/0:143,0:143:99:0,415,5139 0/0:140,0:140:99:0,394,4951 0/0:133,0:133:99:0,376,4706 0/0:145,0:145:99:0,406,5057 0/0:243,0:243:99:0,692,8404 0/0:142,0:142:99:0,397,4858 0/1:82,70:152:99:1942,0,2510 0/1:63,74:137:99:2179,0,1831 0/0:236,1:237:99:0,606,7780 0/0:246,0:246:99:0,707,8849 0/0:236,1:238:99:0,659,8133 0/1:78,68:146:99:1904,0,2185 1/1:2,230:232:99:7845,592,0 0/0:157,0:157:99:0,439,5838 0/0:185,0:185:99:0,536,7071 0/1:81,60:141:99:1629,0,2636 0/1:63,63:126:99:1764,0,1957 1/1:0,128:129:99:4362,373,0 0/0:131,0:131:99:0,367,4655 0/1:68,72:140:99:2003,0,2028 0/0:119,0:120:99:0,325,4045 0/0:248,0:249:99:0,698,8681 0/1:83,81:164:99:2316,0,2490 1/1:0,162:162:99:5608,475,0 1/1:2,129:131:99:4251,297,0 1/1:3,159:162:99:5192,373,0 0/1:109,108:219:99:3099,0,3018 0/1:74,74:148:99:2081,0,2130 0/0:145,0:145:99:0,418,5145 0/1:86,78:164:99:2203,0,2617 0/1:55,75:131:99:2173,0,1400 0/0:163,1:164:99:0,429,5721 17 80367275 . T C 1145.26 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.713;DP=2183;Dels=0.00;FS=1.233;HRun=4;HaplotypeScore=0.9799;InbreedingCoeff=-0.0244;MQ=59.10;MQ0=0;MQRankSum=-1.059;QD=11.34;ReadPosRankSum=-2.452 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,105,1314 0/0:47,0:47:99:0,117,1502 0/0:53,0:53:99:0,132,1692 0/0:81,0:81:99:0,202,2639 0/0:75,0:75:99:0,184,2410 0/0:55,0:55:99:0,138,1857 0/0:65,0:65:99:0,163,2141 0/0:49,0:49:99:0,129,1702 0/0:42,0:42:99:0,108,1379 0/0:36,0:36:93.26:0,93,1165 0/0:46,0:46:99:0,111,1414 0/0:28,0:28:84.26:0,84,1040 0/0:34,0:34:93.29:0,93,1162 0/0:40,0:40:99:0,114,1414 0/0:170,0:171:99:0,436,5550 0/0:39,0:39:99:0,105,1299 0/0:30,0:30:81.26:0,81,1022 0/0:45,0:45:99:0,117,1481 0/0:62,0:62:99:0,163,2052 0/0:74,0:74:99:0,193,2441 0/0:57,0:57:99:0,144,1827 0/0:39,0:39:99:0,111,1389 0/0:88,0:88:99:0,238,3109 0/0:43,0:43:99:0,117,1541 0/1:31,28:59:99:680,0,889 0/0:44,0:44:99:0,114,1477 0/0:29,0:29:81.25:0,81,1012 0/0:38,0:38:99:0,105,1323 0/0:36,0:36:99:0,102,1255 0/0:56,1:57:99:0,120,1876 0/0:43,0:43:99:0,117,1470 0/0:56,0:56:99:0,141,1796 0/0:36,0:36:96.30:0,96,1210 0/0:48,0:48:99:0,141,1736 0/0:46,0:46:99:0,123,1525 0/0:50,0:51:99:0,132,1676 0/0:83,0:84:99:0,208,2635 0/0:37,0:37:99:0,105,1316 0/0:58,0:58:99:0,144,1841 0/0:48,0:48:99:0,129,1589 0/1:23,19:42:99:528,0,684 0/0:34,0:34:90.29:0,90,1153 17 80439066 . G A 1115.93 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.052;DP=3058;DS;Dels=0.00;FS=5.456;HRun=0;HaplotypeScore=1.9983;InbreedingCoeff=-0.0120;MQ=58.93;MQ0=0;MQRankSum=-0.251;QD=15.50;ReadPosRankSum=0.190 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,129,1575 0/0:51,0:52:99:0,138,1687 0/0:48,0:48:99:0,135,1582 0/0:148,0:148:99:0,400,4946 0/0:156,0:156:99:0,424,5333 0/0:108,0:108:99:0,289,3624 0/0:94,0:94:99:0,259,3292 0/0:104,0:104:99:0,280,3494 0/0:47,0:47:99:0,132,1602 0/0:57,0:59:99:0,150,1762 0/0:49,0:49:99:0,138,1636 0/0:50,0:50:99:0,141,1673 0/0:37,0:37:96.29:0,96,1185 0/0:56,0:56:99:0,159,1870 0/0:140,0:142:99:0,370,4413 0/1:30,42:72:99:1162,0,787 0/0:50,0:50:99:0,132,1635 0/0:46,0:46:99:0,129,1523 0/0:90,0:90:99:0,259,3002 0/0:95,0:95:99:0,253,3083 0/0:102,0:104:99:0,280,3327 0/0:52,0:52:99:0,144,1722 0/0:156,0:157:99:0,412,5246 0/0:79,0:79:99:0,220,2760 0/0:105,0:106:99:0,280,3582 0/0:86,0:86:99:0,226,2859 0/0:39,0:39:99:0,108,1301 0/0:51,0:52:99:0,144,1740 0/0:47,0:47:99:0,132,1601 0/0:61,0:62:99:0,174,2029 0/0:67,0:67:99:0,186,2178 0/0:69,0:70:99:0,186,2221 0/0:48,0:49:99:0,129,1526 0/0:45,0:45:99:0,129,1533 0/0:58,0:58:99:0,168,2018 0/0:54,0:54:99:0,147,1770 0/0:84,0:85:99:0,220,2591 0/0:55,1:56:99:0,138,1863 0/0:60,0:60:99:0,168,1980 0/0:65,0:65:99:0,171,2062 0/0:48,0:48:99:0,135,1618 0/0:65,0:65:99:0,181,2186 17 80543901 . C T 856.61 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.235;DP=1734;Dels=0.00;FS=2.554;HRun=1;HaplotypeScore=1.6946;InbreedingCoeff=-0.0244;MQ=58.45;MQ0=0;MQRankSum=1.214;QD=14.77;ReadPosRankSum=1.635 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,105,1199 0/0:37,0:37:99:0,102,1163 0/0:23,0:23:69.18:0,69,759 0/0:82,0:82:99:0,235,2834 0/0:75,0:75:99:0,223,2762 0/0:39,0:39:99:0,111,1329 0/0:38,0:38:99:0,111,1345 0/0:32,0:32:93.27:0,93,1118 0/0:31,0:31:81.23:0,81,961 0/0:30,0:30:90.23:0,90,1000 0/0:34,0:34:96.26:0,96,1090 0/0:32,0:32:93.23:0,93,1025 0/0:31,0:31:78.20:0,78,877 0/0:35,0:35:99:0,99,1112 0/0:115,0:115:99:0,310,3452 0/0:32,0:32:96.26:0,96,1081 0/0:35,0:35:90.21:0,90,996 0/0:36,0:36:99:0,105,1153 0/0:57,0:57:99:0,153,1694 0/0:55,0:55:99:0,159,1777 0/0:34,0:34:87.24:0,87,1011 0/0:41,0:41:99:0,114,1326 0/0:64,0:64:99:0,184,2254 0/0:27,0:27:75.23:0,75,925 0/0:44,0:44:99:0,129,1565 0/0:27,0:27:78.23:0,78,948 0/0:30,0:30:87.21:0,87,992 0/0:37,0:37:99:0,108,1213 0/0:38,0:38:99:0,111,1241 0/0:32,0:32:90.24:0,90,1009 0/0:41,0:42:99:0,120,1327 0/0:56,0:56:99:0,156,1781 0/0:40,0:40:99:0,108,1190 0/0:42,1:44:99:0,123,1370 0/0:49,0:49:99:0,141,1579 0/0:30,0:30:87.21:0,87,954 0/0:41,0:41:99:0,120,1328 0/0:46,0:46:99:0,132,1525 0/0:34,0:34:96.24:0,96,1083 0/1:14,18:32:99:541,0,377 0/1:13,13:26:99:378,0,351 0/0:36,0:36:99:0,102,1126 17 80543936 . C T 645.06 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.745;DP=1546;Dels=0.00;FS=2.798;HRun=0;HaplotypeScore=1.2774;InbreedingCoeff=-0.0244;MQ=58.06;MQ0=0;MQRankSum=1.699;QD=13.16;ReadPosRankSum=0.588 GT:AD:DP:GQ:PL 0/0:31,0:31:87.25:0,87,1013 0/0:28,0:28:81.21:0,81,914 0/0:11,0:11:30.08:0,30,340 0/0:81,0:81:99:0,208,2598 0/0:63,0:63:99:0,162,2035 0/0:45,0:46:99:0,129,1557 0/0:39,0:39:99:0,111,1316 0/0:28,0:28:81.25:0,81,1002 0/0:28,0:28:75.22:0,75,898 0/0:27,0:27:78.20:0,78,874 0/0:25,0:25:75.20:0,75,848 0/0:24,0:24:66.18:0,66,754 0/0:23,0:23:60.15:0,60,660 0/0:46,0:46:99:0,132,1504 0/0:84,0:84:99:0,220,2519 0/0:32,0:32:87.21:0,87,975 0/0:33,0:33:96.24:0,96,1059 0/0:35,0:35:99:0,99,1124 0/0:61,0:61:99:0,162,1810 0/0:59,0:60:99:0,159,1860 0/0:40,0:40:99:0,114,1260 0/0:40,0:42:99:0,111,1279 0/0:69,0:69:99:0,181,2263 0/0:29,0:29:75.22:0,75,942 0/0:39,0:39:99:0,102,1272 0/0:25,0:25:66.20:0,66,824 0/0:30,0:30:87.22:0,87,981 0/0:30,0:30:90.19:0,90,972 0/0:30,0:30:84.22:0,84,946 0/0:24,0:24:72.17:0,72,801 0/0:39,0:39:99:0,108,1221 0/0:47,0:47:99:0,120,1389 0/0:26,0:26:75.19:0,75,837 0/0:33,0:33:93.25:0,93,1060 0/0:31,0:31:81.20:0,81,887 0/0:20,0:20:54.10:0,54,578 0/0:50,0:50:99:0,129,1482 0/0:34,0:34:93.25:0,93,1084 0/0:28,0:28:84.22:0,84,942 0/1:14,10:24:99:274,0,370 0/0:25,0:25:63.17:0,63,722 0/1:11,14:25:99:434,0,289 17 80544018 . C T 226.53 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.811;DP=1017;Dels=0.00;FS=1.315;HRun=0;HaplotypeScore=0.8401;InbreedingCoeff=-0.0121;MQ=55.81;MQ0=0;MQRankSum=2.826;QD=13.33;ReadPosRankSum=2.299 GT:AD:DP:GQ:PL 0/0:20,0:20:54.13:0,54,611 0/0:24,0:24:63.17:0,63,740 0/0:13,0:13:24.06:0,24,285 0/0:40,0:40:99:0,111,1333 0/0:61,0:61:99:0,168,2031 0/0:33,0:34:93.29:0,93,1180 0/0:26,0:26:66.18:0,66,799 0/0:22,0:22:57.16:0,57,697 0/0:16,0:16:48.11:0,48,551 0/0:12,0:12:36.08:0,36,392 0/0:18,0:18:54.16:0,54,643 0/0:21,0:21:57.14:0,57,656 0/0:18,0:18:51.14:0,51,584 0/0:23,0:23:63.17:0,63,721 0/0:71,0:71:99:0,199,2262 0/0:26,0:26:75.21:0,75,849 0/0:17,0:17:48.13:0,48,540 0/0:15,0:15:39.10:0,39,446 0/0:32,0:32:81.22:0,81,944 0/0:36,0:36:90.25:0,90,1040 0/0:24,0:24:63.18:0,63,740 0/0:21,0:21:60.14:0,60,656 0/0:55,0:55:99:0,147,1809 0/0:24,0:24:57.16:0,57,719 0/0:29,0:29:72.20:0,72,888 0/0:15,0:15:42.09:0,42,491 0/0:14,0:14:42.11:0,42,460 0/0:14,0:14:42.12:0,42,504 0/0:12,0:12:33.09:0,33,376 0/0:15,0:15:42.11:0,42,476 0/0:24,0:24:66.19:0,66,781 0/0:31,0:32:84.19:0,84,966 0/1:8,9:17:99:273,0,204 0/0:19,0:19:51.13:0,51,581 0/0:20,0:20:57.14:0,57,641 0/0:18,0:18:51.15:0,51,604 0/0:33,0:33:90.24:0,90,1040 0/0:11,0:11:33.09:0,33,383 0/0:23,0:23:63.16:0,63,708 0/0:15,0:15:45.13:0,45,514 0/0:25,0:25:60.17:0,60,737 0/0:12,0:12:30.08:0,30,341 17 80544069 . A G 13.19 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.145;DP=1044;Dels=0.00;FS=99.505;HRun=1;HaplotypeScore=1.5575;InbreedingCoeff=-0.0509;MQ=52.92;MQ0=19;MQRankSum=-10.021;QD=0.12;ReadPosRankSum=-5.596 GT:AD:DP:GQ:PL 0/0:24,0:24:66.20:0,66,827 0/0:15,0:15:45.13:0,45,546 0/0:8,2:10:0.48:9,0,235 0/0:38,0:38:96.31:0,96,1259 0/0:47,0:47:99:0,123,1565 0/0:30,1:31:87.27:0,87,1113 0/0:23,0:23:69.21:0,69,872 0/0:13,0:13:33.10:0,33,427 0/0:22,1:23:27.06:0,27,704 0/0:14,2:16:23.45:0,23,500 0/0:16,1:17:20.48:0,20,531 0/0:18,1:19:51.15:0,51,614 0/0:13,0:13:36.12:0,36,460 0/0:26,1:27:69.21:0,69,870 0/1:92,15:107:55.22:55,0,2608 0/0:25,1:26:72.22:0,72,878 0/0:11,1:12:33.11:0,33,416 0/0:14,1:15:5.69:0,6,430 0/0:29,0:29:78.21:0,78,961 0/0:32,1:33:75.23:0,75,938 0/0:31,1:32:87.26:0,87,1090 0/0:15,2:17:42.13:0,42,511 0/0:46,0:46:99:0,129,1660 0/0:17,0:17:48.16:0,48,630 0/0:20,0:20:54.17:0,54,700 0/0:12,0:12:33.11:0,33,438 0/0:15,0:15:45.14:0,45,555 0/0:30,1:31:54.63:0,55,991 0/0:17,0:18:45.14:0,45,567 0/0:19,1:20:20.72:0,21,584 0/0:17,3:20:23.49:0,23,570 0/0:27,8:35:0.19:13,0,877 0/0:14,1:15:9.62:0,10,443 0/0:18,1:19:20.72:0,21,578 0/0:19,4:23:23.73:0,24,625 0/0:20,0:20:54.14:0,54,652 0/0:41,5:46:0.66:8,0,1168 0/0:18,0:18:48.15:0,48,605 0/0:25,1:26:66.19:0,66,799 0/0:18,1:19:23.71:0,24,582 0/0:23,1:24:63.19:0,63,776 0/0:12,1:13:33.10:0,33,417 17 80676855 . A T 1336.24 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.601;DP=4441;DS;Dels=0.00;FS=3.211;HRun=0;HaplotypeScore=2.2719;InbreedingCoeff=-0.0244;MQ=56.74;MQ0=0;MQRankSum=3.271;QD=11.42;ReadPosRankSum=-0.410 GT:AD:DP:GQ:PL 0/0:83,0:83:99:0,238,2941 0/0:81,0:81:99:0,232,2850 0/0:64,0:64:99:0,187,2286 0/0:241,0:241:99:0,635,8026 0/0:198,0:198:99:0,560,7013 0/0:174,0:175:99:0,475,6132 0/0:122,0:122:99:0,337,4342 0/0:172,0:172:99:0,454,5728 0/0:79,0:79:99:0,229,2760 0/0:72,0:72:99:0,202,2475 0/0:70,0:70:99:0,202,2489 0/0:71,0:72:99:0,199,2438 0/0:64,0:64:99:0,187,2310 0/0:68,0:68:99:0,196,2381 0/0:246,0:247:99:0,677,8482 0/0:72,0:72:99:0,211,2584 0/0:61,0:62:99:0,178,2182 0/0:88,0:89:99:0,241,2979 0/0:146,0:146:99:0,403,4960 0/0:133,0:133:99:0,352,4400 0/0:138,0:138:99:0,367,4565 0/0:103,0:103:99:0,283,3501 0/0:246,0:246:99:0,686,8647 0/0:120,0:120:99:0,340,4342 0/0:145,0:145:99:0,388,4907 0/0:149,0:149:99:0,406,5140 0/1:32,24:56:99:663,0,942 0/1:34,27:61:99:735,0,990 0/0:60,0:60:99:0,169,2081 0/0:72,0:72:99:0,199,2442 0/0:62,0:62:99:0,181,2225 0/0:120,0:120:99:0,325,4064 0/0:63,0:63:99:0,181,2214 0/0:75,0:77:99:0,211,2585 0/0:68,0:68:99:0,199,2445 0/0:71,0:71:99:0,205,2542 0/0:141,0:141:99:0,397,4942 0/0:81,0:81:99:0,226,2820 0/0:76,0:76:99:0,223,2763 0/0:69,0:69:99:0,199,2450 0/0:80,0:80:99:0,220,2706 0/0:72,0:72:99:0,202,2517 17 80696410 . A C 66490.75 . AC=84;AF=1.000;AN=84;BaseQRankSum=-1.518;DP=2017;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.2216;InbreedingCoeff=-0.0000;MQ=58.91;MQ0=0;MQRankSum=1.470;QD=32.97;ReadPosRankSum=-1.674 GT:AD:DP:GQ:PL 1/1:0,31:31:84.19:915,84,0 1/1:0,20:20:60.17:704,60,0 1/1:0,28:28:78.20:890,78,0 1/1:0,149:149:99:5091,433,0 1/1:0,121:121:99:4202,352,0 1/1:0,80:80:99:2598,217,0 1/1:0,71:71:99:2365,199,0 1/1:1,67:68:99:2330,162,0 1/1:0,26:26:78.21:881,78,0 1/1:0,31:31:81.19:935,81,0 1/1:0,30:30:84.22:968,84,0 1/1:0,26:26:75.18:854,75,0 1/1:0,19:19:57.14:635,57,0 1/1:0,32:32:90.24:1055,90,0 1/1:0,103:103:99:3206,280,0 1/1:0,40:40:99:1350,117,0 1/1:0,30:30:84.21:979,84,0 1/1:0,30:30:90.24:1032,90,0 1/1:0,57:57:99:1833,165,0 1/1:0,39:39:99:1183,105,0 1/1:0,44:44:99:1355,123,0 1/1:0,36:36:99:1163,105,0 1/1:0,134:134:99:4600,379,0 1/1:0,69:69:99:2334,199,0 1/1:0,101:101:99:3317,283,0 1/1:0,67:67:99:2371,196,0 1/1:0,23:23:63.16:710,63,0 1/1:0,25:25:69.18:785,69,0 1/1:0,22:22:63.17:736,63,0 1/1:0,33:33:93.26:1076,93,0 1/1:0,22:22:63.16:693,63,0 1/1:0,43:43:99:1368,120,0 1/1:0,47:47:99:1502,135,0 1/1:0,40:40:99:1359,117,0 1/1:0,29:29:87.22:986,87,0 1/1:0,38:39:99:1156,99,0 1/1:0,44:45:99:1365,123,0 1/1:0,28:28:81.21:916,81,0 1/1:0,36:36:99:1251,108,0 1/1:0,43:43:99:1449,126,0 1/1:0,25:25:69.20:818,69,0 1/1:0,35:35:99:1179,105,0 17 80828203 . C T 2969.28 . AC=5;AF=0.060;AN=84;BaseQRankSum=5.737;DP=1387;Dels=0.00;FS=8.407;HRun=2;HaplotypeScore=1.2946;InbreedingCoeff=-0.0633;MQ=59.18;MQ0=0;MQRankSum=1.435;QD=14.77;ReadPosRankSum=1.572 GT:AD:DP:GQ:PL 0/0:20,0:20:48.13:0,48,565 0/0:17,0:17:45.13:0,45,529 0/0:20,0:20:60.12:0,60,654 0/0:60,0:60:99:0,165,1931 0/0:56,0:56:99:0,156,1853 0/0:54,0:55:99:0,156,1865 0/0:32,0:32:90.25:0,90,1078 0/0:41,0:41:99:0,111,1317 0/0:24,0:25:66.16:0,66,745 0/0:39,0:39:99:0,99,1135 0/0:17,0:17:45.12:0,45,516 0/0:22,0:22:57.13:0,57,656 0/1:7,18:25:99:514,0,120 0/0:24,0:25:60.16:0,60,706 0/0:78,0:78:99:0,214,2443 0/0:35,0:35:99:0,99,1135 0/1:19,9:28:99:242,0,522 0/0:15,0:15:42.09:0,42,471 0/0:48,0:48:99:0,126,1456 0/0:50,0:50:99:0,132,1489 0/0:51,0:51:99:0,135,1579 0/0:32,1:33:87.21:0,87,977 0/1:32,37:69:99:1075,0,889 0/1:17,25:42:99:763,0,456 0/0:43,0:43:99:0,120,1415 0/1:21,16:37:99:472,0,595 0/0:16,0:16:45.12:0,45,520 0/0:27,0:27:75.20:0,75,859 0/0:22,0:22:57.14:0,57,643 0/0:28,0:28:78.21:0,78,881 0/0:28,0:28:72.18:0,72,814 0/0:35,0:35:99:0,99,1094 0/0:38,0:38:99:0,105,1139 0/0:27,0:27:75.21:0,75,872 0/0:16,0:16:36.09:0,36,404 0/0:25,0:25:75.19:0,75,850 0/0:37,0:38:96.26:0,96,1129 0/0:18,0:18:51.12:0,51,570 0/0:20,0:20:57.14:0,57,622 0/0:24,0:24:72.16:0,72,769 0/0:16,0:16:42.12:0,42,490 0/0:26,0:26:75.20:0,75,848 17 80899281 . G A 6899.29 . AC=38;AF=0.452;AN=84;BaseQRankSum=5.002;DP=497;Dels=0.00;FS=2.885;HRun=0;HaplotypeScore=0.3691;InbreedingCoeff=-0.0653;MQ=59.21;MQ0=0;MQRankSum=-0.148;QD=19.33;ReadPosRankSum=0.148 GT:AD:DP:GQ:PL 1/1:0,6:6:18.05:222,18,0 1/1:0,4:4:12.03:133,12,0 1/1:0,15:15:36.11:461,36,0 0/0:14,0:14:39.11:0,39,444 0/1:5,9:14:99:261,0,152 0/1:4,6:10:80.95:205,0,81 0/0:10,0:10:27.08:0,27,336 1/1:0,9:9:27.09:340,27,0 0/1:6,10:17:99:280,0,155 0/1:3,4:7:87.96:123,0,88 0/0:12,0:12:30.08:0,30,356 1/1:0,5:5:15.05:180,15,0 0/1:3,3:6:52.95:71,0,53 1/1:0,7:7:21.07:259,21,0 0/1:20,20:40:99:519,0,501 0/0:14,0:14:36.10:0,36,432 0/1:5,9:14:99:287,0,127 0/1:7,3:10:72.02:72,0,195 1/1:0,17:17:39.11:493,39,0 0/1:14,14:28:99:385,0,312 0/1:4,12:17:94.89:336,0,95 0/0:11,0:12:24.05:0,24,295 0/0:25,0:25:60.19:0,60,788 0/0:7,0:7:18.03:0,18,210 0/1:5,10:15:90.39:298,0,90 0/1:2,3:5:13.66:101,0,14 0/0:7,0:7:18.04:0,18,205 0/1:4,4:8:97.66:98,0,117 0/1:2,8:10:43.21:229,0,43 0/1:10,4:14:99:116,0,213 1/1:0,10:10:24.07:287,24,0 0/1:9,4:13:99:114,0,281 0/1:7,9:16:99:288,0,153 0/0:5,0:5:15.04:0,15,170 0/0:5,0:5:15.04:0,15,177 0/1:4,9:13:99:266,0,103 0/0:19,0:19:48.12:0,48,565 0/0:10,0:10:27.06:0,27,300 0/1:6,3:9:88.35:88,0,165 0/1:3,5:8:76.32:161,0,76 0/1:2,3:5:61.33:95,0,61 0/1:1,4:5:21.93:134,0,22 17 81006629 . C T 34937.51 . AC=24;AF=0.286;AN=84;BaseQRankSum=14.768;DP=3948;DS;Dels=0.00;FS=7.686;HRun=0;HaplotypeScore=1.4737;InbreedingCoeff=-0.1667;MQ=59.25;MQ0=0;MQRankSum=0.986;QD=16.05;ReadPosRankSum=2.768 GT:AD:DP:GQ:PL 0/1:47,38:87:99:1094,0,1186 0/1:44,45:89:99:1285,0,1177 0/1:30,45:75:99:1293,0,755 0/1:77,41:118:99:1102,0,2110 0/0:101,0:101:99:0,289,3628 1/1:2,116:118:99:3977,277,0 0/1:43,45:88:99:1347,0,1331 0/1:40,38:78:99:1139,0,1246 0/0:72,0:72:99:0,199,2283 0/0:79,0:79:99:0,220,2512 0/0:82,0:82:99:0,229,2644 0/0:92,0:92:99:0,259,2949 0/1:33,43:76:99:1201,0,829 0/0:87,0:87:99:0,235,2776 0/1:141,109:250:99:2964,0,3501 0/1:28,46:74:99:1416,0,695 0/1:45,45:90:99:1347,0,1198 0/1:44,49:93:99:1395,0,1112 0/0:118,0:118:99:0,313,3633 0/0:121,0:121:99:0,331,3923 0/1:77,65:143:99:1748,0,1955 0/0:84,0:84:99:0,226,2671 1/1:1,131:132:99:4434,355,0 0/0:80,0:81:99:0,223,2846 0/0:99,0:99:99:0,262,3364 0/0:85,0:85:99:0,241,3003 0/1:30,38:68:99:1088,0,809 0/0:90,0:90:99:0,253,2901 0/1:35,35:70:99:1015,0,934 0/0:80,1:81:99:0,189,2474 0/1:25,38:63:99:1174,0,647 0/1:53,45:98:99:1258,0,1331 0/0:81,0:81:99:0,223,2573 0/0:89,0:89:99:0,244,2852 0/1:37,42:79:99:1236,0,997 0/0:87,0:87:99:0,241,2779 0/1:76,47:123:99:1253,0,1984 0/0:84,0:84:99:0,235,2602 0/1:41,37:78:99:1034,0,1146 0/0:86,0:86:99:0,241,2752 0/1:45,42:87:99:1134,0,1194 0/0:72,0:72:99:0,199,2330 17 81009622 . C T 25.81 . AC=3;AF=0.068;AN=44;BaseQRankSum=-0.604;DP=56;Dels=0.00;FS=2.603;HRun=1;HaplotypeScore=0.0788;InbreedingCoeff=-0.1874;MQ=57.22;MQ0=0;MQRankSum=-0.604;QD=3.69;ReadPosRankSum=1.171 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,77 ./. ./. 0/0:2,0:2:6.02:0,6,70 ./. ./. ./. ./. 0/0:3,0:3:9.03:0,9,111 ./. ./. 0/0:2,0:2:6.02:0,6,73 0/0:2,0:2:6.02:0,6,77 0/0:3,0:3:9.03:0,9,119 0/1:2,1:3:24.41:24,0,63 0/0:3,0:3:3.01:0,3,38 0/1:1,1:2:31.78:32,0,33 ./. ./. 0/1:1,1:2:32.56:33,0,37 0/0:5,0:5:15.04:0,15,180 0/0:2,0:2:6.02:0,6,78 ./. ./. ./. ./. 0/0:2,0:2:6.02:0,6,72 0/0:1,0:1:3.01:0,3,37 ./. 0/0:1,0:1:3.01:0,3,38 ./. 0/0:5,0:5:12.04:0,12,159 0/0:1,0:1:3.01:0,3,36 ./. 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.03:0,9,110 0/0:8,0:8:21.07:0,21,272 ./. ./. ./. 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,40 17 81009636 . T G 124.88 . AC=8;AF=0.167;AN=48;BaseQRankSum=-2.012;DP=56;Dels=0.00;FS=6.340;HRun=0;HaplotypeScore=0.0718;InbreedingCoeff=0.1236;MQ=56.35;MQ0=0;MQRankSum=-0.123;QD=8.92;ReadPosRankSum=-0.014 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,71 ./. ./. 1/1:0,2:2:6.02:69,6,0 ./. ./. ./. ./. 0/0:3,0:3:9.03:0,9,104 ./. ./. 0/0:1,0:1:3.01:0,3,36 0/0:2,0:2:6.02:0,6,71 0/0:3,0:3:6.02:0,6,73 0/1:3,1:4:23.47:23,0,61 0/0:2,0:2:6.01:0,6,65 1/1:0,1:1:3.01:38,3,0 ./. ./. 0/1:2,2:4:26.48:26,0,31 0/0:3,0:3:9.03:0,9,106 0/1:1,1:2:26.48:26,0,32 ./. ./. ./. ./. 0/0:2,0:2:6.02:0,6,66 0/0:1,0:1:3.01:0,3,32 0/1:0,1:1:1.76:33,3,0 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,39 0/0:5,0:5:12.04:0,12,152 0/0:1,0:1:3.01:0,3,35 ./. 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.02:0,6,74 0/0:9,0:9:24.07:0,24,298 ./. ./. ./. 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,35 17 81050953 . G A 344.12 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.609;DP=1169;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8401;InbreedingCoeff=-0.0121;MQ=58.81;MQ0=0;MQRankSum=0.788;QD=13.24;ReadPosRankSum=2.002 GT:AD:DP:GQ:PL 0/0:26,0:26:66.15:0,66,730 0/0:18,0:18:48.12:0,48,536 0/0:18,0:18:54.12:0,54,593 0/0:53,0:53:99:0,132,1637 0/0:37,0:37:93.28:0,93,1158 0/0:50,0:50:99:0,129,1616 0/0:42,0:42:99:0,111,1332 0/0:33,0:33:93.23:0,93,1087 0/0:23,0:23:63.13:0,63,696 0/0:31,0:31:81.21:0,81,930 0/0:12,0:12:33.09:0,33,376 0/0:22,0:22:57.16:0,57,657 0/0:24,0:24:69.13:0,69,715 0/0:19,0:19:57.12:0,57,609 0/0:61,0:61:99:0,168,1910 0/0:21,0:21:60.15:0,60,671 0/0:19,0:19:48.13:0,48,567 0/0:17,0:17:42.08:0,42,466 0/0:34,0:34:87.23:0,87,988 0/0:44,0:44:99:0,99,1195 0/0:30,0:30:81.21:0,81,913 0/0:16,0:16:42.11:0,42,468 0/0:63,1:64:99:0,132,2002 0/0:45,0:45:99:0,102,1260 0/0:18,0:18:45.14:0,45,576 0/0:39,1:40:65.71:0,66,1169 0/0:21,0:21:57.12:0,57,638 0/0:21,0:21:54.15:0,54,624 0/0:18,0:18:51.13:0,51,577 0/0:22,0:22:57.15:0,57,648 0/0:17,0:17:45.11:0,45,499 0/0:33,0:33:84.22:0,84,959 0/1:12,14:26:99:390,0,298 0/0:16,0:16:42.12:0,42,469 0/0:17,0:17:45.12:0,45,496 0/0:14,0:14:36.09:0,36,401 0/0:40,0:40:99:0,111,1222 0/0:27,0:27:75.18:0,75,829 0/0:21,0:21:60.16:0,60,679 0/0:20,0:20:60.12:0,60,629 0/0:16,0:16:45.12:0,45,500 0/0:23,0:23:66.18:0,66,747 18 357443 . C G 2436.49 . 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A G 63483.41 . 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G A 5851.02 . 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C T 70.06 . 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A G 282.56 . 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C T 13099.74 . AC=22;AF=0.262;AN=84;BaseQRankSum=-22.415;DP=2390;Dels=0.00;FS=4.055;HRun=0;HaplotypeScore=1.5639;InbreedingCoeff=0.0147;MQ=59.01;MQ0=0;MQRankSum=-1.072;QD=15.56;ReadPosRankSum=-1.151 GT:AD:DP:GQ:PL 0/1:17,17:34:99:473,0,410 0/1:27,27:55:99:747,0,731 0/0:43,1:44:99:0,120,1466 0/0:122,0:122:99:0,325,4348 0/0:111,0:111:99:0,298,4061 0/0:81,1:83:99:0,187,2965 0/0:73,0:73:99:0,199,2735 0/1:45,38:83:99:1057,0,1438 0/0:48,1:49:85.09:0,85,1414 0/0:56,0:57:99:0,144,1831 0/0:42,0:42:99:0,117,1433 0/1:18,25:43:99:665,0,536 1/1:0,25:26:69.19:803,69,0 0/0:44,0:44:99:0,117,1451 0/0:152,0:152:99:0,394,4977 0/1:15,19:34:99:460,0,471 0/0:47,0:47:99:0,126,1575 0/1:17,21:38:99:547,0,497 0/1:17,25:42:99:715,0,506 0/1:26,31:57:99:828,0,765 0/0:47,2:50:75.75:0,76,1437 0/1:22,18:40:99:513,0,639 0/0:124,0:124:99:0,343,4702 0/0:71,0:71:99:0,202,2705 0/1:37,33:71:99:867,0,1145 0/0:87,0:87:99:0,232,3130 0/1:20,16:36:99:439,0,537 0/1:28,16:44:99:377,0,828 0/1:18,17:35:99:410,0,416 1/1:0,39:39:99:1220,105,0 1/1:0,36:36:96.28:1134,96,0 0/1:31,23:54:99:611,0,830 0/1:9,20:29:99:579,0,257 0/0:44,0:45:99:0,117,1461 0/1:21,25:46:99:655,0,654 0/0:50,1:51:96.25:0,96,1596 0/0:52,0:52:99:0,123,1591 0/0:44,0:44:99:0,123,1540 0/0:57,0:57:99:0,156,1913 0/0:45,0:45:99:0,114,1447 0/0:44,0:44:99:0,117,1479 0/0:54,0:54:99:0,147,1835 18 2925359 . C T 5800.56 . AC=4;AF=0.048;AN=84;BaseQRankSum=9.457;DP=3122;Dels=0.00;FS=1.509;HRun=1;HaplotypeScore=1.9540;InbreedingCoeff=-0.0500;MQ=59.43;MQ0=0;MQRankSum=-0.055;QD=11.49;ReadPosRankSum=3.699 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,153,1758 0/0:46,0:46:99:0,126,1437 0/0:34,0:34:96.22:0,96,1046 0/1:93,62:155:99:1629,0,2586 0/1:80,56:136:99:1550,0,2244 0/1:61,43:104:99:1264,0,1667 0/1:59,51:110:99:1358,0,1647 0/0:119,0:119:99:0,307,3910 0/0:48,0:48:99:0,126,1481 0/0:40,0:40:99:0,111,1285 0/0:52,0:52:99:0,144,1684 0/0:57,0:57:99:0,153,1761 0/0:40,0:40:99:0,105,1211 0/0:56,0:56:99:0,162,1847 0/0:169,0:169:99:0,418,5048 0/0:46,0:46:99:0,120,1361 0/0:52,0:52:99:0,138,1587 0/0:36,0:36:93.25:0,93,1078 0/0:94,0:94:99:0,247,2879 0/0:140,0:140:99:0,358,4168 0/0:100,0:101:99:0,241,2894 0/0:53,0:53:99:0,138,1569 0/0:148,0:149:99:0,397,4973 0/0:78,1:79:99:0,164,2416 0/0:144,0:144:99:0,358,4549 0/0:107,0:107:99:0,253,3198 0/0:35,0:35:99:0,105,1154 0/0:56,0:56:99:0,156,1768 0/0:55,0:55:99:0,147,1693 0/0:35,0:35:99:0,102,1148 0/0:39,0:39:99:0,108,1257 0/0:104,0:104:99:0,271,3198 0/0:63,0:64:99:0,177,1994 0/0:54,0:54:99:0,147,1677 0/0:45,0:45:99:0,117,1376 0/0:61,0:61:99:0,159,1870 0/0:89,0:89:99:0,235,2709 0/0:47,0:47:99:0,126,1437 0/0:50,0:50:99:0,135,1551 0/0:43,0:43:99:0,111,1323 0/0:59,0:59:99:0,165,1887 0/0:62,0:62:99:0,162,1866 18 3129297 . C CG 26.02 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.284;DP=3182;FS=84.236;HRun=4;HaplotypeScore=205.6087;InbreedingCoeff=-0.0426;MQ=58.03;MQ0=0;MQRankSum=-1.602;QD=0.10;ReadPosRankSum=-5.203 GT:AD:DP:GQ:PL 0/0:61,0:61:41.97:0,42,447 0/0:57,0:57:29.12:0,29,527 0/0:42,0:42:26.53:0,27,281 0/0:142,0:142:47.22:0,47,964 0/1:130,0:130:38.21:38,0,827 0/0:134,0:134:27.19:0,27,1121 0/0:117,0:117:87.78:0,88,1301 0/0:106,0:106:71.60:0,72,1072 0/0:55,0:55:45.02:0,45,483 0/0:53,0:53:34.70:0,35,390 0/0:38,1:39:40.52:0,41,442 0/0:52,0:52:44.45:0,44,732 0/0:39,0:39:10.11:0,10,415 0/0:57,0:57:29.18:0,29,583 0/0:151,0:151:41.62:0,42,1287 0/0:55,0:55:39.05:0,39,413 0/0:51,2:53:42.95:0,43,450 0/0:44,0:44:37.05:0,37,426 0/0:78,0:78:3.95:0,4,618 0/0:114,0:114:99:0,113,1678 0/0:88,1:89:20.47:0,20,923 0/0:81,0:81:95.89:0,96,1032 0/0:171,0:171:95.37:0,95,1585 0/1:94,0:94:44.37:44,0,687 0/0:141,0:140:99:0,132,1346 0/0:107,0:107:88.69:0,89,1179 0/0:47,0:47:38.20:0,38,342 0/0:52,0:52:31.15:0,31,539 0/0:49,0:49:17.67:0,18,374 0/1:45,0:45:27.64:28,0,235 0/0:50,0:50:47.97:0,48,513 0/0:98,0:98:99:0,112,1182 0/0:67,0:67:80.33:0,80,857 0/0:63,0:63:26.94:0,27,450 0/0:52,0:52:32.40:0,32,306 0/0:58,0:58:29.58:0,30,557 0/0:68,0:68:37.50:0,37,621 0/0:35,0:35:24.02:0,24,251 0/0:66,1:67:57.89:0,58,604 0/0:60,0:60:27.14:0,27,482 0/0:51,0:51:19.60:0,20,340 0/0:58,0:58:62.76:0,63,640 18 3129302 . T G 290.20 . AC=12;AF=0.143;AN=84;BaseQRankSum=-19.016;DP=2625;Dels=0.00;FS=129.371;HRun=4;HaplotypeScore=1.5676;InbreedingCoeff=-0.2010;MQ=58.63;MQ0=0;MQRankSum=0.126;QD=0.39;ReadPosRankSum=2.867 GT:AD:DP:GQ:PL 0/0:23,23:46:63.17:0,63,705 0/1:17,26:43:6.19:6,0,431 0/0:15,17:32:45.09:0,45,487 0/0:43,93:137:45.36:0,45,1203 0/1:34,82:117:82.38:82,0,803 0/1:35,79:114:46.74:47,0,948 0/0:40,73:114:36.46:0,36,1128 0/1:34,59:93:29.06:29,0,814 0/0:28,21:49:81.18:0,81,887 0/0:14,22:36:19.42:0,19,420 0/0:9,18:27:1.30:5,0,212 0/0:20,24:44:4.16:0,4,554 0/1:16,12:29:12.17:12,0,372 0/1:19,25:44:25.53:26,0,487 0/0:58,64:124:53.51:0,54,1634 0/0:14,24:39:36.11:0,36,422 0/0:13,21:35:12.36:0,12,331 0/0:15,19:34:45.10:0,45,497 0/1:27,31:59:30.63:31,0,715 0/0:46,51:98:39.53:0,40,1200 0/0:38,29:67:12.53:0,13,979 0/0:36,36:72:90.24:0,90,1021 0/0:47,109:156:11.11:0,11,1305 0/1:33,49:82:83.39:83,0,802 0/0:37,81:120:99:0,111,1212 0/0:41,59:100:38.16:0,38,1017 0/0:9,31:41:24.07:0,24,274 0/1:12,24:36:22.12:22,0,311 0/1:6,23:29:16.52:17,0,116 0/1:10,23:33:53.67:54,0,269 0/0:13,23:36:36.07:0,36,403 0/0:34,42:77:8.10:0,8,724 0/0:20,40:60:57.08:0,57,595 0/0:16,31:47:20.42:0,20,417 0/0:9,30:40:5.35:0,5,234 0/1:23,33:56:16.66:17,0,615 0/0:29,24:54:25.25:0,25,900 0/0:11,15:27:27.04:0,27,288 0/0:16,29:46:17.40:0,17,400 0/0:20,20:41:6.82:0,7,529 0/0:14,26:40:2.33:1,0,271 0/0:24,27:51:36.89:0,37,715 18 3129368 . T C 4031.54 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.063;DP=7273;DS;Dels=0.00;FS=3.938;HRun=1;HaplotypeScore=4.1461;InbreedingCoeff=-0.0244;MQ=59.11;MQ0=0;MQRankSum=0.614;QD=12.14;ReadPosRankSum=-0.537 GT:AD:DP:GQ:PL 0/0:150,0:150:99:0,406,5079 0/0:134,0:134:99:0,352,4473 0/0:120,0:120:99:0,322,4051 0/0:250,0:250:99:0,674,8687 0/0:249,0:250:99:0,677,8747 0/0:250,0:250:99:0,668,8836 0/0:250,0:250:99:0,635,8357 0/0:250,0:250:99:0,608,7986 0/0:131,0:131:99:0,334,4250 0/0:123,0:123:99:0,313,3899 0/0:139,0:139:99:0,364,4584 0/0:123,0:123:99:0,337,4237 0/0:96,0:96:99:0,250,3177 0/0:120,0:120:99:0,346,4287 0/0:249,0:250:99:0,638,8053 0/0:111,0:111:99:0,301,3751 0/0:126,0:126:99:0,343,4250 0/0:141,0:141:99:0,376,4691 0/0:230,0:230:99:0,590,7457 0/0:250,0:250:99:0,617,7862 0/0:249,0:250:99:0,617,7922 0/0:183,0:184:99:0,481,6062 0/0:250,0:250:99:0,671,8652 0/0:250,0:250:99:0,638,8415 0/0:250,0:250:99:0,629,8192 0/0:250,0:250:99:0,641,8455 0/0:101,0:101:99:0,280,3471 0/0:129,0:129:99:0,349,4354 0/0:122,0:122:99:0,322,4071 0/0:138,0:138:99:0,340,4321 0/0:104,0:104:99:0,289,3625 0/0:237,0:238:99:0,626,7995 0/0:181,0:181:99:0,469,5900 0/0:148,0:149:99:0,394,4965 0/0:137,0:137:99:0,364,4605 0/0:146,0:146:99:0,391,4943 0/1:106,107:214:99:2818,0,2981 0/1:71,47:118:99:1214,0,1945 0/0:160,0:160:99:0,433,5414 0/0:130,0:130:99:0,358,4471 0/0:116,0:116:99:0,313,3947 0/0:162,0:162:99:0,439,5535 18 3173964 . G A 16674.42 . AC=28;AF=0.333;AN=84;BaseQRankSum=11.272;DP=2457;Dels=0.00;FS=0.750;HRun=0;HaplotypeScore=1.0952;InbreedingCoeff=0.0357;MQ=59.34;MQ0=0;MQRankSum=1.965;QD=14.60;ReadPosRankSum=-0.869 GT:AD:DP:GQ:PL 0/1:24,20:44:99:531,0,609 0/1:24,15:39:99:390,0,602 0/1:31,17:48:99:420,0,813 0/0:173,0:173:99:0,403,5177 0/1:60,45:105:99:1027,0,1692 0/0:82,0:82:99:0,211,2634 0/0:73,0:73:99:0,199,2444 0/1:51,50:101:99:1243,0,1359 0/1:17,25:42:99:703,0,409 0/0:25,0:25:57.14:0,57,645 1/1:0,31:31:75.22:918,75,0 0/1:29,22:51:99:632,0,790 0/1:20,19:40:99:519,0,491 0/1:22,14:36:99:378,0,578 0/0:132,0:132:99:0,334,3791 0/0:43,0:43:99:0,111,1255 0/0:52,0:52:99:0,141,1587 1/1:0,29:29:72.22:895,72,0 0/1:46,30:76:99:615,0,1109 0/0:87,0:87:99:0,238,2700 0/0:67,0:67:99:0,162,1900 0/0:50,0:50:99:0,129,1490 0/1:62,55:118:99:1459,0,1687 0/0:86,0:86:99:0,211,2619 0/0:86,0:86:99:0,217,2725 0/0:78,0:78:99:0,190,2355 0/1:16,11:27:99:280,0,457 0/1:15,20:36:99:587,0,364 0/0:35,0:35:87.24:0,87,1003 0/0:35,0:35:93.22:0,93,1017 0/1:17,16:33:99:399,0,465 0/1:36,30:66:99:773,0,930 0/0:50,1:51:98.36:0,98,1449 1/1:0,34:34:93.29:1147,93,0 1/1:1,30:31:43.65:860,44,0 0/1:20,24:45:99:668,0,474 0/0:74,0:74:99:0,165,1900 0/0:38,0:38:96.23:0,96,1107 0/0:48,0:48:99:0,132,1466 1/1:0,29:29:81.24:983,81,0 0/1:14,20:34:99:523,0,352 0/1:23,24:47:99:723,0,570 18 3729136 . C T 64.46 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.604;DP=748;Dels=0.00;FS=2.040;HRun=0;HaplotypeScore=0.5521;InbreedingCoeff=-0.0130;MQ=58.59;MQ0=0;MQRankSum=0.284;QD=5.37;ReadPosRankSum=-0.820 GT:AD:DP:GQ:PL 0/0:9,0:9:24.07:0,24,296 0/0:10,0:10:30.08:0,30,332 0/0:6,0:6:15.04:0,15,177 0/0:44,0:44:99:0,114,1431 0/0:49,0:49:99:0,132,1620 0/0:28,0:28:66.19:0,66,838 0/0:21,0:21:54.16:0,54,664 0/0:13,0:14:39.10:0,39,459 0/0:19,0:19:54.14:0,54,629 0/0:7,0:7:18.05:0,18,214 0/0:12,0:12:36.10:0,36,418 0/0:18,0:18:48.14:0,48,570 0/0:12,0:12:27.08:0,27,318 0/0:19,0:20:54.15:0,54,643 0/0:40,0:40:99:0,99,1164 0/0:17,0:17:48.13:0,48,553 0/1:8,4:12:99:111,0,204 0/0:13,0:13:39.09:0,39,418 0/0:18,0:18:48.12:0,48,536 0/0:19,0:19:45.12:0,45,527 0/0:22,0:22:57.16:0,57,664 0/0:19,0:19:54.15:0,54,633 0/0:38,0:38:93.28:0,93,1184 0/0:10,0:10:27.09:0,27,348 0/0:19,0:19:51.16:0,51,641 0/0:14,0:14:30.08:0,30,373 0/0:18,0:18:48.12:0,48,533 0/0:18,0:18:51.14:0,51,604 0/0:6,0:6:18.04:0,18,205 0/0:11,0:11:30.09:0,30,358 0/0:15,0:15:45.11:0,45,503 0/0:25,0:25:69.21:0,69,839 0/0:14,0:14:42.12:0,42,498 0/0:14,0:14:39.11:0,39,468 0/0:11,0:11:24.06:0,24,276 0/0:15,0:15:42.11:0,42,480 0/0:18,0:18:51.14:0,51,588 0/0:13,0:13:33.08:0,33,370 0/0:22,0:22:57.16:0,57,656 0/0:16,0:16:48.13:0,48,546 0/0:12,0:12:33.09:0,33,378 0/0:10,0:10:27.06:0,27,309 18 3729159 . CGGT C 179.27 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.984;DP=861;FS=0.000;HRun=0;HaplotypeScore=81.9496;InbreedingCoeff=-0.0135;MQ=58.16;MQ0=0;MQRankSum=-0.566;QD=9.44;ReadPosRankSum=1.470 GT:AD:DP:GQ:PL 0/0:13,0:13:24.08:0,24,509 0/0:16,0:16:36.12:0,36,762 0/0:9,0:9:18.06:0,18,378 0/0:41,0:41:96.32:0,96,1980 0/0:42,0:42:99:0,111,2280 0/0:25,0:24:45.14:0,45,911 0/0:26,0:26:63.22:0,63,1322 0/0:18,0:17:42.14:0,42,829 0/0:24,0:24:54.65:0,55,1103 0/0:14,0:14:33.11:0,33,700 0/0:12,0:12:21.07:0,21,445 0/0:17,0:17:30.10:0,30,637 0/0:16,0:16:30.10:0,30,620 0/0:18,0:18:36.12:0,36,763 0/0:49,0:49:96.33:0,96,2005 0/0:20,0:20:51.17:0,51,1042 0/0:12,0:12:24.07:0,24,450 0/0:12,0:12:21.07:0,21,443 0/0:24,0:24:42.14:0,42,887 0/0:19,0:19:36.12:0,36,762 0/0:30,0:30:49.41:0,49,1022 0/0:25,0:25:63.22:0,63,1327 0/0:33,0:33:87.30:0,87,1843 0/0:14,0:14:27.09:0,27,572 0/0:23,0:23:48.16:0,48,980 0/0:18,0:15:42.14:0,42,868 0/0:20,0:20:33.10:0,33,659 0/0:18,0:18:33.11:0,33,679 0/0:16,0:16:24.08:0,24,473 0/0:13,0:13:33.11:0,33,668 0/0:15,0:15:30.10:0,30,632 0/0:35,0:35:63.22:0,63,1303 0/0:21,0:21:54.19:0,54,1146 0/0:18,0:18:30.10:0,30,625 0/0:11,0:11:21.07:0,21,442 0/0:19,0:19:48.16:0,48,960 0/0:24,0:24:54.19:0,54,1126 0/0:18,0:18:45.15:0,45,953 0/1:13,6:19:99:235,0,388 0/0:21,0:21:51.17:0,51,1048 0/0:15,0:15:27.09:0,27,569 0/0:8,0:8:12.04:0,12,246 18 3729175 . C T 3667.82 . AC=16;AF=0.190;AN=84;BaseQRankSum=5.253;DP=733;Dels=0.00;FS=1.269;HRun=0;HaplotypeScore=0.7093;InbreedingCoeff=-0.0813;MQ=58.33;MQ0=0;MQRankSum=1.379;QD=14.73;ReadPosRankSum=-2.286 GT:AD:DP:GQ:PL 0/0:13,0:13:30.09:0,30,368 0/0:18,0:18:51.12:0,51,546 0/0:9,0:9:24.05:0,24,258 0/0:34,0:34:93.24:0,93,1070 0/0:35,1:36:66.73:0,67,1164 0/1:5,11:17:99:313,0,124 0/1:17,7:25:99:194,0,477 0/0:14,0:14:36.10:0,36,422 0/0:19,0:19:57.13:0,57,623 0/0:12,0:12:36.07:0,36,384 0/0:12,0:12:30.07:0,30,333 0/0:11,0:11:33.08:0,33,354 0/0:13,0:13:36.09:0,36,394 0/0:16,0:16:45.10:0,45,491 0/0:43,0:43:84.19:0,84,941 0/0:18,0:18:54.13:0,54,581 0/0:9,0:9:24.06:0,24,255 0/0:10,0:10:27.03:0,27,273 0/1:9,9:18:99:222,0,215 0/1:7,10:17:99:252,0,178 0/1:13,11:24:99:259,0,362 0/1:13,12:25:99:265,0,297 0/0:29,0:29:81.24:0,81,967 0/0:16,0:16:36.11:0,36,434 0/0:18,0:19:45.13:0,45,529 0/0:19,0:19:51.13:0,51,576 0/0:14,0:14:39.10:0,39,432 0/0:11,0:11:27.07:0,27,292 0/0:12,0:12:27.03:0,27,268 0/1:4,8:12:93.42:236,0,93 0/0:14,0:15:36.07:0,36,376 0/0:31,0:31:75.13:0,75,804 0/1:12,9:21:99:227,0,331 0/1:8,5:13:99:99,0,199 0/1:3,4:7:66.56:67,0,85 0/0:15,0:15:36.07:0,36,393 0/1:5,12:17:84.35:380,0,84 0/0:16,0:16:48.11:0,48,525 0/1:6,9:15:99:240,0,133 1/1:0,17:18:51.14:587,51,0 0/1:4,7:11:99:208,0,100 0/1:3,5:9:55.88:117,0,56 18 5406848 . A C 1731.04 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.516;DP=3712;Dels=0.00;FS=0.538;HRun=0;HaplotypeScore=4.0780;InbreedingCoeff=-0.0244;MQ=59.56;MQ0=0;MQRankSum=1.572;QD=13.85;ReadPosRankSum=-3.084 GT:AD:DP:GQ:PL 0/1:31,33:64:99:993,0,875 0/1:33,28:61:99:801,0,935 0/0:52,0:52:99:0,153,1866 0/0:184,0:185:99:0,533,6582 0/0:185,0:185:99:0,530,6653 0/0:178,0:178:99:0,500,6409 0/0:161,0:161:99:0,463,5862 0/0:140,0:141:99:0,406,5076 0/0:56,0:56:99:0,165,1996 0/0:53,0:53:99:0,147,1793 0/0:44,0:44:99:0,129,1575 0/0:67,0:67:99:0,199,2385 0/0:45,0:45:99:0,132,1595 0/0:58,0:58:99:0,172,2074 0/0:180,0:180:99:0,478,5890 0/0:60,0:60:99:0,175,2094 0/0:61,0:61:99:0,178,2139 0/0:65,0:65:99:0,193,2302 0/0:97,0:97:99:0,271,3315 0/0:104,0:104:99:0,301,3672 0/0:83,0:83:99:0,232,2843 0/0:57,0:57:99:0,166,2010 0/0:198,0:198:99:0,566,7038 0/0:152,0:152:99:0,424,5374 0/0:141,0:141:99:0,394,4939 0/0:125,0:125:99:0,352,4386 0/0:44,0:44:99:0,129,1545 0/0:62,0:62:99:0,165,1999 0/0:53,0:53:99:0,141,1711 0/0:58,0:58:99:0,172,2099 0/0:59,0:59:99:0,172,2103 0/0:95,0:95:99:0,253,3195 0/0:72,0:72:99:0,202,2459 0/0:59,0:59:99:0,166,2027 0/0:76,0:76:99:0,220,2629 0/0:53,0:53:99:0,144,1767 0/0:84,0:84:99:0,232,2879 0/0:63,0:63:99:0,181,2176 0/0:56,0:56:99:0,165,2000 0/0:68,1:69:99:0,190,2312 0/0:66,0:66:99:0,193,2301 0/0:68,0:68:99:0,193,2346 18 5478295 . C A 1994.29 . AC=2;AF=0.024;AN=84;BaseQRankSum=-12.114;DP=4135;DS;Dels=0.00;FS=1.382;HRun=0;HaplotypeScore=0.8948;InbreedingCoeff=-0.0244;MQ=59.54;MQ0=0;MQRankSum=-0.673;QD=12.39;ReadPosRankSum=-0.529 GT:AD:DP:GQ:PL 0/0:82,0:82:99:0,208,2698 0/0:89,0:89:99:0,247,3143 0/0:69,0:69:99:0,193,2472 0/0:177,0:177:99:0,445,6138 0/0:141,0:141:99:0,379,5235 0/0:149,0:149:99:0,394,5451 0/0:126,0:126:99:0,331,4570 0/0:140,0:140:99:0,352,4858 0/0:67,0:67:99:0,181,2345 0/0:82,0:82:99:0,217,2825 0/0:66,0:66:99:0,190,2413 0/0:79,0:79:99:0,220,2833 0/0:78,0:78:99:0,214,2770 0/0:71,0:71:99:0,196,2515 0/0:245,1:246:99:0,626,8218 0/0:64,0:64:99:0,178,2265 0/0:103,0:103:99:0,277,3552 0/0:87,0:87:99:0,241,3107 0/0:120,0:120:99:0,316,4060 0/0:108,0:108:99:0,277,3631 0/0:111,0:111:99:0,286,3693 0/0:64,0:64:99:0,175,2256 0/0:161,0:161:99:0,418,5807 0/0:134,0:134:99:0,373,5085 0/0:155,0:155:99:0,391,5414 0/0:108,0:108:99:0,289,3993 0/1:36,34:70:99:923,0,1119 0/1:51,40:91:99:1134,0,1525 0/0:80,0:80:99:0,220,2795 0/0:74,0:74:99:0,205,2610 0/0:68,0:68:99:0,181,2336 0/0:95,1:96:99:0,210,3175 0/0:69,0:69:99:0,187,2421 0/0:81,0:81:99:0,226,2906 0/0:71,0:71:99:0,199,2545 0/0:103,0:103:99:0,274,3517 0/0:102,1:103:99:0,274,3501 0/0:72,0:72:99:0,208,2633 0/0:83,0:83:99:0,223,2871 0/0:62,0:62:99:0,163,2114 0/0:63,0:63:99:0,172,2171 0/0:72,0:72:99:0,193,2514 18 6959394 . G A 2947.36 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.184;DP=4255;DS;Dels=0.00;FS=0.359;HRun=0;HaplotypeScore=2.5114;InbreedingCoeff=-0.0244;MQ=59.39;MQ0=0;MQRankSum=-0.795;QD=13.46;ReadPosRankSum=-0.110 GT:AD:DP:GQ:PL 0/0:80,0:80:99:0,232,2722 0/0:87,0:87:99:0,238,2773 0/0:70,0:70:99:0,202,2293 0/0:169,0:169:99:0,463,5971 0/0:163,0:163:99:0,454,5872 0/0:122,0:122:99:0,322,4232 0/0:100,0:100:99:0,265,3407 0/0:137,0:137:99:0,364,4699 0/0:89,0:89:99:0,244,2846 0/0:83,0:83:99:0,226,2646 0/0:81,0:81:99:0,229,2739 0/0:69,0:69:99:0,187,2174 0/0:70,0:70:99:0,184,2223 0/0:78,0:78:99:0,214,2480 0/0:214,1:215:99:0,551,6778 0/0:86,0:87:99:0,250,2871 0/0:81,0:81:99:0,226,2651 0/0:79,0:79:99:0,220,2583 0/0:129,0:130:99:0,325,3891 0/0:134,1:135:99:0,358,4287 0/0:135,0:135:99:0,367,4358 0/0:101,0:102:99:0,280,3261 0/0:168,1:169:99:0,399,5652 0/0:86,0:86:99:0,241,3088 0/0:112,0:112:99:0,295,3790 0/0:91,0:91:99:0,238,3055 0/0:58,0:58:99:0,171,2005 0/0:89,0:89:99:0,250,2928 0/0:86,0:86:99:0,229,2770 0/0:74,1:75:99:0,217,2551 0/0:82,0:82:99:0,238,2757 0/0:145,0:145:99:0,376,4497 0/0:116,0:116:99:0,316,3699 0/0:90,0:90:99:0,253,2972 0/0:65,0:65:99:0,178,2126 0/0:93,0:93:99:0,262,3083 0/1:68,68:136:99:1792,0,1786 0/0:103,0:103:99:0,286,3227 0/1:38,45:83:99:1217,0,1014 0/0:75,0:75:99:0,211,2495 0/0:59,0:59:99:0,165,1935 0/0:80,0:80:99:0,229,2678 18 6999963 . G A 4982.64 . AC=7;AF=0.083;AN=84;BaseQRankSum=-2.860;DP=2562;Dels=0.00;FS=5.224;HRun=0;HaplotypeScore=1.6453;InbreedingCoeff=0.2208;MQ=59.36;MQ0=0;MQRankSum=-0.942;QD=16.55;ReadPosRankSum=-1.256 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,150,1823 0/1:33,27:60:99:761,0,788 1/1:0,40:40:99:1346,114,0 0/0:86,0:87:99:0,223,2832 0/0:71,0:71:99:0,193,2514 0/0:69,0:69:99:0,172,2232 0/0:71,0:71:99:0,181,2368 0/0:82,0:82:99:0,214,2773 0/0:35,0:35:93.28:0,93,1134 0/0:46,0:46:99:0,129,1550 0/0:47,0:47:99:0,129,1565 0/0:56,0:56:99:0,135,1670 0/0:38,0:38:99:0,99,1195 0/0:53,0:54:99:0,147,1763 0/0:173,0:174:99:0,424,5117 0/0:34,0:34:90.27:0,90,1087 0/0:59,0:59:99:0,174,2025 0/0:65,0:65:99:0,150,1819 0/0:81,0:81:99:0,202,2361 0/0:80,0:80:99:0,223,2639 0/0:80,0:80:99:0,205,2459 0/0:58,0:58:99:0,150,1769 0/0:108,0:108:99:0,283,3654 0/0:41,0:41:99:0,117,1507 0/0:61,0:61:99:0,163,2084 0/0:53,0:53:99:0,144,1870 0/0:28,0:28:81.24:0,81,974 0/0:56,0:56:99:0,147,1767 0/0:31,0:31:87.24:0,87,1031 0/0:53,0:53:99:0,144,1732 0/0:35,0:35:99:0,99,1190 0/0:83,0:83:99:0,199,2446 0/0:60,0:60:99:0,159,1892 0/1:20,26:46:99:788,0,439 0/0:58,0:58:99:0,159,1912 0/1:32,26:58:99:733,0,830 0/0:82,0:85:99:0,211,2505 0/0:59,0:59:99:0,165,1948 0/0:50,0:51:99:0,129,1551 0/1:31,18:50:99:506,0,864 0/1:18,29:47:99:848,0,458 0/0:52,0:52:99:0,135,1624 18 7012123 . A G 11664.08 . AC=39;AF=0.464;AN=84;BaseQRankSum=16.037;DP=1080;Dels=0.00;FS=4.722;HRun=2;HaplotypeScore=0.4281;InbreedingCoeff=-0.1009;MQ=59.09;MQ0=0;MQRankSum=0.456;QD=15.39;ReadPosRankSum=0.277 GT:AD:DP:GQ:PL 0/0:20,0:20:54.16:0,54,661 0/1:18,6:24:97.86:98,0,528 1/1:0,17:17:45.14:582,45,0 0/1:23,20:43:99:586,0,614 0/1:21,13:34:99:402,0,559 0/1:25,8:33:99:237,0,700 0/0:33,0:33:81.25:0,81,1043 0/1:25,18:43:99:549,0,695 1/1:0,14:14:36.12:473,36,0 0/1:20,8:28:99:213,0,503 0/1:5,4:9:99:118,0,130 1/1:0,14:14:36.11:467,36,0 0/1:7,7:14:99:191,0,206 1/1:0,12:12:36.11:453,36,0 0/1:41,28:70:99:722,0,1078 0/1:14,6:20:99:169,0,416 0/0:26,0:26:63.20:0,63,800 0/1:12,11:23:99:312,0,344 0/0:41,0:42:99:0,111,1341 0/0:35,0:35:93.29:0,93,1155 1/1:0,29:29:69.21:890,69,0 0/1:8,13:21:99:370,0,235 0/0:49,0:49:99:0,120,1524 0/1:13,11:24:99:336,0,376 0/1:15,13:28:99:391,0,359 0/1:15,9:24:99:259,0,406 0/1:11,6:17:99:179,0,314 0/0:16,0:16:45.14:0,45,551 0/1:8,10:18:99:297,0,208 0/0:26,0:26:75.23:0,75,907 0/1:9,11:20:99:326,0,243 1/1:0,24:24:63.20:816,63,0 0/0:16,0:16:45.13:0,45,534 0/1:11,10:21:99:200,0,330 0/0:25,1:26:46.52:0,47,795 0/1:11,10:21:99:300,0,311 0/1:30,4:34:33.81:34,0,833 0/0:33,0:33:87.26:0,87,1047 0/1:12,10:22:99:273,0,376 1/1:0,18:18:48.14:600,48,0 0/1:15,8:23:99:248,0,372 1/1:0,16:16:45.14:573,45,0 18 7034508 . T G 18020.38 . AC=19;AF=0.226;AN=84;BaseQRankSum=23.223;DP=2884;Dels=0.00;FS=1.431;HRun=1;HaplotypeScore=1.0550;InbreedingCoeff=0.1158;MQ=59.42;MQ0=0;MQRankSum=1.493;QD=17.75;ReadPosRankSum=0.740 GT:AD:DP:GQ:PL 0/1:20,23:43:99:673,0,554 0/1:18,29:47:99:870,0,485 0/1:30,26:56:99:729,0,850 0/1:48,75:123:99:2356,0,1225 0/1:48,37:85:99:1183,0,1429 0/0:76,0:76:99:0,220,2727 0/1:40,48:88:99:1586,0,1085 0/0:89,0:89:99:0,241,2941 0/0:39,0:39:99:0,111,1315 0/1:41,34:75:99:988,0,1075 0/0:55,0:55:99:0,156,1883 0/0:39,1:40:72.76:0,73,1279 0/0:58,0:58:99:0,159,1916 0/0:41,0:41:99:0,117,1411 0/0:177,0:177:99:0,466,5655 0/0:43,0:43:99:0,126,1499 0/0:60,0:60:99:0,169,2019 0/0:57,0:57:99:0,162,1949 0/0:98,0:98:99:0,259,3193 0/0:100,0:100:99:0,256,3154 0/0:96,0:96:99:0,253,3107 0/0:37,0:37:99:0,105,1249 0/0:151,0:151:99:0,403,4965 0/0:109,0:109:99:0,286,3559 0/1:45,47:92:99:1451,0,1266 0/0:83,0:83:99:0,220,2685 1/1:0,30:30:81.25:1042,81,0 0/1:31,26:57:99:821,0,855 0/1:25,16:41:99:485,0,713 1/1:0,53:53:99:1803,144,0 0/1:29,19:48:99:539,0,907 0/1:36,42:78:99:1148,0,924 1/1:0,45:45:99:1528,120,0 0/0:57,0:57:99:0,156,1889 0/0:50,0:50:99:0,135,1659 0/1:25,29:54:99:818,0,702 0/0:77,1:78:99:0,202,2485 0/0:61,0:61:99:0,175,2082 0/0:57,0:57:99:0,165,1949 0/0:44,0:44:99:0,120,1446 0/0:56,0:56:99:0,150,1810 0/0:57,0:57:99:0,162,1971 18 8379296 . C T 1671.04 . AC=4;AF=0.048;AN=84;BaseQRankSum=2.065;DP=2486;Dels=0.00;FS=4.458;HRun=1;HaplotypeScore=1.9764;InbreedingCoeff=-0.0500;MQ=59.14;MQ0=0;MQRankSum=1.802;QD=12.02;ReadPosRankSum=-0.615 GT:AD:DP:GQ:PL 0/0:31,0:32:84.21:0,84,963 0/0:37,0:37:99:0,99,1123 0/0:40,0:40:99:0,108,1253 0/0:133,0:133:99:0,340,4231 0/0:107,0:107:99:0,280,3562 0/0:82,0:82:99:0,196,2481 0/0:59,0:59:99:0,153,1867 0/0:80,0:80:99:0,211,2572 0/0:38,0:38:93.26:0,93,1116 0/0:32,0:32:75.21:0,75,903 0/0:36,0:36:96.26:0,96,1120 0/0:29,0:29:78.17:0,78,862 0/0:38,0:38:90.22:0,90,1056 0/0:36,0:36:87.21:0,87,1023 0/0:158,0:158:99:0,385,4522 0/0:29,0:29:75.20:0,75,859 0/0:32,0:32:90.25:0,90,1037 0/0:44,0:44:99:0,123,1391 0/0:92,0:93:99:0,238,2754 0/0:98,0:99:99:0,253,2973 0/0:105,0:105:99:0,271,3110 0/0:62,0:62:99:0,153,1784 0/0:145,0:145:99:0,346,4382 0/0:55,0:55:99:0,129,1659 0/0:68,0:68:99:0,172,2134 0/0:70,0:70:99:0,184,2231 0/1:20,14:34:99:346,0,498 0/0:36,0:36:99:0,99,1107 0/1:7,14:21:99:422,0,171 0/0:48,0:49:99:0,129,1467 0/0:37,0:37:99:0,102,1185 0/0:93,0:93:99:0,244,2805 0/0:63,0:63:99:0,159,1875 0/1:22,13:35:99:369,0,638 0/0:39,0:39:99:0,105,1203 0/1:26,23:49:99:621,0,707 0/0:87,0:87:99:0,220,2605 0/0:50,0:50:99:0,126,1451 0/0:38,0:38:99:0,102,1166 0/0:32,0:32:78.21:0,78,883 0/0:38,0:38:99:0,105,1159 0/0:46,0:46:99:0,126,1433 18 8609872 . C A 27.11 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.778;DP=536;Dels=0.00;FS=14.492;HRun=0;HaplotypeScore=0.9395;InbreedingCoeff=-0.0769;MQ=58.25;MQ0=0;MQRankSum=0.288;QD=1.04;ReadPosRankSum=0.244 GT:AD:DP:GQ:PL 0/0:14,0:14:27.02:0,27,290 0/0:9,2:11:27.07:0,27,307 0/0:7,0:7:18.03:0,18,204 0/0:31,2:33:40.43:0,40,670 0/0:32,5:37:17.78:0,18,696 0/0:21,1:23:48.08:0,48,554 0/0:17,1:18:21.42:0,21,493 0/0:14,2:16:30.04:0,30,347 0/0:5,0:5:5.99:0,6,66 0/0:7,0:7:15.02:0,15,151 0/0:6,2:8:12.03:0,12,137 0/0:9,1:10:18.05:0,18,217 0/0:7,0:7:18.04:0,18,194 0/0:4,0:4:3.01:0,3,45 0/0:28,3:31:32.49:0,32,642 0/0:11,1:12:0.37:11,0,171 0/0:5,0:5:12.04:0,12,143 0/0:6,0:6:12.02:0,12,130 0/0:8,1:9:12.04:0,12,148 0/1:9,5:14:63.24:63,0,204 0/0:17,1:20:17.37:0,17,391 0/0:11,0:11:21.04:0,21,227 0/0:34,0:34:84.15:0,84,949 0/1:7,4:12:21.34:21,0,163 0/0:18,2:21:0.60:8,0,399 0/0:17,0:17:27.08:0,27,334 0/0:8,0:8:18.05:0,18,222 0/0:14,0:14:30.05:0,30,331 0/0:3,1:4:6.02:0,6,67 0/0:6,1:7:15.03:0,15,166 0/0:6,0:6:12.02:0,12,129 0/0:17,2:19:3.36:0,3,275 0/0:4,2:6:3.01:0,3,32 0/0:4,0:4:6:0,6,59 0/0:12,0:12:24:0,24,250 0/0:6,0:6:12.03:0,12,131 0/0:11,2:14:27.06:0,27,311 0/0:6,0:6:12.02:0,12,131 0/0:7,2:9:18.01:0,18,173 0/0:10,1:11:18.04:0,18,219 0/0:10,0:10:27.04:0,27,293 0/0:8,0:8:21.03:0,21,228 18 9104204 . G GC 12098.70 . 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A T 2933.49 . AC=5;AF=0.060;AN=84;BaseQRankSum=2.655;DP=1842;Dels=0.00;FS=2.903;HRun=1;HaplotypeScore=1.3408;InbreedingCoeff=-0.0633;MQ=49.43;MQ0=73;MQRankSum=3.396;QD=12.92;ReadPosRankSum=0.012 GT:AD:DP:GQ:PL 0/0:34,0:34:87.24:0,87,987 0/0:38,0:38:90.26:0,90,1066 0/0:35,0:35:99:0,102,1206 0/0:60,0:60:99:0,159,1862 0/0:48,0:48:99:0,132,1581 0/0:69,0:69:99:0,184,2204 0/1:28,24:52:99:648,0,672 0/0:62,0:62:99:0,165,1946 0/0:33,0:33:81.24:0,81,954 0/0:32,0:32:87.25:0,87,1017 0/0:49,0:49:99:0,144,1640 0/0:41,0:41:99:0,105,1253 0/0:34,0:34:90.26:0,90,1077 0/0:27,0:27:75.22:0,75,878 0/0:130,0:130:99:0,322,3750 0/0:31,1:32:84.23:0,84,974 0/0:29,0:29:69.20:0,69,809 0/1:25,20:45:99:533,0,632 0/0:52,0:52:99:0,138,1594 0/0:49,0:49:99:0,117,1437 0/0:54,0:54:99:0,138,1606 0/0:25,0:25:66.19:0,66,782 0/0:75,0:75:99:0,193,2318 0/0:42,0:42:99:0,123,1471 0/0:60,0:60:99:0,168,1991 0/0:49,0:49:99:0,132,1535 0/0:32,0:32:75.18:0,75,848 0/0:26,0:26:69.20:0,69,803 0/0:36,0:36:99:0,102,1196 0/0:30,0:30:81.23:0,81,936 0/0:29,0:29:81.20:0,81,927 0/0:52,0:52:99:0,135,1610 0/0:29,0:29:81.23:0,81,941 0/0:35,0:35:93.28:0,93,1104 0/0:40,0:40:99:0,102,1189 0/1:18,26:44:99:682,0,502 0/0:46,1:47:99:0,111,1252 0/0:41,0:41:99:0,105,1225 0/1:27,14:41:99:368,0,793 0/0:20,0:20:51.15:0,51,593 0/0:37,0:37:99:0,105,1202 0/1:17,28:45:99:799,0,435 18 9119499 . C T 501.09 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.479;DP=1925;Dels=0.00;FS=18.720;HRun=1;HaplotypeScore=1.3506;InbreedingCoeff=-0.0120;MQ=46.16;MQ0=102;MQRankSum=1.659;QD=9.11;ReadPosRankSum=0.420 GT:AD:DP:GQ:PL 0/0:36,0:36:81.22:0,81,960 0/0:45,0:45:99:0,105,1276 0/0:31,0:31:90.26:0,90,1084 0/0:73,0:73:99:0,199,2462 0/0:56,0:56:99:0,153,1919 0/0:69,0:69:99:0,178,2226 0/0:53,0:54:99:0,138,1734 0/0:67,0:67:99:0,165,2087 0/0:33,0:33:84.25:0,84,1018 0/0:37,0:37:96.28:0,96,1175 0/0:50,0:51:99:0,147,1767 0/0:42,0:42:99:0,99,1233 0/0:37,0:37:90.28:0,90,1141 0/0:30,0:30:81.25:0,81,994 0/0:136,0:136:99:0,343,4152 0/0:28,0:28:72.22:0,72,870 0/0:29,0:29:69.21:0,69,857 0/0:54,1:55:99:0,141,1706 0/0:52,0:53:99:0,135,1580 0/0:51,0:51:99:0,132,1646 0/0:54,1:55:99:0,141,1668 0/0:30,1:31:75.21:0,75,920 0/0:75,0:75:99:0,199,2544 0/0:47,0:47:99:0,132,1655 0/0:59,0:59:99:0,168,2128 0/1:34,21:55:99:547,0,908 0/0:28,0:28:72.20:0,72,862 0/0:29,0:29:81.25:0,81,979 0/0:37,0:37:99:0,105,1271 0/0:34,0:34:87.26:0,87,1054 0/0:31,0:31:87.23:0,87,1046 0/0:54,0:54:99:0,144,1714 0/0:31,0:31:84.24:0,84,1031 0/0:33,0:33:84.24:0,84,1016 0/0:44,0:44:99:0,117,1395 0/0:41,0:41:99:0,102,1235 0/0:46,1:47:99:0,105,1204 0/0:37,0:37:99:0,99,1172 0/0:41,0:41:99:0,111,1367 0/0:23,0:23:60.18:0,60,717 0/0:37,0:37:99:0,105,1251 0/0:43,0:43:99:0,114,1417 18 9122591 . T C 1204.45 . AC=12;AF=0.143;AN=84;BaseQRankSum=-3.982;DP=4210;DS;Dels=0.00;FS=12.372;HRun=0;HaplotypeScore=1.3341;InbreedingCoeff=-0.1741;MQ=56.67;MQ0=39;MQRankSum=-18.623;QD=0.84;ReadPosRankSum=-2.849 GT:AD:DP:GQ:PL 0/1:76,12:88:79.65:80,0,2330 0/1:73,15:88:99:173,0,2270 0/0:86,12:98:19.83:0,20,2702 0/0:126,13:139:22.47:0,22,3990 0/1:131,26:157:99:125,0,4340 0/1:128,22:150:99:103,0,4123 0/0:125,5:130:99:0,234,4287 0/1:103,17:120:28.54:29,0,3331 0/0:84,8:93:33.01:0,33,2655 0/0:66,7:73:0.30:0,0,2034 0/0:74,0:74:99:0,220,2644 0/0:98,1:99:99:0,259,3129 0/0:88,9:97:78.10:0,78,2715 0/0:64,7:71:45.19:0,45,2073 0/1:197,48:245:99:481,0,5948 0/0:50,4:54:36.02:0,36,1496 0/1:80,11:91:34.02:34,0,2555 0/0:80,0:80:99:0,229,2743 0/0:114,0:114:99:0,304,3744 0/1:107,18:126:8.35:8,0,3121 0/0:104,0:104:99:0,283,3525 0/0:74,0:74:99:0,199,2434 0/0:149,0:149:99:0,421,5251 0/0:97,0:97:99:0,274,3425 0/1:116,16:133:29.48:29,0,3620 0/0:109,8:117:99:0,161,3759 0/0:69,6:75:12.06:0,12,1999 0/0:93,0:93:99:0,244,2916 0/1:57,9:66:56.88:57,0,1830 0/0:78,0:78:99:0,214,2566 0/0:68,0:68:99:0,202,2459 0/0:93,0:93:99:0,250,3111 0/0:86,8:94:22.09:0,22,2576 0/0:80,8:88:84.27:0,84,2612 0/0:69,4:73:92.54:0,93,2275 0/0:100,7:107:99:0,121,3188 0/0:82,9:91:16.95:0,17,2478 0/0:79,7:86:54.38:0,54,2472 0/0:80,0:80:99:0,229,2757 0/1:64,15:79:99:159,0,2011 0/0:77,4:81:99:0,118,2445 0/1:85,12:97:68.02:68,0,2709 18 9122611 . T C 564.53 . AC=4;AF=0.048;AN=84;BaseQRankSum=15.327;DP=4100;DS;Dels=0.00;FS=64.768;HRun=1;HaplotypeScore=1.4215;InbreedingCoeff=-0.0582;MQ=56.46;MQ0=46;MQRankSum=-19.969;QD=0.98;ReadPosRankSum=-0.858 GT:AD:DP:GQ:PL 0/0:73,5:78:99:0,104,2385 0/1:73,17:90:99:150,0,2228 0/0:86,6:92:96.83:0,97,2678 0/0:129,10:139:70.24:0,70,3926 0/1:139,24:163:66.64:67,0,4267 0/0:130,14:144:35.48:0,35,4106 0/0:110,5:115:99:0,219,3652 0/0:114,13:127:89.81:0,90,3496 0/0:90,9:99:43.04:0,43,2713 0/0:67,6:74:2.63:1,0,1888 0/0:75,0:75:99:0,205,2438 0/0:90,0:90:99:0,235,2789 0/0:86,6:92:99:0,151,2710 0/0:62,6:68:43.63:0,44,1909 0/1:208,40:249:99:375,0,6082 0/0:57,3:60:80.72:0,81,1745 0/0:76,8:84:50.25:0,50,2356 0/0:80,0:80:99:0,229,2705 0/0:105,0:105:99:0,280,3352 0/0:111,13:125:59.33:0,59,3000 0/0:100,0:100:99:0,271,3280 0/0:72,0:72:99:0,196,2356 0/0:162,0:162:99:0,442,5375 0/0:104,0:104:99:0,295,3613 0/0:114,12:127:17.77:0,18,3451 0/0:113,7:120:99:0,197,3634 0/0:58,5:63:19.74:0,20,1736 0/0:86,0:86:99:0,229,2614 0/0:60,7:68:19.52:0,20,1801 0/0:81,0:81:99:0,226,2648 0/0:66,0:66:99:0,196,2357 0/0:91,0:91:99:0,235,2876 0/0:74,7:81:15.97:0,16,2122 0/0:68,6:74:64.04:0,64,2115 0/0:67,2:69:99:0,121,2191 0/0:90,4:95:99:0,162,2893 0/0:77,8:85:19.26:0,19,2314 0/0:72,3:75:99:0,127,2381 0/0:80,0:80:99:0,220,2651 0/1:67,10:77:59.50:59,0,2020 0/0:71,4:75:99:0,108,2276 0/0:91,9:100:33.09:0,33,2928 18 9122638 . G C 102.69 . AC=1;AF=0.012;AN=84;BaseQRankSum=10.909;DP=3885;DS;Dels=0.00;FS=74.339;HRun=1;HaplotypeScore=1.3960;InbreedingCoeff=-0.0120;MQ=57.60;MQ0=57;MQRankSum=-20.470;QD=0.42;ReadPosRankSum=3.889 GT:AD:DP:GQ:PL 0/0:77,2:79:99:0,220,2628 0/0:84,11:95:60.64:0,61,2595 0/0:72,6:78:99:0,156,2270 0/0:135,7:142:99:0,175,4274 0/0:134,14:148:99:0,207,4630 0/0:129,10:139:99:0,135,4207 0/0:101,2:103:99:0,243,3565 0/0:99,11:110:64.36:0,64,3106 0/0:103,4:107:99:0,232,3348 0/0:62,2:64:99:0,162,1990 0/0:61,3:64:99:0,168,2044 0/0:61,7:68:99:0,175,2116 0/0:96,6:102:99:0,253,3087 0/0:61,6:67:83.95:0,84,1928 0/1:210,34:246:99:149,0,5836 0/0:55,3:58:99:0,120,1819 0/0:71,4:75:99:0,126,2210 0/0:79,1:80:99:0,220,2605 0/0:98,2:100:99:0,235,3123 0/0:96,14:110:99:0,132,2912 0/0:100,0:100:99:0,247,3094 0/0:53,0:53:99:0,144,1779 0/0:154,0:154:99:0,385,5107 0/0:125,0:125:99:0,313,4160 0/0:136,6:142:99:0,258,4486 0/0:116,5:121:99:0,246,3847 0/0:49,3:52:78.61:0,79,1489 0/0:78,5:83:99:0,223,2593 0/0:64,4:68:99:0,102,2078 0/0:68,3:71:99:0,187,2282 0/0:63,0:63:99:0,175,2132 0/0:87,0:88:99:0,214,2622 0/0:60,5:65:99:0,105,1969 0/0:60,5:65:98.64:0,99,1929 0/0:64,2:66:99:0,120,2077 0/0:84,4:88:99:0,196,2749 0/0:75,4:79:99:0,116,2387 0/0:73,0:73:99:0,211,2527 0/0:86,0:86:99:0,226,2801 0/0:66,6:72:49.95:0,50,2021 0/0:65,2:67:99:0,150,2128 0/0:63,6:69:79.09:0,79,2079 18 10672782 . T A 3377.55 . AC=2;AF=0.024;AN=84;BaseQRankSum=-11.361;DP=3780;DS;Dels=0.00;FS=17.381;HRun=0;HaplotypeScore=1.3818;InbreedingCoeff=-0.0244;MQ=59.53;MQ0=0;MQRankSum=4.221;QD=12.37;ReadPosRankSum=0.289 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,162,1921 0/0:76,0:76:99:0,202,2447 0/0:66,0:66:99:0,187,2225 0/0:180,0:180:99:0,500,6099 0/0:150,0:151:99:0,427,5236 0/0:185,0:186:99:0,521,6490 0/0:159,0:160:99:0,433,5439 0/0:131,0:131:99:0,355,4348 0/0:68,0:69:99:0,193,2321 0/0:56,0:56:99:0,156,1882 0/0:69,0:69:99:0,199,2418 0/0:60,0:60:99:0,159,1950 0/0:42,0:43:99:0,120,1448 0/0:62,0:62:99:0,175,2098 0/1:113,111:227:99:2790,0,2941 0/1:24,21:46:99:588,0,708 0/0:67,0:68:99:0,199,2393 0/0:53,0:53:99:0,153,1846 0/0:78,0:78:99:0,214,2648 0/0:71,0:71:99:0,202,2423 0/0:105,0:107:99:0,283,3492 0/0:50,0:50:99:0,138,1682 0/0:186,0:186:99:0,518,6337 0/0:132,0:133:99:0,367,4503 0/0:148,0:148:99:0,421,5188 0/0:105,0:105:99:0,295,3620 0/0:51,0:51:99:0,138,1701 0/0:74,0:74:99:0,214,2551 0/0:65,0:65:99:0,181,2167 0/0:58,0:58:99:0,156,1914 0/0:53,0:53:99:0,144,1749 0/0:117,0:117:99:0,316,3822 0/0:68,1:69:99:0,171,2321 0/0:73,0:73:99:0,199,2378 0/0:71,1:72:99:0,159,2282 0/0:71,0:72:99:0,202,2469 0/0:97,0:98:99:0,259,3137 0/0:75,0:75:99:0,211,2530 0/0:63,0:63:99:0,181,2164 0/0:71,0:71:99:0,199,2409 0/0:70,0:71:99:0,202,2427 0/0:60,0:60:99:0,169,2043 18 10681711 . C T 12346.82 . 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C T 31423.58 . 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C T 1637.40 . 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C G 41760.65 . 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C G 3000.41 . AC=5;AF=0.060;AN=84;BaseQRankSum=10.569;DP=2324;Dels=0.00;FS=19.665;HRun=1;HaplotypeScore=1.3566;InbreedingCoeff=-0.0633;MQ=57.54;MQ0=4;MQRankSum=-6.757;QD=13.45;ReadPosRankSum=0.084 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,129,1421 0/1:14,17:31:99:456,0,320 0/1:22,20:42:99:540,0,546 0/0:107,0:107:99:0,268,3173 0/0:76,0:76:99:0,196,2335 0/1:27,35:62:99:863,0,751 0/1:26,25:51:99:695,0,662 0/0:52,0:52:99:0,141,1642 0/0:61,0:61:99:0,171,1882 0/0:48,0:48:99:0,129,1443 0/0:44,0:44:99:0,114,1291 0/0:47,1:48:97.60:0,98,1316 0/0:34,0:34:96.23:0,96,1023 0/0:49,0:49:99:0,117,1360 0/0:162,1:165:99:0,361,4164 0/0:37,0:37:99:0,105,1140 0/0:60,0:61:99:0,159,1818 0/0:43,0:43:99:0,111,1228 0/0:54,0:54:99:0,138,1573 0/0:63,0:63:99:0,159,1826 0/0:62,0:62:99:0,159,1821 0/0:48,0:48:99:0,132,1475 0/0:118,0:118:99:0,289,3524 0/0:53,0:53:99:0,135,1571 0/0:81,0:84:99:0,217,2606 0/0:61,0:61:99:0,147,1734 0/0:37,0:37:96.23:0,96,1033 0/0:37,0:37:99:0,105,1153 0/0:45,0:45:99:0,123,1354 0/0:51,0:51:99:0,135,1470 0/0:49,0:49:99:0,108,1228 0/0:60,0:60:99:0,141,1638 0/1:17,20:37:99:543,0,394 0/0:41,0:41:99:0,114,1227 0/0:45,0:45:99:0,114,1277 0/0:41,0:41:99:0,111,1204 0/0:60,0:60:99:0,138,1544 0/0:49,0:49:99:0,120,1365 0/0:38,0:38:99:0,105,1181 0/0:44,0:44:99:0,114,1254 0/0:31,0:32:87.20:0,87,935 0/0:51,0:51:99:0,138,1502 18 12014325 . G A 217.88 . 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G C 6.53 . 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C T 1319.81 . 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C T 230.70 . 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A G 24093.06 . 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A C 160.46 . 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C A 108782.56 . 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C T 6177.68 . 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G A 1679.05 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.681;DP=1657;Dels=0.00;FS=9.383;HRun=0;HaplotypeScore=1.1343;InbreedingCoeff=-0.0244;MQ=59.12;MQ0=0;MQRankSum=1.492;QD=15.84;ReadPosRankSum=0.504 GT:AD:DP:GQ:PL 0/0:27,0:27:75.23:0,75,923 0/0:23,0:23:63.19:0,63,779 0/0:19,0:19:54.16:0,54,648 0/0:94,0:95:99:0,250,3239 0/0:77,0:77:99:0,220,2804 0/1:31,25:56:99:719,0,1002 0/1:19,31:50:99:1022,0,558 0/0:54,0:54:99:0,138,1760 0/0:26,0:26:75.24:0,75,959 0/0:27,0:27:78.24:0,78,973 0/0:29,0:29:87.25:0,87,1067 0/0:24,0:24:72.20:0,72,859 0/0:18,0:18:51.15:0,51,615 0/0:20,0:20:54.17:0,54,674 0/0:101,0:102:99:0,274,3332 0/0:20,1:21:27.06:0,27,703 0/0:25,0:25:66.21:0,66,834 0/0:34,0:34:96.28:0,96,1160 0/0:55,0:57:99:0,150,1855 0/0:60,0:60:99:0,165,2022 0/0:55,1:57:99:0,138,1695 0/0:34,0:34:87.22:0,87,1065 0/0:102,0:102:99:0,277,3593 0/0:44,0:44:99:0,117,1523 0/0:57,0:57:99:0,163,2106 0/0:46,0:46:99:0,132,1713 0/0:17,0:17:48.15:0,48,608 0/0:25,0:25:69.20:0,69,843 0/0:23,0:23:66.19:0,66,808 0/0:30,0:30:87.25:0,87,1041 0/0:27,0:27:66.19:0,66,807 0/0:38,0:38:96.28:0,96,1172 0/0:39,0:39:99:0,108,1347 0/0:28,0:28:78.23:0,78,982 0/0:27,0:27:72.22:0,72,892 0/0:35,0:35:96.26:0,96,1158 0/0:33,0:33:93.25:0,93,1107 0/0:25,0:25:75.23:0,75,925 0/0:35,0:35:99:0,102,1224 0/0:32,0:32:90.27:0,90,1089 0/0:27,0:27:75.22:0,75,898 0/0:32,0:32:90.27:0,90,1110 18 21329443 . T G 7.46 . AC=2;AF=0.024;AN=84;BaseQRankSum=-16.148;DP=1685;Dels=0.00;FS=4.073;HRun=1;HaplotypeScore=0.8527;InbreedingCoeff=-0.0554;MQ=59.13;MQ0=0;MQRankSum=-1.149;QD=0.12;ReadPosRankSum=-2.002 GT:AD:DP:GQ:PL 0/0:23,8:31:51.14:0,51,569 0/0:23,10:33:35.45:0,35,620 0/0:24,8:32:60.12:0,60,641 0/0:40,34:74:39.91:0,40,865 0/0:48,21:69:69.85:0,70,1134 0/0:49,19:69:99:0,108,1155 0/0:39,11:50:72.52:0,73,1014 0/0:47,19:66:99:0,102,1087 0/0:26,13:39:60.06:0,60,613 0/0:17,7:24:9.48:0,9,367 0/0:11,13:24:15.04:0,15,176 0/0:21,9:30:51.11:0,51,558 0/0:18,5:23:42.11:0,42,475 0/0:24,9:33:41.33:0,41,566 0/0:70,41:111:70.44:0,70,1528 0/0:17,7:24:10.55:0,11,399 0/0:16,14:30:2.44:1,0,417 0/0:22,10:32:51.13:0,51,573 0/1:16,13:30:48.13:48,0,382 0/0:33,7:40:84.16:0,84,901 0/0:22,17:39:0.96:6,0,488 0/0:20,9:29:45.08:0,45,459 0/0:49,27:76:99:0,111,1147 0/0:36,13:49:75.14:0,75,788 0/0:48,16:64:99:0,102,1092 0/0:38,12:50:84.13:0,84,865 0/0:20,6:26:0.76:7,0,377 0/0:21,9:30:54.12:0,54,574 0/0:15,7:22:27.05:0,27,292 0/0:21,11:32:54.08:0,54,581 0/0:19,10:29:48.06:0,48,493 0/0:33,13:46:61.50:0,61,870 0/0:25,7:32:51.08:0,51,543 0/0:34,8:42:66.15:0,66,702 0/0:23,11:34:29.40:0,29,483 0/0:20,10:30:27.50:0,28,564 0/1:17,15:32:16.12:16,0,362 0/0:25,5:30:57.09:0,57,594 0/0:18,6:24:33.07:0,33,353 0/0:21,9:30:57.11:0,57,603 0/0:29,9:38:52.50:0,53,803 0/0:21,15:37:51.11:0,51,560 18 21413869 . T C 152603.03 . AC=57;AF=0.679;AN=84;BaseQRankSum=16.170;DP=7653;DS;Dels=0.00;FS=50.257;HRun=1;HaplotypeScore=4.4199;InbreedingCoeff=-0.1462;MQ=59.48;MQ0=1;MQRankSum=-1.758;QD=21.83;ReadPosRankSum=-2.460 GT:AD:DP:GQ:PL 1/1:0,165:166:99:5402,442,0 1/1:1,144:145:99:4721,346,0 1/1:0,151:151:99:5189,421,0 0/1:124,122:246:99:3778,0,3686 0/1:126,124:250:99:3810,0,3715 0/0:248,2:250:99:0,608,8626 0/0:248,1:250:99:0,668,8462 0/1:135,114:250:99:3237,0,3976 0/1:75,83:158:99:2325,0,2178 0/1:67,67:134:99:1809,0,1929 0/1:61,84:145:99:2547,0,1700 1/1:0,136:136:99:4848,394,0 1/1:1,131:132:99:4391,323,0 0/1:83,80:163:99:2392,0,2345 0/1:123,125:248:99:3478,0,3487 0/1:56,68:124:99:1792,0,1556 0/1:86,78:164:99:2119,0,2507 1/1:0,134:134:99:4601,373,0 0/1:131,115:250:99:3088,0,3672 0/1:128,122:250:99:3529,0,3719 0/1:127,117:245:99:3148,0,3399 1/1:0,213:214:99:7043,575,0 0/1:131,118:250:99:3579,0,3691 1/1:0,245:246:99:8445,647,0 1/1:2,248:250:99:8743,648,0 1/1:0,213:213:99:7368,569,0 1/1:0,114:114:99:3963,319,0 0/1:79,70:149:99:1866,0,2255 0/1:73,57:132:99:1675,0,2184 1/1:1,133:134:99:4499,332,0 1/1:0,125:125:99:4261,349,0 0/1:126,123:249:99:3416,0,3551 0/1:113,98:211:99:2670,0,3260 1/1:0,139:139:99:4717,382,0 1/1:1,142:143:99:4789,363,0 1/1:2,140:142:99:4641,340,0 0/1:117,118:235:99:3101,0,3240 1/1:0,127:127:99:4228,346,0 0/0:162,1:163:99:0,418,5529 0/1:82,61:143:99:1710,0,2385 1/1:3,104:107:99:3453,195,0 0/1:94,80:174:99:2230,0,2719 18 21424991 . C A 1958.50 . AC=4;AF=0.048;AN=84;BaseQRankSum=-9.775;DP=2548;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.3166;InbreedingCoeff=-0.0500;MQ=59.30;MQ0=1;MQRankSum=4.619;QD=10.94;ReadPosRankSum=-1.680 GT:AD:DP:GQ:PL 0/1:30,17:47:99:437,0,846 0/0:61,0:61:99:0,169,2143 0/0:42,0:42:99:0,117,1498 0/0:105,0:105:99:0,274,3703 0/0:84,0:84:99:0,226,3093 0/0:79,0:79:99:0,223,2978 0/0:61,0:61:99:0,163,2176 0/0:81,0:81:99:0,220,2929 0/0:68,0:68:99:0,187,2365 0/0:58,0:58:99:0,153,1941 0/0:48,0:48:99:0,135,1718 0/0:48,0:48:99:0,129,1632 0/0:38,0:38:96.30:0,96,1238 0/0:48,0:48:99:0,129,1615 0/0:206,0:206:99:0,539,6816 0/1:26,13:39:99:339,0,845 0/0:58,0:58:99:0,169,2125 0/0:54,0:54:99:0,147,1885 0/0:63,1:64:99:0,165,2040 0/0:62,0:62:99:0,159,2078 0/1:25,29:54:99:798,0,628 0/1:22,17:39:99:472,0,675 0/0:79,0:79:99:0,214,2914 0/0:71,0:71:99:0,199,2694 0/0:76,0:76:99:0,199,2703 0/0:55,0:55:99:0,154,2076 0/0:37,0:37:99:0,105,1327 0/0:57,0:57:99:0,156,1995 0/0:51,0:51:99:0,147,1861 0/0:62,0:62:99:0,172,2163 0/0:44,0:44:99:0,132,1660 0/0:76,0:76:99:0,205,2621 0/0:38,0:38:99:0,108,1359 0/0:43,0:43:99:0,117,1467 0/0:40,0:40:99:0,114,1400 0/0:66,0:66:99:0,178,2258 0/0:72,0:72:99:0,183,2250 0/0:59,0:59:99:0,166,2114 0/0:42,0:42:99:0,108,1395 0/0:46,0:46:99:0,129,1591 0/0:43,0:43:99:0,120,1516 0/0:47,0:47:99:0,129,1658 18 21441702 . T C 1536 . AC=4;AF=0.048;AN=84;BaseQRankSum=2.399;DP=953;Dels=0.00;FS=4.518;HRun=1;HaplotypeScore=0.7005;InbreedingCoeff=-0.0503;MQ=59.08;MQ0=0;MQRankSum=0.599;QD=11.05;ReadPosRankSum=-0.203 GT:AD:DP:GQ:PL 0/0:11,1:12:33.08:0,33,362 0/0:19,1:20:54.15:0,54,621 0/0:12,0:12:33.08:0,33,374 0/0:46,0:46:99:0,129,1453 0/0:40,0:40:99:0,108,1186 0/0:33,0:33:90.24:0,90,1048 0/0:36,0:36:99:0,102,1206 0/0:25,1:26:72.18:0,72,802 0/0:13,0:13:36.10:0,36,410 0/0:15,0:15:39.09:0,39,419 0/0:9,0:9:24.06:0,24,271 0/0:19,0:19:51.14:0,51,595 0/0:14,0:14:36.08:0,36,401 0/0:18,0:18:42.12:0,42,495 0/1:30,27:58:99:728,0,598 0/1:10,11:21:99:305,0,240 0/0:19,0:19:54.15:0,54,626 0/0:23,0:23:63.14:0,63,705 0/1:17,17:35:99:384,0,391 0/1:14,10:25:99:206,0,376 0/0:38,0:38:99:0,99,1182 0/0:17,0:17:45.12:0,45,511 0/0:42,0:42:99:0,120,1404 0/0:21,0:21:51.14:0,51,589 0/0:23,0:23:60.15:0,60,666 0/0:19,0:19:57.16:0,57,652 0/0:11,0:11:33.09:0,33,371 0/0:7,0:7:18.05:0,18,199 0/0:16,0:16:42.13:0,42,496 0/0:16,0:18:39.09:0,39,453 0/0:19,0:19:54.14:0,54,612 0/0:35,0:35:90.26:0,90,1057 0/0:19,0:19:42.12:0,42,479 0/0:18,0:18:45.11:0,45,501 0/0:15,0:15:45.11:0,45,521 0/0:20,1:21:42.12:0,42,482 0/0:25,0:25:69.19:0,69,805 0/0:21,0:21:63.17:0,63,721 0/0:20,2:23:60.13:0,60,658 0/0:14,0:14:30.08:0,30,357 0/0:12,0:12:27.06:0,27,297 0/0:25,0:25:63.18:0,63,742 18 21441717 . C T 16490.58 . AC=53;AF=0.631;AN=84;BaseQRankSum=6.254;DP=968;Dels=0.00;FS=10.935;HRun=0;HaplotypeScore=0.8959;InbreedingCoeff=-0.0608;MQ=58.92;MQ0=0;MQRankSum=-0.734;QD=19.94;ReadPosRankSum=-2.795 GT:AD:DP:GQ:PL 0/1:9,5:14:99:139,0,260 1/1:0,16:16:39.09:447,39,0 1/1:0,12:12:36.10:409,36,0 0/1:27,17:44:99:462,0,671 0/1:14,23:37:99:698,0,374 0/0:32,1:33:53.95:0,54,1066 0/0:28,0:28:75.18:0,75,895 0/1:17,8:25:99:211,0,525 0/1:12,8:20:99:186,0,335 0/1:7,12:19:99:364,0,141 0/1:9,2:11:6.07:6,0,274 1/1:0,23:23:63.17:759,63,0 1/1:1,16:17:45.13:532,45,0 0/1:8,8:16:99:226,0,203 0/1:30,37:69:99:1043,0,732 0/0:21,0:21:54.14:0,54,609 0/1:6,9:15:99:255,0,156 1/1:0,17:17:48.13:551,48,0 0/1:20,18:38:99:381,0,490 0/1:10,17:27:99:544,0,213 0/0:34,0:35:93.25:0,93,1085 0/1:7,12:19:99:264,0,170 0/1:13,23:36:99:610,0,316 1/1:0,25:25:66.21:833,66,0 1/1:0,21:21:60.17:711,60,0 1/1:0,17:17:51.12:603,51,0 1/1:0,14:14:39.11:452,39,0 0/1:6,8:14:99:181,0,147 0/1:5,10:15:99:243,0,114 1/1:0,22:22:57.15:677,57,0 1/1:0,19:19:51.15:610,51,0 0/1:21,9:31:99:200,0,561 0/1:9,8:17:99:216,0,223 1/1:0,21:22:57.16:664,57,0 1/1:0,12:12:36.10:421,36,0 1/1:0,25:25:63.18:755,63,0 0/1:17,7:25:99:115,0,479 1/1:0,21:21:60.19:744,60,0 0/0:24,0:24:69.15:0,69,762 0/1:6,7:13:99:208,0,152 1/1:0,17:17:48.14:583,48,0 0/1:14,8:22:99:187,0,375 18 21501003 . C T 2010.03 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.897;DP=2854;Dels=0.00;FS=6.561;HRun=0;HaplotypeScore=0.8612;InbreedingCoeff=-0.0244;MQ=59.38;MQ0=0;MQRankSum=1.013;QD=13.40;ReadPosRankSum=-0.851 GT:AD:DP:GQ:PL 0/0:62,0:62:99:0,150,1791 0/0:58,0:58:99:0,168,1879 0/0:65,0:65:99:0,165,1937 0/0:76,1:77:99:0,173,2487 0/0:93,0:93:99:0,256,3240 0/0:67,0:67:99:0,187,2305 0/0:56,0:56:99:0,141,1806 0/0:55,0:55:99:0,147,1813 0/0:61,0:61:99:0,162,1862 0/0:66,0:66:99:0,174,2003 0/0:53,0:53:99:0,147,1639 0/0:67,0:67:99:0,180,2063 0/0:41,0:41:99:0,120,1353 0/0:61,0:61:99:0,174,1954 0/0:219,0:219:99:0,535,6331 0/0:53,0:53:99:0,147,1657 0/0:60,0:60:99:0,156,1844 0/0:52,0:53:99:0,147,1648 0/0:91,0:91:99:0,226,2650 0/0:107,0:107:99:0,271,3182 0/1:48,52:100:99:1296,0,1187 0/1:24,26:50:99:777,0,662 0/0:73,0:73:99:0,193,2452 0/0:53,0:53:99:0,135,1713 0/0:80,0:80:99:0,223,2759 0/0:73,0:73:99:0,199,2504 0/0:48,0:48:99:0,123,1441 0/0:57,0:57:99:0,150,1746 0/0:58,0:58:99:0,159,1826 0/0:58,0:58:99:0,150,1753 0/0:47,0:47:99:0,129,1500 0/0:89,0:89:99:0,220,2565 0/0:70,0:70:99:0,171,2049 0/0:48,0:48:99:0,132,1501 0/0:51,0:51:99:0,132,1547 0/0:65,0:65:99:0,165,1939 0/0:81,0:81:99:0,217,2502 0/0:62,0:62:99:0,174,1976 0/0:50,0:50:99:0,138,1623 0/0:71,0:71:99:0,208,2306 0/0:48,0:48:99:0,135,1532 0/0:57,0:57:99:0,162,1823 18 21511034 . C A 29715.41 . AC=14;AF=0.167;AN=84;BaseQRankSum=-16.179;DP=6457;DS;Dels=0.00;FS=1.976;HRun=2;HaplotypeScore=2.4613;InbreedingCoeff=-0.0286;MQ=59.58;MQ0=0;MQRankSum=-0.933;QD=13.94;ReadPosRankSum=-0.537 GT:AD:DP:GQ:PL 0/0:121,0:121:99:0,310,3908 0/0:150,0:150:99:0,397,4984 0/0:101,3:104:99:0,215,3429 0/0:250,0:250:99:0,641,8591 0/1:124,96:220:99:2483,0,3858 0/1:135,115:250:99:3280,0,3969 0/0:241,0:241:99:0,584,7956 0/1:84,110:194:99:3270,0,2507 0/1:60,62:122:99:1677,0,1770 0/1:56,58:114:99:1556,0,1604 0/0:106,0:106:99:0,286,3617 0/0:124,1:125:99:0,331,4135 0/0:90,0:90:99:0,229,2919 0/0:97,0:97:99:0,259,3287 0/1:123,125:248:99:3443,0,3376 0/1:57,30:87:99:793,0,1687 0/0:102,3:105:99:0,229,3365 0/0:144,0:144:99:0,370,4728 0/0:207,0:207:99:0,527,6535 0/0:195,1:196:99:0,478,6119 0/1:96,88:184:99:2342,0,2410 0/0:138,0:138:99:0,349,4474 0/0:249,0:249:99:0,650,8880 0/0:217,0:217:99:0,563,7691 0/0:248,0:248:99:0,590,8047 0/0:229,0:229:99:0,569,7732 0/0:97,0:97:99:0,256,3246 0/1:59,57:116:99:1576,0,1718 0/1:58,62:120:99:1575,0,1649 0/0:128,0:128:99:0,334,4219 0/0:112,0:112:99:0,298,3743 0/1:129,61:190:99:1451,0,3636 0/0:141,0:141:99:0,361,4581 0/0:88,0:89:99:0,238,2990 0/0:112,2:114:99:0,222,3631 0/0:141,0:141:99:0,373,4645 0/1:84,84:168:99:2295,0,2283 0/0:121,0:121:99:0,325,4074 1/1:1,117:119:99:3975,292,0 0/0:150,0:150:99:0,382,4726 0/0:104,1:105:99:0,245,3484 0/0:110,0:110:99:0,286,3627 18 21511088 . C CG 576.80 . 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A G 156215.41 . AC=84;AF=1.000;AN=84;BaseQRankSum=1.445;DP=4586;DS;Dels=0.00;FS=4.919;HRun=1;HaplotypeScore=4.4399;InbreedingCoeff=0.0000;MQ=59.12;MQ0=0;MQRankSum=0.569;QD=34.06;ReadPosRankSum=-0.922 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2726,232,0 1/1:0,104:104:99:3377,277,0 1/1:0,86:86:99:2737,226,0 1/1:0,166:166:99:6094,472,0 1/1:0,149:149:99:5362,415,0 1/1:0,168:168:99:6100,475,0 1/1:0,150:150:99:5478,421,0 1/1:0,157:157:99:5454,421,0 1/1:0,100:101:99:3401,280,0 1/1:0,81:81:99:2736,226,0 1/1:0,75:75:99:2529,208,0 1/1:0,93:93:99:3109,259,0 1/1:0,69:69:99:2233,187,0 1/1:1,84:85:99:2813,203,0 1/1:1,244:245:99:7995,632,0 1/1:0,55:56:99:1920,159,0 1/1:0,76:76:99:2516,208,0 1/1:0,82:82:99:2661,217,0 1/1:0,148:149:99:4810,394,0 1/1:0,150:151:99:4774,388,0 1/1:0,112:114:99:3786,307,0 1/1:0,95:95:99:3258,271,0 1/1:1,176:177:99:6419,474,0 1/1:0,179:179:99:6224,484,0 1/1:1,146:147:99:5182,372,0 1/1:0,163:163:99:5737,451,0 1/1:0,73:73:99:2323,196,0 1/1:0,78:79:99:2808,232,0 1/1:0,84:84:99:2811,232,0 1/1:0,90:90:99:2962,250,0 1/1:0,78:78:99:2766,229,0 1/1:0,126:126:99:4105,334,0 1/1:0,100:100:99:3424,283,0 1/1:0,63:63:99:2209,183,0 1/1:0,76:76:99:2620,211,0 1/1:0,110:110:99:3702,307,0 1/1:0,103:104:99:3405,277,0 1/1:0,83:83:99:2849,238,0 1/1:0,82:83:99:2781,235,0 1/1:0,95:95:99:3290,271,0 1/1:0,61:61:99:2092,175,0 1/1:0,77:77:99:2638,220,0 18 21708923 . A G 1078.87 . 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A G 24886.57 . AC=15;AF=0.179;AN=84;BaseQRankSum=-10.112;DP=6500;DS;Dels=0.00;FS=2.493;HRun=1;HaplotypeScore=2.6111;InbreedingCoeff=-0.0551;MQ=59.55;MQ0=1;MQRankSum=1.398;QD=12.83;ReadPosRankSum=-1.127 GT:AD:DP:GQ:PL 0/0:135,2:138:99:0,315,4593 0/0:132,0:132:99:0,367,4582 0/0:147,0:147:99:0,400,4992 0/0:209,0:209:99:0,584,7369 0/1:116,95:212:99:2822,0,3470 0/1:127,93:220:99:2807,0,3774 0/1:136,88:224:99:2327,0,4244 0/0:221,0:221:99:0,626,7885 0/1:64,45:109:99:1193,0,1858 0/1:61,54:115:99:1370,0,1813 0/1:58,64:123:99:1811,0,1669 0/0:112,0:112:99:0,301,3771 0/0:122,0:122:99:0,328,4097 0/0:133,0:133:99:0,361,4497 0/0:247,0:247:99:0,668,8231 0/0:104,0:105:99:0,280,3482 0/0:125,0:125:99:0,352,4404 0/1:57,58:115:99:1551,0,1662 0/0:213,0:214:99:0,539,6851 0/1:96,58:154:99:1515,0,2615 0/0:169,0:169:99:0,451,5640 0/0:96,0:96:99:0,250,3106 0/0:240,0:240:99:0,683,8653 0/0:215,0:215:99:0,599,7646 0/0:248,1:249:99:0,665,8511 0/0:228,0:228:99:0,626,7919 0/1:50,35:85:99:910,0,1474 0/1:72,37:109:99:956,0,2042 0/0:120,0:121:99:0,319,4020 0/1:76,53:129:99:1279,0,2285 0/1:62,47:109:99:1211,0,1818 0/0:187,0:187:99:0,494,6217 0/0:106,0:106:99:0,298,3709 0/1:62,61:123:99:1591,0,1724 1/1:3,110:113:99:3545,201,0 0/0:160,0:160:99:0,430,5393 0/0:176,1:177:99:0,451,5625 0/0:170,0:170:99:0,442,5540 0/0:137,0:137:99:0,388,4802 0/0:135,0:135:99:0,361,4563 0/0:130,2:132:99:0,290,4337 0/0:132,1:133:99:0,332,4568 18 21891990 . C T 10866.07 . 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T A 30310.85 . AC=23;AF=0.274;AN=84;BaseQRankSum=25.726;DP=3922;DS;Dels=0.00;FS=0.924;HRun=1;HaplotypeScore=0.9726;InbreedingCoeff=0.1019;MQ=59.52;MQ0=0;MQRankSum=-0.298;QD=18.26;ReadPosRankSum=-0.879 GT:AD:DP:GQ:PL 0/1:34,34:68:99:1076,0,891 0/1:49,40:89:99:1055,0,1309 0/0:65,0:66:99:0,178,2182 0/1:77,76:153:99:2343,0,2093 0/1:79,67:146:99:2012,0,2258 0/0:159,0:159:99:0,433,5453 0/0:123,0:123:99:0,346,4311 0/0:109,0:109:99:0,304,3746 0/1:28,40:68:99:1133,0,774 0/1:34,34:68:99:962,0,966 0/0:73,0:73:99:0,199,2406 0/0:100,0:100:99:0,268,3275 0/0:52,0:52:99:0,147,1776 0/0:63,0:63:99:0,175,2112 0/0:250,0:250:99:0,668,8113 0/0:61,0:61:99:0,162,1997 0/1:47,37:84:99:1060,0,1274 0/1:50,47:97:99:1330,0,1391 0/0:106,0:106:99:0,283,3507 0/0:91,0:91:99:0,232,2884 1/1:0,77:77:99:2440,190,0 1/1:0,53:53:99:1856,147,0 0/0:166,0:166:99:0,448,5539 0/0:114,0:114:99:0,325,3949 0/0:137,1:138:99:0,359,4772 0/1:77,72:149:99:2134,0,2251 0/0:61,0:61:99:0,165,2003 0/0:71,0:71:99:0,184,2253 0/0:55,0:55:99:0,156,1854 1/1:0,73:73:99:2529,202,0 0/1:43,39:82:99:1170,0,1170 1/1:0,105:105:99:3651,289,0 0/1:34,39:73:99:1111,0,923 0/0:76,0:76:99:0,214,2593 0/0:71,1:72:99:0,158,2326 0/1:29,46:76:99:1349,0,780 0/0:96,0:96:99:0,256,3173 0/1:24,32:56:99:987,0,640 0/0:86,0:86:99:0,232,2830 0/1:42,37:79:99:1074,0,1210 0/1:29,34:64:99:1039,0,773 0/0:74,0:74:99:0,208,2513 18 22020543 . C G 178792.55 . AC=79;AF=0.940;AN=84;BaseQRankSum=-7.396;DP=5521;DS;Dels=0.00;FS=6.093;HRun=1;HaplotypeScore=1.7086;InbreedingCoeff=-0.0633;MQ=59.61;MQ0=0;MQRankSum=-0.753;QD=32.38;ReadPosRankSum=-2.182 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3874,310,0 1/1:0,109:109:99:3818,301,0 1/1:0,84:84:99:2968,238,0 1/1:0,235:237:99:8754,650,0 1/1:0,223:223:99:8524,629,0 1/1:0,240:240:99:8869,650,0 1/1:1,245:246:99:9146,668,0 1/1:0,225:225:99:8323,617,0 1/1:0,109:109:99:3712,292,0 1/1:0,78:80:99:2744,220,0 1/1:0,113:113:99:4063,319,0 1/1:0,97:97:99:3443,274,0 1/1:0,89:89:99:2997,235,0 1/1:0,92:92:99:3249,256,0 1/1:0,249:249:99:8535,671,0 1/1:0,72:72:99:2543,202,0 1/1:0,92:92:99:3216,256,0 1/1:0,93:93:99:3280,262,0 1/1:0,158:158:99:5359,430,0 1/1:0,126:126:99:4382,340,0 1/1:0,118:118:99:3758,298,0 1/1:0,85:86:99:3013,238,0 0/1:129,121:250:99:3931,0,4184 1/1:0,222:222:99:8146,602,0 0/1:100,109:209:99:3309,0,3225 1/1:0,232:232:99:8347,614,0 1/1:0,75:75:99:2667,211,0 0/1:64,42:106:99:1099,0,1994 1/1:0,98:98:99:3330,259,0 1/1:0,95:95:99:3282,256,0 1/1:0,99:99:99:3484,277,0 1/1:0,118:119:99:3911,301,0 1/1:0,58:58:99:1948,153,0 1/1:0,109:109:99:3758,295,0 1/1:0,91:91:99:3122,244,0 1/1:0,107:107:99:3729,295,0 1/1:0,104:104:99:3431,283,0 1/1:0,95:95:99:3307,262,0 1/1:0,101:101:99:3549,283,0 0/1:63,40:104:99:1150,0,1791 1/1:0,90:90:99:3197,253,0 0/1:59,50:109:99:1527,0,1757 18 25532304 . T C 2435.72 . 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G A 17904.99 . 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A C 41165.72 . 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C T 5344.32 . 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C T 401.32 . 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A C 134582.87 . 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C T 5401.15 . 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C T 1631.03 . 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T C 104794.79 . 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G A 1435.87 . 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G A 9177.84 . 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C T 1658.14 . 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C T 17709.69 . 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C T 1434.08 . 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C A 473.18 . 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T C 1637.33 . 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T TC 393.23 . 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A C 23572.40 . 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C T 27224.86 . 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A G 919.32 . 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G A 1317.63 . 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T C 4186.88 . 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C T 838.96 . 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G A 1376.34 . 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G C 668.83 . 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G A 2681.22 . 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C T 402.73 . 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T C 2057.57 . AC=2;AF=0.024;AN=84;BaseQRankSum=10.121;DP=2562;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.0643;InbreedingCoeff=-0.0244;MQ=59.42;MQ0=0;MQRankSum=-0.140;QD=12.03;ReadPosRankSum=1.116 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,108,1256 0/0:44,1:45:94.83:0,95,1440 0/0:48,0:48:99:0,135,1576 0/0:136,0:136:99:0,385,4511 0/0:115,0:115:99:0,319,3820 0/0:73,0:73:99:0,214,2583 0/0:78,0:78:99:0,229,2684 0/0:69,0:69:99:0,199,2322 0/0:56,0:56:99:0,162,1883 0/0:42,0:42:99:0,120,1412 0/0:34,0:34:99:0,99,1142 0/0:30,0:30:84.22:0,84,977 0/0:38,0:38:99:0,105,1226 0/0:54,0:54:99:0,150,1770 0/0:137,0:137:99:0,370,4322 0/0:40,0:40:99:0,108,1293 0/0:46,0:46:99:0,132,1541 0/0:50,0:50:99:0,147,1723 0/0:65,0:65:99:0,184,2195 0/0:88,0:88:99:0,247,2925 0/1:46,30:76:99:821,0,1326 0/0:52,0:52:99:0,147,1700 0/0:135,0:135:99:0,379,4493 0/0:55,0:55:99:0,153,1837 0/0:77,0:77:99:0,226,2644 0/0:68,0:68:99:0,196,2290 0/0:39,0:39:99:0,114,1331 0/0:52,0:52:99:0,150,1757 0/0:43,0:43:99:0,123,1412 0/0:44,0:44:99:0,123,1452 0/0:44,0:44:99:0,123,1430 0/1:48,46:95:99:1299,0,1362 0/0:53,0:53:99:0,141,1681 0/0:36,0:37:99:0,105,1254 0/0:43,0:43:99:0,126,1460 0/0:43,0:43:99:0,123,1451 0/0:87,0:87:99:0,226,2744 0/0:41,0:41:99:0,117,1350 0/0:47,0:47:99:0,135,1592 0/0:52,0:52:99:0,150,1760 0/0:52,0:52:99:0,147,1722 0/0:43,0:43:99:0,123,1460 18 43481075 . G A 19316.88 . AC=23;AF=0.274;AN=84;BaseQRankSum=-13.222;DP=2328;Dels=0.00;FS=3.803;HRun=1;HaplotypeScore=1.6061;InbreedingCoeff=0.1019;MQ=59.35;MQ0=0;MQRankSum=-0.063;QD=16.90;ReadPosRankSum=0.940 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,105,1296 0/0:43,0:43:99:0,117,1409 0/0:48,0:48:99:0,135,1640 0/1:71,57:128:99:1442,0,2271 0/0:127,0:128:99:0,343,4584 1/1:0,75:75:99:2612,211,0 0/1:33,31:64:99:814,0,960 1/1:0,64:64:99:2203,181,0 0/0:32,0:32:84.23:0,84,1015 0/0:35,0:35:96.30:0,96,1190 0/0:36,0:36:99:0,99,1250 0/1:15,16:31:99:451,0,430 0/0:38,0:38:99:0,99,1252 0/1:23,23:46:99:671,0,695 0/0:127,0:127:99:0,337,4155 0/1:22,24:46:99:669,0,615 0/0:45,0:45:99:0,126,1553 0/1:17,20:37:99:545,0,516 0/0:52,0:52:99:0,132,1641 0/0:72,0:72:99:0,205,2526 0/0:50,0:51:99:0,126,1522 0/0:36,0:37:99:0,105,1302 0/1:86,64:150:99:1635,0,2707 0/1:39,41:81:99:1060,0,1308 0/1:43,30:74:99:803,0,1301 1/1:0,53:53:99:1843,150,0 0/1:14,10:24:99:278,0,395 1/1:0,41:42:99:1365,117,0 0/0:37,0:38:99:0,105,1269 0/0:41,0:41:99:0,114,1400 0/0:41,0:42:99:0,114,1405 0/0:87,0:87:99:0,229,2870 0/0:56,0:56:99:0,156,1918 0/0:28,0:29:84.25:0,84,1023 0/0:38,0:38:99:0,108,1336 0/0:37,0:37:99:0,99,1221 0/1:26,33:60:99:948,0,595 0/0:36,0:36:99:0,105,1273 0/1:19,16:35:99:381,0,562 0/1:26,20:46:99:523,0,809 0/1:24,15:39:99:424,0,629 0/1:25,23:48:99:648,0,748 18 43490602 . G A 29650.19 . AC=23;AF=0.274;AN=84;BaseQRankSum=-14.614;DP=3104;Dels=0.00;FS=0.139;HRun=0;HaplotypeScore=1.6265;InbreedingCoeff=0.1019;MQ=59.47;MQ0=0;MQRankSum=0.701;QD=19.82;ReadPosRankSum=1.094 GT:AD:DP:GQ:PL 0/0:68,0:68:99:0,178,2196 0/0:50,0:50:99:0,135,1639 0/0:61,0:61:99:0,178,2219 0/1:79,81:160:99:2382,0,2524 0/0:113,0:113:99:0,328,4300 1/1:0,114:114:99:4043,325,0 0/1:41,55:96:99:1660,0,1207 1/1:1,102:103:99:3566,298,0 0/0:45,0:45:99:0,129,1591 0/0:37,0:37:99:0,105,1318 0/0:50,0:50:99:0,141,1737 0/1:24,20:44:99:517,0,721 0/0:68,0:68:99:0,193,2366 0/1:23,24:47:99:721,0,716 0/0:171,0:171:99:0,448,5532 0/1:25,28:53:99:829,0,724 0/0:54,0:54:99:0,144,1777 0/1:23,30:53:99:889,0,633 0/0:92,0:93:99:0,250,2973 0/0:105,0:105:99:0,298,3682 0/0:89,0:89:99:0,244,2956 0/0:69,0:69:99:0,202,2456 0/1:75,83:158:99:2366,0,2188 0/1:47,48:95:99:1290,0,1461 0/1:45,47:92:99:1400,0,1319 1/1:0,98:98:99:3385,277,0 0/1:20,25:45:99:674,0,570 1/1:0,57:57:99:1949,162,0 0/0:42,0:42:99:0,120,1481 0/0:50,0:50:99:0,141,1737 0/0:72,0:72:99:0,211,2549 0/0:91,0:91:99:0,244,3055 0/0:58,0:58:99:0,166,2038 0/0:50,0:50:99:0,144,1796 0/0:51,0:51:99:0,135,1660 0/0:53,0:54:99:0,144,1755 0/1:44,43:87:99:1149,0,1298 0/0:67,0:67:99:0,184,2253 0/1:26,34:60:99:1030,0,766 0/1:26,22:48:99:626,0,740 0/1:18,24:42:99:694,0,502 0/1:27,17:44:99:478,0,835 18 43496508 . G A 356.76 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.248;DP=1610;Dels=0.00;FS=2.133;HRun=0;HaplotypeScore=0.7654;InbreedingCoeff=-0.0120;MQ=58.93;MQ0=0;MQRankSum=0.730;QD=8.49;ReadPosRankSum=-2.019 GT:AD:DP:GQ:PL 0/0:33,0:33:84.26:0,84,1060 0/0:27,0:27:78.23:0,78,935 0/0:23,0:23:66.20:0,66,808 0/0:56,0:56:99:0,147,1901 0/0:67,0:67:99:0,175,2306 0/0:40,0:40:99:0,105,1366 0/0:38,0:38:99:0,99,1287 0/0:34,0:34:90.27:0,90,1168 0/0:29,0:29:81.24:0,81,962 0/0:30,0:30:78.22:0,78,931 0/0:28,1:29:41.25:0,41,863 0/0:31,0:31:81.20:0,81,968 0/0:27,0:27:72.18:0,72,857 0/0:39,0:39:99:0,105,1272 0/0:118,0:118:99:0,292,3638 0/0:29,0:29:75.23:0,75,926 0/0:33,0:33:93.28:0,93,1137 0/0:28,0:29:75.22:0,75,892 0/0:44,0:44:99:0,120,1421 0/0:41,0:41:99:0,117,1354 0/0:37,0:37:99:0,108,1288 0/0:30,0:30:87.22:0,87,985 0/0:51,0:51:99:0,141,1837 0/0:29,0:29:84.25:0,84,1052 0/0:30,0:30:81.26:0,81,1052 0/0:29,0:29:78.25:0,78,1013 0/0:34,0:34:99:0,99,1148 0/0:41,0:41:99:0,120,1405 0/0:28,0:28:72.17:0,72,830 0/0:32,1:33:69.63:0,70,1078 0/0:30,0:31:84.25:0,84,1009 0/0:53,0:53:99:0,138,1676 0/0:45,0:45:99:0,132,1587 0/0:31,0:31:93.28:0,93,1121 0/0:30,0:30:84.24:0,84,993 0/0:36,0:36:96.28:0,96,1171 0/0:52,0:52:99:0,141,1662 0/1:26,16:42:99:403,0,731 0/0:44,0:44:99:0,117,1424 0/0:42,1:43:99:0,117,1408 0/0:24,0:24:69.22:0,69,867 0/0:39,0:39:99:0,105,1264 18 43496539 . G A 441.71 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.305;DP=1290;Dels=0.00;FS=0.931;HRun=1;HaplotypeScore=1.0614;InbreedingCoeff=-0.0244;MQ=58.89;MQ0=0;MQRankSum=0.094;QD=9.20;ReadPosRankSum=-1.925 GT:AD:DP:GQ:PL 0/1:13,12:25:99:287,0,337 0/1:14,9:23:99:217,0,400 0/0:19,0:19:54.12:0,54,626 0/0:48,0:48:99:0,132,1627 0/0:46,0:46:99:0,117,1451 0/0:30,1:31:81.25:0,81,1023 0/0:26,0:26:69.22:0,69,887 0/0:24,0:24:57.16:0,57,738 0/0:25,0:25:66.17:0,66,770 0/0:24,0:24:63.15:0,63,741 0/0:32,0:32:81.22:0,81,979 0/0:14,0:14:42.12:0,42,485 0/0:23,0:23:69.14:0,69,765 0/0:32,0:32:87.23:0,87,1007 0/0:116,0:116:99:0,295,3595 0/0:24,0:24:60.18:0,60,729 0/0:27,1:28:75.21:0,75,885 0/0:19,0:19:57.12:0,57,639 0/0:37,0:37:96.19:0,96,1062 0/0:32,0:32:81.21:0,81,931 0/0:33,0:33:84.17:0,84,947 0/0:27,0:27:72.17:0,72,810 0/0:37,0:37:96.30:0,96,1230 0/0:21,0:21:60.18:0,60,753 0/0:24,0:24:66.17:0,66,810 0/0:22,0:22:45.14:0,45,593 0/0:32,0:32:81.21:0,81,951 0/0:32,0:32:81.18:0,81,946 0/0:24,0:24:57.17:0,57,692 0/0:25,0:25:72.19:0,72,817 0/0:19,0:19:54.15:0,54,638 0/0:40,0:40:99:0,108,1268 0/0:29,0:29:75.22:0,75,914 0/0:21,0:21:63.19:0,63,756 0/0:27,0:27:81.17:0,81,901 0/0:26,0:26:69.16:0,69,839 0/0:42,0:42:99:0,114,1327 0/0:39,0:39:99:0,105,1214 0/0:37,0:37:99:0,102,1187 0/0:32,0:32:87.25:0,87,1039 0/0:21,1:22:57.15:0,57,681 0/0:31,0:31:84.23:0,84,981 18 43523997 . T C 1869.23 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.438;DP=4209;DS;Dels=0.00;FS=9.743;HRun=1;HaplotypeScore=1.5076;InbreedingCoeff=-0.0244;MQ=59.21;MQ0=1;MQRankSum=1.072;QD=13.55;ReadPosRankSum=-1.271 GT:AD:DP:GQ:PL 0/0:69,0:69:99:0,190,2410 0/0:91,0:91:99:0,244,3063 0/0:66,0:66:99:0,166,2135 0/0:191,0:191:99:0,527,6827 0/0:173,0:173:99:0,460,6043 0/0:173,0:174:99:0,460,6133 0/0:146,0:146:99:0,385,5086 0/0:147,0:147:99:0,415,5389 0/0:82,0:82:99:0,226,2828 0/0:79,0:79:99:0,214,2707 0/1:30,44:74:99:1206,0,859 0/0:66,0:66:99:0,175,2205 0/0:60,1:61:99:0,172,2129 0/0:67,0:67:99:0,190,2405 0/0:250,0:250:99:0,653,8370 0/0:58,0:58:99:0,166,2075 0/0:104,0:104:99:0,286,3597 0/0:75,0:75:99:0,208,2641 0/0:74,0:74:99:0,196,2492 0/0:101,0:103:99:0,280,3544 0/0:106,1:107:99:0,289,3712 0/0:43,0:43:99:0,126,1562 0/0:185,1:186:99:0,506,6590 0/0:150,0:150:99:0,385,5135 0/0:181,0:181:99:0,479,6293 0/0:160,0:160:99:0,406,5358 0/0:61,0:61:99:0,172,2173 0/0:86,0:86:99:0,235,2966 0/0:82,0:82:99:0,223,2811 0/0:65,0:65:99:0,178,2269 0/0:71,0:71:99:0,193,2477 0/0:93,0:93:99:0,244,3137 0/0:54,0:54:99:0,153,1920 0/0:69,0:69:99:0,199,2508 0/0:81,0:81:99:0,217,2764 0/0:65,0:65:99:0,187,2331 0/0:88,2:90:99:0,253,3171 0/0:93,0:93:99:0,241,3051 0/1:37,27:64:99:726,0,1139 0/0:91,1:92:99:0,244,3109 0/0:71,0:71:99:0,199,2493 0/0:94,1:95:99:0,245,3316 18 43565399 . C A 2448.65 . 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T C 5260.62 . 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C T 4165.75 . 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T C 4177.29 . 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G A 10560.79 . 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C T 4440.66 . 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C T 1705.27 . 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C T 1378.29 . 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G C 78.97 . 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T C 1436.68 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.162;DP=2397;Dels=0.00;FS=4.248;HRun=0;HaplotypeScore=1.1755;InbreedingCoeff=-0.0244;MQ=54.68;MQ0=15;MQRankSum=4.148;QD=16.71;ReadPosRankSum=0.555 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,117,1379 0/0:40,0:40:99:0,114,1370 0/0:33,0:33:96.29:0,96,1152 0/0:98,0:98:99:0,274,3315 0/0:77,0:77:99:0,220,2683 0/0:97,0:97:99:0,265,3349 0/0:76,0:76:99:0,220,2700 0/0:63,0:63:99:0,178,2138 0/0:49,0:49:99:0,132,1588 0/0:43,0:43:99:0,126,1498 0/0:47,0:47:99:0,129,1545 0/0:48,0:48:99:0,141,1676 0/0:49,0:49:99:0,132,1584 0/0:35,0:35:96.28:0,96,1155 0/0:160,0:160:99:0,421,5104 0/0:32,0:32:90.26:0,90,1079 0/0:40,0:40:99:0,120,1423 0/0:44,0:44:99:0,126,1521 0/0:66,0:66:99:0,199,2408 0/0:79,0:79:99:0,220,2687 0/0:54,0:54:99:0,147,1826 0/0:39,1:40:75.20:0,75,1241 0/0:99,0:99:99:0,286,3447 0/0:80,0:80:99:0,226,2797 0/0:84,0:84:99:0,226,2786 0/0:77,0:77:99:0,211,2599 0/1:18,17:35:99:478,0,550 0/1:17,34:51:99:1021,0,431 0/0:37,0:37:99:0,111,1341 0/0:42,0:42:99:0,120,1413 0/0:45,0:45:99:0,129,1549 0/0:60,0:60:99:0,156,1946 0/0:42,0:42:99:0,114,1370 0/0:43,0:43:99:0,120,1463 0/0:45,0:45:99:0,126,1504 0/0:49,0:49:99:0,141,1691 0/0:52,0:52:99:0,138,1689 0/0:59,0:59:99:0,162,1950 0/0:52,0:52:99:0,147,1789 0/0:40,0:40:99:0,111,1328 0/0:49,0:49:99:0,135,1615 0/0:47,0:47:99:0,135,1630 18 47363917 . A G 30.05 . AC=2;AF=0.024;AN=84;BaseQRankSum=11.201;DP=2674;Dels=0.00;FS=83.542;HRun=1;HaplotypeScore=1.5290;InbreedingCoeff=-0.0347;MQ=55.72;MQ0=4;MQRankSum=-15.115;QD=0.35;ReadPosRankSum=5.037 GT:AD:DP:GQ:PL 0/0:49,3:52:96.12:0,96,1639 0/0:54,2:56:99:0,104,1719 0/0:39,3:42:29.55:0,30,1201 0/0:107,3:110:99:0,195,3285 0/0:99,3:102:99:0,179,3112 0/0:78,2:80:99:0,144,2451 0/0:72,1:73:99:0,171,2345 0/0:70,1:71:99:0,171,2284 0/0:48,2:50:92:0,92,1527 0/0:57,2:59:92.46:0,92,1765 0/0:33,2:35:58.93:0,59,1126 0/0:45,1:47:99:0,102,1451 0/0:48,1:49:99:0,105,1506 0/0:52,0:52:99:0,141,1692 0/0:140,11:151:90.57:0,91,4046 0/0:47,2:49:84.63:0,85,1504 0/1:43,7:50:69.17:69,0,1267 0/0:34,3:37:14.55:0,15,1030 0/0:89,4:93:99:0,140,2638 0/0:93,2:95:99:0,198,3007 0/0:73,2:75:99:0,140,2222 0/0:48,2:50:82.99:0,83,1477 0/0:110,5:115:99:0,235,3563 0/0:83,1:84:99:0,187,2652 0/0:73,3:76:99:0,134,2345 0/0:58,0:58:99:0,150,1834 0/1:31,5:36:21.50:22,0,959 0/0:46,3:49:38.80:0,39,1442 0/0:36,1:37:71.57:0,72,1113 0/0:73,6:80:95.84:0,96,2286 0/0:45,6:51:1.05:6,0,1434 0/0:72,2:74:99:0,158,2335 0/0:53,2:55:86.86:0,87,1703 0/0:60,0:61:99:0,165,1964 0/0:46,2:48:89.01:0,89,1537 0/0:44,1:45:95.71:0,96,1441 0/0:79,3:82:99:0,133,2459 0/0:52,2:54:99:0,102,1715 0/0:41,2:43:56.53:0,57,1283 0/0:52,0:52:99:0,144,1721 0/0:46,2:48:85.06:0,85,1497 0/0:48,0:48:99:0,135,1607 18 47363930 . A G 174.22 . AC=4;AF=0.048;AN=84;BaseQRankSum=6.839;DP=2731;Dels=0.00;FS=95.515;HRun=1;HaplotypeScore=1.4710;InbreedingCoeff=-0.0596;MQ=55.63;MQ0=0;MQRankSum=-19.268;QD=0.56;ReadPosRankSum=2.307 GT:AD:DP:GQ:PL 0/0:44,3:47:54.47:0,54,1501 0/0:57,4:62:52.85:0,53,1821 0/1:37,5:42:32.71:33,0,1219 0/0:106,3:110:99:0,210,3547 0/0:93,4:98:99:0,168,3191 0/0:74,2:76:99:0,136,2521 0/0:73,1:74:99:0,168,2499 0/0:64,1:65:99:0,153,2212 0/0:48,3:51:52.01:0,52,1550 0/0:59,5:64:46.71:0,47,1846 0/0:38,4:42:21.87:0,22,1293 0/0:47,2:49:95.06:0,95,1654 0/0:45,2:47:80.05:0,80,1537 0/0:51,2:53:95.34:0,95,1791 0/1:143,17:160:14.64:15,0,4269 0/0:49,3:52:60.24:0,60,1605 0/1:48,11:59:99:132,0,1540 0/0:33,3:36:29.29:0,29,1105 0/0:96,8:104:12.07:0,12,2762 0/0:95,4:99:99:0,144,3112 0/0:71,4:77:99:0,119,2264 0/0:55,3:58:66.29:0,66,1747 0/0:106,5:111:99:0,212,3741 0/0:73,2:75:99:0,160,2575 0/0:72,3:75:99:0,134,2484 0/0:58,0:58:99:0,147,1919 0/0:40,5:45:1.63:3,0,1222 0/0:44,3:47:27.51:0,28,1356 0/0:40,1:41:83.63:0,84,1284 0/0:65,8:73:22.70:0,23,2074 0/1:43,8:51:79.28:79,0,1386 0/0:64,4:68:76.04:0,76,1991 0/0:59,3:62:75.91:0,76,2004 0/0:56,1:57:99:0,126,1908 0/0:49,5:54:30.09:0,30,1581 0/0:42,2:44:46.69:0,47,1316 0/0:81,7:88:61.33:0,61,2652 0/0:52,3:55:77.51:0,78,1765 0/0:55,3:58:67.79:0,68,1764 0/0:56,0:56:99:0,144,1824 0/0:40,3:43:50.38:0,50,1379 0/0:43,2:45:80.29:0,80,1543 18 47363931 . G C 237.17 . AC=4;AF=0.048;AN=84;BaseQRankSum=-2.764;DP=2725;Dels=0.00;FS=99.556;HRun=0;HaplotypeScore=1.4670;InbreedingCoeff=-0.0673;MQ=55.58;MQ0=0;MQRankSum=-19.895;QD=0.76;ReadPosRankSum=1.267 GT:AD:DP:GQ:PL 0/0:45,3:48:57.47:0,57,1535 0/0:59,4:63:59.65:0,60,1914 0/1:37,5:42:42.35:42,0,1228 0/0:107,4:111:99:0,177,3682 0/0:93,5:98:99:0,149,3283 0/0:75,2:77:99:0,152,2743 0/0:71,1:72:99:0,162,2495 0/0:62,1:63:99:0,144,2126 0/0:47,3:50:47.43:0,47,1516 0/0:57,5:62:40.70:0,41,1830 0/0:39,4:43:21.88:0,22,1311 0/0:48,2:50:98.05:0,98,1691 0/0:46,2:48:83.06:0,83,1598 0/0:50,2:52:92.37:0,92,1799 0/1:144,18:162:33.77:34,0,4429 0/0:48,3:51:57.23:0,57,1597 0/1:47,12:59:99:159,0,1499 0/0:32,4:36:1.42:4,0,1075 0/0:94,8:102:14.40:0,14,2807 0/0:97,5:102:99:0,131,3223 0/0:73,5:78:99:0,128,2384 0/0:55,4:59:39.87:0,40,1752 0/0:106,5:111:99:0,215,3933 0/0:72,3:75:99:0,138,2591 0/0:69,3:72:99:0,131,2534 0/0:60,1:61:99:0,153,2074 0/0:38,5:43:2.81:0,0,1267 0/0:43,3:46:25.28:0,25,1320 0/0:38,1:39:74.62:0,75,1209 0/0:66,8:74:22.73:0,23,2155 0/1:41,8:49:87.52:88,0,1329 0/0:65,4:69:82.07:0,82,2083 0/0:58,4:62:38.45:0,38,1946 0/0:55,2:57:99:0,104,1910 0/0:48,5:53:27.27:0,27,1625 0/0:41,2:43:45.11:0,45,1314 0/0:81,7:88:65.09:0,65,2690 0/0:51,3:54:77.51:0,78,1783 0/0:55,4:59:40.48:0,40,1751 0/0:55,0:55:99:0,147,1897 0/0:40,3:43:50.36:0,50,1390 0/0:42,2:44:77.29:0,77,1533 18 47363963 . T C 770.66 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.771;DP=2435;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8122;InbreedingCoeff=-0.0244;MQ=48.58;MQ0=94;MQRankSum=0.479;QD=9.29;ReadPosRankSum=-1.850 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,123,1458 0/0:49,0:49:99:0,141,1665 0/0:40,0:40:99:0,117,1377 0/0:87,0:87:99:0,256,2990 0/0:90,0:90:99:0,256,3022 0/0:64,0:65:99:0,172,2114 0/0:65,0:65:99:0,190,2299 0/0:45,0:45:99:0,129,1544 0/0:37,0:37:99:0,99,1160 0/0:50,0:50:99:0,138,1611 0/0:52,0:52:99:0,138,1605 0/0:51,0:51:99:0,132,1516 0/0:47,0:47:99:0,123,1456 0/0:44,0:44:99:0,111,1297 0/0:142,0:142:99:0,346,4163 0/0:40,0:40:99:0,111,1319 0/0:52,0:52:99:0,144,1713 0/0:39,0:39:93.20:0,93,1075 0/0:97,0:97:99:0,253,3042 0/0:101,0:102:99:0,262,3123 0/0:76,0:76:99:0,199,2338 0/0:54,0:54:99:0,150,1762 0/0:85,0:85:99:0,229,2774 0/0:52,0:52:99:0,144,1745 0/0:60,0:60:99:0,153,1867 0/0:59,0:59:99:0,150,1856 0/1:26,14:40:99:353,0,640 0/1:25,18:43:99:480,0,584 0/0:34,0:34:81.25:0,81,994 0/0:49,0:49:99:0,132,1542 0/0:47,0:47:99:0,123,1452 0/0:71,0:71:99:0,183,2114 0/0:65,1:66:99:0,141,2037 0/0:45,0:45:99:0,117,1398 0/0:55,0:55:99:0,144,1683 0/0:35,0:35:99:0,99,1156 0/0:76,0:76:99:0,192,2250 0/0:64,0:64:99:0,168,1998 0/0:49,0:49:99:0,135,1590 0/0:45,0:45:99:0,120,1443 0/0:38,0:38:99:0,99,1131 0/0:51,1:52:99:0,135,1572 18 47363977 . T C 501.42 . AC=1;AF=0.012;AN=84;BaseQRankSum=6.529;DP=2370;Dels=0.00;FS=4.794;HRun=0;HaplotypeScore=0.9103;InbreedingCoeff=-0.0120;MQ=43.25;MQ0=158;MQRankSum=0.164;QD=10.67;ReadPosRankSum=1.907 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,123,1425 0/0:52,0:52:99:0,147,1761 0/0:37,0:38:99:0,108,1299 0/0:81,0:81:99:0,244,2853 0/0:74,0:74:99:0,217,2544 0/0:68,0:69:99:0,187,2271 0/0:61,0:61:99:0,181,2194 0/1:28,19:47:99:548,0,745 0/0:37,0:37:99:0,99,1172 0/0:46,0:46:99:0,126,1467 0/0:52,0:52:99:0,138,1606 0/0:47,0:47:99:0,117,1343 0/0:48,0:48:99:0,123,1446 0/0:49,0:49:99:0,114,1323 0/0:140,0:141:99:0,343,4086 0/0:42,0:42:99:0,111,1289 0/0:48,0:48:99:0,135,1597 0/0:37,0:37:87.18:0,87,993 0/0:97,0:97:99:0,247,2971 0/0:95,0:95:99:0,235,2812 0/0:82,0:82:99:0,214,2501 0/0:46,0:46:99:0,123,1441 0/0:68,0:68:99:0,190,2298 0/0:50,0:50:99:0,141,1682 0/0:58,0:58:99:0,156,1886 0/0:59,0:59:99:0,153,1875 0/0:41,0:41:99:0,108,1256 0/0:40,0:40:99:0,102,1162 0/0:34,0:34:81.24:0,81,971 0/0:46,0:46:99:0,111,1332 0/0:44,0:44:99:0,120,1390 0/0:72,0:72:99:0,180,2086 0/0:63,0:63:99:0,172,2051 0/0:47,0:47:99:0,126,1442 0/0:52,0:52:99:0,138,1597 0/0:39,0:39:99:0,105,1215 0/0:84,0:84:99:0,199,2376 0/0:60,0:60:99:0,153,1771 0/0:53,0:53:99:0,138,1624 0/0:44,0:44:99:0,114,1366 0/0:33,0:33:84.20:0,84,957 0/0:46,0:47:99:0,123,1420 18 47404166 . G A 1545.95 . AC=1;AF=0.012;AN=84;BaseQRankSum=6.599;DP=3525;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.0503;InbreedingCoeff=-0.0120;MQ=59.56;MQ0=0;MQRankSum=-1.052;QD=12.37;ReadPosRankSum=0.939 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,165,1855 0/0:63,0:63:99:0,174,1938 0/0:51,0:51:99:0,150,1667 0/0:159,0:159:99:0,469,5627 0/0:160,0:161:99:0,451,5547 0/0:131,0:131:99:0,373,4504 0/0:121,0:121:99:0,355,4258 0/1:70,55:125:99:1592,0,1994 0/0:68,1:69:99:0,162,2141 0/0:62,0:62:99:0,186,2071 0/0:66,0:66:99:0,189,2110 0/0:63,0:63:99:0,186,2065 0/0:58,0:58:99:0,171,1876 0/0:64,0:64:99:0,193,2171 0/0:216,0:216:99:0,587,6659 0/0:46,0:46:99:0,132,1472 0/0:75,0:75:99:0,223,2458 0/0:59,0:59:99:0,171,1891 0/0:88,0:88:99:0,253,2868 0/0:90,0:90:99:0,256,2889 0/0:81,0:81:99:0,220,2567 0/0:63,0:63:99:0,180,1989 0/0:176,0:176:99:0,512,6307 0/0:139,0:139:99:0,400,4887 0/0:116,0:117:99:0,328,3992 0/0:110,0:110:99:0,322,3870 0/0:43,0:43:99:0,126,1439 0/0:71,0:71:99:0,189,2144 0/0:49,0:49:99:0,144,1585 0/0:78,0:78:99:0,220,2421 0/0:56,0:56:99:0,168,1880 0/0:78,0:78:99:0,223,2523 0/0:56,0:56:99:0,159,1804 0/0:68,0:68:99:0,196,2180 0/0:57,0:57:99:0,162,1866 0/0:67,0:67:99:0,202,2207 0/0:73,0:73:99:0,211,2361 0/0:70,0:70:99:0,198,2221 0/0:47,0:47:99:0,141,1548 0/0:67,0:67:99:0,193,2130 0/0:56,0:56:99:0,168,1853 0/0:78,0:78:99:0,214,2439 18 47463659 . T C 819.74 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.610;DP=4378;DS;Dels=0.00;FS=3.170;HRun=0;HaplotypeScore=2.3989;InbreedingCoeff=-0.0120;MQ=59.19;MQ0=0;MQRankSum=-0.344;QD=11.08;ReadPosRankSum=-0.538 GT:AD:DP:GQ:PL 0/0:85,0:85:99:0,235,2880 0/0:81,0:81:99:0,208,2539 0/0:85,0:85:99:0,226,2740 0/0:202,0:202:99:0,518,6452 0/0:166,0:166:99:0,430,5453 0/0:111,0:111:99:0,283,3634 0/0:94,0:95:99:0,247,3156 0/0:111,0:111:99:0,292,3672 0/0:76,0:76:99:0,196,2421 0/0:91,0:91:99:0,250,3034 0/0:66,0:66:99:0,181,2195 0/0:79,0:79:99:0,211,2610 0/1:38,36:74:99:866,0,1067 0/0:76,0:76:99:0,220,2668 0/0:225,0:225:99:0,560,6869 0/0:71,0:71:99:0,202,2451 0/0:102,0:102:99:0,277,3384 0/0:109,0:109:99:0,286,3520 0/0:145,0:146:99:0,385,4756 0/0:133,0:133:99:0,346,4301 0/0:146,0:146:99:0,367,4492 0/0:89,0:89:99:0,223,2787 0/0:201,0:201:99:0,503,6352 0/0:109,0:109:99:0,289,3594 0/0:113,0:113:99:0,274,3470 0/0:120,0:120:99:0,295,3767 0/0:66,0:66:99:0,178,2185 0/0:98,0:98:99:0,262,3230 0/0:75,0:75:99:0,199,2441 0/0:101,0:101:99:0,262,3232 0/0:72,0:72:99:0,202,2466 0/0:153,0:153:99:0,379,4743 0/0:102,0:102:99:0,265,3248 0/0:78,0:78:99:0,220,2690 0/0:83,0:83:99:0,232,2824 0/0:74,0:74:99:0,211,2565 0/0:124,0:124:99:0,301,3742 0/0:78,0:78:99:0,217,2601 0/0:75,0:75:99:0,211,2581 0/0:96,0:96:99:0,274,3348 0/0:72,0:72:99:0,181,2251 0/0:69,0:69:99:0,193,2355 18 47810351 . A G 98593.66 . 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C T 719.61 . 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G A 2605.35 . 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C T 26163.24 . 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G A 122391.75 . AC=39;AF=0.464;AN=84;BaseQRankSum=28.224;DP=8494;DS;Dels=0.00;FS=49.030;HRun=0;HaplotypeScore=4.9126;InbreedingCoeff=-0.2923;MQ=59.39;MQ0=0;MQRankSum=1.783;QD=18.30;ReadPosRankSum=0.698 GT:AD:DP:GQ:PL 0/1:102,84:186:99:2451,0,2740 0/1:90,106:196:99:3103,0,2332 0/1:83,57:140:99:1602,0,2270 0/0:249,0:250:99:0,695,8444 0/0:248,0:249:99:0,725,8690 0/1:126,113:240:99:3285,0,3794 0/0:224,1:226:99:0,586,7593 0/1:94,103:197:99:3062,0,2735 0/0:164,1:165:99:0,440,5343 0/1:87,81:168:99:2316,0,2260 0/0:176,1:177:99:0,460,5496 0/1:104,94:199:99:2806,0,2681 0/1:54,85:139:99:2642,0,1301 1/1:0,187:187:99:6526,536,0 1/1:0,250:250:99:8568,722,0 0/1:93,74:167:99:2085,0,2498 0/1:116,108:224:99:3145,0,3032 0/1:94,96:190:99:2858,0,2508 0/1:129,113:246:99:3073,0,3533 1/1:1,248:249:99:8765,722,0 1/1:0,249:250:99:8374,707,0 0/1:123,127:250:99:3693,0,3070 0/1:117,128:245:99:3784,0,3338 0/0:190,0:190:99:0,544,6416 0/1:115,95:211:99:2826,0,3341 0/1:127,96:224:99:2763,0,3729 0/1:70,66:136:99:1915,0,1808 0/1:108,92:200:99:2715,0,2826 0/1:94,90:184:99:2500,0,2496 1/1:0,183:183:99:6565,542,0 0/1:76,80:156:99:2355,0,1960 0/1:138,111:250:99:3133,0,3575 0/1:109,117:226:99:3421,0,2837 0/0:194,0:194:99:0,565,6250 0/1:85,92:177:99:2786,0,2118 0/0:190,0:190:99:0,541,6013 0/1:117,128:250:99:3709,0,2914 0/0:166,0:166:99:0,469,5273 1/1:1,202:203:99:7129,590,0 0/1:108,95:203:99:2739,0,2891 0/1:85,94:179:99:2831,0,2185 0/1:83,97:180:99:2866,0,2182 18 48333203 . C G 63003.24 . 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G A 5246.49 . AC=6;AF=0.071;AN=84;BaseQRankSum=-11.075;DP=4784;DS;Dels=0.00;FS=0.540;HRun=0;HaplotypeScore=3.1781;InbreedingCoeff=-0.0769;MQ=59.44;MQ0=0;MQRankSum=0.569;QD=12.64;ReadPosRankSum=-3.016 GT:AD:DP:GQ:PL 0/0:85,0:85:99:0,202,2578 0/0:87,0:87:99:0,223,2827 0/0:88,0:88:99:0,205,2605 0/0:240,1:241:99:0,575,7602 0/0:248,0:248:99:0,602,8069 0/0:218,0:220:99:0,554,7421 0/0:195,0:195:99:0,500,6661 0/0:163,0:163:99:0,421,5676 0/0:86,0:86:99:0,232,2906 0/0:92,0:92:99:0,241,2992 0/0:79,0:79:99:0,202,2572 0/0:96,0:96:99:0,238,3072 0/0:85,0:85:99:0,208,2667 0/0:68,0:68:99:0,184,2344 0/0:246,0:246:99:0,635,7830 0/0:71,0:72:99:0,199,2469 0/0:89,2:91:99:0,199,2979 0/0:75,0:75:99:0,199,2504 0/0:88,0:89:99:0,223,2708 0/0:109,0:110:99:0,259,3320 0/0:90,0:90:99:0,208,2628 0/0:57,0:57:99:0,141,1781 0/0:250,0:250:99:0,614,8168 0/0:211,0:211:99:0,506,6834 0/0:218,0:218:99:0,536,7269 0/0:193,0:193:99:0,457,6173 0/1:29,23:52:99:547,0,733 0/1:30,34:64:99:929,0,895 0/1:46,29:75:99:678,0,1304 0/1:32,34:66:99:915,0,943 0/1:27,44:71:99:1205,0,748 0/0:113,0:113:99:0,271,3552 0/0:70,0:70:99:0,159,2083 0/0:85,0:85:99:0,205,2600 0/0:71,0:71:99:0,184,2343 0/1:47,40:87:99:973,0,1311 0/0:74,0:75:99:0,202,2462 0/0:95,0:95:99:0,229,2916 0/0:84,0:84:99:0,223,2807 0/0:74,0:75:99:0,196,2469 0/0:64,2:66:99:0,108,2146 0/0:99,0:100:99:0,256,3253 18 48584519 . G C 215 . AC=9;AF=0.107;AN=84;BaseQRankSum=-20.846;DP=2430;Dels=0.00;FS=1269.794;HRun=1;HaplotypeScore=1.8354;InbreedingCoeff=-0.1465;MQ=58.90;MQ0=0;MQRankSum=-0.018;QD=0.50;ReadPosRankSum=-17.650 GT:AD:DP:GQ:PL 0/0:36,12:48:0.18:0,0,1055 0/0:47,2:49:99:0,123,1528 0/0:38,4:42:99:0,99,1204 0/0:72,20:92:79.22:0,79,2238 0/0:71,21:93:48.59:0,49,2281 0/0:72,21:94:71.95:0,72,2040 0/0:73,13:87:99:0,119,2134 0/0:54,17:71:62.46:0,62,1674 0/0:32,3:35:90.23:0,90,1060 0/0:41,4:46:82.98:0,83,1222 0/1:41,9:50:12.76:13,0,1159 0/0:43,6:49:60.43:0,60,1428 0/1:15,11:26:61.35:61,0,439 0/1:39,9:48:19.82:20,0,1073 0/0:136,31:167:85.36:0,85,3789 0/0:34,3:37:84.25:0,84,1034 0/1:26,10:36:52.07:52,0,722 0/0:46,1:47:83.62:0,84,1263 0/0:45,7:52:25.98:0,26,1258 0/0:68,9:77:99:0,129,2120 0/1:54,14:68:71.70:72,0,1285 0/0:36,8:44:4.67:0,5,1095 0/0:85,26:111:1.94:0,2,2625 0/0:64,6:70:99:0,165,2161 0/0:51,10:61:99:0,110,1686 0/0:51,6:57:60.44:0,60,1612 0/0:28,7:35:34.83:0,35,862 0/0:40,11:51:45.83:0,46,1108 0/0:32,7:39:58.56:0,59,978 0/0:43,5:48:95.46:0,95,1394 0/0:41,9:50:40.14:0,40,1283 0/0:40,7:48:54.79:0,55,1282 0/0:44,9:53:42.43:0,42,1362 0/0:45,7:52:93.75:0,94,1460 0/1:33,7:40:27.16:27,0,913 0/1:37,12:49:36.05:36,0,1078 0/1:46,13:59:10.39:10,0,1165 0/0:37,6:43:91.19:0,91,1123 0/0:44,8:52:95.05:0,95,1364 0/1:32,18:51:44.78:45,0,769 0/0:37,11:48:1.27:5,0,1183 0/0:44,11:55:35.31:0,35,1319 18 48584519 . G GC 374.83 . AC=13;AF=0.155;AN=84;BaseQRankSum=5.437;DP=2487;FS=2337.951;HRun=1;HaplotypeScore=159.9127;InbreedingCoeff=-0.2138;MQ=58.98;MQ0=0;MQRankSum=1.028;QD=0.59;ReadPosRankSum=-22.922 GT:AD:DP:GQ:PL 0/1:48,0:48:37.26:37,0,1174 0/1:40,12:52:41.71:42,0,1155 0/0:42,0:42:99:0,105,1246 0/0:95,0:94:89.79:0,90,2468 0/0:96,0:96:25.97:0,26,2215 0/0:92,0:91:0.78:0,1,2021 0/0:93,0:92:73.38:0,73,2289 0/0:72,0:71:27.72:0,28,1572 0/0:29,7:36:42.24:0,42,950 0/0:45,0:45:72.98:0,73,1378 0/0:52,1:53:1.88:3,0,1251 0/0:47,0:47:51.11:0,51,1380 0/1:26,0:26:64.52:65,0,476 0/1:49,0:49:16.85:17,0,1134 0/0:164,0:164:9.54:0,10,4306 0/1:32,8:40:51.69:52,0,908 0/1:39,0:39:82.92:83,0,723 0/0:40,13:53:2.80:0,0,1102 0/0:57,0:57:8.90:0,9,1477 0/0:78,0:78:99:0,112,2252 0/1:68,0:68:43.90:44,0,1583 0/0:47,0:47:15.29:0,15,1110 0/0:113,0:113:18.86:0,19,2715 0/0:71,0:71:99:0,155,2255 0/0:62,0:60:34.35:0,34,1545 0/0:58,0:58:77.93:0,78,1674 0/0:36,0:36:7.20:0,7,858 0/0:53,0:53:34.45:0,34,1224 0/0:39,0:39:23.45:0,23,1050 0/0:49,0:49:64.39:0,64,1491 0/0:52,0:52:10.91:0,11,1339 0/0:50,0:50:29.73:0,30,1343 0/0:54,0:54:61.88:0,62,1466 0/0:54,0:54:84.52:0,85,1567 0/1:40,0:40:19.26:19,0,956 0/1:51,0:51:23.77:24,0,1232 0/1:60,0:60:15.40:15,0,1337 0/0:43,0:43:37.19:0,37,1223 0/0:53,0:53:16.19:0,16,1439 0/1:54,0:54:90.22:90,0,933 0/1:49,0:49:32.31:32,0,1197 0/1:54,0:54:3.84:4,0,1295 18 50936994 . T C 68243.18 . AC=46;AF=0.548;AN=84;BaseQRankSum=37.692;DP=4193;DS;Dels=0.00;FS=11.125;HRun=2;HaplotypeScore=1.7106;InbreedingCoeff=0.1350;MQ=59.52;MQ0=0;MQRankSum=-0.895;QD=22.14;ReadPosRankSum=-2.202 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2505,196,0 1/1:0,84:84:99:2943,229,0 0/1:34,37:72:99:1098,0,936 0/0:145,0:145:99:0,406,4863 0/1:89,82:171:99:2679,0,2498 0/1:78,91:169:99:2877,0,2106 0/1:76,73:149:99:2392,0,2197 0/0:128,1:129:99:0,321,4289 1/1:0,65:65:99:2365,184,0 1/1:0,82:82:99:2890,223,0 1/1:0,74:74:99:2542,196,0 0/1:48,33:81:99:967,0,1350 0/0:70,0:70:99:0,190,2293 0/1:61,36:98:99:1085,0,1717 0/1:127,109:236:99:3215,0,3409 0/1:35,43:78:99:1233,0,945 1/1:0,92:92:99:3326,262,0 0/1:46,47:93:99:1357,0,1317 0/1:51,60:111:99:1816,0,1391 1/1:0,104:104:99:3495,268,0 0/0:128,0:128:99:0,337,4117 0/0:74,0:74:99:0,208,2483 0/1:78,80:158:99:2585,0,2193 0/0:123,0:124:99:0,334,4140 0/0:151,0:151:99:0,403,4972 0/1:67,64:131:99:1924,0,1859 0/1:31,26:57:99:794,0,867 1/1:0,77:77:99:2798,220,0 0/0:89,0:89:99:0,235,2859 1/1:0,60:60:99:1988,153,0 0/1:35,47:82:99:1503,0,1012 0/0:100,0:100:99:0,280,3394 1/1:0,82:82:99:2951,229,0 1/1:0,66:66:99:2379,187,0 1/1:3,69:72:99:2420,99,0 1/1:0,85:85:99:2950,229,0 0/0:100,0:100:99:0,274,3329 0/1:40,41:82:99:1169,0,1189 0/1:44,54:98:99:1563,0,1269 0/1:37,31:69:99:952,0,1056 0/1:33,38:71:99:1160,0,877 1/1:0,63:63:99:2321,181,0 18 51025796 . C T 1304.08 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.110;DP=5411;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.4374;InbreedingCoeff=-0.0120;MQ=59.55;MQ0=0;MQRankSum=0.817;QD=11.15;ReadPosRankSum=-0.654 GT:AD:DP:GQ:PL 0/0:99,0:99:99:0,271,3168 0/0:122,0:122:99:0,322,3854 0/0:114,0:114:99:0,313,3749 0/0:206,0:207:99:0,560,7199 0/0:195,1:196:99:0,533,6888 0/0:191,0:191:99:0,509,6542 0/0:180,0:181:99:0,472,6042 0/0:170,1:171:99:0,402,5591 0/0:104,0:104:99:0,289,3457 0/0:80,0:80:99:0,223,2668 0/0:104,0:104:99:0,283,3479 0/0:118,0:118:99:0,328,3896 0/0:91,0:91:99:0,241,2928 0/0:103,0:103:99:0,283,3420 0/0:248,0:250:99:0,668,7824 0/0:101,0:101:99:0,262,3145 0/0:104,2:106:99:0,244,3237 0/0:99,0:99:99:0,283,3264 0/0:173,0:173:99:0,472,5620 0/0:159,0:159:99:0,427,5217 0/0:171,0:171:99:0,460,5534 0/0:87,0:87:99:0,238,2848 0/0:245,0:245:99:0,650,8438 0/0:179,0:179:99:0,469,6085 0/0:150,0:150:99:0,400,5154 0/0:147,0:147:99:0,397,5140 0/0:82,0:82:99:0,235,2815 0/0:101,1:102:99:0,270,3378 0/0:87,0:87:99:0,247,2921 0/0:112,0:112:99:0,292,3525 0/0:80,0:80:99:0,229,2679 0/0:174,0:174:99:0,463,5542 0/1:68,49:117:99:1350,0,1841 0/0:102,0:102:99:0,277,3311 0/0:86,0:86:99:0,244,2880 0/0:100,1:101:99:0,244,3214 0/0:136,0:136:99:0,370,4372 0/0:104,0:104:99:0,283,3377 0/0:103,0:104:99:0,298,3461 0/0:97,0:97:99:0,292,3402 0/0:92,0:92:99:0,256,3045 0/0:87,0:87:99:0,244,2899 18 51809236 . G A 92.87 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.949;DP=451;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.1682;InbreedingCoeff=-0.0227;MQ=59.66;MQ0=0;MQRankSum=0.262;QD=15.48;ReadPosRankSum=0.573 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,76 0/0:6,0:6:18.06:0,18,223 0/0:7,0:7:18.06:0,18,224 0/0:18,0:19:48.16:0,48,641 0/0:19,0:19:51.16:0,51,676 0/0:6,0:6:18.06:0,18,231 0/0:19,0:19:42.14:0,42,581 0/0:6,0:6:18.06:0,18,242 0/0:13,0:13:33.10:0,33,423 0/0:8,0:8:21.07:0,21,272 0/0:4,0:4:12.04:0,12,147 0/0:7,0:7:21.07:0,21,265 0/0:11,0:11:27.08:0,27,334 0/0:11,0:11:30.10:0,30,393 0/0:46,0:47:99:0,120,1518 0/0:5,0:5:9.03:0,9,123 0/0:6,0:6:18.06:0,18,230 0/0:7,0:7:21.07:0,21,270 0/0:22,0:22:54.16:0,54,684 0/0:23,0:23:57.19:0,57,755 0/0:13,0:13:36.12:0,36,471 0/0:5,0:5:12.04:0,12,157 0/0:9,0:9:27.09:0,27,369 0/0:3,0:3:9.03:0,9,125 0/1:1,5:6:26.71:139,0,27 0/0:8,0:8:24.08:0,24,319 0/0:4,0:4:12.04:0,12,152 0/0:11,0:11:27.09:0,27,355 0/0:7,0:7:15.05:0,15,204 0/0:17,0:17:48.15:0,48,615 0/0:5,0:5:15.04:0,15,180 0/0:20,0:20:57.17:0,57,702 0/0:9,0:9:24.07:0,24,298 0/0:6,0:6:15.05:0,15,189 0/0:5,0:5:12.04:0,12,153 0/0:14,0:14:39.10:0,39,481 0/0:15,0:15:33.11:0,33,442 0/0:12,0:12:36.11:0,36,437 0/0:12,0:12:36.11:0,36,448 0/0:4,0:4:9.03:0,9,122 0/0:13,0:13:33.07:0,33,397 0/0:5,0:5:12.04:0,12,162 18 51809277 . T A 163.53 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.086;DP=614;Dels=0.00;FS=1.657;HRun=0;HaplotypeScore=0.3546;InbreedingCoeff=-0.0149;MQ=59.53;MQ0=0;MQRankSum=-0.541;QD=13.63;ReadPosRankSum=-1.533 GT:AD:DP:GQ:PL 0/0:6,0:6:18.06:0,18,217 0/0:10,0:10:27.08:0,27,330 0/0:11,0:11:30.09:0,30,374 0/0:27,0:27:75.23:0,75,909 0/0:22,0:22:66.21:0,66,832 0/0:11,0:11:30.09:0,30,379 0/0:17,0:17:48.15:0,48,616 0/0:19,0:19:48.11:0,48,586 0/0:16,0:16:39.12:0,39,488 0/0:7,0:7:15.05:0,15,192 0/0:9,0:9:27.08:0,27,328 0/0:10,0:10:30.09:0,30,367 0/0:13,0:13:39.12:0,39,473 0/0:17,0:17:45.14:0,45,572 0/0:59,0:59:99:0,144,1814 0/0:6,0:6:15.05:0,15,187 0/0:8,0:8:24.07:0,24,295 0/1:5,7:12:99:210,0,147 0/0:21,0:21:57.18:0,57,723 0/0:28,0:28:78.24:0,78,970 0/0:21,0:21:54.17:0,54,682 0/0:4,0:4:12.04:0,12,143 0/0:17,0:17:45.14:0,45,570 0/0:10,0:10:30.10:0,30,379 0/0:14,0:14:39.12:0,39,487 0/0:13,0:13:36.11:0,36,452 0/0:7,0:7:21.07:0,21,257 0/0:7,0:7:18.06:0,18,231 0/0:11,0:11:33.10:0,33,404 0/0:14,0:14:39.12:0,39,486 0/0:7,0:7:21.06:0,21,244 0/0:25,0:25:72.20:0,72,866 0/0:9,0:9:27.08:0,27,331 0/0:6,0:6:18.06:0,18,222 0/0:6,0:6:18.05:0,18,215 0/0:17,0:17:45.14:0,45,564 0/0:29,0:29:81.25:0,81,1008 0/0:22,0:22:63.20:0,63,771 0/0:10,0:10:24.07:0,24,298 0/0:6,0:6:18.05:0,18,216 0/0:16,0:16:45.14:0,45,547 0/0:14,0:14:42.13:0,42,519 18 51809364 . G C 378.62 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.133;DP=990;Dels=0.00;FS=0.946;HRun=0;HaplotypeScore=0.3141;InbreedingCoeff=-0.0258;MQ=59.28;MQ0=0;MQRankSum=0.801;QD=12.21;ReadPosRankSum=0.145 GT:AD:DP:GQ:PL 0/0:14,0:14:36.12:0,36,475 0/0:24,0:24:60.19:0,60,779 0/0:24,0:24:63.20:0,63,804 0/0:51,0:51:99:0,117,1622 0/0:34,0:34:93.31:0,93,1280 0/0:30,0:30:78.24:0,78,1061 0/0:26,0:26:75.24:0,75,1020 0/0:29,0:29:72.24:0,72,995 0/1:7,8:15:99:205,0,232 0/0:11,0:11:30.09:0,30,374 0/1:8,8:16:99:236,0,228 0/0:12,0:12:33.11:0,33,424 0/0:16,0:16:45.14:0,45,572 0/0:16,0:16:42.13:0,42,548 0/0:76,0:76:99:0,184,2420 0/0:13,0:13:36.12:0,36,459 0/0:3,0:3:9.03:0,9,116 0/0:21,0:21:57.19:0,57,746 0/0:31,0:31:75.24:0,75,996 0/0:43,0:43:99:0,99,1333 0/0:19,0:19:45.15:0,45,590 0/0:17,0:17:42.14:0,42,553 0/0:48,0:48:99:0,105,1493 0/0:29,0:29:69.23:0,69,958 0/0:26,0:26:72.24:0,72,1009 0/0:23,0:23:63.20:0,63,851 0/0:16,0:16:42.10:0,42,523 0/0:16,0:16:39.12:0,39,504 0/0:14,0:14:39.12:0,39,500 0/0:24,0:24:57.19:0,57,759 0/0:12,0:12:30.10:0,30,389 0/0:38,0:38:96.31:0,96,1271 0/0:20,0:20:51.16:0,51,664 0/0:14,0:14:39.12:0,39,501 0/0:17,0:17:45.15:0,45,585 0/0:18,0:19:51.16:0,51,653 0/0:39,0:39:96.27:0,96,1224 0/0:24,0:24:66.21:0,66,852 0/0:10,0:10:30.10:0,30,387 0/0:12,0:12:36.12:0,36,459 0/0:32,0:32:78.25:0,78,1025 0/0:16,0:16:48.15:0,48,613 18 52586545 . A G 3596.94 . AC=3;AF=0.036;AN=84;BaseQRankSum=-3.669;DP=4618;DS;Dels=0.00;FS=1.007;HRun=0;HaplotypeScore=1.9085;InbreedingCoeff=-0.0370;MQ=59.46;MQ0=0;MQRankSum=-0.175;QD=12.19;ReadPosRankSum=-0.544 GT:AD:DP:GQ:PL 0/0:88,0:88:99:0,235,2898 0/0:99,0:99:99:0,265,3245 0/0:94,0:94:99:0,232,2893 0/0:161,0:161:99:0,394,4975 0/0:148,0:148:99:0,382,4818 0/0:103,0:103:99:0,250,3226 0/0:112,0:112:99:0,280,3564 0/0:88,0:89:99:0,238,2946 0/1:63,49:112:99:1291,0,1740 0/0:112,1:113:99:0,285,3655 0/1:46,41:87:99:1110,0,1292 0/0:80,0:80:99:0,220,2688 0/0:80,0:80:99:0,211,2589 0/0:84,0:84:99:0,241,2891 0/0:249,0:249:99:0,647,7722 0/0:70,0:70:99:0,184,2236 0/0:113,0:113:99:0,301,3725 0/0:98,1:99:99:0,222,3134 0/0:135,0:135:99:0,349,4293 0/0:138,1:140:99:0,352,4348 0/0:129,0:129:99:0,352,4297 0/0:104,0:104:99:0,280,3387 0/0:159,0:159:99:0,391,4918 0/0:118,0:118:99:0,295,3731 0/0:114,0:114:99:0,286,3598 0/0:106,0:106:99:0,277,3461 0/0:68,0:68:99:0,193,2278 0/0:97,0:97:99:0,268,3226 0/0:79,0:79:99:0,214,2626 0/0:105,0:105:99:0,265,3293 0/0:84,0:84:99:0,232,2849 0/0:154,0:154:99:0,388,4823 0/0:117,0:117:99:0,301,3698 0/0:106,0:106:99:0,289,3515 0/1:50,46:96:99:1195,0,1416 0/0:109,0:109:99:0,289,3538 0/0:152,0:153:99:0,385,4760 0/0:102,1:103:99:0,265,3260 0/0:80,0:80:99:0,202,2514 0/0:103,0:103:99:0,286,3472 0/0:93,0:93:99:0,256,3118 0/0:85,0:85:99:0,229,2799 18 52609945 . C T 4655.57 . 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T C 1222.22 . AC=1;AF=0.012;AN=84;BaseQRankSum=9.554;DP=1670;Dels=0.00;FS=4.470;HRun=0;HaplotypeScore=0.5236;InbreedingCoeff=-0.0120;MQ=59.33;MQ0=0;MQRankSum=0.632;QD=18.24;ReadPosRankSum=-0.045 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,111,1326 0/0:31,0:31:84.25:0,84,1011 0/0:28,0:28:78.23:0,78,933 0/0:73,0:73:99:0,193,2327 0/0:72,0:72:99:0,187,2277 0/0:49,0:49:99:0,135,1672 0/0:57,0:57:99:0,150,1876 0/0:60,0:60:99:0,166,2011 0/0:34,0:34:96.27:0,96,1121 0/0:19,0:19:54.16:0,54,621 0/0:26,0:26:69.21:0,69,851 0/0:23,0:23:69.20:0,69,808 0/0:29,0:29:69.21:0,69,853 0/0:28,0:28:75.23:0,75,905 0/0:99,0:100:99:0,259,3026 0/0:33,0:33:96.28:0,96,1128 0/0:32,0:32:93.27:0,93,1093 0/0:27,0:27:78.23:0,78,916 0/0:43,0:43:99:0,102,1265 0/0:36,0:36:93.29:0,93,1143 0/0:41,0:42:99:0,114,1371 0/0:30,0:30:87.25:0,87,1014 0/1:29,38:67:99:1268,0,788 0/0:57,0:57:99:0,144,1788 0/0:71,0:71:99:0,187,2291 0/0:57,0:57:99:0,147,1818 0/0:23,0:23:63.19:0,63,745 0/0:40,1:41:99:0,111,1316 0/0:43,0:43:99:0,126,1468 0/0:38,0:38:99:0,102,1209 0/0:17,0:17:48.14:0,48,573 0/0:44,0:44:99:0,123,1477 0/0:27,0:27:72.19:0,72,850 0/0:34,0:34:93.28:0,93,1128 0/0:30,0:30:87.25:0,87,1020 0/0:33,0:33:90.26:0,90,1060 0/0:31,0:31:81.22:0,81,951 0/0:31,0:31:81.24:0,81,964 0/0:28,0:28:81.24:0,81,954 0/0:31,0:31:87.26:0,87,1045 0/0:19,0:19:54.13:0,54,632 0/0:35,0:35:93.27:0,93,1113 18 54339818 . C G 99427.04 . 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A C 216.49 . 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T C 104401.19 . AC=66;AF=0.786;AN=84;BaseQRankSum=-16.930;DP=4384;DS;Dels=0.00;FS=2.326;HRun=0;HaplotypeScore=2.1831;InbreedingCoeff=-0.2727;MQ=59.38;MQ0=0;MQRankSum=1.720;QD=23.81;ReadPosRankSum=-0.576 GT:AD:DP:GQ:PL 0/1:38,44:82:99:1074,0,1102 0/1:54,38:92:99:963,0,1578 0/1:39,43:83:99:1108,0,1184 1/1:0,164:165:99:5157,424,0 0/1:40,44:84:99:1215,0,1192 0/1:61,43:105:99:1178,0,1679 1/1:0,110:110:99:3695,304,0 0/1:49,51:101:99:1402,0,1400 1/1:0,74:74:99:2274,196,0 0/1:45,33:78:99:863,0,1287 1/1:1,110:111:99:3282,250,0 1/1:0,101:101:99:3263,295,0 1/1:0,79:79:99:2500,223,0 1/1:0,74:74:99:2352,205,0 1/1:0,225:225:99:6739,607,0 1/1:0,83:84:99:2618,223,0 1/1:0,101:101:99:3122,271,0 0/1:43,45:88:99:1120,0,1252 0/1:71,75:146:99:1838,0,2082 1/1:0,130:130:99:3932,343,0 1/1:0,134:134:99:3933,346,0 1/1:0,98:98:99:2932,256,0 1/1:0,145:146:99:4820,391,0 1/1:0,100:100:99:3168,262,0 0/1:48,58:106:99:1583,0,1282 1/1:0,96:97:99:2989,247,0 0/1:42,44:86:99:1186,0,1105 0/1:45,42:87:99:1133,0,1233 0/1:47,37:84:99:912,0,1299 0/1:44,38:82:99:1007,0,1268 0/1:52,45:97:99:1168,0,1445 1/1:0,157:157:99:4746,412,0 0/1:55,46:101:99:1070,0,1613 1/1:0,87:87:99:2738,241,0 0/1:47,57:104:99:1505,0,1338 1/1:0,105:105:99:3204,280,0 1/1:0,148:148:99:4390,388,0 0/1:56,35:91:99:813,0,1640 1/1:1,105:106:99:3291,259,0 1/1:0,81:81:99:2582,229,0 1/1:0,78:78:99:2457,220,0 1/1:1,95:96:99:3082,277,0 18 55247336 . C A 1782.94 . 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G A 6948.73 . 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A T 50.73 . 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C T 685.24 . 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C T 18158.88 . 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T A 3557.20 . 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G C 1952.78 . 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G GC 4314.04 . 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C T 6747.97 . 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T G 521.04 . 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C T 5797.15 . AC=15;AF=0.179;AN=84;BaseQRankSum=-17.509;DP=1528;Dels=0.00;FS=2.251;HRun=0;HaplotypeScore=1.5815;InbreedingCoeff=0.2696;MQ=58.97;MQ0=0;MQRankSum=-0.724;QD=14.46;ReadPosRankSum=0.222 GT:AD:DP:GQ:PL 1/1:0,19:19:54.15:621,54,0 1/1:0,28:28:66.20:805,66,0 0/1:10,6:16:99:163,0,311 0/0:101,0:101:99:0,256,3395 0/1:44,33:77:99:861,0,1395 0/0:65,0:65:99:0,166,2255 0/0:51,0:51:99:0,120,1616 0/0:51,0:51:99:0,123,1610 0/0:22,0:22:54.16:0,54,687 0/1:14,11:25:99:283,0,400 0/0:25,0:25:66.18:0,66,833 0/0:16,0:16:48.12:0,48,586 0/0:14,0:14:36.11:0,36,458 0/0:21,0:21:57.18:0,57,735 0/0:92,0:93:99:0,238,3028 0/0:35,0:35:93.30:0,93,1195 0/0:25,0:25:66.21:0,66,844 0/0:19,0:19:54.17:0,54,670 0/0:43,0:43:99:0,108,1364 0/0:47,0:47:99:0,123,1546 0/0:31,0:31:87.24:0,87,1083 0/0:30,0:30:75.24:0,75,953 0/1:57,34:91:99:790,0,1710 0/0:46,0:46:99:0,108,1474 0/0:65,0:65:99:0,159,2087 0/0:50,0:50:99:0,117,1567 0/1:9,6:15:99:170,0,263 1/1:0,25:25:72.20:822,72,0 0/0:25,0:25:69.21:0,69,876 0/0:35,0:35:96.28:0,96,1185 0/0:20,0:20:57.15:0,57,702 0/0:46,0:46:99:0,111,1473 0/0:20,0:20:48.15:0,48,620 0/1:17,7:24:99:165,0,488 0/0:23,0:23:66.20:0,66,819 0/1:15,16:31:99:411,0,447 0/0:35,0:35:84.24:0,84,1076 0/0:21,0:22:60.13:0,60,710 0/0:20,0:20:57.15:0,57,706 0/1:14,17:31:99:440,0,371 0/1:9,10:19:99:267,0,289 0/0:30,0:30:78.23:0,78,967 18 60209741 . T A 152.49 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.501;DP=569;Dels=0.00;FS=1.369;HRun=0;HaplotypeScore=0.1646;InbreedingCoeff=-0.0161;MQ=59.45;MQ0=0;MQRankSum=1.257;QD=6.10;ReadPosRankSum=-0.992 GT:AD:DP:GQ:PL 0/0:9,0:9:24.07:0,24,295 0/0:10,0:10:27.08:0,27,329 0/0:11,0:11:33.10:0,33,395 0/0:7,0:7:21.06:0,21,249 0/0:9,0:9:21.07:0,21,278 0/0:7,0:7:21.07:0,21,263 0/0:7,0:7:21.07:0,21,262 0/0:9,0:9:21.07:0,21,279 0/0:10,0:10:30.09:0,30,364 0/0:9,0:9:24.07:0,24,295 0/0:10,0:10:30.09:0,30,370 0/0:13,0:13:39.12:0,39,481 0/0:13,0:13:36.11:0,36,444 0/0:7,0:7:18.06:0,18,225 0/0:57,0:57:99:0,147,1829 0/0:5,0:5:15.05:0,15,184 0/0:12,0:12:33.10:0,33,413 0/0:14,0:14:36.11:0,36,461 0/0:22,0:22:60.17:0,60,730 0/0:19,0:19:51.16:0,51,635 0/0:21,0:21:54.17:0,54,683 0/0:16,0:16:45.14:0,45,555 0/0:11,0:11:27.09:0,27,351 0/0:2,0:2:6.02:0,6,77 0/0:8,0:8:21.07:0,21,270 0/0:8,0:8:24.08:0,24,299 0/0:8,0:8:21.07:0,21,263 0/0:22,0:22:57.17:0,57,710 0/0:14,0:14:39.12:0,39,488 0/0:20,0:20:54.17:0,54,676 0/0:14,0:14:39.12:0,39,488 0/0:25,0:25:63.20:0,63,798 0/1:16,9:25:99:199,0,495 0/0:14,0:14:33.10:0,33,426 0/0:10,0:10:27.09:0,27,343 0/0:14,0:14:36.11:0,36,451 0/0:20,0:20:54.17:0,54,680 0/0:14,0:14:36.11:0,36,451 0/0:8,0:8:21.06:0,21,261 0/0:14,0:14:36.11:0,36,457 0/0:8,0:8:24.07:0,24,293 0/0:13,0:13:36.11:0,36,442 18 61154277 . C A 637.29 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.305;DP=3183;DS;Dels=0.00;FS=0.788;HRun=2;HaplotypeScore=0.6906;InbreedingCoeff=-0.0120;MQ=59.51;MQ0=0;MQRankSum=1.212;QD=10.80;ReadPosRankSum=-2.307 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,169,2096 0/0:56,0:56:99:0,153,1963 0/0:58,0:58:99:0,166,2088 0/0:124,0:124:99:0,346,4603 0/0:131,0:131:99:0,346,4699 0/0:129,0:129:99:0,364,4872 0/0:116,0:116:99:0,313,4299 0/0:133,0:133:99:0,358,4835 0/0:72,0:72:99:0,196,2483 0/0:56,0:57:99:0,153,1957 0/0:60,0:60:99:0,163,2078 0/0:80,0:80:99:0,235,2923 0/0:63,0:63:99:0,169,2136 0/0:55,0:55:99:0,156,1972 0/0:207,0:207:99:0,566,7176 0/0:40,0:40:99:0,114,1449 0/0:62,0:62:99:0,163,2069 0/0:62,0:62:99:0,165,2083 0/0:72,0:72:99:0,208,2610 0/0:61,0:61:99:0,172,2186 0/0:68,0:68:99:0,187,2352 0/0:43,0:43:99:0,120,1523 0/0:137,0:137:99:0,370,5067 0/0:128,0:128:99:0,355,4855 0/0:114,0:114:99:0,322,4331 0/0:124,0:124:99:0,349,4727 0/0:45,0:45:99:0,126,1606 0/0:55,0:55:99:0,153,1927 0/0:50,0:50:99:0,147,1855 0/0:56,0:56:99:0,162,2028 0/0:41,0:41:99:0,111,1436 0/0:86,0:86:99:0,226,2891 0/0:40,0:40:99:0,108,1387 0/0:58,0:58:99:0,160,2032 0/0:41,0:41:99:0,114,1428 0/0:54,0:54:99:0,153,1968 0/0:53,0:53:99:0,147,1849 0/0:69,0:70:99:0,187,2351 0/0:57,0:57:99:0,166,2082 0/0:57,0:57:99:0,153,1953 0/0:50,0:50:99:0,138,1716 0/1:33,25:59:99:683,0,992 18 61160287 . T C 136453.28 . AC=59;AF=0.702;AN=84;BaseQRankSum=32.663;DP=5351;DS;Dels=0.00;FS=0.986;HRun=1;HaplotypeScore=1.4744;InbreedingCoeff=-0.1959;MQ=59.59;MQ0=0;MQRankSum=-0.503;QD=26.40;ReadPosRankSum=-1.540 GT:AD:DP:GQ:PL 0/1:46,63:109:99:1971,0,1284 0/1:55,62:117:99:1811,0,1619 0/0:92,1:93:99:0,234,3210 1/1:0,180:180:99:6841,521,0 1/1:1,201:202:99:7658,536,0 1/1:1,189:190:99:7253,542,0 1/1:1,200:201:99:7826,548,0 1/1:0,183:183:99:7136,536,0 0/1:54,60:114:99:1788,0,1558 0/1:43,43:86:99:1322,0,1259 0/1:51,42:93:99:1264,0,1527 1/1:0,97:97:99:3595,283,0 1/1:0,90:90:99:3322,265,0 1/1:0,103:103:99:3724,298,0 1/1:1,248:249:99:8369,654,0 1/1:0,92:92:99:3381,271,0 0/1:48,54:102:99:1579,0,1412 0/1:45,61:106:99:1927,0,1271 0/1:69,66:135:99:1914,0,2088 1/1:0,159:159:99:5605,442,0 0/1:65,64:129:99:1943,0,1824 1/1:0,90:91:99:3263,259,0 0/1:87,107:194:99:3543,0,2521 0/1:101,103:204:99:3394,0,2918 1/1:1,192:194:99:7580,563,0 0/1:86,110:196:99:3631,0,2456 1/1:0,70:71:99:2583,205,0 1/1:0,95:95:99:3347,271,0 1/1:0,100:100:99:3646,292,0 0/1:62,46:108:99:1271,0,1870 1/1:1,101:102:99:3762,298,0 0/1:54,73:127:99:2271,0,1484 0/1:46,50:96:99:1589,0,1288 0/1:49,41:90:99:1241,0,1510 0/0:90,0:90:99:0,265,3247 1/1:1,98:99:99:3471,245,0 0/1:67,64:132:99:1850,0,1928 1/1:0,93:93:99:3318,262,0 0/1:56,54:110:99:1652,0,1654 0/1:60,55:115:99:1669,0,1826 0/1:54,63:117:99:1878,0,1604 0/1:52,45:97:99:1267,0,1583 18 61160320 . G C 25065.51 . AC=13;AF=0.155;AN=84;BaseQRankSum=16.233;DP=4460;DS;Dels=0.00;FS=17.759;HRun=0;HaplotypeScore=2.0158;InbreedingCoeff=0.3629;MQ=59.52;MQ0=0;MQRankSum=-0.819;QD=24.84;ReadPosRankSum=0.222 GT:AD:DP:GQ:PL 0/1:43,49:92:99:1510,0,1262 0/1:40,46:86:99:1422,0,1115 0/0:71,0:71:99:0,208,2617 0/0:182,0:182:99:0,494,6595 0/0:187,0:187:99:0,521,7032 1/1:0,155:155:99:6113,445,0 1/1:1,118:119:99:4517,302,0 1/1:0,136:136:99:5232,388,0 0/0:97,0:97:99:0,271,3394 0/0:64,0:64:99:0,178,2235 0/0:81,0:82:99:0,226,2822 0/0:97,0:97:99:0,262,3288 0/0:75,0:75:99:0,214,2588 0/1:36,51:87:99:1536,0,1035 0/0:248,0:248:99:0,701,8694 0/0:73,0:73:99:0,220,2674 0/0:90,0:90:99:0,247,3107 0/1:42,45:87:99:1372,0,1190 0/0:131,0:131:99:0,364,4525 0/0:123,0:123:99:0,331,4162 0/0:134,0:136:99:0,358,4427 0/0:69,0:69:99:0,190,2341 0/0:192,1:193:99:0,490,7092 0/0:150,1:151:99:0,421,5662 0/0:148,0:148:99:0,421,5706 0/0:133,0:133:99:0,373,5054 0/0:46,0:46:99:0,129,1592 0/0:85,0:85:99:0,241,2975 0/0:75,0:75:99:0,208,2582 0/0:100,0:100:99:0,274,3396 0/0:85,0:85:99:0,247,3087 0/0:111,0:112:99:0,298,3778 0/1:52,36:88:99:1056,0,1540 0/1:41,28:69:99:801,0,1292 0/0:82,0:83:99:0,223,2799 0/1:41,49:90:99:1506,0,1245 0/0:98,0:98:99:0,277,3407 0/0:66,0:66:99:0,193,2390 0/0:91,0:91:99:0,256,3167 0/0:79,0:79:99:0,223,2711 0/0:109,0:109:99:0,316,3877 0/0:72,0:72:99:0,214,2614 18 61310738 . T C 5410.43 . AC=2;AF=0.024;AN=84;BaseQRankSum=21.007;DP=7149;DS;Dels=0.00;FS=2.908;HRun=0;HaplotypeScore=2.0323;InbreedingCoeff=-0.0244;MQ=35.04;MQ0=1089;MQRankSum=-0.597;QD=10.82;ReadPosRankSum=1.650 GT:AD:DP:GQ:PL 0/0:153,0:154:99:0,355,3924 0/0:137,0:137:99:0,313,3429 0/0:122,0:122:99:0,295,3115 0/0:248,2:250:99:0,574,6558 0/0:249,0:250:99:0,586,6451 0/1:131,119:250:99:2861,0,2379 0/0:250,0:250:99:0,535,5911 0/1:141,109:250:99:2549,0,2872 0/0:141,0:141:99:0,331,3533 0/0:119,0:119:99:0,289,3131 0/0:131,0:131:99:0,271,2943 0/0:134,0:134:99:0,283,3073 0/0:112,0:112:99:0,255,2710 0/0:118,0:119:99:0,271,2911 0/0:247,0:247:99:0,574,6253 0/0:121,0:121:99:0,268,2842 0/0:161,0:161:99:0,346,3798 0/0:152,0:152:99:0,334,3681 0/0:189,0:189:99:0,433,4737 0/0:197,0:197:99:0,454,5088 0/0:206,0:207:99:0,451,5004 0/0:117,0:117:99:0,265,2956 0/0:250,0:250:99:0,595,6555 0/0:250,0:250:99:0,559,6258 0/0:248,0:249:99:0,511,5574 0/0:246,0:248:99:0,523,5728 0/0:106,0:106:99:0,241,2630 0/0:153,0:154:99:0,334,3627 0/0:145,0:145:99:0,343,3653 0/0:136,0:136:99:0,307,3369 0/0:131,0:131:99:0,283,3123 0/0:168,0:169:99:0,376,4194 0/0:125,0:125:99:0,283,3077 0/0:173,0:173:99:0,376,4091 0/0:137,0:137:99:0,310,3351 0/0:160,0:160:99:0,322,3445 0/0:171,0:171:99:0,391,4284 0/0:151,0:151:99:0,319,3440 0/0:161,0:161:99:0,358,3829 0/0:155,0:155:99:0,343,3683 0/0:124,0:125:99:0,271,2877 0/0:143,0:143:99:0,328,3519 18 61379838 . T G 21761.13 . AC=23;AF=0.274;AN=84;BaseQRankSum=-16.743;DP=2802;Dels=0.00;FS=10.261;HRun=0;HaplotypeScore=0.9717;InbreedingCoeff=0.2217;MQ=59.53;MQ0=0;MQRankSum=-0.992;QD=19.57;ReadPosRankSum=0.144 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,156,1900 0/1:23,21:45:99:559,0,718 1/1:0,44:44:99:1425,126,0 0/0:101,0:101:99:0,298,3685 0/0:114,0:114:99:0,316,3989 0/0:109,0:109:99:0,319,4054 0/1:26,44:70:99:1322,0,784 0/0:78,0:78:99:0,229,2826 0/1:33,26:59:99:698,0,962 0/1:26,16:42:99:379,0,773 0/1:15,23:38:99:622,0,413 0/0:50,0:50:99:0,147,1822 0/1:17,18:35:99:499,0,514 0/0:47,0:47:99:0,132,1629 0/0:155,0:155:99:0,445,5445 0/0:37,0:37:99:0,108,1302 0/0:60,0:60:99:0,175,2143 0/0:45,0:45:99:0,135,1682 0/0:96,0:96:99:0,277,3395 0/1:54,41:95:99:1051,0,1569 0/0:97,0:97:99:0,286,3565 0/0:75,0:75:99:0,208,2595 0/1:56,49:105:99:1383,0,1700 1/1:0,86:86:99:3024,250,0 1/1:0,92:93:99:3112,262,0 1/1:0,73:73:99:2551,211,0 0/0:37,0:37:99:0,111,1367 0/0:65,0:65:99:0,193,2322 0/0:52,1:53:99:0,126,1830 0/1:15,25:40:99:623,0,429 0/0:44,0:44:99:0,126,1521 0/0:88,0:88:99:0,226,2805 1/1:0,60:60:99:1861,168,0 0/0:65,0:65:99:0,184,2236 0/0:45,0:45:99:0,132,1614 0/1:31,24:55:99:654,0,911 0/1:44,36:80:99:905,0,1344 0/0:72,0:72:99:0,211,2579 0/1:31,20:51:99:502,0,923 0/0:48,0:48:99:0,138,1659 0/1:19,22:41:99:591,0,543 0/0:56,0:56:99:0,165,2025 18 61584726 . G T 203.52 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.784;DP=1027;Dels=0.00;FS=2.852;HRun=1;HaplotypeScore=0.4532;InbreedingCoeff=-0.0134;MQ=59.08;MQ0=0;MQRankSum=0.964;QD=11.97;ReadPosRankSum=-0.340 GT:AD:DP:GQ:PL 0/0:31,0:31:72.23:0,72,960 0/0:21,0:21:51.16:0,51,661 0/0:24,0:24:63.20:0,63,820 0/1:8,9:17:99:250,0,246 0/0:15,0:15:39.13:0,39,535 0/0:15,0:15:39.13:0,39,534 0/0:9,0:9:21.07:0,21,299 0/0:10,0:10:21.07:0,21,295 0/0:17,0:17:39.10:0,39,492 0/0:25,0:25:63.20:0,63,818 0/0:31,0:31:87.28:0,87,1102 0/0:17,1:18:26.46:0,26,584 0/0:26,0:26:69.22:0,69,890 0/0:19,0:19:48.15:0,48,607 0/0:89,0:89:99:0,214,2817 0/0:8,0:8:21.05:0,21,258 0/0:31,0:31:78.25:0,78,1016 0/0:28,0:28:75.24:0,75,974 0/0:44,0:44:99:0,102,1371 0/0:30,0:30:81.25:0,81,1031 0/0:32,0:32:78.25:0,78,1024 0/0:35,0:35:90.29:0,90,1186 0/0:20,1:21:10.80:0,11,570 0/0:13,0:13:33.11:0,33,453 0/0:13,0:13:27.09:0,27,381 0/0:14,0:14:30.09:0,30,414 0/0:13,0:13:30.10:0,30,401 0/0:25,0:25:69.22:0,69,882 0/0:19,0:19:51.16:0,51,661 0/0:21,0:21:54.17:0,54,703 0/0:27,0:27:78.25:0,78,998 0/0:49,0:49:99:0,108,1456 0/0:20,0:20:54.17:0,54,696 0/0:22,0:22:54.18:0,54,716 0/0:29,0:29:75.24:0,75,986 0/0:27,0:27:72.23:0,72,947 0/0:33,0:33:84.27:0,84,1085 0/0:19,0:19:51.16:0,51,658 0/0:13,0:13:36.12:0,36,466 0/0:24,0:24:54.17:0,54,709 0/0:23,0:23:63.19:0,63,802 0/0:27,0:27:72.23:0,72,943 18 61645544 . T C 2667.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.566;DP=3226;Dels=0.00;FS=7.363;HRun=0;HaplotypeScore=1.1931;InbreedingCoeff=-0.0244;MQ=59.24;MQ0=0;MQRankSum=0.913;QD=10.98;ReadPosRankSum=0.796 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,141,1683 0/0:63,0:63:99:0,169,2059 0/0:59,0:59:99:0,171,2026 0/0:175,0:175:99:0,439,5528 0/0:123,0:123:99:0,331,4183 0/0:108,0:108:99:0,289,3646 0/0:123,0:123:99:0,325,4123 0/0:107,0:107:99:0,274,3466 0/0:59,0:59:99:0,172,2049 0/0:40,0:40:99:0,105,1295 0/0:73,0:73:99:0,199,2407 0/0:60,0:60:99:0,166,2029 0/0:41,0:41:99:0,108,1331 0/0:55,0:55:99:0,150,1859 0/1:100,78:178:99:2083,0,2717 0/0:35,0:35:99:0,105,1255 0/1:39,26:65:99:648,0,1040 0/0:71,0:71:99:0,196,2370 0/0:92,0:92:99:0,235,2913 0/0:86,0:86:99:0,232,2839 0/0:79,0:79:99:0,208,2555 0/0:56,0:56:99:0,156,1880 0/0:150,0:150:99:0,388,4846 0/0:112,0:112:99:0,292,3705 0/0:145,0:145:99:0,379,4732 0/0:110,0:110:99:0,292,3641 0/0:51,0:51:99:0,135,1684 0/0:64,0:64:99:0,184,2211 0/0:55,0:55:99:0,153,1868 0/0:46,0:47:99:0,126,1531 0/0:50,0:50:99:0,144,1729 0/0:71,0:71:99:0,193,2383 0/0:55,0:55:99:0,147,1801 0/0:48,0:48:99:0,138,1674 0/0:74,0:74:99:0,187,2351 0/0:49,1:50:99:0,138,1662 0/0:78,0:78:99:0,217,2629 0/0:49,0:49:99:0,132,1605 0/0:52,0:52:99:0,141,1731 0/0:59,0:59:99:0,159,1939 0/0:52,0:52:99:0,144,1728 0/0:57,0:57:99:0,159,1896 18 61650865 . G A 28713.42 . AC=22;AF=0.262;AN=84;BaseQRankSum=-28.145;DP=4897;DS;Dels=0.00;FS=4.164;HRun=0;HaplotypeScore=1.8191;InbreedingCoeff=0.1378;MQ=59.55;MQ0=0;MQRankSum=-0.010;QD=17.51;ReadPosRankSum=0.794 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2567,214,0 0/1:35,44:81:99:1316,0,995 0/0:92,0:92:99:0,256,3223 0/0:216,0:216:99:0,578,7711 0/0:229,0:229:99:0,626,8477 0/0:223,0:223:99:0,614,8222 0/0:184,2:186:99:0,443,6835 0/0:191,1:192:99:0,490,6978 0/0:106,0:106:99:0,301,3808 0/0:76,0:76:99:0,220,2767 0/0:77,1:78:99:0,189,2787 0/1:43,22:65:99:599,0,1314 0/1:32,27:59:99:698,0,1022 0/0:105,0:107:99:0,277,3559 0/0:247,0:247:99:0,656,8354 0/1:34,21:55:99:525,0,1063 0/0:87,0:87:99:0,241,3082 1/1:1,79:80:99:2598,183,0 1/1:0,106:106:99:3580,292,0 0/1:57,57:114:99:1623,0,1624 0/1:55,45:100:99:1262,0,1655 0/1:32,43:75:99:1218,0,913 0/0:247,0:247:99:0,674,9083 0/0:182,0:182:99:0,500,6710 0/0:180,0:180:99:0,476,6414 0/1:96,82:178:99:2078,0,3028 0/1:43,29:72:99:861,0,1323 0/0:80,0:80:99:0,226,2832 0/1:31,46:77:99:1390,0,907 0/0:77,0:77:99:0,220,2779 0/1:40,27:67:99:715,0,1281 0/1:82,73:155:99:1996,0,2307 0/0:78,0:78:99:0,211,2664 0/0:98,1:99:99:0,241,3462 0/1:48,40:88:99:1102,0,1388 0/0:116,0:116:99:0,325,4119 0/1:50,39:89:99:1000,0,1471 0/0:94,0:94:99:0,265,3298 1/1:0,105:105:99:3584,298,0 0/0:95,0:95:99:0,271,3418 0/0:78,2:80:99:0,155,2741 0/0:89,1:90:99:0,256,3223 18 63511176 . T C 33169.05 . AC=21;AF=0.250;AN=84;BaseQRankSum=-7.238;DP=5135;DS;Dels=0.00;FS=11.154;HRun=0;HaplotypeScore=2.4622;InbreedingCoeff=0.0476;MQ=59.57;MQ0=0;MQRankSum=-0.665;QD=15.54;ReadPosRankSum=-3.652 GT:AD:DP:GQ:PL 0/1:57,43:100:99:1076,0,1516 0/1:46,44:90:99:1132,0,1293 0/0:89,0:89:99:0,241,2895 0/1:106,109:215:99:3015,0,2868 0/0:215,0:215:99:0,572,7062 0/0:191,0:191:99:0,509,6384 0/0:160,0:160:99:0,436,5355 0/0:164,1:166:99:0,424,5235 1/1:1,94:95:99:2884,250,0 0/1:35,32:67:99:820,0,1013 1/1:0,90:90:99:2851,247,0 0/1:35,48:83:99:1281,0,934 0/0:89,0:89:99:0,226,2735 1/1:1,90:91:99:2935,234,0 0/0:247,0:250:99:0,686,8125 0/0:84,0:84:99:0,235,2808 0/1:53,34:87:99:732,0,1527 0/1:39,51:90:99:1368,0,1107 0/1:73,70:147:99:1695,0,1872 0/1:67,75:142:99:2021,0,1736 0/0:142,0:143:99:0,355,4316 0/0:87,0:87:99:0,241,2875 0/1:119,102:222:99:2901,0,3071 0/1:69,79:148:99:2463,0,1712 0/0:201,0:202:99:0,524,6514 0/1:78,61:140:99:1715,0,2172 0/0:92,0:92:99:0,265,3141 0/1:59,51:110:99:1349,0,1522 0/0:76,0:76:99:0,208,2499 0/0:88,0:88:99:0,238,2879 0/0:89,0:89:99:0,244,2960 0/0:145,0:145:99:0,403,4892 0/0:90,0:90:99:0,241,2903 0/0:96,1:97:99:0,280,3315 0/0:115,0:115:99:0,325,3906 0/1:45,65:110:99:1725,0,1203 0/0:134,0:134:99:0,352,4249 0/0:105,0:105:99:0,295,3545 0/1:60,48:108:99:1206,0,1720 0/0:100,0:100:99:0,271,3284 0/0:96,3:99:99:0,176,3120 0/0:94,0:94:99:0,262,3176 18 64221671 . T TG 450.24 . AC=13;AF=0.155;AN=84;BaseQRankSum=-1.897;DP=3818;FS=1359.764;HRun=2;HaplotypeScore=221.3944;InbreedingCoeff=-0.1986;MQ=59.23;MQ0=0;MQRankSum=0.891;QD=0.37;ReadPosRankSum=-16.725 GT:AD:DP:GQ:PL 0/1:57,26:83:47.75:48,0,1115 0/0:55,22:77:7.50:0,7,1140 0/0:67,0:67:5.65:0,6,1197 0/0:130,2:131:60.95:0,61,2146 0/0:118,0:118:19.77:0,20,1746 0/0:142,0:140:99:0,157,2526 0/0:99,0:99:65.47:0,65,1649 0/0:123,0:120:99:0,109,1825 0/1:65,1:66:26.44:26,0,983 0/0:45,18:63:43.59:0,44,1159 0/1:64,20:84:32.81:33,0,1302 0/1:85,0:85:19.61:20,0,1255 0/0:66,0:66:38.69:0,39,1141 0/1:76,0:76:71.08:71,0,1285 0/1:245,0:245:13.73:14,0,3811 0/1:39,0:39:20.68:21,0,498 0/0:70,0:70:10.70:0,11,1174 0/1:95,0:95:55.93:56,0,1449 0/1:86,30:116:99:100,0,1759 0/0:99,0:99:52.58:0,53,1687 0/0:115,0:115:52.08:0,52,1555 0/0:89,0:89:51.20:0,51,1426 0/0:125,2:127:17.62:0,18,1996 0/0:125,0:125:99:0,134,2042 0/0:125,0:124:99:0,99,2262 0/0:94,0:92:90.96:0,91,1395 0/0:50,0:50:12.53:0,13,757 0/0:79,0:79:46.70:0,47,1431 0/0:64,0:63:18.55:0,19,1129 0/0:55,0:55:24.57:0,25,923 0/0:74,0:74:2.40:1,0,1186 0/0:102,0:102:49.09:0,49,1577 0/0:55,0:55:36.52:0,37,955 0/1:74,0:74:84.72:85,0,917 0/0:65,0:65:25.67:0,26,1038 0/0:75,0:75:32.54:0,33,1104 0/1:92,0:92:97.92:98,0,1362 0/0:76,0:76:77.57:0,78,1340 0/1:82,0:82:25.16:25,0,1342 0/0:71,0:71:47.15:0,47,1200 0/1:91,1:92:7.56:8,0,1330 0/0:92,0:92:18.41:0,18,1402 18 64221674 . C G 295.64 . AC=8;AF=0.095;AN=84;BaseQRankSum=-20.171;DP=3546;Dels=0.00;FS=987.682;HRun=2;HaplotypeScore=2.4439;InbreedingCoeff=-0.1193;MQ=59.38;MQ0=0;MQRankSum=-0.489;QD=0.49;ReadPosRankSum=-16.973 GT:AD:DP:GQ:PL 0/0:54,8:62:99:0,111,1374 0/0:49,8:57:99:0,126,1508 0/0:40,23:63:1.05:0,1,1250 0/0:77,52:129:91.48:0,91,2549 0/0:61,57:118:11.35:0,11,2121 0/0:83,57:141:99:0,180,2524 0/0:65,37:102:53.10:0,53,1971 0/0:74,43:117:98.50:0,99,2227 0/1:40,24:64:13.18:13,0,1095 0/0:45,5:50:74.87:0,75,1272 0/0:56,9:66:99:0,129,1591 0/0:48,33:81:65.56:0,66,1409 0/0:40,25:65:23.80:0,24,1220 0/1:42,27:69:57.47:57,0,1201 0/0:139,93:232:47.47:0,47,3946 0/1:17,15:32:60.36:60,0,469 0/0:40,26:66:10.84:0,11,1213 0/1:52,40:92:46.38:46,0,1415 0/0:65,13:79:99:0,162,1884 0/0:68,33:101:99:0,129,1825 0/0:60,42:102:25.06:0,25,1660 0/0:58,28:86:55.56:0,56,1565 0/1:67,56:123:11.09:11,0,2039 0/0:66,50:116:99:0,144,2213 0/0:81,39:120:97.43:0,97,2546 0/0:51,40:91:99:0,100,1606 0/0:29,19:48:15.30:0,15,864 0/0:49,26:75:58.25:0,58,1470 0/0:38,20:58:31.50:0,31,1148 0/0:38,15:53:17.34:0,17,1057 0/0:45,26:71:1.63:0,2,1346 0/0:61,36:97:52.63:0,53,1660 0/0:32,23:55:59.82:0,60,967 0/1:43,26:70:99:104,0,1132 0/0:40,22:62:40.91:0,41,1038 0/0:38,32:70:37.31:0,37,1141 0/1:49,30:79:72.95:73,0,1320 0/0:50,26:76:72.71:0,73,1570 0/1:46,30:76:47.91:48,0,1330 0/0:40,26:66:17.32:0,17,1235 0/0:50,31:81:30.48:0,30,1505 0/0:57,28:85:22.58:0,23,1546 18 64221688 . G A 1020.10 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.698;DP=2836;Dels=0.00;FS=3.091;HRun=0;HaplotypeScore=1.0990;InbreedingCoeff=-0.0244;MQ=59.14;MQ0=0;MQRankSum=3.249;QD=11.21;ReadPosRankSum=-0.799 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,175,2163 0/0:56,0:57:99:0,166,2022 0/0:46,0:46:99:0,135,1659 0/0:100,0:100:99:0,286,3799 0/0:88,0:88:99:0,244,3286 0/0:102,0:102:99:0,283,3785 0/0:79,0:79:99:0,211,2808 0/0:83,0:83:99:0,241,3195 0/0:45,0:45:99:0,132,1637 0/0:53,0:53:99:0,144,1811 0/0:57,0:57:99:0,153,1875 0/0:61,0:61:99:0,169,2073 0/0:55,0:55:99:0,150,1843 0/0:55,0:55:99:0,159,1985 0/0:183,0:183:99:0,518,6414 0/0:27,0:27:72.19:0,72,852 0/0:53,0:53:99:0,153,1884 0/0:70,0:70:99:0,196,2387 0/0:85,0:85:99:0,241,2853 0/0:82,0:82:99:0,229,2812 0/0:84,0:84:99:0,235,2849 0/0:70,0:70:99:0,196,2403 0/0:84,0:84:99:0,235,3176 0/0:88,0:88:99:0,235,3161 0/0:95,0:95:99:0,271,3653 0/0:72,0:72:99:0,199,2650 0/0:40,0:40:99:0,108,1325 0/0:58,0:58:99:0,165,1987 0/0:55,0:55:99:0,156,1929 0/1:28,20:48:99:528,0,853 0/0:51,0:51:99:0,147,1817 0/0:74,2:76:99:0,175,2540 0/1:22,21:43:99:555,0,599 0/0:53,0:53:99:0,144,1767 0/0:44,0:44:99:0,114,1384 0/0:64,0:64:99:0,187,2328 0/0:57,0:57:99:0,162,1927 0/0:70,0:70:99:0,193,2366 0/0:58,0:58:99:0,166,2054 0/0:60,0:60:99:0,175,2137 0/0:53,0:53:99:0,150,1854 0/0:68,0:68:99:0,187,2313 18 64221751 . A G 1641.76 . AC=2;AF=0.024;AN=84;BaseQRankSum=10.070;DP=3523;DS;Dels=0.00;FS=1.226;HRun=0;HaplotypeScore=1.4786;InbreedingCoeff=-0.0244;MQ=59.06;MQ0=0;MQRankSum=3.846;QD=14.03;ReadPosRankSum=-0.012 GT:AD:DP:GQ:PL 0/0:81,0:81:99:0,232,2788 0/0:68,0:68:99:0,199,2384 0/0:48,0:48:99:0,135,1655 0/0:127,0:127:99:0,349,4236 0/0:127,0:127:99:0,340,4294 0/0:127,0:127:99:0,340,4390 0/0:95,0:95:99:0,262,3322 0/0:115,0:115:99:0,316,3925 0/0:69,0:69:99:0,181,2218 0/0:48,0:48:99:0,126,1527 0/0:51,0:51:99:0,147,1767 0/0:72,0:72:99:0,202,2438 0/0:58,0:58:99:0,162,1975 0/0:61,0:61:99:0,175,2093 0/0:214,0:214:99:0,581,7087 0/0:46,0:46:99:0,132,1581 0/0:75,0:75:99:0,205,2503 0/0:72,0:72:99:0,214,2564 0/0:95,0:95:99:0,262,3183 0/0:97,0:97:99:0,265,3244 0/0:114,0:114:99:0,310,3810 0/0:79,0:79:99:0,208,2574 0/0:120,0:120:99:0,316,3929 0/0:121,0:121:99:0,316,3991 0/0:111,0:111:99:0,301,3785 0/0:97,0:97:99:0,262,3268 0/0:50,0:50:99:0,144,1727 0/0:69,0:69:99:0,190,2297 0/0:65,0:65:99:0,178,2173 0/1:32,27:59:99:776,0,954 0/0:63,0:63:99:0,184,2215 0/0:102,0:102:99:0,277,3436 0/1:28,30:58:99:928,0,730 0/0:60,0:60:99:0,175,2114 0/0:67,0:67:99:0,187,2252 0/0:102,0:102:99:0,286,3468 0/0:66,0:66:99:0,193,2321 0/0:81,0:81:99:0,217,2622 0/0:72,0:72:99:0,211,2509 0/0:71,0:71:99:0,202,2463 0/0:77,0:77:99:0,220,2640 0/0:73,0:73:99:0,214,2578 18 64239369 . T C 1645.35 . 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C T 2940.55 . 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C T 1296.30 . 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C A 437.10 . 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T C 2532.06 . 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T C 24323.60 . 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C T 2595.14 . 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C T 355.17 . 