Commit Graph

4 Commits (e5ef8388fc494d6553e167ec8aec3fecdfffa18f)

Author SHA1 Message Date
chartl 8125b8b901 Old changes to the exome VQSR search.
SGA updated to include new proportion-based insert size test.

Major fix for dichotomization test: MathUtils now optionally ignores NaN values for sums, averages, variances. In the future this feature can be pushed back into the AssociationContext object iself (e.g. no data? no entry), but it's kept like this for transparency for now.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5618 348d0f76-0448-11de-a6fe-93d51630548a
2011-04-12 23:00:50 +00:00
chartl fe7f45ee2e First pass at recalibrating associations, with optional data whitening. Modification to the TableCodec so it can natively read bedgraph files (just needed to add an extra header marker: "track").
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5515 348d0f76-0448-11de-a6fe-93d51630548a
2011-03-25 19:35:39 +00:00
chartl cd90fdeca1 Right. The issue was not setting the scatter/gather classes appropriately.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5501 348d0f76-0448-11de-a6fe-93d51630548a
2011-03-23 20:08:53 +00:00
chartl 3c1bf40a45 QScript for scatter-gathering regional association (not quite as easy as using the built-in extension, due to the multiplexer). Currently does not work due to something I'm missing re: scatter gather class, this commit is an interim one.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5500 348d0f76-0448-11de-a6fe-93d51630548a
2011-03-23 19:42:29 +00:00