5 Commits (cd38dfb4ef8a0043ccad553e4eae6ddebf165e47)

Author	SHA1	Message	Date
carneiro	50c870cfce	Data Processing Pipeline: local indel realignment, mark duplicates and BQSR. Done. ... Pacbio pipeline: now all pacbio bams have baq annotated in so running UG is uber fast. Methods pipeline: minor cosmetic changes. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5253 348d0f76-0448-11de-a6fe-93d51630548a	2011-02-16 17:22:30 +00:00
carneiro	87e19a17ae	small updates to the variant eval part of the pipeline, some updates to the pacbio specific pipeline. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5244 348d0f76-0448-11de-a6fe-93d51630548a	2011-02-15 16:19:07 +00:00
carneiro	5f10fffa47	merge intervals now prints a sorted list in the end. ... added the ccs datasets to the pbCalling pipeline. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5233 348d0f76-0448-11de-a6fe-93d51630548a	2011-02-11 20:57:59 +00:00
carneiro	50c2fa3c3a	this -1 made ALL the difference in the world. Minor bug fix. ... Regular updates to the pbCalling pipeline. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5232 348d0f76-0448-11de-a6fe-93d51630548a	2011-02-11 19:25:09 +00:00
carneiro	9c2c5efe35	a modified version of the Methods Development calling pipeline made to work with pacbio data. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5225 348d0f76-0448-11de-a6fe-93d51630548a	2011-02-10 16:06:50 +00:00