gatk-3.8

Commit Graph

Author	SHA1	Message	Date
Matt Hanna	3642a73c07	Performance improvements for dynamically merging BAMs in read walkers. This change and my previous change have dropped runtime when dynamically merging 2k BAM files from 72.6min/1M reads to 46.8sec/1M reads. Note that many of these changes are stopgaps -- the real problem is the way ReadWalkers interface with Picard, and I'll have to work with Tim&Co to produce a more maintainable patch.	2011-12-16 09:37:44 -05:00

Author

SHA1

Message

Date

Matt Hanna

3642a73c07

Performance improvements for dynamically merging BAMs in read walkers.

This change and my previous change have dropped runtime when dynamically merging 2k BAM files from 72.6min/1M reads to 46.8sec/1M reads.
Note that many of these changes are stopgaps -- the real problem is the way ReadWalkers interface with Picard, and I'll have to work with
Tim&Co to produce a more maintainable patch.

2011-12-16 09:37:44 -05:00

1 Commits (c5320ef1af7a9f65ef9715121a0e5e246e1b44a3)