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G A 1222.62 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.348;DP=3099;DS;Dels=0.00;FS=2.765;HRun=0;HaplotypeScore=2.0139;InbreedingCoeff=-0.0370;MQ=58.90;MQ0=0;MQRankSum=2.640;QD=12.35;ReadPosRankSum=1.119 GT:AD:DP:GQ:PL 0/0:43,0:44:99:0,114,1351 0/0:40,1:41:69.17:0,69,1164 0/1:16,16:32:99:470,0,438 0/0:193,0:193:99:0,518,6639 0/0:181,0:181:99:0,472,6127 0/0:131,0:131:99:0,349,4493 0/0:105,0:105:99:0,295,3682 0/0:125,1:126:99:0,299,4213 0/0:50,0:50:99:0,126,1525 0/0:26,0:26:78.22:0,78,899 0/0:36,0:36:99:0,102,1145 0/0:42,0:42:99:0,114,1270 0/0:36,0:36:99:0,105,1221 0/0:41,0:41:99:0,114,1292 0/0:150,0:150:99:0,391,4532 0/0:42,0:43:99:0,111,1294 0/0:45,0:45:99:0,129,1454 0/0:46,0:46:99:0,129,1465 0/0:128,0:129:99:0,325,3802 0/0:122,0:122:99:0,316,3765 0/0:128,0:130:99:0,334,3837 0/0:65,1:66:99:0,138,1916 0/0:169,0:169:99:0,451,5843 0/0:87,0:87:99:0,241,3078 0/0:98,0:98:99:0,262,3393 0/0:101,0:102:99:0,277,3517 0/0:31,0:31:87.20:0,87,985 0/0:35,0:36:99:0,99,1138 0/0:38,0:38:99:0,99,1153 0/0:51,0:51:99:0,126,1510 0/0:37,0:37:99:0,102,1210 0/0:118,0:118:99:0,319,3771 0/0:86,0:86:99:0,229,2650 0/1:17,14:31:99:415,0,438 0/1:20,16:36:99:414,0,574 0/0:38,0:38:99:0,108,1244 0/0:104,0:104:99:0,277,3254 0/0:40,0:40:99:0,108,1261 0/0:49,0:51:99:0,126,1475 0/0:39,0:39:99:0,111,1308 0/0:34,0:34:96.26:0,96,1123 0/0:58,0:58:99:0,168,1936 19 425182 . G A 1268.79 . AC=3;AF=0.036;AN=84;BaseQRankSum=-3.566;DP=1070;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.1286;InbreedingCoeff=-0.0372;MQ=59.25;MQ0=0;MQRankSum=-0.862;QD=11.64;ReadPosRankSum=-0.503 GT:AD:DP:GQ:PL 0/0:21,0:21:54.15:0,54,635 0/0:16,0:16:48.10:0,48,524 0/0:14,0:14:39.10:0,39,457 0/0:78,0:78:99:0,220,2744 0/0:67,0:67:99:0,187,2322 0/0:34,0:34:96.27:0,96,1188 0/0:38,0:38:99:0,114,1428 0/0:41,0:41:99:0,105,1341 0/0:18,0:18:48.14:0,48,579 0/0:12,0:13:36.11:0,36,438 0/0:22,0:22:66.19:0,66,780 0/0:19,0:19:54.11:0,54,615 0/0:10,0:10:27.07:0,27,307 0/0:20,0:20:57.15:0,57,663 0/0:49,0:49:99:0,117,1442 0/0:20,0:20:54.13:0,54,614 0/0:18,0:18:45.12:0,45,541 0/0:18,0:19:54.16:0,54,649 0/0:17,0:17:51.13:0,51,599 0/1:11,15:26:99:425,0,279 0/0:25,0:25:63.16:0,63,732 0/0:38,0:39:99:0,102,1194 0/0:75,0:75:99:0,214,2681 0/1:16,17:33:99:370,0,475 0/1:30,19:50:99:549,0,754 0/0:21,0:21:60.15:0,60,723 0/0:10,0:11:24.05:0,24,277 0/0:16,0:16:45.13:0,45,523 0/0:17,0:17:51.15:0,51,609 0/0:16,0:16:48.14:0,48,568 0/0:10,0:11:30.06:0,30,345 0/0:25,0:27:63.19:0,63,785 0/0:27,0:27:69.18:0,69,811 0/0:13,0:13:36.11:0,36,447 0/0:11,0:11:33.09:0,33,385 0/0:16,0:16:45.14:0,45,552 0/0:23,0:23:63.17:0,63,734 0/0:23,0:23:66.18:0,66,777 0/0:18,0:18:48.14:0,48,579 0/0:13,0:13:39.10:0,39,452 0/0:12,0:12:30.09:0,30,362 0/0:13,0:13:36.11:0,36,426 19 496532 . G A 983.88 . AC=9;AF=0.107;AN=84;BaseQRankSum=-7.377;DP=556;Dels=0.00;FS=3.055;HRun=0;HaplotypeScore=0.3883;InbreedingCoeff=-0.1218;MQ=59.16;MQ0=0;MQRankSum=0.972;QD=9.74;ReadPosRankSum=1.610 GT:AD:DP:GQ:PL 0/0:9,0:9:21.07:0,21,272 0/0:11,0:11:27.08:0,27,333 0/0:11,0:11:30.09:0,30,367 0/0:27,0:27:63.21:0,63,856 0/0:43,0:43:99:0,108,1406 0/0:15,1:16:15.65:0,16,557 0/0:11,0:11:27.09:0,27,365 0/1:9,4:13:93.70:94,0,231 0/0:18,0:18:45.13:0,45,564 0/0:8,1:9:5.39:0,5,274 0/1:3,3:6:52.18:90,0,52 0/0:11,0:11:24.07:0,24,299 0/0:11,0:11:30.09:0,30,374 0/0:6,0:6:15.04:0,15,178 0/0:30,0:30:72.23:0,72,924 0/0:9,0:10:27.08:0,27,333 0/0:4,0:5:12.03:0,12,141 0/0:12,0:12:24.07:0,24,292 0/1:9,10:19:99:262,0,191 0/1:7,3:10:57.13:57,0,165 0/0:17,0:17:39.12:0,39,486 0/0:10,0:10:27.09:0,27,349 0/0:42,0:42:99:0,108,1475 0/0:13,0:13:36.10:0,36,471 0/0:28,0:28:63.20:0,63,831 0/0:10,0:10:27.07:0,27,343 0/0:7,0:7:18.05:0,18,224 0/0:3,0:3:9.02:0,9,101 0/0:7,0:7:18.06:0,18,234 0/0:6,0:6:12.02:0,12,140 0/0:9,0:9:18.04:0,18,208 0/1:10,4:14:88.68:89,0,251 0/0:14,0:14:36.12:0,36,474 0/1:3,2:5:54.56:55,0,99 0/0:8,0:8:21.07:0,21,261 0/1:1,9:10:14.52:206,0,15 0/1:7,5:12:90.26:90,0,167 0/0:6,0:6:18.03:0,18,213 0/1:5,7:12:99:169,0,126 0/0:7,0:7:21.07:0,21,263 0/0:13,0:13:33.11:0,33,429 0/0:15,0:15:36.09:0,36,444 19 547313 . G A 526.36 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.436;DP=3038;Dels=0.00;FS=0.803;HRun=0;HaplotypeScore=3.3646;InbreedingCoeff=-0.0120;MQ=58.89;MQ0=0;MQRankSum=0.380;QD=10.32;ReadPosRankSum=-1.767 GT:AD:DP:GQ:PL 0/0:36,0:36:81.22:0,81,940 0/0:39,0:39:99:0,99,1173 0/0:53,0:53:99:0,132,1517 0/0:228,0:228:99:0,575,7077 0/0:182,0:182:99:0,472,5781 0/0:124,0:124:99:0,313,3910 0/0:109,0:109:99:0,271,3494 0/0:114,0:114:99:0,301,3595 0/0:35,0:35:93.27:0,93,1123 0/0:30,0:30:90.17:0,90,990 0/0:24,0:24:69.18:0,69,783 0/0:40,0:40:99:0,108,1233 0/0:33,0:34:87.23:0,87,1016 0/0:50,0:50:99:0,129,1557 0/0:176,0:177:99:0,433,4985 0/0:40,0:41:99:0,114,1273 0/0:35,0:35:93.25:0,93,1066 0/0:28,0:28:78.21:0,78,905 0/0:76,0:76:99:0,183,2014 0/0:112,0:114:99:0,295,3481 0/0:75,0:76:99:0,208,2351 0/0:64,0:64:99:0,171,1937 0/0:217,0:217:99:0,545,6723 0/0:98,0:98:99:0,256,3125 0/0:132,0:132:99:0,328,4124 0/0:112,0:112:99:0,265,3329 0/0:44,0:44:99:0,111,1298 0/0:40,0:40:96.26:0,96,1101 0/0:40,0:40:99:0,102,1237 0/0:38,0:38:99:0,102,1111 0/1:29,22:51:99:573,0,717 0/0:86,0:86:99:0,226,2609 0/0:62,0:62:99:0,165,1871 0/0:44,0:44:99:0,117,1346 0/0:33,0:33:96.23:0,96,1080 0/0:45,0:45:99:0,117,1328 0/0:70,0:72:99:0,183,2064 0/0:43,0:43:99:0,114,1307 0/0:43,0:43:99:0,114,1294 0/0:53,1:55:99:0,117,1565 0/0:36,0:36:99:0,102,1155 0/0:38,0:38:99:0,99,1213 19 548562 . T G 200.04 . AC=5;AF=0.060;AN=84;BaseQRankSum=-19.881;DP=2008;Dels=0.00;FS=34.127;HRun=2;HaplotypeScore=1.8017;InbreedingCoeff=-0.0912;MQ=58.31;MQ0=0;MQRankSum=-0.807;QD=0.62;ReadPosRankSum=-6.961 GT:AD:DP:GQ:PL 0/0:22,11:33:51.10:0,51,547 0/0:34,8:43:63.70:0,64,975 0/0:28,7:35:66.13:0,66,719 0/0:53,25:78:99:0,104,1398 0/0:67,24:93:99:0,134,1879 0/0:41,11:52:99:0,111,1189 0/0:45,9:54:99:0,120,1245 0/0:41,16:59:34.22:0,34,1025 0/0:31,8:39:44.73:0,45,773 0/0:24,12:36:3.78:0,4,483 0/0:20,11:31:48.05:0,48,491 0/0:20,8:28:57.09:0,57,578 0/1:16,7:24:12.18:12,0,374 0/0:32,9:43:53.50:0,54,844 0/1:75,44:120:61.49:61,0,1766 0/0:23,12:35:63.14:0,63,676 0/0:28,11:39:48.47:0,48,726 0/0:19,6:25:48.11:0,48,508 0/1:40,26:67:56.37:56,0,1070 0/0:63,16:79:99:0,148,1802 0/1:35,26:61:99:145,0,859 0/0:48,10:58:99:0,107,1309 0/0:88,38:127:99:0,183,2321 0/0:26,9:35:69.12:0,69,734 0/0:44,14:58:99:0,114,1200 0/0:27,12:39:78.17:0,78,829 0/0:25,6:31:60.09:0,60,652 0/0:16,9:26:0.33:11,0,395 0/0:28,11:39:47.52:0,48,758 0/0:27,9:36:59.49:0,59,815 0/0:22,6:28:66.15:0,66,712 0/0:69,7:77:99:0,183,2054 0/0:34,8:42:64.58:0,65,914 0/0:32,7:39:62.53:0,63,910 0/0:26,10:37:49.41:0,49,730 0/0:22,12:35:1.58:4,0,580 0/1:32,18:50:12.20:12,0,714 0/0:22,10:32:57.11:0,57,587 0/0:19,8:28:25.37:0,25,458 0/0:28,18:46:6.54:0,7,640 0/0:23,7:30:14.95:0,15,624 0/0:32,9:41:70.54:0,71,994 19 548612 . G A 1508.46 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.809;DP=3934;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.6170;InbreedingCoeff=-0.0244;MQ=58.71;MQ0=0;MQRankSum=0.648;QD=11.01;ReadPosRankSum=-0.261 GT:AD:DP:GQ:PL 0/0:64,0:65:99:0,162,2024 0/0:67,0:67:99:0,187,2264 0/0:56,0:57:99:0,147,1825 0/0:189,0:189:99:0,485,6373 0/0:164,0:165:99:0,442,5788 0/0:103,0:103:99:0,274,3585 0/0:122,0:122:99:0,319,4110 0/0:125,0:125:99:0,301,3910 0/0:71,0:71:99:0,181,2213 0/0:60,0:60:99:0,144,1776 0/0:76,0:77:99:0,181,2243 0/0:58,0:58:99:0,153,1899 0/0:52,0:52:99:0,138,1726 0/0:71,0:71:99:0,187,2287 0/0:219,0:221:99:0,545,6657 0/0:87,0:87:99:0,232,2829 0/0:73,0:73:99:0,190,2344 0/0:50,0:50:99:0,135,1643 0/0:119,0:121:99:0,319,3785 0/0:160,0:160:99:0,406,5090 0/0:131,0:131:99:0,337,4111 0/0:84,0:84:99:0,202,2601 0/0:226,0:226:99:0,584,7452 0/0:86,0:86:99:0,199,2631 0/0:123,0:124:99:0,316,4173 0/0:112,0:112:99:0,268,3547 0/0:67,0:68:99:0,174,2155 0/0:57,0:58:99:0,150,1852 0/0:68,0:68:99:0,184,2306 0/0:65,0:65:99:0,165,2023 0/0:65,0:65:99:0,178,2207 0/0:150,0:150:99:0,370,4750 0/0:79,0:79:99:0,199,2459 0/0:55,0:55:99:0,150,1826 0/0:71,0:71:99:0,193,2374 0/0:67,0:67:99:0,177,2157 0/0:113,0:114:99:0,289,3521 0/0:68,0:68:99:0,186,2211 0/0:54,0:54:99:0,126,1575 0/1:36,28:64:99:689,0,981 0/0:58,0:58:99:0,144,1810 0/1:36,35:73:99:882,0,986 19 549041 . C T 277.43 . AC=3;AF=0.036;AN=84;BaseQRankSum=3.262;DP=279;Dels=0.00;FS=3.303;HRun=0;HaplotypeScore=0.2480;InbreedingCoeff=-0.0527;MQ=58.76;MQ0=0;MQRankSum=0.018;QD=18.50;ReadPosRankSum=0.870 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,167 0/0:3,0:3:9.02:0,9,99 0/0:6,0:6:18.03:0,18,194 0/0:21,0:21:63.18:0,63,740 0/0:15,0:15:39.11:0,39,473 0/0:15,0:15:39.10:0,39,445 0/0:8,0:8:24.07:0,24,296 0/0:7,0:7:18.06:0,18,218 0/0:3,0:3:9.02:0,9,102 0/1:2,4:6:45.04:127,0,45 0/0:2,0:2:6.01:0,6,63 0/0:10,0:10:27.05:0,27,279 0/0:7,0:7:21.03:0,21,216 0/0:2,0:2:6.01:0,6,58 0/0:14,0:14:39.09:0,39,420 0/0:6,0:6:18.02:0,18,180 0/0:8,0:8:24.06:0,24,263 0/0:2,0:2:6.01:0,6,60 0/0:6,0:6:12.04:0,12,144 0/0:12,0:12:33.05:0,33,340 0/0:9,0:9:24.06:0,24,269 0/0:4,0:4:12.03:0,12,133 0/0:9,0:9:24.07:0,24,277 0/0:8,0:8:24.06:0,24,270 0/0:9,0:9:27.08:0,27,319 0/0:8,0:8:21.05:0,21,233 0/1:1,3:4:23.22:95,0,23 0/0:2,0:2:3.01:0,3,39 0/1:1,4:5:14.58:130,0,15 0/0:8,0:8:24.06:0,24,260 0/0:4,0:4:12.02:0,12,129 0/0:6,0:6:15.04:0,15,177 0/0:7,0:7:21.06:0,21,241 0/0:2,0:2:6.02:0,6,67 0/0:2,0:2:6.01:0,6,63 0/0:4,0:4:12.03:0,12,139 0/0:4,0:4:12.02:0,12,119 0/0:5,0:5:15.04:0,15,162 0/0:9,0:9:27.06:0,27,285 0/0:4,0:4:12.01:0,12,113 0/0:2,0:2:6.02:0,6,64 0/0:6,0:6:18.05:0,18,196 19 549076 . T A 11.61 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.016;DP=232;Dels=0.00;FS=3.027;HRun=0;HaplotypeScore=0.1947;InbreedingCoeff=-0.0486;MQ=58.62;MQ0=0;MQRankSum=0.005;QD=1.94;ReadPosRankSum=-0.831 GT:AD:DP:GQ:PL 0/0:6,0:6:12.04:0,12,149 0/0:1,0:1:3.01:0,3,36 0/0:2,0:2:6.01:0,6,65 0/0:17,0:17:51.14:0,51,599 0/0:9,0:9:24.08:0,24,304 0/0:10,0:10:30.09:0,30,374 0/0:5,0:5:15.05:0,15,187 0/0:7,0:7:21.06:0,21,258 0/0:2,0:2:6.02:0,6,68 0/0:4,0:4:12.04:0,12,144 0/0:5,0:5:12.04:0,12,142 0/0:5,0:5:15.05:0,15,182 0/0:7,0:7:18.05:0,18,205 0/0:6,0:6:18.06:0,18,221 0/0:10,0:10:27.08:0,27,326 0/0:5,0:5:15.05:0,15,184 0/0:6,0:6:18.05:0,18,211 0/0:3,0:3:9.02:0,9,104 0/1:4,2:6:57.10:57,0,91 0/0:10,0:10:30.09:0,30,362 0/0:8,0:8:24.08:0,24,298 0/0:3,0:3:9.02:0,9,104 0/0:6,0:6:15.04:0,15,173 0/0:5,0:5:15.05:0,15,187 0/0:5,0:5:15.04:0,15,174 0/0:6,0:6:15.04:0,15,181 0/0:6,0:6:18.06:0,18,221 0/0:4,0:4:9.03:0,9,106 0/0:4,0:4:12.04:0,12,150 0/0:6,0:6:18.06:0,18,223 0/0:4,0:4:9.02:0,9,100 0/0:10,0:11:27.08:0,27,330 0/0:6,0:6:15.02:0,15,153 0/0:4,0:4:12.03:0,12,134 0/0:3,0:3:9.03:0,9,113 0/0:3,0:3:9.03:0,9,115 0/0:7,0:7:21.06:0,21,252 0/0:4,0:4:12.04:0,12,145 0/0:6,0:6:15.04:0,15,177 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.03:0,9,106 19 549080 . A G 171.23 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.123;DP=233;Dels=0.00;FS=1.466;HRun=1;HaplotypeScore=0.3576;InbreedingCoeff=0.2794;MQ=58.73;MQ0=0;MQRankSum=0.186;QD=15.57;ReadPosRankSum=-0.198 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,186 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.02:0,6,69 0/0:16,0:16:48.15:0,48,602 0/0:8,0:8:21.07:0,21,271 0/0:9,0:9:27.08:0,27,332 0/0:6,0:6:15.05:0,15,192 0/0:6,0:6:12.04:0,12,153 0/0:2,0:2:6:0,6,61 0/0:4,0:4:12.02:0,12,138 0/0:4,0:4:12.04:0,12,149 0/0:5,0:5:15.05:0,15,186 0/0:7,0:7:21.03:0,21,230 0/0:6,0:6:18.05:0,18,208 0/0:11,0:11:30.09:0,30,360 0/0:5,0:5:15.04:0,15,177 0/0:6,0:6:18.06:0,18,223 0/0:3,0:3:9.02:0,9,104 0/0:6,0:6:15.05:0,15,179 0/0:10,0:10:30.09:0,30,358 0/0:8,0:8:24.08:0,24,303 0/0:3,0:3:9.03:0,9,103 0/0:6,0:6:15.05:0,15,189 0/0:5,0:5:15.05:0,15,200 0/0:5,0:5:15.05:0,15,193 0/0:6,0:6:18.05:0,18,217 0/0:6,0:6:15.05:0,15,191 0/0:4,0:4:9.03:0,9,119 0/0:5,0:5:15.05:0,15,183 0/0:6,0:6:15.05:0,15,189 0/0:4,0:4:9.02:0,9,108 0/0:12,0:12:33.10:0,33,406 0/0:7,0:7:18.05:0,18,207 0/0:3,0:3:9.03:0,9,101 0/0:3,0:3:9.03:0,9,112 0/0:4,0:4:12.03:0,12,140 0/1:4,3:7:92.17:92,0,128 0/1:0,4:4:0.26:152,12,0 0/0:7,0:7:21.05:0,21,241 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,37 0/0:4,0:4:12.04:0,12,144 19 549129 . C A 3.90 . AC=1;AF=0.012;AN=82;BaseQRankSum=-1.703;DP=212;Dels=0.00;FS=2.942;HRun=0;HaplotypeScore=0.5323;InbreedingCoeff=-0.0643;MQ=58.43;MQ0=0;MQRankSum=0.605;QD=0.28;ReadPosRankSum=0.831 GT:AD:DP:GQ:PL 0/0:6,0:6:18.05:0,18,216 0/0:4,0:4:9.02:0,9,103 0/0:3,0:3:9.03:0,9,112 0/0:11,0:11:30.09:0,30,385 0/0:6,0:6:15.05:0,15,192 0/0:8,0:8:18.06:0,18,240 0/0:6,0:6:15.05:0,15,201 0/0:5,0:5:12.03:0,12,150 0/0:1,0:1:3.01:0,3,39 0/0:5,0:5:15.05:0,15,188 0/0:3,0:3:6.02:0,6,75 0/0:8,0:8:24.08:0,24,301 0/0:3,0:3:9.03:0,9,108 0/0:7,0:7:21.06:0,21,257 0/0:14,0:14:39.10:0,39,449 0/0:4,0:4:6.02:0,6,74 0/0:1,0:1:3.01:0,3,39 0/0:5,0:5:9.03:0,9,119 0/1:11,3:14:47.18:47,0,251 0/0:12,0:12:24.08:0,24,320 0/0:5,0:5:12.03:0,12,143 0/0:4,0:4:12.04:0,12,152 0/0:4,0:4:12.03:0,12,141 0/0:2,0:2:6.02:0,6,78 0/0:3,0:3:9.03:0,9,121 0/0:3,0:3:9.03:0,9,124 0/0:4,0:4:12.02:0,12,140 0/0:4,0:4:9.03:0,9,121 0/0:5,0:5:12.04:0,12,155 0/0:5,0:6:15.05:0,15,183 0/0:3,0:3:9.03:0,9,116 0/0:12,0:12:30.09:0,30,366 0/0:6,0:6:15.05:0,15,184 0/0:5,0:5:15.05:0,15,188 0/0:4,0:4:9.03:0,9,121 0/0:5,0:5:9.03:0,9,121 0/0:3,0:3:9.03:0,9,111 0/0:3,0:3:9.03:0,9,104 0/0:3,0:3:9.03:0,9,114 0/0:1,0:1:3.01:0,3,38 ./. 0/0:1,0:1:3.01:0,3,38 19 605093 . G A 1459.16 . AC=3;AF=0.036;AN=84;BaseQRankSum=3.709;DP=2507;Dels=0.00;FS=9.960;HRun=0;HaplotypeScore=1.8927;InbreedingCoeff=-0.0370;MQ=57.95;MQ0=1;MQRankSum=0.484;QD=10.28;ReadPosRankSum=0.634 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,138,1559 0/0:53,0:53:99:0,138,1551 0/0:55,0:55:99:0,147,1711 0/0:130,0:130:99:0,343,4156 0/0:70,0:70:99:0,199,2402 0/0:90,0:90:99:0,238,2881 0/0:46,0:46:99:0,120,1431 0/0:64,0:64:99:0,175,2136 0/0:57,0:57:99:0,144,1672 0/0:46,2:48:84.55:0,85,1385 0/0:36,0:36:96.21:0,96,1091 0/0:46,0:46:99:0,117,1306 0/0:48,0:48:99:0,126,1426 0/0:40,0:40:99:0,105,1234 0/0:161,1:162:99:0,418,4726 0/0:52,0:52:99:0,138,1568 0/0:39,0:39:99:0,111,1272 0/0:45,0:46:99:0,120,1342 0/0:72,0:72:99:0,183,2037 0/0:76,1:77:99:0,160,2176 0/0:77,0:78:99:0,205,2282 0/0:60,0:60:99:0,171,1868 0/0:117,0:117:99:0,328,3965 0/0:67,0:67:99:0,174,2085 0/0:68,0:68:99:0,180,2156 0/0:60,0:60:99:0,153,1928 0/0:39,0:39:99:0,111,1264 0/1:31,25:56:99:724,0,673 0/0:46,0:46:99:0,123,1415 0/0:50,0:50:99:0,129,1477 0/0:35,0:35:99:0,99,1076 0/0:83,1:85:99:0,171,2334 0/0:55,0:56:99:0,144,1595 0/1:20,18:38:99:288,0,497 0/0:39,0:39:99:0,105,1188 0/1:28,20:48:99:522,0,707 0/0:67,0:67:99:0,183,2024 0/0:34,0:34:93.22:0,93,1019 0/0:47,0:47:99:0,123,1321 0/0:55,0:55:99:0,135,1543 0/0:32,0:32:93.24:0,93,1022 0/0:46,0:46:99:0,129,1461 19 605171 . T C 52544.69 . AC=54;AF=0.643;AN=84;BaseQRankSum=24.050;DP=2622;Dels=0.00;FS=2.632;HRun=2;HaplotypeScore=1.8444;InbreedingCoeff=-0.0370;MQ=57.10;MQ0=2;MQRankSum=-7.107;QD=22.40;ReadPosRankSum=0.587 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,162,1948 0/1:17,28:45:99:742,0,474 1/1:0,38:38:99:1261,99,0 0/1:84,63:148:99:1864,0,2229 1/1:0,106:106:99:3737,280,0 0/1:36,45:82:99:1400,0,903 1/1:1,76:77:99:2596,166,0 0/0:68,1:69:99:0,145,2131 0/1:23,20:43:99:615,0,660 0/1:17,34:51:99:1001,0,457 0/1:21,26:47:99:698,0,555 1/1:0,35:36:99:1263,105,0 1/1:1,33:34:60.15:1101,60,0 1/1:0,41:41:99:1332,105,0 0/1:61,57:118:99:1692,0,1641 0/1:27,26:53:99:785,0,745 0/1:19,18:37:99:500,0,534 1/1:0,50:50:99:1611,129,0 1/1:0,75:75:99:2434,193,0 1/1:0,97:97:99:3174,253,0 0/1:40,43:83:99:1232,0,955 0/1:37,38:75:99:1064,0,858 0/1:85,45:130:99:1284,0,2285 0/1:38,32:70:99:920,0,993 0/1:32,37:69:99:1167,0,815 1/1:0,62:62:99:2072,153,0 0/1:18,18:36:99:409,0,531 1/1:0,55:55:99:1773,141,0 0/0:45,0:45:99:0,123,1421 0/1:18,28:46:99:788,0,470 0/1:18,22:40:99:629,0,435 1/1:0,83:83:99:2499,193,0 0/0:64,0:64:99:0,159,1892 1/1:0,39:39:99:1414,111,0 0/1:30,11:41:99:287,0,839 1/1:1,54:55:99:1818,117,0 1/1:0,80:80:99:2564,208,0 1/1:0,49:49:99:1630,129,0 1/1:0,51:51:99:1713,138,0 0/1:23,24:47:99:659,0,685 0/0:40,0:40:99:0,102,1249 0/1:30,27:57:99:819,0,854 19 613307 . C T 15637.48 . AC=34;AF=0.405;AN=84;BaseQRankSum=2.046;DP=1522;Dels=0.00;FS=7.292;HRun=0;HaplotypeScore=1.5278;InbreedingCoeff=0.0093;MQ=53.46;MQ0=12;MQRankSum=-25.651;QD=17.32;ReadPosRankSum=0.625 GT:AD:DP:GQ:PL 0/0:29,0:29:84.21:0,84,981 0/1:17,16:33:99:446,0,365 0/1:16,9:25:99:246,0,515 0/0:43,0:43:99:0,117,1515 0/1:16,25:41:99:693,0,479 0/1:23,20:43:99:460,0,689 0/0:22,0:22:60.19:0,60,769 0/1:16,18:34:99:440,0,465 0/0:33,0:33:93.28:0,93,1130 0/0:20,0:20:51.13:0,51,605 0/1:14,11:25:99:277,0,402 0/1:19,8:27:99:179,0,592 0/0:22,0:22:57.15:0,57,659 1/1:0,31:31:81.25:1017,81,0 0/0:128,0:128:99:0,325,3869 0/0:37,0:37:99:0,102,1216 0/0:33,0:33:90.24:0,90,1059 0/0:18,1:19:15.56:0,16,567 0/0:46,0:48:99:0,114,1385 0/0:69,0:69:99:0,187,2265 1/1:0,50:50:99:1488,129,0 1/1:1,39:40:69.74:1119,70,0 0/0:55,0:55:99:0,150,1885 0/1:12,13:25:99:356,0,366 0/1:15,18:33:99:441,0,385 0/1:12,16:29:99:350,0,325 0/1:15,12:27:99:223,0,449 1/1:0,28:28:78.15:886,78,0 0/1:12,8:20:99:219,0,336 0/0:32,0:32:93.26:0,93,1096 0/1:10,8:18:99:190,0,281 0/1:29,42:71:99:933,0,755 0/1:28,24:52:99:645,0,774 1/1:0,26:26:78.21:931,78,0 0/1:11,14:25:99:360,0,313 0/1:12,14:26:99:381,0,342 1/1:1,43:45:99:1239,105,0 0/1:8,18:26:99:429,0,180 0/1:13,18:31:99:419,0,386 0/1:20,20:40:99:518,0,584 1/1:2,30:32:16.13:751,16,0 0/0:29,0:29:84.24:0,84,994 19 624894 . T A 1761.89 . AC=3;AF=0.036;AN=84;BaseQRankSum=2.823;DP=2220;DS;Dels=0.00;FS=10.914;HRun=0;HaplotypeScore=1.6705;InbreedingCoeff=-0.0370;MQ=56.14;MQ0=12;MQRankSum=1.378;QD=16.02;ReadPosRankSum=-0.600 GT:AD:DP:GQ:PL 0/1:16,21:37:99:659,0,449 0/1:21,18:39:99:544,0,606 0/0:24,0:25:66.20:0,66,795 0/0:124,0:124:99:0,370,4418 0/0:100,0:100:99:0,286,3471 0/0:71,0:71:99:0,196,2451 0/0:63,0:63:99:0,181,2189 0/0:70,0:70:99:0,205,2451 0/0:39,0:39:99:0,108,1317 0/0:27,0:27:78.23:0,78,935 0/0:38,0:39:99:0,108,1280 0/0:28,0:28:84.25:0,84,1020 0/0:30,0:30:87.27:0,87,1062 0/0:46,0:46:99:0,132,1591 0/0:108,0:108:99:0,319,3762 0/0:41,0:41:99:0,117,1405 0/0:34,0:34:99:0,102,1226 0/0:30,0:30:81.23:0,81,984 0/0:89,0:90:99:0,253,3038 0/0:86,0:86:99:0,244,2943 0/0:84,0:84:99:0,223,2620 0/0:56,0:56:99:0,159,1908 0/0:124,0:125:99:0,373,4519 0/0:52,0:52:99:0,147,1794 0/0:88,0:88:99:0,247,3004 0/0:61,0:61:99:0,178,2144 0/0:34,0:34:93.29:0,93,1133 0/0:35,0:35:99:0,99,1194 0/0:27,0:27:72.22:0,72,878 0/0:41,0:41:99:0,114,1378 0/0:35,0:35:99:0,99,1189 0/0:65,0:65:99:0,190,2275 0/0:69,0:69:99:0,196,2357 0/0:38,0:38:99:0,111,1367 0/0:19,0:19:57.17:0,57,683 0/0:37,0:37:99:0,108,1308 0/0:71,0:72:99:0,202,2384 0/0:34,0:34:99:0,99,1203 0/1:13,21:34:99:635,0,369 0/0:30,0:30:87.27:0,87,1053 0/0:21,0:21:51.15:0,51,616 0/0:36,0:36:99:0,105,1272 19 687035 . T A 382.89 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.923;DP=1142;Dels=0.00;FS=2.200;HRun=0;HaplotypeScore=1.4057;InbreedingCoeff=-0.0121;MQ=58.88;MQ0=0;MQRankSum=0.683;QD=14.73;ReadPosRankSum=0.091 GT:AD:DP:GQ:PL 0/0:18,0:18:54.17:0,54,656 0/0:19,0:19:54.16:0,54,649 0/0:19,0:19:57.17:0,57,687 0/0:56,0:56:99:0,153,1841 0/0:52,0:52:99:0,147,1784 0/0:27,0:27:75.22:0,75,899 0/0:32,0:32:78.24:0,78,985 0/0:41,0:42:99:0,105,1257 0/0:26,0:26:78.23:0,78,930 0/0:23,0:23:63.20:0,63,784 0/0:19,0:19:57.17:0,57,675 0/0:19,0:21:57.16:0,57,668 0/0:22,0:22:60.17:0,60,713 0/0:25,0:25:66.21:0,66,829 0/0:59,0:60:99:0,156,1824 0/0:19,0:19:51.14:0,51,602 0/0:24,0:24:72.18:0,72,834 0/0:22,0:22:63.17:0,63,745 0/0:30,0:30:87.26:0,87,1053 0/0:44,0:44:99:0,111,1363 0/0:45,0:45:99:0,123,1485 0/0:29,0:29:81.24:0,81,977 0/0:50,0:50:99:0,138,1676 0/0:22,0:22:57.16:0,57,683 0/0:30,0:30:84.25:0,84,1005 0/0:31,0:31:90.25:0,90,1060 0/0:13,0:13:39.11:0,39,462 0/0:21,0:21:60.18:0,60,731 0/0:18,0:18:51.14:0,51,609 0/0:16,0:16:48.15:0,48,587 0/0:16,0:16:48.14:0,48,570 0/0:34,0:34:87.25:0,87,1055 0/0:19,0:19:54.17:0,54,656 0/0:25,0:26:69.21:0,69,841 0/0:26,0:26:72.20:0,72,854 0/1:11,15:26:99:429,0,330 0/0:26,0:26:63.19:0,63,767 0/0:22,0:22:63.17:0,63,741 0/0:21,0:21:54.16:0,54,654 0/0:14,0:14:39.11:0,39,461 0/0:16,0:16:39.12:0,39,484 0/0:21,0:21:63.19:0,63,752 19 687078 . G A 1314.93 . AC=4;AF=0.048;AN=84;BaseQRankSum=1.034;DP=932;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.7915;InbreedingCoeff=-0.0505;MQ=58.36;MQ0=0;MQRankSum=0.514;QD=10.87;ReadPosRankSum=-0.979 GT:AD:DP:GQ:PL 0/0:17,0:17:45.13:0,45,534 0/0:13,0:13:33.09:0,33,384 0/0:17,0:18:45.11:0,45,506 0/0:31,0:31:90.23:0,90,1049 0/0:38,0:38:99:0,99,1206 0/0:21,1:22:54.15:0,54,638 0/0:19,0:19:51.15:0,51,639 0/0:35,0:35:87.25:0,87,1053 0/0:16,0:16:45.12:0,45,520 0/0:19,0:19:42.12:0,42,499 0/0:12,0:12:30.09:0,30,349 0/0:17,0:17:45.11:0,45,518 0/0:18,0:18:45.13:0,45,536 0/0:26,1:27:50.52:0,51,809 0/1:31,36:67:99:952,0,749 0/0:17,0:17:48.11:0,48,534 0/1:10,10:20:99:276,0,213 0/0:5,0:5:15.04:0,15,174 0/0:25,1:27:63.16:0,63,714 0/0:43,0:44:99:0,114,1324 0/0:26,0:26:63.18:0,63,755 0/0:23,0:23:54.10:0,54,590 0/0:35,0:35:87.23:0,87,1052 0/0:22,0:22:54.16:0,54,679 0/0:24,0:24:57.18:0,57,743 0/0:28,0:28:69.17:0,69,831 0/0:19,0:19:57.12:0,57,632 0/0:24,0:24:66.19:0,66,778 0/0:12,0:12:30.05:0,30,312 0/1:11,3:14:40.84:41,0,263 0/1:13,7:20:99:133,0,324 0/0:26,0:26:63.17:0,63,738 0/0:20,0:20:48.12:0,48,547 0/0:16,0:16:48.14:0,48,564 0/0:19,0:19:51.11:0,51,574 0/0:22,0:22:57.14:0,57,652 0/0:21,1:22:57.13:0,57,628 0/0:12,0:12:36.09:0,36,405 0/0:20,0:20:57.15:0,57,665 0/0:11,0:11:27.07:0,27,300 0/0:13,1:14:30.07:0,30,337 0/0:21,0:21:45.12:0,45,521 19 687112 . G A 778.82 . AC=4;AF=0.048;AN=84;BaseQRankSum=-4.272;DP=652;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3260;InbreedingCoeff=-0.0508;MQ=58.32;MQ0=0;MQRankSum=0.707;QD=9.06;ReadPosRankSum=0.086 GT:AD:DP:GQ:PL 0/0:13,0:13:39.12:0,39,483 0/0:8,0:8:21.04:0,21,221 0/0:9,0:9:27.08:0,27,325 0/0:30,0:30:87.28:0,87,1131 0/0:32,0:32:87.23:0,87,1131 0/0:14,0:14:36.11:0,36,456 0/0:13,0:13:36.12:0,36,473 0/0:17,0:17:45.14:0,45,571 0/0:12,0:12:21.04:0,21,239 0/0:14,0:14:39.11:0,39,476 0/0:21,0:21:60.17:0,60,710 0/0:13,0:13:33.10:0,33,409 0/0:7,0:7:21.02:0,21,224 0/0:17,0:17:48.12:0,48,561 0/1:24,25:50:99:667,0,634 0/0:15,0:15:45.14:0,45,549 0/1:6,5:11:99:122,0,144 0/0:8,0:8:24.04:0,24,263 0/0:13,0:13:36.10:0,36,422 0/0:29,0:29:75.20:0,75,897 0/0:14,0:14:39.12:0,39,480 0/0:19,0:19:51.16:0,51,633 0/0:30,0:30:87.28:0,87,1140 0/0:14,0:14:36.12:0,36,472 0/0:18,0:19:51.16:0,51,656 0/0:14,0:14:39.11:0,39,494 0/0:8,0:8:24.07:0,24,282 0/0:12,0:12:36.10:0,36,435 0/0:9,0:9:24.07:0,24,285 0/1:8,2:10:38.60:39,0,257 0/1:12,3:15:38.31:38,0,297 0/0:18,0:18:51.13:0,51,602 0/0:14,0:14:36.10:0,36,412 0/0:7,0:7:18.05:0,18,203 0/0:13,0:13:39.11:0,39,463 0/0:15,0:15:42.09:0,42,476 0/0:14,0:14:42.11:0,42,482 0/0:10,0:10:30.09:0,30,359 0/0:10,0:10:27.08:0,27,318 0/0:11,0:11:30.09:0,30,359 0/0:14,0:14:42.13:0,42,506 0/0:16,0:16:45.14:0,45,562 19 687142 . G A 14923.19 . AC=84;AF=1.000;AN=84;DP=432;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5009;InbreedingCoeff=-0.0044;MQ=58.62;MQ0=0;QD=34.54 GT:AD:DP:GQ:PL 1/1:0,7:7:18.06:225,18,0 1/1:0,5:6:15.05:183,15,0 1/1:0,9:9:27.08:328,27,0 1/1:0,25:25:75.23:916,75,0 1/1:0,23:23:69.21:863,69,0 1/1:0,10:10:27.09:345,27,0 1/1:0,8:8:21.06:263,21,0 1/1:0,10:10:30.09:374,30,0 1/1:0,11:11:33.10:389,33,0 1/1:0,10:10:27.08:331,27,0 1/1:0,15:15:39.12:476,39,0 1/1:0,7:7:21.07:259,21,0 1/1:0,4:4:12.03:137,12,0 1/1:0,8:8:24.08:300,24,0 1/1:0,22:22:60.18:734,60,0 1/1:0,9:9:27.08:320,27,0 1/1:0,8:8:24.07:292,24,0 1/1:0,6:6:12.04:161,12,0 1/1:0,6:6:18.06:222,18,0 1/1:0,14:14:39.12:487,39,0 1/1:0,7:7:21.06:255,21,0 1/1:0,11:11:33.10:399,33,0 1/1:0,21:21:63.18:764,63,0 1/1:0,10:10:30.09:355,30,0 1/1:0,12:12:33.09:402,33,0 1/1:0,7:7:21.06:255,21,0 1/1:0,5:5:15.04:180,15,0 1/1:0,7:7:18.06:227,18,0 1/1:0,12:12:27.08:337,27,0 1/1:0,11:11:33.10:394,33,0 1/1:0,12:12:33.07:395,33,0 1/1:0,9:9:27.08:329,27,0 1/1:0,10:10:27.07:311,27,0 1/1:0,10:10:27.08:339,27,0 1/1:0,7:7:21.06:252,21,0 1/1:0,11:11:27.07:332,27,0 1/1:0,9:9:21.07:262,21,0 1/1:0,14:14:42.12:496,42,0 1/1:0,5:5:15.05:185,15,0 1/1:0,9:9:27.08:326,27,0 1/1:0,6:6:15.05:185,15,0 1/1:0,9:9:27.09:339,27,0 19 691909 . T C 21444.60 . AC=62;AF=0.738;AN=84;BaseQRankSum=-7.706;DP=1099;Dels=0.00;FS=7.282;HRun=0;HaplotypeScore=1.2406;InbreedingCoeff=0.0143;MQ=58.73;MQ0=0;MQRankSum=-0.288;QD=21.66;ReadPosRankSum=-2.029 GT:AD:DP:GQ:PL 0/1:14,6:21:99:121,0,406 1/1:0,7:7:21.06:240,21,0 1/1:0,19:19:48.11:527,48,0 0/0:78,1:79:99:0,184,2487 0/1:23,31:54:99:844,0,658 1/1:0,32:32:90.24:1054,90,0 1/1:0,40:41:96.25:1161,96,0 0/1:21,20:41:99:434,0,563 0/1:9,8:17:99:161,0,234 1/1:0,20:20:51.14:589,51,0 0/1:9,6:15:99:117,0,242 1/1:0,26:26:60.14:664,60,0 0/1:13,5:18:64.61:65,0,396 1/1:0,18:18:45.11:479,45,0 0/1:21,24:45:99:662,0,504 0/1:9,19:28:99:552,0,227 1/1:0,17:17:45.08:494,45,0 1/1:0,17:17:45.12:503,45,0 1/1:0,33:33:81.23:957,81,0 1/1:0,32:32:75.20:866,75,0 1/1:0,24:24:69.16:749,69,0 0/1:13,12:25:99:315,0,358 0/1:39,30:69:99:809,0,1142 1/1:0,25:25:66.20:805,66,0 1/1:0,33:33:90.24:1073,90,0 1/1:0,28:28:75.22:908,75,0 0/1:7,4:11:77.16:77,0,159 0/0:17,0:17:42.12:0,42,497 1/1:0,13:13:36.07:373,36,0 1/1:0,13:13:33.07:345,33,0 0/1:7,9:16:99:221,0,165 1/1:0,21:21:57.14:628,57,0 1/1:0,35:35:93.20:1037,93,0 0/1:8,9:17:99:228,0,199 1/1:0,17:17:45.10:507,45,0 0/1:12,8:20:99:194,0,334 1/1:0,28:28:78.21:891,78,0 1/1:0,11:12:27.06:300,27,0 1/1:0,24:24:66.13:703,66,0 0/1:13,17:30:99:424,0,363 0/1:13,15:28:99:367,0,275 0/0:13,0:13:39.11:0,39,456 19 731135 . G C 103.56 . AC=9;AF=0.107;AN=84;BaseQRankSum=-1.822;DP=389;Dels=0.00;FS=154.258;HRun=4;HaplotypeScore=0.9459;InbreedingCoeff=-0.1505;MQ=56.72;MQ0=0;MQRankSum=2.350;QD=1.28;ReadPosRankSum=-5.582 GT:AD:DP:GQ:PL 0/0:9,1:10:22.30:0,22,249 0/0:4,1:5:0.85:7,0,109 0/1:5,1:6:20.47:20,0,92 0/1:11,7:18:30.88:31,0,321 0/0:9,2:11:27.08:0,27,316 0/0:8,1:9:20.65:0,21,217 0/0:8,1:9:18.61:0,19,231 0/0:4,1:5:12.03:0,12,137 0/0:7,2:9:15.03:0,15,161 0/0:7,1:8:21.05:0,21,226 0/0:9,1:10:24.06:0,24,263 0/1:3,2:5:20.60:21,0,66 0/0:2,0:2:3.01:0,3,31 0/0:9,0:9:24.06:0,24,260 0/0:30,2:32:51.70:0,52,845 0/1:4,3:7:38.26:38,0,109 0/0:7,0:7:21.05:0,21,228 0/0:7,1:8:21.06:0,21,231 0/0:16,2:18:11.66:0,12,403 0/0:10,2:12:24.06:0,24,268 0/0:5,1:6:15.04:0,15,162 0/1:6,3:9:25.32:25,0,155 0/0:21,3:24:30.94:0,31,715 0/0:11,3:14:30.09:0,30,359 0/0:10,1:11:27.07:0,27,306 0/0:9,1:10:24.07:0,24,277 0/0:5,1:6:9.02:0,9,94 0/0:4,0:4:9.02:0,9,96 0/1:6,1:7:8.57:9,0,185 0/0:10,1:11:30.08:0,30,327 0/0:5,1:6:12.03:0,12,136 0/0:6,1:7:15.02:0,15,158 0/0:4,2:7:6.02:0,6,65 0/0:3,0:3:9.02:0,9,92 0/1:7,1:8:20.55:21,0,129 0/0:5,0:5:15.04:0,15,163 0/0:9,1:10:27.06:0,27,286 0/1:7,1:8:20.53:21,0,144 0/0:6,0:6:18.05:0,18,202 0/0:5,2:7:12.03:0,12,127 0/1:10,3:13:38.73:39,0,250 0/0:6,1:7:18.04:0,18,195 19 731144 . A G 4297.41 . AC=39;AF=0.464;AN=84;BaseQRankSum=-7.097;DP=439;Dels=0.00;FS=33.793;HRun=0;HaplotypeScore=0.8699;InbreedingCoeff=-0.0299;MQ=54.83;MQ0=0;MQRankSum=3.376;QD=14.92;ReadPosRankSum=-0.722 GT:AD:DP:GQ:PL 0/1:5,3:8:55.85:56,0,165 0/1:3,4:7:88.12:107,0,88 0/1:2,3:5:22.32:88,0,22 0/0:22,0:23:63.18:0,63,742 0/0:12,0:12:30.09:0,30,369 1/1:0,9:9:24.07:288,24,0 1/1:0,10:10:21.06:239,21,0 1/1:0,6:6:15.04:177,15,0 0/0:9,0:9:24.07:0,24,280 0/1:3,7:10:79.78:137,0,80 0/1:3,6:9:87.27:137,0,87 0/1:4,1:5:21.40:21,0,90 0/0:2,0:2:6.02:0,6,68 1/1:0,6:6:9.02:91,9,0 0/1:14,15:30:99:363,0,375 0/0:12,0:12:36.09:0,36,407 0/1:6,3:9:73.16:73,0,193 0/1:5,5:10:99:114,0,151 0/0:24,0:25:63.18:0,63,735 0/1:5,8:14:99:169,0,142 0/1:8,3:11:39.26:39,0,247 0/0:13,0:13:39.11:0,39,440 0/1:20,8:28:99:205,0,638 0/1:8,5:13:99:140,0,196 0/0:12,0:12:30.08:0,30,360 1/1:0,12:12:27.08:316,27,0 0/0:9,0:9:27.08:0,27,311 0/1:3,3:6:86.61:87,0,88 0/1:3,3:6:80.37:80,0,92 0/0:12,0:12:36.10:0,36,421 0/1:3,3:6:84.01:84,0,92 0/1:4,2:6:50.89:51,0,95 0/0:10,0:10:27.08:0,27,312 1/1:0,4:4:12.03:130,12,0 0/1:1,9:10:9.06:241,0,9 1/1:0,5:6:15.03:157,15,0 1/1:0,8:8:24.06:262,24,0 0/1:9,2:11:32.84:33,0,277 1/1:0,6:6:18.05:195,18,0 0/1:5,4:9:99:105,0,149 0/0:11,1:12:6.47:0,6,345 0/1:3,5:8:81.94:111,0,82 19 731176 . A G 424.58 . AC=4;AF=0.048;AN=84;BaseQRankSum=-2.714;DP=406;Dels=0.00;FS=6.449;HRun=1;HaplotypeScore=0.3867;InbreedingCoeff=-0.0721;MQ=57.45;MQ0=0;MQRankSum=1.878;QD=8.33;ReadPosRankSum=0.448 GT:AD:DP:GQ:PL 0/0:8,0:8:18.03:0,18,202 0/0:10,0:10:21.07:0,21,256 0/0:7,0:7:18.05:0,18,214 0/0:25,0:25:72.18:0,72,839 0/0:13,0:14:33.07:0,33,367 0/0:12,0:12:30.09:0,30,380 0/0:11,0:11:33.09:0,33,383 0/0:9,0:9:24.07:0,24,292 0/0:6,0:6:15.05:0,15,185 0/0:10,0:11:30.07:0,30,332 0/0:9,0:9:24.04:0,24,269 0/0:4,0:4:12.03:0,12,138 0/0:3,0:3:6.02:0,6,72 0/0:7,0:7:18.05:0,18,211 0/0:19,0:19:51.16:0,51,621 0/0:10,0:10:27.06:0,27,315 0/1:4,7:11:99:160,0,113 0/0:8,0:8:21.03:0,21,240 0/1:5,3:9:89.82:90,0,114 0/0:6,2:8:0.46:10,0,191 0/0:16,0:17:39.11:0,39,459 0/0:7,0:8:21.05:0,21,240 0/0:23,1:26:66.13:0,66,726 0/1:7,5:12:99:141,0,177 0/1:13,5:19:99:117,0,341 0/0:8,0:8:21.06:0,21,260 0/0:9,0:9:21.06:0,21,261 0/0:5,0:5:15.04:0,15,171 0/0:6,0:6:15.03:0,15,158 0/0:6,0:6:15.05:0,15,181 0/0:4,0:4:9.01:0,9,103 0/0:7,0:7:18.05:0,18,215 0/0:5,0:5:15.02:0,15,160 0/0:7,0:7:18.05:0,18,211 0/0:6,0:6:15.05:0,15,187 0/0:8,1:9:21.06:0,21,252 0/0:8,0:9:21.06:0,21,249 0/0:5,0:5:15.02:0,15,170 0/0:9,0:9:24.06:0,24,269 0/0:8,0:8:24.06:0,24,284 0/0:10,0:11:21.06:0,21,246 0/0:9,0:9:21.06:0,21,252 19 804912 . C T 2085.51 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.485;DP=2468;Dels=0.00;FS=15.013;HRun=0;HaplotypeScore=2.4075;InbreedingCoeff=-0.0244;MQ=59.03;MQ0=0;MQRankSum=4.608;QD=10.75;ReadPosRankSum=0.752 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,126,1545 0/0:41,0:41:99:0,114,1392 0/0:61,0:61:99:0,175,2125 0/1:60,42:102:99:1137,0,1812 0/0:88,0:90:99:0,229,2986 0/0:71,0:71:99:0,193,2497 0/0:73,0:73:99:0,184,2354 0/0:65,0:65:99:0,160,2122 0/0:43,0:43:99:0,120,1495 0/0:42,0:42:99:0,114,1394 0/0:40,0:40:99:0,117,1417 0/0:52,0:52:99:0,141,1731 0/0:35,0:35:93.28:0,93,1163 0/0:57,0:57:99:0,159,1944 0/0:161,0:162:99:0,415,5131 0/0:60,0:60:99:0,153,1866 0/0:47,0:47:99:0,132,1610 0/0:48,0:48:99:0,129,1581 0/0:75,0:75:99:0,193,2310 0/0:76,0:76:99:0,208,2522 0/0:79,0:79:99:0,214,2523 0/0:59,0:59:99:0,168,2009 0/1:54,38:92:99:1011,0,1719 0/0:67,0:67:99:0,175,2281 0/0:52,0:52:99:0,141,1800 0/0:71,0:71:99:0,178,2310 0/0:40,0:40:99:0,111,1335 0/0:52,0:52:99:0,138,1678 0/0:25,0:25:72.23:0,72,924 0/0:62,0:62:99:0,159,1998 0/0:48,0:48:99:0,132,1596 0/0:67,0:67:99:0,175,2160 0/0:49,0:49:99:0,132,1604 0/0:46,0:47:99:0,120,1504 0/0:42,0:42:99:0,111,1295 0/0:41,0:41:99:0,123,1548 0/0:70,0:70:99:0,174,2087 0/0:36,0:36:99:0,102,1260 0/0:48,0:48:99:0,132,1619 0/0:54,0:54:99:0,147,1790 0/0:35,0:35:96.28:0,96,1179 0/0:44,0:44:99:0,129,1600 19 814907 . A G 1521.06 . AC=4;AF=0.048;AN=84;BaseQRankSum=3.833;DP=1624;Dels=0.00;FS=4.457;HRun=2;HaplotypeScore=1.1276;InbreedingCoeff=-0.0501;MQ=58.89;MQ0=0;MQRankSum=1.283;QD=8.79;ReadPosRankSum=-0.860 GT:AD:DP:GQ:PL 0/0:38,2:40:90.27:0,90,1092 0/0:17,1:18:42.12:0,42,491 0/0:34,1:35:84.25:0,84,987 0/0:100,0:100:99:0,220,2638 0/0:60,0:60:99:0,153,1805 0/0:49,0:49:99:0,111,1366 0/0:50,0:50:99:0,123,1478 0/0:50,0:50:99:0,126,1517 0/0:40,0:40:99:0,102,1228 0/0:24,0:24:57.17:0,57,690 0/0:39,0:39:99:0,102,1205 0/0:35,0:35:99:0,99,1151 0/0:27,0:27:69.18:0,69,794 0/0:25,0:25:60.17:0,60,723 0/0:99,2:101:99:0,241,2808 0/0:26,0:26:69.20:0,69,801 0/0:34,0:34:93.27:0,93,1098 0/0:22,0:22:48.15:0,48,591 0/0:36,3:39:78.23:0,78,940 0/0:40,0:40:99:0,99,1171 0/0:48,0:48:99:0,108,1255 0/0:29,0:30:75.20:0,75,860 0/1:47,28:75:99:696,0,1172 0/0:39,1:40:96.28:0,96,1167 0/0:44,1:45:99:0,114,1353 0/0:42,0:42:99:0,105,1229 0/0:27,0:27:60.17:0,60,719 0/0:23,0:23:60.16:0,60,689 0/0:39,0:39:99:0,99,1173 0/0:25,0:25:66.19:0,66,782 0/0:33,0:33:93.26:0,93,1085 0/1:24,14:38:99:296,0,633 0/0:28,0:28:78.22:0,78,901 0/1:21,17:38:99:446,0,569 0/1:15,7:22:99:169,0,370 0/0:28,1:29:72.20:0,72,854 0/0:41,0:41:99:0,105,1241 0/0:31,0:31:81.22:0,81,935 0/0:26,0:26:72.21:0,72,850 0/0:29,1:30:72.22:0,72,864 0/0:28,2:30:20.65:0,21,872 0/0:29,1:30:75.22:0,75,894 19 815835 . G A 535.95 . AC=20;AF=0.238;AN=84;BaseQRankSum=-13.596;DP=1480;Dels=0.00;FS=399.229;HRun=2;HaplotypeScore=0.6267;InbreedingCoeff=-0.3246;MQ=58.17;MQ0=0;MQRankSum=0.570;QD=0.85;ReadPosRankSum=-9.940 GT:AD:DP:GQ:PL 0/0:20,6:26:11.68:0,12,465 0/1:17,7:24:15.20:15,0,365 0/1:20,6:26:5.26:5,0,435 0/1:41,18:59:48.93:49,0,765 0/0:49,7:56:71.83:0,72,1222 0/0:26,9:36:41.46:0,41,749 0/0:22,1:23:48.13:0,48,593 0/0:19,3:22:10.38:0,10,332 0/0:32,8:40:9.38:0,9,729 0/0:13,9:22:32.67:0,33,368 0/1:18,9:27:6.60:7,0,499 0/1:22,12:34:18.71:19,0,352 0/0:29,5:34:1.74:3,0,613 0/0:30,11:41:10.39:0,10,662 0/0:80,19:99:51.74:0,52,2095 0/0:29,7:36:66.69:0,67,717 0/1:23,5:28:48.35:48,0,522 0/1:15,12:27:95.53:96,0,377 0/1:29,8:37:11.44:11,0,729 0/0:41,3:44:81.23:0,81,1018 0/0:37,7:44:47.80:0,48,1044 0/1:31,8:39:9.28:9,0,766 0/0:42,15:57:92.97:0,93,1073 0/0:27,4:31:51.13:0,51,625 0/0:37,2:39:66.16:0,66,794 0/0:26,4:30:8.84:0,9,586 0/1:10,4:14:41.92:42,0,261 0/1:27,7:34:14.71:15,0,583 0/1:17,5:22:54.43:54,0,252 0/0:25,4:29:2.81:0,3,530 0/1:26,11:37:51.44:51,0,462 0/0:40,3:43:75.21:0,75,908 0/0:25,7:32:32.31:0,32,628 0/1:21,6:28:20.96:21,0,480 0/0:26,7:33:24.81:0,25,767 0/1:26,9:36:9.60:10,0,633 0/1:34,13:47:9.29:9,0,795 0/0:23,9:33:38.84:0,39,593 0/1:24,7:31:52.34:52,0,468 0/1:17,7:25:76.68:77,0,400 0/1:19,5:24:18.66:19,0,441 0/1:21,10:31:86.85:87,0,502 19 846169 . G A 21.24 . AC=1;AF=0.014;AN=74;BaseQRankSum=0.752;DP=169;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.1414;InbreedingCoeff=-0.0565;MQ=57.77;MQ0=0;MQRankSum=-1.258;QD=5.31;ReadPosRankSum=-0.246 GT:AD:DP:GQ:PL 0/0:4,0:4:12.04:0,12,153 0/0:4,0:4:12.04:0,12,143 0/0:5,0:5:15.05:0,15,190 0/0:4,0:4:12.04:0,12,161 0/0:4,0:4:12.04:0,12,155 0/1:2,2:4:66.40:66,0,72 ./. ./. 0/0:3,0:3:9.03:0,9,114 ./. 0/0:2,0:2:6.02:0,6,76 0/0:3,0:3:9.02:0,9,100 0/0:3,0:3:9.03:0,9,113 0/0:6,0:6:18.05:0,18,218 0/0:9,0:9:27.08:0,27,334 0/0:11,0:11:33.10:0,33,406 0/0:4,0:4:9.03:0,9,114 0/0:4,0:4:12.04:0,12,152 0/0:3,0:3:9.03:0,9,112 0/0:8,0:8:24.08:0,24,309 0/0:7,0:7:21.07:0,21,262 0/0:5,0:5:15.05:0,15,189 0/0:6,0:6:18.06:0,18,239 ./. 0/0:3,0:3:9.03:0,9,120 0/0:2,0:2:6.02:0,6,74 0/0:4,0:4:12.04:0,12,152 0/0:6,0:6:18.06:0,18,222 ./. 0/0:5,0:5:15.04:0,15,180 0/0:4,0:4:12.04:0,12,150 0/0:3,0:3:6.02:0,6,77 0/0:7,0:7:18.06:0,18,227 0/0:4,0:4:9.03:0,9,114 0/0:2,0:2:6.02:0,6,70 0/0:8,0:8:24.08:0,24,306 0/0:4,0:4:12.04:0,12,142 0/0:6,0:6:18.06:0,18,222 0/0:1,0:1:3.01:0,3,37 0/0:5,0:5:15.05:0,15,194 0/0:5,0:5:15.05:0,15,187 0/0:1,0:1:3.01:0,3,38 19 846331 . A T 94.41 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.323;DP=452;Dels=0.00;FS=9.961;HRun=1;HaplotypeScore=0.4077;InbreedingCoeff=-0.0241;MQ=58.61;MQ0=0;MQRankSum=0.511;QD=6.29;ReadPosRankSum=-0.359 GT:AD:DP:GQ:PL 0/0:9,0:9:24.08:0,24,303 0/0:7,0:7:18.04:0,18,208 0/0:10,0:10:27.08:0,27,333 0/0:22,0:22:54.15:0,54,643 0/0:18,0:18:45.13:0,45,542 0/0:10,0:10:24.08:0,24,313 0/0:11,0:11:30.09:0,30,369 0/0:12,0:12:24.07:0,24,311 0/0:9,0:9:27.08:0,27,318 0/0:8,0:8:21.06:0,21,253 0/0:8,0:8:24.07:0,24,282 0/0:10,0:12:24.07:0,24,296 0/0:5,0:5:12.04:0,12,149 0/1:1,5:6:19.31:137,0,19 0/0:28,0:28:60.18:0,60,767 0/0:16,0:16:48.14:0,48,557 0/1:8,1:9:16.73:17,0,209 0/0:12,0:12:33.10:0,33,412 0/0:7,0:7:18.06:0,18,225 0/0:14,0:14:33.10:0,33,405 0/0:22,0:22:54.16:0,54,654 0/0:12,0:12:27.08:0,27,345 0/0:22,0:22:42.12:0,42,523 0/0:6,0:6:18.06:0,18,220 0/0:12,0:12:30.09:0,30,372 0/0:8,0:8:18.05:0,18,221 0/0:4,0:4:12.03:0,12,135 0/0:6,0:6:12.04:0,12,150 0/0:5,0:5:15.05:0,15,181 0/0:9,0:9:24.06:0,24,273 0/0:13,0:13:39.11:0,39,459 0/0:14,0:14:33.10:0,33,420 0/0:5,0:5:15.04:0,15,174 0/0:7,0:7:18.05:0,18,220 0/0:5,0:5:9.03:0,9,117 0/0:10,0:10:24.07:0,24,294 0/0:17,0:17:42.12:0,42,497 0/0:11,0:11:27.05:0,27,310 0/0:12,0:12:27.08:0,27,341 0/0:2,0:2:6.02:0,6,70 0/0:10,0:10:27.08:0,27,327 0/0:7,0:7:18.06:0,18,221 19 855966 . C A 8143.78 . AC=10;AF=0.119;AN=84;BaseQRankSum=-6.948;DP=2036;Dels=0.00;FS=12.654;HRun=0;HaplotypeScore=1.6228;InbreedingCoeff=0.0919;MQ=59.18;MQ0=0;MQRankSum=-0.275;QD=15.54;ReadPosRankSum=-1.131 GT:AD:DP:GQ:PL 0/0:31,0:31:87.25:0,87,1063 0/0:35,0:35:96.29:0,96,1195 0/0:39,0:39:96.28:0,96,1205 0/1:63,44:107:99:1247,0,1742 0/0:90,0:90:99:0,256,3339 0/0:56,0:56:99:0,153,1988 0/0:59,0:59:99:0,156,1991 0/0:63,0:63:99:0,178,2276 0/1:25,26:51:99:737,0,713 0/1:19,20:39:99:548,0,525 0/0:34,0:34:96.27:0,96,1146 0/0:32,0:32:87.25:0,87,1067 0/0:28,0:28:84.25:0,84,1015 0/0:39,0:39:99:0,105,1311 0/0:107,0:107:99:0,286,3527 0/0:32,0:32:87.26:0,87,1066 0/0:32,0:32:90.25:0,90,1056 0/0:27,0:27:81.23:0,81,969 0/0:61,0:61:99:0,150,1838 0/0:60,0:61:99:0,169,2067 0/0:65,1:66:99:0,159,1958 0/0:51,2:54:96.60:0,97,1623 1/1:2,81:83:99:2680,220,0 0/1:36,24:60:99:582,0,1086 0/1:34,32:66:99:882,0,1060 0/0:41,0:41:99:0,111,1457 0/0:22,0:22:63.20:0,63,787 0/0:34,1:35:93.28:0,93,1149 0/0:36,0:36:93.28:0,93,1152 0/1:14,16:30:99:411,0,369 0/0:38,0:38:96.26:0,96,1175 0/0:70,0:70:99:0,196,2397 0/1:24,28:52:99:782,0,702 0/0:33,0:33:90.27:0,90,1122 0/1:23,13:36:99:275,0,730 0/0:35,0:35:96.27:0,96,1183 0/0:50,0:50:99:0,141,1719 0/0:39,0:40:99:0,108,1303 0/0:43,0:43:99:0,120,1456 0/0:47,0:47:99:0,123,1526 0/0:32,1:33:59.30:0,59,1078 0/0:43,0:43:99:0,111,1347 19 856130 . C T 1262.36 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.699;DP=4571;DS;Dels=0.00;FS=13.091;HRun=0;HaplotypeScore=5.2378;InbreedingCoeff=-0.0120;MQ=59.28;MQ0=0;MQRankSum=0.677;QD=16.18;ReadPosRankSum=-1.895 GT:AD:DP:GQ:PL 0/0:61,0:63:99:0,159,1926 0/0:65,0:66:99:0,172,2164 0/0:65,0:65:99:0,177,2137 0/0:249,0:250:99:0,650,8385 0/0:248,0:248:99:0,674,8760 0/0:219,0:220:99:0,551,7149 0/0:198,1:199:99:0,488,6448 0/0:204,0:204:99:0,515,6674 0/0:73,0:73:99:0,202,2461 0/0:49,0:49:99:0,141,1788 0/0:63,0:63:99:0,174,2139 0/0:52,0:52:99:0,150,1798 0/0:51,0:51:99:0,150,1835 0/1:30,48:78:99:1309,0,715 0/0:186,0:187:99:0,490,6038 0/0:78,0:78:99:0,214,2560 0/0:78,0:78:99:0,208,2572 0/0:46,0:46:99:0,129,1564 0/0:116,0:116:99:0,307,3643 0/0:145,0:145:99:0,391,4887 0/0:138,0:138:99:0,358,4295 0/0:108,0:108:99:0,286,3451 0/0:236,0:236:99:0,650,8551 0/0:187,0:187:99:0,472,6291 0/0:203,0:203:99:0,530,6993 0/0:197,0:197:99:0,508,6499 0/0:50,0:50:99:0,138,1688 0/0:68,0:68:99:0,184,2219 0/0:57,0:57:99:0,162,1963 0/0:67,0:67:99:0,181,2250 0/0:57,0:57:99:0,153,1879 0/0:164,0:164:99:0,409,5282 0/0:118,0:118:99:0,313,3924 0/0:51,0:51:99:0,141,1724 0/0:58,0:59:99:0,168,2053 0/0:56,0:56:99:0,159,1979 0/0:138,0:138:99:0,349,4222 0/0:61,1:62:99:0,130,2016 0/0:58,0:58:99:0,168,2020 0/0:50,0:51:99:0,141,1745 0/0:53,0:53:99:0,147,1774 0/0:62,0:62:99:0,162,2044 19 871135 . A G 474.43 . AC=17;AF=0.283;AN=60;BaseQRankSum=4.281;DP=79;Dels=0.00;FS=1.114;HRun=0;HaplotypeScore=0.1251;InbreedingCoeff=0.1449;MQ=57.67;MQ0=0;MQRankSum=1.452;QD=13.95;ReadPosRankSum=-0.685 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6.02:72,6,0 ./. 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6.02:0,6,65 1/1:0,1:1:3.01:40,3,0 ./. ./. ./. 0/1:2,1:3:27.11:27,0,51 0/0:1,1:2:3.01:0,3,35 ./. 1/1:0,2:2:3.01:38,3,0 0/1:0,1:1:1.76:36,3,0 0/0:3,0:3:6.01:0,6,63 0/0:7,0:7:21.06:0,21,240 0/1:1,1:2:27.42:27,0,29 0/0:3,0:3:6.02:0,6,71 ./. 1/1:0,3:3:9.03:114,9,0 0/0:3,0:3:6:0,6,60 0/0:2,0:2:6.02:0,6,65 0/0:3,0:3:9.02:0,9,94 ./. 0/0:1,0:1:3:0,3,29 0/0:2,0:2:6.01:0,6,59 0/1:2,2:4:59.35:63,0,59 0/1:2,2:4:51.06:62,0,51 0/0:1,0:1:3.01:0,3,34 0/0:2,0:2:6.02:0,6,70 ./. 0/1:4,3:7:61.33:61,0,101 0/0:3,0:3:9.03:0,9,106 1/1:0,1:1:3.01:38,3,0 ./. ./. 0/0:1,0:1:3.01:0,3,35 0/0:2,0:2:6.02:0,6,68 0/1:3,1:4:25.33:25,0,63 0/0:2,0:2:6.02:0,6,67 0/0:3,0:3:9.03:0,9,102 ./. 19 871222 . G A 821.77 . AC=19;AF=0.257;AN=74;BaseQRankSum=0.097;DP=140;Dels=0.00;FS=0.815;HRun=0;HaplotypeScore=0.1799;InbreedingCoeff=0.0560;MQ=58.97;MQ0=0;MQRankSum=0.606;QD=14.67;ReadPosRankSum=2.963 GT:AD:DP:GQ:PL 0/1:1,1:2:30.96:31,0,31 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.03:0,9,106 1/1:0,4:4:12.04:146,12,0 0/1:3,4:7:90.30:90,0,105 0/1:1,2:3:25.33:63,0,25 0/1:2,1:3:24.57:25,0,39 0/0:2,0:2:6.02:0,6,74 ./. 1/1:0,1:1:3.01:36,3,0 1/1:0,4:4:9.03:115,9,0 0/0:4,0:4:12.02:0,12,133 0/1:1,0:1:1.76:0,3,26 ./. 0/0:14,0:14:30.09:0,30,381 0/1:2,1:3:27.10:27,0,60 0/0:3,0:3:6.01:0,6,57 0/0:6,0:6:18.05:0,18,216 0/0:6,0:6:15.05:0,15,185 0/0:4,0:4:9.03:0,9,111 0/0:2,0:2:6.02:0,6,70 0/1:5,3:8:86.76:87,0,108 1/1:0,4:4:12.03:140,12,0 ./. 0/0:2,0:2:3.01:0,3,42 0/0:5,0:5:12.04:0,12,154 0/0:2,0:2:6.02:0,6,75 0/1:3,3:6:87.31:89,0,87 0/1:1,2:3:28.77:67,0,29 0/1:3,2:5:32.73:33,0,90 0/0:1,0:1:3.01:0,3,36 0/0:9,0:9:24.07:0,24,293 0/0:2,0:2:6.02:0,6,74 0/1:1,1:2:30.11:30,0,30 ./. ./. 0/0:4,0:4:9.03:0,9,114 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.02:0,6,70 0/0:3,0:3:9.01:0,9,89 0/0:6,0:6:15.05:0,15,195 0/0:2,0:2:6.02:0,6,69 19 890165 . G A 853.59 . AC=16;AF=0.200;AN=80;BaseQRankSum=-4.846;DP=184;Dels=0.00;FS=0.714;HRun=0;HaplotypeScore=0.2515;InbreedingCoeff=-0.1471;MQ=58.69;MQ0=0;MQRankSum=2.637;QD=12.37;ReadPosRankSum=0.404 GT:AD:DP:GQ:PL 0/1:2,2:4:61.01:61,0,64 0/1:2,1:3:29.23:29,0,39 ./. 0/0:5,0:5:12.04:0,12,158 0/0:6,0:6:15.05:0,15,210 0/1:1,1:2:28.33:28,0,35 0/0:2,0:2:6.02:0,6,82 0/0:3,0:3:6.02:0,6,77 0/1:2,1:3:28.77:29,0,67 0/0:2,0:2:6.02:0,6,73 0/0:2,0:2:6.02:0,6,79 0/0:4,0:4:9.03:0,9,116 1/1:0,7:7:15.05:191,15,0 0/0:4,0:4:9.03:0,9,120 0/0:12,0:12:30.08:0,30,363 0/0:6,0:6:15.04:0,15,171 0/1:1,2:3:19.63:57,0,20 0/0:3,0:3:6.02:0,6,82 0/0:6,0:6:12.04:0,12,162 0/1:7,3:10:81.28:81,0,199 0/0:11,0:11:30.08:0,30,374 0/0:5,0:5:12.04:0,12,157 0/0:5,0:5:15.05:0,15,206 0/1:1,2:3:33.98:54,0,34 ./. 0/1:2,5:7:62.58:109,0,63 0/1:4,4:8:99:103,0,133 0/0:3,0:3:9.03:0,9,112 0/0:4,0:4:12.04:0,12,151 0/1:3,4:7:74.47:74,0,89 0/0:2,0:2:6.02:0,6,76 0/1:1,0:1:1.76:0,3,41 0/0:7,0:7:18.06:0,18,234 0/1:1,1:2:31.78:32,0,33 0/0:6,0:6:18.05:0,18,219 0/1:3,1:4:24.94:25,0,101 0/0:4,0:4:9.03:0,9,122 0/0:2,0:2:6.02:0,6,77 0/1:1,4:5:23.53:132,0,24 0/0:2,0:2:6.02:0,6,69 0/0:2,0:2:6.02:0,6,73 0/0:7,0:7:18.06:0,18,234 19 899444 . C T 7335.15 . 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T C 50970.27 . AC=81;AF=0.964;AN=84;BaseQRankSum=-1.661;DP=1734;Dels=0.00;FS=4.317;HRun=0;HaplotypeScore=2.6823;InbreedingCoeff=-0.0370;MQ=58.37;MQ0=1;MQRankSum=-0.043;QD=29.39;ReadPosRankSum=-0.866 GT:AD:DP:GQ:PL 1/1:0,31:32:75.21:871,75,0 1/1:0,30:30:72.19:836,72,0 1/1:0,16:16:42.11:471,42,0 1/1:0,100:100:99:3090,253,0 1/1:0,110:110:99:3354,271,0 1/1:0,66:67:99:2048,168,0 1/1:0,46:46:99:1514,126,0 1/1:0,68:68:99:2141,177,0 1/1:0,24:24:66.19:774,66,0 1/1:0,30:30:75.15:845,75,0 1/1:0,16:16:48.11:522,48,0 1/1:0,23:23:60.15:695,60,0 1/1:0,19:19:51.12:568,51,0 1/1:0,26:26:69.20:812,69,0 1/1:0,117:117:99:3464,292,0 1/1:0,30:30:84.18:937,84,0 1/1:0,32:32:87.21:978,87,0 1/1:0,24:24:57.12:632,57,0 1/1:0,50:50:99:1319,117,0 1/1:0,61:61:99:1715,147,0 1/1:0,42:42:99:1324,114,0 1/1:0,39:39:99:1183,105,0 1/1:0,92:93:99:2939,244,0 1/1:0,57:58:99:1731,141,0 1/1:0,64:64:99:2124,172,0 1/1:0,44:44:96.26:1176,96,0 1/1:0,17:17:45.11:500,45,0 1/1:0,29:29:72.19:828,72,0 1/1:0,32:32:81.22:934,81,0 1/1:0,26:26:66.17:742,66,0 1/1:0,22:22:57.15:674,57,0 1/1:0,54:54:99:1586,138,0 1/1:0,31:31:78.19:896,78,0 1/1:0,23:23:66.18:756,66,0 1/1:0,19:19:54.14:609,54,0 0/1:15,18:33:99:416,0,396 1/1:0,63:63:99:1948,168,0 1/1:0,17:17:42.11:476,42,0 1/1:0,31:31:84.23:973,84,0 0/1:9,13:22:99:370,0,220 0/1:11,10:22:99:245,0,292 1/1:0,32:32:87.18:956,87,0 19 971933 . A G 33259.10 . AC=60;AF=0.714;AN=84;BaseQRankSum=3.455;DP=1511;Dels=0.00;FS=11.173;HRun=2;HaplotypeScore=1.4287;InbreedingCoeff=0.0667;MQ=58.38;MQ0=0;MQRankSum=-0.160;QD=24.76;ReadPosRankSum=0.818 GT:AD:DP:GQ:PL 1/1:0,29:29:84.24:1005,84,0 1/1:0,32:32:81.23:984,81,0 1/1:0,33:33:90.27:1097,90,0 0/0:70,0:70:99:0,196,2320 0/1:26,38:64:99:1112,0,734 0/1:24,25:49:99:775,0,723 1/1:0,48:48:99:1707,138,0 0/0:41,0:41:99:0,120,1457 0/1:13,17:30:99:508,0,376 1/1:0,23:23:63.17:744,63,0 0/1:11,8:19:99:186,0,355 0/1:8,11:19:99:312,0,244 1/1:0,25:25:63.19:750,63,0 0/1:15,19:34:99:611,0,375 1/1:1,72:74:99:2282,196,0 1/1:0,40:40:99:1265,105,0 1/1:1,26:27:37.42:818,37,0 0/1:12,17:30:99:456,0,358 1/1:0,39:39:99:1188,99,0 0/1:28,21:50:99:493,0,828 1/1:0,44:44:99:1321,111,0 0/1:23,28:51:99:798,0,566 0/1:33,34:67:99:969,0,886 1/1:1,45:46:87.79:1508,88,0 1/1:0,41:41:99:1459,114,0 0/1:20,15:35:99:469,0,597 1/1:0,19:19:51.15:630,51,0 1/1:0,28:28:72.22:883,72,0 1/1:0,21:21:60.17:726,60,0 1/1:0,28:28:78.23:942,78,0 0/1:13,14:27:99:409,0,392 0/1:15,10:25:99:230,0,379 0/1:18,17:35:99:471,0,534 1/1:0,27:27:81.25:1001,81,0 1/1:0,30:30:87.26:1051,87,0 0/1:11,17:28:99:460,0,323 1/1:0,34:34:87.25:1031,87,0 1/1:0,30:30:90.28:1102,90,0 1/1:0,32:32:96.25:1120,96,0 0/0:35,0:35:99:0,102,1235 0/1:15,15:30:99:387,0,405 0/0:22,0:22:63.20:0,63,776 19 971949 . G A 20289.65 . AC=71;AF=0.845;AN=84;BaseQRankSum=-3.956;DP=782;Dels=0.00;FS=0.939;HRun=0;HaplotypeScore=0.6691;InbreedingCoeff=-0.1941;MQ=57.59;MQ0=0;MQRankSum=-0.317;QD=25.95;ReadPosRankSum=-0.986 GT:AD:DP:GQ:PL 1/1:0,21:21:57.14:661,57,0 1/1:0,15:15:45.10:515,45,0 1/1:0,19:19:57.16:662,57,0 0/1:14,14:28:99:370,0,364 1/1:0,37:38:93.23:1076,93,0 1/1:0,23:23:66.19:794,66,0 1/1:0,25:25:69.19:805,69,0 0/1:9,7:17:99:172,0,309 0/1:7,9:16:99:271,0,210 1/1:0,11:11:27.08:317,27,0 0/1:4,2:6:30.29:58,0,30 0/1:2,7:9:43.07:204,0,43 1/1:0,12:12:33.09:377,33,0 0/1:7,9:16:99:278,0,212 1/1:1,34:35:71.57:1037,72,0 1/1:1,29:30:51.72:911,52,0 1/1:1,24:25:63.16:727,63,0 0/1:9,11:20:99:322,0,251 1/1:0,15:15:36.11:433,36,0 0/1:9,14:23:99:424,0,158 1/1:0,22:22:57.14:651,57,0 1/1:0,30:30:87.24:1022,87,0 0/1:12,13:25:99:343,0,360 1/1:0,20:20:57.17:681,57,0 1/1:0,19:19:54.16:663,54,0 1/1:0,22:23:63.14:721,63,0 1/1:0,13:13:33.10:390,33,0 1/1:1,19:20:51.14:599,51,0 1/1:1,11:12:21.06:253,21,0 1/1:2,15:17:8.66:403,9,0 1/1:1,12:13:33.08:387,33,0 0/1:7,7:14:99:154,0,200 1/1:0,19:19:54.13:619,54,0 1/1:0,21:21:60.16:696,60,0 1/1:0,10:10:27.08:326,27,0 0/1:9,5:14:99:142,0,259 1/1:1,12:13:2.84:315,0,0 1/1:0,10:10:27.08:320,27,0 1/1:0,17:17:39.12:471,39,0 0/1:13,8:21:99:192,0,346 0/1:9,4:13:99:102,0,186 1/1:0,12:12:36.10:422,36,0 19 1011424 . C G 1049.25 . AC=37;AF=0.474;AN=78;BaseQRankSum=-3.020;DP=170;Dels=0.01;FS=141.771;HRun=1;HaplotypeScore=0.4100;InbreedingCoeff=-0.2185;MQ=58.37;MQ0=0;MQRankSum=1.131;QD=7.89;ReadPosRankSum=-5.287 GT:AD:DP:GQ:PL 0/1:2,1:3:26.23:26,0,62 1/1:1,3:4:6.01:57,6,0 0/1:2,4:6:62.06:92,0,62 1/1:2,4:6:9.02:99,9,0 0/1:1,4:5:18.65:56,0,19 1/1:0,6:6:3.01:32,3,0 1/1:0,4:4:6.02:75,6,0 0/1:1,4:5:29.23:31,0,29 0/0:1,1:2:3.01:0,3,34 0/1:0,1:1:1.76:23,3,0 ./. 1/1:0,1:1:3.01:34,3,0 ./. 0/1:1,1:2:18.68:19,0,33 0/1:11,9:20:64.22:64,0,294 0/0:4,0:4:12.03:0,12,132 ./. 0/1:2,2:4:24.27:24,0,26 0/1:2,2:4:30.96:31,0,33 0/0:2,4:6:6.01:0,6,58 0/1:1,4:5:29.55:67,0,30 0/1:3,1:4:17.59:18,0,95 0/1:1,3:4:27.10:64,0,27 0/0:2,0:2:6.02:0,6,72 0/1:1,4:5:28.77:53,0,29 0/0:2,0:2:6.02:0,6,69 1/1:0,1:1:3:27,3,0 1/1:0,2:2:3.01:39,3,0 0/1:1,1:2:25.53:31,0,26 0/1:1,1:2:28.33:28,0,33 0/1:2,4:6:19.62:20,0,69 0/0:3,2:5:6.01:0,6,64 0/0:3,0:3:6.02:0,6,70 0/0:2,3:5:6.02:0,6,73 0/1:1,5:6:18.58:80,0,19 0/1:3,3:6:21.40:21,0,88 0/0:2,0:2:6.02:0,6,77 0/1:5,2:7:19.52:20,0,96 0/1:1,3:4:1.94:35,2,0 0/0:2,0:2:6.02:0,6,67 1/1:1,2:3:3.01:33,3,0 0/1:2,3:5:19.63:20,0,57 19 1012120 . G A 4618.68 . AC=18;AF=0.214;AN=84;BaseQRankSum=1.845;DP=545;Dels=0.00;FS=2.062;HRun=0;HaplotypeScore=0.3205;InbreedingCoeff=-0.0116;MQ=59.02;MQ0=0;MQRankSum=-0.193;QD=19.99;ReadPosRankSum=1.878 GT:AD:DP:GQ:PL 0/1:8,8:17:99:207,0,237 0/1:6,4:10:99:116,0,158 0/0:6,0:6:15.04:0,15,174 0/1:10,17:27:99:479,0,254 1/1:0,29:29:87.24:1040,87,0 0/1:10,11:21:99:321,0,244 0/0:14,0:14:39.12:0,39,486 0/1:7,16:23:99:484,0,160 0/0:9,0:9:27.06:0,27,291 0/1:2,11:13:38.13:299,0,38 0/0:10,0:10:27.07:0,27,312 0/0:7,0:7:18.06:0,18,223 0/0:7,0:7:12.03:0,12,146 0/0:8,0:8:21.05:0,21,243 0/0:29,0:29:78.18:0,78,899 0/0:12,0:12:36.11:0,36,429 0/0:12,0:12:33.06:0,33,350 0/0:9,0:9:27.08:0,27,311 0/0:9,0:9:15.05:0,15,192 0/0:23,0:23:57.16:0,57,687 0/1:4,13:17:27.33:394,0,27 0/1:6,5:11:99:119,0,162 0/0:28,0:28:78.23:0,78,979 0/0:10,0:10:27.09:0,27,348 0/0:21,0:21:57.16:0,57,707 0/0:15,0:15:42.12:0,42,499 0/0:11,0:11:27.08:0,27,316 0/0:9,0:9:21.06:0,21,265 0/0:7,0:7:21.06:0,21,241 0/0:10,0:10:24.07:0,24,286 0/0:7,0:7:15.03:0,15,160 0/1:6,5:11:99:144,0,163 0/1:2,4:6:48.05:94,0,48 0/1:3,9:12:54.66:288,0,55 0/0:5,0:5:9.03:0,9,109 0/1:7,9:16:99:247,0,188 0/0:10,0:10:27.08:0,27,313 0/0:17,0:17:45.13:0,45,553 0/0:9,0:9:27.07:0,27,300 0/1:2,6:8:47.26:193,0,47 0/1:4,3:7:84.60:85,0,122 1/1:0,3:3:9.03:110,9,0 19 1036433 . G C 119.55 . 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G A 25227.39 . 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T C 69621.83 . 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C A 892.73 . 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G T 573.17 . 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G A 4894.61 . 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C T 19353.59 . AC=36;AF=0.429;AN=84;BaseQRankSum=12.643;DP=1497;Dels=0.00;FS=22.622;HRun=0;HaplotypeScore=2.4497;InbreedingCoeff=0.0277;MQ=58.30;MQ0=0;MQRankSum=-0.228;QD=18.14;ReadPosRankSum=-1.177 GT:AD:DP:GQ:PL 0/0:20,0:20:51.09:0,51,545 0/1:9,13:22:99:309,0,192 0/1:4,13:17:84.50:368,0,84 0/1:55,31:87:99:793,0,1523 1/1:0,101:101:99:3368,277,0 0/1:27,22:49:99:639,0,691 0/1:25,28:53:99:749,0,649 0/1:26,26:53:99:636,0,677 1/1:0,20:20:51.15:614,51,0 0/1:9,12:21:99:293,0,186 0/1:11,8:19:99:189,0,279 0/0:21,0:21:48.11:0,48,526 0/1:9,9:18:99:214,0,184 0/0:22,0:22:63.14:0,63,691 0/1:32,26:58:99:550,0,790 1/1:0,17:18:45.13:536,45,0 0/1:12,10:22:99:245,0,268 1/1:0,11:12:33.10:392,33,0 1/1:1,41:42:99:1371,114,0 1/1:0,65:66:99:1943,162,0 0/1:21,26:49:99:607,0,478 0/1:15,14:29:99:311,0,347 0/0:115,0:115:99:0,295,3459 0/0:48,0:50:99:0,111,1291 0/1:32,31:64:99:805,0,817 0/1:29,32:62:99:941,0,704 0/1:16,12:28:99:337,0,366 0/1:11,9:20:99:244,0,274 0/0:18,0:18:54.13:0,54,612 0/1:14,11:25:99:308,0,332 0/0:23,0:23:57.11:0,57,633 1/1:0,39:39:99:1234,102,0 1/1:0,28:29:75.23:910,75,0 0/0:11,0:11:30.03:0,30,292 0/0:18,1:19:51.11:0,51,544 0/0:25,0:25:66.14:0,66,728 0/0:45,0:45:99:0,105,1140 0/0:27,0:27:60.09:0,60,662 0/0:20,0:20:54.11:0,54,587 0/1:5,5:10:99:120,0,138 0/0:13,0:14:36.07:0,36,373 0/1:20,14:34:99:326,0,439 19 1055191 . G A 11715.69 . AC=37;AF=0.440;AN=84;BaseQRankSum=-1.322;DP=842;Dels=0.00;FS=2.455;HRun=0;HaplotypeScore=0.5980;InbreedingCoeff=-0.0145;MQ=56.37;MQ0=0;MQRankSum=0.893;QD=20.06;ReadPosRankSum=0.258 GT:AD:DP:GQ:PL 0/0:22,0:22:63.19:0,63,766 0/1:12,9:21:99:263,0,349 0/1:6,2:8:49.88:50,0,196 0/1:17,22:39:99:648,0,480 1/1:0,30:30:87.27:1068,87,0 0/1:4,7:11:99:207,0,135 0/1:5,8:13:99:217,0,142 0/1:15,13:28:99:394,0,447 1/1:0,11:11:30.09:367,30,0 0/1:8,4:12:41.86:42,0,197 0/1:11,8:19:99:229,0,310 0/0:16,0:16:45.13:0,45,529 0/1:7,7:14:99:217,0,226 0/0:26,0:26:78.24:0,78,955 0/1:22,25:47:99:685,0,609 1/1:0,22:22:66.20:784,66,0 0/1:10,8:18:99:223,0,303 1/1:0,14:14:39.12:477,39,0 1/1:0,34:34:96.24:1124,96,0 1/1:0,38:38:99:1289,108,0 0/1:5,9:14:99:293,0,136 0/1:12,11:23:99:293,0,269 0/0:22,0:22:57.17:0,57,713 0/0:17,0:17:45.14:0,45,577 0/1:13,6:19:99:115,0,414 0/1:4,7:11:99:226,0,110 0/1:10,5:15:99:137,0,308 0/1:10,3:13:73.38:73,0,333 0/0:15,0:15:45.13:0,45,541 0/1:6,6:12:99:171,0,164 0/0:11,0:11:33.10:0,33,400 1/1:0,29:29:87.23:1039,87,0 1/1:0,17:17:48.11:540,48,0 0/0:30,0:30:78.22:0,78,938 0/0:22,0:22:66.19:0,66,776 0/0:9,0:9:27.08:0,27,329 0/0:25,0:25:63.17:0,63,721 0/0:18,0:18:51.15:0,51,614 0/0:25,0:25:69.20:0,69,828 0/1:10,7:17:99:208,0,296 0/1:15,2:17:27.41:27,0,467 0/1:8,10:18:99:309,0,223 19 1064193 . G A 6291.18 . AC=58;AF=0.690;AN=84;BaseQRankSum=-7.427;DP=314;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2216;InbreedingCoeff=0.1784;MQ=58.82;MQ0=0;MQRankSum=1.908;QD=24.20;ReadPosRankSum=1.129 GT:AD:DP:GQ:PL 0/0:6,0:6:18.05:0,18,213 0/1:2,2:4:51.62:52,0,66 1/1:0,13:13:36.09:419,36,0 1/1:0,7:7:18.05:219,18,0 1/1:0,8:8:24.07:294,24,0 1/1:0,10:10:21.07:283,21,0 1/1:0,4:4:12.04:143,12,0 1/1:0,12:12:24.05:295,24,0 0/1:3,1:4:25.76:26,0,97 0/1:5,2:7:48.54:49,0,164 1/1:0,3:3:9.03:110,9,0 0/1:1,2:3:28.77:60,0,29 1/1:0,5:5:15.04:169,15,0 0/0:10,0:10:21.06:0,21,269 0/1:6,10:16:99:281,0,182 0/1:5,5:10:99:130,0,156 0/1:3,3:6:68.29:68,0,102 1/1:0,7:7:18.06:230,18,0 1/1:0,16:16:45.13:526,45,0 1/1:0,15:15:39.12:485,39,0 0/1:9,3:12:77.73:78,0,277 0/1:10,5:15:99:113,0,266 1/1:0,8:8:21.06:249,21,0 0/1:3,1:4:25.32:25,0,77 1/1:0,5:5:15.04:167,15,0 0/0:11,0:11:24.08:0,24,335 1/1:0,5:5:12.04:146,12,0 1/1:0,5:5:15.05:185,15,0 1/1:0,7:7:18.05:216,18,0 1/1:0,3:3:6.02:82,6,0 1/1:0,5:5:15.04:174,15,0 1/1:0,7:7:18.05:221,18,0 1/1:0,5:5:15.04:177,15,0 0/1:2,1:3:28.77:29,0,69 0/0:9,1:10:24.07:0,24,299 0/1:2,7:9:34.88:196,0,35 0/0:12,0:12:36.11:0,36,442 0/1:2,5:7:55.31:158,0,55 0/1:3,2:5:64.33:64,0,71 1/1:0,3:3:9.03:108,9,0 0/0:5,0:5:15.05:0,15,188 1/1:0,2:2:6.02:66,6,0 19 1074669 . C A 3.91 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.360;DP=616;Dels=0.00;FS=2.098;HRun=0;HaplotypeScore=0.5645;InbreedingCoeff=-0.0162;MQ=58.69;MQ0=0;MQRankSum=1.052;QD=0.33;ReadPosRankSum=2.118 GT:AD:DP:GQ:PL 0/0:22,0:22:54.15:0,54,666 0/0:9,0:9:18.05:0,18,219 0/0:7,0:7:15.05:0,15,195 0/0:20,1:21:18.91:0,19,607 0/0:23,0:23:51.16:0,51,676 0/0:25,0:25:57.19:0,57,778 0/0:13,0:13:27.06:0,27,344 0/0:11,0:11:27.08:0,27,329 0/0:19,0:19:39.12:0,39,518 0/0:9,0:9:21.04:0,21,217 0/0:9,0:9:21.06:0,21,266 0/0:9,0:9:24.07:0,24,282 0/0:5,0:5:9.01:0,9,112 0/0:8,0:8:18.05:0,18,217 0/0:42,0:42:93.25:0,93,1161 0/0:15,0:15:39.09:0,39,455 0/0:12,0:12:36.10:0,36,413 0/0:6,0:6:18.05:0,18,203 0/0:16,0:16:39.10:0,39,477 0/0:29,0:29:72.18:0,72,856 0/0:22,0:22:48.13:0,48,605 0/0:15,0:15:36.11:0,36,451 0/0:42,0:42:96.29:0,96,1253 0/0:10,0:10:27.08:0,27,335 0/0:25,0:25:60.19:0,60,769 0/0:16,0:16:36.12:0,36,490 0/0:7,0:7:15.04:0,15,186 0/0:13,0:13:36.11:0,36,443 0/0:14,0:14:36.10:0,36,426 0/0:14,0:14:39.10:0,39,446 0/0:6,0:6:15.04:0,15,182 0/0:13,0:13:33.08:0,33,370 0/0:15,0:16:39.11:0,39,455 0/0:12,0:12:30.07:0,30,332 0/0:11,0:11:24.06:0,24,296 0/0:6,0:6:15.04:0,15,185 0/1:10,2:12:47.81:48,0,249 0/0:12,0:12:30.09:0,30,364 0/0:11,0:11:24.07:0,24,306 0/0:11,0:11:33.08:0,33,369 0/0:8,0:8:21.06:0,21,256 0/0:9,0:9:27.07:0,27,306 19 1089492 . A C 148.57 . AC=12;AF=0.143;AN=84;BaseQRankSum=-8.142;DP=977;Dels=0.00;FS=914.096;HRun=2;HaplotypeScore=0.8593;InbreedingCoeff=-0.2067;MQ=58.88;MQ0=0;MQRankSum=-0.380;QD=0.60;ReadPosRankSum=-11.500 GT:AD:DP:GQ:PL 0/0:19,4:23:23.96:0,24,524 0/1:13,3:16:22.94:23,0,322 0/1:14,3:17:20.49:20,0,425 0/0:41,8:49:0:0,0,1321 0/1:25,5:30:44.56:45,0,779 0/0:25,3:28:71.68:0,72,884 0/0:25,2:27:71.69:0,72,831 0/0:24,4:28:5.02:0,5,760 0/0:21,1:22:61.04:0,61,705 0/1:17,2:19:13.25:13,0,539 0/0:23,1:24:69.18:0,69,802 0/1:12,7:19:36.01:36,0,290 0/0:14,1:15:42.13:0,42,510 0/1:12,4:16:28.31:28,0,374 0/1:41,12:53:40.92:41,0,1217 0/1:11,4:15:18.89:19,0,293 0/0:18,1:19:17.16:0,17,561 0/0:16,2:18:14.93:0,15,504 0/0:22,2:24:63.19:0,63,765 0/0:27,3:30:50.60:0,51,852 0/0:32,2:34:86.07:0,86,1014 0/0:18,3:21:26.91:0,27,556 0/0:46,4:50:58.77:0,59,1399 0/0:20,1:21:60.17:0,60,720 0/0:29,3:32:86.60:0,87,1009 0/0:28,2:31:83.03:0,83,959 0/0:18,1:19:51.58:0,52,578 0/0:14,1:15:15.51:0,16,468 0/0:11,2:13:2.48:0,2,314 0/0:13,4:17:1.60:0,2,387 0/1:11,2:13:27.60:28,0,361 0/1:19,2:21:10.32:10,0,590 0/0:14,2:16:37.66:0,38,434 0/0:19,4:23:1.64:3,0,555 0/0:19,0:19:57.18:0,57,697 0/0:21,2:23:32.76:0,33,704 0/0:22,4:26:0.26:0,0,649 0/1:16,3:19:8.90:9,0,508 0/0:26,1:27:43.87:0,44,847 0/1:9,2:11:9.37:9,0,221 0/0:14,2:16:42.11:0,42,494 0/0:15,3:18:43.95:0,44,518 19 1093976 . C T 103.93 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.937;DP=1083;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.0254;InbreedingCoeff=-0.0121;MQ=57.91;MQ0=0;MQRankSum=0.903;QD=5.77;ReadPosRankSum=-1.466 GT:AD:DP:GQ:PL 0/0:16,0:16:36.10:0,36,431 0/0:32,0:32:90.24:0,90,1046 0/0:22,0:22:66.19:0,66,772 0/0:33,0:33:96.29:0,96,1202 0/0:49,0:49:99:0,132,1679 0/0:29,0:29:81.25:0,81,1019 0/1:11,7:18:99:150,0,337 0/0:21,0:21:60.18:0,60,733 0/0:16,0:16:42.10:0,42,483 0/0:20,0:20:54.16:0,54,641 0/0:17,0:17:39.11:0,39,472 0/0:18,0:18:51.14:0,51,593 0/0:18,0:18:42.10:0,42,470 0/0:22,0:22:66.18:0,66,782 0/0:70,0:70:99:0,181,2186 0/0:24,0:24:66.20:0,66,807 0/0:22,0:22:60.16:0,60,701 0/0:21,0:21:54.15:0,54,631 0/0:32,0:32:78.18:0,78,906 0/0:29,0:29:78.21:0,78,928 0/0:25,0:25:72.19:0,72,811 0/0:19,0:19:51.15:0,51,607 0/0:46,0:46:99:0,129,1542 0/0:20,0:20:60.19:0,60,756 0/0:29,0:29:78.24:0,78,1009 0/0:33,0:33:93.28:0,93,1173 0/0:27,0:27:66.19:0,66,799 0/0:26,1:27:44.61:0,45,835 0/0:20,0:21:54.16:0,54,640 0/0:20,0:20:51.16:0,51,632 0/0:29,0:29:78.21:0,78,901 0/0:28,0:28:72.19:0,72,850 0/0:24,0:24:66.16:0,66,763 0/0:27,0:27:75.19:0,75,873 0/0:27,0:27:75.20:0,75,889 0/0:20,0:21:54.14:0,54,637 0/0:26,0:26:69.18:0,69,792 0/0:25,0:25:66.18:0,66,764 0/0:23,0:23:69.18:0,69,811 0/0:19,0:19:48.13:0,48,565 0/0:15,0:15:42.09:0,42,476 0/0:23,0:23:57.11:0,57,652 19 1093979 . C A 1259.80 . AC=4;AF=0.048;AN=84;BaseQRankSum=-5.616;DP=1086;Dels=0.00;FS=0.591;HRun=0;HaplotypeScore=0.8908;InbreedingCoeff=-0.0500;MQ=57.87;MQ0=0;MQRankSum=-0.028;QD=13.84;ReadPosRankSum=2.447 GT:AD:DP:GQ:PL 0/0:16,0:16:42.13:0,42,507 0/0:30,0:30:81.26:0,81,1021 0/0:20,0:20:54.16:0,54,658 0/0:34,0:34:99:0,99,1291 0/0:48,0:48:99:0,132,1706 0/0:29,0:29:81.23:0,81,1011 0/0:15,0:15:39.13:0,39,512 0/0:20,0:20:54.17:0,54,714 0/1:11,5:16:99:131,0,256 0/1:12,8:20:99:213,0,381 0/0:18,0:18:48.14:0,48,601 0/0:18,0:18:54.14:0,54,649 0/0:18,0:18:48.10:0,48,547 0/0:22,0:22:66.21:0,66,822 0/0:67,0:67:99:0,184,2217 0/1:7,15:22:99:477,0,119 0/0:24,0:24:69.21:0,69,851 0/0:22,0:22:60.18:0,60,738 0/0:38,0:38:99:0,99,1161 0/0:31,0:31:87.27:0,87,1087 0/0:26,0:26:72.18:0,72,844 0/0:19,0:19:48.15:0,48,607 0/0:44,0:44:99:0,120,1532 0/0:20,0:20:60.20:0,60,794 0/0:29,0:29:78.24:0,78,1017 0/1:13,20:33:99:525,0,390 0/0:24,0:24:60.18:0,60,740 0/0:29,0:29:75.21:0,75,911 0/0:22,0:22:63.18:0,63,748 0/0:20,0:20:54.17:0,54,680 0/0:30,0:30:84.23:0,84,1006 0/0:31,0:31:81.25:0,81,1010 0/0:21,0:21:60.14:0,60,717 0/0:26,0:26:66.16:0,66,807 0/0:26,0:26:72.19:0,72,867 0/0:20,0:20:60.16:0,60,699 0/0:29,0:29:81.23:0,81,962 0/0:27,0:27:78.20:0,78,921 0/0:22,0:23:60.19:0,60,758 0/0:22,0:22:57.16:0,57,694 0/0:15,0:15:36.11:0,36,433 0/0:22,0:22:54.16:0,54,665 19 1094004 . G A 33844.57 . AC=84;AF=1.000;AN=84;DP=1055;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.8806;InbreedingCoeff=-0.0000;MQ=58.46;MQ0=0;QD=32.08 GT:AD:DP:GQ:PL 1/1:0,15:15:42.10:468,42,0 1/1:0,22:22:63.18:746,63,0 1/1:0,17:17:48.14:573,48,0 1/1:0,40:40:99:1274,108,0 1/1:0,42:42:99:1321,114,0 1/1:0,30:30:81.25:1022,81,0 1/1:0,21:21:57.17:698,57,0 1/1:0,28:28:75.18:883,75,0 1/1:0,13:14:33.10:393,33,0 1/1:0,14:14:39.10:455,39,0 1/1:0,18:18:51.14:598,51,0 1/1:0,19:19:54.16:640,54,0 1/1:0,15:15:45.12:517,45,0 1/1:0,21:21:45.14:545,45,0 1/1:0,64:64:99:2071,178,0 1/1:0,16:16:45.13:520,45,0 1/1:0,20:20:57.17:682,57,0 1/1:0,21:21:60.18:723,60,0 1/1:0,32:32:90.25:1072,90,0 1/1:0,29:29:78.17:899,78,0 1/1:0,29:29:78.24:960,78,0 1/1:0,21:21:63.19:757,63,0 1/1:0,40:40:99:1247,105,0 1/1:0,19:19:48.15:617,48,0 1/1:0,31:31:81.22:962,81,0 1/1:0,37:37:99:1263,102,0 1/1:0,22:22:51.15:598,51,0 1/1:0,26:26:69.19:799,69,0 1/1:0,23:23:66.16:773,66,0 1/1:0,20:20:48.13:568,48,0 1/1:0,32:32:81.21:928,81,0 1/1:0,35:35:93.25:1118,93,0 1/1:0,25:25:66.20:809,66,0 1/1:0,23:23:69.19:804,69,0 1/1:0,19:19:48.15:589,48,0 1/1:0,19:20:54.16:655,54,0 1/1:0,24:24:66.20:804,66,0 1/1:0,20:20:54.16:639,54,0 1/1:0,21:21:54.14:630,54,0 1/1:0,26:26:69.19:826,69,0 1/1:0,18:18:51.15:595,51,0 1/1:0,26:26:66.19:805,66,0 19 1110829 . G A 26853.15 . AC=31;AF=0.369;AN=84;BaseQRankSum=4.463;DP=2695;Dels=0.00;FS=21.490;HRun=0;HaplotypeScore=1.2702;InbreedingCoeff=0.1309;MQ=59.24;MQ0=0;MQRankSum=-0.483;QD=18.44;ReadPosRankSum=-1.653 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1602,135,0 0/1:31,20:51:99:552,0,840 0/0:50,0:50:99:0,138,1623 0/0:129,1:130:99:0,319,4302 0/0:104,0:104:99:0,292,3574 0/0:97,0:97:99:0,250,3132 0/0:65,1:66:99:0,142,2124 0/1:43,24:68:99:620,0,1296 0/1:24,21:45:99:617,0,613 0/0:41,0:41:99:0,120,1358 1/1:0,47:47:99:1548,129,0 0/0:57,0:57:99:0,153,1785 0/0:24,1:25:38.22:0,38,758 0/0:59,0:59:99:0,153,1846 0/1:75,98:173:99:2594,0,1812 0/0:50,0:50:99:0,141,1613 0/1:20,24:44:99:701,0,522 0/0:35,0:35:99:0,102,1151 0/0:68,0:70:99:0,177,2067 0/0:133,0:133:99:0,352,4096 0/0:87,0:88:99:0,229,2593 0/0:50,0:50:99:0,141,1613 0/1:52,59:111:99:1657,0,1608 0/0:57,0:57:99:0,165,2029 0/1:35,39:75:99:1070,0,989 0/0:64,1:65:99:0,146,2206 1/1:0,42:42:99:1241,99,0 1/1:0,51:52:99:1705,141,0 1/1:0,43:43:99:1324,108,0 0/1:21,20:41:99:546,0,566 0/1:29,24:53:99:695,0,707 0/1:42,45:87:99:1198,0,1063 0/0:62,0:62:99:0,174,2016 0/1:28,30:58:99:818,0,695 0/1:24,24:48:99:701,0,624 0/1:27,29:56:99:874,0,683 1/1:0,90:90:99:2873,241,0 0/1:20,28:48:99:725,0,518 0/1:21,22:43:99:662,0,508 0/1:29,23:52:99:664,0,707 1/1:0,46:46:99:1533,126,0 0/1:21,13:34:99:334,0,574 19 1235878 . C A 2529.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.615;DP=3568;Dels=0.00;FS=1.187;HRun=1;HaplotypeScore=2.6272;InbreedingCoeff=-0.0244;MQ=58.96;MQ0=0;MQRankSum=1.500;QD=11.82;ReadPosRankSum=1.073 GT:AD:DP:GQ:PL 0/0:48,1:49:98.05:0,98,1567 0/0:47,0:47:99:0,126,1530 0/0:51,0:51:99:0,141,1738 0/0:184,0:185:99:0,475,6177 0/0:154,0:154:99:0,409,5473 0/0:124,0:124:99:0,316,4190 0/0:106,0:106:99:0,274,3685 0/0:109,0:109:99:0,277,3644 0/0:66,0:66:99:0,172,2164 0/0:63,1:64:99:0,134,2039 0/0:41,0:41:99:0,108,1331 0/0:55,0:55:99:0,150,1866 0/0:47,0:47:99:0,123,1498 0/0:65,0:65:99:0,169,2119 0/0:224,1:225:99:0,517,6516 0/0:60,0:60:99:0,165,1987 0/0:53,0:53:99:0,138,1696 0/0:55,1:56:99:0,141,1762 0/0:110,0:110:99:0,283,3418 0/0:134,0:134:99:0,328,4156 0/1:80,57:137:99:1405,0,2137 0/1:32,45:77:99:1188,0,829 0/0:209,0:209:99:0,536,7119 0/0:104,0:104:99:0,262,3513 0/0:113,0:113:99:0,280,3691 0/0:90,0:90:99:0,235,3133 0/0:44,0:44:99:0,117,1465 0/0:56,0:56:99:0,141,1761 0/0:46,0:46:99:0,120,1477 0/0:53,0:53:99:0,141,1779 0/0:43,0:43:99:0,117,1437 0/0:126,0:126:99:0,295,3731 0/0:73,0:73:99:0,190,2433 0/0:35,0:35:90.28:0,90,1122 0/0:55,0:55:99:0,138,1733 0/0:64,0:64:99:0,172,2128 0/0:168,0:168:99:0,412,5121 0/0:55,0:55:99:0,150,1858 0/0:67,0:67:99:0,181,2271 0/0:55,0:55:99:0,144,1837 0/0:49,0:49:99:0,123,1563 0/0:48,0:48:99:0,129,1586 19 1236045 . CAGTGGT C 666.60 . AC=6;AF=0.071;AN=84;BaseQRankSum=6.034;DP=656;FS=7.460;HRun=0;HaplotypeScore=88.3978;InbreedingCoeff=-0.0796;MQ=57.98;MQ0=0;MQRankSum=1.421;QD=10.26;ReadPosRankSum=-0.746 GT:AD:DP:GQ:PL 0/0:7,0:7:18.05:0,18,513 0/0:10,0:10:24.05:0,24,641 0/0:7,0:7:21.06:0,21,484 0/0:26,0:26:78.23:0,78,1869 0/0:24,0:24:72.20:0,72,2082 0/0:17,0:16:48.15:0,48,1112 0/0:12,0:12:36.11:0,36,837 0/0:15,0:14:45.10:0,45,997 0/1:3,4:7:99:125,0,159 0/0:14,0:14:39.10:0,39,1054 0/1:2,2:4:99:124,0,125 0/0:9,0:9:24.07:0,24,583 0/0:9,0:9:27.08:0,27,897 0/0:11,0:11:30.05:0,30,676 0/0:62,0:62:99:0,174,4112 0/0:21,0:21:57.04:0,57,1059 0/0:13,0:13:9.13:0,9,934 0/0:16,0:16:42.12:0,42,878 0/0:23,0:23:63.16:0,63,1367 0/0:25,0:25:72.13:0,72,1634 0/0:26,0:26:72.97:0,73,1645 0/0:17,0:17:48.14:0,48,1238 0/0:30,0:30:87.25:0,87,2038 0/0:13,0:13:39.13:0,39,1123 0/0:11,0:11:33.10:0,33,834 0/0:10,0:9:30.09:0,30,766 0/0:11,0:11:33.09:0,33,811 0/0:4,0:4:12.03:0,12,212 0/0:13,0:13:36.09:0,36,800 0/0:11,0:11:33.09:0,33,629 0/0:14,0:14:41.93:0,42,819 0/0:23,0:23:66.19:0,66,1720 0/0:29,0:29:84.18:0,84,1152 0/1:2,4:6:31.95:150,0,32 0/1:7,4:12:99:146,0,456 0/0:12,0:12:36.10:0,36,789 0/0:14,0:14:36.12:0,36,1110 0/0:11,0:11:33.10:0,33,817 0/0:8,0:8:24.07:0,24,553 0/1:15,1:16:99:156,0,502 0/1:17,3:20:80.53:81,0,806 0/0:13,0:13:39.09:0,39,865 19 1236046 . A G 53.35 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.888;DP=656;Dels=0.03;FS=12.921;HRun=1;HaplotypeScore=4.2957;InbreedingCoeff=-0.0258;MQ=57.98;MQ0=0;MQRankSum=0.155;QD=3.33;ReadPosRankSum=-2.367 GT:AD:DP:GQ:PL 0/0:7,0:7:15.05:0,15,189 0/0:9,0:10:24.07:0,24,283 0/0:7,0:7:21.06:0,21,251 0/0:25,1:26:75.20:0,75,900 0/0:24,0:24:72.21:0,72,871 0/0:16,1:17:45.14:0,45,573 0/0:12,0:12:33.10:0,33,416 0/0:14,1:15:36.10:0,36,438 0/0:3,0:3:6.02:0,6,83 0/0:14,0:14:39.12:0,39,470 0/0:2,0:2:6.02:0,6,71 0/0:9,0:9:21.06:0,21,256 0/0:9,0:9:24.07:0,24,289 0/0:11,0:11:30.05:0,30,321 0/0:62,0:62:99:0,147,1815 0/0:21,0:21:51.13:0,51,604 0/0:12,1:13:4.76:0,5,399 0/0:15,1:16:39.12:0,39,491 0/0:22,0:23:63.18:0,63,765 0/0:25,0:25:66.20:0,66,808 0/0:25,1:26:66.14:0,66,786 0/0:17,0:17:45.11:0,45,533 0/0:30,0:30:87.27:0,87,1079 0/0:13,0:13:39.12:0,39,485 0/0:11,0:11:30.09:0,30,374 0/0:10,0:10:27.08:0,27,331 0/0:11,0:11:30.10:0,30,380 0/0:4,0:4:12.04:0,12,143 0/0:13,0:13:30.09:0,30,381 0/0:11,0:11:33.09:0,33,388 0/0:14,0:14:36.10:0,36,434 0/0:23,0:23:63.19:0,63,760 0/0:29,0:29:81.23:0,81,944 0/0:2,0:2:3.01:0,3,39 0/0:7,0:7:21.05:0,21,238 0/0:12,0:12:33.10:0,33,409 0/0:14,0:14:36.11:0,36,437 0/0:11,0:11:30.10:0,30,383 0/0:8,0:8:24.07:0,24,287 0/1:10,5:15:99:99,0,305 0/0:17,0:17:42.12:0,42,518 0/0:13,0:13:33.10:0,33,398 19 1236046 . AGTG A 158.01 . AC=12;AF=0.143;AN=84;BaseQRankSum=6.233;DP=633;FS=0.000;HRun=0;HaplotypeScore=59.5700;InbreedingCoeff=-0.1984;MQ=57.99;MQ0=0;MQRankSum=-0.349;QD=0.76;ReadPosRankSum=1.666 GT:AD:DP:GQ:PL 0/0:7,0:7:12.04:0,12,244 0/0:9,0:9:15.05:0,15,274 0/1:6,1:7:30.94:31,0,142 0/1:23,2:25:40.81:41,0,690 0/0:25,0:25:54.17:0,54,1034 0/1:15,1:15:16.07:16,0,351 0/0:11,0:11:18.03:0,18,270 0/0:14,0:14:21.06:0,21,333 0/0:7,0:7:4.21:0,4,85 0/0:12,0:12:24.07:0,24,426 0/1:5,0:5:14.86:15,0,46 0/0:8,0:8:15.04:0,15,242 0/0:9,0:9:24.08:0,24,483 0/0:10,0:10:18.06:0,18,320 0/1:57,3:60:13.60:14,0,1529 0/1:19,2:21:58.85:59,0,385 0/0:13,0:13:21.07:0,21,363 0/0:15,0:15:15.05:0,15,275 0/0:23,0:23:27.08:0,27,482 0/0:24,0:24:33.10:0,33,557 0/0:24,1:25:0.90:6,0,636 0/0:16,0:16:27.09:0,27,546 0/0:26,1:27:2.17:0,2,740 0/0:13,0:13:27.08:0,27,455 0/0:11,0:11:18.06:0,18,335 0/1:9,1:9:21.92:22,0,315 0/0:11,0:11:18.06:0,18,336 0/0:4,0:4:3.01:0,3,32 0/0:12,0:12:15.05:0,15,277 0/1:10,1:11:30.93:31,0,171 0/0:12,0:12:15.05:0,15,305 0/0:21,0:21:39.12:0,39,729 0/0:30,0:30:15.04:0,15,250 0/1:6,0:6:14.95:15,0,20 0/1:12,0:12:23.90:24,0,199 0/0:12,0:12:15.05:0,15,305 0/0:14,0:14:33.10:0,33,549 0/0:11,0:11:15.05:0,15,274 0/0:8,0:8:12.04:0,12,217 0/1:15,0:15:8.45:8,0,172 0/1:19,0:19:26.61:27,0,192 0/0:12,0:12:18.06:0,18,366 19 1357082 . T C 79657.41 . AC=71;AF=0.845;AN=84;BaseQRankSum=17.886;DP=2930;Dels=0.00;FS=2.541;HRun=1;HaplotypeScore=1.1767;InbreedingCoeff=-0.0011;MQ=59.50;MQ0=0;MQRankSum=-0.041;QD=27.84;ReadPosRankSum=-0.645 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1921,147,0 0/1:37,27:64:99:756,0,1012 0/1:24,30:54:99:839,0,638 1/1:0,106:106:99:3656,271,0 0/1:44,38:83:99:1072,0,1266 1/1:0,103:103:99:3687,274,0 1/1:1,95:96:99:3255,222,0 1/1:0,108:108:99:3879,283,0 1/1:0,56:56:99:1894,144,0 1/1:0,51:51:99:1689,129,0 1/1:0,64:64:99:2226,172,0 1/1:0,51:51:99:1831,141,0 1/1:1,51:52:86.41:1541,86,0 1/1:0,43:43:99:1547,126,0 0/1:115,86:201:99:2420,0,3073 1/1:0,48:48:99:1634,129,0 0/0:68,1:69:99:0,149,2266 1/1:0,49:49:99:1653,126,0 1/1:0,71:71:99:2286,184,0 1/1:0,87:87:99:2955,229,0 0/1:36,28:64:99:729,0,977 1/1:0,40:40:99:1355,102,0 1/1:0,134:134:99:4854,355,0 0/1:51,37:88:99:1105,0,1390 0/1:43,46:89:99:1439,0,1205 1/1:0,78:78:99:2829,211,0 1/1:0,46:46:99:1509,114,0 1/1:0,61:62:99:2056,160,0 1/1:0,55:55:99:1978,153,0 1/1:0,61:61:99:2053,160,0 0/1:34,25:59:99:674,0,1024 0/1:30,37:67:99:1068,0,789 1/1:0,52:52:99:1825,141,0 1/1:0,62:62:99:2091,163,0 1/1:0,65:66:99:2316,181,0 1/1:0,55:55:99:2000,156,0 1/1:0,51:51:99:1602,129,0 1/1:0,65:65:99:2257,178,0 1/1:0,55:55:99:1772,138,0 1/1:0,51:51:99:1849,144,0 0/1:25,30:55:99:851,0,691 0/1:33,25:58:99:706,0,923 19 1432574 . T C 6911.02 . AC=41;AF=0.488;AN=84;BaseQRankSum=-21.176;DP=3340;DS;Dels=0.00;FS=2410.305;HRun=2;HaplotypeScore=2.4947;InbreedingCoeff=-0.9554;MQ=57.32;MQ0=0;MQRankSum=-1.779;QD=2.10;ReadPosRankSum=-24.430 GT:AD:DP:GQ:PL 0/1:33,16:49:99:189,0,971 0/1:38,12:50:54.33:54,0,1199 0/1:32,15:47:99:103,0,954 0/1:100,43:143:99:309,0,3245 0/1:99,37:136:99:132,0,3247 0/1:93,40:133:99:212,0,2999 0/1:91,30:121:99:154,0,2903 0/1:76,41:117:99:199,0,2427 0/1:33,15:48:99:236,0,964 0/1:30,13:43:17.51:18,0,910 0/1:41,17:58:99:110,0,1341 0/1:31,24:55:99:311,0,929 0/1:37,17:54:99:256,0,1151 0/1:45,18:63:90.94:91,0,1467 0/1:136,47:183:55.08:55,0,4222 0/1:43,16:59:99:149,0,1332 0/1:47,19:66:47.30:47,0,1321 0/1:30,10:40:99:131,0,876 0/1:89,26:115:99:131,0,2855 0/1:71,48:120:99:316,0,2152 0/1:81,37:118:99:314,0,2549 0/1:54,23:77:99:182,0,1695 0/1:126,50:176:99:421,0,4024 0/1:84,34:118:99:192,0,2514 0/1:97,36:133:67.64:68,0,3073 0/1:70,29:99:99:132,0,2272 0/1:33,15:48:99:161,0,1062 0/1:32,8:40:28.06:28,0,1039 0/1:27,12:39:99:180,0,886 0/1:30,12:42:69.83:70,0,942 0/1:30,13:43:99:211,0,863 0/1:75,32:107:99:268,0,2225 0/1:59,27:86:99:190,0,1766 0/1:24,11:35:99:147,0,756 0/1:49,19:68:99:204,0,1596 0/1:38,12:51:99:118,0,1182 0/1:79,29:109:99:154,0,2305 0/1:43,19:62:99:289,0,1356 0/1:37,13:50:83.15:83,0,1205 0/1:37,16:53:99:193,0,1157 0/1:33,11:44:99:104,0,1028 0/0:36,6:42:11.79:0,12,1189 19 1432577 . A C 17255.12 . AC=42;AF=0.500;AN=84;BaseQRankSum=-14.906;DP=3347;DS;Dels=0.00;FS=3200.000;HRun=2;HaplotypeScore=2.5161;InbreedingCoeff=-1.0000;MQ=57.34;MQ0=0;MQRankSum=-2.266;QD=5.16;ReadPosRankSum=-20.917 GT:AD:DP:GQ:PL 0/1:31,16:47:99:298,0,953 0/1:38,15:53:99:169,0,1146 0/1:32,15:47:99:257,0,906 0/1:101,53:154:99:804,0,3088 0/1:101,39:140:99:716,0,3127 0/1:79,49:128:99:730,0,2434 0/1:83,37:121:99:456,0,2501 0/1:70,47:117:99:860,0,2084 0/1:29,19:48:99:348,0,887 0/1:24,15:39:99:185,0,671 0/1:37,20:57:99:356,0,1097 0/1:31,24:55:99:467,0,874 0/1:37,20:57:99:200,0,1146 0/1:41,22:63:99:371,0,1152 0/1:132,53:185:99:571,0,3785 0/1:36,17:53:99:234,0,1053 0/1:43,22:66:99:223,0,1159 0/1:24,12:36:99:150,0,712 0/1:80,39:119:99:490,0,2433 0/1:70,59:129:99:983,0,1777 0/1:69,42:111:99:681,0,2021 0/1:45,24:70:99:457,0,1280 0/1:123,61:185:99:885,0,3814 0/1:76,43:119:99:637,0,2350 0/1:89,45:134:99:681,0,2621 0/1:67,32:99:99:448,0,1957 0/1:29,17:46:99:362,0,860 0/1:27,11:38:99:116,0,812 0/1:29,13:42:99:164,0,909 0/1:31,15:46:99:134,0,924 0/1:29,15:44:99:240,0,847 0/1:69,39:108:99:550,0,1922 0/1:50,33:83:99:622,0,1489 0/1:23,14:37:99:271,0,687 0/1:43,22:65:99:404,0,1301 0/1:35,14:49:99:149,0,971 0/1:76,34:110:99:497,0,2183 0/1:38,24:62:99:454,0,1062 0/1:39,14:54:90.41:90,0,1147 0/1:32,18:50:99:338,0,1015 0/1:26,11:37:87.18:87,0,810 0/1:34,10:44:99:119,0,1081 19 1478888 . T G 71.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.071;DP=441;Dels=0.00;FS=5.184;HRun=1;HaplotypeScore=0.4756;InbreedingCoeff=-0.0460;MQ=58.70;MQ0=0;MQRankSum=1.448;QD=11.98;ReadPosRankSum=0.036 GT:AD:DP:GQ:PL 0/0:5,0:5:12.03:0,12,136 0/1:1,2:3:24.41:66,0,24 0/1:1,2:3:27.95:68,0,28 0/0:43,0:43:99:0,99,1248 0/0:18,1:19:48.15:0,48,598 0/0:15,0:15:39.12:0,39,493 0/0:14,0:14:33.11:0,33,427 0/0:16,0:16:36.11:0,36,459 0/0:8,0:8:18.06:0,18,223 0/0:6,0:6:12.04:0,12,152 0/0:4,0:4:12.04:0,12,141 0/0:7,0:7:18.06:0,18,217 0/0:2,0:2:6.02:0,6,73 0/0:9,0:9:21.06:0,21,254 0/0:18,0:18:48.15:0,48,594 0/0:12,0:12:30.08:0,30,360 0/0:5,0:5:9.03:0,9,126 0/0:5,0:5:12.01:0,12,132 0/0:8,0:8:21.06:0,21,259 0/0:24,0:24:48.15:0,48,636 0/0:8,0:8:24.08:0,24,295 0/0:7,0:7:18.04:0,18,200 0/0:50,0:50:99:0,108,1410 0/0:18,0:18:45.12:0,45,539 0/0:17,0:17:33.11:0,33,449 0/0:8,0:8:21.04:0,21,251 0/0:1,0:1:3.01:0,3,35 0/0:2,0:2:6.02:0,6,73 0/0:5,0:5:9.03:0,9,114 0/0:4,0:4:9.03:0,9,108 0/0:9,0:10:27.08:0,27,314 0/0:14,0:14:33.10:0,33,424 0/0:8,0:8:24.06:0,24,267 0/0:7,0:7:21.07:0,21,259 0/0:9,0:9:27.07:0,27,312 0/0:6,0:6:15.05:0,15,184 0/0:15,0:15:39.12:0,39,485 0/0:9,0:9:24.08:0,24,303 0/0:4,0:4:12.04:0,12,144 0/0:5,0:5:12.04:0,12,156 0/0:5,0:5:15.03:0,15,166 0/0:3,0:3:3.01:0,3,45 19 1507585 . C A 304.67 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.138;DP=1937;Dels=0.00;FS=4.414;HRun=0;HaplotypeScore=1.5852;InbreedingCoeff=-0.0120;MQ=58.88;MQ0=1;MQRankSum=-0.466;QD=11.28;ReadPosRankSum=0.287 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,117,1281 0/0:26,0:26:75.17:0,75,817 0/0:27,0:27:75.17:0,75,823 0/0:90,0:90:99:0,226,2722 0/0:79,0:79:99:0,223,2670 0/0:53,0:53:99:0,123,1512 0/0:58,0:58:99:0,147,1807 0/0:61,0:61:99:0,159,1921 0/0:24,0:24:69.19:0,69,782 0/1:15,12:27:99:351,0,330 0/0:31,0:31:87.22:0,87,968 0/0:30,0:30:84.19:0,84,918 0/0:20,0:20:60.15:0,60,650 0/0:29,0:29:81.21:0,81,909 0/0:122,0:122:99:0,325,3611 0/0:35,0:35:87.23:0,87,983 0/0:25,0:25:66.17:0,66,750 0/0:28,0:29:78.21:0,78,888 0/0:56,1:57:99:0,150,1700 0/0:98,0:98:99:0,238,2752 0/0:64,0:64:99:0,183,2044 0/0:58,0:58:99:0,162,1822 0/0:111,0:111:99:0,298,3555 0/0:48,0:48:99:0,117,1381 0/0:71,0:71:99:0,171,2089 0/0:49,0:49:99:0,129,1522 0/0:22,0:22:63.16:0,63,704 0/0:31,0:31:90.24:0,90,1016 0/0:26,0:26:75.20:0,75,845 0/0:41,0:41:99:0,120,1321 0/0:29,0:29:72.17:0,72,799 0/0:75,0:75:99:0,202,2305 0/0:51,0:51:99:0,144,1594 0/0:24,0:24:69.19:0,69,802 0/0:27,0:27:75.16:0,75,819 0/0:34,0:34:90.21:0,90,978 0/0:53,0:53:99:0,150,1640 0/0:45,0:45:99:0,117,1290 0/0:25,0:25:66.17:0,66,743 0/0:40,0:40:99:0,111,1198 0/0:21,0:21:60.15:0,60,650 0/0:29,0:29:72.19:0,72,806 19 1507622 . T C 551.40 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.100;DP=1849;Dels=0.00;FS=0.971;HRun=2;HaplotypeScore=1.5769;InbreedingCoeff=-0.0244;MQ=58.96;MQ0=0;MQRankSum=-1.020;QD=10.60;ReadPosRankSum=0.072 GT:AD:DP:GQ:PL 0/0:32,0:32:93.29:0,93,1134 0/0:27,0:27:75.23:0,75,903 0/0:32,0:32:90.26:0,90,1072 0/0:91,0:91:99:0,259,3104 0/0:79,0:79:99:0,226,2751 0/0:47,1:48:99:0,129,1638 0/0:55,0:55:99:0,159,1931 0/0:60,0:60:99:0,175,2143 0/1:15,12:27:99:276,0,442 0/1:12,13:25:99:338,0,344 0/0:32,0:32:93.26:0,93,1095 0/0:28,0:28:81.23:0,81,950 0/0:24,0:24:69.21:0,69,817 0/0:34,0:34:90.26:0,90,1098 0/0:104,0:104:99:0,283,3374 0/0:33,0:33:90.26:0,90,1066 0/0:26,0:26:60.19:0,60,765 0/0:9,0:9:27.08:0,27,313 0/0:62,0:62:99:0,178,2117 0/0:96,0:96:99:0,268,3178 0/0:68,0:69:99:0,190,2289 0/0:39,0:39:99:0,108,1289 0/0:105,0:105:99:0,292,3541 0/0:42,0:42:99:0,120,1466 0/0:58,0:58:99:0,162,1972 0/0:54,0:54:99:0,150,1829 0/0:26,0:26:60.18:0,60,738 0/0:33,0:33:99:0,99,1175 0/0:27,0:27:69.19:0,69,810 0/0:43,0:43:99:0,105,1291 0/0:27,0:27:81.25:0,81,973 0/0:85,0:85:99:0,226,2717 0/0:46,0:46:99:0,132,1577 0/0:23,0:23:63.19:0,63,767 0/0:28,0:28:78.21:0,78,907 0/0:35,0:35:99:0,99,1183 0/0:48,0:50:99:0,138,1614 0/0:27,0:27:75.23:0,75,901 0/0:25,0:26:72.22:0,72,876 0/0:36,0:36:99:0,105,1259 0/0:17,0:17:48.14:0,48,578 0/0:28,0:28:78.23:0,78,939 19 1796166 . C T 8254.15 . AC=14;AF=0.167;AN=84;BaseQRankSum=12.652;DP=2000;Dels=0.00;FS=0.579;HRun=0;HaplotypeScore=1.6389;InbreedingCoeff=-0.0286;MQ=59.16;MQ0=0;MQRankSum=0.835;QD=15.43;ReadPosRankSum=-0.514 GT:AD:DP:GQ:PL 0/1:24,12:36:99:273,0,608 0/0:37,0:37:93.22:0,93,1011 0/0:35,0:35:99:0,102,1111 0/0:102,0:102:99:0,280,3290 0/0:74,0:75:99:0,205,2414 0/0:67,0:67:99:0,168,2039 0/0:35,0:35:93.25:0,93,1094 0/0:46,0:46:99:0,123,1442 0/1:20,25:45:99:720,0,466 0/1:13,14:27:99:368,0,318 0/0:29,0:29:84.19:0,84,904 0/1:19,19:38:99:553,0,471 1/1:0,27:27:75.23:911,75,0 0/1:22,21:43:99:606,0,550 0/0:142,0:142:99:0,361,4047 0/0:39,1:40:99:0,111,1220 0/0:36,0:36:99:0,99,1068 0/0:37,0:37:99:0,102,1111 0/0:70,0:71:99:0,198,2115 0/0:83,0:83:99:0,211,2352 0/1:32,43:75:99:1216,0,729 0/1:23,26:49:99:734,0,548 0/0:107,0:107:99:0,289,3439 0/0:31,0:31:81.24:0,81,956 0/0:62,0:62:99:0,159,1908 0/1:17,25:42:99:759,0,420 0/0:24,0:24:66.15:0,66,725 0/0:32,0:32:87.22:0,87,974 0/0:39,0:39:99:0,111,1236 0/0:34,0:34:99:0,99,1048 0/0:35,0:35:93.24:0,93,1033 0/0:48,0:48:99:0,132,1487 0/0:47,1:48:95.71:0,96,1327 0/1:28,23:51:99:646,0,702 0/1:10,12:22:99:353,0,245 0/0:54,0:54:99:0,150,1638 0/1:26,26:52:99:693,0,654 0/0:37,0:37:99:0,108,1173 0/1:13,15:28:99:423,0,334 0/0:25,0:25:72.15:0,72,751 0/0:28,0:28:75.19:0,75,822 0/0:26,0:26:78.17:0,78,820 19 1818775 . G T 106.18 . AC=12;AF=0.143;AN=84;BaseQRankSum=-9.361;DP=861;Dels=0.00;FS=328.417;HRun=1;HaplotypeScore=0.9891;InbreedingCoeff=-0.2000;MQ=55.43;MQ0=28;MQRankSum=0.762;QD=0.50;ReadPosRankSum=-7.993 GT:AD:DP:GQ:PL 0/1:13,4:17:19.19:19,0,318 0/1:20,5:25:35.60:36,0,489 0/0:12,3:15:1.49:4,0,327 0/0:45,6:51:58.77:0,59,1415 0/0:28,0:28:69.20:0,69,876 0/0:21,7:28:31.49:0,31,696 0/0:21,3:24:60.15:0,60,760 0/0:20,4:24:54.10:0,54,645 0/0:10,0:10:18.05:0,18,218 0/0:9,2:11:18.04:0,18,201 0/1:13,2:15:6.82:7,0,285 0/0:11,1:12:11.39:0,11,329 0/0:8,3:11:15.05:0,15,183 0/1:6,2:8:41.03:41,0,152 0/0:42,11:53:44.44:0,44,1051 0/0:8,1:10:12.03:0,12,143 0/0:18,4:22:6.48:0,6,374 0/0:9,0:9:18.04:0,18,206 0/1:31,5:36:29.81:30,0,637 0/0:34,3:37:88.25:0,88,1003 0/0:30,3:33:63.14:0,63,732 0/1:14,7:21:7.31:7,0,361 0/0:37,9:46:21.91:0,22,1097 0/0:15,4:19:39.02:0,39,490 0/0:18,1:19:42.13:0,42,552 0/0:35,2:37:84.10:0,84,1071 0/0:9,0:9:27.05:0,27,290 0/0:10,3:13:2.83:0,0,248 0/0:12,1:13:24.07:0,24,299 0/1:8,3:11:12.08:12,0,219 0/0:11,2:13:30.09:0,30,362 0/0:34,1:35:93.26:0,93,1117 0/0:16,1:17:2.43:1,0,338 0/0:8,2:10:0.19:0,0,233 0/1:6,6:12:11.44:11,0,203 0/1:22,5:27:9.18:9,0,519 0/0:14,4:18:33.09:0,33,393 0/1:8,1:9:8.56:9,0,201 0/1:8,4:12:23.15:23,0,259 0/0:12,2:14:27.07:0,27,318 0/0:8,1:9:21.07:0,21,268 0/1:16,2:18:30.52:31,0,326 19 1819125 . T C 3946.49 . AC=8;AF=0.095;AN=84;BaseQRankSum=-7.129;DP=1561;Dels=0.00;FS=0.349;HRun=1;HaplotypeScore=1.4544;InbreedingCoeff=-0.1053;MQ=58.56;MQ0=0;MQRankSum=0.564;QD=10.58;ReadPosRankSum=0.485 GT:AD:DP:GQ:PL 0/0:27,0:27:72.21:0,72,877 0/0:25,0:25:69.21:0,69,858 0/0:27,0:27:66.19:0,66,828 0/0:84,0:84:99:0,220,2741 0/0:57,1:58:99:0,159,1954 0/0:43,0:43:99:0,117,1480 0/0:46,0:46:99:0,117,1483 0/1:29,13:42:99:330,0,830 0/0:31,0:31:84.26:0,84,1031 0/0:23,0:23:60.18:0,60,737 0/0:31,0:31:90.28:0,90,1095 0/0:32,0:32:81.26:0,81,1032 0/0:26,0:26:72.22:0,72,890 0/0:32,0:32:81.25:0,81,1020 0/0:93,0:93:99:0,223,2783 0/0:32,0:32:96.28:0,96,1151 0/0:25,0:25:66.21:0,66,821 0/1:11,9:20:99:209,0,339 0/1:20,23:43:99:511,0,509 0/1:24,19:43:99:441,0,621 0/0:49,0:50:99:0,105,1309 0/0:32,0:32:75.23:0,75,948 0/1:54,39:93:99:933,0,1502 0/0:38,0:38:99:0,105,1318 0/0:46,0:47:99:0,129,1618 0/1:24,23:47:99:625,0,678 0/0:16,0:16:48.15:0,48,586 0/0:21,0:21:51.16:0,51,642 0/0:22,0:22:57.17:0,57,703 0/0:38,0:38:99:0,99,1205 0/0:22,0:22:54.15:0,54,669 0/0:41,0:42:99:0,108,1358 0/0:24,0:25:66.19:0,66,788 0/0:26,0:26:78.20:0,78,919 0/0:31,0:31:75.23:0,75,942 0/0:34,0:34:90.25:0,90,1093 0/1:33,24:57:99:574,0,787 0/0:14,0:14:39.12:0,39,475 0/1:14,14:28:99:323,0,428 0/0:29,0:29:72.23:0,72,909 0/0:32,0:32:84.26:0,84,1045 0/0:34,0:34:90.26:0,90,1100 19 1978927 . G T 1765.20 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.750;DP=1701;Dels=0.00;FS=4.294;HRun=1;HaplotypeScore=1.6789;InbreedingCoeff=-0.0244;MQ=59.00;MQ0=0;MQRankSum=-0.138;QD=12.61;ReadPosRankSum=0.906 GT:AD:DP:GQ:PL 0/0:29,0:29:75.21:0,75,884 0/0:36,0:36:87.24:0,87,1052 0/0:30,0:30:72.21:0,72,888 0/0:121,0:121:99:0,283,3607 0/0:101,0:101:99:0,256,3207 0/1:40,29:69:99:728,0,1006 0/0:48,0:48:99:0,120,1560 0/1:31,40:71:99:1099,0,768 0/0:27,0:27:69.21:0,69,866 0/0:16,0:16:48.06:0,48,537 0/0:29,0:29:84.21:0,84,963 0/0:36,0:36:99:0,99,1201 0/0:21,0:21:57.12:0,57,649 0/0:35,0:35:99:0,99,1132 0/0:83,0:83:99:0,223,2675 0/0:32,0:32:87.24:0,87,1008 0/0:27,0:27:72.21:0,72,860 0/0:25,0:25:66.20:0,66,804 0/0:33,0:33:84.18:0,84,960 0/0:46,0:46:99:0,114,1434 0/0:33,0:33:90.23:0,90,1073 0/0:24,0:24:60.19:0,60,768 0/0:99,0:99:99:0,250,3182 0/0:52,0:52:99:0,114,1464 0/0:62,0:62:99:0,138,1759 0/0:47,0:47:99:0,105,1311 0/0:17,0:17:42.11:0,42,481 0/0:18,0:18:45.13:0,45,549 0/0:24,0:24:66.19:0,66,801 0/0:33,0:33:90.25:0,90,1082 0/0:32,0:32:72.18:0,72,840 0/0:37,0:38:96.25:0,96,1157 0/0:27,0:27:69.19:0,69,835 0/0:27,0:27:72.17:0,72,830 0/0:22,0:22:66.15:0,66,747 0/0:31,0:31:75.21:0,75,910 0/0:48,0:48:99:0,132,1572 0/0:31,0:31:90.24:0,90,1075 0/0:27,0:27:69.21:0,69,869 0/0:29,0:29:78.22:0,78,912 0/0:29,0:29:78.13:0,78,860 0/0:36,0:36:90.24:0,90,1078 19 1979386 . C T 1213.28 . 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G A 8388.61 . AC=9;AF=0.107;AN=84;BaseQRankSum=4.648;DP=2813;Dels=0.00;FS=1.441;HRun=0;HaplotypeScore=2.1239;InbreedingCoeff=-0.1200;MQ=59.27;MQ0=0;MQRankSum=0.422;QD=13.11;ReadPosRankSum=-0.611 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,126,1464 0/0:46,0:46:99:0,120,1395 0/1:19,28:47:99:750,0,448 0/0:141,0:141:99:0,379,4621 0/0:118,1:119:99:0,288,3925 0/0:102,1:103:99:0,225,3066 0/1:50,39:89:99:1048,0,1434 0/1:47,37:84:99:915,0,1262 0/0:47,0:47:99:0,126,1440 0/0:57,0:57:99:0,150,1727 0/0:42,0:42:99:0,108,1234 0/0:41,0:41:99:0,108,1237 0/0:40,0:40:99:0,99,1192 0/0:33,0:33:90.25:0,90,1054 0/0:136,0:136:99:0,346,4005 0/0:48,0:49:99:0,138,1546 0/0:43,1:44:81.18:0,81,1285 0/0:42,0:42:99:0,114,1309 0/0:93,0:93:99:0,247,2721 0/0:98,0:98:99:0,262,3020 0/0:78,0:80:99:0,205,2343 0/0:55,0:55:99:0,153,1730 0/0:165,0:165:99:0,451,5602 0/1:39,29:68:99:646,0,1113 0/0:102,0:102:99:0,256,3281 0/1:30,41:71:99:1113,0,830 0/0:57,0:57:99:0,141,1679 0/1:25,23:48:99:680,0,620 0/0:35,0:35:96.27:0,96,1114 0/0:62,1:63:99:0,150,1747 0/0:47,0:47:99:0,126,1453 0/1:46,36:82:99:838,0,1245 0/0:73,0:73:99:0,183,2131 0/0:34,0:34:93.25:0,93,1069 0/0:47,0:47:99:0,132,1490 0/0:54,0:54:99:0,138,1621 0/1:32,53:85:99:1460,0,731 0/0:48,1:49:99:0,105,1479 0/1:30,36:66:99:938,0,755 0/0:47,0:47:99:0,123,1380 0/0:34,0:34:99:0,99,1111 0/0:54,0:54:99:0,156,1764 19 2039727 . C T 315.58 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.362;DP=969;Dels=0.00;FS=3.844;HRun=1;HaplotypeScore=0.7292;InbreedingCoeff=-0.0125;MQ=58.91;MQ0=0;MQRankSum=1.527;QD=10.52;ReadPosRankSum=-0.444 GT:AD:DP:GQ:PL 0/0:19,0:19:54.15:0,54,612 0/0:13,0:13:33.08:0,33,384 0/0:17,0:17:42.10:0,42,472 0/0:65,0:67:99:0,174,2095 0/0:65,0:65:99:0,190,2242 0/0:46,0:46:99:0,120,1443 0/0:32,0:32:90.26:0,90,1075 0/1:16,14:30:99:362,0,371 0/0:13,0:13:36.09:0,36,414 0/0:8,1:9:21.05:0,21,239 0/0:13,0:13:39.08:0,39,421 0/0:20,0:20:57.16:0,57,652 0/0:12,0:12:30.08:0,30,341 0/0:13,0:13:39.09:0,39,443 0/0:46,0:46:99:0,126,1407 0/0:18,0:18:51.12:0,51,572 0/0:16,0:16:45.13:0,45,540 0/0:15,0:15:42.11:0,42,484 0/0:29,0:29:75.18:0,75,830 0/0:34,0:34:84.22:0,84,970 0/0:31,1:32:81.17:0,81,900 0/0:20,0:20:54.15:0,54,640 0/0:55,0:55:99:0,144,1755 0/0:26,0:26:69.19:0,69,842 0/0:34,0:34:93.27:0,93,1163 0/0:29,0:29:87.23:0,87,1039 0/0:10,0:10:24.06:0,24,264 0/0:7,0:7:18.05:0,18,212 0/0:13,0:13:36.10:0,36,420 0/0:16,0:16:48.10:0,48,520 0/0:14,0:14:42.09:0,42,455 0/0:33,0:33:90.24:0,90,1034 0/0:19,0:19:57.16:0,57,666 0/0:16,0:16:48.12:0,48,549 0/0:17,0:17:48.13:0,48,557 0/0:16,0:16:42.06:0,42,437 0/0:25,0:25:60.14:0,60,656 0/0:7,0:7:21.06:0,21,246 0/0:11,0:11:30.08:0,30,348 0/0:9,0:9:27.08:0,27,309 0/0:12,0:12:36.09:0,36,408 0/0:21,0:21:63.17:0,63,712 19 2129394 . G A 2514.52 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.935;DP=2262;Dels=0.00;FS=7.257;HRun=1;HaplotypeScore=1.5959;InbreedingCoeff=-0.0244;MQ=59.15;MQ0=0;MQRankSum=0.451;QD=14.13;ReadPosRankSum=0.142 GT:AD:DP:GQ:PL 0/0:34,0:34:93.30:0,93,1192 0/0:37,0:37:99:0,105,1293 0/0:32,0:32:90.28:0,90,1139 0/0:101,0:101:99:0,253,3347 0/0:70,0:70:99:0,196,2648 0/0:72,0:72:99:0,196,2587 0/0:62,0:62:99:0,163,2211 0/0:81,0:81:99:0,202,2756 0/0:40,0:40:99:0,114,1435 0/0:51,0:51:99:0,132,1662 0/0:41,0:41:99:0,117,1467 0/0:36,0:37:99:0,102,1270 0/0:35,0:35:93.27:0,93,1171 0/0:29,0:29:81.25:0,81,1032 0/1:75,75:150:99:2176,0,2106 0/1:14,14:28:99:401,0,444 0/0:37,0:37:99:0,105,1298 0/0:38,0:38:99:0,111,1372 0/0:71,0:71:99:0,202,2535 0/0:102,0:102:99:0,259,3293 0/0:89,0:89:99:0,250,3183 0/0:62,0:62:99:0,163,2079 0/0:66,0:66:99:0,166,2281 0/0:47,0:47:99:0,117,1582 0/0:53,0:53:99:0,144,1915 0/0:53,0:53:99:0,135,1820 0/0:38,0:38:99:0,105,1334 0/0:45,0:45:99:0,129,1582 0/0:36,0:36:99:0,105,1289 0/0:47,0:47:99:0,126,1607 0/0:41,0:41:99:0,114,1459 0/0:75,0:75:99:0,199,2518 0/0:50,0:50:99:0,126,1605 0/0:39,0:39:96.29:0,96,1247 0/0:33,0:33:93.30:0,93,1182 0/0:39,0:39:99:0,105,1346 0/0:92,0:92:99:0,238,2996 0/0:51,0:51:99:0,138,1739 0/0:46,0:46:99:0,135,1684 0/0:42,0:42:99:0,120,1518 0/0:33,0:33:96.28:0,96,1172 0/0:37,0:37:99:0,105,1318 19 2210434 . C G 51.27 . AC=1;AF=0.012;AN=82;BaseQRankSum=0.747;DP=271;Dels=0.00;FS=2.590;HRun=1;HaplotypeScore=0.1569;InbreedingCoeff=-0.0251;MQ=58.35;MQ0=0;MQRankSum=1.691;QD=12.82;ReadPosRankSum=0.091 GT:AD:DP:GQ:PL 0/0:8,0:8:21.07:0,21,273 0/0:4,0:4:12.04:0,12,146 0/0:3,0:3:9.03:0,9,105 0/0:9,0:9:24.08:0,24,307 0/0:12,0:12:36.11:0,36,459 0/0:8,0:8:21.07:0,21,275 0/0:4,0:4:9.03:0,9,115 0/0:6,0:6:18.06:0,18,240 0/0:3,0:3:9.03:0,9,104 0/0:6,0:6:18.05:0,18,209 0/0:4,0:4:12.04:0,12,145 0/0:6,0:6:18.05:0,18,213 0/0:4,0:4:9.03:0,9,109 0/0:7,0:7:21.06:0,21,239 0/0:18,0:18:48.12:0,48,563 0/0:13,0:13:36.09:0,36,433 0/0:3,0:3:9.02:0,9,97 0/0:4,0:4:12.03:0,12,141 0/0:9,0:9:18.06:0,18,221 0/0:11,0:11:30.06:0,30,357 0/0:12,0:12:36.11:0,36,440 0/0:9,0:9:24.07:0,24,297 0/0:10,0:10:27.09:0,27,363 0/0:4,0:4:9.03:0,9,111 0/1:1,3:4:18.56:97,0,19 0/0:7,0:7:15.05:0,15,210 0/0:5,0:5:12.03:0,12,144 0/0:5,0:5:15.04:0,15,171 0/0:5,0:5:15.03:0,15,157 0/0:8,0:8:18.06:0,18,228 0/0:6,0:6:12.03:0,12,151 0/0:6,0:6:18.03:0,18,199 0/0:11,0:11:33.08:0,33,375 0/0:5,0:5:15.04:0,15,176 ./. 0/0:3,0:3:9.02:0,9,104 0/0:6,0:6:18.04:0,18,199 0/0:8,0:8:21.04:0,21,248 0/0:7,0:7:18.05:0,18,206 0/0:3,0:3:9.03:0,9,112 0/0:2,0:2:6.02:0,6,66 0/0:3,0:3:9.03:0,9,115 19 2210497 . C T 428.69 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.204;DP=638;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7739;InbreedingCoeff=-0.0255;MQ=58.30;MQ0=0;MQRankSum=0.393;QD=13.40;ReadPosRankSum=-1.047 GT:AD:DP:GQ:PL 0/0:15,0:15:33.10:0,33,427 0/0:9,0:9:27.08:0,27,315 0/0:9,0:9:24.06:0,24,277 0/0:24,0:24:66.21:0,66,845 0/0:32,0:32:87.20:0,87,1073 0/1:10,13:23:99:351,0,258 0/1:3,6:9:95.90:140,0,96 0/0:13,0:13:36.12:0,36,465 0/0:14,0:14:36.10:0,36,433 0/0:13,0:13:36.10:0,36,426 0/0:11,0:11:30.09:0,30,361 0/0:12,0:13:36.11:0,36,443 0/0:7,0:7:21.06:0,21,251 0/0:13,0:13:39.12:0,39,469 0/0:26,0:26:63.20:0,63,804 0/0:18,0:18:51.15:0,51,608 0/0:6,0:7:15.05:0,15,183 0/0:10,0:10:24.07:0,24,283 0/0:25,0:28:63.19:0,63,760 0/0:27,0:27:72.19:0,72,848 0/0:23,0:24:60.15:0,60,707 0/0:21,0:22:57.18:0,57,713 0/0:37,0:37:99:0,102,1308 0/0:11,0:11:30.07:0,30,372 0/0:13,0:13:39.12:0,39,505 0/0:15,0:15:42.12:0,42,521 0/0:9,0:9:24.07:0,24,302 0/0:11,0:11:33.09:0,33,385 0/0:7,0:7:18.02:0,18,190 0/0:16,0:16:36.10:0,36,433 0/0:10,0:10:30.09:0,30,365 0/0:11,0:11:27.08:0,27,342 0/0:20,0:20:54.16:0,54,661 0/0:8,0:8:24.07:0,24,296 0/0:16,0:16:45.10:0,45,521 0/0:9,0:9:27.07:0,27,320 0/0:18,0:18:54.15:0,54,658 0/0:12,0:12:30.08:0,30,350 0/0:9,0:9:24.08:0,24,310 0/0:12,0:12:30.09:0,30,365 0/0:12,0:12:36.09:0,36,420 0/0:13,1:15:33.10:0,33,415 19 2213958 . C T 579.44 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.886;DP=1284;Dels=0.00;FS=4.020;HRun=0;HaplotypeScore=1.3362;InbreedingCoeff=-0.0121;MQ=59.13;MQ0=0;MQRankSum=2.469;QD=16.56;ReadPosRankSum=0.739 GT:AD:DP:GQ:PL 0/0:24,0:24:69.18:0,69,748 0/0:12,0:12:36.09:0,36,387 0/0:26,0:26:75.19:0,75,827 0/0:51,0:51:99:0,150,1751 0/0:50,0:50:99:0,138,1638 0/0:47,0:47:99:0,135,1609 0/0:34,0:34:93.26:0,93,1091 0/1:15,20:35:99:626,0,402 0/0:21,0:21:60.14:0,60,641 0/0:20,0:20:60.15:0,60,647 0/0:15,0:15:42.10:0,42,448 0/0:14,0:14:39.10:0,39,423 0/0:16,0:16:48.11:0,48,508 0/0:34,0:34:90.22:0,90,968 0/0:63,0:63:99:0,183,1944 0/0:25,0:25:66.17:0,66,722 0/0:33,0:33:93.20:0,93,989 0/0:18,0:18:51.12:0,51,550 0/0:37,0:37:99:0,111,1172 0/0:53,0:53:99:0,156,1672 0/0:37,0:37:99:0,108,1168 0/0:31,0:31:90.20:0,90,950 0/0:67,0:67:99:0,190,2220 0/0:32,0:32:93.27:0,93,1110 0/0:40,0:40:99:0,114,1353 0/0:28,0:28:84.20:0,84,953 0/0:18,0:18:51.12:0,51,551 0/0:18,0:18:54.14:0,54,584 0/0:19,0:19:54.14:0,54,592 0/0:23,0:23:66.16:0,66,710 0/0:20,0:20:54.15:0,54,608 0/0:58,0:58:99:0,162,1753 0/0:29,0:29:75.18:0,75,814 0/0:20,0:20:54.13:0,54,599 0/0:18,0:18:54.14:0,54,590 0/0:26,0:26:75.20:0,75,830 0/0:52,0:52:99:0,141,1526 0/0:29,0:29:84.20:0,84,898 0/0:36,0:36:99:0,108,1182 0/0:19,0:19:57.14:0,57,609 0/0:21,0:21:57.13:0,57,607 0/0:15,0:15:42.10:0,42,450 19 2213961 . G A 326.63 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.066;DP=1187;Dels=0.00;FS=9.578;HRun=0;HaplotypeScore=1.2936;InbreedingCoeff=-0.0121;MQ=59.10;MQ0=0;MQRankSum=0.942;QD=12.10;ReadPosRankSum=-0.237 GT:AD:DP:GQ:PL 0/0:24,0:24:66.19:0,66,794 0/0:12,0:12:36.09:0,36,439 0/0:26,0:26:75.23:0,75,932 0/0:44,0:44:99:0,129,1686 0/0:45,0:45:99:0,126,1666 0/0:46,0:46:99:0,129,1675 0/0:33,0:33:90.28:0,90,1143 0/0:31,0:31:84.25:0,84,1091 0/0:18,0:18:48.15:0,48,609 0/0:18,0:18:54.17:0,54,666 0/0:16,0:16:45.12:0,45,527 0/0:16,0:16:48.15:0,48,593 0/0:16,0:16:48.14:0,48,590 0/0:33,0:33:96.27:0,96,1151 0/0:53,0:53:99:0,150,1806 0/0:24,0:24:66.18:0,66,791 0/0:28,0:28:81.25:0,81,1002 0/0:16,0:16:42.12:0,42,506 0/0:33,0:33:93.28:0,93,1121 0/0:46,0:46:99:0,126,1577 0/0:33,0:33:93.29:0,93,1160 0/0:28,0:29:81.17:0,81,937 0/0:65,0:65:99:0,193,2475 0/0:31,0:31:84.24:0,84,1077 0/0:38,0:38:99:0,108,1419 0/0:24,0:25:69.22:0,69,890 0/0:17,0:17:48.15:0,48,590 0/0:17,0:17:51.14:0,51,614 0/0:17,0:17:45.14:0,45,550 0/0:21,0:21:57.17:0,57,691 0/0:19,0:19:54.17:0,54,663 0/0:52,0:53:99:0,144,1717 0/1:12,15:27:99:373,0,349 0/0:18,0:18:48.14:0,48,591 0/0:15,0:15:45.14:0,45,544 0/0:25,0:25:72.22:0,72,889 0/0:53,0:53:99:0,141,1702 0/0:26,0:27:78.21:0,78,932 0/0:34,0:34:96.28:0,96,1150 0/0:15,0:15:45.14:0,45,559 0/0:19,0:19:54.17:0,54,666 0/0:11,0:11:33.10:0,33,413 19 2223327 . G A 1548.28 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.104;DP=3824;DS;Dels=0.00;FS=7.238;HRun=0;HaplotypeScore=2.1208;InbreedingCoeff=-0.0244;MQ=59.24;MQ0=1;MQRankSum=-0.751;QD=12.39;ReadPosRankSum=0.184 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,147,1720 0/0:64,0:64:99:0,159,1901 0/0:62,1:63:99:0,162,1938 0/0:181,0:181:99:0,451,5669 0/0:165,0:166:99:0,397,5062 0/0:131,0:131:99:0,343,4252 0/0:120,0:120:99:0,301,3758 0/0:128,0:128:99:0,322,4011 0/1:34,35:69:99:974,0,904 0/1:32,24:56:99:637,0,814 0/0:62,0:63:99:0,162,1948 0/0:49,0:49:99:0,126,1511 0/0:52,0:52:99:0,141,1635 0/0:72,0:72:99:0,187,2227 0/0:242,0:243:99:0,605,7246 0/0:53,2:55:99:0,112,1710 0/0:57,0:57:99:0,147,1718 0/0:54,0:54:99:0,132,1589 0/0:127,1:129:99:0,322,3736 0/0:122,0:122:99:0,313,3716 0/0:119,0:120:99:0,283,3374 0/0:104,0:104:99:0,277,3267 0/0:222,0:222:99:0,536,6838 0/0:102,0:102:99:0,238,2979 0/0:138,0:138:99:0,352,4466 0/0:118,0:118:99:0,295,3734 0/0:43,0:43:99:0,108,1313 0/0:59,0:59:99:0,156,1838 0/0:54,0:54:99:0,141,1672 0/0:64,0:64:99:0,168,2025 0/0:71,0:71:99:0,192,2226 0/0:134,0:134:99:0,322,3909 0/0:83,0:83:99:0,211,2511 0/0:62,0:62:99:0,159,1855 0/0:64,0:64:99:0,171,2007 0/0:74,0:75:99:0,196,2312 0/0:126,0:126:99:0,316,3701 0/0:52,0:52:99:0,141,1633 0/0:56,0:56:99:0,150,1708 0/0:56,0:56:99:0,150,1747 0/0:45,0:45:99:0,117,1394 0/0:49,0:49:99:0,135,1554 19 2223487 . C T 661.69 . AC=1;AF=0.012;AN=84;BaseQRankSum=5.811;DP=626;Dels=0.00;FS=2.052;HRun=0;HaplotypeScore=0.8423;InbreedingCoeff=-0.0137;MQ=59.07;MQ0=1;MQRankSum=-0.188;QD=21.34;ReadPosRankSum=1.864 GT:AD:DP:GQ:PL 0/0:6,0:6:18.05:0,18,194 0/0:10,0:10:30.07:0,30,317 0/0:7,0:7:18.04:0,18,190 0/0:42,0:42:99:0,111,1302 0/0:21,0:21:57.16:0,57,680 0/0:19,0:19:51.13:0,51,593 0/0:17,0:17:45.12:0,45,520 0/0:20,1:21:20.82:0,21,601 0/0:13,0:13:36.09:0,36,393 0/0:7,0:7:21.06:0,21,230 0/0:10,0:10:30.08:0,30,324 0/0:9,0:9:27.06:0,27,288 0/0:6,0:6:18.05:0,18,197 0/0:7,0:7:21.05:0,21,224 0/0:39,0:39:99:0,99,1102 0/0:15,0:15:42.11:0,42,470 0/0:9,0:9:27.04:0,27,278 0/0:12,0:12:33.08:0,33,359 0/0:25,0:25:60.13:0,60,650 0/0:20,0:20:57.11:0,57,586 0/0:22,0:22:66.15:0,66,698 0/0:15,0:15:42.11:0,42,463 0/1:9,22:31:99:708,0,215 0/0:8,0:8:24.07:0,24,288 0/0:14,0:15:39.09:0,39,463 0/0:14,0:14:39.10:0,39,448 0/0:11,0:11:30.08:0,30,348 0/0:11,0:11:30.04:0,30,303 0/0:11,0:11:33.07:0,33,353 0/0:11,0:11:33.07:0,33,342 0/0:12,0:13:36.08:0,36,376 0/0:31,0:31:78.19:0,78,851 0/0:20,0:20:57.14:0,57,625 0/0:13,0:13:36.09:0,36,398 0/0:7,0:7:21.05:0,21,225 0/0:12,0:12:36.09:0,36,390 0/0:19,0:19:54.14:0,54,579 0/0:8,0:8:24.06:0,24,263 0/0:17,0:17:48.11:0,48,498 0/0:8,0:8:24.02:0,24,236 0/0:6,0:6:15.03:0,15,154 0/0:8,0:8:24.04:0,24,253 19 2271899 . G C 376.67 . AC=19;AF=0.226;AN=84;BaseQRankSum=-8.652;DP=766;Dels=0.00;FS=121.500;HRun=1;HaplotypeScore=0.4032;InbreedingCoeff=-0.2430;MQ=57.58;MQ0=0;MQRankSum=0.064;QD=1.07;ReadPosRankSum=0.518 GT:AD:DP:GQ:PL 0/1:9,7:16:29.32:29,0,170 0/1:9,6:15:5.59:6,0,207 0/1:11,7:18:6.52:7,0,241 0/0:12,6:18:2.38:0,2,230 0/0:14,5:19:3.48:0,3,341 0/0:4,3:7:3.01:0,3,41 0/0:10,4:14:15.05:0,15,187 0/1:11,2:13:7.49:7,0,220 0/0:14,8:22:30.09:0,30,363 0/0:11,5:17:13.33:0,13,309 0/0:12,5:17:4.36:0,4,259 0/1:9,4:13:12.56:13,0,150 0/1:9,4:13:9.56:10,0,170 0/0:18,8:26:3.39:0,3,272 0/1:37,24:61:99:141,0,773 0/1:9,8:17:42.12:42,0,126 0/1:10,4:14:8.58:9,0,189 0/1:8,6:14:16.51:17,0,127 0/0:14,3:18:18.03:0,18,200 0/0:20,4:25:39.04:0,39,416 0/1:14,3:17:21.29:21,0,250 0/0:15,5:20:2.33:1,0,269 0/0:12,7:19:21.05:0,21,247 1/1:3,3:6:6.02:66,6,0 0/1:6,6:13:9.65:10,0,140 0/0:8,1:9:15.05:0,15,187 0/1:14,4:18:6.54:7,0,217 0/0:10,8:18:18.06:0,18,223 0/0:7,4:11:1.28:5,0,158 0/0:6,4:10:12.02:0,12,131 0/0:13,3:16:27.05:0,27,288 0/0:29,5:34:57.10:0,57,646 0/1:20,8:28:20.61:21,0,439 0/0:10,3:13:21.06:0,21,259 0/1:15,9:24:58.80:59,0,198 0/1:12,11:24:28.15:28,0,256 0/1:17,12:29:33.82:34,0,399 0/0:12,2:14:2.34:1,0,300 0/0:12,4:16:12.04:0,12,146 0/0:12,6:18:27.07:0,27,310 0/0:13,4:17:21.02:0,21,222 0/0:10,5:15:18.04:0,18,214 19 2339949 . T C 4097.38 . AC=53;AF=0.646;AN=82;BaseQRankSum=3.090;DP=186;Dels=0.00;FS=1.674;HRun=0;HaplotypeScore=0.3128;InbreedingCoeff=0.0104;MQ=57.54;MQ0=0;MQRankSum=1.664;QD=25.29;ReadPosRankSum=2.064 GT:AD:DP:GQ:PL 0/1:3,3:6:88.27:88,0,94 0/1:1,1:2:23.61:24,0,30 1/1:0,2:2:6.02:79,6,0 1/1:0,4:4:12.04:157,12,0 1/1:0,3:3:9.03:116,9,0 1/1:1,1:2:3.01:41,3,0 0/0:4,0:4:12.04:0,12,151 0/0:2,0:2:6.02:0,6,79 0/0:7,0:7:21.04:0,21,242 0/1:1,2:3:27.95:69,0,28 0/1:3,1:4:24.94:25,0,91 0/1:0,1:1:1.76:38,3,0 ./. 1/1:0,5:5:15.05:192,15,0 0/1:5,11:16:99:287,0,111 1/1:0,7:7:21.07:266,21,0 0/1:2,4:6:60.51:99,0,61 0/1:5,1:6:18.39:18,0,145 0/1:2,3:5:56.29:95,0,56 0/0:5,0:5:15.04:0,15,178 0/1:2,9:11:40.83:295,0,41 0/1:2,10:12:42.17:277,0,42 0/1:3,3:6:79.41:109,0,79 0/1:3,1:4:29.19:29,0,105 0/0:4,0:4:12.04:0,12,149 0/0:2,0:2:6.02:0,6,78 0/1:2,1:3:27.95:28,0,60 1/1:0,1:1:3.01:39,3,0 1/1:0,1:1:3.01:39,3,0 1/1:0,5:5:15.05:190,15,0 0/1:0,1:1:1.76:38,3,0 1/1:0,5:5:15.05:186,15,0 1/1:0,4:4:9.03:111,9,0 0/1:3,5:8:54.49:163,0,54 1/1:0,6:6:18.06:221,18,0 1/1:0,3:3:9.03:113,9,0 1/1:0,9:9:24.07:292,24,0 1/1:0,1:1:3.01:39,3,0 1/1:0,4:4:12.04:154,12,0 1/1:0,3:3:9.03:110,9,0 0/1:1,1:2:30.96:31,0,32 1/1:0,1:1:3.01:38,3,0 19 2339958 . T C 5256.25 . AC=78;AF=0.951;AN=82;BaseQRankSum=1.078;DP=160;Dels=0.00;FS=10.694;HRun=1;HaplotypeScore=0.3108;InbreedingCoeff=0.2436;MQ=57.40;MQ0=0;MQRankSum=0.505;QD=33.48;ReadPosRankSum=0.341 GT:AD:DP:GQ:PL 1/1:0,5:5:15.02:175,15,0 1/1:0,1:1:3.01:37,3,0 1/1:0,2:2:6.02:79,6,0 1/1:0,3:3:9.03:121,9,0 1/1:0,3:3:9.03:110,9,0 1/1:0,1:1:3.01:40,3,0 1/1:0,2:2:6.02:83,6,0 1/1:0,1:1:3.01:40,3,0 1/1:0,6:6:18.05:219,18,0 1/1:0,4:4:12.04:146,12,0 1/1:0,3:3:9.03:107,9,0 1/1:0,1:1:3.01:38,3,0 1/1:0,1:1:3.01:36,3,0 1/1:0,4:4:12.04:153,12,0 1/1:0,13:13:33.09:399,33,0 1/1:0,6:6:18.06:230,18,0 1/1:0,4:4:9.03:115,9,0 1/1:0,5:5:12.04:156,12,0 0/1:1,2:3:27.10:58,0,27 0/0:3,0:3:9.03:0,9,109 1/1:0,12:12:30.08:359,30,0 1/1:0,10:10:27.07:332,27,0 1/1:0,5:5:15.05:196,15,0 1/1:0,3:3:9.03:118,9,0 0/1:2,1:3:0.97:0,6,66 1/1:0,2:2:6.02:75,6,0 1/1:0,3:3:9.03:114,9,0 ./. 1/1:0,1:1:3.01:39,3,0 1/1:0,4:4:12.04:142,12,0 1/1:0,1:1:3.01:40,3,0 1/1:0,5:5:12.04:151,12,0 1/1:0,5:5:15.03:169,15,0 1/1:0,6:6:15.04:183,15,0 1/1:0,7:7:18.06:231,18,0 1/1:0,5:5:15.04:179,15,0 1/1:0,8:8:24.06:278,24,0 1/1:0,1:1:3.01:39,3,0 1/1:0,2:2:6.01:64,6,0 1/1:0,4:4:12.02:136,12,0 1/1:0,1:1:3.01:31,3,0 1/1:0,1:1:3.01:39,3,0 19 2344022 . G A 7.89 . AC=2;AF=0.030;AN=66;BaseQRankSum=-0.113;DP=121;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0807;InbreedingCoeff=0.2668;MQ=58.14;MQ0=0;MQRankSum=1.486;QD=3.95;ReadPosRankSum=-0.154 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,177 0/0:4,0:4:12.03:0,12,141 0/0:2,0:2:6.01:0,6,65 ./. 0/0:1,0:1:3.01:0,3,42 ./. ./. ./. 0/0:8,0:8:21.03:0,21,236 0/0:6,0:6:15.04:0,15,182 0/0:2,0:2:5.99:0,6,60 0/0:1,0:1:3.01:0,3,39 0/0:7,0:7:18.04:0,18,200 0/0:4,0:4:9.03:0,9,120 0/0:8,0:8:21.07:0,21,260 0/0:4,0:4:9.03:0,9,111 ./. 0/0:3,0:3:6.02:0,6,71 0/0:3,0:3:9.02:0,9,99 0/0:2,0:2:6:0,6,60 0/0:9,0:9:27.08:0,27,332 0/0:4,0:4:9.02:0,9,110 ./. ./. 0/1:0,1:1:1.76:35,3,0 ./. ./. 0/0:3,0:3:9.03:0,9,112 0/1:0,1:1:1.76:36,3,0 0/0:1,0:1:3.01:0,3,31 0/0:1,0:1:2.99:0,3,24 0/0:9,0:9:21.07:0,21,278 0/0:5,0:5:9.02:0,9,95 0/0:2,0:2:6.02:0,6,74 0/0:4,0:4:9.03:0,9,120 0/0:3,0:3:6.02:0,6,84 0/0:5,0:5:12.04:0,12,152 0/0:2,0:2:6.01:0,6,61 0/0:3,0:3:9.01:0,9,92 0/0:2,0:2:6:0,6,55 0/0:3,0:3:9.03:0,9,113 0/0:3,0:3:9.03:0,9,108 19 2344034 . C A 397.75 . AC=5;AF=0.076;AN=66;BaseQRankSum=-3.094;DP=115;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0838;InbreedingCoeff=0.0255;MQ=58.54;MQ0=0;MQRankSum=1.482;QD=15.91;ReadPosRankSum=-0.814 GT:AD:DP:GQ:PL 0/0:4,0:4:12.04:0,12,144 0/0:3,0:3:9.03:0,9,113 0/0:2,0:2:6.02:0,6,71 ./. 0/0:1,0:1:3.01:0,3,42 ./. ./. ./. 0/0:7,0:7:21.07:0,21,266 0/0:5,0:5:12.04:0,12,155 0/0:3,0:3:3.01:0,3,31 ./. 0/1:3,5:8:93.63:108,0,94 0/0:3,0:3:9.03:0,9,116 0/1:2,7:9:21.95:157,0,22 1/1:0,4:4:12.04:147,12,0 0/0:1,0:1:3.01:0,3,35 0/0:3,0:3:6.02:0,6,84 0/0:2,0:2:6.02:0,6,71 0/0:2,0:2:3.01:0,3,36 0/0:9,0:9:24.07:0,24,306 0/0:5,0:5:12.04:0,12,155 ./. ./. 0/0:1,0:1:3.01:0,3,39 ./. ./. 0/0:2,0:2:6.02:0,6,75 0/0:1,0:1:3.01:0,3,38 0/0:2,0:2:6.01:0,6,60 0/0:2,0:2:3.01:0,3,45 0/0:7,0:7:12.04:0,12,166 0/0:4,0:4:9.03:0,9,114 0/0:2,0:2:6.02:0,6,76 0/1:1,3:4:30.29:73,0,30 0/0:2,0:2:3.01:0,3,45 0/0:5,0:5:9.03:0,9,123 0/0:2,0:2:6.02:0,6,66 0/0:3,0:3:6.02:0,6,76 0/0:3,0:3:6.02:0,6,81 0/0:2,0:2:6.02:0,6,77 0/0:2,0:2:6.02:0,6,76 19 2351591 . C T 496.32 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.264;DP=2564;Dels=0.00;FS=4.359;HRun=0;HaplotypeScore=1.5555;InbreedingCoeff=-0.0120;MQ=58.80;MQ0=0;MQRankSum=0.564;QD=9.36;ReadPosRankSum=0.573 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,138,1582 0/0:42,0:42:99:0,111,1272 0/0:40,0:40:99:0,108,1264 0/0:133,0:133:99:0,352,4358 0/0:146,0:146:99:0,373,4603 0/0:111,0:111:99:0,280,3449 0/0:72,0:72:99:0,184,2281 0/0:80,0:80:99:0,205,2480 0/0:32,0:32:90.19:0,90,1012 0/0:36,0:36:93.24:0,93,1084 0/0:31,0:31:84.25:0,84,1010 0/0:34,0:34:93.24:0,93,1052 0/0:27,0:27:81.19:0,81,886 0/0:43,0:43:99:0,120,1331 0/0:139,0:139:99:0,346,4102 0/0:63,0:63:99:0,177,1961 0/0:40,0:40:99:0,111,1251 0/0:34,0:34:93.25:0,93,1072 0/0:90,0:90:99:0,220,2564 0/0:96,0:96:99:0,259,2938 0/0:73,1:74:99:0,164,2228 0/1:33,20:53:99:543,0,859 0/0:125,0:125:99:0,328,4075 0/0:71,0:71:99:0,165,2099 0/0:97,0:97:99:0,235,3016 0/0:54,0:54:99:0,144,1762 0/0:35,0:35:90.21:0,90,999 0/0:29,0:30:78.22:0,78,921 0/0:44,0:44:99:0,126,1393 0/0:31,0:31:93.25:0,93,1057 0/0:44,0:44:99:0,129,1451 0/0:81,1:82:99:0,217,2557 0/0:62,0:62:99:0,168,1923 0/0:45,0:45:99:0,120,1412 0/0:40,0:40:99:0,108,1240 0/0:57,0:57:99:0,156,1768 0/0:81,2:83:99:0,150,2397 0/0:56,0:56:99:0,150,1738 0/0:43,0:43:99:0,114,1272 0/0:28,0:28:81.18:0,81,865 0/0:28,0:28:78.20:0,78,899 0/0:40,0:40:99:0,111,1276 19 2353074 . A G 489.16 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.946;DP=781;Dels=0.00;FS=5.862;HRun=1;HaplotypeScore=0.9425;InbreedingCoeff=-0.0258;MQ=57.87;MQ0=0;MQRankSum=2.295;QD=8.43;ReadPosRankSum=-0.855 GT:AD:DP:GQ:PL 0/0:9,0:9:21.06:0,21,252 0/0:18,0:18:54.16:0,54,645 0/0:9,0:9:27.09:0,27,338 0/1:18,7:25:99:197,0,470 0/0:38,0:38:99:0,105,1330 0/0:28,0:28:72.23:0,72,925 0/0:17,0:17:45.14:0,45,579 0/0:26,0:26:66.19:0,66,842 0/0:10,0:10:30.09:0,30,363 0/0:12,0:13:30.07:0,30,361 0/0:12,0:12:30.10:0,30,388 0/0:13,0:13:39.12:0,39,472 0/0:7,0:7:15.05:0,15,205 0/0:13,0:13:36.11:0,36,445 0/0:45,0:45:99:0,123,1526 0/0:16,0:16:48.13:0,48,560 0/0:14,0:14:36.10:0,36,445 0/0:9,0:9:27.07:0,27,319 0/0:30,0:30:78.22:0,78,962 0/0:32,0:32:84.23:0,84,1010 0/0:33,0:34:84.24:0,84,1019 0/0:17,0:17:48.14:0,48,581 0/1:20,13:33:99:354,0,577 0/0:24,0:24:63.20:0,63,813 0/0:22,0:22:57.15:0,57,674 0/0:14,0:14:39.12:0,39,502 0/0:11,0:11:30.09:0,30,363 0/0:12,0:12:33.07:0,33,373 0/0:10,0:10:27.08:0,27,333 0/0:26,0:26:75.18:0,75,890 0/0:10,0:10:27.08:0,27,323 0/0:38,0:38:99:0,102,1249 0/0:17,0:17:36.11:0,36,456 0/0:18,0:18:45.14:0,45,548 0/0:4,0:4:12.04:0,12,147 0/0:9,0:9:27.08:0,27,332 0/0:23,0:23:57.15:0,57,716 0/0:15,0:15:45.14:0,45,539 0/0:16,0:16:45.14:0,45,554 0/0:12,0:12:33.10:0,33,405 0/0:14,0:14:39.12:0,39,483 0/0:18,0:18:45.11:0,45,540 19 2353148 . T C 1508.06 . AC=10;AF=0.119;AN=84;BaseQRankSum=4.376;DP=519;Dels=0.00;FS=0.528;HRun=2;HaplotypeScore=1.9026;InbreedingCoeff=-0.1378;MQ=58.02;MQ0=0;MQRankSum=-0.671;QD=11.60;ReadPosRankSum=-1.197 GT:AD:DP:GQ:PL 0/0:6,0:6:18.05:0,18,208 0/0:18,0:18:51.15:0,51,594 0/0:7,0:7:21.06:0,21,247 0/0:23,0:23:60.14:0,60,697 0/0:23,0:23:66.19:0,66,778 0/0:13,0:13:33.07:0,33,392 0/0:8,0:8:21.06:0,21,250 0/1:15,14:29:99:401,0,337 0/0:9,0:9:24.06:0,24,274 0/0:13,0:13:39.11:0,39,451 0/0:6,0:6:18.05:0,18,213 0/1:2,3:5:27.10:67,0,27 0/1:3,4:7:91.30:130,0,91 0/0:8,0:8:21.06:0,21,237 0/1:16,12:28:99:300,0,413 0/1:11,6:17:99:178,0,304 0/0:9,0:9:18.05:0,18,216 0/0:10,0:10:30.08:0,30,348 0/0:19,0:19:54.16:0,54,648 0/0:18,0:18:51.12:0,51,570 0/0:11,0:11:30.09:0,30,356 0/0:17,0:17:30.09:0,30,375 0/0:37,0:37:99:0,102,1206 0/1:4,6:10:87.24:131,0,87 0/0:16,0:16:39.12:0,39,491 0/1:6,7:13:99:225,0,150 0/0:6,0:6:15.04:0,15,186 0/0:7,0:7:21.05:0,21,236 0/1:5,5:10:99:136,0,110 0/1:5,2:7:20.52:21,0,163 0/1:1,2:4:25.34:54,0,25 0/0:22,0:23:60.14:0,60,679 0/0:14,0:14:42.13:0,42,494 0/0:9,0:9:24.07:0,24,293 0/0:6,0:6:18.05:0,18,211 0/0:5,0:5:15.05:0,15,181 0/0:11,0:11:33.07:0,33,362 0/0:7,0:7:21.06:0,21,235 0/0:5,0:5:12.03:0,12,137 0/0:8,1:9:21.06:0,21,240 0/0:9,0:9:27.08:0,27,326 0/0:7,0:7:21.06:0,21,245 19 2353150 . C A 4025.19 . AC=23;AF=0.274;AN=84;BaseQRankSum=5.051;DP=516;Dels=0.00;FS=0.372;HRun=0;HaplotypeScore=1.8325;InbreedingCoeff=-0.2642;MQ=57.96;MQ0=0;MQRankSum=1.706;QD=13.83;ReadPosRankSum=0.756 GT:AD:DP:GQ:PL 0/1:4,1:5:19.31:19,0,126 0/1:7,12:19:99:350,0,190 0/0:7,0:7:21.06:0,21,232 0/0:23,0:23:60.18:0,60,741 0/0:21,0:21:60.17:0,60,742 0/1:6,5:11:99:142,0,142 0/1:2,6:8:55.23:159,0,55 0/1:15,15:30:99:386,0,390 1/1:0,10:10:24.07:292,24,0 0/1:9,3:12:71.31:71,0,273 0/1:5,1:6:18.93:19,0,152 0/0:5,0:5:12.03:0,12,131 0/0:7,0:7:21.06:0,21,237 0/0:8,0:8:18.01:0,18,171 0/1:11,15:26:99:471,0,211 0/0:17,0:17:45.12:0,45,516 0/1:6,4:10:99:117,0,138 0/1:5,5:10:99:145,0,152 0/0:20,0:20:54.15:0,54,611 0/0:17,0:17:48.12:0,48,542 0/1:9,3:12:76.42:76,0,249 0/1:9,7:16:99:183,0,182 0/1:18,18:37:99:519,0,516 0/1:5,4:9:55.92:56,0,153 0/1:7,9:16:99:262,0,176 0/1:6,6:12:99:159,0,175 0/1:3,3:6:62.13:94,0,62 0/0:7,0:7:21.05:0,21,218 0/1:4,5:9:93.88:137,0,94 0/0:8,0:8:21.05:0,21,232 0/0:4,0:4:12.01:0,12,116 0/0:22,0:22:57.15:0,57,655 0/0:13,0:13:36.10:0,36,422 0/1:6,5:11:99:115,0,156 0/1:3,3:6:76.17:94,0,76 0/0:5,0:5:12.03:0,12,139 0/0:11,0:11:33.07:0,33,369 0/0:8,0:8:21.05:0,21,231 0/0:5,0:5:15.04:0,15,174 0/0:9,0:9:21.06:0,21,238 0/1:5,5:10:99:158,0,149 0/0:8,0:8:21.05:0,21,232 19 2353179 . C T 315.40 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.675;DP=556;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.6538;InbreedingCoeff=-0.0313;MQ=57.91;MQ0=0;MQRankSum=0.457;QD=12.62;ReadPosRankSum=0.612 GT:AD:DP:GQ:PL 0/0:5,0:6:15.04:0,15,180 0/0:12,0:12:36.07:0,36,407 0/0:6,0:6:15.03:0,15,160 0/0:26,0:26:63.20:0,63,808 0/0:27,0:27:72.23:0,72,921 0/0:11,0:11:33.04:0,33,367 0/0:8,0:8:24.08:0,24,304 0/0:33,0:33:78.22:0,78,987 0/1:5,8:13:99:228,0,137 0/1:7,5:12:99:150,0,172 0/0:8,0:8:21.06:0,21,255 0/0:4,0:4:12.03:0,12,138 0/0:4,0:4:9.01:0,9,95 0/0:13,0:13:36.09:0,36,392 0/0:24,0:24:69.18:0,69,773 0/0:15,0:15:42.12:0,42,487 0/0:5,0:5:15.04:0,15,180 0/0:5,0:5:15.03:0,15,171 0/0:22,0:22:54.12:0,54,589 0/0:20,0:20:54.16:0,54,645 0/0:18,1:19:13.77:0,14,469 0/0:9,0:9:24.06:0,24,265 0/0:45,0:45:99:0,120,1467 0/0:15,0:15:39.11:0,39,478 0/0:17,0:17:48.15:0,48,609 0/0:13,0:13:33.10:0,33,409 0/0:5,0:5:15.04:0,15,164 0/0:4,0:4:12.03:0,12,128 0/0:8,0:8:21.05:0,21,229 0/0:19,0:19:54.15:0,54,624 0/0:7,0:7:18.02:0,18,178 0/0:24,0:24:69.19:0,69,799 0/0:12,0:12:33.10:0,33,399 0/0:10,0:10:21.06:0,21,247 0/0:4,0:4:12.03:0,12,133 0/0:10,0:10:27.07:0,27,309 0/0:10,0:10:30.05:0,30,332 0/0:12,0:12:36.09:0,36,411 0/0:9,0:9:24.05:0,24,260 0/0:11,0:11:33.09:0,33,383 0/0:9,0:9:21.05:0,21,237 0/0:10,0:10:30.09:0,30,353 19 2415801 . G A 303.82 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.004;DP=2107;Dels=0.00;FS=1.063;HRun=0;HaplotypeScore=2.1110;InbreedingCoeff=-0.0244;MQ=58.96;MQ0=0;MQRankSum=-0.285;QD=6.08;ReadPosRankSum=0.516 GT:AD:DP:GQ:PL 0/0:29,0:29:78.23:0,78,936 0/0:26,0:26:60.16:0,60,714 0/0:28,0:28:69.20:0,69,851 0/0:178,0:178:99:0,433,5566 0/0:138,0:138:99:0,343,4453 0/0:98,0:98:99:0,250,3189 0/0:103,0:103:99:0,235,3068 0/0:90,0:90:99:0,232,2951 0/0:27,0:27:66.19:0,66,802 0/0:25,0:25:66.18:0,66,788 0/0:17,0:17:48.13:0,48,547 0/0:27,0:27:69.14:0,69,792 0/0:26,0:26:69.19:0,69,813 0/0:30,0:30:81.23:0,81,959 0/0:80,0:80:99:0,190,2301 0/0:41,0:41:99:0,102,1226 0/0:30,0:30:69.17:0,69,818 0/0:27,0:27:72.21:0,72,883 0/0:43,0:43:99:0,114,1378 0/0:72,0:72:99:0,187,2295 0/0:55,0:56:99:0,129,1520 0/0:36,0:36:96.27:0,96,1185 0/0:147,0:148:99:0,364,4672 0/0:72,0:72:99:0,172,2251 0/0:88,0:88:99:0,211,2749 0/0:59,0:59:99:0,144,1854 0/1:16,7:23:99:188,0,467 0/0:23,0:23:57.14:0,57,646 0/1:20,7:27:99:178,0,521 0/0:31,0:31:84.25:0,84,1027 0/0:31,0:31:81.19:0,81,943 0/0:64,0:64:99:0,153,1933 0/0:46,0:46:99:0,108,1329 0/0:15,0:15:42.12:0,42,508 0/0:28,0:28:75.19:0,75,883 0/0:30,0:30:81.21:0,81,969 0/0:48,0:48:99:0,111,1309 0/0:36,0:36:93.24:0,93,1104 0/0:30,0:30:81.20:0,81,962 0/0:31,0:31:81.23:0,81,1007 0/0:26,0:26:69.21:0,69,837 0/0:24,0:24:57.16:0,57,682 19 2416638 . C G 1137.61 . 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A G 1216.77 . AC=4;AF=0.048;AN=84;BaseQRankSum=-2.098;DP=1374;Dels=0.00;FS=6.659;HRun=2;HaplotypeScore=0.6436;InbreedingCoeff=-0.0500;MQ=58.98;MQ0=0;MQRankSum=0.505;QD=13.23;ReadPosRankSum=-0.134 GT:AD:DP:GQ:PL 0/1:11,10:21:99:267,0,330 0/1:13,8:21:99:199,0,398 0/0:20,0:20:54.16:0,54,663 0/0:68,0:68:99:0,175,2236 0/0:42,0:42:99:0,117,1504 0/0:38,0:38:99:0,102,1362 0/0:31,0:31:84.27:0,84,1100 0/0:50,0:50:99:0,117,1563 0/0:26,0:26:72.23:0,72,902 0/0:19,0:19:51.16:0,51,640 0/0:24,0:24:60.19:0,60,779 0/0:26,0:26:69.22:0,69,870 0/0:22,0:22:57.18:0,57,717 0/1:9,13:22:99:377,0,257 0/0:77,0:77:99:0,190,2372 0/0:31,0:31:78.24:0,78,990 0/0:29,0:29:78.24:0,78,975 0/0:15,0:15:42.12:0,42,514 0/0:51,0:51:99:0,135,1718 0/0:57,0:57:99:0,138,1788 0/0:45,0:45:99:0,117,1476 0/0:18,0:18:39.12:0,39,504 0/0:68,0:68:99:0,181,2329 0/0:25,0:25:75.24:0,75,951 0/0:45,0:45:99:0,105,1370 0/0:44,0:44:99:0,105,1403 0/0:23,0:23:63.20:0,63,796 0/0:22,0:22:60.19:0,60,746 0/1:12,16:28:99:460,0,277 0/0:28,0:28:72.23:0,72,919 0/0:20,0:20:54.17:0,54,679 0/0:47,0:47:99:0,114,1469 0/0:28,0:28:78.25:0,78,983 0/0:29,0:29:75.21:0,75,951 0/0:27,0:27:72.23:0,72,910 0/0:24,0:24:66.21:0,66,825 0/0:36,1:37:93.29:0,93,1179 0/0:31,0:31:81.24:0,81,995 0/0:26,0:26:78.23:0,78,947 0/0:13,0:13:36.09:0,36,422 0/0:30,1:31:46.44:0,46,968 0/0:25,0:25:72.22:0,72,892 19 2418031 . C T 8744.47 . 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T G 35.83 . 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G A 42.63 . AC=2;AF=0.029;AN=70;BaseQRankSum=-0.619;DP=116;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.2101;InbreedingCoeff=-0.1272;MQ=58.09;MQ0=0;MQRankSum=-0.353;QD=6.09;ReadPosRankSum=-0.682 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,70 0/0:3,0:3:9.03:0,9,106 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:6.02:0,6,76 0/0:3,0:3:3.01:0,3,45 0/0:2,0:2:6.02:0,6,73 ./. ./. 0/0:5,0:5:15.05:0,15,194 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:6.02:0,6,82 0/0:5,0:5:12.04:0,12,154 0/0:3,0:3:6.01:0,6,61 ./. 0/0:15,0:15:42.12:0,42,495 0/0:1,0:1:3.01:0,3,37 0/0:5,0:5:12.04:0,12,159 0/0:2,0:2:6.02:0,6,78 0/0:5,0:5:12.04:0,12,149 0/0:8,0:8:21.06:0,21,242 0/0:3,0:3:6.02:0,6,71 ./. ./. ./. 0/0:1,0:1:3.01:0,3,41 0/0:1,0:1:3.01:0,3,39 0/1:2,3:5:27.95:70,0,28 0/0:4,0:4:12.04:0,12,150 0/1:1,1:2:30.96:31,0,33 0/0:4,0:4:12.03:0,12,138 0/0:1,0:1:3.01:0,3,32 0/0:6,0:6:12.04:0,12,166 0/0:4,0:4:9.03:0,9,108 0/0:3,0:3:9.02:0,9,98 0/0:1,0:1:3.01:0,3,31 0/0:3,0:3:6.02:0,6,77 0/0:5,0:5:15.05:0,15,182 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,72 0/0:2,0:2:6.02:0,6,75 ./. 0/0:2,0:2:6.02:0,6,78 19 2820105 . G A 151.56 . AC=8;AF=0.571;AN=14;BaseQRankSum=-1.256;DP=15;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=58.45;MQ0=0;MQRankSum=0.437;QD=16.84;ReadPosRankSum=0.437 GT:AD:DP:GQ:PL ./. ./. 0/0:1,0:1:3.01:0,3,38 ./. ./. ./. 1/1:0,3:3:6.01:70,6,0 ./. ./. ./. ./. ./. ./. ./. ./. ./. 1/1:0,1:1:3.01:32,3,0 ./. ./. ./. 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:6.02:0,6,75 ./. ./. ./. ./. ./. ./. ./. ./. 1/1:0,1:2:3.01:35,3,0 ./. ./. ./. ./. ./. 1/1:0,3:3:6.02:69,6,0 ./. ./. ./. ./. ./. 19 2832424 . C T 97.07 . AC=2;AF=0.024;AN=84;BaseQRankSum=-31.488;DP=7001;DS;Dels=0.00;FS=1843.933;HRun=2;HaplotypeScore=5.4365;InbreedingCoeff=-0.0310;MQ=59.27;MQ0=0;MQRankSum=-0.918;QD=0.24;ReadPosRankSum=-24.202 GT:AD:DP:GQ:PL 0/0:112,18:130:99:0,211,3704 0/0:118,28:146:18.52:0,19,3249 0/0:121,11:132:99:0,268,3762 0/0:197,29:226:99:0,325,6363 0/0:197,31:229:99:0,260,6183 0/0:181,18:199:99:0,396,6059 0/0:164,23:187:99:0,336,5248 0/0:188,20:208:99:0,386,6318 0/0:127,26:154:99:0,262,4023 0/0:127,12:142:99:0,205,3930 0/0:122,9:132:99:0,215,3738 0/0:143,26:169:99:0,165,4217 0/0:101,24:125:99:0,172,2998 0/0:135,28:164:99:0,220,4033 0/0:214,36:250:99:0,257,6580 0/0:95,19:114:97.15:0,97,2823 0/0:120,23:143:70.36:0,70,3639 0/0:120,22:142:99:0,194,3651 0/1:160,42:202:32.98:33,0,5023 0/0:210,14:224:99:0,485,6263 0/1:157,42:199:99:126,0,4617 0/0:152,17:169:99:0,334,4526 0/0:206,19:225:99:0,410,6481 0/0:166,21:187:99:0,225,5244 0/0:176,18:196:99:0,404,5894 0/0:170,25:196:99:0,330,5554 0/0:75,15:90:2.89:0,0,2107 0/0:118,11:129:99:0,284,3671 0/0:118,21:139:99:0,177,3549 0/0:126,21:147:99:0,155,4125 0/0:90,17:107:99:0,115,2719 0/0:214,16:230:99:0,559,6741 0/0:174,13:187:99:0,422,5559 0/0:117,15:132:99:0,224,3663 0/0:131,17:148:99:0,196,4030 0/0:135,20:155:99:0,176,4089 0/0:187,26:213:99:0,332,5828 0/0:135,18:154:99:0,262,4143 0/0:129,16:145:99:0,319,4220 0/0:110,17:127:92.45:0,92,3313 0/0:126,19:145:99:0,258,3974 0/0:143,19:163:99:0,226,4541 19 2916111 . T G 4752.08 . 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A C 95.20 . 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C T 154.67 . 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T C 2513.90 . 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G A 2723.69 . AC=27;AF=0.321;AN=84;BaseQRankSum=8.491;DP=423;Dels=0.00;FS=4.763;HRun=0;HaplotypeScore=0.2690;InbreedingCoeff=-0.2133;MQ=58.48;MQ0=0;MQRankSum=-1.095;QD=10.48;ReadPosRankSum=0.444 GT:AD:DP:GQ:PL 0/0:12,0:12:33.09:0,33,360 0/0:17,0:17:45.11:0,45,504 0/0:15,0:15:39.10:0,39,438 0/1:8,2:10:45.07:45,0,235 0/1:5,2:7:54.54:55,0,142 0/1:6,5:11:99:152,0,152 0/0:12,0:12:27.09:0,27,361 0/1:5,2:7:51.98:52,0,159 0/0:11,0:11:33.08:0,33,363 0/0:12,0:12:33.07:0,33,351 0/0:9,0:9:24.06:0,24,275 0/0:6,0:6:15.04:0,15,177 0/1:5,6:11:99:163,0,145 0/0:11,0:11:27.07:0,27,300 0/1:14,13:27:99:319,0,375 1/1:0,7:7:18.06:224,18,0 0/0:9,0:9:27.07:0,27,301 0/0:8,0:8:24.07:0,24,269 0/1:12,5:17:99:128,0,251 0/1:10,10:20:99:229,0,221 0/1:7,6:13:99:154,0,172 0/1:5,6:11:99:125,0,132 0/0:9,0:9:24.07:0,24,285 0/0:4,0:4:12.03:0,12,135 0/1:7,1:8:15.07:15,0,188 0/1:0,2:2:1.76:45,3,0 0/1:4,2:6:56.34:56,0,89 0/1:3,6:9:77.37:145,0,77 0/0:3,0:3:9.03:0,9,102 0/1:6,4:10:89.83:90,0,180 0/1:3,3:6:74.68:80,0,75 0/1:9,8:17:99:212,0,194 0/0:11,0:11:30.08:0,30,327 0/1:2,2:4:57.53:58,0,64 0/0:7,0:7:21.04:0,21,232 0/1:7,2:9:47.70:48,0,211 0/1:5,4:9:90.76:105,0,91 0/0:7,0:7:18.05:0,18,209 0/1:8,6:14:99:146,0,179 1/1:0,5:5:15.05:180,15,0 0/1:7,1:8:16.74:17,0,188 0/1:9,3:12:76.40:76,0,267 19 3005474 . C T 1632.18 . 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C T 54694.65 . 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G T 10819.21 . 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T C 16945.18 . AC=9;AF=0.107;AN=84;BaseQRankSum=-16.273;DP=6059;DS;Dels=0.00;FS=3.617;HRun=1;HaplotypeScore=5.6945;InbreedingCoeff=0.1289;MQ=59.05;MQ0=1;MQRankSum=-0.294;QD=15.10;ReadPosRankSum=-1.980 GT:AD:DP:GQ:PL 0/0:109,0:109:99:0,295,3609 0/0:121,0:121:99:0,334,4033 0/0:92,1:93:99:0,236,3215 0/0:238,0:238:99:0,683,8287 0/0:211,0:212:99:0,560,6976 0/1:119,91:213:99:2364,0,3273 1/1:0,177:178:99:5609,454,0 0/0:198,0:198:99:0,521,6485 0/0:108,0:108:99:0,295,3587 0/0:121,0:121:99:0,328,4003 0/0:109,0:109:99:0,307,3712 0/0:117,0:117:99:0,307,3776 0/0:89,0:89:99:0,238,2882 0/0:118,0:118:99:0,319,3888 0/1:119,130:249:99:3149,0,3210 0/0:106,0:106:99:0,289,3497 0/1:51,57:108:99:1446,0,1391 0/0:86,0:86:99:0,229,2824 0/0:218,0:218:99:0,533,6596 0/0:208,0:208:99:0,542,6652 0/0:219,0:219:99:0,554,6813 0/0:146,0:146:99:0,391,4755 0/0:235,0:235:99:0,650,8051 0/0:220,1:221:99:0,551,6986 0/0:214,0:214:99:0,548,6925 0/0:193,0:193:99:0,487,6142 0/1:44,44:88:99:1049,0,1279 0/1:41,39:80:99:993,0,1188 0/0:87,0:87:99:0,247,2969 0/0:123,0:123:99:0,340,4111 0/0:107,0:107:99:0,301,3674 0/0:199,1:200:99:0,521,6454 0/0:162,0:162:99:0,433,5259 0/0:92,0:92:99:0,256,3105 0/0:103,0:103:99:0,286,3467 0/0:92,0:93:99:0,256,3127 0/0:185,0:186:99:0,469,5672 0/0:99,0:99:99:0,274,3362 0/0:105,0:105:99:0,295,3595 0/1:61,43:104:99:1071,0,1613 0/0:99,0:100:99:0,256,3149 0/1:50,51:102:99:1265,0,1476 19 3281298 . G A 29806.52 . AC=17;AF=0.202;AN=84;BaseQRankSum=5.653;DP=3806;Dels=0.00;FS=8.927;HRun=0;HaplotypeScore=2.5910;InbreedingCoeff=0.0413;MQ=58.94;MQ0=0;MQRankSum=-0.627;QD=16.98;ReadPosRankSum=3.592 GT:AD:DP:GQ:PL 0/1:29,39:68:99:1110,0,731 0/0:61,0:61:99:0,168,1934 0/0:71,1:72:99:0,165,2246 1/1:0,195:195:99:6211,512,0 0/1:80,80:160:99:2104,0,2225 0/1:62,57:119:99:1534,0,1730 0/1:39,66:105:99:1783,0,969 0/0:123,0:123:99:0,328,4090 0/0:54,0:54:99:0,147,1694 0/0:49,0:49:99:0,129,1476 0/1:39,19:58:99:480,0,1065 0/0:58,0:58:99:0,159,1851 0/0:48,0:48:99:0,132,1534 0/1:33,33:66:99:915,0,826 0/1:121,122:243:99:2929,0,3015 0/0:78,0:78:99:0,214,2455 0/1:34,39:73:99:1073,0,750 0/0:49,0:49:99:0,135,1542 0/0:109,0:110:99:0,295,3362 0/1:78,63:141:99:1656,0,2055 0/0:133,0:133:99:0,358,4130 0/0:95,0:95:99:0,259,2986 0/1:101,96:199:99:2641,0,2779 0/0:83,0:83:99:0,241,2945 0/0:109,0:109:99:0,292,3585 0/0:105,0:105:99:0,280,3489 0/0:45,0:46:99:0,129,1475 0/0:66,1:67:99:0,164,2064 0/0:59,0:59:99:0,153,1803 0/0:68,0:68:99:0,186,2122 0/0:61,0:61:99:0,168,1936 0/0:127,0:127:99:0,328,3850 0/0:85,0:85:99:0,232,2615 0/0:68,0:68:99:0,177,2054 0/1:31,34:65:99:962,0,849 0/0:66,0:66:99:0,180,2084 1/1:0,136:136:99:4413,370,0 0/1:26,35:61:99:1020,0,591 0/1:32,34:66:99:974,0,845 0/0:65,0:65:99:0,180,2109 0/0:50,0:50:99:0,141,1601 0/0:62,0:62:99:0,174,1975 19 3435173 . G C 10.92 . 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T C 54.89 . 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G T 1121.21 . 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G A 202.28 . 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C G 1108.52 . 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C T 591.55 . 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C T 145.76 . 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G A 12904.64 . AC=12;AF=0.143;AN=84;BaseQRankSum=-26.899;DP=3741;Dels=0.00;FS=9.639;HRun=0;HaplotypeScore=2.1993;InbreedingCoeff=-0.1667;MQ=59.17;MQ0=0;MQRankSum=-0.134;QD=12.17;ReadPosRankSum=0.785 GT:AD:DP:GQ:PL 0/0:61,0:61:99:0,175,2228 0/0:59,0:59:99:0,163,2072 0/0:77,0:77:99:0,220,2803 0/0:170,0:170:99:0,485,6503 0/0:147,0:147:99:0,421,5743 0/0:108,0:108:99:0,310,4203 0/0:95,0:95:99:0,268,3630 0/1:65,40:105:99:1108,0,2199 0/0:72,0:72:99:0,205,2588 0/0:87,0:87:99:0,250,3185 0/1:27,21:48:99:539,0,749 0/1:40,23:63:99:582,0,1267 0/0:54,0:54:99:0,150,1907 0/1:26,18:44:99:425,0,831 0/1:113,108:224:99:2879,0,3221 0/1:32,23:55:99:629,0,927 0/1:33,33:66:99:926,0,968 0/0:60,0:60:99:0,166,2087 0/0:147,0:147:99:0,400,5123 0/0:142,0:142:99:0,385,4899 0/0:152,0:152:99:0,397,5093 0/0:84,0:84:99:0,214,2765 0/1:96,87:183:99:2364,0,3194 0/0:116,0:116:99:0,310,4300 0/0:125,1:126:99:0,310,4656 0/0:91,0:91:99:0,247,3324 0/0:40,0:40:99:0,111,1432 0/0:55,0:55:99:0,153,1955 0/1:28,23:51:99:590,0,838 0/1:32,34:66:99:938,0,831 0/1:39,29:68:99:809,0,1237 0/0:121,0:121:99:0,316,4111 0/1:46,41:87:99:1116,0,1349 0/0:61,0:61:99:0,181,2271 0/0:71,0:71:99:0,199,2518 0/0:57,0:57:99:0,163,2086 0/0:125,0:125:99:0,334,4275 0/0:54,0:54:99:0,135,1716 0/0:61,0:61:99:0,166,2153 0/0:55,0:56:99:0,156,1976 0/0:64,0:64:99:0,184,2319 0/0:66,0:66:99:0,181,2326 19 3595794 . A G 9343.80 . AC=47;AF=0.560;AN=84;BaseQRankSum=11.288;DP=525;Dels=0.00;FS=0.666;HRun=0;HaplotypeScore=0.1628;InbreedingCoeff=0.1920;MQ=58.64;MQ0=0;MQRankSum=-0.184;QD=24.27;ReadPosRankSum=0.852 GT:AD:DP:GQ:PL 1/1:0,10:10:30.09:359,30,0 1/1:0,13:13:36.11:438,36,0 0/1:4,3:7:87.64:88,0,97 1/1:0,18:18:54.17:682,54,0 0/1:10,8:18:99:224,0,288 1/1:0,23:23:57.17:729,57,0 0/1:8,7:15:99:221,0,209 1/1:0,3:3:9.03:125,9,0 0/1:7,5:12:99:142,0,172 1/1:0,10:10:27.08:336,27,0 0/0:12,0:12:36.10:0,36,415 1/1:0,7:7:18.06:226,18,0 1/1:0,14:14:36.10:443,36,0 0/1:2,16:18:2.82:464,0,0 0/0:24,0:24:60.18:0,60,706 0/0:17,0:17:45.13:0,45,521 0/1:3,8:11:75.29:260,0,75 0/0:13,0:13:39.11:0,39,448 0/0:13,0:13:39.11:0,39,449 0/0:18,0:18:51.15:0,51,586 1/1:0,19:19:57.17:690,57,0 1/1:0,5:5:15.05:193,15,0 1/1:0,14:14:42.14:552,42,0 0/1:4,5:9:99:155,0,115 0/0:19,0:19:54.15:0,54,621 1/1:0,11:11:33.10:425,33,0 0/0:5,0:5:15.05:0,15,183 0/1:3,3:6:86.96:87,0,89 0/0:8,0:8:24.06:0,24,269 0/1:6,3:9:83.73:84,0,183 0/1:9,4:13:99:114,0,237 0/1:10,15:25:99:485,0,227 0/1:2,2:4:49.79:60,0,50 0/1:7,6:13:99:180,0,192 0/1:6,6:12:99:171,0,153 1/1:0,8:8:18.04:200,18,0 0/1:9,7:16:99:149,0,244 0/0:11,0:11:30.08:0,30,341 1/1:0,18:18:54.16:651,54,0 1/1:0,8:8:21.07:265,21,0 0/1:4,1:5:21.93:22,0,122 0/1:6,5:11:99:122,0,182 19 3595923 . G A 828.12 . AC=13;AF=0.155;AN=84;BaseQRankSum=-4.493;DP=292;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0979;InbreedingCoeff=-0.1964;MQ=58.54;MQ0=0;MQRankSum=0.238;QD=10.22;ReadPosRankSum=0.018 GT:AD:DP:GQ:PL 0/0:7,0:7:21.07:0,21,263 0/0:10,0:10:30.09:0,30,372 0/1:3,3:6:85.30:89,0,85 0/0:10,0:10:30.10:0,30,388 0/1:5,2:7:50.32:50,0,176 0/0:7,0:7:21.06:0,21,262 0/0:10,0:10:27.09:0,27,353 0/0:7,0:7:15.05:0,15,198 0/1:3,5:8:81.93:149,0,82 0/0:4,0:4:12.03:0,12,147 0/1:1,2:3:28.33:28,0,33 0/0:5,0:5:15.05:0,15,185 0/0:2,0:2:6.01:0,6,66 0/0:5,0:5:15.05:0,15,188 0/0:15,0:15:45.10:0,45,512 0/0:6,0:6:18.05:0,18,212 0/0:5,0:5:15.04:0,15,176 0/0:3,0:3:9.03:0,9,110 0/0:8,0:8:21.06:0,21,257 0/0:10,0:10:30.09:0,30,371 0/0:5,0:5:15.04:0,15,176 0/0:5,0:5:15.05:0,15,183 0/0:14,0:14:42.13:0,42,540 0/1:4,2:6:20.20:20,0,144 0/1:6,7:13:99:214,0,176 0/0:5,0:5:15.05:0,15,190 0/1:1,3:4:26.54:94,0,27 0/0:4,0:4:12.04:0,12,142 0/1:2,2:4:56.59:60,0,57 0/0:5,0:5:15.05:0,15,183 0/0:5,0:5:15.05:0,15,193 0/0:14,0:14:42.10:0,42,489 0/1:2,3:5:56.65:57,0,64 0/0:9,0:9:27.07:0,27,312 0/0:4,0:4:12.03:0,12,134 0/0:11,0:11:30.09:0,30,363 0/1:7,4:11:70.07:70,0,197 0/1:3,2:5:57.19:57,0,95 0/0:10,0:10:27.06:0,27,323 0/0:6,0:6:18.05:0,18,219 0/1:2,2:4:61.07:61,0,63 0/1:3,2:5:25.76:26,0,91 19 3731985 . G A 8587.94 . AC=20;AF=0.238;AN=84;BaseQRankSum=3.199;DP=1619;Dels=0.00;FS=0.234;HRun=0;HaplotypeScore=0.8639;InbreedingCoeff=-0.1813;MQ=59.29;MQ0=0;MQRankSum=1.646;QD=12.56;ReadPosRankSum=-0.367 GT:AD:DP:GQ:PL 0/0:31,0:31:78.23:0,78,947 0/1:29,16:45:99:434,0,727 0/1:13,16:29:99:467,0,346 0/0:75,0:75:99:0,178,2304 0/1:33,18:51:99:512,0,992 0/1:28,13:41:99:318,0,812 0/0:38,0:38:93.25:0,93,1167 0/1:23,14:37:99:386,0,678 0/0:31,0:31:84.26:0,84,1048 0/0:34,0:34:84.22:0,84,1022 0/0:32,0:32:87.26:0,87,1080 0/0:49,0:49:99:0,123,1508 0/0:33,0:33:78.24:0,78,1004 0/1:11,17:28:99:448,0,266 0/0:97,0:97:99:0,235,2954 0/1:11,10:21:99:283,0,330 0/0:31,0:31:90.24:0,90,1053 0/0:27,0:27:63.19:0,63,797 0/1:28,19:47:99:545,0,801 0/1:28,28:56:99:809,0,714 0/1:27,20:47:99:507,0,783 0/0:33,0:33:90.24:0,90,1065 0/0:66,0:66:99:0,166,2193 0/0:24,0:24:63.20:0,63,835 0/0:54,0:54:99:0,138,1805 0/1:14,11:25:99:313,0,437 0/0:33,0:33:87.26:0,87,1083 0/0:39,0:39:99:0,108,1312 0/1:23,16:39:99:360,0,694 0/1:11,10:21:99:315,0,310 1/1:0,28:28:81.26:1022,81,0 0/1:33,19:52:99:550,0,758 0/1:23,9:32:99:224,0,656 0/0:27,0:27:75.22:0,75,910 0/0:37,1:38:56.97:0,57,1128 0/0:32,0:33:87.25:0,87,1041 0/0:35,0:35:87.24:0,87,1025 0/0:41,0:42:99:0,99,1234 0/1:15,12:28:99:369,0,386 0/1:22,10:32:99:274,0,508 0/1:10,15:25:99:452,0,294 0/0:32,0:32:87.26:0,87,1066 19 3734330 . T A 1017.41 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.042;DP=1840;Dels=0.00;FS=0.581;HRun=0;HaplotypeScore=1.0404;InbreedingCoeff=-0.0120;MQ=59.11;MQ0=0;MQRankSum=0.505;QD=13.04;ReadPosRankSum=1.506 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,129,1560 0/0:25,0:25:72.21:0,72,871 0/0:41,1:42:76.09:0,76,1308 0/0:70,0:70:99:0,181,2236 0/0:60,0:60:99:0,163,2042 0/0:58,0:58:99:0,166,2073 0/0:44,0:44:99:0,120,1495 0/0:46,0:46:99:0,120,1501 0/0:40,0:41:99:0,111,1346 0/0:41,0:41:99:0,105,1294 0/0:26,0:26:72.19:0,72,860 0/0:33,0:33:90.25:0,90,1075 0/0:31,0:31:87.26:0,87,1050 0/0:29,0:29:84.25:0,84,997 0/0:131,0:131:99:0,352,4306 0/0:40,0:40:99:0,108,1325 0/0:38,0:38:99:0,108,1325 0/0:37,0:37:99:0,102,1230 0/0:62,0:62:99:0,175,2109 0/1:37,41:78:99:1064,0,1006 0/0:41,0:41:99:0,111,1368 0/0:39,0:39:99:0,105,1279 0/0:86,0:87:99:0,226,2837 0/0:30,0:30:84.26:0,84,1053 0/0:53,0:54:99:0,141,1765 0/0:38,0:38:99:0,105,1317 0/0:33,0:33:93.28:0,93,1137 0/0:32,0:32:90.27:0,90,1086 0/0:33,0:33:87.27:0,87,1100 0/0:34,0:35:90.28:0,90,1105 0/0:29,0:29:78.24:0,78,943 0/0:42,0:42:99:0,111,1345 0/0:32,0:32:84.23:0,84,1021 0/0:36,0:36:99:0,99,1246 0/0:24,0:24:66.20:0,66,821 0/0:41,0:41:99:0,120,1464 0/0:47,0:47:99:0,117,1454 0/0:40,0:40:99:0,108,1326 0/0:34,0:34:99:0,99,1188 0/0:42,0:42:99:0,111,1341 0/0:29,0:29:84.26:0,84,1021 0/0:43,0:43:99:0,123,1525 19 3747890 . C T 764.57 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.480;DP=1119;Dels=0.00;FS=5.609;HRun=0;HaplotypeScore=1.0451;InbreedingCoeff=-0.0245;MQ=58.82;MQ0=0;MQRankSum=3.657;QD=9.56;ReadPosRankSum=-0.841 GT:AD:DP:GQ:PL 0/0:26,0:26:54.16:0,54,673 0/0:12,0:12:27.08:0,27,321 0/0:26,0:26:57.14:0,57,644 0/0:57,0:58:99:0,123,1647 0/0:46,0:46:99:0,120,1498 0/1:23,17:40:99:439,0,561 0/1:25,15:40:99:388,0,616 0/0:36,0:36:90.21:0,90,1065 0/0:12,0:12:27.07:0,27,303 0/0:15,0:15:39.11:0,39,452 0/0:11,0:11:30.07:0,30,330 0/0:14,0:14:33.07:0,33,365 0/0:19,0:19:42.12:0,42,508 0/0:24,0:24:66.12:0,66,716 0/0:65,0:65:99:0,153,1792 0/0:22,0:22:57.16:0,57,686 0/0:13,0:13:33.09:0,33,390 0/0:15,0:15:36.10:0,36,408 0/0:24,0:24:51.13:0,51,573 0/0:56,0:57:99:0,153,1761 0/0:35,0:35:93.23:0,93,1041 0/0:26,0:26:72.17:0,72,787 0/0:65,0:65:99:0,159,2008 0/0:31,0:31:72.22:0,72,916 0/0:28,0:28:72.21:0,72,877 0/0:33,0:33:78.22:0,78,1000 0/0:14,0:14:39.11:0,39,446 0/0:29,0:29:75.16:0,75,851 0/0:18,0:18:48.14:0,48,568 0/0:13,0:13:36.11:0,36,431 0/0:16,0:16:45.13:0,45,524 0/0:44,0:44:99:0,105,1198 0/0:28,0:28:78.19:0,78,890 0/0:16,0:16:39.11:0,39,448 0/0:22,0:22:51.15:0,51,611 0/0:13,0:13:36.10:0,36,421 0/0:26,0:26:72.16:0,72,804 0/0:20,1:21:54.14:0,54,619 0/0:16,0:16:39.08:0,39,423 0/0:18,0:19:48.13:0,48,573 0/0:12,0:12:30.05:0,30,327 0/0:19,0:19:54.15:0,54,619 19 3747910 . G A 518.24 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.157;DP=1076;Dels=0.00;FS=0.801;HRun=0;HaplotypeScore=1.1814;InbreedingCoeff=-0.0245;MQ=58.87;MQ0=0;MQRankSum=-0.304;QD=7.62;ReadPosRankSum=2.029 GT:AD:DP:GQ:PL 0/0:20,0:20:48.16:0,48,627 0/0:15,0:15:42.13:0,42,533 0/0:19,0:19:51.13:0,51,624 0/0:56,0:56:99:0,138,1837 0/0:49,0:49:99:0,126,1605 0/1:20,15:35:99:336,0,595 0/1:22,11:33:99:245,0,619 0/0:36,0:36:96.26:0,96,1236 0/0:12,0:12:24.08:0,24,306 0/0:18,0:18:48.15:0,48,605 0/0:10,0:10:27.09:0,27,347 0/0:20,0:20:54.15:0,54,661 0/0:20,0:20:51.16:0,51,664 0/0:21,0:21:54.17:0,54,674 0/0:63,0:63:99:0,150,1859 0/0:24,0:24:57.18:0,57,739 0/0:11,0:11:33.09:0,33,392 0/0:11,0:11:33.09:0,33,402 0/0:33,0:34:84.23:0,84,989 0/0:58,0:58:99:0,135,1731 0/0:35,0:35:90.28:0,90,1129 0/0:20,0:20:57.17:0,57,690 0/0:59,0:59:99:0,153,1973 0/0:35,0:35:78.24:0,78,1028 0/0:23,0:23:63.15:0,63,755 0/0:35,0:35:78.22:0,78,1020 0/0:13,0:13:36.09:0,36,437 0/0:23,0:23:63.20:0,63,793 0/0:12,0:12:33.08:0,33,406 0/0:18,0:18:45.15:0,45,590 0/0:14,0:14:39.12:0,39,493 0/0:36,0:37:90.28:0,90,1142 0/0:29,0:29:84.25:0,84,1021 0/0:13,1:14:39.12:0,39,488 0/0:18,0:18:42.12:0,42,538 0/0:12,0:12:33.11:0,33,421 0/0:37,0:37:93.25:0,93,1129 0/0:19,0:19:45.11:0,45,562 0/0:15,0:15:39.12:0,39,483 0/0:18,0:18:45.14:0,45,581 0/0:11,0:11:30.09:0,30,368 0/0:14,0:14:39.12:0,39,497 19 3750615 . T C 10590.23 . AC=45;AF=0.536;AN=84;BaseQRankSum=-4.563;DP=756;Dels=0.00;FS=4.760;HRun=0;HaplotypeScore=0.4155;InbreedingCoeff=0.1829;MQ=58.42;MQ0=0;MQRankSum=-0.538;QD=20.41;ReadPosRankSum=0.109 GT:AD:DP:GQ:PL 0/1:3,10:13:68.88:254,0,69 1/1:0,13:13:36.10:395,36,0 1/1:0,20:20:51.14:598,51,0 1/1:0,14:14:36.12:474,36,0 1/1:0,14:14:39.13:524,39,0 0/0:4,0:4:12.04:0,12,150 0/1:3,3:6:93.49:97,0,93 0/0:11,0:11:27.08:0,27,345 1/1:0,23:23:60.18:728,60,0 0/1:15,3:18:38.75:39,0,414 1/1:0,21:21:60.15:683,60,0 0/1:11,5:16:99:128,0,332 0/1:11,5:16:99:124,0,333 0/1:7,7:14:99:203,0,217 0/0:68,0:68:99:0,165,2060 0/1:8,3:11:44.30:44,0,232 0/1:10,6:16:99:132,0,255 0/1:18,7:25:99:148,0,527 0/1:13,11:24:99:293,0,371 0/1:13,19:32:99:425,0,325 0/0:30,0:30:81.23:0,81,974 0/0:23,0:23:66.20:0,66,792 1/1:0,20:20:51.16:663,51,0 0/0:11,0:11:30.09:0,30,373 0/0:18,0:18:42.13:0,42,539 0/1:4,5:9:99:133,0,119 0/1:8,7:15:99:142,0,249 0/0:16,0:16:42.13:0,42,525 0/1:7,5:12:99:151,0,190 0/1:8,4:12:99:111,0,204 0/0:8,0:8:24.08:0,24,296 0/0:28,0:28:78.24:0,78,964 1/1:0,16:16:48.13:550,48,0 1/1:0,22:22:57.17:689,57,0 0/1:15,11:26:99:293,0,418 1/1:0,17:17:48.14:560,48,0 1/1:0,19:19:51.14:580,51,0 1/1:0,11:11:30.03:331,30,0 1/1:0,10:10:30.09:355,30,0 0/1:8,6:14:99:128,0,214 1/1:0,20:20:54.14:616,54,0 0/0:20,0:20:54.17:0,54,667 19 3750622 . A C 12058.09 . AC=47;AF=0.560;AN=84;BaseQRankSum=15.016;DP=768;Dels=0.00;FS=9.074;HRun=1;HaplotypeScore=0.4410;InbreedingCoeff=0.1778;MQ=58.52;MQ0=0;MQRankSum=0.444;QD=22.41;ReadPosRankSum=-1.691 GT:AD:DP:GQ:PL 0/1:3,12:15:73.12:323,0,73 1/1:0,17:17:45.11:559,45,0 1/1:0,18:18:51.16:656,51,0 1/1:0,15:15:36.12:490,36,0 1/1:0,15:15:36.12:498,36,0 0/1:3,1:4:29.72:30,0,100 1/1:0,6:6:18.06:239,18,0 0/0:11,0:11:27.08:0,27,336 1/1:0,22:22:57.17:720,57,0 0/1:13,3:16:41.21:41,0,391 1/1:0,19:19:57.17:701,57,0 0/1:9,6:15:99:154,0,254 0/1:8,5:13:99:155,0,236 0/1:6,8:14:99:263,0,167 0/0:68,0:68:99:0,168,2048 0/1:9,4:13:99:113,0,229 0/1:10,7:17:99:182,0,258 0/1:17,8:25:99:203,0,465 0/1:14,12:26:99:302,0,389 0/1:14,18:32:99:501,0,335 0/0:27,0:27:75.21:0,75,898 0/0:24,0:24:63.18:0,63,731 1/1:0,20:20:51.16:683,51,0 0/0:11,0:11:30.09:0,30,357 0/0:16,0:16:39.12:0,39,487 0/1:5,6:11:99:170,0,146 0/1:9,6:15:99:147,0,257 0/0:16,0:16:45.12:0,45,522 0/1:8,6:14:99:164,0,215 0/1:8,6:14:99:175,0,216 0/0:8,0:8:24.07:0,24,278 0/0:27,0:27:75.21:0,75,894 1/1:0,16:16:45.12:561,45,0 1/1:0,25:25:66.18:828,66,0 0/1:15,11:26:99:322,0,423 1/1:0,14:14:36.09:426,36,0 1/1:0,19:19:54.17:687,54,0 1/1:0,11:11:30.09:378,30,0 1/1:0,13:13:36.12:467,36,0 0/1:8,9:17:99:225,0,234 1/1:0,21:21:54.17:693,54,0 0/0:22,0:22:57.16:0,57,673 19 3754020 . G C 46.44 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.853;DP=576;Dels=0.00;FS=4.777;HRun=0;HaplotypeScore=0.4822;InbreedingCoeff=-0.0140;MQ=58.00;MQ0=0;MQRankSum=2.018;QD=4.64;ReadPosRankSum=-1.500 GT:AD:DP:GQ:PL 0/0:15,0:15:42.12:0,42,526 0/0:14,0:14:33.10:0,33,431 0/0:9,0:9:24.07:0,24,300 0/0:21,0:21:57.18:0,57,755 0/0:15,0:15:36.11:0,36,483 0/0:11,0:11:18.06:0,18,242 0/0:9,0:9:21.07:0,21,278 0/0:16,0:16:39.13:0,39,532 0/0:19,0:19:51.16:0,51,658 0/0:8,0:8:18.06:0,18,231 0/0:14,0:14:39.11:0,39,490 0/0:13,0:13:30.09:0,30,374 0/0:11,0:11:30.09:0,30,385 0/1:4,6:10:87.02:93,0,87 0/0:37,0:37:90.26:0,90,1097 0/0:16,0:16:45.13:0,45,559 0/0:7,0:7:21.07:0,21,265 0/0:7,0:7:21.07:0,21,264 0/0:13,0:13:36.11:0,36,453 0/0:16,0:16:45.14:0,45,566 0/0:18,0:18:42.13:0,42,515 0/0:17,0:17:45.14:0,45,576 0/0:18,0:18:51.17:0,51,685 0/0:6,0:6:18.06:0,18,251 0/0:12,0:12:33.10:0,33,423 0/0:7,0:7:12.04:0,12,160 0/0:10,0:10:27.06:0,27,319 0/0:13,0:13:36.11:0,36,446 0/0:14,0:14:36.11:0,36,450 0/0:12,0:12:36.11:0,36,441 0/0:14,0:14:42.11:0,42,516 0/0:16,0:16:39.12:0,39,491 0/0:17,0:17:48.15:0,48,596 0/0:12,0:12:33.08:0,33,406 0/0:13,0:13:36.10:0,36,450 0/0:12,0:12:24.08:0,24,312 0/0:21,0:21:48.13:0,48,594 0/0:14,0:14:42.12:0,42,507 0/0:13,0:13:30.09:0,30,357 0/0:16,0:16:48.13:0,48,561 0/0:8,0:8:18.06:0,18,244 0/0:12,0:12:30.07:0,30,373 19 3754071 . C A 384.29 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.868;DP=576;Dels=0.00;FS=3.843;HRun=0;HaplotypeScore=0.4790;InbreedingCoeff=-0.0285;MQ=58.48;MQ0=0;MQRankSum=0.909;QD=11.30;ReadPosRankSum=0.222 GT:AD:DP:GQ:PL 0/0:15,0:15:39.12:0,39,488 0/0:12,0:12:33.09:0,33,392 0/0:9,0:9:27.09:0,27,347 0/0:31,0:31:72.23:0,72,972 0/0:13,0:13:30.10:0,30,416 0/0:12,0:12:30.07:0,30,371 0/0:10,0:10:24.08:0,24,323 0/0:20,0:20:51.17:0,51,696 0/0:10,0:10:30.09:0,30,371 0/0:9,0:9:27.07:0,27,324 0/0:11,0:11:30.10:0,30,385 0/0:12,0:12:33.11:0,33,424 0/0:6,0:6:18.06:0,18,223 0/0:12,0:12:27.09:0,27,366 0/0:36,0:36:93.28:0,93,1167 0/0:17,0:17:51.16:0,51,630 0/0:12,0:12:24.08:0,24,325 0/0:3,0:3:9.03:0,9,119 0/0:15,0:15:36.11:0,36,463 0/0:15,0:15:42.13:0,42,541 0/0:15,0:15:39.12:0,39,492 0/0:20,0:20:54.17:0,54,692 0/0:28,0:28:72.23:0,72,977 0/0:4,0:4:9.03:0,9,129 0/0:12,0:12:27.09:0,27,361 0/0:8,0:8:18.06:0,18,248 0/0:11,0:11:30.09:0,30,382 0/0:12,0:12:33.11:0,33,423 0/0:11,0:11:30.09:0,30,376 0/0:7,0:7:18.06:0,18,233 0/0:12,0:12:30.09:0,30,378 0/0:13,0:13:30.09:0,30,381 0/0:16,0:16:42.13:0,42,538 0/1:8,7:15:99:208,0,227 0/0:10,0:10:24.08:0,24,310 0/1:10,9:19:99:239,0,269 0/0:28,0:28:69.22:0,69,899 0/0:11,0:11:30.09:0,30,366 0/0:11,0:11:30.09:0,30,373 0/0:19,0:19:54.17:0,54,681 0/0:8,0:8:18.06:0,18,236 0/0:6,0:6:18.06:0,18,229 19 3771586 . G A 205.32 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.344;DP=612;Dels=0.00;FS=4.924;HRun=0;HaplotypeScore=1.3097;InbreedingCoeff=-0.0354;MQ=59.02;MQ0=0;MQRankSum=-1.447;QD=9.78;ReadPosRankSum=0.555 GT:AD:DP:GQ:PL 0/1:2,10:12:41.12:231,0,41 0/1:7,2:9:35.63:36,0,172 0/0:12,0:12:27.08:0,27,326 0/0:34,0:34:90.24:0,90,1056 0/0:24,0:24:72.21:0,72,858 0/0:15,0:16:36.10:0,36,423 0/0:9,0:9:24.07:0,24,300 0/0:12,0:12:33.08:0,33,380 0/0:11,0:11:30.09:0,30,353 0/0:10,0:11:30.07:0,30,332 0/0:8,0:8:24.06:0,24,262 0/0:8,0:8:21.05:0,21,242 0/0:10,0:10:24.06:0,24,276 0/0:8,0:8:21.02:0,21,219 0/0:38,0:38:99:0,99,1096 0/0:14,0:14:42.09:0,42,454 0/0:16,0:17:42.10:0,42,492 0/0:13,0:13:39.11:0,39,454 0/0:9,0:9:24.07:0,24,288 0/0:18,0:18:39.10:0,39,452 0/0:14,0:15:39.09:0,39,446 0/0:11,0:11:27.07:0,27,308 0/0:38,0:38:99:0,99,1139 0/0:16,0:17:45.13:0,45,538 0/0:17,0:17:48.13:0,48,561 0/0:13,0:13:39.09:0,39,449 0/0:10,0:11:24.06:0,24,258 0/0:15,0:15:30.06:0,30,328 0/0:13,0:14:33.09:0,33,380 0/0:6,0:6:15.03:0,15,156 0/0:11,0:11:24.03:0,24,252 0/0:22,0:22:63.15:0,63,727 0/0:16,0:16:42.10:0,42,482 0/0:14,0:14:30.08:0,30,357 0/0:15,0:15:42.12:0,42,497 0/0:8,0:8:24.04:0,24,257 0/0:13,1:14:1.08:5,0,314 0/0:14,0:14:42.10:0,42,479 0/0:18,0:18:45.13:0,45,525 0/0:8,0:8:21.05:0,21,248 0/0:8,0:8:24.05:0,24,258 0/0:13,0:13:33.09:0,33,366 19 3977486 . A G 12984.92 . AC=71;AF=0.845;AN=84;BaseQRankSum=0.894;DP=482;Dels=0.00;FS=7.567;HRun=0;HaplotypeScore=0.4574;InbreedingCoeff=-0.0211;MQ=58.16;MQ0=0;MQRankSum=0.086;QD=27.34;ReadPosRankSum=0.575 GT:AD:DP:GQ:PL 0/1:3,4:7:81.95:111,0,82 0/1:7,7:14:99:157,0,187 1/1:0,7:7:18.03:201,18,0 1/1:0,28:29:75.23:947,75,0 1/1:0,14:14:33.08:418,33,0 0/1:13,10:23:99:310,0,352 0/1:3,5:9:82.43:161,0,82 1/1:0,14:14:39.12:501,39,0 0/1:7,8:15:99:220,0,180 0/0:7,0:7:12.03:0,12,147 1/1:0,4:4:12.04:152,12,0 0/1:3,10:13:70.44:275,0,70 0/1:5,3:8:83.21:83,0,137 1/1:0,10:10:27.07:303,27,0 1/1:0,41:41:99:1255,105,0 1/1:0,13:13:39.11:459,39,0 1/1:0,13:13:39.11:449,39,0 1/1:0,6:6:18.05:210,18,0 1/1:0,10:10:30.08:346,30,0 1/1:0,14:14:33.10:402,33,0 1/1:0,16:16:45.12:511,45,0 1/1:0,12:12:33.09:384,33,0 1/1:0,18:18:51.16:647,51,0 1/1:0,6:6:15.05:194,15,0 1/1:0,10:10:30.10:396,30,0 1/1:0,4:4:9.03:106,9,0 0/1:4,7:11:44.31:213,0,44 1/1:0,11:11:33.09:373,33,0 0/1:5,5:10:99:153,0,152 0/1:4,4:8:99:115,0,124 0/1:9,7:16:99:136,0,283 1/1:0,10:10:27.07:305,27,0 1/1:0,10:10:24.07:302,24,0 1/1:0,7:7:21.06:252,21,0 1/1:0,5:5:12.04:144,12,0 1/1:0,10:10:27.05:298,27,0 1/1:0,10:10:30.09:350,30,0 1/1:0,5:5:12.04:142,12,0 1/1:0,11:11:27.08:318,27,0 1/1:0,7:7:21.06:239,21,0 1/1:0,6:6:18.05:198,18,0 1/1:0,8:8:24.04:248,24,0 19 3983184 . A G 7822.30 . AC=18;AF=0.214;AN=84;BaseQRankSum=3.786;DP=1398;Dels=0.00;FS=3.256;HRun=0;HaplotypeScore=0.9165;InbreedingCoeff=-0.1313;MQ=59.17;MQ0=0;MQRankSum=-1.350;QD=14.12;ReadPosRankSum=-3.307 GT:AD:DP:GQ:PL 0/0:22,0:22:66.20:0,66,776 0/1:8,9:17:99:228,0,238 0/1:11,8:19:99:183,0,326 0/1:32,26:58:99:778,0,926 0/0:61,0:61:99:0,184,2122 0/0:36,0:36:99:0,108,1313 0/0:48,0:48:99:0,138,1623 0/1:13,25:38:99:790,0,326 0/1:11,9:21:99:234,0,298 0/0:24,0:24:66.19:0,66,771 0/1:8,8:16:99:219,0,230 0/1:11,9:20:99:242,0,328 0/0:18,0:18:54.15:0,54,629 0/1:16,10:26:99:201,0,473 0/0:93,0:93:99:0,262,3062 0/0:33,0:33:96.26:0,96,1110 0/1:16,9:25:99:203,0,439 0/1:13,13:26:99:345,0,346 0/0:40,0:40:99:0,108,1268 0/1:27,28:55:99:682,0,739 0/0:46,0:46:99:0,123,1471 0/0:30,0:30:90.27:0,90,1055 0/1:38,40:78:99:1147,0,1067 1/1:0,30:31:72.23:926,72,0 0/1:20,18:38:99:569,0,595 0/1:16,20:36:99:599,0,465 0/0:25,0:25:75.23:0,75,895 0/1:15,9:24:99:202,0,414 0/0:19,0:19:51.16:0,51,631 0/0:24,0:24:66.20:0,66,785 0/0:31,0:31:90.27:0,90,1066 0/0:47,0:47:99:0,126,1488 0/1:16,10:26:99:274,0,390 0/0:19,0:19:57.17:0,57,677 0/0:26,0:26:75.22:0,75,890 0/0:21,0:21:60.18:0,60,710 0/0:51,0:51:99:0,150,1797 0/0:22,0:22:63.19:0,63,748 0/0:28,0:28:78.21:0,78,919 0/0:29,0:29:84.24:0,84,989 0/0:22,0:22:60.18:0,60,725 0/0:29,0:29:81.24:0,81,963 19 4101062 . G T 5213.39 . AC=29;AF=0.345;AN=84;BaseQRankSum=10.201;DP=545;Dels=0.00;FS=9.839;HRun=0;HaplotypeScore=0.2773;InbreedingCoeff=0.1380;MQ=37.71;MQ0=50;MQRankSum=5.236;QD=16.55;ReadPosRankSum=1.735 GT:AD:DP:GQ:PL 0/0:13,0:13:30.08:0,30,342 0/0:9,0:9:21.06:0,21,233 0/1:4,1:5:19.31:19,0,116 1/1:1,17:18:14.71:518,15,0 1/1:0,11:11:33.09:406,33,0 0/0:4,0:4:12.03:0,12,127 0/0:7,0:7:21.05:0,21,225 0/0:9,0:9:21.06:0,21,243 0/0:16,0:16:39.11:0,39,459 0/0:9,0:9:18.05:0,18,221 0/0:14,0:14:36.10:0,36,402 0/0:10,0:10:27.08:0,27,312 0/1:6,3:9:82.54:83,0,150 0/0:13,0:13:39.09:0,39,416 0/1:19,24:43:99:584,0,396 0/0:18,0:18:45.12:0,45,502 1/1:1,11:12:27.06:303,27,0 0/1:4,2:6:55.39:55,0,73 0/0:15,0:15:39.08:0,39,405 0/1:9,7:16:99:174,0,238 0/1:7,11:18:99:250,0,121 0/1:10,5:15:99:162,0,134 0/1:11,14:25:99:418,0,283 0/1:0,1:1:1.76:39,3,0 1/1:0,11:11:27.09:350,27,0 0/0:11,0:11:30.09:0,30,346 1/1:0,5:5:15.05:185,15,0 0/1:9,7:16:99:214,0,213 0/1:9,6:15:99:112,0,248 0/0:4,0:4:12.03:0,12,126 0/0:13,0:13:30.06:0,30,323 0/0:24,0:24:60.11:0,60,659 0/1:10,7:17:99:206,0,295 0/1:4,4:8:74.53:120,0,75 0/1:5,6:11:99:157,0,118 0/1:6,8:14:99:198,0,131 0/1:8,5:13:99:149,0,188 1/1:0,8:8:21.05:240,21,0 0/0:12,0:12:30.07:0,30,330 0/0:18,0:18:42.11:0,42,489 0/0:11,0:11:30.07:0,30,322 0/1:8,10:18:99:270,0,160 19 4102449 . G A 2816.20 . AC=22;AF=0.262;AN=84;BaseQRankSum=0.343;DP=398;Dels=0.00;FS=3.167;HRun=0;HaplotypeScore=0.2684;InbreedingCoeff=-0.0983;MQ=58.14;MQ0=0;MQRankSum=-0.296;QD=13.60;ReadPosRankSum=0.512 GT:AD:DP:GQ:PL 1/1:0,6:6:18.06:218,18,0 0/1:1,1:2:30.11:30,0,32 0/0:4,0:4:12.04:0,12,151 0/1:13,10:23:99:295,0,347 0/0:11,0:11:33.11:0,33,434 