gatk-3.8

Commit Graph

Author	SHA1	Message	Date
ebanks	b979bd2ced	- Optimized implementation of -byReadGroup in DoCWalker - Added implementation of -bySample in DoCWalker - Removed CoverageBySample and added a watered down version to the examples directory git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2209 348d0f76-0448-11de-a6fe-93d51630548a	2009-12-02 03:39:24 +00:00
hanna	21d1eba502	Cleaned division of responsibilities between arguments to map function. Reference has been changed from an array of bases to an object (ReferenceContext), and LocusContext has been renamed to reflect the fact that it contains contextual information only about the alignments, not the locus in general. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1376 348d0f76-0448-11de-a6fe-93d51630548a	2009-08-04 21:01:37 +00:00
hanna	e93f751bd7	First step in replacing the Hello, World! document. Revamped the HelloWalker and checked it into the source tree, created a special build file for it, and added it to the packaging tool. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1135 348d0f76-0448-11de-a6fe-93d51630548a	2009-06-30 21:59:54 +00:00

Author

SHA1

Message

Date

ebanks

b979bd2ced

- Optimized implementation of -byReadGroup in DoCWalker

- Added implementation of -bySample in DoCWalker
- Removed CoverageBySample and added a watered down version to the examples directory



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2209 348d0f76-0448-11de-a6fe-93d51630548a

2009-12-02 03:39:24 +00:00

hanna

21d1eba502

Cleaned division of responsibilities between arguments to map function. Reference has been changed

from an array of bases to an object (ReferenceContext), and LocusContext has been renamed to reflect
the fact that it contains contextual information only about the alignments, not the locus in general.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1376 348d0f76-0448-11de-a6fe-93d51630548a

2009-08-04 21:01:37 +00:00

hanna

e93f751bd7

First step in replacing the Hello, World! document. Revamped the HelloWalker and checked it into the source tree, created a special build file for it, and added it to the packaging tool.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1135 348d0f76-0448-11de-a6fe-93d51630548a

2009-06-30 21:59:54 +00:00

3 Commits (e6f541fdca3514fc0557b4a3850009023cb57342)