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3 Commits (cb2dd470b6339ba024783c83a3bb656271f267d0)

Author SHA1 Message Date
Mauricio Carneiro 29fd536c28 Updating licenses manually 
Please check that your commit hook is properly pointing at ../../private/shell/pre-commit

Conflicts:
	public/java/test/org/broadinstitute/variant/VariantBaseTest.java
 2013-01-29 17:27:53 -05:00
David Roazen a536e1da84 Move some VCF/VariantContext methods back to the GATK based on feedback 
-Moved some of the more specialized / complex VariantContext and VCF utility
 methods back to the GATK.

-Due to this re-shuffling, was able to return things like the Pair class back
 to the GATK as well.
 2013-01-29 16:56:55 -05:00
David Roazen f63f27aa13 org.broadinstitute.variant refactor, part 2 
-removed sting dependencies from test classes
-removed org.apache.log4j dependency
-misc cleanup
 2013-01-28 09:03:46 -05:00