Commit Graph

4 Commits (f879daa7d05d237dad219ba47a979cf923d0b6b2)

Author SHA1 Message Date
Mauricio Carneiro d379c3763a DNA Sequence to BitSet and vice-versa conversion tools
* Turns DNA sequences (for context covariates) into bit sets for maximum compression
  * Allows variable context size representation guaranteeing uniqueness.
  * Works with long precision, so it is limited to a context size of 31 bases (can be extended with BigNumber precision if necessary).
  * Unit Tests added
2012-02-29 19:25:20 -05:00
Mauricio Carneiro 75783af6fc int <-> BitSet conversion utils for MathUtils
* added unit tests.
2012-02-21 14:10:36 -05:00
Mauricio Carneiro cd68cc239b Added knuth-shuffle (KS) and randomSubset using KS to MathUtils
* Knuth-shuffle is a simple, yet effective array permutator (hope this is good english).
         * added a simple randomSubset that returns a random subset without repeats of any given array with the same probability for every permutation.
         * added unit tests to both functions
2012-01-03 09:29:46 -05:00
David Roazen 3c9497788e Reorganized the codebase beneath top-level public and private directories,
removing the playground and oneoffprojects directories in the process. Updated
build.xml accordingly.
2011-06-28 06:55:19 -04:00