0/1:1,4:5:22.75:130,0,23 0/0:6,0:6:18.06:0,18,228 0/1:6,9:15:99:250,0,138 0/0:11,0:11:30.09:0,30,354 0/0:9,0:9:27.07:0,27,301 0/0:5,0:5:12.02:0,12,130 0/1:4,6:10:88.09:189,0,88 1/1:0,2:2:6.02:73,6,0 0/0:13,0:13:39.10:0,39,441 0/1:16,13:29:99:308,0,399 0/0:2,0:2:6.02:0,6,74 0/0:3,0:3:9.02:0,9,101 0/0:7,0:7:21.05:0,21,230 0/0:19,0:19:48.12:0,48,528 0/0:11,0:11:27.08:0,27,325 0/0:10,0:10:27.08:0,27,315 0/1:7,4:11:99:99,0,217 0/1:6,3:9:55.04:55,0,214 0/0:14,0:14:36.08:0,36,431 0/0:8,0:8:21.07:0,21,264 0/0:6,0:6:18.05:0,18,225 0/0:8,0:8:21.05:0,21,243 0/0:4,0:4:9.02:0,9,102 0/1:2,2:4:58.47:58,0,62 0/1:5,4:9:81.05:81,0,152 0/1:3,3:6:73.28:83,0,73 0/0:21,0:21:57.14:0,57,646 0/0:5,0:5:15.05:0,15,180 0/1:1,12:13:2.72:353,1,0 0/1:10,4:14:73.54:74,0,262 0/1:5,2:7:55.06:55,0,129 0/1:7,8:15:99:215,0,177 0/0:6,0:6:18.06:0,18,218 0/1:5,4:9:99:119,0,120 0/1:5,4:9:99:119,0,157 0/1:3,6:9:50.63:193,0,51 0/0:8,0:8:18.04:0,18,201 19 4117528 . G A 7627.74 . AC=6;AF=0.071;AN=84;BaseQRankSum=15.827;DP=3430;Dels=0.00;FS=1.489;HRun=1;HaplotypeScore=1.7408;InbreedingCoeff=-0.0769;MQ=56.15;MQ0=43;MQRankSum=2.650;QD=13.72;ReadPosRankSum=1.732 GT:AD:DP:GQ:PL 0/0:75,0:75:99:0,219,2361 0/0:70,0:70:99:0,198,2160 0/0:52,0:52:99:0,144,1577 0/0:160,0:160:99:0,466,5511 0/0:133,0:133:99:0,388,4626 0/0:127,0:127:99:0,355,4233 0/0:64,0:64:99:0,187,2208 0/1:55,51:106:99:1546,0,1500 0/0:70,0:70:99:0,202,2214 0/0:60,0:60:99:0,171,1857 0/0:60,0:60:99:0,171,1886 0/0:39,0:39:99:0,111,1224 0/0:46,0:47:99:0,123,1356 0/0:53,0:53:99:0,153,1656 0/0:182,0:182:99:0,514,5614 0/0:54,0:54:99:0,153,1698 0/1:25,31:56:99:910,0,655 0/0:58,0:58:99:0,156,1702 0/0:112,0:112:99:0,310,3339 0/1:71,64:136:99:1878,0,1807 0/0:121,0:122:99:0,331,3596 0/0:65,0:65:99:0,189,2042 0/0:173,0:173:99:0,490,5817 0/1:57,44:101:99:1323,0,1547 0/1:65,51:116:99:1585,0,1919 0/0:76,0:76:99:0,226,2664 0/0:48,0:48:99:0,144,1556 0/0:64,0:65:99:0,180,1983 0/0:49,0:49:99:0,141,1540 0/0:68,1:69:99:0,192,2092 0/1:27,14:41:99:386,0,702 0/0:112,0:112:99:0,307,3416 0/0:81,0:82:99:0,228,2417 0/0:68,0:68:99:0,201,2139 0/0:66,0:66:99:0,192,2040 0/0:73,0:73:99:0,208,2278 0/0:108,0:108:99:0,289,3132 0/0:71,0:71:99:0,204,2193 0/0:39,0:39:99:0,114,1234 0/0:57,0:57:99:0,168,1809 0/0:47,2:49:71.26:0,71,1428 0/0:66,0:66:99:0,174,1884 19 4154910 . C T 18552.02 . AC=21;AF=0.250;AN=84;BaseQRankSum=-20.852;DP=3301;Dels=0.00;FS=21.546;HRun=1;HaplotypeScore=1.7400;InbreedingCoeff=0.1746;MQ=59.25;MQ0=0;MQRankSum=-0.398;QD=17.26;ReadPosRankSum=-1.957 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,150,1926 0/1:27,25:52:99:727,0,807 1/1:0,43:43:99:1418,114,0 0/0:210,0:210:99:0,569,7590 0/0:187,0:187:99:0,506,6786 0/0:125,0:125:99:0,346,4568 0/0:98,0:98:99:0,262,3521 0/0:111,0:111:99:0,301,4062 0/1:34,24:58:99:666,0,1057 0/1:20,29:49:99:808,0,551 0/0:45,0:45:99:0,132,1649 1/1:2,45:47:62.85:1580,63,0 1/1:0,44:44:99:1455,117,0 1/1:0,57:57:99:2013,163,0 0/1:102,71:173:99:1977,0,3089 0/0:54,0:54:99:0,150,1942 0/1:29,30:59:99:909,0,823 0/0:34,0:34:90.28:0,90,1160 0/1:45,52:97:99:1483,0,1256 0/1:62,48:110:99:1288,0,1752 0/0:106,0:107:99:0,283,3585 0/1:32,30:62:99:901,0,891 0/0:212,1:213:99:0,551,7851 0/0:89,0:90:99:0,244,3223 0/0:107,0:107:99:0,298,3963 0/0:93,0:93:99:0,253,3360 0/1:19,16:35:99:437,0,550 0/0:52,0:52:99:0,147,1839 0/1:22,20:42:99:585,0,648 0/0:44,0:44:99:0,123,1552 0/0:44,0:44:99:0,126,1605 0/0:117,0:117:99:0,313,4019 0/0:68,0:68:99:0,184,2348 0/0:43,0:43:99:0,114,1442 0/0:50,1:51:99:0,108,1688 0/0:73,0:73:99:0,196,2523 0/0:89,0:89:99:0,253,3180 0/0:54,0:54:99:0,153,1945 0/0:59,0:59:99:0,166,2070 0/1:23,25:48:99:758,0,711 0/1:22,27:49:99:823,0,583 0/1:24,26:50:99:723,0,740 19 4175092 . T G 164.20 . AC=12;AF=0.143;AN=84;BaseQRankSum=-2.620;DP=271;Dels=0.01;FS=228.869;HRun=2;HaplotypeScore=0.2995;InbreedingCoeff=-0.0887;MQ=58.73;MQ0=0;MQRankSum=0.723;QD=1.91;ReadPosRankSum=-7.762 GT:AD:DP:GQ:PL 0/1:4,3:7:22.05:22,0,101 0/0:4,0:4:12.04:0,12,149 0/0:4,1:5:9.03:0,9,113 0/1:4,4:8:59.84:60,0,120 0/0:8,1:9:24.07:0,24,293 0/1:3,3:6:22.31:22,0,106 0/0:2,3:5:6.02:0,6,79 0/1:4,3:7:21.10:21,0,119 0/0:6,1:7:11.86:0,12,171 0/0:3,1:4:9.02:0,9,104 0/0:6,2:8:18.06:0,18,227 0/1:2,1:3:23.47:23,0,64 1/1:0,2:2:6.01:64,6,0 0/1:2,1:3:27.96:28,0,54 0/1:19,5:24:13.13:13,0,609 0/0:4,2:6:12.03:0,12,136 0/0:5,0:5:15.04:0,15,178 0/0:6,1:7:18.05:0,18,214 0/0:3,0:3:9.03:0,9,112 0/0:7,2:9:18.52:0,19,216 0/0:8,1:9:17.87:0,18,246 0/0:6,4:10:13.40:0,13,152 0/0:10,3:13:1.05:6,0,299 0/1:6,4:10:16.12:16,0,187 0/0:2,2:4:6.01:0,6,66 0/1:3,3:6:20.46:20,0,102 0/0:3,0:3:9.03:0,9,105 0/0:6,1:7:18.05:0,18,216 0/0:2,0:2:6.02:0,6,75 0/0:7,1:8:21.07:0,21,258 0/0:4,2:6:11.07:0,11,116 0/0:2,1:3:6.02:0,6,76 0/1:6,4:10:7.60:8,0,182 0/0:4,2:6:9.91:0,10,100 0/0:5,0:5:12.04:0,12,151 0/0:4,1:5:4.24:0,4,108 0/0:1,1:2:3.01:0,3,38 0/0:3,1:4:6.02:0,6,68 0/0:7,0:7:21.06:0,21,242 0/0:4,0:4:12.04:0,12,143 0/0:6,0:6:18.05:0,18,209 0/0:6,0:6:18.06:0,18,223 19 4175127 . C T 29.59 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.280;DP=388;Dels=0.00;FS=2.477;HRun=0;HaplotypeScore=0.1469;InbreedingCoeff=-0.0253;MQ=57.33;MQ0=0;MQRankSum=-0.018;QD=2.96;ReadPosRankSum=0.746 GT:AD:DP:GQ:PL 0/0:7,0:7:21.06:0,21,236 0/0:7,0:7:15.03:0,15,170 0/0:7,0:7:21.06:0,21,249 0/0:23,0:23:60.17:0,60,756 0/0:14,0:14:39.12:0,39,496 0/0:15,0:15:39.12:0,39,494 0/0:7,0:7:21.06:0,21,244 0/0:5,0:5:15.04:0,15,173 0/1:7,3:10:75.66:76,0,180 0/0:4,0:4:12.04:0,12,145 0/0:8,0:8:24.06:0,24,256 0/0:4,0:4:12.03:0,12,142 0/0:5,0:5:15.03:0,15,164 0/0:4,0:4:12.03:0,12,132 0/0:21,0:21:60.15:0,60,655 0/0:8,0:8:21.06:0,21,246 0/0:8,0:8:21.06:0,21,247 0/0:8,0:8:21.06:0,21,251 0/0:11,0:11:33.09:0,33,371 0/0:13,0:13:39.11:0,39,442 0/0:11,0:11:27.07:0,27,303 0/0:8,0:8:21.06:0,21,235 0/0:26,0:26:69.20:0,69,855 0/0:9,0:9:24.07:0,24,296 0/0:12,0:12:36.11:0,36,459 0/0:11,0:11:30.08:0,30,368 0/0:3,0:3:3.01:0,3,34 0/0:13,0:13:39.11:0,39,461 0/0:6,0:6:18.05:0,18,217 0/0:5,0:5:15.04:0,15,174 0/0:9,0:9:27.07:0,27,306 0/0:2,0:2:6.01:0,6,60 0/0:11,0:11:30.08:0,30,354 0/0:9,0:9:24.04:0,24,260 0/0:11,0:11:33.09:0,33,370 0/0:3,0:3:9.02:0,9,97 0/0:7,0:7:21.05:0,21,236 0/0:5,0:5:15.04:0,15,180 0/0:11,0:11:33.07:0,33,353 0/0:6,0:6:18.04:0,18,204 0/0:8,0:8:24.06:0,24,264 0/0:13,0:13:39.11:0,39,448 19 4180836 . C T 29314.79 . AC=78;AF=0.929;AN=84;BaseQRankSum=-5.267;DP=904;Dels=0.00;FS=3.399;HRun=1;HaplotypeScore=0.5839;InbreedingCoeff=-0.0771;MQ=57.57;MQ0=0;MQRankSum=-0.539;QD=32.43;ReadPosRankSum=0.973 GT:AD:DP:GQ:PL 1/1:0,18:18:54.16:633,54,0 1/1:0,11:11:33.09:377,33,0 1/1:0,9:9:27.08:317,27,0 1/1:0,45:45:99:1544,132,0 1/1:0,44:44:99:1583,132,0 1/1:0,28:28:84.24:1009,84,0 1/1:0,26:26:72.21:875,72,0 1/1:0,27:27:78.21:929,78,0 0/1:9,10:19:99:268,0,257 1/1:0,18:18:54.16:640,54,0 0/1:2,8:10:49.92:263,0,50 1/1:0,10:10:27.08:312,27,0 1/1:0,11:11:33.10:383,33,0 1/1:0,16:16:48.14:562,48,0 1/1:0,48:48:99:1639,141,0 1/1:0,13:13:36.11:438,36,0 1/1:0,20:20:60.17:700,60,0 1/1:0,11:11:33.10:392,33,0 1/1:0,26:26:72.21:860,72,0 1/1:0,39:39:99:1375,114,0 1/1:0,20:20:60.15:703,60,0 1/1:0,19:19:57.14:660,57,0 1/1:0,62:62:99:2184,187,0 1/1:0,23:23:69.21:827,69,0 0/1:15,17:32:99:487,0,498 1/1:0,26:26:78.23:913,78,0 1/1:0,8:8:24.06:276,24,0 1/1:0,14:14:42.12:492,42,0 1/1:0,9:9:27.08:317,27,0 1/1:0,11:11:30.09:354,30,0 1/1:0,12:12:36.09:420,36,0 1/1:0,34:34:96.29:1140,96,0 1/1:0,26:26:75.22:875,75,0 1/1:0,13:13:36.10:426,36,0 1/1:0,19:19:51.15:593,51,0 1/1:0,19:19:54.15:618,54,0 1/1:0,24:24:69.19:818,69,0 0/1:5,9:14:99:271,0,123 1/1:1,20:21:60.18:696,60,0 0/1:5,7:12:99:207,0,138 1/1:0,18:18:54.16:634,54,0 0/1:8,11:19:99:304,0,236 19 4180901 . G A 312.42 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.978;DP=1469;Dels=0.00;FS=2.334;HRun=2;HaplotypeScore=0.8077;InbreedingCoeff=-0.0244;MQ=58.05;MQ0=0;MQRankSum=2.311;QD=9.19;ReadPosRankSum=-0.174 GT:AD:DP:GQ:PL 0/0:28,0:28:69.21:0,69,854 0/0:21,0:21:54.16:0,54,660 0/0:19,0:19:54.16:0,54,648 0/0:76,0:76:99:0,199,2521 0/0:72,0:72:99:0,193,2511 0/0:66,0:66:99:0,163,2123 0/0:37,0:37:90.27:0,90,1166 0/0:62,0:62:99:0,166,2112 0/0:30,0:30:75.20:0,75,908 0/0:20,0:20:57.14:0,57,657 0/0:19,0:19:48.11:0,48,581 0/0:21,0:21:54.15:0,54,644 0/0:19,0:19:48.15:0,48,605 0/0:21,0:21:54.15:0,54,633 0/0:93,0:94:99:0,244,2955 0/0:20,0:20:54.15:0,54,635 0/0:27,0:27:75.21:0,75,903 0/0:12,0:12:33.10:0,33,411 0/0:34,0:34:90.27:0,90,1102 0/0:44,0:45:99:0,117,1457 0/0:34,0:34:93.29:0,93,1150 0/0:27,0:27:72.19:0,72,852 0/0:116,0:116:99:0,298,3839 0/0:51,0:51:99:0,126,1656 0/0:58,0:58:99:0,141,1854 0/0:44,0:44:99:0,105,1320 0/0:17,0:17:48.14:0,48,567 0/0:22,0:22:57.15:0,57,672 0/0:17,0:17:42.13:0,42,520 0/1:9,9:18:99:246,0,253 0/1:11,5:16:99:128,0,360 0/0:52,0:52:99:0,129,1604 0/0:38,0:38:99:0,108,1304 0/0:18,0:18:48.13:0,48,569 0/0:21,0:21:54.16:0,54,669 0/0:20,0:20:60.18:0,60,721 0/0:34,0:34:96.27:0,96,1161 0/0:28,0:28:81.23:0,81,950 0/0:22,0:22:63.18:0,63,748 0/0:23,0:23:60.16:0,60,705 0/0:23,0:23:66.19:0,66,775 0/0:27,0:27:81.24:0,81,964 19 4199944 . G A 83.18 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.065;DP=258;Dels=0.00;FS=7.868;HRun=0;HaplotypeScore=0.3338;InbreedingCoeff=-0.0631;MQ=58.24;MQ0=0;MQRankSum=-1.145;QD=8.32;ReadPosRankSum=0.768 GT:AD:DP:GQ:PL 0/0:4,0:4:12.02:0,12,135 0/0:2,0:2:6.02:0,6,64 0/0:5,0:5:12.04:0,12,157 0/0:6,0:6:15.05:0,15,193 0/0:5,0:5:15.05:0,15,202 0/0:2,0:2:6.02:0,6,77 0/0:3,0:3:9.03:0,9,109 0/0:2,0:2:3.01:0,3,37 0/0:4,1:5:12.04:0,12,146 0/0:4,0:4:9.03:0,9,115 0/0:6,0:6:18.03:0,18,196 0/1:2,1:3:26.23:26,0,63 0/0:7,0:7:21.06:0,21,240 0/1:3,4:7:75.43:118,0,75 0/0:22,0:22:63.19:0,63,763 0/0:7,0:7:18.05:0,18,203 0/0:4,0:4:9.03:0,9,113 0/0:7,0:7:21.05:0,21,227 0/0:17,0:17:42.12:0,42,495 0/0:16,0:16:39.12:0,39,487 0/0:8,0:8:21.06:0,21,253 0/0:4,0:4:12.03:0,12,136 0/0:3,0:3:9.02:0,9,101 0/0:1,0:1:3.01:0,3,35 0/0:2,0:2:3.01:0,3,42 0/0:4,0:4:12.03:0,12,141 0/0:4,0:4:9.01:0,9,92 0/0:6,0:6:15.04:0,15,189 0/0:4,0:4:12.03:0,12,138 0/0:8,0:8:24.06:0,24,268 0/0:1,0:1:3.01:0,3,39 0/0:12,0:12:36.10:0,36,421 0/0:6,0:6:18.05:0,18,212 0/0:8,0:8:21.05:0,21,227 0/0:4,0:4:12.03:0,12,136 0/0:9,0:9:24.06:0,24,277 0/0:10,0:10:30.03:0,30,312 0/0:6,0:6:18.04:0,18,189 0/0:4,0:4:12.02:0,12,125 0/0:6,0:6:18.05:0,18,207 0/0:8,0:8:24.07:0,24,282 0/0:6,0:6:15.04:0,15,178 19 4199952 . C T 5.43 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.695;DP=260;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.2340;InbreedingCoeff=-0.0486;MQ=57.98;MQ0=0;MQRankSum=-1.251;QD=1.09;ReadPosRankSum=0.053 GT:AD:DP:GQ:PL 0/0:2,0:2:6.01:0,6,62 0/0:2,0:2:6.02:0,6,73 0/0:4,0:4:9.02:0,9,108 0/0:4,0:4:9.03:0,9,106 0/0:5,0:5:15.04:0,15,167 0/0:3,0:3:9.03:0,9,106 0/0:4,0:4:12.04:0,12,153 0/0:2,0:2:6.02:0,6,74 0/0:5,0:5:15.04:0,15,168 0/0:3,0:3:6.02:0,6,76 0/0:5,0:5:15.04:0,15,159 0/0:3,0:3:9.02:0,9,97 0/0:8,0:8:24.07:0,24,282 0/0:8,0:8:24.06:0,24,265 0/0:19,0:19:57.15:0,57,638 0/0:7,0:7:18.05:0,18,201 0/0:5,0:5:9.03:0,9,122 0/0:8,0:8:24.07:0,24,280 0/0:20,0:20:54.14:0,54,599 0/0:17,0:17:39.11:0,39,476 0/0:6,0:6:18.05:0,18,198 0/0:5,0:5:15.04:0,15,167 0/0:3,0:3:9.03:0,9,119 0/0:1,0:1:3.01:0,3,36 0/0:5,0:5:15.05:0,15,184 0/0:5,0:5:12.03:0,12,145 0/0:3,0:3:9.02:0,9,92 0/0:5,0:5:12.02:0,12,134 0/0:3,0:3:9.02:0,9,98 0/0:9,0:9:27.08:0,27,317 0/0:1,0:1:3.01:0,3,33 0/0:11,0:11:30.08:0,30,345 0/0:6,0:6:18.04:0,18,197 0/0:7,0:7:21.06:0,21,239 0/0:4,0:4:12.04:0,12,148 0/0:9,0:9:27.08:0,27,309 0/0:11,0:11:33.06:0,33,363 0/1:3,2:5:49.78:50,0,72 0/0:4,0:4:12.03:0,12,136 0/0:8,0:8:21.06:0,21,243 0/0:9,0:9:27.08:0,27,312 0/0:6,0:6:15.05:0,15,192 19 4210356 . G A 5421.24 . AC=44;AF=0.524;AN=84;BaseQRankSum=0.882;DP=332;Dels=0.00;FS=2.008;HRun=0;HaplotypeScore=0.1851;InbreedingCoeff=-0.1227;MQ=58.84;MQ0=0;MQRankSum=-1.949;QD=20.61;ReadPosRankSum=-0.208 GT:AD:DP:GQ:PL 1/1:0,6:6:18.06:229,18,0 0/1:2,3:5:49.01:97,0,49 0/1:3,2:5:58.26:60,0,58 0/1:4,6:10:99:172,0,132 0/0:5,0:5:12.04:0,12,169 0/1:2,3:5:61.09:100,0,61 1/1:0,4:4:12.04:159,12,0 0/1:6,4:10:99:122,0,181 1/1:0,6:6:18.06:224,18,0 1/1:0,6:6:18.06:226,18,0 0/1:4,3:7:70.51:71,0,72 0/1:4,3:7:93.88:94,0,130 1/1:0,3:3:9.03:112,9,0 0/1:2,5:7:47.41:143,0,47 0/1:15,15:30:99:421,0,360 0/1:4,4:8:99:123,0,127 1/1:0,5:5:15.04:176,15,0 0/1:3,4:8:86.86:131,0,87 0/1:12,1:13:4.69:5,0,348 0/0:19,0:19:51.13:0,51,619 1/1:0,10:10:30.09:375,30,0 1/1:0,12:12:30.10:384,30,0 0/1:3,4:7:99:135,0,103 0/0:9,0:9:24.08:0,24,314 1/1:0,5:5:15.05:189,15,0 0/0:4,0:4:12.04:0,12,158 0/0:7,0:7:18.06:0,18,229 0/1:3,4:7:81.34:130,0,81 0/1:0,1:1:1.76:39,3,0 0/0:8,0:8:21.07:0,21,268 0/1:1,3:4:20.46:102,0,20 1/1:0,15:15:42.13:525,42,0 0/1:7,4:11:99:118,0,188 0/0:6,0:6:18.05:0,18,202 0/1:2,5:7:51.87:157,0,52 0/1:3,6:9:85.01:176,0,85 0/1:5,6:11:99:183,0,153 0/1:1,2:3:24.41:67,0,24 0/1:3,2:5:59.19:64,0,59 0/0:11,0:11:33.09:0,33,390 0/1:2,1:3:27.10:27,0,61 0/1:5,3:8:87.43:87,0,152 19 4236996 . G A 28987.91 . AC=34;AF=0.405;AN=84;BaseQRankSum=-2.582;DP=2491;Dels=0.00;FS=13.007;HRun=0;HaplotypeScore=1.5911;InbreedingCoeff=-0.2847;MQ=57.78;MQ0=0;MQRankSum=4.793;QD=16.47;ReadPosRankSum=0.918 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,162,1892 0/1:18,30:48:99:897,0,429 0/1:23,11:34:99:288,0,693 0/0:135,0:135:99:0,388,4855 0/1:48,49:97:99:1455,0,1440 0/0:83,0:83:99:0,235,3019 0/0:64,0:65:99:0,190,2350 0/1:48,40:88:99:1079,0,1490 0/1:17,19:36:99:550,0,471 0/1:23,21:44:99:610,0,604 0/0:37,0:37:99:0,108,1243 0/1:23,18:41:99:504,0,640 0/0:38,1:39:75.10:0,75,1151 1/1:1,39:41:79.56:1329,80,0 0/1:59,51:110:99:1408,0,1614 0/1:28,24:52:99:649,0,736 0/0:58,0:58:99:0,168,1975 0/1:20,28:48:99:789,0,531 1/1:0,76:76:99:2578,220,0 0/1:36,34:70:99:962,0,1058 0/1:43,44:88:99:1207,0,1162 0/1:19,21:41:99:583,0,497 0/1:62,56:118:99:1595,0,1970 0/1:35,31:66:99:890,0,1014 0/1:35,28:63:99:823,0,1108 0/1:29,29:58:99:786,0,901 0/0:37,0:37:99:0,111,1289 0/0:44,0:44:99:0,132,1551 0/1:19,18:37:99:518,0,508 0/1:20,18:38:99:518,0,554 0/1:14,19:33:99:572,0,397 0/0:93,0:93:99:0,271,3094 0/1:39,37:76:99:1053,0,1115 0/1:25,29:54:99:839,0,693 0/1:21,16:37:99:420,0,602 0/0:50,0:50:99:0,144,1670 1/1:0,82:83:99:2817,238,0 0/1:26,24:51:99:689,0,695 1/1:0,49:49:99:1577,135,0 0/1:30,19:49:99:546,0,831 0/1:18,16:34:99:457,0,527 0/0:35,0:35:99:0,105,1192 19 4237051 . T C 23.76 . AC=5;AF=0.060;AN=84;BaseQRankSum=-9.668;DP=1089;Dels=0.00;FS=324.691;HRun=4;HaplotypeScore=0.7991;InbreedingCoeff=-0.0940;MQ=58.14;MQ0=1;MQRankSum=0.320;QD=0.16;ReadPosRankSum=-11.464 GT:AD:DP:GQ:PL 0/0:21,5:26:31.85:0,32,740 0/0:18,4:22:51.16:0,51,621 0/0:10,5:15:2.34:1,0,301 0/0:58,23:81:1.72:3,0,1866 0/0:25,6:31:19.19:0,19,840 0/0:27,7:34:49:0,49,974 0/0:28,5:33:51.14:0,51,1029 0/0:29,15:44:53.96:0,54,996 0/0:18,5:23:24.54:0,25,591 0/0:8,5:13:24.07:0,24,290 0/0:12,1:13:33.10:0,33,394 0/0:17,6:23:48.14:0,48,569 0/0:10,5:15:30.09:0,30,370 0/1:14,6:21:12.08:12,0,455 0/0:44,14:58:99:0,128,1498 0/0:19,7:26:1.03:0,1,616 0/0:18,3:21:22.60:0,23,582 0/0:8,1:9:24.07:0,24,294 0/0:29,4:33:78.21:0,78,927 0/1:31,12:43:22:22,0,907 0/0:27,4:31:44.79:0,45,863 0/0:20,10:30:56.35:0,56,643 0/0:29,10:39:31.98:0,32,974 0/0:12,1:13:33.10:0,33,409 0/0:23,9:32:50.53:0,51,832 0/1:16,10:26:26.01:26,0,470 0/1:16,6:22:11.75:12,0,523 0/0:13,0:13:36.08:0,36,414 0/0:14,1:15:39.12:0,39,488 0/0:22,1:23:63.19:0,63,769 0/0:9,3:12:24.08:0,24,302 0/0:28,16:44:46.06:0,46,882 0/0:21,12:33:2.29:0,2,636 0/0:15,6:21:42.13:0,42,519 0/0:19,1:20:54.15:0,54,638 0/0:19,3:22:51.16:0,51,632 0/1:28,8:36:41.53:42,0,825 0/0:11,3:14:29.68:0,30,342 0/0:13,1:14:39.12:0,39,481 0/0:11,4:15:7.46:0,7,379 0/0:13,1:15:36.11:0,36,443 0/0:14,1:15:9.88:0,10,475 19 4237067 . A G 19972.66 . AC=34;AF=0.405;AN=84;BaseQRankSum=1.662;DP=1995;Dels=0.00;FS=14.488;HRun=0;HaplotypeScore=3.1289;InbreedingCoeff=-0.2847;MQ=56.38;MQ0=1;MQRankSum=-0.085;QD=14.31;ReadPosRankSum=2.432 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,108,1288 0/1:19,18:37:99:453,0,473 0/1:11,17:28:99:448,0,294 0/0:115,1:116:99:0,307,3748 0/1:31,30:61:99:767,0,931 0/0:54,0:54:99:0,153,1895 0/0:52,0:52:99:0,129,1632 0/1:38,28:66:99:774,0,1066 0/1:24,18:42:99:488,0,628 0/1:16,11:27:99:266,0,481 0/0:34,0:34:99:0,99,1194 0/1:22,15:37:99:382,0,588 0/0:31,0:31:81.24:0,81,961 1/1:0,37:37:96.23:1148,96,0 0/1:61,54:115:99:1294,0,1616 0/1:21,21:42:99:519,0,566 0/0:37,0:37:96.29:0,96,1158 0/1:14,5:19:99:117,0,416 1/1:0,62:62:99:1894,162,0 0/1:39,31:70:99:766,0,1099 0/1:29,28:57:99:719,0,701 0/1:30,22:53:99:576,0,786 0/1:45,27:74:99:735,0,1275 0/1:24,12:36:99:352,0,633 0/1:34,21:55:99:528,0,1054 0/1:23,25:48:99:739,0,621 0/0:36,0:36:99:0,99,1179 0/0:25,0:25:75.22:0,75,893 0/1:18,12:30:99:310,0,496 0/1:20,24:45:99:598,0,512 0/1:14,12:26:99:298,0,348 0/0:95,0:95:99:0,235,2913 0/1:26,35:61:99:954,0,696 0/1:22,21:43:99:569,0,638 0/1:28,16:45:99:359,0,848 0/0:44,0:44:99:0,114,1375 1/1:0,58:58:99:1850,156,0 0/1:17,13:31:99:303,0,485 1/1:0,31:31:81.20:951,81,0 0/1:14,13:27:99:315,0,425 0/1:14,18:32:99:502,0,371 0/0:34,0:34:96.26:0,96,1141 19 4280076 . C A 96.23 . AC=9;AF=0.107;AN=84;BaseQRankSum=-1.381;DP=448;Dels=0.00;FS=35.462;HRun=1;HaplotypeScore=0.4308;InbreedingCoeff=-0.1635;MQ=57.55;MQ0=0;MQRankSum=-0.034;QD=1.13;ReadPosRankSum=-1.408 GT:AD:DP:GQ:PL 0/0:8,1:9:12.02:0,12,116 0/0:11,1:12:3.37:0,3,257 0/0:6,0:6:18.04:0,18,191 0/0:19,2:21:39.08:0,39,433 0/0:8,1:9:12.01:0,12,115 0/0:10,1:11:18.04:0,18,215 0/0:12,1:13:33.07:0,33,367 0/0:14,0:14:27.06:0,27,306 0/0:4,1:5:9.02:0,9,99 0/0:5,3:8:9.03:0,9,103 0/0:7,0:7:18.03:0,18,191 0/0:5,0:5:12.03:0,12,135 0/0:7,3:10:15.04:0,15,163 0/0:5,0:5:6.02:0,6,65 0/0:28,4:32:33.66:0,34,668 0/0:10,0:10:24.03:0,24,244 0/0:9,0:9:18.02:0,18,185 0/1:7,2:9:17.46:17,0,117 0/0:11,0:11:24.06:0,24,270 0/0:19,1:20:48.11:0,48,528 0/1:5,1:6:25.77:26,0,89 0/0:11,0:11:27.02:0,27,268 0/0:23,3:26:26.67:0,27,584 0/0:8,1:9:1.28:5,0,140 0/1:10,3:13:39.54:40,0,229 0/0:6,0:6:15.03:0,15,159 0/1:11,4:15:27.76:28,0,310 0/1:5,1:6:16.52:17,0,110 0/0:10,1:12:2.27:2,0,206 0/0:4,0:4:9.02:0,9,97 0/0:5,1:6:12.01:0,12,119 0/0:19,0:19:48.12:0,48,527 0/0:14,2:16:12.37:0,12,322 0/1:4,1:5:20.60:21,0,55 0/1:7,2:9:38.26:38,0,103 0/0:10,0:10:18.05:0,18,204 0/1:11,2:13:7.51:8,0,191 0/1:8,1:9:21.40:21,0,89 0/0:8,1:9:21.06:0,21,233 0/0:6,1:7:15.02:0,15,153 0/0:4,0:4:3.01:0,3,33 0/0:7,0:7:18.04:0,18,192 19 4280186 . C T 10691.64 . AC=25;AF=0.298;AN=84;BaseQRankSum=-1.605;DP=1299;Dels=0.00;FS=5.316;HRun=2;HaplotypeScore=2.1002;InbreedingCoeff=-0.4237;MQ=59.01;MQ0=0;MQRankSum=0.539;QD=13.78;ReadPosRankSum=-2.235 GT:AD:DP:GQ:PL 0/1:9,11:21:99:304,0,227 0/0:24,0:24:66.17:0,66,785 0/0:17,0:17:48.14:0,48,566 0/0:69,0:69:99:0,178,2255 0/1:32,29:61:99:793,0,883 0/0:46,0:46:99:0,114,1481 0/0:35,0:35:87.24:0,87,1131 0/0:47,0:47:99:0,126,1584 0/1:9,14:23:99:384,0,249 0/1:7,12:20:99:323,0,182 0/0:17,0:17:51.15:0,51,612 0/0:23,0:23:66.16:0,66,773 0/0:18,0:18:39.08:0,39,463 0/1:11,17:28:99:454,0,274 0/1:32,38:70:99:996,0,792 0/1:12,5:17:99:104,0,346 0/0:24,0:24:69.19:0,69,805 0/1:13,9:22:99:259,0,334 0/1:16,11:27:99:298,0,437 0/0:38,0:38:96.28:0,96,1161 0/1:26,15:41:99:407,0,665 0/1:14,10:24:99:247,0,356 0/1:32,48:80:99:1254,0,876 0/1:16,16:32:99:439,0,465 0/1:15,28:43:99:792,0,368 0/1:17,17:34:99:413,0,445 0/0:36,0:36:81.20:0,81,985 0/1:10,14:24:99:380,0,291 0/1:10,17:27:99:488,0,201 0/1:14,8:22:99:218,0,392 0/1:10,17:27:99:398,0,261 0/0:39,0:39:99:0,105,1242 0/0:22,0:22:57.13:0,57,665 0/1:9,8:17:99:205,0,245 0/1:8,16:24:99:400,0,169 0/0:32,0:32:93.24:0,93,1077 0/1:14,11:25:99:292,0,402 0/0:16,0:16:42.12:0,42,503 0/1:14,8:22:99:239,0,318 0/1:17,14:31:99:353,0,394 0/1:5,9:14:99:253,0,126 0/0:20,0:20:57.11:0,57,634 19 4280207 . G C 2281.61 . AC=8;AF=0.095;AN=84;BaseQRankSum=-3.029;DP=1180;Dels=0.00;FS=1.311;HRun=1;HaplotypeScore=0.9961;InbreedingCoeff=-0.1053;MQ=58.62;MQ0=0;MQRankSum=1.541;QD=11.18;ReadPosRankSum=-1.194 GT:AD:DP:GQ:PL 0/0:18,0:18:48.13:0,48,574 0/0:24,0:24:69.19:0,69,806 0/0:15,0:15:42.13:0,42,505 0/0:75,0:75:99:0,184,2328 0/0:63,0:63:99:0,153,1960 0/0:36,0:36:87.27:0,87,1122 0/0:37,0:37:78.24:0,78,1022 0/0:42,0:42:99:0,111,1401 0/0:19,0:19:54.16:0,54,651 0/0:15,0:15:42.10:0,42,469 0/1:8,10:18:99:237,0,168 0/0:21,0:21:51.13:0,51,602 0/0:13,0:13:36.10:0,36,414 0/0:19,0:19:54.16:0,54,651 0/0:64,0:64:99:0,150,1785 0/0:15,0:15:36.10:0,36,434 0/0:22,0:22:57.16:0,57,672 0/0:17,0:17:42.12:0,42,503 0/0:19,0:20:54.14:0,54,596 0/1:19,21:40:99:470,0,492 0/0:30,0:32:75.22:0,75,923 0/1:8,11:19:99:267,0,216 0/0:83,0:84:99:0,214,2706 0/1:15,16:31:99:394,0,407 0/0:40,0:40:90.29:0,90,1185 0/1:18,17:35:99:400,0,423 0/1:11,15:26:99:416,0,245 0/0:20,0:20:48.14:0,48,571 0/1:14,7:21:99:169,0,380 0/0:14,0:14:39.12:0,39,462 0/0:29,0:29:66.19:0,66,785 0/0:41,0:41:99:0,105,1231 0/0:16,0:16:42.12:0,42,500 0/0:18,0:18:48.13:0,48,545 0/0:13,0:13:36.10:0,36,427 0/0:34,0:34:96.23:0,96,1079 0/0:18,0:18:48.14:0,48,575 0/0:14,0:14:36.10:0,36,435 0/0:22,0:22:54.16:0,54,668 0/0:26,0:26:66.18:0,66,784 0/1:8,6:14:50.30:50,0,224 0/0:20,0:20:54.16:0,54,648 19 4292597 . C T 33940.91 . 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G A 3389.33 . 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C G 50.62 . 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C G 19243.50 . 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A G 1269.53 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.703;DP=3331;Dels=0.00;FS=1.785;HRun=0;HaplotypeScore=1.7447;InbreedingCoeff=-0.0244;MQ=57.13;MQ0=1;MQRankSum=2.221;QD=11.65;ReadPosRankSum=-0.378 GT:AD:DP:GQ:PL 0/0:73,0:73:99:0,199,2423 0/0:66,0:66:99:0,165,2056 0/0:62,0:62:99:0,169,2082 0/0:169,0:169:99:0,424,5373 0/0:149,0:149:99:0,406,5095 0/0:87,0:87:99:0,214,2780 0/0:95,0:95:99:0,247,3184 0/0:92,0:92:99:0,214,2751 0/0:59,0:59:99:0,159,1936 0/0:42,0:42:99:0,117,1405 0/0:47,0:47:99:0,132,1580 0/1:33,31:64:99:907,0,928 0/0:47,0:47:99:0,132,1616 0/1:28,17:45:99:425,0,787 0/0:226,0:226:99:0,554,6884 0/0:73,0:73:99:0,199,2405 0/0:60,0:60:99:0,165,2002 0/0:62,0:63:99:0,184,2192 0/0:104,0:104:99:0,274,3358 0/0:108,0:108:99:0,274,3410 0/0:108,0:108:99:0,256,3209 0/0:57,0:57:99:0,153,1867 0/0:153,0:153:99:0,379,4786 0/0:56,0:56:99:0,141,1819 0/0:91,0:91:99:0,232,2949 0/0:78,0:78:99:0,181,2303 0/0:46,0:46:99:0,129,1555 0/0:59,0:59:99:0,162,1974 0/0:58,0:58:99:0,156,1932 0/0:47,0:47:99:0,126,1543 0/0:71,0:71:99:0,193,2378 0/0:95,0:95:99:0,211,2717 0/0:65,0:65:99:0,168,2038 0/0:68,0:68:99:0,193,2332 0/0:61,0:61:99:0,165,2031 0/0:79,0:81:99:0,211,2574 0/0:94,0:94:99:0,238,2948 0/0:75,0:75:99:0,202,2443 0/0:60,0:60:99:0,178,2141 0/0:59,0:59:99:0,159,1919 0/0:55,1:56:99:0,120,1843 0/0:62,0:62:99:0,175,2101 19 4306303 . G C 59.21 . 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T C 47644.61 . AC=60;AF=0.714;AN=84;BaseQRankSum=28.686;DP=2062;Dels=0.00;FS=6.701;HRun=0;HaplotypeScore=3.2809;InbreedingCoeff=-0.0500;MQ=56.43;MQ0=0;MQRankSum=8.187;QD=24.81;ReadPosRankSum=1.292 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1402,114,0 1/1:0,39:39:99:1346,108,0 1/1:1,42:43:76.08:1326,76,0 1/1:1,98:99:99:3444,240,0 0/1:54,32:86:99:857,0,1438 1/1:1,48:49:99:1653,109,0 0/1:24,25:50:99:741,0,664 1/1:0,53:53:99:1865,141,0 0/1:15,23:38:99:671,0,367 1/1:0,27:27:75.24:957,75,0 0/1:25,15:40:99:393,0,658 0/1:20,9:29:99:220,0,583 1/1:0,26:26:75.22:907,75,0 0/0:46,0:46:99:0,126,1462 1/1:0,105:106:99:3541,280,0 1/1:0,30:30:84.25:1058,84,0 0/1:18,17:35:99:481,0,482 0/1:30,16:46:99:472,0,815 0/0:69,0:69:99:0,168,1954 0/1:51,46:98:99:1231,0,1288 1/1:0,46:46:99:1635,132,0 1/1:0,50:50:99:1738,138,0 0/1:67,55:122:99:1630,0,1867 1/1:0,47:47:99:1612,120,0 1/1:0,60:60:99:2145,163,0 1/1:2,46:48:62.55:1566,63,0 0/0:27,0:27:81.23:0,81,930 0/1:17,10:27:99:265,0,511 0/1:18,19:37:99:556,0,490 0/1:21,20:41:99:534,0,620 0/1:14,26:40:99:784,0,367 1/1:0,76:76:99:2614,205,0 0/1:22,23:45:99:695,0,530 0/1:18,17:35:99:539,0,476 0/1:19,22:41:99:619,0,541 0/1:20,17:37:99:542,0,515 1/1:0,75:75:99:2538,208,0 0/1:9,19:28:99:600,0,226 1/1:0,21:21:51.16:643,51,0 1/1:0,31:31:93.29:1141,93,0 1/1:0,31:31:87.24:1068,87,0 1/1:0,47:47:99:1612,129,0 19 4311942 . C T 740.99 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.852;DP=1567;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8047;InbreedingCoeff=-0.0120;MQ=58.84;MQ0=0;MQRankSum=-0.096;QD=11.40;ReadPosRankSum=-0.021 GT:AD:DP:GQ:PL 0/0:31,0:31:90.22:0,90,980 0/0:29,0:29:84.22:0,84,937 0/0:40,0:40:99:0,108,1205 0/0:70,1:71:99:0,171,2335 0/1:38,27:65:99:787,0,1139 0/0:40,0:40:99:0,120,1449 0/0:50,0:50:99:0,147,1785 0/0:49,0:49:99:0,138,1651 0/0:28,0:28:81.22:0,81,911 0/0:26,0:26:72.19:0,72,804 0/0:30,0:30:84.20:0,84,924 0/0:39,0:39:99:0,114,1248 0/0:20,0:20:54.15:0,54,615 0/0:29,0:30:84.23:0,84,949 0/0:95,0:95:99:0,250,2826 0/0:27,0:27:81.22:0,81,896 0/0:21,0:21:60.14:0,60,652 0/0:24,0:24:69.18:0,69,776 0/0:45,0:45:99:0,126,1410 0/0:57,0:57:99:0,159,1767 0/0:36,0:36:99:0,102,1165 0/0:35,0:35:99:0,102,1123 0/0:63,0:63:99:0,178,2188 0/0:38,0:38:99:0,105,1268 0/0:44,0:44:99:0,132,1621 0/0:38,0:38:99:0,111,1328 0/0:32,0:32:84.22:0,84,969 0/0:26,0:26:78.17:0,78,813 0/0:31,0:31:90.24:0,90,1008 0/0:22,0:22:63.17:0,63,702 0/0:31,1:32:87.21:0,87,971 0/0:30,0:30:90.24:0,90,1012 0/0:33,0:33:93.25:0,93,1033 0/0:35,0:35:99:0,102,1136 0/0:27,0:27:75.21:0,75,851 0/0:39,0:39:99:0,111,1241 0/0:41,0:41:99:0,108,1188 0/0:28,0:28:81.22:0,81,904 0/0:35,0:35:96.21:0,96,1054 0/0:31,0:31:93.24:0,93,1030 0/0:23,0:23:66.16:0,66,732 0/0:31,0:31:93.24:0,93,1023 19 4312042 . C G 672.57 . AC=4;AF=0.048;AN=84;BaseQRankSum=-5.790;DP=746;Dels=0.00;FS=1.699;HRun=0;HaplotypeScore=0.6941;InbreedingCoeff=-0.0514;MQ=58.56;MQ0=0;MQRankSum=1.063;QD=10.04;ReadPosRankSum=-1.344 GT:AD:DP:GQ:PL 0/0:15,0:15:45.14:0,45,548 0/0:27,0:27:69.22:0,69,875 0/0:9,0:10:27.08:0,27,333 0/0:28,0:28:72.23:0,72,967 0/0:27,0:27:66.21:0,66,872 0/0:32,0:32:90.29:0,90,1202 0/0:20,0:20:57.17:0,57,728 0/0:12,0:12:27.09:0,27,372 0/1:10,8:19:99:230,0,334 0/1:7,5:12:91.63:92,0,193 0/0:11,0:11:33.10:0,33,415 0/0:24,0:24:63.20:0,63,802 0/0:8,0:8:24.08:0,24,303 0/0:15,0:15:42.13:0,42,533 0/0:48,0:48:99:0,129,1597 0/0:25,0:25:63.19:0,63,788 0/0:20,0:20:57.18:0,57,718 0/0:5,0:5:15.05:0,15,186 0/0:18,0:18:51.14:0,51,603 0/0:27,0:27:69.22:0,69,900 0/0:27,0:27:75.21:0,75,936 0/0:15,0:15:42.14:0,42,537 0/0:31,0:31:84.27:0,84,1117 0/0:25,0:25:57.19:0,57,775 0/0:7,0:7:21.07:0,21,279 0/0:5,0:5:15.05:0,15,195 0/0:9,0:9:21.07:0,21,274 0/0:13,0:13:36.11:0,36,446 0/0:6,0:6:18.05:0,18,219 0/0:21,0:21:57.18:0,57,731 0/0:14,0:14:36.11:0,36,461 0/0:20,0:20:54.16:0,54,687 0/0:19,0:19:51.15:0,51,630 0/0:9,0:9:27.09:0,27,341 0/0:21,0:21:57.18:0,57,729 0/0:17,0:17:48.15:0,48,603 0/1:12,11:23:99:316,0,359 0/0:20,0:20:51.16:0,51,660 0/1:7,6:13:99:122,0,218 0/0:10,0:10:27.06:0,27,317 0/0:9,0:9:27.09:0,27,343 0/0:9,0:9:27.09:0,27,341 19 4322990 . G A 2230.05 . AC=12;AF=0.143;AN=84;BaseQRankSum=4.327;DP=684;Dels=0.00;FS=4.151;HRun=0;HaplotypeScore=0.4795;InbreedingCoeff=-0.1702;MQ=58.58;MQ0=0;MQRankSum=-1.104;QD=11.21;ReadPosRankSum=1.504 GT:AD:DP:GQ:PL 0/0:13,0:13:36.10:0,36,415 0/0:15,0:15:42.09:0,42,459 0/0:18,0:18:42.12:0,42,500 0/0:25,0:25:69.19:0,69,820 0/0:35,0:35:87.27:0,87,1099 0/0:13,0:13:36.11:0,36,452 0/0:15,0:15:45.13:0,45,535 0/0:14,0:14:39.11:0,39,467 0/0:13,0:13:39.10:0,39,440 0/0:9,0:9:24.06:0,24,255 0/0:6,0:6:15.04:0,15,170 0/0:6,0:6:18.03:0,18,195 0/0:2,0:2:6.02:0,6,66 0/0:16,0:16:42.11:0,42,464 0/1:26,24:50:99:594,0,666 0/0:29,0:29:81.22:0,81,926 0/1:5,6:11:99:155,0,132 0/0:14,0:14:42.10:0,42,468 0/0:19,0:19:48.13:0,48,553 0/0:19,0:19:51.11:0,51,567 0/1:8,9:17:99:273,0,190 0/1:7,11:19:99:337,0,170 0/0:24,0:24:66.18:0,66,800 0/0:16,0:16:45.14:0,45,572 0/1:9,2:11:41.14:41,0,264 0/1:3,7:10:83.85:198,0,84 0/0:15,0:15:42.12:0,42,480 0/0:17,0:17:48.09:0,48,526 0/1:12,5:17:99:122,0,349 0/1:10,2:12:14.68:15,0,286 0/0:15,0:15:42.11:0,42,474 0/0:23,0:23:63.17:0,63,710 0/1:6,8:14:99:189,0,160 0/0:10,0:10:30.07:0,30,327 0/0:13,0:13:36.07:0,36,383 0/0:16,0:16:45.11:0,45,493 0/0:29,0:29:72.18:0,72,844 0/0:11,0:11:33.08:0,33,354 0/0:15,0:15:39.10:0,39,449 0/1:9,5:14:99:129,0,245 0/1:5,9:14:99:233,0,100 0/1:7,3:10:87.96:88,0,134 19 4323053 . C T 605.38 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.504;DP=790;Dels=0.00;FS=2.010;HRun=0;HaplotypeScore=0.9684;InbreedingCoeff=-0.0245;MQ=58.33;MQ0=0;MQRankSum=0.458;QD=13.16;ReadPosRankSum=0.079 GT:AD:DP:GQ:PL 0/0:13,0:13:33.10:0,33,395 0/0:16,0:16:48.15:0,48,583 0/0:12,0:12:30.07:0,30,351 0/0:27,0:27:72.21:0,72,901 0/0:44,0:44:99:0,126,1540 0/0:19,0:19:54.14:0,54,659 0/0:23,0:23:63.18:0,63,765 0/0:16,0:16:45.14:0,45,579 0/0:16,0:16:42.13:0,42,505 0/0:15,0:15:42.13:0,42,511 0/0:16,0:16:45.13:0,45,533 0/0:9,0:9:27.07:0,27,306 0/0:9,0:9:27.07:0,27,313 0/0:14,0:14:39.11:0,39,457 0/1:14,18:34:99:462,0,314 0/1:5,7:12:99:205,0,148 0/0:15,0:15:39.12:0,39,484 0/0:16,0:16:42.11:0,42,504 0/0:22,1:23:60.14:0,60,696 0/0:25,1:26:47.61:0,48,840 0/0:23,0:23:60.18:0,60,713 0/0:19,0:19:51.14:0,51,593 0/0:45,0:45:99:0,126,1582 0/0:17,0:17:45.12:0,45,534 0/0:21,0:21:60.16:0,60,745 0/0:19,0:19:48.13:0,48,608 0/0:17,0:17:45.11:0,45,533 0/0:11,0:11:30.08:0,30,339 0/0:17,0:17:39.07:0,39,459 0/0:13,0:13:39.11:0,39,469 0/0:11,0:11:33.10:0,33,404 0/0:30,0:30:84.22:0,84,980 0/0:13,0:13:39.10:0,39,438 0/0:13,0:13:39.11:0,39,461 0/0:17,0:17:48.13:0,48,560 0/0:21,0:21:63.19:0,63,748 0/0:20,0:20:57.14:0,57,674 0/0:20,0:20:57.13:0,57,655 0/0:15,0:15:39.11:0,39,459 0/0:10,0:10:30.08:0,30,344 0/0:20,0:20:57.16:0,57,666 0/0:23,0:23:66.17:0,66,781 19 4323571 . C T 704.99 . AC=4;AF=0.048;AN=84;BaseQRankSum=-2.855;DP=559;Dels=0.00;FS=1.612;HRun=1;HaplotypeScore=0.7006;InbreedingCoeff=-0.0515;MQ=58.33;MQ0=0;MQRankSum=0.505;QD=14.69;ReadPosRankSum=-0.775 GT:AD:DP:GQ:PL 0/0:9,0:9:27.08:0,27,330 0/0:13,0:13:33.10:0,33,426 0/0:8,0:8:21.06:0,21,251 0/0:32,0:32:87.26:0,87,1106 0/0:17,0:17:51.14:0,51,640 0/0:15,0:15:42.11:0,42,530 0/0:8,0:8:21.06:0,21,268 0/0:14,0:14:36.11:0,36,452 0/1:7,4:11:99:111,0,224 0/1:3,7:10:83.75:208,0,84 0/0:7,0:7:15.05:0,15,193 0/0:18,0:18:51.16:0,51,642 0/0:12,0:12:33.08:0,33,396 0/0:10,0:10:24.05:0,24,269 0/0:30,0:30:81.25:0,81,1008 0/0:13,0:13:39.11:0,39,464 0/0:12,0:12:30.05:0,30,349 0/0:9,0:9:27.09:0,27,346 0/0:13,0:13:36.11:0,36,437 0/0:24,0:24:60.18:0,60,748 0/0:19,0:19:54.14:0,54,617 0/0:11,0:11:33.09:0,33,392 0/0:21,0:21:54.17:0,54,703 0/0:13,0:13:36.09:0,36,449 0/0:18,0:18:51.16:0,51,660 0/0:15,0:15:45.14:0,45,590 0/0:11,0:11:30.06:0,30,337 0/0:9,0:9:24.08:0,24,307 0/0:15,0:15:39.11:0,39,484 0/0:11,0:11:27.08:0,27,329 0/0:9,0:9:24.08:0,24,308 0/0:16,0:16:42.13:0,42,540 0/0:18,0:18:51.16:0,51,631 0/0:13,0:13:36.10:0,36,440 0/0:9,0:9:21.07:0,21,274 0/0:6,0:6:18.03:0,18,207 0/1:9,11:20:99:349,0,262 0/0:10,0:10:30.08:0,30,343 0/1:3,4:7:88.16:123,0,88 0/0:8,0:8:21.06:0,21,261 0/0:9,0:9:27.08:0,27,336 0/0:6,0:6:18.06:0,18,234 19 4333711 . C T 40666.80 . AC=49;AF=0.583;AN=84;BaseQRankSum=-22.066;DP=2251;Dels=0.00;FS=0.833;HRun=1;HaplotypeScore=0.8538;InbreedingCoeff=0.0694;MQ=59.23;MQ0=0;MQRankSum=0.321;QD=21.86;ReadPosRankSum=-1.447 GT:AD:DP:GQ:PL 0/1:25,29:54:99:787,0,773 1/1:0,35:35:99:1208,99,0 1/1:0,37:37:99:1264,105,0 1/1:0,86:86:99:2901,238,0 0/1:40,40:80:99:1195,0,1235 0/1:27,24:51:99:689,0,841 1/1:0,45:45:99:1612,129,0 0/1:31,38:69:99:1194,0,986 0/1:18,24:42:99:716,0,449 0/0:41,0:41:99:0,120,1489 0/1:14,21:35:99:558,0,399 1/1:0,36:36:99:1219,99,0 1/1:0,22:22:60.18:731,60,0 1/1:0,52:52:99:1839,153,0 0/1:58,66:124:99:1744,0,1695 0/0:38,0:38:99:0,111,1367 0/1:23,24:47:99:650,0,709 0/1:22,15:37:99:434,0,717 0/1:44,37:81:99:1023,0,1286 0/0:79,0:79:99:0,223,2816 0/1:49,49:98:99:1395,0,1346 1/1:0,52:52:99:1742,144,0 1/1:0,72:72:99:2493,202,0 0/1:26,32:58:99:929,0,833 0/1:34,25:59:99:731,0,1110 1/1:0,48:48:99:1549,126,0 0/0:25,0:25:72.20:0,72,904 0/1:15,21:36:99:627,0,418 0/0:51,0:51:99:0,135,1702 0/1:20,22:42:99:620,0,581 0/1:17,24:41:99:689,0,542 0/1:48,29:77:99:796,0,1411 1/1:0,72:72:99:2412,199,0 0/1:30,20:50:99:565,0,862 0/1:33,19:52:99:491,0,1067 1/1:1,53:54:99:1793,128,0 0/0:69,0:69:99:0,184,2227 0/0:41,0:41:99:0,114,1399 0/0:47,0:47:99:0,132,1661 1/1:0,28:28:81.24:962,81,0 1/1:0,36:36:99:1243,102,0 1/1:0,52:52:99:1866,153,0 19 4361656 . C T 295.19 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.044;DP=1350;Dels=0.00;FS=4.573;HRun=0;HaplotypeScore=1.0853;InbreedingCoeff=-0.0121;MQ=58.92;MQ0=0;MQRankSum=-1.607;QD=10.93;ReadPosRankSum=-0.980 GT:AD:DP:GQ:PL 0/0:31,0:31:90.26:0,90,1066 0/0:39,0:39:99:0,111,1322 0/0:24,0:24:66.18:0,66,796 0/0:44,0:44:99:0,129,1630 0/0:42,0:42:99:0,120,1583 0/0:37,0:37:99:0,99,1276 0/0:32,0:32:90.29:0,90,1181 0/0:37,0:37:99:0,99,1284 0/0:25,0:25:72.21:0,72,869 0/0:21,0:21:54.16:0,54,643 0/0:35,0:35:96.27:0,96,1174 0/0:31,0:31:90.25:0,90,1060 0/0:25,0:25:72.19:0,72,833 0/0:20,0:20:57.16:0,57,663 0/0:83,0:83:99:0,223,2700 0/0:21,0:21:63.18:0,63,751 0/0:26,0:26:75.22:0,75,905 0/0:32,0:32:90.22:0,90,1077 0/0:41,0:42:99:0,117,1372 0/0:59,0:59:99:0,172,2101 0/0:48,0:50:99:0,135,1642 0/0:42,0:42:99:0,123,1449 0/0:57,0:57:99:0,166,2106 0/0:28,0:28:81.23:0,81,994 0/0:36,0:36:99:0,99,1294 0/0:27,0:27:78.24:0,78,986 0/0:15,0:15:39.12:0,39,480 0/0:28,0:28:78.24:0,78,981 0/0:17,0:17:51.15:0,51,608 0/0:24,0:24:72.21:0,72,864 0/0:19,0:19:57.17:0,57,686 0/0:56,0:56:99:0,150,1840 0/0:27,0:27:72.21:0,72,864 0/0:23,0:23:63.17:0,63,737 0/0:30,0:30:84.23:0,84,984 0/0:21,0:21:54.13:0,54,639 0/0:35,0:35:90.25:0,90,1106 0/1:15,12:27:99:341,0,412 0/0:22,0:22:63.19:0,63,753 0/0:23,0:23:66.19:0,66,777 0/0:21,0:21:57.15:0,57,670 0/0:16,0:16:45.14:0,45,551 19 4361714 . G A 1401.84 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.444;DP=2380;Dels=0.00;FS=9.855;HRun=0;HaplotypeScore=1.2180;InbreedingCoeff=-0.0244;MQ=58.86;MQ0=0;MQRankSum=-0.185;QD=12.98;ReadPosRankSum=1.593 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,123,1494 0/0:50,0:51:99:0,126,1537 0/0:50,0:50:99:0,120,1440 0/0:109,0:109:99:0,283,3481 0/0:92,0:92:99:0,232,2885 0/0:69,1:70:99:0,148,2100 0/0:59,0:59:99:0,156,1950 0/0:51,0:51:99:0,138,1703 0/0:48,0:48:99:0,126,1446 0/0:32,0:32:72.18:0,72,832 0/0:51,0:51:99:0,117,1422 0/0:31,0:31:84.23:0,84,983 0/0:48,0:48:99:0,123,1428 0/0:47,0:47:99:0,108,1318 0/0:146,0:147:99:0,346,4166 0/0:40,0:40:99:0,105,1210 0/0:54,0:54:99:0,135,1571 0/0:38,0:38:99:0,102,1154 0/0:62,0:63:99:0,153,1819 0/0:96,0:96:99:0,226,2706 0/0:93,0:93:99:0,235,2769 0/0:57,0:57:99:0,141,1691 0/0:99,0:99:99:0,250,3158 0/0:56,0:56:99:0,138,1721 0/0:73,0:73:99:0,187,2302 0/0:33,0:34:84.24:0,84,1032 0/0:37,0:38:99:0,99,1153 0/0:57,0:57:99:0,147,1727 0/0:36,0:36:93.26:0,93,1070 0/0:56,0:56:99:0,138,1651 0/0:35,0:35:90.19:0,90,1032 0/0:73,0:73:99:0,190,2298 0/0:44,0:44:99:0,114,1343 0/0:32,0:32:84.18:0,84,963 0/0:44,0:44:99:0,114,1365 0/0:50,0:50:99:0,129,1571 0/1:30,31:61:99:733,0,774 0/1:19,28:47:99:731,0,454 0/0:50,0:51:99:0,132,1470 0/0:38,0:38:99:0,105,1237 0/0:33,0:34:99:0,99,1133 0/0:40,0:40:96.27:0,96,1164 19 4362691 . G C 13271.14 . AC=22;AF=0.262;AN=84;BaseQRankSum=-13.470;DP=2814;Dels=0.00;FS=2.435;HRun=0;HaplotypeScore=2.2106;InbreedingCoeff=0.1378;MQ=59.18;MQ0=0;MQRankSum=0.012;QD=14.30;ReadPosRankSum=-1.829 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,156,1990 0/1:31,18:50:99:417,0,963 1/1:0,30:30:81.22:953,81,0 0/0:162,0:162:99:0,412,5470 0/0:147,0:147:99:0,373,4989 0/0:114,0:115:99:0,283,3808 0/1:52,30:82:99:839,0,1538 0/0:97,0:97:99:0,259,3317 1/1:0,34:34:99:1146,99,0 0/1:21,10:32:99:225,0,635 0/1:24,10:34:99:251,0,738 0/0:56,0:56:99:0,156,1947 0/1:13,8:21:99:143,0,433 0/0:31,0:31:84.26:0,84,1062 0/0:143,2:146:99:0,370,4637 0/0:48,0:48:99:0,132,1623 0/0:42,0:42:99:0,105,1354 0/1:17,18:35:99:527,0,469 0/1:40,36:77:99:947,0,1013 0/0:110,0:110:99:0,286,3586 0/1:51,35:87:99:827,0,1445 1/1:1,56:58:99:1655,118,0 0/0:184,0:184:99:0,454,6108 0/1:38,34:72:99:890,0,1114 0/0:129,0:129:99:0,334,4362 0/1:37,34:71:99:932,0,1030 0/0:35,0:35:90.28:0,90,1140 0/0:45,0:46:99:0,120,1472 0/0:30,0:30:84.25:0,84,1038 0/1:44,16:60:99:348,0,1234 0/0:40,0:40:99:0,108,1363 0/0:118,0:119:99:0,301,3827 1/1:1,61:62:99:1909,132,0 0/1:25,14:39:99:362,0,769 0/1:30,17:47:99:409,0,930 0/1:20,17:37:99:492,0,547 0/0:99,1:100:99:0,244,3087 0/0:46,0:46:99:0,114,1462 0/0:44,0:44:99:0,117,1496 0/0:37,0:37:93.28:0,93,1164 0/0:25,0:26:75.22:0,75,907 0/0:36,0:36:99:0,105,1271 19 4442999 . T G 17279.84 . AC=84;AF=1.000;AN=84;BaseQRankSum=1.686;DP=537;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4887;InbreedingCoeff=-0.0025;MQ=58.90;MQ0=0;MQRankSum=1.186;QD=32.18;ReadPosRankSum=0.293 GT:AD:DP:GQ:PL 1/1:0,6:6:15.04:176,15,0 1/1:0,12:12:33.08:378,33,0 1/1:0,6:6:18.03:185,18,0 1/1:0,12:12:33.11:423,33,0 1/1:1,13:14:36.11:464,36,0 1/1:0,18:18:48.16:646,48,0 1/1:0,12:12:36.10:449,36,0 1/1:0,12:12:30.10:394,30,0 1/1:0,11:11:30.06:326,30,0 1/1:0,14:14:36.11:435,36,0 1/1:0,11:11:33.08:369,33,0 1/1:0,10:10:30.07:326,30,0 1/1:0,6:6:15.04:169,15,0 1/1:0,20:20:57.15:662,57,0 1/1:0,39:39:99:1324,114,0 1/1:0,13:13:39.08:425,39,0 1/1:0,6:6:15.04:161,15,0 1/1:0,10:10:27.07:306,27,0 1/1:0,23:24:63.14:697,63,0 1/1:0,25:25:72.17:787,72,0 1/1:0,13:13:36.09:393,36,0 1/1:0,11:11:27.08:328,27,0 1/1:0,27:27:69.22:918,69,0 1/1:0,13:13:30.10:397,30,0 1/1:0,8:8:24.08:318,24,0 1/1:0,8:8:15.05:192,15,0 1/1:0,8:8:21.05:242,21,0 1/1:0,14:14:42.09:463,42,0 1/1:0,11:11:30.08:354,30,0 1/1:0,12:12:33.10:398,33,0 1/1:0,13:13:39.10:438,39,0 1/1:0,13:13:39.10:431,39,0 1/1:0,11:11:30.09:368,30,0 1/1:0,9:9:24.07:286,24,0 1/1:0,14:14:36.10:413,36,0 1/1:0,12:12:33.09:394,33,0 1/1:0,12:12:27.08:335,27,0 1/1:0,7:7:21.06:234,21,0 1/1:0,8:8:24.06:273,24,0 1/1:0,12:12:36.10:416,36,0 1/1:0,7:7:15.04:179,15,0 1/1:0,13:13:33.10:409,33,0 19 4452411 . T G 197.41 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.941;DP=1263;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.6064;InbreedingCoeff=-0.0121;MQ=58.79;MQ0=0;MQRankSum=-0.367;QD=8.58;ReadPosRankSum=-0.213 GT:AD:DP:GQ:PL 0/0:25,1:26:72.19:0,72,845 0/0:24,1:25:69.21:0,69,832 0/0:13,0:13:36.10:0,36,433 0/0:57,0:57:99:0,172,2033 0/0:69,0:69:99:0,202,2453 0/0:38,0:38:99:0,111,1377 0/0:35,1:36:99:0,99,1180 0/0:37,0:37:99:0,111,1303 0/0:28,0:28:75.23:0,75,915 0/0:16,1:17:45.14:0,45,541 0/0:22,0:22:66.19:0,66,770 0/0:19,0:20:54.16:0,54,659 0/0:13,0:13:33.10:0,33,415 0/0:30,0:30:87.27:0,87,1071 0/0:66,2:68:99:0,162,2132 0/0:17,0:17:45.13:0,45,535 0/0:28,0:28:75.22:0,75,913 0/0:14,0:14:39.12:0,39,479 0/0:37,0:38:99:0,111,1313 0/0:67,0:67:99:0,177,2144 0/0:35,2:38:90.24:0,90,1069 0/0:29,0:29:78.22:0,78,922 0/0:74,0:75:99:0,217,2590 0/0:29,0:29:84.24:0,84,1008 0/0:36,0:36:99:0,105,1239 0/0:26,0:26:78.21:0,78,931 0/0:23,0:23:63.19:0,63,765 0/0:22,0:22:57.16:0,57,698 0/0:11,0:11:33.09:0,33,376 0/0:24,0:24:69.17:0,69,797 0/0:15,0:15:45.12:0,45,525 0/0:30,0:30:78.23:0,78,957 0/0:26,1:27:66.19:0,66,773 0/0:14,0:14:42.13:0,42,511 0/0:17,0:17:42.13:0,42,510 0/0:23,0:24:69.21:0,69,835 0/0:52,0:52:99:0,144,1726 0/0:14,0:15:36.10:0,36,439 0/0:20,0:20:54.17:0,54,679 0/0:25,0:25:75.23:0,75,902 0/0:25,0:25:75.20:0,75,875 0/1:13,10:23:99:244,0,362 19 4457650 . C T 6319.80 . AC=21;AF=0.250;AN=84;BaseQRankSum=-12.366;DP=1094;Dels=0.00;FS=0.296;HRun=2;HaplotypeScore=0.6299;InbreedingCoeff=0.1743;MQ=58.44;MQ0=0;MQRankSum=0.133;QD=16.08;ReadPosRankSum=-1.058 GT:AD:DP:GQ:PL 0/0:18,0:18:42.14:0,42,563 0/1:7,11:18:99:302,0,158 1/1:0,19:19:48.15:609,48,0 0/0:55,0:55:99:0,123,1698 0/0:39,0:39:96.32:0,96,1329 0/0:36,0:36:93.30:0,93,1270 0/0:27,0:27:66.21:0,66,905 0/0:31,0:31:66.22:0,66,926 1/1:0,22:22:48.15:624,48,0 0/1:9,13:22:99:383,0,224 0/1:11,10:21:99:284,0,297 0/0:20,0:20:51.15:0,51,635 0/1:13,5:18:99:137,0,378 0/0:20,0:20:48.15:0,48,617 0/0:71,0:71:99:0,153,2067 0/0:21,0:21:54.17:0,54,706 0/0:32,0:32:66.21:0,66,889 0/1:6,15:21:99:432,0,163 0/1:17,18:35:99:414,0,473 0/0:25,0:25:60.19:0,60,783 0/1:12,21:33:99:540,0,345 1/1:0,26:26:60.19:775,60,0 0/0:47,0:47:99:0,105,1458 0/1:16,12:28:99:346,0,364 0/0:32,0:32:75.25:0,75,1052 0/1:22,7:30:99:203,0,606 0/0:24,0:24:57.18:0,57,749 0/0:26,0:26:66.21:0,66,858 0/0:17,0:17:45.14:0,45,582 0/1:18,10:28:99:261,0,450 0/0:17,0:17:45.14:0,45,579 0/0:31,0:31:75.24:0,75,996 1/1:0,13:13:33.10:421,33,0 0/1:8,12:20:99:259,0,233 0/1:11,7:18:99:177,0,306 0/1:13,8:21:99:152,0,410 0/0:26,0:26:63.20:0,63,824 0/0:22,0:22:51.14:0,51,659 0/0:11,0:11:30.09:0,30,379 0/0:13,0:14:39.12:0,39,492 0/0:22,1:23:22.36:0,22,667 0/0:16,0:16:42.13:0,42,542 19 4548434 . A C 63.85 . AC=4;AF=0.048;AN=84;BaseQRankSum=-17.106;DP=1256;Dels=0.00;FS=63.992;HRun=2;HaplotypeScore=1.1844;InbreedingCoeff=-0.0858;MQ=58.42;MQ0=0;MQRankSum=-0.706;QD=0.43;ReadPosRankSum=-6.909 GT:AD:DP:GQ:PL 0/1:7,4:11:37.13:37,0,169 0/0:7,0:7:18.05:0,18,201 0/0:13,7:20:36.07:0,36,393 0/0:57,22:79:99:0,101,1429 0/0:43,16:60:78.45:0,78,1021 0/0:31,6:38:54.09:0,54,595 0/0:23,15:38:33.41:0,33,606 0/0:24,11:36:22.56:0,23,526 0/0:14,6:20:36.09:0,36,411 0/0:21,5:26:22.40:0,22,456 0/0:11,3:14:27.06:0,27,300 0/0:19,6:25:48.11:0,48,537 0/0:8,4:12:18.03:0,18,188 0/0:19,4:23:45.10:0,45,480 0/0:46,21:68:18.24:0,18,1153 0/0:24,5:29:15.81:0,16,634 0/0:8,3:11:1.09:5,0,240 0/0:8,7:15:1.89:3,0,204 0/0:26,13:39:26.84:0,27,638 0/0:40,10:50:99:0,99,1162 0/1:15,8:23:40.87:41,0,354 0/0:27,11:38:75.12:0,75,788 0/1:48,38:86:33.97:34,0,1256 0/0:32,7:39:48.43:0,48,736 0/0:25,10:35:38.40:0,38,577 0/0:35,9:44:78.07:0,78,806 0/0:19,6:25:48.14:0,48,564 0/0:11,3:14:27.04:0,27,286 0/0:12,4:16:36.08:0,36,410 0/0:20,4:24:51.12:0,51,564 0/0:22,2:24:54.15:0,54,624 0/0:39,13:52:86.27:0,86,1090 0/0:36,8:44:84.20:0,84,935 0/0:14,6:20:11.40:0,11,314 0/0:12,5:17:33.03:0,33,339 0/0:14,4:18:42.11:0,42,475 0/1:20,7:27:35.70:36,0,439 0/0:12,9:21:2.38:0,2,266 0/0:13,4:17:3.60:0,4,342 0/0:13,1:14:33.09:0,33,380 0/0:12,3:16:2.48:0,2,300 0/0:15,6:21:16.40:0,16,405 19 4554458 . C G 7.19 . AC=1;AF=0.012;AN=84;BaseQRankSum=-17.661;DP=2184;Dels=0.00;FS=548.155;HRun=1;HaplotypeScore=2.1640;InbreedingCoeff=-0.0213;MQ=59.19;MQ0=0;MQRankSum=0.056;QD=0.10;ReadPosRankSum=-14.084 GT:AD:DP:GQ:PL 0/0:48,7:55:76.47:0,76,1093 0/0:33,8:42:45.74:0,46,920 0/0:26,6:32:51.74:0,52,833 0/0:50,8:58:98.83:0,99,1540 0/0:47,13:60:99:0,132,1633 0/0:31,9:40:32.77:0,33,867 0/0:37,8:45:86.64:0,87,1338 0/0:40,11:51:99:0,108,1325 0/0:45,6:51:67.83:0,68,1236 0/0:43,8:51:31.34:0,31,1181 0/0:36,2:38:87.22:0,87,1049 0/0:46,4:51:99:0,105,1212 0/0:25,4:29:34.53:0,35,691 0/0:58,5:63:62.46:0,62,1602 0/0:141,40:182:99:0,153,3671 0/0:23,7:30:24.93:0,25,665 0/0:33,4:37:66.52:0,67,1011 0/0:33,7:40:81.13:0,81,936 0/1:50,19:69:52.24:52,0,1068 0/0:75,14:89:99:0,161,1993 0/0:47,13:62:99:0,107,1209 0/0:52,9:61:99:0,119,1635 0/0:50,10:60:94.77:0,95,1541 0/0:26,4:30:63.05:0,63,740 0/0:45,7:52:99:0,117,1502 0/0:29,4:33:66.19:0,66,861 0/0:29,4:33:53.49:0,53,820 0/0:30,8:38:12.99:0,13,729 0/0:39,8:47:56.96:0,57,1204 0/0:38,5:43:87.23:0,87,1057 0/0:32,8:40:39.87:0,40,991 0/0:73,14:87:99:0,114,2017 0/0:48,6:54:99:0,114,1346 0/0:27,7:34:66.14:0,66,805 0/0:47,4:52:91.60:0,92,1351 0/0:54,1:55:99:0,126,1498 0/0:46,15:61:90.57:0,91,1346 0/0:43,6:49:99:0,102,1240 0/0:42,2:44:72.60:0,73,1153 0/0:33,10:43:1.54:4,0,786 0/0:32,7:39:29.22:0,29,856 0/0:47,6:53:56.28:0,56,1390 19 4689660 . G A 77.38 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.029;DP=299;Dels=0.00;FS=1.707;HRun=0;HaplotypeScore=0.1984;InbreedingCoeff=-0.0447;MQ=58.66;MQ0=0;MQRankSum=0.610;QD=5.95;ReadPosRankSum=-0.556 GT:AD:DP:GQ:PL 0/0:3,0:3:9.02:0,9,95 0/0:5,0:5:15.04:0,15,171 0/0:3,0:3:9.02:0,9,96 0/0:12,0:12:33.08:0,33,426 0/0:5,0:5:12.03:0,12,147 0/0:4,0:4:9.02:0,9,103 0/0:7,0:7:15.05:0,15,200 0/0:7,0:7:21.06:0,21,255 0/0:5,0:5:15.04:0,15,172 0/0:4,0:4:9.03:0,9,112 0/0:6,0:6:18.05:0,18,202 0/1:5,2:7:51.78:52,0,82 0/0:3,0:3:9.03:0,9,102 0/1:3,3:6:81.18:88,0,81 0/0:21,0:21:57.16:0,57,671 0/0:11,0:11:33.09:0,33,371 0/0:4,0:4:12.03:0,12,139 0/0:6,0:6:18.05:0,18,205 0/0:18,0:18:48.12:0,48,550 0/0:9,0:9:24.06:0,24,274 0/0:12,0:12:33.07:0,33,379 0/0:8,0:8:24.07:0,24,281 0/0:9,0:9:21.07:0,21,285 0/0:4,0:4:9.03:0,9,112 0/0:3,0:3:9.03:0,9,120 0/0:5,0:5:15.05:0,15,191 0/0:3,0:3:9.02:0,9,97 0/0:7,0:7:21.06:0,21,234 0/0:5,0:5:15.04:0,15,172 0/0:4,0:4:12.03:0,12,139 0/0:5,0:5:9.03:0,9,117 0/0:11,0:11:33.07:0,33,362 0/0:8,0:8:21.05:0,21,244 0/0:4,0:4:9.03:0,9,115 0/0:5,0:5:15.04:0,15,172 0/0:9,0:9:27.07:0,27,302 0/0:14,0:14:30.09:0,30,370 0/0:6,0:6:18.05:0,18,204 0/0:9,0:9:27.07:0,27,301 0/0:8,0:8:21.06:0,21,229 0/0:8,0:8:24.06:0,24,267 0/0:6,0:6:18.05:0,18,201 19 4859937 . T C 26318.60 . AC=54;AF=0.643;AN=84;BaseQRankSum=2.947;DP=1328;Dels=0.00;FS=0.669;HRun=0;HaplotypeScore=0.7419;InbreedingCoeff=0.0667;MQ=59.21;MQ0=0;MQRankSum=-0.221;QD=23.93;ReadPosRankSum=-3.320 GT:AD:DP:GQ:PL 1/1:0,23:23:63.18:757,63,0 0/1:11,8:19:99:209,0,312 0/1:9,10:19:99:295,0,266 0/0:64,0:64:99:0,181,2156 0/1:27,31:58:99:846,0,797 1/1:0,46:46:99:1609,126,0 1/1:0,43:43:99:1506,117,0 1/1:0,52:52:99:1919,150,0 1/1:1,24:25:69.20:805,69,0 1/1:0,23:23:66.18:772,66,0 1/1:0,22:22:57.15:671,57,0 1/1:0,26:26:69.17:772,69,0 0/1:9,8:17:99:211,0,272 0/1:10,8:18:99:218,0,276 0/0:73,1:74:99:0,193,2334 0/1:15,14:29:99:410,0,403 0/0:22,0:22:57.18:0,57,700 0/1:8,14:22:99:360,0,203 0/1:18,25:43:99:632,0,479 1/1:0,43:43:99:1386,114,0 1/1:0,26:26:60.17:709,60,0 1/1:0,21:21:60.16:672,60,0 0/1:36,38:75:99:1170,0,1038 1/1:0,32:32:84.26:1064,84,0 1/1:0,49:49:99:1738,135,0 1/1:0,26:26:75.22:937,75,0 0/1:22,9:31:99:208,0,671 0/1:14,13:27:99:377,0,394 1/1:0,28:28:81.22:939,81,0 0/1:11,8:19:99:198,0,327 1/1:0,30:30:84.23:991,84,0 1/1:0,34:34:96.28:1134,96,0 0/0:23,0:23:63.19:0,63,778 0/0:24,0:24:66.20:0,66,795 0/1:12,7:19:99:168,0,367 0/1:16,8:24:99:158,0,472 0/1:16,23:39:99:647,0,316 0/0:21,0:21:60.15:0,60,680 1/1:0,20:20:51.15:616,51,0 0/1:6,13:19:99:363,0,140 0/1:6,16:22:99:454,0,132 0/1:17,14:31:99:398,0,438 19 4929413 . T C 7574.94 . AC=26;AF=0.310;AN=84;BaseQRankSum=8.289;DP=987;Dels=0.00;FS=4.369;HRun=0;HaplotypeScore=0.9865;InbreedingCoeff=0.1080;MQ=57.92;MQ0=0;MQRankSum=-1.883;QD=16.22;ReadPosRankSum=-0.794 GT:AD:DP:GQ:PL 0/0:17,0:19:45.11:0,45,498 0/0:13,0:13:36.10:0,36,416 0/1:8,9:18:99:292,0,204 0/0:37,0:37:96.28:0,96,1115 0/0:33,0:33:90.25:0,90,1027 0/0:23,0:23:60.14:0,60,663 0/0:16,0:16:48.13:0,48,548 0/0:23,1:24:23.13:0,23,625 0/1:14,8:24:99:171,0,378 0/0:13,0:13:39.11:0,39,442 0/1:4,9:13:78.68:187,0,79 0/0:22,0:22:39.11:0,39,442 0/0:21,0:21:54.15:0,54,612 0/0:30,0:30:78.22:0,78,900 0/1:34,25:59:99:620,0,930 0/1:9,6:15:99:143,0,264 0/1:11,5:16:91.42:91,0,262 1/1:0,11:11:24.07:295,24,0 0/1:17,20:38:99:611,0,456 0/0:38,0:39:99:0,105,1232 0/1:15,22:37:99:543,0,359 1/1:0,30:30:87.23:1035,87,0 0/0:37,0:38:99:0,99,1128 0/1:8,8:16:99:140,0,207 0/0:31,0:31:81.23:0,81,948 1/1:1,20:21:24.93:695,25,0 0/0:12,0:12:36.10:0,36,410 0/0:22,0:24:63.17:0,63,718 0/0:18,0:19:45.13:0,45,512 0/1:8,11:19:99:306,0,217 0/1:13,6:19:99:163,0,329 0/0:33,0:34:93.24:0,93,1052 0/0:17,0:18:48.14:0,48,569 0/1:11,7:18:99:114,0,312 0/1:12,5:17:90.22:90,0,337 0/0:22,0:22:66.15:0,66,742 1/1:0,29:30:84.22:981,84,0 1/1:0,16:18:45.13:544,45,0 0/1:8,9:17:99:255,0,203 0/0:32,0:32:87.24:0,87,993 0/1:8,11:19:99:254,0,199 0/1:9,3:12:43.05:43,0,220 19 4929473 . A G 12003.81 . AC=26;AF=0.310;AN=84;BaseQRankSum=8.562;DP=1528;Dels=0.00;FS=1.416;HRun=0;HaplotypeScore=1.2247;InbreedingCoeff=0.1086;MQ=58.73;MQ0=0;MQRankSum=-1.128;QD=16.70;ReadPosRankSum=-2.602 GT:AD:DP:GQ:PL 0/0:34,0:34:96.26:0,96,1105 0/0:31,0:31:87.24:0,87,1057 0/1:17,15:32:99:450,0,505 0/0:70,0:70:99:0,175,2184 0/0:34,0:34:93.29:0,93,1176 0/0:28,0:28:72.22:0,72,920 0/0:31,0:31:84.26:0,84,1065 0/0:43,0:43:99:0,114,1410 0/1:15,11:26:99:281,0,435 0/0:21,0:21:63.19:0,63,747 0/1:17,13:30:99:399,0,488 0/0:19,0:19:54.16:0,54,641 0/0:29,0:29:81.25:0,81,975 0/0:32,0:32:87.27:0,87,1067 0/1:45,35:80:99:999,0,1208 0/1:24,14:38:99:415,0,675 0/1:13,2:15:35.45:35,0,364 1/1:0,21:21:57.18:718,57,0 0/1:20,34:54:99:963,0,504 0/0:83,0:83:99:0,214,2616 0/1:32,23:55:99:594,0,878 1/1:0,45:45:99:1407,111,0 0/0:51,0:51:99:0,135,1665 0/1:16,11:27:99:343,0,450 0/0:49,2:51:78.61:0,79,1472 1/1:1,24:25:26.21:742,26,0 0/0:19,0:19:54.17:0,54,653 0/0:33,0:33:99:0,99,1179 0/0:26,0:26:72.19:0,72,851 0/1:18,12:30:99:298,0,528 0/1:22,26:48:99:723,0,569 0/0:67,0:67:99:0,187,2254 0/0:35,0:35:96.29:0,96,1175 0/1:20,17:37:99:413,0,525 0/1:4,3:7:57.54:58,0,118 0/0:38,0:38:93.29:0,93,1157 1/1:0,38:38:99:1244,102,0 1/1:0,29:29:75.24:957,75,0 0/1:14,7:21:99:167,0,400 0/0:34,0:34:96.26:0,96,1131 0/1:14,16:30:99:466,0,379 0/1:18,13:31:99:330,0,501 19 4944192 . A G 84.72 . AC=3;AF=0.036;AN=84;BaseQRankSum=-11.446;DP=1217;Dels=0.00;FS=161.558;HRun=3;HaplotypeScore=0.7953;InbreedingCoeff=-0.0736;MQ=38.20;MQ0=112;MQRankSum=4.867;QD=1.01;ReadPosRankSum=-9.601 GT:AD:DP:GQ:PL 0/0:13,10:23:5.52:0,6,374 0/0:17,4:21:39.11:0,39,456 0/0:11,4:15:27.07:0,27,307 0/0:30,17:47:69.71:0,70,814 0/0:15,18:33:39.11:0,39,450 0/0:22,7:29:13.77:0,14,498 0/0:24,8:32:66.18:0,66,773 0/1:9,16:25:65.62:66,0,217 0/0:12,17:29:18.05:0,18,210 0/0:11,9:20:27.08:0,27,309 0/0:7,2:9:21.06:0,21,241 0/0:13,8:21:2.34:1,0,285 0/0:12,9:21:24.07:0,24,281 0/1:14,11:25:20.94:21,0,386 0/0:60,22:82:62.58:0,63,1439 0/0:14,9:23:27.08:0,27,324 0/0:18,8:26:42.10:0,42,484 0/0:8,5:13:21.06:0,21,253 0/0:36,9:45:60.84:0,61,1050 0/0:35,18:53:54.55:0,55,905 0/0:28,9:37:6.52:0,7,644 0/0:25,14:39:48.15:0,48,585 0/0:24,21:45:8.88:0,9,652 0/0:23,9:32:57.14:0,57,677 0/0:20,10:30:13.57:0,14,456 0/0:18,7:25:48.13:0,48,560 0/0:16,5:21:42.11:0,42,500 0/0:10,12:22:24.07:0,24,278 0/0:9,5:14:21.06:0,21,245 0/0:17,4:21:45.12:0,45,509 0/0:15,10:25:23.44:0,23,473 0/0:34,14:48:69.21:0,69,831 0/0:23,11:34:63.16:0,63,717 0/0:9,7:16:1.90:3,0,210 0/0:12,8:20:0.56:9,0,184 0/0:18,12:30:48.12:0,48,543 0/1:24,10:34:69.84:70,0,669 0/0:23,8:32:42.12:0,42,494 0/0:15,9:24:30.07:0,30,336 0/0:22,6:29:25.43:0,25,488 0/0:13,9:22:27.07:0,27,304 0/0:16,9:25:33.09:0,33,381 19 5144896 . A C 1478.25 . AC=27;AF=0.321;AN=84;BaseQRankSum=-24.473;DP=2465;Dels=0.00;FS=2338.993;HRun=2;HaplotypeScore=2.5211;InbreedingCoeff=-0.4851;MQ=58.39;MQ0=0;MQRankSum=-1.256;QD=0.91;ReadPosRankSum=-23.513 GT:AD:DP:GQ:PL 0/0:33,11:44:64.73:0,65,1078 0/1:21,22:43:99:128,0,624 0/1:22,15:37:53.93:54,0,615 0/1:95,54:150:99:118,0,2904 0/1:64,34:98:5.91:6,0,1859 0/0:48,15:63:68.45:0,68,1544 0/0:45,20:65:4.20:0,4,1379 0/0:41,18:59:6.40:0,6,1236 0/1:25,16:41:13.78:14,0,705 0/1:24,12:36:62.36:62,0,743 0/0:29,22:51:19.20:0,19,937 0/1:26,13:39:50.68:51,0,768 0/0:29,14:43:2.99:0,3,829 0/1:31,15:46:53.98:54,0,991 0/1:108,61:169:37.67:38,0,3071 0/0:39,20:59:3.63:0,4,1179 0/1:21,9:30:71.44:71,0,662 0/1:26,14:40:53.78:54,0,849 0/1:45,24:69:28.43:28,0,1357 0/0:63,28:91:44.10:0,44,1848 0/0:43,12:55:43.26:0,43,1447 0/1:23,12:35:52.37:52,0,638 0/1:86,42:128:43.68:44,0,2559 0/0:37,13:50:13.23:0,13,1268 0/1:43,19:62:2.76:0,1,1202 0/1:35,21:56:20.57:21,0,990 0/1:38,23:61:44.94:45,0,978 0/0:35,11:46:29.15:0,29,1045 0/0:35,16:51:31.37:0,31,1155 0/0:31,17:48:18.51:0,19,879 0/1:29,14:43:95.10:95,0,929 0/0:42,22:64:11.58:0,12,1324 0/1:40,28:68:32.78:33,0,1151 0/1:23,9:32:19.22:19,0,758 0/1:25,24:49:99:174,0,707 0/0:41,9:50:64.24:0,64,1309 0/1:46,20:66:69.24:69,0,1330 0/1:31,16:47:45.21:45,0,879 0/1:27,18:45:99:159,0,832 0/1:29,16:45:52.82:53,0,823 0/1:28,18:46:58.69:59,0,881 0/1:26,19:45:99:105,0,775 19 5210762 . G A 1282.50 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.603;DP=1819;Dels=0.00;FS=5.987;HRun=2;HaplotypeScore=1.3635;InbreedingCoeff=-0.0244;MQ=58.87;MQ0=0;MQRankSum=1.696;QD=10.43;ReadPosRankSum=2.545 GT:AD:DP:GQ:PL 0/0:21,0:21:60.17:0,60,719 0/0:42,0:42:99:0,114,1387 0/0:27,0:27:78.23:0,78,945 0/0:68,0:69:99:0,202,2559 0/0:64,0:64:99:0,181,2311 0/0:48,0:48:99:0,132,1731 0/0:39,0:39:99:0,111,1447 0/0:57,0:57:99:0,156,2056 0/0:50,0:50:99:0,132,1613 0/0:24,0:24:57.15:0,57,676 0/0:31,0:31:75.23:0,75,946 0/0:35,0:35:96.29:0,96,1170 0/0:25,0:25:69.18:0,69,810 0/0:31,0:31:84.24:0,84,1024 0/0:130,0:130:99:0,322,4003 0/0:38,0:38:99:0,105,1257 0/0:39,0:39:99:0,102,1244 0/0:25,0:25:69.21:0,69,848 0/0:49,0:49:99:0,144,1698 0/0:60,0:60:99:0,150,1838 0/0:64,0:66:99:0,159,1981 0/0:43,0:43:99:0,102,1270 0/1:32,30:63:99:863,0,1023 0/0:38,0:39:99:0,99,1301 0/1:40,20:60:99:482,0,1241 0/0:46,0:46:99:0,117,1536 0/0:36,0:36:99:0,102,1232 0/0:35,0:35:99:0,99,1169 0/0:45,0:45:99:0,117,1435 0/0:28,0:28:72.20:0,72,884 0/0:50,0:50:99:0,141,1707 0/0:62,0:62:99:0,168,2003 0/0:44,0:44:99:0,123,1477 0/0:22,0:22:63.14:0,63,726 0/0:25,0:25:63.19:0,63,784 0/0:39,0:39:99:0,102,1250 0/0:43,0:45:99:0,120,1436 0/0:43,0:43:99:0,117,1420 0/0:45,0:45:99:0,132,1600 0/0:35,0:35:96.28:0,96,1165 0/0:18,0:18:48.14:0,48,589 0/0:26,0:26:78.19:0,78,912 19 5210782 . G A 12234.60 . AC=21;AF=0.250;AN=84;BaseQRankSum=-13.413;DP=1729;Dels=0.00;FS=1.681;HRun=1;HaplotypeScore=1.2949;InbreedingCoeff=0.0476;MQ=58.68;MQ0=0;MQRankSum=2.493;QD=16.60;ReadPosRankSum=2.233 GT:AD:DP:GQ:PL 0/1:17,6:23:99:139,0,358 0/0:32,0:32:90.25:0,90,1098 0/1:17,7:24:99:176,0,564 0/1:35,45:80:99:1190,0,1052 0/0:59,0:59:99:0,160,2136 0/0:55,0:55:99:0,138,1820 0/1:24,14:38:99:392,0,720 0/0:63,0:63:99:0,144,1936 0/1:23,18:41:99:458,0,677 0/1:16,12:29:99:291,0,369 0/0:26,0:26:72.19:0,72,853 0/0:35,0:35:90.27:0,90,1130 0/0:21,0:21:57.18:0,57,721 0/0:28,0:28:81.25:0,81,1006 0/0:103,0:103:99:0,256,3222 0/0:35,0:35:96.29:0,96,1177 0/0:38,0:38:99:0,111,1348 0/0:15,0:15:42.13:0,42,521 0/0:51,0:52:99:0,132,1643 0/0:50,0:50:99:0,129,1603 0/0:74,0:76:99:0,187,2312 0/1:23,20:43:99:458,0,686 1/1:0,71:72:99:2173,175,0 0/1:18,14:32:99:359,0,578 1/1:0,55:55:99:1760,144,0 0/0:40,0:40:99:0,105,1359 0/1:12,18:30:99:459,0,328 0/1:15,18:33:99:533,0,426 0/1:21,21:43:99:557,0,622 0/1:17,11:28:99:295,0,435 0/0:44,0:44:99:0,123,1557 0/0:58,0:58:99:0,153,1947 0/1:21,27:48:99:774,0,587 0/0:33,0:33:93.28:0,93,1141 0/0:20,0:20:54.16:0,54,686 0/0:34,0:34:87.27:0,87,1097 1/1:0,48:49:99:1540,135,0 0/1:24,10:34:99:203,0,708 0/1:17,18:35:99:478,0,435 0/0:29,0:29:78.25:0,78,990 0/0:14,0:14:39.12:0,39,473 0/0:32,0:32:84.20:0,84,1003 19 5214697 . A G 35350.87 . 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G A 2529.52 . AC=5;AF=0.060;AN=84;BaseQRankSum=6.396;DP=1725;Dels=0.00;FS=1.786;HRun=0;HaplotypeScore=1.5542;InbreedingCoeff=-0.0633;MQ=58.78;MQ0=0;MQRankSum=-0.587;QD=11.45;ReadPosRankSum=1.507 GT:AD:DP:GQ:PL 0/1:17,13:30:99:351,0,427 0/0:23,0:23:63.18:0,63,746 0/0:28,0:28:78.20:0,78,881 0/0:85,0:85:99:0,238,2828 0/0:80,0:80:99:0,232,2848 0/1:38,29:67:99:805,0,1002 0/1:33,16:49:99:471,0,827 0/0:68,0:68:99:0,162,2033 0/0:32,0:32:81.22:0,81,941 0/0:28,0:28:81.23:0,81,951 0/0:30,0:30:84.19:0,84,912 0/0:30,0:30:78.21:0,78,876 0/0:31,0:31:81.22:0,81,938 0/0:36,0:36:96.24:0,96,1090 0/0:114,0:115:99:0,271,3163 0/0:38,0:38:99:0,105,1135 0/0:23,0:23:66.17:0,66,755 0/0:28,0:28:81.20:0,81,892 0/0:48,0:48:99:0,117,1348 0/0:55,0:55:99:0,144,1673 0/0:38,0:38:96.25:0,96,1091 0/0:32,0:32:90.21:0,90,1003 0/0:91,0:91:99:0,253,3077 0/0:55,0:55:99:0,156,1929 0/0:52,0:52:99:0,144,1791 0/0:39,0:39:99:0,108,1306 0/0:22,0:22:57.15:0,57,644 0/0:32,0:32:75.19:0,75,852 0/0:26,0:26:72.17:0,72,796 0/0:34,0:34:96.22:0,96,1058 0/0:19,0:19:54.14:0,54,604 0/0:45,0:46:99:0,126,1442 0/0:36,0:36:99:0,102,1137 0/0:22,0:22:57.15:0,57,641 0/0:31,1:32:40.43:0,40,858 0/0:33,0:33:87.22:0,87,966 0/1:29,24:53:99:635,0,578 0/0:33,0:33:90.22:0,90,1008 0/1:10,12:22:99:364,0,244 0/0:34,0:34:90.24:0,90,1035 0/0:32,0:32:90.23:0,90,983 0/0:18,0:18:48.14:0,48,568 19 5273547 . C T 789.21 . 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T G 10915.01 . AC=18;AF=0.214;AN=84;BaseQRankSum=9.386;DP=2216;Dels=0.00;FS=35.849;HRun=1;HaplotypeScore=1.8033;InbreedingCoeff=-0.1313;MQ=59.15;MQ0=0;MQRankSum=2.965;QD=14.38;ReadPosRankSum=-3.651 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1474 0/1:19,24:43:99:637,0,397 0/1:17,16:33:99:451,0,444 0/0:118,0:119:99:0,313,3825 0/1:44,30:75:99:909,0,1264 0/0:69,0:69:99:0,196,2433 0/1:29,23:53:99:747,0,728 0/0:60,0:61:99:0,165,1970 0/1:23,18:41:99:542,0,615 0/1:16,10:26:99:212,0,457 0/0:46,0:46:99:0,126,1515 0/1:22,16:38:99:389,0,645 0/0:39,0:39:99:0,105,1244 0/1:19,14:33:99:373,0,480 0/1:42,59:101:99:1708,0,1093 0/0:43,0:43:99:0,120,1397 1/1:0,37:37:99:1300,108,0 0/0:36,0:37:93.27:0,93,1109 0/0:71,1:74:99:0,181,2174 0/0:106,0:106:99:0,289,3435 0/0:82,0:83:99:0,226,2719 0/0:54,0:54:99:0,144,1713 0/1:36,30:68:99:1013,0,969 0/0:49,0:50:99:0,108,1321 0/0:58,0:59:99:0,153,1869 0/0:62,0:67:99:0,175,2150 0/1:13,9:22:99:280,0,337 0/1:17,18:35:99:477,0,442 0/0:46,0:46:99:0,135,1594 0/0:44,1:46:99:0,123,1434 0/0:34,0:34:99:0,102,1216 0/0:78,1:79:99:0,211,2583 0/0:55,0:55:99:0,153,1819 0/1:12,23:35:99:593,0,311 0/1:16,16:32:99:455,0,356 0/0:53,0:54:99:0,150,1775 0/0:75,0:76:99:0,193,2279 0/1:25,21:46:99:648,0,674 0/0:38,0:38:99:0,102,1220 0/0:41,0:41:99:0,114,1369 0/0:32,0:32:87.24:0,87,1040 0/1:31,10:41:99:181,0,826 19 5286119 . A T 1280.38 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.755;DP=1255;Dels=0.00;FS=10.518;HRun=0;HaplotypeScore=0.8115;InbreedingCoeff=-0.0246;MQ=59.00;MQ0=0;MQRankSum=0.531;QD=11.86;ReadPosRankSum=0.286 GT:AD:DP:GQ:PL 0/0:23,0:23:60.19:0,60,746 0/0:12,0:12:36.11:0,36,446 0/0:24,0:24:66.21:0,66,835 0/1:32,21:53:99:625,0,882 0/1:29,26:55:99:718,0,840 0/0:34,0:34:75.24:0,75,989 0/0:31,0:31:78.26:0,78,1048 0/0:41,0:41:99:0,114,1437 0/0:17,0:17:48.15:0,48,594 0/0:24,0:24:66.21:0,66,830 0/0:22,0:22:60.19:0,60,760 0/0:13,0:13:33.10:0,33,419 0/0:13,0:13:39.12:0,39,465 0/0:24,0:24:63.20:0,63,791 0/0:57,0:57:99:0,150,1897 0/0:17,0:17:48.15:0,48,593 0/0:28,0:28:75.24:0,75,949 0/0:19,0:19:54.16:0,54,653 0/0:49,0:49:99:0,135,1656 0/0:43,0:43:99:0,120,1522 0/0:52,0:52:99:0,141,1763 0/0:33,0:33:87.27:0,87,1095 0/0:71,0:71:99:0,175,2279 0/0:48,1:49:99:0,123,1601 0/0:29,0:29:75.24:0,75,978 0/0:49,0:49:99:0,123,1582 0/0:22,0:22:51.16:0,51,661 0/0:32,0:32:75.24:0,75,955 0/0:21,0:21:48.15:0,48,624 0/0:22,0:22:63.17:0,63,769 0/0:16,0:16:45.14:0,45,568 0/0:53,0:54:99:0,135,1737 0/0:24,0:24:63.20:0,63,789 0/0:16,0:16:39.13:0,39,504 0/0:19,0:19:51.16:0,51,640 0/0:13,0:13:39.12:0,39,487 0/0:46,0:46:99:0,126,1553 0/0:19,0:19:51.15:0,51,623 0/0:22,0:22:63.20:0,63,790 0/0:16,0:16:45.14:0,45,555 0/0:6,0:6:18.05:0,18,218 0/0:25,0:25:66.20:0,66,822 19 5587710 . A C 13.83 . AC=6;AF=0.075;AN=80;BaseQRankSum=-3.868;DP=137;Dels=0.00;FS=110.135;HRun=4;HaplotypeScore=0.1135;InbreedingCoeff=-0.1908;MQ=57.47;MQ0=0;MQRankSum=0.163;QD=0.46;ReadPosRankSum=-5.183 GT:AD:DP:GQ:PL 0/1:2,1:3:25.33:25,0,57 0/0:4,2:6:9.03:0,9,106 0/0:2,1:3:6.02:0,6,72 0/0:2,0:2:6.02:0,6,72 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6.02:0,6,75 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,30 0/0:1,1:2:3.01:0,3,35 0/0:4,1:5:9.03:0,9,105 0/0:3,0:3:9.03:0,9,105 0/0:2,1:3:6.02:0,6,70 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3:0,3,28 0/0:14,2:16:12.63:0,13,452 0/1:6,2:8:11.68:12,0,160 0/0:3,0:3:9:0,9,89 0/0:2,0:2:6.02:0,6,69 0/0:5,0:5:15.04:0,15,170 0/1:4,1:5:11.64:12,0,128 0/0:4,1:5:9.91:0,10,105 0/0:1,0:1:3.01:0,3,35 0/0:2,1:3:6.02:0,6,71 0/0:2,1:3:2.92:0,0,32 ./. ./. 0/0:1,0:1:3.01:0,3,35 0/1:1,1:2:23.61:24,0,29 0/0:1,0:1:3.01:0,3,36 0/0:4,1:5:10.85:0,11,113 0/0:1,0:1:3.01:0,3,36 0/0:3,1:4:9.03:0,9,110 0/0:4,0:4:12.03:0,12,135 0/0:1,0:1:3.01:0,3,35 0/0:4,0:4:12.04:0,12,141 0/0:3,0:3:9.03:0,9,104 0/1:6,2:8:10.49:10,0,194 0/0:3,0:3:9.03:0,9,103 0/0:5,1:6:15.04:0,15,174 0/0:2,0:2:6.02:0,6,70 0/1:3,1:4:22.32:22,0,95 0/0:2,1:3:3.01:0,3,36 19 5610045 . G A 1760.80 . 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G A 4171.70 . 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C T 1150.25 . 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C G 1021.43 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.307;DP=1464;Dels=0.00;FS=3.109;HRun=0;HaplotypeScore=0.9673;InbreedingCoeff=-0.0244;MQ=58.98;MQ0=0;MQRankSum=-0.281;QD=17.02;ReadPosRankSum=0.291 GT:AD:DP:GQ:PL 0/0:23,0:23:63.19:0,63,782 0/0:21,0:21:60.18:0,60,741 0/0:20,0:20:51.15:0,51,646 0/0:128,0:128:99:0,304,4058 0/0:79,0:80:99:0,190,2464 0/0:68,0:68:99:0,171,2223 0/0:50,0:50:99:0,120,1600 0/0:65,0:65:99:0,163,2145 0/0:23,0:23:69.21:0,69,846 0/0:15,0:15:42.12:0,42,505 0/0:16,0:16:45.14:0,45,569 0/0:22,0:22:51.15:0,51,632 0/0:14,0:14:39.12:0,39,495 0/1:7,12:19:99:393,0,190 0/0:79,0:79:99:0,196,2422 0/0:31,0:31:87.27:0,87,1078 0/0:22,0:22:60.18:0,60,735 0/0:16,0:16:45.12:0,45,523 0/0:28,0:28:75.21:0,75,898 0/1:16,25:41:99:691,0,372 0/0:39,0:39:99:0,108,1266 0/0:23,0:23:60.19:0,60,766 0/0:100,0:100:99:0,244,3231 0/0:45,0:45:99:0,114,1522 0/0:61,0:61:99:0,168,2140 0/0:36,0:36:84.27:0,84,1135 0/0:19,0:19:54.15:0,54,654 0/0:19,0:19:45.14:0,45,576 0/0:19,0:19:45.14:0,45,588 0/0:26,0:26:72.21:0,72,874 0/0:24,0:24:63.18:0,63,778 0/0:36,0:36:87.27:0,87,1102 0/0:29,0:29:75.21:0,75,906 0/0:17,0:17:45.13:0,45,545 0/0:26,0:26:72.20:0,72,891 0/0:18,0:18:42.12:0,42,519 0/0:39,0:39:99:0,102,1240 0/0:20,0:20:51.14:0,51,630 0/0:19,0:19:54.14:0,54,651 0/0:17,0:17:51.16:0,51,628 0/0:23,0:23:54.14:0,54,684 0/0:28,0:28:69.21:0,69,862 19 5696744 . G A 826.90 . 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G A 710.12 . 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C T 3206.43 . 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C T 807.41 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.656;DP=2845;Dels=0.00;FS=11.039;HRun=0;HaplotypeScore=1.6744;InbreedingCoeff=-0.0244;MQ=59.24;MQ0=0;MQRankSum=0.767;QD=9.61;ReadPosRankSum=-1.134 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,120,1474 0/0:49,0:49:99:0,129,1630 0/0:45,0:45:99:0,117,1492 0/0:99,0:99:99:0,253,3424 0/0:122,0:122:99:0,322,4338 0/0:80,0:80:99:0,202,2770 0/0:72,0:72:99:0,190,2588 0/0:70,0:70:99:0,193,2600 0/0:49,0:49:99:0,135,1698 0/0:40,0:40:99:0,108,1358 0/0:47,0:47:99:0,129,1638 0/0:40,0:40:99:0,120,1464 0/0:41,0:41:99:0,114,1430 0/0:55,0:55:99:0,156,1971 0/0:193,0:193:99:0,490,6229 0/0:60,0:60:99:0,175,2151 0/0:45,0:45:99:0,120,1510 0/0:55,0:55:99:0,153,1891 0/0:121,0:121:99:0,289,3681 0/0:142,0:142:99:0,370,4734 0/0:105,0:106:99:0,274,3469 0/0:72,0:73:99:0,208,2569 0/0:108,0:108:99:0,301,4068 0/0:43,0:43:99:0,114,1569 0/0:66,0:66:99:0,172,2335 0/0:64,0:64:99:0,175,2339 0/0:40,0:40:99:0,102,1288 0/0:58,0:58:99:0,153,1901 0/0:56,0:56:99:0,150,1845 0/0:58,0:58:99:0,153,1943 0/0:43,0:43:99:0,117,1482 0/0:112,0:112:99:0,298,3754 0/0:60,0:60:99:0,159,2021 0/0:47,0:47:99:0,132,1644 0/0:45,0:46:99:0,126,1565 0/0:54,0:54:99:0,147,1858 0/0:105,0:105:99:0,271,3344 0/1:33,22:55:99:550,0,928 0/0:53,0:53:99:0,141,1777 0/0:55,0:55:99:0,153,1915 0/0:48,0:48:99:0,123,1569 0/1:16,13:29:99:319,0,511 19 6042059 . C T 15548.79 . AC=15;AF=0.179;AN=84;BaseQRankSum=-22.769;DP=4188;DS;Dels=0.00;FS=29.268;HRun=1;HaplotypeScore=4.1807;InbreedingCoeff=0.1072;MQ=59.19;MQ0=0;MQRankSum=-1.703;QD=15.20;ReadPosRankSum=1.925 GT:AD:DP:GQ:PL 0/0:69,0:69:99:0,190,2349 0/0:69,0:69:99:0,178,2213 0/0:47,0:47:99:0,126,1589 0/0:239,0:240:99:0,638,8392 0/0:248,0:248:99:0,677,9050 0/0:157,0:157:99:0,415,5497 0/0:136,0:136:99:0,346,4608 0/0:139,1:140:99:0,311,4412 0/0:83,0:83:99:0,232,2912 0/0:62,0:62:99:0,178,2200 0/0:75,1:76:99:0,162,2436 0/0:71,0:71:99:0,202,2488 0/0:49,0:49:99:0,132,1656 0/0:66,0:66:99:0,193,2356 0/0:235,1:236:99:0,635,8022 0/0:73,0:73:99:0,193,2417 0/0:65,1:66:99:0,169,2143 0/1:26,26:52:99:668,0,731 0/1:57,62:119:99:1800,0,1490 0/1:72,66:138:99:1778,0,2028 0/0:126,0:127:99:0,325,4070 0/1:37,41:78:99:1110,0,1038 0/0:244,0:244:99:0,659,8784 0/0:130,0:131:99:0,328,4384 0/0:137,0:137:99:0,355,4743 0/0:113,0:115:99:0,319,4174 0/0:51,0:51:99:0,141,1750 0/1:39,30:69:99:722,0,1213 0/0:64,0:64:99:0,175,2207 0/1:33,39:74:99:978,0,959 0/0:51,0:51:99:0,147,1800 0/0:138,0:139:99:0,367,4684 1/1:1,73:75:99:2203,153,0 0/1:36,28:64:99:781,0,1090 1/1:1,55:57:99:1836,128,0 0/0:74,0:75:99:0,208,2654 0/1:66,48:114:99:1215,0,1899 0/1:35,34:69:99:952,0,957 0/0:66,0:67:99:0,193,2375 0/1:32,31:63:99:910,0,950 0/1:29,22:51:99:597,0,860 0/0:76,0:76:99:0,211,2614 19 6042092 . C T 804.35 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.667;DP=3881;DS;Dels=0.00;FS=1.478;HRun=0;HaplotypeScore=3.2603;InbreedingCoeff=-0.0120;MQ=59.11;MQ0=0;MQRankSum=0.849;QD=13.19;ReadPosRankSum=0.375 GT:AD:DP:GQ:PL 0/0:78,0:78:99:0,211,2370 0/0:70,0:70:99:0,201,2226 0/0:46,0:46:99:0,126,1458 0/0:189,0:189:99:0,532,6280 0/0:208,0:208:99:0,569,6885 0/0:138,0:138:99:0,370,4487 0/0:93,0:93:99:0,256,3045 0/0:125,0:125:99:0,337,4072 0/0:80,0:80:99:0,223,2522 0/1:31,30:61:99:851,0,730 0/0:73,0:73:99:0,196,2248 0/0:67,0:67:99:0,168,1955 0/0:56,0:56:99:0,144,1625 0/0:67,0:67:99:0,189,2118 0/0:224,0:224:99:0,593,6770 0/0:67,0:67:99:0,171,1985 0/0:62,0:62:99:0,171,1930 0/0:40,0:40:99:0,105,1204 0/0:124,0:124:99:0,328,3727 0/0:147,0:147:99:0,379,4430 0/0:125,0:125:99:0,334,3809 0/0:88,0:88:99:0,256,2885 0/0:150,0:150:99:0,412,4934 0/0:98,0:98:99:0,262,3121 0/0:120,0:120:99:0,325,3937 0/0:105,0:106:99:0,286,3385 0/0:53,0:53:99:0,147,1666 0/0:68,0:68:99:0,177,2066 0/0:66,0:66:99:0,183,2118 0/0:69,0:69:99:0,196,2207 0/0:62,0:62:99:0,168,1896 0/0:145,0:145:99:0,376,4413 0/0:73,0:73:99:0,196,2249 0/0:64,0:64:99:0,174,1979 0/0:52,1:53:99:0,135,1610 0/0:75,0:75:99:0,205,2339 0/0:107,0:107:99:0,280,3248 0/0:64,0:64:99:0,183,2085 0/0:60,0:60:99:0,171,1977 0/0:76,1:77:99:0,177,2345 0/0:67,0:67:99:0,180,2069 0/0:76,0:76:99:0,214,2406 19 6044219 . C T 85.77 . AC=2;AF=0.024;AN=82;BaseQRankSum=-3.272;DP=371;Dels=0.00;FS=3.677;HRun=1;HaplotypeScore=0.4813;InbreedingCoeff=-0.0473;MQ=58.75;MQ0=0;MQRankSum=0.258;QD=6.60;ReadPosRankSum=-1.360 GT:AD:DP:GQ:PL 0/0:13,0:13:39.12:0,39,480 0/0:7,0:7:21.05:0,21,248 0/0:6,0:6:15.05:0,15,190 0/0:17,0:17:48.16:0,48,637 0/0:15,0:15:36.11:0,36,489 0/0:14,0:14:36.11:0,36,465 0/0:10,0:10:30.10:0,30,386 0/0:3,2:5:9.03:0,9,120 0/0:5,0:5:15.04:0,15,184 0/0:10,0:10:27.09:0,27,348 0/0:5,0:5:12.01:0,12,133 0/1:2,2:4:35.72:36,0,69 0/0:4,0:4:9.03:0,9,121 0/1:5,4:9:99:111,0,163 0/0:24,0:24:66.19:0,66,817 0/0:9,0:9:24.07:0,24,306 0/0:12,0:12:33.11:0,33,424 ./. 0/0:15,0:15:42.13:0,42,523 0/0:13,0:13:33.10:0,33,418 0/0:8,0:8:21.07:0,21,270 0/0:8,1:9:0.91:6,0,276 0/0:17,0:17:48.16:0,48,649 0/0:10,0:10:27.07:0,27,353 0/0:11,0:11:24.08:0,24,321 0/0:9,0:9:21.06:0,21,273 0/0:7,0:7:21.05:0,21,252 0/0:3,0:3:9.03:0,9,105 0/0:7,0:7:18.06:0,18,230 0/0:2,0:2:6.02:0,6,74 0/0:5,0:5:15.04:0,15,177 0/0:15,0:15:42.13:0,42,532 0/0:6,0:6:18.06:0,18,226 0/0:6,0:6:18.04:0,18,206 0/0:7,0:7:18.06:0,18,228 0/0:9,0:9:24.08:0,24,307 0/0:8,0:8:21.06:0,21,267 0/0:9,0:9:24.08:0,24,310 0/0:7,0:7:21.06:0,21,261 0/0:7,0:7:18.06:0,18,233 0/0:8,0:8:24.08:0,24,299 0/0:4,0:4:12.04:0,12,155 19 6044222 . A T 117.18 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.060;DP=377;Dels=0.00;FS=5.844;HRun=0;HaplotypeScore=0.4903;InbreedingCoeff=-0.0407;MQ=58.67;MQ0=0;MQRankSum=-0.862;QD=8.37;ReadPosRankSum=-1.731 GT:AD:DP:GQ:PL 0/0:14,0:14:36.10:0,36,431 0/0:8,0:8:21.06:0,21,260 0/0:6,0:6:15.05:0,15,185 0/0:20,0:20:48.15:0,48,602 0/0:15,0:15:36.11:0,36,458 0/0:13,0:13:33.10:0,33,413 0/0:10,0:10:21.06:0,21,251 0/0:3,1:4:9.03:0,9,110 0/0:4,0:5:12.04:0,12,142 0/0:10,0:10:27.08:0,27,336 0/0:6,0:6:15.01:0,15,156 0/1:2,2:4:35.73:36,0,65 0/0:4,0:4:9.03:0,9,116 0/1:5,5:10:99:143,0,148 0/0:25,0:25:69.17:0,69,799 0/0:8,0:8:21.07:0,21,261 0/0:12,0:12:33.10:0,33,414 0/0:1,0:1:3.01:0,3,36 0/0:15,0:15:42.13:0,42,509 0/0:17,0:17:36.11:0,36,459 0/0:7,0:8:15.05:0,15,193 0/0:9,0:9:24.07:0,24,290 0/0:17,0:17:48.15:0,48,607 0/0:10,0:10:24.07:0,24,298 0/0:10,0:10:24.08:0,24,305 0/0:9,0:9:21.07:0,21,260 0/0:6,0:6:18.06:0,18,218 0/0:3,0:3:9.02:0,9,102 0/0:7,0:7:18.03:0,18,213 0/0:2,0:2:6.02:0,6,72 0/0:5,0:5:15.05:0,15,183 0/0:16,0:16:42.13:0,42,535 0/0:6,0:6:18.05:0,18,203 0/0:6,0:6:18.04:0,18,201 0/0:7,0:7:18.06:0,18,218 0/0:8,0:8:24.07:0,24,291 0/0:7,0:8:18.06:0,18,229 0/0:8,0:8:21.07:0,21,261 0/0:8,0:8:24.06:0,24,277 0/0:6,0:6:18.05:0,18,215 0/0:6,0:7:18.05:0,18,211 0/0:4,0:4:12.04:0,12,150 19 6333476 . G A 1012.56 . AC=10;AF=0.119;AN=84;BaseQRankSum=-6.881;DP=424;Dels=0.00;FS=0.605;HRun=0;HaplotypeScore=0.2485;InbreedingCoeff=-0.1335;MQ=59.15;MQ0=0;MQRankSum=1.046;QD=9.83;ReadPosRankSum=0.161 GT:AD:DP:GQ:PL 0/0:12,0:12:30.09:0,30,374 0/0:7,0:7:18.05:0,18,224 0/0:10,0:10:27.09:0,27,352 0/0:15,0:15:33.11:0,33,463 0/0:7,0:7:18.06:0,18,236 0/0:8,0:8:21.07:0,21,283 0/0:8,0:8:21.06:0,21,275 0/0:5,0:5:15.04:0,15,182 0/0:5,0:5:9.02:0,9,112 0/1:1,6:7:12.37:187,0,12 0/1:5,4:9:99:99,0,143 0/0:9,0:9:27.09:0,27,338 0/1:8,6:14:99:158,0,146 0/0:15,0:15:39.13:0,39,500 0/0:33,0:33:90.28:0,90,1143 0/0:14,0:14:42.13:0,42,519 0/0:10,0:10:27.09:0,27,342 0/0:8,0:8:21.07:0,21,278 0/1:6,7:13:99:183,0,152 0/1:10,5:15:92.55:93,0,280 0/0:21,0:21:51.16:0,51,671 0/1:10,2:12:7.30:7,0,269 0/0:13,0:13:36.10:0,36,467 0/0:3,0:3:9.03:0,9,117 0/0:4,0:4:12.04:0,12,167 0/0:2,0:2:6.02:0,6,82 0/0:3,0:3:9.03:0,9,115 0/0:15,0:15:39.12:0,39,503 0/0:5,0:5:15.05:0,15,189 0/0:12,0:12:24.08:0,24,320 0/0:10,0:10:24.08:0,24,321 0/0:9,0:9:21.07:0,21,281 0/1:4,4:8:99:114,0,126 0/0:8,1:9:24.07:0,24,284 0/0:10,0:10:27.08:0,27,336 0/0:12,0:12:33.10:0,33,403 0/0:7,0:7:18.06:0,18,234 0/1:6,4:10:86.37:86,0,179 0/0:10,0:10:24.08:0,24,318 0/1:3,5:8:90.56:128,0,91 0/1:4,3:7:88.11:88,0,128 0/0:10,0:10:27.09:0,27,346 19 6333533 . G A 188.27 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.544;DP=381;Dels=0.00;FS=1.596;HRun=0;HaplotypeScore=0.1781;InbreedingCoeff=-0.0236;MQ=59.38;MQ0=0;MQRankSum=-0.593;QD=18.83;ReadPosRankSum=-0.314 GT:AD:DP:GQ:PL 0/0:9,0:9:21.06:0,21,259 0/0:6,0:6:18.05:0,18,201 0/0:7,0:7:21.07:0,21,268 0/0:8,0:8:24.07:0,24,293 0/0:8,0:8:24.07:0,24,304 0/0:3,0:3:9.02:0,9,104 0/0:6,0:6:18.05:0,18,229 0/0:11,0:11:27.05:0,27,331 0/0:6,0:6:18.05:0,18,215 0/0:7,0:7:21.06:0,21,240 0/0:11,0:11:30.09:0,30,363 0/0:10,0:10:30.09:0,30,360 0/0:6,0:6:18.05:0,18,213 0/0:10,0:10:24.06:0,24,281 0/0:34,0:34:93.27:0,93,1118 0/0:8,0:8:21.07:0,21,262 0/0:3,0:3:6.02:0,6,77 0/0:12,0:12:33.10:0,33,405 0/0:11,0:11:30.09:0,30,366 0/0:14,0:14:36.11:0,36,446 0/0:20,0:20:48.13:0,48,573 0/0:7,0:7:18.06:0,18,234 0/0:15,0:15:42.14:0,42,550 0/0:6,0:6:15.05:0,15,196 0/0:5,0:5:15.05:0,15,194 0/0:2,0:2:6.02:0,6,72 0/0:3,0:3:9.03:0,9,111 0/0:7,0:7:18.06:0,18,226 0/0:9,0:9:27.07:0,27,306 0/0:16,0:16:42.12:0,42,517 0/0:8,0:8:24.07:0,24,292 0/0:8,0:8:24.07:0,24,287 0/0:11,0:11:30.09:0,30,379 0/0:4,0:4:12.04:0,12,147 0/0:8,0:8:21.05:0,21,244 0/0:11,0:11:27.08:0,27,334 0/0:8,0:8:24.07:0,24,295 0/0:7,0:7:21.06:0,21,241 0/0:10,0:10:30.08:0,30,347 0/0:9,0:9:24.07:0,24,293 0/0:7,0:7:18.05:0,18,218 0/1:3,7:10:83.99:234,0,84 19 6374890 . G A 7040.20 . AC=8;AF=0.095;AN=84;BaseQRankSum=2.959;DP=2600;Dels=0.00;FS=4.440;HRun=0;HaplotypeScore=2.5312;InbreedingCoeff=-0.1053;MQ=59.29;MQ0=1;MQRankSum=0.652;QD=12.73;ReadPosRankSum=0.460 GT:AD:DP:GQ:PL 0/1:22,28:50:99:864,0,615 0/1:17,22:39:99:621,0,389 0/0:46,0:46:99:0,129,1495 0/1:83,51:134:99:1443,0,2493 0/0:134,0:134:99:0,373,4600 0/0:92,0:92:99:0,262,3218 0/0:66,1:68:99:0,184,2269 0/0:80,0:81:99:0,220,2746 0/0:37,0:37:99:0,102,1242 0/0:35,0:35:96.27:0,96,1160 0/0:29,0:29:81.23:0,81,952 0/0:48,0:48:99:0,126,1463 0/0:27,0:27:72.19:0,72,855 0/0:50,2:52:90.68:0,91,1509 0/0:140,0:141:99:0,352,4178 0/0:43,0:43:99:0,114,1339 0/0:44,0:44:99:0,123,1466 0/0:36,0:36:99:0,105,1206 0/0:71,0:71:99:0,202,2419 0/0:93,0:95:99:0,259,3052 0/0:97,0:97:99:0,262,3127 0/0:53,0:53:99:0,153,1742 0/1:82,71:153:99:1906,0,2326 0/0:87,0:87:99:0,241,3042 0/0:101,0:101:99:0,274,3450 0/1:40,26:66:99:605,0,1251 0/0:29,0:29:78.22:0,78,951 0/0:43,0:43:99:0,120,1429 0/0:34,0:34:99:0,99,1177 0/0:43,0:43:99:0,120,1436 0/1:14,23:38:99:699,0,373 0/0:72,0:73:99:0,208,2452 0/0:49,0:49:99:0,138,1636 0/0:41,0:41:99:0,120,1406 0/1:13,19:32:99:520,0,314 0/1:27,14:41:99:381,0,723 0/0:79,0:81:99:0,217,2587 0/0:47,0:47:99:0,132,1528 0/0:42,0:42:99:0,120,1365 0/0:61,0:62:99:0,171,2048 0/0:43,0:43:99:0,126,1504 0/0:43,0:43:99:0,126,1515 19 6380936 . C G 28.74 . AC=4;AF=0.048;AN=84;BaseQRankSum=-4.141;DP=264;Dels=0.00;FS=25.657;HRun=1;HaplotypeScore=0.1608;InbreedingCoeff=-0.1086;MQ=57.26;MQ0=0;MQRankSum=2.345;QD=0.96;ReadPosRankSum=-3.238 GT:AD:DP:GQ:PL 0/0:2,1:3:3.01:0,3,33 0/0:7,1:8:18.03:0,18,210 0/1:4,2:6:15.65:16,0,90 0/0:3,1:4:9.03:0,9,112 0/0:11,2:13:24.05:0,24,282 0/0:3,0:3:3.01:0,3,40 0/0:6,0:6:12.04:0,12,162 0/0:4,1:5:6.02:0,6,87 0/0:4,3:7:12.04:0,12,151 0/0:2,1:4:5.99:0,6,61 0/0:2,0:2:6.01:0,6,60 0/0:5,2:7:9.03:0,9,110 0/0:3,1:4:6.02:0,6,71 0/0:4,1:5:9.03:0,9,106 0/0:13,5:18:33.02:0,33,359 0/0:4,0:4:2.99:0,3,24 0/0:4,1:5:12.04:0,12,151 0/0:6,2:8:15.02:0,15,168 0/1:4,2:6:12.67:13,0,88 0/0:11,0:11:30.05:0,30,332 0/0:5,1:6:9.03:0,9,104 0/0:6,0:6:12.02:0,12,139 0/0:7,2:9:18.04:0,18,210 0/0:4,0:4:3.01:0,3,42 0/0:5,1:6:15.02:0,15,171 0/0:7,0:7:12.02:0,12,144 0/0:8,1:9:24.03:0,24,276 0/0:5,1:6:15.02:0,15,168 0/0:4,1:5:12.01:0,12,133 0/0:4,1:5:12.04:0,12,152 0/0:6,1:7:5.99:0,6,51 0/0:10,1:12:21.06:0,21,252 0/1:7,2:9:32.30:32,0,141 0/0:5,1:6:15.03:0,15,169 0/0:3,0:3:5.98:0,6,46 0/0:6,1:7:12.01:0,12,123 0/1:5,4:9:48.82:49,0,123 0/0:4,0:4:9.03:0,9,109 0/0:2,1:3:6.02:0,6,69 0/0:4,0:4:9.03:0,9,113 0/0:2,0:2:6.01:0,6,60 0/0:4,2:6:9.03:0,9,109 19 6387558 . G T 358.84 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.935;DP=1483;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=1.1169;InbreedingCoeff=-0.0121;MQ=58.72;MQ0=0;MQRankSum=-0.094;QD=15.60;ReadPosRankSum=-0.565 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,132,1640 0/0:28,0:28:75.22:0,75,948 0/0:14,0:14:36.12:0,36,469 0/0:59,0:59:99:0,163,2139 0/0:40,0:40:99:0,117,1564 0/0:36,0:36:99:0,108,1452 0/0:46,0:46:99:0,120,1632 0/0:39,0:39:99:0,105,1431 0/0:23,0:23:63.20:0,63,797 0/0:21,0:21:57.17:0,57,697 0/1:8,15:23:99:405,0,244 0/0:38,0:38:96.29:0,96,1192 0/0:31,0:31:87.27:0,87,1095 0/0:23,0:23:63.20:0,63,808 0/0:96,0:96:99:0,244,3131 0/0:41,1:42:79.11:0,79,1392 0/0:30,0:30:87.28:0,87,1099 0/0:18,0:18:51.16:0,51,648 0/0:41,2:43:99:0,114,1404 0/0:34,0:34:96.28:0,96,1198 0/0:40,0:40:99:0,105,1312 0/0:33,0:33:93.29:0,93,1171 0/0:72,0:73:99:0,199,2642 0/0:32,0:32:93.29:0,93,1223 0/0:37,0:37:99:0,105,1359 0/0:29,0:29:78.23:0,78,1047 0/0:26,0:26:72.22:0,72,906 0/0:34,0:34:90.28:0,90,1123 0/0:22,0:22:63.20:0,63,809 0/0:28,0:28:75.23:0,75,952 0/0:22,0:22:60.18:0,60,751 0/0:66,0:66:99:0,166,2103 0/0:37,1:38:96.31:0,96,1242 0/0:24,0:24:66.21:0,66,830 0/0:36,0:36:99:0,102,1288 0/0:32,0:32:90.26:0,90,1117 0/0:42,1:43:99:0,117,1477 0/0:24,0:24:69.21:0,69,869 0/0:24,0:24:66.21:0,66,826 0/0:34,0:34:99:0,99,1205 0/0:31,0:31:87.27:0,87,1092 0/0:21,0:21:63.19:0,63,782 19 6427364 . G C 645.72 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.539;DP=916;Dels=0.00;FS=3.970;HRun=0;HaplotypeScore=0.7073;InbreedingCoeff=-0.0245;MQ=59.05;MQ0=1;MQRankSum=2.065;QD=14.04;ReadPosRankSum=-1.440 GT:AD:DP:GQ:PL 0/0:21,0:21:63.19:0,63,768 0/0:21,0:21:57.18:0,57,715 0/0:14,0:14:42.12:0,42,502 0/0:41,0:41:96.31:0,96,1270 0/0:38,0:38:99:0,102,1331 0/0:21,0:21:57.18:0,57,752 0/0:18,0:18:51.11:0,51,633 0/0:26,0:26:60.19:0,60,810 0/0:19,0:19:48.13:0,48,559 0/0:16,0:16:42.11:0,42,502 0/0:21,0:21:63.16:0,63,742 0/1:11,10:21:99:315,0,284 0/0:15,0:16:39.11:0,39,475 0/1:12,13:25:99:393,0,383 0/0:64,0:64:99:0,159,1967 0/0:15,0:15:45.14:0,45,558 0/0:16,0:16:45.13:0,45,547 0/0:16,0:16:45.12:0,45,536 0/0:28,0:28:66.17:0,66,777 0/0:40,0:41:99:0,108,1324 0/0:30,0:30:75.23:0,75,923 0/0:26,0:26:66.17:0,66,817 0/0:32,0:33:87.27:0,87,1140 0/0:21,0:21:60.16:0,60,766 0/0:23,0:24:57.18:0,57,750 0/0:14,0:14:27.07:0,27,361 0/0:11,0:11:33.07:0,33,377 0/0:21,0:21:60.17:0,60,734 0/0:9,0:9:24.07:0,24,298 0/0:19,0:19:45.12:0,45,536 0/0:14,0:14:39.10:0,39,472 0/0:23,0:23:60.19:0,60,754 0/0:20,0:20:51.16:0,51,639 0/0:13,0:13:39.12:0,39,476 0/0:16,0:17:42.10:0,42,509 0/0:26,0:26:69.21:0,69,854 0/0:24,1:25:60.14:0,60,703 0/0:18,0:18:42.11:0,42,505 0/0:16,0:16:48.14:0,48,587 0/0:13,0:13:36.08:0,36,428 0/0:12,0:12:27.08:0,27,348 0/0:13,0:13:36.08:0,36,420 19 6427408 . G A 1678.73 . AC=7;AF=0.083;AN=84;BaseQRankSum=-1.328;DP=728;Dels=0.00;FS=1.067;HRun=0;HaplotypeScore=0.7717;InbreedingCoeff=-0.0915;MQ=58.57;MQ0=0;MQRankSum=1.840;QD=12.08;ReadPosRankSum=1.991 GT:AD:DP:GQ:PL 0/1:10,5:15:99:133,0,307 0/1:11,6:17:99:165,0,328 0/0:8,0:8:24.05:0,24,274 0/1:20,10:30:99:252,0,604 0/0:28,0:28:69.21:0,69,902 0/0:17,0:17:42.13:0,42,539 0/0:20,0:20:51.14:0,51,644 0/0:17,0:17:45.15:0,45,605 0/0:18,0:18:51.13:0,51,586 0/0:14,0:14:42.10:0,42,460 0/0:17,0:17:51.13:0,51,576 0/0:12,0:12:27.06:0,27,308 0/0:9,0:9:27.05:0,27,303 0/1:9,9:18:99:259,0,273 0/0:56,0:56:99:0,141,1715 0/0:17,0:17:48.10:0,48,541 0/0:7,0:7:21.05:0,21,229 0/0:9,0:9:27.08:0,27,317 0/0:20,0:20:57.13:0,57,661 0/0:24,0:24:69.20:0,69,844 0/0:20,0:20:57.17:0,57,693 0/0:19,0:19:51.14:0,51,593 0/1:11,18:29:99:527,0,322 0/0:14,0:14:36.10:0,36,455 0/0:26,0:26:75.23:0,75,966 0/1:8,6:14:99:182,0,231 0/0:10,0:10:27.07:0,27,328 0/0:14,0:15:36.10:0,36,426 0/0:9,0:9:27.08:0,27,332 0/0:13,0:13:33.09:0,33,400 0/0:10,0:10:30.09:0,30,348 0/0:15,0:15:42.11:0,42,479 0/0:13,0:13:30.08:0,30,348 0/0:8,0:8:24.07:0,24,280 0/0:13,0:13:33.10:0,33,403 0/1:7,9:16:99:274,0,163 0/0:32,0:33:78.20:0,78,902 0/0:20,0:20:57.16:0,57,649 0/0:17,0:17:48.14:0,48,573 0/0:6,0:6:18.05:0,18,212 0/0:14,0:14:36.09:0,36,420 0/0:21,0:21:63.12:0,63,696 19 6427496 . A C 374.42 . AC=2;AF=0.024;AN=84;BaseQRankSum=5.118;DP=531;Dels=0.00;FS=4.334;HRun=1;HaplotypeScore=0.4301;InbreedingCoeff=-0.0295;MQ=58.90;MQ0=0;MQRankSum=-0.241;QD=16.28;ReadPosRankSum=-0.406 GT:AD:DP:GQ:PL 0/0:13,0:13:33.10:0,33,406 0/0:11,0:11:33.10:0,33,394 0/0:6,0:6:18.05:0,18,214 0/0:14,0:14:39.12:0,39,479 0/0:16,0:16:39.12:0,39,497 0/0:8,0:8:24.08:0,24,308 0/0:6,0:6:15.05:0,15,185 0/0:13,0:13:33.10:0,33,414 0/0:5,0:5:15.04:0,15,169 0/0:11,0:11:30.09:0,30,359 0/0:12,0:12:30.09:0,30,357 0/0:10,0:10:30.09:0,30,345 0/0:10,0:10:24.07:0,24,282 0/0:11,0:11:30.09:0,30,369 0/0:52,0:52:99:0,129,1552 0/0:16,0:16:48.13:0,48,560 0/0:10,0:10:24.07:0,24,296 0/0:7,0:7:21.06:0,21,252 0/0:22,0:22:54.17:0,54,670 0/0:17,0:17:42.12:0,42,502 0/0:15,0:15:39.12:0,39,485 0/0:21,0:21:57.15:0,57,660 0/0:13,0:13:36.11:0,36,438 0/0:10,0:10:24.07:0,24,304 0/0:5,0:5:15.04:0,15,170 0/0:2,0:2:6.02:0,6,73 0/0:4,0:4:12.04:0,12,144 0/0:9,0:9:27.08:0,27,315 0/0:13,0:13:30.09:0,30,364 0/0:8,0:8:24.03:0,24,250 0/0:11,1:12:33.10:0,33,384 0/0:24,0:24:54.17:0,54,690 0/0:9,0:9:27.08:0,27,314 0/0:15,0:15:39.11:0,39,459 0/0:17,0:17:45.13:0,45,528 0/0:13,0:13:30.07:0,30,348 0/1:6,7:13:99:226,0,145 0/1:3,7:10:49.33:210,0,49 0/0:16,0:16:42.12:0,42,490 0/0:12,0:12:36.10:0,36,420 0/0:10,0:10:24.07:0,24,287 0/0:10,0:10:30.09:0,30,364 19 6429797 . C G 674.53 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.128;DP=1541;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9025;InbreedingCoeff=-0.0244;MQ=59.28;MQ0=0;MQRankSum=0.916;QD=17.30;ReadPosRankSum=-0.858 GT:AD:DP:GQ:PL 0/0:30,0:30:78.25:0,78,1017 0/0:21,0:21:54.17:0,54,675 0/0:15,0:15:39.12:0,39,492 0/0:104,0:104:99:0,274,3631 0/0:67,0:67:99:0,172,2289 0/0:67,0:67:99:0,175,2318 0/0:41,0:41:99:0,111,1515 0/0:55,0:55:99:0,144,1904 0/0:24,0:24:66.21:0,66,848 0/0:21,0:21:63.20:0,63,790 0/0:23,0:23:57.16:0,57,701 0/0:17,0:17:48.15:0,48,616 0/0:27,0:27:66.19:0,66,822 0/0:22,0:22:60.18:0,60,735 0/0:101,0:101:99:0,244,3148 0/0:33,0:33:87.28:0,87,1128 0/0:21,0:21:51.17:0,51,670 0/0:30,0:30:78.24:0,78,996 0/0:39,0:39:96.29:0,96,1196 0/0:57,0:58:99:0,150,1880 0/0:56,0:56:99:0,153,1826 0/0:14,0:14:42.10:0,42,515 0/0:99,0:100:99:0,259,3386 0/0:60,0:60:99:0,150,2029 0/0:61,0:61:99:0,153,2070 0/0:53,0:53:99:0,141,1892 0/0:21,0:21:57.17:0,57,732 0/0:17,0:17:48.15:0,48,607 0/0:23,0:23:63.18:0,63,805 0/0:29,0:29:84.27:0,84,1066 0/0:24,0:24:69.21:0,69,857 0/0:37,0:37:93.29:0,93,1202 0/0:34,0:34:87.28:0,87,1126 0/0:18,0:18:48.15:0,48,600 0/0:14,0:14:39.12:0,39,478 0/0:18,0:18:54.17:0,54,685 0/0:41,0:42:99:0,105,1295 0/0:24,0:24:63.20:0,63,784 0/0:24,0:24:63.18:0,63,801 0/1:8,11:19:99:337,0,235 0/0:17,0:17:51.16:0,51,635 0/1:8,12:20:99:400,0,195 19 6432112 . G A 1343.23 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.086;DP=1569;Dels=0.00;FS=11.987;HRun=0;HaplotypeScore=1.0995;InbreedingCoeff=-0.0370;MQ=58.75;MQ0=0;MQRankSum=-0.771;QD=9.46;ReadPosRankSum=-0.394 GT:AD:DP:GQ:PL 0/0:24,0:24:63.17:0,63,710 0/0:30,0:30:84.23:0,84,941 0/0:27,0:27:75.19:0,75,844 0/0:70,0:71:99:0,174,2105 0/0:59,1:60:99:0,123,1811 0/0:45,0:45:99:0,111,1379 0/0:43,0:43:99:0,108,1297 0/0:47,0:47:99:0,114,1400 0/0:34,1:36:64:0,64,1022 0/1:10,13:23:99:346,0,270 0/0:34,0:34:99:0,99,1107 0/0:27,0:27:78.21:0,78,875 0/0:27,0:27:81.19:0,81,875 0/0:19,0:20:57.12:0,57,609 0/0:91,0:91:99:0,241,2695 0/0:31,0:31:81.16:0,81,878 0/0:34,0:34:84.23:0,84,963 0/0:22,0:22:60.15:0,60,660 0/1:31,19:54:99:478,0,741 0/1:38,24:65:99:595,0,1051 0/0:57,0:58:99:0,153,1709 0/0:35,0:37:96.23:0,96,1073 0/0:66,0:66:99:0,180,2172 0/0:40,0:40:99:0,105,1270 0/0:46,0:46:99:0,129,1602 0/0:36,0:36:96.28:0,96,1170 0/0:22,0:23:57.16:0,57,667 0/0:27,0:27:69.19:0,69,789 0/0:26,0:26:69.17:0,69,775 0/0:22,0:22:63.16:0,63,712 0/0:23,0:23:63.18:0,63,737 0/0:63,0:64:99:0,159,1819 0/0:32,0:32:84.22:0,84,962 0/0:28,0:28:75.20:0,75,850 0/0:25,0:26:60.13:0,60,663 0/0:22,0:22:63.14:0,63,692 0/0:55,0:58:99:0,138,1511 0/0:23,0:23:63.16:0,63,711 0/0:26,0:27:75.20:0,75,852 0/0:29,0:29:84.22:0,84,952 0/0:16,1:17:48.13:0,48,540 0/0:27,0:28:78.18:0,78,884 19 6432183 . G A 420.85 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.970;DP=1959;Dels=0.00;FS=3.539;HRun=0;HaplotypeScore=1.4890;InbreedingCoeff=-0.0121;MQ=59.17;MQ0=0;MQRankSum=0.879;QD=15.59;ReadPosRankSum=-0.570 GT:AD:DP:GQ:PL 0/1:12,15:27:99:467,0,320 0/0:42,0:42:99:0,111,1318 0/0:27,0:27:78.22:0,78,912 0/0:91,0:91:99:0,229,2876 0/0:63,0:63:99:0,168,2073 0/0:53,0:53:99:0,129,1668 0/0:47,0:47:99:0,123,1548 0/0:67,0:67:99:0,156,2059 0/0:48,0:48:99:0,132,1588 0/0:37,0:37:87.26:0,87,1086 0/0:33,0:33:87.25:0,87,1054 0/0:27,0:27:78.22:0,78,906 0/0:27,0:27:69.20:0,69,812 0/0:27,0:27:72.21:0,72,878 0/0:121,0:121:99:0,286,3515 0/0:28,0:28:78.22:0,78,908 0/0:42,0:42:99:0,114,1355 0/0:37,0:37:99:0,102,1199 0/0:68,0:68:99:0,165,1931 0/0:84,0:84:99:0,211,2592 0/0:79,0:79:99:0,180,2200 0/0:46,0:46:99:0,123,1459 0/0:82,0:82:99:0,211,2652 0/0:47,0:47:99:0,117,1479 0/0:44,0:45:99:0,114,1440 0/0:41,0:41:99:0,99,1261 0/0:20,0:20:42.11:0,42,506 0/0:46,0:46:99:0,120,1434 0/0:32,0:32:84.23:0,84,996 0/0:31,0:31:87.24:0,87,1011 0/0:25,0:25:72.20:0,72,837 0/0:90,0:90:99:0,211,2601 0/0:42,0:42:99:0,111,1299 0/0:36,0:36:90.24:0,90,1108 0/0:33,0:33:78.23:0,78,973 0/0:29,0:29:87.24:0,87,997 0/0:79,0:79:99:0,202,2369 0/0:34,0:34:96.26:0,96,1103 0/0:38,0:38:99:0,108,1295 0/0:34,0:34:96.24:0,96,1097 0/0:16,0:16:39.12:0,39,478 0/0:38,0:38:99:0,102,1208 19 6458240 . G C 4092.78 . AC=11;AF=0.131;AN=84;BaseQRankSum=-2.533;DP=1337;Dels=0.00;FS=26.691;HRun=0;HaplotypeScore=0.9818;InbreedingCoeff=-0.1507;MQ=59.22;MQ0=0;MQRankSum=-0.534;QD=11.03;ReadPosRankSum=-0.057 GT:AD:DP:GQ:PL 0/0:23,0:23:66.20:0,66,818 0/1:13,6:19:99:161,0,404 0/1:20,8:28:99:177,0,561 0/0:65,0:65:99:0,181,2360 0/0:67,0:67:99:0,184,2364 0/0:40,0:40:99:0,105,1357 0/0:40,0:40:99:0,99,1314 0/0:25,0:25:69.22:0,69,905 0/0:27,0:27:75.23:0,75,944 0/1:18,7:25:99:197,0,574 0/0:22,0:23:66.19:0,66,797 0/0:23,0:23:66.20:0,66,815 0/0:16,0:16:48.15:0,48,592 0/0:27,0:29:75.23:0,75,944 0/1:47,30:77:99:779,0,1357 0/1:17,8:26:99:203,0,462 0/0:22,0:22:57.18:0,57,733 0/0:23,0:23:63.20:0,63,809 0/1:14,19:33:99:524,0,367 0/1:26,16:43:99:434,0,777 0/0:44,0:44:99:0,123,1550 0/0:31,0:31:78.25:0,78,1013 0/0:64,0:64:99:0,162,2160 0/0:27,0:27:78.24:0,78,1031 0/0:28,0:28:78.24:0,78,1018 0/0:20,0:20:54.17:0,54,717 0/0:23,0:23:63.17:0,63,777 0/0:27,0:27:81.25:0,81,1004 0/0:21,0:21:63.20:0,63,803 0/0:26,0:26:72.22:0,72,880 0/0:26,0:26:75.23:0,75,954 0/0:28,0:28:75.23:0,75,943 0/1:24,21:45:99:614,0,680 0/0:26,0:26:72.22:0,72,920 0/0:27,0:27:75.23:0,75,944 0/0:30,0:30:78.24:0,78,977 0/0:37,0:37:99:0,99,1245 0/0:30,2:32:45.51:0,46,1033 0/0:26,0:26:75.23:0,75,935 0/1:12,19:31:99:505,0,340 0/1:12,10:22:99:282,0,350 0/1:13,9:22:99:215,0,438 19 6459509 . C T 63.48 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.685;DP=516;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5701;InbreedingCoeff=-0.0355;MQ=58.04;MQ0=0;MQRankSum=0.004;QD=4.23;ReadPosRankSum=-0.785 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,284 0/0:9,0:9:24.07:0,24,297 0/0:10,0:10:27.08:0,27,335 0/0:35,0:36:99:0,102,1267 0/0:33,0:33:96.30:0,96,1242 0/0:26,0:26:75.24:0,75,979 0/0:15,0:16:42.13:0,42,539 0/0:25,0:25:66.19:0,66,842 0/0:10,0:10:27.08:0,27,333 0/0:5,0:5:15.04:0,15,182 0/0:2,0:2:6.02:0,6,77 0/0:9,0:10:27.08:0,27,322 0/0:8,0:8:21.07:0,21,268 0/0:11,0:11:27.06:0,27,319 0/0:28,0:28:78.21:0,78,927 0/0:11,0:11:33.09:0,33,390 0/0:10,0:10:24.07:0,24,305 0/0:6,0:6:18:0,18,182 0/0:12,0:12:33.10:0,33,403 0/0:19,0:19:51.15:0,51,622 0/0:11,0:11:30.05:0,30,341 0/0:7,0:7:21.04:0,21,243 0/0:33,0:33:87.27:0,87,1120 0/0:15,0:15:39.13:0,39,529 0/0:17,1:18:22.48:0,22,556 0/0:23,0:23:57.12:0,57,716 0/0:4,0:4:12.04:0,12,146 0/0:6,0:6:18.05:0,18,215 0/0:7,0:7:15.05:0,15,184 0/1:2,3:5:60.55:88,0,61 0/0:6,0:6:18.05:0,18,215 0/0:17,0:17:42.13:0,42,537 0/1:8,2:10:37.67:38,0,256 0/0:5,0:5:15.05:0,15,189 0/0:10,0:10:27.08:0,27,340 0/0:8,0:8:24.08:0,24,303 0/0:9,0:9:24.07:0,24,292 0/0:9,0:9:24.07:0,24,287 0/0:9,0:9:24.07:0,24,293 0/0:4,0:4:9.02:0,9,98 0/0:3,0:3:9.03:0,9,114 0/0:2,0:2:6.02:0,6,78 19 6464750 . G C 7.49 . AC=3;AF=0.038;AN=80;BaseQRankSum=-4.802;DP=209;Dels=0.00;FS=93.777;HRun=2;HaplotypeScore=0.2670;InbreedingCoeff=0.0890;MQ=58.23;MQ0=0;MQRankSum=0.671;QD=0.62;ReadPosRankSum=-4.288 GT:AD:DP:GQ:PL 0/0:2,0:2:6.01:0,6,66 ./. 0/1:0,1:1:1.76:31,3,0 0/0:5,2:7:14.53:0,15,162 0/0:12,3:15:36.11:0,36,472 0/0:7,0:7:21.05:0,21,266 0/0:4,0:4:12.04:0,12,164 0/0:4,1:5:11.40:0,11,125 0/0:3,0:3:9.03:0,9,110 0/0:3,0:3:6.02:0,6,67 0/0:2,0:2:6.02:0,6,77 0/0:5,1:6:15.05:0,15,184 0/0:4,1:5:12.03:0,12,145 0/0:3,1:4:9.02:0,9,103 0/0:14,1:15:36.11:0,36,446 0/0:1,1:2:3.01:0,3,39 0/0:4,0:4:12.03:0,12,135 0/0:3,0:3:9.03:0,9,109 0/0:5,0:5:15.04:0,15,175 0/1:5,3:8:18.17:18,0,137 0/0:8,0:8:18.05:0,18,216 0/0:6,0:6:18.06:0,18,227 0/0:8,1:9:24.07:0,24,304 0/0:3,2:5:6.02:0,6,76 0/0:10,4:14:28.79:0,29,321 0/0:7,2:9:21.07:0,21,280 0/0:2,0:2:6.01:0,6,64 0/0:2,0:2:6.02:0,6,65 0/0:3,1:4:9.03:0,9,107 0/0:5,0:5:15.03:0,15,179 0/0:2,0:2:6.02:0,6,70 0/0:4,1:5:12.03:0,12,138 0/0:6,3:9:15.04:0,15,181 0/0:1,0:1:3.01:0,3,31 0/1:2,1:3:28.33:33,0,28 0/0:4,1:5:12.04:0,12,147 ./. 0/0:3,0:3:9.03:0,9,112 0/0:2,0:2:6.02:0,6,72 0/0:5,1:6:15.04:0,15,178 0/0:2,0:2:3.01:0,3,39 0/0:2,2:4:6.02:0,6,72 19 6464756 . C G 149 . AC=2;AF=0.025;AN=80;BaseQRankSum=-2.068;DP=228;Dels=0.00;FS=1.617;HRun=1;HaplotypeScore=0.2920;InbreedingCoeff=-0.0722;MQ=58.69;MQ0=0;MQRankSum=0.099;QD=11.46;ReadPosRankSum=0.936 GT:AD:DP:GQ:PL 0/0:2,0:2:5.99:0,6,62 0/0:1,0:1:3.01:0,3,32 ./. 0/0:10,0:10:27.08:0,27,325 0/0:16,0:16:39.12:0,39,516 0/0:7,0:7:21.07:0,21,276 0/0:5,0:5:15.04:0,15,184 0/0:7,0:7:15.05:0,15,208 0/0:6,0:6:12.03:0,12,148 0/0:2,0:2:6.01:0,6,65 0/0:2,0:2:6.02:0,6,77 0/0:7,0:7:21.07:0,21,259 0/0:5,0:5:15.05:0,15,184 0/0:3,0:3:9.03:0,9,111 0/0:17,0:17:42.13:0,42,523 0/0:2,0:2:6.02:0,6,72 0/0:3,0:3:9.03:0,9,108 0/0:3,0:3:9.03:0,9,110 0/0:5,0:5:15.04:0,15,180 0/0:11,0:11:24.07:0,24,307 0/0:8,0:8:15.05:0,15,190 0/0:6,0:6:18.06:0,18,224 0/0:10,0:10:30.09:0,30,381 0/0:5,0:5:15.03:0,15,158 0/0:14,0:14:27.08:0,27,357 0/0:11,0:11:27.07:0,27,341 0/0:2,0:2:6.02:0,6,71 0/0:2,0:2:6.01:0,6,61 0/0:7,0:7:21.04:0,21,236 0/1:1,4:5:21.94:122,0,22 0/0:3,0:3:9:0,9,90 0/0:5,0:5:15.03:0,15,162 0/1:4,4:8:87.74:88,0,110 ./. 0/0:3,0:3:9.01:0,9,87 0/0:5,0:5:12.04:0,12,157 0/0:1,0:2:3.01:0,3,33 0/0:3,0:3:6.02:0,6,76 0/0:3,0:3:9.03:0,9,114 0/0:5,0:5:12.04:0,12,150 0/0:1,0:1:3.01:0,3,39 0/0:5,0:5:12.04:0,12,148 19 6471430 . G C 181.66 . AC=13;AF=0.159;AN=82;BaseQRankSum=-6.637;DP=321;Dels=0.00;FS=88.720;HRun=4;HaplotypeScore=0.2416;InbreedingCoeff=-0.2420;MQ=58.19;MQ0=0;MQRankSum=-0.261;QD=1.61;ReadPosRankSum=-4.306 GT:AD:DP:GQ:PL 0/0:4,2:6:12.03:0,12,128 0/0:6,2:8:15.04:0,15,169 0/1:5,4:9:20.86:21,0,36 0/1:5,3:8:15.55:16,0,126 0/1:6,3:9:16.62:17,0,86 0/0:5,0:5:12.03:0,12,138 0/0:4,1:5:3.01:0,3,36 0/1:4,2:6:9.66:10,0,118 0/0:10,3:13:1.56:0,2,190 0/0:5,0:5:6.01:0,6,61 0/0:2,0:2:2.99:0,3,23 0/0:6,2:8:15.04:0,15,160 ./. 0/0:6,0:6:9.03:0,9,102 0/0:21,7:28:33.43:0,33,544 0/0:5,1:6:12.01:0,12,125 0/0:3,2:5:8.52:0,9,74 0/0:2,0:2:6.02:0,6,75 0/0:9,2:12:18.04:0,18,186 0/0:13,4:17:8.51:0,9,374 0/1:8,5:13:94.54:95,0,139 0/0:5,3:8:12.02:0,12,122 0/1:6,5:12:39.31:39,0,81 0/0:6,2:8:15.03:0,15,176 0/1:6,1:7:15.64:16,0,91 0/1:7,2:9:20.21:20,0,134 0/0:5,2:7:9.02:0,9,101 0/0:2,0:2:3.01:0,3,38 0/0:3,1:4:6.02:0,6,66 0/0:2,2:4:6.02:0,6,69 0/1:1,1:2:15.67:16,0,31 0/0:6,6:12:10.90:0,11,124 0/0:7,1:8:21.05:0,21,230 0/1:7,1:8:7.59:8,0,181 0/1:7,2:9:9.65:10,0,121 0/1:5,2:7:14.60:15,0,106 0/1:7,7:14:37.08:37,0,141 0/0:4,1:5:12.03:0,12,135 0/0:4,0:4:9.02:0,9,98 0/0:5,2:7:12.03:0,12,133 0/0:3,0:3:9.02:0,9,97 0/0:4,3:7:12.03:0,12,129 19 6476907 . G T 414.38 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.851;DP=1097;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.0202;InbreedingCoeff=-0.0244;MQ=58.91;MQ0=0;MQRankSum=-0.754;QD=13.81;ReadPosRankSum=1.352 GT:AD:DP:GQ:PL 0/0:24,0:24:60.15:0,60,679 0/0:15,0:15:45.13:0,45,528 0/0:19,0:19:48.12:0,48,579 0/0:55,0:55:99:0,141,1661 0/0:64,0:64:99:0,171,2022 0/0:38,0:38:78.23:0,78,980 0/0:29,0:29:66.18:0,66,814 0/0:25,0:25:69.19:0,69,808 0/0:16,0:16:45.13:0,45,528 0/0:15,0:15:36.09:0,36,424 0/0:17,0:18:42.11:0,42,486 0/1:6,7:13:99:229,0,138 0/0:15,0:15:36.07:0,36,405 0/1:9,8:17:99:248,0,249 0/0:66,0:66:99:0,171,1963 0/0:12,0:12:30.07:0,30,320 0/0:20,0:20:57.15:0,57,655 0/0:19,0:19:45.09:0,45,536 0/0:42,0:42:99:0,120,1350 0/0:36,0:37:96.23:0,96,1061 0/0:39,1:41:74.84:0,75,1129 0/0:23,0:24:57.13:0,57,627 0/0:73,0:74:99:0,168,2116 0/0:30,0:30:75.23:0,75,950 0/0:36,0:37:84.20:0,84,1007 0/0:25,0:25:57.16:0,57,718 0/0:16,0:17:45.12:0,45,522 0/0:17,0:17:39.09:0,39,444 0/0:11,0:11:30.06:0,30,349 0/0:20,0:20:45.11:0,45,506 0/0:14,0:15:36.08:0,36,374 0/0:33,0:34:84.19:0,84,933 0/0:29,0:29:81.19:0,81,898 0/0:17,0:17:48.10:0,48,514 0/0:15,0:16:39.06:0,39,420 0/0:11,0:11:33.09:0,33,368 0/0:41,0:42:99:0,99,1141 0/0:15,0:15:39.11:0,39,448 0/0:18,0:18:48.09:0,48,527 0/0:15,0:15:42.09:0,42,464 0/0:16,0:16:39.08:0,39,420 0/0:14,0:14:42.10:0,42,460 19 6531148 . GGCT G 53.35 . 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T G 19.23 . AC=6;AF=0.073;AN=82;BaseQRankSum=-5.065;DP=258;Dels=0.00;FS=41.397;HRun=2;HaplotypeScore=0.3776;InbreedingCoeff=-0.0691;MQ=59.05;MQ0=0;MQRankSum=-0.719;QD=0.27;ReadPosRankSum=-4.727 GT:AD:DP:GQ:PL ./. 0/0:4,0:4:9.01:0,9,82 0/0:2,2:4:0.62:6,2,0 0/0:8,6:14:9.03:0,9,121 0/1:8,4:12:28.30:28,0,161 0/0:7,3:10:18.04:0,18,197 0/0:6,1:7:18.05:0,18,208 0/0:4,1:5:9.03:0,9,110 0/0:5,0:6:12.01:0,12,130 0/0:1,1:2:3.01:0,3,37 0/0:3,0:3:6.02:0,6,66 0/0:1,1:2:3.01:0,3,33 0/0:3,0:3:9.02:0,9,96 0/0:6,1:7:18.03:0,18,192 0/1:15,8:23:7.23:7,0,412 0/0:4,2:6:12.02:0,12,125 0/0:1,1:2:3.01:0,3,31 0/0:2,0:2:3:0,3,28 0/0:5,2:8:9.03:0,9,113 0/0:6,1:7:18.04:0,18,194 0/0:6,1:7:18.04:0,18,206 0/0:3,0:3:3.01:0,3,31 0/1:16,9:25:22.87:23,0,423 0/0:7,2:9:21.06:0,21,246 0/0:6,5:11:14.51:0,15,165 0/0:6,1:8:12.03:0,12,134 0/1:2,1:3:21.57:22,0,64 0/1:2,1:4:13.68:14,0,47 0/0:1,1:2:3.01:0,3,37 0/0:3,1:4:9.01:0,9,89 0/0:1,1:2:3.01:0,3,32 0/0:5,3:8:12.03:0,12,132 0/0:2,1:3:3.01:0,3,34 0/1:2,1:3:18.64:19,0,59 0/0:6,1:7:18.05:0,18,216 0/0:4,0:4:8.99:0,9,77 0/0:6,2:8:14.96:0,15,161 0/0:2,0:2:6.01:0,6,63 0/0:2,1:3:6.01:0,6,64 0/0:5,0:5:15.04:0,15,177 0/0:3,2:5:3.01:0,3,38 0/0:3,2:5:9.03:0,9,102 19 6669934 . G A 18674.30 . AC=15;AF=0.179;AN=84;BaseQRankSum=10.458;DP=3781;Dels=0.00;FS=18.988;HRun=0;HaplotypeScore=3.8002;InbreedingCoeff=0.2696;MQ=58.79;MQ0=0;MQRankSum=-0.288;QD=16.87;ReadPosRankSum=2.352 GT:AD:DP:GQ:PL 1/1:1,63:64:99:2141,175,0 1/1:0,74:76:99:2425,205,0 0/1:36,18:54:99:470,0,762 0/0:216,1:219:99:0,559,6963 0/1:85,98:183:99:2806,0,2473 0/0:128,0:130:99:0,349,4242 0/0:117,0:117:99:0,313,3746 0/0:124,0:124:99:0,331,4011 0/0:72,0:72:99:0,198,2211 0/0:56,1:57:99:0,138,1529 0/0:58,1:59:99:0,123,1689 0/0:58,0:58:99:0,141,1605 0/0:40,0:40:99:0,108,1226 0/0:54,0:54:99:0,150,1653 0/0:231,0:236:99:0,559,6393 0/0:62,0:62:99:0,159,1745 0/0:60,0:61:99:0,165,1792 0/0:60,0:60:99:0,147,1661 0/0:81,0:84:99:0,207,2332 0/1:64,89:155:99:2269,0,1498 0/0:96,1:97:99:0,241,2724 0/0:79,1:81:99:0,180,2314 0/0:215,0:215:99:0,593,7151 0/1:63,45:110:99:1098,0,1728 0/1:63,71:134:99:2040,0,1620 0/0:121,0:121:99:0,319,3851 0/1:18,24:42:99:660,0,434 0/1:27,34:62:99:889,0,657 1/1:0,46:46:99:1522,126,0 0/0:81,0:82:99:0,217,2413 0/0:51,0:51:99:0,135,1523 0/0:127,0:127:99:0,328,3732 0/0:89,0:89:99:0,235,2702 0/0:47,0:47:99:0,129,1448 0/0:52,1:53:99:0,132,1482 0/0:48,0:49:99:0,132,1475 0/1:65,54:120:99:1378,0,1650 0/0:48,0:49:99:0,129,1455 0/1:26,35:61:99:977,0,632 0/0:64,0:65:99:0,180,2035 0/0:60,1:61:99:0,119,1689 0/0:54,0:54:99:0,141,1572 19 6686192 . G T 4097.68 . 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G T 1940.91 . 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T C 47320.76 . 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G A 1896.84 . 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C T 718.40 . 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A G 474.54 . 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T C 6072.59 . 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G A 5686.94 . 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C T 668.80 . 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C T 10215.61 . 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C T 4061.89 . 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G C 500.34 . 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G A 67596.46 . 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T C 353.19 . 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G A 9622.08 . 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C T 474.46 . 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C T 13071.45 . 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G A 13286.82 . 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C T 3040.04 . 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G A 1067.50 . 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G A 19484.69 . 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A C 742.42 . 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C T 23953.97 . 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C T 497.50 . 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C T 670.05 . 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G A 22563.06 . 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G A 1450.48 . 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C T 1043.79 . 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T C 2172.82 . 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C T 1938 . 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C G 2363.34 . 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G T 13706.35 . AC=36;AF=0.429;AN=84;BaseQRankSum=-20.622;DP=1200;Dels=0.00;FS=2.669;HRun=0;HaplotypeScore=0.7450;InbreedingCoeff=-0.0695;MQ=59.07;MQ0=0;MQRankSum=0.104;QD=16.88;ReadPosRankSum=-0.927 GT:AD:DP:GQ:PL 0/0:28,0:28:75.23:0,75,956 0/1:16,6:22:99:122,0,537 0/1:8,9:17:99:252,0,250 0/1:29,27:56:99:722,0,911 0/0:39,0:39:99:0,111,1505 0/0:23,0:23:66.20:0,66,870 0/0:33,0:33:87.28:0,87,1181 0/0:42,0:42:99:0,108,1486 0/1:18,11:29:99:305,0,507 0/1:14,8:22:99:199,0,440 0/1:17,8:25:99:214,0,518 0/0:20,0:20:54.17:0,54,674 0/1:8,8:16:99:206,0,257 0/1:21,11:32:99:269,0,657 0/1:45,46:91:99:1253,0,1322 0/1:11,10:21:99:300,0,362 0/1:12,10:22:99:273,0,378 0/1:10,9:19:99:235,0,327 1/1:0,52:52:99:1669,135,0 0/1:18,11:29:99:332,0,464 0/1:22,14:37:99:374,0,620 0/0:20,0:20:57.18:0,57,729 1/1:0,42:42:99:1382,114,0 1/1:0,14:14:36.11:446,36,0 1/1:0,25:25:72.22:866,72,0 0/1:14,5:19:99:124,0,479 1/1:0,21:22:60.18:724,60,0 1/1:0,24:24:69.21:821,69,0 1/1:0,16:16:48.14:562,48,0 0/1:11,8:19:99:237,0,341 0/1:15,13:28:99:359,0,459 0/1:13,18:31:99:504,0,400 0/0:32,0:32:96.31:0,96,1223 0/0:34,0:34:99:0,102,1301 0/1:13,9:22:99:260,0,430 0/0:31,0:31:87.28:0,87,1123 0/0:30,0:30:81.24:0,81,996 0/1:13,5:18:94.80:95,0,384 0/1:14,7:21:99:182,0,438 0/0:28,0:28:78.24:0,78,982 0/1:7,14:21:99:419,0,212 0/0:28,0:28:81.25:0,81,1013 19 8159409 . G T 31793.88 . AC=54;AF=0.643;AN=84;BaseQRankSum=12.935;DP=1478;Dels=0.00;FS=2.414;HRun=0;HaplotypeScore=1.1486;InbreedingCoeff=0.1704;MQ=59.06;MQ0=0;MQRankSum=0.361;QD=25.37;ReadPosRankSum=4.399 GT:AD:DP:GQ:PL 0/0:28,0:28:78.20:0,78,896 0/1:18,12:30:99:328,0,445 1/1:0,17:17:39.12:490,39,0 1/1:0,56:56:99:1821,144,0 1/1:0,48:49:99:1733,135,0 1/1:0,27:27:72.23:930,72,0 0/1:22,18:40:99:512,0,594 1/1:1,32:33:53.84:1040,54,0 0/1:15,21:36:99:609,0,400 0/1:11,15:26:99:460,0,276 0/1:20,14:34:99:366,0,530 0/0:35,0:35:96.24:0,96,1089 0/1:14,19:33:99:554,0,386 0/1:22,21:43:99:595,0,581 1/1:0,96:96:99:3160,250,0 1/1:0,35:35:96.31:1214,96,0 1/1:0,22:22:63.20:794,63,0 1/1:0,29:29:78.24:974,78,0 1/1:0,45:45:99:1454,117,0 0/1:25,26:51:99:794,0,689 0/1:22,17:39:99:462,0,560 0/0:28,0:28:63.18:0,63,780 1/1:0,44:44:99:1613,129,0 1/1:0,31:31:84.27:1076,84,0 1/1:0,32:32:84.26:1077,84,0 0/1:17,9:26:99:265,0,526 1/1:0,23:23:66.21:816,66,0 1/1:0,36:36:99:1279,102,0 1/1:0,29:29:81.24:986,81,0 1/1:0,33:33:93.29:1151,93,0 0/1:18,10:28:99:264,0,522 1/1:0,47:47:99:1526,120,0 1/1:0,41:41:99:1397,114,0 0/0:34,0:34:96.27:0,96,1115 0/1:11,24:35:99:736,0,260 0/1:16,17:33:99:452,0,408 0/0:31,0:31:81.23:0,81,944 0/1:19,9:28:99:228,0,524 0/1:13,13:26:99:374,0,349 0/0:31,0:31:84.23:0,84,989 0/1:10,10:20:99:267,0,280 0/0:38,0:38:99:0,108,1221 19 8161450 . C T 12858.33 . AC=18;AF=0.214;AN=84;BaseQRankSum=9.523;DP=1829;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.0082;InbreedingCoeff=0.2929;MQ=59.27;MQ0=0;MQRankSum=0.147;QD=18.85;ReadPosRankSum=2.103 GT:AD:DP:GQ:PL 0/0:32,0:32:84.24:0,84,1013 0/0:36,0:36:99:0,99,1141 0/1:17,15:32:99:453,0,497 0/1:40,47:87:99:1239,0,1125 1/1:0,65:65:99:2128,166,0 1/1:0,46:46:99:1615,123,0 0/1:29,23:52:99:727,0,809 1/1:0,42:42:99:1379,108,0 0/0:31,0:31:87.24:0,87,999 0/0:28,0:28:78.23:0,78,939 0/0:33,0:33:93.26:0,93,1109 0/0:44,0:44:99:0,117,1410 0/0:35,0:35:96.28:0,96,1156 0/0:39,0:39:99:0,111,1306 0/1:54,54:109:99:1552,0,1329 0/1:18,16:34:99:420,0,466 0/1:17,14:31:99:430,0,410 0/1:16,20:36:99:564,0,424 0/0:54,0:54:99:0,153,1755 0/0:76,0:76:99:0,196,2346 0/0:63,0:63:99:0,171,2006 0/0:40,0:40:99:0,108,1269 0/0:94,0:96:99:0,241,3077 0/0:45,0:45:99:0,120,1539 0/0:78,0:78:99:0,187,2355 0/0:31,1:32:43.62:0,44,1019 0/0:36,0:36:93.28:0,93,1148 0/0:30,0:30:84.25:0,84,1007 0/0:33,0:33:90.26:0,90,1087 0/1:22,17:39:99:520,0,602 0/0:26,0:26:75.21:0,75,875 0/1:31,19:50:99:512,0,852 1/1:0,28:28:72.22:887,72,0 0/0:21,0:21:57.16:0,57,672 0/0:35,0:35:99:0,99,1180 0/1:16,15:31:99:433,0,450 0/0:43,0:43:99:0,120,1419 0/0:26,0:26:66.17:0,66,774 0/0:38,0:38:99:0,108,1245 0/0:40,0:40:99:0,105,1237 0/0:26,1:27:42.10:0,42,855 0/0:30,0:30:81.23:0,81,938 19 8183871 . G A 1404.77 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.233;DP=1482;Dels=0.00;FS=2.039;HRun=0;HaplotypeScore=0.6922;InbreedingCoeff=-0.0370;MQ=59.21;MQ0=0;MQRankSum=0.414;QD=12.54;ReadPosRankSum=-0.051 GT:AD:DP:GQ:PL 0/0:24,0:24:69.19:0,69,814 0/0:30,0:30:90.27:0,90,1080 0/0:26,0:26:78.21:0,78,910 0/0:77,0:77:99:0,223,2801 0/0:65,0:65:99:0,178,2315 0/0:48,2:50:96.66:0,97,1716 0/0:36,0:36:99:0,99,1294 0/0:45,0:45:99:0,126,1647 0/0:30,0:30:87.24:0,87,1050 0/0:21,0:21:57.15:0,57,686 0/0:32,0:32:93.24:0,93,1051 0/0:36,0:36:99:0,102,1184 0/0:19,0:19:57.16:0,57,666 0/1:11,13:25:99:400,0,332 0/0:82,0:82:99:0,226,2644 0/0:29,0:29:84.25:0,84,1041 0/0:26,0:26:72.20:0,72,845 0/0:31,0:31:87.25:0,87,1053 0/1:20,9:30:99:177,0,650 0/1:26,31:57:99:903,0,680 0/0:38,0:38:99:0,102,1210 0/0:29,0:29:87.22:0,87,1001 0/0:71,0:71:99:0,208,2610 0/0:34,0:34:99:0,99,1279 0/0:43,0:43:99:0,120,1540 0/0:32,0:32:93.26:0,93,1177 0/0:18,0:18:54.16:0,54,657 0/0:23,0:23:69.18:0,69,817 0/0:12,0:12:33.10:0,33,415 0/0:21,0:21:60.17:0,60,733 0/0:27,0:27:78.23:0,78,939 0/0:48,0:48:99:0,138,1643 0/0:42,0:42:99:0,117,1393 0/0:29,0:29:87.24:0,87,1024 0/0:25,0:25:66.17:0,66,762 0/0:31,0:31:81.24:0,81,980 0/0:52,0:52:99:0,153,1809 0/0:30,0:30:84.22:0,84,1011 0/0:26,0:26:75.23:0,75,934 0/0:17,0:17:42.11:0,42,494 0/0:25,0:25:75.22:0,75,903 0/0:38,0:38:99:0,105,1242 19 8188707 . C G 44.32 . AC=4;AF=0.048;AN=84;BaseQRankSum=-5.890;DP=947;Dels=0.00;FS=126.744;HRun=2;HaplotypeScore=1.0801;InbreedingCoeff=-0.0853;MQ=58.25;MQ0=0;MQRankSum=-1.008;QD=0.40;ReadPosRankSum=-6.549 GT:AD:DP:GQ:PL 0/0:9,4:13:0.87:7,0,202 0/0:13,1:14:33:0,33,311 0/0:15,2:17:33.06:0,33,353 0/1:35,16:51:47.38:47,0,547 0/0:36,15:51:10.35:0,10,679 0/0:21,9:30:20.36:0,20,420 0/0:19,10:29:15.40:0,15,378 0/0:27,8:35:52.66:0,53,579 0/0:13,4:17:17.39:0,17,389 0/0:10,5:15:1.56:4,0,189 0/0:14,4:18:39.05:0,39,394 0/0:7,2:9:9:0,9,80 0/1:6,8:14:40.20:40,0,104 0/0:15,1:16:33.08:0,33,356 0/0:42,10:52:96.20:0,96,1011 0/0:14,2:16:27.07:0,27,295 0/0:13,1:14:36.08:0,36,378 0/1:9,5:14:7.51:8,0,184 0/0:19,0:19:45.12:0,45,506 0/0:39,6:45:35.22:0,35,848 0/1:26,5:31:27.58:28,0,531 0/0:16,4:21:27.06:0,27,291 0/0:34,18:52:57.14:0,57,871 0/0:22,8:30:39.08:0,39,415 0/0:21,6:27:36.06:0,36,376 0/0:29,10:39:44.35:0,44,613 0/0:6,1:7:6.02:0,6,65 0/0:10,2:12:24.06:0,24,261 0/0:7,1:8:18.03:0,18,191 0/0:18,2:20:33.05:0,33,333 0/0:7,4:11:6.02:0,6,69 0/0:28,4:32:57.07:0,57,589 0/0:13,5:18:0.45:0,0,264 0/0:7,1:8:12.03:0,12,132 0/0:15,5:20:39.07:0,39,401 0/0:14,3:17:39.06:0,39,403 0/0:23,5:28:57.14:0,57,616 0/0:9,2:11:21.04:0,21,220 0/0:11,2:13:30.02:0,30,301 0/0:14,2:16:24.03:0,24,241 0/0:17,2:20:36.04:0,36,360 0/0:11,6:17:18.03:0,18,191 19 8188737 . C G 125.42 . AC=4;AF=0.048;AN=84;BaseQRankSum=0.338;DP=913;Dels=0.00;FS=339.174;HRun=2;HaplotypeScore=1.2464;InbreedingCoeff=-0.0854;MQ=58.01;MQ0=0;MQRankSum=-0.882;QD=1.87;ReadPosRankSum=-7.600 GT:AD:DP:GQ:PL 0/0:11,3:14:27.06:0,27,285 0/0:10,1:11:0.39:0,0,238 0/0:15,4:19:38.56:0,39,419 0/0:55,3:58:91.97:0,92,1722 0/0:46,0:46:99:0,129,1477 0/0:36,2:38:95.65:0,96,1028 0/0:26,2:28:78.20:0,78,867 0/0:31,5:36:87.23:0,87,995 0/0:14,3:17:42.08:0,42,432 0/0:13,0:13:36.07:0,36,374 0/0:18,2:20:14.14:0,14,470 0/0:13,1:14:39.09:0,39,410 0/0:10,1:11:1.15:5,0,250 0/0:8,2:11:21.03:0,21,209 0/0:49,4:53:99:0,111,1409 0/0:19,1:20:18.52:0,19,518 0/0:9,2:11:3.39:0,3,261 0/0:7,0:7:21.04:0,21,214 0/0:17,2:20:14.68:0,15,439 0/0:23,9:32:12.12:0,12,639 0/0:23,3:26:34.38:0,34,709 0/0:15,1:16:42.10:0,42,451 0/0:42,4:46:99:0,123,1431 0/0:19,0:19:51.13:0,51,590 0/0:36,1:37:65.95:0,66,1095 0/0:34,4:38:67.94:0,68,1122 0/0:6,0:6:18.05:0,18,196 0/0:6,2:8:15.03:0,15,155 0/0:6,2:8:18.04:0,18,184 0/0:10,1:11:2.06:2,0,280 0/0:16,2:18:14.68:0,15,444 0/1:19,8:27:99:104,0,475 0/1:8,4:12:9.37:9,0,207 0/0:12,2:14:4.42:0,4,283 0/0:14,2:16:39.07:0,39,399 0/0:18,2:20:20.98:0,21,528 0/0:31,3:34:25.09:0,25,810 0/0:15,1:16:30.64:0,31,357 0/1:8,4:12:39.83:40,0,178 0/0:15,1:16:42.11:0,42,462 0/1:13,3:16:52.08:52,0,347 0/0:16,0:16:48.10:0,48,502 19 8188812 . C T 1304.14 . AC=3;AF=0.036;AN=84;BaseQRankSum=0.688;DP=1421;Dels=0.00;FS=7.120;HRun=0;HaplotypeScore=1.0290;InbreedingCoeff=-0.0371;MQ=57.37;MQ0=0;MQRankSum=0.295;QD=11.96;ReadPosRankSum=-1.423 GT:AD:DP:GQ:PL 0/0:22,0:22:66.18:0,66,744 0/0:24,0:24:72.19:0,72,810 0/0:26,0:26:72.17:0,72,811 0/0:74,0:74:99:0,193,2321 0/0:58,0:58:99:0,162,1959 0/0:46,0:46:99:0,114,1425 0/0:41,0:41:99:0,114,1388 0/0:46,0:46:99:0,117,1476 0/0:27,0:27:63.17:0,63,740 0/0:32,0:32:90.25:0,90,1039 0/0:21,0:21:60.16:0,60,680 0/0:22,0:22:48.14:0,48,585 0/0:19,0:19:48.13:0,48,552 0/1:10,8:18:99:177,0,259 0/0:75,0:77:99:0,183,2138 0/0:32,0:32:81.18:0,81,929 0/0:25,0:25:72.19:0,72,824 0/0:20,0:20:51.11:0,51,576 0/1:17,17:34:99:427,0,354 0/1:26,31:57:99:776,0,647 0/0:42,0:43:99:0,114,1282 0/0:26,0:26:63.16:0,63,710 0/0:70,0:70:99:0,193,2287 0/0:49,0:49:99:0,123,1489 0/0:52,0:52:99:0,129,1614 0/0:38,0:38:90.25:0,90,1121 0/0:12,0:12:30.08:0,30,339 0/0:30,0:30:87.23:0,87,985 0/0:28,0:28:66.18:0,66,760 0/0:30,0:30:81.23:0,81,958 0/0:18,0:18:54.08:0,54,579 0/0:52,0:53:99:0,141,1594 0/0:33,0:33:84.22:0,84,991 0/0:20,0:20:48.12:0,48,535 0/0:18,0:18:48.13:0,48,552 0/0:22,0:22:57.15:0,57,636 0/0:40,0:40:99:0,105,1128 0/0:18,0:18:45.09:0,45,498 0/0:28,0:29:78.16:0,78,843 0/0:31,0:31:90.23:0,90,1010 0/0:22,0:22:60.14:0,60,659 0/0:18,0:18:51.13:0,51,565 19 8191184 . C T 1157.52 . AC=18;AF=0.214;AN=84;BaseQRankSum=-0.442;DP=361;Dels=0.00;FS=1.948;HRun=1;HaplotypeScore=0.2714;InbreedingCoeff=-0.0206;MQ=58.74;MQ0=0;MQRankSum=0.205;QD=8.90;ReadPosRankSum=-0.359 GT:AD:DP:GQ:PL 0/0:7,0:7:18.06:0,18,227 0/0:9,0:9:27.05:0,27,292 0/0:11,0:11:27.06:0,27,313 0/1:8,7:15:99:161,0,251 0/0:12,0:12:30.10:0,30,409 0/0:6,0:6:15.04:0,15,181 0/0:6,0:6:18.06:0,18,241 0/0:13,0:13:39.11:0,39,496 0/1:8,2:10:44.31:44,0,224 0/0:6,0:6:18.05:0,18,196 0/1:5,2:7:55.90:56,0,125 0/0:7,0:7:18.05:0,18,218 0/1:3,3:6:85:94,0,85 0/0:9,0:9:27.07:0,27,311 0/0:22,0:22:60.17:0,60,715 0/1:4,1:5:21.94:22,0,122 0/0:10,0:10:27.06:0,27,304 0/1:2,1:3:27.10:27,0,63 0/1:6,2:9:52.89:53,0,163 0/0:14,0:14:42.12:0,42,503 0/0:19,0:19:42.12:0,42,516 0/0:10,0:10:27.07:0,27,318 0/1:13,5:18:99:146,0,324 0/1:3,1:4:25.76:26,0,108 0/1:11,3:14:75.42:75,0,254 0/0:3,0:3:6.02:0,6,77 1/1:0,5:5:12.03:139,12,0 1/1:0,6:6:18.04:197,18,0 0/1:3,3:6:51.99:60,0,52 0/0:14,0:14:36.11:0,36,448 0/0:6,0:6:18.02:0,18,197 0/0:6,0:6:15.05:0,15,194 0/0:4,0:4:12.03:0,12,135 0/0:5,0:5:15.04:0,15,169 0/0:3,0:3:9.02:0,9,96 0/0:10,0:10:30.09:0,30,363 0/0:9,0:9:24.06:0,24,274 0/1:6,3:9:84.29:84,0,163 0/1:6,3:9:58.95:59,0,171 0/0:8,0:8:21.06:0,21,244 0/1:1,3:4:27.28:90,0,27 0/0:2,0:2:6.02:0,6,72 19 8201121 . C T 968.77 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.431;DP=2560;Dels=0.00;FS=3.177;HRun=0;HaplotypeScore=2.6077;InbreedingCoeff=-0.0244;MQ=58.80;MQ0=0;MQRankSum=-0.369;QD=13.46;ReadPosRankSum=-0.842 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,123,1379 0/0:35,0:35:99:0,99,1097 0/0:38,0:38:99:0,111,1252 0/0:162,0:163:99:0,445,5287 0/0:162,0:162:99:0,448,5474 0/0:99,0:99:99:0,259,3103 0/0:65,1:66:99:0,140,2021 0/0:92,0:92:99:0,238,2768 0/0:53,0:54:99:0,150,1655 0/0:42,0:42:99:0,114,1271 0/0:36,0:37:96.26:0,96,1103 0/0:33,0:33:87.22:0,87,983 0/0:36,0:36:96.24:0,96,1064 0/0:41,1:42:99:0,102,1310 0/0:130,0:131:99:0,352,3937 0/0:55,0:55:99:0,162,1820 0/0:36,0:36:99:0,99,1116 0/0:48,1:49:99:0,129,1454 0/0:75,0:75:99:0,198,2205 0/0:85,0:85:99:0,238,2677 0/0:63,0:64:99:0,174,1957 0/0:53,0:53:99:0,144,1622 0/0:166,0:166:99:0,457,5611 0/0:75,0:75:99:0,199,2419 0/0:96,0:96:99:0,262,3214 0/0:77,0:77:99:0,205,2450 0/0:31,0:31:87.21:0,87,949 0/0:37,0:37:99:0,105,1171 0/0:35,0:35:93.23:0,93,1024 0/0:34,0:34:90.24:0,90,1018 0/0:47,0:47:99:0,132,1526 0/0:57,0:57:99:0,150,1708 0/0:64,0:64:99:0,174,1982 0/1:17,19:36:99:583,0,400 0/1:21,15:36:99:448,0,476 0/0:44,0:44:99:0,117,1366 0/0:59,0:59:99:0,165,1849 0/0:33,0:33:96.25:0,96,1085 0/0:40,0:40:99:0,111,1258 0/0:45,1:46:99:0,126,1418 0/0:33,0:33:93.22:0,93,1021 0/0:22,0:22:57.16:0,57,650 19 8201279 . C T 1704.49 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.025;DP=2195;Dels=0.00;FS=15.120;HRun=1;HaplotypeScore=1.7593;InbreedingCoeff=-0.0244;MQ=58.75;MQ0=0;MQRankSum=0.963;QD=13.42;ReadPosRankSum=-0.529 GT:AD:DP:GQ:PL 0/0:31,0:31:87.26:0,87,1059 0/0:29,0:29:84.25:0,84,1008 0/0:28,0:28:78.24:0,78,971 0/0:120,0:120:99:0,343,4457 0/0:118,0:118:99:0,337,4393 0/1:36,34:70:99:1043,0,1100 0/1:30,27:57:99:724,0,946 0/0:66,0:66:99:0,190,2439 0/0:27,0:27:75.23:0,75,928 0/0:44,0:44:99:0,129,1541 0/0:40,0:40:99:0,117,1429 0/0:29,0:29:87.27:0,87,1064 0/0:27,0:27:75.23:0,75,912 0/0:33,0:33:96.27:0,96,1158 0/0:109,0:109:99:0,295,3556 0/0:45,0:45:99:0,126,1550 0/0:46,0:46:99:0,126,1547 0/0:38,0:38:99:0,114,1388 0/0:61,0:62:99:0,156,1910 0/0:93,0:93:99:0,253,3081 0/0:74,0:75:99:0,202,2403 0/0:46,0:46:99:0,132,1606 0/0:145,0:145:99:0,406,5236 0/0:58,0:58:99:0,168,2157 0/0:81,0:81:99:0,223,2893 0/0:60,0:60:99:0,159,2089 0/0:30,0:30:84.25:0,84,1006 0/0:35,0:35:99:0,102,1240 0/0:36,0:36:99:0,99,1208 0/0:31,0:31:93.28:0,93,1123 0/0:38,0:38:99:0,114,1404 0/0:68,0:68:99:0,187,2292 0/0:56,0:56:99:0,156,1876 0/0:32,0:32:93.29:0,93,1143 0/0:33,0:33:90.28:0,90,1110 0/0:32,0:32:90.27:0,90,1090 0/0:52,0:53:99:0,141,1653 0/0:27,0:27:81.24:0,81,975 0/0:42,0:42:99:0,123,1460 0/0:41,0:41:99:0,114,1396 0/0:34,0:34:99:0,99,1209 0/0:30,0:30:87.27:0,87,1061 19 8212222 . C T 186.47 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.230;DP=409;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.6530;InbreedingCoeff=-0.0005;MQ=58.77;MQ0=0;MQRankSum=-0.130;QD=16.95;ReadPosRankSum=-0.465 GT:AD:DP:GQ:PL 0/0:6,0:6:18.05:0,18,205 0/0:9,0:9:27.08:0,27,323 0/0:8,0:8:18.05:0,18,229 0/0:14,0:14:39.12:0,39,499 0/0:14,0:14:36.11:0,36,465 0/0:16,0:16:42.13:0,42,532 0/0:6,0:6:15.03:0,15,183 0/0:9,0:9:24.07:0,24,299 0/0:5,0:5:12.03:0,12,141 0/0:13,0:13:36.08:0,36,413 0/0:8,0:8:21.05:0,21,232 0/0:8,0:8:21.06:0,21,246 0/0:8,0:8:18.05:0,18,226 0/0:11,0:11:30.09:0,30,372 0/0:28,0:28:66.16:0,66,790 0/0:15,0:15:42.13:0,42,522 0/0:10,0:10:27.08:0,27,324 0/0:3,0:3:9.03:0,9,105 0/0:6,0:6:18.03:0,18,208 0/0:11,0:11:27.08:0,27,335 0/0:19,0:19:48.14:0,48,599 0/0:7,0:7:18.05:0,18,217 0/0:19,0:19:51.17:0,51,673 0/0:7,0:7:12.04:0,12,160 0/0:19,0:19:48.14:0,48,620 0/0:10,1:11:27.09:0,27,364 0/1:1,5:6:13.50:156,0,14 0/1:1,4:5:26.57:93,0,27 0/0:7,0:7:21.06:0,21,254 0/0:6,0:6:18.04:0,18,194 0/0:3,0:3:6.02:0,6,71 0/0:11,0:11:30.06:0,30,334 0/0:8,0:8:18.06:0,18,225 0/0:8,0:8:24.06:0,24,269 0/0:7,0:7:21.06:0,21,254 0/0:9,0:9:24.05:0,24,279 0/0:15,0:16:33.10:0,33,412 0/0:6,0:6:15.02:0,15,155 0/0:6,0:6:15.05:0,15,190 0/0:5,0:5:15.04:0,15,168 0/0:7,0:7:21.06:0,21,243 0/0:9,0:9:27.08:0,27,336 19 8212229 . G A 111.84 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.802;DP=423;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5941;InbreedingCoeff=-0.0185;MQ=58.85;MQ0=0;MQRankSum=-0.786;QD=13.98;ReadPosRankSum=-0.324 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,178 0/0:9,0:9:27.07:0,27,307 0/0:7,0:7:18.05:0,18,216 0/0:18,0:18:48.14:0,48,576 0/0:16,0:16:39.11:0,39,485 0/0:16,0:16:42.12:0,42,531 0/0:7,0:7:18.05:0,18,218 0/0:9,0:9:24.08:0,24,312 0/0:6,0:6:12.04:0,12,148 0/0:10,0:10:27.08:0,27,309 0/0:9,0:9:24.07:0,24,288 0/0:6,0:6:18.05:0,18,197 0/0:8,0:8:18.04:0,18,211 0/0:9,0:9:24.06:0,24,267 0/0:28,0:28:69.17:0,69,795 0/0:18,0:18:45.12:0,45,516 0/0:9,0:9:24.05:0,24,267 0/0:4,0:4:12.02:0,12,122 0/0:5,0:5:15.04:0,15,169 0/0:11,0:11:27.08:0,27,337 0/0:20,0:21:48.14:0,48,582 0/0:8,0:8:21.06:0,21,246 0/0:21,0:22:57.14:0,57,657 0/0:9,0:9:24.06:0,24,295 0/0:20,0:20:51.15:0,51,624 0/0:11,0:11:33.10:0,33,403 0/0:7,0:7:18.05:0,18,205 0/0:5,0:5:12.03:0,12,135 0/0:7,0:7:21.05:0,21,231 0/0:6,0:6:18.04:0,18,200 0/0:3,0:3:6.02:0,6,69 0/0:12,0:12:33.08:0,33,363 0/1:2,5:8:26.69:158,0,27 0/0:7,0:7:18.05:0,18,210 0/0:5,0:5:15.04:0,15,162 0/0:10,0:10:24.07:0,24,291 0/0:17,0:17:36.10:0,36,427 0/0:6,0:6:15.04:0,15,161 0/0:8,0:8:21.06:0,21,259 0/0:5,0:5:15.04:0,15,166 0/0:6,0:6:15.04:0,15,169 0/0:9,0:10:24.06:0,24,264 19 8212232 . C T 45.08 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.293;DP=409;Dels=0.00;FS=1.886;HRun=0;HaplotypeScore=0.5012;InbreedingCoeff=-0.0237;MQ=58.77;MQ0=0;MQRankSum=0.748;QD=5.01;ReadPosRankSum=-0.955 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,183 0/0:9,0:9:27.08:0,27,332 0/0:7,0:7:18.05:0,18,218 0/0:18,0:18:51.16:0,51,657 0/0:16,0:16:39.13:0,39,528 0/0:15,0:15:39.13:0,39,534 0/0:7,0:7:18.06:0,18,237 0/1:5,4:9:91.18:91,0,180 0/0:5,0:5:12.04:0,12,149 0/0:9,0:9:27.08:0,27,328 0/0:10,0:10:27.08:0,27,328 0/0:6,0:6:18.05:0,18,215 0/0:6,0:6:15.05:0,15,187 0/0:7,0:7:21.06:0,21,253 0/0:28,0:28:72.22:0,72,900 0/0:17,0:18:48.14:0,48,566 0/0:7,0:7:18.06:0,18,230 0/0:3,0:3:6.02:0,6,71 0/0:5,0:5:15.04:0,15,180 0/0:9,0:9:21.07:0,21,276 0/0:19,0:19:45.13:0,45,562 0/0:7,0:7:21.07:0,21,261 0/0:22,0:22:60.16:0,60,762 0/0:9,0:9:21.07:0,21,282 0/0:20,0:20:51.16:0,51,672 0/0:11,0:11:33.11:0,33,447 0/0:7,0:7:15.05:0,15,187 0/0:4,0:4:9.03:0,9,117 0/0:7,0:7:21.07:0,21,260 0/0:6,0:6:18.06:0,18,219 0/0:3,0:3:6.02:0,6,77 0/0:12,0:12:36.10:0,36,426 0/0:8,0:8:21.05:0,21,253 0/0:6,0:6:18.06:0,18,225 0/0:5,0:5:15.05:0,15,185 0/0:10,0:10:24.06:0,24,301 0/0:16,0:16:36.11:0,36,459 0/0:5,1:6:15.05:0,15,183 0/0:8,0:8:21.07:0,21,260 0/0:7,0:7:18.05:0,18,226 0/0:6,0:6:18.05:0,18,206 0/0:11,0:11:30.09:0,30,368 19 8212263 . G A 2077.30 . AC=22;AF=0.268;AN=82;BaseQRankSum=0.793;DP=311;Dels=0.00;FS=10.967;HRun=0;HaplotypeScore=0.3079;InbreedingCoeff=0.0676;MQ=59.11;MQ0=0;MQRankSum=0.943;QD=15.39;ReadPosRankSum=-0.231 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:74,6,0 1/1:0,11:11:27.08:329,27,0 0/1:2,3:5:51.56:88,0,52 0/0:18,0:18:51.13:0,51,601 0/0:16,0:16:42.13:0,42,531 0/0:11,0:11:33.10:0,33,415 0/1:5,3:8:85.05:85,0,162 0/0:6,0:6:18.06:0,18,224 0/1:4,1:5:14.61:15,0,113 0/1:1,1:2:21.65:26,0,22 0/0:6,0:6:18.05:0,18,205 0/0:7,0:7:15.05:0,15,188 0/1:1,5:7:18.93:152,0,19 0/0:5,0:5:15.04:0,15,174 0/1:7,11:18:99:204,0,175 0/1:8,6:14:99:166,0,165 0/0:5,0:5:15.04:0,15,173 0/1:1,3:4:30.29:61,0,30 0/0:5,0:5:12.04:0,12,140 0/0:10,0:10:27.08:0,27,315 0/0:15,0:15:33.08:0,33,399 0/0:6,0:6:15.04:0,15,180 0/0:15,0:15:45.11:0,45,515 0/1:5,5:10:81.94:82,0,140 1/1:0,9:9:24.08:299,24,0 0/0:4,0:4:12.03:0,12,141 0/1:1,5:6:12.54:161,0,13 ./. 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6.02:0,6,72 0/0:1,0:1:3.01:0,3,34 0/0:9,0:9:18.06:0,18,229 0/1:2,4:6:53.33:123,0,53 0/1:3,1:4:24.94:25,0,90 0/0:4,0:4:12.02:0,12,127 1/1:0,7:7:21.06:253,21,0 0/1:7,3:10:79.15:79,0,215 0/1:5,2:7:43.82:44,0,147 0/0:10,0:10:21.07:0,21,266 0/0:10,0:10:27.06:0,27,306 0/0:2,0:2:6.01:0,6,64 0/0:8,0:8:21.06:0,21,242 19 8326866 . C T 4909.83 . AC=12;AF=0.143;AN=84;BaseQRankSum=2.077;DP=1426;Dels=0.00;FS=21.733;HRun=0;HaplotypeScore=1.0552;InbreedingCoeff=0.2423;MQ=58.42;MQ0=0;MQRankSum=0.115;QD=17.11;ReadPosRankSum=0.480 GT:AD:DP:GQ:PL 0/1:13,11:24:99:281,0,285 0/1:6,8:14:99:244,0,139 0/0:17,0:17:48.12:0,48,529 0/0:113,0:113:99:0,280,3542 0/0:83,0:83:99:0,202,2528 0/0:51,0:51:99:0,129,1544 0/0:51,0:51:99:0,138,1684 0/0:48,0:48:99:0,114,1411 0/0:14,0:14:42.10:0,42,465 0/0:28,0:28:69.17:0,69,778 0/0:12,0:12:36.06:0,36,371 0/0:16,0:16:48.12:0,48,517 0/0:20,1:21:26.44:0,26,510 0/0:27,0:27:75.21:0,75,847 0/0:66,0:66:99:0,171,1905 0/0:10,0:10:27.03:0,27,278 0/0:18,0:18:54.14:0,54,603 0/0:27,0:27:69.18:0,69,788 0/0:30,0:30:87.21:0,87,943 0/0:40,0:40:99:0,99,1118 0/1:25,25:50:99:754,0,577 1/1:1,39:40:93.24:1107,93,0 0/0:105,0:105:99:0,244,3124 0/0:51,0:51:99:0,123,1544 0/1:39,21:60:99:434,0,934 0/0:72,0:72:99:0,172,2164 0/0:14,0:14:33.09:0,33,378 0/0:20,0:20:51.14:0,51,595 0/0:18,0:18:42.12:0,42,512 0/1:5,8:13:94.55:245,0,95 0/0:17,0:17:45.12:0,45,503 0/0:40,0:40:99:0,108,1202 0/1:14,9:23:99:207,0,318 0/0:21,0:21:51.13:0,51,581 0/0:13,0:14:36.07:0,36,389 0/0:18,0:18:48.13:0,48,543 0/0:32,0:32:87.21:0,87,985 0/0:29,0:29:84.21:0,84,928 0/0:16,0:16:48.13:0,48,530 1/1:0,23:24:63.18:757,63,0 0/1:2,20:22:8.05:608,0,8 0/1:7,10:17:99:274,0,182 19 8326904 . G A 21039.56 . AC=71;AF=0.845;AN=84;BaseQRankSum=-8.287;DP=767;Dels=0.00;FS=0.605;HRun=0;HaplotypeScore=0.7894;InbreedingCoeff=0.3428;MQ=58.19;MQ0=0;MQRankSum=2.290;QD=29.10;ReadPosRankSum=1.961 GT:AD:DP:GQ:PL 0/1:7,8:15:99:221,0,189 0/1:7,4:11:99:103,0,228 1/1:0,10:10:30.08:341,30,0 1/1:0,62:62:99:1979,174,0 1/1:1,43:45:87.18:1307,87,0 1/1:0,26:26:72.22:876,72,0 1/1:1,24:25:66.16:741,66,0 1/1:0,29:29:84.22:946,84,0 1/1:0,5:5:15.04:172,15,0 1/1:0,18:18:48.11:525,48,0 1/1:0,5:5:12.04:141,12,0 1/1:0,8:8:24.06:267,24,0 1/1:2,12:14:2.10:356,2,0 1/1:0,7:7:21.05:231,21,0 1/1:0,37:37:99:1196,102,0 1/1:0,9:9:24.07:278,24,0 1/1:0,9:9:24.07:273,24,0 1/1:0,12:12:36.10:406,36,0 1/1:0,14:15:39.10:447,39,0 1/1:0,30:31:75.20:878,75,0 0/1:5,11:16:99:312,0,116 0/0:22,0:22:57.17:0,57,709 1/1:0,65:65:99:2072,186,0 1/1:0,31:32:90.27:1071,90,0 0/1:14,25:40:99:703,0,361 1/1:1,41:42:99:1344,117,0 1/1:0,10:10:30.08:342,30,0 1/1:1,9:10:27.06:303,27,0 1/1:0,10:10:30.09:349,30,0 0/1:1,3:4:17.59:97,0,18 1/1:0,7:7:21.06:244,21,0 1/1:0,20:20:51.13:594,51,0 0/1:8,2:10:42.52:43,0,242 1/1:0,10:10:27.08:326,27,0 1/1:0,8:9:24.05:263,24,0 1/1:0,6:6:18.05:212,18,0 1/1:0,10:10:27.08:331,27,0 1/1:0,13:13:39.11:452,39,0 1/1:0,9:9:24.07:284,24,0 0/0:12,0:12:27.08:0,27,342 0/1:6,1:7:13.29:13,0,200 0/0:10,0:10:30.08:0,30,358 19 8326944 . G A 1249.98 . AC=12;AF=0.146;AN=82;BaseQRankSum=-2.268;DP=420;Dels=0.00;FS=1.902;HRun=0;HaplotypeScore=0.4163;InbreedingCoeff=0.3167;MQ=58.30;MQ0=0;MQRankSum=1.265;QD=17.36;ReadPosRankSum=-0.091 GT:AD:DP:GQ:PL 0/1:4,3:7:85.30:85,0,118 0/1:2,1:3:18.64:19,0,68 0/0:5,0:5:15.02:0,15,155 0/0:29,0:29:84.27:0,84,1082 0/0:29,0:29:81.24:0,81,1018 0/0:24,0:24:63.19:0,63,822 0/0:18,0:18:51.16:0,51,662 0/0:20,0:20:57.16:0,57,686 0/0:4,0:4:12.04:0,12,145 0/0:8,0:8:21.06:0,21,245 0/0:2,0:2:3.01:0,3,32 0/0:5,0:5:15.04:0,15,178 0/0:5,0:5:15.04:0,15,174 0/0:10,0:10:30.09:0,30,357 0/0:22,0:22:54.14:0,54,647 0/0:8,0:8:21.06:0,21,252 0/0:6,0:6:15.04:0,15,173 0/0:1,0:1:3.01:0,3,36 0/0:6,0:6:18.05:0,18,207 0/0:17,0:17:42.13:0,42,524 0/1:6,3:9:83.76:84,0,191 1/1:0,10:10:30.09:367,30,0 0/0:24,1:25:45.61:0,46,903 0/0:16,0:16:45.14:0,45,560 0/1:11,6:17:99:179,0,354 0/0:23,0:23:66.21:0,66,879 0/0:2,0:2:6.02:0,6,69 0/0:7,0:7:21.05:0,21,231 0/0:6,0:6:18.05:0,18,204 0/0:4,0:4:12.04:0,12,148 0/0:8,0:8:21.06:0,21,256 0/0:10,0:10:30.06:0,30,345 0/1:1,6:7:18.92:178,0,19 0/0:7,0:7:21.06:0,21,258 0/0:6,0:6:12.03:0,12,134 ./. 0/0:7,0:7:21.06:0,21,238 0/0:7,0:7:21.07:0,21,262 0/0:1,0:1:3.01:0,3,34 1/1:0,6:6:18.03:206,18,0 1/1:0,4:4:9.03:119,9,0 0/1:3,6:9:88.35:167,0,88 19 8367359 . G C 9847.11 . AC=11;AF=0.131;AN=84;BaseQRankSum=-15.596;DP=3006;Dels=0.00;FS=4.829;HRun=0;HaplotypeScore=2.2661;InbreedingCoeff=0.2677;MQ=59.33;MQ0=0;MQRankSum=-1.573;QD=13.83;ReadPosRankSum=-2.096 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1444,129,0 1/1:0,31:32:84.22:962,84,0 0/1:19,6:25:99:141,0,592 0/0:183,0:183:99:0,481,6321 0/1:62,81:143:99:2243,0,1947 0/0:99,0:99:99:0,283,3749 0/0:97,0:97:99:0,259,3436 0/1:52,43:95:99:1156,0,1613 0/0:51,0:51:99:0,147,1843 0/0:45,0:45:99:0,120,1518 0/0:41,0:41:99:0,114,1443 0/0:49,0:50:99:0,132,1640 0/0:62,0:62:99:0,159,2042 0/0:35,0:35:99:0,105,1326 0/0:149,0:149:99:0,397,4926 0/0:48,0:48:99:0,132,1651 0/0:37,0:37:99:0,99,1247 0/0:38,0:38:99:0,105,1319 0/1:42,34:77:99:915,0,1196 0/1:71,53:124:99:1264,0,1953 0/0:108,0:108:99:0,304,3780 0/0:83,0:83:99:0,223,2795 0/0:170,0:170:99:0,470,6258 0/1:47,28:76:99:768,0,1419 0/0:106,0:106:99:0,286,3816 0/1:54,38:94:99:953,0,1753 0/0:36,0:36:99:0,99,1243 0/0:40,0:40:99:0,111,1379 0/0:44,0:44:99:0,117,1521 0/0:57,0:57:99:0,147,1864 0/0:42,0:42:99:0,120,1504 0/0:120,0:120:99:0,316,3963 0/0:71,0:71:99:0,187,2320 0/0:37,0:38:96.28:0,96,1187 0/0:45,0:45:99:0,132,1594 0/0:64,0:64:99:0,175,2189 0/0:87,0:87:99:0,241,3025 0/0:43,0:43:99:0,120,1516 0/0:56,0:56:99:0,144,1832 0/0:42,0:42:99:0,111,1392 0/0:49,0:49:99:0,141,1771 0/0:58,0:58:99:0,162,2074 19 8389405 . G A 2693.79 . 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G A 176.98 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.881;DP=981;Dels=0.00;FS=10.385;HRun=1;HaplotypeScore=0.9175;InbreedingCoeff=-0.0123;MQ=58.77;MQ0=0;MQRankSum=0.668;QD=8.85;ReadPosRankSum=-0.083 GT:AD:DP:GQ:PL 0/0:20,0:20:57.14:0,57,624 0/0:6,0:6:18.04:0,18,192 0/0:14,0:14:42.11:0,42,466 0/0:46,0:46:99:0,126,1520 0/0:44,0:44:99:0,132,1526 0/0:31,0:31:93.27:0,93,1104 0/0:20,0:20:57.14:0,57,633 0/0:30,0:30:84.24:0,84,994 0/0:14,0:14:42.11:0,42,461 0/0:12,0:12:30.07:0,30,327 0/0:16,0:17:45.12:0,45,502 0/0:19,0:19:57.14:0,57,611 0/0:13,0:13:39.07:0,39,404 0/1:12,8:20:99:223,0,305 0/0:59,0:59:99:0,165,1834 0/0:23,0:23:57.14:0,57,633 0/0:20,0:20:57.12:0,57,637 0/0:15,0:15:45.10:0,45,494 0/0:27,0:27:81.17:0,81,861 0/0:54,0:54:99:0,159,1753 0/0:29,0:29:81.19:0,81,864 0/0:21,0:22:54.13:0,54,580 0/0:53,0:53:99:0,153,1850 0/0:26,0:26:72.18:0,72,825 0/0:24,0:24:66.17:0,66,756 0/0:20,0:20:57.17:0,57,689 0/0:14,0:14:39.09:0,39,410 0/0:18,0:18:54.12:0,54,570 0/0:23,0:23:63.16:0,63,708 0/0:9,0:9:27.07:0,27,304 0/0:13,0:13:36.09:0,36,385 0/0:29,0:29:78.16:0,78,859 0/0:25,0:25:75.20:0,75,828 0/0:10,0:10:30.07:0,30,327 0/0:16,0:16:48.12:0,48,518 0/0:14,0:14:39.09:0,39,416 0/0:38,0:39:99:0,108,1175 0/0:20,0:20:60.15:0,60,643 0/0:17,0:17:51.13:0,51,547 0/0:16,0:16:45.08:0,45,478 0/0:21,0:21:60.16:0,60,664 0/0:19,0:19:57.15:0,57,632 19 8389520 . C T 8981.41 . AC=14;AF=0.167;AN=84;BaseQRankSum=-12.728;DP=2444;Dels=0.00;FS=2.050;HRun=0;HaplotypeScore=1.8240;InbreedingCoeff=-0.0286;MQ=58.97;MQ0=0;MQRankSum=-0.361;QD=14.65;ReadPosRankSum=-3.509 GT:AD:DP:GQ:PL 0/0:36,0:36:87.25:0,87,1101 0/0:44,0:44:99:0,117,1487 0/0:32,0:32:90.25:0,90,1097 0/0:146,0:146:99:0,388,5086 0/0:137,0:137:99:0,373,4891 0/0:92,0:92:99:0,244,3198 0/1:46,35:81:99:910,0,1315 0/0:84,0:84:99:0,223,2964 0/1:12,17:29:99:485,0,323 0/1:18,11:29:99:263,0,430 0/0:30,0:30:87.27:0,87,1101 0/0:38,0:38:99:0,105,1296 0/1:17,16:33:99:447,0,516 0/0:37,0:37:99:0,105,1310 0/1:53,51:104:99:1363,0,1530 0/1:15,17:32:99:519,0,366 0/0:31,0:31:78.23:0,78,982 0/0:28,0:28:78.25:0,78,1001 0/0:60,0:62:99:0,159,1984 0/0:113,0:113:99:0,283,3587 0/0:83,0:83:99:0,223,2797 0/0:59,1:60:99:0,129,2019 0/0:140,0:140:99:0,361,4822 0/0:70,0:70:99:0,184,2399 0/0:90,0:91:99:0,256,3361 0/0:91,0:91:99:0,235,3061 0/0:31,0:31:90.25:0,90,1119 0/0:44,0:44:99:0,123,1538 0/0:42,0:42:99:0,111,1448 0/1:21,22:43:99:619,0,637 0/1:12,21:33:99:594,0,321 0/0:85,0:85:99:0,220,2783 0/1:23,20:43:99:502,0,655 0/0:32,0:32:90.27:0,90,1122 0/0:34,0:35:99:0,99,1230 0/0:32,0:32:87.26:0,87,1095 0/1:45,30:75:99:766,0,1354 0/0:42,0:42:99:0,117,1484 1/1:0,40:40:99:1435,120,0 0/1:19,23:42:99:669,0,587 0/1:14,15:29:99:411,0,441 0/0:41,0:42:99:0,108,1353 19 8431155 . G A 697.29 . 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G A 8589.64 . 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C T 97683.43 . 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G A 537.36 . 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C T 21692 . 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G A 4822.88 . 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C T 3024.61 . 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C T 9610.48 . 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T TG 113.17 . 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C G 10.13 . 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G T 355.59 . 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G A 19324.56 . 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G T 1537.39 . 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G C 13.72 . 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T A 435.34 . AC=4;AF=0.048;AN=84;BaseQRankSum=8.019;DP=7126;DS;Dels=0.00;FS=130.554;HRun=0;HaplotypeScore=6.5482;InbreedingCoeff=-0.0584;MQ=57.90;MQ0=39;MQRankSum=-32.013;QD=0.68;ReadPosRankSum=5.326 GT:AD:DP:GQ:PL 0/0:167,4:172:99:0,375,5367 0/0:132,8:140:99:0,184,4126 0/0:124,7:131:99:0,264,3914 0/0:188,4:192:99:0,393,5848 0/0:173,2:175:99:0,392,5330 0/0:141,7:150:99:0,238,4424 0/0:133,3:137:99:0,261,4191 0/0:142,4:146:99:0,251,4276 0/0:168,9:178:99:0,293,5192 0/0:149,10:159:99:0,157,4493 0/0:150,13:163:75.87:0,76,4500 0/1:122,20:142:99:142,0,3633 0/0:122,8:130:99:0,212,3837 0/0:129,19:150:2.02:2,0,3904 0/0:240,4:244:99:0,548,7547 0/0:121,8:130:91.38:0,91,3738 0/0:160,15:176:79.83:0,80,4629 0/0:132,1:133:99:0,349,4286 0/0:230,20:250:99:0,111,6794 0/0:226,15:242:99:0,161,6516 0/0:225,16:243:99:0,237,6749 0/0:182,22:205:22.91:0,23,5156 0/0:182,5:189:99:0,339,5729 0/0:140,3:144:99:0,250,4205 0/0:155,0:156:99:0,388,4927 0/0:130,6:136:99:0,203,4134 0/1:115,18:133:99:219,0,3278 0/0:143,7:150:99:0,209,4458 0/0:134,12:146:99:0,135,4094 0/1:160,18:180:64.51:65,0,4881 0/0:145,15:161:33.05:0,33,4296 0/0:231,15:247:99:0,266,6884 0/1:161,22:183:95.34:95,0,4692 0/0:140,7:147:99:0,234,4546 0/0:148,12:161:90.80:0,91,4522 0/0:159,12:171:99:0,195,4949 0/0:239,11:250:99:0,375,7235 0/0:155,8:164:99:0,211,4706 0/0:162,9:172:99:0,184,5068 0/0:143,6:150:99:0,264,4679 0/0:119,15:136:38.93:0,39,3628 0/0:152,9:162:99:0,270,4897 19 9020829 . C T 62.09 . AC=3;AF=0.036;AN=84;BaseQRankSum=-13.146;DP=6520;DS;Dels=0.00;FS=277.886;HRun=0;HaplotypeScore=5.4908;InbreedingCoeff=-0.0369;MQ=58.31;MQ0=22;MQRankSum=-26.999;QD=0.17;ReadPosRankSum=-17.649 GT:AD:DP:GQ:PL 0/0:134,1:135:99:0,348,4673 0/0:128,6:134:99:0,224,4259 0/0:114,3:117:99:0,274,3922 0/0:176,4:180:99:0,337,5962 0/0:143,2:145:99:0,344,5091 0/0:129,7:136:99:0,229,4587 0/0:114,2:116:99:0,244,3952 0/0:146,5:151:99:0,235,4687 0/0:165,7:172:99:0,377,5677 0/0:133,6:139:99:0,202,4325 0/0:136,10:147:99:0,142,4610 0/1:113,16:130:83.18:83,0,3669 0/0:122,5:127:99:0,249,4140 0/1:116,16:133:34.40:34,0,3808 0/0:242,6:250:99:0,519,8226 0/0:113,6:119:99:0,129,3794 0/0:157,10:168:99:0,193,4966 0/0:106,0:106:99:0,298,3788 0/0:216,15:231:99:0,164,6546 0/0:200,10:211:99:0,257,6360 0/0:231,11:243:99:0,375,7368 0/0:176,18:194:55.35:0,55,5404 0/0:176,5:181:99:0,336,6362 0/0:119,2:121:99:0,254,4185 0/0:140,1:142:99:0,361,4971 0/0:121,5:126:99:0,179,4187 0/1:102,9:111:18.99:19,0,3085 0/0:140,5:145:99:0,271,4668 0/0:125,8:134:99:0,202,4193 0/0:148,12:160:99:0,101,4921 0/0:137,6:143:99:0,216,4809 0/0:198,10:209:99:0,237,6245 0/0:160,16:176:29.28:0,29,5021 0/0:136,3:139:99:0,328,4752 0/0:129,5:134:99:0,209,4451 0/0:159,8:167:99:0,307,5549 0/0:208,7:215:99:0,406,6922 0/0:149,6:156:99:0,283,5026 0/0:145,6:151:99:0,218,4928 0/0:144,3:147:99:0,295,4894 0/0:125,9:134:99:0,213,4322 0/0:140,5:145:99:0,304,4864 19 9021175 . G C 617.32 . AC=10;AF=0.119;AN=84;BaseQRankSum=-24.336;DP=5652;DS;Dels=0.00;FS=940.162;HRun=1;HaplotypeScore=3.3955;InbreedingCoeff=-0.1416;MQ=58.35;MQ0=4;MQRankSum=5.605;QD=0.43;ReadPosRankSum=-15.107 GT:AD:DP:GQ:PL 0/1:55,38:93:9.26:9,0,994 0/0:79,32:111:99:0,141,1944 0/0:81,42:124:54.74:0,55,1682 0/0:121,62:183:99:0,220,3225 0/0:78,54:132:64.62:0,65,1923 0/0:91,41:132:99:0,127,2329 0/0:77,26:103:99:0,156,2087 0/0:106,41:147:99:0,125,2477 0/0:72,31:103:99:0,130,1903 0/1:71,48:119:15.21:15,0,1820 0/0:86,34:120:53.20:0,53,1818 0/0:85,31:117:99:0,128,2301 0/0:60,35:95:43.37:0,43,1391 0/0:70,34:105:99:0,99,1697 0/1:125,123:250:99:213,0,2236 0/0:72,52:124:99:0,108,1580 0/0:88,40:128:99:0,122,1944 0/1:76,47:124:85:85,0,1499 0/1:110,63:176:63.55:64,0,2515 0/0:165,58:223:99:0,167,3457 0/0:131,62:196:65.70:0,66,3364 0/0:93,59:153:37.39:0,37,1850 0/1:112,67:179:36.12:36,0,2555 0/0:108,46:156:99:0,189,2872 0/0:79,58:137:19.78:0,20,1872 0/0:74,34:108:99:0,108,1685 0/0:44,23:67:12.20:0,12,846 0/0:79,50:129:69.76:0,70,1706 0/0:63,33:96:99:0,113,1642 0/0:78,55:133:1.57:0,2,1945 0/0:77,37:114:10.34:0,10,1568 0/0:163,49:212:99:0,271,3565 0/0:89,47:136:99:0,115,1981 0/0:73,36:109:99:0,112,1592 0/1:79,35:114:72.20:72,0,1634 0/1:67,47:114:61.60:62,0,1315 0/1:80,76:157:99:171,0,1801 0/0:100,36:136:99:0,213,2485 0/0:88,46:136:86.77:0,87,1906 0/0:81,51:133:35.13:0,35,1761 0/1:57,43:100:21.36:21,0,1326 0/0:83,44:127:42.50:0,43,1708 19 9028373 . G A 21149.92 . AC=12;AF=0.143;AN=84;BaseQRankSum=0.075;DP=5227;DS;Dels=0.00;FS=14.303;HRun=0;HaplotypeScore=8.1161;InbreedingCoeff=-0.1667;MQ=58.44;MQ0=0;MQRankSum=4.628;QD=12.71;ReadPosRankSum=5.172 GT:AD:DP:GQ:PL 0/1:62,62:124:99:1784,0,1601 0/1:52,50:102:99:1422,0,1281 0/0:96,0:96:99:0,271,3142 0/1:128,109:237:99:2996,0,3776 0/0:190,0:190:99:0,506,6555 0/1:92,86:178:99:2371,0,2518 0/0:131,0:131:99:0,352,4544 0/1:75,73:148:99:1999,0,2107 0/0:77,0:77:99:0,226,2638 0/1:41,41:82:99:1125,0,1025 0/1:53,36:89:99:1008,0,1486 0/0:102,0:102:99:0,289,3399 0/0:80,0:80:99:0,223,2603 0/0:94,0:94:99:0,268,3129 0/0:243,0:243:99:0,662,7726 0/0:109,0:109:99:0,313,3657 0/0:104,1:106:99:0,280,3313 0/0:79,0:79:99:0,220,2578 0/0:169,0:170:99:0,463,5453 0/0:182,0:184:99:0,499,5882 0/0:133,0:133:99:0,355,4260 0/0:120,4:124:99:0,223,3838 0/1:118,101:219:99:2764,0,3572 0/0:111,0:111:99:0,307,3935 0/1:89,63:152:99:1622,0,2575 0/0:113,1:114:99:0,270,3770 0/0:81,0:81:99:0,226,2684 0/0:82,0:82:99:0,241,2732 0/0:85,0:85:99:0,247,2879 0/0:112,0:112:99:0,325,3825 0/0:86,1:87:99:0,220,2906 0/0:185,0:185:99:0,484,5753 0/0:122,0:122:99:0,343,4043 0/1:62,52:114:99:1432,0,1775 0/0:107,1:108:99:0,258,3440 0/1:57,49:107:99:1349,0,1518 0/0:157,0:157:99:0,409,4718 0/0:99,0:99:99:0,277,3254 0/1:66,46:112:99:1278,0,1847 0/0:105,0:106:99:0,295,3482 0/0:91,1:92:99:0,222,2919 0/0:103,0:103:99:0,301,3524 19 9033661 . C A 2202.73 . AC=28;AF=0.333;AN=84;BaseQRankSum=-20.614;DP=4881;DS;Dels=0.00;FS=79.889;HRun=0;HaplotypeScore=2.4769;InbreedingCoeff=-0.4983;MQ=55.56;MQ0=128;MQRankSum=-37.098;QD=0.72;ReadPosRankSum=0.824 GT:AD:DP:GQ:PL 0/1:101,20:121:99:117,0,3070 0/1:99,16:115:80.56:81,0,3125 0/1:83,19:102:99:139,0,2518 0/0:121,7:128:99:0,172,4060 0/0:89,11:100:31.25:0,31,2948 0/0:94,6:100:87.26:0,87,2993 0/0:58,14:72:3.46:0,3,1914 0/0:54,6:60:7.33:0,7,1737 0/1:77,19:96:66.47:66,0,2379 0/1:78,19:97:33.11:33,0,2411 0/1:87,24:111:99:156,0,2696 0/1:82,25:107:99:255,0,2511 0/0:83,12:95:94.92:0,95,2628 0/1:92,13:105:65.05:65,0,2915 0/0:233,17:250:99:0,366,7319 0/1:92,16:110:34.08:34,0,2823 0/0:92,9:102:99:0,142,3100 0/1:77,17:94:99:106,0,2444 0/0:182,18:200:99:0,164,5520 0/1:175,21:196:10.53:11,0,5026 0/1:147,24:171:13.28:13,0,4593 0/0:113,17:130:5.36:0,5,3542 0/0:118,10:128:99:0,167,3956 0/1:65,13:78:77.46:77,0,2001 0/1:99,12:111:2.37:2,0,2963 0/1:88,14:102:80.68:81,0,2679 0/1:71,13:85:53.74:54,0,2173 0/1:104,27:131:99:185,0,3281 0/1:66,11:77:74.25:74,0,2089 0/1:97,28:125:99:152,0,2935 0/0:88,15:103:14.24:0,14,2858 0/0:161,18:179:81.66:0,82,4992 0/1:102,15:117:7.27:7,0,3218 0/1:87,18:105:11.86:12,0,2769 0/1:80,25:105:99:232,0,2418 0/1:82,21:103:38.93:39,0,2491 0/0:157,22:179:99:0,100,4659 0/1:87,16:103:99:110,0,2644 0/1:75,21:96:99:124,0,2493 0/1:79,17:96:58.93:59,0,2382 0/1:91,15:106:81.22:81,0,2749 0/1:77,12:90:10.53:11,0,2497 19 9033676 . G A 1658.60 . 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G A 1535.49 . AC=22;AF=0.262;AN=84;BaseQRankSum=-14.087;DP=5270;DS;Dels=0.00;FS=16.824;HRun=0;HaplotypeScore=2.9428;InbreedingCoeff=-0.3641;MQ=55.65;MQ0=140;MQRankSum=-36.378;QD=0.57;ReadPosRankSum=0.405 GT:AD:DP:GQ:PL 0/1:114,19:133:99:108,0,3268 0/1:112,16:128:60.30:60,0,3300 0/1:79,19:98:99:130,0,2492 0/0:125,7:132:99:0,163,4043 0/0:81,11:92:6.04:0,6,2725 0/0:93,7:100:99:0,101,3184 0/0:67,12:79:28.15:0,28,2226 0/0:66,6:74:33.97:0,34,2120 0/1:95,18:114:12.74:13,0,2844 0/0:96,18:114:22.24:0,22,3053 0/1:99,23:122:99:124,0,3027 0/1:88,24:112:99:235,0,2638 0/0:94,11:105:99:0,129,2918 0/1:113,13:126:27.11:27,0,3439 0/0:230,15:245:99:0,428,7529 0/0:96,16:112:2.85:0,0,3078 0/0:113,9:122:99:0,159,3514 0/1:104,17:121:46.27:46,0,3058 0/0:177,14:193:99:0,149,5440 0/1:175,21:196:6.30:6,0,4994 0/1:170,24:195:14.34:14,0,4965 0/0:125,15:140:51.57:0,52,3876 0/0:102,9:111:99:0,129,3443 0/1:63,14:77:99:114,0,1863 0/1:92,15:108:33.79:34,0,2840 0/1:89,13:102:42.31:42,0,2888 0/1:82,14:96:46.48:46,0,2469 0/1:106,26:132:99:181,0,3311 0/1:90,11:101:25.13:25,0,2787 0/1:98,27:125:99:130,0,2993 0/0:88,13:101:25.15:0,25,2842 0/0:172,19:191:94.54:0,95,5237 0/0:116,16:132:21.54:0,22,3682 0/0:99,17:116:17.47:0,17,3187 0/1:96,23:119:99:150,0,2981 0/0:106,19:125:27.81:0,28,3354 0/0:176,21:198:99:0,120,5047 0/1:86,17:103:99:109,0,2608 0/1:101,20:121:65.23:65,0,2995 0/1:102,16:118:12.70:13,0,2998 0/1:109,15:125:33.80:34,0,3286 0/0:104,12:116:49.72:0,50,3242 19 9408658 . G A 8446.34 . AC=7;AF=0.083;AN=84;BaseQRankSum=-21.951;DP=3293;DS;Dels=0.00;FS=3.681;HRun=1;HaplotypeScore=3.5939;InbreedingCoeff=-0.0909;MQ=59.41;MQ0=0;MQRankSum=0.015;QD=14.24;ReadPosRankSum=0.546 GT:AD:DP:GQ:PL 0/1:28,27:55:99:787,0,872 0/0:52,0:52:99:0,138,1733 0/0:65,0:65:99:0,184,2292 0/0:143,0:143:99:0,385,5173 0/0:110,0:110:99:0,298,4014 0/0:84,0:84:99:0,226,3060 0/0:93,1:94:99:0,262,3505 0/0:95,0:95:99:0,262,3502 0/1:27,36:63:99:1022,0,785 0/0:54,0:54:99:0,144,1820 0/1:26,33:59:99:945,0,773 0/0:70,0:70:99:0,190,2406 0/0:61,0:61:99:0,168,2089 0/0:69,0:69:99:0,190,2378 0/1:113,107:221:99:2873,0,3096 0/0:63,0:63:99:0,178,2200 0/1:30,38:68:99:1096,0,899 0/0:53,0:53:99:0,156,1932 0/0:93,0:93:99:0,262,3276 0/0:110,0:110:99:0,289,3707 0/0:107,0:107:99:0,289,3682 0/0:71,0:71:99:0,202,2514 0/0:147,0:147:99:0,412,5596 0/0:101,0:101:99:0,286,3825 0/0:92,0:92:99:0,262,3556 0/0:76,0:77:99:0,205,2773 0/0:56,0:57:99:0,144,1845 0/0:53,1:54:99:0,126,1874 0/0:50,0:50:99:0,144,1826 0/0:62,0:62:99:0,175,2163 0/0:48,0:48:99:0,132,1697 0/0:99,0:99:99:0,265,3396 0/0:80,0:80:99:0,223,2820 0/1:36,25:61:99:712,0,1117 0/0:67,1:68:99:0,162,2360 0/1:30,36:66:99:1010,0,851 0/0:105,0:105:99:0,283,3513 0/0:52,0:52:99:0,150,1836 0/0:64,0:64:99:0,184,2293 0/0:54,0:54:99:0,156,1937 0/0:49,0:49:99:0,123,1594 0/0:47,0:47:99:0,132,1658 19 9413152 . A C 376.80 . AC=2;AF=0.024;AN=84;BaseQRankSum=-40.620;DP=4851;DS;Dels=0.00;FS=498.696;HRun=2;HaplotypeScore=8.3128;InbreedingCoeff=-0.0244;MQ=59.40;MQ0=2;MQRankSum=-0.032;QD=1.54;ReadPosRankSum=-15.863 GT:AD:DP:GQ:PL 0/0:87,29:116:99:0,136,2533 0/0:83,16:100:99:0,220,2491 0/0:76,20:96:99:0,164,2332 0/0:101,48:149:99:0,164,2825 0/0:88,40:128:99:0,234,2690 0/0:107,36:143:99:0,238,3129 0/0:102,33:135:99:0,198,2871 0/0:77,23:100:99:0,155,2263 0/0:91,17:109:99:0,169,2672 0/0:68,20:88:99:0,122,1962 0/0:66,27:93:89.78:0,90,1958 0/0:66,21:87:99:0,127,1921 0/0:74,17:91:99:0,119,2166 0/0:86,32:119:99:0,202,2598 0/0:172,78:250:99:0,272,4880 0/0:64,22:86:99:0,104,1868 0/0:77,19:96:99:0,156,2313 0/0:84,37:123:99:0,131,2432 0/1:81,51:132:99:183,0,2215 0/0:134,29:163:99:0,298,4056 0/0:95,40:135:81.20:0,81,2737 0/0:73,30:103:99:0,144,2092 0/0:110,47:157:99:0,201,3087 0/0:94,21:115:99:0,231,2786 0/0:86,21:108:99:0,119,2544 0/0:94,29:123:99:0,188,2744 0/0:64,24:88:69.07:0,69,1908 0/0:94,30:124:99:0,214,2919 0/0:73,35:108:99:0,130,2192 0/0:104,28:132:99:0,269,3264 0/0:65,23:88:99:0,148,1997 0/0:106,22:128:99:0,268,3324 0/0:76,21:97:99:0,183,2271 0/0:60,25:85:99:0,140,1812 0/0:72,21:94:99:0,145,2182 0/0:105,28:133:99:0,181,3061 0/1:75,36:112:99:256,0,2177 0/0:88,23:111:97.21:0,97,2647 0/0:79,22:101:99:0,194,2430 0/0:82,24:106:62.14:0,62,2418 0/0:74,28:102:99:0,112,2204 0/0:70,27:97:42.59:0,43,1906 19 9874056 . A C 442.77 . AC=3;AF=0.036;AN=84;BaseQRankSum=-47.551;DP=7040;DS;Dels=0.00;FS=1132.975;HRun=2;HaplotypeScore=5.3690;InbreedingCoeff=-0.0371;MQ=59.40;MQ0=1;MQRankSum=2.672;QD=0.66;ReadPosRankSum=-26.477 GT:AD:DP:GQ:PL 0/0:105,19:124:99:0,276,3367 0/0:108,42:150:99:0,206,3349 0/0:87,41:128:99:0,124,2623 0/0:178,72:250:99:0,327,5466 0/0:172,63:235:99:0,352,5380 0/0:158,55:213:99:0,308,4836 0/0:157,46:203:99:0,305,4694 0/0:156,53:209:99:0,381,4890 0/0:112,38:151:99:0,197,3475 0/0:121,40:163:99:0,201,3706 0/0:125,33:158:99:0,210,3788 0/0:105,29:134:99:0,229,3279 0/0:100,25:125:99:0,157,2860 0/0:100,31:131:99:0,177,3023 0/1:131,119:250:99:209,0,3476 0/0:82,28:110:99:0,122,2421 0/0:120,29:150:99:0,330,3825 0/0:107,37:144:99:0,167,3095 0/1:142,65:207:99:186,0,4064 0/0:198,38:236:99:0,517,6164 0/1:147,69:216:99:123,0,4074 0/0:118,28:146:99:0,263,3743 0/0:173,77:250:99:0,354,5321 0/0:137,36:173:99:0,295,4007 0/0:178,56:234:99:0,410,5568 0/0:147,38:186:99:0,293,4497 0/0:98,31:130:65.49:0,65,2825 0/0:93,40:133:99:0,152,2827 0/0:107,33:140:99:0,235,3203 0/0:111,26:137:99:0,261,3295 0/0:88,39:128:68.07:0,68,2564 0/0:210,40:250:99:0,491,6361 0/0:113,36:149:99:0,273,3548 0/0:101,42:143:99:0,189,3198 0/0:104,43:148:81.91:0,82,3126 0/0:112,34:146:99:0,186,3408 0/0:126,54:180:25.07:0,25,3625 0/0:108,38:147:99:0,145,3164 0/0:104,40:144:99:0,148,3135 0/0:93,27:120:99:0,223,2831 0/0:94,32:127:99:0,160,2703 0/0:102,38:140:99:0,181,3049 19 9929267 . A C 30.23 . AC=7;AF=0.090;AN=78;BaseQRankSum=-5.708;DP=187;Dels=0.00;FS=71.310;HRun=2;HaplotypeScore=0.1861;InbreedingCoeff=-0.1570;MQ=57.17;MQ0=0;MQRankSum=0.170;QD=0.60;ReadPosRankSum=-4.457 GT:AD:DP:GQ:PL 0/1:2,2:4:19.62:20,0,64 0/0:3,0:3:9.01:0,9,88 0/0:1,1:2:3.01:0,3,33 0/0:2,2:4:6.02:0,6,73 0/0:3,1:4:8.61:0,9,75 0/0:1,0:1:3.01:0,3,31 0/0:1,1:2:3.01:0,3,38 ./. 