3e54e131e0
Cleanup and formatting overhaul.
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2652 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-21 19:22:56 +00:00
ee421c106c
Autogenerate .tar.bz2 with embedded version number. Misc formatting changes.
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2651 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-21 18:32:46 +00:00
2261f57e5c
Rename modules to reflect the fact that they're really packages in their own right.
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2638 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-20 01:13:17 +00:00
96a053c769
Port VariantEval and FindContaminatingReadGroups to modules.
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2634 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-19 22:10:33 +00:00
e936cbff1b
Removed experimental recalibration covariates.
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2631 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-19 21:29:43 +00:00
e1fba42fdb
Add new 'module' XML tag, that can import modules from supplementary files.
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2624 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-19 01:56:04 +00:00
420cef4094
Added version numbers to the help doclet extractor. Since the help system is behaving
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more like a resource bundle at this point, changed it over to use the Java ResourceBundle
support classes.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2606 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-15 23:31:29 +00:00
d30e2b390a
Remove several walkers that won't be used in the GATK-GSA-Pipeline.jar.
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2602 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-15 21:17:23 +00:00
d2f752dbc1
Adding TileCovariate to the GATK-GSA-Pipeline list.
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2598 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-15 20:57:13 +00:00
190335db9c
Added a GSA specific package with Playground walkers.
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2597 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-15 20:50:29 +00:00
hanna
kshakir
rpoplin