Commit Graph

2 Commits (cfff486338a346dfe94a3a5117f8c50d1471e63f)

Author SHA1 Message Date
hanna 7893aaefe9 Updates to chunk iteration. Includes the return of the dreaded *2.java files;
hopefully I can find a way to kill these off before the Picard patch is ready.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2550 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-08 20:20:56 +00:00
hanna 497ae700c4 A rethink of the existing BAM block extraction code: rather than working in
chunk space directly, stream data in block space, converting to chunk space
on demand.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2484 348d0f76-0448-11de-a6fe-93d51630548a
2009-12-30 18:19:51 +00:00