gatk-3.8

Author	SHA1	Message	Date
rpoplin	c78fc23ec5	Minor updates to output of variant optimizer. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3031 348d0f76-0448-11de-a6fe-93d51630548a	2010-03-18 12:46:47 +00:00
rpoplin	58a31bab6a	Variant optimizer now outputs VCF files via ApplyVariantClustersWalker. Documentation to be added to the wiki. It is ready to be used by other people but only with great caution. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3028 348d0f76-0448-11de-a6fe-93d51630548a	2010-03-17 20:41:42 +00:00
rpoplin	933823c8bc	Removed the StingException when mkdir fails for Sendu in AnalyzeCovariates. Incremental updates to VariantOptimizer. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3013 348d0f76-0448-11de-a6fe-93d51630548a	2010-03-16 19:45:02 +00:00