gatk-3.8

Author	SHA1	Message	Date
Ron Levine	35a06879f1	Move htsjdk and picard to version 2.3.0	2016-05-16 14:50:00 -04:00
Louis Bergelson	e1c41b2c38	Updated gatk so it compiles on java 8 updated cofoja to 1.2 from 1.0 added explicit type casts in places that java 8 required them	2015-06-26 15:59:46 -04:00
Khalid Shakir	88150e0166	Switched commited dependency repository from ivy to maven.	2014-02-03 13:50:46 -05:00