1 Commits (d005c4bf09b137f277261de125e8c1b624b44ffc)

Author	SHA1	Message	Date
depristo	2182b8c7e2	Better query start / stop function that directly parses the cigar string, unlike the previous version. Now properly handles H (hard-clipped) reads. Added -baq OFF and -baq RECALCULATE integration tests on all three 1KG technologies. Please let me know if this new code somehow fails. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5108 348d0f76-0448-11de-a6fe-93d51630548a	2011-01-28 15:08:21 +00:00