0/1:1,2:3:20.67:21,0,31 0/0:3,1:4:9:0,9,92 0/0:5,0:5:12.04:0,12,147 0/0:6,3:9:18.03:0,18,182 0/0:2,1:3:6.02:0,6,74 0/0:6,1:7:18.05:0,18,208 0/1:10,11:21:29.39:29,0,293 0/0:6,1:7:18.03:0,18,197 0/0:2,1:3:3.01:0,3,36 0/0:4,0:4:12.04:0,12,144 0/1:4,3:7:16.62:17,0,92 0/0:3,1:4:9.03:0,9,111 0/0:3,1:4:9.03:0,9,107 0/1:2,2:4:21.57:22,0,57 0/0:2,0:2:6.02:0,6,74 0/1:1,2:3:1.76:0,2,6 0/0:2,2:4:3.01:0,3,33 ./. 0/0:1,1:2:3.01:0,3,36 0/0:4,2:6:12.04:0,12,146 ./. 0/0:6,2:8:16.84:0,17,158 0/0:2,0:2:6.02:0,6,70 0/0:4,1:5:12.02:0,12,127 0/0:7,3:10:14.63:0,15,145 0/0:5,2:7:12.02:0,12,135 0/0:3,0:3:3.01:0,3,38 0/0:2,1:3:5.99:0,6,52 0/0:3,2:5:9.03:0,9,110 0/0:1,2:3:3:0,3,28 0/0:3,1:4:2.98:0,3,22 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.01:0,6,66 0/1:6,2:8:17.78:18,0,169 19 9968434 . C T 27596.11 . AC=42;AF=0.500;AN=84;BaseQRankSum=9.320;DP=1830;Dels=0.00;FS=29.704;HRun=0;HaplotypeScore=1.1263;InbreedingCoeff=-0.1429;MQ=59.39;MQ0=0;MQRankSum=-0.332;QD=19.30;ReadPosRankSum=-0.053 GT:AD:DP:GQ:PL 0/1:25,11:36:99:280,0,663 1/1:0,39:39:99:1358,111,0 1/1:0,50:50:99:1655,138,0 0/1:48,57:105:99:1539,0,1246 0/0:75,0:75:99:0,214,2571 0/0:61,0:61:99:0,178,2092 0/1:28,18:46:99:529,0,824 0/0:65,0:66:99:0,181,2187 0/1:18,23:41:99:673,0,455 0/0:30,0:30:81.21:0,81,910 1/1:1,32:33:54.76:996,55,0 1/1:0,26:26:72.19:866,72,0 0/1:18,15:33:99:370,0,496 0/1:17,13:30:99:368,0,481 0/1:45,49:94:99:1372,0,1101 1/1:0,19:19:57.17:684,57,0 0/0:35,0:35:99:0,99,1091 0/1:17,12:29:99:337,0,492 0/1:31,24:55:99:653,0,844 1/1:0,58:58:99:1927,156,0 0/1:14,25:40:99:774,0,300 1/1:0,37:37:99:1338,111,0 0/1:53,41:94:99:1212,0,1605 0/1:35,31:66:99:943,0,858 1/1:0,66:66:99:2247,181,0 0/0:52,0:52:99:0,150,1783 0/1:11,16:27:99:506,0,282 0/1:12,19:31:99:549,0,331 0/1:14,15:29:99:407,0,312 0/1:10,22:32:99:698,0,202 1/1:0,40:40:99:1359,114,0 0/1:30,26:56:99:710,0,863 0/1:10,21:31:99:606,0,215 0/0:25,0:25:69.18:0,69,820 0/0:28,0:28:78.19:0,78,893 0/1:14,15:29:99:459,0,400 0/1:15,21:36:99:627,0,312 0/1:17,8:25:99:221,0,472 0/1:15,13:28:99:403,0,414 0/1:17,18:35:99:509,0,446 0/1:17,17:34:99:423,0,438 0/0:28,0:28:66.18:0,66,800 19 10076990 . G C 4253.51 . 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A AGG 472.52 . 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GTCTCTCCTCCCGCC G 44.89 . 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T G 923.22 . 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T C 172.88 . AC=10;AF=0.119;AN=84;BaseQRankSum=-9.875;DP=1734;Dels=0.02;FS=146.741;HRun=3;HaplotypeScore=9.5152;InbreedingCoeff=-0.1724;MQ=58.07;MQ0=2;MQRankSum=0.750;QD=0.37;ReadPosRankSum=-9.448 GT:AD:DP:GQ:PL 0/0:15,17:32:30.08:0,30,349 0/0:15,16:31:39.09:0,39,427 0/0:25,14:40:29.39:0,29,538 0/1:19,30:50:44.06:44,0,319 0/1:20,24:45:37.83:38,0,312 0/0:24,17:41:36.08:0,36,409 0/0:15,13:28:4.39:0,4,290 0/1:20,16:36:27.60:28,0,256 0/0:16,13:29:39.05:0,39,407 0/0:20,15:35:42.11:0,42,490 0/0:19,12:31:25.50:0,26,566 0/0:21,12:33:27.06:0,27,304 0/0:15,18:33:1.49:4,0,303 0/0:17,11:28:39.08:0,39,435 0/0:60,29:90:38.89:0,39,1350 0/0:20,23:43:17.46:0,17,470 0/0:15,15:30:24.96:0,25,277 0/0:17,18:35:11.04:0,11,421 0/1:34,24:59:27.36:27,0,773 0/0:61,20:81:99:0,108,1208 0/1:35,21:56:59.90:60,0,733 0/0:22,7:29:51.13:0,51,573 0/1:17,29:47:33.95:34,0,349 0/0:19,13:32:39.07:0,39,422 0/1:29,21:50:28.79:29,0,380 0/1:24,15:39:13.31:13,0,474 0/0:13,10:23:24.06:0,24,271 0/0:22,13:35:8.67:0,9,413 0/0:26,10:36:18.62:0,19,641 0/0:21,13:34:0.58:0,1,306 0/1:21,11:32:12.71:13,0,489 0/0:68,19:89:99:0,111,1546 0/0:35,26:62:66.15:0,66,750 0/0:14,17:32:15.01:0,15,156 0/0:8,15:23:9:0,9,93 0/0:21,17:38:31.46:0,31,580 0/0:26,14:40:2.65:0,3,639 0/0:20,16:36:33.06:0,33,361 0/0:17,17:34:42.11:0,42,485 0/0:20,15:35:39.05:0,39,416 0/1:24,13:37:14.10:14,0,407 0/0:17,15:32:3.40:0,3,292 19 10077053 . C T 349.93 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.722;DP=2246;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.3791;InbreedingCoeff=-0.0244;MQ=58.20;MQ0=1;MQRankSum=-0.094;QD=5.47;ReadPosRankSum=-1.680 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,126,1577 0/0:39,0:39:99:0,111,1383 0/0:43,0:43:99:0,129,1577 0/0:59,0:59:99:0,162,2104 0/0:54,0:54:99:0,156,2056 0/0:57,0:57:99:0,162,2083 0/0:38,0:38:99:0,114,1487 0/0:50,0:50:99:0,144,1849 0/0:48,0:48:99:0,141,1734 0/0:33,1:34:66.17:0,66,1164 0/0:41,0:41:99:0,117,1448 0/0:45,0:45:99:0,132,1606 0/0:41,0:41:99:0,111,1366 0/0:49,0:49:99:0,135,1649 0/0:128,0:129:99:0,358,4334 0/0:56,0:56:99:0,162,1981 0/0:33,0:33:99:0,99,1217 0/0:38,0:38:99:0,108,1331 0/0:99,0:99:99:0,262,3208 0/0:94,0:94:99:0,268,3347 0/0:72,0:73:99:0,217,2615 0/0:56,0:56:99:0,153,1893 0/0:66,0:66:99:0,193,2457 0/0:34,0:34:90.28:0,90,1191 0/0:57,0:57:99:0,159,2074 0/0:42,0:42:99:0,117,1517 0/0:31,0:31:90.28:0,90,1150 0/0:48,0:48:99:0,138,1696 0/0:43,0:43:99:0,108,1349 0/1:24,9:33:99:222,0,710 0/1:23,8:31:99:191,0,648 0/0:125,0:125:99:0,331,4202 0/0:60,0:60:99:0,169,2121 0/0:54,0:54:99:0,156,1886 0/0:36,0:36:99:0,102,1274 0/0:49,0:49:99:0,141,1756 0/0:85,0:85:99:0,238,2856 0/0:52,0:52:99:0,153,1879 0/0:43,0:43:99:0,126,1520 0/0:38,0:38:99:0,114,1399 0/0:41,0:41:99:0,117,1412 0/0:58,0:58:99:0,172,2102 19 10078024 . G C 79.74 . AC=2;AF=0.024;AN=82;BaseQRankSum=0.240;DP=157;Dels=0.00;FS=1.779;HRun=2;HaplotypeScore=0.2113;InbreedingCoeff=0.0850;MQ=58.78;MQ0=0;MQRankSum=-0.428;QD=4.69;ReadPosRankSum=0.202 GT:AD:DP:GQ:PL 0/0:4,0:4:9.02:0,9,94 0/0:2,0:2:3.01:0,3,45 0/0:1,0:1:3.01:0,3,39 0/0:13,0:13:30.09:0,30,386 0/0:1,0:1:3.01:0,3,41 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3:0,3,29 0/0:5,0:5:12.04:0,12,151 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.02:0,9,98 0/0:3,0:3:9.02:0,9,102 0/0:3,0:3:6.02:0,6,64 0/0:3,0:3:9.02:0,9,98 0/0:2,0:2:6.02:0,6,69 0/1:11,3:14:68.49:68,0,262 0/1:0,3:3:0.97:77,6,0 0/0:3,0:3:9.03:0,9,107 0/0:3,0:3:6.02:0,6,71 0/0:10,0:10:24.04:0,24,279 0/0:7,0:7:15.02:0,15,174 0/0:4,0:4:12:0,12,120 0/0:5,0:5:12.03:0,12,126 0/0:8,0:8:24.07:0,24,283 0/0:1,0:1:3.01:0,3,38 0/0:2,0:2:6.02:0,6,78 0/0:4,0:4:12.03:0,12,139 0/0:5,0:5:12.03:0,12,142 0/0:5,0:5:9.03:0,9,128 ./. 0/0:3,0:3:9.02:0,9,97 0/0:5,0:5:12.03:0,12,133 0/0:1,0:1:3.01:0,3,32 0/0:5,0:5:12.02:0,12,143 0/0:3,0:3:9.02:0,9,97 0/0:3,0:3:9.02:0,9,99 0/0:2,0:2:6.01:0,6,61 0/0:4,0:4:12.03:0,12,136 0/0:1,0:1:3.01:0,3,39 0/0:5,0:5:15.05:0,15,185 0/0:2,0:2:6.01:0,6,58 0/0:3,0:3:9.03:0,9,103 0/0:3,0:3:9.02:0,9,97 19 10079093 . C T 42176.48 . AC=19;AF=0.226;AN=84;BaseQRankSum=5.306;DP=6002;DS;Dels=0.00;FS=4.817;HRun=0;HaplotypeScore=3.5339;InbreedingCoeff=0.1158;MQ=59.38;MQ0=0;MQRankSum=-1.660;QD=17.03;ReadPosRankSum=2.227 GT:AD:DP:GQ:PL 0/0:91,0:91:99:0,250,2899 0/0:93,0:93:99:0,250,2972 0/0:75,1:76:99:0,159,2257 0/0:243,0:243:99:0,677,8299 0/1:128,111:240:99:3177,0,3753 0/0:227,0:227:99:0,581,7449 0/1:124,118:242:99:3119,0,3545 0/1:138,111:249:99:2969,0,3988 0/0:100,1:101:99:0,271,3201 0/1:27,45:72:99:1308,0,661 0/0:102,0:102:99:0,277,3229 0/1:54,48:102:99:1276,0,1368 0/1:29,42:71:99:1180,0,749 0/1:33,47:80:99:1318,0,799 0/0:250,0:250:99:0,674,7904 0/0:82,0:82:99:0,226,2624 0/0:112,0:112:99:0,307,3575 0/1:49,44:94:99:1065,0,1363 1/1:0,221:221:99:7193,584,0 1/1:0,233:233:99:7191,578,0 0/0:190,0:190:99:0,502,5941 0/1:56,78:134:99:2081,0,1355 0/0:222,0:222:99:0,632,7845 0/1:124,93:217:99:2480,0,3428 0/0:243,0:243:99:0,626,8093 0/1:151,87:238:99:2241,0,3970 0/0:86,1:87:99:0,187,2580 0/0:101,1:102:99:0,224,3038 0/0:77,0:77:99:0,199,2376 0/0:86,0:86:99:0,244,2815 0/0:80,0:80:99:0,223,2585 0/0:212,0:212:99:0,557,6663 0/0:151,1:152:99:0,366,4679 0/0:103,0:103:99:0,274,3210 0/0:89,0:89:99:0,250,2934 0/0:84,0:84:99:0,232,2738 0/0:216,0:216:99:0,569,6638 0/0:104,1:106:99:0,267,3306 0/1:54,52:106:99:1476,0,1435 0/1:43,45:88:99:1260,0,1221 1/1:2,87:89:99:2843,171,0 0/0:100,0:100:99:0,280,3294 19 10081322 . G A 390.89 . AC=8;AF=0.095;AN=84;BaseQRankSum=0.451;DP=238;Dels=0.00;FS=3.465;HRun=0;HaplotypeScore=0.2244;InbreedingCoeff=0.6068;MQ=58.29;MQ0=0;MQRankSum=0.675;QD=18.61;ReadPosRankSum=0.714 GT:AD:DP:GQ:PL 1/1:0,5:5:12.04:154,12,0 0/0:1,0:1:3.01:0,3,30 0/0:7,0:7:15.04:0,15,183 0/0:9,0:9:21.06:0,21,258 0/0:11,0:11:27.08:0,27,334 0/0:8,0:8:24.06:0,24,281 0/0:10,0:10:24.07:0,24,302 0/0:2,0:2:6.02:0,6,81 0/1:1,3:4:0.97:80,6,0 0/1:0,2:2:0.97:62,6,0 0/0:6,0:6:15.03:0,15,168 0/0:10,0:10:18.06:0,18,241 0/0:6,0:6:12.04:0,12,148 0/0:5,0:5:15.02:0,15,164 0/0:12,0:12:33.06:0,33,363 0/0:8,0:8:21.06:0,21,242 0/0:5,0:5:15.04:0,15,174 0/0:3,0:3:6.02:0,6,66 0/0:10,0:10:24.06:0,24,275 0/0:7,0:7:18.05:0,18,208 0/0:6,0:6:9.02:0,9,101 0/0:4,0:4:12.03:0,12,131 0/0:11,0:11:21.07:0,21,281 0/0:4,0:4:9.03:0,9,118 0/0:6,0:6:18.04:0,18,207 0/0:9,0:9:27.08:0,27,340 0/0:2,0:2:3.01:0,3,34 0/0:4,0:4:9.02:0,9,101 0/0:2,0:2:6.01:0,6,61 0/0:4,0:4:12.03:0,12,140 0/0:6,0:6:18.04:0,18,187 0/0:5,0:5:15.03:0,15,163 0/0:3,0:3:9.02:0,9,100 0/1:3,1:4:22.33:22,0,77 1/1:0,4:4:12.04:140,12,0 0/0:4,0:5:12.02:0,12,134 0/0:7,0:7:15.01:0,15,167 0/0:5,0:5:12.03:0,12,140 0/0:6,0:6:12.04:0,12,158 0/0:6,0:6:18.04:0,18,200 0/0:2,0:2:6.02:0,6,69 0/1:0,2:2:0.97:71,6,0 19 10084292 . C G 30251.19 . 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A G 2064.77 . 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C T 3897.78 . 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G A 3363.50 . AC=4;AF=0.048;AN=84;BaseQRankSum=-13.130;DP=1739;Dels=0.00;FS=12.079;HRun=1;HaplotypeScore=1.2163;InbreedingCoeff=-0.0500;MQ=58.83;MQ0=0;MQRankSum=2.424;QD=15.22;ReadPosRankSum=-0.137 GT:AD:DP:GQ:PL 0/1:12,14:26:99:338,0,342 0/1:18,21:39:99:583,0,568 0/0:29,0:29:84.22:0,84,1009 0/0:68,0:68:99:0,196,2579 0/0:72,0:72:99:0,211,2805 0/0:43,0:43:99:0,123,1657 0/0:30,0:30:90.29:0,90,1190 0/0:48,1:49:99:0,138,1841 0/0:32,0:32:96.30:0,96,1186 0/0:24,0:24:72.23:0,72,897 0/0:27,0:27:75.23:0,75,945 0/0:26,0:26:69.21:0,69,849 0/0:26,0:26:72.23:0,72,905 0/0:26,0:26:78.23:0,78,971 0/1:51,63:114:99:1769,0,1507 0/1:19,23:42:99:673,0,578 0/0:30,1:31:51.15:0,51,1037 0/0:39,0:39:99:0,114,1428 0/0:50,0:50:99:0,132,1620 0/0:70,0:70:99:0,193,2380 0/0:53,0:53:99:0,159,1992 0/0:50,1:51:99:0,115,1820 0/0:64,0:64:99:0,187,2522 0/0:42,0:42:99:0,120,1601 0/0:43,0:43:99:0,126,1646 0/0:43,0:43:99:0,126,1690 0/0:31,0:31:93.29:0,93,1156 0/0:24,0:24:72.22:0,72,892 0/0:29,0:29:87.26:0,87,1074 0/0:29,0:29:75.24:0,75,969 0/0:30,0:30:87.28:0,87,1109 0/0:68,0:69:99:0,187,2339 0/0:55,0:55:99:0,153,1918 0/0:34,0:34:96.30:0,96,1212 0/0:23,0:23:63.20:0,63,802 0/0:47,0:47:99:0,120,1566 0/0:46,0:46:99:0,132,1664 0/0:31,0:32:93.29:0,93,1151 0/0:30,0:30:84.27:0,84,1066 0/0:35,0:35:93.29:0,93,1167 0/0:25,0:26:69.21:0,69,872 0/0:40,0:40:99:0,117,1493 19 10129552 . C G 6472.39 . 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T C 421.42 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.465;DP=1027;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3993;InbreedingCoeff=-0.0246;MQ=58.61;MQ0=0;MQRankSum=0.420;QD=8.97;ReadPosRankSum=-0.521 GT:AD:DP:GQ:PL 0/1:16,14:30:99:358,0,441 0/0:27,0:27:69.21:0,69,859 0/0:25,0:25:60.18:0,60,744 0/0:23,0:23:60.18:0,60,729 0/0:16,0:16:42.13:0,42,533 0/0:18,0:18:39.13:0,39,518 0/0:13,0:13:36.12:0,36,459 0/0:7,0:7:21.06:0,21,253 0/0:19,0:19:54.16:0,54,639 0/0:28,0:28:72.22:0,72,891 0/0:24,0:24:69.21:0,69,832 0/0:35,0:35:93.28:0,93,1140 0/0:25,0:25:72.21:0,72,856 0/0:24,0:24:69.21:0,69,848 0/0:74,0:74:99:0,196,2393 0/0:19,0:19:48.14:0,48,590 0/0:47,0:47:99:0,120,1495 0/0:19,0:19:54.14:0,54,626 0/0:48,0:48:99:0,117,1459 0/0:46,0:46:99:0,114,1437 0/0:23,0:23:60.16:0,60,719 0/0:26,0:26:66.20:0,66,815 0/0:26,0:26:72.21:0,72,863 0/0:12,0:12:30.07:0,30,352 0/0:11,0:11:21.07:0,21,289 0/0:12,0:12:27.09:0,27,350 0/0:22,0:22:60.18:0,60,729 0/0:24,0:24:66.20:0,66,793 0/0:24,0:24:63.19:0,63,765 0/0:14,0:14:42.13:0,42,501 0/0:16,0:16:45.13:0,45,537 0/0:32,0:32:84.25:0,84,1033 0/0:21,0:21:63.19:0,63,739 0/0:20,0:20:57.15:0,57,675 0/0:23,0:23:66.20:0,66,791 0/0:17,0:17:42.13:0,42,519 0/0:32,0:32:87.27:0,87,1073 0/0:30,0:30:81.25:0,81,993 0/0:17,0:17:45.14:0,45,559 0/0:21,0:21:60.18:0,60,718 0/0:20,0:20:60.17:0,60,701 0/1:12,5:17:99:126,0,378 19 10131999 . T C 38829.46 . AC=39;AF=0.464;AN=84;BaseQRankSum=-3.141;DP=3522;Dels=0.00;FS=9.579;HRun=0;HaplotypeScore=10.1115;InbreedingCoeff=-0.1966;MQ=58.75;MQ0=0;MQRankSum=11.087;QD=15.32;ReadPosRankSum=-1.216 GT:AD:DP:GQ:PL 0/1:28,30:58:99:746,0,730 0/1:33,39:72:99:1095,0,804 1/1:0,51:51:99:1664,147,0 0/1:103,76:179:99:1989,0,2803 0/1:80,69:149:99:1886,0,2219 0/1:64,56:120:99:1619,0,1802 0/1:66,50:116:99:1579,0,1893 1/1:0,79:79:99:2725,211,0 0/1:35,26:61:99:567,0,1015 0/0:54,0:54:99:0,159,1877 0/1:35,24:59:99:616,0,1025 0/1:31,23:54:99:601,0,860 0/1:28,35:64:99:929,0,702 0/1:28,30:58:99:730,0,778 0/0:218,0:218:99:0,548,6672 0/0:58,0:59:99:0,165,1975 0/0:65,0:65:99:0,177,2097 0/1:39,27:66:99:716,0,1113 0/1:54,47:102:99:1282,0,1380 0/1:64,52:116:99:1335,0,1699 0/1:64,36:101:99:806,0,1830 0/1:45,40:85:99:1026,0,1249 0/0:168,1:171:99:0,405,5305 0/1:42,45:87:99:1330,0,1165 0/1:57,62:119:99:1739,0,1515 0/0:118,0:118:99:0,304,3804 1/1:0,39:39:99:1223,105,0 1/1:0,58:58:99:1813,159,0 1/1:0,55:55:99:1810,150,0 0/1:35,28:63:99:716,0,1037 0/1:30,24:54:99:609,0,814 0/0:120,0:121:99:0,298,3707 0/0:75,0:75:99:0,202,2383 0/0:67,0:67:99:0,181,2201 0/1:39,34:73:99:865,0,1099 0/1:31,30:61:99:728,0,902 0/1:56,41:97:99:1009,0,1403 1/1:1,63:64:99:1902,135,0 0/1:36,22:58:99:539,0,1047 0/1:26,31:57:99:760,0,773 0/0:40,0:40:99:0,114,1343 1/1:0,59:59:99:1875,159,0 19 10132000 . G A 6064.62 . 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C T 36593.49 . 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G T 10175.45 . 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C T 1917.37 . 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G A 648.64 . 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C T 1223.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=2.702;DP=2683;Dels=0.00;FS=2.869;HRun=0;HaplotypeScore=2.1365;InbreedingCoeff=-0.0244;MQ=58.16;MQ0=0;MQRankSum=-0.572;QD=14.93;ReadPosRankSum=-0.050 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,150,1667 0/0:37,0:37:99:0,105,1173 0/0:39,0:39:99:0,105,1242 0/0:157,1:158:99:0,382,5015 0/0:178,0:179:99:0,469,5764 0/0:129,0:129:99:0,328,4013 0/0:89,0:89:99:0,241,2933 0/0:105,0:105:99:0,271,3263 0/0:50,0:50:99:0,138,1549 0/0:35,0:35:99:0,102,1099 0/0:34,0:34:93.17:0,93,1026 0/0:36,0:36:96.24:0,96,1086 0/0:32,0:32:78.20:0,78,886 0/0:30,0:30:84.17:0,84,933 0/0:125,0:126:99:0,340,3840 0/0:43,0:43:99:0,123,1399 0/0:28,0:28:81.19:0,81,908 0/0:39,0:39:93.26:0,93,1070 0/0:77,0:79:99:0,208,2319 0/0:96,0:96:99:0,265,3004 0/0:93,0:94:99:0,244,2756 0/0:59,0:59:99:0,153,1718 0/0:175,0:175:99:0,448,5535 0/0:90,0:90:99:0,238,2905 0/0:90,0:90:99:0,220,2725 0/0:70,0:70:99:0,189,2249 0/0:27,0:27:72.19:0,72,836 0/0:35,0:35:99:0,99,1114 0/0:30,0:30:81.15:0,81,886 0/0:45,1:46:94.54:0,95,1400 0/0:36,0:36:99:0,105,1153 0/0:62,0:62:99:0,171,1955 0/0:59,0:59:99:0,153,1717 0/1:20,20:40:99:556,0,559 0/0:44,0:44:99:0,132,1444 0/1:17,25:42:99:731,0,428 0/0:74,0:76:99:0,186,2095 0/0:42,0:42:99:0,114,1231 0/0:38,0:38:96.23:0,96,1094 0/0:34,0:34:99:0,99,1109 0/0:35,0:35:90.20:0,90,993 0/0:41,0:41:99:0,108,1248 19 10395683 . A G 23980.89 . AC=38;AF=0.452;AN=84;BaseQRankSum=-5.102;DP=1739;Dels=0.00;FS=3.381;HRun=0;HaplotypeScore=1.3960;InbreedingCoeff=0.2311;MQ=58.74;MQ0=0;MQRankSum=1.237;QD=22.48;ReadPosRankSum=-1.106 GT:AD:DP:GQ:PL 0/0:25,0:25:66.20:0,66,800 0/1:10,13:23:99:408,0,260 0/1:9,12:22:99:350,0,224 1/1:0,79:79:99:2756,229,0 1/1:0,89:89:99:3058,250,0 0/0:60,0:60:99:0,168,2080 0/0:63,0:63:99:0,175,2155 0/0:53,0:53:99:0,147,1820 0/0:32,0:32:87.24:0,87,1018 0/0:33,0:33:90.27:0,90,1084 0/0:41,0:41:99:0,117,1418 1/1:0,37:37:99:1238,105,0 0/1:14,10:24:99:263,0,363 1/1:0,35:35:99:1164,102,0 0/0:99,0:99:99:0,265,3184 0/1:17,14:31:99:392,0,495 0/1:16,16:32:99:461,0,439 0/1:8,10:18:99:277,0,223 1/1:0,51:51:99:1663,147,0 0/1:36,33:69:99:831,0,1003 0/0:46,0:46:99:0,129,1516 0/1:27,20:47:99:541,0,796 0/1:51,37:88:99:1063,0,1459 0/0:49,0:49:99:0,138,1717 0/0:65,0:65:99:0,172,2138 0/0:34,1:35:61.07:0,61,1162 0/0:15,0:15:45.13:0,45,526 0/0:27,0:27:78.24:0,78,948 0/0:29,0:29:87.27:0,87,1052 1/1:0,20:20:54.16:659,54,0 0/1:9,11:20:99:315,0,266 0/1:21,31:52:99:884,0,581 1/1:0,45:45:99:1506,129,0 1/1:0,26:26:78.20:889,78,0 0/1:13,11:24:99:290,0,404 1/1:1,30:31:61.59:976,62,0 1/1:0,47:48:99:1501,135,0 0/1:22,18:40:99:517,0,673 0/1:15,13:28:99:367,0,447 0/1:21,13:34:99:367,0,634 1/1:0,31:31:81.22:977,81,0 0/1:13,10:23:99:269,0,389 19 10398827 . A G 571.37 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.224;DP=1547;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7977;InbreedingCoeff=-0.0120;MQ=58.95;MQ0=0;MQRankSum=2.234;QD=19.05;ReadPosRankSum=-0.079 GT:AD:DP:GQ:PL 0/0:31,0:32:84.24:0,84,1005 0/0:43,0:43:99:0,114,1337 0/0:26,0:26:75.22:0,75,882 0/0:54,0:54:99:0,147,1746 0/0:35,0:36:99:0,105,1241 0/0:42,0:42:99:0,120,1444 0/0:24,0:24:69.20:0,69,831 0/0:33,0:33:87.26:0,87,1072 0/0:36,0:36:99:0,99,1168 0/0:35,0:35:96.26:0,96,1123 0/0:33,0:33:93.25:0,93,1084 0/0:25,0:25:69.19:0,69,795 0/0:28,1:29:72.21:0,72,864 0/0:28,0:28:78.23:0,78,934 0/0:99,0:99:99:0,259,3112 0/0:29,0:29:81.24:0,81,962 0/0:30,0:30:84.25:0,84,1008 0/0:27,0:27:75.23:0,75,905 0/0:57,1:58:99:0,147,1786 0/0:44,0:44:99:0,123,1486 0/0:40,0:40:99:0,108,1305 0/0:32,0:32:96.29:0,96,1132 0/0:62,0:62:99:0,181,2122 0/0:33,0:33:87.24:0,87,1049 0/0:39,0:39:99:0,102,1229 0/0:29,0:29:78.23:0,78,940 0/0:27,0:27:72.21:0,72,861 0/0:38,0:38:99:0,102,1199 0/0:32,0:32:84.25:0,84,1015 0/0:32,0:32:90.23:0,90,1043 0/0:26,1:28:78.22:0,78,906 0/0:42,0:42:99:0,114,1373 0/0:30,0:30:78.21:0,78,947 0/0:37,0:37:96.29:0,96,1173 0/0:31,0:31:84.25:0,84,1017 0/0:30,0:30:78.24:0,78,957 0/0:44,0:44:99:0,120,1453 0/0:43,0:43:99:0,120,1435 0/1:11,19:30:99:618,0,286 0/0:28,0:28:81.23:0,81,952 0/0:38,0:38:99:0,111,1310 0/0:39,0:39:99:0,102,1190 19 10404519 . G A 15987.37 . AC=17;AF=0.202;AN=84;BaseQRankSum=-11.216;DP=2386;Dels=0.00;FS=1.672;HRun=1;HaplotypeScore=1.9397;InbreedingCoeff=0.3354;MQ=59.04;MQ0=0;MQRankSum=1.705;QD=19.54;ReadPosRankSum=2.826 GT:AD:DP:GQ:PL 0/0:28,0:28:81.25:0,81,1025 0/0:26,0:26:78.23:0,78,961 0/0:35,0:35:99:0,102,1259 0/1:73,49:122:99:1365,0,2298 1/1:1,148:149:99:5353,424,0 0/0:103,0:103:99:0,277,3712 0/0:81,0:81:99:0,223,2957 0/0:81,0:81:99:0,223,2981 0/0:31,0:31:78.25:0,78,1015 0/0:43,0:43:99:0,111,1348 0/0:44,1:45:83.35:0,83,1416 0/0:26,0:26:75.23:0,75,936 0/0:31,0:31:87.27:0,87,1085 0/0:38,0:38:99:0,105,1344 0/0:116,0:116:99:0,304,3802 0/1:30,19:49:99:475,0,897 0/0:36,0:36:96.30:0,96,1215 0/0:33,0:34:90.28:0,90,1137 0/1:39,34:73:99:857,0,1071 0/1:47,49:96:99:1281,0,1355 0/0:83,0:83:99:0,226,2820 0/1:38,22:60:99:601,0,1141 0/0:147,0:147:99:0,406,5440 0/0:54,0:54:99:0,150,1993 0/0:87,0:87:99:0,244,3249 0/0:79,0:79:99:0,214,2870 0/0:20,0:20:60.19:0,60,763 0/0:29,0:29:78.25:0,78,980 0/0:35,0:35:99:0,99,1270 0/0:37,0:37:99:0,102,1303 0/0:28,0:28:78.25:0,78,994 0/0:84,0:84:99:0,211,2696 0/0:65,0:65:99:0,178,2233 0/1:14,7:21:99:179,0,412 0/0:30,0:30:81.26:0,81,1030 1/1:0,37:37:99:1314,105,0 1/1:0,63:63:99:2022,162,0 0/1:24,19:43:99:512,0,648 0/1:20,16:36:99:455,0,596 0/1:16,19:35:99:566,0,499 1/1:2,31:34:20.72:1008,21,0 0/0:34,0:34:84.27:0,84,1084 19 10406104 . G A 912.33 . AC=10;AF=0.119;AN=84;BaseQRankSum=-0.309;DP=571;Dels=0.00;FS=14.241;HRun=0;HaplotypeScore=0.4283;InbreedingCoeff=0.0884;MQ=57.75;MQ0=0;MQRankSum=2.111;QD=10.73;ReadPosRankSum=-0.214 GT:AD:DP:GQ:PL 0/0:9,0:9:24.07:0,24,284 0/0:11,0:11:27.08:0,27,341 0/0:5,0:5:15.04:0,15,170 0/0:32,0:32:87.22:0,87,1067 0/0:24,0:24:63.19:0,63,808 0/0:25,0:25:60.18:0,60,772 0/0:12,0:12:30.09:0,30,395 0/0:9,0:9:21.07:0,21,274 0/0:9,0:9:27.07:0,27,315 0/0:14,0:14:36.10:0,36,434 0/0:11,0:11:33.10:0,33,396 1/1:0,12:12:27.09:353,27,0 0/1:3,2:5:22.52:67,0,23 0/1:6,5:11:99:104,0,146 0/0:34,0:34:93.26:0,93,1084 0/0:15,0:15:42.11:0,42,492 0/1:8,2:10:42.05:42,0,275 0/0:10,0:11:27.06:0,27,300 0/0:17,0:17:39.11:0,39,477 0/0:28,0:29:66.18:0,66,800 0/0:21,0:21:63.16:0,63,705 0/0:14,0:14:36.10:0,36,447 0/0:29,0:29:63.21:0,63,857 0/0:14,0:14:39.12:0,39,516 0/0:14,0:14:36.12:0,36,468 0/0:12,0:12:30.09:0,30,374 0/1:4,7:11:99:219,0,120 0/1:5,5:10:99:129,0,147 0/0:3,0:3:9.03:0,9,110 0/0:11,0:11:30.09:0,30,361 0/0:14,0:14:42.09:0,42,479 0/1:8,4:12:99:102,0,238 0/0:11,0:11:30.09:0,30,358 0/1:3,1:4:24.94:25,0,104 0/1:8,2:10:10.73:11,0,240 0/0:7,0:7:18.06:0,18,228 0/0:13,0:13:36.09:0,36,411 0/0:13,0:13:39.09:0,39,430 0/0:6,0:6:18.05:0,18,212 0/0:8,0:8:24.06:0,24,266 0/0:11,0:11:30.06:0,30,344 0/0:18,0:18:51.11:0,51,544 19 10406200 . C G 143.37 . AC=11;AF=0.157;AN=70;BaseQRankSum=-2.816;DP=143;Dels=0.00;FS=87.034;HRun=2;HaplotypeScore=0.2244;InbreedingCoeff=-0.1514;MQ=57.60;MQ0=0;MQRankSum=-0.613;QD=3.41;ReadPosRankSum=-4.662 GT:AD:DP:GQ:PL 0/1:2,1:3:30.98:31,0,54 0/1:3,2:5:25.34:25,0,46 0/0:1,0:1:3.01:0,3,32 0/0:7,1:8:18.03:0,18,194 0/0:9,1:10:27.07:0,27,301 0/0:1,0:1:3.01:0,3,36 ./. 0/0:3,0:3:9.03:0,9,103 0/1:1,2:3:15.69:16,0,19 0/0:3,1:4:9.02:0,9,98 ./. 0/0:4,1:5:6:0,6,57 ./. 0/0:2,0:2:6.02:0,6,65 0/0:6,1:7:18:0,18,171 0/1:4,3:7:14.59:15,0,108 ./. 0/0:5,0:5:9.02:0,9,96 1/1:0,1:1:3:26,3,0 0/0:3,1:4:6.01:0,6,59 0/1:4,1:5:21.10:21,0,110 0/0:2,2:4:3.01:0,3,31 ./. 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,34 0/0:3,0:3:9.03:0,9,102 0/0:2,0:2:6.01:0,6,61 0/0:2,0:2:6.01:0,6,61 0/0:3,0:3:9.02:0,9,102 0/0:3,1:4:9.02:0,9,97 0/1:3,2:5:14.65:15,0,90 0/0:4,2:6:12.02:0,12,125 0/1:1,2:3:23.48:48,0,23 ./. 0/0:4,0:4:12.03:0,12,129 ./. 0/0:1,0:1:3.01:0,3,33 0/0:4,1:5:12.02:0,12,120 0/0:3,1:4:6.02:0,6,67 0/1:2,2:4:51.03:51,0,57 0/0:2,2:4:6.02:0,6,68 0/1:3,3:6:13.67:14,0,79 19 10433360 . C T 222.67 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.078;DP=452;Dels=0.00;FS=1.143;HRun=0;HaplotypeScore=0.4871;InbreedingCoeff=-0.0525;MQ=58.95;MQ0=0;MQRankSum=0.489;QD=7.68;ReadPosRankSum=-0.581 GT:AD:DP:GQ:PL 0/0:7,0:8:18.05:0,18,218 0/0:2,0:2:6.02:0,6,68 0/1:5,4:9:99:116,0,137 0/0:30,0:30:81.24:0,81,997 0/0:12,0:12:27.07:0,27,327 0/0:10,0:10:27.07:0,27,322 0/0:10,0:10:27.05:0,27,324 0/0:17,0:17:39.12:0,39,516 0/0:7,0:7:21.05:0,21,228 0/1:4,4:8:99:123,0,104 0/0:9,0:9:24.06:0,24,277 0/0:2,0:2:6.01:0,6,63 0/0:5,0:5:15.01:0,15,151 0/0:5,0:5:15.04:0,15,179 0/0:31,0:32:81.23:0,81,958 0/0:11,0:11:27.08:0,27,324 0/0:7,0:7:21.05:0,21,229 0/0:4,0:4:12.02:0,12,125 0/0:15,0:15:36.10:0,36,437 0/0:17,0:17:48.11:0,48,538 0/0:23,0:23:57.15:0,57,673 0/0:11,0:11:30.08:0,30,345 0/0:21,0:21:51.14:0,51,628 0/0:17,0:17:48.13:0,48,564 0/0:26,0:26:60.17:0,60,775 0/1:8,4:12:58.50:58,0,197 0/0:4,0:4:12.01:0,12,121 0/0:8,0:8:21.06:0,21,254 0/0:11,0:11:27.08:0,27,326 0/0:6,0:6:15.04:0,15,178 0/0:8,0:8:24.06:0,24,264 0/0:15,0:15:36.08:0,36,417 0/0:12,0:12:27.07:0,27,324 0/0:3,0:3:5.98:0,6,47 0/0:4,0:4:9.02:0,9,102 0/0:8,0:8:24.05:0,24,266 0/0:11,0:11:27.08:0,27,321 0/0:5,0:5:12.04:0,12,149 0/0:9,0:9:24.07:0,24,289 0/0:7,0:7:18.05:0,18,210 0/0:4,0:4:9.03:0,9,106 0/0:7,0:7:18.04:0,18,189 19 10444603 . C G 4584.04 . 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A C 19.78 . 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G A 666.46 . 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C T 2746.77 . 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C T 845.56 . 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G A 818.34 . 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C T 3561.77 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.014;DP=6198;DS;Dels=0.00;FS=1.092;HRun=1;HaplotypeScore=4.2494;InbreedingCoeff=-0.0120;MQ=59.19;MQ0=0;MQRankSum=-0.854;QD=14.30;ReadPosRankSum=1.148 GT:AD:DP:GQ:PL 0/0:98,0:98:99:0,268,3394 0/0:91,0:92:99:0,256,3199 0/0:87,0:87:99:0,256,3190 0/0:250,0:250:99:0,695,9165 0/0:241,0:241:99:0,668,8902 0/0:249,0:249:99:0,677,9077 0/0:218,0:218:99:0,581,7721 0/0:222,0:223:99:0,590,7848 0/0:114,0:114:99:0,313,3957 0/0:83,0:83:99:0,235,2919 0/0:105,0:105:99:0,289,3623 0/0:109,0:109:99:0,301,3745 0/0:79,0:79:99:0,229,2886 0/0:103,0:103:99:0,286,3630 0/0:234,0:234:99:0,608,7697 0/0:134,0:134:99:0,379,4764 0/0:111,0:111:99:0,310,3893 0/0:104,0:104:99:0,280,3562 0/0:219,0:219:99:0,599,7404 0/0:231,1:233:99:0,588,7709 0/0:222,0:222:99:0,596,7603 0/0:167,0:167:99:0,466,5909 0/1:132,117:249:99:3562,0,4173 0/0:188,0:188:99:0,494,6633 0/0:242,0:242:99:0,659,8774 0/0:172,0:172:99:0,460,6077 0/0:83,0:83:99:0,232,2936 0/0:101,0:101:99:0,292,3655 0/0:92,0:92:99:0,256,3206 0/0:100,0:100:99:0,274,3419 0/0:109,0:110:99:0,304,3859 0/0:210,0:210:99:0,578,7409 0/0:167,0:167:99:0,457,5820 0/0:121,0:122:99:0,337,4267 0/0:104,0:104:99:0,286,3599 0/0:108,0:108:99:0,298,3785 0/0:186,0:186:99:0,502,6239 0/0:98,0:98:99:0,274,3397 0/0:109,0:109:99:0,313,3838 0/0:111,0:111:99:0,304,3798 0/0:80,0:80:99:0,214,2702 0/0:90,0:90:99:0,250,3144 19 10662838 . T G 77.75 . AC=4;AF=0.048;AN=84;BaseQRankSum=-8.216;DP=1457;Dels=0.00;FS=242.388;HRun=3;HaplotypeScore=1.6556;InbreedingCoeff=-0.0984;MQ=57.71;MQ0=0;MQRankSum=0.428;QD=0.76;ReadPosRankSum=-6.703 GT:AD:DP:GQ:PL 0/0:15,3:18:45.12:0,45,505 0/0:18,12:30:16.59:0,17,489 0/0:11,9:20:13.84:0,14,261 0/0:54,25:80:5.69:0,6,1315 0/0:52,29:81:44.83:0,45,1377 0/0:39,16:55:1.75:3,0,977 0/0:33,8:42:78.14:0,78,847 0/0:34,19:53:87.17:0,87,964 0/0:9,12:21:2.71:1,0,187 0/0:14,11:25:13.41:0,13,376 0/1:18,16:34:61.45:61,0,352 0/0:14,11:26:13.56:0,14,441 0/0:12,5:17:1.26:5,0,299 0/0:16,13:30:39.10:0,39,441 0/0:48,22:70:49.57:0,50,1327 0/0:16,11:27:7.39:0,7,315 0/0:20,13:33:19.57:0,20,516 0/0:8,7:15:24.06:0,24,264 0/0:29,8:37:13.62:0,14,835 0/0:40,13:53:68.80:0,69,1059 0/0:23,17:40:25.80:0,26,615 0/0:21,15:36:23.50:0,23,501 0/0:54,28:83:28.69:0,29,1301 0/0:27,9:37:66.18:0,66,756 0/0:42,17:59:91.57:0,92,1235 0/0:28,19:47:10.18:0,10,705 0/0:9,6:15:21.06:0,21,254 0/0:11,10:21:27.03:0,27,287 0/0:13,7:20:27.07:0,27,305 0/0:12,14:26:27.08:0,27,315 0/0:14,7:21:42.11:0,42,477 0/0:29,12:41:50.59:0,51,839 0/1:19,8:27:46.57:47,0,445 0/0:21,12:33:35.59:0,36,704 0/0:16,9:25:26.43:0,26,490 0/0:20,10:30:6.76:0,7,500 0/1:16,10:26:9.16:9,0,445 0/0:19,10:29:22.55:0,23,510 0/0:7,8:15:0.87:7,0,206 0/0:13,7:20:33.07:0,33,374 0/1:8,7:15:39.04:39,0,167 0/0:20,4:24:51.12:0,51,565 19 10671894 . T G 1871.81 . AC=3;AF=0.036;AN=84;BaseQRankSum=-1.090;DP=3136;Dels=0.00;FS=10.571;HRun=0;HaplotypeScore=1.7429;InbreedingCoeff=-0.0370;MQ=59.18;MQ0=0;MQRankSum=0.839;QD=9.90;ReadPosRankSum=-3.606 GT:AD:DP:GQ:PL 0/0:62,1:63:99:0,159,1980 0/0:48,0:48:99:0,129,1525 0/0:51,0:51:99:0,135,1659 0/0:157,0:158:99:0,370,4591 0/0:131,0:131:99:0,310,3871 0/0:93,0:94:99:0,232,2895 0/0:88,0:89:99:0,208,2585 0/0:105,0:106:99:0,262,3258 0/0:47,0:47:99:0,111,1391 0/0:38,0:38:90.23:0,90,1074 0/0:41,0:41:99:0,102,1225 0/0:48,0:49:99:0,126,1534 0/0:56,0:56:99:0,132,1658 0/0:55,0:56:99:0,135,1644 0/0:181,0:182:99:0,427,5185 0/0:64,0:66:99:0,175,2082 0/0:71,0:71:99:0,169,2110 0/0:46,0:46:99:0,132,1587 0/0:119,0:121:99:0,316,3784 0/0:113,0:115:99:0,274,3367 0/0:97,0:100:99:0,241,2880 0/0:74,0:75:99:0,214,2581 0/0:180,0:180:99:0,412,5251 0/0:75,0:76:99:0,178,2251 0/0:86,0:86:99:0,211,2570 0/0:83,0:84:99:0,199,2446 0/0:29,0:30:72.21:0,72,900 0/0:43,0:44:99:0,117,1431 0/0:52,0:53:99:0,129,1579 0/0:40,0:41:99:0,108,1308 0/0:56,1:57:99:0,150,1834 0/0:98,0:99:99:0,259,3069 0/0:82,0:83:99:0,211,2526 0/0:48,0:50:99:0,129,1528 0/0:55,0:55:99:0,159,1936 0/1:27,23:50:99:602,0,633 0/1:53,29:86:99:653,0,1467 0/1:23,30:53:99:692,0,651 0/0:66,0:66:99:0,172,2106 0/0:55,0:55:99:0,138,1705 0/0:39,0:39:96.28:0,96,1153 0/0:46,0:46:99:0,123,1499 19 10676423 . G A 6275.96 . AC=61;AF=0.744;AN=82;BaseQRankSum=-6.865;DP=290;Dels=0.00;FS=1.034;HRun=1;HaplotypeScore=0.1582;InbreedingCoeff=-0.3651;MQ=57.49;MQ0=0;MQRankSum=-1.021;QD=21.64;ReadPosRankSum=0.318 GT:AD:DP:GQ:PL 0/1:2,5:7:49.42:159,0,49 1/1:0,4:4:12.03:139,12,0 0/1:3,2:5:32.74:33,0,90 0/1:8,6:14:99:141,0,212 0/1:5,6:11:99:153,0,162 0/1:2,1:3:30.29:30,0,67 0/1:4,4:8:88.88:89,0,143 0/1:2,3:5:64.04:67,0,64 1/1:0,5:5:15.05:179,15,0 0/1:1,2:3:28.77:57,0,29 1/1:0,5:5:12.04:148,12,0 0/1:5,2:7:21.93:22,0,145 0/1:2,1:3:26.22:26,0,67 1/1:0,4:4:12.04:141,12,0 1/1:0,27:27:60.18:755,60,0 0/1:6,3:9:76.81:77,0,159 0/1:4,3:7:78.28:78,0,123 0/1:3,3:6:61.33:89,0,61 0/1:3,5:8:56.83:151,0,57 0/1:4,5:9:99:116,0,123 1/1:0,8:8:24.07:273,24,0 0/1:5,4:9:99:111,0,129 0/1:7,5:12:99:151,0,189 1/1:0,3:3:9.03:112,9,0 0/1:4,4:8:98.86:99,0,103 ./. 1/1:0,3:3:9.02:104,9,0 1/1:0,8:8:24.07:282,24,0 0/1:8,3:11:71.23:71,0,217 1/1:0,6:6:15.05:191,15,0 1/1:0,4:4:9.03:112,9,0 0/1:2,5:7:57.52:158,0,58 1/1:0,7:7:18.05:209,18,0 1/1:0,7:7:21.06:246,21,0 1/1:0,9:9:27.08:314,27,0 1/1:0,4:4:12.03:140,12,0 1/1:0,8:8:24.04:267,24,0 1/1:0,3:3:9.03:105,9,0 1/1:0,12:12:33.08:380,33,0 1/1:0,2:2:6.01:65,6,0 0/1:2,1:3:24.41:24,0,61 1/1:0,6:6:18.05:210,18,0 19 10753983 . G C 404.79 . AC=20;AF=0.238;AN=84;BaseQRankSum=-9.251;DP=622;Dels=0.00;FS=333.719;HRun=1;HaplotypeScore=0.5462;InbreedingCoeff=-0.3268;MQ=58.00;MQ0=0;MQRankSum=-0.916;QD=1.40;ReadPosRankSum=-6.534 GT:AD:DP:GQ:PL 0/1:8,5:14:10.49:10,0,190 0/0:7,4:11:20.55:0,21,231 0/0:8,7:15:23.55:0,24,254 0/1:14,16:30:24.33:24,0,446 0/0:11,8:19:1.33:4,0,290 0/1:9,7:16:28.24:28,0,235 0/0:12,8:20:33.10:0,33,431 0/0:6,2:15:15.05:0,15,202 0/1:7,7:14:60.59:61,0,233 0/0:6,5:11:15.04:0,15,176 0/0:8,4:12:21.06:0,21,254 0/0:4,2:6:12.04:0,12,149 0/0:10,3:13:24.07:0,24,288 0/1:9,4:14:38.22:38,0,248 0/0:29,10:39:27.41:0,27,972 0/1:9,4:13:14.50:15,0,238 0/0:8,1:9:21.07:0,21,262 0/1:9,6:15:65.39:65,0,252 0/0:13,5:18:7.23:0,7,376 0/1:16,7:23:17.17:17,0,430 0/0:14,6:20:30.09:0,30,360 0/1:12,3:15:18.30:18,0,261 0/1:18,11:30:21.72:22,0,472 0/0:8,8:16:22.32:0,22,291 0/1:4,7:11:26.22:26,0,74 0/1:8,5:13:10.28:10,0,255 0/1:4,6:10:48.93:49,0,96 0/0:9,1:10:18.05:0,18,214 0/0:12,4:16:29.66:0,30,320 0/0:9,5:14:24.07:0,24,278 0/0:4,4:8:9.03:0,9,110 0/0:17,5:22:12.63:0,13,484 0/0:8,5:13:18.03:0,18,200 0/1:8,4:12:8.17:8,0,272 0/1:5,5:10:68.67:69,0,134 0/0:9,5:14:21.06:0,21,240 0/1:6,5:11:13.32:13,0,175 0/1:4,2:6:16.62:17,0,95 0/1:6,5:11:39.88:40,0,132 0/1:3,4:7:28.77:29,0,66 0/0:7,4:11:16.86:0,17,185 0/1:6,8:14:7.65:8,0,130 19 10793910 . G C 7.83 . AC=2;AF=0.024;AN=84;BaseQRankSum=-14.666;DP=2238;Dels=0.00;FS=148.131;HRun=1;HaplotypeScore=7.4329;InbreedingCoeff=-0.0565;MQ=58.63;MQ0=0;MQRankSum=-0.914;QD=0.07;ReadPosRankSum=-7.410 GT:AD:DP:GQ:PL 0/0:44,7:51:70.40:0,70,1021 0/0:32,6:38:2.93:0,0,526 0/0:27,5:32:11.02:0,11,725 0/1:60,25:85:39.13:39,0,1608 0/0:70,16:86:99:0,143,2020 0/0:53,12:66:99:0,116,1362 0/0:52,10:62:89.81:0,90,1258 0/0:44,10:54:93.02:0,93,1050 0/0:44,3:47:84.18:0,84,961 0/0:30,1:31:72.13:0,72,813 0/0:42,7:50:57.87:0,58,1135 0/0:28,1:29:72.17:0,72,827 0/0:27,8:35:8.76:0,9,531 0/0:36,1:37:90.20:0,90,1011 0/0:124,6:130:99:0,283,3238 0/0:41,8:49:42.09:0,42,1046 0/0:39,8:48:64.58:0,65,976 0/0:24,5:29:9.69:0,10,522 0/0:55,4:62:99:0,138,1520 0/0:81,5:86:99:0,204,2348 0/0:48,1:49:94.56:0,95,1263 0/0:57,10:68:99:0,105,1353 0/0:85,16:101:99:0,160,2333 0/0:52,3:55:99:0,107,1451 0/0:56,11:67:27.59:0,28,1368 0/0:53,8:61:85.73:0,86,1499 0/0:31,3:34:20.04:0,20,843 0/0:29,1:30:66.15:0,66,770 0/0:35,3:38:87.12:0,87,978 0/0:39,4:43:81.17:0,81,927 0/0:47,1:48:85.54:0,86,1145 0/0:75,1:76:99:0,171,2038 0/0:43,12:55:0.65:8,0,995 0/1:21,8:29:27.65:28,0,500 0/0:37,8:46:38.84:0,39,913 0/0:43,0:43:81.18:0,81,920 0/0:46,10:57:20:0,20,1326 0/0:53,4:57:99:0,129,1497 0/0:44,12:56:0.91:6,0,964 0/0:39,1:40:99:0,99,1113 0/0:36,2:38:81.20:0,81,926 0/0:40,0:40:99:0,102,1158 19 10793910 . G GC 363.46 . AC=9;AF=0.107;AN=84;BaseQRankSum=-4.838;DP=2295;FS=564.856;HRun=1;HaplotypeScore=164.0496;InbreedingCoeff=-0.1559;MQ=58.68;MQ0=0;MQRankSum=2.132;QD=0.85;ReadPosRankSum=-18.570 GT:AD:DP:GQ:PL 0/0:50,0:50:43.08:0,43,1222 0/0:42,0:42:1.47:4,0,670 0/0:30,0:30:22.61:0,23,764 0/1:87,0:87:99:101,0,1710 0/0:86,0:86:99:0,119,2012 0/0:69,0:69:83.28:0,83,1533 0/0:64,0:63:78.12:0,78,1436 0/0:55,0:54:58.62:0,59,1145 0/0:40,9:49:17.78:0,18,819 0/0:24,7:32:23.84:0,24,593 0/0:50,0:50:48.19:0,48,1074 0/1:23,5:28:27.25:27,0,566 0/1:36,1:37:16.46:16,0,624 0/1:31,6:37:17.46:17,0,803 0/0:109,29:139:17.55:0,18,2689 0/0:50,0:50:40.78:0,41,1088 0/0:50,1:51:32.50:0,33,1035 0/0:28,0:28:8.39:0,8,479 0/1:55,12:67:15.96:16,0,1219 0/0:86,0:86:99:0,213,2622 0/1:34,15:49:99:150,0,965 0/0:68,0:68:92.18:0,92,1551 0/0:100,0:100:99:0,166,2458 0/0:57,0:54:99:0,138,1498 0/0:66,0:64:24.62:0,25,1417 0/0:62,0:57:54.85:0,55,1478 0/0:35,0:35:36.53:0,37,893 0/0:29,4:33:29.29:0,29,716 0/0:39,0:39:92.21:0,92,1151 0/0:38,6:44:2.59:1,0,831 0/1:35,16:51:99:145,0,812 0/0:71,6:78:99:0,148,2130 0/0:55,0:55:9.62:0,10,1044 0/1:31,0:31:4.09:4,0,555 0/0:45,1:46:34.24:0,34,1047 0/0:39,6:45:51.35:0,51,1035 0/0:56,0:56:2.55:1,0,1321 0/0:50,7:57:44.82:0,45,1228 0/0:57,1:58:2.43:1,0,1045 0/0:35,8:43:10.70:0,11,798 0/1:34,7:41:11.57:12,0,768 0/0:37,7:43:53.06:0,53,980 19 10946793 . C G 42.74 . AC=2;AF=0.025;AN=80;BaseQRankSum=-3.188;DP=180;Dels=0.00;FS=40.950;HRun=5;HaplotypeScore=0.3073;InbreedingCoeff=-0.0952;MQ=57.08;MQ0=0;MQRankSum=0.939;QD=3.29;ReadPosRankSum=-2.598 GT:AD:DP:GQ:PL 0/0:6,0:6:9.03:0,9,116 0/0:1,1:2:3.01:0,3,32 0/0:5,0:5:15.05:0,15,183 0/0:9,1:10:27.08:0,27,336 0/0:5,0:5:12.04:0,12,159 0/0:4,0:4:9.03:0,9,120 0/0:2,1:3:3.01:0,3,42 0/0:2,0:2:6.02:0,6,82 0/0:6,0:6:12.03:0,12,139 0/0:3,0:3:9.02:0,9,97 0/0:5,1:6:15.04:0,15,178 0/0:2,0:2:6.02:0,6,76 0/0:4,1:5:9:0,9,90 0/0:4,1:5:12.04:0,12,152 0/1:5,3:8:46.93:47,0,125 0/0:1,0:1:3.01:0,3,40 0/0:2,1:3:6.02:0,6,76 0/0:2,0:2:6.02:0,6,73 0/0:6,1:7:9.03:0,9,111 0/0:7,1:8:21.06:0,21,248 0/0:2,1:3:6.02:0,6,73 0/0:4,0:4:12.03:0,12,144 0/0:6,1:7:15.05:0,15,192 0/0:3,0:3:6.02:0,6,76 0/0:6,1:7:12.04:0,12,158 ./. 0/0:3,0:3:9.03:0,9,110 0/0:4,1:5:9.03:0,9,111 ./. 0/0:3,0:3:6.02:0,6,67 0/0:3,0:3:9.01:0,9,101 0/0:6,1:7:18.06:0,18,239 0/0:5,1:6:15.05:0,15,188 0/0:1,1:2:3.01:0,3,36 0/0:2,1:3:6.02:0,6,70 0/0:5,1:6:9.03:0,9,108 0/0:3,1:4:9.03:0,9,112 0/0:4,0:4:12.03:0,12,144 0/0:4,1:5:9.03:0,9,104 0/0:3,0:3:9.03:0,9,113 0/1:3,2:5:56.29:56,0,96 0/0:3,0:3:6.02:0,6,70 19 10946825 . G T 20.79 . AC=4;AF=0.054;AN=74;BaseQRankSum=-3.032;DP=123;Dels=0.00;FS=13.009;HRun=1;HaplotypeScore=0.1985;InbreedingCoeff=-0.1683;MQ=55.49;MQ0=0;MQRankSum=-1.345;QD=1.16;ReadPosRankSum=0.328 GT:AD:DP:GQ:PL 0/0:5,0:5:9.03:0,9,110 0/0:5,1:6:11.98:0,12,121 0/0:4,0:4:12.03:0,12,137 0/1:2,2:4:12.66:13,0,62 0/0:3,0:3:9.03:0,9,123 0/0:2,0:2:6.02:0,6,69 ./. 0/0:1,0:1:3.01:0,3,42 0/0:5,0:5:15.05:0,15,189 0/0:1,0:1:3.01:0,3,37 ./. 0/0:3,1:4:6.02:0,6,71 0/1:4,2:6:40.08:40,0,122 0/0:4,1:5:12.03:0,12,138 0/0:4,2:6:9.03:0,9,105 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,33 0/0:4,1:5:9.03:0,9,116 0/0:6,2:8:12.04:0,12,149 0/0:3,0:3:6.02:0,6,74 0/0:4,1:5:9.02:0,9,106 0/0:5,0:5:12.03:0,12,151 0/1:2,1:3:20.66:21,0,36 0/0:3,0:3:6.02:0,6,75 ./. 0/0:1,0:1:3.01:0,3,32 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,35 0/0:2,0:2:6.02:0,6,72 0/0:1,0:1:3:0,3,25 0/0:2,0:2:6.02:0,6,73 0/0:4,0:4:12.04:0,12,139 0/0:1,0:1:3.01:0,3,39 0/0:4,0:4:9.01:0,9,93 0/0:1,1:2:3.01:0,3,38 0/0:3,0:3:6.02:0,6,67 ./. 0/1:4,1:5:24.41:24,0,65 ./. 0/0:2,0:2:3.01:0,3,38 0/0:3,1:4:3:0,3,25 19 11098596 . T C 273.70 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.803;DP=763;Dels=0.00;FS=6.315;HRun=0;HaplotypeScore=0.8317;InbreedingCoeff=-0.0271;MQ=58.98;MQ0=0;MQRankSum=0.325;QD=10.53;ReadPosRankSum=-1.357 GT:AD:DP:GQ:PL 0/0:12,0:12:27.07:0,27,337 0/0:11,0:11:27.04:0,27,292 0/0:5,0:5:15.04:0,15,169 0/0:47,0:47:99:0,123,1486 0/0:29,0:29:69.19:0,69,829 0/0:23,0:24:63.17:0,63,743 0/0:27,0:27:69.16:0,69,813 0/0:38,0:38:87.26:0,87,1090 0/0:13,0:13:36.08:0,36,391 0/0:13,0:13:36.11:0,36,429 0/0:19,0:19:45.13:0,45,539 0/0:14,0:14:42.12:0,42,488 0/0:10,0:10:27.08:0,27,324 0/0:6,0:6:18.05:0,18,205 0/0:38,0:38:99:0,102,1201 0/0:24,0:24:69.17:0,69,777 0/0:13,0:13:33.10:0,33,403 0/0:11,0:12:33.10:0,33,386 0/0:19,0:19:51.14:0,51,604 0/0:22,0:22:54.13:0,54,629 0/0:29,0:29:72.21:0,72,863 0/0:11,0:11:30.09:0,30,354 0/0:49,0:49:99:0,114,1383 0/0:26,0:26:66.18:0,66,774 0/0:27,0:27:63.19:0,63,795 0/0:26,0:26:63.19:0,63,767 0/0:12,0:12:33.09:0,33,375 0/0:9,0:9:24.07:0,24,279 0/0:8,0:8:24.05:0,24,268 0/0:6,0:6:15.05:0,15,177 0/0:16,0:16:39.12:0,39,469 0/0:17,0:17:45.13:0,45,542 0/0:11,0:11:33.07:0,33,362 0/0:13,0:13:36.09:0,36,419 0/0:14,0:15:36.11:0,36,434 0/0:15,0:15:42.12:0,42,498 0/0:25,0:26:60.18:0,60,727 0/0:14,0:14:33.07:0,33,391 0/0:7,0:7:21.06:0,21,237 0/1:6,6:12:99:183,0,163 0/0:4,0:4:9.03:0,9,114 0/1:8,5:14:99:153,0,200 19 11123647 . T G 7141.46 . AC=41;AF=0.488;AN=84;BaseQRankSum=-25.444;DP=2458;Dels=0.00;FS=2568.594;HRun=2;HaplotypeScore=2.7454;InbreedingCoeff=-0.9513;MQ=58.60;MQ0=0;MQRankSum=2.863;QD=2.94;ReadPosRankSum=-26.167 GT:AD:DP:GQ:PL 0/1:34,33:67:99:178,0,995 0/1:26,28:54:99:168,0,664 0/1:26,21:47:99:175,0,799 0/1:43,49:92:99:330,0,1246 0/1:39,42:82:99:111,0,1162 0/1:22,43:65:99:303,0,471 0/1:28,26:54:17.83:18,0,752 0/1:22,37:59:99:212,0,594 0/1:29,19:48:99:162,0,876 0/1:24,15:39:70.43:70,0,648 0/1:14,23:37:92.23:92,0,377 0/1:21,20:41:99:216,0,565 0/1:20,19:39:99:139,0,583 0/1:20,25:45:99:262,0,589 0/1:74,75:149:99:596,0,1857 0/1:22,24:46:99:224,0,607 0/1:18,32:50:99:284,0,532 0/1:25,25:50:99:237,0,725 0/1:34,35:69:99:168,0,882 0/1:33,53:86:99:145,0,896 0/1:40,35:75:11.20:11,0,972 0/1:32,35:67:99:138,0,830 0/1:46,47:94:99:315,0,1278 0/1:23,31:54:99:266,0,578 0/1:33,28:61:99:177,0,1017 0/1:24,28:52:99:137,0,666 0/0:14,17:31:13.91:0,14,447 0/1:22,24:46:99:135,0,684 0/1:24,27:51:99:196,0,614 0/1:31,21:52:98.20:98,0,897 0/1:29,31:60:99:191,0,752 0/1:41,31:72:95.41:95,0,1124 0/1:26,33:59:99:147,0,727 0/1:16,24:40:74.20:74,0,435 0/1:30,21:51:56.43:56,0,986 0/1:26,20:46:51.82:52,0,708 0/1:36,30:66:99:124,0,1036 0/1:30,30:60:99:175,0,882 0/1:27,19:46:99:102,0,791 0/1:22,29:51:99:300,0,550 0/1:28,22:50:67.41:67,0,699 0/1:27,27:55:99:196,0,726 19 11210912 . C T 10114.38 . AC=11;AF=0.131;AN=84;BaseQRankSum=-5.610;DP=3448;DS;Dels=0.00;FS=1.612;HRun=0;HaplotypeScore=1.3157;InbreedingCoeff=0.0585;MQ=59.34;MQ0=0;MQRankSum=-0.412;QD=15.58;ReadPosRankSum=-2.294 GT:AD:DP:GQ:PL 0/0:88,1:89:99:0,194,2668 0/0:76,0:76:99:0,214,2536 0/0:61,0:61:99:0,162,1934 0/0:122,0:122:99:0,307,3958 0/0:105,0:105:99:0,277,3650 0/0:96,0:96:99:0,247,3201 0/0:90,0:90:99:0,244,3045 0/0:73,0:74:99:0,196,2535 0/1:25,34:59:99:952,0,704 0/1:43,24:68:99:622,0,1087 0/0:65,0:65:99:0,168,2040 0/0:62,0:62:99:0,175,2101 0/0:81,0:81:99:0,205,2445 0/0:54,0:54:99:0,138,1702 0/0:249,0:250:99:0,641,7873 0/0:56,0:56:99:0,165,1982 0/0:79,0:79:99:0,211,2529 0/0:65,1:67:99:0,141,2091 0/0:92,0:92:99:0,244,2936 0/0:112,0:112:99:0,289,3507 0/0:115,1:116:99:0,271,3564 0/0:59,0:59:99:0,168,2016 0/0:129,1:130:99:0,324,4467 0/0:72,0:72:99:0,190,2439 0/0:85,0:85:99:0,217,2842 0/0:90,0:90:99:0,241,3052 0/0:57,0:57:99:0,153,1815 0/1:37,31:68:99:828,0,967 0/0:61,0:61:99:0,168,1973 0/1:40,34:74:99:966,0,1096 0/1:28,28:56:99:724,0,752 0/0:86,0:86:99:0,229,2823 0/1:24,44:68:99:1246,0,593 1/1:0,49:49:99:1758,147,0 0/1:39,33:72:99:867,0,1068 0/1:30,36:67:99:1068,0,791 0/0:132,0:132:99:0,340,4153 0/0:76,0:76:99:0,211,2522 0/1:30,38:68:99:1083,0,840 0/0:79,0:79:99:0,226,2643 0/0:50,2:52:69.15:0,69,1572 0/0:73,0:73:99:0,196,2331 19 11231085 . G C 5.99 . AC=4;AF=0.048;AN=84;BaseQRankSum=-13.177;DP=1549;Dels=0.00;FS=223.135;HRun=1;HaplotypeScore=1.0048;InbreedingCoeff=-0.1083;MQ=58.17;MQ0=0;MQRankSum=-0.322;QD=0.06;ReadPosRankSum=0.140 GT:AD:DP:GQ:PL 0/0:15,3:18:39.10:0,39,438 0/0:15,5:20:17.41:0,17,399 0/0:13,8:21:2.76:1,0,280 0/0:54,22:76:92.09:0,92,1710 0/0:56,17:74:98.03:0,98,1701 0/0:38,16:54:5.13:0,5,794 0/0:34,8:42:72.18:0,72,876 0/0:46,7:53:99:0,102,1221 0/0:19,8:27:13.46:0,13,427 0/1:13,7:20:28.07:28,0,269 0/1:17,11:28:17.79:18,0,464 0/1:18,11:29:17.08:17,0,369 0/0:16,4:20:3.61:0,4,368 0/0:15,3:18:27.07:0,27,301 0/0:64,22:87:57.56:0,58,1507 0/0:27,6:34:60.17:0,60,701 0/1:20,5:25:22.66:23,0,385 0/0:19,7:26:42.13:0,42,514 0/0:40,14:54:2.72:1,0,850 0/0:37,10:47:69.21:0,69,835 0/0:23,10:33:1.42:4,0,495 0/0:30,8:38:71.31:0,71,780 0/0:80,27:107:64.18:0,64,1977 0/0:34,10:45:43.41:0,43,760 0/0:36,13:49:84.16:0,84,986 0/0:34,14:48:75.20:0,75,903 0/0:15,9:24:2.76:1,0,281 0/0:14,7:21:7.56:0,8,396 0/0:20,7:27:48.08:0,48,529 0/0:20,6:26:41.88:0,42,466 0/0:21,6:27:16.43:0,16,451 0/0:27,5:32:7:0,7,660 0/0:44,7:51:70.56:0,71,1094 0/0:19,4:23:45.13:0,45,544 0/0:19,5:24:45.09:0,45,498 0/0:18,7:25:2.11:0,2,387 0/0:30,9:39:72.19:0,72,828 0/0:22,6:28:1.92:0,2,548 0/0:27,9:36:50.79:0,51,566 0/0:20,10:30:48.13:0,48,588 0/0:18,7:25:5.49:0,5,361 0/0:13,5:18:27.08:0,27,318 19 11323858 . G A 1613.50 . AC=3;AF=0.036;AN=84;BaseQRankSum=2.761;DP=1993;Dels=0.00;FS=0.479;HRun=1;HaplotypeScore=1.2945;InbreedingCoeff=-0.0370;MQ=58.93;MQ0=0;MQRankSum=0.439;QD=11.95;ReadPosRankSum=2.022 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,105,1282 0/0:33,0:33:90.24:0,90,1048 0/0:23,0:23:60.16:0,60,708 0/0:117,0:118:99:0,289,3659 0/0:93,0:93:99:0,244,3080 0/0:71,0:71:99:0,190,2380 0/0:53,0:53:99:0,123,1598 0/1:32,32:64:99:902,0,883 0/0:31,0:31:90.24:0,90,1053 0/0:38,0:38:93.28:0,93,1142 0/0:32,0:32:87.23:0,87,1006 0/0:36,0:36:99:0,102,1201 0/0:30,0:30:72.20:0,72,858 0/0:32,0:32:93.26:0,93,1079 0/0:134,0:135:99:0,337,4115 0/0:31,0:31:90.25:0,90,1032 0/0:40,0:40:99:0,108,1313 0/0:28,0:28:72.21:0,72,850 0/0:51,0:51:99:0,138,1642 0/0:70,0:70:99:0,180,2170 0/0:54,0:54:99:0,138,1638 0/0:44,0:44:99:0,114,1333 0/0:109,0:109:99:0,268,3407 0/0:41,0:41:99:0,102,1328 0/0:69,0:70:99:0,166,2155 0/0:40,0:40:99:0,105,1280 0/1:22,12:34:99:290,0,604 0/1:19,18:37:99:497,0,513 0/0:27,0:27:69.20:0,69,821 0/0:23,0:23:66.18:0,66,765 0/0:30,0:30:87.23:0,87,995 0/0:65,0:65:99:0,162,1936 0/0:50,0:50:99:0,138,1608 0/0:23,0:23:69.20:0,69,803 0/0:32,0:32:81.22:0,81,946 0/0:36,0:36:87.23:0,87,1044 0/0:45,0:45:99:0,114,1336 0/0:35,0:35:96.25:0,96,1092 0/0:37,0:37:93.23:0,93,1096 0/0:35,0:35:96.28:0,96,1162 0/0:37,0:37:96.28:0,96,1144 0/0:35,0:35:93.27:0,93,1109 19 11323999 . C T 106.57 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.975;DP=652;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4725;InbreedingCoeff=-0.0130;MQ=58.84;MQ0=0;MQRankSum=0.594;QD=10.66;ReadPosRankSum=-0.315 GT:AD:DP:GQ:PL 0/0:13,0:13:33.07:0,33,366 0/0:10,0:10:27.02:0,27,276 0/0:6,0:6:18.05:0,18,214 0/0:35,0:35:96.28:0,96,1147 0/0:22,0:22:60.14:0,60,694 0/0:16,0:16:42.13:0,42,518 0/0:16,0:16:42.10:0,42,487 0/0:18,0:18:45.14:0,45,569 0/0:8,0:8:21.04:0,21,218 0/0:13,0:13:36.07:0,36,410 0/0:18,0:18:51.06:0,51,518 0/0:11,0:11:27.07:0,27,323 0/0:11,0:11:24.05:0,24,255 0/0:14,0:14:39.10:0,39,437 0/0:39,0:39:99:0,102,1160 0/0:13,0:13:33.08:0,33,358 0/0:11,0:11:33.08:0,33,372 0/0:9,0:9:24.05:0,24,252 0/0:27,0:27:78.21:0,78,897 0/0:26,0:26:72.18:0,72,791 0/0:17,0:17:51.10:0,51,541 0/0:10,0:10:30.04:0,30,309 0/0:24,0:24:69.18:0,69,805 0/0:6,0:6:18.03:0,18,200 0/0:14,0:14:42.12:0,42,508 0/0:11,0:11:24.06:0,24,290 0/0:14,0:14:39.11:0,39,435 0/0:19,0:20:51.11:0,51,566 0/0:6,0:6:18.04:0,18,196 0/0:14,0:14:36.10:0,36,414 0/1:5,5:10:99:153,0,127 0/0:23,0:23:63.17:0,63,712 0/0:18,0:18:54.14:0,54,604 0/0:12,0:12:36.09:0,36,389 0/0:17,0:17:45.11:0,45,497 0/0:13,0:13:36.10:0,36,420 0/0:26,0:26:72.19:0,72,811 0/0:16,0:16:39.07:0,39,432 0/0:11,0:11:33.09:0,33,378 0/0:11,0:11:30.07:0,30,321 0/0:11,0:11:27.06:0,27,278 0/0:12,0:12:27.07:0,27,310 19 11324965 . C T 1759.49 . AC=5;AF=0.060;AN=84;BaseQRankSum=-8.518;DP=925;Dels=0.00;FS=6.118;HRun=0;HaplotypeScore=0.5223;InbreedingCoeff=-0.0635;MQ=58.90;MQ0=0;MQRankSum=0.459;QD=11.81;ReadPosRankSum=2.198 GT:AD:DP:GQ:PL 0/0:26,0:26:66.18:0,66,813 0/0:8,0:8:18.06:0,18,224 0/0:18,0:18:54.15:0,54,652 0/0:14,0:14:42.11:0,42,537 0/0:26,0:26:75.24:0,75,993 0/0:11,0:11:33.10:0,33,420 0/0:13,0:13:39.11:0,39,489 0/0:10,0:10:30.10:0,30,402 0/0:18,0:19:51.14:0,51,623 0/0:18,0:18:48.15:0,48,590 0/0:22,0:23:60.17:0,60,704 0/0:24,0:24:72.23:0,72,904 0/0:16,0:16:36.08:0,36,438 0/0:18,0:18:51.16:0,51,622 0/1:35,31:67:99:876,0,809 0/0:22,0:22:63.16:0,63,751 0/1:9,12:22:99:314,0,253 0/0:23,0:23:69.22:0,69,856 0/0:38,0:38:96.30:0,96,1195 0/0:31,0:31:84.26:0,84,1033 0/0:35,0:36:99:0,102,1233 0/0:21,0:21:63.20:0,63,787 0/1:15,12:27:99:320,0,524 0/0:12,0:12:36.11:0,36,464 0/0:14,0:14:42.13:0,42,536 0/0:19,0:19:57.18:0,57,733 0/0:17,0:17:48.13:0,48,555 0/0:18,0:18:48.15:0,48,605 0/0:21,0:21:57.18:0,57,715 0/0:20,0:20:54.17:0,54,674 0/0:25,0:25:75.23:0,75,939 0/0:39,0:40:99:0,111,1339 0/0:29,0:29:81.21:0,81,971 0/0:19,0:19:54.14:0,54,646 0/0:25,0:25:66.20:0,66,815 0/0:21,0:21:60.16:0,60,731 0/0:29,0:29:78.22:0,78,943 0/0:17,0:17:45.09:0,45,528 0/0:22,0:23:63.19:0,63,758 0/1:13,6:19:99:165,0,287 0/1:7,7:14:99:181,0,193 0/0:12,0:12:36.10:0,36,427 19 11325031 . C G 998.79 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.894;DP=2285;Dels=0.00;FS=2.855;HRun=0;HaplotypeScore=1.2849;InbreedingCoeff=-0.0244;MQ=59.26;MQ0=0;MQRankSum=0.633;QD=14.91;ReadPosRankSum=-0.587 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,114,1407 0/0:40,0:40:99:0,117,1422 0/0:43,0:43:99:0,120,1450 0/0:81,0:82:99:0,226,2958 0/0:49,0:49:99:0,141,1892 0/0:45,0:45:99:0,129,1682 0/0:39,0:39:99:0,105,1383 0/0:54,0:54:99:0,154,2045 0/0:42,0:42:99:0,123,1492 0/0:37,0:37:96.30:0,96,1207 0/0:50,0:50:99:0,144,1737 0/0:39,0:39:99:0,117,1437 0/0:38,0:38:99:0,105,1280 0/0:56,1:57:99:0,115,1828 0/0:155,0:156:99:0,394,4867 0/0:39,0:40:99:0,108,1300 0/0:26,0:26:78.21:0,78,930 0/0:53,0:53:99:0,144,1772 0/0:88,0:88:99:0,247,2930 0/0:97,0:97:99:0,259,3198 0/0:86,0:87:99:0,235,2846 0/0:59,0:59:99:0,169,2060 0/0:79,0:79:99:0,217,2837 0/0:37,1:38:76.69:0,77,1330 0/0:37,0:37:99:0,99,1322 0/0:42,0:42:99:0,120,1545 0/1:13,19:32:99:596,0,383 0/1:19,16:35:99:465,0,608 0/0:43,0:43:99:0,120,1494 0/0:37,0:37:99:0,99,1211 0/0:53,0:53:99:0,153,1880 0/0:99,0:99:99:0,271,3333 0/0:75,0:75:99:0,211,2542 0/0:39,0:39:99:0,108,1324 0/0:57,0:57:99:0,153,1873 0/0:43,0:43:99:0,123,1498 0/0:79,0:79:99:0,202,2484 0/0:42,0:42:99:0,114,1411 0/0:62,1:63:99:0,149,2077 0/0:51,0:51:99:0,144,1759 0/0:36,0:36:99:0,102,1248 0/0:44,0:44:99:0,123,1514 19 11325229 . C T 2007.34 . AC=3;AF=0.036;AN=84;BaseQRankSum=-3.590;DP=2883;Dels=0.00;FS=7.133;HRun=1;HaplotypeScore=1.7661;InbreedingCoeff=-0.0370;MQ=59.26;MQ0=1;MQRankSum=-0.768;QD=12.39;ReadPosRankSum=0.664 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,160,2065 0/0:54,0:54:99:0,153,1931 0/0:42,0:42:99:0,117,1495 0/0:96,0:96:99:0,253,3379 0/0:77,0:77:99:0,214,2861 0/0:66,0:66:99:0,178,2388 0/0:82,0:82:99:0,220,2967 0/1:31,28:59:99:876,0,886 0/0:51,0:51:99:0,141,1791 0/0:44,0:44:99:0,111,1465 0/0:38,0:38:99:0,108,1380 0/0:57,0:57:99:0,166,2095 0/0:39,0:39:99:0,108,1386 0/0:57,0:57:99:0,153,1981 0/0:184,0:184:99:0,466,6007 0/0:62,0:62:99:0,169,2154 0/0:50,0:50:99:0,141,1797 0/0:68,0:68:99:0,196,2502 0/0:115,0:115:99:0,313,3960 0/0:125,0:125:99:0,331,4222 0/0:132,0:133:99:0,361,4541 0/0:83,0:83:99:0,232,2916 0/0:112,0:112:99:0,295,4032 0/0:56,0:56:99:0,135,1836 0/0:70,0:70:99:0,181,2425 0/0:45,0:45:99:0,120,1617 0/1:27,20:47:99:536,0,832 0/1:31,25:56:99:671,0,932 0/0:41,0:41:99:0,120,1542 0/0:50,0:50:99:0,141,1793 0/0:55,0:55:99:0,150,1922 0/0:84,0:84:99:0,217,2784 0/0:68,0:68:99:0,193,2439 0/0:67,0:67:99:0,187,2375 0/0:51,0:51:99:0,141,1813 0/0:59,0:59:99:0,172,2191 0/0:123,0:123:99:0,313,3955 0/0:45,0:45:99:0,126,1618 0/0:53,0:53:99:0,150,1894 0/0:60,0:60:99:0,178,2230 0/0:44,0:44:99:0,129,1644 0/0:57,0:57:99:0,166,2103 19 11343985 . G T 36.09 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.998;DP=1019;Dels=0.00;FS=78.865;HRun=2;HaplotypeScore=0.8636;InbreedingCoeff=0.3072;MQ=58.54;MQ0=0;MQRankSum=0.031;QD=1.44;ReadPosRankSum=-3.444 GT:AD:DP:GQ:PL 0/0:19,1:20:45.09:0,45,495 0/0:13,3:16:10.40:0,10,347 0/0:6,4:10:12:0,12,118 0/0:42,10:52:33.94:0,34,908 0/0:35,9:45:54.15:0,54,669 0/0:32,9:41:66.14:0,66,777 0/0:28,5:33:37.45:0,37,669 0/0:36,5:41:60.16:0,60,701 0/0:15,1:16:27.07:0,27,315 0/0:15,3:18:1.39:0,1,298 0/0:15,4:19:33.08:0,33,393 0/0:13,1:15:2.77:1,0,300 0/0:16,3:19:36.10:0,36,407 0/0:14,1:15:39.11:0,39,474 0/0:51,11:62:84.57:0,85,1161 0/0:15,1:16:30.09:0,30,356 0/0:10,3:13:26.88:0,27,277 0/0:16,4:20:15.63:0,16,491 0/0:30,4:34:12.92:0,13,670 0/0:42,6:48:60.61:0,61,1002 0/0:20,9:29:42.13:0,42,511 0/0:19,0:19:48.13:0,48,563 0/0:46,17:63:99:0,105,1284 0/0:19,1:21:42.07:0,42,487 0/0:35,9:44:51.46:0,51,795 0/0:27,7:34:60.18:0,60,755 0/1:4,1:5:1.76:28,3,0 0/0:16,5:21:45.11:0,45,531 0/1:14,6:20:72.73:73,0,386 0/0:10,3:13:24.05:0,24,285 0/0:14,2:16:30.05:0,30,327 0/0:24,2:26:54.11:0,54,633 0/0:19,3:22:48.13:0,48,558 0/0:15,2:17:30.08:0,30,349 0/0:9,1:10:18.05:0,18,216 0/0:7,3:10:15.02:0,15,157 0/0:25,7:32:31.85:0,32,736 0/0:8,4:12:18.05:0,18,210 0/0:10,1:11:24.04:0,24,282 0/0:14,2:16:33.08:0,33,378 0/0:9,3:12:21.04:0,21,221 0/0:11,2:13:27.05:0,27,289 19 11346414 . A G 102.49 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.737;DP=429;Dels=0.00;FS=1.855;HRun=0;HaplotypeScore=0.3088;InbreedingCoeff=-0.0241;MQ=58.23;MQ0=0;MQRankSum=0.033;QD=6.83;ReadPosRankSum=1.436 GT:AD:DP:GQ:PL 0/0:6,0:6:15.05:0,15,183 0/0:4,0:4:12.04:0,12,143 0/0:11,0:11:27.08:0,27,338 0/0:11,0:11:33.10:0,33,401 0/0:11,0:11:30.10:0,30,385 0/0:9,0:9:21.07:0,21,277 0/0:9,0:9:27.08:0,27,335 0/0:11,0:11:30.09:0,30,375 0/0:13,0:13:39.12:0,39,468 0/0:13,0:13:36.11:0,36,443 0/0:7,0:7:18.06:0,18,233 0/0:11,0:11:30.09:0,30,366 0/0:2,0:2:6.02:0,6,70 0/0:12,0:12:30.09:0,30,368 0/0:22,0:22:51.16:0,51,648 0/0:8,0:8:24.07:0,24,289 0/0:13,0:13:36.11:0,36,437 0/0:3,0:3:9.03:0,9,108 0/0:21,0:21:54.17:0,54,685 0/0:22,0:22:57.15:0,57,701 0/0:19,0:19:48.13:0,48,583 0/0:5,0:5:15.05:0,15,185 0/0:11,0:11:24.08:0,24,314 0/0:7,0:7:18.06:0,18,221 0/0:9,0:9:24.07:0,24,301 0/0:8,0:8:18.06:0,18,239 0/0:1,0:1:3.01:0,3,37 0/0:7,0:7:21.06:0,21,245 0/0:13,0:13:36.11:0,36,432 0/0:6,0:6:15.05:0,15,192 0/0:7,0:7:21.07:0,21,260 0/0:20,0:20:42.14:0,42,565 0/1:10,5:15:99:149,0,265 0/0:6,0:6:18.06:0,18,227 0/0:13,0:13:36.10:0,36,437 0/0:8,0:8:24.07:0,24,281 0/0:15,0:15:45.14:0,45,564 0/0:12,0:12:24.08:0,24,325 0/0:4,0:4:12.03:0,12,136 0/0:9,0:9:27.08:0,27,320 0/0:6,0:6:18.06:0,18,220 0/0:9,0:9:27.08:0,27,329 19 11348851 . A C 75.20 . AC=1;AF=0.012;AN=84;BaseQRankSum=-20.764;DP=2435;Dels=0.00;FS=113.447;HRun=1;HaplotypeScore=3.9062;InbreedingCoeff=-0.0218;MQ=59.00;MQ0=0;MQRankSum=-0.733;QD=1.12;ReadPosRankSum=-7.127 GT:AD:DP:GQ:PL 0/0:19,3:22:54.12:0,54,626 0/0:41,8:49:99:0,105,1164 0/0:34,2:36:81.20:0,81,929 0/0:147,35:183:99:0,367,4080 0/0:104,25:130:99:0,181,2934 0/0:76,24:100:99:0,177,2178 0/0:72,17:89:99:0,156,1993 0/0:89,11:100:99:0,222,2472 0/0:40,4:44:99:0,105,1226 0/0:23,7:30:36.44:0,36,633 0/0:19,4:23:27.42:0,27,531 0/0:27,5:32:69.14:0,69,745 0/0:28,3:31:56.48:0,56,800 0/0:29,13:43:84.17:0,84,890 0/0:79,22:102:99:0,127,2150 0/0:32,7:39:61.55:0,62,931 0/0:22,10:32:39.55:0,40,715 0/0:28,5:33:72.19:0,72,819 0/1:44,23:67:99:121,0,1278 0/0:68,10:79:99:0,165,1842 0/0:47,18:66:3.39:0,3,1307 0/0:46,5:51:99:0,123,1291 0/0:142,34:176:99:0,352,4284 0/0:45,13:59:99:0,108,1207 0/0:94,14:109:99:0,203,2556 0/0:71,14:85:99:0,153,1981 0/0:30,4:34:75.17:0,75,851 0/0:22,7:30:2.86:0,3,545 0/0:28,4:33:49.52:0,50,815 0/0:33,5:38:24.88:0,25,794 0/0:26,5:31:72.16:0,72,798 0/0:62,8:70:99:0,142,1810 0/0:44,14:58:95.38:0,95,1288 0/0:25,2:27:57.14:0,57,658 0/0:19,12:31:25.59:0,26,594 0/0:25,5:30:47.45:0,47,728 0/0:46,19:65:13.54:0,14,1223 0/0:30,7:37:87.20:0,87,963 0/0:19,5:24:54.13:0,54,622 0/0:26,6:32:18.96:0,19,733 0/0:22,6:28:10.76:0,11,548 0/0:51,6:57:99:0,113,1511 19 11348911 . A G 4993.27 . AC=9;AF=0.107;AN=84;BaseQRankSum=2.631;DP=1668;Dels=0.00;FS=0.468;HRun=1;HaplotypeScore=1.2525;InbreedingCoeff=0.1289;MQ=59.36;MQ0=0;MQRankSum=-0.699;QD=17.16;ReadPosRankSum=-1.502 GT:AD:DP:GQ:PL 0/0:32,0:33:93.29:0,93,1161 0/0:22,0:22:63.19:0,63,775 0/0:24,0:24:69.19:0,69,837 0/0:104,0:104:99:0,301,3801 0/0:97,1:98:99:0,250,3522 0/0:62,0:62:99:0,175,2257 0/0:54,0:54:99:0,150,1940 0/1:22,29:51:99:955,0,687 0/0:36,0:36:99:0,105,1303 0/0:29,0:29:87.27:0,87,1073 0/0:28,0:28:81.20:0,81,954 0/0:23,0:23:69.21:0,69,843 0/0:14,0:14:39.12:0,39,495 0/0:26,0:26:69.22:0,69,877 0/0:69,0:71:99:0,196,2391 0/0:26,0:26:72.22:0,72,899 0/1:16,14:31:99:356,0,488 0/0:20,0:20:57.16:0,57,708 0/0:47,0:47:99:0,132,1622 0/0:51,0:51:99:0,138,1707 0/0:60,0:60:99:0,172,2156 0/0:31,0:31:90.25:0,90,1089 0/0:106,0:106:99:0,298,3812 0/0:45,0:45:99:0,135,1714 0/1:36,35:71:99:1129,0,1132 0/0:56,0:56:99:0,163,2069 0/1:10,9:19:99:269,0,279 1/1:0,30:30:84.25:1041,84,0 0/0:21,0:21:63.17:0,63,777 0/1:11,8:19:99:238,0,325 0/0:19,0:19:57.18:0,57,716 0/0:46,0:46:99:0,126,1576 0/1:21,22:43:99:654,0,621 0/0:21,0:21:63.20:0,63,784 0/0:22,0:22:66.21:0,66,814 0/0:25,0:25:69.21:0,69,865 0/0:44,0:44:99:0,132,1615 0/1:14,13:27:99:351,0,441 0/0:30,0:30:90.27:0,90,1097 0/0:28,0:28:81.25:0,81,1002 0/0:21,0:21:63.20:0,63,788 0/0:34,0:34:99:0,99,1225 19 11348960 . G A 1159.57 . AC=6;AF=0.071;AN=84;BaseQRankSum=0.445;DP=751;Dels=0.00;FS=0.856;HRun=0;HaplotypeScore=1.0332;InbreedingCoeff=-0.0774;MQ=59.14;MQ0=0;MQRankSum=0.283;QD=13.18;ReadPosRankSum=0.457 GT:AD:DP:GQ:PL 0/0:24,0:24:66.18:0,66,784 0/0:10,0:10:27.06:0,27,303 0/0:13,0:13:39.11:0,39,469 0/0:40,0:41:99:0,120,1447 0/0:31,1:32:53.96:0,54,1092 0/0:18,0:19:51.17:0,51,679 0/0:16,0:16:48.10:0,48,557 0/0:16,0:16:48.15:0,48,598 0/0:16,0:16:45.12:0,45,526 0/0:11,0:11:33.07:0,33,391 0/0:7,0:7:18.06:0,18,227 0/0:12,0:12:36.08:0,36,394 0/0:11,0:11:33.09:0,33,396 0/0:15,0:15:45.13:0,45,543 0/0:46,0:46:99:0,132,1556 0/0:19,0:19:54.15:0,54,632 0/1:8,4:12:79.33:79,0,245 0/0:8,0:8:21.05:0,21,245 0/0:24,0:24:63.17:0,63,729 0/0:31,0:31:81.24:0,81,1014 0/0:28,0:28:72.22:0,72,896 0/0:14,0:14:33.08:0,33,375 0/0:35,0:35:99:0,99,1274 0/0:21,0:21:60.19:0,60,774 0/1:11,12:23:99:401,0,330 0/0:24,0:24:69.21:0,69,861 0/0:9,0:9:27.08:0,27,319 0/1:7,6:13:99:177,0,211 0/0:13,0:14:33.09:0,33,385 0/1:4,3:7:90.69:91,0,127 0/0:15,0:15:45.13:0,45,538 0/0:15,0:15:42.12:0,42,484 0/1:9,11:20:99:332,0,263 0/0:12,0:12:36.07:0,36,394 0/0:9,0:9:27.05:0,27,298 0/0:16,0:16:42.11:0,42,491 0/0:19,0:19:45.12:0,45,527 0/1:6,6:13:99:186,0,149 0/0:25,0:25:72.21:0,72,874 0/0:14,0:14:42.11:0,42,500 0/0:12,0:12:36.10:0,36,424 0/0:10,0:10:30.09:0,30,355 19 11348967 . C T 438.06 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.381;DP=660;Dels=0.00;FS=4.835;HRun=0;HaplotypeScore=0.9177;InbreedingCoeff=-0.0253;MQ=59.00;MQ0=0;MQRankSum=0.393;QD=16.22;ReadPosRankSum=-0.056 GT:AD:DP:GQ:PL 0/0:23,0:23:69.18:0,69,760 0/0:8,0:8:21.06:0,21,232 0/0:15,0:15:42.11:0,42,456 0/0:35,0:35:99:0,105,1183 0/0:28,0:28:84.23:0,84,958 0/0:15,0:15:45.13:0,45,534 0/0:11,0:11:33.10:0,33,393 0/0:17,0:17:48.13:0,48,553 0/0:13,0:13:39.10:0,39,432 0/0:13,0:13:39.10:0,39,424 0/0:10,0:10:30.07:0,30,322 0/0:11,0:11:33.07:0,33,354 0/0:10,0:10:30.07:0,30,315 0/0:18,0:18:54.14:0,54,591 0/0:43,0:43:99:0,123,1333 0/0:16,0:16:45.12:0,45,504 0/0:10,0:10:27.07:0,27,304 0/0:9,0:9:21.05:0,21,228 0/0:25,0:25:72.19:0,72,800 0/0:25,0:25:69.17:0,69,754 0/0:23,0:23:63.16:0,63,694 0/0:12,0:12:36.07:0,36,371 0/0:31,0:31:87.23:0,87,1012 0/1:7,5:12:99:143,0,217 0/0:18,0:18:54.14:0,54,620 0/1:4,11:15:93.84:358,0,94 0/0:7,0:7:21.05:0,21,229 0/0:10,0:10:27.06:0,27,285 0/0:13,0:13:36.06:0,36,372 0/0:5,0:5:15.04:0,15,168 0/0:14,0:14:42.11:0,42,459 0/0:12,0:12:36.08:0,36,393 0/0:14,0:14:39.09:0,39,419 0/0:8,0:8:24.06:0,24,266 0/0:9,0:9:27.06:0,27,285 0/0:17,0:17:51.12:0,51,543 0/0:15,0:15:42.10:0,42,456 0/0:12,0:12:36.06:0,36,367 0/0:25,0:25:75.17:0,75,800 0/0:12,0:12:36.09:0,36,402 0/0:9,0:9:27.07:0,27,294 0/0:12,0:12:36.10:0,36,401 19 11362861 . C G 590.08 . AC=4;AF=0.048;AN=84;BaseQRankSum=-2.869;DP=327;Dels=0.00;FS=1.797;HRun=0;HaplotypeScore=0.1509;InbreedingCoeff=-0.0657;MQ=58.48;MQ0=0;MQRankSum=0.185;QD=15.13;ReadPosRankSum=1.447 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,190 0/0:7,0:7:18.04:0,18,204 0/1:2,7:9:48.16:194,0,48 0/1:7,5:12:99:131,0,228 0/1:1,8:9:14.50:246,0,15 0/0:4,0:4:12.04:0,12,162 0/0:4,0:4:9.03:0,9,124 0/0:1,0:1:3.01:0,3,41 0/0:3,0:3:9.03:0,9,107 0/0:2,0:2:6.02:0,6,78 0/0:8,0:8:18.06:0,18,236 0/0:7,0:7:21.07:0,21,266 0/0:8,0:8:24.07:0,24,291 0/0:6,0:6:15.05:0,15,191 0/0:27,0:27:66.21:0,66,848 0/0:13,0:13:39.12:0,39,486 0/0:6,0:6:12.04:0,12,148 0/0:6,0:6:15.05:0,15,193 0/0:12,0:12:33.10:0,33,393 0/1:5,4:9:99:105,0,123 0/0:15,0:15:42.13:0,42,527 0/0:11,0:11:33.10:0,33,401 0/0:9,0:9:24.06:0,24,299 0/0:7,0:7:21.06:0,21,257 0/0:4,0:4:12.04:0,12,166 0/0:3,0:3:9.03:0,9,113 0/0:1,0:1:3.01:0,3,35 0/0:13,0:13:33.10:0,33,399 0/0:2,0:2:6.02:0,6,67 0/0:3,0:3:9.01:0,9,90 0/0:4,0:4:12.04:0,12,150 0/0:18,0:18:48.15:0,48,617 0/0:9,0:9:27.07:0,27,324 0/0:10,0:10:24.07:0,24,296 0/0:11,0:11:33.10:0,33,411 0/0:8,0:8:24.07:0,24,289 0/0:7,0:7:15.03:0,15,181 0/0:5,0:5:15.04:0,15,180 0/0:10,0:10:27.06:0,27,317 0/0:7,0:7:21.07:0,21,264 0/0:4,0:4:12.04:0,12,149 0/0:8,0:8:24.06:0,24,276 19 11447886 . C T 7739.89 . AC=3;AF=0.036;AN=84;BaseQRankSum=10.322;DP=7969;DS;Dels=0.00;FS=25.870;HRun=0;HaplotypeScore=13.6049;InbreedingCoeff=-0.0370;MQ=58.42;MQ0=0;MQRankSum=0.795;QD=13.14;ReadPosRankSum=2.457 GT:AD:DP:GQ:PL 0/0:156,0:157:99:0,388,4119 0/0:180,0:181:99:0,448,4732 0/0:163,0:164:99:0,433,4547 0/0:226,0:226:99:0,566,6628 0/0:216,0:218:99:0,550,6493 0/0:187,0:188:99:0,469,5455 0/1:90,105:195:99:2732,0,2050 0/1:97,96:195:99:2577,0,2410 0/0:185,0:185:99:0,484,5247 0/0:166,0:168:99:0,418,4555 0/0:147,0:148:99:0,382,4139 0/0:172,0:172:99:0,433,4618 0/0:154,1:156:99:0,366,4132 0/0:181,0:181:99:0,469,5089 0/0:247,1:250:99:0,606,6926 0/0:178,0:181:99:0,451,4832 0/0:172,0:174:99:0,418,4456 0/0:168,0:171:99:0,439,4718 0/0:237,0:240:99:0,634,6797 0/0:248,0:250:99:0,647,7056 0/0:238,0:242:99:0,643,6952 0/0:211,0:212:99:0,517,5466 0/0:239,0:239:99:0,574,6714 0/0:167,0:169:99:0,445,5195 0/0:195,0:201:99:0,514,5994 0/0:176,1:177:99:0,412,5268 0/0:158,0:159:99:0,403,4297 0/0:171,0:171:99:0,430,4581 0/0:155,1:158:99:0,330,3859 0/0:181,0:183:99:0,451,4876 0/0:186,0:186:99:0,487,5262 0/0:247,0:250:99:0,637,6956 0/1:101,98:199:99:2431,0,2257 0/0:169,0:172:99:0,403,4293 0/0:174,0:177:99:0,445,4719 0/0:164,0:165:99:0,388,4180 0/0:237,0:240:99:0,610,6603 0/0:191,0:194:99:0,463,4974 0/0:162,0:162:99:0,400,4281 0/0:176,0:177:99:0,442,4743 0/0:156,1:159:99:0,388,4146 0/0:175,0:176:99:0,463,4896 19 11447932 . A C 5876.20 . AC=2;AF=0.024;AN=84;BaseQRankSum=-9.015;DP=10237;DS;Dels=0.00;FS=11.775;HRun=0;HaplotypeScore=5.0151;InbreedingCoeff=-0.0244;MQ=59.02;MQ0=0;MQRankSum=1.959;QD=12.77;ReadPosRankSum=0.619 GT:AD:DP:GQ:PL 0/0:248,0:250:99:0,686,8269 0/0:246,0:247:99:0,677,8292 0/0:223,0:225:99:0,623,7513 0/0:249,0:250:99:0,716,8721 0/0:247,0:248:99:0,710,8796 0/0:243,0:247:99:0,683,8510 0/0:242,0:244:99:0,650,7975 0/0:239,1:241:99:0,671,8154 0/0:246,1:249:99:0,656,7940 0/0:230,0:232:99:0,617,7406 0/0:223,0:226:99:0,623,7562 0/0:250,0:250:99:0,698,8414 0/0:202,0:202:99:0,560,6796 0/0:245,1:247:99:0,686,8297 0/0:249,0:249:99:0,707,8285 0/0:236,0:238:99:0,656,7934 0/0:247,0:250:99:0,671,8202 0/0:239,0:241:99:0,668,8090 0/0:249,0:250:99:0,674,7957 0/0:245,0:248:99:0,701,8323 0/0:249,1:250:99:0,659,7869 0/0:244,0:248:99:0,677,8106 0/0:247,0:250:99:0,710,8780 0/0:241,1:244:99:0,680,8272 0/0:244,0:246:99:0,671,8264 0/0:248,0:250:99:0,707,8701 0/1:101,109:210:99:2820,0,2823 0/1:126,122:250:99:3056,0,3582 0/0:233,1:235:99:0,626,7517 0/0:245,2:250:99:0,671,8174 0/0:246,2:250:99:0,686,8315 0/0:246,0:250:99:0,659,8015 0/0:247,0:250:99:0,668,8003 0/0:245,0:246:99:0,680,8243 0/0:243,0:244:99:0,659,7936 0/0:244,0:249:99:0,668,8046 0/0:248,0:250:99:0,674,8125 0/0:245,1:247:99:0,668,8131 0/0:247,3:250:99:0,680,8262 0/0:243,0:246:99:0,674,8187 0/0:239,0:240:99:0,674,8030 0/0:243,0:247:99:0,689,8430 19 11459665 . G GA 2339.75 . AC=15;AF=0.179;AN=84;BaseQRankSum=3.641;DP=462;FS=4.750;HRun=1;HaplotypeScore=29.5283;InbreedingCoeff=0.2601;MQ=59.13;MQ0=0;MQRankSum=-0.494;QD=16.95;ReadPosRankSum=0.097 GT:AD:DP:GQ:PL 0/0:10,0:10:30.08:0,30,376 0/0:11,0:11:33.11:0,33,429 0/0:9,0:9:27.08:0,27,341 0/0:12,0:12:36.12:0,36,468 0/0:18,0:18:48.16:0,48,624 0/0:10,0:10:30.10:0,30,390 0/0:10,0:8:27.09:0,27,351 0/0:13,0:13:39.11:0,39,493 0/0:10,0:10:30.10:0,30,390 0/1:4,5:9:91.86:201,0,92 0/0:10,0:10:30.10:0,30,390 0/0:5,0:5:15.05:0,15,195 0/0:7,0:7:18.06:0,18,226 0/0:8,0:8:21.07:0,21,273 0/1:16,10:26:99:378,0,458 0/1:8,4:12:99:147,0,240 1/1:0,6:6:18.06:270,18,0 0/0:7,0:7:21.07:0,21,273 0/0:19,0:19:48.15:0,48,614 0/1:12,3:15:80.80:81,0,337 0/0:17,0:17:51.16:0,51,649 0/0:10,0:10:27.07:0,27,335 0/0:23,0:22:60.19:0,60,775 0/1:8,5:11:99:186,0,273 0/1:6,2:8:65.89:66,0,210 1/1:0,7:6:21.06:295,21,0 0/1:4,2:6:61.83:62,0,102 0/0:10,0:10:30.10:0,30,390 1/1:0,11:11:33.10:465,33,0 0/0:15,0:15:45.15:0,45,585 0/0:9,0:9:24.08:0,24,312 0/0:12,0:12:36.12:0,36,468 0/0:7,0:7:21.07:0,21,273 0/0:9,0:9:27.09:0,27,351 0/0:9,0:9:24.08:0,24,305 0/0:14,0:14:39.13:0,39,507 0/1:12,7:19:99:258,0,400 0/1:3,3:6:98.87:117,0,99 0/0:9,0:9:24.08:0,24,306 0/0:5,0:5:15.05:0,15,195 0/0:5,0:5:15.05:0,15,195 0/0:11,0:11:30.10:0,30,390 19 11459669 . G A 1048.71 . AC=10;AF=0.119;AN=84;BaseQRankSum=-0.098;DP=454;Dels=0.00;FS=0.604;HRun=0;HaplotypeScore=0.6622;InbreedingCoeff=0.0805;MQ=59.09;MQ0=0;MQRankSum=-0.388;QD=10.70;ReadPosRankSum=1.529 GT:AD:DP:GQ:PL 0/0:11,0:11:33.09:0,33,376 0/0:12,0:12:36.10:0,36,415 0/0:9,0:9:27.07:0,27,302 0/0:12,0:12:33.10:0,33,419 0/0:15,0:15:45.13:0,45,550 0/0:10,0:10:30.10:0,30,388 0/0:10,0:10:30.10:0,30,381 0/0:12,0:12:36.11:0,36,434 0/0:11,0:11:33.09:0,33,386 0/1:3,5:8:47.47:159,0,47 0/0:10,0:10:30.09:0,30,357 0/0:5,0:5:15.04:0,15,171 0/0:5,0:5:15.04:0,15,169 0/0:9,0:9:24.07:0,24,280 0/1:16,9:25:99:253,0,466 0/1:7,4:11:99:104,0,201 1/1:0,5:5:15.04:174,15,0 0/0:7,0:7:21.05:0,21,234 0/0:21,0:21:57.15:0,57,627 0/0:11,0:11:30.09:0,30,354 0/0:16,0:16:48.14:0,48,568 0/0:8,0:8:24.06:0,24,275 0/0:22,0:22:60.19:0,60,757 0/0:12,0:12:36.11:0,36,451 0/1:7,2:9:43.21:43,0,248 0/1:4,2:6:29.72:30,0,127 0/0:5,0:5:15.04:0,15,173 0/0:14,0:14:36.10:0,36,415 0/1:6,6:12:99:165,0,156 0/0:15,0:15:45.13:0,45,525 0/0:9,0:9:27.08:0,27,323 0/0:13,0:13:36.09:0,36,414 0/0:7,0:7:21.03:0,21,233 0/0:9,0:9:27.08:0,27,315 0/0:9,0:9:27.06:0,27,297 0/0:14,0:14:42.13:0,42,502 0/1:10,6:16:99:169,0,304 0/1:3,3:6:87.55:89,0,88 0/0:9,0:10:27.08:0,27,319 0/0:6,0:6:18.05:0,18,200 0/0:6,0:6:18.05:0,18,211 0/0:11,0:11:30.07:0,30,333 19 11459709 . G A 170.22 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.288;DP=460;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3175;InbreedingCoeff=-0.0171;MQ=58.89;MQ0=0;MQRankSum=0.904;QD=10.64;ReadPosRankSum=0.298 GT:AD:DP:GQ:PL 0/0:10,0:10:27.08:0,27,340 0/0:13,0:13:33.10:0,33,424 0/0:6,0:6:18.06:0,18,225 0/0:5,0:5:15.05:0,15,193 0/0:13,0:13:36.12:0,36,485 0/0:9,0:9:21.07:0,21,286 0/1:8,8:16:99:216,0,207 0/0:14,0:14:42.12:0,42,558 0/0:7,0:7:15.05:0,15,193 0/0:7,0:7:18.06:0,18,229 0/0:7,0:7:18.06:0,18,232 0/0:10,0:10:27.09:0,27,343 0/0:7,0:7:21.07:0,21,272 0/0:10,0:10:30.09:0,30,376 0/0:18,0:18:51.16:0,51,653 0/0:12,0:12:36.12:0,36,458 0/0:6,0:6:18.05:0,18,221 0/0:6,0:6:18.05:0,18,217 0/0:24,0:25:69.22:0,69,871 0/0:16,0:16:36.12:0,36,480 0/0:11,0:11:33.10:0,33,391 0/0:6,0:6:18.03:0,18,210 0/0:24,0:24:63.21:0,63,866 0/0:12,0:12:33.11:0,33,458 0/0:13,0:13:36.12:0,36,489 0/0:4,0:4:12.04:0,12,165 0/0:8,0:8:21.07:0,21,267 0/0:17,0:17:45.14:0,45,584 0/0:15,0:15:42.13:0,42,534 0/0:10,0:10:30.10:0,30,386 0/0:10,0:10:30.09:0,30,373 0/0:12,0:12:33.10:0,33,414 0/0:9,0:9:27.08:0,27,333 0/0:11,0:11:30.10:0,30,381 0/0:7,0:7:21.07:0,21,269 0/0:12,0:12:33.11:0,33,431 0/0:24,0:24:66.20:0,66,830 0/0:4,0:4:9.03:0,9,117 0/0:12,0:12:36.11:0,36,449 0/0:9,0:9:21.07:0,21,275 0/0:5,0:5:15.05:0,15,193 0/0:8,0:8:21.07:0,21,275 19 11464210 . C G 257.91 . AC=11;AF=0.131;AN=84;BaseQRankSum=-9.937;DP=1007;Dels=0.00;FS=211.158;HRun=1;HaplotypeScore=1.0102;InbreedingCoeff=-0.1881;MQ=58.42;MQ0=0;MQRankSum=0.451;QD=1.07;ReadPosRankSum=-7.996 GT:AD:DP:GQ:PL 0/0:15,3:19:33.08:0,33,381 0/1:7,7:14:35.31:35,0,140 0/0:22,11:33:7.92:0,8,340 0/0:32,16:48:2.15:0,2,710 0/1:17,21:38:20.39:20,0,352 0/1:14,12:26:30.38:30,0,325 0/0:10,5:15:27.08:0,27,356 0/0:21,10:31:2.68:0,3,405 0/0:10,7:17:0.38:0,0,239 0/0:9,3:12:23.69:0,24,234 0/1:8,4:12:13.50:13,0,168 0/0:23,4:27:57.15:0,57,698 0/1:13,6:19:31.58:32,0,329 0/0:17,10:27:10.38:0,10,369 0/0:46,21:67:42.49:0,42,1022 0/0:10,3:14:21.04:0,21,234 0/0:15,6:21:27.07:0,27,326 0/1:12,4:16:10.28:10,0,236 0/0:24,12:36:2.93:0,3,678 0/0:30,13:43:51.13:0,51,625 0/1:23,15:38:99:107,0,649 0/0:22,9:31:54.16:0,54,672 0/0:16,15:31:39.09:0,39,493 0/0:17,4:21:21.03:0,21,255 0/1:19,8:27:1.53:2,0,418 0/0:9,1:10:18.05:0,18,223 0/0:13,5:18:1.38:0,1,235 0/0:15,9:24:11.42:0,11,385 0/0:22,3:25:54.15:0,54,675 0/0:12,6:18:30.08:0,30,362 0/0:19,5:24:36.11:0,36,449 0/0:23,4:27:27.43:0,27,575 0/0:17,8:25:2.44:1,0,459 0/0:13,4:17:27.07:0,27,333 0/0:19,5:24:33.03:0,33,374 0/1:4,5:9:14.65:15,0,85 0/1:17,6:24:56.40:56,0,444 0/0:12,5:17:27.03:0,27,307 0/1:11,7:18:62.83:63,0,240 0/0:9,4:13:21.04:0,21,253 0/0:13,3:16:30.08:0,30,362 0/0:11,4:15:24.06:0,24,288 19 11473358 . C G 1667.67 . AC=5;AF=0.060;AN=84;BaseQRankSum=1.337;DP=1280;Dels=0.00;FS=5.919;HRun=0;HaplotypeScore=1.4061;InbreedingCoeff=-0.0774;MQ=58.90;MQ0=0;MQRankSum=1.911;QD=12.63;ReadPosRankSum=-0.212 GT:AD:DP:GQ:PL 0/0:28,0:28:69.18:0,69,834 0/0:28,0:28:75.23:0,75,927 0/0:17,0:17:51.13:0,51,618 0/0:52,0:52:99:0,147,1850 0/0:52,0:52:99:0,132,1648 0/0:38,0:38:99:0,105,1327 0/0:30,0:30:84.27:0,84,1110 0/0:39,0:39:99:0,108,1363 0/0:19,0:19:54.16:0,54,644 0/0:22,0:22:63.20:0,63,790 0/0:25,0:25:75.19:0,75,880 0/0:28,0:28:69.21:0,69,846 0/0:15,1:16:2.90:0,0,368 0/0:28,0:28:84.25:0,84,1009 0/0:77,0:77:99:0,208,2461 0/1:9,10:19:99:288,0,270 0/1:8,15:23:99:456,0,227 0/0:21,0:21:63.18:0,63,766 0/0:33,0:33:96.24:0,96,1112 0/0:65,0:65:99:0,168,2090 0/0:35,0:35:93.23:0,93,1071 0/0:27,0:27:72.17:0,72,857 0/0:59,1:60:99:0,169,2117 0/0:36,0:36:99:0,99,1272 0/1:24,10:35:99:286,0,676 0/1:19,13:32:99:411,0,559 0/0:18,0:18:54.13:0,54,619 0/0:16,0:16:48.10:0,48,547 0/1:10,13:23:99:324,0,244 0/0:23,0:23:60.18:0,60,745 0/0:24,0:24:63.18:0,63,784 0/0:35,0:35:90.27:0,90,1126 0/0:24,0:24:72.22:0,72,894 0/0:31,1:32:87.24:0,87,1015 0/0:17,0:17:39.12:0,39,483 0/0:25,0:25:69.15:0,69,807 0/0:40,0:41:99:0,111,1338 0/0:27,0:27:72.20:0,72,855 0/0:24,0:24:69.21:0,69,864 0/0:15,0:15:45.13:0,45,539 0/0:27,2:29:2.85:0,0,771 0/0:22,0:22:63.16:0,63,747 19 11529440 . A G 165.54 . AC=3;AF=0.036;AN=84;BaseQRankSum=2.005;DP=296;Dels=0.00;FS=15.867;HRun=0;HaplotypeScore=0.3716;InbreedingCoeff=-0.0546;MQ=58.32;MQ0=0;MQRankSum=0.586;QD=7.52;ReadPosRankSum=-0.643 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,167 0/1:4,1:5:21.41:21,0,95 0/0:6,0:6:18.05:0,18,214 0/0:7,0:7:18.04:0,18,203 0/0:7,0:7:21.06:0,21,236 0/0:4,0:4:12.04:0,12,147 0/0:3,0:3:9.03:0,9,107 0/0:4,0:4:12.04:0,12,143 0/0:6,0:6:18.05:0,18,208 0/0:5,0:5:12.04:0,12,149 0/0:7,0:8:15.02:0,15,172 0/0:3,0:4:3.01:0,3,45 0/0:5,0:5:15.05:0,15,177 0/0:9,0:9:27.08:0,27,322 0/0:16,0:16:39.09:0,39,449 0/0:8,0:9:21.06:0,21,257 0/0:8,0:8:18.06:0,18,232 0/0:9,0:9:24.07:0,24,285 0/0:9,0:9:24.06:0,24,276 0/0:15,0:16:42.13:0,42,498 0/1:7,2:9:49.80:50,0,182 0/0:8,0:8:21.06:0,21,240 0/0:11,0:11:27.08:0,27,323 0/0:9,0:9:21.05:0,21,247 0/0:5,1:7:12.03:0,12,143 0/0:5,0:5:15.04:0,15,172 0/0:8,0:8:24.06:0,24,267 0/0:8,0:8:18.06:0,18,229 0/0:8,0:8:24.04:0,24,264 0/0:7,0:7:21.05:0,21,231 0/0:6,0:6:18.03:0,18,196 0/1:3,5:8:78.97:169,0,79 0/0:10,0:10:18.05:0,18,231 0/0:3,0:3:9.03:0,9,102 0/0:5,0:5:15.04:0,15,174 0/0:4,0:4:12.04:0,12,143 0/0:9,0:9:21.06:0,21,252 0/0:5,0:5:12.03:0,12,143 0/0:6,0:6:18.03:0,18,187 0/0:6,0:6:18.05:0,18,208 0/0:4,0:4:12.03:0,12,136 0/0:5,0:5:15.05:0,15,183 19 11537377 . G A 358.15 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.520;DP=1591;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.9032;InbreedingCoeff=-0.0121;MQ=58.73;MQ0=0;MQRankSum=0.334;QD=15.57;ReadPosRankSum=-1.914 GT:AD:DP:GQ:PL 0/0:32,0:32:93.28:0,93,1131 0/0:32,0:32:93.29:0,93,1154 0/0:15,0:15:42.13:0,42,529 0/0:96,0:96:99:0,250,3305 0/0:83,0:83:99:0,232,3138 0/0:61,0:61:99:0,172,2286 0/0:46,0:46:99:0,117,1544 0/0:58,0:58:99:0,160,2117 0/0:28,0:28:75.24:0,75,953 0/0:20,0:20:60.18:0,60,738 0/0:19,0:19:54.17:0,54,685 0/0:28,0:28:78.23:0,78,954 0/0:20,0:20:54.17:0,54,681 0/0:23,0:23:66.21:0,66,836 0/0:92,0:93:99:0,262,3250 0/1:10,13:23:99:404,0,250 0/0:31,0:31:90.28:0,90,1118 0/0:16,0:16:45.13:0,45,551 0/0:50,0:50:99:0,147,1794 0/0:55,0:55:99:0,156,1918 0/0:56,0:56:99:0,150,1886 0/0:19,0:19:57.18:0,57,704 0/0:95,0:95:99:0,250,3398 0/0:46,0:46:99:0,129,1731 0/0:39,0:40:99:0,114,1504 0/0:54,0:54:99:0,144,1927 0/0:26,0:26:69.22:0,69,882 0/0:27,0:27:78.22:0,78,944 0/0:18,0:18:51.16:0,51,645 0/0:28,0:28:75.23:0,75,940 0/0:24,0:24:72.23:0,72,901 0/0:51,0:51:99:0,144,1779 0/0:32,0:32:90.28:0,90,1127 0/0:34,0:34:96.29:0,96,1186 0/0:24,0:24:69.21:0,69,854 0/0:21,0:21:60.17:0,60,725 0/0:42,0:42:99:0,117,1399 0/0:34,0:34:99:0,99,1195 0/0:23,0:23:69.20:0,69,823 0/0:34,0:34:99:0,102,1261 0/0:17,0:17:51.15:0,51,620 0/0:17,0:17:45.14:0,45,568 19 11537603 . G A 661.08 . AC=3;AF=0.036;AN=84;BaseQRankSum=-4.874;DP=1479;Dels=0.00;FS=7.488;HRun=0;HaplotypeScore=0.9316;InbreedingCoeff=-0.0371;MQ=58.25;MQ0=0;MQRankSum=1.659;QD=11.40;ReadPosRankSum=-0.881 GT:AD:DP:GQ:PL 0/1:11,4:15:96.97:97,0,314 0/1:11,12:23:99:339,0,269 0/0:13,0:13:36.11:0,36,447 0/0:101,0:101:99:0,295,3833 0/0:92,1:93:99:0,248,3441 0/0:52,0:52:99:0,150,1999 0/0:35,0:35:99:0,105,1342 0/0:56,0:56:99:0,163,2110 0/0:23,0:23:63.20:0,63,785 0/0:19,0:19:54.17:0,54,675 0/0:20,0:20:57.16:0,57,695 0/0:20,0:20:51.14:0,51,621 0/0:16,0:16:48.13:0,48,571 0/0:26,0:26:75.19:0,75,910 0/0:82,0:82:99:0,232,2786 0/0:23,0:23:63.19:0,63,783 0/0:26,0:26:75.23:0,75,922 0/0:9,0:9:27.08:0,27,330 0/0:44,0:44:99:0,120,1421 0/0:83,0:83:99:0,217,2733 0/0:45,0:45:99:0,120,1434 0/0:40,0:40:99:0,117,1451 0/0:92,0:92:99:0,274,3591 0/0:40,0:40:99:0,105,1395 0/0:48,0:48:99:0,141,1795 0/0:46,0:47:99:0,132,1694 0/0:17,0:17:45.13:0,45,560 0/0:17,0:17:45.11:0,45,531 0/0:23,0:23:69.21:0,69,854 0/0:25,0:25:69.19:0,69,815 0/0:21,0:21:63.19:0,63,773 0/0:48,0:49:99:0,129,1602 0/0:34,0:34:93.28:0,93,1166 0/0:10,0:10:27.07:0,27,330 0/0:20,0:20:60.18:0,60,739 0/1:9,11:20:99:301,0,276 0/0:52,0:52:99:0,132,1586 0/0:13,0:13:39.11:0,39,481 0/0:21,0:21:57.18:0,57,714 0/0:24,0:24:69.21:0,69,851 0/0:20,0:20:54.17:0,54,682 0/0:22,0:22:66.19:0,66,792 19 11541539 . G C 3534.27 . AC=2;AF=0.024;AN=84;BaseQRankSum=-14.344;DP=4796;DS;Dels=0.00;FS=15.902;HRun=0;HaplotypeScore=10.4771;InbreedingCoeff=-0.0244;MQ=58.41;MQ0=1;MQRankSum=-1.372;QD=12.85;ReadPosRankSum=0.282 GT:AD:DP:GQ:PL 0/0:83,0:83:99:0,217,2693 0/0:94,0:94:99:0,250,3151 0/0:71,0:71:99:0,184,2317 0/0:241,0:241:99:0,644,8640 0/0:223,0:223:99:0,578,7786 0/0:183,1:184:99:0,460,6212 0/0:149,0:149:99:0,367,4933 0/0:194,0:194:99:0,488,6583 0/0:73,0:73:99:0,202,2531 0/0:104,0:104:99:0,262,3372 0/0:75,0:75:99:0,196,2468 0/0:82,0:82:99:0,220,2761 0/0:57,0:57:99:0,159,1986 0/0:75,0:75:99:0,208,2582 0/0:244,0:245:99:0,629,7979 0/0:86,0:86:99:0,229,2837 0/0:79,0:79:99:0,205,2601 0/0:65,0:65:99:0,169,2159 0/0:130,0:131:99:0,340,4192 0/0:157,0:157:99:0,388,5000 0/1:73,64:139:99:1658,0,2091 0/0:93,0:93:99:0,244,3129 0/0:246,0:246:99:0,641,8581 0/0:143,0:143:99:0,349,4740 0/0:182,0:182:99:0,448,6111 0/0:151,0:151:99:0,385,5201 0/0:67,0:67:99:0,184,2307 0/0:74,0:74:99:0,205,2588 0/0:85,0:85:99:0,226,2859 0/0:74,0:74:99:0,187,2388 0/0:83,0:83:99:0,217,2737 0/1:63,73:136:99:1876,0,1606 0/0:106,0:106:99:0,292,3641 0/0:79,0:79:99:0,211,2659 0/0:74,0:74:99:0,211,2626 0/0:92,0:92:99:0,247,3089 0/0:126,0:126:99:0,343,4252 0/0:72,0:72:99:0,193,2411 0/0:84,0:84:99:0,226,2814 0/0:55,0:55:99:0,153,1906 0/0:76,0:76:99:0,205,2583 0/0:91,0:91:99:0,244,3047 19 11541546 . C CT 661.80 . AC=13;AF=0.155;AN=84;BaseQRankSum=5.302;DP=4653;DS;FS=1530.532;HRun=2;HaplotypeScore=337.2471;InbreedingCoeff=-0.1917;MQ=58.31;MQ0=1;MQRankSum=1.872;QD=0.55;ReadPosRankSum=-19.893 GT:AD:DP:GQ:PL 0/0:84,0:84:27.91:0,28,1505 0/0:90,1:91:99:0,130,1622 0/0:67,0:67:85.86:0,86,1455 0/0:223,0:223:99:0,202,5074 0/0:221,0:221:99:0,309,5068 0/0:177,0:169:99:0,224,3664 0/0:135,1:135:99:0,162,2936 0/0:184,0:181:99:0,146,3868 0/0:68,1:69:99:0,123,1550 0/1:97,0:97:26.37:26,0,1628 0/0:71,1:72:1.98:2,0,1355 0/0:83,0:83:99:0,120,1672 0/1:58,2:59:19.32:19,0,864 0/0:73,0:73:27.69:0,28,1377 0/1:236,2:237:10.25:10,0,3658 0/0:81,0:81:62.59:0,63,1616 0/1:79,0:79:99:119,0,1214 0/1:60,0:60:65.76:66,0,1086 0/0:122,0:122:99:0,102,2281 0/0:158,1:159:67.80:0,68,2794 0/0:124,0:124:95.33:0,95,2449 0/1:95,1:96:68.52:69,0,1548 0/0:232,0:231:99:0,362,5501 0/0:137,0:132:99:0,234,3209 0/0:180,0:172:99:0,160,3931 0/0:144,2:142:99:0,120,3040 0/0:77,0:77:41.18:0,41,1331 0/1:78,0:78:85.70:86,0,1432 0/1:77,0:77:99:156,0,1176 0/0:71,0:71:15.20:0,15,1160 0/1:79,0:79:43.05:43,0,1475 0/0:147,0:147:99:0,294,3679 0/0:105,0:105:99:0,137,2236 0/0:75,0:75:49.71:0,50,1539 0/1:71,0:71:13.05:13,0,1324 0/1:85,0:85:99:103,0,1440 0/1:133,0:133:87.99:88,0,2025 0/0:72,0:72:27.48:0,27,1384 0/0:79,0:79:70.78:0,71,1191 0/1:50,0:50:18.56:19,0,862 0/0:79,0:79:26.23:0,26,1790 0/0:84,0:84:97.17:0,97,1817 19 11541548 . TCTCCCAC T 11427.42 . AC=41;AF=0.488;AN=84;BaseQRankSum=-6.291;DP=4403;DS;FS=3200.000;HRun=0;HaplotypeScore=646.7506;InbreedingCoeff=-0.9506;MQ=58.85;MQ0=1;MQRankSum=4.238;QD=2.69;ReadPosRankSum=-34.985 GT:AD:DP:GQ:PL 0/1:78,0:78:99:162,0,5886 0/1:86,0:86:99:309,0,4869 0/1:61,0:61:99:162,0,4806 0/1:153,63:216:99:582,0,16816 0/1:209,0:209:99:483,0,16804 0/1:169,0:161:99:355,0,12329 0/1:129,0:128:99:128,0,9778 0/1:176,0:173:99:310,0,12178 0/1:65,0:65:74.82:75,0,5059 0/1:89,0:88:99:362,0,5944 0/1:65,0:65:99:108,0,5012 0/1:77,0:77:99:189,0,5694 0/1:58,0:57:99:408,0,2893 0/1:69,0:69:99:236,0,4970 0/1:133,82:214:99:737,0,13354 0/1:76,0:76:99:171,0,5342 0/1:77,0:77:99:442,0,4250 0/1:56,0:56:99:232,0,4051 0/1:109,0:109:99:309,0,8786 0/1:148,0:148:99:402,0,8853 0/1:117,0:117:99:192,0,8117 0/1:56,38:94:99:468,0,5631 0/1:160,54:213:99:266,0,18123 0/1:131,0:127:11.64:12,0,10853 0/1:171,0:162:99:258,0,13232 0/1:138,0:134:99:202,0,10592 0/1:70,0:70:99:256,0,5225 0/1:75,0:75:99:291,0,5188 0/1:76,0:76:99:479,0,4230 0/1:68,0:68:99:208,0,4944 0/1:73,0:73:99:269,0,5053 0/0:148,0:148:54.42:0,54,11163 0/1:102,0:102:99:429,0,6526 0/1:71,0:71:57.04:57,0,6181 0/1:67,0:67:99:195,0,4924 0/1:82,0:82:99:278,0,5479 0/1:125,0:125:99:427,0,7850 0/1:73,0:73:99:247,0,5272 0/1:73,0:73:99:257,0,4073 0/1:47,0:47:99:167,0,2788 0/1:80,0:80:99:136,0,6008 0/1:80,0:80:99:174,0,5965 19 11556233 . G A 330.91 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.919;DP=1877;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.1085;InbreedingCoeff=-0.0120;MQ=59.11;MQ0=0;MQRankSum=0.016;QD=13.24;ReadPosRankSum=0.357 GT:AD:DP:GQ:PL 0/0:30,0:30:78.25:0,78,996 0/0:35,0:35:90.27:0,90,1145 0/1:11,14:25:99:377,0,305 0/0:132,0:132:99:0,340,4522 0/0:92,0:92:99:0,256,3389 0/0:79,0:79:99:0,214,2859 0/0:64,0:64:99:0,166,2221 0/0:86,0:86:99:0,232,3021 0/0:28,0:29:75.23:0,75,942 0/0:30,0:30:81.24:0,81,1006 0/0:20,0:20:54.17:0,54,677 0/0:25,0:25:72.22:0,72,893 0/0:25,0:25:69.21:0,69,859 0/0:33,0:33:90.25:0,90,1118 0/0:77,0:77:99:0,211,2650 0/0:38,0:38:99:0,102,1292 0/0:27,0:27:72.23:0,72,923 0/0:17,0:17:48.15:0,48,598 0/0:41,0:41:99:0,108,1337 0/0:59,0:59:99:0,147,1889 0/0:41,0:41:99:0,108,1339 0/0:35,0:35:96.30:0,96,1195 0/0:146,1:147:99:0,365,5228 0/0:48,0:49:99:0,126,1689 0/0:80,0:80:99:0,205,2745 0/0:49,0:49:99:0,135,1801 0/0:20,0:20:60.19:0,60,754 0/0:39,0:39:99:0,111,1379 0/0:25,0:25:72.23:0,72,917 0/0:31,0:31:81.26:0,81,1048 0/0:35,0:35:96.31:0,96,1223 0/0:70,0:71:99:0,175,2273 0/0:41,0:41:99:0,114,1422 0/0:24,0:24:66.19:0,66,820 0/0:19,0:19:57.17:0,57,699 0/0:28,0:28:72.22:0,72,915 0/0:54,0:54:99:0,129,1592 0/0:27,0:27:72.23:0,72,914 0/0:23,0:23:66.19:0,66,809 0/0:31,0:31:81.26:0,81,1053 0/0:16,0:16:45.14:0,45,562 0/0:28,0:28:78.24:0,78,974 19 11618298 . T C 282.77 . AC=9;AF=0.107;AN=84;BaseQRankSum=-12.402;DP=3602;Dels=0.00;FS=2997.203;HRun=3;HaplotypeScore=1.9665;InbreedingCoeff=-0.1279;MQ=58.89;MQ0=0;MQRankSum=0.479;QD=0.47;ReadPosRankSum=-24.401 GT:AD:DP:GQ:PL 0/0:44,21:65:40.12:0,40,1362 0/1:47,24:71:73.31:73,0,1366 0/0:39,13:52:76.18:0,76,1152 0/0:121,42:163:99:0,312,3894 0/0:101,51:152:19.35:0,19,3077 0/0:91,39:130:99:0,186,2932 0/0:84,29:113:99:0,212,2848 0/0:74,33:107:99:0,191,2531 0/1:47,22:69:70.49:70,0,1372 0/1:38,22:60:44.48:44,0,1037 0/0:41,15:56:37.74:0,38,1307 0/0:38,9:47:36.56:0,37,1214 0/0:51,30:81:78.97:0,79,1470 0/0:58,17:75:99:0,138,1896 0/0:154,59:213:99:0,282,4605 0/0:34,21:56:19.76:0,20,1079 0/0:43,19:62:56.43:0,56,1270 0/0:48,11:59:96.18:0,96,1615 0/0:93,30:124:99:0,153,2860 0/0:84,43:127:96.28:0,96,2468 0/1:72,28:100:36.39:36,0,2113 0/1:56,21:77:32.73:33,0,1573 0/0:112,45:157:99:0,199,3539 0/0:71,35:107:99:0,100,2246 0/0:82,39:121:99:0,206,2741 0/0:71,24:95:87.20:0,87,2217 0/1:24,10:34:46.78:47,0,720 0/0:51,18:69:87.76:0,88,1675 0/0:37,20:57:99:0,108,1222 0/0:34,14:48:2.51:1,0,963 0/1:37,22:59:20.88:21,0,1112 0/0:91,36:127:99:0,226,2934 0/0:49,22:71:49.41:0,49,1469 0/1:45,18:63:74.63:75,0,1397 0/0:43,25:68:8.48:0,8,1309 0/0:61,19:80:99:0,109,1891 0/0:84,23:108:99:0,112,2548 0/0:44,14:58:38.67:0,39,1322 0/0:32,13:45:23.36:0,23,916 0/0:45,14:59:34.35:0,34,1280 0/0:39,14:53:47.67:0,48,1132 0/1:44,20:64:6.72:7,0,1310 19 11660200 . C T 672.55 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.693;DP=1845;Dels=0.00;FS=0.737;HRun=1;HaplotypeScore=1.8565;InbreedingCoeff=-0.0120;MQ=58.70;MQ0=0;MQRankSum=1.888;QD=10.85;ReadPosRankSum=-0.860 GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,99,1254 0/0:30,0:30:87.26:0,87,1065 0/0:27,0:27:75.22:0,75,926 0/0:84,0:84:99:0,244,3172 0/0:90,0:90:99:0,259,3416 0/0:66,0:66:99:0,181,2371 0/0:55,0:55:99:0,150,2007 0/0:47,0:47:99:0,129,1733 0/0:27,0:27:81.22:0,81,985 0/0:29,0:29:84.27:0,84,1058 0/0:36,0:36:96.30:0,96,1199 0/0:25,0:25:69.22:0,69,878 0/0:33,0:33:96.29:0,96,1180 0/0:34,0:34:96.29:0,96,1179 0/0:124,0:124:99:0,349,4385 0/0:34,0:34:96.30:0,96,1211 0/0:27,0:27:81.25:0,81,992 0/0:30,0:30:78.25:0,78,977 0/0:48,0:48:99:0,126,1528 0/0:67,0:67:99:0,187,2328 0/0:43,0:43:99:0,114,1428 0/0:37,1:38:99:0,108,1300 0/0:102,0:102:99:0,286,3794 0/0:54,0:54:99:0,150,1956 0/0:68,0:68:99:0,184,2440 0/1:36,26:62:99:719,0,1159 0/0:25,0:25:75.23:0,75,907 0/0:32,0:32:93.30:0,93,1184 0/0:25,0:25:75.23:0,75,917 0/0:26,0:26:78.24:0,78,962 0/0:32,0:32:90.28:0,90,1142 0/0:55,0:55:99:0,153,1923 0/0:30,0:30:87.25:0,87,1064 0/0:32,0:32:87.25:0,87,1065 0/0:36,0:36:99:0,102,1300 0/0:31,0:31:87.25:0,87,1099 0/0:57,0:57:99:0,163,2011 0/0:36,0:36:99:0,105,1298 0/0:34,0:34:99:0,99,1240 0/0:33,0:33:96.28:0,96,1186 0/0:22,0:22:66.20:0,66,809 0/0:25,0:25:69.22:0,69,876 19 11660223 . A C 27.63 . AC=4;AF=0.048;AN=84;BaseQRankSum=-14.831;DP=1753;Dels=0.00;FS=231.801;HRun=2;HaplotypeScore=1.2949;InbreedingCoeff=-0.0890;MQ=58.40;MQ0=0;MQRankSum=3.077;QD=0.23;ReadPosRankSum=-4.539 GT:AD:DP:GQ:PL 0/0:22,9:31:28.82:0,29,668 0/0:18,17:35:49.75:0,50,527 0/0:20,7:27:26.58:0,27,611 0/0:32,53:85:0.57:9,0,855 0/0:44,48:92:81.12:0,81,1295 0/0:29,31:60:38.79:0,39,826 0/0:37,28:65:54.88:0,55,1039 0/0:27,19:47:42.60:0,43,856 0/0:14,6:20:7.33:0,7,444 0/0:15,11:27:42.10:0,42,469 0/0:16,15:31:14.69:0,15,474 0/0:13,14:27:8.68:0,9,420 0/0:14,4:18:39.09:0,39,427 0/0:22,13:35:60.14:0,60,664 0/0:59,45:104:99:0,108,1827 0/0:24,12:36:10.06:0,10,707 0/0:14,12:26:40.88:0,41,408 0/0:17,7:24:39.11:0,39,454 0/0:18,12:30:30.47:0,30,571 0/0:40,20:61:86.57:0,87,1206 0/0:24,16:40:5.91:0,6,733 0/0:17,13:31:1.20:5,0,505 0/0:56,57:113:99:0,135,1552 0/0:34,28:62:18.11:0,18,906 0/0:40,27:68:32.28:0,32,1052 0/0:24,23:48:7.30:0,7,669 0/0:19,9:28:26.71:0,27,602 0/0:19,12:31:7.06:0,7,619 0/1:11,12:23:25.98:26,0,314 0/0:14,10:24:15.44:0,15,433 0/0:20,12:32:54.12:0,54,616 0/0:34,20:54:87.23:0,87,992 0/0:19,13:32:54.15:0,54,630 0/0:16,7:23:45.10:0,45,501 0/0:17,12:29:42.12:0,42,495 0/1:17,17:34:31.68:32,0,489 0/0:30,20:50:50.14:0,50,844 0/1:13,18:31:17.79:18,0,328 0/0:17,15:32:19.08:0,19,504 0/1:17,14:31:33.68:34,0,393 0/0:16,11:27:7.85:0,8,343 0/0:13,15:28:8.52:0,9,398 19 11660538 . G T 1121.70 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.917;DP=2607;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.2999;InbreedingCoeff=-0.0244;MQ=59.24;MQ0=0;MQRankSum=-0.009;QD=11.56;ReadPosRankSum=-0.952 GT:AD:DP:GQ:PL 0/0:42,0:43:99:0,114,1438 0/0:49,0:49:99:0,138,1723 0/0:39,0:39:99:0,108,1361 0/0:105,0:105:99:0,301,4038 0/0:99,0:99:99:0,280,3802 0/0:64,1:65:99:0,184,2448 0/0:60,0:60:99:0,181,2393 0/0:77,0:77:99:0,217,2926 0/0:42,0:42:99:0,123,1569 0/0:34,0:34:99:0,102,1265 0/0:36,0:36:99:0,105,1331 0/0:47,0:47:99:0,132,1671 0/0:40,1:41:99:0,111,1372 0/0:48,0:48:99:0,138,1709 0/0:193,0:193:99:0,487,6240 0/0:48,0:48:99:0,141,1744 0/0:40,0:40:99:0,108,1329 0/0:44,0:44:99:0,123,1546 0/0:68,0:68:99:0,187,2335 0/0:101,0:101:99:0,274,3423 0/0:93,0:93:99:0,250,3170 0/0:70,1:71:99:0,162,2379 0/0:110,0:110:99:0,310,4230 0/0:46,0:46:99:0,135,1822 0/0:73,0:73:99:0,211,2841 0/0:69,0:69:99:0,199,2681 0/1:22,15:37:99:431,0,605 0/1:32,28:60:99:753,0,879 0/0:54,0:54:99:0,147,1882 0/0:56,0:56:99:0,156,1975 0/0:26,0:26:75.24:0,75,948 0/0:86,1:87:99:0,223,2843 0/0:57,0:57:99:0,150,1896 0/0:41,0:41:99:0,108,1382 0/0:47,0:47:99:0,138,1741 0/0:49,0:49:99:0,135,1712 0/0:101,0:102:99:0,283,3563 0/0:51,0:51:99:0,138,1742 0/0:54,1:55:99:0,150,1835 0/0:48,0:48:99:0,135,1719 0/0:56,0:56:99:0,153,1939 0/0:40,0:40:99:0,120,1489 19 11687644 . G A 1539 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.080;DP=3547;DS;Dels=0.00;FS=15.520;HRun=0;HaplotypeScore=1.9422;InbreedingCoeff=-0.0244;MQ=59.39;MQ0=0;MQRankSum=0.879;QD=12.51;ReadPosRankSum=-1.496 GT:AD:DP:GQ:PL 0/0:71,0:71:99:0,196,2341 0/0:88,0:88:99:0,235,2817 0/0:64,0:64:99:0,169,2080 0/0:137,0:137:99:0,379,4930 0/0:107,0:107:99:0,295,3831 0/0:97,0:97:99:0,274,3511 0/0:79,0:80:99:0,223,2927 0/0:86,0:86:99:0,232,2968 0/0:77,0:77:99:0,223,2671 0/0:72,0:72:99:0,199,2351 0/0:73,0:73:99:0,196,2382 0/0:61,0:61:99:0,171,2016 0/0:67,0:67:99:0,187,2188 0/0:70,0:70:99:0,199,2341 0/0:212,0:213:99:0,575,6867 0/0:62,0:62:99:0,177,2051 0/0:72,0:72:99:0,187,2212 0/0:68,0:68:99:0,193,2246 0/0:113,0:114:99:0,301,3518 0/0:117,0:119:99:0,316,3803 0/0:118,0:118:99:0,310,3673 0/0:75,0:75:99:0,214,2579 0/0:146,0:146:99:0,409,5352 0/0:70,0:70:99:0,196,2520 0/0:80,0:80:99:0,229,2922 0/0:71,0:71:99:0,184,2393 0/1:29,29:58:99:808,0,788 0/1:37,28:65:99:794,0,1009 0/0:68,0:68:99:0,190,2252 0/0:73,0:74:99:0,208,2440 0/0:64,0:64:99:0,180,2126 0/0:102,0:103:99:0,271,3300 0/0:59,0:59:99:0,159,1897 0/0:73,0:73:99:0,205,2426 0/0:69,1:70:99:0,202,2307 0/0:74,0:74:99:0,220,2580 0/0:105,0:106:99:0,298,3478 0/0:79,0:79:99:0,217,2570 0/0:76,0:76:99:0,211,2460 0/0:73,0:73:99:0,205,2411 0/0:69,0:69:99:0,190,2266 0/0:78,0:78:99:0,220,2645 19 11941221 . T A 38651.72 . AC=36;AF=0.429;AN=84;BaseQRankSum=-32.443;DP=6260;DS;Dels=0.00;FS=5.503;HRun=0;HaplotypeScore=1.6440;InbreedingCoeff=0.1250;MQ=42.89;MQ0=457;MQRankSum=-49.547;QD=9.94;ReadPosRankSum=0.791 GT:AD:DP:GQ:PL 0/1:92,60:153:99:715,0,2631 0/1:68,52:120:99:773,0,1836 0/0:127,0:127:99:0,349,4176 0/1:93,76:169:99:1190,0,2697 0/1:88,78:166:99:1196,0,2708 1/1:0,133:133:99:2897,271,0 1/1:0,121:121:99:2392,226,0 0/1:77,61:138:99:866,0,2195 0/0:160,0:160:99:0,445,5256 0/0:140,0:140:99:0,388,4658 0/1:59,57:116:99:817,0,1643 0/1:136,48:184:99:371,0,4048 1/1:0,77:77:99:1691,162,0 0/0:171,1:172:99:0,460,5808 0/1:153,97:250:99:1644,0,4317 0/1:66,50:116:99:752,0,1822 1/1:0,124:124:99:2307,219,0 0/0:144,0:144:99:0,403,4808 0/0:207,0:207:99:0,554,6731 0/0:222,0:222:99:0,602,7421 0/1:109,86:195:99:1160,0,3039 0/1:77,59:136:99:734,0,2216 0/1:118,90:208:99:1462,0,3495 0/1:80,61:141:99:757,0,2394 1/1:1,140:141:99:2781,240,0 0/0:159,1:160:99:0,388,5272 0/0:129,0:129:99:0,358,4276 0/0:145,0:145:99:0,388,4676 0/1:89,44:133:99:651,0,2557 0/1:80,49:129:99:499,0,2259 1/1:0,118:118:99:2165,204,0 1/1:0,174:174:99:3584,340,0 0/0:161,0:161:99:0,442,5321 0/0:144,0:144:99:0,400,4708 0/0:139,0:139:99:0,382,4588 0/0:180,0:180:99:0,481,5786 1/1:0,141:141:99:2451,232,0 0/1:75,56:131:99:891,0,2136 0/1:72,59:131:99:796,0,2141 0/1:78,47:125:99:475,0,2388 0/0:136,5:141:99:0,285,4367 1/1:0,118:118:99:2638,253,0 19 11998756 . C T 954.10 . 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C T 4585.21 . AC=7;AF=0.083;AN=84;BaseQRankSum=8.626;DP=3052;Dels=0.00;FS=1.618;HRun=0;HaplotypeScore=2.2980;InbreedingCoeff=-0.0909;MQ=58.84;MQ0=0;MQRankSum=1.944;QD=10.49;ReadPosRankSum=0.465 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,162,1828 0/0:61,0:61:99:0,153,1808 0/0:51,0:51:99:0,132,1541 0/0:121,0:121:99:0,298,3689 0/1:65,23:89:99:590,0,1887 0/0:68,0:68:99:0,184,2240 0/1:42,25:67:99:638,0,1070 0/0:61,0:61:99:0,144,1830 0/0:57,0:57:99:0,144,1736 0/0:55,0:55:99:0,132,1586 0/0:57,0:57:99:0,156,1839 0/0:33,0:33:96.25:0,96,1080 0/0:47,0:47:99:0,129,1469 0/0:61,0:61:99:0,156,1845 0/0:219,0:219:99:0,526,6346 0/0:62,0:63:99:0,171,1951 0/0:78,0:78:99:0,208,2432 0/0:58,0:58:99:0,159,1852 0/0:109,0:109:99:0,277,3184 0/0:106,0:107:99:0,274,3193 0/0:130,1:132:99:0,319,3723 0/0:75,0:75:99:0,180,2061 0/0:109,0:109:99:0,274,3377 0/1:37,27:64:99:687,0,943 0/0:62,0:62:99:0,156,1981 0/1:30,26:56:99:634,0,791 0/0:35,0:35:99:0,99,1154 0/0:61,1:62:99:0,132,1844 0/0:52,0:52:99:0,141,1667 0/0:59,0:59:99:0,162,1876 0/0:56,0:56:99:0,144,1697 0/0:130,0:130:99:0,322,3813 0/0:80,0:80:99:0,214,2496 0/1:31,29:60:99:712,0,751 0/1:26,20:46:99:503,0,705 0/0:47,0:47:99:0,120,1454 0/0:114,0:116:99:0,262,3075 0/0:63,0:63:99:0,165,1908 0/0:53,0:53:99:0,141,1597 0/0:74,0:74:99:0,190,2260 0/0:46,0:46:99:0,129,1470 0/1:26,29:55:99:822,0,690 19 12543251 . A C 1019.55 . AC=12;AF=0.143;AN=84;BaseQRankSum=9.664;DP=2183;Dels=0.00;FS=79.927;HRun=1;HaplotypeScore=0.4763;InbreedingCoeff=0.3595;MQ=45.57;MQ0=151;MQRankSum=-9.262;QD=3.36;ReadPosRankSum=-0.563 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,138,1589 0/0:57,0:57:99:0,165,1813 0/0:24,5:30:8.33:0,8,720 0/0:37,12:49:41.43:0,41,1133 0/0:31,11:42:1.44:4,0,929 0/0:28,7:35:28.17:0,28,946 1/1:0,34:34:12.03:128,12,0 0/0:62,0:62:99:0,174,2081 0/0:58,0:58:99:0,141,1648 0/1:23,6:29:99:116,0,641 0/1:27,8:35:19.10:19,0,745 0/0:47,0:47:99:0,123,1412 0/0:76,0:76:99:0,193,2264 0/0:62,0:62:99:0,162,1858 0/0:115,20:135:99:0,240,3213 0/0:14,4:18:11.66:0,12,415 0/0:66,0:66:99:0,180,2072 0/0:53,0:53:99:0,147,1691 0/0:71,0:71:99:0,183,2148 0/0:105,1:106:99:0,259,3087 0/1:50,20:70:99:119,0,1297 0/1:29,11:40:99:220,0,774 0/0:63,0:63:99:0,174,2078 0/0:55,1:56:99:0,150,1780 0/0:76,0:77:99:0,205,2482 0/0:81,1:82:99:0,214,2545 0/0:28,0:28:81.21:0,81,928 0/0:66,0:66:99:0,168,1917 0/0:27,5:32:44.73:0,45,775 0/0:50,0:50:99:0,135,1545 0/0:39,0:39:99:0,108,1236 1/1:0,21:21:18.05:198,18,0 0/0:50,0:50:99:0,132,1533 0/0:58,0:58:99:0,165,1886 0/0:51,0:51:99:0,141,1631 0/0:76,0:76:99:0,195,2255 0/1:29,11:40:16.08:16,0,783 0/1:1,14:15:27.10:58,0,27 0/0:50,0:50:99:0,138,1545 0/0:30,11:41:56.78:0,57,935 0/0:44,0:44:99:0,123,1384 1/1:0,19:19:27.07:301,27,0 19 12639482 . A C 32.08 . AC=1;AF=0.012;AN=84;BaseQRankSum=-31.544;DP=5405;DS;Dels=0.00;FS=324.255;HRun=1;HaplotypeScore=2.5682;InbreedingCoeff=-0.0120;MQ=59.21;MQ0=0;MQRankSum=-0.081;QD=0.23;ReadPosRankSum=-13.737 GT:AD:DP:GQ:PL 0/0:95,27:122:99:0,223,2798 0/0:99,17:116:99:0,243,3072 0/0:88,29:117:99:0,151,2756 0/0:110,44:154:99:0,255,3354 0/0:91,32:123:99:0,222,2877 0/0:111,28:139:99:0,247,3243 0/0:96,22:118:99:0,256,2950 0/0:111,19:130:99:0,295,3431 0/0:101,39:140:99:0,222,3084 0/0:85,22:107:99:0,220,2565 0/0:100,22:122:99:0,271,3172 0/0:95,17:112:99:0,231,3011 0/0:98,23:121:99:0,253,2949 0/0:73,17:90:99:0,193,2308 0/0:176,74:250:99:0,280,4822 0/0:88,26:114:99:0,232,2657 0/0:81,26:109:99:0,188,2417 0/0:90,25:116:99:0,206,2826 0/0:106,39:145:72.71:0,73,3118 0/0:169,29:199:99:0,412,5161 0/1:96,43:139:78.29:78,0,2551 0/0:76,19:95:99:0,205,2350 0/0:123,55:178:99:0,328,3842 0/0:104,21:125:99:0,244,3175 0/0:92,21:113:99:0,258,2999 0/0:87,23:111:99:0,210,2415 0/0:74,25:99:99:0,171,2289 0/0:112,22:134:99:0,289,3627 0/0:78,21:99:99:0,178,2334 0/0:96,16:112:99:0,232,2905 0/0:111,21:132:99:0,215,3377 0/0:160,25:186:99:0,360,4469 0/0:78,18:96:99:0,211,2428 0/0:117,24:141:99:0,300,3805 0/0:83,39:122:99:0,200,2581 0/0:110,37:147:99:0,276,3448 0/0:88,28:116:61.14:0,61,2592 0/0:88,31:119:99:0,166,2838 0/0:96,24:120:99:0,216,2950 0/0:103,28:131:99:0,286,3270 0/0:92,19:111:99:0,132,2675 0/0:110,25:135:99:0,232,3211 19 12760200 . G A 253.67 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.798;DP=1028;Dels=0.00;FS=11.970;HRun=0;HaplotypeScore=0.9206;InbreedingCoeff=-0.0121;MQ=56.75;MQ0=0;MQRankSum=0.097;QD=11.53;ReadPosRankSum=-0.564 GT:AD:DP:GQ:PL 0/0:26,0:26:69.17:0,69,806 0/0:14,0:14:36.11:0,36,442 0/0:18,0:18:48.14:0,48,586 0/0:47,0:47:99:0,123,1570 0/0:39,0:39:96.29:0,96,1218 0/0:17,0:17:48.14:0,48,584 0/0:26,0:26:69.15:0,69,805 0/0:28,0:28:69.21:0,69,883 0/0:19,0:19:57.15:0,57,671 0/0:16,0:16:45.12:0,45,528 0/0:20,0:20:57.14:0,57,649 0/0:21,0:21:54.16:0,54,656 0/0:21,0:21:51.16:0,51,653 0/0:18,0:18:48.14:0,48,583 0/0:84,0:84:99:0,205,2490 0/0:24,0:24:60.18:0,60,726 0/1:11,11:22:99:300,0,339 0/0:20,0:20:54.15:0,54,634 0/0:32,1:33:51.97:0,52,970 0/0:31,0:31:81.24:0,81,994 0/0:36,0:36:78.23:0,78,978 0/0:16,0:16:33.09:0,33,412 0/0:28,0:28:81.21:0,81,975 0/0:23,0:23:51.17:0,51,688 0/0:26,0:26:69.19:0,69,822 0/0:16,0:16:45.12:0,45,532 0/0:11,0:11:33.10:0,33,403 0/0:23,0:23:57.14:0,57,680 0/0:17,0:17:48.12:0,48,558 0/0:21,0:21:54.15:0,54,637 0/0:26,0:26:69.20:0,69,836 0/0:37,0:37:84.24:0,84,1038 0/0:22,0:22:60.18:0,60,737 0/0:22,0:22:60.17:0,60,727 0/0:25,0:25:66.18:0,66,779 0/0:18,0:18:51.14:0,51,605 0/0:21,0:21:63.14:0,63,708 0/0:23,0:23:60.17:0,60,735 0/0:15,0:15:45.13:0,45,545 0/0:26,0:26:78.24:0,78,958 0/0:18,0:18:51.12:0,51,592 0/0:14,0:14:39.11:0,39,476 19 12766507 . C G 2806.80 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.448;DP=6340;DS;Dels=0.00;FS=0.781;HRun=0;HaplotypeScore=3.5231;InbreedingCoeff=-0.0244;MQ=59.40;MQ0=0;MQRankSum=2.155;QD=13.96;ReadPosRankSum=-0.981 GT:AD:DP:GQ:PL 0/0:116,0:116:99:0,295,3681 0/0:106,0:106:99:0,274,3450 0/0:92,0:92:99:0,259,3160 0/0:250,0:250:99:0,701,9163 0/0:249,1:250:99:0,677,8893 0/0:198,0:198:99:0,503,6603 0/0:181,0:181:99:0,463,6137 0/0:204,0:204:99:0,530,6963 0/0:127,0:127:99:0,316,4001 0/0:114,0:114:99:0,295,3766 0/0:100,0:100:99:0,268,3373 0/0:103,0:103:99:0,265,3326 0/0:107,0:107:99:0,280,3537 0/0:109,0:109:99:0,310,3875 0/0:250,0:250:99:0,650,8046 0/0:103,0:103:99:0,265,3257 0/0:122,0:123:99:0,337,4179 0/0:106,0:107:99:0,295,3581 0/0:238,0:239:99:0,620,7600 0/0:250,0:250:99:0,656,8239 0/0:221,1:222:99:0,566,6946 0/0:134,0:134:99:0,352,4422 0/0:250,0:250:99:0,656,8748 0/0:225,0:225:99:0,569,7619 0/0:235,0:235:99:0,617,8231 0/0:166,0:166:99:0,436,5727 0/0:91,0:91:99:0,238,2994 0/0:106,0:106:99:0,289,3591 0/0:110,0:110:99:0,289,3612 0/0:115,0:116:99:0,310,3882 0/0:99,0:99:99:0,271,3377 0/0:250,0:250:99:0,605,7767 0/0:148,0:148:99:0,373,4725 0/1:43,49:92:99:1473,0,1186 0/0:98,0:98:99:0,265,3315 0/1:63,46:109:99:1397,0,1808 0/0:227,0:228:99:0,581,7029 0/0:112,1:113:99:0,288,3796 0/0:89,0:90:99:0,247,3049 0/0:134,0:134:99:0,364,4499 0/0:91,0:91:99:0,250,3056 0/0:104,0:104:99:0,274,3391 19 12767769 . C A 274.91 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.397;DP=856;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.6518;InbreedingCoeff=-0.0319;MQ=58.60;MQ0=0;MQRankSum=1.942;QD=11.95;ReadPosRankSum=0.408 GT:AD:DP:GQ:PL 0/0:19,0:19:51.14:0,51,618 0/1:6,4:10:99:105,0,182 0/1:5,8:13:99:232,0,106 0/0:49,0:49:99:0,132,1690 0/0:38,0:38:99:0,108,1396 0/0:29,0:29:72.22:0,72,940 0/0:24,0:25:60.20:0,60,807 0/0:27,0:27:66.19:0,66,825 0/0:16,0:16:45.13:0,45,553 0/0:10,0:10:30.09:0,30,371 0/0:12,0:12:36.09:0,36,424 0/0:10,0:10:27.08:0,27,339 0/0:9,0:9:24.07:0,24,290 0/0:11,0:11:30.09:0,30,376 0/0:48,1:49:99:0,123,1493 0/0:11,0:11:27.07:0,27,333 0/0:15,0:15:45.13:0,45,536 0/0:10,0:10:27.07:0,27,300 0/0:36,0:36:90.26:0,90,1086 0/0:25,0:25:63.19:0,63,775 0/0:39,0:39:99:0,108,1325 0/0:34,0:34:90.27:0,90,1112 0/0:42,0:42:99:0,114,1468 0/0:23,0:23:57.18:0,57,757 0/0:31,0:31:87.28:0,87,1140 0/0:23,0:23:60.16:0,60,756 0/0:7,0:7:15.05:0,15,197 0/0:15,0:15:42.11:0,42,493 0/0:12,0:12:33.10:0,33,399 0/0:13,0:13:36.11:0,36,454 0/0:12,0:12:30.09:0,30,372 0/0:24,0:24:66.18:0,66,787 0/0:18,0:18:51.13:0,51,595 0/0:12,0:12:33.10:0,33,401 0/0:13,1:14:2.59:1,0,368 0/0:19,0:19:57.15:0,57,665 0/0:25,0:25:66.20:0,66,803 0/0:16,0:16:45.14:0,45,551 0/0:15,0:15:42.12:0,42,494 0/0:13,0:13:39.10:0,39,449 0/0:8,0:8:24.06:0,24,275 0/0:17,0:17:45.13:0,45,543 19 12767849 . C A 616.75 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.791;DP=933;Dels=0.00;FS=0.832;HRun=0;HaplotypeScore=0.4725;InbreedingCoeff=-0.0258;MQ=58.99;MQ0=0;MQRankSum=-0.404;QD=8.94;ReadPosRankSum=-0.529 GT:AD:DP:GQ:PL 0/0:15,0:15:42.12:0,42,520 0/0:18,0:18:42.13:0,42,547 0/0:8,0:8:21.07:0,21,268 0/0:46,0:46:99:0,117,1556 0/1:20,18:38:99:418,0,648 0/0:25,0:25:63.20:0,63,831 0/0:25,0:25:66.22:0,66,904 0/1:20,11:31:99:261,0,627 0/0:19,0:19:51.16:0,51,657 0/0:18,0:18:42.14:0,42,554 0/0:12,0:12:36.11:0,36,450 0/0:16,1:17:9.89:0,10,495 0/0:9,0:9:24.07:0,24,298 0/0:12,0:12:36.11:0,36,453 0/0:49,0:49:99:0,114,1470 0/0:12,0:12:33.10:0,33,414 0/0:16,0:16:39.13:0,39,504 0/0:15,0:15:36.11:0,36,469 0/0:39,0:39:93.27:0,93,1169 0/0:43,0:43:99:0,111,1390 0/0:47,0:47:99:0,120,1488 0/0:17,0:17:45.14:0,45,578 0/0:33,0:33:90.30:0,90,1231 0/0:26,0:26:72.23:0,72,958 0/0:28,0:28:72.23:0,72,953 0/0:21,0:21:54.18:0,54,724 0/0:9,0:9:24.08:0,24,299 0/0:15,0:15:42.13:0,42,535 0/0:14,0:14:39.12:0,39,503 0/0:14,0:14:42.12:0,42,519 0/0:15,0:15:36.11:0,36,459 0/0:34,0:34:87.26:0,87,1095 0/0:26,0:26:69.20:0,69,863 0/0:11,0:11:27.09:0,27,353 0/0:10,0:10:30.09:0,30,378 0/0:22,0:22:57.18:0,57,722 0/0:44,0:44:99:0,117,1417 0/0:18,0:18:51.16:0,51,647 0/0:14,0:14:42.13:0,42,528 0/0:18,0:18:54.14:0,54,648 0/0:10,0:10:27.08:0,27,341 0/0:20,0:20:57.17:0,57,709 19 12769283 . G C 289.18 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.026;DP=2012;Dels=0.00;FS=6.237;HRun=1;HaplotypeScore=1.5527;InbreedingCoeff=-0.0120;MQ=58.92;MQ0=0;MQRankSum=1.136;QD=11.12;ReadPosRankSum=0.440 GT:AD:DP:GQ:PL 0/0:37,0:37:96.25:0,96,1151 0/0:31,0:31:81.24:0,81,981 0/0:29,0:29:69.20:0,69,855 0/0:82,0:82:99:0,211,2670 0/0:70,0:70:99:0,190,2474 0/0:51,0:51:99:0,129,1642 0/0:37,0:37:99:0,99,1281 0/0:38,0:38:99:0,102,1326 0/0:40,0:40:99:0,105,1251 0/0:49,0:49:99:0,129,1540 0/0:31,0:31:87.25:0,87,1039 0/0:27,0:27:75.20:0,75,877 0/0:33,0:33:84.21:0,84,996 0/0:62,0:64:99:0,171,2069 0/0:115,0:115:99:0,277,3352 0/0:34,0:34:90.26:0,90,1067 0/0:34,0:34:87.24:0,87,1051 0/0:38,0:38:99:0,99,1187 0/0:73,0:75:99:0,195,2226 0/0:84,0:85:99:0,205,2478 0/0:77,0:77:99:0,190,2269 0/0:42,0:42:99:0,99,1262 0/0:74,0:74:99:0,181,2406 0/0:34,0:34:84.24:0,84,1056 0/0:43,0:43:99:0,108,1438 0/0:41,0:41:96.28:0,96,1255 0/0:36,0:36:90.26:0,90,1103 0/0:31,0:31:84.24:0,84,996 0/0:22,0:22:63.18:0,63,754 0/0:28,0:29:69.21:0,69,844 0/0:33,0:33:90.25:0,90,1066 0/0:84,0:84:99:0,202,2504 0/0:37,0:37:99:0,102,1207 0/0:41,0:41:99:0,117,1366 0/0:47,0:47:99:0,129,1533 0/0:56,0:56:99:0,150,1757 0/0:74,0:74:99:0,193,2295 0/0:42,0:42:99:0,111,1353 0/0:44,0:44:99:0,117,1386 0/0:55,0:55:99:0,141,1657 0/1:13,13:26:99:335,0,328 0/0:44,0:44:99:0,111,1319 19 12780179 . G A 50.67 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.973;DP=447;Dels=0.00;FS=1.906;HRun=0;HaplotypeScore=0.4547;InbreedingCoeff=-0.0281;MQ=58.58;MQ0=0;MQRankSum=1.018;QD=4.61;ReadPosRankSum=-0.243 GT:AD:DP:GQ:PL 0/0:7,0:7:21.07:0,21,261 0/0:11,0:11:33.10:0,33,406 0/0:6,0:6:18.06:0,18,223 0/0:9,0:9:27.09:0,27,350 0/0:13,0:13:30.09:0,30,386 0/0:14,0:14:39.11:0,39,474 0/0:8,0:8:21.07:0,21,285 0/0:8,0:8:18.06:0,18,239 0/0:9,0:9:24.07:0,24,306 0/0:4,0:4:12.04:0,12,147 0/0:8,0:8:24.08:0,24,297 0/0:8,0:8:24.07:0,24,281 0/0:8,0:8:24.06:0,24,283 0/0:10,0:10:30.09:0,30,377 0/0:35,0:35:90.27:0,90,1141 0/0:11,0:11:33.10:0,33,406 0/0:9,0:9:21.06:0,21,257 0/0:8,0:8:24.08:0,24,302 0/0:10,0:10:27.08:0,27,335 0/0:28,0:28:66.20:0,66,837 0/0:14,0:15:33.10:0,33,415 0/0:6,0:6:12.04:0,12,159 0/0:10,0:12:27.09:0,27,363 0/1:2,2:4:58.44:58,0,69 0/1:5,2:7:54.55:55,0,158 0/0:9,0:9:24.08:0,24,334 0/0:7,0:7:18.06:0,18,229 0/0:8,0:8:21.07:0,21,267 0/0:9,0:9:27.08:0,27,328 0/0:7,0:7:18.05:0,18,218 0/0:8,0:8:24.08:0,24,299 0/0:22,0:22:60.18:0,60,735 0/0:12,0:12:36.11:0,36,427 0/0:7,0:7:18.05:0,18,211 0/0:10,0:10:30.09:0,30,380 0/0:9,0:9:21.06:0,21,259 0/0:18,0:18:51.14:0,51,610 0/0:9,0:9:24.08:0,24,301 0/0:15,0:15:42.13:0,42,518 0/0:13,0:13:33.10:0,33,416 0/0:6,0:6:18.06:0,18,230 0/0:10,0:10:27.08:0,27,325 19 12780204 . T C 44.89 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.219;DP=502;Dels=0.00;FS=2.089;HRun=0;HaplotypeScore=0.2926;InbreedingCoeff=-0.0152;MQ=58.76;MQ0=0;MQRankSum=0.813;QD=7.48;ReadPosRankSum=-0.343 GT:AD:DP:GQ:PL 0/0:13,0:13:33.10:0,33,409 0/0:17,0:17:45.13:0,45,543 0/0:4,0:4:12.04:0,12,143 0/0:12,0:12:30.09:0,30,378 0/0:10,0:10:30.08:0,30,366 0/0:11,0:11:30.10:0,30,401 0/0:10,0:10:21.07:0,21,287 0/0:8,0:8:18.06:0,18,237 0/0:12,0:12:36.11:0,36,426 0/1:3,3:6:91.07:91,0,91 0/0:7,0:7:18.05:0,18,223 0/0:11,0:11:33.10:0,33,401 0/0:13,0:13:33.10:0,33,413 0/0:10,0:10:27.08:0,27,323 0/0:35,0:35:96.29:0,96,1173 0/0:6,0:6:18.06:0,18,223 0/0:10,0:10:27.09:0,27,343 0/0:10,0:10:27.08:0,27,325 0/0:19,0:19:45.13:0,45,562 0/0:27,0:27:69.22:0,69,871 0/0:15,0:15:30.09:0,30,385 0/0:10,0:10:24.07:0,24,302 0/0:15,0:15:39.12:0,39,489 0/0:6,0:6:15.05:0,15,195 0/0:9,0:9:21.07:0,21,277 0/0:9,0:9:18.06:0,18,246 0/0:8,0:8:21.07:0,21,262 0/0:6,0:6:15.05:0,15,190 0/0:8,0:8:21.07:0,21,261 0/0:13,0:13:33.10:0,33,421 0/0:10,0:10:30.09:0,30,351 0/0:24,0:24:63.20:0,63,797 0/0:15,0:15:39.12:0,39,470 0/0:11,0:11:30.09:0,30,361 0/0:8,0:8:24.07:0,24,282 0/0:8,0:8:24.07:0,24,291 0/0:19,0:19:51.16:0,51,637 0/0:10,0:10:27.08:0,27,338 0/0:11,0:11:33.10:0,33,399 0/0:18,0:18:54.16:0,54,637 0/0:12,0:12:24.08:0,24,314 0/0:6,0:6:18.05:0,18,216 19 12800851 . G A 1244.13 . AC=1;AF=0.012;AN=84;BaseQRankSum=-7.328;DP=2406;Dels=0.00;FS=1.837;HRun=0;HaplotypeScore=2.3723;InbreedingCoeff=-0.0120;MQ=58.99;MQ0=0;MQRankSum=-0.581;QD=17.04;ReadPosRankSum=-0.612 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,117,1438 0/0:46,0:46:99:0,126,1530 0/0:35,0:35:99:0,105,1293 0/0:131,0:131:99:0,364,4726 0/0:119,0:119:99:0,322,4198 0/0:103,0:103:99:0,280,3799 0/0:67,0:67:99:0,181,2336 0/0:77,0:77:99:0,208,2666 0/0:39,0:39:99:0,105,1318 0/0:36,0:36:96.28:0,96,1177 0/0:31,0:31:93.26:0,93,1130 0/0:33,0:33:90.29:0,90,1137 0/0:34,0:35:96.26:0,96,1162 0/0:39,0:39:99:0,114,1419 0/0:134,0:134:99:0,358,4454 0/0:48,0:49:99:0,135,1622 0/0:36,0:36:96.25:0,96,1162 0/0:38,0:38:99:0,108,1331 0/0:56,0:56:99:0,153,1884 0/0:84,0:84:99:0,226,2759 0/0:67,0:67:99:0,174,2156 0/0:52,0:52:99:0,150,1837 0/0:152,0:152:99:0,418,5580 0/0:63,0:63:99:0,175,2327 0/0:82,1:83:99:0,229,3026 0/1:26,47:73:99:1290,0,798 0/0:32,0:32:90.27:0,90,1118 0/0:35,0:35:96.27:0,96,1160 0/0:26,0:26:72.21:0,72,886 0/0:36,0:36:99:0,105,1315 0/0:40,0:41:99:0,108,1318 0/0:91,0:91:99:0,256,3200 0/0:71,0:71:99:0,190,2371 0/0:26,0:26:75.21:0,75,904 0/0:31,0:31:90.23:0,90,1070 0/0:38,0:38:99:0,114,1365 0/0:65,0:65:99:0,178,2205 0/0:34,0:34:90.28:0,90,1128 0/0:42,0:42:99:0,111,1392 0/0:46,0:46:99:0,129,1597 0/0:24,0:24:66.20:0,66,819 0/0:46,0:47:99:0,132,1604 19 12812168 . CATAGAAAGCCG C 304.75 . AC=3;AF=0.036;AN=84;BaseQRankSum=12.475;DP=1942;FS=820.999;HRun=0;HaplotypeScore=393.3967;InbreedingCoeff=-0.0511;MQ=59.22;MQ0=0;MQRankSum=10.069;QD=2.27;ReadPosRankSum=-12.938 GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,102,5234 0/0:31,0:31:90.20:0,90,4735 0/0:37,0:37:99:0,107,5854 0/0:80,0:80:99:0,241,13402 0/0:69,0:69:99:0,202,11082 0/0:36,0:36:99:0,102,5455 0/0:34,0:34:99:0,99,5606 0/0:53,0:53:99:0,157,8657 0/0:36,6:42:1.12:5,0,5531 0/0:39,5:44:13.68:0,14,6227 0/0:40,0:40:99:0,117,5857 0/0:30,0:30:90.31:0,90,4954 0/1:26,6:32:78.21:78,0,4148 0/0:40,4:44:20.54:0,21,6756 0/0:100,0:100:99:0,298,15967 0/0:30,0:30:87.29:0,87,4868 0/0:35,0:35:99:0,102,5377 0/0:49,0:49:99:0,141,7326 0/0:69,0:69:99:0,177,10420 0/0:63,0:63:99:0,178,9929 0/0:72,0:72:99:0,208,11197 0/0:43,0:43:99:0,124,6667 0/0:70,0:70:99:0,211,11515 0/0:47,0:47:99:0,141,7530 0/0:45,0:45:99:0,135,7135 0/0:35,0:35:99:0,102,5145 0/0:29,0:29:87.30:0,87,4761 0/0:43,0:43:99:0,114,6299 0/0:17,0:17:46.06:0,46,2807 0/1:34,14:48:99:217,0,4778 0/0:26,0:26:78.27:0,78,4508 0/0:64,18:82:11.36:0,11,8931 0/0:56,0:56:99:0,163,8681 0/0:36,0:36:99:0,105,5929 0/0:29,0:29:87.29:0,87,4622 0/1:42,12:54:93.37:93,0,6485 0/0:76,15:91:62.19:0,62,10774 0/0:32,0:31:86.30:0,86,5049 0/0:24,0:23:69.23:0,69,3407 0/0:35,6:41:6.13:0,6,5295 0/0:33,0:33:87.38:0,87,5085 0/0:37,0:37:99:0,104,5718 19 12812169 . A G 532.29 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.871;DP=1942;Dels=0.04;FS=0.000;HRun=0;HaplotypeScore=22.9359;InbreedingCoeff=-0.0120;MQ=59.22;MQ0=0;MQRankSum=-0.040;QD=15.21;ReadPosRankSum=1.912 GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,99,1174 0/0:31,0:31:87.26:0,87,1052 0/0:37,0:37:99:0,105,1271 0/0:80,0:80:99:0,235,2841 0/0:69,0:69:99:0,199,2443 0/0:36,0:36:99:0,102,1305 0/0:34,0:34:99:0,99,1234 0/0:53,0:53:99:0,156,1923 0/0:36,0:36:99:0,105,1281 0/0:39,0:39:99:0,111,1314 0/0:40,0:40:99:0,114,1383 0/0:30,0:30:90.24:0,90,1072 0/0:26,0:26:78.24:0,78,954 0/0:40,0:40:99:0,120,1442 0/0:100,0:100:99:0,289,3475 0/0:29,0:30:87.25:0,87,1048 0/0:35,0:35:99:0,102,1216 0/0:48,0:49:99:0,135,1636 0/0:68,0:69:99:0,190,2336 0/0:63,0:63:99:0,172,2098 0/0:71,0:72:99:0,205,2437 0/0:43,0:43:99:0,123,1460 0/0:70,0:70:99:0,211,2548 0/0:47,0:47:99:0,141,1717 0/0:45,0:45:99:0,135,1628 0/1:14,21:35:99:579,0,404 0/0:29,0:29:84.25:0,84,1016 0/0:43,0:43:99:0,114,1395 0/0:17,0:17:48.15:0,48,581 0/0:34,0:34:96.29:0,96,1157 0/0:26,0:26:78.24:0,78,961 0/0:64,0:64:99:0,175,2101 0/0:56,0:56:99:0,162,1928 0/0:36,0:36:99:0,105,1278 0/0:29,0:29:87.27:0,87,1065 0/0:42,0:42:99:0,120,1461 0/0:76,0:76:99:0,205,2465 0/0:32,0:32:90.27:0,90,1092 0/0:24,0:24:66.20:0,66,798 0/0:35,0:35:99:0,99,1185 0/0:33,0:33:90.26:0,90,1092 0/0:37,0:37:99:0,108,1305 19 12812179 . G C 298.21 . AC=7;AF=0.083;AN=84;BaseQRankSum=-12.102;DP=2368;Dels=0.04;FS=1996.416;HRun=2;HaplotypeScore=23.5471;InbreedingCoeff=-0.1069;MQ=59.12;MQ0=0;MQRankSum=2.269;QD=0.90;ReadPosRankSum=-20.209 GT:AD:DP:GQ:PL 0/1:29,16:46:55.06:55,0,749 0/0:31,5:36:48.23:0,48,796 0/1:38,12:50:13.79:14,0,967 0/0:86,17:103:99:0,127,2579 0/0:74,18:92:75.79:0,76,2124 0/0:35,12:47:40.89:0,41,1050 0/0:33,9:42:33.97:0,34,966 0/0:59,12:71:99:0,123,1834 0/0:38,0:38:99:0,111,1197 0/0:40,4:44:99:0,117,1255 0/0:38,8:47:41.29:0,41,1013 0/0:31,11:42:2.08:2,0,773 0/0:24,3:27:72.18:0,72,772 0/0:45,4:49:99:0,129,1376 0/0:105,25:130:99:0,208,2751 0/0:34,5:39:84.31:0,84,907 0/0:30,11:41:2.81:0,3,766 0/1:40,10:50:70.03:70,0,1102 0/0:69,17:86:21.10:0,21,1808 0/0:69,23:92:84.59:0,85,1819 0/0:71,20:91:40.70:0,41,1829 0/0:41,11:52:12.89:0,13,1052 0/0:69,20:89:59.11:0,59,2048 0/0:46,11:57:55.78:0,56,1351 0/0:40,9:49:90.83:0,91,1256 0/0:41,8:49:92.89:0,93,1275 0/1:32,6:38:13.17:13,0,859 0/0:42,9:51:75.15:0,75,1118 0/0:23,5:28:36.46:0,36,604 0/0:31,0:31:84.21:0,84,909 0/0:29,10:39:48.46:0,48,821 0/0:62,1:63:99:0,162,1724 0/1:51,23:74:99:127,0,1191 0/0:38,12:50:67.52:0,68,1004 0/1:28,11:39:28.73:29,0,792 0/0:38,1:39:99:0,108,1151 0/0:73,2:75:99:0,207,2205 0/0:33,10:43:6.67:0,7,873 0/1:26,10:36:99:100,0,520 0/0:33,1:34:68.55:0,69,976 0/0:29,3:32:54.58:0,55,839 0/0:41,10:51:46.23:0,46,1057 19 12812262 . G A 3324.50 . AC=4;AF=0.048;AN=84;BaseQRankSum=-10.098;DP=2689;Dels=0.00;FS=0.380;HRun=1;HaplotypeScore=1.8042;InbreedingCoeff=-0.0500;MQ=58.77;MQ0=0;MQRankSum=-0.578;QD=15.68;ReadPosRankSum=-3.004 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,123,1529 0/0:53,0:53:99:0,129,1654 0/0:60,0:60:99:0,153,1988 0/0:107,0:107:99:0,307,4085 0/0:83,0:83:99:0,235,3105 0/0:45,0:45:99:0,129,1748 0/0:44,0:44:99:0,123,1678 0/0:66,0:66:99:0,190,2515 0/0:56,0:56:99:0,141,1818 0/0:44,0:44:99:0,120,1512 0/0:46,0:46:99:0,126,1593 0/0:45,0:45:99:0,111,1427 0/0:39,0:39:99:0,108,1377 0/0:56,0:56:99:0,150,1869 0/0:176,0:178:99:0,451,5681 0/0:54,0:55:99:0,156,1963 0/0:48,0:48:99:0,126,1588 0/0:60,0:60:99:0,156,1956 0/0:117,0:118:99:0,286,3607 0/0:89,0:89:99:0,235,2944 0/0:109,0:110:99:0,289,3601 0/0:73,0:73:99:0,196,2497 0/0:95,0:95:99:0,256,3474 0/0:47,0:47:99:0,138,1829 0/0:65,0:65:99:0,181,2371 0/0:38,0:38:99:0,108,1416 0/0:61,0:61:99:0,162,2021 0/0:57,0:58:99:0,162,2023 0/0:44,0:44:99:0,114,1463 0/0:43,0:44:99:0,123,1557 0/1:26,30:56:99:873,0,729 0/0:94,0:94:99:0,238,3026 0/1:30,32:62:99:966,0,870 0/0:54,0:54:99:0,150,1875 0/0:57,0:57:99:0,150,1884 0/0:55,0:55:99:0,147,1828 0/0:111,0:112:99:0,301,3716 0/0:43,0:43:99:0,117,1484 0/0:42,0:43:99:0,120,1521 0/1:22,24:46:99:680,0,637 0/1:21,27:48:99:805,0,577 0/0:47,0:47:99:0,135,1689 19 12826465 . C T 274.65 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.307;DP=1043;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.7581;InbreedingCoeff=-0.0246;MQ=58.86;MQ0=0;MQRankSum=-0.049;QD=10.17;ReadPosRankSum=0.397 GT:AD:DP:GQ:PL 0/0:17,0:17:51.14:0,51,615 0/0:16,0:16:42.12:0,42,521 0/0:18,0:18:51.16:0,51,640 0/0:48,0:48:99:0,129,1709 0/0:43,0:43:99:0,126,1665 0/0:21,0:21:60.20:0,60,809 0/0:29,0:29:81.27:0,81,1097 0/0:30,0:30:87.27:0,87,1148 0/0:18,0:18:48.15:0,48,610 0/0:10,0:10:30.09:0,30,368 0/0:26,0:26:72.23:0,72,922 0/0:18,0:18:45.15:0,45,592 0/0:18,0:18:54.17:0,54,688 0/0:19,1:20:54.17:0,54,670 0/0:83,0:83:99:0,202,2570 0/0:27,0:27:75.23:0,75,943 0/0:20,0:20:57.18:0,57,720 0/0:6,0:6:18.06:0,18,225 0/0:34,0:34:99:0,99,1252 0/0:33,0:33:84.25:0,84,1050 0/0:23,0:23:63.19:0,63,772 0/0:22,0:22:66.20:0,66,829 0/0:43,0:43:99:0,123,1655 0/0:21,0:21:51.16:0,51,681 0/0:35,0:35:99:0,99,1345 0/0:30,0:30:81.25:0,81,1062 0/0:24,0:24:63.20:0,63,814 0/0:15,0:15:39.11:0,39,484 0/0:12,0:12:33.11:0,33,424 0/0:26,0:26:69.21:0,69,874 0/0:13,0:13:39.12:0,39,490 0/0:21,0:21:63.19:0,63,773 0/0:41,0:41:99:0,108,1396 0/1:8,6:14:99:151,0,241 0/1:7,6:13:99:186,0,229 0/0:19,0:19:51.15:0,51,633 0/0:37,0:37:93.29:0,93,1205 0/0:30,0:30:78.25:0,78,1000 0/0:16,0:16:45.14:0,45,560 0/0:21,0:21:63.20:0,63,796 0/0:11,0:11:30.10:0,30,389 0/0:21,0:21:60.19:0,60,773 19 12878909 . T C 5110.59 . AC=34;AF=0.405;AN=84;BaseQRankSum=-31.999;DP=4140;DS;Dels=0.00;FS=588.498;HRun=2;HaplotypeScore=2.7741;InbreedingCoeff=-0.6728;MQ=58.32;MQ0=0;MQRankSum=-1.552;QD=1.53;ReadPosRankSum=-14.832 GT:AD:DP:GQ:PL 0/1:42,20:62:82.24:82,0,794 0/1:39,37:76:99:213,0,872 0/1:33,40:73:99:226,0,585 0/1:91,112:204:99:358,0,2075 0/1:70,109:180:99:425,0,1598 0/1:71,84:156:99:191,0,1233 0/0:76,72:149:5.65:0,6,1653 0/0:67,64:132:30.38:0,30,1323 0/1:41,32:73:99:117,0,1133 0/1:45,30:75:99:145,0,991 0/1:39,43:82:63.34:63,0,1009 0/1:45,32:77:49.22:49,0,1013 0/1:34,16:50:86.78:87,0,619 0/1:33,33:67:13.16:13,0,949 0/1:101,112:214:99:565,0,2060 0/1:37,34:71:87.87:88,0,829 0/1:52,29:82:38.47:38,0,1136 0/1:38,29:69:30.96:31,0,962 0/1:59,48:107:99:268,0,1286 0/0:78,47:125:43.01:0,43,1805 0/1:58,58:117:99:446,0,1310 0/1:55,38:93:34.69:35,0,988 0/1:86,124:210:99:294,0,1874 0/1:51,54:105:66.26:66,0,1090 0/1:78,75:155:36.90:37,0,1752 0/1:53,57:110:16.69:17,0,933 0/0:27,25:52:47.64:0,48,863 0/1:31,30:61:99:166,0,853 0/1:35,23:58:34.71:35,0,940 0/1:60,30:90:0.64:1,0,1395 0/1:36,27:63:39.57:40,0,846 0/0:79,44:124:77.37:0,77,1816 0/0:55,41:97:69.45:0,69,1254 0/1:31,35:68:99:156,0,742 0/1:38,27:66:99:196,0,907 0/1:39,35:74:58.55:59,0,930 0/1:66,65:132:99:295,0,1342 0/1:38,37:75:99:103,0,944 0/1:42,32:74:27.76:28,0,868 0/0:35,22:57:9.35:0,9,928 0/0:38,20:59:43.86:0,44,939 0/1:34,42:76:99:179,0,710 19 12910708 . A C 111.16 . AC=5;AF=0.060;AN=84;BaseQRankSum=-18.941;DP=2917;Dels=0.00;FS=1016.315;HRun=2;HaplotypeScore=1.8201;InbreedingCoeff=-0.1033;MQ=49.70;MQ0=9;MQRankSum=-14.703;QD=0.35;ReadPosRankSum=-13.731 GT:AD:DP:GQ:PL 0/0:34,19:54:44.71:0,45,1101 0/0:34,24:58:8.52:0,9,929 0/1:35,19:54:11.85:12,0,1046 0/0:72,54:126:77.56:0,78,2193 0/0:46,41:90:64.86:0,65,1376 0/0:38,35:73:12.82:0,13,1083 0/0:43,32:75:25.92:0,26,1319 0/0:46,32:78:4.58:0,5,1299 0/0:35,16:52:38.24:0,38,1013 0/0:28,17:45:58.54:0,59,904 0/0:30,15:45:28.19:0,28,825 0/0:32,25:58:32.16:0,32,953 0/0:33,21:55:31.04:0,31,923 0/0:49,24:73:7.72:0,8,1467 0/0:95,57:152:1.96:0,2,2662 0/1:27,22:49:78.41:78,0,747 0/0:30,22:52:19.23:0,19,825 0/0:28,25:53:0.33:11,0,834 0/0:60,31:91:40.76:0,41,1775 0/0:72,35:107:99:0,126,2076 0/0:64,33:97:1.41:4,0,1732 0/0:44,30:74:64.13:0,64,1309 0/1:53,46:99:15.36:15,0,1474 0/0:33,29:62:49.14:0,49,1048 0/0:40,39:80:87.72:0,88,1319 0/0:30,32:62:30.98:0,31,909 0/1:28,28:56:15.49:15,0,794 0/0:45,36:81:61.34:0,61,1306 0/0:30,11:41:53.80:0,54,919 0/0:29,23:52:53.57:0,54,889 0/0:22,14:36:6.27:0,6,690 0/0:74,30:104:99:0,167,2247 0/0:55,28:83:33.99:0,34,1523 0/0:36,20:57:59.12:0,59,1187 0/0:39,24:63:84.62:0,85,1225 0/0:31,25:58:41.18:0,41,950 0/0:54,34:90:23.53:0,24,1401 0/0:28,17:45:19.94:0,20,829 0/1:36,22:58:76.45:76,0,1068 0/0:38,22:60:48.21:0,48,1054 0/0:33,19:52:58.59:0,59,944 0/0:40,27:67:7.83:0,8,1184 19 12917520 . A G 61.28 . AC=1;AF=0.013;AN=78;BaseQRankSum=2.908;DP=198;Dels=0.00;FS=5.789;HRun=2;HaplotypeScore=0.1379;InbreedingCoeff=-0.0569;MQ=58.29;MQ0=0;MQRankSum=1.005;QD=12.26;ReadPosRankSum=2.473 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,74 0/0:5,0:5:15.05:0,15,188 0/0:6,0:6:18.05:0,18,217 0/0:6,0:6:18.05:0,18,209 0/0:5,0:5:12.03:0,12,142 0/0:7,0:7:18.06:0,18,236 0/0:8,0:8:21.07:0,21,267 0/0:3,0:3:9.03:0,9,112 0/0:5,0:5:12.04:0,12,155 ./. 0/0:3,0:3:6.01:0,6,67 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,36 0/0:7,0:7:21.06:0,21,257 0/0:10,0:10:27.07:0,27,305 0/0:6,0:6:15.05:0,15,181 0/0:6,0:6:15.05:0,15,180 0/0:7,0:7:18.05:0,18,218 0/0:5,0:5:12.04:0,12,150 0/0:10,0:10:21.07:0,21,262 0/0:5,0:5:12.04:0,12,152 0/0:4,0:4:12.03:0,12,140 0/0:10,0:10:30.09:0,30,376 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.03:0,9,111 0/1:2,3:5:52.63:107,0,53 0/0:2,0:2:6.02:0,6,71 0/0:4,0:4:12.04:0,12,143 0/0:3,0:3:9:0,9,89 0/0:8,0:8:21.07:0,21,266 0/0:2,0:2:6.01:0,6,66 0/0:9,0:9:24.08:0,24,301 0/0:4,0:4:12.04:0,12,154 0/0:7,0:7:21.07:0,21,263 ./. 0/0:2,0:2:6.02:0,6,73 0/0:6,0:6:18.03:0,18,204 0/0:5,0:5:15.05:0,15,182 0/0:3,0:3:9.03:0,9,111 0/0:3,0:3:9.03:0,9,110 ./. 0/0:8,0:8:21.07:0,21,258 19 12917562 . C A 5.06 . AC=1;AF=0.013;AN=80;BaseQRankSum=-2.259;DP=268;Dels=0.00;FS=5.999;HRun=2;HaplotypeScore=0.2461;InbreedingCoeff=-0.0493;MQ=58.50;MQ0=0;MQRankSum=0.061;QD=0.72;ReadPosRankSum=-0.753 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,179 0/0:5,0:5:15.03:0,15,174 0/0:8,0:8:21.07:0,21,271 0/0:8,0:8:24.07:0,24,303 0/0:10,0:10:24.08:0,24,330 0/0:6,0:6:18.06:0,18,237 0/0:3,0:3:6.02:0,6,85 0/0:4,0:4:12.03:0,12,150 0/0:6,0:6:18.06:0,18,232 0/0:4,0:4:12.04:0,12,148 0/0:2,0:2:6.02:0,6,76 ./. 0/0:3,0:3:9.02:0,9,94 0/0:8,0:8:24.08:0,24,303 0/0:15,0:15:42.13:0,42,528 0/0:8,0:8:21.05:0,21,250 0/0:8,0:8:24.08:0,24,304 0/0:10,0:10:30.09:0,30,368 0/0:12,0:12:33.10:0,33,411 0/0:4,1:5:0.15:15,0,140 0/1:5,2:7:46.72:47,0,144 0/0:3,0:3:9.03:0,9,110 0/0:15,0:15:45.14:0,45,589 0/0:7,0:7:15.05:0,15,196 0/0:3,0:3:9.03:0,9,117 0/0:6,0:6:18.05:0,18,229 0/0:3,0:3:6.02:0,6,75 0/0:6,0:6:18.03:0,18,206 ./. 0/0:8,0:8:24.05:0,24,286 0/0:3,0:3:9.03:0,9,111 0/0:15,0:16:39.12:0,39,494 0/0:4,0:4:9.03:0,9,115 0/0:8,0:8:24.08:0,24,300 0/0:4,0:4:12.04:0,12,156 0/0:5,0:5:15.05:0,15,188 0/0:5,0:5:12.04:0,12,157 0/0:6,0:6:9.03:0,9,127 0/0:10,0:10:30.08:0,30,360 0/0:6,0:6:15.05:0,15,184 0/0:6,0:6:18.06:0,18,223 0/0:7,0:7:18.06:0,18,236 19 13041442 . G A 1701.86 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.165;DP=1978;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.0912;InbreedingCoeff=-0.0244;MQ=59.08;MQ0=0;MQRankSum=-0.269;QD=17.02;ReadPosRankSum=-0.535 GT:AD:DP:GQ:PL 0/0:34,0:34:87.28:0,87,1116 0/0:39,0:39:99:0,102,1276 0/0:39,0:39:99:0,99,1251 0/0:94,0:94:99:0,241,3189 0/0:81,0:81:99:0,226,2994 0/0:41,0:41:99:0,102,1343 0/0:39,0:39:93.30:0,93,1260 0/0:52,0:52:99:0,129,1686 0/0:38,2:40:60.59:0,61,1222 0/0:40,0:40:99:0,114,1395 0/0:43,1:44:85.11:0,85,1422 0/0:42,1:43:90.65:0,91,1368 0/0:27,0:27:72.22:0,72,904 0/0:43,0:43:99:0,120,1529 0/0:125,0:126:99:0,319,4001 0/0:42,0:42:99:0,117,1445 0/0:45,0:45:99:0,120,1510 0/1:14,23:37:99:627,0,359 0/1:23,39:63:99:1137,0,507 0/0:53,0:53:99:0,150,1895 0/0:60,0:60:99:0,168,2053 0/0:40,0:40:99:0,120,1464 0/0:91,0:91:99:0,247,3207 0/0:44,0:44:99:0,114,1507 0/0:52,1:53:99:0,132,1737 0/0:37,0:37:90.29:0,90,1200 0/0:21,0:21:57.18:0,57,720 0/0:41,1:42:82.10:0,82,1375 0/0:26,0:26:63.19:0,63,795 0/0:25,0:25:72.22:0,72,879 0/0:37,0:37:99:0,102,1286 0/0:65,0:65:99:0,180,2274 0/0:53,0:53:99:0,144,1843 0/0:36,0:36:99:0,108,1341 0/0:45,0:45:99:0,120,1523 0/0:43,0:43:99:0,114,1442 0/0:59,0:59:99:0,168,2022 0/0:45,0:45:99:0,123,1506 0/0:28,0:28:78.24:0,78,980 0/0:33,0:33:93.27:0,93,1160 0/0:33,0:33:93.28:0,93,1156 0/0:40,0:40:99:0,111,1384 19 13220436 . C T 602.09 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.189;DP=1350;Dels=0.00;FS=2.736;HRun=1;HaplotypeScore=1.4611;InbreedingCoeff=-0.0244;MQ=58.71;MQ0=0;MQRankSum=0.008;QD=13.09;ReadPosRankSum=-0.199 GT:AD:DP:GQ:PL 0/0:29,0:29:75.22:0,75,937 0/0:25,0:25:75.23:0,75,941 0/0:16,0:16:48.15:0,48,598 0/0:65,0:65:99:0,193,2475 0/0:53,0:53:99:0,153,2017 0/0:38,0:38:99:0,111,1470 0/0:33,0:33:87.28:0,87,1174 0/0:32,0:32:90.26:0,90,1141 0/0:18,0:18:54.17:0,54,679 0/0:36,0:36:99:0,99,1243 0/0:21,0:21:60.19:0,60,748 0/0:19,0:19:57.16:0,57,683 0/0:16,0:16:42.13:0,42,523 0/0:28,0:29:81.22:0,81,970 0/0:63,0:63:99:0,175,2149 0/0:25,0:25:72.22:0,72,901 0/0:22,0:22:63.19:0,63,790 0/0:33,0:33:99:0,99,1241 0/0:41,0:41:99:0,117,1446 0/0:61,0:61:99:0,168,2103 0/0:33,0:33:87.27:0,87,1099 0/0:39,0:39:99:0,114,1395 0/0:78,0:78:99:0,226,3006 0/0:35,0:35:96.30:0,96,1266 0/0:42,0:42:99:0,117,1513 0/0:27,0:27:78.24:0,78,1017 0/0:18,0:18:54.15:0,54,668 0/0:18,0:18:51.16:0,51,649 0/0:21,0:21:54.17:0,54,691 0/1:9,12:21:99:366,0,271 0/1:14,11:25:99:298,0,423 0/0:41,0:41:99:0,111,1393 0/0:43,0:43:99:0,123,1545 0/0:32,0:32:96.27:0,96,1168 0/0:22,0:22:60.18:0,60,747 0/0:29,0:29:84.26:0,84,1048 0/0:35,0:35:99:0,102,1263 0/0:27,0:27:81.25:0,81,1002 0/0:26,0:26:72.21:0,72,884 0/0:24,0:24:72.22:0,72,873 0/0:16,0:16:45.14:0,45,560 0/0:23,0:23:69.21:0,69,855 19 13249022 . C T 6134.29 . AC=2;AF=0.024;AN=84;BaseQRankSum=-15.346;DP=4638;DS;Dels=0.00;FS=8.099;HRun=0;HaplotypeScore=3.7111;InbreedingCoeff=-0.0244;MQ=59.02;MQ0=0;MQRankSum=1.057;QD=12.32;ReadPosRankSum=0.880 GT:AD:DP:GQ:PL 0/0:92,0:92:99:0,262,3168 0/0:87,0:88:99:0,250,3023 0/0:66,0:67:99:0,184,2185 0/1:142,106:248:99:2790,0,4428 0/1:126,124:250:99:3345,0,3866 0/0:168,0:168:99:0,457,5970 0/0:128,0:128:99:0,361,4672 0/0:156,0:156:99:0,439,5677 0/0:69,0:69:99:0,199,2415 0/0:55,0:55:99:0,150,1814 0/0:72,0:72:99:0,205,2484 0/0:74,0:74:99:0,214,2561 0/0:53,0:53:99:0,141,1748 0/0:78,0:78:99:0,223,2708 0/0:249,0:250:99:0,674,8262 0/0:105,0:105:99:0,307,3673 0/0:79,0:79:99:0,217,2675 0/0:66,0:66:99:0,187,2249 0/0:124,0:127:99:0,337,4094 0/0:172,0:173:99:0,472,5813 0/0:133,0:133:99:0,352,4225 0/0:115,0:115:99:0,337,4033 0/0:249,0:250:99:0,689,9003 0/0:127,0:129:99:0,349,4526 0/0:173,0:173:99:0,488,6372 0/0:134,0:134:99:0,373,4894 0/0:66,0:66:99:0,190,2281 0/0:67,0:67:99:0,190,2313 0/0:49,0:49:99:0,141,1703 0/0:71,0:71:99:0,205,2506 0/0:71,0:71:99:0,208,2527 0/0:154,0:154:99:0,427,5212 0/0:101,0:102:99:0,274,3314 0/0:78,0:78:99:0,211,2566 0/0:60,0:60:99:0,168,2033 0/0:82,0:82:99:0,235,2805 0/0:129,0:130:99:0,355,4248 0/0:96,0:96:99:0,259,3111 0/0:68,0:68:99:0,202,2408 0/0:63,0:63:99:0,175,2105 0/0:61,0:61:99:0,171,2068 0/0:88,0:88:99:0,235,2849 19 13419235 . G C 1283.43 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.113;DP=1105;Dels=0.00;FS=14.560;HRun=0;HaplotypeScore=0.4623;InbreedingCoeff=-0.0244;MQ=59.30;MQ0=0;MQRankSum=2.421;QD=13.95;ReadPosRankSum=0.150 GT:AD:DP:GQ:PL 0/0:22,0:22:57.18:0,57,741 0/0:17,0:17:51.16:0,51,647 0/0:28,0:28:78.24:0,78,989 0/0:25,0:25:75.24:0,75,1013 0/0:20,0:21:60.20:0,60,830 0/0:14,0:14:39.13:0,39,537 0/0:19,0:19:57.19:0,57,788 0/0:16,0:16:45.15:0,45,614 0/0:27,0:27:81.25:0,81,1013 0/0:24,0:24:69.21:0,69,877 0/0:22,0:22:60.18:0,60,761 0/0:20,0:20:54.17:0,54,698 0/0:23,0:23:66.20:0,66,822 0/0:22,0:22:60.19:0,60,778 0/0:73,0:73:99:0,196,2539 0/0:21,0:21:63.20:0,63,805 0/0:21,0:22:60.19:0,60,764 0/0:25,0:25:75.24:0,75,947 0/0:47,0:47:99:0,132,1677 0/0:34,0:34:90.28:0,90,1169 0/1:20,19:39:99:593,0,649 0/0:37,0:37:99:0,105,1312 0/0:21,0:21:63.21:0,63,873 0/0:17,0:17:48.16:0,48,659 0/0:28,0:29:75.25:0,75,1055 0/0:17,0:17:51.17:0,51,698 0/0:16,0:16:48.15:0,48,610 0/0:19,0:19:54.17:0,54,697 0/0:23,0:23:63.20:0,63,802 0/0:25,0:25:69.22:0,69,885 0/0:18,0:18:54.17:0,54,685 0/1:28,25:53:99:753,0,870 0/0:31,0:31:93.29:0,93,1173 0/0:33,0:33:99:0,99,1251 0/0:22,0:22:57.18:0,57,734 0/0:28,0:28:78.24:0,78,986 0/0:45,0:45:99:0,120,1542 0/0:20,0:20:54.17:0,54,698 0/0:20,0:20:60.19:0,60,761 0/0:23,0:23:60.19:0,60,769 0/0:24,0:24:72.22:0,72,907 0/0:23,0:23:66.21:0,66,859 19 13470510 . G A 222.96 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.587;DP=773;Dels=0.00;FS=8.672;HRun=0;HaplotypeScore=0.3986;InbreedingCoeff=-0.0330;MQ=59.40;MQ0=0;MQRankSum=0.085;QD=9.69;ReadPosRankSum=-0.622 GT:AD:DP:GQ:PL 0/0:19,0:19:54.17:0,54,661 0/0:18,0:18:48.15:0,48,599 0/0:13,0:13:36.11:0,36,442 0/0:25,0:25:66.20:0,66,852 0/0:23,0:24:63.21:0,63,859 0/0:13,0:13:39.12:0,39,502 0/0:13,0:13:36.11:0,36,466 0/0:7,0:7:21.07:0,21,275 0/0:16,0:16:48.15:0,48,583 0/0:10,0:10:27.08:0,27,328 0/0:20,0:20:54.17:0,54,671 0/0:21,0:21:54.17:0,54,661 0/0:17,0:17:45.13:0,45,554 0/0:21,0:21:60.18:0,60,709 0/0:57,0:57:99:0,153,1830 0/0:12,0:12:27.05:0,27,313 0/0:22,0:23:63.19:0,63,764 0/0:14,0:14:42.12:0,42,490 0/0:20,0:20:54.15:0,54,644 0/0:30,0:30:78.24:0,78,966 0/0:20,0:21:48.14:0,48,576 0/0:19,0:19:51.14:0,51,617 0/0:21,0:21:60.19:0,60,802 0/1:6,8:14:99:243,0,200 0/0:20,0:20:54.17:0,54,714 0/1:7,2:9:41.86:42,0,218 0/0:12,0:12:33.09:0,33,388 0/0:23,0:23:66.20:0,66,794 0/0:13,0:13:36.10:0,36,423 0/0:13,0:13:39.12:0,39,466 0/0:15,0:15:45.12:0,45,524 0/0:24,0:24:66.17:0,66,783 0/0:18,0:18:54.16:0,54,645 0/0:10,0:10:30.09:0,30,354 0/0:10,1:11:1.76:3,0,331 0/0:12,0:12:33.10:0,33,416 0/0:40,0:40:99:0,108,1320 0/0:23,0:23:63.18:0,63,757 0/0:15,0:15:42.13:0,42,525 0/0:14,0:14:42.12:0,42,493 0/0:21,0:21:57.17:0,57,683 0/0:12,0:12:27.09:0,27,358 19 13470522 . T C 443.51 . AC=2;AF=0.024;AN=84;BaseQRankSum=6.500;DP=647;Dels=0.00;FS=4.835;HRun=3;HaplotypeScore=0.3759;InbreedingCoeff=-0.0256;MQ=59.38;MQ0=0;MQRankSum=-0.422;QD=11.37;ReadPosRankSum=0.992 GT:AD:DP:GQ:PL 0/0:16,0:16:42.13:0,42,527 0/0:16,0:16:45.14:0,45,565 0/0:9,0:9:24.08:0,24,307 0/1:11,12:23:99:389,0,307 0/0:23,0:23:63.20:0,63,826 0/0:13,0:13:33.09:0,33,422 0/0:11,0:11:33.11:0,33,427 0/0:5,0:5:15.05:0,15,183 0/0:15,0:15:45.14:0,45,565 0/0:8,0:8:24.08:0,24,296 0/0:19,0:19:51.16:0,51,638 0/0:14,0:14:42.13:0,42,520 0/0:12,0:12:36.11:0,36,441 0/0:18,0:18:51.16:0,51,646 0/0:50,0:51:99:0,132,1653 0/0:9,0:9:21.07:0,21,267 0/0:21,0:21:57.17:0,57,700 0/0:11,0:11:33.10:0,33,409 0/0:21,0:21:60.18:0,60,733 0/0:24,0:24:66.20:0,66,815 0/0:15,0:15:39.12:0,39,492 0/0:18,0:18:48.15:0,48,613 0/1:12,4:16:99:117,0,421 0/0:9,0:9:27.09:0,27,350 0/0:11,0:11:33.11:0,33,425 0/0:5,0:5:15.05:0,15,186 0/0:10,0:10:30.09:0,30,358 0/0:22,0:22:63.20:0,63,778 0/0:13,0:13:36.11:0,36,451 0/0:12,0:12:36.11:0,36,441 0/0:13,0:13:39.12:0,39,483 0/0:23,0:23:60.18:0,60,756 0/0:15,0:15:45.14:0,45,552 0/0:8,0:8:24.08:0,24,304 0/0:9,0:9:27.08:0,27,325 0/0:10,0:10:27.09:0,27,343 0/0:29,0:29:84.26:0,84,1041 0/0:19,0:19:54.16:0,54,650 0/0:12,0:12:33.11:0,33,422 0/0:12,0:12:36.11:0,36,447 0/0:18,0:18:51.16:0,51,636 0/0:9,0:9:24.08:0,24,302 19 13482554 . C T 186.57 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.036;DP=376;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1676;InbreedingCoeff=-0.0324;MQ=58.79;MQ0=0;MQRankSum=1.767;QD=10.97;ReadPosRankSum=0.270 GT:AD:DP:GQ:PL 0/1:1,7:8:19.58:203,0,20 0/1:7,2:9:45.54:46,0,190 0/0:14,0:14:33.10:0,33,411 0/0:7,0:7:15.05:0,15,192 0/0:4,0:4:12.04:0,12,146 0/0:3,0:3:6.02:0,6,82 0/0:7,0:7:21.06:0,21,256 0/0:5,0:5:12.04:0,12,158 0/0:11,0:12:30.08:0,30,338 0/0:6,0:6:18.04:0,18,195 0/0:9,0:9:27.08:0,27,313 0/0:9,0:9:24.06:0,24,284 0/0:8,0:8:21.06:0,21,256 0/0:6,0:6:15.04:0,15,174 0/0:28,0:28:81.22:0,81,943 0/0:6,0:6:18.05:0,18,203 0/0:13,0:13:39.11:0,39,449 0/0:12,0:12:36.07:0,36,387 0/0:11,0:11:30.09:0,30,354 0/0:12,0:12:33.09:0,33,377 0/0:7,0:7:21.06:0,21,256 0/0:13,0:13:36.06:0,36,407 0/0:10,0:10:24.07:0,24,295 0/0:2,0:2:3.01:0,3,45 0/0:4,0:4:9.03:0,9,117 0/0:4,0:4:9.03:0,9,116 0/0:6,0:6:15.04:0,15,176 0/0:6,0:6:18.05:0,18,205 0/0:6,0:6:18.05:0,18,213 0/0:15,0:15:42.10:0,42,462 0/0:10,0:10:30.07:0,30,332 0/0:16,0:16:42.11:0,42,500 0/0:11,0:11:30.09:0,30,356 0/0:12,0:12:30.08:0,30,341 0/0:8,0:8:24.04:0,24,256 0/0:10,0:10:24.07:0,24,276 0/0:9,0:9:27.08:0,27,317 0/0:5,0:5:12.03:0,12,147 0/0:7,0:7:18.05:0,18,210 0/0:7,0:7:18.05:0,18,217 0/0:6,0:6:18.05:0,18,210 0/0:13,0:13:39.11:0,39,452 19 13563721 . T C 32.01 . AC=1;AF=0.012;AN=84;BaseQRankSum=-30.300;DP=9338;DS;Dels=0.01;FS=522.601;HRun=2;HaplotypeScore=16.9198;InbreedingCoeff=-0.0120;MQ=59.47;MQ0=0;MQRankSum=1.232;QD=0.13;ReadPosRankSum=-19.273 GT:AD:DP:GQ:PL 0/0:177,32:209:99:0,367,4739 0/0:163,29:193:99:0,397,4613 0/0:181,50:232:99:0,394,5093 0/0:174,76:250:99:0,179,3827 0/0:174,74:250:99:0,303,4501 0/0:201,47:250:99:0,444,5553 0/0:197,44:242:99:0,435,5161 0/0:203,46:250:99:0,427,4951 0/0:184,39:224:99:0,392,5005 0/0:157,41:200:99:0,335,4160 0/0:167,37:205:99:0,306,4626 0/0:168,45:213:99:0,424,4947 0/0:159,37:196:99:0,353,4223 0/0:148,41:190:99:0,290,4224 0/1:119,130:250:78.22:78,0,2406 0/0:169,30:199:99:0,378,4501 0/0:159,40:199:99:0,335,4432 0/0:168,45:214:99:0,310,4678 0/0:185,65:250:99:0,318,5086 0/0:204,45:250:99:0,433,4863 0/0:153,41:194:99:0,175,4116 0/0:198,36:234:99:0,481,5500 0/0:175,74:250:99:0,298,4346 0/0:211,37:250:99:0,461,5848 0/0:196,54:250:99:0,405,5197 0/0:199,51:250:99:0,415,5439 0/0:143,27:170:99:0,307,3782 0/0:172,50:222:99:0,382,4885 0/0:129,29:159:99:0,176,3398 0/0:153,39:192:99:0,298,4121 0/0:146,44:191:99:0,283,3751 0/0:190,57:250:99:0,379,4789 0/0:214,35:249:99:0,489,5933 0/0:188,41:229:99:0,388,5102 0/0:163,33:197:99:0,327,4539 0/0:174,36:211:99:0,357,4916 0/0:183,67:250:99:0,122,4759 0/0:191,43:234:99:0,302,5017 0/0:169,33:202:99:0,392,4843 0/0:184,44:229:99:0,351,4986 0/0:141,33:175:99:0,269,3788 0/0:190,38:228:99:0,381,5081 19 13885484 . A G 35979.99 . 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G A 6909.94 . 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C T 6669 . 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C T 1510.55 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.310;DP=2839;Dels=0.00;FS=8.192;HRun=0;HaplotypeScore=1.5655;InbreedingCoeff=-0.0244;MQ=59.10;MQ0=0;MQRankSum=0.890;QD=10.21;ReadPosRankSum=3.187 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,120,1432 0/0:43,0:43:99:0,105,1274 0/0:35,0:35:96.26:0,96,1144 0/0:153,0:153:99:0,403,5221 0/0:142,0:142:99:0,373,4867 0/1:44,29:73:99:765,0,1176 0/0:70,0:70:99:0,196,2491 0/1:43,31:75:99:808,0,1207 0/0:55,0:55:99:0,144,1744 0/0:51,0:51:99:0,135,1609 0/0:54,0:55:99:0,144,1728 0/0:40,0:40:99:0,102,1236 0/0:41,0:41:99:0,105,1281 0/0:55,0:55:99:0,153,1825 0/0:174,0:176:99:0,457,5491 0/0:53,0:53:99:0,147,1714 0/0:46,0:46:99:0,120,1436 0/0:45,0:45:99:0,114,1420 0/0:86,0:86:99:0,220,2645 0/0:101,0:101:99:0,247,3090 0/0:93,0:94:99:0,223,2738 0/0:62,0:62:99:0,174,2024 0/0:150,0:150:99:0,394,5258 0/0:69,0:69:99:0,181,2387 0/0:117,1:118:99:0,250,3789 0/0:69,0:69:99:0,178,2326 0/0:36,0:36:93.25:0,93,1096 0/0:36,0:36:99:0,102,1202 0/0:37,0:37:99:0,102,1227 0/0:56,0:56:99:0,141,1707 0/0:54,0:54:99:0,147,1779 0/0:83,0:83:99:0,211,2552 0/0:66,0:66:99:0,171,2036 0/0:38,0:38:99:0,105,1239 0/0:45,0:45:99:0,123,1435 0/0:54,0:54:99:0,129,1624 0/0:90,0:91:99:0,226,2660 0/0:51,0:51:99:0,138,1659 0/0:59,0:59:99:0,165,1938 0/0:53,0:53:99:0,144,1645 0/0:33,0:33:87.24:0,87,1022 0/0:47,0:47:99:0,129,1550 19 14024269 . C T 279.03 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.261;DP=1456;Dels=0.00;FS=29.178;HRun=0;HaplotypeScore=1.3883;InbreedingCoeff=-0.0120;MQ=58.68;MQ0=0;MQRankSum=0.356;QD=9.97;ReadPosRankSum=-0.983 GT:AD:DP:GQ:PL 0/0:37,0:37:93.20:0,93,1043 0/0:24,0:24:63.16:0,63,738 0/0:22,0:23:60.16:0,60,677 0/0:73,0:74:99:0,193,2429 0/0:48,0:49:99:0,135,1755 0/0:53,0:54:99:0,153,1955 0/0:35,0:35:87.27:0,87,1114 0/0:33,0:33:90.26:0,90,1116 0/0:23,0:24:63.18:0,63,767 0/0:26,0:26:75.20:0,75,868 0/0:29,0:30:72.15:0,72,813 0/0:21,1:22:51.09:0,51,563 0/1:15,13:28:99:325,0,373 0/0:37,0:37:99:0,99,1155 0/0:81,0:82:99:0,220,2562 0/0:33,0:34:96.27:0,96,1133 0/0:23,0:23:66.14:0,66,738 0/0:22,0:22:60.16:0,60,687 0/0:35,0:35:93.16:0,93,1026 0/0:55,0:55:99:0,147,1792 0/0:33,0:33:90.25:0,90,1080 0/0:43,0:43:99:0,111,1333 0/0:63,0:63:99:0,187,2400 0/0:39,0:40:99:0,102,1293 0/0:41,0:42:99:0,108,1350 0/0:40,0:40:99:0,111,1356 0/0:18,0:18:45.14:0,45,549 0/0:30,0:30:81.15:0,81,894 0/0:25,0:25:63.18:0,63,754 0/0:27,0:27:78.22:0,78,925 0/0:32,0:32:84.20:0,84,977 0/0:50,0:50:99:0,117,1379 0/0:31,0:31:81.21:0,81,946 0/0:25,0:25:72.16:0,72,828 0/0:23,0:23:57.14:0,57,659 0/0:25,0:25:66.17:0,66,779 0/0:40,0:40:99:0,111,1315 0/0:31,0:31:90.22:0,90,1030 0/0:19,0:19:42.10:0,42,475 0/0:25,0:25:57.16:0,57,660 0/0:20,0:21:57.15:0,57,641 0/0:26,0:26:69.18:0,69,805 19 14029592 . C T 660.62 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.029;DP=2138;Dels=0.00;FS=0.696;HRun=1;HaplotypeScore=1.9734;InbreedingCoeff=-0.0120;MQ=58.25;MQ0=0;MQRankSum=0.991;QD=7.59;ReadPosRankSum=-0.475 GT:AD:DP:GQ:PL 0/0:22,0:22:63.18:0,63,737 0/0:24,0:24:66.17:0,66,754 0/0:23,0:23:60.16:0,60,694 0/0:133,0:133:99:0,370,4460 0/0:117,0:117:99:0,325,3960 0/0:98,0:98:99:0,262,3163 0/0:84,0:84:99:0,229,2693 0/0:101,0:101:99:0,271,3163 0/0:21,0:21:51.13:0,51,578 0/0:30,0:30:81.23:0,81,953 0/0:26,0:26:72.21:0,72,855 0/0:20,0:20:54.15:0,54,626 0/0:25,0:25:66.17:0,66,738 0/0:31,0:31:81.18:0,81,904 0/0:115,0:115:99:0,316,3594 0/0:29,0:29:78.21:0,78,868 0/0:25,0:25:69.19:0,69,786 0/0:20,0:20:57.13:0,57,633 0/0:72,1:73:99:0,137,1946 0/0:71,0:71:99:0,196,2253 0/0:61,0:61:99:0,144,1638 0/0:46,0:46:99:0,126,1443 0/0:157,0:157:99:0,424,5251 0/0:73,0:73:99:0,187,2268 0/1:54,33:87:99:707,0,1535 0/0:96,0:96:99:0,253,3194 0/0:23,0:23:63.18:0,63,733 0/0:30,0:30:81.20:0,81,920 0/0:21,0:21:57.16:0,57,660 0/0:27,0:27:78.19:0,78,879 0/0:29,0:29:81.20:0,81,932 0/0:89,0:90:99:0,223,2637 0/0:42,0:42:99:0,114,1284 0/0:20,0:20:57.16:0,57,666 0/0:26,0:26:69.18:0,69,796 0/0:33,0:33:87.24:0,87,1019 0/0:57,0:57:99:0,138,1597 0/0:26,0:26:69.19:0,69,810 0/0:30,0:30:81.20:0,81,894 0/0:23,0:23:66.19:0,66,783 0/0:26,0:26:66.18:0,66,746 0/0:27,0:27:72.18:0,72,828 19 14034243 . C T 1232.95 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.971;DP=2244;Dels=0.00;FS=1.146;HRun=0;HaplotypeScore=1.9306;InbreedingCoeff=-0.0244;MQ=58.93;MQ0=0;MQRankSum=0.266;QD=14.34;ReadPosRankSum=-0.261 GT:AD:DP:GQ:PL 0/0:28,0:28:72.22:0,72,883 0/0:41,0:41:99:0,108,1323 0/0:42,0:43:99:0,117,1440 0/0:132,0:132:99:0,346,4479 0/0:126,0:126:99:0,337,4418 0/0:78,0:78:99:0,211,2703 0/0:68,0:68:99:0,193,2478 0/0:81,0:81:99:0,217,2772 0/0:31,0:31:90.24:0,90,1054 0/0:28,2:30:33.47:0,33,849 0/0:41,0:41:99:0,114,1394 0/0:33,0:33:96.28:0,96,1161 0/0:19,0:19:51.16:0,51,645 0/0:31,0:31:90.28:0,90,1111 0/0:110,0:110:99:0,295,3613 0/0:40,0:40:99:0,111,1343 0/0:38,0:38:96.29:0,96,1188 0/0:31,0:31:81.24:0,81,984 0/0:61,0:61:99:0,156,1887 0/0:80,0:80:99:0,214,2619 0/0:63,0:63:99:0,174,2100 0/0:48,0:48:99:0,132,1579 0/0:139,0:139:99:0,370,4836 0/0:69,0:69:99:0,184,2368 0/0:84,0:84:99:0,223,2844 0/0:76,0:76:99:0,211,2735 0/0:33,0:33:90.25:0,90,1105 0/0:30,0:30:75.23:0,75,941 0/0:34,0:34:90.27:0,90,1111 0/1:23,23:46:99:666,0,638 0/0:32,0:32:93.28:0,93,1134 0/0:76,0:76:99:0,208,2603 0/1:17,23:40:99:629,0,465 0/0:37,0:37:99:0,105,1272 0/0:43,0:43:99:0,126,1568 0/0:32,0:32:87.25:0,87,1040 0/0:61,0:61:99:0,165,2000 0/0:38,0:38:99:0,114,1400 0/0:33,0:33:96.26:0,96,1156 0/0:30,0:30:87.23:0,87,1035 0/0:22,0:22:66.18:0,66,789 0/0:35,0:35:93.28:0,93,1124 19 14045074 . T G 91.84 . AC=5;AF=0.061;AN=82;BaseQRankSum=-2.475;DP=364;Dels=0.00;FS=33.373;HRun=2;HaplotypeScore=0.2502;InbreedingCoeff=-0.1050;MQ=57.86;MQ0=0;MQRankSum=0.727;QD=1.77;ReadPosRankSum=-2.846 GT:AD:DP:GQ:PL 0/0:2,1:3:6.01:0,6,62 0/0:5,1:6:15.03:0,15,159 0/0:5,0:5:15.04:0,15,170 0/0:14,3:17:33.05:0,33,352 0/1:13,6:19:60.40:60,0,237 0/0:7,2:9:9.02:0,9,101 0/0:12,4:16:33.07:0,33,355 0/0:9,4:13:1.56:4,0,173 0/0:6,4:10:12.04:0,12,150 0/0:3,0:3:9.02:0,9,102 0/0:5,0:5:9.02:0,9,95 0/0:5,2:7:15.03:0,15,162 0/1:7,1:8:19.52:20,0,94 0/0:2,1:3:6.02:0,6,68 0/0:21,4:25:45.08:0,45,475 0/0:5,1:6:15.04:0,15,167 0/0:5,0:5:12.02:0,12,122 0/0:6,1:7:12.01:0,12,119 0/0:5,1:6:12.03:0,12,128 0/0:13,2:15:33.05:0,33,359 0/0:7,4:11:15.03:0,15,155 0/1:5,1:6:16.62:17,0,81 0/0:13,0:13:21.05:0,21,224 0/0:9,2:11:24.04:0,24,249 0/0:7,4:11:15.04:0,15,164 0/1:3,4:7:35.34:35,0,93 0/0:2,3:5:6.02:0,6,68 0/0:5,0:5:12.03:0,12,133 0/0:6,1:7:15.04:0,15,170 0/0:6,0:6:12.02:0,12,125 ./. 