f967cae1aa
tiny comment change
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3708 348d0f76-0448-11de-a6fe-93d51630548a
2010-07-01 22:04:25 +00:00
3093a20a55
fixing VCF header format and info fields so that they propery emit the unbounded count value correctly for vcf4 or vcf3. Eric we should update the vcf4 spec page to indicate format fields are allowed to use the unbounded count as well (if this is true).
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3707 348d0f76-0448-11de-a6fe-93d51630548a
2010-07-01 22:02:16 +00:00
3ca2b7374b
Fixes to better deal with the "Type" and "Number" field in the INFO and FORMAT header lines in VCF4.0. We now record these fields and provide appropriate conversions. This is the first version that passes fully the VCF validator.
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Also, moved the flag indicating VCF4.0 to the VCFWriter constructor.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3669 348d0f76-0448-11de-a6fe-93d51630548a
2010-06-29 16:43:00 +00:00
d3848745ab
moving VCF 3.3 back into the GATK so Guillermo can make changes for VCF 4 output
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3639 348d0f76-0448-11de-a6fe-93d51630548a
2010-06-25 18:20:06 +00:00
aaron
delangel