weisburd
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04e14ef85a
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Refactored so it could be used for knownGene and CCDS as well as refGene
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3373 348d0f76-0448-11de-a6fe-93d51630548a
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2010-05-18 02:45:11 +00:00 |
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weisburd
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f120a00433
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Fixed bug so that the strand, alternate, and reference columns are now moved correctly
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3342 348d0f76-0448-11de-a6fe-93d51630548a
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2010-05-10 17:59:39 +00:00 |
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weisburd
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a462b5e1e7
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Changed a default path
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3291 348d0f76-0448-11de-a6fe-93d51630548a
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2010-05-03 17:07:21 +00:00 |
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weisburd
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28f746b76a
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Added option to generate UCSC or NCBI sequence
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3283 348d0f76-0448-11de-a6fe-93d51630548a
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2010-04-30 17:26:00 +00:00 |
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weisburd
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c214056d88
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Script for concatenating results of GenerateTranscriptToInfo.py into one big file
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3279 348d0f76-0448-11de-a6fe-93d51630548a
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2010-04-30 15:47:08 +00:00 |
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weisburd
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0069cb426d
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Script for spawning LSF jobs that run the TranscriptToInfo.java walker on each of the 50 contigs.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3277 348d0f76-0448-11de-a6fe-93d51630548a
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2010-04-30 15:27:52 +00:00 |
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weisburd
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ba7fe7c4e1
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Renamed
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3276 348d0f76-0448-11de-a6fe-93d51630548a
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2010-04-30 15:25:07 +00:00 |
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weisburd
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4937295a0b
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Renamed
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3275 348d0f76-0448-11de-a6fe-93d51630548a
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2010-04-30 15:24:56 +00:00 |
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weisburd
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c7b4f78316
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Added -m arg
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3233 348d0f76-0448-11de-a6fe-93d51630548a
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2010-04-21 22:38:47 +00:00 |
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weisburd
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04c22a6640
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Added handling of UCSC and NCBI reference sequences
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3165 348d0f76-0448-11de-a6fe-93d51630548a
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2010-04-14 14:40:31 +00:00 |
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weisburd
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2183f10a1d
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Script for validating and converting text files into the tabular format required for GenomicAnnotator -B inputs
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3156 348d0f76-0448-11de-a6fe-93d51630548a
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2010-04-13 13:35:10 +00:00 |