6e828260a0
Removed -B support. Now explodes with error if -B provided.
2011-08-16 16:13:47 -04:00
3a27a25cfc
Validates that the tribble binding provides the right object types at startup
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Tests to ensure this remains working
2011-08-02 20:11:24 -04:00
a366f9a18d
Updating tools to use the RodBinding<T> syntax
2011-08-02 14:05:51 -04:00
a6691ab2fd
List<RodBinding<T>> now working (sort of).
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At least the argument parsing system tolerates it.
2011-07-29 16:11:22 -04:00
60db6cc836
Warnings for old ROD system use.
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Removed unused class GATKRODFeature
2011-07-27 12:39:12 -04:00
097828a466
ParsingEngine now maintains the list of rodBindings
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No longer try to reparser objects to find the right fields
Direct support in RodBinding for getTags()
2011-07-27 11:36:53 -04:00
38969b9783
Prototype of RODBinding @Arguments instead of -B syntax
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Initial version of RodBinding class.
Flow from walker Rodbinding @Arguments -> RMDTriplet (old system) -> GATK engine (standard). Will need refactoring.
2011-07-26 11:09:06 -04:00
9992c373be
Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.
2011-07-17 20:29:58 -04:00
3c9497788e
Reorganized the codebase beneath top-level public and private directories,
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removing the playground and oneoffprojects directories in the process. Updated
build.xml accordingly.
2011-06-28 06:55:19 -04:00
Mark DePristo
David Roazen