ebanks
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dd6d61c031
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Adding integration test to cover the case of a read that only covers an insertion (i.e. no M in the CIGAR string).
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5923 348d0f76-0448-11de-a6fe-93d51630548a
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2011-06-02 21:02:47 +00:00 |
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ebanks
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44cb7e4980
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Renaming to make grepping through the output less confusing
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5908 348d0f76-0448-11de-a6fe-93d51630548a
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2011-05-31 19:54:44 +00:00 |
depristo
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3bcd4c5d75
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--simplifyBAM is now in the SAMFileWriterArgumentTypeDescriptor, as suggested by map. PrintReads has an integrationtest now that writes out a 1 MB bit of HiSeq normally, with compress 0, and with simplifyBAM on.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5521 348d0f76-0448-11de-a6fe-93d51630548a
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2011-03-26 14:57:18 +00:00 |