0/0:7,2:9:15.03:0,15,157 0/0:7,0:7:15.02:0,15,162 0/0:7,2:9:15.05:0,15,187 0/0:6,2:8:12.03:0,12,137 0/1:8,4:12:52.41:52,0,222 0/0:9,0:9:21.03:0,21,223 0/0:2,1:3:6.02:0,6,68 0/0:7,0:7:18.03:0,18,186 0/0:4,2:6:9.02:0,9,99 0/0:6,1:7:9.02:0,9,106 0/0:7,1:8:18.03:0,18,189 19 14065341 . T C 12178.69 . AC=18;AF=0.214;AN=84;BaseQRankSum=17.678;DP=1705;Dels=0.00;FS=0.772;HRun=0;HaplotypeScore=2.0063;InbreedingCoeff=0.1515;MQ=58.87;MQ0=0;MQRankSum=0.438;QD=18.71;ReadPosRankSum=0.975 GT:AD:DP:GQ:PL 0/0:31,0:31:84.24:0,84,987 0/0:30,0:30:84.25:0,84,1008 0/0:30,0:30:84.23:0,84,970 0/1:36,22:58:99:660,0,1071 0/1:33,27:60:99:795,0,884 0/1:28,21:49:99:607,0,796 0/0:36,0:36:96.29:0,96,1175 0/1:29,20:49:99:556,0,842 0/1:18,17:35:99:527,0,486 0/0:53,0:53:99:0,147,1709 0/1:17,17:34:99:480,0,487 1/1:0,41:41:99:1506,123,0 0/1:23,16:39:99:479,0,614 0/1:14,11:25:99:326,0,371 0/0:108,0:108:99:0,316,3626 0/0:45,0:45:99:0,135,1535 0/0:40,1:41:84.21:0,84,1322 0/1:17,16:33:99:437,0,474 1/1:0,58:59:99:1948,162,0 1/1:0,56:56:99:1981,165,0 0/0:48,0:48:99:0,141,1669 0/0:40,0:40:99:0,114,1338 0/0:50,0:50:99:0,144,1654 0/0:38,0:38:99:0,102,1233 0/0:29,0:29:81.23:0,81,937 0/1:12,20:32:99:555,0,307 0/0:40,0:40:99:0,117,1357 0/0:30,0:30:84.23:0,84,966 0/0:33,0:33:96.28:0,96,1112 0/0:29,0:29:87.24:0,87,997 0/0:30,0:30:87.25:0,87,1018 0/0:41,0:41:99:0,108,1278 0/1:17,27:44:99:778,0,388 0/0:21,0:21:57.15:0,57,674 0/0:31,0:31:90.27:0,90,1065 0/0:39,0:39:99:0,114,1355 0/0:50,0:50:99:0,138,1676 0/1:19,18:37:99:543,0,527 0/0:37,0:37:99:0,111,1284 0/0:35,0:35:99:0,99,1158 0/0:30,0:30:84.25:0,84,976 0/0:29,0:29:84.23:0,84,979 19 14070704 . G A 13.46 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.528;DP=1857;Dels=0.00;FS=28.071;HRun=0;HaplotypeScore=2.1821;InbreedingCoeff=-0.0120;MQ=57.58;MQ0=0;MQRankSum=0.917;QD=0.56;ReadPosRankSum=-3.945 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,108,1344 0/0:42,0:42:99:0,117,1456 0/0:23,0:23:66.17:0,66,791 0/0:109,0:109:99:0,295,3878 0/0:90,0:90:99:0,244,3220 0/0:48,0:48:99:0,129,1725 0/0:25,0:25:69.23:0,69,929 0/0:58,0:58:99:0,150,1999 0/0:38,0:38:99:0,114,1435 0/0:24,0:24:72.21:0,72,879 0/0:32,0:32:90.28:0,90,1144 0/0:31,0:31:90.26:0,90,1085 0/0:22,0:23:63.20:0,63,799 0/1:20,4:24:59.47:59,0,659 0/0:83,0:84:99:0,226,2770 0/0:40,0:40:99:0,114,1414 0/0:43,0:43:99:0,129,1625 0/0:25,0:25:75.20:0,75,901 0/0:32,0:32:90.26:0,90,1089 0/0:43,0:43:99:0,111,1382 0/0:81,0:82:99:0,214,2705 0/0:45,0:45:99:0,126,1581 0/0:143,0:143:99:0,373,5138 0/0:32,0:32:96.28:0,96,1257 0/0:65,0:65:99:0,172,2316 0/0:37,0:37:99:0,102,1302 0/0:26,1:27:39.98:0,40,862 0/0:43,0:43:99:0,111,1434 0/0:31,1:32:52.92:0,53,1026 0/0:40,0:40:99:0,114,1414 0/0:24,0:24:69.22:0,69,897 0/0:78,0:78:99:0,211,2692 0/0:44,0:44:99:0,123,1558 0/0:44,0:44:99:0,129,1632 0/0:26,0:26:72.20:0,72,913 0/0:45,0:45:99:0,132,1661 0/0:39,0:40:99:0,105,1302 0/0:22,0:22:63.19:0,63,773 0/0:25,0:25:72.19:0,72,865 0/0:31,0:31:90.29:0,90,1137 0/0:31,0:31:90.29:0,90,1146 0/0:30,0:30:90.25:0,90,1096 19 14070706 . A AGGTGGGCCCAGGGCGGGCAG 24823.38 . AC=41;AF=0.488;AN=84;BaseQRankSum=3.911;DP=1856;FS=8.782;HRun=0;HaplotypeScore=609.9546;InbreedingCoeff=0.0954;MQ=56.89;MQ0=0;MQRankSum=-9.116;QD=20.25;ReadPosRankSum=-3.205 GT:AD:DP:GQ:PL 0/1:34,0:34:99:592,0,1020 0/1:41,0:41:99:611,0,642 0/0:21,0:21:12.04:0,12,336 0/1:111,0:112:99:2011,0,4020 0/1:84,2:87:99:988,0,3487 0/1:45,0:45:99:250,0,1251 1/1:22,2:25:12.01:178,12,0 0/1:56,2:56:99:872,0,1881 0/0:34,0:34:39.13:0,39,1825 0/1:27,0:27:99:626,0,975 0/1:34,0:34:99:622,0,945 1/1:30,0:30:21.06:867,21,0 1/1:26,0:26:18.06:699,18,0 1/1:30,0:30:37.37:1491,37,0 1/1:78,0:79:57.16:2806,57,0 0/1:41,0:41:99:389,0,867 0/1:42,0:42:99:640,0,628 1/1:29,0:29:21.06:1555,21,0 1/1:39,0:41:31.35:1258,31,0 1/1:51,0:51:28.33:1650,28,0 0/0:77,0:77:81.22:0,81,3187 0/1:47,0:47:99:1556,0,1360 0/0:142,0:142:99:0,202,8723 0/1:31,1:33:99:297,0,1187 0/0:57,0:56:84.28:0,84,3642 1/1:32,3:34:28.34:1491,28,0 0/1:27,0:27:99:335,0,450 0/0:42,0:42:36.12:0,36,1410 0/1:29,0:29:99:188,0,1374 0/0:40,0:40:42.14:0,42,1614 0/1:25,0:25:99:183,0,977 0/0:77,0:77:99:0,117,5275 0/1:44,1:47:99:447,0,1386 0/0:42,0:42:30.10:0,30,1206 0/0:25,0:25:36.12:0,36,1454 0/0:43,0:43:30.10:0,30,1289 1/1:39,1:40:21.44:1111,21,0 1/1:21,0:21:12.02:278,12,0 0/1:23,0:22:4.90:5,0,978 0/1:32,0:32:99:246,0,682 0/0:30,0:30:39.13:0,39,1638 0/1:31,0:31:99:585,0,740 19 14074441 . C T 74.20 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.212;DP=356;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3715;InbreedingCoeff=-0.0259;MQ=58.06;MQ0=0;MQRankSum=0.147;QD=6.75;ReadPosRankSum=-0.610 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,184 0/0:4,0:4:12.03:0,12,135 0/0:5,0:5:15.04:0,15,179 0/0:21,0:21:60.16:0,60,699 0/0:13,0:13:33.10:0,33,385 0/0:12,0:12:33.06:0,33,357 0/0:12,0:12:33.09:0,33,380 0/0:17,0:17:45.12:0,45,526 0/0:11,0:11:27.07:0,27,306 0/0:13,0:13:39.10:0,39,451 0/0:6,0:6:18.05:0,18,218 0/0:4,0:4:12.03:0,12,139 0/0:4,0:4:12.03:0,12,139 0/0:3,0:3:9.03:0,9,111 0/0:22,0:22:63.16:0,63,722 0/1:7,4:11:99:120,0,179 0/0:9,0:9:21.06:0,21,242 0/0:4,0:4:9.02:0,9,98 0/0:6,0:6:15.03:0,15,158 0/0:11,0:11:30.07:0,30,333 0/0:4,0:4:9.03:0,9,106 0/0:10,0:10:30.09:0,30,358 0/0:15,0:15:36.11:0,36,452 0/0:11,0:11:30.07:0,30,347 0/0:11,0:11:27.04:0,27,303 0/0:6,0:6:15.04:0,15,183 0/0:5,0:5:15.04:0,15,164 0/0:7,0:7:21.06:0,21,234 0/0:9,0:9:27.08:0,27,321 0/0:5,0:5:15.04:0,15,173 0/0:8,0:8:15.04:0,15,168 0/0:10,0:10:27.06:0,27,301 0/0:8,0:8:24.05:0,24,257 0/0:9,0:9:27.04:0,27,284 0/0:4,0:4:12.03:0,12,130 0/0:4,0:4:12.03:0,12,135 0/0:5,0:5:12.03:0,12,142 0/0:6,0:6:15.02:0,15,164 0/0:4,0:4:12.04:0,12,142 0/0:5,0:5:12.03:0,12,135 0/0:7,0:7:18.02:0,18,194 0/0:10,0:10:24.08:0,24,312 19 14074506 . T C 47.86 . AC=6;AF=0.071;AN=84;BaseQRankSum=-7.216;DP=353;Dels=0.00;FS=53.586;HRun=2;HaplotypeScore=0.1765;InbreedingCoeff=-0.1290;MQ=58.25;MQ0=0;MQRankSum=1.183;QD=0.85;ReadPosRankSum=-5.302 GT:AD:DP:GQ:PL 0/0:4,1:5:12.03:0,12,139 0/0:3,0:3:6.02:0,6,71 0/0:5,1:6:15.05:0,15,188 0/0:13,8:21:6.48:0,6,377 0/0:13,7:20:19.44:0,19,470 0/0:12,2:14:30.08:0,30,360 0/0:7,3:10:18.06:0,18,238 0/0:5,4:9:12.04:0,12,146 0/1:2,2:4:20.60:21,0,67 0/0:8,0:8:24.04:0,24,262 0/0:2,2:4:3.01:0,3,39 0/0:6,0:6:9.03:0,9,112 0/0:2,1:3:6:0,6,56 0/0:5,1:6:15.03:0,15,162 0/1:14,9:23:54.24:54,0,378 0/0:5,1:7:12.04:0,12,151 0/0:6,2:8:15.04:0,15,167 0/0:2,1:3:6.02:0,6,68 0/0:4,1:5:9.02:0,9,100 0/0:9,1:10:24.07:0,24,295 0/1:7,3:10:13.29:13,0,190 0/0:10,2:12:0.37:0,0,227 0/0:11,10:21:10.12:0,10,338 0/1:1,6:7:17.68:18,0,33 0/0:10,1:11:27.07:0,27,318 0/0:4,1:5:9.03:0,9,120 0/0:3,2:5:9.03:0,9,102 0/0:7,0:7:15.05:0,15,184 0/1:2,3:5:21.57:22,0,66 0/0:6,1:7:18.05:0,18,210 0/1:5,2:7:18.56:19,0,95 0/0:7,1:9:21.07:0,21,265 0/0:8,2:10:21.05:0,21,234 0/0:5,1:6:14.71:0,15,145 0/0:4,2:6:9.03:0,9,115 0/0:5,1:6:0.85:7,0,164 0/0:9,3:12:27.08:0,27,334 0/0:6,1:7:18.02:0,18,193 0/0:7,2:9:15.05:0,15,183 0/0:4,0:4:12.04:0,12,148 0/0:8,0:8:18.06:0,18,218 0/0:3,1:4:9.02:0,9,102 19 14074787 . C T 47.52 . AC=1;AF=0.013;AN=80;BaseQRankSum=-2.293;DP=147;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0591;InbreedingCoeff=-0.0767;MQ=58.70;MQ0=0;MQRankSum=1.179;QD=9.50;ReadPosRankSum=-1.807 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,190 0/0:6,0:6:18.06:0,18,226 0/0:1,0:1:3.01:0,3,37 0/0:4,0:4:9.03:0,9,114 0/0:3,0:3:9.03:0,9,116 0/0:4,0:4:9.03:0,9,118 0/0:2,0:2:6.02:0,6,77 0/0:1,0:1:3.01:0,3,42 0/0:5,0:5:15.05:0,15,191 0/0:5,0:5:15.05:0,15,192 0/0:2,0:2:5.99:0,6,59 0/0:4,0:4:9.03:0,9,112 0/0:4,0:4:12.04:0,12,143 0/0:3,0:3:9.03:0,9,113 0/0:9,0:9:27.08:0,27,334 0/0:4,0:4:9.03:0,9,107 0/0:2,0:2:6.02:0,6,73 0/0:3,0:3:9.03:0,9,115 0/0:3,0:3:9.03:0,9,111 0/0:5,0:5:12.04:0,12,146 0/0:5,0:5:15.05:0,15,183 0/0:1,0:1:3.01:0,3,35 0/0:4,0:4:12.04:0,12,160 ./. 0/0:4,0:4:12.04:0,12,155 0/0:3,0:3:9.03:0,9,115 0/1:1,3:5:26.54:93,0,27 0/0:3,0:3:9.03:0,9,115 0/0:3,0:3:9.03:0,9,108 ./. 0/0:2,0:2:6.02:0,6,67 0/0:6,0:6:18.06:0,18,234 0/0:1,0:1:3.01:0,3,39 0/0:7,0:7:21.07:0,21,267 0/0:2,0:2:6.02:0,6,77 0/0:5,0:5:15.05:0,15,190 0/0:8,0:8:21.01:0,21,224 0/0:3,0:3:9.03:0,9,116 0/0:2,0:2:6.02:0,6,75 0/0:2,0:2:6.02:0,6,73 0/0:4,0:4:12.04:0,12,151 0/0:2,0:2:6.02:0,6,75 19 14088827 . A G 665.56 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.352;DP=3740;Dels=0.00;FS=0.698;HRun=0;HaplotypeScore=3.3182;InbreedingCoeff=-0.0120;MQ=59.19;MQ0=0;MQRankSum=0.404;QD=10.40;ReadPosRankSum=-1.354 GT:AD:DP:GQ:PL 0/1:34,30:64:99:712,0,845 0/0:61,0:61:99:0,162,1897 0/0:56,0:57:99:0,150,1805 0/0:207,0:207:99:0,542,6490 0/0:189,1:191:99:0,468,6024 0/0:125,0:125:99:0,307,3819 0/0:117,0:117:99:0,310,3768 0/0:137,0:138:99:0,358,4316 0/0:61,0:61:99:0,150,1791 0/0:63,0:65:99:0,178,2086 0/0:56,0:56:99:0,156,1839 0/0:60,0:60:99:0,159,1913 0/0:50,0:52:99:0,129,1530 0/0:75,0:76:99:0,196,2336 0/0:211,0:213:99:0,523,6177 0/0:55,0:56:99:0,141,1703 0/0:74,0:74:99:0,199,2341 0/0:62,0:62:99:0,165,1960 0/0:82,1:84:99:0,214,2567 0/0:166,0:167:99:0,427,5148 0/0:121,1:123:99:0,313,3706 0/0:73,1:74:99:0,193,2309 0/0:186,0:186:99:0,481,5868 0/0:96,0:96:99:0,229,2877 0/0:134,0:134:99:0,322,3962 0/0:79,1:80:99:0,220,2659 0/0:35,0:36:93.27:0,93,1107 0/0:68,0:69:99:0,181,2159 0/0:47,0:47:99:0,120,1458 0/0:51,0:51:99:0,141,1674 0/0:61,0:62:99:0,159,1926 0/0:130,0:131:99:0,328,3943 0/0:105,0:107:99:0,256,3091 0/0:49,0:49:99:0,138,1650 0/0:46,0:46:99:0,129,1552 0/0:49,0:50:99:0,129,1557 0/0:115,1:118:99:0,298,3540 0/0:50,0:50:99:0,126,1506 0/0:70,1:71:99:0,193,2274 0/0:60,0:60:99:0,168,2004 0/0:58,1:60:99:0,159,1856 0/0:54,0:54:99:0,147,1776 19 14090281 . T TG 109.77 . AC=6;AF=0.071;AN=84;BaseQRankSum=11.287;DP=3352;DS;FS=893.949;HRun=2;HaplotypeScore=250.5770;InbreedingCoeff=-0.0945;MQ=57.55;MQ0=0;MQRankSum=0.757;QD=0.54;ReadPosRankSum=-10.490 GT:AD:DP:GQ:PL 0/0:44,0:44:42.05:0,42,849 0/0:44,0:44:11.31:0,11,824 0/0:37,0:37:43.86:0,44,523 0/0:246,1:247:99:0,257,4422 0/0:222,0:221:99:0,109,3710 0/0:168,0:167:99:0,167,3119 0/0:126,1:126:20.04:0,20,2053 0/0:154,0:148:99:0,158,2682 0/0:40,0:40:0.63:8,0,546 0/0:47,0:47:30.83:0,31,891 0/0:40,0:40:51.27:0,51,738 0/0:36,0:36:63.04:0,63,755 0/1:33,1:34:40.72:41,0,382 0/1:39,0:39:11.41:11,0,682 0/0:149,0:149:99:0,173,2827 0/0:46,1:47:49.22:0,49,836 0/1:38,0:38:34.99:35,0,568 0/0:38,0:38:59.12:0,59,782 0/0:89,0:89:34.39:0,34,1480 0/0:143,0:143:99:0,187,2804 0/0:79,0:78:35.79:0,36,1492 0/0:71,0:71:39.44:0,39,1207 0/0:234,0:234:99:0,122,3731 0/0:115,0:114:99:0,194,2147 0/0:184,1:182:99:0,223,3588 0/0:124,0:124:99:0,181,2328 0/0:41,0:41:27.33:0,27,796 0/0:50,1:51:15.80:0,16,705 0/1:32,1:33:43.97:44,0,467 0/0:45,0:45:61.78:0,62,841 0/0:30,0:30:29.73:0,30,554 0/0:93,0:93:99:0,129,1595 0/0:59,0:59:78.02:0,78,988 0/1:27,13:40:41.14:41,0,567 0/0:37,0:37:8.46:0,8,684 0/0:48,0:48:73.84:0,74,967 0/0:96,0:96:5.50:0,6,1547 0/0:37,0:37:51.18:0,51,613 0/0:44,0:44:41.47:0,41,877 0/0:35,0:35:27.94:0,28,588 0/1:21,0:21:47.15:47,0,288 0/0:51,0:51:44.04:0,44,928 19 14090284 . A G 8062.50 . AC=41;AF=0.488;AN=84;BaseQRankSum=-30.861;DP=3022;DS;Dels=0.00;FS=3200.000;HRun=2;HaplotypeScore=2.7825;InbreedingCoeff=-0.9500;MQ=58.37;MQ0=0;MQRankSum=-1.304;QD=2.71;ReadPosRankSum=-28.641 GT:AD:DP:GQ:PL 0/1:20,20:40:99:157,0,591 0/1:28,11:39:62.54:63,0,831 0/1:13,20:33:93.12:93,0,334 0/1:116,109:226:99:801,0,3298 0/1:104,94:198:99:614,0,2835 0/1:76,82:158:99:345,0,2093 0/1:57,62:119:99:174,0,1391 0/1:73,68:141:99:145,0,1939 0/1:17,18:35:99:226,0,481 0/1:23,20:43:99:207,0,671 0/1:18,18:36:99:120,0,530 0/1:19,13:32:99:108,0,490 0/1:15,14:29:99:226,0,296 0/1:19,18:37:99:111,0,521 0/1:80,52:132:99:338,0,2264 0/1:25,16:41:99:142,0,664 0/1:19,18:37:99:261,0,548 0/1:21,13:34:90.18:90,0,651 0/1:47,32:79:99:115,0,1262 0/1:78,52:130:50.79:51,0,2082 0/1:43,26:69:60.16:60,0,1245 0/1:32,34:66:99:227,0,876 0/1:105,111:216:99:878,0,2907 0/1:57,46:103:99:113,0,1583 0/1:94,75:170:99:255,0,2343 0/1:67,46:113:99:120,0,1814 0/1:24,14:38:57.67:58,0,646 0/1:19,24:43:99:190,0,507 0/1:18,14:32:99:129,0,381 0/0:24,18:43:38.41:0,38,744 0/1:19,10:29:61.83:62,0,548 0/1:41,37:78:99:315,0,1206 0/1:28,23:51:99:209,0,768 0/1:17,14:31:99:172,0,547 0/1:20,12:32:53.81:54,0,493 0/1:29,14:43:99:114,0,809 0/1:46,35:81:99:308,0,1403 0/1:17,9:26:44.79:45,0,486 0/1:26,14:41:10.75:11,0,711 0/1:18,15:33:99:144,0,513 0/1:13,6:19:59.71:60,0,299 0/1:25,20:46:99:152,0,771 19 14153293 . T C 15872.42 . AC=11;AF=0.131;AN=84;BaseQRankSum=-5.558;DP=5410;DS;Dels=0.00;FS=5.900;HRun=4;HaplotypeScore=5.9763;InbreedingCoeff=0.0585;MQ=58.68;MQ0=0;MQRankSum=2.579;QD=14.00;ReadPosRankSum=-0.116 GT:AD:DP:GQ:PL 0/1:57,43:101:99:1049,0,1739 0/0:116,0:116:99:0,319,3915 0/0:106,0:106:99:0,304,3660 0/0:107,0:107:99:0,289,3468 0/0:134,0:136:99:0,391,4613 0/0:158,0:159:99:0,445,5564 0/0:158,0:158:99:0,454,5461 0/0:175,0:176:99:0,481,5884 0/0:102,0:102:99:0,283,3433 0/0:99,0:99:99:0,265,3248 0/0:106,1:107:99:0,259,3499 0/0:111,0:111:99:0,313,3838 0/0:92,0:92:99:0,250,3070 0/0:104,0:104:99:0,304,3733 0/0:217,0:218:99:0,614,7390 0/0:103,0:103:99:0,286,3460 0/0:108,0:108:99:0,310,3813 0/0:86,0:86:99:0,256,3092 0/0:192,1:193:99:0,524,6437 0/0:215,0:217:99:0,578,7039 0/1:94,88:182:99:2373,0,2722 0/0:156,0:156:99:0,430,5219 0/0:139,1:140:99:0,378,4855 0/0:188,0:190:99:0,493,6083 0/0:143,1:145:99:0,391,4731 0/0:168,0:168:99:0,454,5575 0/1:44,46:90:99:1305,0,1245 1/1:0,76:76:99:2476,214,0 0/1:42,60:102:99:1781,0,1136 0/0:104,0:105:99:0,280,3361 0/0:88,0:88:99:0,253,3110 0/1:120,93:213:99:2346,0,3183 0/0:155,0:157:99:0,424,5124 0/1:48,49:97:99:1408,0,1336 0/0:111,0:112:99:0,316,3900 0/1:50,44:94:99:1175,0,1495 0/0:197,2:200:99:0,533,6567 0/0:118,0:118:99:0,334,4063 0/0:83,0:83:99:0,238,2870 0/1:66,43:109:99:1098,0,1932 0/1:37,33:70:99:863,0,1127 0/0:116,0:116:99:0,337,4117 19 14217610 . CGGTCT C 261.84 . AC=8;AF=0.095;AN=84;BaseQRankSum=-10.796;DP=3548;DS;FS=1720.154;HRun=0;HaplotypeScore=400.2778;InbreedingCoeff=-0.1328;MQ=58.85;MQ0=0;MQRankSum=2.130;QD=0.42;ReadPosRankSum=-21.603 GT:AD:DP:GQ:PL 0/0:51,0:51:37.11:0,37,3553 0/0:57,0:57:86.84:0,87,4112 0/0:59,0:59:73.02:0,73,4445 0/0:188,0:188:99:0,394,14920 0/0:191,0:191:99:0,204,15912 0/0:138,0:132:99:0,215,11202 0/0:108,0:107:99:0,244,8516 0/0:120,0:113:99:0,127,8867 0/0:59,0:59:98.95:0,99,4691 0/1:52,0:52:24.22:24,0,3344 0/0:47,0:47:81.55:0,82,3437 0/0:64,0:64:50.67:0,51,5042 0/0:52,0:52:55.20:0,55,4145 0/0:64,0:64:2.23:2,0,4212 0/1:219,0:219:49.38:49,0,15171 0/0:75,0:75:99:0,102,5576 0/0:61,0:61:9.18:0,9,4062 0/1:40,0:40:25.41:25,0,2643 0/0:77,17:94:1.38:0,1,6777 0/0:108,0:108:2.21:2,0,6697 0/0:90,0:90:48.33:0,48,6881 0/0:58,0:58:39.38:0,39,4500 0/0:208,0:208:99:0,281,16817 0/0:112,0:110:99:0,139,8145 0/0:127,0:124:99:0,311,10607 0/0:97,0:96:99:0,128,7736 0/0:54,0:54:38.97:0,39,3968 0/0:42,0:42:11.63:0,12,2874 0/1:49,0:49:13.60:14,0,3531 0/0:71,0:71:52.86:0,53,5109 0/0:77,0:77:28.28:0,28,5645 0/0:111,0:111:46.39:0,46,7363 0/0:65,0:64:36.94:0,37,4116 0/0:43,12:55:27.04:0,27,3854 0/0:69,0:69:12.97:0,13,4455 0/1:58,0:58:34.58:35,0,3649 0/1:92,0:92:99:193,0,5988 0/1:60,0:60:17.96:18,0,3618 0/0:52,10:62:63.23:0,63,4546 0/1:47,0:47:29.81:30,0,3291 0/0:42,0:42:93.30:0,93,2936 0/0:55,0:54:11.38:0,11,3569 19 14217611 . G C 331.21 . AC=9;AF=0.107;AN=84;BaseQRankSum=-12.790;DP=3548;DS;Dels=0.01;FS=1715.387;HRun=3;HaplotypeScore=6.7054;InbreedingCoeff=-0.1473;MQ=58.85;MQ0=0;MQRankSum=1.581;QD=0.57;ReadPosRankSum=-20.372 GT:AD:DP:GQ:PL 0/0:39,12:51:11.34:0,11,1176 0/0:46,11:57:99:0,121,1439 0/0:48,11:59:38.08:0,38,1439 0/0:160,28:188:99:0,362,5805 0/0:168,23:191:99:0,244,5907 0/0:121,17:138:99:0,167,4161 0/0:92,16:108:99:0,258,3273 0/0:98,22:120:99:0,140,3309 0/0:51,8:59:99:0,108,1694 0/0:36,16:52:38.47:0,38,1112 0/0:37,9:47:46.35:0,46,1242 0/0:53,10:64:47.71:0,48,1780 0/0:44,8:52:56.54:0,57,1372 0/0:49,15:64:2.09:0,2,1502 0/0:169,49:219:55.65:0,56,5054 0/0:59,16:75:99:0,102,1893 0/1:46,15:61:57.46:57,0,1348 0/1:29,11:40:52.48:52,0,904 0/0:73,1:77:99:0,205,2490 0/1:75,33:108:91.94:92,0,2228 0/0:73,17:90:95.43:0,95,2283 0/0:48,10:58:11.96:0,12,1513 0/0:183,25:208:99:0,221,6361 0/0:89,23:112:99:0,153,3044 0/0:112,15:127:99:0,280,4031 0/0:81,15:97:99:0,198,2942 0/0:45,9:54:5.31:0,5,1366 0/0:33,9:42:0.50:0,1,998 0/1:38,10:49:51.68:52,0,1155 0/0:57,14:71:1.32:5,0,1739 0/0:62,15:77:21.60:0,22,1955 0/0:86,25:111:52.01:0,52,2495 0/0:45,20:65:12.23:0,12,1404 0/0:42,1:43:99:0,120,1466 0/1:54,15:69:24.72:25,0,1540 0/1:43,15:58:5.22:5,0,1342 0/1:67,24:92:99:118,0,1962 0/0:43,17:60:16.93:0,17,1217 0/0:48,4:52:99:0,129,1616 0/1:36,11:47:30.56:31,0,1085 0/0:31,11:42:84.22:0,84,1014 0/1:40,15:55:18.94:19,0,1190 19 14266312 . C T 397.38 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.300;DP=2833;Dels=0.00;FS=4.636;HRun=0;HaplotypeScore=2.0834;InbreedingCoeff=-0.0120;MQ=59.25;MQ0=0;MQRankSum=0.706;QD=8.28;ReadPosRankSum=1.080 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,111,1401 0/0:51,0:51:99:0,138,1746 0/0:41,0:41:99:0,117,1470 0/0:157,0:157:99:0,418,5602 0/0:119,0:119:99:0,334,4514 0/0:79,0:80:99:0,223,3010 0/0:87,0:87:99:0,247,3334 0/0:90,1:91:99:0,225,3344 0/0:43,0:43:99:0,129,1607 0/0:30,0:31:81.22:0,81,1010 0/1:31,17:48:99:444,0,1026 0/0:44,0:44:99:0,129,1645 0/0:40,0:40:99:0,117,1484 0/0:42,0:42:99:0,120,1512 0/0:144,0:145:99:0,397,5031 0/0:38,0:40:99:0,111,1400 0/0:53,0:53:99:0,156,1943 0/0:45,0:45:99:0,129,1613 0/0:95,0:95:99:0,256,3244 0/0:118,0:118:99:0,334,4247 0/0:87,0:88:99:0,247,3112 0/0:69,0:69:99:0,202,2517 0/0:155,0:155:99:0,436,5941 0/0:86,0:86:99:0,244,3306 0/0:89,1:90:99:0,215,3325 0/0:85,0:85:99:0,241,3245 0/0:32,0:32:96.31:0,96,1225 0/0:40,0:40:99:0,117,1482 0/0:35,0:35:99:0,102,1289 0/0:53,0:53:99:0,156,1973 0/0:44,0:44:99:0,123,1571 0/0:117,0:117:99:0,328,4178 0/0:63,0:63:99:0,181,2280 0/0:37,0:37:99:0,111,1390 0/0:50,0:50:99:0,144,1816 0/0:46,0:46:99:0,129,1628 0/0:104,0:104:99:0,292,3693 0/0:55,0:55:99:0,156,1954 0/0:50,0:50:99:0,144,1811 0/0:38,0:38:99:0,114,1420 0/0:40,0:40:99:0,111,1420 0/0:46,0:46:99:0,138,1692 19 14281564 . C T 179.42 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.493;DP=1010;Dels=0.00;FS=3.191;HRun=0;HaplotypeScore=1.1637;InbreedingCoeff=-0.0123;MQ=58.60;MQ0=0;MQRankSum=0.099;QD=6.90;ReadPosRankSum=-1.153 GT:AD:DP:GQ:PL 0/0:14,0:14:27.06:0,27,287 0/0:9,0:9:24.07:0,24,282 0/0:18,0:18:48.11:0,48,526 0/0:49,0:49:99:0,99,1211 0/0:41,0:44:69.15:0,69,805 0/0:28,0:29:66.14:0,66,748 0/0:28,0:29:60.11:0,60,700 0/0:24,0:24:48.12:0,48,590 0/0:17,0:18:45.09:0,45,491 0/0:15,0:17:36.07:0,36,389 0/1:17,8:26:99:226,0,336 0/0:17,0:19:30.08:0,30,369 0/0:13,0:13:30.05:0,30,329 0/0:13,0:14:30.07:0,30,335 0/0:69,0:76:99:0,138,1573 0/0:21,1:23:39.10:0,39,468 0/0:21,0:23:48.12:0,48,541 0/0:19,0:22:36.07:0,36,382 0/0:23,0:25:57.13:0,57,636 0/0:24,0:26:57.13:0,57,672 0/0:15,0:17:39.11:0,39,458 0/0:17,0:21:39.07:0,39,416 0/0:49,0:52:99:0,108,1315 0/0:19,0:19:42.10:0,42,499 0/0:23,0:23:54.08:0,54,627 0/0:25,0:25:54.12:0,54,624 0/0:15,0:16:36.10:0,36,434 0/0:18,0:18:45.10:0,45,503 0/0:22,0:23:57.15:0,57,665 0/0:36,0:37:63.07:0,63,678 0/0:15,0:17:27.04:0,27,290 0/0:35,0:36:84.20:0,84,972 0/0:29,0:29:75.13:0,75,826 0/0:16,0:16:24.05:0,24,266 0/0:11,0:12:30.08:0,30,339 0/0:20,0:22:42.07:0,42,471 0/0:27,0:28:60.17:0,60,697 0/0:18,0:18:42.07:0,42,444 0/0:14,0:14:30.09:0,30,353 0/0:12,0:14:27.06:0,27,291 0/0:17,0:18:33.09:0,33,411 0/0:16,0:17:42.10:0,42,476 19 14507215 . CCTTGGCAGCTATA C 67.93 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.092;DP=3197;DS;FS=110.856;HRun=0;HaplotypeScore=674.6764;InbreedingCoeff=-0.0120;MQ=51.20;MQ0=79;MQRankSum=-2.294;QD=0.70;ReadPosRankSum=-10.042 GT:AD:DP:GQ:PL 0/0:44,0:43:90.35:0,90,5481 0/0:55,0:52:99:0,153,5928 0/0:76,0:71:99:0,192,8436 0/0:108,0:89:99:0,247,10852 0/0:68,0:64:99:0,181,8619 0/0:79,0:68:99:0,202,9414 0/0:53,0:49:99:0,108,5967 0/0:82,0:75:99:0,208,8335 0/0:76,0:72:99:0,211,10277 0/0:53,0:49:99:0,141,5956 0/0:68,0:65:99:0,172,7985 0/0:79,0:70:99:0,202,8985 0/1:70,27:90:99:123,0,8021 0/0:83,0:75:99:0,182,9237 0/0:202,0:190:99:0,472,26467 0/0:53,0:50:99:0,141,6468 0/0:78,0:73:99:0,140,7449 0/0:54,0:53:99:0,150,6145 0/0:79,0:73:99:0,182,7913 0/0:126,0:122:99:0,316,16348 0/0:118,0:106:99:0,291,11889 0/0:85,0:76:99:0,211,8449 0/0:113,0:99:99:0,235,12610 0/0:53,0:50:81.65:0,82,6209 0/0:92,0:82:99:0,116,8747 0/0:66,0:63:99:0,175,7897 0/0:33,0:31:93.31:0,93,4538 0/0:66,0:62:99:0,165,6441 0/0:48,0:44:99:0,132,6434 0/0:47,0:47:99:0,138,6235 0/0:54,0:50:99:0,135,5515 0/0:112,0:108:99:0,231,12580 0/0:59,0:57:99:0,138,6928 0/0:61,0:55:99:0,150,6026 0/0:78,0:74:99:0,192,8083 0/0:72,0:67:99:0,192,8568 0/0:108,0:93:99:0,262,11274 0/0:62,0:57:99:0,166,6638 0/0:77,0:69:99:0,187,7255 0/0:69,0:62:99:0,172,7673 0/0:46,0:44:99:0,123,5355 0/0:65,0:61:99:0,175,8486 19 14507228 . A C 11424.45 . AC=39;AF=0.464;AN=84;BaseQRankSum=-0.282;DP=3598;DS;Dels=0.01;FS=2068.655;HRun=2;HaplotypeScore=9.1783;InbreedingCoeff=-0.8667;MQ=52.04;MQ0=113;MQRankSum=-3.160;QD=3.43;ReadPosRankSum=-23.555 GT:AD:DP:GQ:PL 0/1:26,28:54:99:278,0,718 0/1:25,34:60:99:361,0,635 0/1:37,53:90:99:234,0,855 0/1:60,60:120:99:402,0,1305 0/1:38,34:73:99:217,0,1105 0/1:50,51:101:99:159,0,1294 0/0:29,25:54:52.46:0,52,890 0/1:37,49:86:99:218,0,887 0/1:50,35:85:99:188,0,1387 0/1:29,28:57:99:214,0,644 0/1:44,34:78:99:263,0,1118 0/1:46,36:82:99:221,0,1086 0/0:45,13:58:99:0,117,1290 0/1:50,52:102:99:608,0,1134 0/1:114,136:250:99:1313,0,2602 0/1:34,35:70:99:243,0,837 0/1:36,42:78:99:158,0,867 0/1:29,38:67:99:244,0,803 0/1:35,40:75:99:300,0,973 0/0:76,55:131:99:0,105,2337 0/1:62,68:131:99:563,0,1469 0/1:43,63:106:99:238,0,1033 0/1:67,62:129:99:485,0,1628 0/1:30,46:76:99:99,0,790 0/1:48,61:109:99:331,0,1119 0/1:32,34:66:99:158,0,903 0/1:21,22:43:99:178,0,610 0/1:29,26:55:99:238,0,731 0/1:31,19:50:96.34:96,0,863 0/1:27,18:45:85.70:86,0,742 0/1:27,31:58:99:345,0,718 0/1:59,55:114:99:321,0,1533 0/1:31,35:66:99:127,0,907 0/1:31,39:70:99:296,0,710 0/1:42,30:72:99:158,0,1084 0/1:46,42:89:99:295,0,1125 0/1:56,68:124:99:480,0,1387 0/1:30,51:81:99:225,0,775 0/1:39,53:92:99:354,0,788 0/1:38,42:81:99:323,0,908 0/1:26,23:49:99:181,0,593 0/1:48,45:93:99:226,0,1273 19 14508510 . C T 278.82 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.973;DP=3439;Dels=0.00;FS=40.058;HRun=1;HaplotypeScore=0.3368;InbreedingCoeff=-0.0284;MQ=12.03;MQ0=2801;MQRankSum=0.729;QD=2.08;ReadPosRankSum=0.093 GT:AD:DP:GQ:PL 0/0:64,0:64:24.03:0,24,248 0/0:59,0:60:15.02:0,15,152 0/0:60,0:60:12:0,12,107 0/0:176,0:176:99:0,126,1404 0/0:137,0:137:99:0,114,1210 0/0:110,0:110:36.04:0,36,358 0/0:82,0:83:36.06:0,36,383 0/0:99,0:99:36.04:0,36,361 0/0:73,0:73:33.07:0,33,366 0/0:64,0:64:54.09:0,54,566 0/0:45,0:47:12.01:0,12,119 0/0:61,0:61:12.01:0,12,113 0/0:42,0:42:18.03:0,18,194 0/0:55,0:55:18.02:0,18,184 0/0:218,1:221:99:0,99,1016 0/0:79,0:79:54.10:0,54,561 0/0:60,0:61:21.01:0,21,193 0/0:68,0:68:51.11:0,51,553 0/0:85,0:88:45.08:0,45,484 0/0:106,0:106:66.08:0,66,667 0/0:99,0:100:30.05:0,30,317 0/0:77,0:78:24.04:0,24,260 0/0:185,0:186:99:0,126,1313 0/0:75,0:75:18.02:0,18,185 0/0:106,0:106:33.04:0,33,333 0/0:71,0:71:33.04:0,33,331 0/0:45,0:45:27.07:0,27,306 0/0:63,0:63:39.10:0,39,436 0/0:65,0:65:48.10:0,48,519 0/0:62,0:62:30.05:0,30,323 0/0:51,0:51:21.03:0,21,219 0/0:100,0:100:51.08:0,51,529 0/0:71,0:71:24.03:0,24,236 0/0:51,0:52:30.07:0,30,337 0/0:50,0:50:18.05:0,18,219 0/0:71,0:71:42.06:0,42,432 0/0:108,0:108:63.10:0,63,664 0/0:73,0:73:18.03:0,18,188 0/0:70,0:70:66.17:0,66,737 0/1:44,19:63:44.94:150,0,45 0/0:53,0:54:30.05:0,30,317 0/1:48,23:71:99:191,0,274 19 14508545 . G C 105.29 . AC=9;AF=0.107;AN=84;BaseQRankSum=-6.471;DP=3113;Dels=0.00;FS=53.945;HRun=1;HaplotypeScore=0.3600;InbreedingCoeff=-0.1662;MQ=11.09;MQ0=2565;MQRankSum=-1.274;QD=0.16;ReadPosRankSum=-4.106 GT:AD:DP:GQ:PL 0/1:41,11:52:17.67:51,0,18 0/0:44,15:59:3:0,3,27 0/0:37,15:52:3:0,3,27 0/0:149,36:185:99:0,102,1191 0/0:115,30:145:72.13:0,72,742 0/0:88,20:108:9:0,9,80 0/1:59,22:82:17.66:54,0,18 0/0:74,14:88:21.01:0,21,200 0/0:51,15:67:6.01:0,6,65 0/0:37,7:44:27.05:0,27,280 0/0:27,7:34:3.01:0,3,36 0/1:36,14:50:20.67:21,0,21 0/1:34,9:43:17.66:18,0,60 0/0:48,6:54:6:0,6,53 0/1:128,53:181:15.08:15,0,175 0/0:64,14:78:48.12:0,48,541 0/0:44,15:59:6.01:0,6,60 0/0:50,17:67:51.12:0,51,551 0/1:52,14:68:14.65:15,0,86 0/0:96,11:107:3.36:0,3,244 0/0:52,14:66:18.03:0,18,185 0/1:59,17:76:20.67:25,0,21 0/0:148,58:206:16.85:0,17,674 0/0:40,9:49:6.02:0,6,69 0/0:72,18:90:8.99:0,9,76 0/0:64,18:83:12.02:0,12,119 0/0:36,7:43:18.05:0,18,209 0/0:46,8:54:30.08:0,30,342 0/0:38,16:54:24.04:0,24,254 0/0:34,12:47:6:0,6,53 0/1:40,11:51:20.67:21,0,23 0/0:66,14:80:15.01:0,15,141 0/0:58,17:75:6:0,6,53 0/0:27,9:36:9.01:0,9,91 0/0:30,12:42:3.01:0,3,38 0/0:43,16:59:15.03:0,15,159 0/0:67,10:77:30.09:0,30,344 0/0:46,10:56:3:0,3,27 0/0:53,14:67:6.06:0,6,604 0/1:54,11:65:2.73:0,1,301 0/0:41,12:53:3:0,3,27 0/0:54,7:61:39.09:0,39,430 19 14578707 . G A 1911.84 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.935;DP=2228;Dels=0.00;FS=2.114;HRun=0;HaplotypeScore=1.3338;InbreedingCoeff=0.6540;MQ=58.56;MQ0=0;MQRankSum=1.315;QD=26.55;ReadPosRankSum=-1.831 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,105,1260 0/0:37,0:37:99:0,102,1194 0/0:24,1:25:29.21:0,29,731 0/0:126,0:126:99:0,295,3792 0/0:101,0:101:99:0,253,3160 0/0:66,1:68:99:0,141,2115 0/0:62,0:62:99:0,165,2084 0/0:71,0:71:99:0,193,2371 0/0:38,0:38:99:0,99,1168 0/0:28,0:29:81.19:0,81,917 0/0:32,0:32:87.25:0,87,1041 0/1:13,20:33:99:635,0,306 0/0:30,0:30:81.20:0,81,921 1/1:0,39:39:99:1358,111,0 0/0:116,1:117:99:0,263,3443 0/0:32,0:32:87.25:0,87,1039 0/0:33,0:33:84.24:0,84,1016 0/0:35,0:35:93.26:0,93,1082 0/0:90,1:92:99:0,192,2631 0/0:77,0:77:99:0,199,2363 0/0:79,0:79:99:0,193,2305 0/0:67,0:67:99:0,165,1924 0/0:82,0:82:99:0,211,2714 0/0:63,1:64:99:0,120,1912 0/0:65,0:65:99:0,159,2068 0/0:59,0:59:99:0,147,1849 0/0:30,0:30:81.22:0,81,939 0/0:32,0:32:87.21:0,87,977 0/0:31,0:31:81.22:0,81,952 0/0:33,0:33:93.22:0,93,1040 0/0:28,1:29:43.40:0,43,820 0/0:89,0:89:99:0,226,2709 0/0:64,0:64:99:0,168,1978 0/0:31,0:31:84.23:0,84,979 0/0:40,0:40:99:0,105,1245 0/0:36,0:36:90.24:0,90,1074 0/0:83,0:83:99:0,214,2441 0/0:44,0:44:99:0,126,1418 0/0:48,0:49:99:0,129,1467 0/0:29,0:29:75.20:0,75,858 0/0:34,0:34:90.26:0,90,1068 0/0:37,0:37:99:0,105,1205 19 14581063 . A G 7233.94 . AC=9;AF=0.107;AN=84;BaseQRankSum=11.083;DP=2015;Dels=0.00;FS=1.403;HRun=1;HaplotypeScore=1.4382;InbreedingCoeff=0.1289;MQ=59.10;MQ0=0;MQRankSum=-0.693;QD=17.02;ReadPosRankSum=-2.259 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,123,1530 0/0:41,0:41:99:0,114,1402 0/0:25,0:25:69.18:0,69,830 0/0:95,0:95:99:0,262,3233 0/0:76,1:77:99:0,217,2702 1/1:0,53:53:99:1936,147,0 0/1:29,24:53:99:756,0,810 0/1:23,21:45:99:644,0,690 0/0:32,0:32:81.25:0,81,1009 0/0:28,0:28:78.23:0,78,945 0/0:34,0:34:99:0,99,1202 0/0:25,0:25:72.22:0,72,873 0/0:28,0:28:66.20:0,66,833 0/0:36,0:36:99:0,108,1328 0/0:115,0:117:99:0,307,3770 0/0:49,0:49:99:0,132,1629 0/0:34,0:34:93.26:0,93,1141 0/1:18,22:40:99:652,0,498 0/1:42,27:69:99:652,0,1192 0/0:89,0:89:99:0,235,2866 0/1:32,33:66:99:908,0,896 0/1:17,25:42:99:732,0,455 0/0:86,0:86:99:0,238,2984 0/0:46,0:46:99:0,126,1565 0/1:27,30:57:99:954,0,734 0/0:50,0:50:99:0,141,1755 0/0:48,0:48:99:0,114,1447 0/0:39,0:39:99:0,108,1329 0/0:33,0:34:90.25:0,90,1073 0/0:36,0:36:99:0,105,1291 0/0:26,0:27:69.22:0,69,855 0/0:77,0:77:99:0,211,2567 0/0:33,0:33:93.24:0,93,1103 0/0:32,0:32:87.26:0,87,1100 0/0:33,1:34:50.95:0,51,1010 0/0:31,0:31:84.26:0,84,1054 0/0:69,0:69:99:0,165,2040 0/0:37,0:37:99:0,99,1210 0/0:33,0:33:96.28:0,96,1151 0/0:46,0:46:99:0,135,1625 0/0:37,3:40:57.72:0,58,1105 0/0:36,0:36:90.28:0,90,1131 19 14583582 . C T 2648 . AC=31;AF=0.369;AN=84;BaseQRankSum=-9.577;DP=252;Dels=0.00;FS=3.289;HRun=0;HaplotypeScore=0.0883;InbreedingCoeff=0.1767;MQ=57.36;MQ0=0;MQRankSum=0.146;QD=18.26;ReadPosRankSum=0.258 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:70,6,0 0/0:2,0:2:3.01:0,3,39 0/0:3,0:3:6.02:0,6,72 0/0:15,0:15:36.11:0,36,458 0/0:4,0:4:12.04:0,12,155 0/0:5,0:5:15.05:0,15,196 0/1:2,2:4:56.67:57,0,71 0/0:4,0:4:12.04:0,12,159 0/0:6,0:6:12.04:0,12,151 0/1:3,2:5:52.74:53,0,96 0/0:4,0:4:12.04:0,12,153 0/1:1,4:5:19.31:124,0,19 0/0:2,0:2:6.02:0,6,76 1/1:0,8:8:21.05:232,21,0 1/1:0,21:21:54.12:591,54,0 0/1:2,6:8:18.08:155,0,18 0/1:4,2:6:11.64:12,0,138 0/1:3,2:5:53.58:54,0,98 0/0:8,0:8:18.05:0,18,216 0/0:9,0:9:24.07:0,24,293 1/1:0,6:6:18.05:215,18,0 0/0:3,0:3:9.03:0,9,109 0/0:10,0:10:27.08:0,27,340 1/1:0,3:3:9.03:104,9,0 0/0:9,0:9:27.09:0,27,362 0/1:1,2:3:26.23:50,0,26 0/0:7,0:7:18.06:0,18,222 0/0:5,0:5:12.04:0,12,149 0/1:5,2:7:50.32:50,0,164 1/1:0,4:4:12.03:138,12,0 0/1:5,4:9:75.23:75,0,166 0/1:5,5:10:99:127,0,134 0/1:4,6:10:99:181,0,121 0/1:3,2:5:52.74:53,0,101 0/1:1,3:4:27.28:93,0,27 0/0:2,0:2:6.02:0,6,69 1/1:0,8:8:18.05:199,18,0 0/1:3,1:4:20.46:20,0,97 1/1:0,6:6:18.05:209,18,0 0/0:3,0:3:9.03:0,9,111 0/0:6,0:6:18.06:0,18,223 0/1:1,0:2:1.76:0,3,33 19 14590236 . C T 1253.95 . AC=20;AF=0.250;AN=80;BaseQRankSum=1.330;DP=204;Dels=0.00;FS=4.164;HRun=0;HaplotypeScore=0.2470;InbreedingCoeff=0.2447;MQ=55.19;MQ0=0;MQRankSum=4.340;QD=15.29;ReadPosRankSum=-1.486 GT:AD:DP:GQ:PL ./. 0/0:1,0:1:3.01:0,3,32 0/1:1,2:3:33.29:39,0,33 0/0:12,0:12:36.10:0,36,439 0/1:10,5:15:99:123,0,262 0/0:6,0:6:18.05:0,18,224 0/0:7,0:7:15.03:0,15,175 0/0:7,0:7:15.05:0,15,192 0/0:6,0:6:12.04:0,12,153 0/0:1,0:1:3.01:0,3,35 0/0:5,0:5:15.05:0,15,179 1/1:0,6:6:15.05:183,15,0 1/1:0,3:3:9.03:110,9,0 1/1:0,3:3:9.03:113,9,0 0/0:6,0:6:15.03:0,15,156 0/0:6,0:6:18.05:0,18,206 0/1:1,1:2:19.67:32,0,20 0/0:3,0:3:9.03:0,9,110 0/0:2,0:2:6.02:0,6,71 0/0:8,0:8:21.07:0,21,268 0/0:5,0:5:12.04:0,12,148 0/0:8,0:8:24.05:0,24,255 0/0:9,0:9:24.07:0,24,309 0/1:2,5:7:53.40:111,0,53 0/1:6,3:9:83.63:84,0,169 0/0:6,0:6:15.03:0,15,175 0/0:2,0:2:6.02:0,6,70 0/0:1,0:1:3.01:0,3,32 1/1:0,3:3:9.03:110,9,0 0/0:2,0:2:6.02:0,6,69 0/0:3,0:3:9.02:0,9,104 0/1:4,4:8:94.79:95,0,108 0/0:5,0:5:12.04:0,12,150 ./. 0/0:4,0:4:12.04:0,12,145 0/0:4,0:4:9.03:0,9,116 0/1:4,6:10:88.60:188,0,89 1/1:0,4:4:9.03:119,9,0 0/1:3,3:6:57.42:64,0,57 0/0:3,0:3:9.02:0,9,93 0/1:1,1:2:30.96:31,0,33 0/1:0,1:1:1.76:34,3,0 19 14590279 . G C 390.12 . AC=7;AF=0.085;AN=82;BaseQRankSum=0.811;DP=199;Dels=0.00;FS=5.312;HRun=0;HaplotypeScore=0.2180;InbreedingCoeff=-0.1462;MQ=56.18;MQ0=0;MQRankSum=1.006;QD=9.75;ReadPosRankSum=0.509 GT:AD:DP:GQ:PL 0/0:3,0:3:9.02:0,9,98 ./. 0/0:2,0:2:6.01:0,6,66 0/0:12,0:12:36.12:0,36,461 0/0:8,0:8:24.08:0,24,307 0/1:4,4:8:99:106,0,101 0/1:3,2:5:59.65:60,0,84 0/0:6,0:6:15.05:0,15,192 0/0:3,0:3:6.01:0,6,64 0/0:1,0:1:3.01:0,3,38 0/0:5,0:5:12.03:0,12,151 0/0:5,0:5:15.02:0,15,170 0/0:5,0:5:9.03:0,9,114 0/0:6,0:6:15.04:0,15,166 0/0:12,0:13:30.08:0,30,352 0/0:7,0:7:18.05:0,18,211 0/0:1,0:1:3.01:0,3,32 0/1:2,1:3:29.23:30,0,29 0/1:4,1:5:23.53:24,0,131 0/0:7,0:7:18.05:0,18,208 0/1:2,3:5:61.33:97,0,61 0/0:5,0:6:15.04:0,15,173 0/0:13,0:13:33.08:0,33,429 0/0:3,0:3:9.03:0,9,116 0/1:2,3:5:58.06:105,0,58 0/0:3,0:3:9.03:0,9,109 0/0:2,0:2:6.02:0,6,73 0/0:2,0:2:6.02:0,6,74 0/0:2,0:2:6.02:0,6,70 0/0:4,0:4:12.01:0,12,132 0/0:4,0:4:12.04:0,12,142 0/1:6,3:9:78.46:78,0,199 0/0:3,0:3:6.02:0,6,73 0/0:2,0:2:6.02:0,6,75 0/0:3,0:3:9.03:0,9,109 0/0:3,0:3:9.03:0,9,107 0/0:6,0:6:18.05:0,18,215 0/0:3,0:3:9.03:0,9,108 0/0:4,0:4:12.03:0,12,137 0/0:3,0:3:9.03:0,9,110 0/0:4,0:4:12.04:0,12,151 0/0:4,0:4:12.04:0,12,144 19 14593720 . G A 9.01 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.206;DP=367;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2738;InbreedingCoeff=-0.0316;MQ=59.03;MQ0=0;MQRankSum=0.735;QD=1.80;ReadPosRankSum=-0.345 GT:AD:DP:GQ:PL 0/0:5,0:5:12.04:0,12,160 0/0:8,0:8:24.08:0,24,311 0/0:8,0:8:21.05:0,21,243 0/0:19,0:19:54.16:0,54,693 0/0:20,0:20:57.15:0,57,721 0/0:7,0:7:18.05:0,18,213 0/0:14,0:14:36.10:0,36,456 0/0:16,0:16:45.14:0,45,589 0/0:6,0:6:15.04:0,15,179 0/0:8,0:8:24.07:0,24,282 0/1:3,2:5:54.43:54,0,98 0/0:10,0:10:30.09:0,30,366 0/0:2,0:2:6.02:0,6,77 0/0:5,0:5:12.01:0,12,144 0/0:15,0:15:42.12:0,42,508 0/0:11,0:11:33.09:0,33,407 0/0:5,0:5:12.04:0,12,156 0/0:8,0:8:18.05:0,18,222 0/0:16,0:16:42.10:0,42,498 0/0:14,0:14:39.12:0,39,471 0/0:8,0:8:21.07:0,21,267 0/0:10,0:10:27.09:0,27,352 0/0:22,0:22:57.18:0,57,737 0/0:10,0:10:27.06:0,27,330 0/0:9,0:9:27.09:0,27,363 0/0:4,0:4:9.03:0,9,111 0/0:4,0:4:12.03:0,12,144 0/0:6,0:6:15.05:0,15,193 0/0:10,0:10:24.07:0,24,286 0/0:3,0:3:9.03:0,9,117 0/0:4,0:4:12.04:0,12,152 0/0:15,0:15:33.11:0,33,432 0/0:12,0:12:30.09:0,30,378 0/0:2,0:2:6.02:0,6,79 0/0:4,0:4:12.03:0,12,143 0/0:1,0:1:3.01:0,3,40 0/0:12,0:12:33.06:0,33,370 0/0:5,0:5:15.05:0,15,188 0/0:4,0:4:12.04:0,12,152 0/0:6,0:6:18.04:0,18,207 0/0:9,0:9:24.07:0,24,297 0/0:5,0:5:15.05:0,15,188 19 14629138 . C T 16.55 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.304;DP=855;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.6950;InbreedingCoeff=-0.0130;MQ=57.68;MQ0=0;MQRankSum=-0.471;QD=1.18;ReadPosRankSum=1.140 GT:AD:DP:GQ:PL 0/0:20,0:20:54.14:0,54,614 0/0:8,0:8:24.06:0,24,255 0/0:15,0:15:39.09:0,39,431 0/0:40,0:40:99:0,117,1348 0/0:62,0:62:99:0,171,2010 0/0:26,0:26:69.21:0,69,840 0/0:34,0:34:99:0,99,1155 0/0:35,0:35:96.28:0,96,1141 0/0:15,0:15:42.12:0,42,499 0/0:14,0:14:42.11:0,42,457 0/0:16,0:16:42.10:0,42,457 0/0:8,0:8:24.06:0,24,255 0/0:4,0:4:12.03:0,12,129 0/0:17,0:17:48.11:0,48,524 0/0:36,1:37:99:0,108,1165 0/1:11,3:14:62.65:63,0,320 0/0:13,0:13:36.10:0,36,413 0/0:11,0:11:30.07:0,30,337 0/0:18,0:18:51.11:0,51,569 0/0:28,0:28:66.18:0,66,785 0/0:19,0:19:48.13:0,48,539 0/0:18,0:18:48.13:0,48,537 0/0:61,0:61:99:0,172,2075 0/0:29,0:29:78.23:0,78,936 0/0:28,0:28:78.24:0,78,948 0/0:23,0:23:63.19:0,63,755 0/0:16,0:16:45.12:0,45,510 0/0:13,0:13:36.09:0,36,398 0/0:9,0:9:27.05:0,27,302 0/0:17,0:17:45.10:0,45,486 0/0:12,0:12:33.06:0,33,358 0/0:30,0:30:69.18:0,69,817 0/0:15,0:15:39.09:0,39,443 0/0:13,0:13:33.08:0,33,366 0/0:15,0:15:45.08:0,45,477 0/0:11,0:11:33.08:0,33,366 0/0:20,0:20:57.15:0,57,618 0/0:13,0:13:39.10:0,39,427 0/0:19,0:19:51.11:0,51,555 0/0:15,0:15:42.09:0,42,460 0/0:11,0:11:27.07:0,27,313 0/0:13,0:13:36.09:0,36,406 19 14629150 . G A 7753.76 . AC=34;AF=0.405;AN=84;BaseQRankSum=-8.413;DP=736;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.5475;InbreedingCoeff=0.0091;MQ=57.58;MQ0=0;MQRankSum=1.815;QD=16.26;ReadPosRankSum=-0.795 GT:AD:DP:GQ:PL 1/1:0,20:20:54.16:647,54,0 1/1:0,5:5:15.04:171,15,0 0/1:2,9:11:37.98:288,0,38 0/1:22,17:39:99:454,0,607 0/0:49,0:49:99:0,144,1858 0/1:13,10:23:99:304,0,386 0/1:16,15:31:99:379,0,524 0/1:9,15:24:99:418,0,283 0/0:16,0:16:42.12:0,42,515 0/0:12,0:12:36.09:0,36,416 0/0:12,0:12:36.10:0,36,421 1/1:0,7:7:21.06:242,21,0 0/1:4,1:5:23.22:23,0,96 1/1:0,14:14:39.12:458,39,0 0/0:31,0:31:84.25:0,84,1008 0/0:9,0:9:27.08:0,27,322 0/1:6,5:11:82.46:82,0,186 0/0:10,0:10:27.08:0,27,337 0/0:18,0:18:45.14:0,45,566 0/1:10,16:26:99:386,0,246 0/0:13,0:13:33.10:0,33,401 0/0:18,0:18:48.15:0,48,595 0/1:28,26:54:99:743,0,876 0/1:19,10:29:99:203,0,620 0/1:17,11:28:99:309,0,492 0/1:14,7:21:99:200,0,388 1/1:0,17:17:48.15:588,48,0 0/1:6,5:11:99:121,0,159 0/1:3,4:7:89.78:114,0,90 0/0:15,0:15:45.13:0,45,533 0/0:9,0:9:27.07:0,27,313 0/0:23,0:23:57.16:0,57,703 0/1:5,8:13:99:235,0,121 1/1:0,11:11:30.09:361,30,0 0/1:9,4:13:99:105,0,288 0/1:6,4:10:99:108,0,178 0/1:9,6:15:99:178,0,241 0/1:4,6:10:99:182,0,112 0/0:14,0:14:39.11:0,39,463 0/1:7,6:13:99:172,0,194 1/1:0,9:9:24.07:282,24,0 0/0:10,0:10:27.07:0,27,314 19 14629162 . G A 383.61 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.870;DP=623;Dels=0.00;FS=2.392;HRun=1;HaplotypeScore=1.6494;InbreedingCoeff=-0.0288;MQ=57.48;MQ0=0;MQRankSum=2.562;QD=10.37;ReadPosRankSum=-0.556 GT:AD:DP:GQ:PL 0/0:18,0:19:48.13:0,48,596 0/0:4,0:4:12.04:0,12,140 0/0:10,0:10:27.06:0,27,312 0/0:33,0:33:96.27:0,96,1186 0/0:47,0:47:99:0,138,1783 0/1:8,10:18:99:258,0,248 0/0:23,0:23:66.21:0,66,859 0/1:12,7:19:99:188,0,352 0/0:13,0:13:33.10:0,33,415 0/0:11,0:11:33.10:0,33,407 0/0:9,0:9:24.07:0,24,287 0/0:6,0:6:15.05:0,15,182 0/0:3,0:3:9.02:0,9,106 0/0:12,0:12:33.10:0,33,402 0/0:25,0:27:72.17:0,72,835 0/0:8,0:8:24.08:0,24,305 0/0:9,0:9:27.06:0,27,302 0/0:10,0:10:24.07:0,24,300 0/0:14,0:15:39.12:0,39,488 0/0:23,0:23:51.16:0,51,650 0/0:10,0:10:27.08:0,27,328 0/0:14,0:14:39.09:0,39,475 0/0:47,0:47:99:0,126,1618 0/0:29,0:29:78.25:0,78,1041 0/0:26,0:26:69.22:0,69,884 0/0:19,0:19:51.16:0,51,660 0/0:13,0:13:39.12:0,39,481 0/0:9,0:10:27.08:0,27,334 0/0:5,0:5:15.05:0,15,184 0/0:14,0:14:42.11:0,42,500 0/0:7,0:7:21.05:0,21,250 0/0:20,0:20:54.16:0,54,665 0/0:10,0:10:27.04:0,27,311 0/0:8,0:8:18.06:0,18,230 0/0:7,0:7:21.07:0,21,258 0/0:10,0:10:30.07:0,30,351 0/0:11,0:11:30.09:0,30,364 0/0:9,0:9:27.06:0,27,312 0/0:12,0:12:36.10:0,36,434 0/0:9,0:9:27.08:0,27,335 0/0:6,0:6:12.04:0,12,142 0/0:8,0:8:24.07:0,24,287 19 14705574 . T C 2121.98 . AC=6;AF=0.071;AN=84;BaseQRankSum=-7.302;DP=1471;Dels=0.00;FS=1.396;HRun=2;HaplotypeScore=0.9986;InbreedingCoeff=-0.0769;MQ=59.05;MQ0=0;MQRankSum=0.440;QD=11.35;ReadPosRankSum=-2.367 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,108,1296 0/0:35,0:35:99:0,102,1268 0/0:21,0:21:57.16:0,57,686 0/0:37,0:37:99:0,108,1347 0/0:30,0:30:75.24:0,75,967 0/0:45,0:45:99:0,108,1409 0/0:26,0:26:72.21:0,72,894 0/0:22,0:22:60.19:0,60,773 0/0:38,0:38:99:0,102,1245 0/0:30,0:30:78.22:0,78,945 0/0:28,0:28:78.25:0,78,980 0/0:18,0:18:48.15:0,48,595 0/0:24,0:24:69.21:0,69,846 0/0:29,0:30:84.26:0,84,1034 0/0:79,0:79:99:0,226,2691 0/0:33,0:33:96.29:0,96,1162 0/0:23,0:23:63.20:0,63,790 0/0:25,0:25:72.21:0,72,872 0/0:68,0:69:99:0,175,2140 0/0:76,0:77:99:0,205,2523 0/1:27,23:50:99:524,0,783 0/1:19,20:39:99:516,0,469 0/0:38,0:39:99:0,102,1306 0/0:28,0:28:78.24:0,78,987 0/0:42,0:42:99:0,99,1259 0/0:33,0:33:78.25:0,78,1009 0/1:6,8:14:99:225,0,176 0/1:21,13:34:99:294,0,610 0/1:11,11:22:99:323,0,282 0/0:31,0:31:93.27:0,93,1120 0/0:30,0:30:84.25:0,84,1031 0/0:61,0:61:99:0,166,2072 0/0:39,0:39:99:0,102,1252 0/0:36,0:37:99:0,102,1247 0/0:30,0:30:87.27:0,87,1071 0/0:30,0:30:78.21:0,78,934 0/0:61,0:61:99:0,172,2116 0/1:15,13:28:99:346,0,455 0/0:24,0:24:72.23:0,72,892 0/0:26,0:27:78.22:0,78,936 0/0:29,0:29:81.24:0,81,985 0/0:15,0:15:45.14:0,45,547 19 14710546 . C G 25.96 . AC=2;AF=0.024;AN=84;BaseQRankSum=-8.431;DP=1199;Dels=0.00;FS=196.331;HRun=3;HaplotypeScore=0.4798;InbreedingCoeff=-0.0744;MQ=58.44;MQ0=0;MQRankSum=0.889;QD=0.47;ReadPosRankSum=-9.240 GT:AD:DP:GQ:PL 0/0:14,6:20:2.30:2,0,278 0/0:20,8:28:26.49:0,26,594 0/0:13,6:19:36.10:0,36,434 0/0:27,14:41:40.67:0,41,854 0/0:10,16:26:27.07:0,27,333 0/0:16,10:26:36.12:0,36,473 0/0:9,9:18:18.06:0,18,244 0/0:15,8:23:11.42:0,11,415 0/0:21,14:35:60.16:0,60,724 0/0:19,8:27:31.54:0,32,675 0/1:17,10:27:20.82:21,0,359 0/1:15,13:28:62.31:62,0,300 0/0:7,4:11:15.04:0,15,180 0/0:22,8:30:51.13:0,51,612 0/0:52,20:72:52.72:0,53,1560 0/0:22,10:33:1.46:4,0,572 0/0:22,4:26:45.14:0,45,565 0/0:21,3:24:51.16:0,51,632 0/0:35,10:45:14.43:0,14,1038 0/0:44,14:58:79.63:0,80,1234 0/0:30,15:46:43.87:0,44,882 0/0:23,7:30:57.18:0,57,701 0/0:15,12:28:10.57:0,11,496 0/0:8,3:11:21.07:0,21,281 0/0:10,12:22:0.30:11,0,198 0/0:9,5:14:21.06:0,21,265 0/0:11,3:14:21.07:0,21,268 0/0:22,7:29:3.08:0,3,668 0/0:17,7:24:45.12:0,45,552 0/0:13,6:19:1.30:5,0,227 0/0:16,2:18:48.12:0,48,568 0/0:32,13:45:54.17:0,54,665 0/0:24,8:32:51.16:0,51,635 0/0:19,10:29:51.14:0,51,627 0/0:22,9:31:57.18:0,57,716 0/0:14,10:24:14.41:0,14,368 0/0:27,7:34:77.91:0,78,924 0/0:14,7:21:33.10:0,33,402 0/0:21,9:30:18.83:0,19,579 0/0:15,7:22:5.99:0,6,436 0/0:21,10:31:22.47:0,22,527 0/0:21,7:28:23.54:0,24,576 19 14740974 . G A 1335.94 . AC=2;AF=0.024;AN=84;BaseQRankSum=-9.962;DP=2753;Dels=0.00;FS=0.537;HRun=0;HaplotypeScore=1.2986;InbreedingCoeff=-0.0244;MQ=59.14;MQ0=0;MQRankSum=0.490;QD=14.36;ReadPosRankSum=0.628 GT:AD:DP:GQ:PL 0/0:69,0:69:99:0,187,2335 0/1:17,26:43:99:721,0,498 0/1:24,26:50:99:677,0,664 0/0:96,0:96:99:0,259,3522 0/0:81,0:81:99:0,217,2971 0/0:68,0:68:99:0,181,2443 0/0:64,0:65:99:0,175,2336 0/0:54,0:54:99:0,147,1982 0/0:52,0:52:99:0,141,1786 0/0:41,0:42:99:0,111,1398 0/0:36,0:36:99:0,105,1338 0/0:49,0:49:99:0,138,1743 0/0:38,0:38:99:0,111,1376 0/0:56,0:56:99:0,153,1922 0/0:190,0:191:99:0,518,6547 0/0:44,0:44:99:0,129,1628 0/0:50,0:50:99:0,138,1770 0/0:50,0:50:99:0,144,1790 0/0:112,0:114:99:0,292,3654 0/0:105,0:105:99:0,262,3410 0/0:115,0:116:99:0,319,4052 0/0:50,0:50:99:0,141,1790 0/0:100,0:100:99:0,262,3595 0/0:37,0:37:96.31:0,96,1318 0/0:60,0:60:99:0,166,2249 0/0:55,0:55:99:0,147,2007 0/0:36,0:36:99:0,99,1273 0/0:47,0:47:99:0,135,1704 0/0:42,0:42:99:0,123,1556 0/0:62,0:62:99:0,178,2242 0/0:56,0:56:99:0,156,1961 0/0:115,1:116:99:0,257,3708 0/0:67,0:67:99:0,181,2306 0/0:51,0:51:99:0,147,1864 0/0:53,0:53:99:0,147,1880 0/0:72,0:72:99:0,190,2431 0/0:86,0:86:99:0,244,3030 0/0:63,0:63:99:0,178,2248 0/0:72,0:72:99:0,211,2632 0/0:55,0:55:99:0,159,1995 0/0:49,0:49:99:0,135,1690 0/0:55,0:55:99:0,153,1932 19 14752325 . C T 53591.56 . AC=73;AF=0.869;AN=84;BaseQRankSum=8.804;DP=2179;Dels=0.00;FS=45.585;HRun=0;HaplotypeScore=1.0756;InbreedingCoeff=-0.1507;MQ=34.03;MQ0=165;MQRankSum=-23.372;QD=24.59;ReadPosRankSum=1.647 GT:AD:DP:GQ:PL 1/1:0,23:23:60.17:668,60,0 1/1:0,42:42:99:1224,111,0 0/1:20,13:33:99:298,0,509 1/1:1,128:129:99:3900,328,0 1/1:1,133:135:99:4032,326,0 0/1:56,37:94:99:809,0,1595 1/1:0,79:79:99:2504,226,0 0/1:55,53:108:99:1270,0,1631 1/1:0,40:40:99:1164,105,0 0/1:21,20:41:99:457,0,521 1/1:0,23:23:60.16:661,60,0 1/1:0,33:33:84.23:932,84,0 1/1:0,24:24:54.15:597,54,0 1/1:0,41:41:99:1326,120,0 1/1:0,132:132:99:3901,355,0 1/1:0,25:25:66.18:735,66,0 1/1:0,28:28:72.20:799,72,0 1/1:0,28:28:78.21:865,78,0 1/1:0,48:48:99:1234,111,0 1/1:0,44:44:99:1279,114,0 0/1:23,15:38:99:355,0,649 0/1:19,18:37:99:460,0,474 1/1:0,131:131:99:3989,361,0 1/1:0,79:79:99:2277,205,0 1/1:1,87:88:99:2585,235,0 1/1:0,65:65:99:1992,177,0 1/1:0,28:28:81.22:903,81,0 1/1:0,28:28:78.21:862,78,0 1/1:0,28:28:63.17:700,63,0 1/1:0,28:28:75.19:821,75,0 0/1:19,6:25:97.99:98,0,526 1/1:0,56:56:99:1631,147,0 1/1:0,57:57:99:1732,156,0 1/1:0,35:35:99:1081,99,0 1/1:0,33:34:90.25:999,90,0 1/1:0,32:32:90.21:978,90,0 0/1:43,19:63:99:337,0,1094 0/1:16,16:32:99:445,0,404 1/1:0,37:37:99:1160,105,0 0/1:26,17:44:99:439,0,686 1/1:0,29:29:78.21:863,78,0 0/1:21,14:35:99:233,0,573 19 14758168 . G A 24245.23 . AC=21;AF=0.250;AN=84;BaseQRankSum=-29.769;DP=3258;DS;Dels=0.00;FS=1.012;HRun=0;HaplotypeScore=1.3417;InbreedingCoeff=0.0476;MQ=58.12;MQ0=0;MQRankSum=0.795;QD=16.47;ReadPosRankSum=1.783 GT:AD:DP:GQ:PL 0/1:37,23:60:99:634,0,1086 0/0:59,0:59:99:0,166,2085 0/1:40,27:67:99:687,0,1135 0/0:89,0:89:99:0,253,3345 0/0:70,0:70:99:0,196,2626 0/1:35,44:80:99:1305,0,1118 0/0:55,0:55:99:0,153,2050 0/1:35,30:65:99:845,0,1148 0/0:62,0:62:99:0,175,2182 0/0:77,0:77:99:0,208,2583 0/1:42,25:67:99:705,0,1217 0/1:29,37:66:99:1045,0,879 0/0:66,0:66:99:0,187,2345 0/1:29,46:75:99:1349,0,819 0/1:109,82:192:99:2199,0,3219 0/1:29,31:60:99:883,0,911 0/0:71,0:71:99:0,199,2536 0/0:64,0:64:99:0,172,2196 0/0:102,0:104:99:0,298,3649 0/0:129,0:129:99:0,334,4238 0/1:62,55:118:99:1530,0,1779 1/1:0,72:72:99:2318,193,0 0/1:36,52:88:99:1509,0,1034 0/1:42,35:77:99:1019,0,1156 0/0:65,0:65:99:0,178,2365 1/1:0,66:66:99:2258,187,0 0/0:48,0:48:99:0,138,1744 0/0:71,0:71:99:0,196,2450 0/0:59,0:59:99:0,160,2038 0/0:63,0:63:99:0,181,2241 0/0:64,0:64:99:0,172,2217 0/0:109,0:109:99:0,286,3663 0/0:86,0:86:99:0,232,2927 0/0:88,0:88:99:0,247,3098 0/0:69,0:69:99:0,175,2222 0/0:67,0:67:99:0,196,2444 0/1:56,57:113:99:1470,0,1593 0/1:33,38:71:99:1092,0,942 0/0:75,0:75:99:0,205,2599 0/1:28,36:64:99:1094,0,785 1/1:1,70:71:99:2304,164,0 0/0:75,1:76:99:0,187,2672 19 14863150 . G A 874.54 . 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GC G 298.66 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.916;DP=1953;FS=0.000;HRun=4;HaplotypeScore=98.6523;InbreedingCoeff=-0.0120;MQ=51.35;MQ0=162;MQRankSum=-0.848;QD=9.33;ReadPosRankSum=0.615 GT:AD:DP:GQ:PL 0/0:27,0:24:69.23:0,69,955 0/0:31,0:28:78.26:0,78,1080 0/0:34,0:32:90.30:0,90,1257 0/0:105,0:93:99:0,268,3715 0/0:104,0:89:99:0,253,3501 0/0:73,0:65:99:0,187,2596 0/0:46,0:35:99:0,108,1500 0/0:70,0:64:99:0,175,2437 0/0:40,0:35:99:0,99,1385 0/0:28,0:28:81.25:0,81,1116 0/0:29,0:29:84.26:0,84,1155 0/0:28,0:25:62.81:0,63,857 0/0:24,0:23:69.23:0,69,955 0/0:30,0:27:72.24:0,72,1007 0/0:119,0:102:99:0,289,4007 0/0:36,0:32:90.30:0,90,1260 0/0:26,0:23:63.21:0,63,881 0/0:29,0:27:72.22:0,72,991 0/0:60,0:57:99:0,159,2178 0/0:58,0:52:99:0,150,2058 0/0:52,0:50:99:0,138,1908 0/0:21,0:19:57.15:0,57,776 0/0:102,0:92:99:0,271,3722 0/0:75,0:69:99:0,199,2774 0/0:81,0:69:99:0,196,2700 0/0:80,0:72:99:0,202,2802 0/0:20,0:19:57.19:0,57,780 0/0:38,0:34:90.30:0,90,1252 0/1:20,12:28:99:354,0,510 0/0:36,0:32:96.32:0,96,1344 0/0:24,0:20:57.02:0,57,770 0/0:66,0:56:99:0,147,2031 0/0:44,0:38:99:0,108,1488 0/0:23,0:19:51.17:0,51,714 0/0:25,0:23:66.22:0,66,915 0/0:35,0:31:84.28:0,84,1166 0/0:58,0:53:99:0,160,2205 0/0:48,0:46:99:0,129,1802 0/0:29,0:27:72.23:0,72,991 0/0:26,0:23:63.21:0,63,882 0/0:15,0:15:42.14:0,42,581 0/0:26,0:25:75.25:0,75,1051 19 15131276 . C G 129.05 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.499;DP=930;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.1041;InbreedingCoeff=-0.0121;MQ=57.94;MQ0=0;MQRankSum=0.638;QD=6.45;ReadPosRankSum=-1.239 GT:AD:DP:GQ:PL 0/0:20,0:20:60.18:0,60,735 0/0:15,0:15:42.13:0,42,534 0/1:12,8:20:99:175,0,319 0/0:22,0:22:66.21:0,66,859 0/0:33,0:33:93.31:0,93,1268 0/0:16,0:16:48.16:0,48,640 0/0:27,0:27:78.24:0,78,1001 0/0:36,0:36:99:0,102,1336 0/0:27,0:27:78.24:0,78,971 0/0:19,0:19:54.16:0,54,663 0/0:14,1:15:39.12:0,39,494 0/0:10,0:10:27.08:0,27,322 0/0:16,0:16:48.14:0,48,586 0/0:19,0:19:54.16:0,54,670 0/0:59,0:59:99:0,168,2075 0/0:18,0:18:51.16:0,51,640 0/0:22,0:22:63.19:0,63,765 0/0:13,0:13:36.11:0,36,452 0/0:26,0:27:75.23:0,75,922 0/0:38,0:38:99:0,108,1292 0/0:34,0:34:90.26:0,90,1091 0/0:22,0:22:63.20:0,63,802 0/0:27,0:27:78.25:0,78,1037 0/0:13,0:13:39.13:0,39,517 0/0:20,0:20:57.18:0,57,738 0/0:16,0:16:45.13:0,45,577 0/0:17,0:17:48.14:0,48,606 0/0:13,0:13:33.11:0,33,420 0/0:22,0:22:63.19:0,63,780 0/0:23,0:23:69.21:0,69,854 0/0:19,0:19:54.16:0,54,660 0/0:35,0:35:93.28:0,93,1151 0/0:24,0:24:72.21:0,72,894 0/0:16,0:16:48.14:0,48,581 0/0:17,0:17:42.13:0,42,529 0/0:15,0:15:42.07:0,42,471 0/0:38,0:38:99:0,111,1369 0/0:17,0:17:51.15:0,51,627 0/0:18,0:18:54.15:0,54,658 0/0:16,0:16:48.15:0,48,602 0/0:16,0:16:48.13:0,48,581 0/0:20,0:20:57.17:0,57,703 19 15131330 . G A 6852.09 . AC=22;AF=0.262;AN=84;BaseQRankSum=6.822;DP=952;Dels=0.00;FS=6.641;HRun=0;HaplotypeScore=0.9556;InbreedingCoeff=0.0135;MQ=58.36;MQ0=0;MQRankSum=-0.296;QD=15.82;ReadPosRankSum=0.954 GT:AD:DP:GQ:PL 0/1:13,13:26:99:379,0,253 1/1:0,18:18:42.10:476,42,0 0/1:7,12:19:99:275,0,171 0/0:28,0:28:72.18:0,72,816 0/0:32,0:32:81.21:0,81,947 0/0:24,0:24:66.12:0,66,756 0/0:17,0:17:48.13:0,48,556 0/0:34,0:34:84.22:0,84,972 0/1:8,18:26:99:524,0,100 0/0:19,0:19:45.10:0,45,502 0/1:8,9:18:99:260,0,160 0/0:20,0:20:51.08:0,51,519 0/0:9,0:9:15.02:0,15,154 0/0:15,0:15:42.07:0,42,432 0/1:38,31:69:99:777,0,685 0/1:10,5:15:99:132,0,262 0/1:11,7:18:99:206,0,245 0/0:16,0:17:45.11:0,45,501 0/0:25,0:25:63.15:0,63,688 0/0:34,0:34:87.21:0,87,962 0/1:18,18:37:99:387,0,403 0/1:9,14:24:99:396,0,163 0/0:38,0:38:93.25:0,93,1086 0/0:12,0:12:30.07:0,30,330 0/0:20,0:20:45.09:0,45,491 0/0:18,0:18:45.11:0,45,525 1/1:0,17:17:36.09:408,36,0 0/1:5,7:12:93.10:215,0,93 1/1:0,17:17:48.15:582,48,0 0/0:23,0:23:51.08:0,51,551 0/0:13,0:13:24.05:0,24,256 0/0:37,0:37:96.25:0,96,1076 0/1:7,19:26:99:554,0,152 0/0:16,0:16:39.08:0,39,412 0/0:23,0:23:63.13:0,63,676 0/1:5,12:18:99:368,0,107 0/0:32,0:32:84.13:0,84,884 0/1:14,6:20:99:152,0,335 0/1:9,8:17:99:195,0,178 0/0:13,0:13:36.09:0,36,415 0/1:10,9:19:99:264,0,233 0/1:7,10:17:99:302,0,148 19 15131343 . A C 32.52 . AC=4;AF=0.048;AN=84;BaseQRankSum=-11.931;DP=1186;Dels=0.00;FS=145.022;HRun=2;HaplotypeScore=0.7456;InbreedingCoeff=-0.0655;MQ=58.53;MQ0=0;MQRankSum=-0.682;QD=0.29;ReadPosRankSum=-8.146 GT:AD:DP:GQ:PL 0/0:21,5:26:38.51:0,39,702 0/0:13,6:19:36.10:0,36,429 0/0:16,11:27:20.42:0,20,472 0/0:26,11:37:45.74:0,46,877 0/0:23,11:34:46.49:0,46,772 0/0:17,7:24:48.10:0,48,545 0/1:17,6:23:20.08:20,0,493 0/0:25,18:44:69.18:0,69,807 0/1:20,15:35:14.07:14,0,552 0/0:17,5:22:51.10:0,51,568 0/0:14,6:20:42.12:0,42,500 0/0:18,11:29:45.13:0,45,535 0/0:10,5:15:24.06:0,24,267 0/1:13,8:21:22.17:22,0,322 0/0:62,31:93:84.77:0,85,1846 0/0:9,10:20:8.27:0,8,292 0/0:15,10:25:6.87:0,7,415 0/0:15,8:23:36.10:0,36,426 0/0:21,4:25:23.73:0,24,616 0/0:22,15:37:63.18:0,63,730 0/0:31,11:42:64.38:0,64,958 0/0:23,5:28:60.18:0,60,720 0/0:36,13:49:72.69:0,73,1203 0/0:13,4:17:30.07:0,30,357 0/0:20,8:28:45.07:0,45,495 0/0:18,5:23:54.16:0,54,655 0/0:14,9:23:16.42:0,16,436 0/0:14,5:19:14.43:0,14,440 0/0:14,11:25:39.12:0,39,482 0/0:20,6:26:51.16:0,51,613 0/0:8,8:16:2.29:2,0,243 0/0:37,11:48:66.65:0,67,1136 0/0:23,9:32:63.17:0,63,733 0/0:16,6:22:42.12:0,42,507 0/0:18,5:23:54.11:0,54,604 0/0:14,5:19:39.10:0,39,454 0/1:17,16:33:59.32:59,0,525 0/0:16,12:28:18.99:0,19,508 0/0:14,4:18:42.10:0,42,480 0/0:13,8:21:5.14:0,5,421 0/0:16,2:18:48.14:0,48,571 0/0:18,11:29:45.13:0,45,546 19 15233581 . C A 22890.07 . AC=30;AF=0.357;AN=84;BaseQRankSum=-10.419;DP=2192;Dels=0.00;FS=17.203;HRun=1;HaplotypeScore=2.1480;InbreedingCoeff=0.0667;MQ=58.73;MQ0=0;MQRankSum=0.230;QD=19.80;ReadPosRankSum=-0.546 GT:AD:DP:GQ:PL 0/1:32,24:56:99:688,0,927 1/1:0,44:44:99:1390,111,0 0/1:21,16:37:99:440,0,669 0/1:51,46:97:99:1356,0,1648 1/1:0,58:58:99:2117,172,0 0/1:16,26:42:99:814,0,518 0/0:54,1:55:99:0,123,1996 1/1:0,52:52:99:1904,156,0 0/1:30,19:49:99:464,0,940 0/1:18,19:38:99:501,0,506 0/0:44,0:44:99:0,126,1587 0/1:19,19:38:99:542,0,568 1/1:0,35:35:99:1224,99,0 0/0:43,0:43:99:0,123,1523 0/0:138,0:138:99:0,391,4821 0/1:21,32:53:99:933,0,581 0/0:39,0:39:99:0,105,1292 0/0:37,0:37:99:0,105,1294 0/0:69,1:70:99:0,205,2482 0/0:84,0:84:99:0,235,2925 1/1:0,58:58:99:1969,162,0 0/1:25,24:49:99:694,0,657 0/0:109,1:110:99:0,268,3935 0/0:37,0:37:99:0,105,1389 0/1:34,28:62:99:812,0,1073 0/1:22,24:46:99:734,0,647 0/1:19,22:41:99:659,0,563 0/0:45,0:45:99:0,123,1531 0/1:21,21:42:99:589,0,607 0/0:44,1:45:88.58:0,89,1454 0/0:46,2:48:78.93:0,79,1582 1/1:0,63:63:99:2183,178,0 0/0:49,0:49:99:0,132,1624 0/1:17,15:32:99:433,0,493 0/1:22,27:49:99:774,0,620 0/0:41,0:42:99:0,114,1376 0/0:83,1:84:99:0,235,2908 0/1:27,19:46:99:558,0,728 0/1:16,24:40:99:697,0,487 0/0:30,0:30:84.25:0,84,1035 0/1:15,14:29:99:415,0,462 0/0:36,0:36:99:0,102,1264 19 15302289 . T G 67.05 . 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C G 29.84 . 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C G 416.07 . 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G A 96.49 . 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G T 3554.91 . 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G C 430.79 . 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C T 693.37 . 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G A 16352.88 . 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G T 604.56 . 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G C 259.26 . 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T C 6289.62 . 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C T 67915.04 . 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G A 20068.65 . 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T C 10315.28 . AC=8;AF=0.095;AN=84;BaseQRankSum=11.854;DP=4000;DS;Dels=0.00;FS=8.447;HRun=0;HaplotypeScore=2.2772;InbreedingCoeff=0.4474;MQ=58.76;MQ0=1;MQRankSum=0.419;QD=20.97;ReadPosRankSum=0.098 GT:AD:DP:GQ:PL 0/0:96,0:96:99:0,256,3075 0/0:64,0:64:99:0,181,2185 0/0:65,0:65:99:0,178,2145 0/0:158,0:158:99:0,418,5178 0/0:176,0:177:99:0,454,5689 1/1:0,94:95:99:3141,244,0 0/1:34,42:76:99:1259,0,866 1/1:0,78:78:99:2590,202,0 0/0:75,0:75:99:0,208,2463 0/0:77,0:77:99:0,208,2527 0/0:78,0:79:99:0,211,2547 0/0:73,0:73:99:0,214,2539 0/0:60,0:60:99:0,159,1900 0/0:60,0:60:99:0,174,2058 0/0:247,0:248:99:0,617,7578 0/0:73,0:73:99:0,205,2466 0/0:85,0:85:99:0,241,2896 0/0:68,0:68:99:0,193,2334 0/0:135,0:135:99:0,364,4447 0/0:163,0:163:99:0,424,5202 0/0:158,0:160:99:0,415,5099 0/0:89,0:89:99:0,241,2864 0/0:170,1:171:99:0,386,5205 0/1:30,34:64:99:996,0,842 0/1:45,48:93:99:1343,0,1244 0/0:80,0:80:99:0,214,2600 0/0:51,0:51:99:0,144,1731 0/0:82,0:82:99:0,220,2675 0/0:53,0:53:99:0,147,1782 0/0:91,0:91:99:0,247,3010 0/0:66,0:67:99:0,175,2159 0/0:142,0:142:99:0,373,4613 0/0:100,0:101:99:0,268,3250 0/0:75,0:75:99:0,199,2451 0/0:58,0:58:99:0,159,1948 0/0:83,0:85:99:0,223,2715 0/0:145,0:145:99:0,361,4410 0/0:84,0:84:99:0,232,2776 0/0:65,0:65:99:0,178,2140 0/0:78,0:79:99:0,220,2663 0/0:72,1:73:99:0,180,2470 0/1:45,40:86:99:986,0,1320 19 16008388 . A C 4588.30 . 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T C 45410.98 . 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C T 10.64 . 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G T 1233.41 . 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G C 1227.97 . 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A G 62.97 . 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G A 812.82 . 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G A 41919.21 . 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C T 2981.03 . 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C T 918.36 . 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A G 10248.66 . 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T G 36018.97 . 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C T 681.34 . 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G T 1014.64 . 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G A 969.57 . 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G T 308.30 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.889;DP=2449;Dels=0.00;FS=0.952;HRun=1;HaplotypeScore=2.3618;InbreedingCoeff=-0.0120;MQ=59.17;MQ0=0;MQRankSum=0.728;QD=8.33;ReadPosRankSum=0.396 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,129,1524 0/0:54,0:54:99:0,144,1768 0/0:31,0:31:84.26:0,84,1045 0/0:122,0:122:99:0,334,4123 0/0:98,0:98:99:0,259,3226 0/0:59,0:59:99:0,171,2149 0/0:63,1:64:99:0,135,2034 0/0:84,0:84:99:0,226,2852 0/0:56,0:56:99:0,150,1812 0/0:46,0:46:99:0,135,1630 0/0:48,0:48:99:0,135,1658 0/0:32,0:32:87.25:0,87,1052 0/0:41,0:41:99:0,111,1394 0/0:46,0:46:99:0,123,1486 0/0:146,0:146:99:0,358,4415 0/0:52,0:52:99:0,141,1720 0/0:56,0:56:99:0,159,1897 0/0:36,0:36:99:0,108,1297 0/0:68,0:68:99:0,174,2091 0/0:84,0:84:99:0,226,2769 0/0:60,0:60:99:0,165,1938 0/0:65,0:66:99:0,177,2118 0/0:106,0:106:99:0,283,3622 0/0:54,0:54:99:0,147,1871 0/0:75,0:75:99:0,193,2471 0/1:23,14:37:99:355,0,640 0/0:49,0:49:99:0,135,1615 0/0:51,0:51:99:0,135,1657 0/0:36,1:37:68.85:0,69,1168 0/0:42,0:42:99:0,123,1446 0/0:39,0:39:99:0,108,1307 0/0:89,0:89:99:0,235,2871 0/0:68,0:68:99:0,171,2093 0/0:35,0:35:99:0,102,1279 0/0:44,0:44:99:0,120,1450 0/0:52,0:52:99:0,138,1692 0/0:65,1:66:99:0,162,1931 0/0:44,1:45:99:0,123,1440 0/0:35,0:35:99:0,99,1182 0/0:43,0:43:99:0,120,1421 0/0:37,0:37:96.26:0,96,1147 0/0:47,0:47:99:0,129,1562 19 17088299 . T C 18901.98 . AC=32;AF=0.381;AN=84;BaseQRankSum=-12.075;DP=1958;Dels=0.00;FS=2.176;HRun=0;HaplotypeScore=1.2679;InbreedingCoeff=-0.2115;MQ=52.90;MQ0=21;MQRankSum=-19.963;QD=14.30;ReadPosRankSum=-1.402 GT:AD:DP:GQ:PL 0/1:10,19:29:99:414,0,238 0/0:46,0:46:99:0,120,1454 0/1:11,17:28:99:448,0,310 1/1:0,74:74:99:2325,202,0 0/1:29,46:76:99:1292,0,794 1/1:0,52:53:99:1591,132,0 1/1:0,50:50:99:1620,138,0 0/1:28,25:53:99:664,0,745 0/0:33,0:33:99:0,99,1186 0/0:32,0:32:93.28:0,93,1126 0/0:41,0:41:99:0,111,1341 0/1:25,16:41:99:350,0,709 0/0:24,0:24:69.19:0,69,812 0/1:16,20:36:99:418,0,489 0/0:137,0:138:99:0,370,4431 0/0:36,0:36:99:0,108,1270 0/1:19,19:38:99:453,0,560 0/1:17,5:22:67.39:67,0,557 0/1:32,40:72:99:842,0,885 0/0:62,0:62:99:0,178,2112 0/1:49,30:79:99:697,0,1366 0/0:46,0:46:99:0,129,1532 0/1:38,53:91:99:1444,0,1081 0/1:28,18:46:99:384,0,785 0/1:22,30:52:99:717,0,528 0/1:22,12:34:99:243,0,667 0/1:14,7:21:99:152,0,445 0/1:18,25:43:99:603,0,471 0/1:17,13:30:99:227,0,508 0/0:36,0:36:99:0,102,1232 0/0:22,1:23:66.20:0,66,799 0/1:45,24:69:99:473,0,1274 0/1:23,23:46:99:435,0,618 0/1:31,19:50:99:363,0,895 0/1:22,12:34:99:248,0,616 0/0:53,0:53:99:0,153,1836 0/1:24,37:61:99:850,0,681 0/0:29,0:29:87.25:0,87,1023 0/1:17,17:34:99:424,0,484 0/1:15,14:29:99:329,0,460 1/1:1,30:31:47.76:828,48,0 0/0:36,1:37:67.52:0,68,1202 19 17088319 . G T 10755.82 . AC=21;AF=0.250;AN=84;BaseQRankSum=8.469;DP=1639;Dels=0.00;FS=5.295;HRun=1;HaplotypeScore=1.0238;InbreedingCoeff=-0.0794;MQ=52.40;MQ0=22;MQRankSum=-8.913;QD=14.94;ReadPosRankSum=0.316 GT:AD:DP:GQ:PL 0/1:7,18:25:99:507,0,148 0/0:39,0:39:99:0,102,1213 0/1:11,12:23:99:341,0,322 1/1:0,58:58:99:1862,159,0 0/1:27,41:69:99:1180,0,753 1/1:0,42:42:99:1222,99,0 0/1:22,16:38:99:380,0,625 0/1:23,24:47:99:633,0,699 0/0:32,0:32:93.24:0,93,1082 0/0:30,0:30:87.26:0,87,1027 0/0:35,0:35:99:0,99,1164 0/0:29,0:29:81.22:0,81,928 0/0:17,0:17:51.14:0,51,586 0/0:32,0:32:84.24:0,84,986 0/0:110,0:110:99:0,310,3621 0/0:32,0:32:84.23:0,84,1001 0/1:20,18:38:99:465,0,566 0/1:17,5:22:75.63:76,0,543 0/1:29,31:60:99:676,0,750 0/0:55,0:55:99:0,156,1851 0/0:60,0:60:99:0,165,1863 0/0:40,0:40:99:0,108,1291 0/1:32,32:64:99:949,0,968 0/0:34,0:34:84.21:0,84,1054 0/0:39,0:39:99:0,102,1264 0/1:22,7:29:99:141,0,620 0/1:11,5:16:99:118,0,329 0/1:21,22:43:99:610,0,520 0/1:15,12:28:99:267,0,413 0/0:26,0:26:75.22:0,75,896 0/0:19,0:19:54.15:0,54,638 0/0:61,0:61:99:0,165,1969 0/0:42,0:42:99:0,111,1307 0/1:21,14:35:99:336,0,611 0/1:16,12:28:99:330,0,459 0/0:45,0:46:99:0,126,1440 0/0:64,0:64:99:0,177,2050 0/0:24,0:24:60.15:0,60,668 0/0:28,0:28:78.21:0,78,887 0/1:15,11:26:99:285,0,411 0/1:16,13:29:99:378,0,391 0/0:25,0:25:72.17:0,72,816 19 17100497 . T TG 33.20 . AC=4;AF=0.048;AN=84;BaseQRankSum=2.746;DP=1955;FS=498.303;HRun=5;HaplotypeScore=140.7477;InbreedingCoeff=-0.0713;MQ=52.98;MQ0=19;MQRankSum=2.273;QD=0.35;ReadPosRankSum=-7.903 GT:AD:DP:GQ:PL 0/0:22,0:22:36.07:0,36,383 0/0:24,1:24:54.11:0,54,572 0/0:21,0:20:44.39:0,44,481 0/0:136,0:131:99:0,108,2304 0/0:133,0:129:99:0,202,2501 0/0:105,0:100:99:0,167,2193 0/0:71,0:69:81.62:0,82,1399 0/0:83,0:78:99:0,162,1723 0/0:27,0:27:57.13:0,57,612 0/1:22,0:21:48.97:49,0,188 0/0:28,0:28:24.16:0,24,415 0/1:19,0:19:16.35:16,0,345 0/0:22,0:22:16.36:0,16,387 0/0:28,0:25:54.11:0,54,569 0/0:78,0:73:89.22:0,89,1119 0/0:42,0:42:75.64:0,76,803 0/0:29,0:29:2.80:0,0,531 0/0:31,0:29:27.90:0,28,522 0/0:40,0:39:75.17:0,75,804 0/0:58,0:58:99:0,105,1128 0/0:45,8:49:37.66:0,38,930 0/0:29,0:29:51.11:0,51,544 0/0:136,0:128:99:0,136,2439 0/0:51,0:49:28.52:0,29,787 0/0:84,0:76:99:0,111,1421 0/0:71,0:69:99:0,125,1441 0/0:28,0:28:57.13:0,57,609 0/0:26,0:26:4.60:0,5,294 0/0:25,0:25:23.55:0,24,488 0/1:26,0:25:13.29:13,0,312 0/0:32,0:30:33.45:0,33,568 0/0:67,0:66:99:0,105,1383 0/0:40,0:37:20.05:0,20,476 0/1:29,0:27:44.87:45,0,274 0/0:24,0:23:39.41:0,39,447 0/0:27,0:27:28.25:0,28,485 0/0:52,0:47:57.28:0,57,842 0/0:33,0:31:0.82:7,0,486 0/0:30,0:28:48.10:0,48,514 0/0:27,0:26:27.48:0,27,521 0/0:26,0:24:28.90:0,29,289 0/0:19,0:18:33.07:0,33,355 19 17100503 . A G 103.54 . AC=3;AF=0.036;AN=84;BaseQRankSum=-11.047;DP=1813;Dels=0.00;FS=695.852;HRun=5;HaplotypeScore=1.7781;InbreedingCoeff=-0.0728;MQ=53.14;MQ0=20;MQRankSum=2.995;QD=1.42;ReadPosRankSum=-12.668 GT:AD:DP:GQ:PL 0/0:14,5:19:39.11:0,39,467 0/0:20,4:24:51.13:0,51,594 0/0:19,2:21:29.50:0,29,614 0/0:94,30:124:99:0,164,2929 0/0:90,34:125:99:0,194,2822 0/0:79,25:104:99:0,201,2651 0/0:52,16:68:48.02:0,48,1547 0/0:60,14:74:99:0,171,2055 0/0:23,3:26:69.17:0,69,793 0/1:13,7:20:57.61:58,0,269 0/0:19,4:23:50.37:0,50,587 0/0:16,4:20:3.67:0,4,378 0/0:14,8:22:38.15:0,38,448 0/0:21,5:26:35.48:0,35,633 0/0:54,19:74:99:0,116,1374 0/0:33,6:39:66.66:0,67,1088 0/0:20,7:27:21.04:0,21,632 0/0:21,6:28:47.60:0,48,525 0/0:34,2:36:90.27:0,90,1105 0/0:39,12:51:80.59:0,81,1174 0/0:46,3:49:99:0,108,1283 0/0:22,6:28:60.18:0,60,708 0/0:95,32:127:46.62:0,47,2805 0/0:34,15:49:0.89:6,0,982 0/0:58,18:76:81.80:0,82,1631 0/0:55,11:66:99:0,153,1724 0/0:26,2:28:66.18:0,66,773 0/0:13,9:22:2.67:0,3,352 0/0:20,6:26:30.67:0,31,668 0/0:21,4:25:1.20:5,0,549 0/0:27,4:31:40.66:0,41,804 0/0:49,14:63:99:0,141,1589 0/0:22,11:33:21.02:0,21,585 0/1:14,11:25:83.32:83,0,356 0/0:15,7:22:42.59:0,43,498 0/0:20,4:24:29.50:0,29,619 0/0:34,9:43:29.17:0,29,971 0/1:20,8:28:35.23:35,0,424 0/0:22,6:28:51.14:0,51,597 0/0:22,5:27:61.98:0,62,708 0/0:16,8:24:0.85:0,1,359 0/0:16,1:18:45.09:0,45,511 19 17100552 . A G 18100.09 . AC=37;AF=0.440;AN=84;BaseQRankSum=8.157;DP=1439;Dels=0.00;FS=27.664;HRun=2;HaplotypeScore=0.8878;InbreedingCoeff=0.0769;MQ=50.99;MQ0=16;MQRankSum=-14.383;QD=18.47;ReadPosRankSum=3.231 GT:AD:DP:GQ:PL 0/1:9,13:22:99:331,0,281 0/0:20,0:20:54.13:0,54,659 0/1:10,10:20:99:268,0,257 1/1:0,79:79:99:2601,220,0 1/1:0,69:69:99:2256,184,0 0/1:43,29:72:99:699,0,1331 1/1:0,34:34:90.24:1076,90,0 0/0:51,0:51:99:0,141,1800 0/0:25,0:25:69.20:0,69,830 0/1:6,15:21:99:304,0,143 0/0:24,0:24:72.19:0,72,855 0/1:10,9:19:99:246,0,320 0/0:18,0:18:54.17:0,54,665 0/1:13,8:21:99:172,0,389 0/1:29,29:59:99:622,0,856 0/1:15,11:26:99:283,0,485 0/1:13,9:22:99:156,0,410 0/0:20,0:20:60.19:0,60,738 0/0:44,0:44:99:0,126,1542 0/0:32,0:32:90.28:0,90,1126 0/0:48,0:48:99:0,132,1642 0/0:29,0:29:81.24:0,81,989 1/1:0,97:98:99:3163,256,0 0/1:33,16:49:99:288,0,1064 0/1:29,39:68:99:1022,0,901 0/0:44,1:45:92.96:0,93,1528 1/1:0,17:17:42.13:516,42,0 1/1:0,24:24:66.17:738,66,0 0/1:12,4:16:99:101,0,390 0/1:8,12:20:99:259,0,232 0/0:16,0:16:48.14:0,48,578 0/0:56,0:56:99:0,147,1852 1/1:1,26:27:60.15:666,60,0 0/1:15,11:26:99:160,0,484 1/1:0,17:17:45.13:539,45,0 0/0:30,1:31:62.57:0,63,1013 0/1:29,17:46:99:318,0,869 0/1:13,9:22:99:137,0,412 0/1:12,14:26:99:369,0,329 0/1:8,13:21:99:241,0,243 1/1:1,19:20:9.54:484,10,0 0/1:13,6:19:82.75:83,0,390 19 17113147 . A G 1848.42 . AC=14;AF=0.167;AN=84;BaseQRankSum=1.331;DP=678;Dels=0.00;FS=2.150;HRun=0;HaplotypeScore=0.5023;InbreedingCoeff=0.1393;MQ=57.22;MQ0=0;MQRankSum=-0.748;QD=13.30;ReadPosRankSum=-0.119 GT:AD:DP:GQ:PL 0/0:16,0:17:45.14:0,45,554 0/0:16,0:16:45.13:0,45,540 0/0:10,0:10:30.09:0,30,353 0/0:16,0:16:42.12:0,42,510 0/0:16,0:16:33.11:0,33,438 0/0:10,0:10:27.09:0,27,344 0/1:7,2:9:56.82:57,0,183 0/1:3,5:8:87.65:163,0,88 0/1:7,6:13:99:148,0,179 0/0:15,0:15:42.10:0,42,487 1/1:0,19:19:39.11:470,39,0 0/0:14,0:14:39.10:0,39,463 0/0:14,0:14:36.11:0,36,446 0/0:17,0:17:48.14:0,48,579 0/0:64,0:64:99:0,156,1897 0/0:11,0:11:30.07:0,30,359 0/0:21,0:21:51.16:0,51,647 0/0:18,0:18:48.15:0,48,595 0/0:25,0:25:63.17:0,63,772 0/0:25,0:25:66.20:0,66,816 0/0:35,0:35:93.27:0,93,1155 0/0:17,0:17:51.15:0,51,611 0/0:22,0:22:54.17:0,54,696 0/1:7,4:11:83.38:83,0,191 1/1:0,9:9:18.06:236,18,0 0/0:6,0:6:15.05:0,15,188 0/0:15,0:15:36.10:0,36,437 0/0:13,0:13:30.10:0,30,394 0/1:5,3:8:50.75:51,0,159 0/0:12,0:12:36.11:0,36,432 0/0:10,0:10:27.09:0,27,342 0/0:20,0:20:48.15:0,48,621 0/1:6,2:8:47.18:47,0,182 0/0:18,0:18:51.15:0,51,630 0/0:15,0:15:42.10:0,42,496 0/0:19,0:19:48.12:0,48,569 0/1:7,10:17:99:245,0,158 0/0:10,0:10:27.08:0,27,334 0/1:6,8:14:99:185,0,155 0/1:2,5:7:36.22:155,0,36 0/0:18,0:18:48.14:0,48,575 0/1:10,6:16:99:175,0,289 19 17132902 . G A 4.26 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.166;DP=479;Dels=0.00;FS=2.971;HRun=0;HaplotypeScore=0.3831;InbreedingCoeff=-0.0151;MQ=46.35;MQ0=22;MQRankSum=0.706;QD=0.47;ReadPosRankSum=-0.760 GT:AD:DP:GQ:PL 0/0:10,0:10:27.08:0,27,317 0/0:12,0:12:30.09:0,30,369 0/0:9,0:9:27.08:0,27,311 0/0:14,0:14:33.10:0,33,429 0/0:5,0:5:15.05:0,15,187 0/0:8,0:8:21.06:0,21,246 0/0:10,0:10:30.08:0,30,364 0/0:11,0:11:30.08:0,30,362 0/0:15,0:15:39.11:0,39,463 0/0:8,0:8:21.06:0,21,242 0/0:8,0:8:24.06:0,24,271 0/0:10,0:10:27.08:0,27,313 0/0:10,0:10:30.08:0,30,337 0/0:8,0:8:18.05:0,18,217 0/0:38,0:38:87.24:0,87,1011 0/0:11,0:11:30.08:0,30,339 0/0:8,0:8:24.05:0,24,257 0/0:6,0:6:15.04:0,15,168 0/0:15,0:15:45.11:0,45,499 0/0:23,0:23:60.15:0,60,678 0/0:15,0:15:33.10:0,33,395 0/0:16,0:16:45.12:0,45,505 0/0:15,0:15:42.13:0,42,515 0/0:6,0:6:18.05:0,18,210 0/0:9,0:9:18.05:0,18,229 0/0:9,0:9:21.07:0,21,269 0/0:11,0:11:33.09:0,33,361 0/0:13,0:13:33.09:0,33,379 0/0:10,0:10:27.07:0,27,301 0/0:12,0:12:24.07:0,24,287 0/1:7,2:9:48.40:48,0,113 0/0:17,0:17:39.11:0,39,467 0/0:10,0:10:30.09:0,30,354 0/0:13,0:13:36.08:0,36,382 0/0:12,0:12:30.09:0,30,370 0/0:12,0:12:30.07:0,30,336 0/0:11,0:11:30.07:0,30,325 0/0:8,0:8:18.05:0,18,202 0/0:9,0:9:27.07:0,27,294 0/0:4,0:4:12.03:0,12,132 0/0:11,0:11:33.09:0,33,372 0/0:8,0:8:21.04:0,21,230 19 17170885 . C T 26148.60 . AC=31;AF=0.369;AN=84;BaseQRankSum=15.005;DP=2578;Dels=0.00;FS=32.516;HRun=0;HaplotypeScore=1.6041;InbreedingCoeff=-0.0736;MQ=59.18;MQ0=0;MQRankSum=5.962;QD=16.64;ReadPosRankSum=-1.620 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,141,1650 0/1:23,19:42:99:548,0,581 1/1:0,36:36:99:1252,102,0 1/1:0,104:104:99:3465,277,0 0/1:56,39:95:99:975,0,1588 0/0:76,0:76:99:0,211,2607 0/0:88,0:89:99:0,217,2745 0/0:86,0:86:99:0,232,2894 0/0:60,0:60:99:0,156,1769 0/1:25,14:39:99:381,0,672 0/0:35,0:35:96.27:0,96,1116 0/1:19,20:39:99:609,0,457 0/1:29,15:44:99:423,0,799 0/0:52,0:52:99:0,144,1654 0/1:91,74:166:99:2013,0,2332 1/1:0,43:43:99:1468,120,0 0/1:31,25:56:99:740,0,799 0/1:34,17:51:99:488,0,949 0/0:98,1:99:99:0,204,2780 0/1:48,30:78:99:809,0,1206 0/1:39,42:81:99:1108,0,922 0/0:49,0:50:99:0,126,1454 0/1:63,48:111:99:1269,0,1760 0/0:65,0:65:99:0,175,2148 0/0:65,0:65:99:0,178,2169 0/1:27,30:57:99:786,0,706 0/1:21,19:40:99:569,0,532 0/1:28,19:47:99:522,0,782 0/1:18,19:37:99:560,0,442 0/1:14,16:30:99:462,0,360 0/1:21,20:41:99:601,0,569 1/1:0,86:86:99:2774,217,0 1/1:0,43:44:99:1465,120,0 0/0:41,0:41:99:0,120,1365 0/1:26,22:48:99:646,0,700 0/1:28,29:57:99:832,0,746 0/0:96,0:98:99:0,238,2775 0/1:19,25:44:99:762,0,507 0/1:33,22:55:99:622,0,829 0/0:41,0:41:99:0,114,1280 0/0:43,0:43:99:0,114,1296 0/0:54,0:54:99:0,153,1749 19 17283657 . C T 6112.36 . AC=10;AF=0.119;AN=84;BaseQRankSum=9.839;DP=2067;Dels=0.00;FS=0.962;HRun=1;HaplotypeScore=1.8423;InbreedingCoeff=-0.1351;MQ=59.28;MQ0=0;MQRankSum=-0.249;QD=13.58;ReadPosRankSum=-0.186 GT:AD:DP:GQ:PL 0/0:30,0:30:87.20:0,87,953 0/1:22,22:44:99:597,0,590 0/1:12,16:28:99:482,0,283 0/0:148,0:148:99:0,421,5055 0/0:104,0:104:99:0,295,3527 0/1:40,45:85:99:1391,0,1060 0/1:36,22:58:99:612,0,999 0/0:75,0:75:99:0,214,2524 0/1:23,11:34:99:257,0,642 0/0:24,0:24:69.16:0,69,757 0/1:7,16:23:99:470,0,139 0/1:18,13:31:99:346,0,499 0/1:19,6:25:99:137,0,554 0/0:42,0:42:99:0,117,1313 0/0:97,0:97:99:0,262,2883 0/0:44,0:44:99:0,117,1275 0/0:40,0:40:99:0,105,1165 0/0:26,0:26:78.20:0,78,869 0/0:65,0:65:99:0,174,1988 0/0:59,0:59:99:0,162,1824 0/0:52,0:52:99:0,138,1588 0/0:47,0:47:99:0,126,1445 0/0:136,0:136:99:0,382,4590 0/1:25,27:52:99:805,0,751 0/1:35,35:70:99:1016,0,1040 0/0:48,0:48:99:0,141,1704 0/0:30,0:30:87.22:0,87,964 0/0:26,0:26:72.16:0,72,774 0/0:28,0:28:84.20:0,84,929 0/0:44,0:44:99:0,123,1379 0/0:32,0:33:87.21:0,87,955 0/0:62,0:62:99:0,168,1895 0/0:58,0:58:99:0,159,1812 0/0:40,0:40:99:0,105,1197 0/0:26,0:26:78.20:0,78,867 0/0:26,0:26:75.18:0,75,816 0/0:51,0:52:99:0,147,1568 0/0:35,0:35:99:0,102,1157 0/0:33,0:34:93.25:0,93,1039 0/0:28,0:28:81.21:0,81,914 0/0:26,0:26:63.12:0,63,712 0/0:32,0:32:87.23:0,87,976 19 17301935 . G A 1181.75 . AC=4;AF=0.048;AN=84;BaseQRankSum=-9.105;DP=986;Dels=0.00;FS=1.162;HRun=0;HaplotypeScore=0.4695;InbreedingCoeff=-0.0505;MQ=58.63;MQ0=0;MQRankSum=-0.108;QD=13.74;ReadPosRankSum=1.126 GT:AD:DP:GQ:PL 0/0:20,0:20:60.19:0,60,761 0/0:21,0:21:60.17:0,60,745 0/0:13,0:13:33.11:0,33,437 0/0:23,0:23:69.23:0,69,926 0/1:6,5:11:99:115,0,211 0/0:23,0:23:54.18:0,54,759 0/0:20,0:20:51.17:0,51,696 0/0:14,0:14:39.13:0,39,527 0/0:24,0:24:69.19:0,69,869 0/0:20,0:20:54.17:0,54,695 0/0:25,0:25:69.22:0,69,878 0/0:12,0:12:36.11:0,36,453 0/0:23,0:23:54.17:0,54,706 0/0:16,0:16:48.14:0,48,601 0/0:78,0:78:99:0,205,2603 0/0:13,0:13:39.13:0,39,496 0/0:19,0:19:54.17:0,54,691 0/0:19,0:19:57.18:0,57,717 0/0:37,0:37:99:0,99,1276 0/0:43,0:43:99:0,117,1508 0/0:39,0:39:99:0,105,1324 0/0:32,0:32:87.26:0,87,1086 0/0:26,0:26:66.22:0,66,917 0/0:13,0:13:36.11:0,36,483 0/0:14,1:15:14.55:0,15,528 0/0:15,0:15:45.15:0,45,613 0/0:19,0:19:57.16:0,57,709 0/0:20,0:20:60.19:0,60,760 0/0:19,0:20:51.16:0,51,643 0/0:14,0:14:42.13:0,42,536 0/0:31,0:31:87.28:0,87,1111 0/0:29,0:29:81.26:0,81,1039 0/0:25,0:25:72.22:0,72,892 0/0:20,0:20:54.17:0,54,700 0/0:18,0:18:54.17:0,54,671 0/0:25,0:25:63.20:0,63,810 0/0:44,0:46:99:0,123,1570 0/1:12,16:28:99:462,0,322 0/0:15,0:15:39.12:0,39,504 0/1:11,12:23:99:333,0,345 0/1:11,13:24:99:359,0,310 0/0:15,0:15:45.14:0,45,574 19 17312992 . C T 13699.11 . AC=33;AF=0.393;AN=84;BaseQRankSum=5.989;DP=1273;Dels=0.00;FS=5.522;HRun=1;HaplotypeScore=0.8750;InbreedingCoeff=-0.1482;MQ=58.66;MQ0=0;MQRankSum=0.577;QD=15.57;ReadPosRankSum=2.333 GT:AD:DP:GQ:PL 0/1:17,11:28:99:287,0,450 0/0:26,0:26:75.21:0,75,864 0/0:23,0:23:63.16:0,63,699 0/0:32,0:32:81.22:0,81,989 0/0:25,0:25:69.16:0,69,803 0/1:13,5:18:99:121,0,335 0/1:5,12:17:99:332,0,119 0/0:20,0:20:51.16:0,51,650 0/1:18,13:31:99:312,0,441 1/1:0,24:24:66.19:791,66,0 0/1:15,7:22:99:172,0,423 0/1:14,14:28:99:356,0,356 0/1:8,8:16:99:241,0,196 0/0:35,0:35:96.22:0,96,1078 0/1:45,33:78:99:851,0,965 0/1:20,15:35:99:421,0,567 0/1:17,15:33:99:439,0,405 0/0:30,1:31:51.10:0,51,920 0/1:28,23:51:99:480,0,704 0/1:33,22:56:99:543,0,909 1/1:0,41:41:99:1247,102,0 0/1:25,8:34:99:196,0,680 0/1:14,8:22:99:238,0,386 0/0:18,0:18:48.14:0,48,603 0/0:29,0:29:72.19:0,72,859 0/0:9,0:9:21.05:0,21,241 0/0:24,0:24:60.14:0,60,679 0/1:14,12:26:99:262,0,409 0/0:28,0:28:75.18:0,75,838 1/1:0,34:34:96.30:1172,96,0 0/1:11,11:22:99:309,0,237 1/1:0,51:51:99:1611,129,0 0/1:27,16:43:99:382,0,634 0/1:14,13:27:99:374,0,353 0/1:11,12:23:99:334,0,273 1/1:0,24:24:69.20:832,69,0 0/0:61,0:62:99:0,141,1641 0/0:31,0:31:81.22:0,81,946 0/1:14,16:30:99:422,0,393 0/1:16,15:31:99:431,0,426 0/1:9,9:18:99:261,0,198 0/1:6,11:17:99:282,0,150 19 17313055 . G A 812.07 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.842;DP=671;Dels=0.00;FS=9.443;HRun=1;HaplotypeScore=0.2174;InbreedingCoeff=-0.0266;MQ=58.50;MQ0=0;MQRankSum=1.752;QD=16.24;ReadPosRankSum=-1.225 GT:AD:DP:GQ:PL 0/0:13,0:13:36.11:0,36,433 0/0:24,0:24:66.20:0,66,812 0/0:16,0:16:39.12:0,39,501 0/0:13,0:13:39.12:0,39,494 0/0:12,0:12:36.11:0,36,458 0/0:6,0:6:18.06:0,18,242 0/0:6,0:6:18.06:0,18,231 0/0:10,0:10:30.10:0,30,403 0/0:7,0:7:21.07:0,21,264 0/0:15,0:15:42.13:0,42,513 0/0:21,0:21:63.18:0,63,756 0/0:18,0:18:54.17:0,54,656 0/0:10,0:10:30.09:0,30,368 0/0:15,0:15:45.13:0,45,538 0/1:16,19:35:99:563,0,483 0/0:20,0:20:60.18:0,60,724 0/1:5,10:15:99:312,0,141 0/0:19,0:19:57.17:0,57,688 0/0:33,0:33:93.28:0,93,1130 0/0:34,0:34:99:0,102,1226 0/0:26,0:26:75.23:0,75,926 0/0:23,0:23:66.18:0,66,803 0/0:11,0:11:33.11:0,33,436 0/0:9,0:9:24.08:0,24,312 0/0:6,0:6:18.06:0,18,237 0/0:3,0:3:9.03:0,9,120 0/0:13,0:13:36.11:0,36,442 0/0:14,0:14:36.11:0,36,434 0/0:15,0:15:45.13:0,45,542 0/0:20,0:20:60.19:0,60,734 0/0:17,0:17:48.14:0,48,579 0/0:13,0:13:39.12:0,39,482 0/0:21,0:21:63.19:0,63,768 0/0:10,0:10:30.09:0,30,373 0/0:11,0:11:33.10:0,33,403 0/0:18,0:18:51.15:0,51,610 0/0:34,0:34:90.28:0,90,1120 0/0:16,0:16:48.15:0,48,580 0/0:11,0:11:33.10:0,33,406 0/0:12,0:12:36.11:0,36,442 0/0:11,0:11:33.10:0,33,401 0/0:15,0:15:45.13:0,45,538 19 17316782 . T C 9283.01 . AC=34;AF=0.405;AN=84;BaseQRankSum=10.196;DP=878;Dels=0.00;FS=11.688;HRun=0;HaplotypeScore=0.7631;InbreedingCoeff=-0.1785;MQ=58.76;MQ0=1;MQRankSum=-1.500;QD=15.84;ReadPosRankSum=0.857 GT:AD:DP:GQ:PL 0/1:9,5:14:99:154,0,212 0/1:13,2:16:5.68:6,0,375 0/0:9,0:9:24.07:0,24,287 0/0:46,0:46:99:0,129,1506 0/0:45,0:45:99:0,117,1411 0/1:20,22:42:99:570,0,525 0/1:17,6:23:99:156,0,522 0/0:35,0:35:78.23:0,78,987 0/1:9,9:18:99:285,0,184 1/1:0,11:11:33.09:396,33,0 0/1:11,6:17:99:177,0,308 0/1:5,4:9:99:132,0,116 0/1:4,10:14:84.79:311,0,85 0/0:15,0:16:45.11:0,45,528 0/1:22,13:35:99:369,0,623 0/1:17,12:29:99:291,0,454 0/1:4,5:9:99:152,0,113 0/0:6,0:6:18.05:0,18,216 0/1:8,13:21:99:357,0,144 0/1:12,19:32:99:504,0,310 1/1:0,27:28:81.25:996,81,0 0/1:13,9:22:99:235,0,393 0/1:27,15:44:99:400,0,717 0/0:19,0:19:48.14:0,48,584 0/0:23,0:23:60.17:0,60,722 0/0:26,0:26:66.16:0,66,797 0/0:14,0:14:42.12:0,42,495 0/1:6,5:11:99:126,0,179 0/0:15,0:16:45.14:0,45,541 1/1:0,15:15:42.10:508,42,0 0/1:14,8:22:99:220,0,387 1/1:0,26:26:69.21:856,69,0 0/1:8,15:23:99:435,0,189 0/1:6,8:14:99:248,0,135 0/1:8,9:17:99:201,0,187 1/1:0,17:17:39.12:502,39,0 0/0:19,0:20:51.15:0,51,621 0/0:17,0:17:42.13:0,42,519 0/1:10,11:21:99:240,0,233 0/1:5,4:9:99:108,0,150 0/1:5,4:10:98.58:99,0,158 0/1:9,8:17:99:250,0,257 19 17330035 . T G 1115.11 . AC=36;AF=0.429;AN=84;BaseQRankSum=-5.898;DP=1373;Dels=0.00;FS=417.035;HRun=3;HaplotypeScore=3.1424;InbreedingCoeff=-0.7281;MQ=56.73;MQ0=1;MQRankSum=5.774;QD=0.91;ReadPosRankSum=-11.039 GT:AD:DP:GQ:PL 0/0:9,8:21:5.48:0,5,64 0/1:7,5:16:54.89:55,0,104 0/1:9,3:16:10.65:11,0,113 0/1:26,27:77:64.86:65,0,467 0/1:23,32:68:99:169,0,240 0/1:21,17:39:35.44:35,0,204 0/1:11,17:34:37.78:38,0,136 0/1:12,11:29:39.75:40,0,158 0/1:8,12:27:21.35:21,0,185 0/1:7,10:21:35.25:35,0,112 0/0:10,5:20:21.01:0,21,206 0/1:12,8:25:28.17:28,0,221 0/1:7,11:23:12.66:13,0,97 0/1:5,7:18:16.52:17,0,112 0/1:31,30:89:87.66:88,0,505 0/1:9,7:22:8.65:9,0,133 0/1:9,9:22:43.68:44,0,188 0/1:10,3:21:9.67:10,0,122 0/1:16,20:47:99:106,0,304 0/1:33,14:62:5.79:6,0,597 0/1:21,12:42:40.52:41,0,417 0/0:21,12:40:5.55:0,6,340 0/1:16,27:63:41.09:41,0,165 0/1:13,12:30:81.75:82,0,185 0/1:7,16:35:8.66:9,0,119 0/1:22,18:48:35.56:36,0,332 0/1:7,7:21:18.57:19,0,80 0/0:11,10:24:2.72:1,0,239 0/0:8,9:19:18.01:0,18,183 0/1:8,8:18:28.10:28,0,179 0/1:7,5:16:10.54:11,0,150 0/1:25,19:50:18.71:19,0,502 0/1:13,16:36:3.62:4,0,193 0/1:8,8:19:13.53:14,0,141 0/1:13,11:28:63.81:64,0,110 0/1:7,11:23:47.12:47,0,71 0/1:21,16:47:34.65:35,0,415 0/1:14,13:32:5.46:5,0,220 0/1:10,6:21:18.94:19,0,139 0/1:9,7:21:12.39:12,0,175 0/0:10,7:18:24.05:0,24,261 0/1:11,7:25:7.29:7,0,236 19 17330060 . T C 40652.92 . AC=84;AF=1.000;AN=84;DP=1264;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5772;InbreedingCoeff=-0.0000;MQ=56.22;MQ0=1;QD=32.16 GT:AD:DP:GQ:PL 1/1:0,20:20:57.12:609,57,0 1/1:0,19:19:57.13:596,57,0 1/1:0,13:13:36.09:378,36,0 1/1:0,62:62:99:2138,184,0 1/1:0,51:51:99:1782,153,0 1/1:0,42:42:99:1325,114,0 1/1:0,30:30:87.24:1027,87,0 1/1:0,31:31:90.25:1041,90,0 1/1:0,24:24:72.18:780,72,0 1/1:0,15:15:42.10:457,42,0 1/1:0,25:25:75.15:793,75,0 1/1:0,25:25:72.17:773,72,0 1/1:0,21:21:63.16:686,63,0 1/1:0,20:20:60.15:654,60,0 1/1:0,84:84:99:2516,232,0 1/1:0,20:20:60.13:631,60,0 1/1:0,21:21:63.14:672,63,0 1/1:0,18:18:54.14:586,54,0 1/1:0,49:49:99:1529,141,0 1/1:0,61:61:99:1934,177,0 1/1:0,43:43:99:1359,126,0 1/1:0,34:35:96.24:1048,96,0 1/1:0,58:58:99:2056,175,0 1/1:0,27:27:75.22:894,75,0 1/1:0,30:30:87.26:1040,87,0 1/1:0,33:33:96.24:1098,96,0 1/1:0,23:23:66.14:699,66,0 1/1:0,22:22:66.18:731,66,0 1/1:0,14:14:42.11:465,42,0 1/1:0,16:16:48.11:502,48,0 1/1:0,24:24:66.13:689,66,0 1/1:0,47:47:99:1496,135,0 1/1:0,32:32:90.21:973,90,0 1/1:0,18:18:54.12:573,54,0 1/1:0,23:23:69.18:757,69,0 1/1:0,20:20:60.13:635,60,0 1/1:0,38:38:99:1249,114,0 1/1:0,30:30:87.22:951,87,0 1/1:0,21:21:60.13:637,60,0 1/1:0,23:23:69.18:761,69,0 1/1:0,15:15:39.10:447,39,0 1/1:0,21:21:63.15:684,63,0 19 17337555 . C A 1777.59 . AC=19;AF=0.238;AN=80;BaseQRankSum=-3.919;DP=269;Dels=0.00;FS=4.431;HRun=0;HaplotypeScore=0.7768;InbreedingCoeff=0.1355;MQ=58.54;MQ0=0;MQRankSum=1.137;QD=18.33;ReadPosRankSum=2.181 GT:AD:DP:GQ:PL 0/0:5,0:5:15.02:0,15,171 0/0:3,0:3:9.03:0,9,117 ./. 0/0:16,0:16:45.13:0,45,572 0/0:12,0:12:30.08:0,30,361 1/1:0,22:22:57.17:689,57,0 0/1:4,2:6:54.10:54,0,122 0/1:4,6:10:95.38:195,0,95 1/1:1,5:6:15.03:162,15,0 0/1:1,1:2:25.53:29,0,26 0/0:2,0:2:6.02:0,6,74 0/0:5,0:5:15.05:0,15,191 0/0:7,0:7:18.06:0,18,233 0/0:11,0:11:33.09:0,33,391 0/0:18,0:18:45.12:0,45,543 0/0:8,0:8:24.06:0,24,282 0/0:5,0:5:15.04:0,15,181 1/1:0,1:1:3.01:36,3,0 0/0:3,0:3:9.03:0,9,107 0/0:7,0:7:21.06:0,21,257 0/1:2,2:4:58.38:62,0,58 0/0:7,0:7:18.05:0,18,216 0/1:5,5:10:99:128,0,174 0/0:9,0:9:21.07:0,21,286 0/0:7,0:7:15.05:0,15,202 0/0:18,0:18:39.13:0,39,528 0/1:7,2:9:21.93:22,0,146 0/1:1,2:3:29.55:64,0,30 0/0:5,0:5:15.05:0,15,187 0/1:1,3:4:26.54:90,0,27 0/0:4,0:4:12.04:0,12,153 0/1:3,2:6:59.73:60,0,91 1/1:0,8:8:18.06:235,18,0 0/0:1,0:1:3.01:0,3,38 0/0:4,0:4:9.02:0,9,107 0/1:1,2:3:27.10:65,0,27 0/0:6,0:6:12.04:0,12,147 ./. 0/1:1,2:3:24.41:65,0,24 0/0:3,1:4:6.02:0,6,74 0/0:4,0:4:12.03:0,12,141 0/0:1,0:1:3.01:0,3,34 19 17337557 . G T 365.96 . 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T C 1330.80 . 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T C 16779.09 . 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T G 12460.38 . 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T C 43318.78 . AC=76;AF=0.905;AN=84;BaseQRankSum=-0.225;DP=1500;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.2155;InbreedingCoeff=-0.1053;MQ=59.05;MQ0=0;MQRankSum=-0.271;QD=28.88;ReadPosRankSum=-0.874 GT:AD:DP:GQ:PL 1/1:0,17:17:48.10:544,48,0 1/1:0,34:34:87.23:1003,87,0 1/1:0,21:21:63.16:712,63,0 1/1:0,57:57:99:1818,144,0 1/1:0,43:43:99:1576,126,0 0/1:22,21:43:99:598,0,621 0/1:17,22:39:99:605,0,455 1/1:0,43:43:99:1437,117,0 1/1:0,25:25:72.18:831,72,0 1/1:0,16:17:45.12:516,45,0 1/1:0,25:25:69.16:786,69,0 1/1:0,21:21:57.13:658,57,0 1/1:0,20:20:57.16:681,57,0 1/1:0,24:24:69.15:776,69,0 1/1:0,90:90:99:2658,229,0 1/1:0,32:32:87.24:1022,87,0 1/1:0,31:31:90.25:1035,90,0 1/1:0,26:26:72.19:851,72,0 1/1:0,54:55:99:1761,156,0 1/1:0,60:60:99:1833,156,0 1/1:0,68:68:99:2195,190,0 1/1:0,42:42:99:1380,120,0 1/1:0,65:65:99:2277,181,0 1/1:0,35:35:90.29:1175,90,0 1/1:0,36:36:99:1278,105,0 1/1:0,20:20:60.16:719,60,0 1/1:0,20:20:54.13:614,54,0 1/1:0,30:30:81.21:940,81,0 1/1:0,20:20:54.16:653,54,0 0/1:9,16:25:99:441,0,250 1/1:0,19:19:57.16:664,57,0 1/1:0,66:66:99:1987,165,0 0/1:20,11:32:99:248,0,566 0/1:14,15:29:99:422,0,387 0/1:13,12:25:99:299,0,358 1/1:1,39:40:85.63:1260,86,0 1/1:0,62:62:99:1844,162,0 1/1:0,20:20:54.15:644,54,0 0/1:22,17:39:99:404,0,661 1/1:0,32:32:87.19:981,87,0 0/1:11,16:27:99:417,0,278 1/1:0,25:25:66.18:776,66,0 19 17396577 . G A 876.93 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.112;DP=1625;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.1064;InbreedingCoeff=-0.0244;MQ=59.16;MQ0=0;MQRankSum=0.286;QD=14.38;ReadPosRankSum=2.045 GT:AD:DP:GQ:PL 0/0:26,0:26:66.19:0,66,787 0/0:34,0:34:96.27:0,96,1129 0/0:24,0:24:66.17:0,66,752 0/0:59,0:59:99:0,162,1969 0/0:56,0:56:99:0,159,1977 0/0:52,0:52:99:0,141,1715 0/0:40,0:40:99:0,111,1389 0/0:40,0:40:99:0,108,1367 0/0:19,0:19:54.12:0,54,607 0/0:14,0:14:39.11:0,39,451 0/0:32,0:32:84.21:0,84,965 0/0:22,0:22:63.16:0,63,709 0/0:23,0:23:63.16:0,63,708 0/0:24,0:24:66.16:0,66,742 0/0:89,0:89:99:0,220,2599 0/0:38,0:38:99:0,102,1200 0/0:26,0:27:75.21:0,75,860 0/0:29,0:29:84.24:0,84,964 0/0:64,0:64:99:0,171,1909 0/0:60,0:61:99:0,168,1941 0/0:60,0:60:99:0,156,1823 0/0:37,0:37:99:0,105,1164 0/0:92,0:92:99:0,256,3175 0/1:15,19:34:99:536,0,431 0/0:45,0:45:99:0,117,1461 0/1:13,14:27:99:403,0,331 0/0:19,0:19:57.16:0,57,648 0/0:30,0:30:87.23:0,87,995 0/0:31,0:31:81.22:0,81,931 0/0:26,0:26:78.21:0,78,884 0/0:22,0:22:60.15:0,60,681 0/0:69,0:69:99:0,180,2129 0/0:43,0:43:99:0,114,1313 0/0:29,0:30:78.21:0,78,898 0/0:21,0:21:54.15:0,54,624 0/0:40,0:40:99:0,105,1192 0/0:62,0:62:99:0,165,1908 0/0:34,0:34:93.24:0,93,1051 0/0:39,0:39:99:0,108,1276 0/0:30,0:30:90.25:0,90,1019 0/0:31,0:31:78.22:0,78,915 0/0:30,0:30:81.21:0,81,960 19 17417047 . C A 16.17 . 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C T 1615.45 . 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A C 807.72 . 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A G 76622.74 . 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G C 40.82 . 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G A 320 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.076;DP=1359;Dels=0.00;FS=4.826;HRun=0;HaplotypeScore=1.2046;InbreedingCoeff=-0.0120;MQ=59.20;MQ0=0;MQRankSum=0.645;QD=15.24;ReadPosRankSum=-0.700 GT:AD:DP:GQ:PL 0/0:33,0:33:84.22:0,84,1027 0/0:28,0:28:69.21:0,69,856 0/0:18,0:18:48.13:0,48,583 0/0:71,0:71:99:0,184,2331 0/0:68,0:68:99:0,169,2209 0/0:59,0:61:99:0,159,1995 0/0:38,0:38:99:0,102,1315 0/0:30,0:30:84.24:0,84,1037 0/0:19,0:19:54.16:0,54,651 0/0:30,0:30:78.21:0,78,913 0/0:28,0:28:72.21:0,72,881 0/0:27,0:27:81.23:0,81,967 0/0:20,0:20:51.16:0,51,635 0/0:18,0:18:51.14:0,51,595 0/0:71,0:71:99:0,190,2255 0/0:26,0:26:63.19:0,63,769 0/0:17,0:17:51.15:0,51,623 0/0:19,0:19:48.14:0,48,606 0/0:28,1:29:48.12:0,48,942 0/0:51,0:51:99:0,123,1524 0/0:43,0:43:99:0,111,1399 0/0:25,0:25:69.18:0,69,814 0/0:74,0:74:99:0,199,2534 0/0:36,0:38:90.27:0,90,1143 0/0:40,0:40:99:0,117,1493 0/0:29,0:29:81.26:0,81,1049 0/0:17,0:17:42.12:0,42,490 0/0:25,0:25:69.19:0,69,820 0/0:21,0:21:51.12:0,51,603 0/0:24,0:24:63.19:0,63,776 0/0:25,0:25:75.20:0,75,893 0/0:37,0:37:84.27:0,84,1086 0/0:26,0:26:72.14:0,72,836 0/0:25,0:25:69.20:0,69,812 0/0:23,0:23:57.15:0,57,701 0/0:27,0:27:69.16:0,69,829 0/0:38,0:38:99:0,102,1233 0/0:24,0:24:69.20:0,69,836 0/1:7,14:21:99:366,0,198 0/0:23,0:23:60.15:0,60,708 0/0:25,0:25:66.19:0,66,790 0/0:26,0:26:69.18:0,69,846 19 17452399 . C T 286.40 . 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G A 1425.20 . AC=6;AF=0.071;AN=84;BaseQRankSum=-7.004;DP=911;Dels=0.00;FS=7.693;HRun=1;HaplotypeScore=0.6268;InbreedingCoeff=-0.0774;MQ=58.19;MQ0=0;MQRankSum=-0.019;QD=13.45;ReadPosRankSum=2.288 GT:AD:DP:GQ:PL 0/1:8,4:12:80.81:81,0,234 0/0:22,0:22:60.19:0,60,769 0/0:15,0:15:36.12:0,36,469 0/0:41,0:41:99:0,105,1399 0/0:46,0:46:99:0,123,1619 0/0:29,0:29:72.24:0,72,1004 0/0:41,0:41:99:0,102,1348 0/0:35,0:35:87.27:0,87,1170 0/0:6,0:6:18.06:0,18,234 0/0:15,0:15:42.11:0,42,509 0/0:12,0:12:36.11:0,36,437 0/0:8,0:8:21.03:0,21,246 0/0:13,0:13:27.09:0,27,362 0/1:4,15:19:95.84:384,0,96 0/0:55,0:57:99:0,138,1759 0/0:12,0:12:36.11:0,36,454 0/0:21,0:21:54.17:0,54,694 0/0:15,0:15:42.13:0,42,514 0/0:25,0:25:66.20:0,66,825 0/1:10,11:21:99:297,0,225 0/0:30,0:30:81.21:0,81,979 0/0:19,0:19:45.14:0,45,579 0/0:41,0:41:99:0,108,1444 0/0:30,0:30:72.23:0,72,973 0/0:24,0:24:60.20:0,60,825 0/0:24,0:24:60.20:0,60,804 0/0:13,0:13:36.11:0,36,452 0/0:14,0:14:33.11:0,33,437 0/0:20,0:20:51.15:0,51,645 0/1:7,13:20:99:380,0,174 0/0:15,0:15:45.14:0,45,544 0/0:23,0:23:60.18:0,60,748 0/1:10,8:18:99:209,0,298 0/0:11,0:11:33.10:0,33,411 0/1:9,7:16:99:180,0,267 0/0:15,0:15:39.12:0,39,501 0/0:39,0:39:90.28:0,90,1153 0/0:14,0:14:42.11:0,42,498 0/0:10,0:10:27.08:0,27,326 0/0:13,0:13:27.08:0,27,346 0/0:13,0:13:36.10:0,36,436 0/0:24,0:24:66.19:0,66,815 19 17622614 . C T 519.70 . AC=20;AF=0.323;AN=62;BaseQRankSum=-0.282;DP=84;Dels=0.00;FS=9.152;HRun=1;HaplotypeScore=0.0611;InbreedingCoeff=0.1479;MQ=57.01;MQ0=0;MQRankSum=2.019;QD=14.05;ReadPosRankSum=0.246 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:38,3,0 0/0:2,0:2:6.02:0,6,68 0/0:4,0:4:9.03:0,9,113 0/1:1,1:2:27.42:27,0,34 0/1:1,2:3:32.20:70,0,32 0/1:1,2:3:25.32:70,0,25 0/0:4,0:4:12.04:0,12,147 0/0:1,0:1:3.01:0,3,37 ./. ./. 0/0:5,0:5:12.04:0,12,161 0/1:0,2:2:1.76:32,3,0 0/1:0,1:1:1.76:29,3,0 1/1:0,2:2:6.02:73,6,0 0/0:7,0:7:18.05:0,18,218 ./. ./. ./. 0/0:1,0:1:3.01:0,3,36 0/1:6,1:7:20.52:21,0,167 0/0:3,0:3:9.03:0,9,108 ./. 0/1:2,1:3:30.11:30,0,35 ./. ./. 0/0:1,0:1:3.01:0,3,32 0/0:3,0:3:6.02:0,6,70 1/1:0,1:1:3.01:38,3,0 0/0:1,0:1:3.01:0,3,39 0/1:0,1:1:1.76:38,3,0 1/1:0,1:1:3.01:39,3,0 0/1:4,2:6:57.54:58,0,134 ./. 0/0:3,0:3:9.03:0,9,115 0/0:3,0:3:9.03:0,9,115 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.03:0,9,112 1/1:0,2:2:6.02:70,6,0 0/0:1,0:1:3.01:0,3,36 ./. 0/1:1,1:2:28.34:28,0,29 ./. 19 17628587 . A G 43217.21 . AC=44;AF=0.524;AN=84;BaseQRankSum=-3.330;DP=2955;Dels=0.00;FS=2.815;HRun=0;HaplotypeScore=1.3509;InbreedingCoeff=-0.1455;MQ=58.66;MQ0=0;MQRankSum=0.879;QD=18.12;ReadPosRankSum=-1.427 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1531,132,0 0/1:34,37:72:99:1012,0,915 0/0:59,0:59:99:0,168,1994 0/1:55,57:112:99:1612,0,1546 0/1:37,57:95:99:1746,0,1060 0/1:45,49:94:99:1304,0,1206 0/0:71,0:73:99:0,190,2262 0/1:34,28:62:99:822,0,942 0/1:21,40:61:99:1099,0,493 1/1:1,44:45:94.75:1365,95,0 0/0:55,0:55:99:0,156,1818 1/1:0,49:49:99:1531,129,0 1/1:1,52:53:99:1671,116,0 1/1:0,61:61:99:1897,165,0 0/1:103,87:191:99:2181,0,2770 0/1:23,33:56:99:877,0,671 0/1:31,40:71:99:998,0,855 0/1:23,28:52:99:807,0,655 0/1:36,35:71:99:786,0,980 0/1:38,38:76:99:932,0,1050 0/0:79,0:80:99:0,229,2712 0/1:21,23:44:99:639,0,515 0/1:72,79:151:99:2371,0,2008 1/1:0,72:72:99:2375,190,0 0/1:32,43:75:99:1285,0,907 0/1:41,29:70:99:867,0,1175 1/1:0,45:45:99:1349,117,0 1/1:0,59:59:99:1896,168,0 1/1:0,59:59:99:1916,165,0 0/1:28,24:53:99:603,0,859 0/1:31,24:55:99:648,0,918 0/1:32,29:61:99:777,0,923 1/1:0,58:58:99:1823,156,0 0/0:56,0:56:99:0,162,1904 0/1:34,40:74:99:1067,0,919 0/0:69,0:69:99:0,196,2336 0/0:105,0:106:99:0,286,3425 0/1:32,34:66:99:919,0,912 0/1:19,32:51:99:796,0,502 0/1:36,42:78:99:1067,0,1023 0/1:23,22:45:99:645,0,572 0/0:70,1:72:99:0,168,2352 19 17631821 . G A 26.43 . AC=1;AF=0.012;AN=82;BaseQRankSum=-2.270;DP=284;Dels=0.00;FS=2.942;HRun=0;HaplotypeScore=0.1126;InbreedingCoeff=-0.0419;MQ=59.12;MQ0=0;MQRankSum=-0.040;QD=3.78;ReadPosRankSum=0.637 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,39 0/0:7,0:7:21.07:0,21,263 0/0:4,0:4:12.03:0,12,138 0/0:20,0:20:57.18:0,57,728 0/0:16,0:16:48.16:0,48,653 0/0:10,0:10:27.07:0,27,325 0/0:9,0:9:27.09:0,27,368 0/0:7,0:7:21.07:0,21,280 0/0:5,0:5:12.04:0,12,151 0/0:3,0:3:9.03:0,9,107 0/1:4,3:7:72.20:72,0,127 0/0:6,0:6:18.06:0,18,224 0/0:5,0:5:12.03:0,12,144 0/0:6,0:6:15.05:0,15,195 0/0:18,0:18:48.13:0,48,579 0/0:7,0:7:21.06:0,21,254 0/0:6,0:6:18.05:0,18,213 0/0:2,0:2:6.01:0,6,62 0/0:7,0:7:21.07:0,21,270 0/0:10,0:10:30.09:0,30,372 0/0:8,0:8:15.05:0,15,192 0/0:11,0:11:30.08:0,30,358 0/0:11,0:11:33.08:0,33,429 0/0:11,0:11:33.10:0,33,427 0/0:6,0:6:18.06:0,18,242 0/0:10,0:10:30.10:0,30,389 0/0:2,0:2:5.99:0,6,59 0/0:3,0:3:9.03:0,9,113 0/0:1,0:1:3.01:0,3,39 0/0:6,0:6:18.06:0,18,221 0/0:5,0:5:15.04:0,15,173 0/0:8,0:8:18.05:0,18,215 0/0:7,0:7:21.06:0,21,253 0/0:4,0:4:12.04:0,12,154 0/0:5,0:5:15.05:0,15,189 0/0:4,0:4:12.03:0,12,143 0/0:10,0:10:27.09:0,27,349 ./. 0/0:1,0:1:3.01:0,3,39 0/0:6,0:6:18.06:0,18,222 0/0:6,0:6:18.06:0,18,221 0/0:3,0:3:9.03:0,9,113 19 17648317 . T TG 1075.61 . AC=17;AF=0.202;AN=84;BaseQRankSum=-8.786;DP=2549;FS=2096.037;HRun=2;HaplotypeScore=229.7086;InbreedingCoeff=-0.2736;MQ=58.70;MQ0=0;MQRankSum=6.288;QD=1.02;ReadPosRankSum=-19.489 GT:AD:DP:GQ:PL 0/1:50,0:50:79.25:79,0,1113 0/0:45,0:45:24.46:0,24,1033 0/1:31,0:31:22.87:23,0,729 0/1:137,1:137:99:233,0,2650 0/1:83,0:83:99:108,0,1530 0/1:103,1:103:31.98:32,0,1919 0/0:72,0:72:9.16:0,9,1381 0/0:62,0:62:2.52:1,0,1143 0/1:47,0:47:35.75:36,0,837 0/1:40,0:40:11.96:12,0,908 0/0:63,0:63:22.18:0,22,1407 0/1:39,0:39:73.21:73,0,873 0/0:31,9:40:10.24:0,10,869 0/1:57,0:57:7.06:7,0,1293 0/0:137,0:137:82.89:0,83,2828 0/0:41,0:41:40.60:0,41,1039 0/1:49,0:49:44.71:45,0,1044 0/0:49,0:49:48.59:0,49,1165 0/0:69,0:69:99:0,161,1984 0/0:67,0:67:62.59:0,63,1730 0/0:74,0:74:99:0,101,1953 0/0:50,1:51:89.20:0,89,1268 0/1:116,0:116:99:300,0,1604 0/0:74,0:72:41.62:0,42,1516 0/1:74,0:70:71.52:72,0,1453 0/0:65,0:64:8.45:0,8,1048 0/1:42,0:42:79.60:80,0,779 0/1:44,0:44:40.26:40,0,848 0/0:38,4:41:43.66:0,44,1108 0/0:46,0:46:10.17:0,10,879 0/1:44,0:44:24.90:25,0,934 0/0:76,0:76:7.93:0,8,1740 0/1:52,0:52:23.97:24,0,1139 0/1:46,0:46:55.66:56,0,972 0/0:37,0:37:7.11:0,7,990 0/0:48,1:49:30.50:0,31,1135 0/0:75,0:75:96.99:0,97,2048 0/0:45,0:45:47.13:0,47,1162 0/0:50,1:51:41.24:0,41,1400 0/0:45,11:56:26.97:0,27,1247 0/0:42,0:42:68.61:0,69,1154 0/0:65,0:65:79.50:0,79,1545 19 17648319 . GCCCTGCAGGGT G 1122.46 . AC=19;AF=0.226;AN=84;BaseQRankSum=-10.086;DP=2294;FS=1858.913;HRun=0;HaplotypeScore=538.3306;InbreedingCoeff=-0.2893;MQ=59.66;MQ0=0;MQRankSum=5.401;QD=1.07;ReadPosRankSum=-20.033 GT:AD:DP:GQ:PL 0/1:46,0:46:47.43:47,0,5626 0/0:41,0:41:31.91:0,32,5319 0/1:28,0:28:22.83:23,0,3568 0/1:92,39:131:99:268,0,13659 0/1:52,21:73:98.44:98,0,8197 0/1:68,0:91:71.54:72,0,9768 0/1:49,17:66:6.58:7,0,7326 0/0:57,0:57:22.72:0,23,5963 0/1:43,0:43:20.87:21,0,4496 0/0:38,0:38:4.91:0,5,4192 0/0:58,0:58:31.28:0,31,6930 0/1:37,0:37:60.81:61,0,4586 0/0:29,0:29:61.63:0,62,3924 0/0:52,0:52:17.52:0,18,6602 0/0:112,0:112:99:0,101,13636 0/0:40,0:40:63.42:0,63,5202 0/1:42,0:42:41.52:42,0,5176 0/0:42,0:42:51.66:0,52,5525 0/0:66,0:66:99:0,174,8810 0/0:62,0:62:94.03:0,94,8498 0/0:70,0:70:99:0,113,9489 0/0:47,0:47:95.43:0,95,6000 0/1:53,37:90:99:376,0,8413 0/0:52,15:65:23.61:0,24,7582 0/1:69,0:66:56.67:57,0,7323 0/0:57,0:56:15.51:0,16,5439 0/1:37,0:37:99:101,0,4299 0/1:39,0:39:14.01:14,0,4463 0/0:38,0:37:39.47:0,39,5552 0/1:37,0:37:7.77:8,0,4327 0/1:40,0:40:24.80:25,0,4060 0/0:66,0:66:14.06:0,14,8608 0/1:53,0:53:14.87:15,0,5931 0/1:44,0:44:36.38:36,0,5094 0/1:34,0:34:12.89:13,0,4609 0/1:38,0:44:13.93:14,0,5526 0/0:69,0:69:99:0,109,9490 0/0:42,0:42:62.19:0,62,5926 0/0:44,0:49:20.38:0,20,6719 0/0:46,0:46:42.06:0,42,6510 0/0:40,0:40:71.69:0,72,5367 0/0:61,0:61:38.76:0,39,7306 19 17648350 . T C 60139.74 . AC=78;AF=0.929;AN=84;BaseQRankSum=14.186;DP=1784;Dels=0.00;FS=13.543;HRun=0;HaplotypeScore=1.2168;InbreedingCoeff=-0.0769;MQ=58.39;MQ0=0;MQRankSum=2.752;QD=33.71;ReadPosRankSum=1.143 GT:AD:DP:GQ:PL 0/1:21,12:33:99:345,0,613 0/1:32,21:53:99:537,0,901 1/1:0,17:17:51.16:639,51,0 1/1:0,76:76:99:2988,226,0 1/1:1,64:65:99:2379,148,0 1/1:0,60:60:99:2274,178,0 1/1:0,43:43:99:1704,126,0 1/1:0,39:39:99:1505,114,0 1/1:0,36:36:99:1306,105,0 0/1:20,9:29:99:220,0,608 1/1:0,42:42:99:1461,117,0 1/1:0,33:33:99:1221,99,0 0/1:9,16:25:99:505,0,231 1/1:0,38:38:99:1343,108,0 1/1:0,93:93:99:3197,256,0 1/1:0,39:39:99:1437,117,0 1/1:0,35:35:99:1290,105,0 1/1:0,26:26:78.24:967,78,0 1/1:0,65:65:99:2345,190,0 1/1:0,49:49:99:1750,141,0 1/1:0,52:52:99:1864,147,0 1/1:0,43:43:99:1554,126,0 1/1:0,65:65:99:2479,187,0 1/1:0,49:49:99:1937,147,0 1/1:0,43:43:99:1632,126,0 1/1:0,41:41:99:1515,117,0 0/1:18,11:29:99:326,0,538 1/1:0,39:39:99:1440,117,0 0/1:21,19:40:99:591,0,567 1/1:0,39:39:99:1395,114,0 1/1:0,27:28:78.24:964,78,0 1/1:0,65:65:99:2177,172,0 1/1:0,36:36:99:1306,105,0 1/1:0,39:39:99:1390,111,0 1/1:0,21:21:60.18:737,60,0 1/1:0,42:42:99:1543,123,0 1/1:0,54:54:99:1966,156,0 1/1:0,36:36:99:1319,105,0 1/1:0,36:36:99:1249,99,0 1/1:0,29:29:84.27:1053,84,0 1/1:0,24:24:69.22:864,69,0 1/1:0,38:38:99:1425,114,0 19 17650229 . C A 100.92 . AC=4;AF=0.059;AN=68;BaseQRankSum=-0.755;DP=109;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.2457;InbreedingCoeff=-0.1623;MQ=57.61;MQ0=0;MQRankSum=0.742;QD=7.21;ReadPosRankSum=1.665 GT:AD:DP:GQ:PL 0/0:3,0:3:9.03:0,9,116 0/0:2,0:2:3.01:0,3,30 ./. 0/0:2,0:2:3.01:0,3,45 0/1:3,2:5:58.26:58,0,71 0/0:2,0:2:6.02:0,6,79 0/0:3,0:3:3.01:0,3,45 ./. 0/0:3,0:3:9.03:0,9,112 0/0:3,0:3:6.02:0,6,77 0/1:1,1:2:26.48:26,0,27 0/0:3,0:3:6.02:0,6,74 0/0:1,0:1:3:0,3,29 0/0:3,0:3:9.03:0,9,109 0/0:9,0:9:24.05:0,24,272 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,33 ./. 0/0:2,0:2:6.02:0,6,76 0/0:4,0:4:9.03:0,9,121 0/0:7,0:7:15.02:0,15,166 0/0:5,0:5:15.04:0,15,177 0/0:5,0:5:12.03:0,12,144 0/1:2,1:3:29.55:30,0,72 0/0:2,0:2:6.02:0,6,74 ./. ./. 0/0:1,0:1:3.01:0,3,35 ./. 0/0:4,0:4:12.04:0,12,150 0/0:2,0:2:6.02:0,6,75 0/0:2,0:2:6.02:0,6,71 0/0:6,0:6:15.05:0,15,183 ./. 0/0:2,0:2:6.02:0,6,67 0/0:2,1:3:3.01:0,3,32 0/0:6,0:6:15.04:0,15,182 0/0:4,0:4:9.02:0,9,103 0/0:1,0:1:3.01:0,3,33 0/1:2,2:4:23.47:65,0,23 ./. 0/0:2,0:2:6.02:0,6,73 19 17662616 . G A 4638.61 . AC=10;AF=0.119;AN=84;BaseQRankSum=9.160;DP=1170;Dels=0.00;FS=12.187;HRun=0;HaplotypeScore=0.3552;InbreedingCoeff=-0.1353;MQ=58.60;MQ0=0;MQRankSum=0.297;QD=15.01;ReadPosRankSum=-1.696 GT:AD:DP:GQ:PL 0/0:11,0:11:33.09:0,33,370 0/0:13,0:13:39.10:0,39,414 0/0:20,0:20:60.15:0,60,664 0/0:74,0:74:99:0,214,2541 0/1:33,30:63:99:877,0,996 0/0:42,0:42:99:0,123,1475 0/0:47,0:47:99:0,141,1693 0/1:35,21:56:99:615,0,968 0/1:8,10:18:99:307,0,209 0/0:18,0:18:48.13:0,48,554 0/1:7,8:15:99:251,0,172 0/0:14,0:14:42.11:0,42,462 0/0:12,0:12:36.10:0,36,404 0/0:14,0:14:42.11:0,42,461 0/0:60,0:60:99:0,171,1898 0/0:16,0:16:42.11:0,42,463 0/0:18,0:18:54.14:0,54,594 0/0:11,0:11:30.06:0,30,323 0/0:38,0:38:96.25:0,96,1085 0/0:33,0:33:93.24:0,93,1050 0/0:39,0:39:99:0,111,1267 0/0:27,0:27:78.19:0,78,848 0/0:65,0:65:99:0,187,2264 0/1:15,29:44:99:935,0,399 0/0:51,0:51:99:0,135,1652 0/1:24,19:43:99:524,0,724 0/0:19,0:19:57.16:0,57,648 0/1:6,12:18:99:332,0,141 0/0:12,0:12:36.09:0,36,395 0/0:17,0:17:51.13:0,51,557 0/0:16,0:16:45.12:0,45,497 0/0:46,0:46:99:0,129,1496 0/0:19,0:19:57.15:0,57,634 0/0:10,0:10:27.06:0,27,298 0/0:15,0:15:42.10:0,42,462 0/1:8,7:15:99:209,0,204 0/0:32,0:32:84.22:0,84,930 0/0:21,0:22:60.16:0,60,692 0/0:21,0:21:60.14:0,60,656 0/1:9,11:21:99:316,0,237 0/0:8,0:8:24.06:0,24,265 0/1:7,9:16:99:272,0,197 19 17662661 . T C 518.72 . AC=21;AF=0.250;AN=84;BaseQRankSum=-6.248;DP=1094;Dels=0.00;FS=600.068;HRun=2;HaplotypeScore=0.6348;InbreedingCoeff=-0.3400;MQ=58.91;MQ0=0;MQRankSum=-0.070;QD=1.00;ReadPosRankSum=-12.298 GT:AD:DP:GQ:PL 0/0:8,4:12:21.06:0,21,245 0/0:14,3:17:36.10:0,36,406 0/1:10,4:14:9.37:9,0,219 0/1:32,33:65:88.69:89,0,841 0/1:27,27:54:96:96,0,712 0/0:28,17:45:75.22:0,75,893 0/0:28,20:48:16.91:0,17,826 0/1:22,24:46:50.69:51,0,673 0/1:16,6:22:16.30:16,0,400 0/1:5,5:10:16.30:16,0,154 0/1:7,6:13:11.29:11,0,163 0/1:9,4:13:10.97:11,0,189 0/1:7,6:13:3.60:4,0,216 0/0:15,8:23:9.47:0,9,371 0/0:49,23:72:22.30:0,22,1408 0/1:10,6:16:6.35:6,0,261 0/0:11,3:14:33.10:0,33,386 0/1:7,5:12:29.17:29,0,214 0/0:22,12:34:0.56:0,1,635 0/0:24,11:35:28.38:0,28,681 0/1:15,12:27:14.63:15,0,466 0/0:15,10:25:5.66:0,6,372 0/1:26,28:54:16.43:16,0,739 0/1:18,20:38:14.09:14,0,531 0/0:17,19:36:48.13:0,48,541 0/1:17,25:42:99:101,0,463 0/0:10,5:15:24.54:0,25,282 0/1:5,6:11:15.64:16,0,123 0/1:9,5:14:35.07:35,0,215 0/0:11,7:18:27.08:0,27,313 0/1:5,10:15:41.15:41,0,116 0/0:24,14:38:46.49:0,46,756 0/0:16,8:24:11.70:0,12,460 0/0:9,6:16:2.38:0,2,253 0/0:10,3:13:27.07:0,27,313 0/0:12,3:15:36.10:0,36,412 0/0:24,14:38:32.58:0,33,659 0/0:12,5:17:33.10:0,33,383 0/1:12,8:20:14.13:14,0,348 0/0:13,6:19:39.10:0,39,429 0/1:6,4:10:52.94:53,0,182 0/1:7,4:11:38.77:39,0,218 19 17688258 . T G 8.50 . AC=4;AF=0.049;AN=82;BaseQRankSum=-2.915;DP=173;Dels=0.00;FS=82.471;HRun=2;HaplotypeScore=0.1473;InbreedingCoeff=0.0607;MQ=57.99;MQ0=0;MQRankSum=-0.091;QD=0.65;ReadPosRankSum=-3.254 GT:AD:DP:GQ:PL 0/0:2,0:2:3.01:0,3,39 0/1:1,1:2:1.76:31,3,0 0/0:3,0:3:9.03:0,9,109 0/0:8,1:9:23.56:0,24,264 0/0:9,0:9:27.08:0,27,330 0/0:3,0:3:9.03:0,9,117 0/0:5,0:5:15.05:0,15,183 0/0:1,0:1:3.01:0,3,37 0/1:2,1:3:21.57:22,0,62 0/0:3,0:3:9.03:0,9,111 0/0:2,0:2:6.02:0,6,71 0/0:4,0:4:12.04:0,12,144 0/0:4,0:4:9.02:0,9,102 0/0:4,0:4:9.03:0,9,113 0/0:6,1:7:18.05:0,18,211 0/0:6,1:7:14.51:0,15,167 0/0:7,0:7:21.06:0,21,252 0/0:2,0:2:6.02:0,6,68 0/0:2,0:2:6.02:0,6,74 0/0:3,0:3:9.03:0,9,107 0/1:4,1:5:16.51:17,0,132 0/1:2,1:3:24.41:24,0,61 0/0:10,0:10:30.09:0,30,364 0/0:6,0:6:18.05:0,18,213 0/0:5,0:5:15.05:0,15,183 0/0:5,1:6:14.07:0,14,151 0/0:3,0:3:9.03:0,9,112 0/0:5,0:5:15.04:0,15,178 0/0:2,0:2:6:0,6,59 0/0:2,0:2:6.02:0,6,73 0/0:3,0:3:9.03:0,9,109 0/0:8,0:8:24.07:0,24,290 0/0:2,0:2:6.02:0,6,70 0/0:2,0:2:6.02:0,6,72 0/0:5,0:5:15.04:0,15,168 0/0:4,0:4:12.04:0,12,145 0/0:6,1:7:18.05:0,18,217 0/0:2,0:2:6.02:0,6,72 0/0:5,0:5:15.05:0,15,182 0/0:2,0:2:6.02:0,6,75 ./. 0/0:4,0:4:12.04:0,12,149 19 17728572 . C T 28771.25 . AC=25;AF=0.298;AN=84;BaseQRankSum=17.073;DP=4078;DS;Dels=0.00;FS=2.704;HRun=0;HaplotypeScore=2.3110;InbreedingCoeff=-0.3098;MQ=58.99;MQ0=0;MQRankSum=0.831;QD=12.82;ReadPosRankSum=1.398 GT:AD:DP:GQ:PL 0/1:34,33:67:99:939,0,873 0/1:42,42:84:99:1216,0,1044 0/0:68,0:68:99:0,192,2125 0/0:198,0:198:99:0,524,6406 0/1:81,78:160:99:2323,0,2221 0/0:145,1:146:99:0,368,4694 0/1:59,50:111:99:1325,0,1660 0/0:140,1:142:99:0,344,4518 0/0:77,0:77:99:0,189,2194 0/1:25,20:45:99:535,0,645 0/0:56,0:56:99:0,153,1711 0/0:79,0:79:99:0,208,2334 0/0:68,1:70:99:0,151,1961 0/0:77,0:77:99:0,217,2435 0/1:123,92:217:99:2388,0,2938 0/0:76,0:76:99:0,204,2281 0/1:41,33:75:99:965,0,940 0/0:67,1:69:99:0,146,1994 0/0:156,0:156:99:0,415,4614 0/1:94,53:147:99:1344,0,2445 0/1:80,61:143:99:1627,0,1910 0/1:40,45:85:99:1210,0,961 0/1:103,73:177:99:1934,0,2983 0/1:44,37:81:99:1064,0,1220 0/1:69,38:107:99:1086,0,1846 0/1:62,47:109:99:1282,0,1691 1/1:0,50:50:99:1673,141,0 0/1:34,28:63:99:750,0,878 0/1:32,24:57:99:689,0,866 0/1:37,32:70:99:842,0,955 0/1:37,29:66:99:834,0,941 0/0:160,0:160:99:0,382,4478 0/0:106,0:106:99:0,301,3323 0/1:34,31:65:99:897,0,837 0/1:37,29:67:99:805,0,938 0/1:28,42:70:99:1182,0,699 0/0:127,0:127:99:0,325,3577 0/0:78,0:78:99:0,208,2352 0/0:76,1:78:99:0,170,2208 0/1:31,35:66:99:1056,0,679 0/0:69,1:70:99:0,156,2079 0/1:34,28:63:99:805,0,885 19 17731512 . C CT 88.01 . AC=14;AF=0.179;AN=78;BaseQRankSum=-1.412;DP=949;FS=239.509;HRun=2;HaplotypeScore=61.4389;InbreedingCoeff=-0.2730;MQ=58.09;MQ0=0;MQRankSum=-0.079;QD=0.25;ReadPosRankSum=-6.413 GT:AD:DP:GQ:PL 0/0:20,1:21:1.83:3,0,247 0/0:22,0:22:24.12:0,24,383 ./.:.:6:.:0,0,0 0/1:38,0:38:26.43:26,0,527 0/0:41,0:41:60.18:0,60,739 0/0:25,1:26:27.08:0,27,335 0/1:16,0:16:8.80:9,0,196 0/0:24,1:25:27.08:0,27,334 0/0:18,7:25:3.22:0,3,330 0/1:18,1:19:9.77:10,0,202 0/0:21,0:21:18.05:0,18,223 0/0:19,0:19:21.04:0,21,236 0/1:22,0:22:10.84:11,0,168 0/0:15,0:15:26.82:0,27,307 0/1:51,1:52:14.29:14,0,759 0/1:14,0:14:6.86:7,0,189 0/0:20,0:20:21.06:0,21,255 ./.:.:12:.:0,0,0 0/0:25,0:25:20.13:0,20,314 0/0:40,0:40:27.29:0,27,659 0/0:34,1:35:45.14:0,45,558 0/1:28,0:28:9.74:10,0,400 0/1:28,17:45:7.61:8,0,507 0/0:19,1:20:24.03:0,24,270 0/0:28,0:28:20.04:0,20,346 0/0:21,0:21:1.10:0,1,234 ./.:.:4:.:0,0,0 0/0:10,0:10:3:0,3,37 0/1:17,0:17:25.76:26,0,233 0/1:23,0:23:9.83:10,0,234 0/1:15,0:15:27.75:28,0,217 0/0:34,21:55:20.43:0,20,725 0/1:16,1:17:8.82:9,0,166 0/0:14,0:14:2.66:1,0,305 0/1:17,0:17:15.79:16,0,134 0/0:18,0:18:0.95:6,0,177 0/0:30,0:30:6.24:0,6,379 0/0:19,0:19:27.08:0,27,335 0/0:14,0:14:14.63:0,15,159 0/0:16,0:16:9.02:0,9,112 0/1:7,4:11:40.70:41,0,131 0/0:13,0:13:6.01:0,6,74 19 17731515 . G T 41.66 . AC=8;AF=0.098;AN=82;BaseQRankSum=-8.038;DP=778;Dels=0.00;FS=150.392;HRun=2;HaplotypeScore=0.9915;InbreedingCoeff=-0.1566;MQ=58.60;MQ0=0;MQRankSum=-0.640;QD=0.33;ReadPosRankSum=-5.801 GT:AD:DP:GQ:PL 0/0:9,8:17:0.75:7,0,273 0/0:13,7:20:24.06:0,24,279 ./. 0/0:17,19:36:1.10:5,0,581 0/0:23,11:34:66.21:0,66,871 0/0:11,8:19:27.08:0,27,334 0/1:6,3:9:16.29:16,0,184 0/0:13,8:21:27.07:0,27,344 0/0:15,2:17:39.11:0,39,467 0/0:10,8:18:24.08:0,24,303 0/0:10,7:17:15.05:0,15,194 0/0:10,7:17:27.08:0,27,333 0/1:6,14:20:15.38:15,0,173 0/0:10,3:13:18.06:0,18,221 0/0:29,13:42:17.13:0,17,744 0/0:7,5:12:17.42:0,17,193 0/0:9,5:14:18.06:0,18,229 0/0:1,10:11:3.01:0,3,38 0/0:13,6:19:30.08:0,30,355 0/0:24,14:38:9.97:0,10,664 0/0:19,5:24:45.14:0,45,566 0/1:15,13:28:12.88:13,0,480 0/0:20,3:23:48.16:0,48,629 0/0:10,7:17:24.06:0,24,291 0/0:11,13:24:27.09:0,27,366 0/0:13,6:19:26.95:0,27,311 0/0:2,1:3:6.02:0,6,70 0/0:2,7:9:3.01:0,3,36 0/1:7,8:15:35.05:35,0,234 0/0:12,6:18:2.76:1,0,291 0/1:9,6:15:33.93:34,0,224 0/0:32,4:36:63.19:0,63,778 0/0:9,6:15:21.06:0,21,244 0/0:10,4:14:22.61:0,23,255 0/1:9,5:14:11.21:11,0,224 0/1:9,8:17:13.50:13,0,169 0/0:14,14:29:36.99:0,37,432 0/0:14,3:17:33.09:0,33,398 0/1:5,5:10:8.65:9,0,136 0/0:5,7:12:12.04:0,12,149 0/0:7,3:10:15.05:0,15,188 0/0:4,6:10:9.03:0,9,115 19 17737486 . G A 505.60 . AC=3;AF=0.036;AN=84;BaseQRankSum=4.517;DP=583;Dels=0.00;FS=2.721;HRun=0;HaplotypeScore=0.4665;InbreedingCoeff=-0.0469;MQ=58.78;MQ0=0;MQRankSum=-0.494;QD=10.32;ReadPosRankSum=-0.491 GT:AD:DP:GQ:PL 0/0:13,0:13:39.10:0,39,422 0/0:14,0:14:42.11:0,42,457 0/0:11,0:11:30.08:0,30,335 0/0:4,0:4:12.03:0,12,137 0/0:13,0:13:39.11:0,39,453 0/0:6,0:6:18.05:0,18,205 0/0:4,0:4:12.04:0,12,141 0/0:8,0:8:24.07:0,24,294 0/0:17,0:17:42.11:0,42,487 0/1:10,2:12:14.51:15,0,273 0/0:16,0:16:48.12:0,48,530 0/0:13,0:13:39.10:0,39,422 0/0:9,0:9:27.06:0,27,284 0/0:7,0:7:21.06:0,21,233 0/0:40,0:40:99:0,108,1221 0/0:21,0:21:63.16:0,63,685 0/0:8,0:8:21.05:0,21,227 0/1:3,10:13:61.12:326,0,61 0/1:14,10:24:99:238,0,358 0/0:20,0:20:54.15:0,54,606 0/0:27,0:27:78.20:0,78,862 0/0:19,0:19:51.12:0,51,539 0/0:9,0:9:27.08:0,27,319 0/0:9,0:9:27.08:0,27,314 0/0:2,0:2:6:0,6,62 0/0:7,0:7:21.06:0,21,240 0/0:9,1:10:1.42:0,1,260 0/0:18,0:18:48.09:0,48,496 0/0:12,0:12:36.08:0,36,389 0/0:8,0:8:24.05:0,24,250 0/0:12,0:12:30.07:0,30,319 0/0:35,0:35:96.25:0,96,1072 0/0:22,0:22:66.17:0,66,718 0/0:11,0:11:33.08:0,33,353 0/0:10,0:10:27.06:0,27,290 0/0:15,0:15:45.10:0,45,474 0/0:23,0:23:63.14:0,63,675 0/0:14,0:14:42.10:0,42,442 0/0:15,0:15:45.12:0,45,499 0/0:8,0:8:24.04:0,24,260 0/0:10,0:10:30.08:0,30,327 0/0:14,0:14:36.10:0,36,397 19 17740115 . G A 731.87 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.728;DP=1031;Dels=0.00;FS=10.430;HRun=1;HaplotypeScore=0.4780;InbreedingCoeff=-0.0244;MQ=59.28;MQ0=0;MQRankSum=0.163;QD=12.40;ReadPosRankSum=-1.177 GT:AD:DP:GQ:PL 0/0:19,0:19:45.15:0,45,583 0/0:17,0:17:48.14:0,48,593 0/0:22,0:22:54.17:0,54,713 0/0:31,0:31:87.27:0,87,1127 0/0:30,0:30:75.25:0,75,1035 0/0:27,0:27:66.21:0,66,896 0/0:10,0:10:27.09:0,27,373 0/0:19,0:19:51.17:0,51,682 0/0:25,0:25:60.17:0,60,753 0/0:25,0:25:66.21:0,66,846 0/0:26,0:26:69.22:0,69,906 0/0:16,0:16:45.14:0,45,554 0/0:22,0:22:60.19:0,60,755 0/0:31,0:31:81.26:0,81,1049 0/0:70,0:71:99:0,175,2281 0/0:18,0:18:51.16:0,51,654 0/0:19,0:19:48.13:0,48,611 0/1:9,13:22:99:384,0,211 0/1:20,17:37:99:411,0,539 0/0:43,0:43:99:0,111,1409 0/0:37,0:37:96.31:0,96,1243 0/0:16,0:16:45.14:0,45,575 0/0:22,0:22:54.18:0,54,754 0/0:16,0:16:42.14:0,42,564 0/0:24,0:24:60.19:0,60,815 0/0:16,0:16:39.12:0,39,520 0/0:15,0:15:39.13:0,39,514 0/0:13,0:13:36.11:0,36,454 0/0:15,0:15:45.14:0,45,562 0/0:30,0:30:75.24:0,75,975 0/0:17,0:17:45.14:0,45,578 0/0:49,0:49:99:0,123,1577 0/0:27,0:27:69.22:0,69,897 0/0:16,0:16:48.15:0,48,608 0/0:19,0:19:45.13:0,45,568 0/0:22,0:22:60.17:0,60,746 0/0:45,0:45:99:0,111,1398 0/0:27,0:27:69.22:0,69,895 0/0:17,0:17:48.15:0,48,605 0/0:21,0:21:57.18:0,57,738 0/0:23,0:23:60.18:0,60,773 0/0:14,0:14:42.11:0,42,531 19 17741047 . A G 3148.50 . AC=16;AF=0.195;AN=82;BaseQRankSum=6.197;DP=478;Dels=0.00;FS=0.405;HRun=0;HaplotypeScore=0.2124;InbreedingCoeff=-0.1036;MQ=58.87;MQ0=0;MQRankSum=0.628;QD=18.31;ReadPosRankSum=-0.336 GT:AD:DP:GQ:PL 0/1:5,9:14:99:300,0,146 0/1:2,6:8:26.71:171,0,27 0/1:3,7:10:87.64:181,0,88 0/0:3,0:3:9.03:0,9,117 0/0:3,0:3:6.02:0,6,84 0/0:5,0:5:12.04:0,12,154 0/0:5,0:5:12.04:0,12,163 0/0:10,0:10:27.09:0,27,360 0/0:18,0:18:42.13:0,42,540 0/0:9,0:9:24.07:0,24,289 0/0:6,0:6:18.06:0,18,225 0/0:17,0:17:45.14:0,45,572 0/0:7,0:7:18.03:0,18,217 0/0:12,0:12:30.10:0,30,379 0/0:45,0:45:99:0,111,1397 0/0:10,0:10:27.08:0,27,334 0/0:18,0:18:51.15:0,51,618 1/1:0,15:15:42.13:530,42,0 0/1:6,8:14:99:233,0,163 0/0:23,0:23:66.21:0,66,827 0/1:10,6:16:99:141,0,328 0/1:7,12:19:99:378,0,170 0/0:3,0:3:9.03:0,9,116 0/1:1,1:2:33.99:36,0,34 0/1:3,3:6:66.70:100,0,67 0/1:3,2:5:69.72:70,0,102 ./. 0/0:15,0:15:42.13:0,42,531 0/0:9,0:9:24.07:0,24,296 0/1:4,1:5:23.53:24,0,128 0/0:17,0:17:48.13:0,48,582 0/1:9,10:19:99:334,0,228 0/1:2,14:16:27.97:446,0,28 0/0:10,0:10:27.08:0,27,335 0/0:11,0:11:30.10:0,30,380 0/0:8,0:8:21.06:0,21,253 0/0:17,0:17:48.15:0,48,604 0/0:4,0:4:12.04:0,12,146 0/0:13,0:13:36.11:0,36,439 0/0:8,0:8:24.07:0,24,293 0/1:6,8:14:99:205,0,179 0/1:4,5:9:99:163,0,123 19 17886940 . G A 48059.27 . 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T C 678.51 . 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G A 3864.96 . AC=4;AF=0.048;AN=84;BaseQRankSum=-4.562;DP=2498;Dels=0.00;FS=8.384;HRun=0;HaplotypeScore=1.8938;InbreedingCoeff=-0.0500;MQ=59.28;MQ0=0;MQRankSum=0.208;QD=13.06;ReadPosRankSum=-0.727 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,126,1555 0/0:38,0:38:99:0,108,1332 0/0:32,0:32:87.24:0,87,1038 0/0:161,0:161:99:0,463,5887 0/0:142,0:142:99:0,409,5196 0/1:45,35:80:99:1041,0,1417 0/1:30,30:60:99:855,0,959 0/0:106,0:106:99:0,301,3816 0/0:37,0:37:99:0,111,1362 0/0:37,0:37:99:0,102,1212 0/0:35,0:35:99:0,102,1211 0/0:43,0:43:99:0,117,1397 0/0:38,0:38:99:0,108,1374 0/0:31,0:31:84.25:0,84,1049 0/0:118,0:118:99:0,334,3998 0/0:47,0:47:99:0,132,1595 0/0:40,0:40:99:0,108,1281 0/0:41,0:41:99:0,108,1355 0/0:74,0:74:99:0,208,2422 0/0:86,0:86:99:0,229,2854 0/0:69,0:70:99:0,196,2319 0/0:52,0:52:99:0,147,1804 0/0:153,0:153:99:0,442,5528 0/1:35,34:69:99:949,0,1178 0/1:49,38:87:99:1020,0,1546 0/0:74,1:75:99:0,208,2669 0/0:34,0:34:93.27:0,93,1141 0/0:44,0:45:99:0,120,1463 0/0:30,0:30:81.22:0,81,956 0/0:40,0:40:99:0,111,1354 0/0:31,0:31:93.28:0,93,1135 0/0:85,0:85:99:0,232,2937 0/0:50,0:50:99:0,141,1728 0/0:39,0:39:99:0,117,1381 0/0:26,1:27:48.75:0,49,932 0/0:40,0:40:99:0,117,1400 0/0:67,0:68:99:0,181,2224 0/0:53,0:53:99:0,156,1893 0/0:47,0:47:99:0,132,1610 0/0:41,0:41:99:0,117,1430 0/0:36,0:37:99:0,105,1273 0/0:32,0:32:90.25:0,90,1083 19 17945696 . C T 4259.75 . 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T C 1315.59 . 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G C 78.76 . 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C T 3629.90 . AC=4;AF=0.048;AN=84;BaseQRankSum=-15.072;DP=2642;Dels=0.00;FS=3.986;HRun=0;HaplotypeScore=1.9322;InbreedingCoeff=-0.0500;MQ=59.26;MQ0=0;MQRankSum=2.281;QD=13.30;ReadPosRankSum=-0.336 GT:AD:DP:GQ:PL 0/1:30,17:47:99:458,0,954 0/0:30,0:30:87.27:0,87,1073 0/0:50,0:50:99:0,132,1664 0/0:114,0:114:99:0,334,4397 0/0:119,0:119:99:0,352,4634 0/0:87,0:87:99:0,250,3314 0/0:69,0:69:99:0,205,2706 0/0:88,0:88:99:0,262,3491 0/0:53,0:53:99:0,138,1751 0/0:38,0:38:99:0,111,1360 0/0:43,0:43:99:0,117,1453 0/0:41,0:41:99:0,114,1420 0/0:36,0:36:96.31:0,96,1233 0/0:38,0:39:99:0,108,1309 0/1:59,61:120:99:1518,0,1771 0/0:61,0:61:99:0,175,2174 0/1:20,29:49:99:877,0,537 0/0:31,0:31:90.28:0,90,1143 0/0:98,0:98:99:0,280,3442 0/0:105,0:105:99:0,304,3815 0/0:111,0:111:99:0,313,3887 0/0:65,0:65:99:0,178,2177 0/0:146,0:146:99:0,415,5614 0/0:58,0:58:99:0,166,2219 0/0:73,0:73:99:0,217,2871 0/0:71,0:71:99:0,208,2730 0/0:35,0:35:99:0,105,1322 0/0:40,0:40:99:0,114,1413 0/0:43,0:43:99:0,126,1571 0/0:38,0:38:99:0,111,1366 0/0:36,0:36:99:0,99,1246 0/0:124,0:124:99:0,352,4448 0/1:28,29:57:99:777,0,838 0/0:45,0:45:99:0,135,1673 0/0:30,0:30:84.22:0,84,1021 0/0:51,0:51:99:0,144,1769 0/0:85,0:86:99:0,241,2967 0/0:40,0:40:99:0,114,1432 0/0:49,0:49:99:0,144,1773 0/0:44,0:44:99:0,120,1467 0/0:37,0:37:99:0,105,1312 0/0:44,1:45:99:0,101,1536 19 18186575 . G A 26638.11 . 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T C 24608.74 . 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A G 24113.53 . 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C T 33494.22 . 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T C 98735.30 . 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G A 40187.30 . 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C T 1246.13 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.273;DP=2294;Dels=0.00;FS=2.127;HRun=0;HaplotypeScore=1.2922;InbreedingCoeff=-0.0244;MQ=58.70;MQ0=0;MQRankSum=2.144;QD=12.34;ReadPosRankSum=0.451 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,105,1292 0/0:52,0:52:99:0,144,1783 0/0:40,0:40:99:0,102,1283 0/0:100,0:100:99:0,286,3659 0/0:80,0:80:99:0,235,3041 0/0:67,0:67:99:0,190,2465 0/0:71,0:71:99:0,199,2600 0/0:48,0:48:99:0,129,1685 0/0:50,0:50:99:0,135,1684 0/0:47,0:47:99:0,126,1530 0/0:41,0:41:99:0,108,1334 0/1:29,20:49:99:514,0,782 0/0:38,0:38:99:0,108,1300 0/1:25,27:52:99:794,0,735 0/0:166,0:166:99:0,397,4958 0/0:39,0:39:99:0,105,1323 0/0:55,0:55:99:0,156,1903 0/0:40,0:40:99:0,108,1326 0/0:54,0:54:99:0,135,1624 0/0:65,0:65:99:0,175,2152 0/0:66,0:66:99:0,178,2196 0/0:41,0:41:99:0,105,1293 0/0:113,0:113:99:0,325,4290 0/0:33,0:33:99:0,99,1265 0/0:59,0:59:99:0,175,2287 0/0:58,0:58:99:0,169,2162 0/0:35,0:35:96.28:0,96,1179 0/0:35,0:35:99:0,99,1222 0/0:44,0:44:99:0,132,1573 0/0:54,0:54:99:0,141,1761 0/0:46,0:46:99:0,129,1546 0/0:67,0:67:99:0,178,2191 0/0:48,0:48:99:0,135,1632 0/0:35,0:35:90.26:0,90,1095 0/0:38,0:38:99:0,102,1243 0/0:56,0:56:99:0,156,1945 0/0:63,0:64:99:0,168,2035 0/0:37,0:37:96.29:0,96,1187 0/0:44,1:45:99:0,101,1474 0/0:41,0:41:99:0,114,1382 0/0:33,0:33:93.28:0,93,1140 0/0:55,0:55:99:0,153,1918 19 18546678 . T C 64419.61 . AC=29;AF=0.345;AN=84;BaseQRankSum=47.525;DP=6748;DS;Dels=0.00;FS=42.646;HRun=0;HaplotypeScore=3.8900;InbreedingCoeff=-0.4219;MQ=59.41;MQ0=0;MQRankSum=0.582;QD=14.76;ReadPosRankSum=-0.436 GT:AD:DP:GQ:PL 0/1:70,78:148:99:2138,0,1777 0/1:65,45:110:99:1170,0,1771 0/1:60,49:109:99:1356,0,1668 0/1:125,125:250:99:3853,0,3234 0/1:107,141:248:99:4421,0,2753 0/0:250,0:250:99:0,647,8055 0/1:92,107:199:99:3239,0,2494 0/1:121,102:223:99:3023,0,3012 1/1:0,129:129:99:4359,349,0 0/1:44,60:104:99:1721,0,1160 0/1:58,54:112:99:1533,0,1551 0/0:132,0:132:99:0,358,4258 0/1:45,43:88:99:1330,0,1120 0/0:107,0:107:99:0,298,3472 0/0:244,0:244:99:0,629,7366 0/1:63,68:132:99:2067,0,1645 0/0:124,3:127:99:0,241,4008 0/0:126,0:126:99:0,358,4189 0/1:138,107:246:99:2878,0,3665 0/1:128,113:241:99:3162,0,3324 0/0:250,0:250:99:0,650,7840 0/0:207,0:207:99:0,545,6413 0/1:125,124:249:99:3956,0,3129 0/0:222,0:222:99:0,548,6689 0/1:120,129:250:99:3986,0,2957 0/1:80,93:173:99:2822,0,2148 0/1:51,38:89:99:979,0,1350 0/0:116,0:116:99:0,316,3756 0/1:54,39:93:99:1087,0,1438 0/0:116,1:117:99:0,274,3683 0/1:57,50:107:99:1360,0,1660 0/0:234,0:234:99:0,581,7077 0/1:82,79:161:99:2134,0,2224 0/1:66,52:118:99:1353,0,1899 0/1:59,50:109:99:1379,0,1617 0/0:162,0:162:99:0,430,5162 0/1:117,108:227:99:2842,0,3110 0/1:53,61:114:99:1757,0,1386 0/1:54,48:102:99:1279,0,1514 0/1:58,60:118:99:1703,0,1605 0/0:88,1:89:99:0,213,2863 0/1:57,55:112:99:1531,0,1575 19 18546944 . G A 658.03 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.406;DP=967;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.5489;InbreedingCoeff=-0.0244;MQ=58.65;MQ0=0;MQRankSum=0.921;QD=11.75;ReadPosRankSum=0.350 GT:AD:DP:GQ:PL 0/0:15,0:15:39.10:0,39,432 0/0:19,0:19:54.15:0,54,625 0/0:13,0:13:39.10:0,39,448 0/0:38,0:38:99:0,111,1326 0/0:34,0:34:99:0,99,1244 0/0:23,0:23:63.19:0,63,793 0/0:28,0:28:81.22:0,81,996 0/0:29,0:29:81.24:0,81,985 0/0:24,0:24:69.20:0,69,827 0/0:23,0:23:66.19:0,66,769 0/0:17,0:17:48.13:0,48,553 0/0:21,0:21:54.14:0,54,610 0/0:14,0:14:39.12:0,39,477 0/0:18,0:18:48.13:0,48,570 0/0:66,0:66:99:0,181,2134 0/0:27,0:27:75.20:0,75,870 0/0:11,0:11:33.08:0,33,358 0/0:22,0:22:66.19:0,66,780 0/0:36,0:36:99:0,102,1126 0/0:32,0:32:93.25:0,93,1063 0/0:34,0:34:87.24:0,87,1020 0/0:30,0:30:87.21:0,87,991 0/0:39,0:39:99:0,114,1407 0/0:19,0:19:51.15:0,51,608 0/0:20,0:20:51.15:0,51,628 0/0:14,0:14:39.09:0,39,442 0/0:13,0:13:39.10:0,39,432 0/0:17,0:17:45.11:0,45,510 0/0:14,0:14:39.10:0,39,447 0/0:19,0:19:54.16:0,54,638 0/0:21,0:21:60.16:0,60,703 0/0:24,0:24:66.17:0,66,759 0/0:17,0:17:48.12:0,48,551 0/0:15,0:15:45.10:0,45,497 0/0:22,0:22:66.15:0,66,741 0/0:12,0:13:36.10:0,36,422 0/1:17,18:35:99:496,0,416 0/1:12,9:21:99:225,0,303 0/0:20,0:20:48.13:0,48,577 0/0:18,0:18:48.14:0,48,556 0/0:18,0:18:51.14:0,51,595 0/0:13,1:14:39.11:0,39,446 19 18652521 . G A 274.65 . AC=1;AF=0.012;AN=84;BaseQRankSum=-3.073;DP=1462;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9023;InbreedingCoeff=-0.0121;MQ=58.77;MQ0=0;MQRankSum=0.782;QD=15.26;ReadPosRankSum=1.138 GT:AD:DP:GQ:PL 0/0:17,0:17:48.14:0,48,593 0/0:20,0:20:51.16:0,51,645 0/0:15,0:15:39.11:0,39,462 0/0:113,0:114:99:0,283,3682 0/0:93,0:93:99:0,229,3053 0/0:59,0:59:99:0,144,1920 0/0:59,0:59:99:0,156,2028 0/0:52,0:52:99:0,114,1533 0/0:19,0:19:48.15:0,48,619 0/0:28,0:28:75.23:0,75,935 0/1:6,12:18:99:321,0,182 0/0:23,0:23:66.20:0,66,811 0/0:16,0:16:45.14:0,45,556 0/0:25,0:25:66.17:0,66,803 0/0:81,0:81:99:0,214,2611 0/0:20,0:20:51.15:0,51,627 0/0:20,0:20:54.17:0,54,666 0/0:16,0:16:48.14:0,48,582 0/0:35,0:35:84.26:0,84,1045 0/0:37,0:37:93.25:0,93,1148 0/0:42,0:42:99:0,105,1307 0/0:16,0:16:42.10:0,42,519 0/0:123,0:123:99:0,304,4025 0/0:42,0:42:99:0,99,1321 0/0:72,0:72:99:0,169,2250 0/0:53,0:53:99:0,138,1828 0/0:15,0:15:39.12:0,39,494 0/0:20,0:20:57.17:0,57,691 0/0:17,0:17:45.13:0,45,548 0/0:18,0:18:42.13:0,42,541 0/0:20,0:20:54.17:0,54,687 0/0:43,0:43:99:0,111,1368 0/0:20,0:20:57.17:0,57,711 0/0:11,0:11:33.10:0,33,409 0/0:17,0:18:45.14:0,45,575 0/0:25,0:25:72.22:0,72,892 0/0:40,0:40:99:0,105,1237 0/0:23,0:23:66.17:0,66,787 0/0:23,0:23:60.15:0,60,717 0/0:20,0:20:57.17:0,57,695 0/0:14,0:14:39.13:0,39,503 0/0:20,0:20:51.15:0,51,624 19 18679351 . C T 3141.97 . AC=3;AF=0.036;AN=84;BaseQRankSum=9.721;DP=4712;DS;Dels=0.00;FS=1.611;HRun=0;HaplotypeScore=3.2971;InbreedingCoeff=-0.0370;MQ=59.17;MQ0=0;MQRankSum=0.172;QD=11.34;ReadPosRankSum=0.391 GT:AD:DP:GQ:PL 0/0:84,0:85:99:0,235,2604 0/0:87,0:87:99:0,247,2659 0/0:83,0:83:99:0,238,2541 0/0:172,0:172:99:0,490,5743 0/0:187,0:187:99:0,544,6451 0/0:144,0:145:99:0,427,5100 0/0:128,2:131:99:0,313,4118 0/0:123,0:123:99:0,358,4205 0/0:93,0:93:99:0,277,2982 0/0:86,0:86:99:0,238,2596 0/1:49,34:83:99:962,0,1274 0/0:80,0:82:99:0,223,2388 0/0:65,0:65:99:0,186,2031 0/0:79,0:80:99:0,235,2565 0/0:192,0:193:99:0,553,5915 0/0:110,0:111:99:0,316,3487 0/0:93,0:93:99:0,277,2955 0/0:75,0:75:99:0,217,2377 0/0:160,0:160:99:0,454,4880 0/0:181,0:181:99:0,508,5469 0/0:148,0:149:99:0,409,4423 0/0:112,0:112:99:0,313,3345 0/0:180,0:181:99:0,517,6088 0/0:105,0:105:99:0,295,3502 0/0:133,0:133:99:0,382,4531 0/0:114,0:114:99:0,328,3874 0/0:61,0:61:99:0,177,1919 0/0:70,0:71:99:0,204,2151 0/0:102,0:102:99:0,286,3165 0/0:111,0:112:99:0,322,3522 0/0:90,0:90:99:0,262,2834 0/0:168,0:168:99:0,478,5178 0/0:127,0:127:99:0,373,3991 0/1:58,38:96:99:975,0,1445 0/1:54,44:98:99:1281,0,1417 0/0:96,0:96:99:0,277,2968 0/0:154,0:154:99:0,457,4961 0/0:90,0:90:99:0,262,2816 0/0:91,0:91:99:0,271,2870 0/0:92,0:92:99:0,265,2841 0/0:70,0:70:99:0,207,2209 0/0:84,1:85:99:0,216,2691 19 18679379 . C G 37037.35 . AC=42;AF=0.500;AN=84;BaseQRankSum=-7.858;DP=2765;DS;Dels=0.00;FS=10.424;HRun=1;HaplotypeScore=3.3392;InbreedingCoeff=-0.0476;MQ=58.61;MQ0=0;MQRankSum=0.529;QD=18.78;ReadPosRankSum=-0.215 GT:AD:DP:GQ:PL 0/1:27,29:56:99:728,0,634 0/1:27,21:48:99:499,0,669 0/1:19,29:48:99:785,0,431 0/0:118,0:118:99:0,331,4114 0/0:105,0:105:99:0,286,3599 0/1:43,32:75:99:913,0,1292 0/0:74,1:75:99:0,154,2405 1/1:0,78:78:99:2510,211,0 0/1:22,21:43:99:563,0,603 0/1:21,24:45:99:572,0,488 0/1:29,30:59:99:852,0,706 1/1:0,44:45:99:1470,123,0 0/1:23,21:44:99:588,0,578 0/1:31,21:52:99:555,0,898 0/0:140,0:140:99:0,364,4421 0/1:20,37:57:99:1068,0,419 0/1:23,23:46:99:645,0,637 1/1:0,44:44:99:1333,111,0 1/1:0,86:89:99:2697,226,0 0/1:47,67:114:99:1863,0,1255 0/1:39,35:74:99:977,0,879 0/0:58,0:58:99:0,168,2017 0/1:56,53:109:99:1511,0,1593 0/0:64,0:64:99:0,184,2311 0/0:77,1:78:99:0,159,2408 0/1:36,25:61:99:692,0,994 1/1:2,42:44:99:1316,111,0 0/1:21,21:42:99:487,0,483 1/1:1,53:54:99:1665,109,0 1/1:0,63:63:99:2076,172,0 0/1:22,25:47:99:615,0,639 0/1:59,55:114:99:1314,0,1718 0/1:42,36:78:99:940,0,1092 0/0:45,0:45:99:0,126,1495 0/0:51,0:51:99:0,132,1601 0/0:59,0:59:99:0,138,1660 1/1:0,78:79:99:2227,184,0 1/1:0,45:45:99:1403,117,0 1/1:0,58:58:99:1837,156,0 0/1:26,29:55:99:770,0,691 0/1:20,23:43:99:618,0,588 0/1:28,33:63:99:950,0,807 19 18709358 . GAGT G 264.05 . AC=12;AF=0.143;AN=84;BaseQRankSum=1.918;DP=3648;DS;FS=1927.294;HRun=0;HaplotypeScore=325.3932;InbreedingCoeff=-0.1824;MQ=58.96;MQ0=0;MQRankSum=0.715;QD=0.33;ReadPosRankSum=-22.176 GT:AD:DP:GQ:PL 0/0:69,0:69:31.02:0,31,3405 0/1:64,0:64:68.63:69,0,2685 0/0:46,0:46:40.36:0,40,2147 0/0:216,0:216:99:0,160,9729 0/0:203,0:203:99:0,304,10172 0/0:164,0:161:99:0,172,8108 0/0:107,0:104:63.96:0,64,4955 0/0:171,0:170:99:0,215,7358 0/1:48,0:48:43.83:44,0,1967 0/0:41,0:41:58.70:0,59,1985 0/1:49,0:49:20.66:21,0,2202 0/0:55,0:54:46.24:0,46,2534 0/0:46,0:46:27.62:0,28,2139 0/1:53,0:53:12.55:13,0,2290 0/0:175,0:175:99:0,146,7712 0/0:56,0:56:37.39:0,37,2550 0/0:47,0:47:44.25:0,44,2391 0/1:26,10:36:38.98:39,0,1537 0/0:98,0:98:2.91:0,3,4125 0/0:138,0:138:99:0,200,6790 0/0:107,0:107:99:0,159,5157 0/1:64,0:64:45.29:45,0,2745 0/1:208,0:208:33.09:33,0,8960 0/0:146,0:145:99:0,165,6965 0/0:171,0:168:99:0,302,7941 0/0:144,0:144:99:0,159,6514 0/0:41,0:41:46.47:0,46,1739 0/0:42,0:42:59.18:0,59,1925 0/0:51,0:51:1.05:6,0,2477 0/0:57,0:57:77.98:0,78,2693 0/0:49,0:49:99:0,102,2687 0/0:117,0:117:99:0,140,5287 0/0:76,0:76:79.65:0,80,3784 0/0:56,0:56:78.14:0,78,2632 0/0:49,0:49:35.53:0,36,2351 0/1:49,0:49:20.49:20,0,2123 0/1:79,0:79:32.45:32,0,3538 0/1:58,0:58:69.86:70,0,2359 0/1:33,0:33:14.08:14,0,1425 0/0:52,0:52:98.33:0,98,2639 0/1:52,0:52:11.91:12,0,2393 0/0:65,0:65:37.52:0,38,2995 19 18709359 . A G 145.59 . 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T C 42065.18 . 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A C 136.35 . 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T C 6.52 . 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C T 2948.57 . 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T C 4664.56 . AC=4;AF=0.048;AN=84;BaseQRankSum=-14.848;DP=2301;Dels=0.00;FS=13.134;HRun=0;HaplotypeScore=1.0834;InbreedingCoeff=-0.0500;MQ=58.99;MQ0=0;MQRankSum=-0.774;QD=13.68;ReadPosRankSum=-0.725 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,114,1414 0/0:44,0:44:99:0,126,1551 0/0:45,0:45:99:0,129,1549 0/0:60,0:60:99:0,159,1979 0/0:75,0:75:99:0,205,2570 0/0:53,0:53:99:0,144,1845 0/0:41,0:41:99:0,105,1308 0/0:65,0:65:99:0,178,2232 0/0:60,0:60:99:0,178,2138 0/0:49,0:49:99:0,135,1627 0/0:46,0:46:99:0,126,1528 0/0:44,0:44:99:0,123,1477 0/0:40,0:40:99:0,114,1400 0/0:48,0:48:99:0,129,1564 0/1:59,95:154:99:2432,0,1522 0/0:47,0:47:99:0,135,1610 0/1:26,28:54:99:726,0,746 0/0:48,0:48:99:0,138,1673 0/0:69,0:69:99:0,187,2275 0/1:41,39:80:99:917,0,1122 0/0:72,0:74:99:0,193,2371 0/0:52,0:52:99:0,147,1782 0/0:68,0:68:99:0,187,2291 0/0:54,0:54:99:0,147,1835 0/0:51,0:51:99:0,144,1793 0/0:51,0:51:99:0,129,1615 0/0:31,0:31:90.28:0,90,1091 0/0:43,0:43:99:0,120,1455 0/0:45,0:45:99:0,129,1513 0/0:45,0:45:99:0,129,1582 0/0:42,0:42:99:0,126,1534 0/0:54,0:54:99:0,150,1858 0/0:64,0:64:99:0,169,2070 0/0:51,0:51:99:0,144,1769 0/0:47,0:47:99:0,138,1658 0/1:29,23:52:99:589,0,857 0/0:91,0:91:99:0,238,2934 0/0:47,0:47:99:0,123,1545 0/0:48,0:48:99:0,144,1714 0/0:45,0:45:99:0,129,1595 0/0:30,0:30:87.27:0,87,1065 0/0:51,0:51:99:0,147,1804 19 18901692 . C T 148.70 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.192;DP=287;Dels=0.00;FS=1.530;HRun=0;HaplotypeScore=0.2546;InbreedingCoeff=-0.0358;MQ=58.43;MQ0=0;MQRankSum=0.127;QD=12.39;ReadPosRankSum=0.690 GT:AD:DP:GQ:PL 0/0:6,0:6:18.05:0,18,214 0/0:7,0:7:21.06:0,21,238 0/0:5,0:5:12.03:0,12,131 0/0:9,0:9:24.05:0,24,288 0/0:10,0:10:30.08:0,30,352 0/0:8,0:8:21.07:0,21,271 0/0:4,0:4:12.04:0,12,144 0/0:4,0:4:12.03:0,12,138 0/0:12,0:12:30.09:0,30,369 0/0:9,0:9:24.07:0,24,287 0/0:6,0:6:18.05:0,18,203 0/0:4,0:4:9.03:0,9,111 0/0:5,0:5:15.03:0,15,157 0/0:6,0:6:15.04:0,15,171 0/0:15,0:15:39.10:0,39,436 0/0:14,0:14:36.10:0,36,406 0/0:2,0:2:6.02:0,6,66 0/0:5,0:5:15.04:0,15,175 0/0:8,0:8:21.06:0,21,240 0/1:5,7:12:99:195,0,117 0/0:6,0:6:18.05:0,18,216 0/0:12,0:12:30.09:0,30,352 0/0:5,0:5:15.04:0,15,177 0/0:6,0:6:18.05:0,18,216 0/0:3,0:3:6.02:0,6,83 0/0:8,0:8:24.06:0,24,279 0/0:3,0:3:9.01:0,9,93 0/0:4,0:4:9.03:0,9,115 0/0:2,0:2:6.01:0,6,59 0/0:3,0:3:9.03:0,9,106 0/0:8,0:8:21.06:0,21,260 0/0:11,0:11:33.09:0,33,371 0/0:6,0:6:18.05:0,18,206 0/0:5,0:5:15.03:0,15,155 0/0:3,0:3:9.03:0,9,105 0/0:7,0:7:21.06:0,21,244 0/0:13,0:13:33.06:0,33,352 0/0:10,0:10:30.08:0,30,338 0/0:8,0:8:24.07:0,24,273 0/0:4,0:4:9.03:0,9,104 0/0:5,0:5:12.03:0,12,142 0/0:3,0:3:9:0,9,95 19 18966824 . C T 957.47 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.822;DP=1358;Dels=0.00;FS=16.228;HRun=0;HaplotypeScore=0.8569;InbreedingCoeff=-0.0244;MQ=59.12;MQ0=0;MQRankSum=0.775;QD=14.08;ReadPosRankSum=0.615 GT:AD:DP:GQ:PL 0/0:23,0:23:69.19:0,69,808 0/0:26,0:26:69.19:0,69,822 0/0:24,0:24:69.20:0,69,837 0/0:64,0:64:99:0,169,2114 0/0:50,0:50:99:0,132,1642 0/0:32,0:32:93.28:0,93,1149 0/0:31,0:32:84.24:0,84,1032 0/0:33,0:33:87.27:0,87,1114 0/0:24,0:24:63.15:0,63,738 0/0:20,0:20:57.16:0,57,665 0/0:30,0:30:81.23:0,81,973 0/0:23,0:23:66.18:0,66,769 0/0:24,0:24:69.18:0,69,793 0/0:29,0:29:75.22:0,75,907 0/0:85,0:87:99:0,235,2804 0/0:30,0:30:84.24:0,84,1008 0/0:31,0:31:87.26:0,87,1050 0/0:16,0:16:48.12:0,48,546 0/0:44,0:44:99:0,129,1479 0/0:36,0:36:96.28:0,96,1135 0/0:33,0:33:90.25:0,90,1087 0/0:32,0:32:87.23:0,87,1026 0/0:58,0:58:99:0,165,2031 0/0:28,1:29:47.80:0,48,919 0/0:27,0:27:78.23:0,78,987 0/0:27,0:27:78.23:0,78,984 0/0:22,0:22:57.17:0,57,688 0/0:29,0:29:75.19:0,75,869 0/0:31,0:31:87.25:0,87,1043 0/0:29,0:29:84.24:0,84,1005 0/0:27,1:28:75.22:0,75,905 0/0:32,1:33:68.56:0,69,1015 0/0:33,0:33:90.26:0,90,1082 0/1:16,18:34:99:512,0,474 0/0:21,0:21:57.17:0,57,679 0/1:16,18:34:99:508,0,442 0/0:44,0:44:99:0,117,1406 0/0:25,0:26:72.20:0,72,821 0/0:30,0:30:87.23:0,87,990 0/0:30,0:31:87.24:0,87,1016 0/0:22,0:22:63.16:0,63,717 0/0:26,0:26:72.20:0,72,841 19 18967721 . C T 3366.49 . AC=4;AF=0.048;AN=84;BaseQRankSum=0.781;DP=2172;Dels=0.00;FS=3.321;HRun=0;HaplotypeScore=1.7313;InbreedingCoeff=-0.0500;MQ=58.98;MQ0=0;MQRankSum=-0.585;QD=12.51;ReadPosRankSum=-0.480 GT:AD:DP:GQ:PL 0/1:20,24:44:99:696,0,529 0/0:32,0:33:93.27:0,93,1114 0/0:26,0:26:63.17:0,63,760 0/0:125,0:126:99:0,334,4198 0/0:102,0:102:99:0,277,3484 0/0:68,0:68:99:0,190,2355 0/0:79,0:79:99:0,211,2632 0/0:72,0:72:99:0,196,2537 0/0:27,0:27:72.20:0,72,852 0/0:37,0:37:99:0,102,1234 0/0:36,0:36:90.28:0,90,1132 0/0:48,0:49:99:0,135,1584 0/0:31,0:31:84.22:0,84,1009 0/0:40,0:40:99:0,120,1441 0/0:123,0:124:99:0,310,3756 0/0:40,0:40:99:0,117,1376 0/0:38,0:38:99:0,102,1177 0/0:29,0:29:84.25:0,84,1014 0/0:61,0:61:99:0,159,1898 0/0:52,0:52:99:0,135,1615 0/1:24,22:51:99:645,0,713 0/0:29,0:29:81.21:0,81,929 0/1:67,39:107:99:1127,0,1965 0/0:61,0:61:99:0,163,2094 0/0:81,0:81:99:0,217,2774 0/0:58,0:58:99:0,159,1960 0/0:39,1:40:96.29:0,96,1179 0/0:35,0:35:90.24:0,90,1071 0/0:39,0:39:99:0,108,1286 0/0:44,0:44:99:0,123,1424 0/0:38,1:39:99:0,108,1293 0/1:34,33:67:99:898,0,936 0/0:43,0:44:99:0,123,1374 0/0:36,0:36:93.26:0,93,1132 0/0:30,1:31:87.21:0,87,1034 0/0:40,0:40:99:0,111,1276 0/0:60,0:61:99:0,153,1789 0/0:38,0:39:96.19:0,96,1105 0/0:36,1:38:75.64:0,76,1167 0/0:35,0:36:99:0,102,1229 0/0:42,0:42:99:0,114,1328 0/0:39,0:39:99:0,102,1260 19 18974289 . G C 2446.09 . AC=12;AF=0.143;AN=84;BaseQRankSum=-32.645;DP=7941;DS;Dels=0.00;FS=1727.240;HRun=1;HaplotypeScore=6.3489;InbreedingCoeff=-0.1728;MQ=58.78;MQ0=0;MQRankSum=-0.216;QD=0.96;ReadPosRankSum=-22.162 GT:AD:DP:GQ:PL 0/0:110,62:175:99:0,152,3083 0/0:100,51:151:99:0,125,2893 0/0:104,53:157:99:0,145,3117 0/1:81,169:250:99:262,0,1762 0/1:101,149:250:99:113,0,2136 0/1:125,113:238:99:185,0,2360 0/0:124,93:218:41.94:0,42,2913 0/0:156,94:250:99:0,198,3890 0/0:101,52:153:79.56:0,80,2709 0/0:108,62:170:71.46:0,71,2809 0/0:104,54:158:99:0,145,2619 0/0:101,47:148:34.02:0,34,2589 0/0:73,36:109:99:0,112,1875 0/0:111,47:159:60.71:0,61,2719 0/1:112,138:250:99:731,0,2866 0/1:102,49:151:10.62:11,0,2366 0/0:101,51:152:57.64:0,58,2648 0/1:96,46:142:41.33:41,0,2366 0/1:109,92:204:99:413,0,2747 0/0:161,89:250:99:0,130,3710 0/1:110,112:224:99:528,0,2476 0/0:151,79:230:78.10:0,78,3753 0/1:101,148:250:41.99:42,0,1948 0/0:153,75:228:99:0,149,3705 0/0:136,112:248:2.65:1,0,2311 0/0:161,89:250:61.82:0,62,3501 0/0:72,27:99:39.69:0,40,1924 0/0:124,38:162:99:0,225,3457 0/0:102,46:149:57.47:0,57,2545 0/0:99,49:148:99:0,123,2610 0/0:96,54:151:81.92:0,82,2655 0/0:172,77:250:99:0,156,3740 0/0:155,67:223:99:0,198,3827 0/0:127,58:185:99:0,118,3425 0/0:122,58:180:99:0,121,3281 0/0:104,53:158:99:0,206,3029 0/1:143,99:243:99:218,0,3343 0/0:114,54:168:99:0,211,3301 0/1:111,60:171:10.32:10,0,2724 0/0:126,71:197:64.78:0,65,3211 0/0:82,40:122:90.93:0,91,2046 0/1:109,61:170:32.67:33,0,2978 19 19004377 . G A 103.68 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.585;DP=503;Dels=0.00;FS=1.735;HRun=0;HaplotypeScore=0.4172;InbreedingCoeff=-0.0325;MQ=58.70;MQ0=0;MQRankSum=0.525;QD=6.10;ReadPosRankSum=2.208 GT:AD:DP:GQ:PL 0/0:12,0:12:30.09:0,30,379 0/0:7,0:7:18.05:0,18,218 0/0:7,0:7:21.03:0,21,224 0/0:28,0:28:75.22:0,75,939 0/0:23,0:23:63.16:0,63,742 0/0:15,0:15:39.12:0,39,492 0/0:13,0:13:36.10:0,36,437 0/0:16,0:16:45.12:0,45,539 0/0:6,0:6:18.05:0,18,206 0/0:3,0:3:9.02:0,9,99 0/0:7,0:7:18.04:0,18,190 0/0:9,0:9:27.08:0,27,327 0/0:4,0:4:12.03:0,12,131 0/0:6,0:6:18.05:0,18,209 0/0:33,0:33:93.26:0,93,1097 0/0:11,0:11:27.08:0,27,312 0/0:6,0:6:15.04:0,15,177 0/0:14,0:14:42.12:0,42,498 0/0:15,0:15:42.07:0,42,463 0/0:23,1:24:37.48:0,37,677 0/0:17,1:18:42.09:0,42,483 0/0:13,0:13:36.10:0,36,417 0/0:20,0:20:51.16:0,51,659 0/0:15,0:15:36.11:0,36,464 0/0:14,0:14:30.09:0,30,378 0/0:12,0:13:27.07:0,27,329 0/0:6,0:6:18.05:0,18,217 0/0:8,0:8:24.06:0,24,265 0/0:1,0:1:3:0,3,29 0/1:8,5:13:99:108,0,237 0/1:2,2:4:58.38:58,0,60 0/0:15,0:15:36.11:0,36,440 0/0:13,0:13:36.10:0,36,410 0/0:9,0:9:21.06:0,21,239 0/0:9,0:9:27.07:0,27,310 0/0:13,0:13:36.10:0,36,425 0/0:17,0:17:39.10:0,39,456 0/0:9,0:10:27.08:0,27,320 0/0:10,0:10:27.08:0,27,312 0/0:6,0:6:18.04:0,18,206 0/0:5,0:5:15.04:0,15,179 0/0:12,0:12:24.08:0,24,309 19 19017825 . G A 7.95 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.088;DP=431;Dels=0.00;FS=3.069;HRun=0;HaplotypeScore=0.3103;InbreedingCoeff=-0.0192;MQ=58.62;MQ0=0;MQRankSum=1.584;QD=1.32;ReadPosRankSum=-0.643 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,166 0/0:12,0:12:33.09:0,33,376 0/0:12,0:12:33.09:0,33,377 0/0:21,0:21:63.19:0,63,752 0/0:19,0:19:57.17:0,57,688 0/0:10,0:10:27.08:0,27,346 0/0:8,0:8:21.06:0,21,260 0/0:9,0:9:27.08:0,27,330 0/0:8,0:8:24.06:0,24,271 0/0:12,0:12:30.05:0,30,314 0/0:7,0:7:21.05:0,21,222 0/0:5,0:5:15.03:0,15,153 0/0:6,0:6:12.03:0,12,143 0/0:6,0:6:18.05:0,18,201 0/0:41,0:41:93.26:0,93,1111 0/0:13,0:13:36.10:0,36,413 0/0:10,0:10:27.07:0,27,288 0/0:10,0:10:30.08:0,30,323 0/0:12,0:12:27.07:0,27,308 0/0:15,0:15:39.11:0,39,454 0/0:15,0:15:42.12:0,42,482 0/0:12,0:12:30.08:0,30,338 0/0:10,0:10:30.09:0,30,349 0/0:6,0:6:15.05:0,15,190 0/0:9,0:9:27.07:0,27,318 0/0:4,0:4:9.03:0,9,116 0/0:7,0:7:18.05:0,18,194 0/0:13,0:13:39.10:0,39,422 0/0:7,0:7:21.06:0,21,243 0/0:4,0:4:12.01:0,12,127 0/0:9,0:9:27.07:0,27,297 0/0:13,0:13:36.09:0,36,398 0/1:4,2:6:53.33:53,0,109 0/0:8,0:8:24.07:0,24,271 0/0:9,0:9:21.06:0,21,254 0/0:10,0:10:27.07:0,27,301 0/0:7,0:7:18.05:0,18,204 0/0:4,0:4:9.03:0,9,113 0/0:9,0:9:27.07:0,27,296 0/0:15,0:15:36.10:0,36,431 0/0:7,0:7:18.05:0,18,196 0/0:6,0:6:15.04:0,15,162 19 19017862 . G A 3008.47 . AC=14;AF=0.167;AN=84;BaseQRankSum=-4.331;DP=492;Dels=0.00;FS=1.373;HRun=0;HaplotypeScore=0.6774;InbreedingCoeff=-0.0400;MQ=58.81;MQ0=0;MQRankSum=2.165;QD=15.67;ReadPosRankSum=2.747 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,293 0/0:11,0:11:30.08:0,30,342 0/0:9,0:9:27.08:0,27,332 0/0:19,0:19:54.17:0,54,678 0/1:10,14:24:99:348,0,246 0/0:9,0:9:21.06:0,21,264 0/0:9,0:9:27.08:0,27,327 0/1:8,9:17:99:246,0,262 0/0:12,0:12:36.11:0,36,430 0/0:6,0:6:12.02:0,12,127 0/0:4,0:4:12.03:0,12,135 0/0:11,0:11:30.08:0,30,350 0/0:6,0:6:18.06:0,18,219 0/0:10,0:10:27.08:0,27,333 0/1:10,29:39:99:797,0,246 0/1:7,6:13:99:147,0,200 0/1:4,5:9:79.29:143,0,79 0/0:14,0:14:36.08:0,36,399 0/0:17,0:17:45.11:0,45,513 0/1:6,12:18:99:350,0,165 0/0:19,0:19:45.12:0,45,539 0/1:6,7:13:99:206,0,169 0/0:18,0:18:45.14:0,45,567 0/1:5,3:8:79.35:79,0,119 0/0:12,0:12:33.10:0,33,439 0/1:5,6:11:99:108,0,159 1/1:0,14:14:39.11:453,39,0 0/1:6,7:13:99:149,0,152 0/1:1,2:3:30.29:60,0,30 0/0:5,0:5:15.04:0,15,178 0/0:6,0:6:9.03:0,9,102 0/0:15,0:15:33.10:0,33,416 0/0:14,0:14:39.12:0,39,477 0/0:5,0:5:15.03:0,15,167 0/0:5,0:5:12.04:0,12,146 0/1:7,3:10:82.10:82,0,199 0/0:12,0:12:36.08:0,36,415 0/0:8,0:8:21.05:0,21,248 0/0:10,0:10:30.09:0,30,363 0/0:12,0:12:33.10:0,33,414 0/0:5,0:5:15.05:0,15,182 0/0:9,0:9:21.06:0,21,241 19 19023853 . T C 25540.25 . AC=39;AF=0.464;AN=84;BaseQRankSum=27.481;DP=1932;Dels=0.00;FS=37.549;HRun=0;HaplotypeScore=1.2334;InbreedingCoeff=-0.1966;MQ=59.16;MQ0=0;MQRankSum=1.090;QD=16.80;ReadPosRankSum=0.322 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,135,1611 0/0:44,0:44:99:0,108,1311 0/1:19,18:37:99:505,0,540 1/1:0,54:54:99:1929,141,0 0/1:34,20:54:99:641,0,888 0/1:31,22:53:99:694,0,839 1/1:0,29:29:78.25:1045,78,0 0/0:43,0:43:99:0,111,1374 0/0:34,0:34:96.27:0,96,1110 0/0:34,0:34:87.25:0,87,1035 0/1:13,21:34:99:670,0,341 0/1:9,15:24:99:470,0,227 0/1:13,13:26:99:389,0,360 0/1:17,18:36:99:551,0,493 0/1:93,67:160:99:1726,0,2353 0/1:22,16:38:99:414,0,639 0/0:47,0:47:99:0,120,1438 1/1:0,30:30:87.27:1074,87,0 1/1:0,64:64:99:2161,172,0 0/1:24,38:63:99:1019,0,564 0/1:48,33:82:99:935,0,1210 0/1:25,19:44:99:529,0,634 0/1:26,28:55:99:947,0,719 0/1:25,13:38:99:317,0,652 1/1:0,39:39:99:1410,102,0 0/1:22,25:47:99:758,0,466 0/0:37,0:37:93.26:0,93,1110 0/1:30,12:42:99:310,0,839 0/0:36,0:36:96.29:0,96,1154 1/1:0,45:45:99:1451,114,0 0/1:24,13:37:99:395,0,661 0/1:48,39:87:99:973,0,1262 0/1:27,18:45:99:497,0,651 0/0:37,0:37:93.27:0,93,1116 0/1:19,16:35:99:505,0,513 0/0:48,0:48:99:0,126,1492 0/1:26,15:41:99:369,0,690 1/1:0,35:35:93.24:1130,93,0 0/1:19,18:37:99:487,0,480 0/1:24,18:42:99:457,0,656 0/1:18,15:33:99:414,0,494 0/1:21,13:34:99:369,0,537 19 19042905 . G A 162.27 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.748;DP=273;Dels=0.00;FS=2.917;HRun=5;HaplotypeScore=0.3046;InbreedingCoeff=-0.0623;MQ=58.85;MQ0=0;MQRankSum=0.188;QD=11.59;ReadPosRankSum=-0.596 GT:AD:DP:GQ:PL 0/0:5,0:5:12.03:0,12,141 0/0:8,0:8:24.06:0,24,269 0/0:6,0:6:15.04:0,15,178 0/0:18,0:18:45.14:0,45,577 0/0:10,0:10:30.08:0,30,361 0/0:7,0:7:21.06:0,21,252 0/0:7,0:7:21.07:0,21,266 0/0:3,0:3:3.01:0,3,39 0/0:7,0:7:18.06:0,18,225 0/0:1,0:1:3.01:0,3,36 0/0:3,0:3:9.03:0,9,112 0/0:4,0:4:9.03:0,9,116 0/0:7,0:7:21.05:0,21,229 0/0:14,0:14:39.11:0,39,471 0/0:15,0:15:39.11:0,39,458 0/0:6,0:6:18.05:0,18,213 0/0:8,0:8:18.05:0,18,219 0/0:6,0:6:15.04:0,15,178 0/0:1,0:1:3.01:0,3,33 0/0:10,0:10:24.06:0,24,289 0/0:8,0:8:24.07:0,24,291 0/0:5,0:5:12.04:0,12,156 0/0:17,0:17:39.12:0,39,507 0/0:1,0:1:3.01:0,3,39 0/0:5,0:5:15.05:0,15,183 0/0:6,0:6:15.05:0,15,192 0/0:3,0:3:5.99:0,6,66 0/0:5,0:5:9.03:0,9,116 0/0:1,0:1:3.01:0,3,33 0/1:2,1:3:27.42:27,0,39 0/0:8,0:8:21.06:0,21,255 0/0:7,0:7:18.04:0,18,214 0/1:2,9:11:32.87:196,0,33 0/0:3,0:3:9.03:0,9,106 0/0:4,0:4:12.03:0,12,131 0/0:10,0:10:27.06:0,27,304 0/0:6,0:6:18.04:0,18,196 0/0:5,0:5:15.04:0,15,168 0/0:5,0:5:15.05:0,15,183 0/0:3,0:3:9.03:0,9,106 0/0:4,0:4:12.03:0,12,138 0/0:7,0:7:21.06:0,21,250 19 19049194 . G A 14423.53 . AC=13;AF=0.155;AN=84;BaseQRankSum=-10.679;DP=3542;Dels=0.00;FS=38.046;HRun=1;HaplotypeScore=14.8907;InbreedingCoeff=-0.0011;MQ=59.27;MQ0=0;MQRankSum=1.606;QD=15.13;ReadPosRankSum=-10.024 GT:AD:DP:GQ:PL 0/0:53,0:54:99:0,153,1909 0/0:67,0:67:99:0,193,2380 0/0:58,0:58:99:0,153,1903 0/0:171,0:171:99:0,439,5885 0/0:141,0:141:99:0,385,5179 0/1:56,57:113:99:1616,0,1793 1/1:1,73:74:99:2420,167,0 0/0:116,0:116:99:0,310,4150 0/0:57,0:57:99:0,165,2065 0/0:61,0:61:99:0,163,2069 0/0:56,0:56:99:0,156,1992 0/0:64,0:64:99:0,172,2166 0/0:41,0:41:99:0,120,1454 0/0:61,0:61:99:0,175,2204 0/0:239,0:240:99:0,629,7994 0/0:64,0:64:99:0,181,2257 0/1:29,37:66:99:1002,0,835 0/0:59,0:59:99:0,172,2139 0/0:87,1:88:99:0,238,2961 0/0:112,0:113:99:0,301,3835 0/1:42,45:87:99:1081,0,1165 0/1:29,46:75:99:1256,0,785 0/0:194,1:195:99:0,478,6877 0/0:69,0:69:99:0,166,2276 0/0:99,0:99:99:0,259,3441 0/0:91,0:92:99:0,217,2926 0/0:55,0:55:99:0,153,1953 0/0:86,0:86:99:0,232,2920 0/0:66,0:67:99:0,184,2325 0/1:36,32:68:99:881,0,1053 0/0:57,0:57:99:0,163,2045 0/1:63,50:113:99:1275,0,1858 0/1:27,35:62:99:874,0,793 0/0:67,1:68:99:0,150,2344 0/0:69,0:69:99:0,202,2527 0/0:66,0:66:99:0,190,2398 0/1:59,42:102:99:1056,0,1591 0/1:31,40:71:99:1165,0,921 0/0:77,0:78:99:0,217,2695 0/1:31,35:66:99:1048,0,912 0/1:29,27:56:99:749,0,921 0/0:77,0:77:99:0,217,2768 19 19049198 . G A 55206.91 . AC=39;AF=0.464;AN=84;BaseQRankSum=9.434;DP=3568;Dels=0.00;FS=18.152;HRun=0;HaplotypeScore=14.0279;InbreedingCoeff=0.1863;MQ=59.25;MQ0=0;MQRankSum=1.754;QD=21.99;ReadPosRankSum=4.580 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,147,1652 0/1:29,35:66:99:940,0,808 0/1:31,27:58:99:727,0,819 1/1:0,177:178:99:5530,451,0 1/1:0,146:146:99:4803,394,0 0/0:117,1:118:99:0,273,3839 0/0:76,1:77:99:0,179,2516 0/1:62,51:113:99:1393,0,1872 0/0:57,0:57:99:0,168,1908 0/0:62,0:62:99:0,165,1866 0/1:27,25:53:99:717,0,748 0/1:28,38:66:99:1030,0,729 0/1:20,21:41:99:575,0,539 0/0:61,1:62:99:0,135,1885 1/1:0,237:239:99:7434,623,0 1/1:1,59:61:99:1929,140,0 0/1:39,29:68:99:807,0,976 1/1:0,62:62:99:2116,181,0 1/1:0,81:81:99:2694,223,0 1/1:0,114:114:99:3682,307,0 0/0:89,0:89:99:0,226,2620 0/1:50,32:82:99:784,0,1317 0/1:107,86:194:99:2368,0,3016 1/1:0,68:68:99:2153,172,0 0/1:62,39:101:99:1063,0,1659 1/1:0,96:96:99:2898,235,0 1/1:0,57:57:99:1940,162,0 1/1:0,87:87:99:2902,244,0 0/1:38,36:74:99:935,0,991 0/1:29,36:66:99:1091,0,755 0/1:26,27:53:99:802,0,616 0/0:110,0:110:99:0,289,3372 0/0:66,0:66:99:0,171,1981 0/0:66,0:66:99:0,187,2132 0/1:37,30:67:99:885,0,982 0/0:69,0:69:99:0,199,2218 0/0:99,0:101:99:0,241,2836 0/1:40,31:71:99:825,0,1046 0/1:34,40:74:99:1145,0,872 0/0:70,0:70:99:0,189,2139 0/0:55,1:56:99:0,116,1698 0/1:38,37:75:99:1039,0,953 19 19166655 . A C 747.40 . AC=15;AF=0.179;AN=84;BaseQRankSum=-27.210;DP=3307;DS;Dels=0.00;FS=138.526;HRun=1;HaplotypeScore=1.8682;InbreedingCoeff=-0.2276;MQ=58.28;MQ0=0;MQRankSum=-1.912;QD=0.58;ReadPosRankSum=-9.895 GT:AD:DP:GQ:PL 0/0:42,19:61:91.64:0,92,1274 0/0:30,16:46:36.86:0,37,830 0/0:24,15:39:54.14:0,54,609 0/1:66,103:170:31.44:31,0,1429 0/1:69,108:178:99:154,0,1321 0/0:77,42:121:34.58:0,35,1581 0/0:72,50:123:93.16:0,93,1605 0/0:74,38:112:99:0,121,1624 0/0:34,19:53:31.21:0,31,937 0/1:26,21:47:30.57:31,0,639 0/0:36,14:50:35:0,35,871 0/0:29,17:47:36.77:0,37,773 0/0:22,17:39:18.50:0,18,471 0/1:32,29:61:99:110,0,749 0/0:53,62:115:6.39:0,6,1356 0/0:38,33:71:42.99:0,43,984 0/0:38,22:60:99:0,102,1111 0/1:32,18:50:29.15:29,0,749 0/1:47,21:69:51.99:52,0,1300 0/0:75,30:106:99:0,104,1936 0/1:57,46:103:99:156,0,1488 0/0:49,31:80:51.72:0,52,1202 0/1:85,108:194:93.50:93,0,1461 0/0:58,38:96:20.49:0,20,1325 0/0:77,34:111:63.88:0,64,1657 0/0:51,27:78:45.13:0,45,1136 0/1:24,28:52:99:113,0,518 0/1:31,28:59:18.16:18,0,835 0/1:34,22:56:16.43:16,0,679 0/1:32,32:65:6.37:6,0,788 0/0:25,20:45:48.12:0,48,532 0/0:94,35:129:99:0,176,2374 0/0:49,30:79:99:0,112,1373 0/0:41,20:61:99:0,103,1127 0/0:37,20:57:2.57:0,3,913 0/1:32,20:52:17.58:18,0,824 0/1:47,35:82:7.14:7,0,1134 0/1:29,19:48:64.12:64,0,665 0/0:34,32:66:32.93:0,33,864 0/0:37,21:58:37.92:0,38,895 0/0:31,21:52:1.51:0,2,820 0/0:41,25:66:99:0,102,1100 19 19217081 . C A 2634.28 . AC=3;AF=0.036;AN=84;BaseQRankSum=-8.205;DP=3307;Dels=0.00;FS=0.373;HRun=0;HaplotypeScore=2.3218;InbreedingCoeff=-0.0370;MQ=59.16;MQ0=0;MQRankSum=1.453;QD=11.81;ReadPosRankSum=0.800 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,132,1637 0/0:44,0:44:99:0,123,1520 0/0:32,0:32:90.28:0,90,1138 0/0:194,0:194:99:0,515,6723 0/0:160,0:160:99:0,433,5738 0/0:123,0:123:99:0,307,4132 0/1:50,40:90:99:1045,0,1489 0/0:129,0:129:99:0,349,4632 0/0:53,0:53:99:0,132,1661 0/0:45,0:45:99:0,129,1580 0/0:44,0:44:99:0,120,1492 0/0:52,0:52:99:0,135,1723 0/0:52,0:52:99:0,135,1733 0/0:46,0:46:99:0,123,1515 0/0:208,0:208:99:0,536,6756 0/0:53,0:53:99:0,147,1839 0/0:49,0:49:99:0,132,1670 0/0:52,0:52:99:0,141,1771 0/0:91,0:91:99:0,244,2989 0/0:146,0:146:99:0,331,4293 0/0:144,0:145:99:0,373,4557 0/0:78,0:78:99:0,199,2535 0/0:202,0:202:99:0,536,7079 0/0:79,0:79:99:0,214,2815 0/0:141,0:141:99:0,355,4764 0/0:81,0:81:99:0,214,2782 0/0:40,0:40:99:0,105,1343 0/0:55,0:55:99:0,135,1685 0/0:41,0:41:99:0,114,1376 0/0:51,0:51:99:0,138,1707 0/0:44,0:44:99:0,111,1378 0/0:131,0:131:99:0,319,4123 0/0:75,0:75:99:0,202,2528 0/0:36,0:36:96.29:0,96,1203 0/0:38,0:38:99:0,99,1230 0/0:43,0:43:99:0,108,1370 0/1:50,38:88:99:948,0,1339 0/0:47,0:47:99:0,129,1568 0/1:21,24:45:99:716,0,615 0/0:50,0:50:99:0,132,1668 0/0:35,0:35:90.26:0,90,1122 0/0:48,0:48:99:0,129,1644 19 19232385 . G C 296.18 . AC=10;AF=0.119;AN=84;BaseQRankSum=-12.895;DP=1841;DS;Dels=0.00;FS=223.004;HRun=2;HaplotypeScore=2.6300;InbreedingCoeff=-0.1494;MQ=58.09;MQ0=0;MQRankSum=0.623;QD=0.58;ReadPosRankSum=-9.397 GT:AD:DP:GQ:PL 0/0:25,6:31:11.88:0,12,666 0/0:26,5:31:51.14:0,51,610 0/0:15,1:16:33.07:0,33,374 0/1:65,28:93:24.08:24,0,1522 0/0:46,26:72:58.05:0,58,1275 0/0:38,13:52:33.86:0,34,896 0/0:36,10:47:46.51:0,47,857 0/0:31,7:39:16.82:0,17,715 0/0:28,7:35:32.18:0,32,717 0/0:24,4:28:51.14:0,51,611 0/0:21,5:27:7.86:0,8,586 0/0:27,6:33:63.13:0,63,713 0/0:23,3:26:51.11:0,51,567 0/0:31,7:38:16.03:0,16,704 0/1:86,39:125:73.76:74,0,2245 0/0:28,5:33:33.81:0,34,827 0/0:27,6:33:51.13:0,51,600 0/0:25,10:35:29.85:0,30,587 0/1:37,18:56:45.09:45,0,833 0/0:79,15:95:99:0,135,2057 0/0:45,13:58:60.51:0,61,950 0/0:41,9:50:51.68:0,52,916 0/0:73,21:94:99:0,141,1989 0/0:31,9:40:31.86:0,32,841 0/0:41,7:48:75.51:0,76,1146 0/0:28,10:38:38.46:0,38,675 0/0:23,9:32:5.01:0,5,661 0/0:23,4:27:35.41:0,35,613 0/1:21,6:28:9.22:9,0,402 0/1:17,7:24:21.46:21,0,424 0/1:20,8:28:91.01:91,0,410 0/0:61,10:72:81.30:0,81,1473 0/0:35,8:43:42.81:0,43,934 0/0:18,6:24:3.55:0,4,425 0/1:16,10:26:20.02:20,0,387 0/1:20,8:28:33.78:34,0,475 0/1:45,16:61:96.86:97,0,953 0/1:32,9:41:9.65:10,0,745 0/0:27,5:32:57.11:0,57,644 0/0:30,7:37:72.12:0,72,761 0/0:23,5:28:2.75:0,3,478 0/0:31,6:37:69.60:0,70,790 19 19232385 . G GC 254.71 . 