asivache
|
8ea8a74fbf
|
fixed bug in calculation of alignment start offset for negative offsets; toString() added
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@170 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-24 18:05:28 +00:00 |
|
asivache
|
9aa1ccd9b7
|
fixed some bugs in calling the optimal path; parameters adjusted (?)
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@169 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-24 17:27:51 +00:00 |
kiran
|
88d94d407a
|
Fixed a bug in the parsing of the second end of the pair.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@168 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-24 14:34:37 +00:00 |
|
asivache
|
786a7845dd
|
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@167 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-24 14:06:44 +00:00 |
|
asivache
|
3d1e0bf079
|
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@166 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-24 14:06:24 +00:00 |
aaron
|
a3b8830855
|
need more access, found out in junit testing
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@165 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-24 13:22:09 +00:00 |
|
asivache
|
908065125f
|
computes Smith-Waterman pairwise alignment
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@164 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-24 05:36:37 +00:00 |
andrewk
|
9dee9ab51c
|
Added Hapmap data track (using rodGFF class for GFF file format) to toolkit as a command line option, Hapmap metrics to AlleleFrequencyMetricsWalker, and a python Geli2GFF file converter.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@163 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-24 03:58:03 +00:00 |
hanna
|
f7363cf935
|
Support for loading from either a jar or a class directory. Fixes troubles with IntelliJ debugging.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@162 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-24 03:56:49 +00:00 |
|
hanna
|
63cd1fe201
|
Push core / playground lower into the tree.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@160 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-23 23:19:54 +00:00 |