4.0.0 org.mycompany.app external-example jar 1.0-SNAPSHOT External Example 3.3-SNAPSHOT ../.. UTF-8 UTF-8 yyyy/MM/dd HH:mm:ss true ${gatk.committests.skipped} ${gatk.committests.skipped} package gatk.public.repo.local GATK Public Local Repository file:${gatk.basedir}/public/repo org.broadinstitute.gatk gatk-tools-public ${gatk.version} org.broadinstitute.gatk gatk-tools-public ${gatk.version} test-jar test org.testng testng 6.8 test org.apache.maven.plugins maven-dependency-plugin 2.8 unpack process-resources unpack org.broadinstitute.gatk gatk-engine ${gatk.version} example-resources tar.bz2 ${project.build.outputDirectory} org.apache.maven.plugins maven-javadoc-plugin 2.9.1 extract-resource-bundle javadoc prepare-package org.broadinstitute.gatk.utils.help.ResourceBundleExtractorDoclet ${project.build.outputDirectory} org.broadinstitute.gatk gatk-tools-public ${gatk.version} 2g false true -build-timestamp "${maven.build.timestamp}" -absolute-version "${project.version}" -out ${project.build.outputDirectory}/GATKText.properties org.apache.maven.plugins maven-shade-plugin 2.1 ${gatk.shade.phase} shade true commons-logging:commons-logging ** samtools:htsjdk ** org.broadinstitute.gatk:gsalib:tar.gz:* org.broadinstitute.gatk:*:tar.bz2:example-resources org.broadinstitute.gatk.engine.CommandLineGATK GATKText.properties org.apache.maven.plugins maven-surefire-plugin 2.16 true false ${java.io.tmpdir} default-test none unit-tests test ${gatk.unittests.skipped} **/*UnitTest.class org.apache.maven.plugins maven-failsafe-plugin 2.16 true false ${java.io.tmpdir} integration-tests integration-test verify ${gatk.integrationtests.skipped} **/*IntegrationTest.class packagetests-enabled gatk.packagetests.enabled true none