gatk-3.8

Author	SHA1	Message	Date
Matt Hanna	41d70abe4e	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
Matt Hanna	f50145b872	Reinitialize random seed in the bwa bindings from the fixed seed stored in the BWA support files every time the support files are loaded.	2011-07-22 13:41:53 -04:00
Christopher Hartl	92c7cfa1c8	BWA bindings and tests moved to public (was required for ValidationAmplicons) Integration tests for ValidationAmplicons. New argument to disable BWA, lowercase letters only for repetitiveness instead.	2011-07-19 20:11:31 -04:00