gatk-3.8

Commit Graph

Author	SHA1	Message	Date
Mauricio Carneiro	e5913e50b2	Updating licenses for all scala files GSATDG-5	2013-01-10 17:46:10 -05:00
kshakir	6d59dd3455	Scala classes were only returning direct subclasses (confirmed when inspected in debugger) so changed PluginManager to allow specifying the explicit subclass. Removed some generics from PluginManager for now until able to figure out syntax for requesting explicit subclass. QStatusMessenger uses a slightly more primitive Map[String, Seq[RemoteFile]] instead of Map[ArgumentSource, Seq[RemoteFile]]. Added an QCommandPlugin.initScript utility method for handling specialized script types.	2012-11-14 10:33:20 -05:00
kshakir	55ac4ba70b	Added another utility that can convert to RemoteFiles. QScripts will now generate remote versions of files if the caller has not already passed in remote versions (or the QScript replaces the passed in remote references... not good) Instead of having yet another plugin, combined QStatusMessenger and RemoteFileConverter under general QCommandPlugin trait.	2012-10-17 20:00:03 -04:00

Author

SHA1

Message

Date

Mauricio Carneiro

e5913e50b2

Updating licenses for all scala files

GSATDG-5

2013-01-10 17:46:10 -05:00

kshakir

6d59dd3455

Scala classes were only returning direct subclasses (confirmed when inspected in debugger) so changed PluginManager to allow specifying the explicit subclass.

Removed some generics from PluginManager for now until able to figure out syntax for requesting explicit subclass.
QStatusMessenger uses a slightly more primitive Map[String, Seq[RemoteFile]] instead of Map[ArgumentSource, Seq[RemoteFile]].
Added an QCommandPlugin.initScript utility method for handling specialized script types.

2012-11-14 10:33:20 -05:00

kshakir

55ac4ba70b

Added another utility that can convert to RemoteFiles.

QScripts will now generate remote versions of files if the caller has not already passed in remote versions (or the QScript replaces the passed in remote references... not good)
Instead of having yet another plugin, combined QStatusMessenger and RemoteFileConverter under general QCommandPlugin trait.

2012-10-17 20:00:03 -04:00

3 Commits (e2d41f02820f0987764b5bfbe6e3d331b679c43a)