5 Commits (e7d6db033bc099cd6abf800f759afe6fa8a64481)

Author	SHA1	Message	Date
Karthik Gururaj	6e98e9e589	Removed g_haplotype* global variables in native code so that it works ... with multi-threading in Java. Modified VectorLoglessPairHMM.java so that jniInitializeRegion and jniFinalizeRegion are empty	2014-03-06 22:08:35 -08:00
Karthik Gururaj	27e640d640	Modified SSE4.1 and 4.2 checks with _may_i_use_cpu_feature()	2014-03-06 08:51:11 -08:00
Karthik Gururaj	37f107cb3a	Using Mustafa's function _may_i_use_cpu_feature() for AVX check	2014-03-06 08:37:48 -08:00
Karthik Gururaj	7cd23543a1	Added public license text to all C++ files	2014-03-03 09:04:00 -08:00
Karthik Gururaj	c645725fc3	1. Renamed directory structure from public/c++/VectorPairHMM to ... public/VectorPairHMM/src/main/c++ as per Khalid's suggestion 2. Use java.home in public/VectorPairHMM/pom.xml to pass environment variable JRE_HOME to the make process. This is needed because the Makefile needs to compile JNI code with the flag -I<JRE_HOME>/../include (among others). Assuming that the Maven build process uses a JDK (and not just a JRE), the variable java.home points to the JRE inside maven. 3. Dropped all pretense at cross-platform compatibility. Removed Mac profile from pom.xml for VectorPairHMM	2014-02-26 15:17:15 -08:00