5 Commits (de9f1f575f2a322effc938dce7c9f339496976df)

Author	SHA1	Message	Date
hanna	c7e006a996	Bug fixes for interval batching in sharding system. Sharding system now batches intervals and passes ... basic tests for small and large intervals and intervals that cross bin boundaries. Currently works only with a single BAM file. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2800 348d0f76-0448-11de-a6fe-93d51630548a	2010-02-05 21:47:54 +00:00
ebanks	45199136f0	Completed my documentation responsibilities - based on Mark's reasonable assignment and not the one Matt made up while on Meth. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2342 348d0f76-0448-11de-a6fe-93d51630548a	2009-12-13 04:13:30 +00:00
ebanks	b979bd2ced	- Optimized implementation of -byReadGroup in DoCWalker ... - Added implementation of -bySample in DoCWalker - Removed CoverageBySample and added a watered down version to the examples directory git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2209 348d0f76-0448-11de-a6fe-93d51630548a	2009-12-02 03:39:24 +00:00
hanna	21d1eba502	Cleaned division of responsibilities between arguments to map function. Reference has been changed ... from an array of bases to an object (ReferenceContext), and LocusContext has been renamed to reflect the fact that it contains contextual information only about the alignments, not the locus in general. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1376 348d0f76-0448-11de-a6fe-93d51630548a	2009-08-04 21:01:37 +00:00
hanna	e93f751bd7	First step in replacing the Hello, World! document. Revamped the HelloWalker and checked it into the source tree, created a special build file for it, and added it to the packaging tool. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1135 348d0f76-0448-11de-a6fe-93d51630548a	2009-06-30 21:59:54 +00:00