Mark DePristo
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9536845e35
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Cleaning up unused code in MV
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2011-09-29 12:20:07 -04:00 |
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Mark DePristo
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5043d76c3d
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Removing more bad uses of SampleDataSource creation
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2011-09-29 12:16:34 -04:00 |
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Mark DePristo
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2a0cd556d3
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Further cleanup of Sample
-- Cleaned up interface functions in GAE
-- Added Walker.getSampleDB() function which is an easier option for tools to get the samples db
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2011-09-29 10:34:51 -04:00 |
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Mark DePristo
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e76f381628
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Moved sample package from DataSources to gatk, and renamed it samples
-- All associated changes to the codebase are just header updates
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2011-09-29 09:57:15 -04:00 |
Christopher Hartl
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3b51d9106a
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Adding in likelihood calculations for mendelian violations. Also fixing a minor and rare bug in SelectVariants when specifying family structure on the command line.
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2011-09-21 16:40:29 -04:00 |
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Mark DePristo
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9992c373be
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Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.
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2011-07-17 20:29:58 -04:00 |
David Roazen
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3c9497788e
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Reorganized the codebase beneath top-level public and private directories,
removing the playground and oneoffprojects directories in the process. Updated
build.xml accordingly.
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2011-06-28 06:55:19 -04:00 |