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G A 14.26 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.912;DP=432;Dels=0.00;FS=14.001;HRun=2;HaplotypeScore=0.4840;InbreedingCoeff=-0.0207;MQ=57.66;MQ0=0;MQRankSum=-0.179;QD=3.56;ReadPosRankSum=0.977 GT:AD:DP:GQ:PL 0/0:6,0:6:18.05:0,18,215 0/0:5,0:5:12.03:0,12,141 0/0:6,0:6:18.06:0,18,227 0/0:20,0:20:60.19:0,60,767 0/0:16,0:16:42.14:0,42,552 0/0:11,0:11:33.09:0,33,426 0/0:9,0:9:21.07:0,21,265 0/0:15,0:15:42.10:0,42,516 0/0:6,0:6:18.06:0,18,231 0/0:7,0:7:21.04:0,21,234 0/1:2,2:4:60.22:60,0,63 0/0:11,0:11:27.08:0,27,334 0/0:10,0:10:30.10:0,30,381 0/0:15,0:15:45.13:0,45,545 0/0:14,0:14:39.10:0,39,444 0/0:13,0:13:36.09:0,36,427 0/0:7,0:7:18.05:0,18,220 0/0:4,0:4:9.03:0,9,111 0/0:14,0:14:36.10:0,36,427 0/0:18,0:18:48.15:0,48,612 0/0:18,0:18:48.11:0,48,580 0/0:8,0:8:18.05:0,18,216 0/0:26,0:26:75.21:0,75,954 0/0:9,0:9:27.08:0,27,346 0/0:10,0:10:30.09:0,30,386 0/0:6,0:6:18.06:0,18,239 0/0:8,0:8:18.05:0,18,215 0/0:8,0:8:21.06:0,21,248 0/0:9,0:9:21.07:0,21,269 0/0:6,0:6:18.06:0,18,219 0/0:8,0:8:24.06:0,24,291 0/0:26,0:26:69.20:0,69,862 0/0:12,0:12:36.11:0,36,436 0/0:11,0:11:24.06:0,24,288 0/0:7,0:7:21.05:0,21,254 0/0:4,0:4:9.03:0,9,116 0/0:16,0:16:39.11:0,39,471 0/0:9,0:9:21.07:0,21,269 0/0:3,0:3:9.02:0,9,96 0/0:4,0:4:12.04:0,12,153 0/0:9,0:9:21.07:0,21,272 0/0:4,0:4:12.03:0,12,146 19 19261489 . A C 6.72 . AC=3;AF=0.036;AN=84;BaseQRankSum=-28.805;DP=3472;DS;Dels=0.02;FS=1461.551;HRun=2;HaplotypeScore=16.4718;InbreedingCoeff=-0.0512;MQ=58.60;MQ0=0;MQRankSum=-1.542;QD=0.04;ReadPosRankSum=-21.675 GT:AD:DP:GQ:PL 0/0:57,23:80:99:0,106,1948 0/0:50,29:79:78.70:0,79,1563 0/0:45,20:66:84.03:0,84,1476 0/0:87,50:137:99:0,180,2978 0/0:69,29:99:99:0,201,2469 0/0:67,33:100:46.15:0,46,2197 0/0:55,34:89:84.78:0,85,1797 0/0:68,32:101:91.50:0,91,2177 0/1:34,22:56:36.53:37,0,1005 0/0:39,17:56:59.10:0,59,1247 0/0:47,15:62:77.54:0,78,1541 0/0:48,21:69:99:0,118,1723 0/0:42,20:63:44.93:0,45,1339 0/0:44,17:61:68.19:0,68,1382 0/0:171,33:204:99:0,424,5799 0/1:39,20:60:13.41:13,0,1185 0/0:50,15:65:99:0,117,1662 0/0:37,20:58:1.90:3,0,1122 0/0:64,28:93:99:0,127,2040 0/0:79,36:115:99:0,125,2479 0/0:73,7:81:99:0,220,2634 0/0:52,24:77:99:0,120,1761 0/0:75,33:109:99:0,194,2608 0/0:63,35:98:99:0,148,2204 0/0:80,35:115:99:0,163,2713 0/0:62,22:85:99:0,170,2012 0/0:29,16:45:58.09:0,58,957 0/0:44,18:62:52.78:0,53,1443 0/0:42,14:56:55.37:0,55,1398 0/0:54,32:86:63.47:0,63,1721 0/0:41,23:64:9.92:0,10,1184 0/0:77,36:113:99:0,157,2532 0/0:56,21:77:99:0,156,1836 0/0:28,17:45:30.32:0,30,922 0/0:45,18:63:1.87:0,2,1316 0/1:45,31:76:27.46:27,0,1312 0/0:78,32:110:27.03:0,27,2341 0/0:46,22:68:66.60:0,67,1521 0/0:47,18:66:99:0,102,1525 0/0:47,27:74:40.99:0,41,1547 0/0:37,15:52:74.73:0,75,1202 0/0:53,20:73:83.93:0,84,1621 19 19304765 . A C 163.42 . AC=3;AF=0.036;AN=84;BaseQRankSum=-37.759;DP=9823;DS;Dels=0.00;FS=1928.393;HRun=3;HaplotypeScore=6.7227;InbreedingCoeff=-0.0370;MQ=59.42;MQ0=1;MQRankSum=-0.122;QD=0.22;ReadPosRankSum=-21.001 GT:AD:DP:GQ:PL 0/0:164,64:228:99:0,341,5179 0/0:175,65:240:99:0,282,5101 0/0:155,52:207:99:0,260,4643 0/0:89,159:250:26.03:0,26,2447 0/0:109,138:250:52.96:0,53,2973 0/0:147,102:250:99:0,296,4329 0/0:168,82:250:99:0,328,5042 0/0:128,122:250:79.39:0,79,3659 0/0:173,71:244:99:0,361,5199 0/0:170,64:234:99:0,280,4946 0/0:172,63:235:99:0,408,5390 0/0:170,45:215:99:0,407,5332 0/0:164,51:215:99:0,350,4900 0/0:155,68:224:99:0,382,4892 0/0:83,167:250:99:0,161,2073 0/0:169,63:232:99:0,300,5197 0/0:175,74:250:99:0,432,5533 0/0:160,62:222:99:0,270,4980 0/1:138,112:250:72.60:73,0,3820 0/0:136,109:250:99:0,309,4037 0/1:125,124:250:99:142,0,3476 0/0:184,66:250:99:0,444,5802 0/0:77,173:250:99:0,101,2174 0/0:141,107:249:99:0,276,4150 0/0:135,114:250:99:0,239,3951 0/0:150,100:250:99:0,222,4450 0/0:136,38:174:99:0,323,4222 0/0:142,55:198:99:0,250,4373 0/0:143,65:208:99:0,294,4396 0/0:164,72:236:99:0,389,5126 0/0:160,53:213:99:0,356,5113 0/0:143,106:250:99:0,288,3958 0/0:174,75:250:99:0,330,5304 0/0:152,77:230:99:0,290,4764 0/0:174,68:242:99:0,324,5550 0/0:176,69:245:99:0,327,5394 0/1:142,106:248:23.49:23,0,3996 0/0:186,63:250:99:0,472,5903 0/0:143,55:199:99:0,292,4578 0/0:158,66:225:99:0,378,4942 0/0:143,48:191:99:0,405,4529 0/0:163,55:218:99:0,320,4962 19 19304899 . G C 14078.71 . AC=10;AF=0.119;AN=84;BaseQRankSum=1.941;DP=4563;DS;Dels=0.00;FS=22.109;HRun=2;HaplotypeScore=2.8472;InbreedingCoeff=0.0919;MQ=59.46;MQ0=0;MQRankSum=-0.652;QD=16.64;ReadPosRankSum=1.211 GT:AD:DP:GQ:PL 0/0:81,0:81:99:0,229,2893 0/0:85,0:87:99:0,250,3153 0/0:72,0:72:99:0,208,2588 0/0:151,0:152:99:0,424,5691 0/0:170,0:170:99:0,454,6082 0/1:68,83:151:99:2628,0,2071 0/1:55,54:110:99:1715,0,1781 0/0:122,0:122:99:0,331,4471 0/0:103,0:103:99:0,274,3536 0/0:67,0:67:99:0,187,2375 0/0:80,0:80:99:0,235,2972 0/1:36,36:72:99:1051,0,1093 0/0:60,0:60:99:0,168,2052 0/1:41,36:77:99:1025,0,1277 0/0:250,0:250:99:0,680,8644 0/0:94,0:94:99:0,274,3429 0/0:91,0:91:99:0,256,3234 0/0:99,0:99:99:0,283,3559 0/0:147,0:148:99:0,394,4961 0/0:193,0:193:99:0,530,6617 0/0:168,0:168:99:0,457,5776 0/0:107,0:107:99:0,313,3897 0/0:197,0:197:99:0,524,7101 0/0:104,0:104:99:0,289,3952 0/1:66,56:122:99:1669,0,2009 0/0:107,0:107:99:0,307,4117 0/0:79,0:79:99:0,217,2741 0/1:38,53:91:99:1540,0,1092 0/0:80,0:80:99:0,223,2815 0/0:71,0:71:99:0,205,2576 0/1:45,38:83:99:1155,0,1380 0/0:180,0:180:99:0,515,6446 0/0:108,0:108:99:0,316,4010 0/1:41,24:65:99:733,0,1234 1/1:1,74:75:99:2563,174,0 0/0:93,1:94:99:0,232,2963 0/0:155,1:156:99:0,442,5534 0/0:73,0:73:99:0,214,2665 0/0:88,0:88:99:0,256,3248 0/0:90,0:90:99:0,253,3185 0/0:61,0:61:99:0,175,2161 0/0:85,0:85:99:0,247,3080 19 19327830 . A G 6.49 . AC=2;AF=0.024;AN=84;BaseQRankSum=-12.653;DP=4535;DS;Dels=0.01;FS=3049.241;HRun=4;HaplotypeScore=6.4259;InbreedingCoeff=-0.0244;MQ=59.36;MQ0=1;MQRankSum=5.849;QD=0.04;ReadPosRankSum=-21.739 GT:AD:DP:GQ:PL 0/0:54,14:68:45.04:0,45,1778 0/0:58,5:63:99:0,138,1924 0/0:61,8:69:99:0,148,2114 0/0:205,31:236:99:0,464,6974 0/0:174,22:196:99:0,374,6045 0/0:165,13:178:99:0,457,6095 0/0:117,17:134:99:0,142,3953 0/0:140,17:157:99:0,314,4817 0/1:56,19:75:28.59:29,0,1773 0/0:56,14:70:50.42:0,50,1785 0/0:52,6:59:99:0,138,1829 0/0:60,9:69:71.86:0,72,1890 0/0:52,11:63:23.46:0,23,1647 0/0:53,10:63:74.32:0,74,1636 0/0:181,32:213:99:0,346,5922 0/0:49,7:56:90.39:0,90,1683 0/0:65,9:74:99:0,134,2100 0/0:61,14:75:99:0,107,2007 0/0:132,22:154:99:0,131,4249 0/0:149,32:181:99:0,215,4855 0/0:142,20:163:99:0,206,4529 0/0:97,19:116:99:0,153,3163 0/0:212,3:215:99:0,604,7454 0/0:128,10:138:99:0,279,4388 0/0:165,17:182:99:0,408,5790 0/0:127,15:142:99:0,317,4515 0/0:32,8:40:65.69:0,66,1070 0/0:59,15:74:72.08:0,72,1774 0/0:54,10:64:99:0,135,1866 0/0:54,8:62:74.13:0,74,1825 0/0:59,10:69:99:0,154,1981 0/0:151,40:191:99:0,214,4936 0/0:99,10:109:99:0,246,3392 0/0:50,10:60:99:0,122,1709 0/0:50,5:55:88.33:0,88,1671 0/0:64,12:76:99:0,119,2086 0/0:123,29:153:99:0,122,3881 0/1:62,13:75:38.92:39,0,1861 0/0:51,1:52:99:0,141,1668 0/0:51,9:60:99:0,147,1723 0/0:58,11:69:99:0,105,1871 0/0:67,13:80:85.91:0,86,2104 19 19345802 . C T 3203.87 . 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A G 2759.93 . 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A C 1998.44 . 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A AC 1318.90 . 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G T 16879.55 . AC=21;AF=0.250;AN=84;BaseQRankSum=18.514;DP=2108;Dels=0.00;FS=9.688;HRun=0;HaplotypeScore=1.3446;InbreedingCoeff=0.0476;MQ=59.04;MQ0=0;MQRankSum=0.822;QD=17.47;ReadPosRankSum=0.416 GT:AD:DP:GQ:PL 0/0:44,1:46:78.72:0,79,1250 0/1:22,22:44:99:638,0,512 0/1:22,21:43:99:612,0,537 0/0:98,0:98:99:0,268,3181 0/0:78,0:78:99:0,199,2477 0/0:73,0:73:99:0,196,2346 0/0:51,0:51:99:0,123,1522 0/1:30,21:51:99:569,0,692 0/1:20,12:32:99:326,0,502 0/1:11,21:32:99:671,0,232 0/1:19,17:36:99:465,0,452 0/1:10,18:28:99:558,0,244 0/0:32,0:32:84.18:0,84,896 0/1:23,28:51:99:753,0,582 0/1:60,81:141:99:2197,0,1474 0/1:26,24:50:99:676,0,673 0/0:37,1:38:57.67:0,58,1052 0/0:29,0:29:78.20:0,78,862 0/0:70,0:70:99:0,186,2073 0/0:55,1:56:99:0,131,1650 1/1:0,65:66:99:2118,172,0 0/1:18,33:51:99:945,0,306 0/1:63,38:102:99:999,0,1776 0/0:36,0:36:96.28:0,96,1157 0/0:67,0:67:99:0,175,2119 0/0:60,0:60:99:0,165,1985 0/0:39,0:39:99:0,111,1247 0/0:38,0:38:99:0,111,1228 0/0:39,0:39:99:0,99,1142 0/0:40,0:40:99:0,105,1176 0/0:44,0:44:99:0,126,1376 1/1:0,61:61:99:1963,162,0 0/0:43,0:43:99:0,117,1305 0/1:20,30:50:99:845,0,519 0/0:33,0:33:81.23:0,81,950 0/1:19,17:36:99:478,0,495 0/1:23,26:51:99:736,0,507 0/0:33,0:34:90.18:0,90,983 1/1:1,40:41:81.85:1329,82,0 0/0:35,0:35:96.22:0,96,1054 0/0:31,0:31:87.23:0,87,960 0/0:32,0:32:84.20:0,84,947 19 19381062 . C T 730.27 . 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G A 4265.65 . 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A G 781.22 . AC=14;AF=0.167;AN=84;BaseQRankSum=3.125;DP=229;Dels=0.00;FS=0.799;HRun=1;HaplotypeScore=0.1778;InbreedingCoeff=0.3024;MQ=58.38;MQ0=0;MQRankSum=0.074;QD=16.98;ReadPosRankSum=-0.406 GT:AD:DP:GQ:PL 1/1:0,3:3:9.03:118,9,0 0/0:7,0:7:18.05:0,18,215 0/1:0,2:2:0.97:62,6,0 0/0:6,0:6:15.05:0,15,198 0/0:10,0:10:30.06:0,30,334 0/0:6,0:6:18.06:0,18,227 0/1:2,3:5:63.39:104,0,63 0/0:5,0:5:15.05:0,15,191 0/0:5,0:5:15.05:0,15,181 0/0:2,0:2:6.02:0,6,73 0/0:2,0:2:6.02:0,6,74 0/0:4,0:4:12.01:0,12,128 0/1:2,6:8:41.83:202,0,42 0/0:4,0:4:12.04:0,12,148 0/0:22,0:22:54.17:0,54,678 0/0:7,0:7:21.05:0,21,243 0/1:0,1:1:1.76:40,3,0 0/0:3,0:3:9.03:0,9,115 0/0:5,0:5:15.05:0,15,185 0/0:9,0:9:27.08:0,27,335 0/0:8,0:8:24.07:0,24,292 0/0:7,0:7:18.04:0,18,199 0/0:11,0:11:33.10:0,33,405 0/0:5,0:5:15.04:0,15,174 0/1:3,2:5:59.52:60,0,101 0/1:0,2:2:0.97:76,6,0 0/0:1,0:1:3.01:0,3,39 0/0:6,0:6:18.06:0,18,227 0/1:2,2:4:29.55:54,0,30 0/1:2,1:3:30.29:30,0,63 0/0:4,0:4:9.03:0,9,103 0/0:8,0:8:24.08:0,24,301 0/1:1,2:3:22.53:62,0,23 0/0:5,0:5:15.05:0,15,185 0/0:4,0:4:12.04:0,12,146 0/0:7,0:7:21.06:0,21,246 0/0:5,0:5:12.01:0,12,131 0/0:6,0:6:18.06:0,18,224 0/0:7,0:7:21.06:0,21,255 0/1:4,3:8:60.51:61,0,90 0/0:2,0:2:6.02:0,6,73 1/1:0,2:2:6.02:78,6,0 19 19741326 . G A 1324.74 . 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TG T 417.26 . 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T G 27.68 . 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G C 5051.12 . 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A C 748.36 . 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G A 832.74 . 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G A 2151.21 . 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A G 6927.69 . 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A T 22024.72 . 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T C 5147.02 . 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C T 63975.81 . 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G A 56.40 . 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T G 91.55 . 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C T 52.66 . 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T G 7653.45 . 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G C 11195.68 . 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G A 2871.30 . 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C G 36.84 . 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T C 16029.54 . 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G T 43164.94 . 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G A 6815.67 . 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T C 186756.96 . 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T G 190096.61 . 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C T 21223.06 . 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A G 5784.34 . 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C T 24386.23 . 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G A 6707.43 . 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T C 4142.52 . 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G A 2375.32 . 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A G 13306.29 . 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G A 11305.38 . 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C T 6393.57 . 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C A 17769.33 . 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C T 484.86 . 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T C 10327.18 . 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C T 14483.40 . 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G A 1143.24 . 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A G 404.71 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.882;DP=1579;Dels=0.00;FS=2.287;HRun=0;HaplotypeScore=1.5819;InbreedingCoeff=-0.0120;MQ=58.44;MQ0=0;MQRankSum=2.020;QD=17.60;ReadPosRankSum=-0.342 GT:AD:DP:GQ:PL 0/0:31,0:31:84.25:0,84,1007 0/0:31,0:31:90.27:0,90,1055 0/0:21,0:21:60.17:0,60,700 0/0:74,0:74:99:0,220,2516 0/0:67,0:67:99:0,190,2236 0/0:56,0:56:99:0,135,1689 0/0:43,0:43:99:0,114,1357 0/0:45,0:45:99:0,111,1324 0/0:36,0:36:96.27:0,96,1124 0/0:30,0:30:81.24:0,81,959 0/1:9,14:23:99:451,0,222 0/0:22,0:22:63.19:0,63,747 0/0:23,0:23:63.17:0,63,737 0/0:26,0:26:75.22:0,75,886 0/0:65,0:65:99:0,178,2041 0/0:34,0:34:99:0,99,1141 0/0:31,0:31:87.26:0,87,1033 0/0:29,0:29:87.25:0,87,1007 0/0:54,0:54:99:0,135,1640 0/0:57,0:57:99:0,156,1894 0/0:45,0:45:99:0,129,1517 0/0:37,0:37:99:0,102,1197 0/0:96,0:96:99:0,250,3019 0/0:45,0:45:99:0,111,1326 0/0:43,0:43:99:0,117,1409 0/0:41,0:41:99:0,102,1228 0/0:27,0:27:75.22:0,75,883 0/0:28,0:28:78.23:0,78,909 0/0:28,0:28:78.22:0,78,890 0/0:17,0:17:48.14:0,48,561 0/0:24,0:24:69.20:0,69,803 0/0:58,0:58:99:0,156,1869 0/0:45,0:45:99:0,129,1489 0/0:26,0:26:75.23:0,75,899 0/0:28,0:28:81.24:0,81,957 0/0:20,0:20:57.17:0,57,678 0/0:42,0:42:99:0,120,1393 0/0:34,0:34:99:0,99,1133 0/0:29,0:29:84.21:0,84,964 0/0:16,0:16:48.14:0,48,558 0/0:24,0:25:66.19:0,66,776 0/0:27,0:27:75.22:0,75,884 19 34868642 . A G 6819.33 . 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T C 1654.67 . AC=2;AF=0.024;AN=84;BaseQRankSum=4.229;DP=2770;Dels=0.00;FS=7.847;HRun=0;HaplotypeScore=1.2392;InbreedingCoeff=-0.0244;MQ=59.29;MQ0=0;MQRankSum=0.937;QD=15.32;ReadPosRankSum=-0.177 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,141,1747 0/0:46,0:46:99:0,129,1592 0/0:49,1:50:99:0,132,1659 0/0:99,0:99:99:0,262,3288 0/0:98,0:98:99:0,259,3346 0/0:68,0:68:99:0,193,2454 0/0:65,0:65:99:0,178,2261 0/0:50,0:50:99:0,135,1725 0/1:29,29:58:99:871,0,845 0/1:21,29:50:99:846,0,569 0/0:48,0:48:99:0,138,1693 0/0:47,0:47:99:0,123,1496 0/0:40,0:40:99:0,111,1375 0/0:52,0:52:99:0,150,1850 0/0:204,0:204:99:0,518,6451 0/0:63,0:63:99:0,178,2144 0/0:50,0:50:99:0,141,1734 0/0:47,0:47:99:0,141,1721 0/0:82,0:82:99:0,217,2673 0/0:96,0:96:99:0,259,3190 0/0:86,0:86:99:0,223,2758 0/0:60,0:60:99:0,162,1979 0/0:97,0:97:99:0,256,3280 0/0:76,0:76:99:0,208,2634 0/0:56,0:56:99:0,153,1942 0/0:61,0:61:99:0,156,2012 0/0:51,0:51:99:0,135,1669 0/0:51,0:51:99:0,150,1829 0/0:58,0:58:99:0,159,1960 0/0:45,0:46:99:0,120,1466 0/0:58,0:58:99:0,159,1951 0/0:86,0:86:99:0,232,2885 0/0:67,0:67:99:0,196,2365 0/0:41,0:41:99:0,120,1475 0/0:52,0:52:99:0,144,1772 0/0:47,0:47:99:0,132,1609 0/0:95,0:95:99:0,250,3107 0/0:70,0:70:99:0,184,2274 0/0:68,0:68:99:0,187,2320 0/0:67,0:67:99:0,190,2344 0/0:58,0:58:99:0,156,1913 0/0:50,0:50:99:0,141,1725 19 34916993 . C G 1076.84 . 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C A 1772.12 . 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C T 11843.48 . 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T C 1666.98 . 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G A 10591.42 . AC=17;AF=0.202;AN=84;BaseQRankSum=-14.200;DP=1847;Dels=0.00;FS=6.222;HRun=1;HaplotypeScore=1.2852;InbreedingCoeff=-0.1062;MQ=58.99;MQ0=0;MQRankSum=1.507;QD=13.77;ReadPosRankSum=0.337 GT:AD:DP:GQ:PL 0/1:15,21:36:99:650,0,404 0/0:31,0:31:90.28:0,90,1112 0/0:32,0:32:96.30:0,96,1191 0/1:42,39:81:99:1044,0,1292 0/1:31,28:59:99:826,0,1048 0/0:53,0:53:99:0,144,1920 0/0:45,0:45:99:0,126,1668 0/0:41,0:41:99:0,120,1537 1/1:0,35:35:99:1203,102,0 0/1:10,17:27:99:512,0,256 0/1:27,8:35:99:178,0,817 0/0:33,0:33:90.27:0,90,1093 0/0:25,0:25:72.23:0,72,905 0/0:31,0:31:84.26:0,84,1055 0/1:77,50:127:99:1347,0,2244 0/1:23,14:37:99:371,0,630 0/0:41,1:42:76.09:0,76,1301 0/0:27,0:27:81.25:0,81,990 0/1:30,28:58:99:792,0,863 0/1:34,38:72:99:1029,0,953 0/0:66,0:66:99:0,187,2244 0/0:39,0:39:99:0,102,1247 0/0:76,0:76:99:0,205,2681 0/0:31,0:31:93.28:0,93,1197 0/0:46,0:46:99:0,123,1657 0/0:54,0:54:99:0,150,1964 0/0:28,0:28:81.24:0,81,976 0/0:32,0:32:96.29:0,96,1164 0/1:15,10:25:99:281,0,458 0/0:29,0:29:84.23:0,84,1015 0/0:31,0:31:90.24:0,90,1064 0/0:87,0:87:99:0,232,2881 0/1:38,18:56:99:435,0,1115 0/1:10,12:22:99:371,0,264 0/0:32,0:32:90.28:0,90,1101 0/1:16,24:40:99:750,0,420 0/0:71,0:72:99:0,187,2301 0/0:26,0:26:69.21:0,69,860 0/0:43,0:43:99:0,126,1502 0/0:26,0:26:69.21:0,69,843 0/1:12,14:26:99:423,0,363 0/1:20,13:33:99:380,0,608 19 35790481 . C G 150.70 . 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G A 1975.76 . AC=13;AF=0.155;AN=84;BaseQRankSum=-3.326;DP=744;Dels=0.00;FS=4.343;HRun=1;HaplotypeScore=0.5891;InbreedingCoeff=-0.1836;MQ=59.17;MQ0=0;MQRankSum=0.184;QD=10.98;ReadPosRankSum=-1.045 GT:AD:DP:GQ:PL 0/0:18,0:18:51.16:0,51,640 0/0:13,0:13:33.10:0,33,408 0/1:8,2:10:49.29:49,0,243 0/0:51,0:51:99:0,120,1621 0/0:36,0:36:81.25:0,81,1094 0/1:8,10:18:99:254,0,242 0/0:18,0:18:39.13:0,39,534 0/1:21,9:30:99:185,0,591 0/0:14,0:14:39.12:0,39,494 0/0:15,0:15:42.13:0,42,524 0/0:11,0:12:30.09:0,30,379 0/1:6,3:9:70.98:71,0,193 0/0:18,0:18:51.16:0,51,632 0/1:5,5:10:95.47:95,0,165 0/0:46,0:46:99:0,102,1323 0/0:13,0:13:39.11:0,39,479 0/0:18,0:18:45.14:0,45,579 0/0:7,0:7:18.04:0,18,219 0/0:11,0:11:33.10:0,33,396 0/0:26,0:26:66.20:0,66,838 0/1:12,8:20:99:221,0,348 0/1:6,6:12:99:155,0,194 0/0:47,0:47:99:0,117,1566 0/0:18,0:18:45.14:0,45,598 0/0:27,0:27:72.24:0,72,976 0/0:22,0:22:63.19:0,63,829 0/1:6,5:11:99:158,0,197 0/0:13,0:13:30.08:0,30,379 0/1:5,5:10:99:154,0,155 0/1:2,7:9:50.81:234,0,51 0/0:10,0:10:27.09:0,27,344 0/0:18,0:18:48.15:0,48,619 0/1:7,11:18:99:309,0,183 0/0:7,0:7:21.07:0,21,269 0/0:12,0:12:33.10:0,33,401 0/0:17,0:17:48.15:0,48,608 0/0:12,0:12:30.09:0,30,379 0/0:16,0:16:42.13:0,42,528 0/0:12,0:12:30.09:0,30,364 0/1:3,4:7:95.09:97,0,95 0/0:17,0:17:42.11:0,42,506 0/1:11,5:16:99:142,0,341 19 35793589 . C T 17406.98 . 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G A 2925.28 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.197;DP=6124;DS;Dels=0.00;FS=10.010;HRun=0;HaplotypeScore=3.7182;InbreedingCoeff=-0.0120;MQ=58.49;MQ0=2;MQRankSum=0.958;QD=11.75;ReadPosRankSum=1.939 GT:AD:DP:GQ:PL 0/0:127,0:128:99:0,328,3861 0/0:120,0:120:99:0,319,3874 0/0:87,0:88:99:0,223,2706 0/0:241,0:241:99:0,650,7991 0/0:235,0:235:99:0,644,8033 0/0:241,0:241:99:0,629,7837 0/0:240,0:241:99:0,605,7598 0/1:139,109:249:99:2971,0,3903 0/0:126,0:126:99:0,352,4138 0/0:74,0:74:99:0,196,2323 0/0:78,0:78:99:0,214,2560 0/0:94,0:94:99:0,256,3041 0/0:64,0:64:99:0,177,2079 0/0:97,0:97:99:0,250,3031 0/0:227,0:228:99:0,602,7136 0/0:86,0:86:99:0,247,2890 0/0:100,0:100:99:0,268,3206 0/0:81,0:81:99:0,220,2603 0/0:189,0:191:99:0,487,5768 0/0:244,0:245:99:0,641,7594 0/0:199,0:199:99:0,517,6147 0/0:165,0:165:99:0,442,5219 0/0:241,0:241:99:0,653,8084 0/0:222,0:222:99:0,557,7023 0/0:240,0:240:99:0,641,8152 0/0:246,0:246:99:0,629,7910 0/0:82,0:82:99:0,226,2670 0/0:107,0:107:99:0,295,3477 0/0:83,0:83:99:0,223,2638 0/0:86,1:87:99:0,199,2640 0/0:68,1:69:99:0,196,2306 0/0:233,1:234:99:0,568,7147 0/0:162,0:162:99:0,421,4998 0/0:83,0:83:99:0,232,2718 0/0:102,0:102:99:0,277,3217 0/0:93,0:93:99:0,241,2886 0/0:227,0:227:99:0,596,7121 0/0:116,0:116:99:0,295,3524 0/0:111,0:111:99:0,310,3690 0/0:91,0:91:99:0,250,2875 0/0:73,1:75:99:0,168,2297 0/0:82,0:82:99:0,238,2776 19 35979385 . C T 1371.39 . 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G A 373.18 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.319;DP=1458;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.8505;InbreedingCoeff=-0.0120;MQ=59.14;MQ0=0;MQRankSum=3.072;QD=11.31;ReadPosRankSum=0.792 GT:AD:DP:GQ:PL 0/0:32,0:32:93.24:0,93,1057 0/0:30,0:30:90.23:0,90,988 0/0:23,0:23:63.18:0,63,737 0/0:65,0:65:99:0,190,2279 0/0:45,0:45:99:0,126,1516 0/0:34,0:34:90.28:0,90,1121 0/0:31,0:31:87.25:0,87,1051 0/0:35,0:35:99:0,99,1188 0/0:34,0:34:96.25:0,96,1064 0/0:23,0:23:60.17:0,60,693 0/0:34,0:34:99:0,102,1114 0/0:25,0:25:72.20:0,72,827 0/0:23,0:23:69.18:0,69,754 0/0:19,0:19:57.15:0,57,635 0/0:101,0:101:99:0,265,3001 0/0:30,0:30:87.21:0,87,959 0/0:36,0:36:99:0,102,1148 0/1:18,15:33:99:419,0,498 0/0:41,0:41:99:0,120,1342 0/0:38,0:38:99:0,99,1177 0/0:42,0:42:99:0,114,1316 0/0:23,0:23:63.17:0,63,734 0/0:62,0:62:99:0,178,2240 0/0:34,1:35:67.93:0,68,1132 0/0:39,0:39:99:0,108,1343 0/0:28,0:28:75.22:0,75,913 0/0:29,0:29:87.20:0,87,949 0/0:33,0:33:93.26:0,93,1074 0/0:23,0:23:60.16:0,60,688 0/0:40,0:40:99:0,114,1302 0/0:28,0:28:75.20:0,75,862 0/0:38,0:38:96.23:0,96,1103 0/0:33,0:33:96.26:0,96,1077 0/0:29,0:29:84.23:0,84,952 0/0:30,0:30:78.13:0,78,826 0/0:24,0:24:72.17:0,72,773 0/0:29,0:29:84.21:0,84,939 0/0:37,0:37:99:0,102,1126 0/0:25,0:25:57.16:0,57,660 0/0:29,0:29:81.20:0,81,891 0/0:30,0:30:84.23:0,84,966 0/0:40,0:40:99:0,117,1281 19 36033460 . C T 10261.70 . AC=19;AF=0.226;AN=84;BaseQRankSum=-19.397;DP=1748;Dels=0.00;FS=6.079;HRun=1;HaplotypeScore=1.3740;InbreedingCoeff=0.1158;MQ=59.23;MQ0=0;MQRankSum=0.251;QD=15.84;ReadPosRankSum=1.238 GT:AD:DP:GQ:PL 0/1:23,19:42:99:531,0,625 0/1:20,13:33:99:364,0,651 0/1:17,11:28:99:291,0,553 0/1:51,31:82:99:841,0,1563 0/1:26,23:50:99:693,0,819 0/0:54,0:54:99:0,150,1999 0/0:41,0:41:99:0,120,1586 0/0:42,0:42:99:0,117,1550 0/0:43,0:43:99:0,120,1538 0/0:30,0:30:84.26:0,84,1043 0/0:34,0:34:96.30:0,96,1217 0/0:28,0:28:78.24:0,78,984 0/1:18,16:34:99:449,0,585 0/0:29,0:29:84.25:0,84,1037 0/0:122,0:122:99:0,334,4240 0/0:31,0:31:93.29:0,93,1148 0/0:42,0:42:99:0,123,1559 0/1:16,22:38:99:643,0,474 0/1:23,15:38:99:337,0,690 0/0:40,0:40:99:0,108,1389 0/0:55,0:56:99:0,132,1738 0/0:24,0:24:66.20:0,66,813 0/0:70,0:70:99:0,196,2670 1/1:0,43:43:99:1435,117,0 0/1:25,21:46:99:574,0,887 1/1:0,28:28:72.22:903,72,0 0/0:32,0:32:87.28:0,87,1116 0/0:39,0:39:99:0,114,1401 0/0:29,0:30:78.25:0,78,997 0/0:39,0:39:99:0,111,1407 0/0:30,0:30:90.29:0,90,1156 0/0:43,0:43:99:0,111,1431 0/0:40,0:40:99:0,117,1499 0/0:32,0:32:90.28:0,90,1129 0/1:14,19:33:99:561,0,412 0/0:43,0:43:99:0,129,1629 1/1:0,38:38:99:1245,102,0 0/1:31,19:50:99:539,0,940 0/1:13,16:29:99:452,0,383 0/0:36,1:37:72.21:0,72,1298 0/1:21,15:36:99:405,0,655 0/0:49,0:49:99:0,138,1734 19 36051333 . G T 3580.96 . AC=3;AF=0.036;AN=84;BaseQRankSum=-9.910;DP=3218;DS;Dels=0.00;FS=5.993;HRun=0;HaplotypeScore=2.8682;InbreedingCoeff=-0.0370;MQ=58.84;MQ0=0;MQRankSum=1.782;QD=13.62;ReadPosRankSum=1.114 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,150,1873 0/0:48,0:48:99:0,126,1579 0/0:45,0:45:99:0,120,1479 0/0:193,0:193:99:0,524,6890 0/1:87,74:161:99:2086,0,2661 0/0:142,0:142:99:0,379,4970 0/0:109,1:110:99:0,267,3947 0/0:120,0:120:99:0,313,4152 0/1:20,21:41:99:594,0,616 0/0:26,0:26:69.21:0,69,841 0/1:30,31:61:99:901,0,778 0/0:51,0:51:99:0,144,1754 0/0:44,0:44:99:0,114,1446 0/0:38,0:38:99:0,105,1324 0/0:190,0:190:99:0,491,6198 0/0:63,0:63:99:0,174,2145 0/0:53,0:53:99:0,150,1884 0/0:32,0:32:90.27:0,90,1107 0/0:104,2:106:99:0,265,3254 0/0:125,0:125:99:0,340,4244 0/0:103,0:103:99:0,283,3462 0/0:66,0:66:99:0,190,2330 0/0:172,0:172:99:0,476,6366 0/0:88,0:88:99:0,238,3115 0/0:115,0:115:99:0,313,4165 0/0:83,0:83:99:0,217,2886 0/0:29,0:29:81.24:0,81,995 0/0:47,0:47:99:0,126,1566 0/0:38,0:38:99:0,111,1368 0/0:54,0:54:99:0,147,1840 0/0:45,0:45:99:0,123,1573 0/0:129,0:129:99:0,358,4529 0/0:78,0:78:99:0,205,2548 0/0:50,0:51:99:0,141,1774 0/0:39,0:39:99:0,105,1303 0/0:49,0:49:99:0,135,1720 0/0:103,0:104:99:0,283,3441 0/0:52,0:52:99:0,141,1735 0/0:31,0:31:90.28:0,90,1109 0/0:53,0:53:99:0,135,1673 0/0:39,0:39:99:0,105,1317 0/0:53,0:53:99:0,150,1831 19 36051787 . G C 61.04 . AC=2;AF=0.024;AN=84;BaseQRankSum=-22.190;DP=4398;DS;Dels=0.01;FS=915.036;HRun=1;HaplotypeScore=10.3257;InbreedingCoeff=-0.0481;MQ=58.58;MQ0=0;MQRankSum=-0.553;QD=0.16;ReadPosRankSum=-17.224 GT:AD:DP:GQ:PL 0/0:52,28:80:87.32:0,87,1428 0/0:84,26:110:72.26:0,72,2247 0/0:44,28:72:20.81:0,21,1178 0/1:117,83:202:26.36:26,0,3133 0/1:81,89:170:95.90:96,0,2182 0/0:96,38:134:99:0,146,2198 0/0:81,31:112:99:0,105,2092 0/0:95,23:118:99:0,193,2474 0/0:59,20:79:70.05:0,70,1677 0/0:58,27:85:26.61:0,27,1631 0/0:73,34:107:0.66:0,1,2096 0/0:59,24:83:46.58:0,47,1475 0/0:56,15:71:99:0,135,1638 0/0:53,23:76:99:0,135,1666 0/0:153,20:173:99:0,373,4599 0/0:54,27:81:40:0,40,1516 0/0:61,27:88:72.50:0,73,1738 0/0:57,27:84:61.67:0,62,1705 0/0:81,35:116:4.26:0,4,2350 0/0:131,39:171:99:0,186,3346 0/0:78,26:107:75.48:0,75,2012 0/0:68,27:95:99:0,110,1686 0/0:108,87:196:1.93:3,0,2546 0/0:72,31:103:90.73:0,91,1780 0/0:85,40:125:79.07:0,79,2161 0/0:91,40:131:84.11:0,84,2214 0/0:51,21:72:99:0,101,1389 0/0:58,29:87:56.98:0,57,1665 0/0:53,21:74:53.96:0,54,1382 0/0:46,18:64:73.54:0,74,1305 0/0:51,20:71:73.36:0,73,1534 0/0:109,30:140:99:0,143,2865 0/0:63,32:95:35.34:0,35,1752 0/0:66,32:98:0.58:0,1,1602 0/0:56,21:77:37.96:0,38,1451 0/0:56,22:78:29.35:0,29,1538 0/0:82,33:115:99:0,99,2426 0/0:63,31:95:27.83:0,28,1538 0/0:54,19:73:99:0,119,1803 0/0:58,29:87:99:0,110,1578 0/0:44,12:56:50.01:0,50,1208 0/0:55,27:82:81.83:0,82,1761 19 36053400 . G A 744.95 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.103;DP=1291;Dels=0.00;FS=0.833;HRun=0;HaplotypeScore=0.9430;InbreedingCoeff=-0.0244;MQ=59.06;MQ0=0;MQRankSum=-0.177;QD=13.07;ReadPosRankSum=-1.269 GT:AD:DP:GQ:PL 0/0:25,0:25:72.20:0,72,846 0/0:21,0:21:60.16:0,60,715 0/0:32,0:32:96.26:0,96,1125 0/0:64,0:64:99:0,169,2162 0/0:57,0:57:99:0,165,2122 0/0:48,0:48:99:0,129,1684 0/0:36,0:36:99:0,99,1235 0/0:38,0:38:96.26:0,96,1228 0/0:30,0:30:87.23:0,87,1029 0/0:22,0:22:66.20:0,66,811 0/0:17,0:17:45.14:0,45,548 0/0:24,0:24:63.16:0,63,757 0/0:23,0:23:63.19:0,63,776 0/0:27,0:27:69.21:0,69,851 0/0:60,0:60:99:0,159,1935 0/0:35,0:35:96.25:0,96,1117 0/0:24,0:24:72.17:0,72,830 0/0:22,0:22:63.19:0,63,770 0/0:27,0:27:78.23:0,78,940 0/0:38,0:38:99:0,108,1311 0/0:29,0:29:72.19:0,72,863 0/0:23,0:23:60.18:0,60,742 0/0:73,0:73:99:0,205,2607 0/0:30,0:30:78.23:0,78,1004 0/0:35,0:35:93.30:0,93,1231 0/0:36,0:36:99:0,99,1242 0/0:20,0:20:51.13:0,51,608 0/0:19,0:19:51.15:0,51,621 0/0:20,0:21:54.16:0,54,666 0/0:23,0:23:66.19:0,66,785 0/0:20,0:20:60.18:0,60,741 0/0:31,0:31:78.24:0,78,999 0/0:31,0:31:87.22:0,87,1012 0/1:12,9:21:99:270,0,325 0/1:14,22:36:99:538,0,377 0/0:26,0:26:78.18:0,78,916 0/0:31,0:31:66.20:0,66,813 0/0:23,0:23:66.19:0,66,785 0/0:21,0:21:54.16:0,54,653 0/0:26,0:26:75.21:0,75,888 0/0:24,0:24:72.21:0,72,857 0/0:22,0:22:63.19:0,63,767 19 36207102 . G A 197.85 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.074;DP=900;Dels=0.00;FS=8.073;HRun=0;HaplotypeScore=0.8642;InbreedingCoeff=-0.0136;MQ=58.80;MQ0=0;MQRankSum=0.417;QD=16.49;ReadPosRankSum=-1.368 GT:AD:DP:GQ:PL 0/1:4,8:12:99:244,0,108 0/0:14,0:14:36.09:0,36,396 0/0:15,0:15:39.10:0,39,451 0/0:54,0:54:99:0,132,1693 0/0:43,0:43:99:0,114,1383 0/0:15,0:16:36.09:0,36,439 0/0:21,0:21:48.13:0,48,613 0/0:23,0:23:60.17:0,60,726 0/0:12,0:12:27.07:0,27,322 0/0:15,0:15:42.12:0,42,498 0/0:11,0:11:30.08:0,30,352 0/0:11,0:12:24.05:0,24,279 0/0:5,0:5:9.02:0,9,103 0/0:15,0:15:39.09:0,39,439 0/0:38,0:38:96.24:0,96,1091 0/0:14,0:14:42.12:0,42,479 0/0:12,0:12:24.07:0,24,275 0/0:22,0:22:51.11:0,51,581 0/0:33,0:33:84.21:0,84,940 0/0:39,0:39:99:0,102,1204 0/0:40,0:41:99:0,102,1183 0/0:36,0:36:78.21:0,78,942 0/0:44,0:44:99:0,108,1335 0/0:16,0:16:42.13:0,42,545 0/0:27,0:27:72.18:0,72,890 0/0:18,0:18:48.07:0,48,547 0/0:11,1:12:30.07:0,30,333 0/0:14,0:14:36.09:0,36,407 0/0:14,0:14:39.11:0,39,472 0/0:13,0:13:33.07:0,33,366 0/0:18,0:18:45.08:0,45,492 0/0:36,0:36:99:0,102,1141 0/0:29,0:29:75.15:0,75,834 0/0:12,0:12:24.06:0,24,269 0/0:13,0:13:36.10:0,36,425 0/0:15,0:15:42.07:0,42,455 0/0:24,0:24:66.16:0,66,734 0/0:17,0:17:48.09:0,48,546 0/0:14,0:14:39.09:0,39,431 0/0:25,0:25:69.19:0,69,808 0/0:16,0:16:42.12:0,42,486 0/0:20,0:20:51.11:0,51,574 19 36218478 . C T 10900.28 . 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G A 1699.38 . 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G A 1436.63 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.089;DP=2832;Dels=0.00;FS=1.207;HRun=1;HaplotypeScore=1.3217;InbreedingCoeff=-0.0244;MQ=59.08;MQ0=0;MQRankSum=0.983;QD=10.56;ReadPosRankSum=0.089 GT:AD:DP:GQ:PL 0/0:33,0:33:99:0,99,1083 0/0:53,0:53:99:0,141,1607 0/0:37,0:37:99:0,102,1143 0/0:197,0:197:99:0,493,6125 0/0:155,0:155:99:0,367,4686 0/0:93,0:93:99:0,232,2897 0/0:90,0:90:99:0,220,2744 0/0:96,0:96:99:0,256,3127 0/0:46,0:46:99:0,117,1348 0/0:34,0:34:93.22:0,93,1046 0/0:33,0:33:87.23:0,87,1008 0/0:48,0:48:99:0,135,1517 0/0:45,0:45:99:0,114,1327 0/0:46,0:46:99:0,129,1435 0/0:177,0:179:99:0,433,5038 0/0:56,0:56:99:0,147,1690 0/0:43,0:43:99:0,117,1345 0/0:32,0:32:93.23:0,93,1005 0/0:74,0:75:99:0,196,2237 0/0:79,0:79:99:0,190,2229 0/1:38,39:77:99:1047,0,955 0/0:44,0:44:99:0,117,1303 0/0:182,0:182:99:0,433,5593 0/0:77,0:77:99:0,196,2441 0/0:101,0:101:99:0,262,3296 0/0:87,0:87:99:0,217,2655 0/0:43,0:43:99:0,111,1306 0/0:58,0:58:99:0,162,1813 0/0:26,0:26:75.19:0,75,828 0/0:47,0:47:99:0,123,1400 0/0:50,0:50:99:0,141,1609 0/1:39,20:59:99:452,0,1065 0/0:51,0:51:99:0,126,1498 0/0:44,0:44:99:0,120,1329 0/0:49,0:50:99:0,126,1466 0/0:37,0:37:99:0,108,1221 0/0:82,0:82:99:0,195,2265 0/0:54,0:54:99:0,150,1683 0/0:43,0:43:99:0,129,1442 0/0:51,0:51:99:0,147,1589 0/0:55,0:55:99:0,153,1695 0/0:44,0:44:99:0,123,1423 19 36290977 . C T 1838.72 . 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G A 1167.69 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.563;DP=2140;Dels=0.00;FS=1.936;HRun=2;HaplotypeScore=0.7570;InbreedingCoeff=-0.0244;MQ=59.24;MQ0=0;MQRankSum=-1.588;QD=13.58;ReadPosRankSum=-0.138 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,123,1457 0/1:23,23:46:99:674,0,589 0/1:21,19:40:99:556,0,623 0/0:69,0:69:99:0,202,2490 0/0:76,0:76:99:0,214,2664 0/0:45,0:45:99:0,129,1603 0/0:57,0:57:99:0,166,2049 0/0:58,0:58:99:0,165,2024 0/0:44,0:44:99:0,129,1472 0/0:49,0:49:99:0,135,1567 0/0:50,0:50:99:0,132,1564 0/0:32,0:32:90.25:0,90,1073 0/0:30,0:30:84.23:0,84,976 0/0:33,0:33:96.29:0,96,1171 0/0:152,0:153:99:0,406,4773 0/0:45,0:45:99:0,126,1466 0/0:50,0:50:99:0,150,1762 0/0:45,0:45:99:0,135,1556 0/0:68,0:68:99:0,190,2197 0/0:70,0:70:99:0,205,2358 0/0:61,0:61:99:0,171,2033 0/0:48,0:48:99:0,135,1601 0/0:88,0:88:99:0,250,3119 0/0:42,0:42:99:0,117,1471 0/0:61,0:61:99:0,159,1997 0/0:36,0:36:99:0,102,1298 0/0:31,0:31:84.23:0,84,969 0/0:33,0:33:90.23:0,90,1030 0/0:30,0:30:90.22:0,90,1006 0/0:59,0:59:99:0,165,1935 0/0:33,0:33:99:0,99,1160 0/0:60,0:60:99:0,159,1910 0/0:54,0:54:99:0,150,1692 0/0:40,0:40:99:0,114,1382 0/0:41,0:41:99:0,120,1359 0/0:40,0:40:99:0,117,1378 0/0:72,0:72:99:0,196,2289 0/0:54,0:54:99:0,150,1730 0/0:34,0:34:99:0,99,1175 0/0:47,0:47:99:0,138,1586 0/0:29,0:29:84.24:0,84,988 0/0:42,0:42:99:0,120,1403 19 36322376 . A C 517.90 . 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T C 1149.34 . AC=5;AF=0.060;AN=84;BaseQRankSum=4.117;DP=580;Dels=0.00;FS=1.538;HRun=0;HaplotypeScore=0.3535;InbreedingCoeff=-0.0681;MQ=58.60;MQ0=0;MQRankSum=0.572;QD=14.93;ReadPosRankSum=-0.991 GT:AD:DP:GQ:PL 0/0:7,0:7:18.06:0,18,227 0/0:6,0:6:15.05:0,15,196 0/0:16,0:16:39.12:0,39,497 0/1:7,10:17:99:331,0,205 0/0:14,0:14:39.12:0,39,500 0/0:18,0:18:54.15:0,54,657 0/0:13,0:13:39.11:0,39,478 0/0:15,0:15:45.13:0,45,553 0/0:19,0:19:54.17:0,54,670 0/1:3,6:9:88.96:145,0,89 0/0:10,0:10:30.09:0,30,370 0/0:9,0:9:24.07:0,24,301 0/0:8,0:8:18.06:0,18,237 0/0:11,0:11:30.09:0,30,371 0/0:48,0:48:99:0,129,1600 0/1:5,8:13:99:254,0,132 0/0:5,0:5:15.05:0,15,184 0/0:10,0:10:30.09:0,30,372 0/0:26,0:26:72.22:0,72,873 0/0:19,0:20:51.16:0,51,635 0/0:17,0:17:42.12:0,42,506 0/1:9,6:15:99:173,0,254 0/1:12,11:23:99:344,0,381 0/0:17,0:17:45.14:0,45,563 0/0:15,0:15:39.12:0,39,488 0/0:9,0:9:27.08:0,27,333 0/0:9,0:9:27.08:0,27,326 0/0:5,0:5:15.04:0,15,173 0/0:10,0:10:30.08:0,30,349 0/0:9,0:9:24.07:0,24,300 0/0:11,0:11:30.08:0,30,360 0/0:17,0:17:42.13:0,42,540 0/0:13,0:13:36.11:0,36,443 0/0:8,0:8:18.05:0,18,225 0/0:15,0:15:42.13:0,42,512 0/0:17,0:17:51.13:0,51,589 0/0:25,0:25:66.20:0,66,831 0/0:9,0:9:27.09:0,27,340 0/0:17,0:17:48.15:0,48,591 0/0:11,0:11:33.10:0,33,397 0/0:3,0:3:6.02:0,6,75 0/0:11,0:11:30.09:0,30,376 19 36339063 . G A 7063.25 . 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G C 6567.23 . AC=6;AF=0.071;AN=84;BaseQRankSum=-6.241;DP=4519;DS;Dels=0.00;FS=4.634;HRun=0;HaplotypeScore=2.7409;InbreedingCoeff=-0.0769;MQ=59.37;MQ0=0;MQRankSum=-0.292;QD=11.34;ReadPosRankSum=-1.041 GT:AD:DP:GQ:PL 0/0:116,0:116:99:0,310,3901 0/0:94,0:94:99:0,250,3080 0/0:76,0:76:99:0,196,2476 0/1:89,57:146:99:1498,0,2571 0/0:180,0:181:99:0,448,5978 0/0:120,0:120:99:0,316,4124 0/0:91,0:92:99:0,229,3032 0/0:126,0:126:99:0,301,3971 0/0:99,0:99:99:0,256,3237 0/0:77,0:77:99:0,211,2568 0/0:86,0:86:99:0,217,2735 0/0:95,0:95:99:0,262,3243 0/0:78,0:78:99:0,211,2654 0/0:88,0:88:99:0,226,2864 0/0:248,1:249:99:0,644,8040 0/1:37,33:70:99:909,0,1132 0/0:94,0:94:99:0,244,3064 0/0:79,0:79:99:0,211,2635 0/0:149,0:149:99:0,391,4748 0/0:146,0:146:99:0,370,4642 0/0:147,0:148:99:0,376,4576 0/0:75,0:75:99:0,193,2435 0/1:81,60:141:99:1715,0,2489 0/0:129,0:129:99:0,316,4156 0/0:152,0:152:99:0,379,5088 0/0:128,0:128:99:0,328,4304 0/1:41,24:65:99:536,0,1163 0/0:78,1:79:99:0,193,2407 0/1:43,35:79:99:993,0,1031 0/0:86,0:86:99:0,238,2961 0/0:98,0:99:99:0,268,3405 0/0:135,0:135:99:0,346,4392 0/1:42,35:78:99:917,0,1174 0/0:88,0:88:99:0,232,2894 0/0:107,0:107:99:0,262,3286 0/0:93,0:94:99:0,247,3124 0/0:124,0:125:99:0,316,3887 0/0:87,0:87:99:0,229,2802 0/0:94,0:94:99:0,253,3225 0/0:105,0:105:99:0,277,3468 0/0:79,0:79:99:0,220,2774 0/0:85,0:85:99:0,229,2901 19 36349752 . G A 6625.15 . AC=6;AF=0.071;AN=84;BaseQRankSum=-9.588;DP=4413;DS;Dels=0.00;FS=1.014;HRun=1;HaplotypeScore=3.0480;InbreedingCoeff=-0.0769;MQ=59.38;MQ0=0;MQRankSum=0.926;QD=11.60;ReadPosRankSum=0.542 GT:AD:DP:GQ:PL 0/0:111,0:111:99:0,301,3751 0/0:94,0:94:99:0,244,3020 0/0:75,0:75:99:0,184,2370 0/1:89,57:146:99:1370,0,2481 0/0:176,0:176:99:0,445,5984 0/0:119,0:119:99:0,280,3643 0/0:95,0:95:99:0,238,3095 0/0:112,0:112:99:0,277,3701 0/0:95,0:95:99:0,247,3077 0/0:73,0:74:99:0,193,2433 0/0:84,0:84:99:0,211,2691 0/0:95,1:97:99:0,234,3178 0/0:77,0:78:99:0,199,2484 0/0:83,0:83:99:0,217,2725 0/0:250,0:250:99:0,635,7984 0/1:36,35:72:99:1009,0,1016 0/0:87,0:87:99:0,238,2955 0/0:81,0:83:99:0,223,2776 0/0:138,0:139:99:0,355,4452 0/0:138,0:139:99:0,334,4283 0/0:134,0:134:99:0,343,4293 0/0:82,0:82:99:0,199,2486 0/1:77,56:134:99:1543,0,2309 0/0:113,0:113:99:0,289,3777 0/0:138,0:138:99:0,334,4457 0/0:138,0:138:99:0,337,4467 0/1:39,24:63:99:580,0,1029 0/0:84,0:84:99:0,199,2519 0/1:41,38:79:99:1084,0,1024 0/0:93,0:93:99:0,253,3150 0/0:83,0:83:99:0,223,2776 0/0:133,0:133:99:0,319,4023 0/1:38,38:77:99:1039,0,989 0/0:83,0:83:99:0,217,2742 0/0:96,0:96:99:0,238,3010 0/0:106,0:106:99:0,271,3428 0/0:119,0:119:99:0,295,3732 0/0:96,0:96:99:0,250,3163 0/0:101,0:103:99:0,253,3214 0/0:92,0:92:99:0,250,3115 0/0:69,0:69:99:0,184,2325 0/0:89,0:89:99:0,244,3039 19 36351935 . G T 3859.26 . AC=16;AF=0.190;AN=84;BaseQRankSum=1.513;DP=721;Dels=0.00;FS=0.347;HRun=0;HaplotypeScore=0.5689;InbreedingCoeff=-0.2388;MQ=58.40;MQ0=0;MQRankSum=4.858;QD=13.22;ReadPosRankSum=-0.142 GT:AD:DP:GQ:PL 0/0:10,0:10:24.07:0,24,291 0/1:6,4:10:59.74:60,0,171 0/1:8,6:14:99:139,0,217 0/1:16,26:42:99:808,0,422 0/0:37,0:37:99:0,111,1352 0/0:30,0:30:81.23:0,81,1028 0/1:7,11:18:99:323,0,203 0/0:16,0:16:45.13:0,45,559 0/0:15,0:15:45.11:0,45,506 0/0:13,0:13:36.08:0,36,412 0/0:15,0:15:42.11:0,42,492 0/0:6,0:6:18.03:0,18,199 0/0:14,0:14:39.11:0,39,459 0/0:12,0:12:30.07:0,30,328 0/0:48,0:48:99:0,138,1586 0/1:11,3:14:67.97:68,0,339 0/0:7,0:7:21.06:0,21,249 0/0:12,0:12:33.08:0,33,358 0/0:17,0:17:45.10:0,45,503 0/1:13,6:19:99:138,0,348 0/0:13,0:13:30.08:0,30,345 0/0:10,0:10:30.08:0,30,330 0/1:24,22:46:99:663,0,714 0/1:14,9:23:99:268,0,422 0/0:30,0:30:75.20:0,75,919 0/1:8,4:12:99:102,0,246 0/1:9,7:16:99:183,0,271 0/1:7,2:9:45.50:45,0,180 0/1:6,8:14:99:255,0,167 0/0:8,0:8:24.06:0,24,273 0/0:11,0:11:30.09:0,30,348 0/0:25,0:26:69.20:0,69,814 0/1:5,13:18:99:399,0,117 0/0:11,0:11:33.10:0,33,390 0/0:17,0:17:48.12:0,48,542 0/0:11,0:11:30.09:0,30,373 0/0:12,0:12:36.07:0,36,393 0/1:6,6:12:99:169,0,162 0/0:15,1:16:7.33:0,7,462 0/1:8,7:15:99:208,0,171 0/0:11,0:12:33.04:0,33,335 0/1:8,2:10:31.12:31,0,221 19 36387710 . C G 28.17 . AC=2;AF=0.024;AN=84;BaseQRankSum=-14.712;DP=1549;Dels=0.00;FS=453.318;HRun=1;HaplotypeScore=1.3986;InbreedingCoeff=-0.0528;MQ=58.17;MQ0=0;MQRankSum=0.278;QD=0.22;ReadPosRankSum=-8.611 GT:AD:DP:GQ:PL 0/0:27,2:29:72.20:0,72,841 0/0:16,0:16:48.15:0,48,598 0/0:22,2:24:33.69:0,34,738 0/0:71,20:91:63.89:0,64,2196 0/1:44,21:65:45.26:45,0,1476 0/1:44,16:61:44.21:44,0,1343 0/0:33,11:44:64.56:0,65,1056 0/0:42,13:55:88.62:0,89,1326 0/0:22,4:26:1.67:3,0,662 0/0:23,4:27:34.49:0,34,668 0/0:20,3:23:57.17:0,57,690 0/0:19,6:25:0.07:0,0,605 0/0:20,5:25:38.48:0,38,708 0/0:23,1:24:63.19:0,63,773 0/0:62,9:73:99:0,137,1961 0/0:25,2:27:44.79:0,45,872 0/0:23,8:31:10.07:0,10,740 0/0:14,1:16:39.12:0,39,471 0/0:37,7:45:99:0,107,1262 0/0:39,11:50:47.56:0,48,1371 0/0:33,5:39:10.72:0,11,1019 0/0:35,6:41:90.23:0,90,1060 0/0:61,27:88:14.38:0,14,1883 0/0:36,8:44:51.07:0,51,1213 0/0:54,12:66:42.74:0,43,1600 0/0:25,11:36:66.19:0,66,822 0/0:19,5:24:54.15:0,54,659 0/0:23,5:28:2.38:1,0,689 0/0:19,6:25:4.89:0,5,576 0/0:21,2:23:63.20:0,63,795 0/0:22,4:26:66.19:0,66,792 0/0:48,7:55:28.12:0,28,1455 0/0:27,5:32:41.85:0,42,926 0/0:33,4:37:88.41:0,88,1051 0/0:20,2:22:19.79:0,20,651 0/0:24,1:26:69.18:0,69,800 0/0:44,5:50:42.32:0,42,1517 0/0:20,3:23:57.17:0,57,705 0/0:23,1:24:69.22:0,69,864 0/0:21,3:24:38.46:0,38,641 0/0:15,1:16:42.13:0,42,536 0/0:20,3:23:54.12:0,54,628 19 36497727 . C T 83.03 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.187;DP=504;Dels=0.00;FS=2.206;HRun=0;HaplotypeScore=0.4534;InbreedingCoeff=-0.0395;MQ=58.88;MQ0=0;MQRankSum=0.506;QD=5.54;ReadPosRankSum=-0.053 GT:AD:DP:GQ:PL 0/0:12,0:12:30.07:0,30,371 0/0:5,0:5:12.04:0,12,146 0/0:9,0:9:27.08:0,27,325 0/0:25,0:25:72.19:0,72,885 0/0:31,0:31:84.26:0,84,1096 0/0:21,0:21:60.17:0,60,759 0/0:14,0:14:42.13:0,42,550 0/0:11,0:11:33.08:0,33,398 0/0:7,0:7:21.03:0,21,244 0/0:7,0:7:21.06:0,21,259 0/0:8,0:8:21.06:0,21,265 0/1:4,4:8:99:123,0,132 0/1:5,2:7:18.09:18,0,153 0/0:8,0:8:21.07:0,21,274 0/0:21,0:21:60.18:0,60,741 0/0:15,0:15:42.11:0,42,506 0/0:15,0:15:39.12:0,39,503 0/0:10,0:10:30.09:0,30,373 0/0:12,0:12:30.09:0,30,360 0/0:23,0:23:60.19:0,60,759 0/0:13,0:13:39.12:0,39,473 0/0:11,0:11:30.08:0,30,368 0/0:25,0:25:69.22:0,69,918 0/0:5,0:5:15.02:0,15,181 0/0:16,0:16:45.13:0,45,596 0/0:15,0:15:42.13:0,42,532 0/0:9,0:9:21.01:0,21,231 0/0:9,0:9:27.08:0,27,324 0/0:6,0:6:15.05:0,15,193 0/0:6,0:6:15.05:0,15,185 0/0:12,0:12:36.11:0,36,444 0/0:9,0:9:27.08:0,27,336 0/0:16,0:16:42.12:0,42,513 0/0:8,0:8:24.08:0,24,304 0/0:9,0:9:27.06:0,27,304 0/0:9,0:9:27.09:0,27,340 0/0:6,0:6:18.02:0,18,195 0/0:10,1:11:0.26:12,0,248 0/0:10,0:10:30.10:0,30,378 0/0:16,0:16:42.13:0,42,519 0/0:6,0:6:15.05:0,15,192 0/0:8,0:8:21.06:0,21,262 19 36497793 . C T 213.13 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.056;DP=230;Dels=0.00;FS=3.445;HRun=0;HaplotypeScore=0.1380;InbreedingCoeff=0.2558;MQ=58.23;MQ0=0;MQRankSum=0.033;QD=19.38;ReadPosRankSum=0.979 GT:AD:DP:GQ:PL 0/0:7,0:7:21.06:0,21,237 0/0:3,0:3:9.02:0,9,98 0/0:6,0:6:18.04:0,18,209 0/1:2,4:6:54.10:123,0,54 0/1:0,5:5:0.13:165,15,0 0/0:2,0:2:6.02:0,6,71 0/0:6,0:6:18.05:0,18,213 0/0:5,0:5:15.05:0,15,180 0/0:7,0:7:18.05:0,18,204 0/0:3,0:3:9.02:0,9,96 0/0:7,0:7:15.04:0,15,180 0/0:3,0:3:9.02:0,9,98 0/0:8,0:8:21.06:0,21,237 0/0:6,0:6:18.05:0,18,197 0/0:17,0:17:36.10:0,36,416 0/0:10,0:10:30.07:0,30,323 0/0:2,0:2:3.01:0,3,32 0/0:7,0:7:21.04:0,21,215 0/0:6,0:6:15.04:0,15,168 0/0:16,0:16:42.10:0,42,456 0/0:5,0:5:9.03:0,9,102 0/0:7,0:7:21.06:0,21,235 0/0:4,0:4:12.03:0,12,136 0/0:3,0:3:9.02:0,9,102 0/0:4,0:4:12.03:0,12,134 0/0:2,0:2:6.01:0,6,65 0/0:8,0:8:24.06:0,24,260 0/0:5,0:5:15.04:0,15,169 0/0:5,0:5:9.02:0,9,108 0/0:5,0:5:12.03:0,12,131 0/0:3,0:3:9.03:0,9,108 0/0:7,0:7:18.05:0,18,196 0/0:6,0:6:18.04:0,18,192 0/0:4,0:4:12.03:0,12,135 0/0:4,0:4:9.02:0,9,101 0/0:2,0:2:6.01:0,6,67 0/0:1,0:1:3.01:0,3,32 0/0:3,0:3:6:0,6,60 0/0:11,0:11:33.08:0,33,359 0/0:3,0:3:6.02:0,6,76 0/0:3,0:3:9.02:0,9,104 0/0:3,0:3:9.02:0,9,97 19 36590310 . G A 682.21 . AC=1;AF=0.012;AN=84;BaseQRankSum=5.074;DP=1406;Dels=0.00;FS=2.463;HRun=1;HaplotypeScore=0.5950;InbreedingCoeff=-0.0120;MQ=57.60;MQ0=0;MQRankSum=0.759;QD=13.64;ReadPosRankSum=0.547 GT:AD:DP:GQ:PL 0/0:33,0:33:96.24:0,96,1061 0/0:17,0:17:42.11:0,42,463 0/0:19,0:19:57.13:0,57,613 0/0:60,0:60:99:0,168,2006 0/1:25,25:50:99:728,0,727 0/0:29,0:29:84.24:0,84,980 0/0:32,0:32:84.23:0,84,993 0/0:25,0:25:69.21:0,69,834 0/0:29,0:29:84.21:0,84,915 0/0:33,0:33:93.22:0,93,1020 0/0:24,0:24:66.16:0,66,734 0/0:29,0:29:78.20:0,78,876 0/0:18,0:18:54.12:0,54,589 0/0:28,0:29:78.17:0,78,854 0/0:81,0:81:99:0,220,2454 0/0:36,0:36:99:0,108,1172 0/0:26,1:27:75.20:0,75,830 0/0:23,0:23:69.18:0,69,754 0/0:34,0:34:99:0,102,1111 0/0:59,0:59:99:0,159,1795 0/0:56,0:56:99:0,147,1682 0/0:37,0:37:99:0,99,1125 0/0:45,0:45:99:0,135,1623 0/0:20,0:20:57.16:0,57,665 0/0:36,0:36:99:0,105,1272 0/0:22,0:22:57.15:0,57,680 0/0:23,0:23:69.17:0,69,736 0/0:28,0:28:84.21:0,84,919 0/0:32,0:32:96.24:0,96,1039 0/0:36,0:36:96.26:0,96,1100 0/0:29,0:29:84.23:0,84,942 0/0:42,0:42:99:0,126,1408 0/0:32,0:32:84.21:0,84,938 0/0:32,0:32:96.23:0,96,1029 0/0:36,0:36:99:0,102,1136 0/0:39,0:39:99:0,108,1185 0/0:41,0:41:99:0,105,1152 0/0:21,0:21:57.15:0,57,627 0/0:31,0:31:87.17:0,87,933 0/0:32,1:33:90.22:0,90,994 0/0:19,0:19:51.14:0,51,589 0/0:29,0:29:87.23:0,87,963 19 36590329 . T C 16649.34 . AC=57;AF=0.679;AN=84;BaseQRankSum=4.622;DP=1016;Dels=0.00;FS=0.307;HRun=0;HaplotypeScore=1.4909;InbreedingCoeff=-0.0385;MQ=57.67;MQ0=0;MQRankSum=0.562;QD=18.64;ReadPosRankSum=0.710 GT:AD:DP:GQ:PL 0/0:14,0:14:33.09:0,33,377 0/1:7,6:14:99:151,0,161 1/1:0,18:18:45.12:514,45,0 0/1:17,22:39:99:522,0,266 0/1:18,13:32:99:363,0,444 1/1:0,27:27:69.21:859,69,0 0/1:10,8:18:99:200,0,279 1/1:1,20:21:25.81:673,26,0 0/1:12,12:24:99:335,0,227 0/1:9,13:22:99:317,0,147 1/1:0,16:16:33.09:378,33,0 0/1:6,12:19:99:280,0,102 1/1:0,12:12:30.07:333,30,0 0/1:15,8:24:99:190,0,347 0/0:57,0:58:99:0,114,1266 0/1:14,9:23:99:212,0,330 0/1:12,9:21:99:228,0,295 0/1:8,6:14:99:121,0,159 0/1:14,6:20:43.28:43,0,391 0/1:24,19:44:99:479,0,589 1/1:0,28:29:72.11:754,72,0 0/1:19,17:36:99:463,0,411 0/1:19,9:28:99:186,0,374 1/1:0,21:21:45.11:555,45,0 1/1:0,34:34:84.24:1025,84,0 0/1:17,7:24:99:147,0,337 1/1:0,21:21:48.12:561,48,0 1/1:0,21:21:54.15:615,54,0 1/1:0,20:20:48.11:531,48,0 0/1:14,12:26:99:245,0,295 1/1:0,20:20:51.11:567,51,0 1/1:0,37:37:93.24:1072,93,0 0/0:30,0:30:87.24:0,87,992 0/1:9,12:21:99:317,0,200 0/0:20,1:21:17.54:0,18,492 0/1:14,12:27:99:258,0,260 1/1:0,23:23:39.09:444,39,0 1/1:0,14:14:33.09:376,33,0 1/1:1,27:28:63.16:730,63,0 1/1:0,20:20:51.13:572,51,0 1/1:0,15:16:36.09:418,36,0 1/1:0,19:19:51.15:614,51,0 19 36594063 . C T 10580.38 . 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A C 53625.80 . 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C T 725.32 . 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C T 3810.71 . 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C T 971.64 . 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T G 176.77 . 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G A 675.70 . 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G A 2136.72 . 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G T 6968.37 . AC=5;AF=0.060;AN=84;BaseQRankSum=-22.037;DP=5895;DS;Dels=0.00;FS=2.383;HRun=2;HaplotypeScore=2.6647;InbreedingCoeff=-0.0633;MQ=59.52;MQ0=0;MQRankSum=2.012;QD=10.53;ReadPosRankSum=-2.316 GT:AD:DP:GQ:PL 0/1:57,43:100:99:1148,0,1652 0/1:65,40:105:99:1037,0,1826 0/0:86,0:86:99:0,226,2848 0/0:250,0:250:99:0,707,9452 0/0:250,0:250:99:0,716,9599 0/0:228,0:228:99:0,644,8567 0/0:170,0:170:99:0,497,6583 0/0:187,2:189:99:0,493,7054 0/0:108,0:109:99:0,298,3757 0/0:95,0:95:99:0,250,3183 0/0:85,1:86:99:0,195,2903 0/0:87,0:87:99:0,235,2996 0/0:108,0:108:99:0,280,3578 0/0:98,0:98:99:0,283,3559 0/1:141,99:240:99:2418,0,4183 0/1:57,45:102:99:1180,0,1579 0/1:69,46:115:99:1186,0,1961 0/0:93,0:93:99:0,265,3351 0/0:229,1:230:99:0,593,7479 0/0:210,0:210:99:0,554,6965 0/0:208,0:208:99:0,521,6701 0/0:166,1:167:99:0,428,5803 0/0:248,0:248:99:0,710,9582 0/0:181,0:182:99:0,506,6799 0/0:192,0:192:99:0,551,7324 0/0:209,0:209:99:0,584,7743 0/0:73,1:74:99:0,202,2564 0/0:85,0:85:99:0,238,2983 0/0:94,0:94:99:0,259,3303 0/0:99,1:100:99:0,268,3402 0/0:104,1:105:99:0,283,3581 0/0:194,0:194:99:0,491,6295 0/0:141,0:141:99:0,382,4789 0/0:99,0:99:99:0,280,3513 0/0:102,0:102:99:0,283,3603 0/0:100,0:100:99:0,271,3451 0/0:165,2:167:99:0,436,5495 0/0:88,0:88:99:0,244,3057 0/0:84,0:84:99:0,244,3075 0/0:104,0:104:99:0,277,3529 0/0:83,0:83:99:0,223,2788 0/0:117,1:118:99:0,287,3963 19 38782485 . G C 133.25 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.413;DP=1209;Dels=0.00;FS=3.747;HRun=0;HaplotypeScore=0.8311;InbreedingCoeff=-0.0121;MQ=58.35;MQ0=1;MQRankSum=-0.320;QD=7.84;ReadPosRankSum=-0.594 GT:AD:DP:GQ:PL 0/0:22,0:22:63.19:0,63,761 0/0:26,0:27:69.20:0,69,835 0/0:25,0:25:66.20:0,66,803 0/0:63,0:63:99:0,169,2148 0/0:44,0:44:99:0,123,1605 0/0:31,0:31:78.25:0,78,1019 0/0:30,0:30:75.19:0,75,919 0/0:30,0:30:84.26:0,84,1074 0/0:29,0:29:75.22:0,75,930 0/0:23,0:23:60.18:0,60,741 0/0:19,0:19:51.15:0,51,611 0/0:16,0:16:39.12:0,39,480 0/0:14,0:14:30.09:0,30,376 0/0:27,0:28:69.21:0,69,855 0/0:84,0:84:99:0,199,2421 0/0:16,0:17:42.13:0,42,531 0/0:20,0:20:57.17:0,57,676 0/0:28,0:28:81.24:0,81,993 0/0:30,0:30:78.22:0,78,941 0/0:56,0:56:99:0,147,1845 0/0:31,0:31:69.19:0,69,814 0/0:21,0:21:54.14:0,54,631 0/0:57,0:57:99:0,132,1715 0/0:20,0:20:51.14:0,51,647 0/0:27,0:27:75.22:0,75,958 0/0:28,0:28:72.23:0,72,940 0/0:17,0:17:45.14:0,45,549 0/0:26,0:26:72.19:0,72,836 0/0:18,0:18:45.13:0,45,544 0/0:32,0:33:84.24:0,84,1018 0/0:23,0:23:57.17:0,57,688 0/0:36,0:36:84.25:0,84,1080 0/0:24,0:24:66.19:0,66,825 0/0:21,0:21:57.18:0,57,708 0/0:22,0:22:54.16:0,54,676 0/0:23,0:23:66.20:0,66,803 0/0:39,0:39:99:0,99,1178 0/0:28,0:28:78.24:0,78,964 0/0:20,0:20:48.14:0,48,585 0/0:20,0:20:57.14:0,57,676 0/0:22,0:22:54.11:0,54,616 0/1:11,6:17:99:179,0,286 19 38782609 . A G 224.79 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.138;DP=1162;Dels=0.00;FS=1.313;HRun=1;HaplotypeScore=0.7290;InbreedingCoeff=-0.0121;MQ=59.08;MQ0=0;MQRankSum=-0.986;QD=10.70;ReadPosRankSum=0.243 GT:AD:DP:GQ:PL 0/0:22,1:23:57.14:0,57,666 0/0:20,0:20:51.16:0,51,635 0/0:19,0:19:57.17:0,57,672 0/0:43,0:44:99:0,126,1470 0/0:44,0:45:99:0,117,1446 0/0:27,0:27:72.21:0,72,868 0/0:24,0:24:54.16:0,54,668 0/0:38,0:38:99:0,105,1273 0/0:23,0:23:51.16:0,51,647 0/0:28,0:28:81.23:0,81,947 0/0:19,0:19:54.16:0,54,648 0/0:17,0:17:48.14:0,48,565 0/0:25,0:25:63.16:0,63,743 0/0:25,0:25:63.19:0,63,779 0/0:73,0:74:99:0,208,2460 0/0:24,0:24:72.18:0,72,828 0/0:25,0:25:66.19:0,66,784 0/0:26,0:26:75.21:0,75,857 0/0:24,0:24:63.18:0,63,750 0/0:42,0:42:99:0,108,1320 0/0:42,0:42:99:0,108,1305 0/1:12,9:21:99:271,0,281 0/0:37,0:39:99:0,108,1280 0/0:21,0:21:57.18:0,57,706 0/0:37,0:37:96.29:0,96,1191 0/0:37,0:37:99:0,102,1239 0/0:16,0:16:42.13:0,42,502 0/0:22,0:22:60.18:0,60,714 0/0:26,0:26:72.22:0,72,865 0/0:27,0:27:63.20:0,63,790 0/0:19,0:19:51.15:0,51,611 0/0:27,0:27:75.22:0,75,886 0/0:27,0:27:75.22:0,75,883 0/0:26,0:26:78.20:0,78,901 0/0:23,0:23:63.18:0,63,750 0/0:19,0:19:57.17:0,57,676 0/0:37,0:37:93.24:0,93,1121 0/0:28,1:29:72.21:0,72,855 0/0:16,0:16:48.14:0,48,558 0/0:23,0:23:54.16:0,54,665 0/0:22,0:22:63.15:0,63,717 0/0:14,0:14:36.10:0,36,410 19 38817876 . G A 6336.11 . AC=10;AF=0.119;AN=84;BaseQRankSum=7.044;DP=2174;Dels=0.00;FS=4.289;HRun=0;HaplotypeScore=1.5605;InbreedingCoeff=-0.1352;MQ=58.87;MQ0=0;MQRankSum=2.998;QD=13.89;ReadPosRankSum=0.312 GT:AD:DP:GQ:PL 0/1:16,16:32:99:457,0,404 0/1:12,21:33:99:583,0,287 0/1:13,20:33:99:580,0,304 0/0:130,1:131:99:0,367,4368 0/0:113,0:113:99:0,310,3727 0/0:76,0:76:99:0,190,2293 0/0:72,0:72:99:0,196,2372 0/0:60,0:60:99:0,165,1972 0/1:18,9:28:99:231,0,432 0/1:10,17:27:99:436,0,223 0/0:26,0:26:69.16:0,69,781 0/0:34,0:34:90.23:0,90,1016 0/0:32,0:32:87.18:0,87,950 0/1:12,14:26:99:315,0,313 0/0:123,1:126:99:0,331,3714 0/0:41,0:41:99:0,108,1181 0/0:37,1:38:99:0,102,1090 0/0:23,0:23:66.15:0,66,718 0/0:57,0:58:99:0,144,1588 0/0:97,0:97:99:0,247,2786 0/1:35,35:70:99:982,0,806 0/0:40,0:40:99:0,108,1221 0/0:142,0:142:99:0,376,4691 0/1:30,31:61:99:851,0,771 0/1:38,36:74:99:911,0,1120 0/0:63,0:63:99:0,169,2085 0/0:36,0:36:96.20:0,96,1050 0/0:48,0:48:99:0,138,1529 0/0:25,0:25:69.17:0,69,769 0/0:28,0:29:84.23:0,84,947 0/0:32,0:32:93.25:0,93,1044 0/1:34,38:72:99:989,0,860 0/0:48,0:48:99:0,129,1408 0/0:38,0:38:99:0,108,1186 0/0:20,1:21:23.99:0,24,588 0/0:33,0:33:87.23:0,87,986 0/0:56,0:56:99:0,150,1666 0/0:37,0:37:90.23:0,90,1014 0/0:28,0:28:81.19:0,81,884 0/0:39,0:39:99:0,111,1215 0/0:35,0:35:99:0,99,1106 0/0:41,0:41:99:0,111,1248 19 38817944 . G A 932.95 . AC=2;AF=0.024;AN=84;BaseQRankSum=0.898;DP=2347;Dels=0.00;FS=3.880;HRun=0;HaplotypeScore=1.7857;InbreedingCoeff=-0.0244;MQ=59.02;MQ0=0;MQRankSum=-0.579;QD=11.38;ReadPosRankSum=-0.432 GT:AD:DP:GQ:PL 0/0:33,0:33:96.28:0,96,1123 0/0:42,0:42:99:0,114,1295 0/0:34,1:35:58.45:0,58,1051 0/0:149,0:149:99:0,406,5031 0/0:132,0:132:99:0,379,4660 0/0:77,1:78:99:0,214,2557 0/0:62,0:62:99:0,175,2188 0/0:75,0:75:99:0,211,2542 0/0:39,0:39:99:0,108,1282 0/0:34,0:34:99:0,99,1141 0/0:33,0:33:90.26:0,90,1078 0/0:30,0:30:84.24:0,84,981 0/0:30,0:30:84.21:0,84,965 0/0:30,0:30:81.22:0,81,941 0/0:114,0:114:99:0,313,3645 0/0:38,0:38:99:0,114,1339 0/0:36,0:36:99:0,105,1207 0/0:29,0:29:84.24:0,84,987 0/0:66,0:66:99:0,177,2075 0/0:82,0:82:99:0,229,2657 0/0:78,0:79:99:0,205,2413 0/0:45,0:45:99:0,129,1472 0/0:172,0:172:99:0,469,5859 0/0:70,0:70:99:0,187,2300 0/0:99,0:99:99:0,271,3294 0/0:71,0:71:99:0,205,2538 0/0:37,0:37:99:0,105,1239 0/0:57,0:57:99:0,153,1807 0/0:23,0:23:69.18:0,69,795 0/1:16,19:35:99:560,0,442 0/0:35,0:35:96.26:0,96,1116 0/0:70,0:70:99:0,190,2213 0/1:31,16:47:99:435,0,817 0/0:35,0:35:99:0,99,1181 0/0:30,0:30:78.21:0,78,919 0/0:29,0:29:81.23:0,81,952 0/0:47,0:47:99:0,126,1503 0/0:43,0:43:99:0,126,1460 0/0:43,1:44:87.83:0,88,1327 0/0:52,0:52:99:0,144,1697 0/0:32,0:32:90.25:0,90,1055 0/0:28,0:28:78.18:0,78,878 19 38852384 . C A 741.70 . AC=4;AF=0.048;AN=84;BaseQRankSum=-4.839;DP=502;Dels=0.00;FS=2.491;HRun=0;HaplotypeScore=0.2668;InbreedingCoeff=-0.0540;MQ=58.55;MQ0=0;MQRankSum=0.374;QD=13.49;ReadPosRankSum=-0.710 GT:AD:DP:GQ:PL 0/1:3,9:12:76.42:289,0,76 0/1:3,4:7:93.03:109,0,93 0/0:8,0:8:24.06:0,24,284 0/0:22,0:22:39.12:0,39,490 0/0:22,0:22:48.15:0,48,637 0/0:18,0:18:48.15:0,48,615 0/0:16,0:16:42.12:0,42,520 0/0:20,0:20:48.14:0,48,622 0/0:8,0:8:21.07:0,21,270 0/0:3,0:3:9.03:0,9,113 0/0:8,0:8:21.07:0,21,263 0/0:6,0:6:15.05:0,15,187 0/0:9,0:9:27.08:0,27,331 0/0:11,0:11:24.06:0,24,286 0/1:14,12:26:99:323,0,402 0/1:6,4:10:99:107,0,198 0/0:14,0:14:39.12:0,39,477 0/0:10,0:10:27.07:0,27,322 0/0:7,0:7:18.06:0,18,227 0/0:16,0:16:42.13:0,42,516 0/0:17,0:17:42.12:0,42,497 0/0:8,0:8:21.06:0,21,254 0/0:20,0:20:60.18:0,60,795 0/0:10,0:10:21.06:0,21,256 0/0:17,0:17:42.12:0,42,539 0/0:15,0:15:42.13:0,42,557 0/0:10,0:10:24.08:0,24,298 0/0:10,0:10:30.09:0,30,362 0/0:8,0:8:24.08:0,24,306 0/0:11,0:11:27.09:0,27,341 0/0:9,0:9:24.08:0,24,304 0/0:17,0:17:42.11:0,42,504 0/0:13,0:13:36.11:0,36,450 0/0:7,0:7:21.07:0,21,260 0/0:7,0:7:21.06:0,21,254 0/0:10,0:10:27.08:0,27,330 0/0:11,0:11:27.08:0,27,332 0/0:11,0:11:33.09:0,33,393 0/0:10,0:10:30.09:0,30,374 0/0:7,0:7:12.04:0,12,150 0/0:8,0:8:21.06:0,21,256 0/0:13,0:13:33.10:0,33,401 19 38852453 . C T 403.83 . AC=4;AF=0.048;AN=84;BaseQRankSum=-3.247;DP=623;Dels=0.00;FS=9.356;HRun=0;HaplotypeScore=0.5643;InbreedingCoeff=-0.0512;MQ=58.89;MQ0=0;MQRankSum=0.375;QD=7.77;ReadPosRankSum=1.652 GT:AD:DP:GQ:PL 0/0:13,0:13:30.08:0,30,378 0/0:14,0:14:30.10:0,30,403 0/0:10,0:10:27.08:0,27,332 0/0:15,0:15:42.13:0,42,534 0/0:24,0:24:63.21:0,63,856 0/0:17,0:17:45.15:0,45,601 0/0:15,0:15:42.14:0,42,571 0/0:17,0:17:48.15:0,48,627 0/0:9,0:9:24.07:0,24,281 0/0:12,0:12:30.10:0,30,385 0/0:15,0:15:42.13:0,42,523 0/1:9,7:16:99:201,0,290 0/0:10,0:10:30.09:0,30,370 0/1:8,6:14:99:101,0,235 0/0:50,0:50:99:0,129,1593 0/0:21,0:21:60.18:0,60,741 0/0:11,0:11:27.08:0,27,352 0/0:13,0:13:39.10:0,39,469 0/0:24,0:24:66.19:0,66,795 0/0:14,0:14:42.12:0,42,508 0/0:16,0:16:39.10:0,39,467 0/0:14,0:14:36.11:0,36,450 0/0:22,0:22:63.19:0,63,793 0/0:10,0:10:24.08:0,24,338 0/0:18,0:18:51.17:0,51,696 0/0:13,0:13:36.11:0,36,472 0/0:7,0:7:21.06:0,21,258 0/0:10,0:10:24.08:0,24,317 0/0:10,0:10:27.08:0,27,321 0/0:5,0:5:15.04:0,15,173 0/0:18,0:18:45.14:0,45,570 0/0:14,0:14:39.12:0,39,498 0/0:15,0:15:45.12:0,45,534 0/0:13,0:13:30.09:0,30,370 0/0:6,0:6:15.05:0,15,196 0/0:12,0:12:30.09:0,30,379 0/0:20,0:20:48.13:0,48,593 0/0:14,0:14:36.10:0,36,438 0/0:14,0:14:33.10:0,33,416 0/1:6,5:11:99:113,0,201 0/1:8,3:11:74.69:75,0,203 0/0:16,0:16:45.12:0,45,541 19 38882863 . CCCT C 712.68 . AC=18;AF=0.214;AN=84;BaseQRankSum=8.486;DP=850;FS=6.214;HRun=0;HaplotypeScore=74.3367;InbreedingCoeff=-0.2892;MQ=58.80;MQ0=0;MQRankSum=-0.673;QD=2.20;ReadPosRankSum=0.515 GT:AD:DP:GQ:PL 0/1:12,1:13:12.10:12,0,418 0/0:14,0:14:21.06:0,21,318 0/0:10,0:10:12.04:0,12,211 0/0:25,1:26:15.60:0,16,710 0/1:26,2:29:60.25:60,0,599 0/0:19,0:18:27.08:0,27,466 0/0:26,1:25:1.72:3,0,562 0/1:22,1:22:6.14:6,0,626 0/1:8,0:8:26.88:27,0,193 0/1:19,3:22:67.92:68,0,597 0/0:17,0:17:31.62:0,32,507 0/1:15,0:15:11.95:12,0,411 0/0:16,0:16:15.05:0,15,301 0/1:13,4:17:93.61:94,0,209 0/0:58,1:59:69.05:0,69,1906 0/0:21,0:21:12.75:0,13,605 0/0:15,0:15:27.97:0,28,468 0/1:9,3:12:96.42:96,0,133 0/0:25,0:25:36.11:0,36,639 0/0:31,2:32:2.96:0,3,782 0/1:37,5:42:99:109,0,1230 0/1:16,2:18:57.30:57,0,370 0/0:38,0:38:54.17:0,54,944 0/1:12,2:10:51:51,0,167 0/0:19,0:18:18.53:0,19,334 0/0:13,1:14:15.05:0,15,262 0/0:16,0:16:33.11:0,33,609 0/0:16,0:17:9.10:0,9,501 0/0:9,0:9:15.05:0,15,294 0/0:17,0:17:18.05:0,18,304 0/0:9,0:9:21.07:0,21,393 0/0:22,1:23:17.55:0,18,737 0/1:19,1:20:6.26:6,0,511 0/1:12,2:14:24.19:24,0,197 0/1:21,3:24:68.74:69,0,648 0/0:13,0:13:30.10:0,30,603 0/0:43,1:44:36.53:0,37,1305 0/0:25,0:25:42.14:0,42,766 0/1:11,1:12:76.60:77,0,178 0/1:18,1:19:12.09:12,0,469 0/1:7,2:9:69.33:69,0,155 0/1:12,1:12:30.17:30,0,131 19 38893856 . G C 270.70 . AC=5;AF=0.060;AN=84;BaseQRankSum=-4.454;DP=462;Dels=0.00;FS=1.079;HRun=0;HaplotypeScore=0.4436;InbreedingCoeff=-0.0802;MQ=59.00;MQ0=0;MQRankSum=0.819;QD=8.46;ReadPosRankSum=-0.620 GT:AD:DP:GQ:PL 0/0:6,0:6:18.06:0,18,232 0/0:7,0:7:21.07:0,21,265 0/0:7,0:7:15.05:0,15,205 0/0:27,0:28:69.22:0,69,917 0/0:33,0:33:90.29:0,90,1199 0/0:23,0:23:63.18:0,63,843 0/0:15,0:15:42.14:0,42,562 0/0:14,0:14:39.13:0,39,517 0/0:7,0:7:15.05:0,15,207 0/0:6,0:6:15.05:0,15,184 0/0:4,0:4:12.04:0,12,146 0/0:1,0:1:3.01:0,3,34 0/0:2,0:2:6.02:0,6,74 0/1:5,4:9:99:111,0,162 0/0:22,0:22:57.18:0,57,733 0/0:7,0:7:21.07:0,21,266 0/0:7,0:7:18.06:0,18,228 0/0:3,0:3:9.02:0,9,107 0/0:17,0:17:45.14:0,45,573 0/0:20,0:20:54.15:0,54,673 0/0:17,0:17:45.13:0,45,554 0/1:4,5:9:99:125,0,128 0/0:38,0:38:99:0,105,1382 0/0:10,0:10:24.08:0,24,313 0/0:19,0:19:48.13:0,48,632 0/0:19,0:19:45.15:0,45,607 0/0:9,0:9:24.08:0,24,305 0/1:3,2:5:50.89:51,0,97 0/0:3,0:3:9.03:0,9,114 0/0:14,0:14:42.13:0,42,522 0/0:3,0:3:9.03:0,9,111 0/0:8,0:8:24.07:0,24,298 0/0:17,0:17:45.11:0,45,548 0/0:5,0:5:15.05:0,15,190 0/0:8,0:8:21.06:0,21,255 0/0:7,0:7:21.05:0,21,248 0/0:8,0:8:21.07:0,21,264 0/0:7,0:7:21.07:0,21,261 0/0:5,0:5:12.04:0,12,159 0/1:4,1:5:20.46:20,0,104 0/1:2,2:4:59.04:59,0,65 0/0:4,0:4:12.04:0,12,154 19 38894307 . G A 55.43 . AC=2;AF=0.026;AN=78;BaseQRankSum=-1.625;DP=141;Dels=0.00;FS=8.613;HRun=2;HaplotypeScore=0.0745;InbreedingCoeff=-0.1052;MQ=57.20;MQ0=0;MQRankSum=1.451;QD=5.04;ReadPosRankSum=-0.849 GT:AD:DP:GQ:PL 0/1:2,1:3:27.95:28,0,62 0/0:3,0:3:9.03:0,9,114 ./. 0/0:8,0:8:21.05:0,21,267 0/0:10,0:10:30.06:0,30,342 0/0:3,0:3:6.02:0,6,80 0/0:4,0:4:12.04:0,12,153 0/0:5,0:5:12.04:0,12,160 0/0:3,0:3:9.03:0,9,116 0/0:4,0:4:12.04:0,12,147 0/0:4,0:4:12.04:0,12,156 0/0:3,0:3:9.03:0,9,115 ./. 0/0:3,0:3:6.02:0,6,79 0/1:4,4:8:87.25:87,0,127 0/0:1,0:1:3.01:0,3,36 0/0:2,0:2:3.01:0,3,39 0/0:3,0:3:9.03:0,9,114 0/0:3,0:3:3:0,3,29 0/0:5,0:5:12.04:0,12,157 0/0:2,0:2:6.02:0,6,65 0/0:6,0:6:15.05:0,15,190 0/0:8,0:8:24.07:0,24,293 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.02:0,6,78 0/0:4,0:4:12.04:0,12,161 0/0:3,0:3:9.02:0,9,104 0/0:4,0:4:12.02:0,12,136 0/0:4,0:4:12.04:0,12,147 ./. 0/0:2,0:2:6.02:0,6,71 0/0:3,0:3:9.03:0,9,113 0/0:4,0:4:9.03:0,9,116 0/0:2,0:2:3.01:0,3,38 0/0:4,0:4:12.04:0,12,152 0/0:2,0:2:6.02:0,6,70 0/0:5,0:5:12.04:0,12,148 0/0:2,0:2:6.02:0,6,74 0/0:3,0:3:9.03:0,9,108 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:6.02:0,6,72 0/0:2,0:2:3.01:0,3,38 19 38896204 . T G 512.14 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.708;DP=2025;DS;Dels=0.00;FS=2.824;HRun=1;HaplotypeScore=2.3752;InbreedingCoeff=-0.0244;MQ=58.62;MQ0=0;MQRankSum=-0.436;QD=6.57;ReadPosRankSum=-1.082 GT:AD:DP:GQ:PL 0/0:42,2:44:81.19:0,81,942 0/0:36,3:40:78.22:0,78,938 0/0:43,1:44:99:0,111,1304 0/0:93,0:93:99:0,214,2631 0/0:80,0:80:99:0,193,2399 0/0:66,1:68:99:0,144,1797 0/0:41,0:41:99:0,102,1238 0/0:62,2:64:99:0,144,1731 0/0:38,2:40:93.26:0,93,1092 0/0:35,0:35:87.25:0,87,1037 0/0:35,1:36:72.21:0,72,860 0/0:40,0:40:87.26:0,87,1056 0/0:29,0:29:69.21:0,69,840 0/0:40,1:42:99:0,99,1199 0/0:132,0:134:99:0,313,3748 0/0:43,1:45:99:0,111,1342 0/0:37,1:38:78.22:0,78,924 0/1:20,11:31:99:268,0,599 0/1:26,19:47:99:307,0,637 0/0:71,1:72:99:0,184,2203 0/0:49,1:50:99:0,117,1399 0/0:43,0:43:99:0,105,1258 0/0:85,1:86:99:0,187,2282 0/0:38,0:38:96.27:0,96,1165 0/0:44,0:44:99:0,108,1301 0/0:34,0:35:81.25:0,81,1001 0/0:35,3:38:78.22:0,78,942 0/0:40,1:41:84.23:0,84,995 0/0:30,2:32:69.19:0,69,831 0/0:45,1:47:99:0,102,1185 0/0:32,1:34:87.24:0,87,1027 0/0:48,0:48:99:0,123,1475 0/0:42,3:45:99:0,108,1241 0/0:37,1:40:81.24:0,81,983 0/0:34,1:35:72.18:0,72,837 0/0:48,1:49:99:0,105,1247 0/0:55,0:56:99:0,153,1834 0/0:43,1:44:99:0,99,1200 0/0:41,2:44:93.26:0,93,1108 0/0:34,0:34:84.25:0,84,1006 0/0:31,0:31:69.21:0,69,828 0/0:46,1:48:99:0,120,1466 19 38896244 . C A 373.76 . AC=1;AF=0.012;AN=84;BaseQRankSum=-4.568;DP=2276;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.2745;InbreedingCoeff=-0.0120;MQ=59.28;MQ0=0;MQRankSum=-0.695;QD=9.34;ReadPosRankSum=0.140 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,108,1367 0/0:47,0:47:99:0,132,1675 0/0:47,0:47:99:0,138,1721 0/0:116,0:117:99:0,316,4200 0/0:93,0:93:99:0,247,3379 0/0:80,0:80:99:0,223,2975 0/0:60,0:60:99:0,166,2264 0/0:53,0:53:99:0,150,2029 0/0:54,0:54:99:0,153,1942 0/0:36,0:36:99:0,99,1233 0/0:38,0:38:99:0,111,1393 0/0:46,0:46:99:0,138,1732 0/0:32,0:32:90.28:0,90,1140 0/0:46,0:46:99:0,132,1665 0/0:159,0:159:99:0,421,5457 0/0:44,0:44:99:0,126,1583 0/1:23,17:40:99:420,0,758 0/0:36,0:36:99:0,105,1302 0/0:64,0:64:99:0,187,2332 0/0:77,0:77:99:0,214,2735 0/0:71,0:71:99:0,202,2556 0/0:49,0:49:99:0,138,1759 0/0:89,0:89:99:0,250,3393 0/0:49,0:49:99:0,126,1732 0/0:58,0:58:99:0,166,2236 0/0:47,0:47:99:0,138,1830 0/0:34,0:34:99:0,102,1263 0/0:38,0:38:99:0,111,1408 0/0:31,0:31:87.28:0,87,1100 0/0:46,0:46:99:0,129,1644 0/0:31,0:31:93.29:0,93,1164 0/0:67,0:67:99:0,184,2338 0/0:45,0:45:99:0,129,1634 0/0:35,0:35:99:0,105,1320 0/0:46,0:46:99:0,132,1662 0/0:49,0:49:99:0,147,1817 0/0:71,0:71:99:0,196,2460 0/0:41,0:41:99:0,117,1486 0/0:56,0:56:99:0,159,2001 0/0:42,0:42:99:0,123,1560 0/0:30,0:30:90.28:0,90,1124 0/0:41,1:42:99:0,120,1504 19 38899501 . C CAAG 2043.20 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.131;DP=1877;FS=0.654;HRun=0;HaplotypeScore=181.1874;InbreedingCoeff=-0.0244;MQ=58.88;MQ0=0;MQRankSum=0.239;QD=15.84;ReadPosRankSum=-1.731 GT:AD:DP:GQ:PL 0/0:26,0:26:60.20:0,60,848 0/0:27,0:28:69.20:0,69,970 0/0:29,0:29:57.15:0,57,779 0/0:122,0:125:99:0,301,4184 0/1:70,22:98:99:1430,0,1464 0/0:84,0:85:99:0,198,2731 0/0:71,0:70:99:0,126,2081 0/0:76,0:79:99:0,149,2027 0/0:16,0:16:39.13:0,39,560 0/0:19,0:20:48.13:0,48,666 0/0:34,0:35:96.27:0,96,1316 0/0:30,0:31:84.20:0,84,1114 0/0:22,0:22:57.17:0,57,790 0/0:24,0:24:54.17:0,54,758 0/0:86,1:87:99:0,147,2779 0/0:20,0:20:45.15:0,45,634 0/1:19,11:31:99:685,0,362 0/0:27,0:27:60.19:0,60,840 0/0:56,0:56:99:0,132,1873 0/0:62,0:64:99:0,156,2138 0/0:48,0:48:99:0,117,1670 0/0:47,0:48:99:0,105,1472 0/0:106,0:109:99:0,253,3480 0/0:57,0:63:99:0,158,2115 0/0:74,0:74:99:0,178,2469 0/0:62,0:62:99:0,135,1883 0/0:18,0:18:45.15:0,45,634 0/0:26,0:26:57.17:0,57,801 0/0:17,0:17:33.09:0,33,433 0/0:30,0:30:69.22:0,69,976 0/0:22,0:23:51.14:0,51,711 0/0:65,0:67:99:0,153,2068 0/0:57,0:58:99:0,129,1783 0/0:20,0:21:33.07:0,33,441 0/0:20,0:20:42.14:0,42,590 0/0:30,0:30:69.20:0,69,967 0/0:52,0:52:99:0,129,1789 0/0:15,0:15:27.07:0,27,355 0/0:27,0:28:63.14:0,63,849 0/0:31,0:31:72.22:0,72,988 0/0:31,0:33:76.75:0,77,1030 0/0:21,0:22:45.12:0,45,626 19 38903330 . G A 1300.26 . AC=3;AF=0.036;AN=84;BaseQRankSum=-0.868;DP=1125;Dels=0.00;FS=2.478;HRun=0;HaplotypeScore=0.6036;InbreedingCoeff=-0.0370;MQ=58.75;MQ0=0;MQRankSum=1.072;QD=12.27;ReadPosRankSum=0.357 GT:AD:DP:GQ:PL 0/0:30,0:30:84.23:0,84,982 0/0:16,0:16:42.12:0,42,480 0/0:24,0:24:63.17:0,63,750 0/0:50,0:50:99:0,126,1655 0/0:26,0:27:69.20:0,69,857 0/0:28,0:28:66.21:0,66,879 0/0:23,0:23:69.21:0,69,886 0/0:18,0:18:48.15:0,48,614 0/0:19,0:19:57.16:0,57,654 0/1:8,7:15:99:179,0,212 0/0:18,0:18:51.13:0,51,590 0/0:25,0:25:60.18:0,60,731 0/0:23,0:23:60.15:0,60,674 0/0:21,0:21:60.16:0,60,704 0/1:29,35:64:99:901,0,650 0/0:21,0:21:57.17:0,57,693 0/1:15,12:27:99:295,0,447 0/0:25,0:25:63.18:0,63,780 0/0:37,0:37:99:0,102,1183 0/0:42,0:42:99:0,120,1418 0/0:40,0:40:93.25:0,93,1120 0/0:29,0:29:81.21:0,81,953 0/0:53,0:53:99:0,138,1810 0/0:19,0:19:54.17:0,54,689 0/0:20,0:20:45.14:0,45,585 0/0:16,0:16:45.14:0,45,557 0/0:25,0:25:69.18:0,69,804 0/0:21,0:21:51.15:0,51,638 0/0:18,0:18:51.14:0,51,597 0/0:21,0:21:57.13:0,57,669 0/0:21,0:21:60.17:0,60,709 0/0:49,0:49:99:0,123,1461 0/0:35,0:35:96.26:0,96,1135 0/0:20,0:20:54.12:0,54,620 0/0:15,0:15:42.11:0,42,475 0/0:23,0:23:66.18:0,66,775 0/0:34,0:34:96.25:0,96,1089 0/0:25,0:25:72.22:0,72,871 0/0:20,0:20:57.11:0,57,625 0/0:22,0:22:57.14:0,57,660 0/0:22,0:22:60.15:0,60,686 0/0:24,0:24:69.18:0,69,794 19 38903399 . G A 33.79 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.767;DP=755;Dels=0.00;FS=2.439;HRun=1;HaplotypeScore=0.5947;InbreedingCoeff=-0.0124;MQ=58.77;MQ0=0;MQRankSum=1.325;QD=3.38;ReadPosRankSum=-0.503 GT:AD:DP:GQ:PL 0/0:13,0:13:39.10:0,39,467 0/0:15,0:15:45.14:0,45,558 0/0:15,0:15:45.14:0,45,555 0/0:24,0:24:69.22:0,69,903 0/0:25,0:25:75.24:0,75,986 0/0:15,0:15:42.14:0,42,563 0/0:13,0:13:39.12:0,39,506 0/0:15,0:15:45.15:0,45,597 0/0:10,0:10:27.08:0,27,336 0/0:13,0:13:33.11:0,33,426 0/1:7,3:10:79.99:80,0,232 0/0:12,0:12:33.10:0,33,416 0/0:13,0:13:39.12:0,39,482 0/0:11,0:11:33.10:0,33,413 0/0:54,0:55:99:0,144,1792 0/0:15,0:15:45.14:0,45,564 0/0:11,0:11:30.09:0,30,372 0/0:6,0:6:18.05:0,18,218 0/0:30,0:30:81.26:0,81,1029 0/0:26,0:26:75.24:0,75,967 0/0:26,0:26:66.21:0,66,839 0/0:19,0:19:54.17:0,54,673 0/0:29,0:29:84.27:0,84,1118 0/0:8,0:8:21.06:0,21,269 0/0:10,0:10:27.09:0,27,370 0/0:17,0:17:51.16:0,51,662 0/0:15,0:15:42.13:0,42,529 0/0:14,0:14:42.13:0,42,520 0/0:18,0:18:51.16:0,51,643 0/0:10,0:10:30.09:0,30,372 0/0:16,0:16:48.15:0,48,601 0/0:30,0:30:78.25:0,78,1006 0/0:23,0:23:66.20:0,66,814 0/0:17,0:17:51.16:0,51,642 0/0:10,0:10:30.10:0,30,383 0/0:15,0:15:45.14:0,45,570 0/0:22,0:22:63.18:0,63,777 0/0:18,0:18:48.15:0,48,610 0/0:19,0:19:51.16:0,51,654 0/0:22,0:22:63.20:0,63,789 0/0:26,0:26:75.23:0,75,933 0/0:24,0:24:69.22:0,69,874 19 38905683 . A G 761.07 . AC=10;AF=0.119;AN=84;BaseQRankSum=2.227;DP=441;Dels=0.00;FS=4.682;HRun=0;HaplotypeScore=0.5365;InbreedingCoeff=0.0288;MQ=58.67;MQ0=0;MQRankSum=2.182;QD=7.93;ReadPosRankSum=0.153 GT:AD:DP:GQ:PL 0/0:7,0:7:21.06:0,21,244 0/0:5,0:5:15.05:0,15,181 0/0:7,0:8:21.06:0,21,242 0/0:20,0:20:54.12:0,54,618 0/1:12,5:19:99:108,0,343 0/0:16,0:18:48.13:0,48,561 0/0:11,0:11:24.05:0,24,272 0/0:8,0:8:24.07:0,24,272 0/1:3,2:5:55.37:55,0,92 0/1:6,1:8:15.94:16,0,175 0/0:8,0:8:24.05:0,24,259 0/0:5,0:5:15.05:0,15,180 0/1:0,3:3:0.51:107,9,0 0/1:5,4:9:99:122,0,137 0/1:9,12:23:99:293,0,164 0/1:3,3:6:64.47:78,0,64 0/0:7,0:7:18.05:0,18,208 0/0:7,0:7:15.04:0,15,177 0/0:20,1:22:51.13:0,51,593 0/0:15,0:16:42.11:0,42,496 0/0:15,0:16:39.12:0,39,472 0/0:9,0:9:21.05:0,21,247 0/0:26,0:26:78.21:0,78,888 0/0:8,0:8:21.05:0,21,222 0/0:12,0:12:30.05:0,30,334 0/1:6,2:8:52.42:52,0,185 0/0:5,0:5:15.04:0,15,180 0/1:4,1:5:21.40:21,0,93 0/0:10,0:11:27.07:0,27,312 0/0:11,0:11:30.08:0,30,342 0/0:4,0:4:12.01:0,12,132 0/0:18,0:19:51.14:0,51,585 0/0:10,0:10:24.03:0,24,252 0/0:9,0:10:24.07:0,24,283 0/0:4,0:5:12.03:0,12,139 0/0:7,0:8:21.02:0,21,226 0/0:11,0:13:30.09:0,30,357 0/0:10,0:10:27.05:0,27,299 0/0:7,1:8:21.06:0,21,240 0/0:11,0:12:30.08:0,30,335 0/0:5,1:6:15.05:0,15,182 0/1:8,2:10:47.65:48,0,212 19 38905715 . G C 92.36 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.774;DP=377;Dels=0.00;FS=4.010;HRun=1;HaplotypeScore=0.4281;InbreedingCoeff=-0.0262;MQ=57.91;MQ0=0;MQRankSum=-0.721;QD=13.19;ReadPosRankSum=-1.168 GT:AD:DP:GQ:PL 0/0:5,0:5:12.04:0,12,147 0/0:5,0:5:12.03:0,12,137 0/0:6,0:6:15.04:0,15,184 0/0:17,0:17:48.15:0,48,620 0/0:10,0:10:27.08:0,27,347 0/0:10,0:10:27.09:0,27,343 0/0:10,0:10:27.08:0,27,336 0/0:3,0:3:9:0,9,96 0/0:5,0:5:15.04:0,15,165 0/0:5,0:5:15.04:0,15,178 0/0:6,0:6:12.03:0,12,138 0/0:5,0:5:12.03:0,12,139 0/0:4,0:4:9:0,9,90 0/0:7,0:7:21.06:0,21,250 0/0:26,0:27:60.15:0,60,688 0/0:7,0:7:21.06:0,21,230 0/0:5,0:5:15.04:0,15,175 0/0:6,0:6:18.04:0,18,198 0/0:9,0:9:24.07:0,24,288 0/0:20,0:20:45.13:0,45,556 0/0:9,0:10:27.08:0,27,324 0/0:9,0:9:21.04:0,21,241 0/0:21,0:21:60.19:0,60,758 0/0:4,0:4:6.02:0,6,70 0/0:10,0:10:27.09:0,27,344 0/0:12,0:12:33.10:0,33,410 0/0:6,0:6:18.05:0,18,216 0/1:2,5:7:39.15:138,0,39 0/0:4,0:4:12.03:0,12,138 0/0:5,1:6:15.04:0,15,170 0/0:7,0:7:15.04:0,15,173 0/0:17,1:18:11.12:0,11,467 0/0:8,0:8:21.06:0,21,253 0/0:12,0:12:24.07:0,24,301 0/0:9,0:9:24.06:0,24,272 0/0:9,0:9:21.06:0,21,261 0/0:9,0:9:24.06:0,24,288 0/0:12,0:12:30.08:0,30,354 0/0:8,0:8:21.06:0,21,245 0/0:4,0:4:12.01:0,12,127 0/0:7,0:7:18.04:0,18,191 0/0:13,0:13:36.09:0,36,409 19 38946182 . G A 30643.28 . AC=57;AF=0.679;AN=84;BaseQRankSum=-12.906;DP=1609;Dels=0.00;FS=1.435;HRun=0;HaplotypeScore=1.1969;InbreedingCoeff=-0.2554;MQ=58.64;MQ0=0;MQRankSum=-1.041;QD=20.99;ReadPosRankSum=1.823 GT:AD:DP:GQ:PL 1/1:0,23:23:63.17:730,63,0 0/1:7,17:25:99:509,0,171 0/1:12,12:24:99:349,0,324 0/1:31,33:65:99:925,0,800 1/1:0,48:49:99:1695,141,0 0/1:25,22:47:99:447,0,792 1/1:1,45:47:99:1559,132,0 0/1:29,18:47:99:483,0,954 1/1:0,35:37:90.27:1058,90,0 1/1:0,26:26:75.22:885,75,0 1/1:0,20:20:60.17:695,60,0 0/1:12,11:23:99:287,0,368 0/1:8,16:24:99:458,0,211 0/1:19,16:35:99:458,0,568 0/1:46,54:100:99:1499,0,1246 0/1:19,15:34:99:445,0,525 1/1:0,27:28:81.24:955,81,0 0/1:12,14:27:99:424,0,323 0/1:32,32:65:99:840,0,938 0/1:27,26:53:99:777,0,710 0/1:26,34:60:99:1013,0,686 1/1:0,43:43:99:1392,120,0 0/0:82,0:83:99:0,235,2991 0/1:18,22:40:99:467,0,557 0/0:66,0:66:99:0,178,2272 1/1:0,26:26:63.19:750,63,0 1/1:0,19:19:57.16:667,57,0 1/1:0,30:30:81.24:955,81,0 1/1:0,23:23:69.20:801,69,0 0/1:8,13:21:99:403,0,206 0/1:12,14:26:99:400,0,333 0/1:23,17:41:99:461,0,683 0/1:23,20:44:99:563,0,657 0/1:17,12:29:99:338,0,493 1/1:0,36:36:99:1175,99,0 0/1:11,17:28:99:459,0,275 1/1:0,47:48:99:1559,132,0 1/1:0,30:30:87.26:1017,87,0 1/1:0,31:32:87.24:1012,87,0 0/1:20,19:39:99:559,0,565 1/1:0,23:23:66.18:753,66,0 0/1:9,14:23:99:421,0,221 19 38959680 . C T 33823.15 . AC=32;AF=0.381;AN=84;BaseQRankSum=0.005;DP=2872;Dels=0.00;FS=12.160;HRun=1;HaplotypeScore=1.9699;InbreedingCoeff=-0.0096;MQ=59.34;MQ0=0;MQRankSum=-0.182;QD=18.31;ReadPosRankSum=1.254 GT:AD:DP:GQ:PL 0/0:62,0:62:99:0,168,2024 0/1:32,22:54:99:640,0,919 0/1:27,21:48:99:561,0,725 0/1:79,58:137:99:1528,0,2316 0/0:111,0:111:99:0,307,3855 0/1:59,39:98:99:1131,0,1691 0/0:77,0:77:99:0,205,2594 0/1:44,42:86:99:1244,0,1317 0/1:28,23:52:99:622,0,736 0/1:19,13:32:99:353,0,486 0/0:59,0:59:99:0,165,1953 0/0:49,0:49:99:0,132,1598 0/1:24,18:42:99:512,0,647 0/0:70,0:70:99:0,186,2230 1/1:0,149:149:99:4792,394,0 0/1:26,17:43:99:461,0,766 0/1:26,21:47:99:589,0,697 0/0:68,0:68:99:0,192,2202 0/1:42,43:85:99:1177,0,1116 0/1:51,54:105:99:1521,0,1248 0/1:36,39:76:99:1024,0,940 0/0:50,0:50:99:0,141,1680 1/1:0,125:125:99:4211,343,0 0/1:43,29:72:99:805,0,1209 1/1:0,88:88:99:3069,250,0 0/0:111,0:111:99:0,286,3599 0/0:43,0:43:99:0,126,1486 0/1:40,32:72:99:841,0,1187 0/0:40,0:41:99:0,111,1353 1/1:0,52:52:99:1730,141,0 0/1:17,25:42:99:731,0,492 0/1:40,43:83:99:1198,0,1125 1/1:0,51:51:99:1658,135,0 0/1:28,28:56:99:810,0,785 0/0:54,0:54:99:0,144,1810 0/1:37,31:68:99:806,0,1051 0/0:84,1:85:99:0,228,2745 0/0:46,0:46:99:0,120,1416 0/0:45,0:45:99:0,123,1494 0/1:29,12:41:99:287,0,854 0/0:54,0:54:99:0,141,1652 1/1:0,43:43:99:1521,126,0 19 38974094 . C G 36.94 . 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T C 23034.79 . AC=22;AF=0.262;AN=84;BaseQRankSum=-1.443;DP=2920;Dels=0.00;FS=0.964;HRun=0;HaplotypeScore=2.1472;InbreedingCoeff=0.0147;MQ=58.96;MQ0=0;MQRankSum=-1.262;QD=16.42;ReadPosRankSum=-2.112 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,129,1521 0/0:50,0:50:99:0,138,1668 0/0:42,0:42:99:0,120,1409 0/0:139,0:139:99:0,346,4319 0/0:100,0:100:99:0,265,3279 0/1:40,35:75:99:915,0,1210 0/0:68,1:69:99:0,166,2108 0/1:47,36:84:99:1029,0,1246 0/1:18,26:44:99:749,0,446 1/1:0,50:50:99:1530,129,0 0/0:55,1:56:99:0,159,1898 0/1:28,28:57:99:771,0,735 0/1:21,21:42:99:450,0,541 0/0:52,0:52:99:0,150,1754 1/1:0,196:197:99:5952,502,0 0/1:22,24:46:99:635,0,609 1/1:1,48:49:99:1587,107,0 0/0:43,0:44:99:0,114,1383 0/1:48,42:91:99:947,0,1308 0/1:47,39:86:99:1003,0,1324 0/1:54,57:112:99:1483,0,1459 0/0:70,0:70:99:0,178,2157 0/0:143,0:143:99:0,355,4463 0/1:25,41:67:99:1042,0,712 0/1:43,37:81:99:999,0,1260 0/1:33,11:44:99:227,0,868 0/0:57,0:57:99:0,159,1864 0/0:50,1:51:99:0,126,1525 0/0:37,0:37:96.28:0,96,1165 0/1:30,34:64:99:944,0,785 0/0:63,0:63:99:0,153,1891 0/1:45,53:99:99:1436,0,1205 0/1:43,24:68:99:616,0,1205 0/0:59,0:59:99:0,174,2038 0/0:51,0:51:99:0,150,1784 0/0:57,1:58:99:0,156,1862 0/0:84,0:84:99:0,226,2679 0/0:60,0:60:99:0,162,1940 0/0:71,0:72:99:0,193,2259 0/0:62,1:63:99:0,175,2107 0/0:51,0:51:99:0,141,1678 0/1:22,25:47:99:721,0,594 19 39002913 . G A 2523.06 . 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C T 371.34 . AC=4;AF=0.048;AN=84;BaseQRankSum=1.033;DP=473;Dels=0.00;FS=5.437;HRun=0;HaplotypeScore=0.4494;InbreedingCoeff=-0.0357;MQ=58.50;MQ0=0;MQRankSum=-0.003;QD=16.88;ReadPosRankSum=-0.046 GT:AD:DP:GQ:PL 0/0:5,0:5:12.02:0,12,134 0/0:9,0:9:27.07:0,27,300 0/0:6,0:6:18.05:0,18,200 0/0:16,0:16:45.12:0,45,511 0/0:19,0:19:57.08:0,57,600 0/0:9,0:9:27.06:0,27,302 0/0:7,0:7:21.06:0,21,246 0/0:17,0:17:42.13:0,42,518 0/1:1,6:7:14.45:161,0,14 0/1:1,3:4:24.94:95,0,25 0/0:9,0:9:27.07:0,27,306 0/1:2,5:7:51.21:143,0,51 0/1:2,2:4:23.47:60,0,23 0/0:10,0:10:27.04:0,27,279 0/0:26,0:26:63.09:0,63,663 0/0:11,0:11:33.08:0,33,348 0/0:6,0:6:18.03:0,18,179 0/0:5,0:5:15.04:0,15,171 0/0:23,0:23:69.17:0,69,768 0/0:20,0:20:54.14:0,54,620 0/0:17,0:17:45.08:0,45,494 0/0:8,0:8:24.06:0,24,260 0/0:23,0:23:63.19:0,63,764 0/0:9,0:9:27.08:0,27,337 0/0:12,0:12:33.09:0,33,388 0/0:10,0:10:30.04:0,30,324 0/0:2,0:2:6.02:0,6,65 0/0:11,0:11:27.04:0,27,297 0/0:6,0:6:18.04:0,18,196 0/0:11,0:11:33.09:0,33,380 0/0:11,0:11:33.08:0,33,357 0/0:15,0:15:36.08:0,36,398 0/0:15,0:15:39.10:0,39,430 0/0:13,0:13:36.09:0,36,398 0/0:11,0:11:33.09:0,33,370 0/0:6,0:6:18.04:0,18,191 0/0:6,0:6:18.03:0,18,187 0/0:11,0:11:33.09:0,33,373 0/0:10,0:10:27.06:0,27,291 0/0:21,0:21:60.14:0,60,645 0/0:11,0:11:30.09:0,30,352 0/0:14,0:14:42.09:0,42,448 19 39010053 . C T 198.43 . AC=3;AF=0.036;AN=84;BaseQRankSum=0.999;DP=449;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4798;InbreedingCoeff=-0.0485;MQ=58.29;MQ0=0;MQRankSum=0.376;QD=6.40;ReadPosRankSum=0.614 GT:AD:DP:GQ:PL 0/0:7,0:7:21.05:0,21,239 0/0:11,0:11:30.08:0,30,345 0/0:5,0:5:15.05:0,15,183 0/0:17,0:17:45.12:0,45,527 0/0:15,0:15:42.13:0,42,517 0/0:6,0:6:15.05:0,15,195 0/0:3,0:3:6.02:0,6,69 0/0:13,0:13:30.10:0,30,396 0/0:9,0:9:24.07:0,24,285 0/0:9,0:9:21.06:0,21,265 0/0:7,0:7:18.05:0,18,211 0/0:9,0:9:21.06:0,21,259 0/0:4,0:4:6.02:0,6,79 0/0:6,0:6:15.05:0,15,188 0/0:26,0:26:60.14:0,60,690 0/0:8,0:8:24.06:0,24,265 0/0:5,0:5:9.03:0,9,107 0/0:10,0:10:27.08:0,27,308 0/0:19,0:19:54.15:0,54,614 0/0:18,0:18:45.13:0,45,520 0/0:17,0:17:42.11:0,42,492 0/0:7,0:7:21.05:0,21,238 0/0:20,0:20:54.17:0,54,687 0/0:8,0:8:24.07:0,24,292 0/0:14,0:15:39.07:0,39,459 0/1:7,1:8:13.73:14,0,211 0/0:2,0:2:6.02:0,6,70 0/0:13,0:13:27.08:0,27,339 0/0:9,0:9:18.05:0,18,202 0/1:6,4:10:99:118,0,154 0/0:12,0:12:33.08:0,33,363 0/0:13,0:13:30.08:0,30,368 0/1:8,5:13:99:139,0,224 0/0:7,0:7:21.06:0,21,242 0/0:9,0:9:27.06:0,27,302 0/0:6,0:6:18.05:0,18,208 0/0:13,0:13:36.06:0,36,395 0/0:16,0:16:39.11:0,39,468 0/0:8,0:8:21.06:0,21,239 0/0:15,0:15:45.13:0,45,522 0/0:8,0:8:21.06:0,21,237 0/0:13,0:13:27.07:0,27,297 19 39019603 . CAGG C 12.10 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.768;DP=680;FS=1.889;HRun=0;HaplotypeScore=56.8137;InbreedingCoeff=-0.0422;MQ=59.15;MQ0=0;MQRankSum=0.506;QD=0.61;ReadPosRankSum=0.483 GT:AD:DP:GQ:PL 0/0:11,0:11:30.10:0,30,546 0/0:15,0:15:33.11:0,33,688 0/0:11,0:11:24.08:0,24,487 0/0:21,0:21:57.20:0,57,1188 0/0:28,0:28:69.24:0,69,1412 0/0:14,0:14:33.07:0,33,588 0/0:11,0:11:33.11:0,33,684 0/0:8,0:8:18.06:0,18,342 0/0:8,0:8:24.08:0,24,467 0/0:10,0:10:24.08:0,24,473 0/0:4,0:4:9.45:0,9,118 0/0:12,0:12:36.12:0,36,716 0/0:15,0:15:36.12:0,36,714 0/0:19,0:19:42.14:0,42,815 0/0:54,0:54:99:0,126,2531 0/0:12,0:12:27.09:0,27,534 0/1:6,1:7:26.47:26,0,260 0/0:15,0:15:33.10:0,33,651 0/0:25,0:25:66.22:0,66,1314 0/0:29,0:29:78.25:0,78,1526 0/0:26,0:26:57.20:0,57,1186 0/0:7,0:7:18.06:0,18,371 0/0:23,1:24:18.68:0,19,1165 0/0:9,0:9:21.07:0,21,435 0/0:20,0:20:48.16:0,48,1001 0/0:5,0:5:9.03:0,9,163 0/0:13,0:13:36.12:0,36,742 0/0:18,0:18:39.13:0,39,752 0/0:13,0:13:36.12:0,36,720 0/0:25,0:25:66.21:0,66,1225 0/0:13,0:13:27.09:0,27,505 0/0:20,0:20:54.18:0,54,1091 0/0:18,1:19:0.62:0,1,827 0/0:21,0:21:57.19:0,57,1123 0/0:16,0:16:36.12:0,36,745 0/0:14,0:14:39.13:0,39,814 0/0:29,0:29:72.24:0,72,1396 0/0:14,0:14:30.09:0,30,558 0/0:13,1:14:1.98:2,0,758 0/1:11,2:13:55.83:56,0,470 0/0:10,0:10:24.08:0,24,486 0/0:8,0:8:18.06:0,18,339 19 39116719 . A C 78.66 . AC=5;AF=0.060;AN=84;BaseQRankSum=-25.192;DP=4284;DS;Dels=0.00;FS=542.737;HRun=2;HaplotypeScore=2.6281;InbreedingCoeff=-0.0739;MQ=58.67;MQ0=0;MQRankSum=-1.186;QD=0.12;ReadPosRankSum=-5.341 GT:AD:DP:GQ:PL 0/0:35,41:76:48.88:0,49,984 0/0:44,31:76:93.13:0,93,1389 0/0:28,26:55:40.50:0,41,704 0/0:102,109:212:99:0,178,2864 0/0:71,91:164:81.66:0,82,2047 0/0:60,60:121:28.81:0,29,1493 0/0:71,59:130:48.48:0,48,1839 0/0:55,57:112:35.19:0,35,1322 0/0:46,29:77:63.17:0,63,1246 0/0:32,27:60:90.25:0,90,1028 0/0:32,32:64:93.25:0,93,1062 0/1:45,26:71:18.57:19,0,1221 0/0:37,33:71:87.19:0,87,957 0/0:37,40:77:52.12:0,52,1143 0/1:89,119:208:62.59:63,0,2376 0/0:34,35:69:39.99:0,40,918 0/0:48,31:80:69.05:0,69,1381 0/0:30,29:59:59.59:0,60,924 0/1:79,69:150:27.72:28,0,1989 0/0:82,72:154:99:0,124,2206 0/0:76,54:132:28.51:0,29,2041 0/0:50,46:96:90.99:0,91,1468 0/0:102,121:223:99:0,225,3106 0/0:70,51:121:99:0,122,1932 0/0:73,77:150:99:0,109,1994 0/0:72,53:127:93.57:0,94,1878 0/0:28,25:53:60.51:0,61,884 0/1:40,23:63:16.19:16,0,932 0/0:39,32:71:29.62:0,30,1162 0/0:42,41:83:99:0,112,1223 0/0:36,24:60:1.15:5,0,937 0/0:131,56:188:99:0,304,3506 0/0:66,49:115:99:0,128,1923 0/0:30,34:65:52.48:0,52,797 0/0:32,29:61:13.43:0,13,854 0/0:34,26:61:28.98:0,29,869 0/1:70,69:139:47.35:47,0,1790 0/0:52,38:90:52.64:0,53,1381 0/0:40,19:60:95.48:0,95,1081 0/0:45,37:82:66.90:0,67,1232 0/0:45,29:74:25.90:0,26,1157 0/0:43,40:84:98.61:0,99,1349 19 39191323 . C T 1460.77 . AC=1;AF=0.012;AN=84;BaseQRankSum=-9.474;DP=2668;Dels=0.00;FS=0.560;HRun=1;HaplotypeScore=1.2752;InbreedingCoeff=-0.0120;MQ=59.07;MQ0=0;MQRankSum=-0.109;QD=14.46;ReadPosRankSum=-1.486 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,147,1906 0/0:54,0:54:99:0,144,1877 0/0:54,0:54:99:0,147,1888 0/0:97,0:97:99:0,271,3618 0/0:63,0:64:99:0,184,2452 0/0:66,0:67:99:0,178,2418 0/0:50,0:50:99:0,144,1976 0/0:44,0:44:99:0,123,1633 0/0:54,0:55:99:0,138,1796 0/0:45,0:45:99:0,123,1573 0/0:50,0:50:99:0,135,1698 0/0:40,0:40:99:0,114,1428 0/0:43,0:43:99:0,111,1422 0/0:48,0:48:99:0,129,1644 0/0:165,0:166:99:0,412,5373 0/0:40,0:40:99:0,117,1464 0/0:57,0:57:99:0,156,1991 0/0:42,0:42:99:0,114,1432 0/0:88,0:88:99:0,238,3048 0/1:44,57:101:99:1507,0,1228 0/0:87,0:87:99:0,235,2944 0/0:77,0:77:99:0,199,2559 0/0:92,0:92:99:0,259,3519 0/0:61,0:61:99:0,169,2293 0/0:76,0:76:99:0,205,2791 0/0:61,0:61:99:0,172,2322 0/0:43,0:43:99:0,120,1536 0/0:56,0:56:99:0,153,1914 0/0:48,1:49:99:0,111,1741 0/0:50,0:50:99:0,132,1700 0/0:51,0:51:99:0,144,1828 0/0:100,0:100:99:0,247,3220 0/0:97,0:97:99:0,253,3205 0/0:52,0:52:99:0,144,1837 0/0:47,0:48:99:0,135,1694 0/0:53,0:53:99:0,144,1808 0/0:98,0:98:99:0,238,3058 0/0:44,0:44:99:0,123,1544 0/0:50,0:50:99:0,138,1758 0/0:64,0:64:99:0,181,2275 0/0:42,0:42:99:0,114,1425 0/0:54,0:54:99:0,147,1848 19 39191733 . C T 1879.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.336;DP=2178;Dels=0.00;FS=8.090;HRun=0;HaplotypeScore=1.4642;InbreedingCoeff=-0.0244;MQ=59.27;MQ0=0;MQRankSum=0.689;QD=9.26;ReadPosRankSum=-0.679 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,114,1305 0/0:36,0:36:96.24:0,96,1074 0/0:31,0:33:84.17:0,84,963 0/0:115,0:116:99:0,286,3626 0/0:82,0:82:99:0,229,2879 0/0:58,0:58:99:0,153,1909 0/0:54,0:54:99:0,138,1717 0/0:77,0:77:99:0,196,2513 0/0:37,0:37:99:0,99,1164 0/0:46,0:46:99:0,117,1341 0/0:34,0:34:99:0,99,1137 0/0:36,0:36:99:0,99,1162 0/0:39,0:39:93.26:0,93,1146 0/0:39,0:39:99:0,108,1235 0/1:92,70:165:99:1650,0,2149 0/0:31,0:31:84.24:0,84,1004 0/1:26,12:38:99:292,0,698 0/0:23,0:23:63.17:0,63,730 0/0:71,0:71:99:0,183,2107 0/0:71,0:71:99:0,187,2174 0/0:62,0:62:99:0,159,1822 0/0:57,0:57:99:0,147,1700 0/0:110,0:111:99:0,286,3653 0/0:59,0:59:99:0,162,1986 0/0:62,0:62:99:0,156,1954 0/0:55,0:55:99:0,150,1869 0/0:25,0:25:60.17:0,60,733 0/0:28,0:28:72.15:0,72,818 0/0:37,0:37:93.26:0,93,1104 0/0:41,0:41:99:0,108,1239 0/0:34,0:34:96.22:0,96,1065 0/0:87,0:87:99:0,217,2575 0/0:50,0:50:99:0,129,1475 0/0:31,0:31:90.25:0,90,1040 0/0:36,0:36:99:0,102,1180 0/0:36,0:37:96.27:0,96,1114 0/0:65,0:65:99:0,174,2040 0/0:48,0:49:99:0,120,1392 0/0:34,0:34:96.24:0,96,1101 0/0:33,0:33:90.20:0,90,1005 0/0:21,0:21:60.16:0,60,686 0/0:37,0:37:99:0,102,1167 19 39207742 . G A 297.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.708;DP=714;Dels=0.00;FS=1.291;HRun=0;HaplotypeScore=0.6711;InbreedingCoeff=-0.0251;MQ=57.77;MQ0=0;MQRankSum=-0.175;QD=8.76;ReadPosRankSum=-0.490 GT:AD:DP:GQ:PL 0/0:7,0:9:18.05:0,18,199 0/0:14,0:14:39.07:0,39,413 0/0:9,0:9:24.04:0,24,246 0/0:32,1:34:87.24:0,87,991 0/0:23,0:23:63.17:0,63,714 0/0:10,0:10:27.08:0,27,311 0/0:14,0:14:42.11:0,42,477 0/0:12,0:12:36.11:0,36,424 0/0:17,0:17:48.10:0,48,499 0/0:21,0:22:57.07:0,57,570 0/0:15,0:15:39.10:0,39,438 0/0:17,0:17:45.08:0,45,469 0/0:19,0:19:48.11:0,48,546 0/0:15,0:15:42.07:0,42,434 0/0:45,0:47:99:0,114,1247 0/0:18,0:18:48.09:0,48,508 0/0:13,0:15:39.07:0,39,405 0/0:11,0:12:30.05:0,30,310 0/0:19,0:19:54.09:0,54,565 0/0:37,0:39:99:0,105,1104 0/0:23,0:23:54.13:0,54,598 0/0:17,0:17:39.08:0,39,442 0/0:20,0:20:60.17:0,60,709 0/0:10,0:10:30.07:0,30,329 0/0:10,0:10:30.09:0,30,356 0/0:13,0:14:33.08:0,33,363 0/0:11,0:12:27.08:0,27,311 0/0:16,0:16:48.08:0,48,495 0/0:14,0:14:39.07:0,39,400 0/1:7,7:14:99:204,0,154 0/0:9,0:9:24.06:0,24,264 0/0:21,0:21:54.11:0,54,561 0/1:13,7:20:99:157,0,331 0/0:6,0:7:18.02:0,18,197 0/0:15,0:15:42.09:0,42,453 0/0:10,0:10:21.06:0,21,243 0/0:18,0:18:51.12:0,51,535 0/0:17,0:18:45.11:0,45,492 0/0:19,0:19:54.14:0,54,608 0/0:18,0:18:42.08:0,42,441 0/0:18,0:18:48.12:0,48,525 0/0:11,0:11:27.06:0,27,291 19 39307103 . C T 4041.91 . AC=9;AF=0.107;AN=84;BaseQRankSum=3.362;DP=1289;Dels=0.00;FS=10.164;HRun=0;HaplotypeScore=1.0479;InbreedingCoeff=0.1289;MQ=58.96;MQ0=0;MQRankSum=1.218;QD=14.86;ReadPosRankSum=1.545 GT:AD:DP:GQ:PL 0/0:19,0:19:54.15:0,54,630 0/0:15,0:15:39.12:0,39,482 0/0:37,0:37:99:0,102,1206 0/1:32,25:57:99:643,0,949 0/0:40,0:40:99:0,114,1477 0/0:33,0:33:93.24:0,93,1197 0/1:19,15:35:99:480,0,642 0/0:36,0:36:93.29:0,93,1210 0/0:21,0:21:54.15:0,54,654 0/0:20,0:20:51.14:0,51,612 0/0:24,0:24:54.16:0,54,692 0/0:25,0:25:72.21:0,72,881 0/0:15,0:15:39.12:0,39,491 0/0:29,0:29:87.24:0,87,1027 0/0:76,0:77:99:0,202,2421 0/0:16,0:16:45.12:0,45,520 0/0:32,0:33:84.25:0,84,1025 0/0:20,0:20:54.13:0,54,642 0/0:43,0:43:99:0,123,1455 0/0:49,0:49:99:0,126,1557 0/1:16,15:32:99:447,0,454 0/1:14,8:22:99:202,0,359 0/1:28,27:55:99:741,0,750 0/0:42,0:42:99:0,108,1383 0/0:39,0:39:99:0,105,1373 0/0:34,0:34:87.26:0,87,1136 0/0:18,0:18:45.11:0,45,523 0/0:23,0:23:57.16:0,57,707 0/0:20,0:20:54.16:0,54,662 0/1:11,12:23:99:369,0,286 1/1:0,19:19:57.18:712,57,0 0/0:42,0:42:99:0,108,1340 0/0:26,0:26:66.20:0,66,812 0/0:27,0:27:81.24:0,81,965 0/0:23,0:23:60.13:0,60,666 0/0:36,0:36:96.28:0,96,1182 0/0:42,0:43:99:0,108,1311 0/0:23,0:23:60.16:0,60,714 0/0:19,0:19:54.16:0,54,641 0/0:23,0:23:63.18:0,63,761 0/1:13,15:29:99:449,0,368 0/0:27,0:27:78.24:0,78,972 19 39322087 . T G 23355.90 . AC=44;AF=0.524;AN=84;BaseQRankSum=-1.203;DP=1861;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.2086;InbreedingCoeff=0.2364;MQ=58.59;MQ0=0;MQRankSum=-2.169;QD=20.24;ReadPosRankSum=-6.880 GT:AD:DP:GQ:PL 1/1:1,30:31:81.23:952,81,0 0/1:20,16:37:99:308,0,635 0/1:13,10:23:99:257,0,369 0/0:87,0:87:99:0,220,2609 0/1:31,37:68:99:1045,0,852 0/1:24,26:50:99:597,0,722 0/0:42,0:42:99:0,120,1464 0/1:31,18:49:99:501,0,844 1/1:0,33:33:84.24:987,84,0 1/1:1,37:38:99:1215,105,0 1/1:0,36:36:93.26:1099,93,0 0/1:11,13:24:99:391,0,252 0/1:12,14:26:99:304,0,331 1/1:0,32:32:84.24:973,84,0 0/0:111,0:111:99:0,274,3223 0/1:16,15:31:99:381,0,412 0/0:49,0:49:99:0,126,1523 1/1:0,39:39:99:1256,108,0 1/1:0,50:50:99:1458,126,0 0/1:36,32:68:99:810,0,973 0/1:29,24:53:99:587,0,734 0/0:55,0:55:99:0,150,1759 0/0:88,0:88:99:0,235,2790 0/0:41,0:41:99:0,108,1275 0/0:62,0:62:99:0,172,2080 0/0:39,0:39:99:0,108,1268 0/1:18,10:29:99:209,0,494 0/1:21,8:29:99:126,0,618 1/1:1,26:27:66.16:773,66,0 0/0:50,0:50:99:0,132,1592 0/0:43,0:44:99:0,111,1292 1/1:0,70:71:99:2025,174,0 0/0:39,0:39:99:0,111,1269 1/1:1,37:38:93.09:983,93,0 0/1:14,8:22:99:225,0,369 1/1:0,37:37:96.22:1101,96,0 1/1:0,43:43:93.27:1087,93,0 1/1:0,45:45:99:1482,129,0 1/1:0,35:35:90.26:1045,90,0 0/1:16,22:38:99:584,0,407 0/1:12,13:26:99:351,0,261 0/1:13,13:26:99:244,0,405 19 39408743 . A AG 154.13 . AC=12;AF=0.146;AN=82;BaseQRankSum=5.839;DP=567;FS=439.511;HRun=2;HaplotypeScore=38.8311;InbreedingCoeff=-0.2164;MQ=58.27;MQ0=0;MQRankSum=0.045;QD=0.94;ReadPosRankSum=-8.530 GT:AD:DP:GQ:PL 0/0:11,0:10:14.06:0,14,217 0/1:8,0:8:7.91:8,0,134 0/0:8,0:8:12.04:0,12,149 0/0:22,0:22:36.86:0,37,500 0/0:23,0:23:32.13:0,32,378 0/1:9,0:9:16.53:17,0,168 0/1:8,0:8:33.46:33,0,131 0/1:16,4:20:15.75:16,0,336 0/0:8,0:8:21.07:0,21,260 ./.:.:2:.:0,0,0 0/0:13,0:13:30.09:0,30,372 0/0:11,0:11:27.08:0,27,328 0/0:8,0:8:7.61:0,8,123 0/0:10,0:10:13.55:0,14,250 0/0:41,0:41:18.96:0,19,879 0/1:17,0:17:35.76:36,0,299 0/0:12,0:12:24.07:0,24,298 0/0:11,0:11:3:0,0,266 0/1:16,0:16:4.76:5,0,362 0/0:18,0:18:30.09:0,30,371 0/0:19,0:19:42.11:0,42,500 0/1:14,0:14:18.06:18,0,334 0/1:26,0:26:39.02:39,0,433 0/1:9,0:9:45.16:45,0,165 0/0:13,0:13:21.06:0,21,260 0/0:5,0:5:2.96:0,0,66 0/0:7,0:7:18.06:0,18,223 0/0:14,0:14:30.60:0,31,405 0/1:13,0:13:16.87:17,0,233 0/0:9,0:9:18.06:0,18,223 0/1:10,0:10:14.82:15,0,134 0/0:16,0:16:2.24:0,2,395 0/0:13,0:13:1.14:0,1,272 0/0:19,0:19:5.45:0,5,413 0/1:11,1:12:44.50:44,0,226 0/0:20,0:20:45.80:0,46,591 0/0:14,0:14:14.99:0,15,252 0/0:5,0:5:1.79:3,0,134 0/0:13,0:13:27.08:0,27,335 0/0:11,0:11:24.07:0,24,298 0/0:15,0:15:33.08:0,33,394 0/0:14,0:14:27.08:0,27,326 19 39408746 . T G 29.84 . AC=5;AF=0.061;AN=82;BaseQRankSum=-8.031;DP=522;Dels=0.01;FS=277.811;HRun=2;HaplotypeScore=1.0129;InbreedingCoeff=-0.0979;MQ=58.81;MQ0=0;MQRankSum=-0.573;QD=0.45;ReadPosRankSum=-8.409 GT:AD:DP:GQ:PL 0/0:7,4:11:18.06:0,18,218 0/0:4,3:7:11.52:0,12,119 0/0:6,2:8:15.05:0,15,178 0/0:14,7:21:39.09:0,39,456 0/0:11,8:19:33.10:0,33,399 0/0:6,3:9:12.92:0,13,141 0/0:4,0:4:12.03:0,12,143 0/0:13,2:15:39.12:0,39,466 0/0:8,0:8:24.07:0,24,286 ./. 0/0:11,1:12:33.10:0,33,397 0/0:9,1:10:27.08:0,27,330 0/0:3,3:6:9.02:0,9,99 0/0:7,3:10:21.06:0,21,254 0/0:28,11:39:4.41:0,4,839 0/1:11,6:17:22.32:22,0,332 0/0:8,2:10:24.08:0,24,298 0/0:8,3:11:1.60:4,0,251 0/0:11,5:16:26.90:0,27,350 0/0:12,6:18:33.10:0,33,391 0/0:14,3:17:42.13:0,42,512 0/0:10,4:14:1.70:0,2,284 0/1:13,11:24:35.28:35,0,366 0/0:5,3:8:7.75:0,8,108 0/0:7,4:11:21.07:0,21,259 0/1:2,3:5:12.66:13,0,63 0/0:6,0:6:18.05:0,18,210 0/0:11,2:13:8.44:0,8,370 0/0:7,4:11:20.02:0,20,201 0/0:6,2:8:18.06:0,18,217 0/1:4,3:8:19.31:19,0,129 0/0:12,4:16:3.85:0,4,379 0/0:8,4:12:20.52:0,21,237 0/0:13,4:17:34.99:0,35,424 0/1:7,5:12:31.70:32,0,188 0/0:16,3:19:45.14:0,45,539 0/0:7,3:11:18.05:0,18,213 0/0:5,1:6:14.78:0,15,153 0/0:10,1:11:30.09:0,30,357 0/0:9,3:12:27.07:0,27,319 0/0:11,1:13:33.09:0,33,394 0/0:9,2:11:27.08:0,27,322 19 39521669 . CAGTCAGAGACACAAATCTCAAT C 1753.93 . AC=4;AF=0.048;AN=84;BaseQRankSum=18.195;DP=8014;DS;FS=970.642;HRun=0;HaplotypeScore=2887.5984;InbreedingCoeff=-0.0500;MQ=59.15;MQ0=0;MQRankSum=17.742;QD=1.85;ReadPosRankSum=-19.286 GT:AD:DP:GQ:PL 0/0:177,0:177:99:0,530,45671 0/0:171,0:171:99:0,503,43249 0/0:155,0:155:99:0,461,39276 0/0:243,0:243:99:0,728,67494 0/0:245,0:245:99:0,735,64919 0/0:244,0:243:99:0,704,61792 0/1:179,68:246:99:117,0,48345 0/0:248,0:248:99:0,738,65871 0/0:153,0:153:99:0,452,40845 0/0:151,0:151:99:0,449,38489 0/0:152,0:152:99:0,458,37921 0/0:144,0:143:99:0,427,36848 0/0:144,0:144:99:0,433,37033 0/0:165,0:165:99:0,491,42072 0/0:249,0:249:99:0,743,53530 0/0:122,0:121:99:0,352,30916 0/0:194,0:193:99:0,575,50479 0/0:140,0:140:99:0,418,35900 0/0:248,0:248:99:0,731,59901 0/0:250,0:250:99:0,715,62472 0/0:250,0:250:99:0,711,60366 0/1:175,67:242:99:353,0,46079 0/1:130,120:250:99:1314,0,34135 0/0:223,0:220:99:0,645,59684 0/0:242,0:238:99:0,715,62931 0/0:224,0:223:99:0,659,57925 0/0:119,0:119:99:0,351,30461 0/0:167,0:167:99:0,473,41545 0/0:127,0:127:99:0,376,32797 0/0:153,0:153:99:0,461,39524 0/0:143,0:143:99:0,396,35436 0/0:249,0:249:99:0,737,62486 0/0:190,0:190:99:0,556,50457 0/0:186,0:186:99:0,554,47861 0/0:170,0:170:99:0,503,44185 0/0:175,0:175:99:0,527,46139 0/0:249,0:248:99:0,737,64154 0/1:165,45:210:66.50:66,0,41267 0/0:146,0:146:99:0,433,37355 0/0:160,0:160:99:0,473,40220 0/0:145,0:145:99:0,436,39800 0/0:152,0:152:99:0,455,40026 19 39521681 . CAAATCTCAAT C 1910.77 . AC=5;AF=0.060;AN=84;BaseQRankSum=14.189;DP=7208;DS;FS=1544.548;HRun=0;HaplotypeScore=1372.2291;InbreedingCoeff=-0.0633;MQ=59.20;MQ0=0;MQRankSum=15.341;QD=1.67;ReadPosRankSum=-23.574 GT:AD:DP:GQ:PL 0/0:156,0:156:99:0,455,22479 0/0:146,0:146:99:0,386,20631 0/0:131,0:131:99:0,330,18474 0/0:236,0:236:99:0,552,35069 0/0:214,0:214:99:0,626,30277 0/1:157,90:244:99:276,0,21525 0/1:235,0:232:99:205,0,24014 0/0:224,0:224:99:0,591,32196 0/0:137,0:137:99:0,370,20034 0/0:132,0:132:99:0,352,18980 0/0:123,0:123:99:0,334,17096 0/0:132,0:132:99:0,372,18615 0/0:125,0:125:99:0,340,18506 0/0:141,0:141:99:0,416,21105 0/0:204,0:204:99:0,588,26791 0/0:115,0:114:99:0,294,15868 0/0:171,0:171:99:0,494,24628 0/0:121,0:121:99:0,352,17083 0/0:209,0:209:99:0,599,29076 0/0:219,0:219:99:0,570,29322 0/0:211,0:211:99:0,572,28640 0/1:225,0:224:99:205,0,21704 0/1:250,0:250:99:1217,0,17857 0/0:203,0:201:99:0,564,29329 0/0:213,0:210:99:0,505,30750 0/0:197,0:194:99:0,443,26948 0/0:109,0:109:99:0,304,15464 0/0:148,0:148:99:0,375,19953 0/0:115,0:115:99:0,323,16083 0/0:135,0:135:99:0,391,19561 0/0:126,0:126:99:0,342,18203 0/0:231,0:231:99:0,577,30441 0/0:189,0:189:99:0,504,25419 0/0:160,0:160:99:0,435,22270 0/0:154,0:154:99:0,418,22013 0/0:157,0:157:99:0,457,21220 0/0:219,0:219:99:0,618,31522 0/1:187,0:187:99:114,0,19787 0/0:134,0:134:99:0,377,18206 0/0:143,0:143:99:0,400,19587 0/0:141,0:141:99:0,412,19634 0/0:143,0:143:99:0,340,19261 19 39521691 . T C 7453.02 . AC=34;AF=0.405;AN=84;BaseQRankSum=-22.862;DP=7822;DS;Dels=0.05;FS=3200.000;HRun=2;HaplotypeScore=101.1019;InbreedingCoeff=-0.6748;MQ=59.49;MQ0=0;MQRankSum=-1.265;QD=1.17;ReadPosRankSum=-38.959 GT:AD:DP:GQ:PL 0/1:118,54:172:99:194,0,3548 0/1:115,57:172:99:156,0,3300 0/1:99,45:144:99:151,0,3046 0/1:137,112:249:99:830,0,3870 0/1:123,127:250:99:1288,0,3543 0/0:124,12:136:99:0,305,4357 0/0:144,7:151:99:0,427,5198 0/1:158,92:250:35.09:35,0,4566 0/1:113,48:162:99:130,0,3461 0/1:103,51:154:99:183,0,3014 0/1:94,53:147:99:182,0,2747 0/0:97,46:143:13.85:0,14,2942 0/1:106,36:142:60.74:61,0,3232 0/1:121,45:166:87.69:88,0,3754 0/1:123,127:250:99:992,0,3643 0/1:86,37:123:41.99:42,0,2658 0/1:131,51:182:99:270,0,3918 0/1:86,36:122:13.68:14,0,2654 0/1:162,69:231:21.40:21,0,4984 0/1:146,104:250:99:472,0,4159 0/1:155,66:221:44.42:44,0,4600 0/0:130,9:139:99:0,360,4444 0/0:96,8:104:99:0,283,3337 0/1:164,78:242:99:121,0,4990 0/1:163,87:250:85.30:85,0,4950 0/1:157,82:240:25.53:26,0,4494 0/0:89,29:118:70.42:0,70,2907 0/1:100,51:151:99:165,0,3073 0/1:86,47:133:99:175,0,2625 0/1:108,41:149:7.81:8,0,3308 0/1:104,42:146:99:131,0,3256 0/1:130,120:250:99:478,0,3693 0/1:150,82:232:99:135,0,4605 0/1:121,52:173:99:154,0,3761 0/1:121,62:183:99:312,0,3653 0/1:103,45:150:88.72:89,0,3096 0/1:171,59:230:50.09:50,0,5209 0/0:113,5:118:99:0,334,3854 0/1:97,48:145:99:119,0,3038 0/1:105,49:154:99:165,0,3148 0/0:108,34:142:98.44:0,98,3332 0/1:109,56:166:87.24:87,0,3178 19 39521939 . A C 1322.34 . AC=27;AF=0.321;AN=84;BaseQRankSum=-25.960;DP=2407;Dels=0.00;FS=294.826;HRun=2;HaplotypeScore=3.2394;InbreedingCoeff=-0.4859;MQ=56.84;MQ0=0;MQRankSum=-1.884;QD=0.80;ReadPosRankSum=-5.079 GT:AD:DP:GQ:PL 0/1:20,20:40:24.65:25,0,536 0/0:17,21:38:30.41:0,30,529 0/0:11,15:26:0.43:0,0,252 0/1:67,83:150:7.87:8,0,1642 0/1:34,57:91:99:145,0,860 0/0:36,45:82:26.33:0,26,998 0/1:23,38:62:10.77:11,0,664 0/0:33,39:72:55.46:0,55,826 0/1:25,29:54:39.42:39,0,574 0/1:16,16:32:29.81:30,0,414 0/1:11,24:37:99:114,0,303 0/0:14,7:21:7.29:0,7,427 0/1:14,29:43:55.21:55,0,298 0/1:21,21:43:23.43:23,0,606 0/1:78,73:151:97.37:97,0,1990 0/1:16,18:34:40.35:40,0,291 0/0:23,25:48:27.41:0,27,653 0/0:25,24:49:63.13:0,63,709 0/1:36,50:86:99:209,0,914 0/0:46,42:92:56.79:0,57,1192 0/1:26,42:68:99:206,0,632 0/0:30,26:56:11.80:0,12,804 0/1:46,56:102:42.25:42,0,1110 0/1:30,48:78:77.46:77,0,808 0/1:35,46:81:15.19:15,0,814 0/0:46,28:74:99:0,112,1161 0/1:20,23:44:9.93:10,0,520 0/1:18,25:43:20.54:21,0,381 0/0:19,22:41:25.49:0,25,561 0/0:19,14:34:27.62:0,28,587 0/1:8,14:23:57.53:58,0,227 0/1:28,30:59:74.85:75,0,656 0/0:29,34:63:18.18:0,18,864 0/1:19,18:37:21.04:21,0,528 0/1:19,18:37:21.70:22,0,505 0/1:19,18:37:16.95:17,0,437 0/1:48,30:78:62.15:62,0,1346 0/1:32,23:56:12.20:12,0,831 0/1:18,18:36:43.30:43,0,455 0/0:20,14:35:5.84:0,6,547 0/0:15,16:31:39.10:0,39,447 0/1:18,25:43:19.79:20,0,487 19 39589180 . G C 4.83 . 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C T 7687.83 . 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G T 1055.17 . 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G A 239.93 . 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T A 346.34 . 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C T 598.51 . 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G GT 1025.16 . 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C G 304.96 . 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A G 355.54 . AC=3;AF=0.036;AN=84;BaseQRankSum=-44.529;DP=9659;DS;Dels=0.00;FS=2465.467;HRun=2;HaplotypeScore=7.6468;InbreedingCoeff=-0.0371;MQ=59.33;MQ0=0;MQRankSum=-3.335;QD=0.48;ReadPosRankSum=-30.249 GT:AD:DP:GQ:PL 0/0:183,57:241:99:0,339,5285 0/0:194,46:240:99:0,430,5899 0/0:159,57:217:99:0,105,4548 0/0:215,35:250:99:0,388,7335 0/0:203,46:250:99:0,275,6447 0/0:201,49:250:99:0,264,6422 0/0:185,61:246:99:0,202,5886 0/0:186,64:250:99:0,281,5577 0/0:206,42:250:99:0,352,5727 0/0:161,50:211:99:0,114,4344 0/0:154,45:199:67.74:0,68,4121 0/0:164,59:225:99:0,186,4709 0/0:138,47:185:99:0,208,4044 0/0:158,47:206:99:0,249,4631 0/0:209,41:250:99:0,355,6622 0/0:155,57:212:99:0,182,4509 0/0:183,60:243:99:0,345,5149 0/0:173,50:223:99:0,226,5189 0/1:174,75:250:99:183,0,5100 0/0:210,39:250:99:0,364,6036 0/1:191,58:250:56.79:57,0,5451 0/0:190,50:242:99:0,381,5240 0/0:209,41:250:99:0,363,6841 0/0:172,70:242:99:0,147,5037 0/0:195,55:250:99:0,316,6101 0/0:189,57:246:99:0,331,5720 0/0:128,34:162:99:0,227,3853 0/0:180,41:221:99:0,298,5432 0/0:156,37:193:99:0,321,4611 0/0:180,54:236:98.33:0,98,5316 0/0:158,45:203:86.38:0,86,4248 0/0:198,52:250:99:0,372,6204 0/0:187,53:241:99:0,288,4831 0/0:169,60:230:99:0,233,5026 0/0:175,48:223:99:0,270,4743 0/0:177,46:223:99:0,266,5135 0/1:175,67:242:99:191,0,5017 0/0:175,64:239:99:0,182,4841 0/0:183,55:239:99:0,200,5283 0/0:168,70:239:26.11:0,26,4670 0/0:141,35:176:99:0,189,4093 0/0:161,52:214:99:0,158,4420 19 40199914 . C G 52437.20 . AC=50;AF=0.595;AN=84;BaseQRankSum=-11.078;DP=2928;Dels=0.00;FS=3.424;HRun=0;HaplotypeScore=1.2549;InbreedingCoeff=-0.1859;MQ=59.26;MQ0=0;MQRankSum=-1.711;QD=20.48;ReadPosRankSum=-6.732 GT:AD:DP:GQ:PL 0/1:30,31:61:99:946,0,868 0/1:31,21:52:99:629,0,976 1/1:0,44:44:99:1575,123,0 0/1:64,50:114:99:1548,0,1982 0/1:44,44:88:99:1410,0,1524 0/0:87,0:87:99:0,235,3224 0/1:43,31:74:99:1016,0,1490 0/1:38,39:77:99:1211,0,1257 1/1:0,51:51:99:1781,138,0 0/1:28,25:53:99:723,0,840 1/1:0,67:67:99:2462,193,0 0/1:34,18:52:99:525,0,1049 0/0:51,0:51:99:0,135,1742 0/1:25,21:46:99:631,0,735 0/1:108,104:212:99:2963,0,3082 0/1:40,19:59:99:546,0,1250 1/1:0,55:55:99:1962,159,0 1/1:0,44:44:99:1640,129,0 1/1:0,93:93:99:3319,265,0 1/1:0,108:108:99:3599,277,0 0/1:52,55:107:99:1544,0,1369 1/1:0,72:73:99:2457,193,0 0/1:53,53:106:99:1619,0,1734 0/1:45,30:75:99:907,0,1555 0/1:35,35:70:99:1087,0,1114 0/0:89,0:90:99:0,232,3200 0/0:37,0:37:99:0,108,1379 0/1:27,29:56:99:874,0,777 0/1:21,24:45:99:747,0,672 0/1:31,28:59:99:808,0,975 0/1:23,23:46:99:660,0,749 0/0:103,0:103:99:0,262,3398 0/1:36,30:66:99:895,0,1113 1/1:0,45:45:99:1621,126,0 1/1:1,48:49:99:1673,100,0 1/1:0,67:69:99:2344,184,0 0/1:38,34:72:99:892,0,1227 1/1:0,39:39:99:1422,114,0 0/1:28,28:56:99:871,0,853 0/1:23,33:57:99:987,0,691 1/1:3,54:57:40.90:1738,41,0 0/1:35,28:63:99:805,0,1133 19 40389657 . T G 157.91 . AC=8;AF=0.108;AN=74;BaseQRankSum=1.465;DP=1050;Dels=0.00;FS=153.376;HRun=1;HaplotypeScore=0.8500;InbreedingCoeff=-0.1478;MQ=32.66;MQ0=61;MQRankSum=2.844;QD=0.89;ReadPosRankSum=2.824 GT:AD:DP:GQ:PL 0/0:22,0:22:57.06:0,57,584 0/0:4,1:5:12.01:0,12,116 0/1:13,5:18:49.56:50,0,298 0/1:15,4:19:18.80:19,0,366 ./. 0/0:16,2:18:11.65:0,12,423 0/0:29,0:29:69.08:0,69,703 0/1:17,4:21:43.25:43,0,394 0/0:18,1:19:19.53:0,20,484 0/1:7,2:9:12.40:12,0,176 0/0:24,2:26:57.07:0,57,590 ./. ./. ./. 0/1:34,11:45:10.21:10,0,724 ./. 0/1:16,6:22:48.31:48,0,353 0/0:13,0:13:33.02:0,33,325 0/0:30,0:30:84.08:0,84,820 0/0:69,4:73:64.54:0,65,1750 0/0:88,11:99:73.78:0,74,2095 0/0:39,10:49:13.87:0,14,980 0/0:58,7:65:40.28:0,40,1537 0/0:15,3:18:8.65:0,9,387 0/1:20,4:24:31.20:31,0,537 0/0:30,5:35:47.72:0,48,837 0/0:10,1:11:2.82:0,0,253 0/0:17,2:19:11.63:0,12,408 0/0:33,2:35:62.68:0,63,894 0/0:19,3:22:26.62:0,27,510 0/0:13,5:18:12.38:0,12,315 0/0:79,0:79:99:0,225,2321 0/0:48,2:50:95.75:0,96,1274 0/0:11,5:16:2.82:0,0,269 0/0:13,3:16:5.59:0,6,307 0/0:23,1:25:29.69:0,30,629 0/0:24,5:29:35.72:0,36,720 0/0:11,0:11:27.02:0,27,276 0/1:14,5:19:55.20:55,0,355 0/0:12,0:12:36.05:0,36,349 0/0:19,0:19:54.11:0,54,584 0/0:9,0:9:24.02:0,24,242 19 40389668 . C T 134.97 . AC=1;AF=0.014;AN=74;BaseQRankSum=-4.408;DP=1022;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.6478;InbreedingCoeff=-0.0156;MQ=30.71;MQ0=129;MQRankSum=1.010;QD=5.87;ReadPosRankSum=-1.072 GT:AD:DP:GQ:PL 0/0:23,0:23:54.08:0,54,587 0/0:6,0:6:9.02:0,9,92 0/0:15,0:15:36.04:0,36,352 0/0:20,0:20:51.08:0,51,508 ./. 0/0:20,0:20:45.09:0,45,499 0/0:31,0:31:69.07:0,69,703 0/0:18,0:18:45.02:0,45,426 0/0:20,0:20:51.08:0,51,544 0/0:9,0:9:21.03:0,21,227 0/0:22,0:22:51.06:0,51,515 ./. ./. ./. 0/0:45,0:45:81.09:0,81,838 ./. 0/0:18,0:18:48.05:0,48,470 0/0:10,0:10:24.02:0,24,236 0/0:25,0:25:69.07:0,69,686 0/0:63,1:64:99:0,157,1622 0/0:99,0:100:99:0,204,2178 0/0:48,0:48:99:0,105,1087 0/0:65,0:65:99:0,162,1780 0/0:19,0:19:42.08:0,42,468 0/0:30,0:30:66.11:0,66,702 0/0:32,0:32:63.12:0,63,726 0/0:10,0:10:30.04:0,30,301 0/0:20,0:20:45.07:0,45,475 0/0:34,0:34:81.11:0,81,843 0/0:21,0:21:51.03:0,51,484 0/0:20,0:20:36.01:0,36,320 0/0:78,0:78:99:0,192,1989 0/0:39,0:40:99:0,102,1076 0/0:15,0:15:33.03:0,33,328 0/0:22,0:22:39.03:0,39,379 0/1:13,10:23:99:181,0,315 0/0:21,0:21:51.11:0,51,589 0/0:10,0:10:24.03:0,24,251 0/0:18,0:18:39.09:0,39,434 0/0:10,0:10:27.04:0,27,268 0/0:20,0:21:54.12:0,54,600 0/0:10,0:10:21.02:0,21,215 19 40389741 . A G 328.18 . AC=19;AF=0.279;AN=68;BaseQRankSum=6.498;DP=632;Dels=0.00;FS=2.229;HRun=0;HaplotypeScore=0.3162;InbreedingCoeff=-0.2203;MQ=14.47;MQ0=304;MQRankSum=0.030;QD=0.90;ReadPosRankSum=0.183 GT:AD:DP:GQ:PL 0/0:10,0:10:12.01:0,12,114 ./. 0/1:7,2:9:11.67:12,0,92 0/0:7,3:10:6:0,6,53 ./. 0/1:14,4:18:11.67:12,0,92 0/1:18,6:24:3.42:3,0,215 0/0:9,0:9:12.01:0,12,113 0/0:8,1:9:9:0,9,78 0/1:5,4:9:17.69:21,0,18 0/0:11,2:13:12:0,12,110 ./. ./. ./. 0/1:18,10:28:45.65:46,0,84 ./. 0/1:8,9:17:39.35:48,0,39 0/0:6,2:8:3:0,3,27 0/0:12,5:19:15.01:0,15,136 0/1:33,14:48:35.19:35,0,252 0/1:33,10:43:12.35:12,0,254 0/0:16,1:17:12.01:0,12,117 0/1:30,4:34:23.33:23,0,201 0/1:9,4:13:29.34:29,0,143 0/0:12,5:17:18:0,18,158 0/1:14,4:18:15.43:15,0,113 0/1:2,7:10:1.76:27,3,0 0/1:8,6:14:20.67:21,0,21 0/1:11,4:15:23.57:24,0,90 0/0:6,2:8:9:0,9,78 0/1:11,3:14:14.69:15,0,63 0/0:40,0:40:42.02:0,42,385 0/0:17,5:22:21.01:0,21,187 1/1:10,7:17:6:53,6,0 0/0:9,0:9:6:0,6,53 0/1:7,7:14:17.62:65,0,18 0/1:11,8:19:11.69:12,0,91 0/0:10,0:10:9:0,9,80 0/0:5,8:13:6:0,6,53 ./. 0/0:7,1:8:12:0,12,107 ./. 19 40486606 . T C 3668.58 . AC=2;AF=0.024;AN=84;BaseQRankSum=13.947;DP=4416;DS;Dels=0.00;FS=3.215;HRun=0;HaplotypeScore=1.9971;InbreedingCoeff=-0.0244;MQ=59.40;MQ0=1;MQRankSum=-0.206;QD=13.34;ReadPosRankSum=1.335 GT:AD:DP:GQ:PL 0/0:92,0:92:99:0,259,3039 0/0:74,0:74:99:0,190,2322 0/0:59,0:59:99:0,165,1987 0/0:195,0:195:99:0,499,6039 0/0:167,0:167:99:0,454,5468 0/0:150,0:150:99:0,421,5204 0/0:111,0:112:99:0,301,3669 0/0:136,0:136:99:0,361,4411 0/0:107,0:107:99:0,292,3453 0/0:74,0:74:99:0,205,2405 0/0:66,0:66:99:0,190,2226 0/0:72,0:72:99:0,196,2315 0/0:63,0:63:99:0,169,2049 0/0:94,0:94:99:0,262,3128 0/0:169,0:169:99:0,472,5559 0/0:80,0:80:99:0,226,2636 0/0:87,0:87:99:0,241,2880 0/0:85,0:85:99:0,226,2661 0/0:131,0:131:99:0,358,4330 0/0:125,0:125:99:0,337,4057 0/0:132,0:132:99:0,358,4282 0/0:113,0:113:99:0,298,3599 0/1:103,85:188:99:2554,0,2731 0/0:134,0:134:99:0,352,4303 0/0:156,0:156:99:0,412,5006 0/0:109,0:109:99:0,289,3484 0/0:63,0:63:99:0,184,2172 0/0:80,0:81:99:0,226,2660 0/0:58,0:58:99:0,165,1951 0/0:82,0:82:99:0,229,2714 0/0:66,0:66:99:0,187,2203 0/0:161,0:161:99:0,415,5035 0/0:91,0:91:99:0,250,2962 0/0:88,0:88:99:0,247,2947 0/0:70,0:70:99:0,199,2367 0/0:102,0:102:99:0,274,3303 0/0:132,0:132:99:0,355,4272 0/1:46,41:87:99:1115,0,1251 0/0:85,0:85:99:0,229,2720 0/0:81,0:81:99:0,232,2731 0/0:93,1:94:99:0,250,3013 0/0:105,0:105:99:0,289,3485 19 40839824 . C G 26.27 . AC=5;AF=0.061;AN=82;BaseQRankSum=-6.015;DP=256;Dels=0.00;FS=130.118;HRun=1;HaplotypeScore=0.1571;InbreedingCoeff=-0.1162;MQ=57.89;MQ0=0;MQRankSum=-0.570;QD=0.82;ReadPosRankSum=-4.348 GT:AD:DP:GQ:PL 0/0:7,2:9:1.56:4,0,206 0/0:5,2:7:15.05:0,15,185 0/0:2,2:4:6.02:0,6,77 0/0:7,0:7:21.06:0,21,272 0/1:3,2:5:21.40:21,0,94 0/0:7,3:10:19.58:0,20,219 0/0:5,0:5:12.04:0,12,167 0/0:3,0:3:9.03:0,9,125 0/0:3,1:4:9.03:0,9,111 0/0:1,2:3:3.01:0,3,36 0/0:6,1:7:15.05:0,15,194 0/1:7,2:9:14.32:14,0,183 0/0:1,1:2:3.01:0,3,39 0/1:2,2:4:22.52:23,0,69 0/0:16,3:19:48.15:0,48,597 0/0:4,0:4:12.04:0,12,155 0/0:2,1:3:6.02:0,6,68 0/0:5,0:5:15.04:0,15,183 0/1:4,2:6:18.65:19,0,112 0/0:6,4:10:12.04:0,12,156 0/0:5,0:5:15.05:0,15,183 0/0:5,2:7:15.05:0,15,193 0/0:6,2:8:15.05:0,15,207 0/0:5,2:7:15.05:0,15,207 0/0:3,1:4:9.03:0,9,111 0/0:6,0:6:18.06:0,18,238 0/0:2,0:2:6.01:0,6,63 0/0:3,3:6:9.03:0,9,111 0/0:5,0:5:15.05:0,15,190 0/0:5,0:5:15.05:0,15,185 0/0:5,0:5:15.05:0,15,190 0/0:8,6:14:21.07:0,21,265 0/0:2,1:3:6.02:0,6,78 0/1:5,3:8:40.11:40,0,172 ./. 0/0:4,1:5:12.04:0,12,157 0/0:3,3:6:8.06:0,8,82 0/0:9,2:11:24.07:0,24,294 0/0:2,1:3:6.02:0,6,78 0/0:6,1:7:18.06:0,18,228 0/0:5,3:8:15.05:0,15,184 0/0:5,0:5:15.04:0,15,178 19 40872764 . G A 3791.06 . AC=4;AF=0.048;AN=84;BaseQRankSum=3.342;DP=2960;Dels=0.00;FS=0.319;HRun=0;HaplotypeScore=2.7203;InbreedingCoeff=-0.0500;MQ=58.94;MQ0=0;MQRankSum=1.514;QD=14.09;ReadPosRankSum=0.347 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,135,1518 0/1:27,29:56:99:832,0,671 0/1:14,13:27:99:371,0,413 0/0:171,0:171:99:0,448,5536 0/0:159,0:159:99:0,409,5160 0/0:90,0:90:99:0,235,2987 0/0:65,0:65:99:0,162,2053 0/0:90,0:90:99:0,226,2881 0/0:57,0:58:99:0,138,1620 0/0:41,0:41:99:0,108,1290 0/0:46,0:46:99:0,135,1527 0/0:34,0:34:93.26:0,93,1081 0/0:55,0:55:99:0,150,1774 0/0:27,0:27:72.19:0,72,835 0/0:141,0:141:99:0,364,4416 0/0:40,0:40:99:0,108,1285 0/0:58,0:58:99:0,159,1830 0/0:36,1:37:99:0,99,1114 0/0:107,0:107:99:0,301,3508 0/0:134,0:134:99:0,340,4061 0/1:33,55:88:99:1575,0,868 0/0:84,0:84:99:0,232,2754 0/0:162,0:162:99:0,421,5259 0/0:88,0:88:99:0,238,2982 0/0:95,0:95:99:0,226,2870 0/0:94,0:94:99:0,220,2799 0/0:31,0:31:81.24:0,81,976 0/0:50,0:50:99:0,141,1667 0/0:47,0:47:99:0,123,1462 0/0:34,0:34:87.23:0,87,1014 0/0:41,0:41:99:0,108,1293 0/1:56,42:98:99:1013,0,1576 0/0:96,0:96:99:0,256,3000 0/0:44,0:44:99:0,123,1409 0/0:45,0:45:99:0,126,1481 0/0:51,0:51:99:0,132,1578 0/0:101,1:103:99:0,271,3155 0/0:54,0:54:99:0,141,1665 0/0:42,0:42:99:0,114,1312 0/0:55,0:55:99:0,150,1682 0/0:30,0:30:84.23:0,84,990 0/0:41,0:42:99:0,111,1310 19 40885569 . T G 33.08 . 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T G 49.18 . AC=3;AF=0.036;AN=84;BaseQRankSum=-9.647;DP=1974;Dels=0.00;FS=1664.953;HRun=2;HaplotypeScore=0.5080;InbreedingCoeff=-0.0622;MQ=58.91;MQ0=0;MQRankSum=0.202;QD=0.41;ReadPosRankSum=-17.005 GT:AD:DP:GQ:PL 0/0:32,10:42:5.36:0,5,1045 0/0:23,3:26:69.20:0,69,828 0/0:24,4:28:34.42:0,34,792 0/0:72,11:83:99:0,117,2409 0/0:58,15:74:73.01:0,73,2029 0/0:56,10:66:99:0,107,1967 0/0:38,6:44:76.44:0,76,1227 0/0:52,14:66:99:0,112,1736 0/0:38,6:44:83.74:0,84,1282 0/0:27,8:35:1.94:2,0,782 0/1:33,12:45:58.46:58,0,1045 0/0:41,12:53:91.76:0,92,1416 0/0:23,4:27:6.54:0,7,772 0/0:31,8:39:4.03:0,4,1009 0/0:96,34:130:90.86:0,91,2898 0/0:20,6:26:29.59:0,30,656 0/0:20,6:26:7.47:0,7,641 0/0:25,4:29:14.65:0,15,849 0/0:44,10:55:34.13:0,34,1346 0/0:39,16:55:34.56:0,35,1112 0/0:57,6:63:97.12:0,97,1839 0/0:28,6:34:51.23:0,51,891 0/0:65,17:82:77.24:0,77,2145 0/0:38,11:49:13.06:0,13,1235 0/0:43,8:51:99:0,100,1552 0/0:35,7:42:99:0,102,1229 0/0:27,6:33:15.95:0,16,842 0/0:41,5:46:89.73:0,90,1339 0/0:27,3:30:14.75:0,15,804 0/0:39,7:46:99:0,113,1333 0/0:25,7:32:20.10:0,20,858 0/0:41,13:55:59.66:0,60,1383 0/0:29,7:36:84.25:0,84,1010 0/0:32,2:34:96.29:0,96,1152 0/0:34,4:38:34.71:0,35,1094 0/1:32,10:42:16.20:16,0,1017 0/0:55,13:68:99:0,119,1722 0/1:24,10:34:47.31:47,0,761 0/0:32,6:38:64.04:0,64,1125 0/0:42,11:53:86.60:0,87,1405 0/0:22,5:27:33.07:0,33,743 0/0:35,13:48:3.39:0,3,1005 19 40957281 . C T 209.84 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.135;DP=564;Dels=0.00;FS=9.844;HRun=0;HaplotypeScore=0.3353;InbreedingCoeff=-0.0280;MQ=58.32;MQ0=0;MQRankSum=1.645;QD=11.04;ReadPosRankSum=-0.261 GT:AD:DP:GQ:PL 0/0:14,0:14:36.11:0,36,433 0/0:14,1:15:22.44:0,22,489 0/0:12,0:12:36.08:0,36,401 0/0:14,0:14:42.13:0,42,525 0/0:9,0:9:21.07:0,21,279 0/0:17,0:17:45.13:0,45,583 0/0:10,0:10:27.06:0,27,337 0/0:15,0:15:33.11:0,33,450 0/0:13,0:13:39.11:0,39,460 0/0:12,0:12:36.10:0,36,431 0/0:6,0:6:15.04:0,15,178 0/0:12,0:12:36.11:0,36,448 0/0:8,0:8:21.04:0,21,220 0/0:10,0:11:30.08:0,30,346 0/0:44,0:44:99:0,111,1346 0/0:15,0:15:33.10:0,33,411 0/0:10,0:10:21.07:0,21,278 0/0:10,0:10:30.08:0,30,334 0/0:19,0:19:54.14:0,54,636 0/0:28,0:28:69.20:0,69,859 0/1:6,3:9:72.05:72,0,194 0/1:2,8:10:50.08:200,0,50 0/0:22,0:22:60.19:0,60,765 0/0:2,0:2:6.02:0,6,78 0/0:10,0:10:27.07:0,27,324 0/0:13,0:13:36.11:0,36,457 0/0:10,0:10:27.07:0,27,313 0/0:19,0:19:48.13:0,48,579 0/0:11,0:11:33.08:0,33,388 0/0:12,0:12:30.09:0,30,369 0/0:9,0:9:24.07:0,24,299 0/0:21,0:21:48.13:0,48,594 0/0:14,0:14:30.10:0,30,400 0/0:13,0:13:36.11:0,36,435 0/0:15,0:15:36.08:0,36,413 0/0:9,0:9:27.07:0,27,316 0/0:9,0:10:27.08:0,27,321 0/0:7,0:7:21.04:0,21,227 0/0:16,0:16:45.11:0,45,519 0/0:12,0:12:33.09:0,33,374 0/0:14,0:14:39.11:0,39,463 0/0:12,0:12:33.10:0,33,414 19 40957312 . T G 202.37 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.838;DP=723;Dels=0.00;FS=4.975;HRun=0;HaplotypeScore=0.5549;InbreedingCoeff=-0.0126;MQ=57.61;MQ0=0;MQRankSum=2.549;QD=8.80;ReadPosRankSum=1.293 GT:AD:DP:GQ:PL 0/0:16,0:16:42.13:0,42,518 0/0:21,0:21:60.18:0,60,735 0/0:12,0:12:36.11:0,36,426 0/0:22,0:22:60.18:0,60,726 0/0:27,0:27:78.23:0,78,953 0/0:25,0:25:69.20:0,69,856 0/0:13,0:13:39.11:0,39,475 0/0:22,0:22:57.16:0,57,696 0/0:23,1:24:66.19:0,66,783 0/0:22,0:22:57.17:0,57,682 0/0:13,0:13:39.12:0,39,468 0/0:14,0:14:36.11:0,36,439 0/0:14,0:14:42.12:0,42,488 0/0:19,0:19:51.14:0,51,611 0/0:55,0:55:99:0,150,1749 0/0:17,0:17:51.15:0,51,602 0/0:10,0:10:30.09:0,30,364 0/0:13,0:13:36.11:0,36,452 0/0:16,0:16:42.13:0,42,526 0/1:13,10:23:99:249,0,397 0/0:15,0:15:39.10:0,39,465 0/0:14,0:14:36.09:0,36,428 0/0:25,0:25:66.18:0,66,779 0/0:7,0:7:21.07:0,21,257 0/0:15,0:15:39.12:0,39,475 0/0:17,0:17:51.15:0,51,607 0/0:5,0:5:15.05:0,15,184 0/0:14,0:14:42.13:0,42,500 0/0:10,0:10:27.07:0,27,323 0/0:12,0:13:33.10:0,33,406 0/0:10,0:10:27.08:0,27,338 0/0:28,0:28:78.21:0,78,938 0/0:21,0:21:51.16:0,51,637 0/0:14,0:14:42.12:0,42,497 0/0:13,0:13:39.12:0,39,479 0/0:19,0:19:48.15:0,48,596 0/0:9,0:9:27.08:0,27,314 0/0:13,0:13:36.11:0,36,438 0/0:13,0:13:39.11:0,39,459 0/0:20,0:20:60.18:0,60,725 0/0:15,0:15:39.11:0,39,473 0/0:15,0:15:42.13:0,42,517 19 41072129 . A G 16.23 . AC=5;AF=0.064;AN=78;BaseQRankSum=-2.699;DP=170;Dels=0.00;FS=40.617;HRun=2;HaplotypeScore=0.2077;InbreedingCoeff=-0.1515;MQ=58.59;MQ0=0;MQRankSum=0.808;QD=0.81;ReadPosRankSum=-3.073 GT:AD:DP:GQ:PL 0/0:1,1:2:3.01:0,3,39 0/0:1,0:1:3.01:0,3,31 0/1:5,1:6:9.66:10,0,119 0/0:5,0:5:15.05:0,15,183 0/0:6,0:6:18.05:0,18,204 0/0:1,0:1:3.01:0,3,30 0/0:2,1:3:6.02:0,6,74 0/0:4,0:4:12.02:0,12,130 0/1:2,1:3:23.61:24,0,29 0/0:1,1:2:3.01:0,3,32 0/0:4,2:6:9.03:0,9,113 0/1:3,2:5:22.32:22,0,99 0/0:3,1:4:9.02:0,9,103 0/0:2,1:3:6.02:0,6,75 0/0:12,3:15:36.08:0,36,393 0/1:1,1:2:23.61:24,0,28 0/0:5,0:5:12.03:0,12,135 0/0:4,1:5:9.02:0,9,98 0/0:2,0:2:6.02:0,6,74 0/0:5,0:5:12.04:0,12,142 0/0:6,1:7:18.04:0,18,198 0/0:3,0:3:6.02:0,6,69 0/0:6,1:7:18.05:0,18,207 0/0:1,0:1:3.01:0,3,38 0/0:6,0:6:18.05:0,18,219 0/0:6,1:7:18.06:0,18,217 ./. ./. 0/0:4,0:4:9.02:0,9,100 0/1:3,1:4:24.09:24,0,99 0/0:1,0:1:3.01:0,3,38 0/0:7,0:7:18.06:0,18,219 0/0:2,1:3:3.01:0,3,32 0/0:3,1:4:6.01:0,6,64 0/0:3,2:5:6.01:0,6,63 0/0:4,0:4:6.02:0,6,75 ./. 0/0:4,1:5:9.03:0,9,109 0/0:4,0:4:9.03:0,9,107 0/0:1,0:1:3.01:0,3,38 0/0:2,0:2:2.99:0,3,23 0/0:4,0:4:9.03:0,9,105 19 41082868 . T C 738.63 . 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G C 2823.13 . 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C T 1813.45 . 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A G 6190.36 . AC=42;AF=0.500;AN=84;BaseQRankSum=-8.321;DP=476;Dels=0.00;FS=1.174;HRun=1;HaplotypeScore=0.5140;InbreedingCoeff=-0.2377;MQ=58.63;MQ0=0;MQRankSum=1.829;QD=15.83;ReadPosRankSum=-1.248 GT:AD:DP:GQ:PL 1/1:0,12:12:36.07:391,36,0 0/1:4,6:10:99:149,0,118 0/0:9,0:9:15.05:0,15,199 0/1:21,12:33:99:247,0,612 0/1:8,8:16:99:243,0,252 0/1:9,9:19:99:257,0,254 0/1:7,4:11:99:104,0,207 0/1:6,10:16:99:300,0,147 1/1:0,10:10:30.05:331,30,0 0/1:1,3:4:17.60:83,0,18 1/1:0,7:7:21.03:225,21,0 0/1:2,1:3:21.57:22,0,67 0/1:1,5:6:21.27:142,0,21 0/0:13,0:13:36.10:0,36,424 0/1:21,19:40:99:468,0,565 0/1:4,1:5:20.46:20,0,98 0/1:5,4:9:99:108,0,143 0/1:2,1:3:29.55:30,0,62 0/0:16,0:16:42.13:0,42,531 0/1:14,10:24:99:225,0,366 0/0:15,0:15:45.11:0,45,538 0/1:2,1:3:24.41:24,0,65 0/1:12,13:25:99:335,0,364 0/1:1,3:4:23.21:104,0,23 0/1:8,4:12:96.52:97,0,267 0/1:8,3:11:80.31:80,0,208 0/1:4,3:7:76.42:76,0,124 0/0:5,0:5:15.05:0,15,186 1/1:0,11:11:30.06:335,30,0 0/1:5,8:13:99:195,0,147 1/1:0,9:9:24.07:276,24,0 0/0:7,0:7:21.06:0,21,254 0/0:12,0:12:30.09:0,30,369 1/1:0,7:7:18.04:188,18,0 0/1:4,2:6:45.87:46,0,117 0/1:3,4:7:88.12:112,0,88 1/1:0,9:9:27.07:304,27,0 0/1:5,1:6:11.57:12,0,168 0/1:2,8:10:51.49:192,0,51 0/1:8,6:14:99:167,0,203 0/0:8,0:8:24.07:0,24,286 1/1:0,9:9:27.07:303,27,0 19 41111069 . G A 6559.01 . AC=37;AF=0.440;AN=84;BaseQRankSum=-10.427;DP=549;Dels=0.00;FS=10.434;HRun=0;HaplotypeScore=0.4174;InbreedingCoeff=-0.3052;MQ=58.83;MQ0=0;MQRankSum=-0.231;QD=15.54;ReadPosRankSum=1.173 GT:AD:DP:GQ:PL 1/1:0,9:9:24.07:288,24,0 0/1:4,6:10:88.62:176,0,89 0/0:7,0:7:21.06:0,21,242 0/1:16,11:27:99:288,0,513 0/1:16,16:33:99:455,0,502 0/1:11,8:19:99:209,0,390 0/1:8,6:14:99:172,0,223 0/1:6,5:11:99:133,0,199 0/1:6,6:12:99:154,0,186 0/1:3,1:4:24.09:24,0,95 0/1:3,4:7:88.85:117,0,89 0/1:8,4:12:99:109,0,264 1/1:0,8:8:24.07:284,24,0 0/0:6,0:6:18.05:0,18,218 0/1:17,13:30:99:304,0,498 0/1:10,5:15:99:125,0,312 0/1:3,10:13:67.54:295,0,68 0/1:5,5:10:99:141,0,142 0/1:13,10:23:99:288,0,367 1/1:0,19:19:57.17:670,57,0 0/0:25,0:25:69.19:0,69,825 0/1:6,6:12:99:173,0,175 0/1:14,12:26:99:284,0,447 0/1:9,4:13:99:102,0,285 0/0:15,0:15:39.13:0,39,527 0/1:6,4:10:99:104,0,170 0/1:1,4:5:21.09:122,0,21 0/0:9,0:9:21.07:0,21,258 0/1:6,1:7:15.38:15,0,179 0/0:7,0:7:18.04:0,18,209 0/1:7,6:13:99:154,0,195 0/0:20,0:20:60.18:0,60,737 0/0:15,0:15:42.10:0,42,492 1/1:0,9:9:27.08:313,27,0 0/1:2,8:10:44.69:248,0,45 0/1:2,5:7:55.88:125,0,56 0/1:6,5:11:99:138,0,133 0/0:10,0:10:24.06:0,24,287 0/1:1,4:5:27.28:90,0,27 0/1:3,6:9:63.22:183,0,63 0/0:13,0:13:36.09:0,36,419 1/1:0,9:9:24.07:277,24,0 19 41117869 . A G 8037.30 . AC=37;AF=0.440;AN=84;BaseQRankSum=-3.074;DP=797;Dels=0.00;FS=6.939;HRun=0;HaplotypeScore=0.6480;InbreedingCoeff=-0.2104;MQ=59.31;MQ0=0;MQRankSum=1.489;QD=14.38;ReadPosRankSum=-1.747 GT:AD:DP:GQ:PL 1/1:0,9:9:27.07:308,27,0 0/1:3,8:11:42.18:236,0,42 0/0:18,1:19:11.70:0,12,481 0/1:22,11:33:99:237,0,625 0/1:21,12:33:99:275,0,557 0/1:9,5:14:99:148,0,265 0/1:13,8:21:99:204,0,364 0/1:16,16:32:99:440,0,376 0/1:4,6:10:82.70:170,0,83 0/1:7,6:13:99:137,0,209 0/1:4,2:6:45.01:45,0,124 0/1:4,9:13:99:241,0,100 1/1:0,12:12:30.09:369,30,0 0/0:12,0:12:30.08:0,30,360 0/1:24,20:45:99:487,0,711 0/1:4,11:15:99:309,0,103 0/1:7,8:15:99:196,0,209 0/0:10,0:10:30.09:0,30,358 0/1:19,10:29:99:255,0,527 1/1:0,32:32:87.21:975,87,0 0/0:37,0:37:99:0,99,1203 0/0:27,1:28:33.64:0,34,805 0/1:17,6:23:99:162,0,474 0/1:12,7:19:99:167,0,311 0/0:10,0:10:27.08:0,27,324 0/1:5,3:8:89.94:90,0,157 0/1:6,3:9:77.99:78,0,156 0/0:26,0:26:69.20:0,69,828 0/1:11,2:13:28.05:28,0,305 0/1:5,3:8:77.39:77,0,151 1/1:0,13:13:36.10:404,36,0 0/0:29,0:29:72.22:0,72,893 0/0:30,0:30:78.23:0,78,926 0/1:4,9:13:99:294,0,104 0/1:12,5:17:99:136,0,386 0/0:22,0:22:60.19:0,60,748 1/1:0,23:24:63.16:756,63,0 0/1:12,7:19:99:184,0,349 0/1:14,7:21:99:181,0,403 0/1:12,2:14:26.99:27,0,327 0/0:15,0:15:39.12:0,39,470 1/1:0,15:15:36.08:420,36,0 19 41119829 . C T 4186.93 . AC=12;AF=0.143;AN=84;BaseQRankSum=2.342;DP=801;Dels=0.00;FS=7.771;HRun=0;HaplotypeScore=0.6905;InbreedingCoeff=-0.1730;MQ=58.95;MQ0=0;MQRankSum=-0.820;QD=14.69;ReadPosRankSum=1.424 GT:AD:DP:GQ:PL 0/1:5,6:11:91.16:163,0,91 0/0:12,0:12:33.07:0,33,368 0/0:8,0:8:24.06:0,24,267 0/1:26,20:46:99:560,0,758 0/1:21,16:37:99:427,0,563 0/0:25,0:25:60.19:0,60,779 0/0:24,1:25:28.41:0,28,779 0/0:25,0:25:66.18:0,66,824 0/0:12,0:12:33.10:0,33,389 0/0:11,0:11:33.09:0,33,371 0/1:6,5:11:99:111,0,160 0/0:7,0:7:21.06:0,21,241 0/1:6,8:14:99:225,0,180 0/0:22,1:23:57.16:0,57,666 0/1:22,28:50:99:759,0,517 0/1:3,4:7:86.21:122,0,86 0/0:9,0:9:24.07:0,24,271 0/0:10,1:11:2.49:0,2,291 0/0:25,0:25:54.15:0,54,649 0/1:12,14:26:99:393,0,323 0/0:24,0:24:66.17:0,66,745 0/0:21,0:21:57.17:0,57,697 0/0:44,0:44:99:0,123,1520 0/1:10,15:25:99:447,0,205 0/0:22,0:22:57.18:0,57,723 0/1:8,10:18:99:288,0,217 0/0:13,0:13:36.10:0,36,430 0/0:14,0:14:39.11:0,39,441 0/0:13,0:13:36.10:0,36,418 0/0:14,0:14:36.10:0,36,402 0/0:17,0:17:45.10:0,45,498 0/0:30,0:30:75.23:0,75,920 0/0:18,0:18:48.14:0,48,571 0/0:10,0:10:27.08:0,27,318 0/0:19,0:19:51.14:0,51,590 0/0:17,0:17:51.12:0,51,565 0/1:12,16:28:99:467,0,267 0/0:10,0:10:27.08:0,27,323 0/1:4,8:12:94.03:226,0,94 0/0:16,0:16:42.11:0,42,484 0/0:9,0:9:27.08:0,27,323 0/0:12,0:12:36.08:0,36,393 19 41128306 . G A 5.81 . AC=1;AF=0.013;AN=80;BaseQRankSum=-0.595;DP=166;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1801;InbreedingCoeff=-0.0694;MQ=57.50;MQ0=0;MQRankSum=0.701;QD=0.73;ReadPosRankSum=2.088 GT:AD:DP:GQ:PL 0/0:3,0:3:9.02:0,9,104 ./. 0/0:1,0:1:3.01:0,3,40 0/0:5,0:5:15.05:0,15,191 0/0:3,0:3:9.03:0,9,118 0/0:3,0:3:9.02:0,9,102 0/0:4,0:4:9.03:0,9,119 0/0:2,0:2:6.01:0,6,66 0/0:4,0:4:12.02:0,12,134 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.02:0,6,76 0/0:4,0:4:9.03:0,9,113 0/0:5,0:5:15.04:0,15,180 0/0:4,0:4:12.03:0,12,147 0/0:8,0:8:24.07:0,24,298 0/0:5,0:5:15.05:0,15,194 0/0:6,0:6:18.06:0,18,227 0/0:3,0:3:9.03:0,9,110 0/0:6,0:6:18.03:0,18,204 0/0:10,0:10:24.06:0,24,288 0/0:4,0:4:12.04:0,12,140 0/0:4,0:4:9.03:0,9,104 0/1:6,2:8:49.88:50,0,219 0/0:2,0:2:6.02:0,6,79 ./. 0/0:4,0:4:12.03:0,12,139 0/0:2,0:2:6.02:0,6,70 0/0:6,0:6:18.05:0,18,208 0/0:3,0:3:9.02:0,9,102 0/0:6,0:6:15.04:0,15,186 0/0:5,0:5:15.04:0,15,179 0/0:6,0:6:12.04:0,12,154 0/0:7,0:7:21.07:0,21,273 0/0:5,0:5:12.04:0,12,150 0/0:4,0:4:12.03:0,12,139 0/0:3,0:3:9.02:0,9,105 0/0:5,0:6:12.01:0,12,132 0/0:4,0:4:9.03:0,9,114 0/0:2,0:2:6.02:0,6,73 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.02:0,6,76 0/0:2,0:2:6.02:0,6,73 19 41128309 . C T 2297.97 . AC=38;AF=0.452;AN=84;BaseQRankSum=-1.551;DP=175;Dels=0.00;FS=1.335;HRun=0;HaplotypeScore=0.1778;InbreedingCoeff=-0.0920;MQ=57.63;MQ0=0;MQRankSum=-0.501;QD=18.09;ReadPosRankSum=-1.021 GT:AD:DP:GQ:PL 1/1:0,3:3:9.03:107,9,0 0/1:1,1:2:28.34:29,0,28 0/0:1,0:1:3.01:0,3,38 0/1:1,4:5:22.32:92,0,22 0/1:3,1:4:21.40:21,0,107 0/1:2,1:3:26.23:26,0,66 0/1:2,3:5:63.32:63,0,70 1/1:0,2:2:6.02:69,6,0 0/1:1,3:4:25.76:91,0,26 0/0:1,0:1:3.01:0,3,31 0/0:2,0:2:6.02:0,6,75 0/1:3,2:5:56.35:56,0,82 1/1:1,4:5:12.04:141,12,0 0/0:5,0:5:15.04:0,15,167 0/1:3,6:9:79.40:185,0,79 0/1:3,2:5:58.88:59,0,87 0/1:1,5:6:18.93:157,0,19 0/0:3,0:3:9.03:0,9,103 0/0:5,1:6:12.03:0,12,139 1/1:0,10:10:24.05:280,24,0 0/0:4,0:4:12.03:0,12,141 0/0:4,0:4:12.03:0,12,134 0/1:5,3:8:83.39:83,0,176 0/1:1,1:2:29.23:29,0,35 0/0:1,0:1:3.01:0,3,33 1/1:0,4:4:9.03:102,9,0 0/1:1,1:2:24.58:25,0,27 0/0:6,0:6:18.05:0,18,209 0/1:1,2:3:24.41:61,0,24 0/1:2,4:6:29.70:126,0,30 1/1:0,5:5:15.04:167,15,0 0/0:6,0:6:15.04:0,15,176 0/0:7,0:7:21.06:0,21,255 0/1:3,3:6:74.54:75,0,87 0/1:1,3:4:21.40:96,0,21 0/0:2,0:2:6.02:0,6,72 1/1:0,7:7:15.04:169,15,0 0/1:3,1:4:29.23:29,0,39 0/1:2,1:3:26.48:27,0,26 1/1:0,1:1:3.01:35,3,0 0/1:1,1:2:27.42:27,0,28 1/1:0,2:2:6.02:71,6,0 19 41128415 . G A 773.28 . AC=4;AF=0.048;AN=84;BaseQRankSum=-6.576;DP=710;Dels=0.00;FS=2.851;HRun=0;HaplotypeScore=0.7102;InbreedingCoeff=-0.0526;MQ=58.22;MQ0=0;MQRankSum=2.063;QD=9.43;ReadPosRankSum=0.261 GT:AD:DP:GQ:PL 0/0:13,0:13:39.12:0,39,492 0/0:18,0:18:39.13:0,39,514 0/0:9,0:9:24.08:0,24,303 0/0:46,0:46:99:0,126,1655 0/0:34,0:34:96.31:0,96,1301 0/0:15,0:15:39.12:0,39,518 0/0:22,0:22:57.19:0,57,777 0/0:19,0:19:51.15:0,51,666 0/0:13,0:13:30.09:0,30,388 0/0:5,0:5:15.05:0,15,192 0/0:13,0:13:36.11:0,36,450 0/0:17,0:17:48.15:0,48,598 0/0:15,0:15:30.09:0,30,372 0/0:15,0:15:42.13:0,42,523 0/0:33,0:33:93.24:0,93,1136 0/0:16,0:16:45.15:0,45,582 0/0:16,0:16:48.15:0,48,595 0/1:6,7:13:99:204,0,190 0/1:16,9:25:99:225,0,430 0/0:22,0:22:66.20:0,66,824 0/0:17,0:17:48.14:0,48,585 0/0:11,0:11:27.09:0,27,350 0/0:47,0:47:99:0,120,1618 0/0:20,0:20:45.15:0,45,608 0/0:17,0:17:45.14:0,45,604 0/0:13,0:13:33.11:0,33,465 0/0:3,0:3:9.03:0,9,116 0/0:11,0:11:24.05:0,24,289 0/0:9,0:9:24.07:0,24,296 0/0:7,0:7:18.06:0,18,231 0/0:12,0:12:33.10:0,33,408 0/1:13,10:23:99:210,0,381 0/1:11,10:21:99:221,0,353 0/0:13,0:13:39.12:0,39,489 0/0:10,0:10:27.09:0,27,349 0/0:13,0:13:36.11:0,36,452 0/0:23,0:23:63.15:0,63,762 0/0:10,0:10:18.06:0,18,231 0/0:11,0:11:33.09:0,33,413 0/0:16,0:16:45.14:0,45,567 0/0:8,0:8:24.07:0,24,286 0/0:16,0:16:45.14:0,45,564 19 41128537 . G C 36.06 . AC=8;AF=0.095;AN=84;BaseQRankSum=-6.883;DP=441;Dels=0.00;FS=40.946;HRun=1;HaplotypeScore=1.1110;InbreedingCoeff=-0.1403;MQ=56.86;MQ0=0;MQRankSum=0.766;QD=0.40;ReadPosRankSum=-2.620 GT:AD:DP:GQ:PL 0/0:4,4:8:12.04:0,12,145 0/0:5,1:6:15.05:0,15,183 0/0:7,1:8:15.04:0,15,173 0/1:17,8:25:25.76:26,0,511 0/0:12,3:15:27.08:0,27,340 0/1:5,5:10:21.40:21,0,98 0/0:9,2:11:27.06:0,27,326 0/1:4,3:7:12.62:13,0,149 0/1:5,3:8:18.59:19,0,79 0/0:4,1:5:12.04:0,12,154 0/0:5,2:7:15.03:0,15,163 0/0:9,2:11:15.05:0,15,186 0/0:7,2:9:12.04:0,12,146 0/0:11,1:12:27.08:0,27,320 0/0:18,7:25:6:0,6,444 0/0:5,2:7:12.03:0,12,134 0/1:5,2:7:8.63:9,0,168 0/0:8,2:10:18.05:0,18,216 0/0:6,1:7:9.03:0,9,113 0/0:15,1:16:24.07:0,24,279 0/0:9,1:10:27.06:0,27,314 0/0:11,4:15:24.07:0,24,297 0/0:9,4:13:18.06:0,18,235 0/0:3,0:3:9.03:0,9,115 0/0:9,5:14:0.71:7,0,238 0/0:7,1:8:9.02:0,9,102 0/0:3,1:4:9.03:0,9,114 0/0:3,1:4:9.03:0,9,113 0/1:9,2:11:7.50:7,0,206 0/0:10,3:13:5.38:0,5,258 0/0:9,1:10:15.02:0,15,154 0/0:20,2:22:12.58:0,13,548 0/0:16,4:20:23.42:0,23,467 0/0:6,2:8:12.04:0,12,147 0/0:7,3:10:15.02:0,15,158 0/1:5,3:8:14.58:15,0,127 0/1:9,6:15:35.24:35,0,127 0/0:10,0:10:21.05:0,21,235 0/0:8,2:10:12.04:0,12,149 0/0:6,0:6:18.02:0,18,195 0/0:4,1:5:9.03:0,9,107 0/0:5,3:8:9.03:0,9,105 19 41129842 . C T 9303.76 . 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A G 3771.19 . AC=4;AF=0.048;AN=84;BaseQRankSum=11.732;DP=4480;DS;Dels=0.00;FS=11.298;HRun=1;HaplotypeScore=1.9466;InbreedingCoeff=-0.0500;MQ=58.62;MQ0=0;MQRankSum=-0.160;QD=13.23;ReadPosRankSum=-0.503 GT:AD:DP:GQ:PL 0/0:84,0:84:99:0,244,2859 0/0:82,0:82:99:0,232,2689 0/0:60,1:62:99:0,159,1861 0/0:213,0:213:99:0,584,6808 0/0:187,1:188:99:0,520,6113 0/0:129,1:130:99:0,355,4328 0/0:139,0:139:99:0,379,4555 0/0:152,0:153:99:0,391,4663 0/0:97,0:97:99:0,259,3067 0/0:73,0:73:99:0,205,2316 0/0:78,0:78:99:0,226,2664 0/0:83,0:84:99:0,223,2591 0/0:58,0:58:99:0,153,1802 0/0:73,1:74:99:0,205,2425 0/0:246,3:250:99:0,640,7740 0/0:79,1:80:99:0,235,2741 0/0:77,0:77:99:0,220,2558 0/0:78,0:78:99:0,220,2558 0/0:137,0:138:99:0,367,4371 0/0:152,2:155:99:0,385,4846 0/0:158,0:158:99:0,442,5231 0/0:105,0:105:99:0,295,3418 0/0:214,1:215:99:0,602,7144 0/0:121,0:121:99:0,337,3982 0/0:146,1:147:99:0,403,4781 0/0:121,0:121:99:0,316,3761 0/1:28,23:51:99:670,0,819 0/1:42,38:80:99:1136,0,1022 0/0:71,0:71:99:0,202,2351 0/0:74,0:74:99:0,211,2473 0/0:78,0:78:99:0,220,2611 0/0:121,1:122:99:0,340,4058 0/0:110,1:111:99:0,301,3505 0/1:44,39:83:99:1041,0,1274 0/1:35,36:71:99:925,0,955 0/0:85,0:85:99:0,238,2770 0/0:121,1:122:99:0,343,4037 0/0:67,1:68:99:0,184,2166 0/0:78,0:78:99:0,217,2504 0/0:71,1:72:99:0,196,2330 0/0:73,1:75:99:0,202,2364 0/0:78,0:78:99:0,223,2636 19 41209477 . C T 13273.69 . AC=29;AF=0.345;AN=84;BaseQRankSum=5.028;DP=1299;Dels=0.00;FS=18.392;HRun=0;HaplotypeScore=0.9514;InbreedingCoeff=-0.1060;MQ=58.98;MQ0=0;MQRankSum=1.417;QD=16.59;ReadPosRankSum=-1.916 GT:AD:DP:GQ:PL 0/1:13,13:26:99:369,0,412 1/1:0,14:14:39.12:493,39,0 1/1:0,26:26:78.25:977,78,0 0/1:37,37:74:99:1043,0,991 0/1:32,20:52:99:582,0,958 0/1:24,21:45:99:590,0,696 0/1:13,9:22:99:222,0,374 0/0:28,0:28:63.20:0,63,827 0/1:11,8:19:99:195,0,294 0/1:11,10:21:99:302,0,299 0/1:9,12:21:99:348,0,227 0/0:24,0:24:63.19:0,63,785 0/0:17,0:17:45.12:0,45,512 0/1:8,12:20:99:364,0,220 0/0:96,0:97:99:0,247,2941 0/0:26,0:26:78.23:0,78,938 0/0:33,1:34:45.68:0,46,958 1/1:0,26:26:75.24:942,75,0 0/1:17,24:41:99:679,0,469 0/1:29,19:48:99:460,0,830 0/1:17,14:31:99:361,0,500 0/1:14,17:31:99:512,0,396 0/1:37,26:63:99:688,0,1134 0/0:26,0:26:75.22:0,75,914 0/1:15,24:39:99:684,0,430 0/0:24,0:24:66.20:0,66,813 0/0:23,0:23:69.20:0,69,826 0/0:17,0:17:42.12:0,42,483 0/0:23,0:23:69.21:0,69,839 0/1:7,18:25:99:520,0,188 0/0:14,0:14:39.11:0,39,482 1/1:0,45:45:99:1438,111,0 0/1:10,9:19:99:276,0,255 0/1:11,9:20:99:265,0,325 0/1:13,10:23:99:292,0,377 0/1:14,11:25:99:321,0,381 0/0:35,0:35:93.26:0,93,1100 0/0:27,0:28:75.19:0,75,885 0/0:30,0:30:84.25:0,84,1026 0/0:25,0:25:69.18:0,69,797 0/1:12,12:24:99:351,0,331 0/0:28,0:28:78.22:0,78,911 19 41220029 . G A 1753.24 . AC=3;AF=0.036;AN=84;BaseQRankSum=-0.804;DP=2354;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.2957;InbreedingCoeff=-0.0370;MQ=59.09;MQ0=0;MQRankSum=1.450;QD=15.79;ReadPosRankSum=-1.241 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,111,1317 0/0:37,0:37:99:0,105,1257 0/0:46,0:46:99:0,123,1451 0/0:120,0:120:99:0,328,4290 0/0:118,0:118:99:0,340,4434 0/0:90,0:90:99:0,247,3178 0/0:73,0:73:99:0,208,2676 0/0:76,0:76:99:0,223,2825 0/0:43,0:43:99:0,123,1472 0/0:39,0:39:99:0,105,1279 0/0:42,0:42:99:0,111,1324 0/0:43,0:43:99:0,123,1426 0/0:30,0:30:84.23:0,84,1024 0/0:50,0:50:99:0,144,1697 0/0:151,0:152:99:0,406,4820 0/0:20,0:20:60.18:0,60,719 0/1:18,23:41:99:695,0,523 0/0:38,0:38:99:0,102,1220 0/0:75,0:75:99:0,199,2356 0/0:69,0:69:99:0,175,2132 0/0:63,0:63:99:0,177,2101 0/0:42,0:42:99:0,111,1335 0/0:132,2:134:99:0,339,4867 0/0:65,0:65:99:0,181,2340 0/0:96,0:96:99:0,259,3339 0/0:65,0:65:99:0,178,2298 0/1:16,15:31:99:442,0,397 0/0:46,0:48:99:0,132,1561 0/1:15,24:39:99:691,0,439 0/0:41,0:41:99:0,114,1380 0/0:28,0:29:78.20:0,78,915 0/0:71,0:71:99:0,193,2334 0/0:43,0:43:99:0,126,1491 0/0:36,0:36:99:0,99,1196 0/0:29,0:29:84.24:0,84,1003 0/0:39,0:39:99:0,111,1302 0/0:66,0:66:99:0,184,2198 0/0:35,0:35:99:0,102,1231 0/0:38,0:38:99:0,111,1313 0/0:39,0:40:99:0,105,1245 0/0:22,0:22:60.17:0,60,696 0/0:39,0:39:99:0,105,1244 19 41349786 . G T 697.26 . AC=3;AF=0.036;AN=84;BaseQRankSum=-8.064;DP=5826;DS;Dels=0.00;FS=18.681;HRun=1;HaplotypeScore=1.8991;InbreedingCoeff=-0.0370;MQ=26.04;MQ0=1604;MQRankSum=-2.128;QD=1.56;ReadPosRankSum=0.662 GT:AD:DP:GQ:PL 0/0:144,0:144:99:0,258,2705 0/0:154,0:154:99:0,279,2932 0/0:101,0:101:99:0,189,1986 0/0:216,0:216:99:0,409,4351 0/0:208,0:208:99:0,415,4504 0/1:106,40:146:99:348,0,1645 0/1:134,31:165:99:213,0,2463 0/0:150,0:151:99:0,279,2985 0/0:135,0:135:99:0,249,2580 0/0:99,1:100:99:0,132,1589 0/0:90,0:90:99:0,177,1797 0/0:136,0:136:99:0,246,2582 0/1:110,25:135:99:212,0,1968 0/0:127,0:127:99:0,225,2342 0/0:250,0:250:99:0,403,4244 0/0:129,0:129:99:0,264,2787 0/0:110,0:110:99:0,183,1818 0/0:90,0:90:99:0,183,1958 0/0:157,1:158:99:0,261,2778 0/0:195,0:195:99:0,352,3772 0/0:140,2:142:99:0,225,2417 0/0:91,0:91:99:0,165,1771 0/0:205,1:206:99:0,360,4065 0/0:147,0:147:99:0,258,2639 0/0:144,0:144:99:0,237,2592 0/0:156,1:157:99:0,240,2923 0/0:69,0:69:99:0,114,1187 0/0:133,0:133:99:0,243,2522 0/0:121,0:121:99:0,228,2423 0/0:133,0:133:99:0,213,2120 0/0:102,0:102:99:0,189,1878 0/0:146,0:146:99:0,216,2368 0/0:114,0:114:99:0,195,1981 0/0:116,1:117:99:0,219,2226 0/0:111,0:111:99:0,228,2326 0/0:142,0:142:99:0,270,2677 0/0:203,1:204:99:0,333,3411 0/0:132,0:132:99:0,264,2683 0/0:155,0:155:99:0,264,2670 0/0:118,0:118:99:0,216,2268 0/0:87,0:87:99:0,165,1741 0/0:114,0:114:99:0,222,2318 19 41349874 . T A 196.72 . AC=4;AF=0.048;AN=84;BaseQRankSum=-7.127;DP=3521;DS;Dels=0.00;FS=22.836;HRun=0;HaplotypeScore=0.5632;InbreedingCoeff=-0.0535;MQ=14.11;MQ0=1990;MQRankSum=-3.877;QD=0.49;ReadPosRankSum=0.525 GT:AD:DP:GQ:PL 0/0:66,0:66:48.04:0,48,454 0/0:61,19:80:24.37:0,24,433 0/0:50,12:62:18.38:0,18,408 0/0:154,0:154:99:0,129,1177 0/0:122,0:122:99:0,114,1037 0/0:126,0:126:75.09:0,75,747 0/0:95,0:95:78.06:0,78,725 0/0:107,0:107:75.06:0,75,715 0/0:78,0:78:66.08:0,66,643 0/0:63,0:63:45.03:0,45,425 0/0:51,0:52:39.05:0,39,389 0/0:62,0:63:39.05:0,39,386 0/0:66,0:66:75.11:0,75,754 0/0:72,0:72:42.03:0,42,406 0/0:188,0:190:99:0,117,1088 0/0:79,0:79:87.09:0,87,841 0/0:58,0:59:36.03:0,36,346 0/0:53,0:53:24.02:0,24,228 0/0:99,0:101:63.08:0,63,622 0/0:113,0:113:66.06:0,66,628 0/0:88,0:88:51.07:0,51,509 0/0:71,0:72:48.06:0,48,487 0/1:120,40:161:94.36:94,0,735 0/0:74,0:74:63.01:0,63,570 0/0:78,0:78:39.03:0,39,364 0/0:84,0:85:57:0,57,519 0/0:44,0:44:9.01:0,9,87 0/1:77,20:98:74.01:74,0,544 0/0:51,0:51:45.06:0,45,448 0/0:63,13:76:8.69:0,9,470 0/1:45,22:67:52.64:53,0,367 0/0:105,0:106:57.07:0,57,566 0/0:70,0:70:75.07:0,75,732 0/0:71,0:71:57.05:0,57,551 0/0:48,0:48:45.03:0,45,418 0/0:84,0:84:45.05:0,45,441 0/0:95,30:125:18.70:0,19,561 0/1:51,22:73:62.38:62,0,396 0/0:70,0:70:54.05:0,54,527 0/0:66,0:66:60.07:0,60,591 0/0:44,0:44:30.03:0,30,284 0/0:69,0:69:60.05:0,60,579 19 41354533 . A T 1078.03 . AC=2;AF=0.024;AN=84;BaseQRankSum=-4.251;DP=2080;Dels=0.00;FS=0.583;HRun=0;HaplotypeScore=1.6599;InbreedingCoeff=-0.0244;MQ=57.81;MQ0=10;MQRankSum=0.747;QD=13.65;ReadPosRankSum=-1.920 GT:AD:DP:GQ:PL 0/0:33,0:34:78.24:0,78,977 0/0:35,0:35:93.28:0,93,1136 0/0:25,0:25:66.17:0,66,794 0/0:130,0:131:99:0,334,4105 0/0:98,0:99:99:0,259,3223 0/0:92,0:92:99:0,229,2909 0/0:62,0:62:99:0,144,1770 0/0:68,0:68:99:0,166,2074 0/0:33,0:33:90.27:0,90,1094 0/0:26,0:27:66.20:0,66,823 0/0:30,0:30:78.23:0,78,939 0/0:37,0:37:99:0,99,1178 0/0:25,0:25:69.19:0,69,819 0/0:25,0:25:60.18:0,60,739 0/0:131,0:131:99:0,328,4040 0/0:39,0:39:99:0,99,1210 0/0:24,0:24:66.17:0,66,789 0/0:33,0:33:93.29:0,93,1150 0/0:51,0:51:99:0,132,1600 0/1:29,35:64:99:864,0,773 0/0:57,0:57:99:0,144,1764 0/0:28,0:28:78.24:0,78,959 0/0:152,0:153:99:0,355,4483 0/0:52,0:52:99:0,135,1681 0/0:89,1:91:99:0,232,2928 0/0:66,0:66:99:0,162,2047 0/0:23,0:23:63.20:0,63,782 0/0:35,0:35:96.28:0,96,1166 0/0:27,0:27:69.19:0,69,816 0/0:40,0:41:99:0,105,1280 0/0:38,0:38:99:0,99,1234 0/0:75,0:75:99:0,202,2422 0/0:57,0:57:99:0,150,1845 0/0:22,0:22:60.18:0,60,739 0/0:23,0:23:66.16:0,66,761 0/0:31,0:32:78.24:0,78,979 0/0:68,0:69:99:0,141,1776 0/1:6,9:15:99:276,0,167 0/0:36,0:36:96.28:0,96,1172 0/0:23,0:23:63.18:0,63,761 0/0:23,0:23:63.17:0,63,754 0/0:29,0:29:78.22:0,78,925 19 41354606 . G T 2927.78 . AC=24;AF=0.286;AN=84;BaseQRankSum=-1.749;DP=1878;Dels=0.00;FS=8.735;HRun=0;HaplotypeScore=1.3901;InbreedingCoeff=-0.3926;MQ=55.42;MQ0=39;MQRankSum=-17.732;QD=2.50;ReadPosRankSum=7.984 GT:AD:DP:GQ:PL 0/0:31,4:35:29.14:0,29,933 0/0:31,1:32:45.09:0,45,909 0/0:24,0:24:54.16:0,54,678 0/1:70,19:89:99:167,0,2294 0/1:72,22:94:99:399,0,2470 0/1:51,16:67:99:205,0,1743 0/1:37,7:44:72.43:72,0,1142 0/1:50,7:57:74.78:75,0,1630 0/0:39,1:40:99:0,105,1294 0/1:19,6:25:77.35:77,0,562 0/1:33,7:40:60.59:61,0,1021 0/0:29,4:33:12.08:0,12,855 0/1:27,5:32:77.82:78,0,686 0/0:25,0:25:63.19:0,63,790 0/1:114,21:136:99:169,0,3309 0/0:37,0:37:99:0,105,1266 0/1:21,6:27:40.89:41,0,660 0/0:19,0:19:54.15:0,54,633 0/0:44,0:44:99:0,108,1283 0/0:66,0:66:99:0,180,2134 0/0:70,0:70:99:0,181,2210 0/0:34,0:34:90.24:0,90,1053 0/1:69,8:77:0.94:1,0,2361 0/1:39,11:50:99:209,0,1216 0/0:50,5:55:11.30:0,11,1765 0/1:44,18:62:99:306,0,1511 0/1:24,5:29:79.57:80,0,683 0/0:37,3:40:36.83:0,37,1109 0/1:16,4:20:28.84:29,0,499 0/1:26,6:32:71.44:71,0,819 0/0:35,0:36:93.27:0,93,1126 0/0:60,0:60:99:0,138,1743 0/1:36,15:52:99:228,0,1087 0/1:12,10:22:99:138,0,349 0/1:26,7:33:78.57:79,0,779 0/1:24,7:31:70.63:71,0,675 0/1:49,10:59:90.45:90,0,1426 0/0:24,3:27:29.74:0,30,689 0/1:23,12:35:99:192,0,718 0/1:28,5:33:53.65:54,0,788 0/0:28,2:30:36.09:0,36,842 0/1:14,11:25:99:214,0,445 19 41354661 . T C 167.12 . AC=9;AF=0.107;AN=84;BaseQRankSum=11.559;DP=1025;Dels=0.00;FS=2.326;HRun=0;HaplotypeScore=0.5980;InbreedingCoeff=-0.1642;MQ=56.64;MQ0=22;MQRankSum=-11.085;QD=0.77;ReadPosRankSum=-2.144 GT:AD:DP:GQ:PL 0/0:20,3:23:26.47:0,26,556 0/0:19,2:21:18.59:0,19,581 0/0:15,0:15:36.11:0,36,424 0/0:37,7:44:1.82:3,0,1087 0/1:39,5:44:35.12:35,0,1078 0/0:33,4:37:1:6,0,1046 0/0:24,1:25:69.19:0,69,791 0/1:18,5:23:54.87:55,0,533 0/0:13,2:15:33.09:0,33,377 0/0:12,3:16:2.67:0,3,364 0/1:21,2:23:6.56:7,0,633 0/0:8,0:8:24.07:0,24,280 0/0:17,1:18:51.15:0,51,591 0/0:16,0:16:45.12:0,45,517 0/0:68,8:76:52.45:0,52,2044 0/0:21,0:21:63.17:0,63,715 0/1:18,2:20:8.32:8,0,514 0/0:13,0:13:33.09:0,33,382 0/0:39,0:39:99:0,111,1314 0/0:41,0:41:99:0,117,1342 0/0:35,0:36:99:0,99,1147 0/0:23,0:23:60.17:0,60,686 0/0:40,2:42:83.85:0,84,1245 0/1:21,2:23:15.49:15,0,575 0/0:31,2:33:0.68:0,1,823 0/1:19,4:23:36.70:37,0,579 0/1:14,3:17:43.39:43,0,433 0/0:19,4:23:8.83:0,9,593 0/0:13,2:15:36.10:0,36,410 0/0:19,2:21:51.15:0,51,597 0/0:22,0:22:63.14:0,63,700 0/0:24,0:25:63.16:0,63,729 0/1:22,5:27:26.73:27,0,633 0/1:12,5:17:54.73:55,0,366 0/0:15,1:16:15.50:0,16,460 0/0:14,4:18:11.70:0,12,458 0/0:20,3:23:25.37:0,25,647 0/0:15,3:18:11.69:0,12,451 0/0:17,3:20:48.14:0,48,551 0/0:14,1:15:14.45:0,14,434 0/0:13,0:13:36.08:0,36,390 0/0:13,4:17:2.25:2,0,356 19 41381647 . A C 22196.13 . AC=57;AF=0.679;AN=84;BaseQRankSum=16.866;DP=2441;Dels=0.00;FS=1872.141;HRun=2;HaplotypeScore=1.8417;InbreedingCoeff=-0.0294;MQ=33.87;MQ0=62;MQRankSum=8.601;QD=11.23;ReadPosRankSum=1.157 GT:AD:DP:GQ:PL 0/1:59,6:66:32.34:32,0,1408 1/1:0,18:18:45.10:479,45,0 0/1:45,15:61:99:335,0,1040 1/1:1,57:58:99:1720,156,0 1/1:1,51:52:99:1520,117,0 0/1:57,11:68:99:156,0,1356 1/1:1,30:31:48.10:857,48,0 0/1:35,10:45:99:174,0,816 0/1:62,9:71:99:101,0,1467 0/1:50,12:62:99:128,0,1179 0/1:41,20:62:99:406,0,969 1/1:0,18:18:51.14:564,51,0 1/1:0,13:13:36.08:390,36,0 0/1:42,8:50:99:115,0,984 0/1:163,57:220:99:1069,0,3739 0/1:48,7:56:86.84:87,0,1072 1/1:0,20:20:57.15:629,57,0 0/0:82,2:85:99:0,162,2197 0/1:81,24:106:99:412,0,1817 0/1:66,30:96:99:595,0,1467 0/0:148,2:150:99:0,349,3741 0/0:90,0:90:99:0,234,2422 1/1:1,61:62:99:1830,144,0 1/1:1,28:29:47.51:757,48,0 0/1:76,23:99:99:468,0,1778 1/1:1,23:24:38.50:662,38,0 0/1:1,11:12:6.23:294,0,6 1/1:0,21:21:45.11:488,45,0 1/1:0,7:7:18.05:197,18,0 1/1:0,16:16:45.12:492,45,0 0/1:51,20:71:99:409,0,1176 0/0:137,1:139:99:0,348,3588 1/1:0,28:28:75.18:812,75,0 1/1:0,29:29:72.20:796,72,0 0/1:51,14:65:99:291,0,1129 0/1:46,15:62:99:308,0,1140 1/1:0,53:53:99:1545,144,0 1/1:2,26:28:50.47:750,50,0 1/1:0,33:33:90.20:973,90,0 0/1:55,9:64:16.90:17,0,1380 0/1:46,22:69:99:419,0,1015 1/1:1,31:32:84.22:919,84,0 19 41381683 . G T 495.48 . AC=3;AF=0.036;AN=84;BaseQRankSum=-5.113;DP=3322;DS;Dels=0.00;FS=0.890;HRun=1;HaplotypeScore=1.1231;InbreedingCoeff=-0.0371;MQ=25.30;MQ0=1296;MQRankSum=0.471;QD=2.68;ReadPosRankSum=0.663 GT:AD:DP:GQ:PL 0/0:66,0:66:99:0,102,1174 0/0:47,0:47:51.13:0,51,564 0/0:68,0:68:99:0,132,1462 0/0:89,0:89:99:0,144,1632 0/0:87,0:87:99:0,120,1349 0/1:64,22:86:99:209,0,988 0/1:34,18:52:99:333,0,298 0/0:67,1:68:72.60:0,73,1076 0/0:78,0:78:99:0,114,1223 0/0:76,0:76:99:0,111,1265 0/0:63,0:63:99:0,108,1166 0/0:52,0:52:48.14:0,48,560 0/1:39,8:47:28.64:29,0,337 0/0:73,0:73:99:0,114,1171 0/0:243,0:243:99:0,436,4751 0/0:78,0:78:99:0,120,1301 0/0:54,0:54:93.23:0,93,1037 0/0:81,0:81:99:0,156,1731 0/0:115,0:116:99:0,189,2119 0/0:121,0:121:99:0,223,2460 0/0:153,0:153:99:0,252,2669 0/0:93,0:93:99:0,159,1771 0/0:114,0:114:99:0,153,1701 0/0:63,0:64:75.20:0,75,847 0/0:110,1:111:99:0,219,2407 0/0:58,0:58:66.18:0,66,748 0/0:35,0:35:36.10:0,36,419 0/0:60,0:60:81.17:0,81,885 0/0:21,0:21:24.06:0,24,267 0/0:36,0:36:51.13:0,51,579 0/0:95,0:96:99:0,189,1995 0/0:133,0:133:99:0,232,2701 0/0:57,0:57:78.20:0,78,870 0/0:49,0:49:72.18:0,72,806 0/0:70,0:70:99:0,117,1277 0/0:76,0:76:99:0,138,1508 0/0:93,0:94:99:0,168,1917 0/0:64,0:64:99:0,99,1114 0/0:73,0:73:99:0,114,1271 0/0:98,0:98:99:0,135,1524 0/0:68,0:68:99:0,114,1291 0/0:54,0:54:72.16:0,72,779 19 41381771 . T A 732.11 . AC=7;AF=0.083;AN=84;BaseQRankSum=-6.411;DP=2536;DS;Dels=0.00;FS=24.754;HRun=0;HaplotypeScore=0.3065;InbreedingCoeff=-0.0939;MQ=14.53;MQ0=1691;MQRankSum=1.111;QD=1.78;ReadPosRankSum=0.395 GT:AD:DP:GQ:PL 0/0:52,0:52:27.01:0,27,254 0/1:34,19:53:23.23:23,0,82 0/1:28,9:37:70.97:71,0,175 0/0:88,0:88:51.11:0,51,551 0/0:91,0:92:63.13:0,63,691 0/0:59,0:59:51.02:0,51,471 0/0:56,0:56:24.07:0,24,292 0/0:71,0:71:27.05:0,27,294 0/0:46,0:48:24.01:0,24,221 0/0:47,0:47:33.04:0,33,334 0/0:41,0:41:33.06:0,33,339 0/0:38,0:38:15.02:0,15,151 0/0:37,0:37:21.05:0,21,224 0/0:48,0:48:27.04:0,27,283 0/0:169,0:170:90.11:0,90,892 0/0:49,0:49:66.10:0,66,669 0/0:23,0:23:15.02:0,15,159 0/0:55,0:55:51.03:0,51,478 0/0:89,0:89:75.11:0,75,770 0/0:102,0:102:69.15:0,69,750 0/0:98,0:99:99:0,99,924 0/0:66,0:67:60.07:0,60,602 0/1:72,23:95:99:173,0,325 0/0:62,0:62:30.07:0,30,337 0/0:85,0:85:63.09:0,63,633 0/0:57,0:57:30.05:0,30,318 0/0:27,0:27:18.05:0,18,206 0/1:29,21:50:92.97:259,0,93 0/0:31,0:31:24.06:0,24,262 0/1:25,21:46:58.67:59,0,171 0/0:48,7:56:11.64:0,12,402 0/0:96,0:96:72.06:0,72,683 0/0:48,0:48:48.10:0,48,509 0/0:39,0:39:27.07:0,27,301 0/0:48,0:48:54.07:0,54,537 0/0:55,0:56:33.04:0,33,333 0/1:47,32:80:99:182,0,319 0/1:33,18:51:79.14:79,0,267 0/0:50,0:50:30.05:0,30,311 0/0:45,0:45:15.01:0,15,146 0/0:52,0:52:42.06:0,42,430 0/0:41,0:41:18.03:0,18,191 19 41382476 . T A 15194.63 . AC=8;AF=0.095;AN=84;BaseQRankSum=-22.804;DP=6248;DS;Dels=0.00;FS=12.025;HRun=0;HaplotypeScore=2.5237;InbreedingCoeff=-0.1053;MQ=52.92;MQ0=34;MQRankSum=3.895;QD=13.52;ReadPosRankSum=-1.265 GT:AD:DP:GQ:PL 0/0:129,0:129:99:0,352,4357 0/0:134,0:134:99:0,358,4410 0/0:126,0:126:99:0,349,4262 0/0:211,0:211:99:0,602,7476 0/0:180,0:180:99:0,518,6446 0/0:198,0:198:99:0,554,7128 0/0:178,0:178:99:0,506,6366 0/0:188,0:188:99:0,512,6416 0/0:140,0:140:99:0,358,4469 0/0:121,0:121:99:0,334,4076 0/0:129,0:129:99:0,340,4213 0/1:71,65:136:99:1683,0,2126 0/0:113,0:113:99:0,313,3829 0/1:57,65:122:99:1776,0,1634 0/0:249,0:250:99:0,680,8389 0/1:55,59:115:99:1673,0,1560 0/0:63,0:63:99:0,175,2090 0/0:125,0:125:99:0,346,4284 0/0:214,0:214:99:0,578,7148 0/0:185,0:185:99:0,487,6071 0/1:106,102:209:99:2525,0,2961 0/0:162,0:162:99:0,424,5305 0/0:215,0:216:99:0,611,7729 0/0:184,0:184:99:0,500,6381 0/0:193,0:194:99:0,560,7110 0/0:172,0:172:99:0,466,5881 0/0:58,0:58:99:0,159,1953 0/0:128,0:128:99:0,346,4252 0/0:59,0:59:99:0,163,2023 0/0:121,0:121:99:0,334,4094 0/1:51,70:122:99:1902,0,1462 0/1:89,74:163:99:1967,0,2543 0/0:158,0:159:99:0,433,5247 0/0:125,0:126:99:0,352,4282 0/0:141,0:141:99:0,385,4746 0/0:138,0:138:99:0,361,4482 0/0:206,0:207:99:0,536,6546 0/0:115,0:115:99:0,313,3840 0/0:133,0:133:99:0,364,4449 0/1:73,74:147:99:2015,0,2013 0/1:51,59:110:99:1653,0,1470 0/0:127,0:127:99:0,355,4347 19 41382560 . A T 1830.30 . AC=2;AF=0.024;AN=84;BaseQRankSum=-9.261;DP=4272;DS;Dels=0.00;FS=5.240;HRun=0;HaplotypeScore=1.7059;InbreedingCoeff=-0.0246;MQ=46.72;MQ0=179;MQRankSum=-2.230;QD=11.23;ReadPosRankSum=1.411 GT:AD:DP:GQ:PL 0/0:72,2:74:99:0,199,2282 0/0:79,0:79:99:0,202,2360 0/0:82,1:83:99:0,211,2441 0/0:160,0:160:99:0,436,5193 0/0:145,1:146:99:0,400,4691 0/0:102,1:103:99:0,271,3291 0/0:109,1:110:99:0,286,3429 0/0:98,3:101:99:0,271,3191 0/0:75,2:77:99:0,196,2277 0/0:75,3:78:99:0,195,2272 0/0:74,1:75:99:0,202,2314 0/0:91,2:93:99:0,232,2742 0/0:74,3:77:99:0,183,2117 0/0:86,2:88:99:0,229,2668 0/0:241,3:244:99:0,584,6917 0/0:86,2:88:99:0,232,2695 0/0:41,1:42:99:0,105,1199 0/0:76,3:80:99:0,199,2372 0/0:153,5:158:99:0,385,4561 0/0:150,4:154:99:0,409,4902 0/0:175,17:194:99:0,254,4908 0/0:100,19:119:17.59:0,18,2741 0/0:146,0:147:99:0,400,4711 0/0:88,1:90:99:0,229,2696 0/0:112,1:113:99:0,304,3617 0/0:92,2:94:99:0,238,2761 0/0:37,2:39:87.23:0,87,988 0/0:84,0:84:99:0,211,2435 0/0:24,4:28:63.16:0,63,736 0/0:84,3:88:99:0,226,2594 0/0:69,2:71:99:0,190,2232 0/0:153,2:156:99:0,397,4653 0/0:90,0:90:99:0,238,2784 0/0:88,0:89:99:0,247,2829 0/0:75,2:77:99:0,205,2356 0/0:89,1:90:99:0,241,2784 0/0:164,6:170:99:0,418,4873 0/0:94,4:98:99:0,244,2818 0/0:85,2:87:99:0,238,2723 0/1:42,39:82:99:972,0,1044 0/1:40,40:81:99:921,0,910 0/0:72,2:74:99:0,193,2204 19 41383799 . G A 46271.14 . AC=44;AF=0.524;AN=84;BaseQRankSum=4.575;DP=3856;DS;Dels=0.00;FS=0.246;HRun=0;HaplotypeScore=1.4869;InbreedingCoeff=0.0455;MQ=43.82;MQ0=295;MQRankSum=1.804;QD=16.41;ReadPosRankSum=2.090 GT:AD:DP:GQ:PL 0/1:50,31:82:99:772,0,1032 0/1:50,32:82:99:706,0,1121 0/0:62,0:62:99:0,141,1627 1/1:0,129:129:99:4155,343,0 1/1:3,127:131:99:3934,331,0 0/1:55,40:95:99:973,0,1183 0/1:48,35:83:99:858,0,1273 0/1:79,50:129:99:1257,0,1803 0/1:37,35:72:99:739,0,857 0/1:44,33:77:99:769,0,941 0/1:50,26:76:99:622,0,1170 0/1:40,40:80:99:947,0,968 1/1:2,68:70:99:1915,159,0 0/0:90,0:90:99:0,214,2507 0/1:142,108:250:99:2512,0,2917 0/0:97,0:97:99:0,226,2585 1/1:2,41:43:93.23:1091,93,0 0/0:73,0:73:99:0,192,2159 0/0:154,2:157:99:0,325,4147 0/0:162,0:162:99:0,385,4460 0/0:123,1:124:99:0,259,3250 0/0:80,0:80:99:0,208,2430 0/1:87,70:157:99:1845,0,2228 1/1:4,84:88:99:2566,211,0 0/1:55,36:91:99:967,0,1345 1/1:2,80:82:99:2489,211,0 1/1:2,23:25:66.18:772,66,0 0/1:50,32:82:99:805,0,1184 1/1:3,26:29:69.18:794,69,0 0/1:53,38:91:99:868,0,1318 0/0:63,1:64:99:0,125,1779 0/0:127,0:127:99:0,307,3518 1/1:2,95:97:99:2678,226,0 1/1:3,74:77:99:2077,177,0 0/1:40,26:66:99:633,0,953 0/1:34,30:64:99:614,0,724 0/1:61,57:118:99:1385,0,1269 0/1:36,29:65:99:712,0,905 1/1:6,85:91:99:2614,223,0 0/1:36,24:60:99:616,0,855 0/1:44,32:76:99:745,0,1005 1/1:2,59:62:99:1840,162,0 19 41383849 . C G 4364.39 . 