6 Commits (d1e70d6ec21a8015596ac7aa4c3163c6b4af28ef)

Author	SHA1	Message	Date
Khalid Shakir	22ca44c015	Fixed Queue's tagging of RodBindings. ... Fixed argument definition names.	2011-08-21 02:34:20 -04:00
Mark DePristo	e36994e36b	Refactored a FeatureManager class from RMDTrackBuilder ... New class handles (vastly more cleanly) the db of tribble codecs, features, and names for use throughout the GATK. Added SelfScopingFeatureCodec interface that allows a FeatureCodec to examine a file and determine if the file can be parsed. This is the first step towards allowing the GATK to dynamically determine the type of a RodBinding.	2011-08-08 14:04:46 -04:00
Mark DePristo	a6691ab2fd	List<RodBinding<T>> now working (sort of). ... At least the argument parsing system tolerates it.	2011-07-29 16:11:22 -04:00
Mark DePristo	f3049fba63	refdata directory cleanup ... Removing unused files RODRecordIterator, ReferenceOrderedData, QueryableTrack, RMDTrackCreationException, GATKFeatureIterator, ReferenceOrderedDataUnitTest Refactored dbSNP and refseq utilities to be closer to the other files implementing these features	2011-07-25 13:21:52 -04:00
Mark DePristo	9992c373be	Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.	2011-07-17 20:29:58 -04:00
David Roazen	3c9497788e	Reorganized the codebase beneath top-level public and private directories, ... removing the playground and oneoffprojects directories in the process. Updated build.xml accordingly.	2011-06-28 06:55:19 -04:00