gatk-3.8

Commit Graph

Author	SHA1	Message	Date
chartl	b089d35b21	Fix expand intervals to do the right thing: - No more duplicate intervals - Truncation at intervals that already exist, e.g. exists: \|--------\| \|-------\| new: \|---------\| fixed: \|-----\| note that weird instances like: exists: \|-\| \|-\| \|-\| new: \|---------------------\| fixed: \|----\| e.g. you're truncated to the nearest interval on whatever side. In general many behaviors could happen in this instance, this is the one currently implemented. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5323 348d0f76-0448-11de-a6fe-93d51630548a	2011-02-26 04:19:01 +00:00
chartl	5398cf620a	Bug fixes in the in process function (spoiled by python: was not closing my writers). SortByRef now works somewhat like the perl script does, rather than doing a memory-expensive sort. Adding a QTools qscript which is kinda clunky, and will be used mostly for integration tests of these IPFs, pending some better way to construct argument collections and function accessors at compile-time. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5182 348d0f76-0448-11de-a6fe-93d51630548a	2011-02-03 17:32:46 +00:00

Author

SHA1

Message

Date

chartl

b089d35b21

Fix expand intervals to do the right thing:

- No more duplicate intervals
 - Truncation at intervals that already exist, e.g.

exists:      |--------|           |-------|
new:               |---------|
fixed:                 |-----|

note that weird instances like:

exists:           |-|        |-|                  |-|
new:           |---------------------|
fixed:                          |----|

e.g. you're truncated to the nearest interval on whatever side. In general many behaviors could happen in this instance, this is the one currently implemented.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5323 348d0f76-0448-11de-a6fe-93d51630548a

2011-02-26 04:19:01 +00:00

chartl

5398cf620a

Bug fixes in the in process function (spoiled by python: was not closing my writers). SortByRef now works somewhat like the perl script does, rather than doing a memory-expensive sort. Adding a QTools qscript which is kinda clunky, and will be used mostly for integration tests of these IPFs, pending some better way to construct argument collections and function accessors at compile-time.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5182 348d0f76-0448-11de-a6fe-93d51630548a

2011-02-03 17:32:46 +00:00

2 Commits (e7089f9870f205fd1f5bd6249e2e451eda94c4e2)