3 Commits (ca1917507f66b74fe91c1064b0545aa15d0c50bb)

Author	SHA1	Message	Date
depristo	3b1ab86d11	Added generic interfaces to RefMetaDataTracker to obtain VariantContext objects. More docs. Integration tests for VariantContexts using dbSNP and VCF. At this stage if you use dbSNP or VCF files only in your walkers, please move them over to the VariantContext, it's just nicer. If you've got RODs that implemented the old variation/genotype interfaces, and you want them to work in new walkers, please add an adaptor to VariantContextAdaptors in refdata package. It should be easy and will reduce burden in the long term when those interfaces are retired. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2803 348d0f76-0448-11de-a6fe-93d51630548a	2010-02-06 16:26:06 +00:00
depristo	1494dc875f	fixing up tests. Moves are complete ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2789 348d0f76-0448-11de-a6fe-93d51630548a	2010-02-05 14:24:00 +00:00
depristo	c6d86da4b8	almost managed to move things around perfectly in move go ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2788 348d0f76-0448-11de-a6fe-93d51630548a	2010-02-05 14:18:26 +00:00