55 Commits (e1293f0ef27f33cb5c32ff2ec61c1a6b9bf831f4)

Author	SHA1	Message	Date
Eric Banks	f657b8bda8	Complete overhaul of the BQSRv2 integration tests. Much more comprehensive. Still need to deal with a few tests that need some modifications before I'm done, but I'll take care of that sometime tomorrow.	2012-07-17 00:32:34 -04:00
Eric Banks	52baac1e16	Move BQSRv2 into public and v1 into the archive.	2012-07-16 14:23:38 -04:00
Eric Banks	d7bf74fb7e	Updating default value for -mindel to the one used by Khalid in the pipeline and me in my tests.	2012-07-10 02:04:26 -04:00
Mauricio Carneiro	6c17c50fa2	Updates to ReduceReads ... * Added optional parameter to not hard clip on the interval border * Made not clipping the default behavior (hence integration tests changed) * Updated integration tests.	2012-07-09 13:46:51 -04:00
Mauricio Carneiro	12d1c594df	Moving ReduceReads into protected	2012-06-25 17:01:33 -04:00