4 Commits (d446d34227e3b3859fe34f4719df00f9ca3539e8)

Author	SHA1	Message	Date
Mark DePristo	f6563c0f9f	Removed support for RMD in @Requires and @Allows ... Merge as well Conflicts: private/java/src/org/broadinstitute/sting/gatk/walkers/qc/TestVariantContextWalker.java public/java/src/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmission.java public/java/src/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantDataManager.java public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariants.java public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantValidationAssessor.java public/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java public/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersPerformanceTest.java public/java/test/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalIntegrationTest.java public/java/test/org/broadinstitute/sting/utils/variantcontext/VariantContextIntegrationTest.java	2011-08-03 15:36:55 -04:00
Mark DePristo	421b70ca4f	Removed previous, and largely unused, help system extensions. ... This involved deleting the utils/help/*Taglet.java classes, which parsed out these fields unnecessarily This also involved removing the few uses of these from the codebase. For these uses, though, almost all were an identical copy of the first line of the docs, which is the default javadoc behavior anyway.	2011-07-22 09:42:44 -04:00
Mark DePristo	9992c373be	Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.	2011-07-17 20:29:58 -04:00
David Roazen	3c9497788e	Reorganized the codebase beneath top-level public and private directories, ... removing the playground and oneoffprojects directories in the process. Updated build.xml accordingly.	2011-06-28 06:55:19 -04:00