3 Commits (cc909602c7c0c6285c78b9790e3b12808a635822)

Author	SHA1	Message	Date
hanna	acfe83920b	'-L unmapped': adding integration tests for explicitly including (-L unmapped) ... unmapped reads and explicitly excluding (-XL unmapped) unmapped reads, augmenting the suite of unit tests already put in place. '-L unmapped' seems safe to use; go for it, but please validate results against samtools flagstat when the process finishes. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4849 348d0f76-0448-11de-a6fe-93d51630548a	2010-12-15 23:11:46 +00:00
hanna	861ee3e37a	Changing testing framework from junit -> testng, for its enhanced configurability. ... Initial test to see how Bamboo will respond. More detailed email to follow. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4609 348d0f76-0448-11de-a6fe-93d51630548a	2010-11-01 21:31:44 +00:00
hanna	78343be52c	At some time in the recent past, we lost our ability to process the '-L all' ... argument. Brought it back, and added an integrationtest to make sure it stays around. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4390 348d0f76-0448-11de-a6fe-93d51630548a	2010-09-30 15:58:43 +00:00