Commit Graph

6 Commits (d77f4ebe31a8f9e48165bd7ccfd3cd39f2ee25e1)

Author SHA1 Message Date
rpoplin 4bbce42861 Renaming ContrastiveRecalibrator --> VariantRecalibrator in preparation for move to core
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5733 348d0f76-0448-11de-a6fe-93d51630548a
2011-05-03 18:12:47 +00:00
chartl 8125b8b901 Old changes to the exome VQSR search.
SGA updated to include new proportion-based insert size test.

Major fix for dichotomization test: MathUtils now optionally ignores NaN values for sums, averages, variances. In the future this feature can be pushed back into the AssociationContext object iself (e.g. no data? no entry), but it's kept like this for transparency for now.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5618 348d0f76-0448-11de-a6fe-93d51630548a
2011-04-12 23:00:50 +00:00
chartl b81228fec1 Minor bug fixes
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5603 348d0f76-0448-11de-a6fe-93d51630548a
2011-04-08 17:30:40 +00:00
chartl cc58e19621 This is now running. Expect results in a few weeks when the ~7k jobs have percolated through the week queue. Pray gsa1 doesn't go down.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5593 348d0f76-0448-11de-a6fe-93d51630548a
2011-04-07 21:12:59 +00:00
chartl 6a26957b65 Bug squashing
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5592 348d0f76-0448-11de-a6fe-93d51630548a
2011-04-07 20:11:28 +00:00
chartl a1b7d28375 Initial VQSR full search script
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5591 348d0f76-0448-11de-a6fe-93d51630548a
2011-04-07 20:03:48 +00:00