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3 Commits (dfe160ff77ca01ab43c2ea3be04b6e4a0cf4c6b7)

Author SHA1 Message Date
alecw c0c9f6c8b6 Create package that contains just what Picard needs. 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2421 348d0f76-0448-11de-a6fe-93d51630548a
 2009-12-21 18:48:27 +00:00
ebanks 717eb1de96 - Depth annotation now includes MQ0 reads 
- Removed MQ0 annotation
- Updated RMS MQ annotation to use new pileup
- UG now outputs all of its arguments as key/value pairs in the header (for VCF)
- Cleaned up VCFGenotypeWriterAdapter interface a bit



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2288 348d0f76-0448-11de-a6fe-93d51630548a
 2009-12-09 02:53:00 +00:00
alecw 2cf21317f9 Create package that contains just what Picard needs. 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2282 348d0f76-0448-11de-a6fe-93d51630548a
 2009-12-07 21:22:07 +00:00