gatk-3.8

Commit Graph

Author	SHA1	Message	Date
Laura Gauthier	4373922ee6	Update GATK to work with latest htsjdk ValidationStringency was moved from htsjdk.samtools.SAMFileReader to htsjdk.samtools samtools find BAM index file method was also moved (and made public!)	2014-07-30 12:05:14 -04:00
Khalid Shakir	2c854e554a	Refactored maven directories and java packages replacing "sting" with "gatk". To reduce merge conflicts, this commit modifies contents of files, while file renamings are in previous commit. See previous commit message for list of changes.	2014-05-19 17:36:39 -04:00
Khalid Shakir	cc3f1f2b96	Revved picard libraries. Third of four commits for picard/htsjdk package rename.	2014-05-08 19:13:27 +08:00

Author

SHA1

Message

Date

Laura Gauthier

4373922ee6

Update GATK to work with latest htsjdk

ValidationStringency was moved from htsjdk.samtools.SAMFileReader to htsjdk.samtools
samtools find BAM index file method was also moved (and made public!)

2014-07-30 12:05:14 -04:00

Khalid Shakir

2c854e554a

Refactored maven directories and java packages replacing "sting" with "gatk".

To reduce merge conflicts, this commit modifies contents of files, while file renamings are in previous commit.
See previous commit message for list of changes.

2014-05-19 17:36:39 -04:00

Khalid Shakir

cc3f1f2b96

Revved picard libraries.

Third of four commits for picard/htsjdk package rename.

2014-05-08 19:13:27 +08:00

3 Commits (e60dd77362883013cebad64f73711e4df50680f7)