4 Commits (ce08f5f0c32b8440f71ea938e777059ffcddf050)

Author	SHA1	Message	Date
hanna	9b182e3063	Prep for documenting command-line arguments: delete some arguments that don't make sense any more given ... the state of the traversals and GATK input requirements: all_loci (replaced by walker annotation), max OTF sorts (bam files must be sorted and indexed), threaded io (replaced by data sharding framework). git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1144 348d0f76-0448-11de-a6fe-93d51630548a	2009-07-01 18:23:35 +00:00
hanna	dc6a9ca196	Pooling resources to lower memory consumption. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@962 348d0f76-0448-11de-a6fe-93d51630548a	2009-06-10 13:39:32 +00:00
depristo	e0803eabd9	enabled underlying filtering of zero mapping quality reads, vastly improves system performance ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@853 348d0f76-0448-11de-a6fe-93d51630548a	2009-05-29 14:51:08 +00:00
hanna	2c4de7b5c5	Switch TraverseByLoci over to new sharding system, and cleanup some code in passing read files along ... the pathway from command line to traversal engine. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@727 348d0f76-0448-11de-a6fe-93d51630548a	2009-05-15 21:02:12 +00:00