gatk-3.8

Author	SHA1	Message	Date
andrewk	f5e547ed6e	Add ability for flat file table parsing module to skip ahead to first occurence of a regular expression (use case: consistently parsing DepthOfCoverage output for histogram section of file across file format changes) git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2377 348d0f76-0448-11de-a6fe-93d51630548a	2009-12-16 20:38:50 +00:00
andrewk	1c648a2d5f	Skip compiled python files (*.pyc) in svn status output git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1346 348d0f76-0448-11de-a6fe-93d51630548a	2009-07-30 21:45:23 +00:00
andrewk	c8fcecbc6f	Added ParseDCCSequenceData.py to repository and made changes that allow an analysis of quantity of sequence data by platform and project, moved table / record system to a new module called FlatFileTable.py and built that into ParseDCCSequenceData and CoverageEval.py; changed lod threshold in CoverageEvalWalker. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1201 348d0f76-0448-11de-a6fe-93d51630548a	2009-07-08 22:04:26 +00:00