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T C 27994.42 . 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T C 4118.56 . 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T G 825.57 . 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T C 13739.27 . 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A C 48518.66 . AC=44;AF=0.524;AN=84;BaseQRankSum=29.292;DP=4054;DS;Dels=0.00;FS=43.985;HRun=0;HaplotypeScore=2.9528;InbreedingCoeff=0.0455;MQ=41.03;MQ0=531;MQRankSum=-1.210;QD=16.28;ReadPosRankSum=3.480 GT:AD:DP:GQ:PL 0/1:51,32:83:99:844,0,1026 0/1:32,29:61:99:720,0,615 0/0:76,0:76:99:0,177,2068 1/1:5,182:187:99:5146,409,0 1/1:9,178:187:99:5226,409,0 0/1:67,53:120:99:1273,0,1465 0/1:56,45:101:99:1051,0,1293 0/1:73,59:132:99:1238,0,1463 0/1:34,23:57:99:634,0,646 0/1:41,29:71:99:697,0,914 0/1:34,26:60:99:603,0,723 0/1:56,38:94:99:868,0,1120 1/1:6,62:68:79.97:1641,80,0 0/0:89,0:89:99:0,183,2145 0/1:97,99:196:99:2470,0,2047 0/0:84,0:84:99:0,165,1907 1/1:8,34:42:75.19:917,75,0 0/0:89,0:90:99:0,189,2178 0/0:140,0:140:99:0,283,3254 0/0:174,0:174:99:0,373,4469 0/0:131,0:131:99:0,280,3310 0/0:89,0:89:99:0,202,2345 0/1:66,71:137:99:1817,0,1277 1/1:6,92:98:99:2589,208,0 0/1:59,62:121:99:1196,0,1265 1/1:8,101:109:99:2534,199,0 1/1:8,30:38:63.14:720,63,0 0/1:39,41:80:99:1089,0,607 1/1:5,40:45:84.25:1045,84,0 0/1:52,41:93:99:907,0,990 0/0:67,1:68:99:0,135,1577 0/0:131,0:132:99:0,289,3440 1/1:7,77:84:99:2038,171,0 1/1:5,79:84:99:2148,144,0 0/1:44,35:79:99:738,0,821 0/1:43,35:78:99:876,0,894 0/1:52,48:101:99:1060,0,1002 0/1:41,39:80:99:1086,0,631 1/1:5,84:89:99:2273,187,0 0/1:49,43:92:99:1087,0,1086 0/1:35,29:64:99:666,0,714 1/1:3,47:50:99:1324,108,0 19 41386420 . A C 23381.66 . 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C A 2042.21 . 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A G 1810.01 . 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A C 1572.51 . 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G A 2660.39 . AC=35;AF=0.417;AN=84;BaseQRankSum=-7.239;DP=843;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.6336;InbreedingCoeff=0.2839;MQ=51.65;MQ0=20;MQRankSum=-18.598;QD=6.82;ReadPosRankSum=-2.140 GT:AD:DP:GQ:PL 0/0:11,2:13:2.85:0,0,341 0/1:11,5:16:49.58:50,0,325 0/0:24,0:24:60.18:0,60,749 1/1:0,15:15:33.04:340,33,0 1/1:1,20:21:27.06:286,27,0 0/1:24,9:33:99:127,0,682 0/0:23,2:25:2.35:0,2,755 0/1:18,4:23:10.02:10,0,527 0/1:11,4:15:24.92:25,0,349 0/0:4,0:4:12.04:0,12,144 0/0:9,0:9:21.06:0,21,251 0/0:11,1:12:2.84:0,0,314 1/1:0,6:6:15:147,15,0 0/0:18,0:18:51.15:0,51,615 0/1:44,16:60:38.24:38,0,1268 0/0:30,0:30:78.25:0,78,977 0/1:1,2:3:26.48:26,0,32 0/0:23,0:23:66.18:0,66,780 0/0:44,0:44:99:0,114,1367 0/0:51,0:51:99:0,138,1634 0/0:60,0:61:99:0,165,1949 0/0:32,0:32:96.28:0,96,1140 0/1:18,13:31:99:187,0,591 1/1:0,7:7:12.03:134,12,0 0/0:16,2:18:14.71:0,15,552 1/1:0,7:7:14.98:135,15,0 1/1:0,2:2:6.01:59,6,0 0/0:12,3:16:13.39:0,13,370 1/1:0,6:6:6.02:66,6,0 0/1:10,3:13:30.79:31,0,298 0/0:21,0:21:57.16:0,57,682 0/0:43,0:43:99:0,120,1460 1/1:0,11:11:21:201,21,0 1/1:0,9:9:18.01:185,18,0 0/0:7,2:9:21.06:0,21,250 0/1:17,6:23:44.26:44,0,486 0/1:11,13:25:99:195,0,274 0/1:8,3:11:34.03:34,0,211 1/1:0,10:10:24.01:235,24,0 0/1:8,8:16:99:101,0,243 0/1:10,2:12:3.04:3,0,325 1/1:0,15:15:21.04:224,21,0 19 41387620 . A G 8395.55 . AC=40;AF=0.476;AN=84;BaseQRankSum=11.159;DP=1782;Dels=0.00;FS=4.014;HRun=1;HaplotypeScore=0.8464;InbreedingCoeff=-0.1384;MQ=33.25;MQ0=451;MQRankSum=-20.411;QD=6.83;ReadPosRankSum=-0.383 GT:AD:DP:GQ:PL 0/1:25,14:39:99:153,0,498 0/1:20,9:29:99:208,0,207 0/0:38,0:38:78.18:0,78,871 1/1:12,52:64:77.54:1020,78,0 1/1:5,34:39:69.04:705,69,0 0/1:40,15:55:99:167,0,838 0/1:24,7:31:48.07:48,0,568 0/1:37,11:48:99:114,0,704 0/1:19,13:32:99:167,0,451 0/1:16,5:21:43.63:44,0,359 0/1:25,8:33:99:120,0,468 0/1:25,8:33:99:110,0,523 1/1:7,19:26:32.99:324,33,0 0/0:49,0:49:93.27:0,93,1133 0/1:97,45:142:99:552,0,1716 0/0:59,0:59:99:0,123,1425 0/1:19,7:26:79.76:80,0,396 0/0:47,0:47:93.20:0,93,1064 0/0:66,0:66:99:0,129,1535 0/0:78,0:78:99:0,159,1894 0/0:71,0:71:99:0,162,1942 0/0:42,0:42:99:0,99,1222 0/1:50,23:73:99:380,0,1115 1/1:4,27:31:60.11:652,60,0 0/1:33,14:47:99:175,0,778 0/1:6,18:24:7.09:369,0,7 0/1:13,9:22:99:170,0,175 0/1:15,11:26:99:106,0,329 0/1:15,16:31:99:192,0,251 0/1:24,12:36:35.41:35,0,479 0/0:33,0:33:60.16:0,60,711 0/0:69,0:69:99:0,144,1792 1/1:6,15:21:15.02:161,15,0 1/1:4,20:24:42.06:449,42,0 0/1:32,7:39:20.37:20,0,661 0/1:22,6:28:53.30:53,0,381 0/1:27,19:46:99:244,0,430 0/1:20,14:34:99:111,0,422 1/1:10,34:44:50.40:764,50,0 0/1:18,9:27:77.75:78,0,396 0/1:16,11:27:99:178,0,364 1/1:5,27:32:42.07:446,42,0 19 41387647 . A G 4540.81 . AC=37;AF=0.440;AN=84;BaseQRankSum=-1.782;DP=1136;Dels=0.00;FS=117.010;HRun=0;HaplotypeScore=0.8212;InbreedingCoeff=0.0882;MQ=43.17;MQ0=21;MQRankSum=-23.747;QD=7.10;ReadPosRankSum=-1.440 GT:AD:DP:GQ:PL 0/1:16,10:26:86.62:87,0,472 0/1:8,4:12:26.04:26,0,247 0/0:25,0:25:72.17:0,72,795 1/1:1,34:35:42.60:618,43,0 1/1:0,26:26:56.98:542,57,0 0/0:24,7:31:13.07:0,13,710 0/1:11,5:17:67.15:67,0,325 0/1:25,5:30:76.33:76,0,674 0/1:21,6:27:19.48:19,0,594 0/1:15,12:27:99:118,0,433 0/1:13,2:15:17.03:17,0,342 0/1:16,4:20:19.79:20,0,492 1/1:0,10:10:23.91:191,24,0 0/0:33,0:33:90.26:0,90,1062 0/1:47,29:76:99:305,0,1302 0/0:35,0:35:99:0,102,1158 0/1:15,4:19:10.07:10,0,424 0/0:32,1:33:87.21:0,87,981 0/0:39,0:40:99:0,114,1331 0/0:56,1:58:99:0,153,1794 0/0:56,0:58:99:0,144,1716 0/0:41,0:41:99:0,114,1299 0/1:33,16:49:99:310,0,951 1/1:0,13:13:30.02:300,30,0 0/0:27,5:32:16.12:0,16,801 1/1:0,13:13:29.95:263,30,0 0/1:12,2:14:30.77:31,0,313 0/1:12,4:16:36.01:36,0,238 0/0:10,3:13:4.38:0,4,257 0/1:12,11:23:72.27:72,0,316 0/0:25,0:25:69.18:0,69,811 0/0:54,0:54:99:0,144,1731 1/1:0,14:14:21.01:203,21,0 1/1:0,15:15:36.01:353,36,0 0/1:14,7:21:8.01:8,0,448 0/0:16,2:18:16.59:0,17,509 0/1:14,15:29:99:253,0,356 0/1:18,5:23:4.91:5,0,562 1/1:1,21:22:23.29:402,23,0 0/1:11,5:17:17.02:17,0,335 0/1:17,5:22:21.67:22,0,501 1/1:0,9:9:17.99:168,18,0 19 41387656 . A T 4287.57 . AC=37;AF=0.440;AN=84;BaseQRankSum=0.036;DP=1036;Dels=0.00;FS=120.653;HRun=0;HaplotypeScore=0.9819;InbreedingCoeff=0.0847;MQ=43.94;MQ0=15;MQRankSum=-22.862;QD=7.17;ReadPosRankSum=-3.233 GT:AD:DP:GQ:PL 0/1:14,5:19:18.73:19,0,451 0/0:9,3:12:4.37:0,4,244 0/0:19,0:19:57.16:0,57,651 1/1:1,34:35:40.49:585,40,0 1/1:0,23:23:44.95:406,45,0 0/0:25,5:30:43.51:0,44,776 0/1:11,4:15:67.16:67,0,322 0/1:20,4:24:56.82:57,0,585 0/1:18,4:23:2.52:0,1,551 0/1:13,11:24:71.85:72,0,403 0/1:12,4:16:68.25:68,0,339 0/1:12,5:17:46.56:47,0,380 1/1:0,13:13:32.92:280,33,0 0/0:30,0:30:84.24:0,84,994 0/1:45,22:67:99:227,0,1274 0/0:29,0:30:84.24:0,84,975 0/1:14,7:21:29.68:30,0,421 0/0:28,0:29:84.24:0,84,973 0/0:38,0:38:99:0,108,1276 0/0:56,0:56:99:0,147,1751 0/0:52,0:53:99:0,138,1700 0/0:34,0:34:96.28:0,96,1137 0/1:32,13:45:99:193,0,907 1/1:0,7:7:17.97:154,18,0 0/1:22,6:28:24.20:24,0,727 1/1:0,14:14:29.95:266,30,0 0/0:10,0:10:24.07:0,24,286 0/1:9,7:16:99:125,0,206 0/1:9,5:14:44.94:45,0,245 0/1:9,11:20:99:138,0,259 0/0:25,0:25:69.20:0,69,823 0/0:52,0:52:99:0,141,1733 1/1:0,15:15:18:174,18,0 1/1:0,13:13:30:290,30,0 0/1:14,6:20:22.91:23,0,450 0/1:13,4:17:23.55:24,0,431 0/1:10,14:24:99:249,0,284 0/1:17,7:24:95.50:96,0,506 1/1:0,15:15:38.96:359,39,0 0/1:10,5:15:53.46:53,0,281 0/0:16,4:20:5.76:0,6,502 1/1:0,14:14:23.98:219,24,0 19 41512841 . G T 14099 . AC=22;AF=0.262;AN=84;BaseQRankSum=-24.549;DP=1972;Dels=0.00;FS=10.523;HRun=1;HaplotypeScore=0.8853;InbreedingCoeff=-0.1085;MQ=58.39;MQ0=4;MQRankSum=-0.796;QD=17.85;ReadPosRankSum=-0.885 GT:AD:DP:GQ:PL 0/1:16,29:45:99:816,0,471 0/1:14,22:36:99:664,0,397 0/0:24,0:24:72.23:0,72,918 0/0:78,0:78:99:0,226,2980 0/0:81,0:81:99:0,229,3095 0/0:90,0:90:99:0,250,3354 0/0:58,0:58:99:0,163,2186 0/0:81,1:82:99:0,198,3019 0/1:19,18:37:99:511,0,611 0/1:16,12:28:99:340,0,444 0/1:12,19:31:99:507,0,330 0/1:13,20:33:99:572,0,377 1/1:1,32:33:58.46:1030,58,0 0/1:16,23:40:99:692,0,493 1/1:0,122:122:99:4068,349,0 0/1:19,18:37:99:521,0,563 0/1:19,15:34:99:436,0,591 0/1:21,16:37:99:449,0,662 0/0:49,0:49:99:0,132,1651 0/0:67,0:67:99:0,193,2450 0/0:50,0:50:99:0,138,1767 0/0:33,0:33:96.30:0,96,1213 0/0:95,1:96:99:0,247,3770 0/0:62,0:62:99:0,184,2400 0/0:71,0:71:99:0,208,2791 0/0:63,1:64:99:0,156,2526 0/0:24,0:24:72.23:0,72,905 0/1:14,12:26:99:335,0,429 0/0:26,0:26:72.23:0,72,920 0/0:39,0:39:99:0,111,1391 0/0:30,0:30:84.26:0,84,1057 0/0:48,0:48:99:0,135,1749 0/0:40,0:40:99:0,114,1438 0/1:19,14:33:99:285,0,622 0/1:17,15:32:99:430,0,548 0/0:43,0:43:99:0,117,1506 0/1:32,17:49:99:431,0,1042 0/0:27,0:27:81.24:0,81,991 0/1:12,16:28:99:470,0,364 0/1:22,20:42:99:538,0,675 0/1:20,18:38:99:493,0,622 0/1:12,17:29:99:512,0,379 19 41515263 . A G 688.20 . 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C T 1521.97 . 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G GC 25776.63 . 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G A 74144.20 . 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T C 12488.05 . 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C T 257.63 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.066;DP=778;Dels=0.00;FS=2.732;HRun=0;HaplotypeScore=0.7089;InbreedingCoeff=-0.0122;MQ=58.22;MQ0=0;MQRankSum=0.648;QD=17.18;ReadPosRankSum=-0.933 GT:AD:DP:GQ:PL 0/0:12,0:12:36.10:0,36,415 0/0:16,0:16:45.13:0,45,538 0/0:14,0:14:42.11:0,42,475 0/0:26,0:26:69.19:0,69,845 0/0:32,0:32:90.26:0,90,1098 0/0:19,0:19:48.15:0,48,619 0/0:21,0:21:63.18:0,63,751 0/0:21,0:21:51.16:0,51,639 0/0:13,0:13:36.11:0,36,442 0/0:16,0:16:45.11:0,45,495 0/0:15,0:15:45.13:0,45,532 0/0:9,0:9:27.08:0,27,323 0/0:15,0:15:45.12:0,45,513 0/0:18,0:18:51.14:0,51,584 0/0:38,0:38:99:0,102,1171 0/0:22,0:22:57.16:0,57,666 0/0:16,0:16:42.13:0,42,517 0/0:19,0:19:51.14:0,51,588 0/0:25,0:25:75.20:0,75,844 0/0:27,0:27:69.17:0,69,799 0/0:23,0:23:60.16:0,60,688 0/0:25,0:25:60.16:0,60,686 0/0:45,0:45:99:0,123,1503 0/0:14,0:14:39.12:0,39,483 0/0:20,0:20:60.19:0,60,756 0/0:11,0:11:30.08:0,30,370 0/0:14,0:14:39.11:0,39,455 0/1:5,10:15:99:304,0,123 0/0:11,0:11:30.09:0,30,368 0/0:11,0:11:27.07:0,27,304 0/0:14,0:15:39.11:0,39,457 0/0:22,0:22:60.17:0,60,694 0/0:15,0:15:45.10:0,45,504 0/0:7,0:7:21.06:0,21,246 0/0:18,0:18:51.15:0,51,603 0/0:17,0:17:51.15:0,51,598 0/0:24,0:25:63.18:0,63,755 0/0:16,0:16:42.12:0,42,507 0/0:16,0:16:48.13:0,48,556 0/0:14,0:14:39.12:0,39,474 0/0:14,0:14:42.12:0,42,498 0/0:16,0:16:42.11:0,42,477 19 41630769 . C T 311 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.544;DP=1118;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7127;InbreedingCoeff=-0.0244;MQ=57.06;MQ0=0;MQRankSum=2.785;QD=6.22;ReadPosRankSum=-2.257 GT:AD:DP:GQ:PL 0/0:28,0:28:81.23:0,81,943 0/0:22,0:22:60.14:0,60,686 0/0:29,0:29:72.16:0,72,846 0/0:49,0:49:99:0,123,1590 0/0:36,0:36:93.28:0,93,1171 0/0:28,0:28:78.23:0,78,960 0/0:25,0:25:66.21:0,66,855 0/0:23,0:23:54.17:0,54,681 0/0:18,0:18:48.10:0,48,558 0/0:18,0:18:48.14:0,48,565 0/0:15,0:15:42.11:0,42,488 0/0:24,0:24:63.17:0,63,741 0/0:30,0:30:81.22:0,81,938 0/0:25,0:25:69.19:0,69,813 0/0:72,0:72:99:0,193,2296 0/0:30,0:30:78.23:0,78,931 0/0:22,0:22:63.17:0,63,740 0/0:21,0:21:54.14:0,54,650 0/0:37,0:37:96.26:0,96,1145 0/0:43,0:43:99:0,114,1333 0/1:17,7:25:99:153,0,431 0/1:16,9:25:99:221,0,398 0/0:47,0:47:99:0,120,1573 0/0:15,0:15:39.12:0,39,503 0/0:25,0:25:57.18:0,57,751 0/0:20,0:20:60.16:0,60,737 0/0:11,0:11:33.10:0,33,399 0/0:20,0:20:54.16:0,54,655 0/0:21,0:21:51.16:0,51,643 0/0:28,0:28:78.22:0,78,928 0/0:23,0:23:66.21:0,66,827 0/0:24,0:24:66.18:0,66,786 0/0:17,0:17:45.12:0,45,512 0/0:19,0:19:54.12:0,54,602 0/0:21,0:21:57.15:0,57,656 0/0:23,0:23:60.16:0,60,723 0/0:39,0:39:93.26:0,93,1132 0/0:27,0:27:72.14:0,72,804 0/0:19,0:19:51.14:0,51,593 0/0:26,0:26:72.21:0,72,863 0/0:25,0:25:75.21:0,75,871 0/0:23,0:23:60.14:0,60,681 19 41700493 . G C 76800.62 . 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C T 710.83 . 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C T 1987.50 . 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A C 100.97 . 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T C 18347.41 . 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G A 3646.50 . 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G A 95930.19 . 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C T 31403.47 . 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C G 21591.25 . 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G A 3492.48 . AC=4;AF=0.048;AN=84;BaseQRankSum=-8.415;DP=1869;Dels=0.00;FS=0.332;HRun=1;HaplotypeScore=1.3738;InbreedingCoeff=-0.0500;MQ=58.96;MQ0=0;MQRankSum=-1.372;QD=13.08;ReadPosRankSum=-0.509 GT:AD:DP:GQ:PL 0/0:36,0:36:93.29:0,93,1178 0/0:29,0:29:75.22:0,75,918 0/0:29,0:29:84.24:0,84,1021 0/0:68,0:69:99:0,160,2128 0/0:58,0:58:99:0,129,1761 0/0:65,0:65:99:0,168,2204 0/0:34,0:34:81.27:0,81,1113 0/0:38,0:38:99:0,99,1317 0/0:40,0:41:99:0,102,1250 0/0:30,0:30:75.22:0,75,931 0/0:26,0:26:78.25:0,78,981 0/0:35,0:35:93.27:0,93,1145 0/0:31,1:33:75.17:0,75,907 0/0:32,0:32:84.26:0,84,1057 0/1:65,72:137:99:1986,0,1533 0/0:19,0:19:54.15:0,54,675 0/1:29,13:42:99:348,0,819 0/0:44,0:44:99:0,117,1485 0/0:66,0:66:99:0,159,1927 0/0:82,0:82:99:0,214,2635 0/0:57,0:58:99:0,150,1871 0/0:53,0:53:99:0,129,1619 0/0:56,0:56:99:0,132,1782 0/0:29,0:29:75.22:0,75,991 0/0:56,1:57:99:0,135,1774 0/0:31,0:31:60.20:0,60,838 0/0:26,0:26:66.21:0,66,858 0/0:27,0:27:69.21:0,69,856 0/0:30,0:30:84.25:0,84,1025 0/0:40,0:40:99:0,105,1323 0/0:22,0:22:54.15:0,54,664 0/0:74,0:74:99:0,190,2380 0/0:38,0:38:99:0,105,1281 0/1:18,16:34:99:457,0,557 0/0:57,0:57:99:0,147,1881 0/1:27,27:54:99:701,0,722 0/0:63,0:63:99:0,165,1994 0/0:41,0:41:99:0,108,1363 0/0:37,0:37:99:0,99,1233 0/0:32,0:32:87.24:0,87,1062 0/0:33,0:33:87.27:0,87,1100 0/0:32,0:32:93.27:0,93,1144 19 42085774 . A C 255.49 . AC=9;AF=0.107;AN=84;BaseQRankSum=-17.172;DP=1868;Dels=0.00;FS=277.110;HRun=2;HaplotypeScore=1.0744;InbreedingCoeff=-0.1539;MQ=58.55;MQ0=0;MQRankSum=0.011;QD=0.70;ReadPosRankSum=-5.548 GT:AD:DP:GQ:PL 0/0:19,14:33:13.75:0,14,464 0/1:15,16:31:27.69:28,0,394 0/0:14,13:27:39.07:0,39,438 0/0:38,40:78:50.03:0,50,1067 0/0:16,38:56:48.14:0,48,560 0/0:24,26:50:57.14:0,57,670 0/0:27,19:46:75.19:0,75,857 0/0:18,31:51:51.15:0,51,609 0/1:18,12:30:6.90:7,0,524 0/0:20,18:38:18.65:0,19,529 0/0:25,13:38:65.40:0,65,745 0/0:27,16:43:24.65:0,25,798 0/0:13,9:22:36.09:0,36,413 0/0:22,10:33:48.14:0,48,574 0/0:73,57:130:28.74:0,29,2141 0/0:18,9:27:51.15:0,51,607 0/0:21,12:33:37.48:0,37,662 0/1:15,14:29:13.05:13,0,426 0/0:29,27:56:43.77:0,44,775 0/0:55,26:81:99:0,147,1667 0/0:41,31:73:22.87:0,23,1179 0/0:30,18:48:84.24:0,84,979 0/1:25,49:74:25.99:26,0,653 0/0:18,19:37:17.47:0,17,478 0/1:18,21:39:12.72:13,0,453 0/0:13,22:35:26.73:0,27,277 0/0:11,8:19:3.45:0,3,312 0/0:20,19:39:1.62:3,0,588 0/1:14,22:36:20.71:21,0,416 0/0:17,16:34:21.52:0,22,527 0/0:19,11:30:0.36:0,0,598 0/0:40,31:71:99:0,108,1259 0/0:28,15:43:41.76:0,42,792 0/0:19,20:39:1.46:4,0,516 0/0:24,13:38:66.18:0,66,766 0/0:19,16:35:23.49:0,23,552 0/1:41,27:69:99:215,0,1189 0/0:25,16:41:5.94:0,6,619 0/1:7,12:19:21.33:21,0,203 0/1:24,13:37:29.47:29,0,660 0/0:23,14:38:63.18:0,63,720 0/0:25,15:42:46.65:0,47,825 19 42085873 . A G 23297.99 . AC=47;AF=0.560;AN=84;BaseQRankSum=18.676;DP=1363;Dels=0.00;FS=2.458;HRun=0;HaplotypeScore=1.6780;InbreedingCoeff=0.1786;MQ=59.07;MQ0=0;MQRankSum=0.413;QD=22.04;ReadPosRankSum=-0.222 GT:AD:DP:GQ:PL 0/1:17,10:27:99:234,0,509 0/1:13,13:26:99:422,0,333 1/1:0,21:21:63.20:784,63,0 0/1:15,19:34:99:584,0,409 1/1:0,25:25:63.21:868,63,0 0/0:32,0:32:90.28:0,90,1119 0/0:27,0:27:75.20:0,75,893 0/1:17,13:30:99:321,0,457 0/0:27,0:27:69.19:0,69,829 0/0:32,2:34:45.47:0,45,956 0/1:14,21:35:99:655,0,369 1/1:0,25:25:72.22:893,72,0 1/1:1,25:26:26.76:709,27,0 1/1:0,31:31:84.26:1039,84,0 0/1:52,33:85:99:784,0,1425 0/1:12,11:23:99:255,0,339 0/1:17,11:29:99:313,0,520 0/0:31,0:31:87.25:0,87,1026 0/1:35,25:60:99:629,0,1023 1/1:0,73:73:99:2427,196,0 1/1:0,49:49:99:1734,141,0 0/1:23,14:37:99:370,0,635 0/1:17,16:33:99:469,0,433 1/1:0,26:26:66.22:902,66,0 1/1:0,30:30:69.20:912,69,0 0/1:14,11:25:99:333,0,382 0/0:20,0:20:57.17:0,57,672 0/0:16,0:16:42.12:0,42,504 0/1:11,11:22:99:291,0,327 1/1:0,26:26:63.20:811,63,0 1/1:0,20:20:60.18:739,60,0 1/1:0,52:53:99:1672,129,0 0/1:17,17:34:99:475,0,452 0/1:14,11:25:99:287,0,391 0/1:6,12:18:99:370,0,142 0/1:17,16:33:99:431,0,493 0/0:66,0:66:99:0,166,2034 0/0:24,1:25:26.20:0,26,731 0/0:28,0:28:81.24:0,81,960 1/1:0,30:30:81.25:1007,81,0 1/1:0,20:20:48.15:617,48,0 1/1:0,26:26:78.24:961,78,0 19 42085880 . C T 889.96 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.952;DP=1299;Dels=0.00;FS=6.565;HRun=0;HaplotypeScore=1.7132;InbreedingCoeff=-0.0245;MQ=59.08;MQ0=0;MQRankSum=1.396;QD=8.48;ReadPosRankSum=1.382 GT:AD:DP:GQ:PL 0/0:29,0:29:72.23:0,72,920 0/0:27,0:27:69.22:0,69,891 0/0:22,0:22:60.19:0,60,767 0/0:34,0:34:90.28:0,90,1179 0/0:25,0:25:63.19:0,63,840 0/0:31,0:31:84.25:0,84,1092 0/0:27,0:27:72.23:0,72,945 0/0:28,0:28:66.19:0,66,867 0/0:24,0:24:54.16:0,54,686 0/0:31,0:31:81.25:0,81,1024 0/0:32,0:32:87.26:0,87,1079 0/0:24,0:24:72.22:0,72,887 0/0:26,0:26:63.20:0,63,816 0/0:31,0:31:81.23:0,81,1000 0/1:52,30:83:99:764,0,1524 0/1:13,9:22:99:189,0,354 0/0:31,0:31:87.27:0,87,1082 0/0:27,0:28:72.21:0,72,895 0/0:55,1:57:99:0,131,1782 0/0:68,0:68:99:0,184,2305 0/0:45,0:45:99:0,126,1570 0/0:35,0:35:93.26:0,93,1127 0/0:29,0:29:78.25:0,78,1044 0/0:25,0:25:63.21:0,63,876 0/0:26,0:26:60.19:0,60,815 0/0:22,1:23:21.05:0,21,683 0/0:20,0:20:57.18:0,57,713 0/0:16,0:16:45.14:0,45,577 0/0:20,0:20:57.17:0,57,705 0/0:24,0:24:63.19:0,63,779 0/0:16,0:16:45.14:0,45,566 0/0:50,0:50:99:0,129,1674 0/0:32,0:32:78.25:0,78,1024 0/0:24,0:24:66.20:0,66,833 0/0:18,0:18:48.15:0,48,607 0/0:30,0:30:84.26:0,84,1065 0/0:62,0:62:99:0,156,1972 0/0:23,0:23:63.19:0,63,792 0/0:29,0:29:84.25:0,84,1043 0/0:27,0:27:72.22:0,72,900 0/0:19,0:19:54.17:0,54,687 0/0:26,0:26:78.21:0,78,942 19 42218984 . C T 2313.84 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.988;DP=8264;DS;Dels=0.00;FS=1.303;HRun=0;HaplotypeScore=4.8580;InbreedingCoeff=-0.0120;MQ=54.42;MQ0=4;MQRankSum=1.766;QD=14.55;ReadPosRankSum=0.795 GT:AD:DP:GQ:PL 0/0:168,0:168:99:0,481,5497 0/0:185,0:186:99:0,532,5979 0/1:74,85:159:99:2360,0,1958 0/0:241,0:241:99:0,689,8504 0/0:241,0:241:99:0,710,8804 0/0:249,0:249:99:0,680,8427 0/0:179,0:179:99:0,512,6334 0/0:214,0:215:99:0,608,7328 0/0:199,0:199:99:0,581,6608 0/0:174,0:174:99:0,496,5528 0/0:187,0:187:99:0,532,6002 0/0:167,0:167:99:0,466,5310 0/0:126,1:128:99:0,315,3891 0/0:196,0:196:99:0,559,6353 0/0:249,1:250:99:0,674,7579 0/0:194,0:194:99:0,544,6140 0/0:208,0:208:99:0,586,6548 0/0:176,0:177:99:0,490,5510 0/0:247,0:250:99:0,692,7869 0/0:241,2:243:99:0,602,7428 0/0:247,0:247:99:0,680,7789 0/0:177,0:177:99:0,493,5637 0/0:250,0:250:99:0,701,8813 0/0:173,0:173:99:0,472,5841 0/0:206,0:206:99:0,572,7148 0/0:190,0:190:99:0,536,6549 0/0:135,0:135:99:0,376,4304 0/0:189,0:189:99:0,544,6076 0/0:163,0:163:99:0,451,5127 0/0:176,0:177:99:0,478,5407 0/0:166,0:166:99:0,478,5455 0/0:232,0:232:99:0,632,7324 0/0:209,0:209:99:0,580,6578 0/0:182,0:183:99:0,517,5774 0/0:203,0:203:99:0,553,6356 0/0:197,0:198:99:0,553,6309 0/0:247,0:248:99:0,650,7424 0/0:176,0:176:99:0,493,5590 0/0:187,0:187:99:0,541,6093 0/0:195,0:195:99:0,553,6241 0/0:153,0:153:99:0,424,4927 0/0:196,0:196:99:0,550,6357 19 42312933 . G A 26493.29 . AC=17;AF=0.202;AN=84;BaseQRankSum=-2.174;DP=5281;DS;Dels=0.00;FS=27.397;HRun=0;HaplotypeScore=3.7194;InbreedingCoeff=-0.1062;MQ=59.31;MQ0=0;MQRankSum=-1.096;QD=13.18;ReadPosRankSum=-1.010 GT:AD:DP:GQ:PL 0/0:74,0:74:99:0,199,2344 0/0:82,0:83:99:0,220,2455 0/0:68,0:68:99:0,192,2195 0/0:248,0:250:99:0,671,8284 0/0:245,0:245:99:0,662,8273 0/1:133,108:242:99:2791,0,3493 0/1:91,99:192:99:2662,0,2375 0/0:214,0:214:99:0,557,6903 0/0:81,0:81:99:0,220,2527 0/0:69,0:69:99:0,201,2256 0/0:80,0:80:99:0,223,2526 0/1:45,24:70:99:606,0,1256 0/1:27,24:51:99:636,0,713 0/0:87,0:87:99:0,235,2719 0/1:140,106:248:99:2718,0,3506 0/1:46,45:92:99:1201,0,1167 0/1:46,41:87:99:1070,0,1214 0/0:88,0:88:99:0,244,2834 0/1:84,96:181:99:2528,0,2033 0/1:91,86:178:99:2272,0,2409 0/0:168,0:169:99:0,430,5001 0/0:96,0:96:99:0,253,2898 0/0:246,0:246:99:0,668,8266 0/0:188,0:189:99:0,472,5916 0/0:241,0:243:99:0,617,7768 0/0:189,0:189:99:0,499,6139 0/0:56,0:56:99:0,153,1781 0/0:68,0:69:99:0,183,2021 0/0:60,0:61:99:0,171,1983 0/0:82,2:84:99:0,199,2647 0/0:72,0:72:99:0,205,2341 0/1:96,80:176:99:2010,0,2489 0/0:140,0:140:99:0,364,4206 0/1:35,42:77:99:1179,0,891 0/1:47,49:96:99:1196,0,1161 1/1:2,86:90:99:2723,173,0 0/0:178,1:181:99:0,472,5370 0/0:67,0:67:99:0,171,2033 0/0:70,0:70:99:0,183,2126 0/1:35,48:84:99:1304,0,826 0/1:38,24:62:99:587,0,1011 0/1:45,36:83:99:1010,0,1154 19 42341407 . G C 1611.74 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.154;DP=6309;DS;Dels=0.00;FS=8.575;HRun=0;HaplotypeScore=2.8852;InbreedingCoeff=-0.0120;MQ=59.49;MQ0=0;MQRankSum=0.174;QD=14.92;ReadPosRankSum=1.092 GT:AD:DP:GQ:PL 0/0:125,0:125:99:0,340,4208 0/0:133,0:135:99:0,361,4445 0/0:106,0:106:99:0,307,3707 0/0:211,0:211:99:0,584,7582 0/0:213,0:213:99:0,593,7797 0/0:190,0:190:99:0,536,7006 0/0:167,0:167:99:0,454,5961 0/0:185,0:185:99:0,521,6899 0/0:130,0:132:99:0,349,4332 0/0:116,0:117:99:0,313,3849 0/0:120,0:120:99:0,340,4138 0/0:107,0:107:99:0,301,3660 0/0:90,0:90:99:0,250,3082 0/0:126,0:126:99:0,337,4169 0/0:225,0:226:99:0,605,7145 0/0:96,0:96:99:0,280,3376 0/0:129,0:129:99:0,355,4344 0/0:111,0:111:99:0,307,3765 0/0:215,0:216:99:0,578,6982 0/0:207,0:207:99:0,560,6982 0/0:209,0:211:99:0,554,6726 0/0:155,0:155:99:0,421,5209 0/0:196,0:196:99:0,560,7411 0/0:185,0:185:99:0,500,6543 0/0:195,0:195:99:0,548,7216 0/0:171,0:171:99:0,470,6215 0/0:108,0:109:99:0,292,3550 0/0:152,0:152:99:0,403,4920 0/0:122,0:122:99:0,337,4139 0/0:112,0:112:99:0,307,3710 0/0:110,0:110:99:0,298,3693 0/0:220,0:221:99:0,593,7375 0/0:188,0:188:99:0,502,6152 0/0:135,0:135:99:0,361,4477 0/0:134,0:134:99:0,361,4434 0/1:53,55:108:99:1658,0,1531 0/0:201,0:203:99:0,526,6303 0/0:130,0:130:99:0,346,4238 0/0:131,0:131:99:0,373,4525 0/0:119,0:119:99:0,325,4010 0/0:102,0:102:99:0,295,3585 0/0:111,0:111:99:0,307,3757 19 42351889 . G A 229.57 . AC=11;AF=0.131;AN=84;BaseQRankSum=-6.848;DP=444;Dels=0.00;FS=99.017;HRun=2;HaplotypeScore=0.2647;InbreedingCoeff=-0.1988;MQ=58.57;MQ0=0;MQRankSum=-0.338;QD=1.95;ReadPosRankSum=-5.160 GT:AD:DP:GQ:PL 0/0:8,0:8:21.07:0,21,267 0/0:7,2:9:2.71:1,0,232 0/1:9,3:12:8.57:9,0,194 0/1:12,5:17:23.04:23,0,363 0/0:10,3:13:24.08:0,24,312 0/0:7,1:8:18.05:0,18,213 0/1:5,3:8:39.15:39,0,168 0/0:8,1:9:21.06:0,21,255 0/1:4,3:8:9.17:9,0,93 0/0:11,1:12:1.65:3,0,294 0/1:8,3:11:68.29:68,0,203 0/0:12,3:15:27.09:0,27,339 0/0:4,0:4:9.02:0,9,103 0/0:9,1:10:27.08:0,27,336 0/0:19,6:25:1.22:0,1,575 0/1:7,4:11:11.43:11,0,205 0/0:8,1:9:24.07:0,24,282 0/0:6,1:7:15.05:0,15,190 0/0:14,0:14:39.07:0,39,421 0/0:15,3:18:13.47:0,13,454 0/1:7,4:12:99:107,0,191 0/0:8,2:10:16.84:0,17,175 0/0:8,4:12:18.04:0,18,207 0/0:9,1:10:27.08:0,27,323 0/0:13,1:14:12.41:0,12,406 0/1:8,2:10:8.63:9,0,163 0/0:4,0:4:3.01:0,3,36 0/0:5,0:5:15.05:0,15,194 0/0:2,1:3:6.02:0,6,76 0/0:13,1:14:39.08:0,39,452 0/1:3,2:5:17.59:18,0,100 0/0:19,3:22:40.93:0,41,473 0/0:15,3:18:1.14:5,0,477 0/0:7,0:7:21.02:0,21,232 0/0:8,0:8:24.08:0,24,302 0/0:5,0:5:12.03:0,12,147 0/1:8,6:16:49.37:49,0,145 0/0:6,2:8:15.04:0,15,177 0/0:10,1:11:24.07:0,24,290 0/0:7,1:8:18.01:0,18,186 0/0:6,0:6:15.03:0,15,176 0/1:6,2:8:10.65:11,0,131 19 42485768 . C T 290.88 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.762;DP=1782;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.2717;InbreedingCoeff=-0.0120;MQ=58.85;MQ0=0;MQRankSum=0.276;QD=8.31;ReadPosRankSum=0.753 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,108,1278 0/0:27,0:27:75.21:0,75,860 0/0:32,0:32:84.18:0,84,924 0/0:69,0:69:99:0,177,2110 0/0:52,0:52:99:0,135,1596 0/0:51,0:51:99:0,135,1633 0/0:42,0:42:99:0,114,1361 0/0:37,0:37:96.21:0,96,1149 0/0:46,0:47:99:0,123,1363 0/0:42,0:42:99:0,111,1266 0/0:33,0:33:81.20:0,81,932 0/0:33,0:33:81.21:0,81,928 0/0:29,0:29:81.19:0,81,892 0/0:35,0:35:93.24:0,93,1056 0/0:110,0:110:99:0,289,3280 0/0:40,0:40:99:0,111,1257 0/0:30,0:30:75.17:0,75,812 0/0:36,0:36:90.22:0,90,1002 0/0:36,0:36:99:0,99,1123 0/0:63,0:64:99:0,174,1942 0/0:53,0:53:99:0,141,1589 0/0:45,0:45:99:0,120,1294 0/0:62,0:62:99:0,168,1935 0/0:26,0:27:54.16:0,54,669 0/0:44,0:44:99:0,111,1299 0/0:32,0:32:87.25:0,87,1047 0/0:31,0:31:84.18:0,84,921 0/0:34,0:34:75.18:0,75,851 0/0:25,0:25:69.17:0,69,764 0/0:36,0:36:99:0,102,1171 0/0:39,0:40:99:0,102,1137 0/0:78,0:79:99:0,216,2372 0/0:48,0:48:99:0,141,1565 0/0:31,0:31:87.23:0,87,1001 0/0:34,0:34:93.22:0,93,1032 0/1:21,14:35:99:337,0,397 0/0:67,1:70:99:0,162,1904 0/0:40,0:41:96.27:0,96,1134 0/0:40,0:40:99:0,108,1206 0/0:21,0:21:54.15:0,54,627 0/0:36,0:36:93.24:0,93,1049 0/0:31,0:31:93.23:0,93,1038 19 42791994 . T C 1033.49 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.109;DP=996;Dels=0.00;FS=1.418;HRun=0;HaplotypeScore=0.8342;InbreedingCoeff=-0.0252;MQ=59.21;MQ0=0;MQRankSum=-0.345;QD=11.74;ReadPosRankSum=-1.486 GT:AD:DP:GQ:PL 0/0:17,0:17:45.14:0,45,568 0/0:24,0:24:63.20:0,63,800 0/0:21,0:21:51.15:0,51,637 0/0:27,0:27:81.24:0,81,980 0/0:38,0:38:99:0,114,1455 0/0:24,0:25:66.21:0,66,853 0/0:22,0:22:57.18:0,57,745 0/0:29,0:29:75.24:0,75,980 0/0:15,0:16:39.12:0,39,479 0/0:11,0:11:33.10:0,33,405 0/0:15,0:15:45.14:0,45,555 0/0:17,0:17:48.15:0,48,589 0/0:19,0:19:54.14:0,54,643 0/0:23,0:23:63.19:0,63,775 0/1:43,30:73:99:849,0,1306 0/0:17,0:17:51.15:0,51,605 0/1:7,8:15:99:247,0,203 0/0:15,0:15:45.14:0,45,552 0/0:49,0:49:99:0,129,1616 0/0:39,0:39:99:0,108,1351 0/0:55,0:55:99:0,135,1704 0/0:25,0:26:69.21:0,69,849 0/0:41,0:41:99:0,117,1457 0/0:20,0:20:57.16:0,57,708 0/0:19,0:19:57.18:0,57,728 0/0:14,0:14:39.13:0,39,502 0/0:20,0:20:60.18:0,60,735 0/0:15,0:15:45.14:0,45,551 0/0:4,0:4:12.04:0,12,144 0/0:17,0:17:48.14:0,48,581 0/0:23,0:23:60.18:0,60,744 0/0:23,0:23:63.16:0,63,748 0/0:27,0:27:81.24:0,81,969 0/0:12,0:12:33.10:0,33,417 0/0:14,0:14:39.12:0,39,471 0/0:11,0:11:33.10:0,33,405 0/0:35,0:35:90.28:0,90,1133 0/0:15,0:15:45.14:0,45,552 0/0:31,0:31:90.28:0,90,1107 0/0:23,0:23:63.19:0,63,768 0/0:18,0:18:51.16:0,51,621 0/0:20,0:20:60.18:0,60,730 19 42795826 . G C 113.30 . AC=5;AF=0.060;AN=84;BaseQRankSum=-1.907;DP=1764;DS;Dels=0.00;FS=623.326;HRun=2;HaplotypeScore=2.1690;InbreedingCoeff=-0.0838;MQ=58.86;MQ0=0;MQRankSum=1.853;QD=0.99;ReadPosRankSum=-11.801 GT:AD:DP:GQ:PL 0/0:13,1:14:0.51:0,1,340 0/1:18,3:21:22.77:23,0,492 0/0:17,2:20:17.49:0,17,428 0/0:122,18:140:61.91:0,62,3694 0/0:104,10:114:99:0,173,3391 0/0:84,10:94:99:0,119,2601 0/0:57,6:63:55.58:0,56,1644 0/0:80,13:93:27.68:0,28,2425 0/0:21,1:22:54.14:0,54,592 0/0:22,0:22:63.15:0,63,683 0/0:17,1:18:18.61:0,19,487 0/0:20,1:21:54.13:0,54,571 0/0:15,1:16:45.12:0,45,492 0/0:20,4:25:28.80:0,29,614 0/0:72,4:76:99:0,143,2143 0/0:23,3:26:2.05:2,0,618 0/0:23,1:24:29.71:0,30,596 0/0:31,1:32:54.94:0,55,882 0/0:32,2:34:35.03:0,35,896 0/0:49,5:54:38.70:0,39,1419 0/0:44,1:45:71.98:0,72,1149 0/0:30,2:32:44.59:0,45,759 0/0:101,8:109:99:0,164,3189 0/0:59,6:65:75.27:0,75,1792 0/0:79,7:86:56.04:0,56,2553 0/0:69,5:74:79.44:0,79,2209 0/0:17,3:20:19.79:0,20,534 0/0:15,1:16:42.11:0,42,459 0/1:19,5:24:54.82:55,0,557 0/0:24,4:28:12.94:0,13,641 0/0:20,0:20:54.13:0,54,586 0/0:41,3:45:15.31:0,15,1082 0/0:36,4:40:42.49:0,42,1033 0/0:18,2:20:21.89:0,22,548 0/1:19,2:21:11.27:11,0,498 0/0:20,1:21:21.57:0,22,575 0/0:46,3:49:67.08:0,67,1217 0/0:18,3:21:9.85:0,10,409 0/1:27,4:31:20.24:20,0,767 0/0:19,2:21:57.14:0,57,608 0/1:13,5:18:96.46:96,0,361 0/0:27,2:29:4.68:0,5,666 19 42795827 . G C 618.58 . AC=19;AF=0.226;AN=84;BaseQRankSum=-11.908;DP=1793;DS;Dels=0.00;FS=1062.455;HRun=2;HaplotypeScore=2.1079;InbreedingCoeff=-0.3152;MQ=58.85;MQ0=0;MQRankSum=1.414;QD=0.71;ReadPosRankSum=-12.853 GT:AD:DP:GQ:PL 0/1:12,3:15:6.21:6,0,343 0/1:17,3:20:20.77:21,0,529 0/1:16,3:19:9.05:9,0,462 0/1:120,28:148:31.90:32,0,4011 0/1:94,18:112:50.53:51,0,3120 0/0:77,19:96:22.88:0,23,2539 0/1:48,16:64:99:100,0,1640 0/1:78,18:96:89.81:90,0,2562 0/0:19,3:22:57.17:0,57,706 0/0:21,2:23:54.16:0,54,667 0/0:16,2:18:13.78:0,14,508 0/0:17,1:18:18.65:0,19,553 0/0:15,1:16:42.13:0,42,523 0/1:20,5:25:34.10:34,0,585 0/0:68,7:77:95.81:0,96,2195 0/0:21,3:24:0.50:0,1,699 0/0:21,3:24:24.92:0,25,651 0/0:29,5:34:29.13:0,29,934 0/0:29,5:34:24.25:0,24,921 0/1:47,10:57:19.85:20,0,1561 0/0:44,2:46:81:0,81,1340 0/0:26,5:31:10.46:0,10,760 0/0:97,20:117:40.70:0,41,3345 0/0:54,12:66:47.25:0,47,1788 0/1:75,12:87:3.22:3,0,2619 0/0:65,11:76:35.13:0,35,2299 0/0:16,6:22:17.72:0,18,565 0/0:14,5:19:8.51:0,9,394 0/1:19,6:25:64.10:64,0,640 0/1:22,4:26:20.16:20,0,713 0/0:16,2:18:14.55:0,15,500 0/0:38,7:45:1.99:2,0,1041 0/1:35,4:39:18.21:18,0,1158 0/1:16,4:20:8.85:9,0,529 0/1:18,5:23:36.89:37,0,554 0/0:20,2:22:25.40:0,25,704 0/0:45,6:51:2.07:2,0,1293 0/1:16,6:22:99:115,0,448 0/1:23,6:29:18.58:19,0,708 0/0:18,2:20:27.55:0,28,643 0/1:12,6:18:99:117,0,374 0/1:23,6:29:8.65:9,0,764 19 42795827 . G GC 571.84 . AC=12;AF=0.143;AN=84;BaseQRankSum=22.678;DP=2061;DS;FS=1665.453;HRun=2;HaplotypeScore=251.4114;InbreedingCoeff=-0.1999;MQ=55.87;MQ0=0;MQRankSum=-7.248;QD=0.82;ReadPosRankSum=-19.822 GT:AD:DP:GQ:PL 0/1:22,0:22:5.90:6,0,329 0/1:26,0:26:13.49:13,0,464 0/1:21,0:21:28.09:28,0,440 0/0:170,0:169:97.72:0,98,3605 0/1:132,0:132:71.85:72,0,2754 0/0:112,0:109:7.43:0,7,2250 0/1:77,0:76:79.77:80,0,1473 0/1:105,0:105:99:167,0,2054 0/0:27,0:27:28.06:0,28,657 0/0:26,0:26:31.12:0,31,582 0/1:20,0:20:5.73:6,0,426 0/0:21,0:21:0.97:0,1,526 0/0:19,0:19:37.07:0,37,493 0/0:24,0:24:20.13:0,20,577 0/0:81,0:81:63.48:0,63,1816 0/0:28,0:28:25.52:0,26,567 0/0:28,0:28:5.84:0,6,574 0/0:37,0:37:52.68:0,53,900 0/0:37,0:37:47.38:0,47,797 0/0:62,0:62:48.24:0,48,1394 0/0:43,7:50:68.08:0,68,1155 0/0:34,0:34:40.67:0,41,849 0/1:151,0:151:99:191,0,3044 0/0:66,0:66:18.63:0,19,1424 0/0:101,0:98:88.71:0,89,2335 0/0:90,0:87:27.40:0,27,2045 0/0:24,0:24:25.06:0,25,438 0/0:24,0:24:19.36:0,19,435 0/0:26,0:26:21.95:0,22,559 0/0:31,0:31:5.66:0,6,634 0/0:22,0:22:6.70:0,7,449 0/0:50,0:50:0.96:0,1,1025 0/1:45,0:45:20.63:21,0,943 0/0:23,0:23:1.73:3,0,483 0/0:28,0:28:19.68:0,20,502 0/0:26,0:26:39.17:0,39,620 0/0:55,1:56:43.73:0,44,1110 0/1:26,0:26:69.82:70,0,479 0/1:32,0:32:42.94:43,0,605 0/0:24,0:24:33.95:0,34,560 0/0:20,0:20:9.41:0,9,382 0/1:37,0:37:18.28:18,0,626 19 42848706 . C T 121.10 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.624;DP=638;Dels=0.00;FS=3.653;HRun=0;HaplotypeScore=0.7515;InbreedingCoeff=-0.0231;MQ=58.97;MQ0=0;MQRankSum=-0.143;QD=6.05;ReadPosRankSum=0.359 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,282 0/0:6,0:6:18.05:0,18,213 0/0:11,0:11:30.09:0,30,356 0/0:33,0:33:93.27:0,93,1089 0/0:44,0:44:99:0,129,1531 0/0:11,0:11:33.09:0,33,384 0/1:12,8:20:99:167,0,323 0/0:18,0:18:51.15:0,51,601 0/0:8,0:8:24.06:0,24,263 0/0:5,0:5:15.04:0,15,171 0/0:9,0:9:27.07:0,27,304 0/0:14,0:14:36.06:0,36,377 0/0:5,0:5:15.04:0,15,173 0/0:10,0:10:27.07:0,27,294 0/0:37,0:38:96.20:0,96,1045 0/0:11,0:11:33.05:0,33,343 0/0:14,0:14:39.09:0,39,424 0/0:6,0:6:15.04:0,15,170 0/0:20,0:20:54.12:0,54,593 0/0:27,0:27:75.18:0,75,823 0/0:9,0:9:21.06:0,21,250 0/0:11,0:11:30.03:0,30,320 0/0:31,0:31:93.23:0,93,1073 0/0:16,0:16:48.11:0,48,563 0/0:32,0:32:84.20:0,84,955 0/0:21,0:21:63.14:0,63,681 0/0:7,0:7:21.06:0,21,237 0/0:9,0:9:21.04:0,21,233 0/0:7,0:7:18.05:0,18,206 0/0:11,0:11:30.09:0,30,364 0/0:9,1:10:1.56:4,0,189 0/0:14,0:14:39.10:0,39,455 0/0:21,0:21:54.12:0,54,582 0/0:10,0:10:30.06:0,30,326 0/0:16,0:16:48.13:0,48,545 0/0:10,0:10:27.06:0,27,290 0/0:22,0:22:60.15:0,60,662 0/0:16,0:16:45.12:0,45,511 0/0:18,0:18:51.12:0,51,557 0/0:12,0:12:33.09:0,33,386 0/0:6,0:6:15.04:0,15,170 0/0:11,0:11:33.09:0,33,377 19 42854396 . T G 94.81 . AC=1;AF=0.012;AN=84;BaseQRankSum=-19.431;DP=2763;DS;Dels=0.00;FS=1436.213;HRun=2;HaplotypeScore=2.8398;InbreedingCoeff=-0.0139;MQ=59.00;MQ0=0;MQRankSum=0.650;QD=2.02;ReadPosRankSum=-18.460 GT:AD:DP:GQ:PL 0/0:25,8:34:48.25:0,48,789 0/0:50,10:60:99:0,137,1611 0/0:29,12:41:25.27:0,25,866 0/0:116,42:158:99:0,252,3806 0/0:130,36:166:99:0,287,4404 0/0:72,21:93:99:0,192,2341 0/0:67,13:80:99:0,151,2191 0/0:62,17:79:90.35:0,90,2072 0/0:39,11:50:80.28:0,80,1221 0/0:30,7:37:28.23:0,28,932 0/0:36,4:40:99:0,105,1223 0/0:32,9:41:95.23:0,95,1063 0/0:25,6:32:42.42:0,42,809 0/0:39,6:45:62.97:0,63,1217 0/0:100,30:130:74.01:0,74,2906 0/0:44,12:56:66:0,66,1274 0/0:34,8:42:45.07:0,45,1108 0/0:18,8:26:7.79:0,8,595 0/0:73,18:91:76.52:0,77,2074 0/0:103,24:127:99:0,260,3355 0/0:76,15:92:99:0,145,2243 0/0:53,7:60:99:0,133,1787 0/0:140,27:168:99:0,233,4746 0/0:60,17:77:99:0,137,1916 0/0:67,16:83:55.01:0,55,2161 0/0:67,13:81:99:0,189,2244 0/0:28,2:30:80.24:0,80,916 0/0:26,10:36:78.22:0,78,912 0/0:25,10:35:22.93:0,23,754 0/0:36,8:44:99:0,105,1195 0/0:29,5:34:28.18:0,28,861 0/0:86,25:111:99:0,215,2799 0/0:57,13:70:99:0,101,1842 0/0:38,5:43:52.22:0,52,1235 0/0:42,5:47:99:0,120,1435 0/1:32,15:47:99:141,0,855 0/0:64,16:80:61.61:0,62,1856 0/0:34,5:39:70.74:0,71,1135 0/0:36,14:50:89.19:0,89,986 0/0:34,8:42:90.22:0,90,1029 0/0:25,5:30:72.21:0,72,842 0/0:29,7:36:77.72:0,78,903 19 42855395 . A C 79.68 . AC=8;AF=0.100;AN=80;BaseQRankSum=-7.515;DP=264;Dels=0.00;FS=93.707;HRun=2;HaplotypeScore=0.1051;InbreedingCoeff=-0.1605;MQ=58.44;MQ0=0;MQRankSum=1.833;QD=1.66;ReadPosRankSum=-5.039 GT:AD:DP:GQ:PL 0/0:1,1:2:3.01:0,3,38 0/0:5,3:8:15.04:0,15,179 0/0:2,0:2:6.02:0,6,71 0/0:11,7:18:33.10:0,33,407 0/1:4,3:7:15.55:16,0,137 0/0:4,1:5:9.01:0,9,102 0/0:6,1:7:18.06:0,18,223 0/0:2,3:5:3.01:0,3,37 0/0:3,1:4:9.02:0,9,99 0/0:1,1:2:2.60:0,3,10 0/0:1,0:1:3.01:0,3,37 0/0:3,3:6:9.03:0,9,105 ./. 0/0:7,2:9:16.94:0,17,216 0/0:17,8:25:51.15:0,51,599 0/0:7,1:9:21.06:0,21,249 0/0:4,4:8:12.04:0,12,147 0/1:4,3:7:40.23:40,0,115 0/0:5,1:6:15.04:0,15,174 0/0:9,7:16:24.07:0,24,276 0/0:4,1:5:12.04:0,12,149 0/0:2,7:9:6.02:0,6,70 0/1:5,2:7:12.54:13,0,167 0/1:5,2:7:7.64:8,0,168 0/0:2,2:4:6.02:0,6,74 0/0:1,0:1:2.99:0,3,23 0/0:2,0:2:6.01:0,6,63 0/0:3,1:4:9.03:0,9,110 0/0:3,2:5:6.02:0,6,70 0/0:3,2:5:9.03:0,9,111 0/1:3,2:5:12.69:13,0,49 0/0:9,1:10:27.08:0,27,315 0/0:6,1:7:15.05:0,15,180 0/0:4,3:7:9.03:0,9,108 0/0:3,2:5:9.03:0,9,111 0/1:1,3:4:25.53:26,0,29 0/1:2,4:6:51.94:52,0,58 0/0:3,2:5:9.03:0,9,110 0/0:4,0:4:12.03:0,12,141 ./. 0/0:4,0:4:9.03:0,9,112 0/1:2,3:5:22.52:23,0,63 19 42855882 . T G 335.47 . AC=16;AF=0.190;AN=84;BaseQRankSum=-8.505;DP=343;Dels=0.00;FS=422.350;HRun=2;HaplotypeScore=0.2918;InbreedingCoeff=-0.2679;MQ=57.69;MQ0=0;MQRankSum=-0.580;QD=2.35;ReadPosRankSum=-10.026 GT:AD:DP:GQ:PL 0/1:5,3:8:45.66:46,0,131 0/0:3,1:4:8.52:0,9,82 0/0:8,2:10:5.39:0,5,271 0/1:8,1:9:9.36:9,0,229 0/0:11,1:12:32.13:0,32,380 0/0:6,0:6:15.05:0,15,188 0/0:4,1:5:11.63:0,12,123 0/0:4,1:5:11.63:0,12,125 0/0:5,0:5:15.04:0,15,171 0/0:4,1:5:7.90:0,8,90 0/1:7,3:10:68.20:68,0,209 0/0:8,1:9:19.30:0,19,226 0/1:3,1:4:13.66:14,0,97 0/0:2,1:3:6.02:0,6,72 0/1:9,5:14:99:101,0,275 0/0:7,1:8:21.05:0,21,243 0/0:6,0:6:18.06:0,18,219 0/1:5,1:6:18.93:19,0,152 0/0:13,1:14:37.66:0,38,441 0/1:14,4:18:12.18:12,0,402 0/0:9,4:13:24.44:0,24,261 0/0:4,0:4:12.04:0,12,139 0/0:11,2:13:32.52:0,33,357 0/0:3,1:4:9.03:0,9,113 0/0:4,0:4:12.03:0,12,138 0/0:9,3:12:1.83:3,0,281 0/0:4,2:6:12.04:0,12,148 0/1:3,2:5:41.26:41,0,93 0/1:5,2:7:8.84:9,0,99 0/0:10,2:12:3.48:0,3,334 0/1:2,2:4:24.41:24,0,65 0/1:9,5:14:43.28:43,0,288 0/1:7,3:10:6.52:7,0,233 0/0:8,1:9:21.54:0,22,257 0/1:11,3:14:30.53:31,0,343 0/1:3,2:5:13.66:14,0,98 0/0:8,2:10:23.66:0,24,268 0/0:8,3:11:23.28:0,23,259 0/1:9,2:11:25.18:25,0,295 0/0:6,0:6:18.06:0,18,220 0/1:2,2:4:22.52:23,0,66 0/0:3,1:4:9.03:0,9,108 19 42857179 . C T 137.38 . AC=2;AF=0.026;AN=78;BaseQRankSum=2.335;DP=159;Dels=0.00;FS=1.709;HRun=0;HaplotypeScore=0.2925;InbreedingCoeff=0.1198;MQ=56.60;MQ0=0;MQRankSum=0.416;QD=17.17;ReadPosRankSum=1.601 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.02:0,9,103 0/1:0,3:3:0.51:108,9,0 0/0:5,0:5:15.04:0,15,164 0/0:3,0:3:9.02:0,9,102 0/0:1,0:1:3.01:0,3,33 0/0:1,0:1:3:0,3,26 0/0:2,0:2:6.01:0,6,63 0/0:8,0:8:21.06:0,21,255 0/0:3,0:3:6.02:0,6,78 0/0:2,0:2:6.02:0,6,70 0/0:6,0:6:15.04:0,15,176 0/0:4,0:4:12.03:0,12,128 0/0:3,0:3:6.01:0,6,61 0/0:12,0:12:30.06:0,30,326 ./. ./. 0/0:4,0:4:12.03:0,12,141 0/0:12,0:12:27.07:0,27,299 0/0:10,0:10:24.06:0,24,277 0/0:3,0:3:9.01:0,9,88 0/0:2,0:2:6.02:0,6,66 0/0:5,0:5:15.05:0,15,187 0/0:2,0:2:6.02:0,6,67 0/0:1,0:1:3.01:0,3,34 ./. 0/0:7,0:7:21.05:0,21,228 0/0:8,0:8:24.06:0,24,264 0/0:1,0:1:3.01:0,3,32 0/0:3,0:3:9.02:0,9,93 0/0:2,0:2:6.02:0,6,67 0/0:9,0:9:24.06:0,24,261 0/1:2,3:5:55.08:97,0,55 0/0:4,0:4:12.03:0,12,140 0/0:2,0:2:6.02:0,6,72 0/0:3,0:3:6.01:0,6,61 0/0:4,0:4:3.01:0,3,31 0/0:4,0:4:9.02:0,9,101 0/0:1,0:1:3:0,3,29 0/0:4,0:4:6.01:0,6,60 0/0:4,0:4:12.02:0,12,115 0/0:2,0:2:6.01:0,6,65 19 42858748 . C T 5921.90 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.310;DP=9986;DS;Dels=0.00;FS=11.407;HRun=0;HaplotypeScore=3.6390;InbreedingCoeff=-0.0244;MQ=59.62;MQ0=0;MQRankSum=1.287;QD=12.96;ReadPosRankSum=0.143 GT:AD:DP:GQ:PL 0/0:247,0:247:99:0,680,8011 0/0:235,0:235:99:0,641,7480 0/0:244,1:245:99:0,619,7621 0/0:226,0:226:99:0,644,7846 0/0:228,0:228:99:0,632,8001 0/0:236,0:236:99:0,662,8256 0/0:241,0:241:99:0,647,8183 0/0:236,0:236:99:0,650,8161 0/0:240,0:240:99:0,653,7600 0/0:244,0:245:99:0,671,7787 0/0:244,0:245:99:0,665,7844 0/0:241,0:241:99:0,653,7616 0/0:246,0:246:99:0,641,7589 0/0:243,0:243:99:0,680,7957 0/0:249,0:250:99:0,701,7926 0/0:244,0:245:99:0,671,7876 0/0:236,0:236:99:0,629,7321 0/0:250,0:250:99:0,683,8007 0/0:225,0:225:99:0,626,7143 0/0:240,0:240:99:0,680,7718 0/0:230,0:230:99:0,626,7094 0/0:237,0:237:99:0,674,7787 0/0:229,0:229:99:0,656,8216 0/0:232,0:233:99:0,638,8013 0/0:237,0:237:99:0,653,8063 0/0:246,0:246:99:0,674,8512 0/0:221,0:221:99:0,599,6994 0/0:238,0:238:99:0,662,7622 0/0:236,0:236:99:0,608,7208 0/1:126,111:237:99:3081,0,3519 0/0:250,0:250:99:0,683,7963 0/0:230,0:230:99:0,632,7348 0/1:117,103:220:99:2841,0,3154 0/0:238,0:238:99:0,677,7841 0/0:240,0:241:99:0,662,7711 0/0:239,0:239:99:0,656,7728 0/0:235,0:236:99:0,638,7281 0/0:242,0:242:99:0,629,7407 0/0:244,0:244:99:0,689,7992 0/0:238,0:239:99:0,641,7382 0/0:234,0:235:99:0,641,7356 0/0:228,0:228:99:0,620,7297 19 42858793 . T C 4497.32 . AC=2;AF=0.024;AN=84;BaseQRankSum=-14.101;DP=7756;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=6.0302;InbreedingCoeff=-0.0244;MQ=59.53;MQ0=0;MQRankSum=-0.033;QD=12.81;ReadPosRankSum=-0.630 GT:AD:DP:GQ:PL 0/0:163,0:164:99:0,436,5249 0/0:138,0:138:99:0,364,4347 0/1:81,92:173:99:2160,0,2178 0/0:247,0:250:99:0,692,8332 0/0:250,0:250:99:0,713,8751 0/0:248,0:248:99:0,704,8734 0/0:236,0:239:99:0,659,8048 0/0:248,0:250:99:0,701,8544 0/0:157,0:157:99:0,442,5192 0/0:147,0:147:99:0,394,4735 0/0:148,0:149:99:0,409,4890 0/0:151,0:151:99:0,406,4821 0/0:137,1:139:99:0,369,4695 0/0:129,0:129:99:0,364,4344 0/0:243,0:243:99:0,644,7590 0/0:155,1:157:99:0,397,5037 0/0:140,0:141:99:0,409,4939 0/0:164,1:166:99:0,454,5365 0/0:241,0:241:99:0,674,8040 0/0:249,0:250:99:0,689,8176 0/0:245,0:246:99:0,653,7856 0/0:199,0:199:99:0,578,6785 0/0:250,0:250:99:0,716,8655 0/0:242,0:242:99:0,677,8192 0/0:249,0:250:99:0,698,8490 0/0:226,0:226:99:0,629,7592 0/0:134,0:135:99:0,373,4421 0/0:124,0:124:99:0,352,4162 0/0:154,0:154:99:0,442,5248 0/0:152,0:152:99:0,427,5112 0/0:156,0:156:99:0,415,5006 0/0:249,0:250:99:0,695,8397 0/1:83,94:178:99:2337,0,2290 0/0:146,0:147:99:0,418,5032 0/0:142,1:145:99:0,368,4744 0/0:170,0:171:99:0,475,5673 0/0:226,1:227:99:0,560,7008 0/0:134,0:134:99:0,376,4510 0/0:142,0:144:99:0,391,4568 0/0:160,0:160:99:0,454,5395 0/0:136,0:138:99:0,379,4501 0/0:144,0:146:99:0,394,4705 19 42866290 . G T 12.52 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.185;DP=605;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5668;InbreedingCoeff=-0.0165;MQ=58.90;MQ0=0;MQRankSum=0.331;QD=1.25;ReadPosRankSum=-0.134 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,287 0/0:13,0:13:39.12:0,39,493 0/0:15,0:15:42.12:0,42,525 0/0:33,0:33:93.29:0,93,1199 0/0:27,0:27:75.23:0,75,991 0/0:20,0:20:57.19:0,57,774 0/0:11,0:11:30.10:0,30,409 0/0:16,0:16:36.12:0,36,489 0/0:13,0:13:39.12:0,39,483 0/0:5,0:5:15.05:0,15,186 0/0:10,0:10:30.09:0,30,373 0/0:13,0:13:30.09:0,30,381 0/0:9,0:9:21.07:0,21,268 0/0:5,0:5:15.04:0,15,176 0/0:36,0:36:96.27:0,96,1175 0/0:14,0:14:42.13:0,42,531 0/0:16,0:16:48.15:0,48,585 0/0:9,0:9:27.09:0,27,348 0/0:20,1:21:23.19:0,23,663 0/0:24,0:24:69.22:0,69,866 0/0:27,0:27:75.23:0,75,941 0/0:18,0:18:48.16:0,48,626 0/0:36,0:36:96.31:0,96,1272 0/0:12,0:12:33.11:0,33,434 0/0:18,0:18:51.14:0,51,657 0/1:6,3:10:58.45:58,0,200 0/0:7,0:7:21.07:0,21,270 0/0:12,0:12:36.11:0,36,449 0/0:14,0:14:42.13:0,42,534 0/0:13,0:13:36.10:0,36,439 0/0:12,0:12:33.11:0,33,424 0/0:25,0:25:60.19:0,60,779 0/0:12,0:12:33.10:0,33,418 0/0:4,0:4:12.04:0,12,154 0/0:9,0:9:24.08:0,24,312 0/0:13,0:13:36.11:0,36,456 0/0:8,0:8:24.07:0,24,296 0/0:14,0:14:39.12:0,39,496 0/0:4,0:4:12.04:0,12,154 0/0:3,0:3:9.02:0,9,106 0/0:5,0:5:15.05:0,15,193 0/0:11,0:11:33.11:0,33,423 19 42906024 . G A 110.84 . AC=4;AF=0.057;AN=70;BaseQRankSum=2.299;DP=123;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;InbreedingCoeff=-0.1529;MQ=58.98;MQ0=0;MQRankSum=-1.024;QD=4.62;ReadPosRankSum=-0.509 GT:AD:DP:GQ:PL ./. 0/0:2,0:2:6.02:0,6,73 0/0:1,0:1:3:0,3,28 0/1:4,2:6:55.88:56,0,119 0/1:3,1:4:29.56:30,0,60 0/0:7,0:7:21.06:0,21,237 0/0:4,0:4:12.04:0,12,145 0/0:4,0:4:9.02:0,9,108 0/0:2,0:2:6.02:0,6,64 0/0:4,0:4:9.02:0,9,107 ./. 0/0:4,0:5:9.03:0,9,113 0/0:2,0:2:6.02:0,6,71 0/0:3,0:3:3.01:0,3,32 0/1:9,3:12:73.78:74,0,197 0/0:3,0:3:9.02:0,9,95 0/1:1,1:2:21.65:31,0,22 ./. 0/0:6,0:6:12.03:0,12,146 0/0:4,0:4:9:0,9,99 0/0:2,0:2:6.02:0,6,70 0/0:3,0:3:9.02:0,9,101 0/0:7,0:7:21.06:0,21,241 0/0:3,0:3:9.03:0,9,111 0/0:3,0:3:9.02:0,9,93 0/0:1,0:1:3:0,3,26 0/0:2,0:2:6.01:0,6,62 ./. 0/0:4,0:4:12.02:0,12,127 0/0:3,0:3:9.02:0,9,92 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:6.02:0,6,78 0/0:1,0:1:3:0,3,29 0/0:1,0:1:3.01:0,3,30 ./. ./. 0/0:4,0:4:9.02:0,9,88 0/0:2,0:2:6.01:0,6,59 0/0:1,0:1:3.01:0,3,33 ./. 0/0:1,0:1:3.01:0,3,32 0/0:4,0:4:12.03:0,12,125 19 42910416 . C T 185.39 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.176;DP=1047;Dels=0.00;FS=1.317;HRun=0;HaplotypeScore=1.1813;InbreedingCoeff=-0.0252;MQ=58.34;MQ0=0;MQRankSum=-0.767;QD=7.72;ReadPosRankSum=0.227 GT:AD:DP:GQ:PL 0/1:7,7:14:99:160,0,160 0/1:6,4:10:87.62:88,0,134 0/0:15,0:15:36.09:0,36,408 0/0:62,0:63:99:0,159,1817 0/0:76,0:76:99:0,198,2280 0/0:43,0:43:99:0,114,1320 0/0:49,0:49:99:0,138,1628 0/0:43,0:43:99:0,120,1381 0/0:10,0:10:21.06:0,21,248 0/0:8,0:8:21.06:0,21,240 0/0:8,0:8:21.07:0,21,263 0/0:11,0:11:27.06:0,27,305 0/0:15,0:15:36.09:0,36,385 0/0:19,0:19:51.09:0,51,552 0/0:41,0:42:99:0,105,1190 0/0:17,0:17:36.09:0,36,401 0/0:14,0:14:30.06:0,30,337 0/0:13,0:13:33.07:0,33,357 0/0:27,0:28:54.14:0,54,606 0/0:39,0:40:99:0,111,1249 0/0:26,0:27:69.14:0,69,738 0/0:23,0:23:63.14:0,63,690 0/0:69,0:69:99:0,183,2115 0/0:38,0:39:99:0,108,1265 0/0:51,0:51:99:0,141,1661 0/0:34,0:34:93.21:0,93,1037 0/0:16,0:16:36.08:0,36,415 0/0:8,0:8:18.04:0,18,192 0/0:19,0:19:36.07:0,36,394 0/0:14,0:14:39.10:0,39,432 0/0:16,0:16:39.09:0,39,438 0/0:34,0:35:96.22:0,96,1063 0/0:25,0:25:69.14:0,69,755 0/0:13,0:13:36.07:0,36,389 0/0:18,0:18:51.13:0,51,576 0/0:22,0:22:60.12:0,60,650 0/0:16,0:18:39.11:0,39,454 0/0:9,0:9:27.04:0,27,298 0/0:17,0:17:45.11:0,45,502 0/0:11,0:11:30.08:0,30,336 0/0:7,0:7:18.02:0,18,184 0/0:18,0:18:45.10:0,45,477 19 42910455 . G A 151.07 . 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C T 5923.30 . 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G A 5214.21 . 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C A 2407.04 . 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G T 23452.37 . 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G T 3534.09 . 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G A 5453.45 . 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C T 4768.17 . 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G C 2146.68 . 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G A 2453.48 . 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T C 182480.76 . 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G C 688.39 . 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T C 11954.26 . 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C T 28168.31 . 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A G 28969.76 . 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T A 6879.06 . 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C T 14959.50 . 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G A 11296.29 . 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G A 5740.70 . 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A T 508.65 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.760;DP=2980;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.8451;InbreedingCoeff=-0.0120;MQ=59.24;MQ0=0;MQRankSum=-0.593;QD=11.83;ReadPosRankSum=2.016 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,150,1801 0/0:67,0:67:99:0,187,2224 0/0:49,0:49:99:0,138,1657 0/0:134,0:134:99:0,370,4412 0/0:102,0:102:99:0,280,3363 0/0:83,0:83:99:0,226,2820 0/0:75,0:75:99:0,202,2417 0/0:85,0:85:99:0,226,2732 0/0:57,0:57:99:0,156,1870 0/0:42,0:42:99:0,111,1308 0/0:56,0:56:99:0,156,1881 0/0:50,0:50:99:0,138,1624 0/0:51,0:51:99:0,132,1599 0/0:59,0:59:99:0,156,1896 0/0:168,0:169:99:0,442,5294 0/0:64,0:64:99:0,181,2100 0/0:71,0:71:99:0,168,2078 0/0:60,0:60:99:0,166,2001 0/0:105,0:105:99:0,277,3332 0/0:115,0:116:99:0,319,3833 0/0:116,0:118:99:0,316,3819 0/0:72,0:73:99:0,199,2379 0/0:94,0:94:99:0,259,3130 0/0:53,0:53:99:0,135,1646 0/0:72,0:72:99:0,190,2271 0/0:50,0:50:99:0,135,1616 0/0:55,0:55:99:0,159,1869 0/0:58,0:59:99:0,168,2004 0/1:24,19:43:99:555,0,707 0/0:61,0:61:99:0,159,1886 0/0:51,0:51:99:0,150,1819 0/0:92,0:92:99:0,238,2901 0/0:94,0:94:99:0,256,3017 0/0:59,0:59:99:0,162,1951 0/0:58,0:58:99:0,153,1877 0/0:44,0:44:99:0,129,1513 0/0:92,0:92:99:0,244,2937 0/0:57,0:57:99:0,150,1801 0/0:52,0:52:99:0,153,1805 0/0:71,0:71:99:0,205,2419 0/0:36,0:36:99:0,102,1189 0/0:49,0:49:99:0,138,1669 19 43858066 . G A 886.53 . AC=2;AF=0.024;AN=84;BaseQRankSum=-7.462;DP=2541;Dels=0.00;FS=2.047;HRun=0;HaplotypeScore=3.8155;InbreedingCoeff=-0.0244;MQ=59.09;MQ0=0;MQRankSum=0.072;QD=9.96;ReadPosRankSum=-1.465 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,132,1643 0/0:43,0:43:99:0,120,1476 0/0:49,0:49:99:0,132,1641 0/0:120,0:121:99:0,340,4411 0/0:88,0:88:99:0,244,3151 0/0:76,0:77:99:0,208,2705 0/0:62,0:62:99:0,175,2274 0/0:63,1:64:99:0,143,2270 0/0:57,0:57:99:0,156,1934 0/0:33,0:33:84.23:0,84,1018 0/0:39,0:40:99:0,114,1434 0/0:40,0:40:99:0,111,1367 0/0:44,2:47:72.61:0,73,1368 0/0:46,0:46:99:0,129,1614 0/0:144,0:144:99:0,361,4523 0/1:28,25:53:99:632,0,802 0/0:56,0:56:99:0,147,1846 0/0:43,0:43:99:0,114,1411 0/0:85,0:86:99:0,229,2797 0/0:102,0:102:99:0,277,3426 0/0:109,0:110:99:0,298,3625 0/0:69,0:69:99:0,184,2253 0/0:85,0:85:99:0,241,3163 0/0:49,0:49:99:0,138,1793 0/0:68,0:68:99:0,190,2412 0/0:40,0:40:99:0,120,1507 0/0:36,0:36:99:0,108,1336 0/0:52,0:53:99:0,144,1773 0/1:23,13:36:99:317,0,701 0/0:44,0:44:99:0,120,1514 0/0:47,1:48:99:0,108,1664 0/0:93,0:93:99:0,241,3070 0/0:76,0:77:99:0,214,2626 0/0:43,0:43:99:0,120,1458 0/0:46,0:46:99:0,126,1537 0/0:42,0:42:99:0,114,1351 0/0:72,0:73:99:0,193,2346 0/0:43,0:43:99:0,123,1531 0/0:43,0:43:99:0,114,1419 0/0:69,0:69:99:0,196,2412 0/0:25,0:25:75.21:0,75,924 0/0:47,0:47:99:0,129,1599 19 43865692 . G A 588.56 . AC=16;AF=0.200;AN=80;BaseQRankSum=-5.812;DP=769;Dels=0.00;FS=57.073;HRun=0;HaplotypeScore=0.4297;InbreedingCoeff=-0.1972;MQ=14.19;MQ0=449;MQRankSum=-6.603;QD=1.74;ReadPosRankSum=-0.388 GT:AD:DP:GQ:PL 0/0:12,1:13:3:0,3,27 0/0:10,0:10:12.02:0,12,119 0/0:6,0:6:6:0,6,53 0/0:33,0:33:18.01:0,18,160 0/0:32,0:32:36.01:0,36,320 0/1:21,20:41:41.01:41,0,228 1/1:9,8:17:3:27,3,0 0/0:11,8:20:15:0,15,133 0/0:9,0:9:9.02:0,9,95 0/0:14,0:14:12.02:0,12,116 0/0:9,0:9:6.01:0,6,60 0/1:12,5:17:18.11:18,0,120 ./. 0/0:8,3:11:15:0,15,133 0/1:22,34:57:99:180,0,121 0/0:8,4:12:9:0,9,79 0/1:7,11:19:24.97:25,0,68 0/0:10,0:10:9:0,9,80 0/0:26,3:30:15.02:0,15,147 0/1:24,13:37:63.21:63,0,183 0/0:16,0:16:12.01:0,12,111 0/0:13,0:13:9:0,9,80 0/0:25,0:25:24.02:0,24,220 0/0:13,0:13:9:0,9,80 0/0:23,0:23:12:0,12,107 0/1:15,8:23:14.67:15,0,68 0/1:10,3:13:35.65:36,0,136 0/0:8,3:11:12.01:0,12,113 0/0:11,0:11:9.01:0,9,84 0/1:6,6:12:14.67:15,0,68 0/1:13,7:20:86.87:87,0,114 0/0:25,0:25:27.03:0,27,255 0/0:16,8:24:0.33:0,0,190 0/0:15,0:15:15.01:0,15,139 0/0:11,7:18:15.01:0,15,137 0/1:6,8:14:41.33:60,0,41 0/1:22,9:31:24.42:24,0,44 ./. 0/1:9,4:13:14.67:15,0,68 0/1:5,4:9:24.97:25,0,67 0/0:8,0:8:6.01:0,6,59 0/1:10,6:16:82.67:107,0,83 19 43967825 . A C 707.66 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.501;DP=1201;Dels=0.00;FS=5.639;HRun=0;HaplotypeScore=0.8881;InbreedingCoeff=-0.0121;MQ=58.93;MQ0=0;MQRankSum=-0.036;QD=13.10;ReadPosRankSum=1.660 GT:AD:DP:GQ:PL 0/0:23,0:24:60.18:0,60,707 0/0:15,0:15:45.11:0,45,523 0/0:26,0:26:78.22:0,78,904 0/0:54,0:55:99:0,150,1818 0/1:28,26:54:99:754,0,831 0/0:35,0:35:99:0,99,1191 0/0:48,0:48:99:0,126,1530 0/0:40,0:40:99:0,117,1388 0/0:25,0:25:66.17:0,66,784 0/0:12,0:12:36.11:0,36,424 0/0:21,0:21:60.18:0,60,729 0/0:15,0:15:33.10:0,33,412 0/0:17,0:17:45.13:0,45,544 0/0:19,0:19:51.16:0,51,631 0/0:67,1:68:99:0,168,1984 0/0:28,0:28:75.21:0,75,895 0/0:13,0:13:36.10:0,36,420 0/0:18,0:18:51.15:0,51,605 0/0:33,0:34:78.22:0,78,930 0/0:46,0:46:99:0,114,1378 0/0:51,0:52:99:0,135,1623 0/0:22,0:22:57.15:0,57,669 0/0:61,0:61:99:0,165,2021 0/0:33,0:33:93.26:0,93,1090 0/0:41,0:41:99:0,102,1253 0/0:32,0:32:90.25:0,90,1077 0/0:10,0:10:24.07:0,24,288 0/0:31,0:31:75.23:0,75,928 0/0:16,0:16:45.12:0,45,534 0/0:20,0:20:48.15:0,48,612 0/0:19,0:19:51.15:0,51,610 0/0:34,0:34:93.25:0,93,1115 0/0:29,0:29:78.21:0,78,906 0/0:14,0:14:42.13:0,42,503 0/0:17,0:17:48.15:0,48,577 0/0:25,0:25:75.21:0,75,864 0/0:35,0:35:93.25:0,93,1114 0/0:18,0:18:54.15:0,54,631 0/0:21,0:21:57.17:0,57,699 0/0:18,0:18:54.16:0,54,641 0/0:18,1:19:42.13:0,42,520 0/0:21,0:21:60.15:0,60,710 19 43969667 . C T 490.25 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.255;DP=3303;DS;Dels=0.00;FS=1.782;HRun=0;HaplotypeScore=2.9328;InbreedingCoeff=-0.0120;MQ=58.83;MQ0=0;MQRankSum=0.301;QD=9.80;ReadPosRankSum=0.865 GT:AD:DP:GQ:PL 0/0:51,0:52:99:0,126,1533 0/0:48,0:48:99:0,129,1567 0/1:24,26:50:99:536,0,678 0/0:249,0:250:99:0,590,7789 0/0:195,0:196:99:0,506,6751 0/0:173,0:173:99:0,442,5781 0/0:139,0:139:99:0,337,4432 0/0:154,0:154:99:0,367,4867 0/0:41,0:41:99:0,105,1352 0/0:34,0:34:84.23:0,84,1008 0/0:29,0:29:66.19:0,66,808 0/0:33,0:33:84.22:0,84,1017 0/0:29,0:29:84.26:0,84,1039 0/0:47,0:47:99:0,111,1396 0/0:161,1:164:99:0,348,4533 0/0:42,0:42:99:0,117,1441 0/0:34,0:34:84.27:0,84,1066 0/0:30,0:30:72.22:0,72,891 0/0:81,0:81:99:0,196,2378 0/0:103,0:103:99:0,250,3217 0/0:77,0:77:99:0,172,2139 0/0:64,0:65:99:0,165,2067 0/0:246,2:249:99:0,553,7804 0/0:150,0:150:99:0,364,4850 0/0:141,1:144:99:0,358,4763 0/0:149,0:149:99:0,331,4441 0/0:34,0:34:93.29:0,93,1158 0/0:37,0:37:96.29:0,96,1190 0/0:33,0:33:81.25:0,81,1015 0/0:49,0:49:99:0,123,1511 0/0:25,0:25:63.20:0,63,791 0/0:91,0:91:99:0,217,2748 0/0:64,0:66:99:0,162,2011 0/0:40,0:40:99:0,105,1328 0/0:47,0:48:99:0,123,1509 0/0:36,0:36:84.23:0,84,1038 0/0:87,0:90:99:0,181,2259 0/0:36,0:36:93.28:0,93,1155 0/0:45,0:45:99:0,120,1511 0/0:31,0:31:72.19:0,72,849 0/0:30,0:31:75.23:0,75,941 0/0:48,0:48:99:0,129,1586 19 44001345 . C T 7852.71 . 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T C 782.16 . 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C T 221.42 . 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G A 17.54 . 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T C 4659.74 . 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G A 4288.08 . 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G C 565.65 . 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T C 16604 . 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C G 7189.22 . 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A G 40480.25 . 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A G 167072.23 . 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C T 583.11 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.822;DP=2698;Dels=0.00;FS=0.709;HRun=0;HaplotypeScore=1.0127;InbreedingCoeff=-0.0120;MQ=59.19;MQ0=0;MQRankSum=-0.186;QD=8.97;ReadPosRankSum=0.312 GT:AD:DP:GQ:PL 0/0:61,0:61:99:0,153,1803 0/0:47,0:47:99:0,132,1545 0/0:49,0:49:99:0,135,1541 0/0:108,0:108:99:0,259,3323 0/0:79,0:79:99:0,196,2533 0/0:90,0:90:99:0,226,2863 0/0:71,0:71:99:0,162,2110 0/0:73,0:73:99:0,184,2340 0/0:51,0:51:99:0,132,1585 0/0:47,0:47:99:0,129,1501 0/0:39,0:39:99:0,105,1235 0/0:49,0:49:99:0,129,1532 0/0:46,0:46:99:0,126,1472 0/0:50,0:50:99:0,129,1503 0/0:180,0:180:99:0,442,5403 0/0:51,0:51:99:0,138,1639 0/0:41,0:41:99:0,120,1370 0/0:43,0:43:99:0,117,1371 0/0:87,0:87:99:0,202,2438 0/0:98,0:98:99:0,235,2863 0/0:103,0:103:99:0,271,3214 0/0:47,0:47:99:0,108,1329 0/0:129,0:129:99:0,331,4284 0/0:49,0:49:99:0,117,1507 0/0:75,0:76:99:0,187,2447 0/1:37,28:65:99:629,0,1050 0/0:39,0:39:99:0,99,1193 0/0:50,0:50:99:0,141,1606 0/0:46,0:46:99:0,126,1455 0/0:52,0:52:99:0,129,1583 0/0:41,0:41:99:0,108,1246 0/0:113,0:113:99:0,301,3534 0/0:63,0:63:99:0,171,2027 0/0:35,0:36:99:0,102,1169 0/0:52,0:52:99:0,144,1698 0/0:57,0:57:99:0,147,1735 0/0:96,0:96:99:0,238,2882 0/0:59,0:59:99:0,156,1853 0/0:42,0:42:99:0,108,1294 0/0:45,0:45:99:0,123,1457 0/0:34,0:34:90.26:0,90,1079 0/0:44,0:44:99:0,123,1408 19 45262848 . C A 4798.44 . 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G A 7703.60 . AC=8;AF=0.095;AN=84;BaseQRankSum=-4.220;DP=2250;Dels=0.00;FS=9.419;HRun=0;HaplotypeScore=1.8034;InbreedingCoeff=-0.1053;MQ=58.92;MQ0=0;MQRankSum=0.829;QD=15.13;ReadPosRankSum=1.357 GT:AD:DP:GQ:PL 0/0:18,0:18:48.13:0,48,553 0/1:13,31:44:99:948,0,305 0/1:12,15:27:99:360,0,315 0/0:112,1:113:99:0,285,3976 0/0:144,0:144:99:0,421,5436 0/1:37,43:80:99:1181,0,1176 0/1:30,38:68:99:1056,0,870 0/0:84,0:84:99:0,229,2922 0/0:38,0:38:99:0,105,1249 0/0:27,0:27:72.18:0,72,839 0/0:34,0:34:96.27:0,96,1129 0/0:30,0:30:84.22:0,84,946 0/0:31,0:32:87.25:0,87,1042 0/0:48,0:48:99:0,141,1638 0/1:71,71:142:99:1930,0,1850 0/0:53,0:53:99:0,153,1803 0/1:14,27:41:99:770,0,359 0/1:20,17:37:99:481,0,474 0/1:32,38:70:99:976,0,871 0/0:70,0:70:99:0,177,2113 0/0:66,0:67:99:0,181,2173 0/0:57,0:57:99:0,156,1852 0/0:137,0:137:99:0,379,4927 0/0:51,0:51:99:0,141,1826 0/0:78,0:78:99:0,220,2799 0/0:61,0:61:99:0,156,2025 0/0:26,0:26:69.21:0,69,839 0/0:32,0:32:93.26:0,93,1093 0/0:28,0:28:75.22:0,75,904 0/0:39,0:39:99:0,108,1269 0/0:30,0:30:90.26:0,90,1056 0/0:55,0:55:99:0,138,1659 0/0:41,0:41:99:0,105,1265 0/0:31,0:31:87.26:0,87,1053 0/0:45,0:45:99:0,108,1320 0/0:35,0:35:99:0,99,1164 0/0:60,0:60:99:0,168,1972 0/0:39,0:40:99:0,108,1286 0/0:39,0:39:99:0,114,1341 0/0:36,0:36:96.29:0,96,1174 0/0:32,0:32:93.26:0,93,1099 0/0:30,0:30:84.25:0,84,999 19 45322891 . C T 862.80 . 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A T 455.14 . AC=4;AF=0.048;AN=84;BaseQRankSum=-0.461;DP=691;Dels=0.00;FS=16.061;HRun=0;HaplotypeScore=1.1746;InbreedingCoeff=-0.0528;MQ=57.95;MQ0=0;MQRankSum=1.985;QD=10.11;ReadPosRankSum=1.633 GT:AD:DP:GQ:PL 0/0:7,0:7:21.06:0,21,250 0/0:11,0:11:33.10:0,33,407 0/0:11,0:11:30.09:0,30,362 0/0:48,0:48:99:0,132,1663 0/0:28,0:28:69.22:0,69,888 0/0:28,0:28:75.23:0,75,956 0/0:32,0:32:78.24:0,78,999 0/0:23,0:23:51.15:0,51,647 0/0:10,0:10:27.08:0,27,319 0/0:4,0:4:12.04:0,12,142 0/0:7,0:7:21.06:0,21,251 0/0:11,0:11:30.09:0,30,372 0/0:8,0:8:24.07:0,24,288 0/0:17,0:17:45.13:0,45,550 0/0:37,0:37:87.25:0,87,1053 0/0:13,0:13:30.09:0,30,352 0/0:10,0:10:27.08:0,27,333 0/0:9,0:9:24.08:0,24,296 0/0:13,0:14:33.10:0,33,404 0/0:26,0:27:63.17:0,63,776 0/0:22,0:22:60.13:0,60,682 0/0:23,0:23:51.15:0,51,621 0/0:48,0:48:99:0,123,1552 0/0:20,0:20:54.17:0,54,684 0/0:33,0:33:87.28:0,87,1110 0/0:24,0:24:60.16:0,60,746 0/0:10,0:10:24.08:0,24,302 0/0:4,0:4:12.04:0,12,147 0/0:6,0:6:15.04:0,15,174 0/0:11,0:11:30.09:0,30,372 0/0:18,0:18:48.14:0,48,586 0/0:20,0:20:51.16:0,51,637 0/0:14,0:14:36.11:0,36,438 0/0:7,0:7:21.07:0,21,259 0/0:6,0:6:15.04:0,15,174 0/1:7,5:12:99:119,0,165 0/0:12,0:12:36.08:0,36,419 0/0:8,0:8:21.07:0,21,262 0/0:5,0:5:15.05:0,15,188 0/1:6,8:14:99:247,0,170 0/1:9,1:10:12.91:13,0,218 0/1:4,5:9:99:161,0,121 19 45397229 . G A 7306.71 . 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T G 92.54 . AC=6;AF=0.071;AN=84;BaseQRankSum=-24.682;DP=2663;Dels=0.00;FS=515.572;HRun=2;HaplotypeScore=2.4045;InbreedingCoeff=-0.1049;MQ=54.14;MQ0=93;MQRankSum=-1.402;QD=0.29;ReadPosRankSum=-12.573 GT:AD:DP:GQ:PL 0/0:26,11:38:30.80:0,31,740 0/1:24,19:45:14.74:15,0,634 0/1:33,16:49:20.16:20,0,875 0/0:77,63:141:99:0,103,2108 0/0:76,58:134:99:0,134,2253 0/0:42,31:73:10.54:0,11,936 0/0:43,27:70:63.89:0,64,1199 0/0:58,25:83:99:0,141,1623 0/0:34,12:46:83.93:0,84,926 0/1:31,22:53:51.75:52,0,835 0/0:32,11:44:60.75:0,61,1001 0/0:32,15:48:70.52:0,71,983 0/0:18,11:29:24.42:0,24,476 0/0:29,12:41:48.55:0,49,832 0/0:90,49:139:2.09:0,2,2495 0/0:34,9:43:73.53:0,74,1065 0/0:38,21:59:11.55:0,12,1044 0/0:25,11:36:7.83:0,8,596 0/1:64,22:86:79.29:79,0,1590 0/0:98,39:137:99:0,174,2650 0/0:52,32:84:26.05:0,26,1278 0/0:50,25:76:84.09:0,84,1446 0/0:64,33:98:52.62:0,53,1720 0/0:55,20:75:88.18:0,88,1578 0/0:51,28:79:46.35:0,46,1240 0/0:46,27:75:74.48:0,74,1140 0/0:19,8:27:21:0,21,576 0/0:32,10:43:50.74:0,51,858 0/0:29,15:44:78.22:0,78,908 0/0:26,10:36:43.60:0,44,768 0/0:28,13:42:39.55:0,40,780 0/0:59,28:88:99:0,132,1729 0/0:42,10:53:82.99:0,83,1268 0/0:34,15:49:47.51:0,48,815 0/0:27,12:39:38.59:0,39,742 0/1:27,15:42:7.50:8,0,747 0/0:57,35:92:1.43:4,0,1451 0/0:34,19:53:58.52:0,59,868 0/0:32,11:43:0.98:6,0,834 0/0:36,12:48:81.06:0,81,1209 0/0:28,15:44:73.47:0,73,835 0/1:25,14:39:14.75:15,0,620 19 45397307 . C T 178.87 . 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T C 7057.47 . 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T C 47061.30 . 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C T 1671.53 . 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C T 941.24 . 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A AC 10.40 . 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GTGAAGT G 1261.43 . 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T G 538.73 . AC=10;AF=0.119;AN=84;BaseQRankSum=-29.784;DP=4952;DS;Dels=0.01;FS=3200.000;HRun=2;HaplotypeScore=11.1349;InbreedingCoeff=-0.1548;MQ=57.06;MQ0=0;MQRankSum=12.197;QD=0.54;ReadPosRankSum=-29.894 GT:AD:DP:GQ:PL 0/1:71,26:97:48.78:49,0,2230 0/0:57,16:73:24.70:0,25,1777 0/1:68,17:87:17.87:18,0,2076 0/0:132,38:170:12:0,12,4170 0/0:136,8:144:99:0,383,4880 0/0:111,26:137:99:0,183,3599 0/0:103,31:135:99:0,193,3290 0/0:108,29:137:99:0,100,3449 0/1:75,28:104:26.96:27,0,2254 0/1:69,30:99:99:205,0,2077 0/0:65,15:81:99:0,170,2276 0/1:75,24:99:29.47:29,0,2292 0/0:64,16:81:99:0,104,2137 0/1:59,26:85:65.79:66,0,1804 0/0:184,39:224:99:0,332,6156 0/0:80,26:106:36.61:0,37,2535 0/1:66,28:95:46.17:46,0,1985 0/0:83,22:105:87.16:0,87,2683 0/0:141,37:178:99:0,258,4491 0/0:152,37:189:99:0,215,4753 0/0:133,31:164:99:0,141,4116 0/0:113,33:146:99:0,161,3520 0/0:130,41:172:99:0,127,4176 0/0:64,28:93:57.81:0,58,2019 0/0:97,26:123:78.31:0,78,2924 0/0:111,28:139:77.10:0,77,3338 0/0:59,15:74:29.20:0,29,1721 0/0:68,18:87:99:0,136,2231 0/0:86,26:114:83.70:0,84,2703 0/0:71,20:91:99:0,116,2229 0/1:66,24:90:9.72:10,0,1917 0/0:129,36:165:99:0,195,4204 0/0:116,25:141:99:0,138,3668 0/0:68,19:87:47.37:0,47,2213 0/0:70,24:94:2.94:0,0,2141 0/0:73,17:90:36.54:0,37,2348 0/1:113,29:143:33.58:34,0,3409 0/0:73,25:98:31.43:0,31,2253 0/1:71,33:104:99:184,0,2199 0/0:73,25:98:77.81:0,78,2337 0/0:53,13:66:0.94:6,0,1676 0/0:80,19:101:73.85:0,74,2518 19 45716364 . C T 42.90 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.687;DP=309;Dels=0.00;FS=2.453;HRun=0;HaplotypeScore=0.2530;InbreedingCoeff=-0.0342;MQ=58.62;MQ0=0;MQRankSum=-0.433;QD=7.15;ReadPosRankSum=0.103 GT:AD:DP:GQ:PL 0/0:3,0:4:9.03:0,9,112 0/0:12,0:12:36.10:0,36,411 0/0:4,0:4:9.02:0,9,103 0/0:16,0:16:48.13:0,48,589 0/0:6,0:6:15.04:0,15,175 0/0:16,0:16:42.13:0,42,531 0/0:4,0:4:12.03:0,12,149 0/0:7,0:7:18.06:0,18,249 0/0:10,0:10:30.08:0,30,355 0/1:2,3:6:57.19:89,0,57 0/0:4,0:4:9.03:0,9,105 0/0:6,0:7:15.05:0,15,194 0/0:5,0:5:12.02:0,12,124 0/0:7,0:7:21.01:0,21,222 0/0:16,0:16:45.10:0,45,531 0/0:7,0:7:18.05:0,18,217 0/0:9,0:9:21.03:0,21,236 0/0:8,0:8:21.05:0,21,240 0/0:9,0:10:24.06:0,24,276 0/0:5,0:5:12.03:0,12,131 0/0:6,0:6:18.05:0,18,208 0/0:7,0:7:21.04:0,21,251 0/0:11,0:11:30.08:0,30,368 0/0:6,0:6:18.06:0,18,233 0/0:11,0:11:27.07:0,27,329 0/0:8,0:8:21.06:0,21,263 0/0:3,0:3:9.02:0,9,101 0/0:8,0:8:21.03:0,21,228 0/0:3,0:3:9.02:0,9,99 0/0:2,0:2:3.01:0,3,32 0/0:4,0:4:12.03:0,12,130 0/0:6,0:6:18.04:0,18,205 0/0:11,0:11:30.05:0,30,333 0/0:9,0:9:24.07:0,24,281 0/0:5,0:6:9.03:0,9,116 0/0:10,0:10:30.09:0,30,368 0/0:11,0:11:30.09:0,30,356 0/0:3,0:3:9.03:0,9,108 0/0:6,0:6:18.05:0,18,212 0/0:5,0:5:15.04:0,15,172 0/0:7,0:8:21.05:0,21,240 0/0:2,0:2:6.02:0,6,77 19 45774937 . T TC 177.63 . 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T C 256.59 . AC=7;AF=0.083;AN=84;BaseQRankSum=-14.952;DP=2609;Dels=0.00;FS=1406.123;HRun=3;HaplotypeScore=2.0882;InbreedingCoeff=-0.1038;MQ=58.86;MQ0=0;MQRankSum=1.877;QD=0.97;ReadPosRankSum=-17.338 GT:AD:DP:GQ:PL 0/0:33,4:37:93.28:0,93,1124 0/0:29,8:37:84.26:0,84,1019 0/0:29,14:43:46.50:0,46,827 0/0:93,56:149:0.57:0,1,2704 0/0:73,53:128:16.09:0,16,2241 0/0:68,33:101:99:0,103,2186 0/0:59,37:97:95.81:0,96,1987 0/0:64,29:93:99:0,183,2222 0/0:31,11:42:24.47:0,24,903 0/1:27,10:37:19.57:20,0,727 0/0:29,8:37:46.14:0,46,881 0/0:35,11:46:41.31:0,41,1073 0/0:24,9:33:61.43:0,61,725 0/0:42,16:58:99:0,123,1470 0/0:89,24:117:99:0,172,2846 0/1:24,15:39:17.19:17,0,770 0/0:36,7:44:57.15:0,57,1259 0/1:18,15:33:65.79:66,0,545 0/0:51,15:66:80.40:0,80,1528 0/0:62,12:74:99:0,146,2030 0/0:58,18:77:86.08:0,86,1878 0/0:47,18:65:60.95:0,61,1475 0/0:93,60:153:83.03:0,83,2859 0/0:43,34:77:17.83:0,18,1264 0/0:52,39:91:80.78:0,81,1660 0/0:42,25:67:44.05:0,44,1272 0/1:28,6:34:18.03:18,0,852 0/1:30,12:42:16.37:16,0,845 0/0:27,9:36:43.65:0,44,806 0/0:33,15:48:0.83:0,1,1054 0/1:20,17:37:99:173,0,578 0/0:70,14:84:99:0,131,2261 0/0:40,16:56:80.84:0,81,1323 0/0:30,10:40:34.13:0,34,1007 0/1:31,12:43:57.09:57,0,963 0/0:38,13:52:40.57:0,41,1163 0/0:62,19:82:99:0,109,2051 0/0:32,9:41:93.20:0,93,1093 0/0:29,13:43:52.89:0,53,965 0/0:30,9:39:49.01:0,49,955 0/0:31,7:39:49.66:0,50,871 0/0:40,12:52:85.08:0,85,1358 19 45797665 . C T 349.37 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.426;DP=1650;Dels=0.00;FS=3.791;HRun=0;HaplotypeScore=0.9809;InbreedingCoeff=-0.0120;MQ=59.09;MQ0=0;MQRankSum=0.140;QD=10.28;ReadPosRankSum=-1.717 GT:AD:DP:GQ:PL 0/0:28,0:28:81.17:0,81,888 0/0:52,0:52:99:0,135,1555 0/0:26,0:26:69.19:0,69,815 0/0:92,0:92:99:0,214,2741 0/0:49,0:49:99:0,120,1478 0/0:58,0:58:99:0,141,1771 0/0:50,0:50:99:0,132,1591 0/0:38,0:38:99:0,102,1235 0/0:30,0:30:78.21:0,78,910 0/0:24,0:24:69.20:0,69,811 0/0:23,0:23:57.15:0,57,657 0/0:28,0:28:75.19:0,75,863 0/0:24,0:24:63.18:0,63,747 0/0:34,0:34:84.20:0,84,975 0/0:76,0:76:99:0,183,2169 0/0:24,0:24:63.17:0,63,742 0/1:19,15:34:99:396,0,508 0/0:29,0:29:78.15:0,78,865 0/0:45,0:46:99:0,117,1361 0/0:40,0:40:90.23:0,90,1076 0/0:39,0:40:99:0,99,1151 0/0:45,0:45:99:0,120,1371 0/0:80,0:80:99:0,187,2297 0/0:44,0:44:96.25:0,96,1205 0/0:42,0:42:99:0,99,1227 0/0:30,0:30:75.22:0,75,952 0/0:26,0:26:63.15:0,63,716 0/0:32,0:32:90.20:0,90,997 0/0:34,0:34:84.22:0,84,962 0/0:26,0:26:69.15:0,69,779 0/0:30,0:30:81.21:0,81,946 0/0:48,0:48:99:0,120,1425 0/0:35,0:35:84.22:0,84,977 0/0:33,0:33:90.23:0,90,1040 0/0:26,0:26:75.17:0,75,826 0/0:44,0:44:96.24:0,96,1127 0/0:49,0:53:99:0,132,1530 0/0:39,0:39:99:0,114,1265 0/0:29,0:29:75.20:0,75,869 0/0:35,0:35:87.23:0,87,1016 0/0:31,0:31:78.21:0,78,884 0/0:43,0:43:99:0,117,1354 19 45815033 . G T 1957.61 . AC=15;AF=0.179;AN=84;BaseQRankSum=8.393;DP=429;Dels=0.00;FS=5.629;HRun=0;HaplotypeScore=0.3148;InbreedingCoeff=-0.0522;MQ=58.73;MQ0=0;MQRankSum=0.519;QD=13.88;ReadPosRankSum=0.671 GT:AD:DP:GQ:PL 0/0:15,0:15:45.10:0,45,479 0/1:3,1:4:13.66:14,0,93 0/1:6,8:14:99:250,0,144 0/0:7,0:7:18.05:0,18,220 0/0:12,0:12:33.10:0,33,400 0/1:1,4:5:17.46:122,0,17 1/1:0,5:5:15.05:192,15,0 0/0:3,0:3:9.03:0,9,118 0/1:6,4:10:92.39:127,0,92 0/0:9,0:9:24.07:0,24,273 0/1:2,8:10:34.91:272,0,35 0/1:7,4:11:90.50:127,0,91 0/1:7,1:8:13.73:14,0,210 0/0:7,0:7:21.03:0,21,210 0/1:16,16:32:99:400,0,372 0/0:13,0:13:36.07:0,36,394 0/1:1,8:9:10.72:256,0,11 0/0:10,0:10:27.07:0,27,304 0/0:15,0:15:45.09:0,45,463 0/0:23,0:23:66.14:0,66,691 0/0:16,0:16:48.12:0,48,514 0/0:10,0:10:27.07:0,27,300 0/0:9,0:9:27.06:0,27,303 0/0:7,0:7:21.06:0,21,243 0/0:7,0:7:21.06:0,21,240 0/0:4,0:4:12.04:0,12,153 0/0:5,0:5:15.03:0,15,156 0/0:15,0:15:33.09:0,33,370 0/0:8,0:8:21.06:0,21,228 0/0:14,0:14:42.11:0,42,458 0/0:10,0:10:30.08:0,30,328 0/0:12,0:12:33.08:0,33,371 0/0:13,0:13:36.09:0,36,384 0/1:6,3:9:81.96:82,0,161 0/0:5,0:5:15.04:0,15,164 0/1:6,3:9:85.49:85,0,180 0/0:13,0:13:30.06:0,30,327 0/0:8,0:8:24.07:0,24,270 0/0:7,0:7:18.05:0,18,199 0/0:11,0:11:33.09:0,33,374 0/1:3,2:5:56.19:56,0,82 0/1:6,4:10:94.30:123,0,94 19 45818835 . A G 24327.29 . 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T G 68019.99 . 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G A 23402.33 . 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C T 429.45 . 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G A 1805.62 . 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G A 1873.56 . 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T C 2283.79 . 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C T 9074.60 . 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G A 8684.76 . 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T C 12019.72 . AC=16;AF=0.190;AN=84;BaseQRankSum=11.680;DP=2868;Dels=0.00;FS=21.291;HRun=1;HaplotypeScore=2.5756;InbreedingCoeff=0.0735;MQ=59.25;MQ0=0;MQRankSum=-0.467;QD=15.27;ReadPosRankSum=-1.294 GT:AD:DP:GQ:PL 0/1:32,27:59:99:699,0,949 0/0:41,0:41:99:0,114,1347 0/0:48,0:48:99:0,141,1652 0/0:147,0:147:99:0,400,4799 0/0:126,0:126:99:0,355,4279 0/0:84,0:84:99:0,235,2897 0/0:82,0:82:99:0,241,2895 0/0:100,0:100:99:0,280,3369 0/0:45,0:45:99:0,120,1432 0/0:46,0:46:99:0,132,1581 0/1:29,23:52:99:644,0,821 0/1:19,20:39:99:582,0,499 0/1:19,17:36:99:536,0,530 0/0:57,0:57:99:0,156,1877 0/0:181,0:181:99:0,505,5921 0/1:30,24:54:99:649,0,858 0/0:44,0:44:99:0,123,1486 0/0:55,0:55:99:0,165,1943 0/0:83,0:84:99:0,235,2827 0/0:87,0:87:99:0,241,2874 0/0:85,0:85:99:0,253,3024 0/0:55,1:56:99:0,122,1761 0/0:122,0:122:99:0,328,3970 0/0:73,3:76:99:0,171,2456 0/0:106,1:107:99:0,267,3565 0/0:73,0:73:99:0,202,2415 0/0:46,0:46:99:0,135,1603 0/0:43,1:44:92.38:0,92,1431 0/0:41,0:41:99:0,120,1445 0/0:49,0:49:99:0,144,1730 0/0:45,0:45:99:0,129,1548 0/1:54,35:89:99:1006,0,1504 0/1:41,33:74:99:897,0,1184 0/1:26,23:49:99:697,0,752 0/0:58,0:58:99:0,162,1981 1/1:0,48:48:99:1744,141,0 0/1:54,29:84:99:754,0,1536 1/1:1,57:58:99:1889,127,0 0/1:33,24:57:99:741,0,854 0/1:21,22:43:99:670,0,610 0/1:26,18:44:99:512,0,719 0/0:52,0:52:99:0,144,1743 19 46196127 . C G 10.65 . AC=3;AF=0.050;AN=60;BaseQRankSum=-2.528;DP=80;Dels=0.00;FS=22.488;HRun=2;HaplotypeScore=0.0859;InbreedingCoeff=-0.0450;MQ=57.64;MQ0=0;MQRankSum=-0.176;QD=1.77;ReadPosRankSum=-1.966 GT:AD:DP:GQ:PL ./. 0/0:2,0:2:6.01:0,6,64 0/0:1,1:2:3.01:0,3,39 0/0:4,0:4:9.03:0,9,118 0/0:4,0:4:9.03:0,9,125 0/0:2,0:2:6.02:0,6,82 ./. 0/0:2,0:2:6.02:0,6,84 0/0:1,0:1:3.01:0,3,33 0/0:2,1:3:6.02:0,6,76 0/0:1,0:1:3.01:0,3,37 ./. 0/0:1,1:2:3.01:0,3,39 0/0:1,0:1:3.01:0,3,39 0/0:3,1:4:3.01:0,3,38 ./. ./. 0/0:1,0:1:3.01:0,3,36 0/0:2,1:3:3:0,3,25 0/0:6,0:6:18.06:0,18,226 ./. 0/0:4,1:5:12.04:0,12,148 ./. 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,41 ./. ./. 0/0:1,0:1:3.01:0,3,38 0/1:2,1:3:23.47:23,0,69 0/0:3,0:3:9.02:0,9,97 0/0:2,0:2:3.01:0,3,39 ./. 0/0:3,0:3:9.03:0,9,106 0/0:2,0:2:3.01:0,3,37 0/1:1,1:2:23.61:24,0,33 ./. 0/0:2,1:3:6.02:0,6,72 0/0:1,0:1:3.01:0,3,36 ./. 0/0:3,0:3:9.03:0,9,115 0/1:0,1:1:1.76:32,3,0 0/0:2,1:3:6.02:0,6,75 19 46275976 . G C 3761.62 . AC=6;AF=0.071;AN=84;BaseQRankSum=7.388;DP=1311;Dels=0.00;FS=14.565;HRun=0;HaplotypeScore=0.7534;InbreedingCoeff=0.2820;MQ=59.05;MQ0=0;MQRankSum=-1.687;QD=18.71;ReadPosRankSum=-0.974 GT:AD:DP:GQ:PL 0/0:20,0:20:60.18:0,60,727 0/0:22,0:22:57.17:0,57,701 0/0:20,0:20:54.16:0,54,672 0/1:51,32:83:99:1011,0,1577 0/0:68,0:68:99:0,184,2426 0/0:36,0:36:99:0,102,1349 0/0:34,0:34:96.31:0,96,1280 0/0:46,0:46:99:0,129,1667 0/0:27,0:27:78.24:0,78,960 0/0:12,0:12:36.11:0,36,427 0/0:22,0:22:60.15:0,60,734 0/0:18,0:18:48.14:0,48,584 0/0:14,0:14:39.11:0,39,467 0/0:22,0:22:60.19:0,60,748 0/0:86,0:86:99:0,244,3018 0/0:20,0:20:57.17:0,57,699 0/0:21,0:21:57.17:0,57,683 0/0:18,0:18:51.16:0,51,638 0/0:44,0:45:99:0,114,1443 0/0:37,0:37:96.30:0,96,1212 0/0:45,0:45:99:0,120,1481 0/0:35,0:35:96.25:0,96,1151 1/1:0,49:49:99:1804,135,0 0/0:36,0:36:99:0,99,1328 0/0:48,0:48:99:0,138,1838 0/0:50,0:50:99:0,138,1847 0/0:19,0:19:57.18:0,57,702 0/0:18,0:18:51.13:0,51,596 0/0:28,0:28:75.23:0,75,937 0/1:10,8:18:99:253,0,291 0/0:13,0:13:36.11:0,36,449 0/1:19,18:37:99:463,0,512 0/1:7,7:14:99:231,0,193 0/0:20,0:20:54.16:0,54,660 0/0:16,0:16:45.14:0,45,565 0/0:30,0:30:81.24:0,81,997 0/0:45,0:45:99:0,120,1471 0/0:22,0:22:60.19:0,60,754 0/0:26,0:26:78.24:0,78,956 0/0:29,0:29:72.23:0,72,924 0/0:21,0:21:57.17:0,57,684 0/0:21,0:21:60.16:0,60,700 19 46283586 . G A 2574.81 . 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C T 2251.84 . 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A G 20744.82 . 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T C 19352.76 . 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G A 3011.61 . 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C T 2818.50 . AC=8;AF=0.095;AN=84;BaseQRankSum=0.921;DP=1667;Dels=0.00;FS=1.159;HRun=0;HaplotypeScore=0.7441;InbreedingCoeff=-0.1053;MQ=58.81;MQ0=0;MQRankSum=-0.498;QD=12.10;ReadPosRankSum=-0.771 GT:AD:DP:GQ:PL 0/0:31,0:31:75.17:0,75,852 0/0:40,0:40:96.27:0,96,1162 0/1:10,10:20:99:308,0,270 0/0:101,0:101:99:0,253,3254 0/0:54,0:54:99:0,138,1774 0/0:52,0:52:99:0,138,1738 0/0:42,0:42:99:0,111,1393 0/0:52,0:52:99:0,132,1665 0/0:27,0:27:72.20:0,72,844 0/0:34,0:34:96.27:0,96,1115 0/0:38,0:38:99:0,99,1159 0/0:26,0:26:69.18:0,69,789 0/0:28,0:28:72.21:0,72,858 0/0:36,0:37:99:0,99,1136 0/0:115,0:115:99:0,295,3475 0/0:26,0:26:69.19:0,69,814 0/0:29,0:29:81.21:0,81,924 0/1:8,19:27:99:599,0,147 0/0:60,0:60:99:0,153,1833 0/0:63,0:63:99:0,147,1753 0/0:64,0:64:99:0,156,1908 0/1:25,20:45:99:479,0,599 0/0:90,0:90:99:0,217,2849 0/1:18,7:25:99:188,0,498 0/0:44,0:44:99:0,105,1341 0/1:22,15:37:99:386,0,596 0/0:17,0:17:51.14:0,51,596 0/0:32,0:32:93.20:0,93,1010 0/0:34,0:34:84.22:0,84,980 0/1:13,17:30:99:403,0,341 0/0:22,0:22:60.14:0,60,678 0/0:60,0:60:99:0,138,1699 0/1:16,8:24:99:219,0,418 0/0:18,0:18:54.14:0,54,604 0/0:18,0:18:54.15:0,54,632 0/0:35,0:35:93.24:0,93,1078 0/0:44,0:44:99:0,117,1349 0/0:27,0:27:78.18:0,78,894 0/0:28,0:28:72.21:0,72,857 0/0:20,0:20:60.15:0,60,665 0/0:26,0:26:69.20:0,69,808 0/1:12,13:25:99:357,0,346 19 46857015 . C T 4949.87 . AC=7;AF=0.083;AN=84;BaseQRankSum=5.297;DP=2008;Dels=0.00;FS=1.548;HRun=0;HaplotypeScore=1.0014;InbreedingCoeff=-0.0909;MQ=59.16;MQ0=0;MQRankSum=8.093;QD=12.72;ReadPosRankSum=1.954 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,99,1220 0/0:40,0:40:99:0,102,1220 0/0:40,0:40:96.27:0,96,1158 0/0:60,0:60:99:0,150,1855 0/0:54,0:54:99:0,135,1707 0/1:33,29:62:99:741,0,826 0/1:17,17:34:99:462,0,462 0/0:43,0:43:99:0,102,1295 0/1:20,26:46:99:724,0,486 0/1:14,23:38:99:672,0,315 0/0:44,0:44:99:0,120,1418 0/0:33,0:33:93.26:0,93,1088 0/0:36,0:36:93.25:0,93,1114 0/0:32,0:32:81.20:0,81,956 0/1:70,66:136:99:1557,0,1814 0/1:20,17:37:99:463,0,505 0/0:49,0:49:99:0,129,1454 0/0:44,0:44:99:0,117,1360 0/0:59,0:59:99:0,156,1851 0/0:90,0:91:99:0,220,2678 0/0:71,0:71:99:0,177,2115 0/0:64,0:64:99:0,162,1898 0/0:61,0:61:99:0,169,2083 0/0:34,0:34:81.24:0,81,1040 0/1:22,14:36:99:331,0,600 0/0:31,0:31:72.22:0,72,950 0/0:33,1:34:60.98:0,61,1006 0/0:38,0:38:99:0,99,1144 0/0:34,0:34:96.27:0,96,1128 0/0:35,0:35:87.25:0,87,1016 0/0:38,0:39:99:0,105,1217 0/0:66,0:67:99:0,147,1805 0/0:48,0:48:99:0,132,1521 0/0:40,0:40:99:0,108,1232 0/0:39,0:39:99:0,102,1201 0/0:45,0:45:99:0,114,1338 0/0:85,0:85:99:0,211,2451 0/0:49,1:50:99:0,102,1521 0/0:39,0:40:99:0,108,1266 0/0:34,0:34:84.25:0,84,1021 0/0:28,0:29:72.19:0,72,812 0/0:35,0:35:93.23:0,93,1045 19 47137459 . C T 7106.91 . AC=29;AF=0.345;AN=84;BaseQRankSum=-14.209;DP=613;Dels=0.00;FS=1.120;HRun=0;HaplotypeScore=0.5111;InbreedingCoeff=0.4168;MQ=58.29;MQ0=0;MQRankSum=1.834;QD=21.93;ReadPosRankSum=-0.947 GT:AD:DP:GQ:PL 1/1:0,19:19:57.15:660,57,0 0/1:6,8:14:99:224,0,142 0/0:7,0:7:18.06:0,18,224 0/1:12,9:21:99:208,0,409 0/1:15,8:23:99:211,0,469 1/1:0,19:19:51.14:598,51,0 0/1:2,5:7:64.94:125,0,65 0/1:7,11:18:99:307,0,239 0/0:8,0:8:24.07:0,24,288 0/0:8,0:8:21.07:0,21,265 0/0:6,0:6:18.06:0,18,234 1/1:0,7:7:21.06:244,21,0 1/1:0,11:11:33.09:365,33,0 1/1:0,10:10:27.08:319,27,0 1/1:0,42:42:99:1210,102,0 0/1:9,9:18:99:251,0,248 0/1:4,6:10:99:157,0,125 0/0:10,0:10:30.09:0,30,375 0/0:18,0:18:54.17:0,54,677 0/0:10,0:10:27.08:0,27,325 0/0:29,0:29:87.28:0,87,1104 0/0:16,0:16:45.14:0,45,562 0/0:24,0:24:63.21:0,63,848 0/1:7,2:9:39.78:40,0,247 1/1:0,15:15:42.12:502,42,0 0/1:9,11:20:99:275,0,318 0/0:12,0:12:33.11:0,33,423 0/0:11,0:11:33.10:0,33,413 0/0:7,0:7:21.07:0,21,264 1/1:0,9:9:24.07:287,24,0 1/1:0,18:18:51.15:599,51,0 0/1:6,13:19:99:374,0,172 0/1:9,6:15:99:152,0,296 0/0:16,0:16:45.14:0,45,562 0/0:8,0:8:24.07:0,24,299 0/0:8,0:8:24.07:0,24,293 0/0:21,0:21:54.14:0,54,638 0/0:13,0:13:36.08:0,36,424 0/0:21,0:21:57.18:0,57,726 0/0:11,0:11:33.10:0,33,408 0/0:7,0:7:21.06:0,21,252 0/0:18,0:18:45.11:0,45,540 19 47223949 . G A 7814.65 . AC=15;AF=0.179;AN=84;BaseQRankSum=-0.369;DP=1467;Dels=0.00;FS=1.069;HRun=0;HaplotypeScore=1.1095;InbreedingCoeff=0.1072;MQ=59.02;MQ0=0;MQRankSum=3.105;QD=15.66;ReadPosRankSum=0.851 GT:AD:DP:GQ:PL 0/0:16,0:16:45.12:0,45,520 0/0:24,0:24:69.18:0,69,783 0/0:22,0:22:54.13:0,54,603 0/1:65,46:112:99:1195,0,1804 1/1:0,75:75:99:2390,208,0 0/0:48,0:48:99:0,126,1522 0/0:48,0:48:99:0,132,1581 0/1:29,18:47:99:496,0,722 0/1:12,15:29:99:427,0,270 0/1:7,12:19:99:356,0,154 0/0:19,0:19:48.08:0,48,505 0/0:18,0:18:51.14:0,51,578 0/0:20,0:21:60.17:0,60,688 0/0:30,0:30:84.22:0,84,967 0/0:73,0:74:99:0,177,2063 0/0:27,0:27:81.19:0,81,892 0/0:13,0:13:36.10:0,36,407 0/0:16,0:16:45.11:0,45,503 0/0:45,0:45:99:0,126,1437 0/0:52,0:53:99:0,147,1673 0/1:24,18:42:99:461,0,670 0/1:19,9:28:99:234,0,497 0/0:76,0:76:99:0,226,2706 0/0:50,0:50:99:0,126,1563 0/0:45,0:46:99:0,120,1520 0/0:37,0:37:99:0,111,1356 0/0:19,0:19:54.12:0,54,606 0/0:19,0:19:57.15:0,57,645 0/0:14,0:14:36.10:0,36,420 0/1:10,16:26:99:448,0,264 1/1:0,22:22:63.18:735,63,0 0/0:72,1:73:99:0,168,2218 0/0:38,0:39:99:0,99,1145 0/0:27,0:27:75.16:0,75,839 0/0:20,0:20:57.16:0,57,671 0/0:27,0:27:78.20:0,78,857 0/1:20,15:35:99:330,0,501 0/1:11,10:21:99:287,0,287 0/0:27,0:27:69.19:0,69,783 0/1:12,6:18:99:103,0,320 0/0:19,0:20:51.15:0,51,615 0/1:12,13:25:99:352,0,301 19 47225561 . T G 21.59 . AC=3;AF=0.036;AN=84;BaseQRankSum=-19.512;DP=1925;Dels=0.00;FS=426.644;HRun=2;HaplotypeScore=0.8171;InbreedingCoeff=-0.0469;MQ=58.65;MQ0=0;MQRankSum=1.270;QD=0.12;ReadPosRankSum=-13.760 GT:AD:DP:GQ:PL 0/0:28,8:36:80.83:0,81,940 0/0:30,14:44:44.89:0,45,972 0/0:24,9:33:72.21:0,72,861 0/1:79,34:113:36.16:36,0,2476 0/0:45,21:66:99:0,101,1590 0/0:41,18:59:99:0,114,1474 0/0:33,15:48:96.14:0,96,1192 0/0:40,14:55:96.28:0,96,1191 0/0:22,14:37:43.17:0,43,740 0/0:35,11:46:75.37:0,75,1093 0/0:25,12:37:38.53:0,39,713 0/0:16,10:26:18.51:0,19,500 0/1:17,8:25:14.11:14,0,507 0/0:29,5:34:46.69:0,47,891 0/0:88,42:130:43.96:0,44,2559 0/1:27,11:38:43.91:44,0,794 0/0:21,8:29:60.17:0,60,715 0/0:21,8:29:57.14:0,57,662 0/0:25,10:35:4.78:0,5,763 0/0:48,21:69:99:0,115,1606 0/0:41,10:51:61.86:0,62,1283 0/0:39,10:49:99:0,114,1347 0/0:65,24:89:99:0,163,2267 0/0:22,5:27:63.18:0,63,766 0/0:37,22:59:46.25:0,46,1179 0/0:34,11:45:44.09:0,44,1133 0/0:26,9:35:42.52:0,43,793 0/0:36,8:44:89.48:0,89,1072 0/0:26,9:35:9.02:0,9,710 0/0:21,10:31:57.14:0,57,663 0/0:26,11:37:2.23:0,2,781 0/0:39,13:52:86.66:0,87,1346 0/0:37,16:53:49.84:0,50,1043 0/0:23,4:27:60.18:0,60,737 0/0:25,10:35:66.17:0,66,772 0/0:20,11:31:51.13:0,51,595 0/0:35,16:51:34.37:0,34,1138 0/0:26,10:36:18.01:0,18,758 0/0:23,11:34:13.92:0,14,695 0/0:33,6:39:61.56:0,62,978 0/0:28,9:37:45.98:0,46,904 0/0:30,8:38:53.37:0,53,916 19 47280263 . T G 2111.71 . AC=2;AF=0.024;AN=84;BaseQRankSum=12.703;DP=4080;DS;Dels=0.00;FS=0.962;HRun=0;HaplotypeScore=1.9627;InbreedingCoeff=-0.0244;MQ=59.34;MQ0=0;MQRankSum=0.583;QD=14.66;ReadPosRankSum=-0.299 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,187,2190 0/0:94,0:94:99:0,241,2914 0/0:80,0:80:99:0,214,2510 0/0:145,0:145:99:0,403,4705 0/0:145,0:145:99:0,406,4733 0/0:117,0:117:99:0,295,3657 0/0:92,0:92:99:0,262,3122 0/0:97,0:97:99:0,259,3112 0/0:85,0:85:99:0,241,2763 0/0:66,0:66:99:0,193,2234 0/0:82,0:82:99:0,229,2689 0/0:71,0:71:99:0,214,2459 0/0:67,0:67:99:0,184,2182 0/0:90,0:90:99:0,235,2793 0/0:234,0:234:99:0,614,7220 0/0:78,0:78:99:0,211,2463 0/0:98,0:98:99:0,262,3111 0/0:83,0:83:99:0,214,2581 0/0:150,1:151:99:0,406,4855 0/0:130,0:130:99:0,328,3943 0/0:137,0:137:99:0,358,4298 0/0:103,0:103:99:0,274,3266 0/0:156,0:156:99:0,439,5085 0/0:76,0:76:99:0,199,2392 0/0:106,0:106:99:0,271,3238 0/0:89,0:89:99:0,229,2714 0/0:58,0:58:99:0,147,1793 0/0:82,0:82:99:0,223,2640 0/0:86,0:86:99:0,238,2781 0/0:65,0:65:99:0,181,2119 0/0:64,0:64:99:0,178,2130 0/0:143,0:143:99:0,367,4360 0/0:103,0:103:99:0,277,3304 0/0:73,0:74:99:0,208,2426 0/0:58,0:58:99:0,162,1927 0/0:84,0:84:99:0,226,2707 0/0:146,0:146:99:0,364,4402 0/0:79,0:79:99:0,211,2442 0/0:82,0:82:99:0,232,2730 0/1:43,44:87:99:1295,0,1127 0/1:28,29:57:99:879,0,796 0/0:73,0:73:99:0,211,2420 19 47492853 . T G 3.35 . AC=1;AF=0.012;AN=84;BaseQRankSum=-31.284;DP=4205;DS;Dels=0.00;FS=216.558;HRun=2;HaplotypeScore=2.6890;InbreedingCoeff=-0.0124;MQ=59.00;MQ0=0;MQRankSum=-2.325;QD=0.02;ReadPosRankSum=-2.676 GT:AD:DP:GQ:PL 0/0:51,22:76:76.34:0,76,1536 0/0:51,22:73:44.52:0,45,1295 0/0:55,27:83:66.90:0,67,1583 0/0:105,53:159:99:0,199,3105 0/0:91,51:142:99:0,107,2590 0/0:96,49:146:99:0,200,2792 0/0:67,22:89:99:0,123,1866 0/0:87,34:122:99:0,203,2445 0/0:77,25:103:99:0,163,2273 0/0:45,19:66:44.82:0,45,1125 0/0:55,22:77:99:0,156,1746 0/0:38,22:60:82.56:0,83,1141 0/0:34,8:42:77.53:0,78,1042 0/0:58,20:78:99:0,121,1791 0/0:161,81:244:99:0,218,4477 0/0:66,21:87:99:0,113,1940 0/0:61,22:83:99:0,177,1927 0/0:50,26:76:99:0,113,1492 0/1:92,53:145:46.87:47,0,2635 0/0:136,28:165:99:0,315,4048 0/0:87,57:144:75.22:0,75,2734 0/0:76,24:100:99:0,162,2224 0/0:112,64:176:99:0,175,3051 0/0:54,42:97:92.93:0,93,1473 0/0:75,39:115:99:0,176,2162 0/0:73,30:104:99:0,113,2076 0/0:39,23:62:78.61:0,79,1145 0/0:53,27:80:16.13:0,16,1455 0/0:37,22:60:78.54:0,79,1069 0/0:40,18:59:27.66:0,28,1027 0/0:41,21:62:86.36:0,86,1095 0/0:106,30:136:99:0,247,3029 0/0:94,36:130:99:0,188,2724 0/0:44,22:66:63.76:0,64,1259 0/0:43,29:72:43.50:0,44,1259 0/0:60,27:87:82.39:0,82,1553 0/0:75,46:121:43.22:0,43,2090 0/0:64,23:87:99:0,168,1975 0/0:57,31:88:99:0,106,1657 0/0:58,23:81:99:0,125,1769 0/0:55,20:75:99:0,111,1716 0/0:55,31:86:61.67:0,62,1587 19 47542726 . C T 1413.46 . 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G C 380.65 . 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G A 8903.97 . 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G C 92350.02 . 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G A 69189.95 . 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C T 244.59 . 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A G 2802.74 . 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C T 694.98 . 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C A 1660.45 . AC=33;AF=0.393;AN=84;BaseQRankSum=-19.909;DP=1759;Dels=0.00;FS=749.664;HRun=2;HaplotypeScore=0.9673;InbreedingCoeff=-0.6473;MQ=58.00;MQ0=1;MQRankSum=2.305;QD=1.28;ReadPosRankSum=-11.192 GT:AD:DP:GQ:PL 0/1:22,15:37:25.72:26,0,554 0/1:18,15:33:71.54:72,0,470 0/1:19,9:28:22.66:23,0,401 0/1:33,21:54:5.36:5,0,899 0/1:18,25:43:79.01:79,0,444 0/1:15,19:34:38.31:38,0,387 0/0:27,21:48:15.72:0,16,720 0/1:15,31:46:55.85:56,0,360 0/1:21,6:27:3.24:3,0,448 0/1:19,10:29:5.72:6,0,502 0/1:26,15:41:12.12:12,0,679 0/1:24,13:37:79.63:80,0,596 0/1:17,12:29:99:128,0,360 0/1:28,14:42:99:147,0,633 0/1:65,38:104:99:158,0,1613 0/1:25,14:39:39.09:39,0,665 0/1:28,13:41:34.66:35,0,747 0/1:16,14:30:19.55:20,0,394 0/0:42,17:59:15.75:0,16,1038 0/0:56,20:76:32.18:0,32,1245 0/1:28,18:46:10.05:10,0,806 0/1:30,17:48:18.45:18,0,725 0/1:31,25:56:99:102,0,809 0/1:10,12:22:37.69:38,0,246 0/0:22,14:36:16.40:0,16,450 0/1:14,17:31:52.10:52,0,367 0/1:22,11:33:39.23:39,0,630 0/1:15,9:24:27.15:27,0,265 0/0:22,7:29:29.73:0,30,653 0/1:27,19:46:59.58:60,0,657 0/1:20,16:37:52.65:53,0,542 0/0:57,23:80:1.48:0,1,1387 0/0:37,19:56:2.80:0,3,808 0/1:30,14:44:53.68:54,0,809 0/1:20,13:33:64.94:65,0,525 0/0:26,14:40:9.05:0,9,654 0/1:41,16:57:99:104,0,950 0/0:21,12:33:23.67:0,24,571 0/1:14,11:25:89.80:90,0,441 0/1:26,12:38:71.14:71,0,725 0/1:22,14:36:64.83:65,0,527 0/1:17,15:32:57.35:57,0,447 19 47883086 . T G 11327.56 . AC=15;AF=0.179;AN=84;BaseQRankSum=-8.489;DP=2213;Dels=0.00;FS=38.058;HRun=0;HaplotypeScore=4.4803;InbreedingCoeff=-0.0551;MQ=58.76;MQ0=0;MQRankSum=1.017;QD=15.39;ReadPosRankSum=1.045 GT:AD:DP:GQ:PL 0/0:41,0:42:99:0,114,1410 0/0:30,0:30:87.27:0,87,1055 0/0:36,0:36:99:0,99,1182 0/1:52,47:100:99:1284,0,1630 0/1:53,53:107:99:1515,0,1529 0/0:63,0:63:99:0,169,2171 0/0:67,0:67:99:0,193,2426 0/1:27,35:62:99:984,0,799 0/0:33,0:33:93.29:0,93,1143 0/0:32,1:33:56.31:0,56,1061 0/0:28,2:30:81.23:0,81,962 0/0:44,0:44:99:0,123,1506 0/0:30,0:30:87.25:0,87,1032 0/0:54,0:54:99:0,156,1882 0/0:108,0:109:99:0,304,3715 0/0:50,0:51:99:0,144,1717 0/0:30,0:30:87.24:0,87,1033 0/1:21,16:37:99:454,0,588 0/1:37,30:67:99:771,0,1099 0/0:95,1:96:99:0,256,3078 0/0:98,0:99:99:0,289,3526 0/0:69,0:69:99:0,202,2432 0/0:88,0:88:99:0,250,3060 0/1:19,23:42:99:702,0,605 0/0:64,0:64:99:0,178,2194 1/1:0,46:46:99:1554,126,0 0/1:16,21:37:99:560,0,478 0/1:16,17:33:99:413,0,455 0/1:18,13:31:99:354,0,496 0/0:41,0:42:99:0,117,1403 0/0:36,0:36:99:0,108,1330 0/1:35,44:79:99:1098,0,1069 0/0:66,0:66:99:0,190,2271 0/0:32,0:32:90.26:0,90,1089 0/1:20,17:37:99:457,0,582 0/0:47,1:48:99:0,135,1644 0/0:71,0:71:99:0,193,2361 0/0:36,0:36:99:0,105,1269 0/0:41,0:41:99:0,114,1391 0/1:6,20:26:99:483,0,154 0/1:9,23:32:99:697,0,222 0/0:37,0:37:99:0,105,1278 19 47883096 . C T 3095.99 . AC=3;AF=0.036;AN=84;BaseQRankSum=-8.142;DP=2020;Dels=0.00;FS=1.541;HRun=1;HaplotypeScore=4.1104;InbreedingCoeff=-0.0370;MQ=58.66;MQ0=0;MQRankSum=4.330;QD=15.03;ReadPosRankSum=0.125 GT:AD:DP:GQ:PL 0/0:33,0:33:96.29:0,96,1192 0/0:25,0:25:69.22:0,69,872 0/0:33,0:33:90.28:0,90,1145 0/0:101,0:101:99:0,283,3740 0/0:100,0:101:99:0,271,3594 0/0:66,0:67:99:0,181,2385 0/0:53,0:53:99:0,138,1857 0/0:57,0:57:99:0,147,1883 0/0:29,0:29:84.23:0,84,1045 0/0:27,0:27:81.25:0,81,1003 0/0:22,0:22:66.20:0,66,817 0/0:45,0:45:99:0,132,1671 0/0:28,0:28:78.24:0,78,973 0/0:44,0:44:99:0,126,1588 0/0:99,0:99:99:0,271,3386 0/1:17,23:40:99:706,0,506 0/0:26,0:26:72.22:0,72,887 0/0:29,0:29:81.26:0,81,1022 0/0:64,0:66:99:0,181,2268 0/0:75,0:75:99:0,211,2570 0/1:36,53:89:99:1612,0,998 0/0:59,0:59:99:0,168,2109 0/0:77,0:77:99:0,205,2704 0/0:39,0:39:99:0,114,1480 0/0:59,0:59:99:0,159,2051 0/0:52,0:52:99:0,144,1898 0/0:32,0:32:90.27:0,90,1117 0/0:35,0:35:90.28:0,90,1136 0/0:23,0:23:63.19:0,63,784 0/0:35,0:35:96.30:0,96,1193 0/0:33,0:33:99:0,99,1253 0/1:44,32:77:99:854,0,1343 0/0:64,0:64:99:0,184,2265 0/0:29,0:30:78.23:0,78,959 0/0:37,0:38:99:0,102,1266 0/0:37,0:37:99:0,108,1317 0/0:70,0:71:99:0,193,2413 0/0:35,0:35:96.30:0,96,1201 0/0:33,0:33:96.29:0,96,1182 0/0:32,0:32:90.28:0,90,1133 0/0:34,0:34:99:0,99,1217 0/0:36,0:36:99:0,102,1266 19 47919955 . C A 52.53 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.227;DP=440;Dels=0.00;FS=7.038;HRun=0;HaplotypeScore=0.3326;InbreedingCoeff=-0.0267;MQ=58.41;MQ0=0;MQRankSum=0.476;QD=13.13;ReadPosRankSum=0.083 GT:AD:DP:GQ:PL 0/0:9,0:9:27.08:0,27,327 0/0:14,1:15:0.54:0,1,400 0/0:7,0:7:18.05:0,18,210 0/0:15,0:15:42.14:0,42,559 0/0:9,0:9:27.08:0,27,337 0/0:7,0:7:21.07:0,21,279 0/0:10,0:10:30.07:0,30,360 0/0:6,0:6:15.05:0,15,197 0/0:14,0:14:39.12:0,39,491 0/0:4,0:4:12.04:0,12,150 0/0:10,0:10:30.08:0,30,357 0/0:6,0:6:18.06:0,18,224 0/0:7,0:7:21.07:0,21,263 0/0:6,0:6:18.05:0,18,203 0/0:33,0:33:90.25:0,90,1087 0/0:12,0:12:33.10:0,33,392 0/0:8,0:8:24.06:0,24,294 0/0:6,0:6:18.06:0,18,223 0/0:18,0:18:51.15:0,51,617 0/0:14,0:14:42.13:0,42,511 0/0:12,1:13:30.09:0,30,376 0/0:13,0:13:39.09:0,39,465 0/0:20,0:20:57.18:0,57,753 0/0:2,0:2:6.02:0,6,78 0/0:7,0:7:21.06:0,21,252 0/0:9,0:9:27.08:0,27,340 0/0:9,1:10:0.15:15,0,241 0/0:9,0:9:24.07:0,24,287 0/1:1,3:4:18.56:96,0,19 0/0:9,0:9:27.07:0,27,307 0/0:10,0:10:30.09:0,30,373 0/0:16,0:16:45.13:0,45,537 0/0:15,0:15:45.13:0,45,536 0/0:11,0:11:33.10:0,33,404 0/0:11,0:11:30.08:0,30,350 0/0:9,0:9:24.07:0,24,293 0/0:19,0:19:51.15:0,51,624 0/0:10,0:10:27.08:0,27,341 0/0:8,0:8:24.07:0,24,291 0/0:6,0:6:15.04:0,15,175 0/0:4,0:4:12.03:0,12,134 0/0:9,0:9:27.08:0,27,327 19 47935572 . G A 10205.45 . AC=10;AF=0.119;AN=84;BaseQRankSum=4.078;DP=2759;Dels=0.00;FS=5.456;HRun=0;HaplotypeScore=2.2510;InbreedingCoeff=-0.1351;MQ=58.46;MQ0=0;MQRankSum=2.536;QD=13.12;ReadPosRankSum=1.799 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,120,1376 0/0:44,0:44:99:0,120,1398 0/0:44,1:45:81.19:0,81,1275 0/0:161,0:161:99:0,433,5320 0/0:150,0:150:99:0,403,5035 0/0:116,0:116:99:0,304,3802 0/0:79,0:79:99:0,202,2555 0/0:94,0:94:99:0,256,3116 0/0:38,0:38:99:0,108,1232 0/0:37,0:37:99:0,99,1119 0/1:21,17:38:99:437,0,542 0/0:40,0:40:99:0,114,1331 0/0:29,1:30:53.24:0,53,924 0/0:44,0:44:99:0,123,1432 0/1:88,79:167:99:2098,0,2259 0/0:43,0:43:99:0,126,1392 0/1:33,21:54:99:569,0,883 0/0:53,0:53:99:0,150,1716 0/0:72,0:72:99:0,199,2245 0/0:98,0:98:99:0,250,2914 0/1:42,32:74:99:859,0,955 0/0:55,0:55:99:0,156,1755 0/1:74,65:139:99:1816,0,2085 0/0:86,0:86:99:0,217,2710 0/0:112,0:112:99:0,274,3488 0/0:70,0:70:99:0,196,2407 0/0:43,0:43:99:0,123,1411 0/0:45,0:45:99:0,123,1354 0/0:40,0:40:99:0,111,1285 0/0:43,0:43:99:0,111,1282 0/1:20,27:47:99:797,0,545 0/1:34,31:65:99:860,0,876 0/0:47,0:47:99:0,123,1366 0/0:53,0:53:99:0,150,1698 0/1:29,26:55:99:690,0,722 0/0:39,0:39:99:0,105,1241 0/1:37,42:79:99:1159,0,881 0/0:51,0:51:99:0,138,1558 0/1:28,32:60:99:920,0,700 0/0:42,0:42:99:0,117,1357 0/0:31,0:31:75.19:0,75,856 0/0:36,0:36:90.25:0,90,1072 19 47935658 . G C 132.69 . AC=6;AF=0.071;AN=84;BaseQRankSum=-16.414;DP=2956;Dels=0.01;FS=1102.941;HRun=1;HaplotypeScore=8.1433;InbreedingCoeff=-0.1012;MQ=59.05;MQ0=0;MQRankSum=-0.118;QD=0.39;ReadPosRankSum=-15.783 GT:AD:DP:GQ:PL 0/1:25,13:38:23.61:24,0,720 0/0:38,10:48:48.34:0,48,1232 0/0:25,7:32:12:0,12,760 0/0:167,49:217:99:0,455,6254 0/0:130,3:134:99:0,341,4822 0/0:125,23:149:99:0,314,4516 0/0:89,23:112:99:0,203,2934 0/0:108,29:137:99:0,241,3780 0/0:27,15:42:59.54:0,60,978 0/1:20,12:32:65.56:66,0,565 0/1:21,13:35:41.28:41,0,623 0/0:35,13:48:41.25:0,41,1096 0/0:28,6:34:78.24:0,78,976 0/0:40,12:52:99:0,120,1474 0/1:93,41:134:73.07:73,0,2741 0/0:37,6:43:68.70:0,69,1155 0/0:26,13:39:43.41:0,43,819 0/0:26,6:32:71.58:0,72,854 0/0:44,16:60:19.65:0,20,1188 0/0:72,13:85:99:0,171,2074 0/0:60,16:76:99:0,126,1796 0/0:42,16:58:95.78:0,96,1495 0/0:157,52:209:99:0,303,5534 0/0:105,26:131:99:0,241,3714 0/0:113,26:139:99:0,197,3877 0/0:98,18:117:99:0,184,3403 0/0:29,8:37:2.67:1,0,873 0/0:22,8:30:32.78:0,33,685 0/0:26,8:34:13.34:0,13,828 0/0:23,3:26:36.10:0,36,837 0/0:35,8:44:39.86:0,40,1055 0/0:49,22:72:99:0,104,1596 0/0:40,10:50:80.91:0,81,1339 0/0:34,9:43:96.29:0,96,1202 0/0:41,9:50:99:0,111,1319 0/0:26,13:39:2.07:2,0,796 0/1:53,17:70:13.13:13,0,1419 0/0:32,14:46:35:0,35,1014 0/0:39,8:47:45.62:0,46,1256 0/1:30,4:34:17.19:17,0,896 0/0:24,4:28:45.60:0,46,864 0/0:27,9:36:2.93:0,0,850 19 47979936 . C T 145.85 . 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C T 882.08 . AC=5;AF=0.060;AN=84;BaseQRankSum=3.632;DP=623;Dels=0.00;FS=3.260;HRun=0;HaplotypeScore=0.4668;InbreedingCoeff=-0.0680;MQ=58.65;MQ0=0;MQRankSum=4.311;QD=10.02;ReadPosRankSum=-0.524 GT:AD:DP:GQ:PL 0/0:13,0:13:36.07:0,36,402 0/0:10,0:10:24.06:0,24,274 0/0:12,0:12:33.09:0,33,385 0/0:18,0:18:51.15:0,51,627 0/0:13,0:13:36.10:0,36,429 0/0:12,0:12:33.10:0,33,406 0/0:8,0:8:21.07:0,21,274 0/0:14,0:14:36.08:0,36,424 0/0:15,0:15:39.10:0,39,464 0/0:12,1:13:3.44:0,3,299 0/0:10,0:10:30.08:0,30,334 0/0:8,0:8:24.06:0,24,269 0/0:10,0:10:30.08:0,30,338 0/0:11,0:11:30.07:0,30,336 0/0:38,0:38:99:0,102,1163 0/0:18,0:18:45.12:0,45,512 0/0:10,0:10:30.07:0,30,318 0/1:10,6:16:99:173,0,301 0/0:23,0:23:57.13:0,57,619 0/0:21,0:21:57.14:0,57,648 0/0:25,0:25:66.16:0,66,732 0/0:16,0:16:48.13:0,48,541 0/0:11,0:11:33.09:0,33,384 0/0:15,0:15:39.11:0,39,477 0/0:10,0:11:30.09:0,30,356 0/1:3,2:5:58.91:59,0,88 0/0:11,0:11:33.09:0,33,371 0/0:17,0:17:45.10:0,45,502 0/0:11,0:11:30.09:0,30,350 0/0:12,0:12:36.09:0,36,400 0/1:10,9:19:99:273,0,242 0/0:24,0:24:66.19:0,66,801 0/0:17,0:17:48.11:0,48,520 0/0:8,0:8:24.06:0,24,265 0/0:15,0:15:42.10:0,42,463 0/0:9,0:9:24.06:0,24,273 0/1:25,12:37:99:306,0,644 0/1:5,6:11:99:167,0,156 0/0:21,0:21:57.10:0,57,608 0/0:13,0:13:36.09:0,36,397 0/0:9,0:9:24.07:0,24,290 0/0:13,0:13:33.07:0,33,390 19 48198675 . A G 1304.04 . AC=17;AF=0.202;AN=84;BaseQRankSum=5.609;DP=452;Dels=0.00;FS=0.641;HRun=1;HaplotypeScore=0.3863;InbreedingCoeff=0.1108;MQ=59.19;MQ0=0;MQRankSum=0.941;QD=11.85;ReadPosRankSum=-1.635 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,177 0/0:6,0:6:18.05:0,18,211 0/0:8,0:8:18.03:0,18,222 0/0:6,0:6:12.04:0,12,164 0/0:30,0:30:60.19:0,60,807 0/0:13,0:13:33.09:0,33,417 0/0:23,0:23:48.16:0,48,651 0/0:10,0:10:27.09:0,27,344 0/0:5,0:5:15.05:0,15,184 0/0:11,0:11:27.08:0,27,340 0/0:11,0:11:21.07:0,21,292 0/0:7,0:7:18.06:0,18,223 0/0:8,0:8:18.06:0,18,236 0/0:7,0:7:21.06:0,21,255 0/0:38,0:39:96.29:0,96,1195 0/1:4,1:5:19.51:20,0,99 0/0:5,0:5:15.05:0,15,186 0/0:6,0:6:15.05:0,15,193 0/0:22,0:22:45.14:0,45,599 0/0:20,0:20:45.14:0,45,583 0/0:17,0:17:45.14:0,45,568 0/1:4,4:8:93.34:93,0,116 0/1:7,1:8:21.16:21,0,209 1/1:0,6:6:12.04:173,12,0 1/1:0,9:9:18.06:243,18,0 0/1:7,3:10:96.55:97,0,200 0/1:7,1:8:18.94:19,0,204 0/0:6,0:6:15.05:0,15,195 0/1:0,2:2:0.97:79,6,0 0/1:4,4:8:66.02:66,0,128 0/1:4,7:11:97.65:153,0,98 0/0:25,0:25:51.17:0,51,691 0/1:4,3:7:66.71:67,0,125 0/0:6,0:6:15.02:0,15,177 0/0:8,0:8:21.07:0,21,258 0/1:2,7:9:34.75:210,0,35 0/0:17,0:17:45.12:0,45,544 0/0:15,0:15:30.08:0,30,389 0/1:4,5:9:93.99:126,0,94 0/1:3,2:5:46.98:47,0,97 0/1:3,2:5:67.92:68,0,70 0/0:6,0:6:15.05:0,15,191 19 48254799 . T C 1168.33 . AC=3;AF=0.036;AN=84;BaseQRankSum=-2.797;DP=1775;Dels=0.00;FS=0.545;HRun=0;HaplotypeScore=1.5387;InbreedingCoeff=-0.0370;MQ=59.12;MQ0=0;MQRankSum=1.834;QD=12.70;ReadPosRankSum=-1.216 GT:AD:DP:GQ:PL 0/0:21,0:21:60.19:0,60,733 0/0:41,0:41:99:0,108,1321 0/0:27,0:27:72.22:0,72,888 0/0:84,0:84:99:0,205,2590 0/0:63,0:63:99:0,153,1933 0/0:55,0:55:99:0,147,1877 0/0:30,0:30:81.26:0,81,1033 0/0:44,0:44:99:0,117,1456 0/0:27,0:27:72.22:0,72,883 0/0:34,0:34:87.26:0,87,1049 0/0:35,0:35:99:0,102,1226 0/0:43,0:43:99:0,117,1410 0/0:23,0:23:66.20:0,66,792 0/0:34,0:34:96.29:0,96,1174 0/0:132,0:132:99:0,340,4136 0/1:14,15:29:99:396,0,419 0/0:43,0:43:99:0,120,1466 0/0:22,0:22:63.19:0,63,770 0/0:48,0:48:99:0,129,1597 0/0:60,0:60:99:0,150,1887 0/0:56,0:57:99:0,138,1732 0/0:31,0:31:87.24:0,87,1037 0/0:64,0:64:99:0,175,2147 0/0:20,0:20:48.15:0,48,588 0/0:53,0:53:99:0,135,1712 0/0:49,0:49:99:0,120,1472 0/0:26,0:26:72.22:0,72,875 0/0:50,0:50:99:0,132,1612 0/0:25,0:25:69.21:0,69,849 0/1:14,13:27:99:314,0,380 0/1:17,19:36:99:533,0,427 0/0:66,0:66:99:0,165,2052 0/0:53,0:53:99:0,135,1680 0/0:26,0:26:69.22:0,69,869 0/0:27,0:27:72.22:0,72,879 0/0:42,0:42:99:0,117,1418 0/0:44,0:44:99:0,120,1442 0/0:34,0:34:96.29:0,96,1173 0/0:34,0:34:90.28:0,90,1100 0/0:36,0:36:93.25:0,93,1113 0/0:28,0:28:75.23:0,75,924 0/0:52,0:52:99:0,138,1689 19 48257853 . C G 25.42 . AC=3;AF=0.050;AN=60;BaseQRankSum=-2.488;DP=114;Dels=0.00;FS=39.034;HRun=1;HaplotypeScore=0.1021;InbreedingCoeff=-0.1535;MQ=43.25;MQ0=6;MQRankSum=-2.453;QD=2.12;ReadPosRankSum=-2.910 GT:AD:DP:GQ:PL ./. ./. ./. 0/0:3,0:3:3:0,3,28 ./. ./. 0/0:2,0:2:6:0,6,56 0/0:3,0:3:6.02:0,6,67 ./. ./. 0/0:1,0:1:3.01:0,3,33 0/0:2,1:3:6.02:0,6,75 0/0:3,0:3:6.02:0,6,67 0/0:3,0:3:6.02:0,6,79 0/0:7,0:7:18.05:0,18,213 0/1:1,2:3:30.29:55,0,30 ./. 0/0:3,0:3:9.03:0,9,112 0/0:2,1:3:3.01:0,3,31 0/0:8,1:9:24.05:0,24,250 0/0:4,1:5:9.03:0,9,108 0/0:3,0:3:6.02:0,6,77 0/1:2,1:3:18.64:19,0,64 0/0:4,0:4:12.04:0,12,146 ./. ./. 0/0:3,0:3:9.03:0,9,108 0/0:2,1:3:3.01:0,3,33 0/0:4,0:4:9.02:0,9,98 ./. 0/0:5,0:5:12.03:0,12,143 0/0:7,1:8:15.03:0,15,156 0/0:2,0:2:3.01:0,3,33 ./. 0/1:4,2:6:17.96:18,0,99 0/0:2,0:2:6.01:0,6,60 0/0:4,0:4:9.03:0,9,115 0/0:3,0:3:6.02:0,6,70 0/0:1,0:1:3.01:0,3,35 0/0:2,0:2:6:0,6,61 0/0:1,0:1:3.01:0,3,34 0/0:2,1:3:6.02:0,6,70 19 48257865 . G A 16.55 . AC=1;AF=0.014;AN=70;BaseQRankSum=-1.061;DP=134;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.3802;InbreedingCoeff=-0.1114;MQ=50.00;MQ0=1;MQRankSum=0.261;QD=5.52;ReadPosRankSum=2.244 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,28 0/0:3,0:3:6.02:0,6,71 ./. 0/0:4,0:4:12.03:0,12,139 ./. ./. 0/0:2,0:2:3:0,3,28 0/0:5,0:5:15.04:0,15,177 ./. 0/0:1,0:1:3.01:0,3,33 0/0:3,0:3:9.03:0,9,104 0/0:4,0:4:9.03:0,9,109 0/0:4,0:4:12.03:0,12,136 0/0:4,0:4:6.02:0,6,74 0/0:11,0:11:27.07:0,27,297 0/0:1,0:1:3.01:0,3,32 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:6.02:0,6,69 0/0:3,0:3:9.03:0,9,102 0/0:9,0:9:21.05:0,21,233 0/0:5,0:5:12.04:0,12,149 0/0:5,0:5:12.03:0,12,135 0/0:3,0:3:9.01:0,9,106 0/0:5,0:5:15.05:0,15,197 ./. ./. 0/1:1,2:3:29.55:59,0,30 0/0:1,0:2:3.01:0,3,39 0/0:5,1:6:0.23:13,0,125 0/0:3,0:3:6.01:0,6,65 0/0:5,0:5:12.04:0,12,153 0/0:12,0:12:30.06:0,30,337 0/0:2,0:2:3.01:0,3,32 0/0:1,0:1:3.01:0,3,34 0/0:3,0:3:9.03:0,9,107 0/0:3,0:3:9.03:0,9,112 0/0:4,0:5:9.03:0,9,107 0/0:3,0:3:9.02:0,9,101 0/0:3,0:3:9.02:0,9,97 0/0:4,0:4:9.03:0,9,105 0/0:2,0:2:6.02:0,6,71 ./. 19 48257869 . C T 19.81 . AC=1;AF=0.014;AN=74;BaseQRankSum=0.023;DP=141;Dels=0.00;FS=3.027;HRun=0;HaplotypeScore=0.3861;InbreedingCoeff=0.1748;MQ=51.01;MQ0=0;MQRankSum=0.789;QD=6.60;ReadPosRankSum=-1.899 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,28 0/0:4,0:4:12.03:0,12,131 0/0:2,0:2:6.01:0,6,65 0/0:4,0:4:12.03:0,12,133 ./. ./. 0/0:1,0:1:3:0,3,28 0/0:4,0:4:12.03:0,12,132 ./. 0/0:1,0:1:3.01:0,3,30 0/0:3,0:3:9.02:0,9,99 0/0:6,0:6:15.04:0,15,166 0/0:5,0:5:15.04:0,15,160 0/0:3,0:3:9.01:0,9,86 0/0:11,0:11:27.07:0,27,304 0/0:2,0:2:6.02:0,6,74 0/0:2,0:2:6.01:0,6,63 0/0:3,0:3:9.03:0,9,102 0/0:3,0:3:9.02:0,9,101 0/0:8,0:8:21.05:0,21,222 0/0:5,0:5:12.03:0,12,128 0/0:5,0:5:12:0,12,120 0/0:4,0:4:9.03:0,9,108 0/0:5,0:5:15.04:0,15,173 ./. ./. 0/0:3,0:3:9.02:0,9,97 0/0:2,0:2:3.01:0,3,30 0/0:5,0:5:12.01:0,12,117 0/0:3,0:3:6.01:0,6,60 0/0:4,0:4:9.02:0,9,96 0/0:13,0:13:33.08:0,33,358 0/0:3,0:3:9.03:0,9,101 0/0:1,0:1:2.98:0,3,22 0/0:2,0:2:6.01:0,6,62 0/0:4,0:4:12.03:0,12,128 0/0:5,0:5:15.04:0,15,165 0/0:3,0:3:9.03:0,9,106 0/0:3,0:3:9.02:0,9,99 0/0:4,0:4:12.03:0,12,128 0/1:0,3:3:0.97:71,6,0 0/0:1,0:1:3:0,3,26 19 48259787 . C T 1692.06 . 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T C 15886.73 . 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G A 28344.33 . 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C T 843.70 . 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C G 9208.05 . 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A G 3767.60 . 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T C 1523.53 . 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G C 795.32 . 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A G 1308.07 . 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G A 5187.30 . 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C T 1062.60 . 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C T 25431.93 . 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C T 892.61 . 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A G 3899.07 . 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G A 1809.33 . 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C G 168.50 . 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C T 511.59 . 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G T 8760.62 . 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C T 3862.24 . 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T C 22060.55 . 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T C 2604.25 . 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G A 26619.08 . 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G A 484.30 . 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T C 4931.14 . 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C G 1255.18 . 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A G 68555.23 . 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T G 20898.59 . 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G C 27315.97 . 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A G 763.87 . 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A G 2048.31 . 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T C 2945.30 . 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C T 224.13 . 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A G 2254.30 . 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T G 2355.64 . 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C T 1904.95 . 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G A 1065.17 . 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A G 1981.94 . 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C T 3156.99 . 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G T 2176.25 . 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A C 888.56 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.380;DP=1619;Dels=0.00;FS=0.640;HRun=2;HaplotypeScore=1.2152;InbreedingCoeff=-0.0370;MQ=58.90;MQ0=0;MQRankSum=-0.778;QD=11.69;ReadPosRankSum=-0.085 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,108,1258 0/0:28,0:28:78.21:0,78,910 0/0:24,0:24:72.19:0,72,834 0/0:75,1:77:99:0,208,2453 0/0:77,0:78:99:0,220,2571 0/0:36,0:36:99:0,102,1191 0/0:38,0:38:99:0,99,1182 0/0:50,0:50:99:0,138,1651 0/0:31,0:31:90.25:0,90,1048 0/0:25,0:25:66.20:0,66,792 0/0:32,0:32:93.23:0,93,1070 0/0:35,0:36:87.24:0,87,1059 0/0:22,0:22:60.18:0,60,713 0/0:25,1:26:72.20:0,72,841 0/0:86,0:88:99:0,232,2657 0/0:27,1:29:78.20:0,78,912 0/0:23,1:24:66.20:0,66,797 0/0:29,0:29:81.21:0,81,940 0/0:60,0:60:99:0,156,1835 0/0:62,1:63:99:0,156,1903 0/0:56,0:56:99:0,147,1781 0/0:24,0:24:63.17:0,63,738 0/0:59,0:61:99:0,162,1928 0/0:26,0:26:78.21:0,78,928 0/0:46,0:46:99:0,123,1512 0/0:34,0:34:96.28:0,96,1133 0/1:10,9:20:99:226,0,294 0/0:28,0:28:75.21:0,75,883 0/1:11,11:23:99:300,0,330 0/0:26,0:26:66.19:0,66,795 0/0:23,0:23:66.17:0,66,762 0/0:62,1:63:99:0,162,1951 0/0:43,0:45:99:0,114,1368 0/0:31,1:32:92.08:0,92,1057 0/1:16,17:33:99:439,0,403 0/0:41,0:41:99:0,111,1285 0/0:45,0:45:99:0,129,1495 0/0:34,0:35:93.25:0,93,1100 0/0:31,0:31:84.24:0,84,971 0/0:39,0:40:99:0,99,1190 0/0:29,0:29:84.24:0,84,982 0/0:25,0:25:66.20:0,66,817 19 49686441 . C A 804.86 . AC=2;AF=0.024;AN=84;BaseQRankSum=-6.567;DP=1983;Dels=0.00;FS=14.620;HRun=1;HaplotypeScore=1.0909;InbreedingCoeff=-0.0244;MQ=58.93;MQ0=0;MQRankSum=0.242;QD=9.94;ReadPosRankSum=-0.098 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1538 0/0:47,0:47:99:0,132,1665 0/0:35,0:35:96.30:0,96,1202 0/0:93,0:93:99:0,226,3005 0/0:84,0:84:99:0,229,3020 0/0:45,0:45:99:0,117,1604 0/0:35,0:35:99:0,99,1316 0/0:50,0:50:99:0,132,1784 0/1:28,18:46:99:446,0,748 0/1:20,15:35:99:421,0,532 0/0:42,0:42:99:0,111,1366 0/0:40,0:40:99:0,108,1350 0/0:26,0:26:75.22:0,75,917 0/0:39,0:39:99:0,108,1345 0/0:102,0:103:99:0,265,3356 0/0:32,0:32:93.29:0,93,1170 0/0:35,0:35:93.28:0,93,1163 0/0:35,0:35:99:0,99,1254 0/0:60,0:61:99:0,166,2063 0/0:68,0:68:99:0,174,2184 0/0:54,1:55:99:0,129,1684 0/0:35,0:35:90.28:0,90,1151 0/0:92,0:93:99:0,229,3076 0/0:28,1:29:69.23:0,69,957 0/0:64,0:64:99:0,154,2098 0/0:39,0:40:99:0,99,1313 0/0:23,0:23:69.22:0,69,882 0/0:38,0:38:99:0,111,1362 0/0:38,1:39:96.29:0,96,1216 0/0:32,0:32:90.28:0,90,1142 0/0:26,0:26:72.22:0,72,912 0/0:77,0:78:99:0,196,2480 0/0:54,0:55:99:0,141,1780 0/0:35,0:35:99:0,102,1255 0/0:35,0:35:99:0,99,1240 0/0:48,0:48:99:0,123,1584 0/0:56,0:57:99:0,153,1940 0/0:40,0:40:99:0,108,1374 0/0:46,0:46:99:0,129,1614 0/0:39,0:39:99:0,108,1386 0/0:34,0:34:90.28:0,90,1143 0/0:43,0:43:99:0,111,1397 19 49705249 . G A 4594.04 . AC=2;AF=0.024;AN=84;BaseQRankSum=6.468;DP=4269;DS;Dels=0.00;FS=34.624;HRun=0;HaplotypeScore=2.1914;InbreedingCoeff=-0.0244;MQ=58.78;MQ0=0;MQRankSum=-0.610;QD=14.40;ReadPosRankSum=1.101 GT:AD:DP:GQ:PL 0/0:76,1:77:99:0,171,2352 0/0:60,0:61:99:0,180,2041 0/0:58,0:59:99:0,159,1833 0/0:200,0:200:99:0,554,6876 0/0:179,1:180:99:0,473,6308 0/1:90,81:171:99:2438,0,2587 0/0:140,0:140:99:0,376,4716 0/1:73,75:148:99:2156,0,2084 0/0:91,0:91:99:0,256,2987 0/0:67,0:67:99:0,196,2242 0/0:62,0:62:99:0,180,2049 0/0:64,0:64:99:0,175,2068 0/0:66,0:66:99:0,181,2108 0/0:76,0:76:99:0,211,2414 0/0:155,0:155:99:0,448,5138 0/0:83,0:83:99:0,223,2578 0/0:83,0:83:99:0,229,2708 0/0:75,0:75:99:0,220,2549 0/0:118,0:118:99:0,301,3587 0/0:149,0:149:99:0,391,4696 0/0:127,0:127:99:0,337,3988 0/0:70,0:71:99:0,199,2361 0/0:193,0:193:99:0,536,6725 0/0:153,0:153:99:0,394,5050 0/0:178,0:178:99:0,454,5758 0/0:156,0:156:99:0,427,5343 0/0:55,0:55:99:0,150,1751 0/0:78,0:78:99:0,217,2504 0/0:70,0:70:99:0,196,2309 0/0:74,0:74:99:0,192,2239 0/0:60,0:60:99:0,177,2029 0/0:123,0:123:99:0,340,3987 0/0:75,0:75:99:0,220,2516 0/0:83,0:83:99:0,232,2666 0/0:83,0:83:99:0,229,2644 0/0:80,0:80:99:0,223,2624 0/0:137,0:138:99:0,355,4257 0/0:54,0:54:99:0,156,1814 0/0:59,0:59:99:0,162,1878 0/0:91,0:91:99:0,247,2895 0/0:71,0:72:99:0,208,2405 0/0:71,0:71:99:0,208,2443 19 49705295 . A C 20.84 . AC=3;AF=0.036;AN=84;BaseQRankSum=-28.239;DP=3380;DS;Dels=0.00;FS=584.616;HRun=2;HaplotypeScore=3.2677;InbreedingCoeff=-0.0748;MQ=58.56;MQ0=0;MQRankSum=-2.902;QD=0.11;ReadPosRankSum=-8.735 GT:AD:DP:GQ:PL 0/0:30,15:45:1.21:5,0,800 0/0:41,13:54:99:0,117,1370 0/0:26,15:42:19.06:0,19,776 0/0:141,87:229:60.29:0,60,4114 0/0:95,73:168:57.67:0,58,2978 0/0:104,53:157:41.11:0,41,3148 0/0:70,49:121:99:0,141,2267 0/0:68,49:117:14.59:0,15,1888 0/0:47,18:65:30.18:0,30,1415 0/0:38,16:55:88.63:0,89,1267 0/0:31,12:43:42.86:0,43,956 0/0:27,14:41:2.71:1,0,835 0/0:28,21:49:1.05:6,0,752 0/1:37,15:53:26.16:26,0,1075 0/0:129,47:178:96.29:0,96,4015 0/0:41,27:68:34.17:0,34,1118 0/0:44,12:57:99:0,120,1358 0/0:25,15:41:12.77:0,13,618 0/0:54,21:75:42.75:0,43,1429 0/0:79,22:102:99:0,131,2294 0/1:46,21:67:22.19:22,0,1222 0/0:52,14:66:99:0,112,1457 0/0:134,82:217:99:0,213,4168 0/0:89,45:134:99:0,142,2676 0/0:83,55:138:99:0,165,2492 0/0:76,35:112:99:0,133,2288 0/0:22,6:28:14.79:0,15,639 0/0:45,19:66:99:0,129,1462 0/0:42,14:56:35.05:0,35,1328 0/0:38,18:56:57.06:0,57,1197 0/0:40,19:59:95.65:0,96,1324 0/0:50,24:74:99:0,120,1583 0/0:29,26:55:78.23:0,78,942 0/0:33,24:57:8.40:0,8,1027 0/0:35,12:47:13.69:0,14,1096 0/0:40,16:56:89.60:0,90,1239 0/1:50,27:77:44.56:45,0,1473 0/0:34,9:43:48.12:0,48,1037 0/0:32,22:55:6.52:0,7,930 0/0:45,16:62:99:0,120,1436 0/0:32,15:47:3.75:0,4,909 0/0:36,12:48:99:0,99,1165 19 49714497 . C T 16.74 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.590;DP=334;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5472;InbreedingCoeff=-0.0238;MQ=58.20;MQ0=0;MQRankSum=-0.380;QD=4.19;ReadPosRankSum=0.077 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,292 0/0:6,0:6:18.03:0,18,196 0/0:5,0:5:15.04:0,15,167 0/0:20,0:20:51.14:0,51,612 0/0:14,0:14:36.09:0,36,423 0/0:8,0:8:21.06:0,21,260 0/0:5,0:5:15.02:0,15,163 0/0:5,0:5:15.04:0,15,186 0/0:8,0:8:24.07:0,24,288 0/0:5,0:5:12.03:0,12,148 0/0:6,0:6:15.04:0,15,184 0/0:8,0:8:24.06:0,24,268 0/0:2,0:2:6.02:0,6,71 0/0:7,0:7:18.02:0,18,186 0/0:24,0:24:66.19:0,66,774 0/0:8,0:8:21.05:0,21,229 0/0:11,0:11:30.08:0,30,360 0/0:8,0:8:24.07:0,24,291 0/0:10,0:10:27.08:0,27,314 0/0:15,0:15:45.13:0,45,527 0/0:7,0:7:18.05:0,18,215 0/0:11,0:11:33.08:0,33,376 0/0:11,0:11:30.09:0,30,379 0/0:10,0:10:24.08:0,24,315 0/0:7,1:8:21.06:0,21,255 0/0:5,0:5:12.03:0,12,130 0/0:5,0:5:15.04:0,15,172 0/0:4,0:4:12.03:0,12,133 0/0:7,0:7:21.06:0,21,256 0/0:3,0:3:9.03:0,9,116 0/0:5,0:5:15.04:0,15,179 0/0:9,0:9:21.06:0,21,248 0/1:2,2:4:48.17:63,0,48 0/0:6,0:6:18.05:0,18,213 0/0:6,0:6:18.05:0,18,220 0/0:9,0:9:27.05:0,27,308 0/0:10,0:10:27.08:0,27,325 0/0:7,0:7:18.05:0,18,217 0/0:8,0:8:21.04:0,21,231 0/0:6,0:6:15.05:0,15,186 0/0:4,0:4:12.03:0,12,133 0/0:6,0:6:15.04:0,15,178 19 49812952 . G C 2035.16 . AC=3;AF=0.036;AN=84;BaseQRankSum=-5.547;DP=2598;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.5239;InbreedingCoeff=-0.0370;MQ=59.14;MQ0=0;MQRankSum=0.026;QD=13.75;ReadPosRankSum=-0.275 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,159,2015 0/0:70,0:70:99:0,199,2493 0/0:55,0:55:99:0,153,1964 0/0:87,0:87:99:0,247,3269 0/0:70,0:70:99:0,202,2710 0/0:68,0:68:99:0,193,2607 0/0:49,0:49:99:0,141,1866 0/0:42,0:42:99:0,117,1563 0/0:67,0:67:99:0,184,2359 0/0:40,0:40:99:0,111,1418 0/0:51,0:51:99:0,141,1793 0/0:70,0:70:99:0,196,2493 0/0:46,0:46:99:0,135,1715 0/0:51,0:51:99:0,150,1907 0/0:221,0:221:99:0,596,7569 0/0:46,0:46:99:0,138,1730 0/0:60,0:60:99:0,171,2137 0/0:64,0:64:99:0,181,2246 0/0:58,0:58:99:0,166,2130 0/0:94,0:94:99:0,253,3141 0/0:72,0:72:99:0,196,2497 0/0:44,0:44:99:0,129,1634 0/0:81,0:81:99:0,229,3015 0/0:60,0:60:99:0,169,2297 0/0:67,0:67:99:0,181,2399 0/0:37,0:38:99:0,105,1417 0/1:21,15:36:99:460,0,594 0/0:67,0:67:99:0,187,2395 0/1:32,27:59:99:780,0,1026 0/0:58,0:58:99:0,166,2089 0/0:48,0:48:99:0,135,1717 0/0:64,0:64:99:0,181,2293 0/0:45,0:45:99:0,132,1683 0/0:51,0:51:99:0,138,1760 0/1:25,28:53:99:871,0,711 0/0:53,0:53:99:0,141,1824 0/0:68,0:68:99:0,196,2472 0/0:58,0:58:99:0,163,2081 0/0:64,0:64:99:0,172,2196 0/0:61,0:61:99:0,175,2187 0/0:44,0:44:99:0,129,1638 0/0:40,1:41:79.57:0,80,1419 19 49839015 . T C 205130.63 . AC=68;AF=0.810;AN=84;BaseQRankSum=-26.946;DP=8420;DS;Dels=0.00;FS=1.071;HRun=0;HaplotypeScore=5.2646;InbreedingCoeff=0.0735;MQ=59.08;MQ0=1;MQRankSum=0.340;QD=25.67;ReadPosRankSum=-0.838 GT:AD:DP:GQ:PL 1/1:1,180:181:99:5609,472,0 1/1:0,171:171:99:5176,448,0 1/1:0,151:151:99:4650,412,0 1/1:1,249:250:99:8386,707,0 0/1:132,118:250:99:3320,0,3963 1/1:0,248:248:99:8305,680,0 1/1:0,232:232:99:7738,638,0 0/1:124,124:248:99:3510,0,3654 1/1:0,207:207:99:6332,550,0 0/1:102,86:188:99:2149,0,2916 1/1:0,146:146:99:4649,403,0 0/1:82,101:184:99:2667,0,2232 1/1:0,156:156:99:4852,427,0 0/1:102,76:179:99:1841,0,2774 1/1:1,249:250:99:7456,668,0 1/1:0,183:183:99:5843,508,0 1/1:0,190:191:99:5969,529,0 1/1:0,169:169:99:4955,436,0 1/1:0,250:250:99:7599,686,0 1/1:0,250:250:99:7887,698,0 1/1:0,250:250:99:7825,701,0 1/1:5,209:214:99:6334,438,0 1/1:1,249:250:99:8522,672,0 0/1:131,119:250:99:3359,0,3897 0/0:247,1:250:99:0,695,8580 1/1:1,216:217:99:7351,583,0 1/1:0,139:139:99:4175,361,0 1/1:2,148:150:99:4411,357,0 0/1:74,85:159:99:2140,0,1876 1/1:1,185:186:99:5476,475,0 1/1:0,158:158:99:4933,439,0 1/1:0,249:250:99:7821,695,0 1/1:0,238:238:99:7210,638,0 0/0:180,0:180:99:0,505,6080 0/1:94,121:215:99:3156,0,2629 0/1:79,76:155:99:1953,0,2191 0/1:123,125:250:99:3031,0,3366 0/1:97,93:190:99:2220,0,2615 1/1:0,142:142:99:4522,400,0 1/1:0,167:167:99:5191,460,0 1/1:3,143:146:99:4344,326,0 0/1:89,90:180:99:2263,0,2428 19 49869051 . T G 9863.18 . AC=14;AF=0.167;AN=84;BaseQRankSum=20.396;DP=2164;Dels=0.00;FS=10.949;HRun=1;HaplotypeScore=1.5858;InbreedingCoeff=-0.2000;MQ=58.69;MQ0=0;MQRankSum=5.915;QD=13.12;ReadPosRankSum=-1.109 GT:AD:DP:GQ:PL 0/1:22,15:37:99:426,0,655 0/1:31,16:47:99:466,0,862 0/1:17,16:33:99:426,0,494 0/1:38,34:72:99:1084,0,1054 0/0:65,0:65:99:0,193,2299 0/1:37,26:63:99:782,0,1053 0/0:48,0:48:99:0,132,1625 0/1:34,29:63:99:922,0,988 0/0:28,1:29:84.24:0,84,983 0/0:46,0:46:99:0,129,1499 0/0:42,0:42:99:0,108,1282 0/0:47,0:47:99:0,129,1543 0/0:25,0:25:72.22:0,72,856 0/0:39,0:39:99:0,108,1278 0/0:168,0:168:99:0,424,5103 0/0:39,0:39:99:0,108,1261 0/0:40,0:40:99:0,114,1346 0/1:17,18:35:99:499,0,466 0/1:41,29:70:99:875,0,1022 0/1:42,39:81:99:1087,0,1105 0/0:78,1:79:99:0,226,2688 0/0:47,0:48:99:0,138,1598 0/1:57,38:95:99:1060,0,1560 0/0:52,0:52:99:0,147,1773 0/0:50,0:50:99:0,138,1676 0/0:54,0:54:99:0,147,1756 0/1:14,15:29:99:484,0,396 0/1:22,21:43:99:679,0,562 0/1:24,16:40:99:454,0,676 0/0:38,0:38:99:0,105,1273 0/0:34,0:34:99:0,99,1181 0/0:68,0:68:99:0,184,2225 0/0:30,0:30:78.22:0,78,941 0/0:36,0:36:93.29:0,93,1141 0/1:22,22:44:99:617,0,625 0/0:42,0:42:99:0,123,1485 0/0:83,0:83:99:0,211,2538 0/0:54,0:54:99:0,150,1737 0/0:34,0:34:96.28:0,96,1134 0/0:43,0:43:99:0,123,1491 0/0:43,1:44:99:0,114,1365 0/0:35,0:35:99:0,102,1216 19 49901318 . T C 21570.81 . AC=35;AF=0.417;AN=84;BaseQRankSum=21.113;DP=1660;Dels=0.00;FS=6.783;HRun=0;HaplotypeScore=0.9222;InbreedingCoeff=-0.1197;MQ=59.21;MQ0=0;MQRankSum=0.839;QD=18.55;ReadPosRankSum=-1.084 GT:AD:DP:GQ:PL 0/1:18,14:32:99:396,0,531 0/1:12,14:26:99:360,0,330 0/1:9,6:15:99:178,0,277 0/1:37,37:74:99:1020,0,1016 0/1:29,36:65:99:1127,0,734 0/1:21,21:42:99:680,0,623 0/1:23,15:38:99:430,0,697 1/1:0,55:56:99:1978,147,0 0/0:30,0:30:84.24:0,84,1010 0/1:12,17:29:99:471,0,325 0/0:26,0:26:63.20:0,63,799 0/1:15,12:27:99:323,0,367 0/0:31,0:31:84.25:0,84,1018 0/1:14,11:25:99:342,0,378 0/0:114,0:114:99:0,256,3238 0/0:24,0:24:69.21:0,69,830 0/0:33,0:33:90.27:0,90,1099 0/1:5,16:21:99:453,0,124 0/1:27,23:50:99:646,0,774 0/1:36,45:81:99:1290,0,946 0/0:55,0:55:99:0,150,1837 0/0:27,1:28:41.26:0,41,883 1/1:1,82:83:99:2818,179,0 0/1:22,16:38:99:529,0,596 1/1:0,51:51:99:1718,126,0 0/0:45,1:46:74.35:0,74,1371 0/1:7,5:12:99:157,0,217 0/1:14,11:25:99:314,0,376 1/1:0,30:30:78.25:1022,78,0 0/0:26,0:26:69.21:0,69,862 0/1:15,10:25:99:295,0,445 0/1:37,38:75:99:1146,0,968 0/0:32,0:33:84.24:0,84,1015 1/1:0,30:30:84.26:1057,84,0 1/1:0,26:26:69.22:894,69,0 0/1:20,8:28:99:196,0,524 0/1:31,38:69:99:1018,0,700 0/1:20,20:40:99:534,0,578 0/0:18,1:19:18.02:0,18,566 0/0:32,0:32:78.25:0,78,993 0/1:25,2:27:6.39:6,0,701 0/1:15,8:23:99:172,0,448 19 49920719 . C T 310.87 . AC=2;AF=0.024;AN=82;BaseQRankSum=-2.178;DP=305;Dels=0.00;FS=1.171;HRun=0;HaplotypeScore=0.6111;InbreedingCoeff=-0.0553;MQ=58.26;MQ0=0;MQRankSum=0.358;QD=12.95;ReadPosRankSum=0.111 GT:AD:DP:GQ:PL 0/0:11,0:11:30.09:0,30,376 0/0:5,0:5:15.05:0,15,192 0/0:8,0:8:24.08:0,24,299 0/0:5,0:5:12.04:0,12,167 0/0:4,0:4:12.04:0,12,158 0/0:1,0:1:3.01:0,3,41 0/0:5,0:5:15.04:0,15,194 0/0:4,0:4:12.04:0,12,147 0/0:8,0:8:24.08:0,24,307 0/0:5,0:5:15.05:0,15,182 0/0:2,0:2:3.01:0,3,45 0/0:5,0:5:15.05:0,15,184 0/0:4,0:4:12.03:0,12,141 0/0:4,0:4:12.04:0,12,152 0/0:35,0:35:96.29:0,96,1181 0/0:7,0:7:21.06:0,21,254 0/0:5,0:5:15.04:0,15,171 0/0:6,0:6:15.04:0,15,183 0/0:8,0:8:18.06:0,18,231 0/0:26,0:26:72.21:0,72,870 0/1:5,11:16:99:314,0,146 0/1:5,3:8:58.06:58,0,160 0/0:4,0:4:12.04:0,12,151 0/0:3,0:3:9.03:0,9,113 ./. 0/0:1,0:1:3.01:0,3,39 0/0:8,0:8:21.07:0,21,268 0/0:9,0:9:27.08:0,27,333 0/0:12,0:12:27.09:0,27,358 0/0:10,0:10:27.09:0,27,351 0/0:3,0:3:6.01:0,6,66 0/0:13,0:13:33.10:0,33,416 0/0:6,0:6:15.05:0,15,195 0/0:7,0:7:21.07:0,21,265 0/0:4,0:4:12.04:0,12,146 0/0:5,0:5:15.05:0,15,194 0/0:10,0:10:30.10:0,30,380 0/0:4,0:4:12.04:0,12,141 0/0:7,0:7:21.07:0,21,260 0/0:8,0:8:24.08:0,24,298 0/0:2,0:2:6.02:0,6,73 0/0:7,0:7:21.07:0,21,267 19 49940038 . T C 60.62 . AC=3;AF=0.036;AN=84;BaseQRankSum=-8.894;DP=995;Dels=0.00;FS=23.693;HRun=2;HaplotypeScore=0.3509;InbreedingCoeff=-0.0667;MQ=58.13;MQ0=0;MQRankSum=0.068;QD=0.83;ReadPosRankSum=-6.241 GT:AD:DP:GQ:PL 0/0:21,3:25:54.15:0,54,622 0/0:14,7:21:17.42:0,17,401 0/0:11,2:13:21.06:0,21,254 0/0:42,10:52:65.58:0,66,977 0/0:35,10:45:49.80:0,50,819 0/0:27,13:40:14.95:0,15,696 0/0:23,6:29:54.11:0,54,599 0/0:19,8:27:41.69:0,42,446 0/0:13,5:18:33.09:0,33,372 0/1:9,5:14:12.55:13,0,153 0/0:15,0:15:33.05:0,33,341 0/0:17,4:21:16.35:0,16,360 0/0:17,9:26:36.07:0,36,384 0/1:12,7:20:91.97:92,0,203 0/1:25,14:39:23.62:24,0,584 0/0:15,5:20:33.09:0,33,374 0/0:16,4:20:42.12:0,42,486 0/0:15,6:21:39.04:0,39,402 0/0:22,6:28:51.10:0,51,572 0/0:20,3:23:39.12:0,39,475 0/0:10,3:13:30.08:0,30,343 0/0:18,4:22:45.12:0,45,511 0/0:42,19:61:99:0,105,1161 0/0:20,2:23:45.13:0,45,525 0/0:25,11:36:57.10:0,57,623 0/0:15,9:24:30.05:0,30,320 0/0:9,1:10:24.07:0,24,291 0/0:10,8:18:0.30:11,0,183 0/0:8,5:13:15.04:0,15,168 0/0:13,8:21:30.08:0,30,336 0/0:10,5:15:21.04:0,21,224 0/0:34,4:38:45.51:0,46,771 0/0:23,1:24:48.08:0,48,513 0/0:10,4:14:1.36:0,1,221 0/0:9,1:10:0.86:7,0,178 0/0:17,4:21:42.10:0,42,456 0/0:26,4:30:42.48:0,42,710 0/0:13,1:15:33.07:0,33,371 0/0:12,4:16:27.06:0,27,294 0/0:16,6:22:30.08:0,30,341 0/0:10,5:15:24.07:0,24,279 0/0:14,3:17:30.07:0,30,325 19 49964977 . C G 7597.25 . AC=55;AF=0.655;AN=84;BaseQRankSum=-10.818;DP=456;Dels=0.00;FS=5.600;HRun=0;HaplotypeScore=0.3197;InbreedingCoeff=-0.0350;MQ=57.71;MQ0=0;MQRankSum=2.890;QD=18.76;ReadPosRankSum=-1.825 GT:AD:DP:GQ:PL 1/1:0,5:5:15.04:163,15,0 1/1:0,3:3:9.02:96,9,0 0/1:2,2:4:50.24:51,0,50 0/1:21,12:33:99:319,0,560 0/1:14,23:37:99:697,0,426 0/1:5,8:13:99:205,0,164 0/1:7,6:13:99:166,0,205 0/0:9,0:9:24.07:0,24,307 1/1:0,2:2:6.01:62,6,0 1/1:0,5:5:15.04:170,15,0 1/1:0,8:8:21.05:248,21,0 0/1:8,2:10:38.44:38,0,259 0/1:2,2:4:51.03:51,0,55 1/1:0,9:9:24.05:260,24,0 0/1:16,11:27:99:232,0,484 1/1:0,18:18:51.14:576,51,0 0/0:4,0:4:12.04:0,12,148 0/1:2,4:6:55.09:93,0,55 0/0:15,0:15:36.11:0,36,461 0/1:4,8:12:99:226,0,118 0/0:18,0:18:45.13:0,45,556 0/1:4,1:5:14.58:15,0,134 0/1:22,7:29:99:165,0,660 0/1:4,4:8:99:119,0,138 0/1:13,7:20:99:176,0,399 1/1:0,19:19:45.11:558,45,0 1/1:0,5:5:15.04:165,15,0 1/1:0,7:7:21.06:236,21,0 1/1:0,5:5:12.04:145,12,0 1/1:0,2:2:6.02:69,6,0 1/1:0,18:18:51.12:560,51,0 0/1:3,11:14:75.97:277,0,76 1/1:0,5:5:15.04:160,15,0 0/0:5,0:5:15.05:0,15,195 1/1:0,3:3:9.02:95,9,0 0/1:1,4:5:24.28:120,0,24 0/1:7,6:13:99:147,0,185 0/1:2,3:5:45.97:74,0,46 0/1:2,2:4:23.47:23,0,67 1/1:0,8:8:21.06:243,21,0 1/1:0,13:13:33.09:380,33,0 1/1:0,8:8:18.04:219,18,0 19 49965173 . A T 3970.86 . AC=46;AF=0.561;AN=82;BaseQRankSum=-2.951;DP=277;Dels=0.00;FS=6.822;HRun=0;HaplotypeScore=0.1250;InbreedingCoeff=-0.2196;MQ=58.92;MQ0=0;MQRankSum=0.465;QD=16.55;ReadPosRankSum=-0.023 GT:AD:DP:GQ:PL 0/1:6,3:9:68.19:68,0,170 ./. 0/0:1,0:1:3.01:0,3,37 1/1:0,17:17:42.11:499,42,0 1/1:0,10:10:30.07:339,30,0 1/1:0,10:11:27.06:304,27,0 0/1:2,1:3:23.47:23,0,66 0/1:5,3:9:79.35:79,0,159 1/1:0,2:2:6.02:70,6,0 1/1:0,4:4:9:93,9,0 0/1:2,3:6:61.33:94,0,61 0/1:4,2:8:54.18:54,0,125 0/0:5,0:5:12.04:0,12,146 0/1:2,2:4:58.38:58,0,65 0/1:9,5:14:99:114,0,242 0/1:7,5:13:99:146,0,221 0/1:3,1:4:24.94:25,0,94 1/1:0,6:6:18.06:218,18,0 0/0:12,0:12:30.09:0,30,372 0/1:1,3:4:29.55:65,0,30 0/1:3,3:6:91.97:92,0,98 0/1:5,1:6:22.75:23,0,134 0/1:10,3:13:65:65,0,245 0/1:4,4:8:95.54:96,0,130 0/1:4,2:6:57.51:58,0,122 0/1:4,2:6:54.89:55,0,105 0/1:3,4:7:51.51:125,0,52 0/1:5,3:10:72.74:73,0,151 0/1:4,1:5:22.75:23,0,124 0/0:8,0:8:24.05:0,24,280 0/0:4,0:4:12.03:0,12,142 1/1:0,8:8:21.06:253,21,0 0/1:2,3:5:57.19:86,0,57 0/1:4,4:8:82.52:129,0,83 0/0:5,0:7:15.05:0,15,185 0/1:2,2:4:52.02:52,0,57 1/1:0,7:8:18.05:203,18,0 1/1:0,4:4:9.03:117,9,0 0/1:0,1:1:1.76:37,3,0 1/1:0,2:2:6:62,6,0 0/1:1,3:4:27.10:62,0,27 1/1:0,3:5:9.03:109,9,0 19 49965185 . G A 137.93 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.179;DP=255;Dels=0.00;FS=1.466;HRun=1;HaplotypeScore=0.1674;InbreedingCoeff=-0.0654;MQ=59.29;MQ0=0;MQRankSum=0.142;QD=6.57;ReadPosRankSum=-0.986 GT:AD:DP:GQ:PL 0/0:6,0:6:18.05:0,18,213 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,38 0/0:18,0:18:42.14:0,42,568 0/0:10,0:10:30.09:0,30,379 0/1:6,4:10:99:108,0,170 0/0:2,0:2:6.02:0,6,82 0/1:7,4:11:91.18:91,0,181 0/0:2,0:2:3.01:0,3,39 0/0:2,0:2:6.02:0,6,75 0/0:4,0:4:12.03:0,12,143 0/0:6,0:6:15.04:0,15,177 0/0:7,0:7:18.06:0,18,228 0/0:3,0:3:9.03:0,9,116 0/0:15,0:15:39.10:0,39,481 0/0:9,0:9:27.09:0,27,345 0/0:4,0:4:12.01:0,12,133 0/0:5,0:5:15.05:0,15,194 0/0:12,0:12:30.09:0,30,370 0/0:2,0:2:6.02:0,6,67 0/0:7,0:7:21.07:0,21,263 0/0:5,0:5:15.05:0,15,185 0/0:14,0:14:36.12:0,36,494 0/0:8,0:8:24.08:0,24,322 0/0:7,0:7:21.07:0,21,278 0/0:4,0:4:12.04:0,12,152 0/0:7,0:7:21.04:0,21,246 0/0:7,0:7:18.05:0,18,215 0/0:5,0:5:15.05:0,15,184 0/0:8,0:8:21.07:0,21,261 0/0:3,0:3:9.03:0,9,108 0/0:5,0:5:12.04:0,12,149 0/0:4,0:4:12.04:0,12,147 0/0:8,0:8:21.07:0,21,271 0/0:6,0:6:18.06:0,18,229 0/0:4,0:4:12.03:0,12,135 0/0:7,0:7:18.06:0,18,225 0/0:4,0:4:9.03:0,9,118 0/0:2,0:2:6.02:0,6,78 0/0:2,0:2:6.02:0,6,73 0/0:3,0:3:6.02:0,6,76 0/0:5,0:5:15.05:0,15,187 19 49965246 . T A 60.06 . AC=2;AF=0.024;AN=82;BaseQRankSum=-1.910;DP=184;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.1930;InbreedingCoeff=-0.0755;MQ=57.12;MQ0=0;MQRankSum=-1.272;QD=6.01;ReadPosRankSum=0.476 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,187 0/0:1,0:1:3.01:0,3,37 0/0:3,0:3:9.03:0,9,112 0/0:11,0:11:24.07:0,24,287 0/0:8,0:8:21.06:0,21,256 0/0:4,0:4:9.03:0,9,110 0/0:2,0:2:6.02:0,6,70 0/0:5,0:5:12.03:0,12,137 ./. 