gatk-3.8

Author	SHA1	Message	Date
Ryan Poplin	7c4ce6d969	Added GATKDocs for the VQSR walkers.	2011-08-18 14:00:39 -04:00
Ryan Poplin	bb79d3edae	Added GATKDocs for the BQSR walkers.	2011-08-18 10:57:48 -04:00
Mark DePristo	9992c373be	Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.	2011-07-17 20:29:58 -04:00
Ryan Poplin	e8ed6b7f0f	Adding more comments to main VQSR walker. Fixing copyright lines. Bug fix for default paths to now point to public/R/ instead of R/ Bug fix in VQSR for the path to the R scripts not ending in a slash.	2011-07-06 10:01:14 -04:00
David Roazen	3c9497788e	Reorganized the codebase beneath top-level public and private directories, removing the playground and oneoffprojects directories in the process. Updated build.xml accordingly.	2011-06-28 06:55:19 -04:00