d9fa04f65c
Fixed logic
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@84 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-17 22:20:03 +00:00
1aa3958644
Added ability to sort reads on the fly
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@83 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-17 20:29:09 +00:00
c74bd871b1
added module for aligned reads
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@77 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-17 14:08:54 +00:00
9ae551e858
Lots of error checking added, fixed bugs associated with reading files out of order, added support for U (unsafe) flag for processing reads
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@75 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-16 23:22:04 +00:00
3b5003bd11
Added support for accessing the reference in read traversal
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@60 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-16 14:46:19 +00:00
c9cb7a3596
Renaming of ATK to GATK, the genome analysis TK.
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Also added several more layers of error checking
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@53 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-15 22:21:48 +00:00
ebanks
depristo