gatk-3.8

Author	SHA1	Message	Date
depristo	826781a760	The traversal engine now passes the reduce result to OnTraversalDone() in the walker base class git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@210 348d0f76-0448-11de-a6fe-93d51630548a	2009-03-27 13:44:46 +00:00
hanna	53fe9acf65	Make command-line arguments available in walker constructor, provide back door from walker into GATK itself, do some cleanup of output messages, and add some bug fixes. Command-line arguments in walkers are now feature-complete, but still a bit messy. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@203 348d0f76-0448-11de-a6fe-93d51630548a	2009-03-26 20:45:27 +00:00
hanna	5f9010116a	Collapse the walker hierarchy, in preparation for in-walker output streams less hokey walker args. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@201 348d0f76-0448-11de-a6fe-93d51630548a	2009-03-26 16:22:35 +00:00
hanna	63cd1fe201	Push core / playground lower into the tree. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@160 348d0f76-0448-11de-a6fe-93d51630548a	2009-03-23 23:19:54 +00:00