Commit Graph

4 Commits (d77f4ebe31a8f9e48165bd7ccfd3cd39f2ee25e1)

Author SHA1 Message Date
corin a6d873b268 Fixing this so it gets the right 129 dbsnp for b37 samples
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5491 348d0f76-0448-11de-a6fe-93d51630548a
2011-03-22 17:43:20 +00:00
kshakir 15ce375787 While generating YAML now warning and skipping TSV rows that don't have all values.
Fixed log message typo in PipelineTest.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5320 348d0f76-0448-11de-a6fe-93d51630548a
2011-02-25 20:50:03 +00:00
kshakir ad1e4f47b1 Fixed fatal typo in TSV to YAML converter.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5316 348d0f76-0448-11de-a6fe-93d51630548a
2011-02-25 17:18:54 +00:00
kshakir 24ef2be02d Updated firehose pulldown shell scripts:
- a LOT more error reporting to stderr and exit codes
- split the firehose pull down into a TSV generators and a TSV to YAML converter
- YAML converter is compatible with the TSVs generated by the front end website and will grab only the appropriate columns
- deprecated getFirehosePipelineYaml.sh mode with a single Sample_Set name which uses the Firehose test harness
- new getFirehosePipelineYamle.sh mode using web services API and requires an additional parameter, a password config file with "-u <user>:<pass>" which has been tested on problematic Sample_Sets



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5313 348d0f76-0448-11de-a6fe-93d51630548a
2011-02-25 00:23:05 +00:00