2 Commits (e03fccb223217b7acb0949d48fce02e7e2b7c1f6)

Author	SHA1	Message	Date
asivache	58debd7e56	A convenience shortcut isReadUnmapped() added: thanks to SAM format specification, 'read unmapped' flag is not always required to be set for an unmapped read; this method checks both the flag and the alignment reference index/start (if those are set to '*' the flag is not required according to the spec!) ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1506 348d0f76-0448-11de-a6fe-93d51630548a	2009-09-02 17:00:39 +00:00
ebanks	59f0c00d77	-set indel cleaning walkers to be in core package ... -move Andrey's alignment utility classes to core git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1307 348d0f76-0448-11de-a6fe-93d51630548a	2009-07-24 05:23:29 +00:00