0/0:4,0:4:12.04:0,12,143 0/0:2,0:2:6.02:0,6,76 0/1:1,3:5:27.95:60,0,28 0/1:2,2:5:27.95:61,0,28 0/0:4,0:4:12.04:0,12,143 0/0:10,0:10:30.09:0,30,355 0/0:4,0:4:12.04:0,12,145 0/0:3,0:3:9.03:0,9,112 0/0:5,0:5:12.03:0,12,135 0/0:6,0:6:18.05:0,18,215 0/0:4,0:4:12.03:0,12,139 0/0:5,0:5:15.05:0,15,186 0/0:2,0:2:3.01:0,3,37 0/0:12,0:12:33.10:0,33,403 0/0:4,0:4:12.03:0,12,142 0/0:6,0:6:18.06:0,18,225 0/0:4,0:4:9.02:0,9,104 0/0:5,0:5:12.01:0,12,130 0/0:4,0:4:12.04:0,12,146 0/0:3,0:3:9.03:0,9,104 0/0:5,0:5:15.05:0,15,183 0/0:3,0:3:6.02:0,6,72 0/0:5,0:5:15.03:0,15,166 0/0:4,0:4:12.04:0,12,147 0/0:3,0:3:9.03:0,9,109 0/0:5,0:5:15.05:0,15,187 0/0:5,0:5:15.04:0,15,175 0/0:4,0:4:6.02:0,6,71 0/0:1,0:1:3.01:0,3,33 0/0:2,0:2:6.01:0,6,60 0/0:3,0:3:9.02:0,9,104 0/0:2,0:2:6.02:0,6,70 0/0:5,0:5:12.04:0,12,143 19 49965252 . G A 135.91 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.065;DP=176;Dels=0.00;FS=2.228;HRun=0;HaplotypeScore=0.5126;InbreedingCoeff=-0.0815;MQ=57.53;MQ0=0;MQRankSum=-0.595;QD=13.59;ReadPosRankSum=-1.607 GT:AD:DP:GQ:PL 0/0:4,0:4:12.03:0,12,131 0/0:1,0:1:3.01:0,3,32 0/0:3,0:3:9.02:0,9,102 0/0:10,0:10:27.08:0,27,342 0/0:6,0:6:18.06:0,18,226 0/0:4,0:4:12.03:0,12,145 0/0:2,0:2:6.02:0,6,80 0/0:5,0:5:9.03:0,9,113 0/0:1,0:1:3:0,3,28 0/0:4,0:4:12.04:0,12,144 0/0:3,0:3:9.02:0,9,100 0/1:1,5:6:21.93:123,0,22 0/1:1,3:4:24.97:74,0,25 0/0:3,0:3:9.03:0,9,108 0/0:11,0:11:30.09:0,30,347 0/0:4,0:4:12.03:0,12,138 0/0:2,0:2:6.02:0,6,71 0/0:4,0:4:12.03:0,12,141 0/0:6,0:6:18.05:0,18,216 0/0:4,0:4:9.02:0,9,103 0/0:4,0:4:12.04:0,12,146 0/0:2,0:2:3.01:0,3,38 0/0:12,0:12:33.10:0,33,426 0/0:5,0:5:15.05:0,15,198 0/0:6,0:6:18.06:0,18,230 0/0:3,0:3:9.03:0,9,116 0/0:4,0:4:9.03:0,9,113 0/0:4,0:4:12.04:0,12,147 0/0:2,0:2:6.02:0,6,68 0/0:8,0:8:24.07:0,24,274 0/0:3,0:3:6.02:0,6,74 0/0:5,0:5:15.04:0,15,169 0/0:4,0:4:12.03:0,12,142 0/0:2,0:2:6.02:0,6,74 0/0:5,0:5:15.05:0,15,186 0/0:4,0:4:12.03:0,12,136 0/0:2,0:3:6.01:0,6,66 0/0:1,0:1:3:0,3,27 0/0:2,0:2:6.01:0,6,63 0/0:3,0:3:9.03:0,9,103 0/0:3,0:3:6.01:0,6,63 0/0:4,0:4:9.03:0,9,110 19 49967396 . G C 433.27 . AC=1;AF=0.012;AN=84;BaseQRankSum=3.620;DP=859;Dels=0.00;FS=0.998;HRun=0;HaplotypeScore=0.9649;InbreedingCoeff=-0.0123;MQ=58.70;MQ0=0;MQRankSum=0.047;QD=13.98;ReadPosRankSum=-0.500 GT:AD:DP:GQ:PL 0/0:16,0:16:45.14:0,45,562 0/0:12,0:12:30.09:0,30,385 0/0:9,0:9:27.08:0,27,332 0/0:44,0:44:99:0,123,1602 0/0:37,0:37:93.27:0,93,1229 0/0:30,0:30:84.27:0,84,1110 0/1:16,15:31:99:479,0,434 0/0:25,0:27:66.22:0,66,878 0/0:17,0:17:42.13:0,42,520 0/0:15,0:15:33.10:0,33,418 0/0:12,0:12:30.09:0,30,367 0/0:15,0:16:45.09:0,45,523 0/0:13,0:13:33.10:0,33,419 0/0:18,0:18:48.15:0,48,594 0/0:38,0:38:93.28:0,93,1166 0/0:26,0:26:75.21:0,75,906 0/0:19,0:19:57.16:0,57,691 0/0:15,0:15:39.11:0,39,467 0/0:26,0:26:63.18:0,63,766 0/0:31,0:32:84.24:0,84,1017 0/0:30,0:30:81.24:0,81,1006 0/0:20,0:20:57.18:0,57,707 0/0:51,0:51:99:0,141,1813 0/0:23,0:23:60.19:0,60,804 0/0:27,0:27:78.25:0,78,1028 0/0:20,0:20:51.15:0,51,669 0/0:10,0:10:21.07:0,21,268 0/0:10,0:10:27.07:0,27,321 0/0:8,0:8:24.08:0,24,298 0/0:12,0:12:33.10:0,33,406 0/0:15,0:15:42.07:0,42,492 0/0:28,0:28:78.24:0,78,967 0/0:17,0:17:51.16:0,51,635 0/0:11,0:11:30.06:0,30,351 0/0:14,0:14:39.11:0,39,471 0/0:13,0:13:39.12:0,39,488 0/0:15,0:15:42.13:0,42,509 0/0:17,0:17:48.13:0,48,569 0/0:13,0:13:39.12:0,39,483 0/0:13,0:13:36.10:0,36,430 0/0:12,0:12:30.07:0,30,360 0/0:26,0:27:72.22:0,72,885 19 49983673 . C T 1397.27 . AC=12;AF=0.143;AN=84;BaseQRankSum=5.074;DP=394;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.5416;InbreedingCoeff=0.1785;MQ=58.72;MQ0=0;MQRankSum=0.655;QD=16.06;ReadPosRankSum=0.180 GT:AD:DP:GQ:PL 0/0:9,0:9:21.05:0,21,237 0/0:7,0:7:18.04:0,18,202 0/0:5,0:5:9.02:0,9,111 0/0:21,0:21:57.14:0,57,658 0/0:18,0:18:54.12:0,54,612 0/1:8,4:12:99:119,0,221 0/0:14,0:14:36.10:0,36,420 0/1:5,11:16:99:332,0,136 0/0:9,0:9:27.06:0,27,291 0/0:6,0:6:18.05:0,18,206 0/0:7,0:7:18.04:0,18,189 0/0:3,0:3:9.03:0,9,104 0/0:4,0:4:9.02:0,9,95 0/0:9,0:9:27.07:0,27,301 0/0:18,0:18:42.13:0,42,521 0/0:15,0:15:36.11:0,36,443 0/0:8,0:8:18.04:0,18,209 0/0:6,0:6:15.05:0,15,188 0/0:9,0:10:15.04:0,15,175 0/0:17,0:17:51.13:0,51,557 0/0:16,0:16:42.11:0,42,463 0/0:4,0:4:9.02:0,9,95 0/0:21,0:22:63.18:0,63,745 0/0:7,0:7:21.05:0,21,234 0/0:9,0:9:24.06:0,24,279 0/0:9,0:9:21.06:0,21,257 0/0:10,0:10:27.06:0,27,295 0/0:4,0:4:9.02:0,9,103 0/0:7,0:7:21.01:0,21,207 0/0:5,0:5:15.04:0,15,167 0/0:8,0:8:18.05:0,18,228 0/0:9,0:9:27.07:0,27,308 0/1:5,4:9:99:114,0,136 0/1:4,1:5:25.77:26,0,86 0/0:7,0:7:18.04:0,18,206 0/1:7,3:10:90.69:91,0,128 1/1:0,10:11:27.08:335,27,0 0/1:3,4:7:59.20:129,0,59 0/1:2,6:8:37.10:195,0,37 1/1:0,4:4:12.04:150,12,0 0/0:4,0:4:12.03:0,12,140 0/1:3,2:5:58.91:59,0,92 19 49993519 . G A 612.65 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.126;DP=2267;Dels=0.00;FS=10.258;HRun=0;HaplotypeScore=1.0411;InbreedingCoeff=-0.0120;MQ=58.56;MQ0=0;MQRankSum=1.647;QD=12.25;ReadPosRankSum=0.438 GT:AD:DP:GQ:PL 0/0:40,0:40:90.27:0,90,1176 0/0:44,0:44:99:0,123,1515 0/0:35,0:35:90.29:0,90,1148 0/0:84,0:84:99:0,214,2900 0/0:83,2:86:99:0,166,2728 0/0:71,0:71:99:0,184,2487 0/0:69,0:69:99:0,181,2418 0/0:61,0:61:99:0,150,2043 0/0:47,0:47:99:0,120,1556 0/0:49,0:49:99:0,120,1553 0/0:44,0:44:99:0,117,1495 0/0:45,0:45:99:0,117,1441 0/0:23,0:23:57.18:0,57,746 0/0:42,0:42:99:0,123,1496 0/0:166,0:166:99:0,418,5288 0/0:26,1:27:75.23:0,75,926 0/0:42,0:42:99:0,114,1454 0/0:46,0:46:99:0,120,1545 0/0:71,0:71:99:0,181,2265 0/0:80,0:80:99:0,196,2580 0/0:52,0:52:99:0,135,1642 0/0:36,0:36:93.26:0,93,1170 0/0:97,0:97:99:0,256,3453 0/0:55,0:55:99:0,132,1802 0/0:82,0:82:99:0,196,2687 0/1:27,23:50:99:659,0,780 0/0:22,0:22:60.18:0,60,758 0/0:34,0:34:96.28:0,96,1194 0/0:49,0:49:99:0,138,1726 0/0:52,0:52:99:0,135,1710 0/0:41,0:41:99:0,105,1342 0/0:54,0:54:99:0,150,1913 0/0:51,0:51:99:0,132,1707 0/0:44,0:44:99:0,120,1515 0/0:46,0:46:99:0,126,1567 0/0:36,0:36:99:0,102,1288 0/0:71,0:72:99:0,196,2365 0/0:50,0:50:99:0,120,1545 0/0:45,0:45:99:0,123,1545 0/0:38,0:38:99:0,99,1209 0/0:37,0:37:93.28:0,93,1167 0/0:52,0:52:99:0,135,1726 19 49993535 . C G 1144.66 . AC=3;AF=0.036;AN=84;BaseQRankSum=-3.518;DP=2265;Dels=0.00;FS=3.520;HRun=2;HaplotypeScore=1.0189;InbreedingCoeff=-0.0370;MQ=58.55;MQ0=0;MQRankSum=-0.870;QD=12.58;ReadPosRankSum=-0.411 GT:AD:DP:GQ:PL 0/0:37,0:37:93.30:0,93,1217 0/0:48,0:48:99:0,126,1627 0/0:40,0:40:99:0,105,1366 0/0:72,0:72:99:0,190,2608 0/0:91,0:91:99:0,214,2961 0/0:75,0:75:99:0,184,2504 0/0:69,0:69:99:0,181,2484 0/0:52,0:52:99:0,129,1765 0/0:44,0:44:99:0,120,1512 0/0:50,0:50:99:0,129,1655 0/0:45,0:45:99:0,123,1574 0/0:37,0:37:96.28:0,96,1212 0/1:9,15:24:99:419,0,216 0/0:40,0:40:99:0,111,1381 0/0:177,0:177:99:0,418,5510 0/0:31,0:31:84.27:0,84,1070 0/0:35,0:35:99:0,102,1290 0/0:41,0:41:99:0,105,1340 0/0:69,0:69:99:0,184,2326 0/0:82,0:83:99:0,190,2489 0/0:66,0:66:99:0,162,2068 0/0:37,0:37:90.27:0,90,1169 0/0:99,0:99:99:0,253,3477 0/0:48,0:48:99:0,120,1654 0/0:90,0:90:99:0,226,3112 0/0:51,0:51:99:0,129,1777 0/0:26,0:26:63.20:0,63,829 0/1:19,15:34:99:432,0,602 0/0:51,0:51:99:0,135,1711 0/0:48,0:48:99:0,135,1676 0/0:40,0:40:99:0,108,1370 0/0:56,0:56:99:0,163,2042 0/0:56,0:56:99:0,144,1846 0/0:42,0:42:99:0,108,1389 0/0:44,0:44:99:0,120,1507 0/0:30,0:30:84.27:0,84,1069 0/0:66,0:66:99:0,187,2284 0/0:50,0:50:99:0,132,1687 0/0:41,0:41:99:0,117,1489 0/0:43,0:43:99:0,123,1553 0/1:18,15:33:99:369,0,525 0/0:54,0:54:99:0,135,1753 19 49994470 . T A 18549.59 . AC=14;AF=0.167;AN=84;BaseQRankSum=-3.972;DP=5223;DS;Dels=0.00;FS=3.030;HRun=0;HaplotypeScore=2.9602;InbreedingCoeff=0.1429;MQ=59.26;MQ0=0;MQRankSum=9.678;QD=14.69;ReadPosRankSum=-3.475 GT:AD:DP:GQ:PL 0/0:113,0:113:99:0,301,3643 0/0:113,0:114:99:0,295,3612 0/0:93,0:93:99:0,253,3054 0/0:222,1:223:99:0,557,6845 0/0:184,1:185:99:0,448,5643 0/1:71,56:127:99:1543,0,1807 0/1:68,38:106:99:815,0,1935 0/1:79,56:135:99:1458,0,2113 0/0:103,0:103:99:0,280,3394 0/0:114,0:114:99:0,307,3686 0/0:121,0:121:99:0,313,3819 0/0:104,0:104:99:0,289,3474 0/0:81,0:82:99:0,205,2496 0/0:140,0:141:99:0,367,4404 0/0:241,0:242:99:0,599,7215 0/0:105,0:106:99:0,280,3423 0/0:113,0:113:99:0,322,3850 0/0:89,0:89:99:0,244,2898 0/0:165,0:166:99:0,433,5255 0/0:222,1:226:99:0,566,6876 0/0:175,0:180:99:0,436,5291 0/0:136,1:137:99:0,328,4276 0/0:194,0:194:99:0,497,6179 0/0:103,0:103:99:0,247,3141 0/0:126,0:127:99:0,334,4084 0/0:97,0:97:99:0,226,2859 0/0:81,0:81:99:0,226,2704 0/0:128,0:128:99:0,331,4057 0/0:96,0:96:99:0,268,3188 0/0:107,0:107:99:0,277,3354 0/0:89,0:89:99:0,226,2769 0/0:169,0:169:99:0,415,5117 0/1:45,48:93:99:1279,0,1191 0/1:61,42:104:99:1123,0,1674 0/0:117,0:117:99:0,310,3789 0/1:57,46:103:99:1169,0,1603 1/1:0,134:135:99:4008,334,0 0/1:56,40:97:99:1076,0,1558 0/1:53,37:90:99:959,0,1530 1/1:0,80:81:99:2651,226,0 0/1:43,38:83:99:995,0,1218 0/1:54,55:109:99:1474,0,1520 19 49994476 . T C 18838.95 . AC=14;AF=0.167;AN=84;BaseQRankSum=-6.715;DP=5236;DS;Dels=0.00;FS=6.219;HRun=0;HaplotypeScore=2.8407;InbreedingCoeff=0.1429;MQ=59.22;MQ0=0;MQRankSum=1.805;QD=14.59;ReadPosRankSum=-5.309 GT:AD:DP:GQ:PL 0/0:107,0:107:99:0,292,3517 0/0:113,0:113:99:0,298,3675 0/0:87,0:87:99:0,241,2891 0/0:226,1:227:99:0,560,6999 0/0:186,0:186:99:0,466,5875 0/1:76,59:136:99:1680,0,2111 0/1:69,41:110:99:949,0,1954 0/1:78,61:139:99:1662,0,1975 0/0:105,0:105:99:0,295,3532 0/0:113,0:113:99:0,313,3765 0/0:117,0:117:99:0,322,3872 0/0:96,0:96:99:0,262,3203 0/0:87,0:87:99:0,232,2825 0/0:137,0:137:99:0,361,4365 0/0:249,0:249:99:0,638,7778 0/0:106,0:106:99:0,289,3506 0/0:115,0:115:99:0,316,3812 0/0:86,0:87:99:0,235,2861 0/0:160,0:161:99:0,421,5108 0/0:222,0:223:99:0,563,6935 0/0:171,0:173:99:0,454,5560 0/0:144,1:145:99:0,338,4456 0/0:195,0:195:99:0,488,6141 0/0:104,0:104:99:0,247,3156 0/0:132,1:133:99:0,337,4180 0/0:101,0:101:99:0,244,3094 0/0:82,0:82:99:0,223,2718 0/0:126,0:126:99:0,328,4000 0/0:93,0:93:99:0,265,3174 0/0:108,0:109:99:0,295,3591 0/0:86,0:86:99:0,235,2836 0/0:167,0:167:99:0,421,5187 0/1:46,49:96:99:1258,0,1210 0/1:61,45:106:99:1201,0,1749 0/0:114,0:114:99:0,304,3746 0/1:58,52:110:99:1223,0,1598 1/1:0,130:130:99:3958,346,0 0/1:52,42:95:99:1136,0,1449 0/1:52,37:91:99:889,0,1536 1/1:0,77:77:99:2410,211,0 0/1:47,39:86:99:990,0,1311 0/1:59,56:115:99:1483,0,1663 19 50017538 . G C 67.26 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.662;DP=617;Dels=0.00;FS=1.744;HRun=0;HaplotypeScore=0.5667;InbreedingCoeff=-0.0148;MQ=58.76;MQ0=0;MQRankSum=1.207;QD=5.17;ReadPosRankSum=0.734 GT:AD:DP:GQ:PL 0/0:12,0:12:33.10:0,33,417 0/0:9,0:9:24.05:0,24,293 0/0:9,0:9:27.08:0,27,329 0/0:47,0:47:99:0,129,1715 0/0:22,0:22:57.17:0,57,746 0/0:25,0:25:69.22:0,69,914 0/0:12,0:12:36.12:0,36,480 0/0:17,0:17:45.15:0,45,616 0/0:19,0:19:51.15:0,51,624 0/1:8,5:13:99:113,0,227 0/0:13,0:13:39.12:0,39,473 0/0:3,0:3:9.03:0,9,108 0/0:9,0:9:24.08:0,24,306 0/0:18,0:18:51.16:0,51,631 0/0:40,0:40:99:0,108,1312 0/0:11,0:11:30.09:0,30,373 0/0:10,0:10:30.09:0,30,357 0/0:14,0:14:39.10:0,39,463 0/0:18,0:18:54.17:0,54,664 0/0:20,0:20:57.16:0,57,692 0/0:19,0:19:51.15:0,51,627 0/0:10,0:10:27.08:0,27,340 0/0:23,0:23:60.20:0,60,828 0/0:22,0:22:57.19:0,57,785 0/0:17,0:17:45.15:0,45,600 0/0:20,0:20:57.19:0,57,761 0/0:14,0:14:39.12:0,39,492 0/0:6,0:6:18.05:0,18,220 0/0:9,0:9:21.07:0,21,279 0/0:9,0:9:24.07:0,24,305 0/0:9,0:9:27.07:0,27,315 0/0:12,0:12:33.10:0,33,411 0/0:13,0:13:36.11:0,36,450 0/0:6,0:6:15.04:0,15,182 0/0:11,0:11:27.09:0,27,348 0/0:11,0:11:33.10:0,33,398 0/0:14,0:14:39.10:0,39,470 0/0:11,0:11:30.09:0,30,373 0/0:11,0:11:30.10:0,30,384 0/0:9,0:9:27.09:0,27,338 0/0:15,0:15:39.12:0,39,488 0/0:5,0:5:15.05:0,15,185 19 50017724 . C T 2376.12 . AC=12;AF=0.143;AN=84;BaseQRankSum=-0.023;DP=803;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.7183;InbreedingCoeff=0.0236;MQ=58.46;MQ0=0;MQRankSum=1.549;QD=13.06;ReadPosRankSum=0.754 GT:AD:DP:GQ:PL 0/0:14,0:14:39.10:0,39,432 0/0:16,0:17:45.10:0,45,504 0/0:7,0:7:15.05:0,15,188 0/0:59,0:59:99:0,147,1824 0/0:53,0:54:99:0,144,1817 0/1:14,24:38:99:570,0,356 0/0:30,0:30:78.21:0,78,930 0/1:17,11:28:99:210,0,486 0/0:15,0:15:39.10:0,39,445 0/0:13,0:13:33.10:0,33,394 0/0:12,0:12:33.09:0,33,386 0/0:10,0:10:24.08:0,24,303 0/0:14,0:14:39.10:0,39,455 0/0:9,0:9:27.07:0,27,298 0/0:30,0:31:66.18:0,66,810 0/0:16,0:16:48.13:0,48,538 0/0:10,0:10:27.08:0,27,313 0/0:9,0:9:24.07:0,24,290 0/0:16,0:16:36.10:0,36,429 0/0:21,0:21:51.08:0,51,569 0/1:15,15:30:99:408,0,394 0/1:7,10:17:99:239,0,154 0/0:61,0:61:99:0,138,1762 0/0:35,0:35:90.24:0,90,1112 0/0:34,1:35:78.22:0,78,984 0/0:20,0:20:51.16:0,51,638 0/0:10,0:10:24.04:0,24,266 0/0:4,0:4:12.03:0,12,136 0/0:8,0:8:21.06:0,21,262 0/1:5,11:16:99:299,0,115 0/1:6,2:8:50.70:51,0,187 0/0:25,0:25:66.18:0,66,763 0/0:15,0:15:36.07:0,36,409 0/1:4,2:6:58.07:58,0,82 0/0:9,0:9:27.07:0,27,304 0/1:2,5:7:40.04:150,0,40 0/0:17,0:17:42.10:0,42,469 0/0:8,0:8:24.02:0,24,248 0/0:17,0:17:42.09:0,42,479 1/1:0,9:9:24.07:292,24,0 0/1:8,4:12:99:102,0,254 0/1:6,5:11:99:147,0,174 19 50046365 . T C 2904.70 . AC=8;AF=0.095;AN=84;BaseQRankSum=-1.289;DP=1531;Dels=0.00;FS=2.866;HRun=0;HaplotypeScore=0.9987;InbreedingCoeff=0.1710;MQ=58.08;MQ0=1;MQRankSum=1.188;QD=15.53;ReadPosRankSum=-0.922 GT:AD:DP:GQ:PL 0/0:24,0:24:63.19:0,63,768 0/0:30,0:30:84.25:0,84,1008 0/0:26,0:26:72.21:0,72,863 0/0:70,0:70:99:0,184,2232 0/0:53,0:53:99:0,147,1748 0/0:46,0:46:99:0,117,1435 0/0:31,0:31:87.24:0,87,1048 0/0:46,0:46:99:0,114,1415 0/0:31,0:31:81.24:0,81,972 0/0:25,0:25:72.22:0,72,862 0/0:29,0:29:78.23:0,78,939 0/0:24,0:24:72.19:0,72,850 0/0:14,0:14:39.12:0,39,467 0/0:30,0:30:81.24:0,81,975 0/0:111,0:111:99:0,283,3407 0/0:34,0:34:99:0,99,1147 0/0:30,0:30:84.26:0,84,1026 0/0:28,0:28:78.24:0,78,938 0/0:49,0:49:99:0,138,1653 0/0:54,0:54:99:0,138,1653 0/0:48,0:48:99:0,132,1574 0/0:32,0:32:87.26:0,87,1044 0/0:46,0:46:99:0,120,1448 0/0:36,0:36:99:0,102,1184 0/0:50,0:50:99:0,126,1572 0/0:42,0:42:93.28:0,93,1166 0/0:26,0:26:66.20:0,66,808 0/0:33,0:33:90.27:0,90,1074 0/0:21,0:21:54.16:0,54,659 0/1:10,11:21:99:322,0,292 0/1:12,16:28:99:399,0,307 0/0:48,0:48:99:0,126,1531 0/0:29,0:29:84.25:0,84,983 0/1:17,10:27:99:201,0,486 0/0:27,0:27:72.21:0,72,867 0/1:14,10:24:99:253,0,385 0/0:55,0:55:99:0,138,1705 0/0:40,0:40:99:0,102,1239 0/0:26,0:26:69.18:0,69,838 1/1:0,30:30:84.25:1009,84,0 0/1:9,14:23:99:414,0,232 0/1:17,17:34:99:435,0,489 19 50046437 . C T 2340.49 . AC=8;AF=0.095;AN=84;BaseQRankSum=3.812;DP=1236;Dels=0.00;FS=2.128;HRun=0;HaplotypeScore=0.8482;InbreedingCoeff=0.1710;MQ=58.62;MQ0=0;MQRankSum=1.055;QD=14.63;ReadPosRankSum=-0.058 GT:AD:DP:GQ:PL 0/0:33,0:33:84.22:0,84,966 0/0:14,0:15:42.11:0,42,454 0/0:20,0:20:54.11:0,54,585 0/0:49,0:49:99:0,132,1580 0/0:31,0:31:90.24:0,90,1078 0/0:26,0:26:75.22:0,75,913 0/0:25,0:25:69.20:0,69,832 0/0:23,0:23:66.20:0,66,785 0/0:21,0:21:60.16:0,60,677 0/0:25,0:25:60.15:0,60,680 0/0:19,0:19:51.14:0,51,592 0/0:16,0:16:45.11:0,45,495 0/0:16,0:16:39.11:0,39,468 0/0:35,0:35:93.25:0,93,1057 0/0:95,0:96:99:0,262,2992 0/0:31,0:31:93.22:0,93,1014 0/0:41,0:41:99:0,111,1316 0/0:19,0:19:57.15:0,57,619 0/0:37,0:37:96.23:0,96,1053 0/0:45,0:45:99:0,123,1391 0/0:49,0:49:99:0,126,1457 0/0:27,0:27:78.18:0,78,850 0/0:54,0:54:99:0,153,1908 0/0:22,0:22:60.17:0,60,719 0/0:26,0:26:75.23:0,75,904 0/0:25,0:25:72.20:0,72,850 0/0:22,0:22:63.14:0,63,684 0/0:22,0:22:54.14:0,54,603 0/0:19,0:19:54.14:0,54,609 0/1:14,12:26:99:341,0,372 0/1:11,11:22:99:290,0,318 0/0:44,0:44:99:0,108,1294 0/0:34,0:34:93.25:0,93,1071 0/1:15,9:24:99:214,0,404 0/0:28,0:28:78.21:0,78,885 0/1:15,11:26:99:290,0,416 0/0:39,0:39:99:0,114,1255 0/0:21,0:21:60.16:0,60,672 0/0:21,0:21:63.16:0,63,712 1/1:0,21:21:63.19:746,63,0 0/1:8,12:20:99:362,0,216 0/1:13,8:21:99:225,0,350 19 50172310 . G A 22.10 . AC=3;AF=0.036;AN=84;BaseQRankSum=-10.207;DP=1151;Dels=0.00;FS=106.063;HRun=2;HaplotypeScore=0.5648;InbreedingCoeff=-0.0412;MQ=58.74;MQ0=0;MQRankSum=-0.715;QD=0.45;ReadPosRankSum=-7.302 GT:AD:DP:GQ:PL 0/0:20,1:21:54.14:0,54,636 0/0:10,2:12:21.05:0,21,252 0/0:25,0:25:69.20:0,69,845 0/0:59,4:63:99:0,123,1869 0/0:46,1:47:99:0,111,1467 0/0:36,4:40:70.57:0,71,1150 0/0:28,3:31:66.21:0,66,890 0/0:37,3:40:98.76:0,99,1238 0/0:18,1:19:48.13:0,48,580 0/0:12,0:12:36.11:0,36,445 0/0:19,4:23:19.79:0,20,582 0/0:20,2:22:54.11:0,54,625 0/0:14,2:16:12.34:0,12,370 0/0:18,2:20:48.11:0,48,577 0/0:48,4:53:90.87:0,91,1469 0/0:19,1:20:51.14:0,51,612 0/0:13,1:14:4.56:0,5,380 0/0:18,4:22:42.13:0,42,528 0/0:22,4:26:48.11:0,48,567 0/0:29,4:33:72.06:0,72,845 0/0:34,4:38:84.18:0,84,965 0/0:23,4:27:69.19:0,69,824 0/0:53,3:56:99:0,121,1792 0/0:36,0:36:93.27:0,93,1159 0/0:46,3:49:99:0,123,1559 0/0:32,1:33:87.28:0,87,1136 0/1:7,4:12:38.30:38,0,153 0/0:24,1:25:51.15:0,51,631 0/0:12,1:13:36.10:0,36,443 0/0:16,3:19:16.78:0,17,537 0/0:20,4:24:54.11:0,54,640 0/0:23,2:25:36.48:0,36,709 0/0:28,2:30:63.18:0,63,753 0/0:24,2:26:54.17:0,54,673 0/1:15,4:19:14.09:14,0,388 0/0:22,1:23:54.13:0,54,646 0/0:34,4:39:87.65:0,88,964 0/1:15,3:18:42.49:42,0,431 0/0:18,2:20:23.44:0,23,520 0/0:21,1:22:57.13:0,57,649 0/0:13,1:14:39.11:0,39,473 0/0:23,1:24:57.14:0,57,683 19 50216050 . C A 418.11 . AC=1;AF=0.012;AN=84;BaseQRankSum=-5.807;DP=2148;Dels=0.00;FS=6.751;HRun=0;HaplotypeScore=1.3597;InbreedingCoeff=-0.0120;MQ=59.24;MQ0=0;MQRankSum=-0.559;QD=9.72;ReadPosRankSum=-1.248 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,135,1681 0/0:63,0:63:99:0,178,2228 0/0:23,0:23:69.21:0,69,849 0/0:84,0:84:99:0,247,3257 0/0:78,0:78:99:0,232,3107 0/0:61,0:61:99:0,172,2275 0/0:54,0:54:99:0,147,1971 0/0:54,0:54:99:0,159,2128 0/0:37,0:37:99:0,111,1398 0/0:39,0:39:99:0,111,1385 0/0:32,0:32:93.29:0,93,1166 0/0:37,0:37:99:0,99,1268 0/0:33,0:33:96.29:0,96,1205 0/0:39,0:39:99:0,111,1404 0/0:124,0:124:99:0,358,4452 0/0:37,0:37:99:0,108,1341 0/0:48,0:48:99:0,138,1751 0/0:47,0:47:99:0,138,1745 0/0:69,0:69:99:0,187,2302 0/0:58,0:59:99:0,165,2059 0/0:51,0:51:99:0,141,1785 0/0:37,1:38:99:0,111,1404 0/0:80,0:80:99:0,229,3054 0/0:48,0:48:99:0,135,1805 0/0:56,0:56:99:0,160,2125 0/0:54,0:54:99:0,156,2033 0/0:46,0:46:99:0,135,1693 0/0:44,0:44:99:0,123,1594 0/0:34,0:34:99:0,102,1268 0/0:53,0:53:99:0,159,1955 0/0:33,0:33:93.29:0,93,1179 0/0:65,0:65:99:0,181,2279 0/0:58,0:58:99:0,159,1996 0/0:52,0:52:99:0,153,1900 0/1:25,18:43:99:464,0,785 0/0:41,0:41:99:0,117,1498 0/0:67,0:68:99:0,193,2373 0/0:36,0:36:99:0,108,1360 0/0:51,0:51:99:0,150,1917 0/0:49,0:49:99:0,147,1840 0/0:42,0:42:99:0,123,1542 0/0:42,0:42:99:0,126,1599 19 50266409 . G C 455.46 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.087;DP=3252;DS;Dels=0.00;FS=10.544;HRun=0;HaplotypeScore=1.6971;InbreedingCoeff=-0.0120;MQ=59.36;MQ0=0;MQRankSum=0.663;QD=10.12;ReadPosRankSum=-1.265 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,147,1826 0/0:44,0:44:99:0,126,1562 0/0:50,0:50:99:0,147,1835 0/0:221,0:221:99:0,632,8226 0/0:204,0:205:99:0,584,7711 0/0:164,0:164:99:0,448,5883 0/0:115,0:115:99:0,322,4305 0/0:133,0:133:99:0,379,4944 0/0:52,0:52:99:0,150,1845 0/0:40,0:40:99:0,114,1433 0/0:44,0:44:99:0,126,1554 0/0:39,0:39:99:0,117,1457 0/1:27,18:45:99:502,0,832 0/0:49,0:49:99:0,144,1780 0/0:175,0:176:99:0,487,5998 0/0:52,0:52:99:0,144,1796 0/0:49,0:49:99:0,135,1667 0/0:44,0:44:99:0,126,1550 0/0:71,0:71:99:0,202,2438 0/0:105,0:105:99:0,283,3561 0/0:74,0:74:99:0,187,2278 0/0:63,0:63:99:0,187,2283 0/0:209,0:210:99:0,593,7803 0/0:93,0:93:99:0,259,3433 0/0:124,0:125:99:0,361,4792 0/0:115,0:116:99:0,322,4225 0/0:48,0:48:99:0,138,1708 0/0:52,0:52:99:0,150,1867 0/0:45,0:45:99:0,123,1511 0/0:49,0:49:99:0,141,1749 0/0:37,0:37:99:0,105,1302 0/0:78,0:78:99:0,217,2700 0/0:61,0:61:99:0,175,2190 0/0:47,0:47:99:0,132,1654 0/0:50,0:50:99:0,135,1691 0/0:48,0:48:99:0,141,1716 0/0:58,0:58:99:0,165,1963 0/0:57,0:58:99:0,153,1912 0/0:46,0:47:99:0,132,1648 0/0:47,0:47:99:0,138,1672 0/0:37,0:37:99:0,105,1304 0/0:60,0:60:99:0,178,2188 19 50302065 . C T 3.80 . AC=1;AF=0.012;AN=84;BaseQRankSum=-0.078;DP=500;Dels=0.00;FS=2.960;HRun=0;HaplotypeScore=0.3071;InbreedingCoeff=-0.0154;MQ=58.47;MQ0=0;MQRankSum=0.018;QD=0.48;ReadPosRankSum=-1.451 GT:AD:DP:GQ:PL 0/0:9,0:9:24.05:0,24,263 0/0:10,0:10:24.07:0,24,294 0/0:7,0:7:18.05:0,18,212 0/0:23,0:23:60.18:0,60,750 0/0:18,0:18:39.12:0,39,509 0/0:5,0:5:12.04:0,12,145 0/0:9,0:9:24.08:0,24,322 0/0:8,0:8:24.08:0,24,303 0/0:6,0:6:15.05:0,15,194 0/0:10,0:10:24.08:0,24,305 0/0:14,0:14:39.09:0,39,453 0/0:9,0:9:24.05:0,24,261 0/0:8,0:8:21.05:0,21,228 0/1:6,2:8:47.64:48,0,161 0/0:31,0:31:81.20:0,81,936 0/0:10,0:10:27.06:0,27,307 0/0:11,0:11:30.06:0,30,330 0/0:7,0:7:18.05:0,18,221 0/0:19,0:19:51.10:0,51,566 0/0:29,0:29:69.16:0,69,785 0/0:20,0:20:42.13:0,42,546 0/0:10,0:10:27.07:0,27,314 0/0:22,0:22:60.19:0,60,749 0/0:7,0:7:21.07:0,21,269 0/0:13,0:13:33.10:0,33,413 0/0:7,0:7:15.05:0,15,203 0/0:6,0:6:18.05:0,18,199 0/0:11,0:11:30.09:0,30,364 0/0:8,0:8:21.06:0,21,260 0/0:9,0:9:24.07:0,24,295 0/0:8,0:8:21.06:0,21,241 0/0:21,0:21:54.15:0,54,643 0/0:14,0:14:39.11:0,39,455 0/0:7,0:7:18.06:0,18,225 0/0:8,0:8:24.05:0,24,269 0/0:8,0:8:24.06:0,24,274 0/0:22,0:22:51.13:0,51,583 0/0:11,0:11:27.07:0,27,328 0/0:10,0:10:27.06:0,27,299 0/0:6,0:6:18.05:0,18,215 0/0:10,0:10:30.05:0,30,320 0/0:11,0:11:33.09:0,33,366 19 50310482 . ACAG A 34.54 . AC=6;AF=0.071;AN=84;BaseQRankSum=3.240;DP=1137;FS=12.911;HRun=0;HaplotypeScore=103.9521;InbreedingCoeff=-0.0962;MQ=58.74;MQ0=0;MQRankSum=0.247;QD=0.18;ReadPosRankSum=2.115 GT:AD:DP:GQ:PL 0/1:22,1:23:14.44:14,0,444 0/0:20,0:20:18.06:0,18,316 0/0:15,0:15:15.04:0,15,250 0/0:88,0:88:69.15:0,69,993 0/1:59,2:61:22.33:22,0,568 0/0:49,0:44:51.60:0,52,646 0/1:35,0:31:41.33:41,0,381 0/0:50,0:47:24.56:0,25,773 0/0:14,0:14:24.08:0,24,439 0/0:12,0:12:21.06:0,21,315 0/0:12,0:12:18.05:0,18,337 0/0:14,0:14:21.06:0,21,374 0/1:9,2:11:26.50:26,0,224 0/0:15,0:15:21.06:0,21,344 0/0:64,1:65:39.72:0,40,1169 0/0:19,0:19:24.02:0,24,335 0/0:19,0:19:35.89:0,36,543 0/0:19,0:19:21.05:0,21,315 0/0:32,0:32:23.19:0,23,321 0/0:37,1:37:0.62:0,1,696 0/0:27,0:27:33.06:0,33,553 0/0:27,0:27:50.89:0,51,698 0/0:60,0:60:63.16:0,63,1025 0/0:38,0:36:51.13:0,51,712 0/0:49,0:46:48.14:0,48,729 0/0:35,0:33:1.65:3,0,372 0/0:15,0:15:12.02:0,12,179 0/0:14,0:14:24.07:0,24,391 0/0:12,0:12:18.05:0,18,278 0/0:12,0:12:15.05:0,15,259 0/0:10,0:10:27.09:0,27,502 0/1:45,3:48:20.41:20,0,1211 0/0:23,0:23:29.92:0,30,477 0/1:13,2:15:20.46:20,0,323 0/0:19,0:19:39.12:0,39,747 0/0:18,0:18:24.05:0,24,304 0/0:29,0:29:24.97:0,25,472 0/0:12,0:12:21.03:0,21,330 0/0:15,0:15:27.08:0,27,444 0/0:15,0:15:30.10:0,30,590 0/0:15,0:15:18.02:0,18,267 0/0:18,0:18:15.05:0,15,285 19 50312653 . C T 208.36 . AC=8;AF=0.125;AN=64;BaseQRankSum=-3.424;DP=87;Dels=0.00;FS=3.161;HRun=0;HaplotypeScore=0.3688;InbreedingCoeff=0.2547;MQ=58.00;MQ0=0;MQRankSum=0.194;QD=16.03;ReadPosRankSum=0.668 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,38 0/0:1,0:1:3:0,3,26 ./. 0/0:3,0:3:9.03:0,9,111 0/0:1,0:1:3.01:0,3,42 ./. ./. 0/0:2,0:2:6.02:0,6,76 ./. 0/0:2,0:2:6.02:0,6,71 1/1:0,2:2:6.01:62,6,0 ./. 0/1:1,2:3:28.78:52,0,29 0/0:4,0:4:9.03:0,9,116 0/0:4,0:4:12.04:0,12,144 0/0:3,0:3:9.03:0,9,116 1/1:0,2:2:6.02:68,6,0 0/1:2,2:4:28.77:63,0,29 0/0:2,0:2:6.02:0,6,77 0/0:5,0:5:12.04:0,12,157 0/0:10,0:10:24.07:0,24,289 0/0:4,0:4:12.03:0,12,146 0/1:0,1:1:1.76:35,3,0 0/0:1,0:1:3.01:0,3,41 0/0:2,0:2:6.02:0,6,75 0/0:1,0:1:3.01:0,3,39 ./. 0/0:2,0:2:6.02:0,6,72 0/0:1,0:1:3.01:0,3,38 0/0:5,0:5:12.04:0,12,150 0/0:3,0:3:9.03:0,9,115 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6.02:0,6,75 ./. 0/0:1,0:1:3.01:0,3,37 0/0:6,0:6:9.03:0,9,113 0/1:0,1:1:1.76:34,3,0 0/0:4,0:4:9.03:0,9,121 ./. ./. ./. 19 50322482 . C G 1024.11 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.511;DP=2527;Dels=0.00;FS=0.594;HRun=1;HaplotypeScore=1.8675;InbreedingCoeff=-0.0244;MQ=58.20;MQ0=0;MQRankSum=0.481;QD=12.49;ReadPosRankSum=-0.221 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,126,1488 0/0:60,0:60:99:0,153,1795 0/0:42,0:42:99:0,117,1383 0/0:128,0:128:99:0,325,4056 0/0:88,0:89:99:0,247,3074 0/0:90,0:90:99:0,232,2838 0/0:71,0:71:99:0,175,2174 0/0:72,0:72:99:0,187,2345 0/0:42,0:42:99:0,117,1391 0/0:51,0:51:99:0,132,1585 0/0:60,0:61:99:0,156,1860 0/0:47,0:48:99:0,120,1456 0/0:44,0:44:99:0,114,1322 0/0:48,0:49:99:0,138,1645 0/0:180,0:180:99:0,412,5059 0/0:42,0:42:99:0,123,1452 0/0:52,0:52:99:0,141,1636 0/0:44,0:44:99:0,111,1344 0/0:73,0:73:99:0,199,2297 0/0:73,0:73:99:0,172,2093 0/0:57,0:57:99:0,156,1848 0/0:51,0:51:99:0,138,1593 0/0:140,0:140:99:0,355,4551 0/0:51,0:51:99:0,126,1587 0/0:63,0:63:99:0,165,2078 0/0:72,0:72:99:0,190,2380 0/0:24,0:24:66.16:0,66,750 0/0:47,0:47:99:0,117,1390 0/0:42,0:42:99:0,105,1265 0/0:40,0:40:99:0,108,1185 0/0:34,0:34:96.26:0,96,1118 0/0:71,0:71:99:0,172,2128 0/0:59,0:59:99:0,168,1979 0/0:48,0:48:99:0,132,1571 0/0:40,0:40:99:0,105,1289 0/0:53,0:53:99:0,147,1716 0/0:62,0:63:99:0,159,1866 0/0:44,0:44:99:0,117,1366 0/0:47,0:47:99:0,120,1426 0/1:24,26:50:99:694,0,584 0/0:43,0:43:99:0,111,1269 0/1:16,16:32:99:393,0,422 19 50333382 . G C 22.24 . 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G A 107.61 . AC=1;AF=0.012;AN=84;BaseQRankSum=1.663;DP=485;Dels=0.00;FS=1.824;HRun=0;HaplotypeScore=0.2940;InbreedingCoeff=-0.0194;MQ=58.28;MQ0=0;MQRankSum=-0.053;QD=10.76;ReadPosRankSum=-0.345 GT:AD:DP:GQ:PL 0/0:9,0:9:24.05:0,24,262 0/0:9,0:9:24.05:0,24,254 0/0:5,0:5:15.04:0,15,165 0/0:25,0:26:66.18:0,66,790 0/0:29,0:30:72.15:0,72,828 0/0:19,0:19:48.13:0,48,554 0/0:15,0:15:33.09:0,33,384 0/0:17,0:17:45.12:0,45,534 0/0:12,0:12:30.06:0,30,323 0/0:6,0:6:15.04:0,15,164 0/0:11,0:11:33.09:0,33,380 0/0:6,0:6:15.04:0,15,164 0/1:5,5:10:99:154,0,129 0/0:5,0:5:15.04:0,15,180 0/0:23,0:23:57.15:0,57,643 0/0:8,0:8:21.06:0,21,242 0/0:6,0:6:15.04:0,15,163 0/0:5,0:5:15.05:0,15,196 0/0:10,0:11:27.07:0,27,301 0/0:12,0:12:33.09:0,33,389 0/0:10,0:10:27.07:0,27,304 0/0:11,0:11:24.07:0,24,270 0/0:30,0:31:84.21:0,84,964 0/0:16,0:17:42.12:0,42,501 0/0:25,0:27:63.16:0,63,764 0/0:16,0:16:42.11:0,42,503 0/0:9,0:9:24.07:0,24,269 0/0:8,0:8:24.04:0,24,268 0/0:5,0:5:12.03:0,12,125 0/0:9,0:9:27.07:0,27,307 0/0:9,0:9:21.05:0,21,218 0/0:9,0:9:24.07:0,24,278 0/0:10,0:10:24.07:0,24,277 0/0:4,0:4:12.02:0,12,129 0/0:13,0:13:30.07:0,30,344 0/0:6,0:6:18.05:0,18,209 0/0:10,0:12:27.07:0,27,294 0/0:6,0:6:15.03:0,15,155 0/0:4,0:4:9.03:0,9,108 0/0:14,0:14:39.07:0,39,410 0/0:5,0:5:15.03:0,15,155 0/0:4,0:4:12.03:0,12,138 19 50339573 . C T 243.59 . AC=2;AF=0.024;AN=84;BaseQRankSum=-1.741;DP=424;Dels=0.00;FS=1.387;HRun=1;HaplotypeScore=0.3091;InbreedingCoeff=-0.0374;MQ=58.39;MQ0=0;MQRankSum=0.145;QD=16.24;ReadPosRankSum=1.239 GT:AD:DP:GQ:PL 0/0:3,0:3:9.02:0,9,104 0/0:9,0:9:24.07:0,24,296 0/0:4,0:4:12.04:0,12,151 0/0:29,0:29:78.21:0,78,990 0/0:24,0:24:69.22:0,69,904 0/0:15,0:15:42.13:0,42,539 0/0:13,0:13:36.12:0,36,466 0/0:11,0:11:33.10:0,33,417 0/0:16,0:16:45.13:0,45,551 0/0:5,0:5:12.04:0,12,149 0/0:9,0:9:27.08:0,27,318 0/0:5,0:5:15.05:0,15,188 0/0:6,0:6:15.05:0,15,196 0/0:6,0:6:18.05:0,18,218 0/0:24,0:24:66.16:0,66,763 0/0:9,0:9:24.07:0,24,284 0/0:5,0:5:12.03:0,12,140 0/0:2,0:2:6.02:0,6,74 0/0:7,0:7:18.03:0,18,212 0/0:13,0:13:36.11:0,36,445 0/0:8,0:8:24.08:0,24,308 0/0:12,0:12:33.10:0,33,420 0/0:27,0:27:75.22:0,75,946 0/0:12,0:12:33.08:0,33,400 0/0:26,0:26:75.23:0,75,946 0/0:14,0:15:36.11:0,36,453 0/0:8,0:8:24.08:0,24,301 0/0:9,0:9:27.06:0,27,306 0/0:6,0:6:18.05:0,18,218 0/0:8,0:8:24.07:0,24,296 0/0:7,0:7:18.03:0,18,195 0/0:12,0:12:36.10:0,36,414 0/0:7,0:7:21.06:0,21,257 0/0:4,0:4:9.03:0,9,107 0/0:8,0:8:24.07:0,24,294 0/0:4,0:4:12.03:0,12,135 0/0:7,0:7:15.04:0,15,180 0/0:4,0:4:12.03:0,12,141 0/0:7,0:7:21.07:0,21,267 0/1:2,7:9:50.07:225,0,50 0/0:3,0:3:9.02:0,9,103 0/1:3,3:6:69.75:81,0,70 19 50360989 . A G 4254.76 . AC=9;AF=0.107;AN=84;BaseQRankSum=11.895;DP=1341;Dels=0.00;FS=11.958;HRun=1;HaplotypeScore=1.0300;InbreedingCoeff=-0.1200;MQ=59.13;MQ0=0;MQRankSum=0.060;QD=13.21;ReadPosRankSum=3.501 GT:AD:DP:GQ:PL 0/0:27,0:27:63.20:0,63,807 0/0:28,0:28:72.22:0,72,892 0/0:21,0:21:54.17:0,54,673 0/1:32,26:58:99:790,0,804 0/1:15,15:30:99:393,0,450 0/0:23,0:23:54.18:0,54,716 0/0:32,0:32:81.25:0,81,1026 0/0:43,0:43:99:0,99,1279 0/0:20,0:20:57.17:0,57,680 0/0:27,0:27:69.21:0,69,843 0/0:21,0:21:51.16:0,51,632 0/0:30,0:30:72.21:0,72,893 0/0:20,0:20:51.14:0,51,620 0/0:24,0:24:69.21:0,69,848 0/0:99,0:102:99:0,232,2891 0/1:19,11:30:99:307,0,569 0/0:40,0:40:99:0,99,1238 0/0:24,0:24:66.20:0,66,811 0/0:45,0:45:99:0,114,1417 0/0:52,0:53:99:0,120,1541 0/0:61,0:62:99:0,144,1808 0/1:12,18:30:99:412,0,339 0/1:20,31:51:99:908,0,515 0/1:11,7:18:99:236,0,274 0/0:30,0:30:72.22:0,72,911 0/1:8,14:22:99:456,0,205 0/0:14,0:14:39.11:0,39,469 0/0:22,0:22:63.20:0,63,775 0/0:25,0:25:72.20:0,72,841 0/0:26,0:26:66.20:0,66,804 0/0:32,0:32:78.24:0,78,988 0/1:24,18:42:99:450,0,655 0/1:29,12:41:99:303,0,755 0/0:22,0:22:66.20:0,66,802 0/0:19,0:19:51.16:0,51,636 0/0:31,0:31:72.23:0,72,919 0/0:35,0:35:87.25:0,87,1053 0/0:23,0:23:57.18:0,57,716 0/0:28,0:28:75.23:0,75,921 0/0:22,0:22:54.16:0,54,666 0/0:26,0:26:72.20:0,72,858 0/0:22,0:22:54.17:0,54,673 19 50361038 . A G 215.67 . AC=8;AF=0.095;AN=84;BaseQRankSum=-18.403;DP=1047;Dels=0.00;FS=707.847;HRun=2;HaplotypeScore=0.4745;InbreedingCoeff=-0.1421;MQ=58.59;MQ0=0;MQRankSum=-0.541;QD=1.31;ReadPosRankSum=-15.350 GT:AD:DP:GQ:PL 0/0:12,2:14:36.11:0,36,448 0/1:14,7:21:12.08:12,0,456 0/0:12,6:18:35.48:0,35,411 0/0:28,9:37:56.51:0,57,969 0/0:17,4:21:15.66:0,16,562 0/0:24,2:26:62:0,62,776 0/0:19,3:22:51.16:0,51,657 0/0:20,7:27:59.98:0,60,746 0/0:13,5:18:1.21:5,0,393 0/0:15,2:17:19.45:0,19,499 0/1:9,6:15:29.38:29,0,236 0/0:14,3:17:14.25:0,14,433 0/0:11,4:15:1.55:0,2,344 0/0:20,4:24:29.77:0,30,588 0/0:52,14:66:38.76:0,39,1664 0/1:12,12:24:99:167,0,318 0/0:26,6:32:46.17:0,46,836 0/0:10,3:13:4.44:0,4,322 0/0:34,7:41:65.70:0,66,1118 0/0:35,10:45:47.77:0,48,1099 0/0:29,6:35:24.50:0,24,941 0/0:22,7:29:46.52:0,47,789 0/0:33,8:42:93.29:0,93,1185 0/0:13,4:17:39.11:0,39,476 0/0:20,4:24:59.84:0,60,711 0/0:19,8:27:54.17:0,54,690 0/1:13,4:17:19.96:20,0,394 0/0:17,5:22:28.05:0,28,541 0/0:16,0:16:42.13:0,42,521 0/0:15,4:19:42.13:0,42,529 0/0:20,6:26:4.90:0,5,623 0/0:27,8:36:50.98:0,51,868 0/0:29,13:42:35.87:0,36,935 0/0:12,7:19:12.23:0,12,381 0/0:14,5:19:11.87:0,12,432 0/1:18,10:28:28.43:28,0,550 0/0:26,4:30:40.57:0,41,793 0/1:12,5:17:11.16:11,0,404 0/0:15,3:18:15.65:0,16,528 0/1:15,7:22:8.32:8,0,457 0/1:14,7:21:48.15:48,0,464 0/0:7,1:8:0.86:7,0,200 19 50404939 . T G 1301.41 . AC=29;AF=0.453;AN=64;BaseQRankSum=6.102;DP=112;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2284;InbreedingCoeff=0.2690;MQ=58.11;MQ0=0;MQRankSum=0.642;QD=21.69;ReadPosRankSum=1.728 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:39,3,0 0/0:3,0:3:6.02:0,6,80 0/0:1,0:1:2.99:0,3,23 1/1:0,3:3:6.02:85,6,0 ./. ./. ./. ./. 0/1:2,2:4:35.74:56,0,36 0/0:3,0:3:9.03:0,9,107 0/1:2,4:6:32.73:110,0,33 ./. 1/1:0,1:1:3.01:39,3,0 1/1:0,6:6:15.05:201,15,0 0/0:8,0:8:21.06:0,21,242 0/1:3,1:4:27.28:27,0,98 0/0:3,0:3:9.02:0,9,100 1/1:0,3:3:6.02:83,6,0 0/1:3,1:4:24.41:24,0,72 0/0:11,0:11:27.08:0,27,333 0/1:1,2:3:27.10:63,0,27 0/1:1,4:5:22.31:110,0,22 ./. ./. ./. ./. 1/1:0,1:1:3.01:39,3,0 1/1:0,4:4:12.04:143,12,0 0/0:1,0:1:3.01:0,3,32 1/1:0,2:2:3.01:45,3,0 0/1:0,1:1:1.76:37,3,0 1/1:0,7:7:18.06:226,18,0 0/1:1,1:2:30.11:31,0,30 0/0:3,0:3:9.03:0,9,102 0/0:2,0:2:3.01:0,3,45 0/0:4,0:4:9.03:0,9,119 0/0:2,0:2:6.02:0,6,71 0/0:8,0:8:21.06:0,21,258 0/1:0,1:1:1.76:38,3,0 0/0:3,0:3:9.03:0,9,106 1/1:0,2:2:6.02:69,6,0 ./. 19 50462298 . G C 17880.34 . AC=24;AF=0.286;AN=84;BaseQRankSum=10.101;DP=5753;DS;Dels=0.00;FS=146.135;HRun=1;HaplotypeScore=2.2725;InbreedingCoeff=0.1833;MQ=28.23;MQ0=1557;MQRankSum=-9.555;QD=6.90;ReadPosRankSum=2.891 GT:AD:DP:GQ:PL 0/1:71,36:107:99:396,0,1297 0/0:133,0:133:99:0,292,3376 0/0:140,0:140:99:0,259,2953 1/1:22,115:137:99:2609,235,0 1/1:15,111:126:99:2647,241,0 0/1:139,46:185:99:742,0,2790 0/1:97,25:122:99:283,0,1530 0/0:193,0:193:99:0,397,4787 0/0:129,0:129:99:0,223,2548 0/0:108,0:108:99:0,214,2419 0/0:145,0:145:99:0,277,3147 0/1:72,17:89:99:241,0,1068 0/1:68,17:86:99:196,0,1228 0/0:114,0:114:99:0,217,2508 0/0:246,0:246:99:0,541,6285 0/1:74,20:94:99:337,0,1304 0/0:116,0:116:99:0,223,2539 0/0:131,0:131:99:0,265,3048 0/1:144,44:191:99:542,0,2198 0/1:142,67:209:99:778,0,2290 1/1:38,99:137:99:2183,204,0 0/1:76,43:119:99:655,0,1199 1/1:34,99:133:99:1796,130,0 0/1:86,45:132:99:743,0,1950 0/0:182,0:182:99:0,379,4590 1/1:34,89:123:71.38:1754,71,0 0/0:97,0:97:99:0,189,2150 0/0:108,0:108:99:0,232,2604 0/0:124,0:124:99:0,223,2569 0/1:83,27:110:99:343,0,1283 0/0:116,0:117:99:0,277,3262 0/1:169,66:235:99:751,0,2887 0/1:100,39:139:99:475,0,1932 0/0:122,0:123:99:0,247,2847 0/0:126,0:126:99:0,229,2561 0/0:140,0:140:99:0,268,3023 0/0:224,1:225:99:0,454,5126 0/0:120,0:120:99:0,238,2702 0/0:130,0:130:99:0,247,2788 0/0:112,0:112:99:0,195,2169 0/0:103,0:103:99:0,198,2234 0/1:87,30:117:99:408,0,1568 19 50484234 . G A 659.54 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.426;DP=619;Dels=0.00;FS=0.788;HRun=0;HaplotypeScore=0.4497;InbreedingCoeff=-0.0396;MQ=59.28;MQ0=0;MQRankSum=0.217;QD=12.21;ReadPosRankSum=-0.567 GT:AD:DP:GQ:PL 0/0:8,0:8:24.07:0,24,283 0/0:11,0:11:30.07:0,30,320 0/0:21,0:21:57.15:0,57,645 0/0:25,0:26:63.19:0,63,790 0/0:22,0:22:48.15:0,48,636 0/0:16,0:16:39.12:0,39,504 0/0:15,0:16:39.12:0,39,509 0/0:22,0:22:51.16:0,51,655 0/0:11,0:11:27.08:0,27,323 0/0:12,0:12:33.04:0,33,357 0/0:14,0:14:36.10:0,36,432 0/0:6,0:6:15.04:0,15,168 0/0:10,0:10:30.08:0,30,342 0/0:8,0:8:24.06:0,24,273 0/0:36,1:37:75.79:0,76,1155 0/0:10,0:10:27.08:0,27,314 0/0:9,0:9:27.08:0,27,316 0/0:12,0:12:36.10:0,36,415 0/0:19,0:19:51.15:0,51,604 0/0:23,0:23:63.17:0,63,732 0/1:12,14:26:99:383,0,298 0/1:7,6:13:99:165,0,165 0/0:27,0:27:66.21:0,66,851 0/0:14,0:14:42.13:0,42,520 0/0:13,0:13:30.10:0,30,400 0/0:8,0:8:18.05:0,18,215 0/0:7,0:7:18.05:0,18,220 0/0:11,0:11:33.09:0,33,371 0/0:9,0:9:24.07:0,24,284 0/0:11,0:11:33.09:0,33,373 0/0:14,0:14:42.11:0,42,468 0/0:25,0:25:66.19:0,66,791 0/0:19,0:19:48.13:0,48,546 0/0:12,0:12:30.08:0,30,331 0/0:10,0:10:27.07:0,27,306 0/0:13,0:13:33.09:0,33,394 0/0:15,0:15:36.10:0,36,418 0/1:8,7:15:99:187,0,185 0/0:3,0:3:9.02:0,9,98 0/0:12,0:12:36.08:0,36,388 0/0:15,0:15:39.11:0,39,464 0/0:14,0:14:36.10:0,36,431 19 50491738 . G A 956.30 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.292;DP=2466;Dels=0.00;FS=6.426;HRun=0;HaplotypeScore=2.5320;InbreedingCoeff=-0.0120;MQ=58.97;MQ0=1;MQRankSum=0.045;QD=14.94;ReadPosRankSum=-0.949 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,120,1474 0/0:39,0:39:99:0,108,1281 0/0:50,0:50:99:0,135,1660 0/0:142,0:142:99:0,364,4701 0/0:118,0:118:99:0,301,3980 0/0:84,0:84:99:0,229,2906 0/0:74,0:74:99:0,202,2649 0/0:61,0:61:99:0,168,2142 0/0:50,0:51:99:0,141,1726 0/0:49,0:49:99:0,144,1751 0/0:43,0:43:99:0,126,1558 0/0:46,0:46:99:0,132,1631 0/0:40,0:40:99:0,111,1362 0/0:38,0:38:90.29:0,90,1173 0/0:137,0:137:99:0,376,4489 0/0:55,0:55:99:0,156,1918 0/0:50,0:51:99:0,144,1750 0/0:40,0:40:99:0,102,1307 0/0:73,0:74:99:0,199,2393 0/0:64,0:65:99:0,159,2017 0/0:59,1:62:99:0,115,1784 0/0:44,0:44:99:0,120,1479 0/0:124,0:124:99:0,325,4198 0/0:64,0:64:99:0,175,2243 0/0:81,0:81:99:0,217,2820 0/0:75,0:75:99:0,196,2584 0/0:35,0:35:96.29:0,96,1195 0/0:43,0:43:99:0,123,1507 0/0:36,0:36:96.30:0,96,1205 0/0:34,0:34:96.30:0,96,1211 0/0:30,0:30:84.26:0,84,1038 0/1:30,34:64:99:1003,0,848 0/0:42,0:42:99:0,114,1394 0/0:49,0:49:99:0,129,1627 0/0:51,0:51:99:0,141,1742 0/0:49,0:49:99:0,138,1711 0/0:63,0:64:99:0,172,2086 0/0:41,0:41:99:0,111,1405 0/0:44,0:44:99:0,117,1426 0/0:38,0:38:99:0,105,1285 0/0:52,0:52:99:0,144,1775 0/0:45,0:46:99:0,129,1631 19 50493004 . C G 919.44 . AC=20;AF=0.238;AN=84;BaseQRankSum=-7.579;DP=999;Dels=0.00;FS=159.513;HRun=2;HaplotypeScore=0.9953;InbreedingCoeff=-0.3335;MQ=58.55;MQ0=0;MQRankSum=0.424;QD=2.02;ReadPosRankSum=-8.067 GT:AD:DP:GQ:PL 0/0:10,4:14:9.03:0,9,104 0/1:13,6:19:36.01:36,0,259 0/0:12,6:19:24.04:0,24,262 0/1:16,23:40:9.40:9,0,185 0/1:17,21:39:35.17:35,0,168 0/0:19,8:28:3.34:0,3,218 0/0:16,9:26:6.02:0,6,80 0/1:18,4:22:0.65:1,0,209 0/1:15,8:23:71.34:71,0,278 0/0:19,3:22:27.01:0,27,267 0/0:15,7:22:21.01:0,21,199 0/1:15,10:25:14.14:14,0,356 0/1:10,5:15:14.46:14,0,142 0/1:12,3:15:5.62:6,0,189 0/0:41,20:61:6.45:0,6,892 0/1:10,8:18:67.75:68,0,166 0/1:15,9:24:32.99:33,0,308 0/1:7,13:20:64.91:65,0,68 0/1:8,10:18:81.33:81,0,204 0/0:34,11:45:35.43:0,35,569 0/1:19,11:31:99:129,0,170 0/0:11,6:17:15.02:0,15,157 0/1:15,17:33:99:134,0,205 0/0:10,3:13:6.01:0,6,61 0/0:25,4:29:30.05:0,30,332 0/0:12,9:21:9.02:0,9,96 0/0:11,1:12:21.05:0,21,230 0/1:14,9:24:54.90:55,0,145 0/1:5,8:13:36.35:36,0,59 0/0:14,5:19:2.36:0,2,205 0/1:11,6:17:86.38:86,0,142 0/0:21,11:32:18.41:0,18,413 0/0:18,4:22:33.03:0,33,325 0/1:7,2:9:20.56:21,0,133 0/0:14,4:18:15.04:0,15,164 0/0:21,5:27:4.41:0,4,284 0/1:11,17:28:99:135,0,124 0/0:22,9:32:33.53:0,34,353 0/0:15,7:22:24.04:0,24,251 0/0:21,7:28:33.01:0,33,315 0/1:16,7:23:49.54:50,0,249 0/0:9,5:14:21.01:0,21,204 19 50760716 . C G 7952.20 . AC=33;AF=0.393;AN=84;BaseQRankSum=-7.652;DP=973;Dels=0.00;FS=27.293;HRun=1;HaplotypeScore=1.2296;InbreedingCoeff=-0.1481;MQ=59.02;MQ0=0;MQRankSum=0.864;QD=14.41;ReadPosRankSum=-1.657 GT:AD:DP:GQ:PL 0/1:16,5:21:99:131,0,456 0/1:10,7:17:99:173,0,310 0/1:14,9:23:99:258,0,381 0/1:7,3:10:94.56:95,0,186 0/1:8,4:12:97.48:97,0,223 0/1:9,2:11:47.53:48,0,299 0/0:12,0:12:27.09:0,27,370 0/1:5,8:13:99:187,0,141 0/0:20,0:20:54.17:0,54,688 0/1:12,7:19:99:143,0,380 0/1:7,9:16:99:215,0,188 1/1:0,14:14:39.09:466,39,0 1/1:0,17:17:42.14:545,42,0 0/1:9,7:16:99:205,0,288 0/0:94,0:94:99:0,244,3077 0/1:14,10:24:99:309,0,382 0/0:23,0:23:54.17:0,54,706 0/0:27,0:27:75.24:0,75,951 0/0:37,0:37:99:0,105,1280 0/0:52,0:52:99:0,129,1669 0/1:18,15:33:99:301,0,521 1/1:0,21:21:57.17:698,57,0 0/0:22,0:22:45.15:0,45,639 0/0:15,0:15:36.12:0,36,496 0/0:10,0:10:30.10:0,30,416 0/0:15,0:15:36.12:0,36,502 1/1:0,15:15:39.12:494,39,0 0/1:6,8:14:99:258,0,174 0/1:10,8:18:99:208,0,297 0/1:14,7:21:99:168,0,438 1/1:0,21:21:63.17:730,63,0 0/1:29,10:39:99:272,0,777 0/1:8,7:15:99:189,0,239 0/1:17,13:30:99:349,0,554 0/1:12,9:21:99:228,0,312 0/1:13,8:21:99:231,0,341 0/0:38,0:38:99:0,99,1247 0/0:35,0:35:93.29:0,93,1189 0/1:8,10:18:99:261,0,241 0/1:12,13:25:99:327,0,365 0/0:21,0:21:60.19:0,60,753 0/1:15,12:27:99:367,0,431 19 50771609 . G A 7558.60 . AC=54;AF=0.643;AN=84;BaseQRankSum=-11.844;DP=378;Dels=0.00;FS=6.757;HRun=0;HaplotypeScore=0.3217;InbreedingCoeff=-0.1365;MQ=57.88;MQ0=0;MQRankSum=0.572;QD=21.41;ReadPosRankSum=0.181 GT:AD:DP:GQ:PL 1/1:0,16:16:42.13:510,42,0 0/1:5,4:10:99:113,0,135 0/1:6,1:7:18.07:18,0,182 0/1:5,7:12:99:207,0,168 0/1:3,4:7:94.88:114,0,95 1/1:0,2:2:6.02:70,6,0 1/1:0,4:4:6.02:71,6,0 1/1:0,4:4:12.04:144,12,0 1/1:0,11:11:33.10:381,33,0 0/1:2,4:6:62.11:97,0,62 1/1:0,2:2:6.02:70,6,0 0/0:5,0:5:15.05:0,15,189 0/0:7,0:7:18.06:0,18,228 0/1:2,2:4:60.22:60,0,66 1/1:0,33:33:84.22:979,84,0 1/1:0,11:11:33.09:378,33,0 0/1:1,7:8:1.62:224,0,2 0/1:1,5:6:25.76:111,0,26 0/1:8,5:13:99:141,0,237 0/1:11,7:18:99:155,0,332 0/1:7,9:16:99:228,0,233 0/0:7,0:7:21.07:0,21,269 0/1:6,4:10:99:106,0,173 1/1:0,5:5:15.04:167,15,0 1/1:0,6:6:12.04:163,12,0 1/1:0,6:6:18.06:218,18,0 0/1:3,6:9:91.66:152,0,92 1/1:0,12:12:36.11:417,36,0 0/1:5,2:7:44.71:45,0,155 0/1:4,4:8:94.11:94,0,126 0/0:6,0:6:18.05:0,18,221 0/1:7,11:18:99:325,0,204 1/1:0,14:14:42.12:480,42,0 0/1:9,4:13:99:103,0,289 0/1:5,4:9:95.76:96,0,162 0/1:4,8:12:92.39:194,0,92 1/1:0,16:16:42.10:498,42,0 0/1:2,2:4:57.57:58,0,64 1/1:0,4:4:12.03:134,12,0 0/1:0,1:1:1.76:32,3,0 1/1:0,6:6:15.04:176,15,0 0/1:2,1:3:28.33:28,0,33 19 50812304 . C G 31.98 . AC=3;AF=0.036;AN=84;BaseQRankSum=-8.310;DP=1194;Dels=0.00;FS=31.264;HRun=1;HaplotypeScore=0.5780;InbreedingCoeff=-0.0684;MQ=58.32;MQ0=0;MQRankSum=-0.697;QD=0.34;ReadPosRankSum=-5.633 GT:AD:DP:GQ:PL 0/0:16,6:22:21.07:0,21,263 0/0:13,2:15:8.36:0,8,311 0/0:14,4:18:36.08:0,36,411 0/0:38,10:48:72.17:0,72,857 0/0:42,6:48:50.44:0,50,806 0/0:28,7:35:42.10:0,42,506 0/0:20,6:26:39.10:0,39,461 0/0:17,5:22:24.07:0,24,310 0/0:24,5:29:45:0,45,471 0/1:21,10:31:33.66:34,0,259 0/0:22,5:27:51.10:0,51,561 0/0:24,2:26:54.10:0,54,608 0/0:20,5:25:15.43:0,15,433 0/0:16,5:21:24.06:0,24,292 0/0:39,12:52:43.48:0,43,729 0/0:24,4:28:51.10:0,51,561 0/0:17,8:25:3.38:0,3,256 0/0:16,7:23:33.05:0,33,366 0/0:23,8:31:0.94:6,0,492 0/0:36,6:43:75.20:0,75,899 0/1:26,14:40:51.63:52,0,654 0/0:30,5:35:54.08:0,54,592 0/0:39,9:48:44.48:0,44,760 0/0:10,2:12:12.03:0,12,148 0/0:20,1:21:33.09:0,33,388 0/0:25,2:27:57.15:0,57,700 0/0:16,2:18:36.10:0,36,421 0/0:27,4:31:42.07:0,42,468 0/0:18,3:21:21.05:0,21,239 0/0:23,3:26:15.42:0,15,415 0/0:15,5:20:0.33:0,0,223 0/0:41,7:48:63.15:0,63,730 0/0:35,7:42:30.59:0,31,596 0/0:11,8:19:2.49:0,2,323 0/1:15,9:24:19.33:19,0,278 0/0:18,4:22:36.05:0,36,389 0/0:22,10:32:39.11:0,39,455 0/0:13,6:19:7.39:0,7,292 0/0:22,5:27:22.45:0,22,505 0/0:14,5:19:27.04:0,27,311 0/0:15,6:21:27.06:0,27,310 0/0:23,4:27:45.07:0,45,474 19 50861851 . G C 365.58 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.176;DP=473;Dels=0.00;FS=2.708;HRun=0;HaplotypeScore=0.3085;InbreedingCoeff=-0.0288;MQ=59.11;MQ0=0;MQRankSum=-0.309;QD=13.06;ReadPosRankSum=-0.396 GT:AD:DP:GQ:PL 0/0:10,0:10:27.09:0,27,346 0/0:14,0:14:42.13:0,42,524 0/0:5,0:5:15.05:0,15,193 0/0:29,0:29:72.23:0,72,961 0/0:16,0:16:45.15:0,45,607 0/1:8,6:14:99:161,0,212 0/0:11,0:11:30.09:0,30,390 0/1:6,8:14:99:267,0,171 0/0:4,0:4:12.03:0,12,140 0/0:13,0:13:33.08:0,33,395 0/0:8,0:8:21.07:0,21,276 0/0:5,0:5:15.05:0,15,192 0/0:5,0:5:15.05:0,15,189 0/0:12,0:12:33.11:0,33,419 0/0:23,0:23:60.16:0,60,737 0/0:11,0:11:33.11:0,33,426 0/0:10,0:10:27.09:0,27,343 0/0:8,0:8:24.07:0,24,293 0/0:9,0:9:24.08:0,24,300 0/0:13,0:13:39.13:0,39,507 0/0:11,0:11:33.10:0,33,399 0/0:4,0:4:12.04:0,12,148 0/0:31,0:31:87.28:0,87,1172 0/0:11,0:11:30.10:0,30,401 0/0:20,0:20:48.16:0,48,655 0/0:15,0:15:42.14:0,42,574 0/0:8,0:8:21.07:0,21,279 0/0:7,0:7:21.06:0,21,254 0/0:7,0:7:21.06:0,21,261 0/0:7,0:7:18.05:0,18,214 0/0:6,0:6:18.05:0,18,213 0/0:12,0:12:33.10:0,33,417 0/0:13,0:13:39.12:0,39,494 0/0:12,0:12:33.11:0,33,422 0/0:13,0:13:39.12:0,39,484 0/0:5,0:5:15.05:0,15,188 0/0:14,0:14:33.10:0,33,410 0/0:9,0:9:27.09:0,27,345 0/0:9,0:9:24.08:0,24,313 0/0:10,0:10:30.09:0,30,376 0/0:7,0:7:18.06:0,18,230 0/0:8,0:8:21.07:0,21,273 19 50862768 . C T 1139.22 . AC=4;AF=0.048;AN=84;BaseQRankSum=-6.735;DP=1610;Dels=0.00;FS=2.044;HRun=0;HaplotypeScore=2.2378;InbreedingCoeff=-0.0500;MQ=52.30;MQ0=21;MQRankSum=4.954;QD=9.74;ReadPosRankSum=-0.169 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,108,1308 0/0:29,0:29:72.21:0,72,907 0/0:25,0:25:72.20:0,72,875 0/0:80,0:80:99:0,223,2897 0/0:71,0:71:99:0,184,2379 0/0:33,0:33:93.30:0,93,1216 0/0:47,0:47:99:0,126,1641 0/0:45,0:45:99:0,126,1652 0/0:27,0:27:66.20:0,66,825 0/0:14,0:14:39.10:0,39,456 0/0:22,0:22:60.15:0,60,709 0/0:25,0:25:69.20:0,69,839 0/1:12,7:19:99:155,0,360 0/0:29,0:29:84.26:0,84,1021 0/0:96,0:97:99:0,232,2880 0/0:35,0:35:96.27:0,96,1180 0/1:12,16:28:99:466,0,350 0/0:23,0:23:63.20:0,63,783 0/0:49,0:49:99:0,120,1502 0/0:63,0:63:99:0,165,2054 0/0:59,0:60:99:0,153,1859 0/0:38,0:38:99:0,114,1421 0/0:77,0:77:99:0,208,2649 0/1:11,13:24:99:366,0,355 0/1:36,10:46:99:239,0,1068 0/0:42,0:42:99:0,117,1508 0/0:23,0:23:69.20:0,69,829 0/0:31,1:32:59.49:0,59,918 0/0:21,0:21:63.19:0,63,771 0/0:36,0:36:93.23:0,93,1095 0/0:27,0:27:72.18:0,72,858 0/0:54,0:54:99:0,135,1702 0/0:50,0:50:99:0,135,1684 0/0:23,0:23:66.18:0,66,799 0/0:28,0:28:84.26:0,84,1026 0/0:28,0:28:84.26:0,84,1038 0/0:45,0:46:99:0,120,1460 0/0:27,0:27:75.22:0,75,912 0/0:39,0:39:99:0,105,1258 0/0:30,0:30:84.25:0,84,1027 0/0:30,0:30:78.24:0,78,957 0/0:29,0:29:81.25:0,81,1002 19 50881054 . G A 663.55 . AC=2;AF=0.024;AN=84;BaseQRankSum=-5.850;DP=1742;Dels=0.00;FS=1.658;HRun=1;HaplotypeScore=1.2857;InbreedingCoeff=-0.0244;MQ=59.15;MQ0=0;MQRankSum=0.105;QD=13.27;ReadPosRankSum=-0.442 GT:AD:DP:GQ:PL 0/0:32,0:32:87.26:0,87,1087 0/0:23,0:23:66.20:0,66,823 0/0:20,0:20:54.18:0,54,711 0/0:128,0:128:99:0,346,4653 0/0:115,0:115:99:0,307,4158 0/0:87,0:87:99:0,238,3166 0/0:60,0:60:99:0,160,2118 0/0:65,0:67:99:0,184,2421 0/1:14,14:28:99:407,0,364 0/0:12,0:12:33.10:0,33,408 0/1:11,11:22:99:319,0,313 0/0:24,0:24:66.21:0,66,830 0/0:14,0:14:42.13:0,42,533 0/0:18,0:18:48.15:0,48,592 0/0:85,0:85:99:0,235,2996 0/0:28,0:28:78.24:0,78,988 0/0:24,0:24:66.21:0,66,833 0/0:25,0:25:72.23:0,72,915 0/0:35,0:36:96.29:0,96,1193 0/0:55,0:55:99:0,159,1966 0/0:56,0:57:99:0,162,2036 0/0:35,0:35:99:0,105,1274 0/0:127,0:128:99:0,346,4696 0/0:67,0:67:99:0,166,2237 0/0:61,0:61:99:0,160,2170 0/0:58,0:58:99:0,162,2100 0/0:13,0:13:39.11:0,39,472 0/0:22,0:22:63.20:0,63,794 0/0:20,0:20:60.19:0,60,752 0/0:21,0:21:60.19:0,60,752 0/0:23,0:23:66.15:0,66,782 0/0:46,0:47:99:0,117,1505 0/0:32,0:32:84.27:0,84,1071 0/0:27,0:27:78.25:0,78,981 0/0:31,0:31:84.27:0,84,1084 0/0:26,0:26:75.23:0,75,942 0/0:57,0:57:99:0,159,1981 0/0:32,0:32:90.28:0,90,1133 0/0:29,0:29:81.26:0,81,1033 0/0:22,0:22:66.21:0,66,841 0/0:19,0:19:57.14:0,57,681 0/0:12,0:12:33.10:0,33,414 19 50905042 . G A 5623.28 . AC=11;AF=0.131;AN=84;BaseQRankSum=2.444;DP=1656;Dels=0.00;FS=3.200;HRun=0;HaplotypeScore=1.7783;InbreedingCoeff=0.0584;MQ=58.20;MQ0=0;MQRankSum=-1.206;QD=13.65;ReadPosRankSum=-0.312 GT:AD:DP:GQ:PL 0/0:23,0:23:60.11:0,60,635 0/0:23,0:24:54.12:0,54,588 0/0:20,0:20:45.08:0,45,466 0/0:95,0:95:99:0,238,2786 0/0:76,0:76:99:0,183,2066 0/0:62,0:62:99:0,156,1825 0/1:23,29:56:99:699,0,615 0/0:63,0:66:99:0,159,1845 0/0:25,0:25:63.14:0,63,696 0/0:22,0:23:39.10:0,39,430 0/0:19,0:19:51.06:0,51,518 1/1:0,26:28:69.13:761,69,0 0/1:9,11:22:99:255,0,195 0/1:14,22:38:99:525,0,247 0/0:66,0:68:99:0,150,1640 0/0:50,0:52:99:0,123,1306 0/0:20,0:22:45.12:0,45,499 0/0:28,0:28:66.13:0,66,688 0/0:40,0:42:90.24:0,90,1012 0/0:60,0:60:99:0,144,1615 0/0:48,0:49:99:0,111,1239 0/1:22,21:45:99:481,0,510 0/0:80,1:85:99:0,177,2321 0/1:24,25:52:99:581,0,615 0/1:25,41:68:99:877,0,576 0/1:24,20:49:99:491,0,653 0/0:20,0:20:57.16:0,57,651 0/0:19,0:20:54.10:0,54,572 0/0:17,0:17:48.06:0,48,496 0/0:32,0:32:75.16:0,75,813 0/0:38,0:39:93.16:0,93,983 0/0:45,0:45:99:0,108,1201 0/0:37,0:37:90.21:0,90,995 0/1:10,16:28:99:470,0,227 0/0:22,1:23:26.18:0,26,627 0/1:9,16:26:99:483,0,173 0/0:46,0:49:99:0,120,1296 0/0:19,0:21:51.12:0,51,549 0/0:31,0:32:78.19:0,78,853 0/0:22,0:22:51.10:0,51,540 0/0:13,0:15:27.05:0,27,280 0/0:32,0:33:81.13:0,81,858 19 50905074 . G A 8363.11 . AC=11;AF=0.131;AN=84;BaseQRankSum=0.970;DP=1925;Dels=0.00;FS=30.943;HRun=0;HaplotypeScore=1.4932;InbreedingCoeff=0.0585;MQ=58.40;MQ0=0;MQRankSum=-0.380;QD=17.79;ReadPosRankSum=2.821 GT:AD:DP:GQ:PL 0/0:30,0:30:90.23:0,90,1011 0/0:31,0:31:87.23:0,87,967 0/0:20,0:20:60.15:0,60,675 0/0:93,0:93:99:0,268,3275 0/0:98,0:98:99:0,292,3567 0/0:65,0:65:99:0,184,2302 0/1:21,37:58:99:1164,0,521 0/0:67,0:67:99:0,193,2366 0/0:33,0:33:93.20:0,93,1014 0/0:29,0:29:81.20:0,81,920 0/0:23,0:23:66.17:0,66,764 1/1:0,34:34:99:1175,102,0 0/1:18,19:37:99:568,0,466 0/1:20,28:49:99:820,0,508 0/0:87,0:87:99:0,232,2727 0/0:55,1:56:99:0,153,1794 0/0:45,0:45:99:0,123,1383 0/0:26,0:26:69.18:0,69,786 0/0:52,0:52:99:0,150,1715 0/0:70,0:70:99:0,177,2031 0/0:68,0:68:99:0,193,2234 0/1:25,30:55:99:808,0,645 0/0:105,0:105:99:0,298,3730 0/1:25,28:54:99:789,0,737 0/1:21,33:54:99:976,0,574 0/1:23,25:48:99:731,0,586 0/0:24,0:24:69.18:0,69,797 0/0:28,0:28:81.22:0,81,934 0/0:18,0:18:54.14:0,54,610 0/0:26,0:26:72.19:0,72,813 0/0:41,0:41:99:0,117,1297 0/0:55,0:56:99:0,147,1724 0/0:48,1:50:99:0,105,1534 0/1:19,21:40:99:588,0,503 0/0:19,0:19:51.14:0,51,591 0/1:16,25:41:99:744,0,367 0/0:58,0:58:99:0,156,1825 0/0:29,0:29:78.21:0,78,903 0/0:27,0:27:72.19:0,72,819 0/0:26,0:26:72.20:0,72,828 0/0:26,0:26:78.18:0,78,858 0/0:29,0:29:87.24:0,87,1001 19 50910284 . G A 509.03 . AC=1;AF=0.012;AN=84;BaseQRankSum=-6.548;DP=3101;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=2.7546;InbreedingCoeff=-0.0120;MQ=58.12;MQ0=1;MQRankSum=0.863;QD=7.71;ReadPosRankSum=0.097 GT:AD:DP:GQ:PL 0/0:74,0:74:99:0,208,2599 0/0:71,1:72:99:0,205,2536 0/0:52,0:52:99:0,147,1790 0/0:142,0:142:99:0,403,5283 0/0:104,0:104:99:0,289,3829 0/0:74,0:74:99:0,193,2544 0/1:40,26:66:99:555,0,1324 0/0:109,0:109:99:0,301,3972 0/0:65,0:65:99:0,190,2373 0/0:56,0:56:99:0,144,1807 0/0:57,0:57:99:0,150,1917 0/0:62,0:62:99:0,169,2092 0/0:39,0:39:99:0,105,1314 0/0:64,0:65:99:0,169,2115 0/0:214,0:215:99:0,605,7527 0/0:68,0:68:99:0,190,2387 0/0:50,0:50:99:0,138,1731 0/0:65,0:65:99:0,181,2230 0/0:84,0:84:99:0,217,2694 0/0:106,0:106:99:0,280,3491 0/0:82,0:83:99:0,217,2696 0/0:67,1:68:99:0,184,2238 0/0:108,0:108:99:0,304,4034 0/0:48,0:48:99:0,126,1684 0/0:91,1:92:99:0,217,3230 0/0:64,0:64:99:0,171,2209 0/0:51,0:51:99:0,138,1695 0/0:60,0:61:99:0,169,2110 0/0:55,1:56:99:0,156,1952 0/0:58,0:58:99:0,163,2039 0/0:66,0:66:99:0,193,2413 0/0:78,0:78:99:0,208,2574 0/0:82,0:82:99:0,214,2673 0/0:45,0:45:99:0,123,1560 0/0:57,0:57:99:0,162,2016 0/0:88,0:88:99:0,238,2886 0/0:65,0:65:99:0,171,2053 0/0:64,0:64:99:0,172,2130 0/0:64,0:64:99:0,175,2207 0/0:70,0:70:99:0,205,2521 0/0:40,0:40:99:0,114,1402 0/0:68,0:68:99:0,193,2390 19 50910293 . C T 426.22 . AC=1;AF=0.012;AN=84;BaseQRankSum=0.577;DP=2935;Dels=0.00;FS=6.532;HRun=1;HaplotypeScore=4.3432;InbreedingCoeff=-0.0120;MQ=58.12;MQ0=1;MQRankSum=-0.347;QD=7.10;ReadPosRankSum=-0.004 GT:AD:DP:GQ:PL 0/0:63,0:63:99:0,169,2092 0/0:66,0:67:99:0,175,2174 0/0:47,0:47:99:0,126,1537 0/0:135,1:136:99:0,328,4635 0/0:97,0:97:99:0,256,3305 0/0:77,0:77:99:0,181,2294 0/1:42,18:60:99:472,0,1184 0/0:99,0:99:99:0,268,3453 0/0:54,0:54:99:0,153,1833 0/0:53,0:53:99:0,135,1643 0/0:51,0:51:99:0,135,1694 0/0:66,0:66:99:0,168,2055 0/0:37,0:37:96.28:0,96,1170 0/0:63,0:63:99:0,168,2040 0/0:193,1:195:99:0,514,6266 0/0:59,0:59:99:0,165,2000 0/0:44,1:45:99:0,117,1465 0/0:55,0:55:99:0,147,1804 0/0:75,0:75:99:0,193,2361 0/0:105,0:105:99:0,274,3388 0/0:74,0:74:99:0,193,2325 0/0:73,0:73:99:0,169,2079 0/0:115,0:115:99:0,280,3633 0/0:46,0:46:99:0,114,1445 0/0:92,0:93:99:0,226,2924 0/0:66,0:66:99:0,160,2100 0/0:46,0:46:99:0,117,1409 0/0:54,1:55:99:0,144,1781 0/0:54,0:55:99:0,150,1804 0/0:58,0:58:99:0,147,1852 0/0:65,0:65:99:0,169,2105 0/0:84,0:85:99:0,211,2617 0/0:76,0:76:99:0,190,2334 0/0:42,0:42:99:0,108,1287 0/0:49,0:49:99:0,135,1628 0/0:83,1:84:99:0,205,2526 0/0:56,0:56:99:0,150,1811 0/0:64,0:64:99:0,165,1976 0/0:65,0:65:99:0,159,2014 0/0:61,0:62:99:0,172,2070 0/0:39,0:39:99:0,105,1302 0/0:63,0:63:99:0,169,2089 19 50910295 . A C 130.15 . AC=5;AF=0.060;AN=84;BaseQRankSum=-15.776;DP=3395;Dels=0.00;FS=1761.850;HRun=2;HaplotypeScore=4.1076;InbreedingCoeff=-0.0939;MQ=58.35;MQ0=1;MQRankSum=6.273;QD=0.38;ReadPosRankSum=-18.068 GT:AD:DP:GQ:PL 0/0:51,18:69:55.18:0,55,1455 0/0:56,19:75:76.39:0,76,1542 0/0:38,10:48:65.72:0,66,1144 0/0:110,72:183:80.85:0,81,3264 0/0:84,42:126:20.49:0,20,2456 0/0:59,41:100:99:0,109,1917 0/0:48,20:68:99:0,128,1459 0/0:80,36:116:99:0,151,2442 0/1:45,21:66:45.17:45,0,1282 0/0:40,17:57:80.85:0,81,1138 0/0:41,12:53:35.80:0,36,1267 0/1:52,22:74:24.33:24,0,1386 0/0:29,13:42:2.59:0,3,815 0/0:50,20:70:22.75:0,23,1460 0/0:166,73:240:66.45:0,66,4781 0/0:50,11:61:65.67:0,66,1517 0/0:36,16:53:41.38:0,41,1071 0/0:46,22:68:65.11:0,65,1471 0/0:63,18:82:99:0,118,1956 0/0:84,32:116:99:0,170,2619 0/0:64,14:79:99:0,144,1948 0/1:51,29:80:25.72:26,0,1439 0/0:89,56:145:4.28:0,4,2428 0/0:32,20:52:8.07:0,8,981 0/0:71,40:111:92.19:0,92,2142 0/0:53,22:75:99:0,144,1644 0/0:35,19:55:2.47:1,0,883 0/0:47,16:63:22.65:0,23,1407 0/0:44,17:61:8.38:0,8,1271 0/0:44,21:65:1.33:4,0,1298 0/0:56,25:81:27.41:0,27,1523 0/0:65,34:100:21.77:0,22,1854 0/0:57,27:84:99:0,108,1709 0/1:32,19:52:99:111,0,967 0/0:40,13:53:17.63:0,18,1192 0/0:62,32:94:35:0,35,1760 0/0:43,18:61:58.84:0,59,1274 0/0:47,25:73:47.83:0,48,1448 0/0:49,20:69:85.06:0,85,1585 0/0:52,13:66:91.71:0,92,1570 0/0:31,6:37:66.57:0,67,1003 0/1:52,20:72:16.78:17,0,1486 19 50944179 . C T 647.35 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.030;DP=1656;Dels=0.00;FS=1.497;HRun=0;HaplotypeScore=0.6935;InbreedingCoeff=-0.0244;MQ=59.12;MQ0=0;MQRankSum=1.451;QD=12.45;ReadPosRankSum=0.018 GT:AD:DP:GQ:PL 0/0:29,0:29:78.23:0,78,929 0/0:23,0:23:60.18:0,60,722 0/0:40,0:40:96.26:0,96,1146 0/0:59,0:59:99:0,153,1914 0/0:69,0:69:99:0,175,2237 0/0:38,0:38:99:0,99,1222 0/0:25,1:26:33.64:0,34,824 0/0:60,0:60:99:0,138,1764 0/0:27,0:27:66.19:0,66,791 0/0:25,0:25:69.20:0,69,812 0/0:31,0:31:78.22:0,78,931 0/0:30,0:30:87.23:0,87,987 0/0:36,0:36:93.25:0,93,1090 0/0:26,0:26:75.21:0,75,885 0/0:113,0:114:99:0,280,3388 0/0:22,0:22:57.16:0,57,656 0/0:35,0:35:93.26:0,93,1108 0/0:32,0:32:84.24:0,84,984 0/0:60,0:60:99:0,150,1755 0/0:70,0:71:99:0,184,2170 0/0:57,0:58:99:0,144,1741 0/0:43,0:43:99:0,111,1314 0/0:66,0:66:99:0,172,2190 0/0:32,0:32:84.24:0,84,1045 0/0:40,0:40:99:0,111,1375 0/0:27,0:27:66.20:0,66,831 0/0:26,0:26:66.18:0,66,786 0/0:26,0:26:78.18:0,78,861 0/0:32,0:32:87.24:0,87,1020 0/0:18,0:18:51.13:0,51,568 0/0:27,0:27:72.21:0,72,854 0/0:53,0:53:99:0,129,1586 0/0:54,0:54:99:0,147,1749 0/0:31,0:31:93.26:0,93,1083 0/0:29,0:29:78.22:0,78,931 0/0:29,0:29:81.21:0,81,926 0/0:75,0:76:99:0,181,2228 0/0:24,0:24:66.18:0,66,770 0/0:27,0:27:69.19:0,69,804 0/1:8,7:15:99:211,0,204 0/1:17,20:37:99:499,0,436 0/0:33,0:33:93.26:0,93,1089 19 50945512 . G A 716.59 . AC=4;AF=0.048;AN=84;BaseQRankSum=3.497;DP=865;Dels=0.00;FS=10.881;HRun=1;HaplotypeScore=0.5068;InbreedingCoeff=-0.0501;MQ=59.18;MQ0=0;MQRankSum=0.347;QD=12.15;ReadPosRankSum=-1.444 GT:AD:DP:GQ:PL 0/0:24,0:24:66.18:0,66,770 0/0:20,0:20:51.14:0,51,610 0/1:12,7:19:99:173,0,360 0/0:20,0:20:57.18:0,57,720 0/0:19,0:19:51.16:0,51,656 0/1:9,6:15:99:188,0,254 0/0:13,0:13:36.10:0,36,435 0/1:4,6:10:99:197,0,108 0/0:16,0:16:45.12:0,45,516 0/0:19,0:19:51.13:0,51,595 0/0:21,0:21:57.16:0,57,666 0/0:19,0:19:54.16:0,54,634 0/0:18,0:18:48.13:0,48,561 0/0:11,0:11:30.08:0,30,350 0/0:61,0:61:99:0,165,1906 0/0:15,0:15:39.11:0,39,456 0/0:27,0:27:72.22:0,72,884 0/0:16,0:16:45.11:0,45,514 0/0:38,0:38:99:0,99,1128 0/0:43,0:43:99:0,111,1277 0/0:28,0:28:81.19:0,81,906 0/0:25,0:25:69.20:0,69,814 0/0:19,0:19:45.14:0,45,570 0/0:8,0:8:21.07:0,21,272 0/0:14,0:14:42.13:0,42,519 0/0:12,0:12:33.10:0,33,390 0/0:17,0:17:51.15:0,51,597 0/0:19,0:19:57.17:0,57,679 0/0:12,0:12:36.09:0,36,392 0/0:18,0:18:42.12:0,42,510 0/1:5,10:15:99:245,0,122 0/0:37,0:37:96.24:0,96,1130 0/0:29,0:29:78.21:0,78,910 0/0:22,0:22:57.13:0,57,671 0/0:13,0:13:39.11:0,39,467 0/0:18,0:18:51.13:0,51,594 0/0:29,0:29:84.21:0,84,961 0/0:16,0:16:48.10:0,48,529 0/0:19,0:19:51.15:0,51,604 0/0:20,0:20:57.11:0,57,620 0/0:15,0:15:42.10:0,42,462 0/0:16,0:16:48.13:0,48,556 19 50978597 . T G 6.28 . AC=4;AF=0.048;AN=84;BaseQRankSum=-13.218;DP=1173;Dels=0.00;FS=350.749;HRun=2;HaplotypeScore=1.1525;InbreedingCoeff=-0.0648;MQ=58.91;MQ0=0;MQRankSum=-0.329;QD=0.06;ReadPosRankSum=-9.094 GT:AD:DP:GQ:PL 0/0:9,4:13:27.08:0,27,329 0/1:15,7:22:22.84:23,0,310 0/0:16,1:18:45.13:0,45,539 0/0:64,11:75:99:0,183,2162 0/0:49,19:68:99:0,114,1578 0/0:25,15:40:10.75:0,11,808 0/0:26,5:31:56.54:0,57,936 0/0:27,15:42:55.61:0,56,971 0/0:10,1:12:30.09:0,30,358 0/0:15,3:18:15.40:0,15,406 0/0:13,3:16:2.99:0,3,400 0/0:16,4:20:42.11:0,42,498 0/0:14,4:18:30.98:0,31,362 0/0:21,2:23:54.15:0,54,633 0/0:50,16:66:66.71:0,67,1580 0/0:20,5:25:1.55:4,0,606 0/0:17,5:22:51.07:0,51,545 0/0:18,11:29:33.01:0,33,583 0/1:13,4:17:14.07:14,0,416 0/0:24,10:34:36.70:0,37,762 0/1:20,9:29:17.81:18,0,570 0/0:19,7:26:31.45:0,31,591 0/0:48,20:68:99:0,112,1686 0/0:30,12:42:87.05:0,87,1038 0/0:47,8:55:99:0,132,1500 0/0:23,7:30:31.88:0,32,762 0/0:8,1:9:24.07:0,24,279 0/0:14,3:17:39.12:0,39,480 0/0:8,3:11:24.07:0,24,279 0/0:13,1:14:39.12:0,39,480 0/0:12,2:14:33.10:0,33,396 0/0:26,11:37:66.64:0,67,761 0/0:18,4:22:27.54:0,28,616 0/0:13,3:16:39.12:0,39,472 0/0:15,9:24:20.61:0,21,447 0/0:16,7:23:42.12:0,42,481 0/1:21,11:32:32.86:33,0,615 0/0:21,6:27:37.54:0,38,713 0/0:12,4:16:33.07:0,33,378 0/0:16,4:20:45.10:0,45,523 0/0:11,5:16:27.08:0,27,320 0/0:13,3:16:39.11:0,39,460 19 50979562 . G A 442.63 . AC=2;AF=0.024;AN=84;BaseQRankSum=-0.273;DP=1105;Dels=0.00;FS=0.911;HRun=0;HaplotypeScore=0.8104;InbreedingCoeff=-0.0245;MQ=58.98;MQ0=0;MQRankSum=-0.375;QD=11.07;ReadPosRankSum=-0.328 GT:AD:DP:GQ:PL 0/0:17,0:17:51.13:0,51,569 0/1:12,8:20:99:204,0,342 0/1:8,12:20:99:301,0,205 0/0:60,0:60:99:0,175,2104 0/0:61,0:61:99:0,181,2234 0/0:28,0:28:81.23:0,81,986 0/0:27,0:27:78.23:0,78,979 0/0:31,0:31:87.26:0,87,1091 0/0:20,0:20:60.18:0,60,710 0/0:11,0:11:33.09:0,33,379 0/0:12,0:12:33.09:0,33,375 0/0:11,0:11:33.09:0,33,380 0/0:18,0:18:51.14:0,51,572 0/0:20,0:20:57.17:0,57,682 0/0:59,0:59:99:0,147,1771 0/0:23,0:23:69.17:0,69,774 0/0:13,0:13:39.10:0,39,444 0/0:11,0:11:30.09:0,30,361 0/0:36,0:36:99:0,102,1178 0/0:44,0:44:99:0,123,1415 0/0:50,0:51:99:0,132,1546 0/0:29,0:29:84.24:0,84,987 0/0:65,0:65:99:0,184,2299 0/0:30,0:30:81.24:0,81,1023 0/0:31,0:31:90.26:0,90,1142 0/0:32,0:33:90.28:0,90,1137 0/0:21,0:21:60.18:0,60,711 0/0:16,0:16:42.12:0,42,481 0/0:12,0:12:36.08:0,36,396 0/0:18,0:18:51.13:0,51,576 0/0:16,0:16:36.11:0,36,454 0/0:35,0:35:90.25:0,90,1055 0/0:33,0:33:93.25:0,93,1080 0/0:17,0:17:51.13:0,51,576 0/0:24,0:24:66.17:0,66,779 0/0:17,0:17:51.11:0,51,564 0/0:38,0:38:96.26:0,96,1141 0/0:22,0:22:60.11:0,60,672 0/0:19,0:19:57.14:0,57,655 0/0:15,0:15:39.11:0,39,463 0/0:14,0:14:42.08:0,42,452 0/0:7,0:7:21.07:0,21,259 19 51016200 . C T 874.43 . AC=1;AF=0.012;AN=84;BaseQRankSum=-1.814;DP=3809;Dels=0.00;FS=0.632;HRun=0;HaplotypeScore=2.1418;InbreedingCoeff=-0.0120;MQ=59.32;MQ0=0;MQRankSum=-1.052;QD=11.98;ReadPosRankSum=-1.625 GT:AD:DP:GQ:PL 0/0:76,1:78:99:0,180,2429 0/0:76,0:76:99:0,202,2365 0/0:69,0:69:99:0,178,2123 0/0:208,0:208:99:0,542,6924 0/0:157,0:157:99:0,397,5187 0/0:106,0:107:99:0,265,3356 0/0:110,0:110:99:0,286,3723 0/0:117,0:118:99:0,292,3797 0/0:68,0:68:99:0,178,2093 0/0:59,0:59:99:0,168,1972 0/1:39,33:73:99:921,0,967 0/0:65,0:65:99:0,180,2044 0/0:66,0:66:99:0,174,2078 0/0:77,0:77:99:0,208,2420 0/0:223,0:223:99:0,581,6963 0/0:73,0:73:99:0,187,2229 0/0:59,0:59:99:0,141,1665 0/0:56,0:56:99:0,150,1769 0/0:120,0:120:99:0,316,3686 0/0:127,0:128:99:0,337,4002 0/0:109,0:109:99:0,280,3392 0/0:87,0:87:99:0,223,2717 0/0:175,0:175:99:0,463,6023 0/0:92,0:92:99:0,244,3133 0/0:96,0:96:99:0,241,3116 0/0:101,0:101:99:0,256,3363 0/0:52,0:52:99:0,147,1690 0/0:67,0:67:99:0,183,2112 0/0:58,0:58:99:0,162,1869 0/0:56,0:56:99:0,162,1899 0/0:54,0:54:99:0,153,1748 0/0:135,0:135:99:0,349,4194 0/0:95,0:95:99:0,262,3030 0/0:55,0:55:99:0,159,1826 0/0:71,0:71:99:0,184,2219 0/0:64,0:64:99:0,184,2159 0/0:114,0:116:99:0,286,3347 0/0:71,0:72:99:0,196,2248 0/0:62,0:62:99:0,168,2008 0/0:58,0:58:99:0,153,1755 0/0:70,0:71:99:0,190,2189 0/0:72,0:72:99:0,193,2315 19 51128661 . T C 6017.52 . AC=69;AF=0.841;AN=82;BaseQRankSum=1.562;DP=209;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.1783;InbreedingCoeff=0.0507;MQ=58.50;MQ0=0;MQRankSum=-1.847;QD=29.94;ReadPosRankSum=0.409 GT:AD:DP:GQ:PL 0/1:4,6:10:99:203,0,122 1/1:0,6:6:18.06:221,18,0 1/1:0,10:10:27.08:322,27,0 0/1:2,3:5:60.51:101,0,61 1/1:0,5:5:15.05:192,15,0 1/1:0,3:3:9.03:124,9,0 1/1:0,2:2:6.02:82,6,0 1/1:0,4:4:12.04:157,12,0 1/1:0,1:1:3.01:38,3,0 1/1:0,2:2:6.02:71,6,0 1/1:0,3:3:6.02:70,6,0 1/1:0,2:2:6.02:69,6,0 ./. 1/1:0,7:7:18.04:216,18,0 1/1:0,12:12:33.10:400,33,0 1/1:0,8:8:18.06:234,18,0 1/1:0,4:4:6.02:68,6,0 0/0:6,0:6:18.06:0,18,218 0/1:2,1:3:26.22:26,0,66 1/1:0,7:7:21.06:250,21,0 1/1:0,6:6:18.06:221,18,0 1/1:0,7:7:21.07:264,21,0 0/0:2,0:2:6.02:0,6,77 0/1:1,3:4:27.10:71,0,27 1/1:0,4:4:9.03:120,9,0 1/1:0,1:1:3.01:38,3,0 1/1:0,6:6:18.06:224,18,0 1/1:0,7:7:21.07:262,21,0 1/1:0,2:2:6.02:77,6,0 0/1:3,1:4:22.32:22,0,100 0/1:1,1:2:30.96:33,0,31 1/1:0,9:9:21.07:278,21,0 0/1:2,6:8:42.66:192,0,43 1/1:0,4:4:12.04:148,12,0 1/1:0,8:8:21.07:276,21,0 1/1:0,4:4:9.03:114,9,0 1/1:0,5:5:15.02:168,15,0 0/1:4,3:7:93.11:93,0,121 1/1:0,5:5:15.05:189,15,0 1/1:0,5:5:15.04:179,15,0 1/1:0,2:2:6.02:79,6,0 0/1:3,4:7:87.12:124,0,87 19 51140654 . G A 2612.18 . AC=7;AF=0.083;AN=84;BaseQRankSum=1.897;DP=1528;Dels=0.00;FS=0.380;HRun=0;HaplotypeScore=1.0378;InbreedingCoeff=-0.0910;MQ=58.95;MQ0=1;MQRankSum=-0.294;QD=12.32;ReadPosRankSum=0.178 GT:AD:DP:GQ:PL 0/0:28,0:28:81.21:0,81,926 0/0:24,0:24:63.17:0,63,733 0/0:21,1:22:22.34:0,22,590 0/0:87,0:87:99:0,229,2899 0/0:60,0:60:99:0,169,2155 0/1:20,20:41:99:513,0,581 0/0:40,0:40:99:0,102,1314 0/1:22,16:38:99:380,0,682 0/0:22,0:22:51.15:0,51,622 0/1:14,17:31:99:486,0,381 0/1:16,18:34:99:462,0,412 0/0:24,0:24:69.20:0,69,802 0/0:24,0:24:63.18:0,63,741 0/0:27,0:27:75.22:0,75,890 0/0:91,0:92:99:0,244,2830 0/0:33,0:33:96.27:0,96,1109 0/0:31,0:31:84.23:0,84,987 0/0:19,0:19:51.14:0,51,586 0/0:53,0:53:99:0,147,1672 0/0:61,0:61:99:0,165,1998 0/0:45,0:45:99:0,111,1337 0/0:36,0:36:96.28:0,96,1151 0/0:70,0:70:99:0,193,2462 0/0:33,0:33:93.29:0,93,1178 0/0:57,0:57:99:0,147,1879 0/0:45,0:46:99:0,120,1526 0/0:29,0:29:72.20:0,72,843 0/0:23,0:23:69.18:0,69,767 0/0:22,0:22:60.18:0,60,716 0/0:28,0:28:78.21:0,78,880 0/1:8,9:17:99:236,0,186 0/0:42,0:43:99:0,117,1334 0/0:32,0:32:87.24:0,87,984 0/0:21,1:22:60.16:0,60,698 0/0:34,0:34:96.26:0,96,1097 0/1:18,8:26:99:195,0,459 0/0:52,0:52:99:0,138,1563 0/0:24,0:24:66.17:0,66,748 0/1:9,15:25:99:455,0,214 0/0:29,0:29:69.19:0,69,800 0/0:23,0:23:66.19:0,66,779 0/0:21,0:21:60.18:0,60,714 19 51207392 . G T 5402.87 . AC=3;AF=0.036;AN=84;BaseQRankSum=11.328;DP=5821;DS;Dels=0.00;FS=2.503;HRun=0;HaplotypeScore=2.8834;InbreedingCoeff=-0.0370;MQ=59.11;MQ0=0;MQRankSum=0.794;QD=10.91;ReadPosRankSum=1.981 GT:AD:DP:GQ:PL 0/0:106,0:106:99:0,277,3325 0/0:97,0:97:99:0,256,3017 0/0:92,0:92:99:0,250,2929 0/0:246,0:246:99:0,605,7835 0/1:106,74:180:99:2118,0,2984 0/1:103,74:177:99:1888,0,2856 0/0:158,0:158:99:0,385,4986 0/1:86,52:138:99:1397,0,2394 0/0:120,0:120:99:0,295,3582 0/0:82,0:84:99:0,208,2452 0/0:87,0:87:99:0,223,2632 0/0:93,0:93:99:0,256,3005 0/0:63,0:63:99:0,171,2020 0/0:122,0:122:99:0,322,3786 0/0:250,0:250:99:0,653,7655 0/0:80,0:80:99:0,223,2540 0/0:111,0:111:99:0,295,3504 0/0:96,0:96:99:0,253,2946 0/0:207,0:207:99:0,523,6223 0/0:238,1:239:99:0,569,6991 0/0:246,1:247:99:0,602,7219 0/0:165,0:165:99:0,433,5125 0/0:239,0:239:99:0,623,7956 0/0:183,0:183:99:0,454,5881 0/0:173,0:173:99:0,430,5580 0/0:148,0:148:99:0,373,4802 0/0:77,0:77:99:0,199,2349 0/0:113,0:113:99:0,310,3681 0/0:83,0:83:99:0,223,2611 0/0:103,0:103:99:0,286,3369 0/0:102,0:102:99:0,271,3176 0/0:197,0:197:99:0,514,6110 0/0:160,0:160:99:0,376,4567 0/0:115,0:115:99:0,292,3484 0/0:99,0:99:99:0,262,3071 0/0:118,0:118:99:0,325,3742 0/0:236,1:237:99:0,550,7050 0/0:112,0:112:99:0,295,3444 0/0:113,0:113:99:0,298,3514 0/0:107,0:107:99:0,289,3322 0/0:91,0:91:99:0,235,2742 0/0:93,0:93:99:0,259,3002 19 51293955 . G A 185.16 . AC=7;AF=0.088;AN=80;BaseQRankSum=0.996;DP=148;Dels=0.00;FS=1.302;HRun=0;HaplotypeScore=0.0816;InbreedingCoeff=-0.0194;MQ=58.21;MQ0=0;MQRankSum=0.133;QD=7.12;ReadPosRankSum=-0.337 GT:AD:DP:GQ:PL 0/0:2,0:2:3.01:0,3,32 0/0:2,0:2:6.02:0,6,76 0/0:4,0:4:12.03:0,12,138 0/0:3,0:3:6.02:0,6,80 0/1:1,1:2:31.78:32,0,34 0/0:4,0:4:9.03:0,9,127 0/0:2,0:2:6.02:0,6,73 0/0:2,0:2:6.01:0,6,69 0/0:2,0:2:6.01:0,6,67 0/0:2,0:2:6.02:0,6,73 0/0:4,0:4:9.02:0,9,108 ./. 0/0:2,0:2:6.02:0,6,76 0/0:3,0:3:9.03:0,9,110 0/0:19,0:19:48.13:0,48,586 0/0:2,0:2:6.02:0,6,71 0/0:1,0:1:3.01:0,3,38 0/0:3,0:3:9.03:0,9,110 0/0:6,0:6:18.05:0,18,201 0/0:5,0:5:15.04:0,15,177 0/1:2,1:3:27.95:28,0,57 0/1:1,4:5:28.77:80,0,29 0/0:4,0:4:9.03:0,9,126 ./. 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6.02:0,6,71 0/0:1,0:1:3:0,3,29 0/0:2,0:2:6.01:0,6,60 0/0:5,0:5:9.03:0,9,119 0/0:4,0:5:12.03:0,12,136 1/1:1,2:3:6.02:73,6,0 0/0:10,0:10:21.06:0,21,276 0/0:3,0:3:9.01:0,9,96 0/1:5,1:6:23.53:24,0,132 0/1:5,2:7:52.79:53,0,147 0/0:4,0:4:12.04:0,12,141 0/0:4,0:4:12.03:0,12,139 0/0:4,0:4:12.04:0,12,153 0/0:3,0:3:9.03:0,9,103 0/0:2,0:2:6.02:0,6,75 0/0:1,0:1:3.01:0,3,39 0/0:3,0:3:9.03:0,9,107 19 51294984 . C T 2282.14 . AC=2;AF=0.024;AN=84;BaseQRankSum=9.489;DP=1956;DS;Dels=0.00;FS=10.749;HRun=0;HaplotypeScore=1.5988;InbreedingCoeff=-0.0244;MQ=59.24;MQ0=0;MQRankSum=0.400;QD=16.07;ReadPosRankSum=1.193 GT:AD:DP:GQ:PL 0/0:27,0:27:78.19:0,78,851 0/0:25,0:25:72.15:0,72,755 0/0:31,0:31:84.21:0,84,918 0/0:104,0:104:99:0,304,3479 0/0:105,0:105:99:0,307,3497 0/1:38,41:79:99:1254,0,1048 0/0:73,0:73:99:0,205,2333 0/1:27,36:63:99:1091,0,706 0/0:25,0:25:72.16:0,72,767 0/0:33,0:33:99:0,99,1061 0/0:24,0:24:69.14:0,69,713 0/0:24,0:24:69.13:0,69,715 0/0:25,0:25:69.14:0,69,726 0/0:26,0:26:75.19:0,75,811 0/0:94,0:94:99:0,244,2688 0/0:46,0:46:99:0,129,1383 0/0:28,0:28:78.18:0,78,848 0/0:20,0:20:57.12:0,57,618 0/0:70,0:70:99:0,195,2091 0/0:69,0:69:99:0,177,1970 0/0:54,0:54:99:0,150,1624 0/0:43,0:43:99:0,126,1369 0/0:128,0:129:99:0,364,4242 0/0:46,0:46:99:0,132,1532 0/0:73,0:73:99:0,208,2423 0/0:58,0:58:99:0,168,1973 0/0:23,0:23:66.17:0,66,734 0/0:34,0:34:99:0,99,1033 0/0:34,0:34:96.24:0,96,1030 0/0:21,0:21:60.12:0,60,628 0/0:35,0:35:93.25:0,93,1041 0/0:64,0:64:99:0,177,1974 0/0:53,0:53:99:0,147,1593 0/0:26,0:27:75.15:0,75,790 0/0:30,0:30:87.21:0,87,926 0/0:35,0:35:99:0,99,1055 0/0:56,0:56:99:0,147,1636 0/0:38,0:38:99:0,102,1113 0/0:35,0:35:99:0,105,1131 0/0:22,0:22:66.17:0,66,718 0/0:22,0:22:63.16:0,63,683 0/0:33,0:33:96.21:0,96,1027 19 51297825 . G A 9220.20 . 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C A 9237.75 . 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C G 65985.35 . 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A G 77002.73 . 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C T 1575.65 . 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C G 13002.41 . 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C G 597.54 . 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C T 2537.04 . 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T G 44141.94 . AC=49;AF=0.583;AN=84;BaseQRankSum=23.837;DP=2318;Dels=0.00;FS=11.809;HRun=1;HaplotypeScore=1.3124;InbreedingCoeff=-0.2245;MQ=59.30;MQ0=0;MQRankSum=0.377;QD=21.29;ReadPosRankSum=-3.053 GT:AD:DP:GQ:PL 0/1:28,27:55:99:801,0,736 1/1:0,33:33:81.22:994,81,0 1/1:0,46:46:99:1601,126,0 0/1:64,45:109:99:1261,0,1811 0/1:57,48:105:99:1584,0,1700 1/1:0,71:71:99:2625,196,0 1/1:1,87:88:99:3246,218,0 1/1:0,71:71:99:2663,202,0 1/1:2,46:48:74.36:1570,74,0 0/1:26,23:49:99:665,0,746 1/1:0,30:30:84.26:1054,84,0 0/1:24,24:48:99:664,0,705 0/0:36,0:36:99:0,108,1295 1/1:0,49:49:99:1710,138,0 1/1:1,128:130:99:4470,364,0 0/1:19,14:33:99:420,0,574 0/1:22,18:40:99:567,0,589 0/1:17,21:38:99:669,0,432 0/1:40,24:64:99:642,0,1115 0/1:36,26:62:99:712,0,917 0/1:26,18:44:99:464,0,727 0/1:26,15:41:99:406,0,784 1/1:2,134:136:99:5024,337,0 0/1:30,22:52:99:685,0,935 0/0:79,0:79:99:0,214,2610 0/1:27,32:60:99:961,0,757 1/1:0,27:27:78.23:958,78,0 0/1:19,21:40:99:528,0,498 0/1:28,22:50:99:655,0,748 0/1:18,19:37:99:500,0,484 0/1:19,24:43:99:782,0,485 0/1:38,17:55:99:469,0,1067 0/1:35,22:57:99:631,0,952 0/1:19,26:45:99:769,0,557 0/1:18,20:38:99:489,0,513 0/1:32,22:54:99:641,0,925 0/1:28,12:40:99:316,0,821 0/1:26,22:48:99:657,0,731 1/1:0,37:37:99:1289,105,0 0/0:38,0:38:99:0,111,1322 0/0:45,0:45:99:0,135,1563 0/0:47,0:47:99:0,141,1664 19 51519236 . A G 5910.57 . AC=52;AF=0.619;AN=84;BaseQRankSum=0.049;DP=287;Dels=0.00;FS=5.789;HRun=1;HaplotypeScore=0.1535;InbreedingCoeff=0.1986;MQ=58.56;MQ0=0;MQRankSum=1.265;QD=24.94;ReadPosRankSum=0.325 GT:AD:DP:GQ:PL 0/1:1,7:8:6.52:230,0,7 1/1:0,6:6:18.05:216,18,0 1/1:0,4:4:12.03:136,12,0 1/1:0,17:17:45.12:548,45,0 1/1:0,8:8:24.07:304,24,0 1/1:1,6:7:15.05:200,15,0 1/1:0,9:9:27.09:356,27,0 1/1:0,6:6:15.03:174,15,0 1/1:0,2:2:6.01:62,6,0 1/1:0,7:7:15.03:174,15,0 1/1:0,3:3:9.03:105,9,0 0/1:1,1:2:27.42:27,0,30 0/1:3,6:9:76.64:170,0,77 0/1:7,2:9:45.28:45,0,193 1/1:0,18:19:51.10:552,51,0 1/1:1,4:5:12.04:147,12,0 0/1:3,3:6:78.48:78,0,94 1/1:0,5:5:12.04:154,12,0 1/1:0,4:4:12.03:137,12,0 1/1:0,8:8:21.04:227,21,0 0/1:4,1:5:8.67:9,0,121 1/1:0,12:12:30.08:353,30,0 1/1:0,19:19:48.10:586,48,0 0/1:1,0:1:1.76:0,3,35 0/0:4,0:4:12.04:0,12,144 0/1:1,2:3:26.23:63,0,26 0/0:5,0:5:15.04:0,15,167 0/0:3,0:3:9.03:0,9,108 0/0:5,0:5:15.04:0,15,177 0/1:1,7:8:15.92:188,0,16 0/1:2,2:4:26.23:64,0,26 0/1:4,5:9:89.71:90,0,91 0/1:2,6:8:49.04:190,0,49 0/0:7,0:8:21.06:0,21,247 0/1:6,2:8:50.01:50,0,164 0/0:8,0:8:18.06:0,18,224 0/1:2,4:6:57.56:103,0,58 1/1:0,3:3:9:88,9,0 0/0:8,0:9:15.05:0,15,187 0/1:3,2:5:58.38:58,0,70 0/1:1,1:2:27.42:27,0,27 0/0:8,0:8:21.07:0,21,264 19 51519259 . C T 5334.17 . AC=52;AF=0.634;AN=82;BaseQRankSum=-9.300;DP=247;Dels=0.00;FS=1.695;HRun=2;HaplotypeScore=0.2303;InbreedingCoeff=0.3419;MQ=58.66;MQ0=0;MQRankSum=-0.628;QD=27.22;ReadPosRankSum=-0.979 GT:AD:DP:GQ:PL 1/1:0,5:5:15.05:177,15,0 1/1:0,8:8:24.07:287,24,0 1/1:0,3:3:9.03:106,9,0 1/1:0,11:11:30.07:340,30,0 1/1:0,10:10:30.08:339,30,0 1/1:0,4:4:12.04:146,12,0 1/1:0,2:2:6.02:71,6,0 1/1:0,6:6:15.05:187,15,0 1/1:0,2:2:6.02:72,6,0 1/1:0,4:4:12.04:140,12,0 1/1:0,4:4:6.02:80,6,0 1/1:0,1:1:3.01:37,3,0 0/1:2,6:8:49.86:182,0,50 0/1:6,1:7:14.19:14,0,208 1/1:0,20:20:54.16:642,54,0 1/1:0,4:4:12.03:135,12,0 0/1:4,3:7:82.85:83,0,129 1/1:0,3:3:9.03:108,9,0 1/1:0,9:9:21.06:255,21,0 1/1:0,11:11:30.07:344,30,0 0/1:3,1:4:21.40:21,0,100 1/1:0,10:10:27.08:312,27,0 1/1:0,10:10:30.09:346,30,0 0/0:1,0:1:3.01:0,3,35 0/0:1,0:1:3.01:0,3,41 ./. 0/0:5,0:5:12.04:0,12,146 0/0:6,0:6:18.06:0,18,227 0/0:4,0:4:12.04:0,12,154 0/1:2,8:10:47.07:245,0,47 0/1:3,1:4:27.10:27,0,75 0/1:1,4:5:24.27:122,0,24 0/1:2,6:8:52.30:191,0,52 0/0:9,0:9:27.09:0,27,341 0/1:3,3:6:92.03:92,0,99 0/0:8,0:8:24.05:0,24,291 0/1:3,1:4:21.40:21,0,97 1/1:0,4:4:12.04:140,12,0 0/0:7,0:7:18.05:0,18,221 0/0:2,0:2:6.02:0,6,72 1/1:0,2:2:6.02:71,6,0 0/0:8,0:8:24.08:0,24,308 19 51519346 . G C 3510.33 . 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T G 7489.48 . AC=64;AF=0.762;AN=84;BaseQRankSum=-5.942;DP=356;Dels=0.00;FS=3.609;HRun=0;HaplotypeScore=0.2162;InbreedingCoeff=-0.1994;MQ=58.66;MQ0=0;MQRankSum=0.855;QD=21.77;ReadPosRankSum=0.597 GT:AD:DP:GQ:PL 1/1:0,13:13:33.09:388,33,0 1/1:0,8:8:21.06:237,21,0 1/1:0,4:4:12.03:139,12,0 1/1:0,17:17:45.12:521,45,0 1/1:0,9:9:27.06:301,27,0 1/1:0,3:3:9.03:113,9,0 1/1:0,5:5:9.02:108,9,0 1/1:0,7:7:21.06:236,21,0 1/1:0,3:3:9.02:99,9,0 1/1:0,4:4:6:59,6,0 1/1:0,5:5:15.04:169,15,0 0/1:7,2:9:42.97:43,0,154 0/1:3,2:5:52.61:53,0,60 1/1:0,8:8:24.06:267,24,0 1/1:1,22:23:57.13:643,57,0 0/1:6,1:7:19.74:20,0,165 0/1:8,6:14:99:127,0,230 1/1:0,6:6:18.03:197,18,0 1/1:0,11:11:33.09:389,33,0 1/1:0,15:16:36.10:434,36,0 0/1:1,3:4:24.09:92,0,24 1/1:0,12:12:30.08:351,30,0 1/1:0,6:6:18.05:212,18,0 0/1:1,2:3:28.77:64,0,29 0/0:12,0:12:30.10:0,30,397 0/1:3,4:7:69.04:92,0,69 1/1:0,9:10:21.04:240,21,0 0/1:9,8:17:99:200,0,254 0/1:3,1:5:23.24:23,0,85 0/1:7,7:14:99:188,0,218 0/1:5,2:7:42.03:42,0,160 0/1:7,5:12:99:104,0,188 0/1:4,2:6:17.45:17,0,129 0/1:6,3:9:77.60:78,0,159 0/1:4,3:7:76.40:76,0,129 0/1:2,6:8:49.89:171,0,50 1/1:0,9:9:24.06:273,24,0 1/1:0,9:9:24.06:257,24,0 1/1:0,9:9:27.06:291,27,0 1/1:0,3:3:6.02:66,6,0 0/1:2,4:6:54.13:88,0,54 0/1:2,2:4:20.60:21,0,61 19 51520487 . A C 13813.19 . AC=63;AF=0.750;AN=84;BaseQRankSum=-0.357;DP=562;Dels=0.00;FS=6.998;HRun=0;HaplotypeScore=0.2810;InbreedingCoeff=-0.2109;MQ=58.49;MQ0=0;MQRankSum=-0.249;QD=25.53;ReadPosRankSum=4.507 GT:AD:DP:GQ:PL 1/1:0,11:11:27.07:329,27,0 1/1:0,6:6:18.05:215,18,0 1/1:0,5:5:15.04:172,15,0 1/1:0,28:28:72.22:923,72,0 1/1:0,29:29:84.25:1029,84,0 1/1:0,24:24:69.18:819,69,0 1/1:0,13:13:39.12:496,39,0 1/1:0,12:12:33.10:413,33,0 0/1:6,4:10:99:114,0,191 1/1:0,4:4:12.03:135,12,0 0/1:3,2:5:51.81:52,0,93 0/1:1,4:5:21.94:122,0,22 0/1:2,3:5:57.19:84,0,57 1/1:0,6:6:15.04:170,15,0 1/1:1,29:30:84.23:956,84,0 0/1:8,7:15:99:196,0,243 0/1:7,8:15:99:225,0,217 1/1:0,10:10:30.08:352,30,0 1/1:0,16:17:45.13:515,45,0 1/1:0,25:25:69.19:803,69,0 0/1:6,8:14:99:209,0,148 1/1:0,15:15:45.10:500,45,0 1/1:0,29:29:84.25:1051,84,0 0/1:8,8:16:99:167,0,229 0/0:21,0:21:51.11:0,51,594 0/1:9,7:16:99:172,0,279 1/1:0,6:6:15.04:181,15,0 0/1:8,2:10:35.86:36,0,243 0/1:4,7:11:79.02:192,0,79 0/1:3,6:9:81.60:139,0,82 0/1:5,2:7:50.57:51,0,132 0/1:3,12:15:63.77:313,0,64 0/1:5,7:13:99:188,0,145 0/1:6,4:10:99:112,0,181 0/1:3,11:14:74.81:252,0,75 0/1:8,10:18:99:302,0,175 1/1:0,14:14:42.12:487,42,0 1/1:0,8:8:21.06:238,21,0 1/1:0,10:10:27.08:331,27,0 1/1:0,13:13:39.08:463,39,0 0/1:7,3:10:83.20:83,0,213 1/1:0,8:8:21.05:228,21,0 19 51537234 . A C 163.97 . AC=10;AF=0.119;AN=84;BaseQRankSum=-8.506;DP=580;Dels=0.00;FS=325.776;HRun=2;HaplotypeScore=0.5415;InbreedingCoeff=-0.1619;MQ=58.13;MQ0=0;MQRankSum=0.314;QD=1.09;ReadPosRankSum=-6.408 GT:AD:DP:GQ:PL 0/1:9,5:14:23.10:23,0,279 0/0:8,3:11:24.06:0,24,264 0/0:5,3:8:15.04:0,15,174 0/0:21,4:25:63.17:0,63,714 0/0:14,12:26:38:0,38,464 0/0:13,2:15:39.12:0,39,484 0/0:15,3:18:13.58:0,14,463 0/0:13,4:17:39.11:0,39,447 0/1:12,4:16:25.92:26,0,305 0/0:5,4:9:13.28:0,13,141 0/0:8,5:13:24.06:0,24,276 0/0:12,2:14:34.33:0,34,381 0/0:12,5:17:35.14:0,35,392 0/1:4,4:8:44.03:44,0,125 0/0:18,14:32:19.35:0,19,566 0/0:6,0:6:18.05:0,18,208 0/0:9,5:14:1.25:5,0,258 0/0:2,0:2:6.02:0,6,69 0/1:11,2:13:18.18:18,0,352 0/1:8,8:16:67.23:67,0,220 0/0:19,2:21:39.59:0,40,470 0/1:14,8:22:14.70:15,0,408 0/0:17,0:17:48.14:0,48,559 0/0:10,3:13:30.09:0,30,359 0/0:14,5:19:38.15:0,38,441 0/0:3,1:4:9.03:0,9,109 0/0:6,3:9:18.05:0,18,203 0/0:5,4:9:12.03:0,12,137 0/0:4,5:9:12.03:0,12,137 0/1:8,5:13:31.20:31,0,207 0/0:9,0:9:27.08:0,27,312 0/1:9,6:15:11.52:12,0,229 0/0:13,7:20:39.09:0,39,434 0/0:2,1:3:6.02:0,6,71 0/0:10,5:15:6.41:0,6,313 0/0:15,3:18:14.04:0,14,444 0/1:16,6:22:19.27:19,0,469 0/1:7,4:11:36.82:37,0,228 0/0:8,4:12:24.07:0,24,280 0/0:6,2:8:18.05:0,18,216 0/0:5,2:7:13.59:0,14,144 0/0:9,1:10:27.08:0,27,322 19 51537323 . A C 142.64 . 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G A 966.69 . AC=19;AF=0.271;AN=70;BaseQRankSum=0.606;DP=114;Dels=0.00;FS=3.975;HRun=0;HaplotypeScore=0.0820;InbreedingCoeff=0.2324;MQ=58.43;MQ0=0;MQRankSum=-0.181;QD=17.58;ReadPosRankSum=-0.739 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,66 0/1:1,1:2:24.57:31,0,25 0/0:2,0:2:6.02:0,6,73 0/0:1,0:1:3.01:0,3,35 ./. ./. ./. ./. 0/1:2,5:7:41.03:149,0,41 0/0:3,0:3:9.03:0,9,107 0/0:1,0:1:3.01:0,3,34 0/0:2,0:2:6.02:0,6,76 0/0:2,0:2:6.02:0,6,70 0/0:1,0:1:3.01:0,3,39 0/1:8,3:11:42.49:42,0,217 0/1:1,0:1:1.76:0,3,32 0/1:1,2:3:28.77:63,0,29 0/1:3,2:5:60.11:60,0,71 1/1:0,3:3:9.03:110,9,0 1/1:0,9:9:27.08:324,27,0 0/0:8,0:8:21.06:0,21,249 0/0:7,0:7:21.05:0,21,231 0/0:2,0:2:6.02:0,6,72 ./. 0/0:1,0:1:3.01:0,3,36 0/0:1,0:1:3.01:0,3,35 0/0:2,0:2:6.02:0,6,74 0/0:2,0:2:6.02:0,6,70 ./. ./. 0/0:3,0:3:9.03:0,9,105 0/0:3,0:3:9.02:0,9,106 0/0:4,0:4:12.03:0,12,133 1/1:0,4:4:12.02:124,12,0 1/1:0,1:1:3.01:36,3,0 0/0:4,0:4:12.04:0,12,143 1/1:0,4:4:9.03:119,9,0 1/1:0,1:1:3.01:35,3,0 0/1:3,1:4:25.33:25,0,68 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6.01:0,6,63 0/0:4,0:4:9.03:0,9,109 19 51630482 . C A 41171.56 . 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C A 455.62 . 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T C 3197.90 . 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G A 397.69 . 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CCCGG C 5162.90 . 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G A 6145.50 . 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T C 429.32 . AC=1;AF=0.012;AN=84;BaseQRankSum=2.723;DP=838;Dels=0.00;FS=1.123;HRun=1;HaplotypeScore=0.8986;InbreedingCoeff=-0.0122;MQ=59.13;MQ0=0;MQRankSum=1.122;QD=14.80;ReadPosRankSum=-1.139 GT:AD:DP:GQ:PL 0/0:20,0:20:57.16:0,57,673 0/0:8,0:8:24.07:0,24,284 0/0:18,0:18:45.14:0,45,555 0/0:42,0:42:99:0,102,1248 0/0:34,0:34:96.26:0,96,1143 0/0:20,0:20:54.14:0,54,645 0/1:12,17:29:99:476,0,344 0/0:23,0:23:63.19:0,63,772 0/0:24,0:24:57.17:0,57,690 0/0:12,0:12:36.10:0,36,412 0/0:16,0:16:48.15:0,48,576 0/0:19,0:19:57.11:0,57,643 0/0:19,0:19:57.17:0,57,659 0/0:14,0:14:39.12:0,39,468 0/0:46,0:46:99:0,126,1430 0/0:15,0:15:42.13:0,42,508 0/0:16,1:17:42.12:0,42,495 0/0:14,1:15:42.10:0,42,477 0/0:13,0:13:36.08:0,36,423 0/0:26,0:26:72.21:0,72,870 0/0:28,0:28:81.22:0,81,945 0/0:16,0:16:42.13:0,42,497 0/0:32,0:32:84.25:0,84,1041 0/0:24,0:24:63.19:0,63,758 0/0:16,0:16:48.15:0,48,591 0/0:31,1:32:81.25:0,81,992 0/0:13,0:13:36.08:0,36,415 0/0:16,1:17:42.13:0,42,524 0/0:11,0:11:33.09:0,33,378 0/0:11,0:11:33.09:0,33,383 0/0:18,0:18:51.14:0,51,596 0/0:19,0:19:54.14:0,54,628 0/0:14,0:14:42.12:0,42,495 0/0:19,0:19:57.18:0,57,693 0/0:14,0:14:39.12:0,39,480 0/0:24,0:24:66.16:0,66,769 0/0:33,0:33:78.23:0,78,958 0/0:14,0:14:42.12:0,42,490 0/0:17,0:17:45.14:0,45,548 0/0:14,0:14:42.13:0,42,506 0/0:10,0:10:27.08:0,27,336 0/0:12,0:12:33.10:0,33,396 19 51850290 . G A 18989.07 . AC=49;AF=0.583;AN=84;BaseQRankSum=8.826;DP=1058;Dels=0.00;FS=0.977;HRun=0;HaplotypeScore=0.4889;InbreedingCoeff=0.0813;MQ=59.04;MQ0=0;MQRankSum=1.856;QD=23.13;ReadPosRankSum=1.185 GT:AD:DP:GQ:PL 0/1:7,15:22:99:446,0,169 1/1:0,28:28:75.22:914,75,0 1/1:0,18:18:51.15:621,51,0 1/1:0,48:48:99:1554,123,0 0/1:24,20:44:99:522,0,703 1/1:0,31:31:81.26:1022,81,0 1/1:0,33:33:75.21:944,75,0 1/1:0,38:38:96.30:1202,96,0 0/1:11,11:22:99:327,0,299 0/1:7,8:15:99:213,0,179 0/1:13,3:16:65.78:66,0,371 1/1:0,18:18:54.17:655,54,0 0/1:1,9:10:3.34:294,0,3 1/1:0,24:24:69.21:844,69,0 0/0:49,0:49:99:0,129,1515 0/1:16,11:27:99:310,0,414 0/0:16,0:16:42.12:0,42,501 0/1:10,11:21:99:312,0,263 0/1:14,12:26:99:262,0,416 1/1:0,22:22:60.14:707,60,0 0/0:36,0:36:93.26:0,93,1090 0/0:21,0:21:54.15:0,54,627 1/1:0,63:63:99:1930,153,0 0/1:20,15:35:99:420,0,512 0/1:7,17:24:99:476,0,149 0/0:35,0:35:93.27:0,93,1144 1/1:1,17:18:15.65:526,16,0 1/1:0,17:17:45.14:553,45,0 0/1:7,8:15:99:213,0,169 0/1:4,6:10:98.95:187,0,99 1/1:0,13:13:36.11:440,36,0 0/0:41,0:41:99:0,105,1219 0/0:28,0:28:75.21:0,75,875 0/1:11,14:25:99:412,0,242 0/0:11,0:11:33.09:0,33,378 0/1:11,4:15:98.48:98,0,334 0/1:15,11:26:99:327,0,414 0/1:9,10:19:99:256,0,254 0/1:8,14:22:99:441,0,198 1/1:0,22:22:54.17:689,54,0 0/1:9,6:15:99:163,0,261 1/1:0,19:19:54.15:642,54,0 19 51870771 . C A 342.56 . AC=2;AF=0.024;AN=84;BaseQRankSum=3.412;DP=667;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.3391;InbreedingCoeff=-0.0261;MQ=59.04;MQ0=0;MQRankSum=-0.376;QD=10.70;ReadPosRankSum=-0.173 GT:AD:DP:GQ:PL 0/0:19,0:19:57.12:0,57,632 0/0:13,0:13:36.10:0,36,434 0/0:11,0:11:33.08:0,33,361 0/0:29,0:29:78.24:0,78,982 0/0:20,0:20:57.16:0,57,717 0/1:7,7:14:99:225,0,245 0/0:13,0:13:39.12:0,39,496 0/1:12,6:18:99:180,0,370 0/0:15,0:15:39.11:0,39,457 0/0:8,0:8:21.07:0,21,260 0/0:12,0:12:30.09:0,30,369 0/0:13,0:13:39.12:0,39,465 0/0:3,0:3:9.03:0,9,105 0/0:19,0:19:51.11:0,51,586 0/0:49,0:49:99:0,114,1375 0/0:10,0:10:27.07:0,27,307 0/0:11,0:11:33.10:0,33,384 0/0:13,0:13:39.11:0,39,448 0/0:26,0:26:78.19:0,78,886 0/0:27,0:27:72.19:0,72,884 0/0:20,1:21:54.13:0,54,611 0/0:10,0:10:30.07:0,30,329 0/0:19,0:19:57.18:0,57,742 0/0:15,0:15:39.12:0,39,510 0/0:16,0:16:48.12:0,48,592 0/0:9,0:9:24.08:0,24,323 0/0:9,0:9:27.06:0,27,307 0/0:18,0:18:51.14:0,51,592 0/0:15,0:15:39.11:0,39,460 0/0:16,0:16:48.14:0,48,554 0/0:12,0:12:27.07:0,27,315 0/0:19,0:19:54.13:0,54,619 0/0:18,0:18:48.13:0,48,555 0/0:11,0:11:33.10:0,33,385 0/0:14,0:14:36.11:0,36,438 0/0:14,0:14:42.10:0,42,475 0/0:25,0:25:69.12:0,69,763 0/0:11,0:11:33.10:0,33,392 0/0:14,0:14:42.12:0,42,486 0/0:14,0:14:39.11:0,39,464 0/0:13,0:13:39.11:0,39,456 0/0:11,0:11:33.09:0,33,379 19 51919240 . C T 3442.22 . AC=16;AF=0.190;AN=84;BaseQRankSum=-11.464;DP=1816;Dels=0.00;FS=9.215;HRun=0;HaplotypeScore=1.6341;InbreedingCoeff=-0.2380;MQ=52.12;MQ0=0;MQRankSum=-20.193;QD=3.49;ReadPosRankSum=-0.883 GT:AD:DP:GQ:PL 0/0:31,0:31:90.28:0,90,1120 0/0:24,0:25:72.22:0,72,897 0/0:23,0:23:63.14:0,63,748 0/1:84,21:105:99:123,0,2763 0/1:84,19:103:99:210,0,2815 0/1:54,8:62:70.28:70,0,1839 0/1:37,6:43:35.91:36,0,1280 0/0:62,0:62:99:0,181,2309 0/0:28,0:28:75.23:0,75,943 0/0:21,0:21:60.18:0,60,720 0/0:23,0:24:63.17:0,63,744 0/1:23,3:26:24.79:25,0,676 0/1:17,10:27:99:172,0,507 0/0:19,0:19:57.13:0,57,674 0/0:71,0:71:99:0,196,2359 0/1:43,9:52:71.32:71,0,1419 0/1:25,6:31:37.63:38,0,814 0/0:31,0:31:90.27:0,90,1104 0/1:51,12:63:99:158,0,1496 0/1:60,18:78:99:330,0,1812 0/0:47,4:51:34.92:0,35,1406 0/0:40,0:40:99:0,111,1366 0/1:86,58:144:99:1149,0,2856 0/1:45,10:55:99:127,0,1456 0/0:57,0:57:99:0,163,2117 0/1:45,12:57:99:218,0,1447 0/0:31,0:31:93.26:0,93,1106 0/0:22,0:22:60.18:0,60,739 0/0:23,0:23:69.19:0,69,847 0/1:27,6:33:74.65:75,0,708 0/0:22,0:22:66.21:0,66,840 0/1:44,18:62:99:361,0,1399 0/1:29,15:44:99:280,0,970 0/0:22,0:22:63.18:0,63,766 0/0:27,7:34:7.42:0,7,850 0/0:17,0:17:45.13:0,45,548 0/0:52,0:52:99:0,132,1601 0/0:28,0:28:84.23:0,84,1020 0/0:25,0:25:69.20:0,69,858 0/0:21,0:21:54.17:0,54,680 0/0:21,0:21:60.19:0,60,749 0/0:30,0:30:87.25:0,87,1078 19 51919263 . G T 598.87 . AC=6;AF=0.071;AN=84;BaseQRankSum=-2.707;DP=1384;Dels=0.00;FS=4.896;HRun=1;HaplotypeScore=0.6597;InbreedingCoeff=-0.0905;MQ=52.97;MQ0=0;MQRankSum=-13.326;QD=2.19;ReadPosRankSum=-1.319 GT:AD:DP:GQ:PL 0/0:26,0:26:78.22:0,78,935 0/0:23,0:23:66.20:0,66,813 0/0:19,0:19:57.15:0,57,671 0/0:63,6:69:99:0,104,2250 0/1:53,8:61:98.27:98,0,1744 0/0:44,5:49:22.36:0,22,1390 0/0:25,3:28:12.61:0,13,859 0/0:44,0:44:99:0,123,1603 0/0:31,0:31:87.27:0,87,1081 0/0:16,1:17:48.14:0,48,571 0/0:21,0:21:54.11:0,54,611 0/0:20,0:20:60.18:0,60,719 0/1:16,5:21:99:112,0,491 0/0:23,0:23:69.17:0,69,816 0/0:66,0:66:99:0,184,2242 0/0:33,4:37:7.20:0,7,1012 0/0:20,2:22:30.56:0,31,668 0/0:22,0:22:66.20:0,66,815 0/0:50,5:55:34.12:0,34,1585 0/0:48,6:54:0.81:7,0,1538 0/0:41,2:43:46.42:0,46,1310 0/0:29,0:29:87.25:0,87,1057 0/1:66,21:87:99:287,0,2262 0/0:29,1:30:65.59:0,66,1093 0/0:48,0:48:99:0,141,1821 0/0:38,2:40:52.07:0,52,1273 0/0:26,0:26:72.22:0,72,872 0/0:21,0:21:60.18:0,60,736 0/0:20,0:20:57.17:0,57,689 0/1:22,3:25:10.73:11,0,706 0/0:19,0:19:54.17:0,54,688 0/1:40,7:49:84.84:85,0,1281 0/1:24,7:31:99:108,0,705 0/0:17,0:17:48.12:0,48,557 0/0:21,2:23:60.19:0,60,737 0/0:21,0:21:54.16:0,54,666 0/0:46,0:46:99:0,126,1491 0/0:24,0:24:72.22:0,72,873 0/0:23,0:23:69.17:0,69,806 0/0:17,0:17:51.16:0,51,632 0/0:16,0:16:48.15:0,48,592 0/0:20,0:20:57.18:0,57,695 19 51919267 . A G 387.28 . AC=5;AF=0.060;AN=84;BaseQRankSum=5.073;DP=1326;Dels=0.00;FS=5.353;HRun=3;HaplotypeScore=0.6422;InbreedingCoeff=-0.0736;MQ=53.33;MQ0=0;MQRankSum=-12.168;QD=1.59;ReadPosRankSum=-0.317 GT:AD:DP:GQ:PL 0/0:23,0:23:66.19:0,66,795 0/0:24,0:24:69.20:0,69,845 0/0:20,0:20:60.18:0,60,731 0/0:57,5:62:88.67:0,89,2010 0/1:55,7:62:60.41:60,0,1755 0/0:46,3:49:26.13:0,26,1408 0/0:23,1:24:39.59:0,40,818 0/0:40,0:40:99:0,114,1437 0/0:32,0:32:90.28:0,90,1099 0/0:15,0:15:42.13:0,42,517 0/0:22,0:22:66.19:0,66,782 0/0:21,0:21:63.20:0,63,779 0/1:14,5:19:99:116,0,458 0/0:23,0:23:69.19:0,69,816 0/0:60,0:60:99:0,172,2130 0/0:29,3:32:43.89:0,44,987 0/0:22,2:24:30.56:0,31,677 0/0:22,0:22:66.20:0,66,802 0/0:45,3:49:48.72:0,49,1519 0/0:45,5:50:1.31:5,0,1437 0/0:37,1:38:72.77:0,73,1307 0/0:29,0:29:87.27:0,87,1068 0/1:68,17:85:99:164,0,2247 0/0:29,1:30:68.59:0,69,1081 0/0:44,0:45:99:0,132,1667 0/0:36,2:38:46.05:0,46,1164 0/0:25,0:25:69.22:0,69,864 0/0:20,0:20:60.18:0,60,728 0/0:19,0:19:57.18:0,57,715 0/0:24,2:26:18.98:0,19,810 0/0:21,0:21:57.18:0,57,732 0/1:42,6:48:56.98:57,0,1426 0/1:24,5:29:84.78:85,0,723 0/0:16,0:16:45.12:0,45,536 0/0:22,1:23:60.19:0,60,741 0/0:21,0:21:48.15:0,48,630 0/0:42,0:42:99:0,111,1400 0/0:24,0:24:72.22:0,72,875 0/0:22,0:22:66.20:0,66,802 0/0:18,0:18:51.15:0,51,629 0/0:15,0:15:42.13:0,42,532 0/0:19,0:19:54.17:0,54,663 19 51919279 . A G 38.47 . AC=1;AF=0.012;AN=84;BaseQRankSum=4.880;DP=1225;Dels=0.00;FS=4.661;HRun=3;HaplotypeScore=0.7653;InbreedingCoeff=-0.0166;MQ=53.73;MQ0=0;MQRankSum=-9.761;QD=0.53;ReadPosRankSum=-0.784 GT:AD:DP:GQ:PL 0/0:21,0:21:63.19:0,63,735 0/0:17,0:17:45.14:0,45,554 0/0:19,0:19:57.17:0,57,664 0/0:53,4:57:70.58:0,71,1657 0/0:59,5:64:34.46:0,34,1876 0/0:41,0:41:99:0,117,1401 0/0:22,1:23:63.19:0,63,766 0/0:35,0:35:96.27:0,96,1143 0/0:28,0:28:72.19:0,72,846 0/0:15,0:15:42.13:0,42,499 0/0:21,0:21:63.18:0,63,732 0/0:22,1:23:32.76:0,33,724 0/0:10,1:11:3.47:0,3,323 0/0:26,0:26:75.22:0,75,884 0/0:57,0:57:99:0,159,1889 0/0:28,2:30:62.56:0,63,946 0/0:19,2:21:21.53:0,22,561 0/0:21,0:21:60.18:0,60,722 0/0:39,2:41:87.71:0,88,1318 0/0:42,3:45:43.50:0,43,1358 0/0:38,0:38:99:0,114,1316 0/0:25,0:25:72.21:0,72,849 0/1:59,12:72:84.63:85,0,1790 0/0:31,1:32:71.56:0,72,1029 0/0:43,0:43:99:0,123,1472 0/0:36,0:36:96.26:0,96,1143 0/0:24,0:24:63.19:0,63,743 0/0:17,0:17:48.14:0,48,567 0/0:18,0:18:54.15:0,54,620 0/0:22,2:24:12.95:0,13,705 0/0:23,0:23:63.19:0,63,768 0/0:42,2:44:58.95:0,59,1390 0/0:19,1:20:24.54:0,25,581 0/0:15,0:15:39.12:0,39,474 0/0:19,0:19:57.17:0,57,681 0/0:20,0:20:51.15:0,51,617 0/0:36,0:36:99:0,99,1196 0/0:24,0:24:66.20:0,66,787 0/0:23,0:23:69.20:0,69,816 0/0:19,1:20:54.16:0,54,647 0/0:18,0:18:51.15:0,51,610 0/0:17,0:18:51.15:0,51,608 19 51919321 . T C 120.74 . 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A T 6537.22 . 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G A 12175.15 . 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C T 8804.61 . 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G A 8272.57 . 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C T 5795.80 . 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C T 57426.45 . 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CACG C 429.57 . 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G T 747.73 . 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G A 14342.06 . 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GCA G 1075.57 . 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C A 1744.57 . 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A G 1795.25 . 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G T 291.76 . 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G T 757.89 . 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A G 4966.18 . 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A G 2260.51 . 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A G 132.12 . 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G A 17189.76 . AC=19;AF=0.226;AN=84;BaseQRankSum=-20.033;DP=9796;DS;Dels=0.00;FS=55.030;HRun=0;HaplotypeScore=1.8721;InbreedingCoeff=-0.0196;MQ=16.32;MQ0=5003;MQRankSum=8.778;QD=4.27;ReadPosRankSum=0.837 GT:AD:DP:GQ:PL 0/0:204,0:204:99:0,207,2140 0/0:233,0:233:99:0,204,2167 0/1:156,53:209:99:704,0,787 0/0:226,0:227:99:0,249,2597 0/0:241,0:241:99:0,276,2810 0/0:247,0:247:99:0,261,2675 0/1:183,51:234:99:935,0,994 0/0:243,0:243:99:0,234,2412 0/0:236,0:236:99:0,204,2118 0/0:221,0:221:99:0,174,1828 0/1:177,63:240:99:797,0,776 1/1:94,128:222:99:1897,125,0 0/1:193,54:247:99:701,0,900 1/1:120,108:228:23.33:1577,23,0 0/0:246,3:250:99:0,198,2031 0/0:219,0:219:99:0,168,1791 0/0:228,1:229:99:0,177,2126 0/0:199,0:199:99:0,186,1948 0/0:249,1:250:99:0,251,2875 0/1:191,58:250:99:736,0,1023 0/1:183,66:249:99:690,0,1003 0/1:164,65:229:99:956,0,1081 0/0:244,1:246:99:0,267,3011 0/1:188,61:249:99:977,0,985 0/1:104,146:250:19.58:2441,0,20 0/1:175,69:244:99:902,0,1355 0/0:231,0:232:99:0,225,2331 0/0:236,0:236:99:0,222,2229 0/0:246,0:247:99:0,216,2235 0/0:243,0:243:99:0,186,1875 0/1:158,65:223:99:859,0,904 0/1:181,68:250:99:733,0,1562 0/0:231,0:231:99:0,243,2567 0/0:203,1:204:99:0,133,1541 0/0:225,1:226:99:0,162,1947 0/0:223,0:223:99:0,213,2183 0/1:189,61:250:99:783,0,1453 0/0:211,0:212:99:0,201,2132 0/1:158,57:215:99:712,0,1208 0/0:233,0:233:99:0,213,2205 0/0:236,2:238:99:0,195,2026 0/1:179,56:235:99:791,0,1051 19 53989975 . C T 18198.82 . 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G A 16619.75 . 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G GAAAGA 105.04 . 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G A 7908.11 . 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T G 81.39 . 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G A 21469.17 . AC=17;AF=0.202;AN=84;BaseQRankSum=-0.546;DP=4345;DS;Dels=0.00;FS=4.436;HRun=0;HaplotypeScore=3.7356;InbreedingCoeff=0.0413;MQ=59.42;MQ0=0;MQRankSum=0.030;QD=17.80;ReadPosRankSum=2.033 GT:AD:DP:GQ:PL 0/0:77,0:77:99:0,220,2623 0/0:71,0:71:99:0,208,2420 0/0:74,0:74:99:0,211,2478 0/0:206,0:206:99:0,569,7274 0/0:184,0:184:99:0,536,6748 0/0:147,0:147:99:0,418,5357 0/0:123,1:124:99:0,302,4239 0/0:125,0:125:99:0,346,4476 0/1:43,41:84:99:1262,0,1156 0/1:32,43:75:99:1322,0,925 0/1:38,32:71:99:904,0,1077 0/1:38,41:79:99:1272,0,1085 0/0:60,0:60:99:0,165,1931 0/1:40,51:91:99:1551,0,1107 0/0:179,1:181:99:0,508,5980 0/1:33,29:62:99:861,0,922 0/0:80,0:80:99:0,235,2749 0/1:43,44:87:99:1314,0,1197 0/0:144,0:145:99:0,397,4657 0/0:133,0:133:99:0,382,4627 0/0:120,0:120:99:0,334,4015 0/0:82,0:82:99:0,232,2717 0/0:212,1:213:99:0,572,7735 0/0:109,0:109:99:0,289,3705 0/0:128,0:128:99:0,367,4699 0/0:90,0:90:99:0,256,3195 0/1:26,40:66:99:1260,0,657 0/1:35,51:87:99:1508,0,852 0/1:41,37:78:99:1049,0,1224 1/1:1,88:89:99:3071,219,0 1/1:0,68:68:99:2496,202,0 0/0:144,0:144:99:0,409,4833 0/1:57,42:99:99:1246,0,1653 0/0:75,0:75:99:0,214,2563 0/0:81,0:82:99:0,238,2787 0/0:76,0:76:99:0,220,2655 0/0:134,0:134:99:0,373,4416 0/1:49,42:91:99:1263,0,1359 0/0:86,0:86:99:0,253,2902 0/0:101,0:101:99:0,289,3382 0/1:42,37:79:99:1090,0,1262 0/0:92,0:92:99:0,265,3111 19 54627163 . A G 4707.92 . AC=39;AF=0.464;AN=84;BaseQRankSum=-14.696;DP=925;Dels=0.00;FS=375.996;HRun=2;HaplotypeScore=0.2787;InbreedingCoeff=-0.8604;MQ=57.27;MQ0=0;MQRankSum=-0.584;QD=5.55;ReadPosRankSum=-6.603 GT:AD:DP:GQ:PL 0/1:11,11:22:99:138,0,307 0/1:12,9:21:99:141,0,270 0/1:13,7:20:25.98:26,0,316 0/1:16,16:32:99:229,0,485 0/1:10,8:18:93.87:94,0,292 0/1:11,17:28:99:156,0,352 0/1:10,8:18:94.82:95,0,261 0/1:11,10:21:27.12:27,0,279 0/1:5,3:8:13.50:13,0,168 0/1:5,11:17:99:120,0,144 0/1:11,12:23:99:113,0,279 0/1:3,14:17:66.93:303,0,67 0/1:7,6:13:9.65:10,0,132 0/1:11,7:18:95.48:95,0,282 0/1:19,24:43:99:309,0,546 0/1:7,14:21:99:281,0,130 0/0:12,3:16:30.08:0,30,347 0/1:8,11:19:99:158,0,172 0/0:16,3:19:45.13:0,45,529 0/1:27,26:53:99:205,0,642 0/1:13,11:24:19.32:19,0,300 0/1:14,19:33:99:235,0,375 0/1:11,20:31:99:326,0,280 0/1:8,7:15:99:143,0,210 0/1:10,14:24:99:134,0,237 0/1:9,7:16:65.21:65,0,134 0/1:5,10:15:81.53:128,0,82 0/1:7,6:13:34.16:34,0,186 0/1:11,9:20:68.39:68,0,265 0/1:12,6:18:46.73:47,0,325 0/1:10,8:18:54.79:55,0,170 0/0:31,11:42:18.65:0,19,823 0/1:11,12:23:60.21:60,0,243 0/1:8,10:18:99:179,0,154 0/1:13,9:22:99:122,0,331 0/1:6,9:15:99:124,0,136 0/1:14,10:24:99:162,0,364 0/1:9,3:12:21.25:21,0,291 0/1:17,9:26:59.58:60,0,384 0/1:18,12:30:99:104,0,527 0/1:13,5:18:27.76:28,0,330 0/1:12,9:21:80.08:80,0,350 19 54629931 . T G 32.96 . AC=6;AF=0.071;AN=84;BaseQRankSum=-9.966;DP=508;Dels=0.00;FS=67.631;HRun=2;HaplotypeScore=0.3284;InbreedingCoeff=-0.1247;MQ=58.22;MQ0=1;MQRankSum=1.270;QD=0.43;ReadPosRankSum=-4.566 GT:AD:DP:GQ:PL 0/0:3,3:6:9.02:0,9,93 0/1:4,1:5:11.65:12,0,122 0/0:2,1:3:6.02:0,6,69 0/0:24,11:35:33.55:0,34,688 0/0:9,11:20:3.36:0,3,250 0/0:9,8:17:2.73:1,0,258 0/0:12,8:21:27.06:0,27,320 0/0:11,6:17:30.08:0,30,355 0/0:14,2:17:36.06:0,36,389 0/0:3,2:5:9.03:0,9,110 0/0:5,0:5:15.04:0,15,170 0/0:4,1:5:12.04:0,12,143 0/1:7,5:12:14.19:14,0,197 0/0:6,0:6:15.04:0,15,174 0/0:13,6:19:0.92:6,0,354 0/1:8,3:11:25.04:25,0,248 0/0:2,2:4:6.02:0,6,70 0/0:3,1:4:9.03:0,9,103 0/0:11,2:13:30.06:0,30,321 0/0:14,3:17:36.07:0,36,400 0/0:12,4:16:11.41:0,11,389 0/0:4,3:7:6.02:0,6,77 0/0:13,14:27:7.56:0,8,401 0/1:10,9:19:19.29:19,0,263 0/0:16,5:21:30.09:0,30,369 0/0:10,5:15:24.06:0,24,269 0/0:5,7:12:15.04:0,15,176 0/0:6,4:10:12:0,12,119 0/0:8,0:8:21.05:0,21,230 0/0:6,5:11:12.03:0,12,138 0/0:6,2:8:15.04:0,15,166 0/0:7,4:11:18.05:0,18,216 0/1:13,7:20:20.06:20,0,272 0/0:6,2:8:15.03:0,15,166 0/0:7,4:11:18.03:0,18,200 0/0:5,0:5:12.03:0,12,138 0/0:13,2:15:30.08:0,30,339 0/0:7,3:10:18.05:0,18,207 0/0:3,4:8:9.02:0,9,93 0/0:5,3:8:14.77:0,15,142 0/0:5,1:6:15.03:0,15,163 0/1:4,6:10:40.25:40,0,92 19 54647434 . C T 1829.57 . AC=1;AF=0.012;AN=84;BaseQRankSum=6.042;DP=3905;DS;Dels=0.00;FS=1.489;HRun=0;HaplotypeScore=2.4582;InbreedingCoeff=-0.0120;MQ=59.28;MQ0=0;MQRankSum=-2.557;QD=12.45;ReadPosRankSum=0.314 GT:AD:DP:GQ:PL 0/0:82,0:83:99:0,223,2478 0/0:86,0:86:99:0,232,2578 0/0:98,0:98:99:0,241,2773 0/0:106,0:106:99:0,268,3217 0/0:104,0:104:99:0,274,3331 0/0:91,0:91:99:0,241,2865 0/0:73,0:73:99:0,183,2208 0/0:96,1:97:99:0,225,3115 0/0:90,0:90:99:0,241,2719 0/0:73,0:73:99:0,205,2265 0/0:72,0:72:99:0,192,2123 0/0:78,0:78:99:0,205,2326 0/0:80,0:80:99:0,207,2317 0/0:77,0:77:99:0,211,2362 0/0:235,0:236:99:0,610,6866 0/0:75,0:75:99:0,211,2320 0/0:64,0:64:99:0,174,1918 0/0:68,0:69:99:0,195,2115 0/0:146,1:147:99:0,339,4166 0/1:77,70:147:99:1876,0,1905 0/0:121,0:121:99:0,328,3694 0/0:125,0:125:99:0,325,3650 0/0:126,0:126:99:0,337,4082 0/0:70,0:70:99:0,193,2319 0/0:72,0:72:99:0,187,2335 0/0:88,0:88:99:0,208,2589 0/0:63,0:63:99:0,165,1902 0/0:82,0:82:99:0,214,2394 0/0:67,0:67:99:0,193,2166 0/0:63,0:63:99:0,177,1970 0/0:83,0:83:99:0,205,2351 0/0:134,0:134:99:0,334,3927 0/0:103,0:103:99:0,265,2963 0/0:63,0:63:99:0,177,1993 0/0:83,0:83:99:0,217,2425 0/0:82,0:82:99:0,205,2304 0/0:131,0:132:99:0,334,3789 0/0:65,0:65:99:0,183,2017 0/0:98,0:98:99:0,274,3012 0/0:90,0:90:99:0,238,2649 0/0:70,0:70:99:0,180,2005 0/0:78,0:79:99:0,211,2322 19 54656058 . G A 1397.82 . AC=1;AF=0.012;AN=84;BaseQRankSum=-2.185;DP=2700;Dels=0.00;FS=4.510;HRun=1;HaplotypeScore=2.1378;InbreedingCoeff=-0.0120;MQ=58.91;MQ0=0;MQRankSum=-1.276;QD=15.19;ReadPosRankSum=-0.323 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,147,1819 0/0:52,0:52:99:0,150,1894 0/0:33,0:33:96.31:0,96,1234 0/0:151,0:151:99:0,445,5819 0/0:136,0:136:99:0,382,5065 0/0:100,0:100:99:0,280,3716 0/0:91,0:91:99:0,259,3381 0/0:97,0:97:99:0,280,3706 0/0:47,0:47:99:0,135,1691 0/0:25,0:25:69.22:0,69,859 0/0:31,0:31:81.24:0,81,1007 0/0:36,0:36:99:0,105,1286 0/0:38,0:38:99:0,105,1315 0/0:50,0:50:99:0,138,1738 0/0:160,0:160:99:0,439,5630 0/0:51,0:52:99:0,144,1820 0/0:39,0:39:99:0,111,1428 0/0:35,0:35:99:0,99,1248 0/0:76,0:77:99:0,220,2730 0/0:82,0:82:99:0,235,2926 0/0:97,0:97:99:0,268,3349 0/0:68,0:68:99:0,184,2314 0/0:143,0:143:99:0,397,5272 0/0:63,0:63:99:0,180,2286 0/1:44,48:92:99:1444,0,1399 0/0:82,0:82:99:0,229,3072 0/0:21,0:21:63.20:0,63,800 0/0:44,0:44:99:0,120,1510 0/0:41,0:41:99:0,120,1498 0/0:43,0:43:99:0,114,1431 0/0:43,0:43:99:0,126,1581 0/0:79,0:79:99:0,217,2729 0/0:64,0:64:99:0,184,2292 0/0:41,0:41:99:0,117,1462 0/0:42,0:42:99:0,123,1549 0/0:45,0:45:99:0,117,1498 0/0:110,0:110:99:0,304,3779 0/0:45,0:45:99:0,129,1601 0/0:46,0:46:99:0,135,1685 0/0:39,0:39:99:0,111,1415 0/0:35,0:35:99:0,99,1230 0/0:35,0:35:99:0,102,1253 19 54664209 . G C 50601.45 . AC=48;AF=0.571;AN=84;BaseQRankSum=4.761;DP=2770;Dels=0.00;FS=9.173;HRun=0;HaplotypeScore=1.4195;InbreedingCoeff=-0.1667;MQ=58.81;MQ0=0;MQRankSum=1.977;QD=21.78;ReadPosRankSum=0.548 GT:AD:DP:GQ:PL 0/1:26,27:53:99:810,0,753 0/1:22,18:40:99:540,0,668 0/1:11,14:25:99:438,0,346 0/1:93,93:186:99:2600,0,2596 0/0:153,1:154:99:0,383,5495 0/1:52,68:120:99:1927,0,1449 0/0:107,0:107:99:0,268,3592 1/1:0,112:112:99:3981,298,0 0/1:23,17:40:99:509,0,696 0/1:22,16:38:99:494,0,663 1/1:0,32:32:90.28:1145,90,0 0/1:15,19:34:99:493,0,437 0/1:21,20:41:99:599,0,565 0/1:20,21:41:99:658,0,559 0/1:69,78:147:99:2181,0,1886 1/1:0,24:24:69.22:872,69,0 0/1:16,20:36:99:604,0,473 0/1:15,14:29:99:410,0,450 0/1:49,44:93:99:1259,0,1265 1/1:0,106:106:99:3671,292,0 0/1:51,55:107:99:1631,0,1456 0/0:61,0:61:99:0,172,2146 1/1:0,167:167:99:6257,464,0 0/1:33,43:76:99:1268,0,871 1/1:0,98:98:99:3417,256,0 0/1:48,43:91:99:1349,0,1316 0/1:16,13:29:99:398,0,470 1/1:1,28:29:49.90:989,50,0 0/1:11,12:23:99:389,0,292 0/0:46,0:46:99:0,135,1649 0/1:25,20:45:99:501,0,741 0/1:48,39:87:99:1126,0,1458 0/1:31,27:58:99:789,0,903 1/1:0,31:31:90.28:1126,90,0 1/1:1,34:35:67.07:1224,67,0 1/1:0,42:42:99:1440,114,0 1/1:0,89:89:99:2999,238,0 0/1:25,13:38:99:372,0,790 1/1:0,34:34:99:1267,102,0 0/0:43,0:43:99:0,123,1545 0/0:36,0:36:99:0,108,1305 0/1:20,27:47:99:869,0,576 19 54671983 . G A 137.56 . AC=15;AF=0.192;AN=78;BaseQRankSum=-3.415;DP=187;Dels=0.00;FS=33.573;HRun=2;HaplotypeScore=0.4510;InbreedingCoeff=-0.1571;MQ=57.81;MQ0=0;MQRankSum=1.264;QD=1.53;ReadPosRankSum=-1.991 GT:AD:DP:GQ:PL 0/0:2,0:2:3.01:0,3,39 0/1:4,2:6:17.66:18,0,67 0/0:2,2:4:6.02:0,6,72 0/0:8,2:10:15.03:0,15,164 0/1:3,2:5:23.48:23,0,56 0/0:4,0:4:6.02:0,6,72 0/0:1,1:2:2.98:0,3,22 0/0:2,2:4:6.01:0,6,69 ./. 0/0:1,0:1:3.01:0,3,39 0/0:1,1:2:3.01:0,3,39 0/0:1,1:2:3.01:0,3,37 ./. 1/1:2,3:5:3:25,3,0 0/1:13,3:16:1.46:1,0,313 0/0:3,0:3:3.01:0,3,37 0/0:3,0:3:6.02:0,6,72 0/0:3,0:3:6.02:0,6,77 0/1:4,4:8:17.59:18,0,96 0/1:3,2:5:22.56:23,0,40 0/1:4,3:7:15.67:16,0,66 0/0:2,2:4:3.01:0,3,36 0/0:3,1:4:6.02:0,6,81 0/0:6,0:6:12.03:0,12,134 0/0:4,2:6:8.97:0,9,71 0/0:2,0:2:6.02:0,6,79 0/0:1,0:1:3:0,3,29 0/1:4,1:5:24.41:24,0,67 0/0:2,0:2:3.01:0,3,34 1/1:1,2:3:3.01:36,3,0 0/0:3,1:4:6.01:0,6,65 0/0:7,0:7:15.05:0,15,192 0/1:7,2:9:44.19:44,0,187 0/0:3,1:4:6.02:0,6,76 0/0:3,1:4:3.01:0,3,39 0/1:4,3:7:15.67:16,0,61 0/1:6,1:7:13.51:14,0,148 0/0:2,1:3:3:0,3,25 0/1:5,2:7:7.65:8,0,134 0/0:3,1:4:6.02:0,6,75 0/0:2,0:2:6.02:0,6,71 ./. 19 54676754 . G C 2056.65 . 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G GC 5789.71 . 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C T 68751.98 . 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G GC 38423.78 . 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G T 14.26 . 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C T 283.67 . 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C T 674.09 . 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A G 721.54 . 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A G 2106.80 . 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G A 2100.01 . 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A T 1584.72 . 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C G 4540.40 . 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T G 4036.04 . 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C A 3937.34 . 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C G 4850.33 . 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C G 835.44 . 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A G 20205.60 . 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G A 3101.76 . 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T C 480.10 . 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G C 17.78 . 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G C 11545.09 . 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A G 13334.77 . 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G A 16293.82 . 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G A 1965.33 . 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T C 600.26 . 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C T 6503.96 . 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C T 116.79 . 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G C 24.06 . 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G A 8561.89 . 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C T 40472.15 . 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G C 2138.74 . 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A G 68.57 . 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G A 13246.40 . AC=42;AF=0.500;AN=84;BaseQRankSum=-15.985;DP=963;Dels=0.00;FS=4.958;HRun=2;HaplotypeScore=0.6004;InbreedingCoeff=0.1427;MQ=58.74;MQ0=0;MQRankSum=1.453;QD=21.06;ReadPosRankSum=1.426 GT:AD:DP:GQ:PL 0/1:13,7:20:99:198,0,373 1/1:0,33:33:81.25:1019,81,0 0/1:12,9:21:99:273,0,323 0/1:20,14:34:99:379,0,634 0/0:35,0:35:96.31:0,96,1291 1/1:0,13:13:39.12:477,39,0 1/1:0,14:14:39.10:469,39,0 1/1:0,31:31:84.26:1044,84,0 1/1:0,24:24:66.19:795,66,0 0/1:8,8:16:99:246,0,249 1/1:0,16:16:45.14:546,45,0 0/1:9,18:27:99:516,0,210 0/1:9,5:15:99:116,0,297 0/0:25,0:25:72.23:0,72,916 0/0:65,0:66:99:0,147,1945 0/1:9,8:17:99:210,0,272 0/1:11,5:16:95.02:95,0,345 0/0:21,0:21:60.18:0,60,760 0/0:32,0:32:84.26:0,84,1073 0/0:27,0:27:66.21:0,66,858 0/0:29,0:29:72.23:0,72,926 0/0:24,0:24:66.21:0,66,856 1/1:0,29:29:75.23:935,75,0 0/1:6,1:7:18.92:19,0,194 1/1:0,14:14:36.11:448,36,0 0/1:10,3:13:82.83:83,0,287 0/0:6,0:6:18.06:0,18,229 0/0:23,0:23:60.19:0,60,772 0/0:22,0:22:63.20:0,63,801 1/1:0,26:26:72.22:883,72,0 1/1:0,16:16:42.12:513,42,0 0/1:22,13:35:99:336,0,640 1/1:0,25:25:69.20:824,69,0 0/0:24,0:24:69.22:0,69,882 0/1:5,11:16:99:343,0,143 0/1:14,12:26:99:352,0,399 0/1:13,13:26:99:336,0,413 0/1:9,8:17:99:229,0,292 0/1:8,20:28:99:620,0,224 0/1:14,7:21:99:166,0,441 1/1:0,18:18:51.15:612,51,0 0/1:9,6:15:99:166,0,292 19 54969169 . C T 1943.23 . 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G C 2240.93 . 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A G 1205.62 . 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A G 683.08 . 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C A 12591.66 . 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T C 3208.25 . 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G T 2336.79 . 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A G 2290.29 . 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G C 4614.18 . 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T C 4102.82 . 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C T 2509.23 . 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T C 2329.29 . 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C G 2102.46 . 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C T 2295.41 . 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G T 475.64 . 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C T 528.61 . 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G A 3772.37 . 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C T 470.15 . AC=33;AF=0.825;AN=40;BaseQRankSum=-1.651;DP=3673;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0367;InbreedingCoeff=0.1069;MQ=2.57;MQ0=3596;MQRankSum=0.079;QD=0.29;ReadPosRankSum=-0.555 GT:AD:DP:GQ:PL ./. ./. ./. ./. 0/1:69,38:107:10.68:11,0,68 1/1:47,36:83:3:27,3,0 1/1:1,78:79:5.99:49,6,0 1/1:42,49:91:3:27,3,0 ./. ./. 0/0:57,0:57:2.99:0,3,23 1/1:0,51:51:3:27,3,0 1/1:0,25:57:2.99:23,3,0 1/1:0,70:70:5.99:49,6,0 0/1:125,111:237:10.68:11,0,68 1/1:43,30:73:3:27,3,0 1/1:2,76:78:5.99:49,6,0 1/1:29,41:70:3:27,3,0 ./. 0/0:142,0:142:11.98:0,12,99 1/1:62,67:130:3:27,3,0 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 1/1:49,29:78:2.99:23,3,0 1/1:49,34:83:6:53,6,0 ./. 1/1:0,113:113:6:53,6,0 0/1:1,70:71:1.76:22,3,0 1/1:0,75:75:3:27,3,0 1/1:49,30:79:2.99:23,3,0 ./. ./. 19 55237677 . C T 61.24 . 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C A 31137.14 . 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C T 6645.07 . AC=4;AF=0.053;AN=76;BaseQRankSum=6.089;DP=3498;DS;Dels=0.00;FS=22.502;HRun=0;HaplotypeScore=7.3495;InbreedingCoeff=0.4291;MQ=38.90;MQ0=17;MQRankSum=6.953;QD=18.99;ReadPosRankSum=0.649 GT:AD:DP:GQ:PL 0/0:72,0:72:99:0,199,2275 0/0:62,0:62:99:0,162,1904 0/0:128,1:129:99:0,321,3937 0/0:63,0:63:99:0,174,1741 ./. 0/0:187,0:187:99:0,475,5923 0/0:167,0:167:99:0,421,5227 0/0:166,0:166:99:0,427,5346 ./. ./. ./. 0/0:101,0:101:99:0,286,3018 0/0:72,1:73:99:0,177,1760 0/0:84,0:84:99:0,235,2673 0/0:250,0:250:99:0,640,7088 0/0:51,0:51:99:0,138,1374 0/0:108,0:108:99:0,295,3206 0/0:45,0:45:99:0,132,1252 1/1:0,79:80:99:2544,211,0 0/1:68,80:148:99:2176,0,1402 0/0:134,0:135:99:0,318,3234 0/0:95,0:95:99:0,271,2908 0/0:130,0:130:99:0,345,3475 0/0:45,0:45:99:0,123,1188 0/0:42,0:42:99:0,117,1179 0/0:100,0:100:99:0,267,2639 0/0:33,0:33:90.12:0,90,884 0/0:44,0:44:99:0,117,1147 0/0:67,0:67:99:0,192,1981 0/0:62,0:62:99:0,165,1917 0/0:46,0:46:99:0,129,1265 0/0:114,0:114:99:0,300,2992 0/0:103,0:103:99:0,280,2987 0/0:46,0:46:99:0,123,1441 0/0:1,0:1:3.01:0,3,32 0/0:114,0:114:99:0,301,3257 0/0:157,0:157:99:0,397,4366 0/0:37,0:37:99:0,99,956 0/1:53,69:122:99:1924,0,1367 0/0:58,0:58:99:0,162,1808 0/0:110,0:110:99:0,298,3456 0/0:51,0:51:99:0,138,1629 19 55246812 . G C 3445.85 . AC=5;AF=0.066;AN=76;BaseQRankSum=3.609;DP=1678;DS;Dels=0.00;FS=27.363;HRun=2;HaplotypeScore=0.3288;InbreedingCoeff=-0.0768;MQ=20.72;MQ0=710;MQRankSum=8.341;QD=10.16;ReadPosRankSum=1.733 GT:AD:DP:GQ:PL 0/0:28,0:28:66.18:0,66,774 0/0:28,0:29:42.10:0,42,479 0/1:19,16:35:99:192,0,363 0/0:47,0:47:39.05:0,39,404 ./. 0/1:35,30:65:99:647,0,504 0/0:60,0:60:99:0,99,1136 0/1:24,25:49:99:582,0,345 ./. ./. 0/0:12,0:12:3:0,3,27 0/0:40,0:40:51.10:0,51,545 0/0:32,0:32:38.99:0,39,341 0/0:43,0:43:66.12:0,66,712 0/1:61,81:142:99:1575,0,408 0/0:22,0:22:17.97:0,18,150 0/1:22,26:48:28.91:450,0,29 0/0:27,0:27:21.01:0,21,187 0/0:58,0:58:78.17:0,78,869 0/0:49,0:49:93.15:0,93,986 0/0:63,0:63:54.03:0,54,495 0/0:43,0:43:78.15:0,78,859 0/0:78,0:78:78.07:0,78,758 0/0:26,0:26:24.02:0,24,233 0/0:33,0:33:24.03:0,24,241 0/0:43,1:44:57.03:0,57,512 0/0:15,0:15:11.99:0,12,103 0/0:24,0:24:18.01:0,18,160 0/0:34,0:34:48.09:0,48,515 0/0:34,0:34:30.04:0,30,325 0/0:24,0:24:15:0,15,133 0/0:45,0:45:42.04:0,42,404 0/0:34,0:34:48.09:0,48,519 0/0:32,0:32:33.09:0,33,389 ./. 0/0:41,0:41:48.05:0,48,475 0/0:60,0:60:90.20:0,90,989 0/0:23,0:23:17.99:0,18,155 0/0:51,0:51:72.18:0,72,828 0/0:35,0:35:42.09:0,42,446 0/0:49,0:50:99:0,99,1118 0/0:37,0:37:48.12:0,48,544 19 55250962 . T G 409.92 . AC=9;AF=0.110;AN=82;BaseQRankSum=8.266;DP=7261;DS;Dels=0.00;FS=23.943;HRun=1;HaplotypeScore=1.2703;InbreedingCoeff=0.4152;MQ=11.22;MQ0=4586;MQRankSum=-2.726;QD=0.41;ReadPosRankSum=-0.431 GT:AD:DP:GQ:PL 0/0:114,0:114:65.82:0,66,580 0/0:126,0:126:74.72:0,75,613 0/0:150,0:150:62.85:0,63,562 0/0:250,0:250:99:0,222,2075 0/0:93,0:93:5.97:0,6,45 0/0:246,0:246:99:0,191,1658 0/0:249,1:250:99:0,242,2119 0/0:248,0:248:99:0,141,1255 ./. 0/1:74,6:80:0.52:86,9,0 0/1:64,10:74:0.97:86,6,0 0/0:174,0:174:99:0,144,1193 0/0:149,2:152:99:0,120,967 0/0:146,1:147:99:0,126,1107 0/0:249,1:250:99:0,243,2238 0/0:99,0:99:47.85:0,48,403 0/0:193,0:193:80.78:0,81,695 0/0:107,1:108:56.86:0,57,487 0/0:170,0:170:99:0,105,891 0/0:249,1:250:99:0,251,2307 0/0:248,2:250:99:0,203,1811 0/0:166,0:166:99:0,126,1222 0/0:249,1:250:99:0,392,3293 0/0:240,9:249:44.30:0,44,852 0/0:236,14:250:28.43:0,28,1312 0/0:250,0:250:99:0,263,2250 0/1:114,10:124:18.20:18,0,267 0/1:161,12:173:84.95:85,0,356 0/0:159,1:160:99:0,158,1220 0/0:146,10:156:13.52:0,14,531 0/0:141,0:141:50.85:0,51,433 0/0:250,0:250:99:0,278,2469 0/0:179,0:179:99:0,147,1301 0/1:97,7:104:27.09:27,0,368 1/1:89,21:110:17.97:174,18,0 0/0:157,0:157:99:0,144,1216 0/0:248,1:249:99:0,206,1835 0/1:165,14:179:63.32:63,0,371 0/0:175,0:175:99:0,123,1027 0/0:139,8:147:64.08:0,64,695 0/0:149,0:151:99:0,125,1009 0/1:153,11:164:12.64:13,0,489 19 55281315 . G T 37871.49 . AC=28;AF=0.350;AN=80;BaseQRankSum=-15.172;DP=3465;Dels=0.00;FS=18.067;HRun=1;HaplotypeScore=2.2159;InbreedingCoeff=0.2308;MQ=50.86;MQ0=45;MQRankSum=4.331;QD=19.30;ReadPosRankSum=-0.381 GT:AD:DP:GQ:PL 0/0:91,0:91:99:0,238,2928 0/0:88,0:88:99:0,244,2961 0/0:84,0:84:99:0,223,2754 1/1:1,58:59:99:1841,119,0 ./. 0/0:103,0:103:99:0,283,3736 0/0:77,1:78:99:0,180,2665 0/0:94,0:94:99:0,244,3194 ./. 0/0:44,0:44:99:0,105,1304 0/0:40,0:40:99:0,111,1359 0/1:52,39:91:99:1022,0,1534 1/1:1,72:73:99:2528,211,0 0/0:99,0:99:99:0,274,3350 0/1:103,134:238:99:3849,0,2877 1/1:0,45:45:99:1470,123,0 0/1:41,45:86:99:1256,0,1157 1/1:0,35:35:99:1186,99,0 0/0:83,0:83:99:0,223,2706 0/1:81,62:143:99:1611,0,2468 1/1:0,103:103:99:3384,280,0 0/1:49,32:81:99:781,0,1480 1/1:0,107:107:99:3658,295,0 0/0:62,0:62:99:0,159,2000 0/1:34,49:83:99:1344,0,885 0/1:32,29:61:99:777,0,972 0/1:38,33:71:99:916,0,1026 0/1:47,34:81:99:928,0,1121 0/1:39,38:77:99:1084,0,1054 0/0:76,0:76:99:0,196,2353 0/1:34,44:78:99:1235,0,877 1/1:0,149:149:99:4813,394,0 0/1:54,48:102:99:1298,0,1517 0/0:30,0:30:84.25:0,84,1039 0/0:51,0:51:99:0,117,1462 0/0:91,0:91:99:0,253,3096 0/1:60,70:130:99:1913,0,1539 0/1:34,35:69:99:979,0,867 0/0:101,0:101:99:0,247,3043 0/0:93,0:93:99:0,250,3037 0/0:86,0:86:99:0,232,2853 0/0:108,0:108:99:0,295,3638 19 55333096 . T C 5616.73 . AC=16;AF=0.190;AN=84;BaseQRankSum=26.736;DP=3888;DS;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.1806;InbreedingCoeff=0.3803;MQ=16.66;MQ0=1719;MQRankSum=-5.225;QD=5.28;ReadPosRankSum=0.486 GT:AD:DP:GQ:PL 0/0:78,3:81:68.91:0,69,597 0/0:71,1:72:41.93:0,42,347 0/1:51,47:98:99:344,0,351 0/0:123,0:123:99:0,204,1986 0/0:119,0:119:99:0,192,1834 0/1:51,66:117:99:733,0,663 0/0:82,0:82:99:0,111,1103 0/1:37,44:81:99:544,0,500 0/1:41,47:88:99:360,0,459 0/1:47,43:90:99:286,0,479 1/1:26,45:71:17.24:308,17,0 1/1:18,53:71:71.93:641,72,0 0/1:40,43:83:99:307,0,299 0/0:62,1:63:62.92:0,63,546 0/0:182,2:184:99:0,177,1623 0/0:71,1:72:56.91:0,57,486 0/0:93,1:94:95.97:0,96,878 0/1:42,35:77:99:209,0,359 1/1:28,79:107:87.02:821,87,0 0/0:109,1:111:99:0,120,1088 0/0:161,1:162:99:0,201,1862 0/0:106,0:106:99:0,120,1131 0/0:112,0:112:99:0,168,1602 0/0:68,2:70:26.60:0,27,519 0/0:71,3:74:87.04:0,87,845 0/0:74,1:75:81.01:0,81,760 0/0:80,3:83:65.53:0,66,839 0/0:102,0:102:99:0,120,1052 0/0:76,2:78:93.05:0,93,887 0/0:67,1:68:71.85:0,72,605 1/1:14,50:64:62.97:574,63,0 0/0:103,3:106:80.56:0,81,1005 0/0:106,0:106:99:0,123,1156 0/0:83,1:85:56.50:0,56,730 0/0:64,1:65:38.51:0,39,587 0/1:50,66:116:99:491,0,404 0/0:84,0:84:50.98:0,51,452 0/0:70,0:70:77.97:0,78,709 0/0:79,0:79:74.95:0,75,667 0/0:114,2:117:99:0,150,1319 0/0:83,0:84:99:0,102,889 0/0:98,0:98:95.97:0,96,869 19 55333139 . G C 1988.08 . AC=12;AF=0.143;AN=84;BaseQRankSum=-16.509;DP=3750;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.2756;InbreedingCoeff=0.6087;MQ=13.26;MQ0=2288;MQRankSum=-2.190;QD=3.01;ReadPosRankSum=-2.710 GT:AD:DP:GQ:PL 0/0:73,0:73:32.98:0,33,293 0/0:67,0:67:15.02:0,15,155 0/1:50,40:90:99:240,0,195 0/0:118,0:118:99:0,99,938 0/0:103,0:103:99:0,126,1233 0/0:100,0:100:93.07:0,93,916 0/0:69,0:69:63:0,63,592 0/0:62,0:62:51.04:0,51,504 0/1:48,48:96:99:223,0,329 0/0:74,0:74:68.93:0,69,614 1/1:22,47:70:32.93:271,33,0 1/1:23,50:73:41.98:370,42,0 0/1:36,36:72:94.23:94,0,227 0/0:62,1:63:35.98:0,36,315 0/0:216,0:217:99:0,111,1065 0/0:77,0:77:41.94:0,42,362 0/0:100,1:102:71.96:0,72,652 0/1:48,42:90:99:220,0,223 1/1:37,69:106:42.01:386,42,0 0/0:107,0:107:72.03:0,72,677 0/0:148,0:148:99:0,129,1159 0/0:103,0:103:81.03:0,81,762 0/0:104,0:104:89.99:0,90,835 0/0:68,0:68:27.02:0,27,268 0/0:71,0:71:42:0,42,388 0/0:66,0:66:45.04:0,45,452 0/0:64,0:64:59.93:0,60,511 0/0:97,0:97:80.84:0,81,675 0/0:76,0:76:84.01:0,84,788 0/0:71,0:72:50.98:0,51,473 1/1:18,46:64:41.92:352,42,0 0/0:113,0:113:54.04:0,54,547 0/0:115,0:115:92.93:0,93,852 0/0:73,0:73:41.95:0,42,366 0/0:68,0:68:68.97:0,69,652 0/0:109,0:109:83.92:0,84,751 0/0:102,0:102:53.94:0,54,481 0/0:66,0:66:44.98:0,45,399 0/0:89,0:90:53.95:0,54,474 0/0:81,0:81:62.93:0,63,544 0/0:78,0:78:71.98:0,72,678 0/0:93,0:93:77.89:0,78,670 19 55333246 . C T 1238.53 . AC=31;AF=0.397;AN=78;BaseQRankSum=8.414;DP=5059;DS;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.1343;InbreedingCoeff=0.2221;MQ=4.45;MQ0=4824;MQRankSum=-0.349;QD=0.50;ReadPosRankSum=-0.674 GT:AD:DP:GQ:PL 0/0:96,0:96:2.98:0,3,22 0/0:108,0:108:9:0,9,81 0/0:146,0:146:11.98:0,12,104 0/0:184,0:184:12.01:0,12,126 0/1:76,81:158:14.66:83,0,15 0/0:164,0:165:14.99:0,15,129 ./. 0/1:69,53:122:34.36:34,0,70 0/1:57,45:102:52.03:95,0,52 0/1:40,39:79:17.69:39,0,18 0/0:110,0:110:8.98:0,9,74 0/0:105,0:105:5.99:0,6,49 1/1:28,33:61:6:51,6,0 1/1:49,38:87:11.99:103,12,0 0/0:250,0:250:15.01:0,15,136 1/1:45,44:89:6:58,6,0 0/0:118,0:118:26.98:0,27,237 0/0:100,1:101:6:0,6,53 0/0:149,0:152:6.01:0,6,57 1/1:99,89:189:9.01:90,9,0 0/1:86,54:140:9.70:10,0,86 0/0:100,0:100:14.98:0,15,129 0/0:178,0:178:15:0,15,133 0/0:120,0:120:3.01:0,3,33 0/1:83,75:158:1.76:27,3,0 ./. 1/1:1,74:75:9.01:87,9,0 0/1:44,44:88:33.36:33,0,68 0/1:47,39:86:47.79:48,0,65 0/0:96,1:97:5.99:0,6,54 0/0:86,0:86:5.98:0,6,48 1/1:68,67:136:12:105,12,0 0/1:71,64:135:43.16:95,0,43 1/1:51,45:96:9.02:96,9,0 0/1:43,39:82:1.76:25,3,0 0/1:56,65:122:14.70:60,0,15 1/1:86,89:175:6:51,6,0 ./. 1/1:41,47:88:9.01:87,9,0 0/1:56,51:107:37.24:118,0,37 0/1:49,52:101:36.35:36,0,41 0/0:130,0:130:12:0,12,105 19 55333275 . G T 892.86 . 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G A 486.46 . 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C T 114169.26 . 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G T 2437.02 . 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G A 6425.56 . 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G A 14664.04 . 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C A 62773.76 . 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GCGGAGCTGATCCGAGAGGACATCCA G 2213.46 . 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C G 1116.06 . 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A G 62.51 . 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C G 1398.47 . AC=19;AF=0.226;AN=84;BaseQRankSum=-6.092;DP=351;Dels=0.00;FS=5.065;HRun=0;HaplotypeScore=0.1906;InbreedingCoeff=0.0281;MQ=59.18;MQ0=0;MQRankSum=-0.534;QD=11.37;ReadPosRankSum=0.738 GT:AD:DP:GQ:PL 0/0:6,0:6:15.05:0,15,193 0/0:8,0:8:24.08:0,24,302 0/0:7,0:7:18.06:0,18,240 0/1:7,5:12:99:156,0,215 0/1:9,8:17:99:167,0,287 0/0:10,0:10:27.08:0,27,351 0/0:7,0:7:21.07:0,21,284 0/0:10,0:10:27.09:0,27,365 0/0:7,0:7:15.05:0,15,206 0/0:1,0:1:3.01:0,3,39 0/0:6,0:6:18.06:0,18,230 1/1:0,6:6:18.05:210,18,0 0/1:1,4:5:29.55:67,0,30 0/1:4,4:8:91.70:92,0,99 0/0:25,0:25:60.18:0,60,766 0/0:6,0:6:15.05:0,15,197 0/1:7,1:8:6.61:7,0,206 0/1:2,5:7:53.64:156,0,54 0/1:10,2:12:41.14:41,0,272 0/0:15,0:15:36.12:0,36,471 1/1:0,4:4:9.03:110,9,0 0/1:3,3:6:67.51:68,0,102 0/0:11,0:11:27.09:0,27,372 0/1:4,3:7:80.72:81,0,109 0/1:3,3:6:95.96:96,0,104 0/0:10,0:10:27.09:0,27,368 0/0:4,0:4:12.04:0,12,151 0/0:11,0:11:27.08:0,27,346 0/1:4,3:7:88.27:88,0,105 0/0:2,0:2:6.02:0,6,71 0/0:6,0:6:15.05:0,15,184 0/0:16,0:16:36.12:0,36,488 0/0:13,0:13:33.10:0,33,422 0/1:5,1:6:17.45:17,0,144 0/1:1,1:2:32.56:33,0,33 0/0:11,0:11:27.09:0,27,360 0/0:4,0:4:12.04:0,12,153 0/0:10,0:10:21.07:0,21,285 0/0:9,0:9:21.05:0,21,261 0/1:3,5:8:82.28:133,0,82 0/1:0,2:2:0.97:56,6,0 0/0:13,0:13:27.09:0,27,366 19 55623900 . A AG 721.21 . AC=23;AF=0.274;AN=84;BaseQRankSum=4.728;DP=1035;FS=740.858;HRun=2;HaplotypeScore=84.2892;InbreedingCoeff=-0.3826;MQ=56.76;MQ0=1;MQRankSum=1.425;QD=1.26;ReadPosRankSum=-10.253 GT:AD:DP:GQ:PL 0/1:13,0:13:21.75:22,0,199 0/0:12,0:12:15.04:0,15,186 0/1:17,0:17:2.78:3,0,271 0/1:90,0:89:99:198,0,1222 0/1:65,0:65:48.85:49,0,891 0/1:35,0:34:16.07:16,0,502 0/0:37,0:37:10.28:0,10,549 0/0:38,0:37:47.29:0,47,836 0/1:14,0:14:59.87:60,0,111 0/1:15,0:15:25.65:26,0,256 0/0:21,1:22:17.17:0,17,411 0/1:11,0:11:8.66:9,0,236 0/0:12,1:13:27.08:0,27,321 0/1:15,0:15:15.64:16,0,169 0/0:39,0:39:10.79:0,11,806 0/1:20,0:20:23.91:24,0,268 0/1:25,0:25:28.21:28,0,470 0/1:15,0:15:26.61:27,0,268 0/1:35,0:35:24.51:25,0,538 0/0:41,0:41:24.45:0,24,810 0/1:30,0:29:45.93:46,0,330 0/1:16,6:22:76.07:76,0,464 0/0:55,0:55:25.58:0,26,881 0/1:54,0:53:38.09:38,0,591 0/0:32,0:32:37.29:0,37,731 0/0:44,1:45:35.82:0,36,759 0/1:11,0:11:24.68:25,0,170 0/0:7,0:7:9.02:0,9,100 0/0:6,0:6:12.04:0,12,149 0/1:10,0:10:26.97:27,0,125 0/0:14,0:14:13.10:0,13,284 0/0:34,0:34:19.94:0,20,731 0/1:13,7:20:44.48:44,0,308 0/1:11,0:11:25.78:26,0,163 0/1:16,0:16:39.42:39,0,62 0/1:14,0:14:65.42:65,0,193 0/0:26,0:26:11.61:0,12,556 0/1:16,0:16:14.70:15,0,370 0/0:12,0:12:17.48:0,17,185 0/0:15,0:15:7.34:0,7,210 0/0:7,0:7:15.52:0,16,187 0/0:6,0:6:9.03:0,9,112 19 55623902 . GTCCCCGTCACTGTTGACGGCGGCGATGTT G 863.10 . AC=23;AF=0.274;AN=84;BaseQRankSum=3.233;DP=934;FS=701.590;HRun=0;HaplotypeScore=438.3203;InbreedingCoeff=-0.3876;MQ=57.78;MQ0=1;MQRankSum=1.342;QD=1.61;ReadPosRankSum=-10.258 GT:AD:DP:GQ:PL 0/1:14,0:14:44.50:45,0,1980 0/0:9,0:9:15.05:0,15,1331 0/0:15,0:15:6.26:0,6,3411 0/1:50,33:82:99:226,0,11372 0/1:37,20:57:45.78:46,0,9461 0/1:31,0:30:32.83:33,0,5656 0/1:30,0:30:9.61:10,0,5010 0/0:35,0:35:50.34:0,50,7067 0/1:12,0:12:59.88:60,0,1020 0/1:8,3:11:31.66:32,0,1965 0/0:17,0:17:20.21:0,20,3296 0/1:8,0:8:8.65:9,0,2447 0/0:13,0:13:30.04:0,30,2661 0/1:12,0:12:9.62:10,0,1984 0/0:38,0:38:31.83:0,32,8738 0/1:18,0:18:37.80:38,0,3288 0/1:24,0:24:57.42:57,0,4670 0/1:14,0:14:23.59:24,0,2482 0/1:32,0:32:3.40:3,0,6198 0/0:36,0:36:36.56:0,37,7793 0/1:24,0:23:33.55:34,0,3033 0/1:22,0:22:87.22:87,0,5421 0/0:43,0:43:40.49:0,40,8888 0/1:49,0:48:40.80:41,0,6353 0/0:30,0:30:43.35:0,43,6060 0/0:41,0:41:56.20:0,56,7431 0/1:12,0:12:46.42:46,0,1712 0/0:6,0:6:12.03:0,12,727 0/0:6,0:6:12.04:0,12,1252 0/1:9,0:9:26.97:27,0,1089 0/0:15,0:15:20.40:0,20,3512 0/0:32,0:32:22.96:0,23,6599 0/1:19,0:19:15.53:16,0,3394 0/1:11,0:11:28.81:29,0,2016 0/1:14,0:14:63.06:63,0,763 0/1:15,0:15:91.22:91,0,1773 0/0:24,0:24:20.66:0,21,5096 0/1:16,0:16:16.48:16,0,3948 0/0:11,0:11:1.75:3,0,1735 0/0:15,0:15:13.36:0,13,2115 0/0:7,0:7:21.07:0,21,1340 0/0:4,0:4:12.04:0,12,1486 19 55658387 . T C 913.96 . AC=3;AF=0.036;AN=84;BaseQRankSum=1.997;DP=614;Dels=0.00;FS=1.376;HRun=3;HaplotypeScore=0.8239;InbreedingCoeff=-0.0400;MQ=58.96;MQ0=0;MQRankSum=1.149;QD=12.52;ReadPosRankSum=0.715 GT:AD:DP:GQ:PL 0/0:9,0:9:24.05:0,24,276 0/0:11,0:11:24.08:0,24,296 0/0:7,1:9:21.06:0,21,253 0/0:28,0:28:72.21:0,72,870 0/0:27,0:28:63.20:0,63,791 0/0:18,0:18:42.13:0,42,532 0/0:19,0:19:57.17:0,57,691 0/0:22,0:22:54.17:0,54,701 0/0:7,0:7:21.03:0,21,235 0/0:7,0:7:21.06:0,21,255 0/0:12,0:12:33.10:0,33,406 0/0:12,0:12:27.09:0,27,358 0/0:5,0:5:9.03:0,9,111 0/0:21,0:21:60.15:0,60,710 0/1:16,24:40:99:671,0,386 0/0:20,1:21:57.17:0,57,680 0/1:10,7:17:99:144,0,294 0/0:12,0:12:36.11:0,36,432 0/0:12,0:12:30.08:0,30,344 0/1:10,6:16:99:174,0,266 0/0:22,0:22:63.14:0,63,730 0/0:18,0:18:42.10:0,42,475 0/0:26,0:26:60.19:0,60,764 0/0:9,0:9:27.06:0,27,321 0/0:23,0:23:51.16:0,51,657 0/0:15,0:15:36.10:0,36,446 0/0:6,0:6:18.05:0,18,212 0/0:7,0:7:18.06:0,18,228 0/0:11,0:11:27.08:0,27,334 0/0:10,0:10:21.06:0,21,262 0/0:6,0:6:18.05:0,18,211 0/0:16,0:16:36.09:0,36,450 0/0:16,0:16:45.11:0,45,515 0/0:12,0:12:33.10:0,33,402 0/0:12,0:12:30.08:0,30,359 0/0:12,0:12:30.09:0,30,372 0/0:12,0:12:30.09:0,30,369 0/0:11,0:11:33.07:0,33,375 0/0:16,0:16:42.13:0,42,527 0/0:13,0:13:33.09:0,33,387 0/0:8,0:8:24.08:0,24,296 0/0:7,0:7:18.05:0,18,223 19 55667647 . C A 550.64 . AC=10;AF=0.119;AN=84;BaseQRankSum=-4.814;DP=357;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.4515;InbreedingCoeff=0.0135;MQ=58.48;MQ0=0;MQRankSum=1.886;QD=8.74;ReadPosRankSum=-0.708 GT:AD:DP:GQ:PL 0/0:5,0:5:15.04:0,15,183 0/0:5,0:5:15.03:0,15,175 0/0:5,0:5:15.04:0,15,176 0/0:19,0:19:54.17:0,54,680 0/0:22,0:22:63.18:0,63,776 0/0:12,0:12:33.11:0,33,444 0/0:14,0:14:42.12:0,42,531 0/0:17,0:17:45.12:0,45,549 0/0:5,0:5:15.03:0,15,171 0/0:3,0:3:9.03:0,9,115 0/1:2,1:3:27.10:27,0,63 0/0:10,0:10:27.08:0,27,333 0/0:2,0:2:6.02:0,6,72 0/0:5,0:5:15.05:0,15,187 0/0:17,0:17:39.12:0,39,475 0/0:12,0:12:27.08:0,27,322 0/0:6,0:6:18.06:0,18,227 0/1:5,1:6:19.74:20,0,164 0/1:6,5:11:99:102,0,186 0/1:8,6:14:99:135,0,208 0/0:9,0:9:27.08:0,27,326 0/0:12,0:12:36.11:0,36,441 0/0:14,0:14:36.06:0,36,421 0/0:10,0:10:30.08:0,30,376 0/0:14,0:14:39.13:0,39,514 0/0:14,0:14:39.12:0,39,504 0/1:3,2:5:18.65:54,0,19 0/0:4,0:4:9.03:0,9,115 0/1:0,3:3:0.52:91,9,0 0/0:9,0:9:27.08:0,27,341 0/0:5,0:5:15.04:0,15,167 0/1:4,3:7:60.53:79,0,61 0/0:10,0:10:30.09:0,30,374 0/1:1,1:2:26.48:26,0,27 0/0:5,0:5:12.04:0,12,153 0/1:2,2:4:48.13:62,0,48 0/0:6,0:6:15.04:0,15,172 0/1:4,4:8:91.07:94,0,91 0/0:8,0:8:24.07:0,24,291 0/0:4,0:4:12.04:0,12,148 0/0:5,0:5:9.03:0,9,112 0/0:6,0:6:12.03:0,12,143 19 55667653 . C T 294.94 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.593;DP=370;Dels=0.00;FS=5.177;HRun=1;HaplotypeScore=0.5363;InbreedingCoeff=-0.0447;MQ=58.33;MQ0=0;MQRankSum=1.327;QD=10.92;ReadPosRankSum=2.375 GT:AD:DP:GQ:PL 0/0:5,0:5:15.05:0,15,189 0/0:4,0:4:12.04:0,12,150 0/0:7,0:7:21.05:0,21,244 0/0:18,0:18:51.16:0,51,654 0/0:20,0:20:60.19:0,60,775 0/1:6,6:12:99:201,0,182 0/0:12,0:12:33.10:0,33,415 0/1:9,6:15:99:156,0,240 0/0:7,0:7:15.05:0,15,191 0/0:3,0:3:9.03:0,9,114 0/0:4,0:4:12.04:0,12,148 0/0:12,0:12:36.11:0,36,444 0/0:1,0:1:3.01:0,3,39 0/0:6,0:6:15.05:0,15,191 0/0:17,0:17:45.13:0,45,542 0/0:11,0:11:30.08:0,30,354 0/0:7,0:7:21.06:0,21,257 0/0:6,0:6:15.05:0,15,186 0/0:12,0:12:33.10:0,33,413 0/0:15,0:15:39.11:0,39,457 0/0:7,0:7:21.07:0,21,268 0/0:14,0:14:42.13:0,42,515 0/0:18,0:18:48.15:0,48,620 0/0:9,0:9:24.08:0,24,317 0/0:13,0:14:36.12:0,36,487 0/0:16,0:16:48.15:0,48,625 0/0:5,0:5:9.02:0,9,102 0/0:4,0:4:9.03:0,9,116 0/0:3,0:3:9.03:0,9,112 0/0:9,0:9:27.09:0,27,338 0/0:3,0:3:9.03:0,9,118 0/0:9,0:9:18.05:0,18,220 0/0:10,0:10:30.07:0,30,362 0/0:2,0:2:5.99:0,6,61 0/0:6,0:6:18.03:0,18,204 0/0:5,0:5:15.04:0,15,170 0/0:6,0:6:15.05:0,15,184 0/0:9,0:9:21.07:0,21,264 0/0:9,0:9:27.08:0,27,330 0/0:6,0:6:18.05:0,18,220 0/0:5,0:5:12.03:0,12,143 0/0:7,0:7:12.04:0,12,146 19 55668481 . T G 168.79 . 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C T 100930.37 . 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C T 11982.89 . 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A G 2720.68 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.894;DP=3557;DS;Dels=0.00;FS=2.884;HRun=2;HaplotypeScore=2.4043;InbreedingCoeff=-0.0244;MQ=59.34;MQ0=0;MQRankSum=-2.810;QD=12.96;ReadPosRankSum=0.542 GT:AD:DP:GQ:PL 0/0:76,0:76:99:0,220,2607 0/0:64,0:64:99:0,187,2253 0/0:74,0:74:99:0,208,2537 0/0:161,0:161:99:0,457,5643 0/0:149,2:152:99:0,404,5297 0/0:108,0:110:99:0,295,3711 0/0:121,0:121:99:0,355,4424 0/0:102,0:102:99:0,289,3603 0/0:58,0:58:99:0,159,1936 0/0:64,0:65:99:0,184,2249 0/0:53,0:53:99:0,153,1880 0/0:47,0:47:99:0,141,1668 0/0:61,0:62:99:0,178,2184 0/0:71,0:71:99:0,211,2594 0/1:67,83:150:99:2308,0,1816 0/0:83,1:84:99:0,235,2864 0/1:41,19:60:99:475,0,1307 0/0:60,0:60:99:0,175,2150 0/0:99,0:99:99:0,286,3454 0/0:101,0:102:99:0,280,3438 0/0:103,0:103:99:0,295,3619 0/0:92,0:92:99:0,256,3085 0/0:169,0:169:99:0,475,5848 0/0:100,1:101:99:0,286,3571 0/0:105,0:106:99:0,295,3654 0/0:98,0:98:99:0,289,3519 0/0:48,0:48:99:0,129,1607 0/0:71,0:71:99:0,199,2410 0/0:63,0:63:99:0,184,2275 0/0:54,0:54:99:0,159,1965 0/0:69,0:69:99:0,193,2372 0/0:92,0:92:99:0,271,3320 0/0:98,0:98:99:0,283,3463 0/0:79,0:79:99:0,229,2790 0/0:71,0:71:99:0,208,2498 0/0:73,0:74:99:0,202,2458 0/0:82,0:82:99:0,229,2768 0/0:50,0:50:99:0,147,1789 0/0:75,0:76:99:0,220,2713 0/0:80,0:81:99:0,232,2783 0/0:51,0:51:99:0,150,1838 0/0:57,0:57:99:0,162,1979 19 55672470 . T C 703.92 . AC=19;AF=0.226;AN=84;BaseQRankSum=1.289;DP=104;Dels=0.00;FS=8.453;HRun=1;HaplotypeScore=0.1070;InbreedingCoeff=0.2059;MQ=59.09;MQ0=0;MQRankSum=-0.776;QD=18.52;ReadPosRankSum=-0.613 GT:AD:DP:GQ:PL 0/0:3,0:3:9.03:0,9,110 0/1:0,1:1:1.76:32,3,0 1/1:0,3:3:9.03:112,9,0 0/0:3,0:3:9:0,9,99 0/0:4,0:4:12.04:0,12,147 1/1:1,2:3:6.01:69,6,0 1/1:0,2:2:6.02:77,6,0 0/0:2,0:2:6.02:0,6,76 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:6.02:0,6,75 0/0:6,0:6:18.05:0,18,211 0/0:3,0:3:6.02:0,6,73 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:3.01:0,3,38 0/1:3,1:4:24.09:24,0,100 0/1:1,4:5:26.54:101,0,27 0/0:2,0:2:6.02:0,6,71 0/0:2,0:2:6.02:0,6,68 0/0:1,0:1:3.01:0,3,36 0/0:3,0:3:9.03:0,9,111 0/0:3,0:3:9.03:0,9,113 0/0:2,0:2:3.01:0,3,45 0/0:3,0:3:9.03:0,9,113 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,39 0/0:2,0:2:6.02:0,6,77 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,37 0/0:1,0:1:3.01:0,3,38 1/1:0,3:3:9.03:108,9,0 1/1:0,2:2:3.01:32,3,0 0/0:5,0:5:15.04:0,15,181 0/1:1,2:3:28.77:66,0,29 1/1:0,1:1:3.01:39,3,0 0/1:1,2:3:27.95:65,0,28 0/0:3,0:3:9.03:0,9,105 0/1:1,2:3:27.42:39,0,27 0/0:3,0:3:9.03:0,9,109 0/1:2,3:5:59.73:100,0,60 0/0:1,0:1:3.01:0,3,38 0/0:1,0:1:3.01:0,3,38 0/0:3,0:3:9.02:0,9,99 19 55673654 . T C 240.22 . AC=2;AF=0.026;AN=76;BaseQRankSum=2.919;DP=121;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.1816;InbreedingCoeff=-0.1193;MQ=58.49;MQ0=0;MQRankSum=0.246;QD=14.13;ReadPosRankSum=0.236 GT:AD:DP:GQ:PL 0/0:3,0:3:6.01:0,6,72 0/0:5,0:5:15.04:0,15,178 0/0:2,0:2:6.02:0,6,74 0/0:2,0:2:6.02:0,6,73 0/0:3,0:3:9.03:0,9,110 ./. 0/0:1,0:1:3.01:0,3,39 0/0:1,0:1:3.01:0,3,37 0/0:2,0:2:3.01:0,3,45 0/0:2,0:2:6.02:0,6,70 0/0:2,0:2:6.02:0,6,73 ./. 0/0:2,0:2:6.02:0,6,70 0/0:3,0:3:9.03:0,9,111 0/1:5,8:13:99:198,0,139 ./. 0/1:1,3:4:26.54:101,0,27 0/0:1,0:1:3.01:0,3,38 0/0:6,0:6:12.04:0,12,163 0/0:6,0:6:18.05:0,18,210 0/0:3,0:3:9.03:0,9,106 0/0:6,0:6:18.06:0,18,219 0/0:4,0:4:12.04:0,12,152 0/0:2,0:2:6.02:0,6,75 0/0:1,0:1:3.01:0,3,33 0/0:1,0:1:3:0,3,27 0/0:2,0:2:6.02:0,6,74 ./. 0/0:1,0:1:3.01:0,3,34 0/0:3,0:3:9.02:0,9,102 0/0:2,0:2:6.02:0,6,71 0/0:3,0:3:9:0,9,93 0/0:6,0:6:18.05:0,18,215 0/0:2,0:2:6.02:0,6,74 0/0:6,0:6:18.05:0,18,216 0/0:4,0:4:12.04:0,12,150 0/0:3,0:3:9.03:0,9,112 0/0:2,0:2:6.02:0,6,71 0/0:1,0:1:3.01:0,3,32 0/0:2,0:2:6.02:0,6,74 0/0:3,0:3:9.03:0,9,105 0/0:5,0:5:12.04:0,12,155 19 55693123 . T C 3456.23 . 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T C 24873.23 . AC=21;AF=0.250;AN=84;BaseQRankSum=-15.620;DP=3665;DS;Dels=0.00;FS=7.152;HRun=0;HaplotypeScore=2.2727;InbreedingCoeff=0.1746;MQ=59.22;MQ0=0;MQRankSum=12.189;QD=18.04;ReadPosRankSum=-0.821 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,120,1424 0/1:21,31:52:99:852,0,529 1/1:0,52:52:99:1569,138,0 0/0:223,0:223:99:0,596,7325 0/0:197,1:198:99:0,521,6686 0/0:148,1:149:99:0,370,5013 0/0:124,1:126:99:0,343,4286 0/0:136,0:137:99:0,376,4531 0/1:25,23:48:99:541,0,716 0/1:25,28:53:99:689,0,711 0/0:47,0:47:99:0,138,1596 0/0:51,0:51:99:0,144,1734 0/0:44,0:44:99:0,123,1447 0/0:68,0:69:99:0,196,2305 1/1:0,171:171:99:5384,472,0 0/1:25,42:67:99:1212,0,676 0/1:31,24:55:99:649,0,868 0/0:47,0:47:99:0,138,1655 0/0:121,0:121:99:0,343,4144 0/0:132,0:132:99:0,364,4373 0/0:106,0:107:99:0,277,3352 0/0:77,0:77:99:0,214,2548 0/1:102,102:204:99:2939,0,2965 0/1:57,67:124:99:1778,0,1641 0/0:160,0:160:99:0,433,5371 0/1:54,34:88:99:938,0,1506 0/0:57,0:57:99:0,171,1963 0/0:50,0:50:99:0,147,1702 0/0:53,0:53:99:0,147,1778 1/1:2,59:61:99:1896,117,0 1/1:0,52:52:99:1671,153,0 0/0:123,0:123:99:0,334,4031 0/1:34,52:86:99:1397,0,955 0/1:26,25:51:99:662,0,766 0/1:23,25:48:99:636,0,655 0/0:68,0:68:99:0,184,2232 0/1:59,53:112:99:1447,0,1645 0/0:52,0:52:99:0,156,1824 0/1:30,25:55:99:612,0,915 0/0:50,0:50:99:0,150,1793 0/0:49,0:49:99:0,147,1739 0/0:54,0:54:99:0,156,1858 19 55693469 . C T 1725.54 . 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T C 127858.94 . AC=84;AF=1.000;AN=84;BaseQRankSum=1.859;DP=3760;Dels=0.00;FS=3.984;HRun=0;HaplotypeScore=1.8838;InbreedingCoeff=-0.0000;MQ=58.61;MQ0=0;MQRankSum=0.144;QD=34.01;ReadPosRankSum=-0.323 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2132,172,0 1/1:0,62:62:99:2037,160,0 1/1:0,56:56:99:1916,150,0 1/1:0,168:169:99:5901,448,0 1/1:1,188:189:99:6769,486,0 1/1:0,133:133:99:4789,358,0 1/1:0,120:120:99:4147,307,0 1/1:0,130:130:99:4584,349,0 1/1:0,59:60:99:1952,159,0 1/1:0,59:60:99:2017,162,0 1/1:0,61:61:99:2052,163,0 1/1:0,55:55:99:1898,150,0 1/1:0,61:61:99:2185,175,0 1/1:0,69:69:99:2424,193,0 1/1:0,229:229:99:7101,563,0 1/1:0,59:59:99:2007,162,0 1/1:0,68:68:99:2384,193,0 1/1:0,46:46:99:1533,126,0 1/1:0,115:115:99:3730,304,0 1/1:0,104:104:99:3603,289,0 1/1:0,140:140:99:4391,352,0 1/1:1,76:77:99:2433,171,0 1/1:0,189:189:99:6657,503,0 1/1:0,127:127:99:4500,343,0 1/1:0,146:146:99:5002,376,0 1/1:0,116:116:99:4016,301,0 1/1:0,49:49:99:1725,138,0 1/1:0,61:61:99:1974,156,0 1/1:0,40:40:99:1375,111,0 1/1:0,71:71:99:2391,193,0 1/1:0,54:54:99:1925,156,0 1/1:0,119:120:99:3961,322,0 1/1:0,72:72:99:2229,178,0 1/1:0,69:69:99:2439,199,0 1/1:0,65:65:99:2232,178,0 1/1:0,56:56:99:1966,156,0 1/1:0,98:99:99:3176,253,0 1/1:0,63:63:99:2135,175,0 1/1:0,59:59:99:2000,162,0 1/1:0,78:78:99:2708,223,0 1/1:0,38:38:99:1312,105,0 1/1:0,61:61:99:2151,172,0 19 55743494 . G A 198.03 . AC=2;AF=0.024;AN=84;BaseQRankSum=1.736;DP=570;Dels=0.00;FS=13.796;HRun=0;HaplotypeScore=0.5132;InbreedingCoeff=-0.0264;MQ=58.31;MQ0=0;MQRankSum=0.564;QD=11.00;ReadPosRankSum=0.439 GT:AD:DP:GQ:PL 0/0:14,0:14:33.09:0,33,372 0/0:12,0:12:27.07:0,27,312 0/0:13,0:13:33.09:0,33,368 0/0:12,0:12:33.10:0,33,401 0/0:8,0:8:24.08:0,24,311 0/1:3,5:8:62.85:94,0,63 0/0:9,0:9:27.08:0,27,322 0/1:4,6:10:91.85:167,0,92 0/0:8,0:8:21.06:0,21,233 0/0:10,0:10:24.06:0,24,273 0/0:7,0:7:18.04:0,18,202 0/0:5,0:5:12.03:0,12,135 0/0:10,0:10:30.08:0,30,335 0/0:18,0:18:48.13:0,48,556 0/0:35,0:35:99:0,102,1093 0/0:12,0:12:33.06:0,33,359 0/0:8,0:8:21.03:0,21,221 0/0:8,0:8:24.07:0,24,280 0/0:19,0:19:51.12:0,51,557 0/0:35,0:36:96.25:0,96,1093 0/0:21,0:23:54.14:0,54,622 0/0:18,0:18:51.12:0,51,564 0/0:19,0:19:51.15:0,51,635 0/0:5,0:5:15.02:0,15,175 0/0:9,0:9:27.07:0,27,308 0/0:9,0:9:27.07:0,27,323 0/0:11,0:11:33.08:0,33,357 0/0:15,0:15:39.10:0,39,441 0/0:10,0:10:27.07:0,27,317 0/0:15,0:15:42.12:0,42,475 0/0:10,0:10:24.07:0,24,280 0/0:20,0:20:57.16:0,57,660 0/0:21,0:21:60.17:0,60,694 0/0:14,0:14:42.11:0,42,476 0/0:10,0:10:27.07:0,27,303 0/0:8,0:8:24.04:0,24,251 0/0:30,0:30:81.21:0,81,899 0/0:13,0:13:36.08:0,36,383 0/0:10,0:10:27.07:0,27,306 0/0:11,0:11:30.07:0,30,335 0/0:16,0:16:42.12:0,42,496 0/0:11,0:11:27.07:0,27,301 19 55751428 . A C 70.52 . AC=8;AF=0.095;AN=84;BaseQRankSum=-9.076;DP=418;Dels=0.00;FS=72.116;HRun=2;HaplotypeScore=0.3959;InbreedingCoeff=-0.1472;MQ=58.83;MQ0=0;MQRankSum=-0.130;QD=0.72;ReadPosRankSum=-4.372 GT:AD:DP:GQ:PL 0/0:7,1:8:18.04:0,18,208 0/0:7,2:9:21.05:0,21,234 0/1:2,4:6:19.67:20,0,29 0/0:9,7:16:24.07:0,24,296 0/0:12,4:16:33.04:0,33,341 0/0:8,4:12:20.98:0,21,245 0/0:6,3:9:12.04:0,12,148 0/0:2,1:3:3.01:0,3,35 0/1:1,2:3:25.53:26,0,31 0/1:2,3:5:12.66:13,0,60 0/0:6,0:6:18.06:0,18,218 0/0:6,3:9:18.05:0,18,207 0/0:6,3:9:18.02:0,18,186 0/0:3,3:6:6.02:0,6,68 0/1:26,12:38:53.82:54,0,631 0/0:9,4:13:27.07:0,27,301 0/0:7,3:10:18.04:0,18,197 0/1:8,4:12:23.30:23,0,235 0/1:7,4:11:7.72:8,0,172 0/0:9,7:16:27.07:0,27,315 0/1:10,3:13:25.18:25,0,274 0/0:5,3:8:15.04:0,15,172 0/0:7,7:14:1.04:6,0,206 0/0:5,5:10:10.57:0,11,103 0/0:4,4:9:9.02:0,9,97 0/0:3,2:5:9.01:0,9,94 0/0:8,2:10:24.05:0,24,251 0/0:6,1:7:15.04:0,15,168 0/0:3,3:6:6.02:0,6,67 0/0:1,1:2:3.01:0,3,37 0/0:7,3:10:15.04:0,15,175 0/0:15,3:18:42.01:0,42,476 0/0:9,5:14:24.05:0,24,268 0/0:4,1:5:9.02:0,9,93 0/0:6,2:8:17.26:0,17,171 0/0:7,1:8:21.05:0,21,235 0/0:8,2:10:3.37:0,3,252 0/0:7,2:9:21.06:0,21,236 0/1:7,3:10:13.50:13,0,171 0/0:7,2:9:18.05:0,18,202 0/0:5,1:7:9:0,9,94 0/0:5,3:9:12.03:0,12,129 19 55785881 . G A 394.01 . AC=4;AF=0.049;AN=82;BaseQRankSum=1.149;DP=354;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2887;InbreedingCoeff=-0.0664;MQ=59.05;MQ0=0;MQRankSum=-0.621;QD=9.85;ReadPosRankSum=1.076 GT:AD:DP:GQ:PL 0/0:10,0:10:30.07:0,30,338 0/0:6,0:6:18.05:0,18,206 0/0:10,0:10:24.06:0,24,282 0/1:9,7:16:99:193,0,253 0/0:18,0:18:51.14:0,51,607 0/0:17,0:17:45.11:0,45,500 0/0:15,0:15:45.12:0,45,512 0/0:11,0:11:33.07:0,33,376 0/0:4,0:4:12.03:0,12,132 0/0:4,0:4:9.02:0,9,90 0/1:3,3:6:83.07:92,0,83 0/0:7,0:7:21.03:0,21,225 0/0:8,0:8:24.06:0,24,272 0/0:6,0:6:18.05:0,18,206 0/0:23,0:23:60.17:0,60,684 0/0:8,0:8:24.05:0,24,258 0/0:6,0:7:15.04:0,15,174 ./. 0/0:13,0:13:36.10:0,36,416 0/0:11,0:11:27.07:0,27,324 0/0:5,0:5:15.04:0,15,164 0/0:4,0:4:9.02:0,9,102 0/1:6,5:11:99:139,0,180 0/0:8,0:8:21.04:0,21,226 0/0:15,0:15:42.10:0,42,479 0/0:12,0:12:33.07:0,33,362 0/0:4,0:4:12.03:0,12,130 0/0:7,0:7:18.03:0,18,183 0/0:3,0:3:9.01:0,9,89 0/0:8,0:8:24.06:0,24,259 0/0:6,0:6:18.05:0,18,202 0/0:13,0:13:30.08:0,30,338 0/0:5,0:5:15.04:0,15,168 0/0:5,0:5:15:0,15,146 0/0:4,0:4:9.02:0,9,102 0/0:9,0:9:27.08:0,27,309 0/0:9,0:9:24.07:0,24,267 0/0:2,0:2:6.02:0,6,69 0/1:4,3:7:55.05:55,0,123 0/0:7,0:7:15.05:0,15,185 0/0:4,0:4:12.02:0,12,124 0/0:6,0:6:15.04:0,15,175 19 55824247 . A G 48.96 . AC=12;AF=0.146;AN=82;BaseQRankSum=-7.096;DP=395;Dels=0.00;FS=14.925;HRun=3;HaplotypeScore=0.4065;InbreedingCoeff=-0.1095;MQ=57.87;MQ0=0;MQRankSum=-0.342;QD=0.47;ReadPosRankSum=-1.335 GT:AD:DP:GQ:PL 0/1:3,6:9:20.60:21,0,62 0/0:4,2:6:9.03:0,9,111 0/0:2,5:7:6.02:0,6,69 0/0:12,5:17:2.38:0,2,258 0/0:4,5:9:12.03:0,12,137 0/0:6,7:13:12.04:0,12,155 0/0:5,0:5:9:0,9,85 0/0:5,5:10:12.03:0,12,133 0/1:0,4:4:1.76:26,3,0 0/0:5,2:7:12.03:0,12,132 0/0:7,2:9:15.04:0,15,165 0/0:7,1:8:18.03:0,18,208 0/1:4,1:5:17.66:18,0,60 0/1:5,4:9:12.66:13,0,65 0/0:19,7:26:42.12:0,42,489 0/0:9,1:10:21.06:0,21,245 0/1:3,3:7:9.66:10,0,83 0/0:7,2:9:12.01:0,12,127 0/0:7,6:13:18.05:0,18,209 0/0:15,9:24:1.89:3,0,180 0/1:5,4:10:18.39:18,0,128 0/0:8,5:13:12.03:0,12,134 0/1:7,9:16:7.64:8,0,157 0/0:6,3:9:15.01:0,15,146 0/0:6,3:9:18.05:0,18,209 0/0:7,3:10:15.04:0,15,175 0/1:2,2:4:14.67:15,0,62 0/0:6,1:7:9.02:0,9,101 0/0:4,1:5:6.01:0,6,63 0/0:7,2:9:18.04:0,18,192 0/0:3,1:4:9.03:0,9,110 0/0:9,5:15:24.07:0,24,280 0/0:8,4:12:21.06:0,21,246 0/0:4,1:5:12.03:0,12,143 0/1:9,5:14:6.61:7,0,187 0/0:7,0:7:21.04:0,21,222 0/1:6,3:10:15.38:15,0,156 ./. 0/0:5,4:9:12:0,12,122 0/1:5,3:8:16.61:17,0,96 0/0:2,0:2:5.99:0,6,50 0/1:5,2:8:15.38:15,0,158 19 55824298 . G A 960.56 . AC=2;AF=0.024;AN=84;BaseQRankSum=-3.815;DP=745;Dels=0.00;FS=1.450;HRun=1;HaplotypeScore=0.8696;InbreedingCoeff=-0.0246;MQ=58.29;MQ0=0;MQRankSum=1.576;QD=12.98;ReadPosRankSum=2.200 GT:AD:DP:GQ:PL 0/0:13,0:13:33.09:0,33,414 0/0:17,0:17:45.13:0,45,550 0/0:14,0:14:42.13:0,42,535 0/0:24,0:24:72.21:0,72,928 0/0:20,0:20:60.18:0,60,783 0/0:22,0:22:63.19:0,63,819 0/0:14,0:14:42.13:0,42,558 0/0:16,0:17:48.14:0,48,623 0/0:10,0:10:30.08:0,30,359 0/0:14,0:14:39.12:0,39,492 0/0:17,0:17:48.15:0,48,597 0/0:11,0:11:30.09:0,30,375 0/0:14,0:14:42.13:0,42,513 0/0:17,0:17:48.14:0,48,597 0/1:29,31:60:99:848,0,793 0/1:8,6:14:99:175,0,255 0/0:13,0:13:36.11:0,36,441 0/0:9,0:9:24.08:0,24,304 0/0:22,0:22:57.17:0,57,702 0/0:26,0:26:63.17:0,63,782 0/0:28,0:28:75.24:0,75,942 0/0:23,0:23:69.21:0,69,852 0/0:22,0:22:60.19:0,60,806 0/0:17,0:17:42.14:0,42,559 0/0:22,0:22:66.21:0,66,870 0/0:12,0:12:33.08:0,33,409 0/0:8,0:8:24.04:0,24,283 0/0:13,0:13:36.12:0,36,465 0/0:11,0:11:27.08:0,27,342 0/0:10,0:10:30.10:0,30,385 0/0:13,0:13:39.11:0,39,485 0/0:30,0:30:72.23:0,72,933 0/0:24,0:24:60.19:0,60,773 0/0:12,0:12:30.09:0,30,374 0/0:23,0:23:63.18:0,63,781 0/0:16,0:16:45.14:0,45,575 0/0:19,0:19:51.16:0,51,644 0/0:10,0:10:30.09:0,30,366 0/0:21,0:21:63.20:0,63,787 0/0:14,0:14:39.11:0,39,478 0/0:10,0:10:24.07:0,24,303 0/0:19,0:19:57.18:0,57,725 19 55824332 . T G 17017.24 . AC=45;AF=0.536;AN=84;BaseQRankSum=-4.107;DP=1016;Dels=0.00;FS=15.833;HRun=0;HaplotypeScore=0.6415;InbreedingCoeff=0.0900;MQ=58.43;MQ0=1;MQRankSum=2.398;QD=20.43;ReadPosRankSum=0.017 GT:AD:DP:GQ:PL 0/1:16,6:22:99:117,0,434 0/0:17,0:17:48.11:0,48,557 0/0:21,0:21:54.16:0,54,665 1/1:0,42:42:99:1359,114,0 1/1:0,30:30:87.26:1049,87,0 1/1:0,27:27:75.23:927,75,0 1/1:0,18:18:42.13:539,42,0 0/1:12,18:30:99:459,0,348 0/0:15,0:15:45.13:0,45,531 0/1:6,10:16:99:268,0,131 0/1:15,16:31:99:407,0,385 1/1:0,18:18:48.11:548,48,0 1/1:0,20:20:51.11:584,51,0 1/1:0,21:21:60.16:691,60,0 1/1:3,73:76:99:2110,133,0 0/1:8,8:16:99:223,0,243 0/1:11,11:22:99:283,0,308 0/0:9,0:9:27.08:0,27,315 0/0:34,0:34:90.24:0,90,1072 0/0:30,0:30:84.22:0,84,992 0/1:14,19:33:99:534,0,347 0/1:15,16:31:99:435,0,351 1/1:0,33:33:84.23:1016,84,0 1/1:0,24:24:63.16:768,63,0 0/1:21,14:35:99:377,0,566 0/1:14,9:23:99:251,0,322 0/0:9,0:9:21.07:0,21,270 0/0:20,0:20:54.16:0,54,656 0/0:14,0:14:36.11:0,36,442 0/0:14,0:14:33.10:0,33,416 0/1:12,9:21:99:233,0,280 0/1:15,15:30:99:378,0,411 0/1:18,16:34:99:382,0,444 1/1:0,13:13:36.10:416,36,0 0/1:13,13:26:99:331,0,319 0/1:6,12:18:99:347,0,162 0/1:17,9:26:99:194,0,491 0/1:10,8:18:99:153,0,257 1/1:0,22:22:66.17:744,66,0 0/1:14,9:23:99:258,0,388 1/1:0,14:14:39.11:456,39,0 0/1:12,8:20:99:182,0,352 19 55879672 . C T 56.78 . AC=2;AF=0.024;AN=84;BaseQRankSum=-2.152;DP=253;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.2778;InbreedingCoeff=0.2718;MQ=59.34;MQ0=0;MQRankSum=-0.486;QD=11.36;ReadPosRankSum=-1.067 GT:AD:DP:GQ:PL 0/0:8,0:8:21.06:0,21,249 0/0:5,0:5:15.04:0,15,181 0/0:3,0:3:9.03:0,9,110 0/0:12,0:12:33.11:0,33,436 0/0:9,0:9:24.06:0,24,300 0/0:6,0:6:15.04:0,15,188 0/0:10,0:10:30.10:0,30,399 0/0:8,0:8:24.08:0,24,314 0/0:7,0:7:21.07:0,21,270 0/0:5,0:5:15.05:0,15,188 0/0:3,0:3:9.02:0,9,97 0/0:3,0:3:9.03:0,9,108 0/0:2,0:2:6.02:0,6,70 0/0:7,0:7:18.06:0,18,228 0/0:22,0:22:57.17:0,57,714 0/0:12,0:12:33.08:0,33,403 0/0:4,0:4:9.02:0,9,98 0/0:6,0:6:18.06:0,18,230 0/0:4,0:4:12.04:0,12,144 0/0:9,0:9:24.07:0,24,288 0/0:6,0:6:18.03:0,18,206 0/0:9,0:9:27.07:0,27,320 0/0:7,0:7:21.06:0,21,265 0/0:3,0:3:9.03:0,9,115 0/0:9,0:9:27.09:0,27,359 0/0:4,0:4:12.04:0,12,163 0/0:5,0:5:15.04:0,15,162 0/0:5,0:5:15.04:0,15,179 0/0:3,0:3:9.03:0,9,114 0/0:6,0:6:15.03:0,15,182 0/0:1,0:1:3.01:0,3,36 0/0:8,0:8:18.06:0,18,223 0/0:5,0:5:15.05:0,15,185 0/0:8,0:8:21.04:0,21,254 0/0:4,0:4:12.04:0,12,154 0/0:2,0:2:6.02:0,6,77 0/0:4,0:4:12.04:0,12,151 0/0:9,0:9:27.08:0,27,324 0/0:3,0:3:9.02:0,9,106 0/1:0,2:2:0.97:63,6,0 0/0:2,0:2:6.02:0,6,77 0/1:1,2:3:28.77:61,0,29 19 55879872 . C T 7525.06 . AC=26;AF=0.310;AN=84;BaseQRankSum=1.420;DP=815;Dels=0.00;FS=15.880;HRun=0;HaplotypeScore=0.3278;InbreedingCoeff=0.1194;MQ=58.91;MQ0=0;MQRankSum=-0.235;QD=17.54;ReadPosRankSum=-0.455 GT:AD:DP:GQ:PL 0/1:13,11:24:99:334,0,337 0/1:5,7:12:99:177,0,120 1/1:0,17:17:51.16:631,51,0 0/0:42,0:42:99:0,99,1340 0/0:40,0:40:99:0,108,1417 0/0:18,0:18:54.17:0,54,706 0/0:16,0:16:48.13:0,48,611 0/0:23,0:23:51.16:0,51,682 0/0:18,0:18:48.12:0,48,558 0/0:4,0:4:12.04:0,12,150 0/0:12,0:12:30.05:0,30,329 0/1:4,10:14:99:251,0,113 0/1:10,6:16:99:189,0,225 0/0:26,0:26:75.20:0,75,877 0/1:27,25:52:99:564,0,702 0/1:12,7:20:99:207,0,304 0/0:14,0:14:42.12:0,42,478 0/0:8,0:8:24.07:0,24,288 0/1:10,16:26:99:375,0,245 0/1:11,14:25:99:452,0,252 0/1:19,14:33:99:365,0,488 0/0:23,0:23:60.16:0,60,698 0/0:38,0:38:90.29:0,90,1200 1/1:0,15:15:39.13:522,39,0 0/1:12,12:24:99:304,0,355 1/1:0,15:15:39.13:509,39,0 0/0:8,0:8:21.06:0,21,258 0/1:9,6:15:99:176,0,270 0/0:12,0:12:30.08:0,30,371 0/0:18,0:18:45.14:0,45,558 0/1:1,7:8:6.52:238,0,7 1/1:1,27:28:39.71:827,40,0 0/0:14,0:14:33.09:0,33,393 0/0:15,0:15:42.10:0,42,490 0/0:14,0:14:36.09:0,36,423 0/0:12,0:12:33.07:0,33,359 0/1:16,7:23:99:144,0,384 0/1:3,6:9:86.32:163,0,86 1/1:0,13:13:36.10:434,36,0 0/1:8,10:18:99:284,0,211 0/0:11,0:11:27.09:0,27,355 0/1:9,13:22:99:378,0,270 19 55889451 . G A 3690.87 . 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A G 58.07 . 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C T 825.99 . 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C T 261.05 . 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A G 19759.65 . AC=7;AF=0.083;AN=84;BaseQRankSum=20.318;DP=7426;DS;Dels=0.00;FS=13.658;HRun=0;HaplotypeScore=3.4518;InbreedingCoeff=-0.0909;MQ=59.55;MQ0=0;MQRankSum=0.096;QD=14.71;ReadPosRankSum=2.605 GT:AD:DP:GQ:PL 0/0:144,0:144:99:0,430,5182 0/0:147,0:147:99:0,430,5186 0/0:147,0:147:99:0,430,5184 0/1:123,112:235:99:3573,0,3698 0/0:236,1:237:99:0,639,8387 0/0:241,0:241:99:0,698,8869 0/0:209,0:209:99:0,599,7590 0/0:239,0:239:99:0,698,8662 0/0:155,0:155:99:0,445,5421 0/0:123,0:123:99:0,355,4251 0/0:141,1:142:99:0,371,4911 0/0:130,0:130:99:0,373,4558 0/0:112,0:112:99:0,325,3963 0/1:77,71:148:99:2156,0,2217 0/1:125,117:244:99:3562,0,3626 0/0:139,0:139:99:0,406,4872 0/1:84,79:163:99:2381,0,2540 0/0:160,0:160:99:0,454,5539 0/0:249,0:250:99:0,722,8918 0/0:249,0:249:99:0,716,8780 0/0:245,0:245:99:0,701,8669 0/0:184,0:185:99:0,533,6376 0/1:125,121:246:99:4123,0,3775 0/0:209,0:209:99:0,602,7520 0/0:223,0:223:99:0,650,8123 0/0:211,0:211:99:0,605,7568 0/0:115,0:115:99:0,343,4123 0/0:129,0:129:99:0,376,4561 0/0:128,0:128:99:0,379,4553 0/0:118,0:119:99:0,337,4127 0/0:161,0:161:99:0,472,5760 0/0:235,0:235:99:0,680,8366 0/1:96,66:162:99:1772,0,2907 0/0:148,0:149:99:0,427,5192 0/0:137,0:137:99:0,397,4873 0/0:174,0:174:99:0,493,6016 0/0:247,0:248:99:0,716,8763 0/0:143,0:143:99:0,415,5036 0/0:156,0:156:99:0,463,5605 0/0:150,0:150:99:0,433,5286 0/1:73,72:145:99:2194,0,2132 0/0:142,0:142:99:0,421,5112 19 56373462 . G A 6821.88 . 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G A 8481.87 . 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T C 64709.89 . 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C A 1495.75 . 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A G 58056.05 . 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C G 804.48 . 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T TG 452.93 . 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A G 136.37 . 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C T 86818.09 . 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G C 52372.67 . 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G A 29542.22 . 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C T 151059.17 . 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G A 7292.58 . AC=8;AF=0.095;AN=84;BaseQRankSum=-12.849;DP=3095;Dels=0.00;FS=3.687;HRun=2;HaplotypeScore=1.9158;InbreedingCoeff=-0.1053;MQ=59.32;MQ0=0;MQRankSum=0.935;QD=12.84;ReadPosRankSum=0.260 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,141,1723 0/0:59,0:59:99:0,172,2110 0/0:59,0:59:99:0,172,2134 0/1:76,56:132:99:1539,0,2507 0/1:53,64:117:99:1884,0,1690 0/0:98,0:98:99:0,274,3673 0/0:90,0:90:99:0,259,3407 0/0:99,0:99:99:0,280,3676 0/0:46,0:47:99:0,129,1596 0/1:25,18:43:99:497,0,745 0/0:51,0:51:99:0,150,1864 0/1:40,15:55:99:342,0,1251 0/1:21,20:41:99:529,0,664 0/0:59,0:59:99:0,169,2117 0/0:174,0:174:99:0,457,5727 0/0:65,0:65:99:0,196,2383 0/0:56,0:56:99:0,156,1929 0/0:50,0:50:99:0,135,1689 0/0:96,0:96:99:0,265,3256 0/0:98,0:98:99:0,274,3405 0/0:117,0:117:99:0,325,4058 0/0:66,1:67:99:0,150,2249 0/0:117,0:117:99:0,340,4576 0/0:78,0:78:99:0,217,2900 0/0:81,0:81:99:0,220,2947 0/0:82,0:82:99:0,232,3066 0/0:45,0:45:99:0,126,1561 0/0:61,0:61:99:0,169,2100 0/0:61,0:61:99:0,165,2047 0/1:31,32:63:99:904,0,878 0/1:32,20:52:99:574,0,977 0/0:79,0:79:99:0,220,2723 0/1:30,35:65:99:1022,0,893 0/0:61,0:61:99:0,178,2181 0/0:61,1:62:99:0,143,2148 0/0:64,0:64:99:0,187,2286 0/0:95,0:96:99:0,268,3289 0/0:55,0:55:99:0,156,1946 0/0:70,0:70:99:0,196,2435 0/0:54,0:54:99:0,150,1867 0/0:55,0:56:99:0,159,1944 0/0:70,0:70:99:0,199,2463 19 59060542 . C CA 21.63 . AC=3;AF=0.036;AN=84;BaseQRankSum=6.562;DP=2314;FS=151.647;HRun=1;HaplotypeScore=243.5971;InbreedingCoeff=-0.0687;MQ=55.79;MQ0=0;MQRankSum=-1.632;QD=0.10;ReadPosRankSum=-4.132 GT:AD:DP:GQ:PL 0/0:38,0:38:36.19:0,36,659 0/0:33,1:34:26.21:0,26,580 0/0:31,0:31:38.85:0,39,458 0/1:122,1:123:34.78:35,0,1014 0/0:129,2:131:3.36:0,3,835 0/0:117,3:120:62.14:0,62,1335 0/0:95,0:95:25.67:0,26,945 0/0:79,2:81:53.19:0,53,935 0/0:30,0:30:6.51:0,7,396 0/0:31,0:31:7.75:0,8,248 0/0:27,1:28:41.23:0,41,589 0/0:35,0:35:44.42:0,44,511 0/0:27,1:28:30.09:0,30,381 0/0:44,0:44:16.28:0,16,533 0/0:88,2:90:40.16:0,40,1108 0/0:40,2:42:40.24:0,40,630 0/0:20,0:20:0.30:0,0,204 0/0:41,0:41:5.23:0,5,606 0/0:48,1:49:18.88:0,19,614 0/0:77,1:78:45.38:0,45,912 0/1:58,0:58:52.19:52,0,686 0/0:46,0:46:37.24:0,37,743 0/0:146,1:147:4.55:0,5,1147 0/0:78,0:77:48.41:0,48,999 0/0:102,0:102:86.38:0,86,1175 0/0:80,0:80:72.15:0,72,830 0/0:30,0:30:1.24:5,0,265 0/0:39,0:39:35.95:0,36,630 0/0:31,2:33:37.63:0,38,419 0/0:33,0:33:21.17:0,21,503 0/0:43,0:43:51.15:0,51,620 0/0:61,0:61:87.25:0,87,1068 0/0:54,0:54:57.14:0,57,703 0/1:43,0:43:15.73:16,0,424 0/0:34,1:35:32.92:0,33,390 0/0:35,0:35:54.17:0,54,687 0/0:42,2:44:33.24:0,33,718 0/0:42,0:42:45.13:0,45,556 0/0:34,0:34:39.09:0,39,469 0/0:40,0:40:22.13:0,22,546 0/0:31,0:31:44.87:0,45,538 0/0:37,0:37:39.12:0,39,493 19 59060544 . G A 29.66 . AC=3;AF=0.036;AN=84;BaseQRankSum=-10.757;DP=1809;Dels=0.00;FS=87.545;HRun=1;HaplotypeScore=1.4661;InbreedingCoeff=-0.0812;MQ=56.69;MQ0=0;MQRankSum=0.070;QD=0.15;ReadPosRankSum=-1.849 GT:AD:DP:GQ:PL 0/0:22,8:30:25.62:0,26,621 0/0:19,7:26:54.17:0,54,661 0/0:18,8:26:39.08:0,39,450 0/0:48,39:87:77.56:0,78,1249 0/0:41,40:82:35.86:0,36,1076 0/0:71,26:99:59.21:0,59,1320 0/1:48,29:77:35.89:36,0,863 0/0:44,17:62:28.25:0,28,1030 0/0:15,11:26:0.34:11,0,428 0/0:13,9:22:2.28:2,0,230 0/0:19,7:27:28.43:0,28,541 0/0:20,8:28:42.11:0,42,494 0/0:15,6:22:30.09:0,30,366 0/0:20,15:36:9:0,9,471 0/0:44,26:71:55.26:0,55,1267 0/0:28,11:39:37.53:0,38,704 0/1:9,4:13:11.44:11,0,192 0/0:20,12:32:0.52:9,0,521 0/0:30,9:40:44.51:0,45,751 0/0:46,21:67:18.39:0,18,959 0/0:32,12:45:4.82:0,5,773 0/0:24,14:38:10.04:0,10,652 0/1:54,50:106:48.75:49,0,1358 0/0:43,19:62:87.24:0,87,1080 0/0:56,29:85:75.59:0,76,1170 0/0:43,21:65:84.22:0,84,1038 0/0:10,5:15:27.06:0,27,298 0/0:26,6:33:23.56:0,24,579 0/0:12,10:25:30.07:0,30,351 0/0:16,10:26:16.46:0,16,471 0/0:24,8:32:48.14:0,48,591 0/0:40,12:52:78.22:0,78,931 0/0:28,8:37:57.18:0,57,696 0/0:17,13:30:0.59:0,1,330 0/0:20,11:32:30.05:0,30,334 0/0:24,10:34:57.14:0,57,682 0/0:27,8:35:72.21:0,72,866 0/0:19,9:28:45.14:0,45,553 0/0:21,9:30:45.14:0,45,551 0/0:21,11:32:26.73:0,27,645 0/0:18,8:26:39.11:0,39,467 0/0:19,10:29:48.14:0,48,584