depristo
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8ac40e8e2d
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Updated version of the recalibration tool
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1060 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-19 17:45:47 +00:00 |
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depristo
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1fb241a8b8
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Now supports resume and dry runningRecalQual.py
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@996 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-11 23:31:59 +00:00 |
hanna
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5440dd13df
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Preparation for point release of read calibrator: no artificial heap size limit, no duplicate dbsnp records.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@986 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-11 18:39:33 +00:00 |
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hanna
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e77dfe9983
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Allow script to be easily modified to support different platforms.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@955 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-09 16:06:57 +00:00 |
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hanna
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5fa3f7ed3a
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Added absolute path bug fix for Mark.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@949 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-09 02:25:17 +00:00 |
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hanna
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127c321d0a
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Cut over to 1kG version of fasta / reference. Updated doc with latest version of tool summary.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@940 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-08 21:11:44 +00:00 |
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hanna
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596773e6c6
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Cleanup.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@931 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-07 20:25:08 +00:00 |
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hanna
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e6aa058ec4
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Tighten up error handling a bit.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@920 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-06 03:40:50 +00:00 |
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hanna
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050d55cdb0
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Basic graph support for testing.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@916 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-05 21:04:01 +00:00 |
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hanna
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2035d7dfd3
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Revert some debug code in RecalQual.py. Make LogisticRegression easier to Ctrl-C out of.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@904 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-05 01:53:48 +00:00 |
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hanna
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61ae00c7bf
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Lots of cleanup.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@903 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-05 01:26:10 +00:00 |
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hanna
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9689bb3331
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Very early draft of script integrating the covariant counting / logistic regression. Deleted some unused code and spurious debug info.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@902 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-04 22:52:11 +00:00 |