gatk-3.8

Author	SHA1	Message	Date
corin	dfcd45181a	Some minor tweaks to the tearsheet generator that incorperate the gsalib more universally and create a more accurate output git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5021 348d0f76-0448-11de-a6fe-93d51630548a	2011-01-19 20:27:02 +00:00
corin	6b5474a00a	This updates the script to produce a more tearsheet-like output for sample set statistics. Formatting will be updated for aesthetic improvements. There are also several database options that currently pull out misleading information because of changes in sequencing methodology that will be updated to show correct information. Eventually, plot formatting will be updated as well and additional informative plots will be added. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4988 348d0f76-0448-11de-a6fe-93d51630548a	2011-01-13 15:59:06 +00:00
kiran	1d68b28bbd	Takes a list of BAMs, looks up the read group information in the sequencing platform's SQUID database, and computes the tearsheet stats. Also takes the VariantEval output (R format) and outputs the variant stats and some plots for the tearsheet. This script requires the gsalib library to be in the R library path (add the line '.libPaths('/path/to/Sting/R/')' to your ~/.Rprofile). git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4584 348d0f76-0448-11de-a6fe-93d51630548a	2010-10-27 19:06:22 +00:00