Khalid Shakir
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b090751f62
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Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.
Updates to HybridSelectionPipeline:
- Added annotations back via snpEff
- Minor updates to VQSR paths and lowered memory
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2011-09-27 14:33:57 -04:00 |
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Khalid Shakir
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1f8fc4a041
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Added edu.mit.broad.picard to Queue packaged jar.
Added hack to workaround EDU.oswego namespace and staging on mac case-insensitive filesystems.
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2011-07-23 14:40:29 -04:00 |
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Khalid Shakir
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b6bc64a0c8
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Cleanup of the utils.broad package.
Using Picard IoUtils on sample names.
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2011-07-01 20:47:03 -04:00 |
David Roazen
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3c9497788e
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Reorganized the codebase beneath top-level public and private directories,
removing the playground and oneoffprojects directories in the process. Updated
build.xml accordingly.
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2011-06-28 06:55:19 -04:00 |